BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007695
(592 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q940Z1|PPR51_ARATH Pentatricopeptide repeat-containing protein At1g19525
OS=Arabidopsis thaliana GN=At1g19525 PE=2 SV=2
Length = 316
Score = 353 bits (905), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 170/299 (56%), Positives = 232/299 (77%), Gaps = 1/299 (0%)
Query: 283 MNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQ 342
M++NGI PDI+T+T LVHMYSK+GN +RA EAFE+L+S+G +PD+K+Y +MI+ YVNAG+
Sbjct: 1 MSQNGIFPDILTATALVHMYSKSGNFERATEAFENLKSYGLRPDEKIYEAMILGYVNAGK 60
Query: 343 PKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP-TLESCT 401
PKLG L+ M ++ SEE+Y+ALLR++AQ GD GA I++ M+ P + E+ +
Sbjct: 61 PKLGERLMKEMQAKELKASEEVYMALLRAYAQMGDANGAAGISSSMQYASDGPLSFEAYS 120
Query: 402 LLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKD 461
L VEAYG+AG D+A+SNFD M +LGHKPDD+C A+++ AY +N LDKAL LLL+LEKD
Sbjct: 121 LFVEAYGKAGQVDKAKSNFDEMRKLGHKPDDKCIANLVRAYKGENSLDKALRLLLQLEKD 180
Query: 462 GFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKA 521
G E G TYTVLVDW+ L LI EAEQLL KIS+LGEAPPF++QVSLC MY+ EKK
Sbjct: 181 GIEIGVITYTVLVDWMANLGLIEEAEQLLVKISQLGEAPPFELQVSLCCMYSGVRNEKKT 240
Query: 522 LQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALIS 580
LQALG LEAK++QMGP++F+++I+ L GGF +DA+R++ MEA+ F S+RL++ +++
Sbjct: 241 LQALGVLEAKRDQMGPNEFDKVISALKRGGFEKDARRMYKYMEARKFLPSQRLQMDMVA 299
Score = 35.4 bits (80), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%)
Query: 261 SKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRS 320
+ L+ A+ EN L+ A R+L ++ ++GI ++T TVLV + G ++ A++ +
Sbjct: 155 ANLVRAYKGENSLDKALRLLLQLEKDGIEIGVITYTVLVDWMANLGLIEEAEQLLVKISQ 214
Query: 321 HGFQPDKKVYNSMIMAY 337
G P ++ S+ Y
Sbjct: 215 LGEAPPFELQVSLCCMY 231
Score = 33.1 bits (74), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 43/96 (44%)
Query: 246 LVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKA 305
L L ++ + V Y+ L+D A +E+AE++L K+++ G P L MYS
Sbjct: 175 LQLEKDGIEIGVITYTVLVDWMANLGLIEEAEQLLVKISQLGEAPPFELQVSLCCMYSGV 234
Query: 306 GNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAG 341
N + +A L + Q ++ +I A G
Sbjct: 235 RNEKKTLQALGVLEAKRDQMGPNEFDKVISALKRGG 270
>sp|Q8LEZ4|NFD5_ARATH Protein NUCLEAR FUSION DEFECTIVE 5, mitochondrial OS=Arabidopsis
thaliana GN=NFD5 PE=2 SV=1
Length = 372
Score = 265 bits (676), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 146/245 (59%), Positives = 187/245 (76%), Gaps = 3/245 (1%)
Query: 1 MLLMIVGKVVSEMEKGGLERMIESASASPSQDFSEDLWRTVWEVSNLVLEDMEKARKKEK 60
MLL+IV KVV E+E+GG + + SA SPS +FS+DLW T+WEVSN VL+DMEK RKKEK
Sbjct: 127 MLLLIVEKVVEEIERGGFNK-VGSAPPSPSSEFSDDLWATIWEVSNTVLKDMEKERKKEK 185
Query: 61 MKGFLQSDKVKEMSRFAGEIGIRGDMLRELRFKWAREEMEESEFYEGLERLRKEANAQEM 120
MK ++QS +V EM RFAGEIGIRGD+LRELRFKWARE+M+++EFYE LE+ R N+
Sbjct: 186 MKQYVQSPEVMEMCRFAGEIGIRGDLLRELRFKWAREKMDDAEFYESLEQQRDLDNSIRE 245
Query: 121 GEKAEGKAAAE--CAEVEEKPKVITLPKRHGKIKYKIYGLDLSDPKWTEVAEKIHERGEM 178
E +G+ E E + + I+LPKR GK+KYKIYGL+LSDPKW E+A+KIHE E
Sbjct: 246 SETVDGEVEEEGFVPSDEVESRSISLPKRKGKLKYKIYGLELSDPKWVEMADKIHEAEEE 305
Query: 179 ILPEEPKPITGKCKLITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQ 238
EPKP+TGKCKL+ +K+ SL++ +DPS LLAEW ELL+P+R+DWI L+++LRE NT
Sbjct: 306 ADWREPKPVTGKCKLVMEKLESLQEGDDPSGLLAEWAELLEPNRVDWIALINQLREGNTH 365
Query: 239 LYFKV 243
Y KV
Sbjct: 366 AYLKV 370
>sp|Q9LPC4|PPR1_ARATH Pentatricopeptide repeat-containing protein At1g01970
OS=Arabidopsis thaliana GN=At1g01970 PE=2 SV=1
Length = 409
Score = 216 bits (551), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 121/337 (35%), Positives = 183/337 (54%), Gaps = 1/337 (0%)
Query: 165 WTEVAEKIHERGEMILPEEPKPITGKCKLITDKILSLEKEEDP-SPLLAEWKELLQPSRI 223
W +V + E + + P ++ +C+ + +I+ E+ LL W + P R
Sbjct: 72 WADVGLNLTEEQDEAITRIPIKMSKRCQALMRQIICFSPEKGSFCDLLGAWLRRMNPIRA 131
Query: 224 DWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKM 283
DW+++L L+ ++ Y KVAE L ++SF+ N RDY+K+I + K N +EDAER L M
Sbjct: 132 DWLSILKELKNLDSPFYIKVAEFSLLQDSFEANARDYTKIIHYYGKLNQVEDAERTLLSM 191
Query: 284 NENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQP 343
G + D VT T +V +YSKAG A+E F ++ G D + Y SMIMAY+ AG P
Sbjct: 192 KNRGFLIDQVTLTAMVQLYSKAGCHKLAEETFNEIKLLGEPLDYRSYGSMIMAYIRAGVP 251
Query: 344 KLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLL 403
+ G SL+ M + I E+Y ALLR ++ GD GA ++ + ++I P ++ C LL
Sbjct: 252 EKGESLLREMDSQEICAGREVYKALLRDYSMGGDAEGAKRVFDAVQIAGITPDVKLCGLL 311
Query: 404 VEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGF 463
+ AY +G AR F+ M + G K D+C A ++AAY K+ L++AL L+ELEKD
Sbjct: 312 INAYSVSGQSQNARLAFENMRKAGIKATDKCVALVLAAYEKEEKLNEALGFLVELEKDSI 371
Query: 464 EPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
G VL W +L ++ E E LL + S P
Sbjct: 372 MLGKEASAVLAQWFKKLGVVEEVELLLREFSSSQSQP 408
Score = 49.7 bits (117), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 72/155 (46%)
Query: 438 MIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
+I YGK N ++ A LL ++ GF T T +V + AE+ +I LG
Sbjct: 171 IIHYYGKLNQVEDAERTLLSMKNRGFLIDQVTLTAMVQLYSKAGCHKLAEETFNEIKLLG 230
Query: 498 EAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQ 557
E ++ S+ Y RAG+ +K L +++++ G + ++ ++ GG + A+
Sbjct: 231 EPLDYRSYGSMIMAYIRAGVPEKGESLLREMDSQEICAGREVYKALLRDYSMGGDAEGAK 290
Query: 558 RVHGLMEAQGFAASERLKVALISSQTFNRQRQPTR 592
RV ++ G +L LI++ + + Q Q R
Sbjct: 291 RVFDAVQIAGITPDVKLCGLLINAYSVSGQSQNAR 325
>sp|O04491|PPR26_ARATH Putative pentatricopeptide repeat-containing protein At1g09680
OS=Arabidopsis thaliana GN=At1g09680 PE=3 SV=1
Length = 607
Score = 123 bits (308), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 87/297 (29%), Positives = 139/297 (46%), Gaps = 22/297 (7%)
Query: 215 KELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQT-----------NVRDYSKL 263
K LQP+ + + L++ Y KV L +E F+ +V YS L
Sbjct: 268 KRSLQPTVVSFNTLING--------YCKVGNL---DEGFRLKHQMEKSRTRPDVFTYSAL 316
Query: 264 IDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGF 323
I+A KEN ++ A + +M + G++P+ V T L+H +S+ G +D KE+++ + S G
Sbjct: 317 INALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQKMLSKGL 376
Query: 324 QPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQ 383
QPD +YN+++ + G ++VD MI G+ + Y L+ F + GDV A +
Sbjct: 377 QPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGGDVETALE 436
Query: 384 ITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYG 443
I M + + LV + G A M+R G KPDD M+ A+
Sbjct: 437 IRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDDVTYTMMMDAFC 496
Query: 444 KKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
KK LL E++ DG P TY VL++ L +L + A+ LL + +G P
Sbjct: 497 KKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKLGQMKNADMLLDAMLNIGVVP 553
Score = 97.1 bits (240), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 83/378 (21%), Positives = 167/378 (44%), Gaps = 11/378 (2%)
Query: 187 ITGKCKLITDKILSLEKEEDPSPLLAEWKELLQPSRID-----WINLLDRLREQNTQLYF 241
+T C + D ++ + P + L + R D NLLDR+ + N
Sbjct: 165 VTPMCGFLVDALMITYTDLGFIPDAIQCFRLSRKHRFDVPIRGCGNLLDRMMKLNPTGTI 224
Query: 242 KVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHM 301
+ + + F NV ++ L++ KE + DA+++ ++ + + P +V+ L++
Sbjct: 225 WGFYMEILDAGFPLNVYVFNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLING 284
Query: 302 YSKAGNLD---RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGI 358
Y K GNLD R K E R+ +PD Y+++I A + L D M G+
Sbjct: 285 YCKVGNLDEGFRLKHQMEKSRT---RPDVFTYSALINALCKENKMDGAHGLFDEMCKRGL 341
Query: 359 ERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARS 418
++ I+ L+ ++ G++ + M + QP + LV + + GD AR+
Sbjct: 342 IPNDVIFTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARN 401
Query: 419 NFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLG 478
D MIR G +PD ++I + + ++ AL + E++++G E ++ LV +
Sbjct: 402 IVDGMIRRGLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMC 461
Query: 479 RLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD 538
+ + +AE+ L ++ G P + D + + G + + L +++
Sbjct: 462 KEGRVIDAERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVV 521
Query: 539 DFERIINGLLAGGFLQDA 556
+ ++NGL G +++A
Sbjct: 522 TYNVLLNGLCKLGQMKNA 539
Score = 56.2 bits (134), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 73/153 (47%), Gaps = 2/153 (1%)
Query: 218 LQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
L+P +I + L+D R + + ++ + + + + + +S L+ KE + DA
Sbjct: 411 LRPDKITYTTLIDGFCRGGDVETALEIRK-EMDQNGIELDRVGFSALVCGMCKEGRVIDA 469
Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
ER L++M GI PD VT T+++ + K G+ + + ++S G P YN ++
Sbjct: 470 ERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNG 529
Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
GQ K L+D M+ G+ + Y LL
Sbjct: 530 LCKLGQMKNADMLLDAMLNIGVVPDDITYNTLL 562
Score = 53.1 bits (126), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 57/309 (18%), Positives = 113/309 (36%), Gaps = 35/309 (11%)
Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
+ F +R L+D K N ++ + G ++ +L++ + K GN+
Sbjct: 198 KHRFDVPIRGCGNLLDRMMKLNPTGTIWGFYMEILDAGFPLNVYVFNILMNKFCKEGNIS 257
Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
A++ F+ + QP +N++I Y G G L M E+S
Sbjct: 258 DAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQM-----EKSRT------ 306
Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
+P + + + L+ A + D A FD M + G
Sbjct: 307 ------------------------RPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLI 342
Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
P+D ++I + + +D ++ G +P Y LV+ + + A +
Sbjct: 343 PNDVIFTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNI 402
Query: 490 LGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLA 549
+ + G P +L D + R G + AL+ ++ ++ F ++ G+
Sbjct: 403 VDGMIRRGLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCK 462
Query: 550 GGFLQDAQR 558
G + DA+R
Sbjct: 463 EGRVIDAER 471
>sp|Q9S7Q2|PP124_ARATH Pentatricopeptide repeat-containing protein At1g74850,
chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1
Length = 862
Score = 123 bits (308), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 99/393 (25%), Positives = 163/393 (41%), Gaps = 16/393 (4%)
Query: 197 KILSLEKEEDPSPLLAEWKELLQPSR---IDWINLLDRLREQNTQLYFKVAELVLSEESF 253
++L K E SP + + ++ +DW LL E + E
Sbjct: 197 ELLDRMKNEKISPSILTYNTVINACARGGLDWEGLLGLFAE-------------MRHEGI 243
Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
Q ++ Y+ L+ A A ++AE + + MN+ GIVPD+ T + LV + K L++ +
Sbjct: 244 QPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCD 303
Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
+ S G PD YN ++ AY +G K M + M +G + Y LL F
Sbjct: 304 LLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFG 363
Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
Q G Q+ M+ P + +L+E +G+ G + + F M+ +PD
Sbjct: 364 QSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDME 423
Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
+I A GK L + A +L + + P YT +++ G+ L EA +
Sbjct: 424 TYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTM 483
Query: 494 SELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFL 553
E+G P + SL +AR G+ K++ L L D F I GG
Sbjct: 484 HEVGSNPSIETFHSLLYSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGKF 543
Query: 554 QDAQRVHGLMEAQGFAASERLKVALISSQTFNR 586
++A + + ME ER A++S +F R
Sbjct: 544 EEAVKTYVDMEKSRCDPDERTLEAVLSVYSFAR 576
Score = 80.1 bits (196), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 70/279 (25%), Positives = 121/279 (43%), Gaps = 6/279 (2%)
Query: 290 PDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSL 349
P+ T+++ + + G LD+ E F+ + S G Y ++I AY G+ + + L
Sbjct: 139 PNEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLEL 198
Query: 350 VDMMITSGIERSEEIYLALLRSFAQCG-DVRGAGQITNIMRIEEFQPTLESCTLLVEAYG 408
+D M I S Y ++ + A+ G D G + MR E QP + + L+ A
Sbjct: 199 LDRMKNEKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACA 258
Query: 409 QAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPA 468
G D+A F M G PD + ++ +GK L+K +LL E+ G P
Sbjct: 259 IRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDIT 318
Query: 469 TYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFL 528
+Y VL++ + I EA + ++ G P L +++ ++G Q FL
Sbjct: 319 SYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQL--FL 376
Query: 529 EAKKEQMGPD--DFERIINGLLAGGFLQDAQRV-HGLME 564
E K PD + +I GG+ ++ + H ++E
Sbjct: 377 EMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVE 415
Score = 76.3 bits (186), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 99/222 (44%), Gaps = 3/222 (1%)
Query: 240 YFK-VAELV--LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTST 296
YFK V L + EE+ + ++ Y +I A K EDA +IL+ M N IVP T
Sbjct: 402 YFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYT 461
Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
++ + +A + A AF ++ G P + ++S++ ++ G K +++ ++ S
Sbjct: 462 GVIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGGLVKESEAILSRLVDS 521
Query: 357 GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA 416
GI R+ + + A + ++ Q G A + M P + ++ Y A D+
Sbjct: 522 GIPRNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAVLSVYSFARLVDEC 581
Query: 417 RSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLEL 458
R F+ M P C M+A YGK D LL E+
Sbjct: 582 REQFEEMKASDILPSIMCYCMMLAVYGKTERWDDVNELLEEM 623
Score = 59.7 bits (143), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/233 (18%), Positives = 95/233 (40%)
Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
N YS L++ + +D ++ +M + PD T +L+ ++ + G F
Sbjct: 351 NANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLF 410
Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
+ +PD + Y +I A G + ++ M + I S + Y ++ +F Q
Sbjct: 411 HDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQA 470
Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
A N M P++E+ L+ ++ + G ++ + ++ G +
Sbjct: 471 ALYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGGLVKESEAILSRLVDSGIPRNRDTF 530
Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQ 488
+ I AY + ++A+ +++EK +P T ++ +L++E +
Sbjct: 531 NAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAVLSVYSFARLVDECRE 583
Score = 56.6 bits (135), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 93/211 (44%), Gaps = 6/211 (2%)
Query: 382 GQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR-LGHKPDDRCTASMIA 440
G I + I + + +L L+ + + GD ++ F YM R + KP++ MI+
Sbjct: 90 GSIARCLDIFKNKLSLNDFALVFKEFAGRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMIS 149
Query: 441 AYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
G++ LLDK L + E+ G +YT L++ GR + +LL ++ +P
Sbjct: 150 LLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKNEKISP 209
Query: 501 PFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQR 558
++ + AR G++ + L L F E + E + PD + +++ G +A+
Sbjct: 210 SILTYNTVINACARGGLDWEGLLGL-FAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAEM 268
Query: 559 VHGLMEAQGFAASERLKVALISSQTFNRQRQ 589
V M G L+ +TF + R+
Sbjct: 269 VFRTMNDGGIVPDLTTYSHLV--ETFGKLRR 297
>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670,
mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2
SV=1
Length = 741
Score = 118 bits (295), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 87/347 (25%), Positives = 158/347 (45%), Gaps = 6/347 (1%)
Query: 223 IDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKK 282
I ++ L R++E + L L++ + + +V YS +++ + + L+ ++++
Sbjct: 253 IHFVCQLGRIKEAHHLL------LLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEV 306
Query: 283 MNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQ 342
M G+ P+ ++ + + L A+EAF + G PD VY ++I + G
Sbjct: 307 MKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGD 366
Query: 343 PKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTL 402
+ M + I Y A++ F Q GD+ AG++ + M + +P + T
Sbjct: 367 IRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTE 426
Query: 403 LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG 462
L+ Y +AG A ++MI+ G P+ ++I K+ LD A LL E+ K G
Sbjct: 427 LINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIG 486
Query: 463 FEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKAL 522
+P TY +V+ L + I EA +L+G+ G +L D Y ++G KA
Sbjct: 487 LQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQ 546
Query: 523 QALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFA 569
+ L + K Q F ++NG G L+D +++ M A+G A
Sbjct: 547 EILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIA 593
Score = 89.0 bits (219), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 66/272 (24%), Positives = 124/272 (45%), Gaps = 9/272 (3%)
Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
+++LI+ + K ++DA R+ M + G P++VT T L+ K G+LD A E +
Sbjct: 424 FTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMW 483
Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
G QP+ YNS++ +G + + LV +G+ Y L+ ++ + G++
Sbjct: 484 KIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMD 543
Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
A +I M + QPT+ + +L+ + G + ++M+ G P+ S++
Sbjct: 544 KAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLV 603
Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
Y +N L A + ++ G P TY LV + + + EA L ++ G
Sbjct: 604 KQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKG-- 661
Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAK 531
F + VS + + +++K FLEA+
Sbjct: 662 --FSVSVSTYSVLIKGFLKRKK-----FLEAR 686
Score = 83.6 bits (205), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 73/328 (22%), Positives = 133/328 (40%), Gaps = 39/328 (11%)
Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
NV Y+ +I + +++A +L M G PD+++ + +V+ Y + G LD+ +
Sbjct: 245 NVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLI 304
Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
E ++ G +P+ +Y S+I + MI GI +Y L+ F +
Sbjct: 305 EVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKR 364
Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
GD+R A + M + P + + T ++ + Q GD +A
Sbjct: 365 GDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEA------------------- 405
Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
GK L E+ G EP T+T L++ + + +A ++ + +
Sbjct: 406 -------GK---------LFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQ 449
Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDF--ERIINGLLAGGFL 553
G +P +L D + G A + L E K + P+ F I+NGL G +
Sbjct: 450 AGCSPNVVTYTTLIDGLCKEGDLDSANELLH--EMWKIGLQPNIFTYNSIVNGLCKSGNI 507
Query: 554 QDAQRVHGLMEAQGFAASERLKVALISS 581
++A ++ G EA G A L+ +
Sbjct: 508 EEAVKLVGEFEAAGLNADTVTYTTLMDA 535
Score = 82.0 bits (201), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 111/244 (45%)
Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
NV Y+ LID KE L+ A +L +M + G+ P+I T +V+ K+GN++ A +
Sbjct: 455 NVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLV 514
Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
+ G D Y +++ AY +G+ ++ M+ G++ + + L+ F
Sbjct: 515 GEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLH 574
Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
G + ++ N M + P + LV+ Y + A + + M G PD +
Sbjct: 575 GMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTY 634
Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
+++ + K + +A L E++ GF +TY+VL+ + + EA ++ ++
Sbjct: 635 ENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRR 694
Query: 496 LGEA 499
G A
Sbjct: 695 EGLA 698
Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 115/244 (47%), Gaps = 10/244 (4%)
Query: 195 TDKILSLEKEED---PSPLLAE-WKELLQPSRIDWINLLDRL-REQNTQLYFKVAELV-- 247
T I L KE D + LL E WK LQP+ + ++++ L + N + + +LV
Sbjct: 460 TTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIE---EAVKLVGE 516
Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
+ Y+ L+DA+ K ++ A+ ILK+M G+ P IVT VL++ + G
Sbjct: 517 FEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGM 576
Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
L+ ++ + + G P+ +NS++ Y K ++ M + G+ + Y
Sbjct: 577 LEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYEN 636
Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
L++ + +++ A + M+ + F ++ + ++L++ + + +AR FD M R G
Sbjct: 637 LVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREG 696
Query: 428 HKPD 431
D
Sbjct: 697 LAAD 700
Score = 42.7 bits (99), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 48/110 (43%)
Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
N ++ L+ + N L+ A I K M G+ PD T LV + KA N+ A F
Sbjct: 595 NATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLF 654
Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIY 365
+ ++ GF Y+ +I ++ + + D M G+ +EI+
Sbjct: 655 QEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIF 704
Score = 39.7 bits (91), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 37/74 (50%)
Query: 258 RDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFES 317
+ Y L+ H K +++A + ++M G + T +VL+ + K A+E F+
Sbjct: 632 KTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQ 691
Query: 318 LRSHGFQPDKKVYN 331
+R G DK++++
Sbjct: 692 MRREGLAADKEIFD 705
>sp|Q9FLL3|PP412_ARATH Pentatricopeptide repeat-containing protein At5g41170,
mitochondrial OS=Arabidopsis thaliana GN=At5g41170 PE=2
SV=1
Length = 527
Score = 111 bits (277), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 87/339 (25%), Positives = 157/339 (46%), Gaps = 8/339 (2%)
Query: 227 NLLDRLREQNTQLYFKVAEL-VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNE 285
NLL Q++Q Y + L + + F+ ++ ++ LI+ N +E+A ++ +M E
Sbjct: 111 NLLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVE 170
Query: 286 NGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKL 345
GI PD+V T ++ K G+++ A F+ + ++G +PD +Y S++ N+G+ +
Sbjct: 171 MGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRD 230
Query: 346 GMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVE 405
SL+ M I+ + AL+ +F + G A ++ N M P + + T L+
Sbjct: 231 ADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLIN 290
Query: 406 AYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEP 465
+ G D+AR F M G PD S+I + K +D A+ + E+ + G
Sbjct: 291 GFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTG 350
Query: 466 GPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQAL 525
TYT L+ G++ N A+++ + G P + L G KKAL
Sbjct: 351 NTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMI- 409
Query: 526 GFLEAKKEQM---GPD--DFERIINGLLAGGFLQDAQRV 559
F + +K +M P+ + +++GL G L+ A V
Sbjct: 410 -FEDMQKREMDGVAPNIWTYNVLLHGLCYNGKLEKALMV 447
Score = 86.3 bits (212), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 61/249 (24%), Positives = 105/249 (42%), Gaps = 3/249 (1%)
Query: 252 SFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRA 311
S N+ Y+ LI+ E C+++A ++ M G PD+V T L++ + K +D A
Sbjct: 277 SIAPNIFTYTSLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDA 336
Query: 312 KEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRS 371
+ F + G + Y ++I + G+P + + M++ G+ + Y LL
Sbjct: 337 MKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHC 396
Query: 372 FAQCGDVRGAGQITNIMRIEEFQ---PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGH 428
G V+ A I M+ E P + + +L+ G ++A F+ M +
Sbjct: 397 LCYNGKVKKALMIFEDMQKREMDGVAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRKREM 456
Query: 429 KPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQ 488
+I K + A+NL L G +P TYT ++ L R L +EA
Sbjct: 457 DIGIITYTIIIQGMCKAGKVKNAVNLFCSLPSKGVKPNVVTYTTMISGLFREGLKHEAHV 516
Query: 489 LLGKISELG 497
L K+ E G
Sbjct: 517 LFRKMKEDG 525
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/319 (21%), Positives = 126/319 (39%), Gaps = 2/319 (0%)
Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
+A + M E+ +P I+ T L+++ +K D + L+ G D N
Sbjct: 53 FNEALDLFTHMVESRPLPSIIDFTKLLNVIAKMKKFDVVINLCDHLQIMGVSHDLYTCNL 112
Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
++ + + QP L S + M+ G E + +L+ F + A + N M
Sbjct: 113 LMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMG 172
Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
+P + T ++++ + G + A S FD M G +PD S++ A
Sbjct: 173 IKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDAD 232
Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
+LL + K +P T+ L+D + +AE+L ++ + AP SL + +
Sbjct: 233 SLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGF 292
Query: 513 ARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASE 572
G +A Q +E K + +ING + DA ++ M +G +
Sbjct: 293 CMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNT 352
Query: 573 RLKVALISSQTFNRQRQPT 591
LI Q F + +P
Sbjct: 353 ITYTTLI--QGFGQVGKPN 369
Score = 73.6 bits (179), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 70/330 (21%), Positives = 133/330 (40%)
Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
++ D++KL++ AK + + + G+ D+ T +L++ + ++ A
Sbjct: 71 SIIDFTKLLNVIAKMKKFDVVINLCDHLQIMGVSHDLYTCNLLMNCFCQSSQPYLASSFL 130
Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
+ GF+PD + S+I + + + MS+V+ M+ GI+ +Y ++ S +
Sbjct: 131 GKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKN 190
Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
G V A + + M +P + T LV +G A S M + KPD
Sbjct: 191 GHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITF 250
Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
++I A+ K+ A L E+ + P TYT L++ ++EA Q+ +
Sbjct: 251 NALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMET 310
Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQD 555
G P SL + + + A++ + K + +I G G
Sbjct: 311 KGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNV 370
Query: 556 AQRVHGLMEAQGFAASERLKVALISSQTFN 585
AQ V M ++G + R L+ +N
Sbjct: 371 AQEVFSHMVSRGVPPNIRTYNVLLHCLCYN 400
>sp|P0C8Q3|PP326_ARATH Pentatricopeptide repeat-containing protein At4g19890
OS=Arabidopsis thaliana GN=At4g19890 PE=2 SV=1
Length = 701
Score = 109 bits (272), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 78/319 (24%), Positives = 147/319 (46%), Gaps = 5/319 (1%)
Query: 214 WKELLQPSRIDWINLLDRLREQN-TQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENC 272
WK P+ L+D L ++ T+ F++ ++ ++++ NV Y+ +I + KE+
Sbjct: 318 WK----PNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDK 373
Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
L AE + +M E G+ P++ T T L++ + KAG+ RA E + GF P+ YN+
Sbjct: 374 LNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAYELMNLMGDEGFMPNIYTYNA 433
Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
I + + L++ + G+E Y L++ + D+ A M
Sbjct: 434 AIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQNDINQALAFFCRMNKTG 493
Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
F+ + +L+ A+ + ++ F ++ LG P SMI+ Y K+ +D AL
Sbjct: 494 FEADMRLNNILIAAFCRQKKMKESERLFQLVVSLGLIPTKETYTSMISCYCKEGDIDLAL 553
Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
+++ G P TY L+ L + +++EA +L + + G +PP +V+L Y
Sbjct: 554 KYFHNMKRHGCVPDSFTYGSLISGLCKKSMVDEACKLYEAMIDRGLSPPEVTRVTLAYEY 613
Query: 513 ARAGIEKKALQALGFLEAK 531
+ A+ L L+ K
Sbjct: 614 CKRNDSANAMILLEPLDKK 632
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/300 (23%), Positives = 123/300 (41%), Gaps = 42/300 (14%)
Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
L +A ++ M G+ P +T ++ + + G ++ A+ F+ + G PD Y
Sbjct: 163 LNEAVGMVMDMQNQGLTPSSITMNCVLEIAVELGLIEYAENVFDEMSVRGVVPDSSSYKL 222
Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
M++ G+ + D +T I+R
Sbjct: 223 MVIGCFRDGK----IQEADRWLTGMIQRG------------------------------- 247
Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
F P +CTL++ A + G ++A F MI LG KP+ S+I KK + +A
Sbjct: 248 FIPDNATCTLILTALCENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAF 307
Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPP-FKIQVSLCDM 511
+L E+ ++G++P T+T L+D L + +A +L K+ P S+
Sbjct: 308 EMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGG 367
Query: 512 YARAGIEKKALQA-LGFLEAKKEQMGP--DDFERIINGLLAGGFLQDAQRVHGLMEAQGF 568
Y + E K +A + F K++ + P + + +ING G A + LM +GF
Sbjct: 368 YCK---EDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAYELMNLMGDEGF 424
>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560
OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1
Length = 915
Score = 108 bits (271), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 89/345 (25%), Positives = 159/345 (46%), Gaps = 19/345 (5%)
Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
+V Y+ LID + + A R+L MN+ G+VPD T T ++ K+ ++ A + F
Sbjct: 461 DVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLF 520
Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
+SL G P+ +Y ++I Y AG+ +++ M++ + + AL+
Sbjct: 521 DSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCAD 580
Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
G ++ A + M QPT+ + T+L+ + GD D A S F M+ G KPD
Sbjct: 581 GKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTY 640
Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
+ I Y ++ L A +++ ++ ++G P TY+ L+ G L N A +L ++ +
Sbjct: 641 TTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRD 700
Query: 496 LGEAPPFKIQVSLCDM-----YARAGIEKKALQALG----------FLEAKKEQ-MGPD- 538
G P +SL Y + + L A+ LE E + P+
Sbjct: 701 TGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTVVELLEKMVEHSVTPNA 760
Query: 539 -DFERIINGLLAGGFLQDAQRVHGLME-AQGFAASERLKVALISS 581
+E++I G+ G L+ A++V M+ +G + SE + AL+S
Sbjct: 761 KSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLSC 805
Score = 90.1 bits (222), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 77/340 (22%), Positives = 149/340 (43%), Gaps = 47/340 (13%)
Query: 224 DWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKM 283
D + +LD R+ N F E ++ + Y+ L+++ A+ +++ +++ +M
Sbjct: 158 DALYVLDLCRKMNKDERF--------ELKYKLIIGCYNTLLNSLARFGLVDEMKQVYMEM 209
Query: 284 NENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQP 343
E+ + P+I T +V+ Y K GN++ A + + G PD Y S+IM Y
Sbjct: 210 LEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDL 269
Query: 344 KLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLL 403
+ + M G R+E Y L+ + A + M+ +E PT+ + T+L
Sbjct: 270 DSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVL 329
Query: 404 VEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGF 463
+++ + +K+ +ALNL+ E+E+ G
Sbjct: 330 IKS--------------------------------LCGSERKS---EALNLVKEMEETGI 354
Query: 464 EPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQ 523
+P TYTVL+D L +A +LLG++ E G P +L + Y + G+ + A+
Sbjct: 355 KPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVD 414
Query: 524 ALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLM 563
+ +E++K + P+ R N L+ G + + G++
Sbjct: 415 VVELMESRK--LSPN--TRTYNELIKGYCKSNVHKAMGVL 450
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/274 (21%), Positives = 106/274 (38%), Gaps = 54/274 (19%)
Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN-------- 307
+ Y+ I + +E L DAE ++ KM ENG+ PD+ T + L+ Y G
Sbjct: 636 DAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVL 695
Query: 308 ---------------------------------------------LDRAKEAFESLRSHG 322
D E E + H
Sbjct: 696 KRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTVVELLEKMVEHS 755
Query: 323 FQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS-GIERSEEIYLALLRSFAQCGDVRGA 381
P+ K Y +I+ G ++ + D M + GI SE ++ ALL + A
Sbjct: 756 VTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLSCCCKLKKHNEA 815
Query: 382 GQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAA 441
++ + M P LESC +L+ + G+ ++ S F +++ G+ D+ +I
Sbjct: 816 AKVVDDMICVGHLPQLESCKVLICGLYKKGEKERGTSVFQNLLQCGYYEDELAWKIIIDG 875
Query: 442 YGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475
GK+ L++ L +EK+G + TY++L++
Sbjct: 876 VGKQGLVEAFYELFNVMEKNGCKFSSQTYSLLIE 909
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/344 (20%), Positives = 137/344 (39%), Gaps = 38/344 (11%)
Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
E+ N+ Y+K+++ + K +E+A + + K+ E G+ PD T T L+ Y + +LD
Sbjct: 211 EDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLD 270
Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
A + F + G + ++ Y +I A + M L M + Y L+
Sbjct: 271 SAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLI 330
Query: 370 RSFAQCGDVRGAGQITNIMRIEE--FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
+S CG R + + + +EE +P + + T+L+++ ++AR M+ G
Sbjct: 331 KSL--CGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKG 388
Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGP-------------------- 467
P+ ++I Y K+ +++ A++++ +E P
Sbjct: 389 LMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSNVHKAMG 448
Query: 468 --------------ATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYA 513
TY L+D R + A +LL +++ G P S+ D
Sbjct: 449 VLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLC 508
Query: 514 RAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQ 557
++ ++A LE K + +I+G G + +A
Sbjct: 509 KSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAH 552
>sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110
OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1
Length = 729
Score = 106 bits (265), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 71/312 (22%), Positives = 145/312 (46%)
Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
+S NV + +++A K+ +E L ++ E G+ PDIVT L+ YS G
Sbjct: 226 ISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGL 285
Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
++ A E ++ GF P YN++I G+ + + M+ SG+ Y +
Sbjct: 286 MEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRS 345
Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
LL + GDV ++ + MR + P L + ++ + ++G+ D+A F+ + G
Sbjct: 346 LLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAG 405
Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
PD+ +I Y +K ++ A+NL E+ + G TY ++ L + +++ EA+
Sbjct: 406 LIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEAD 465
Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
+L +++E P L D + + G + A++ ++ K+ ++ + +++G
Sbjct: 466 KLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGF 525
Query: 548 LAGGFLQDAQRV 559
G + A+ +
Sbjct: 526 GKVGDIDTAKEI 537
Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 70/321 (21%), Positives = 135/321 (42%), Gaps = 37/321 (11%)
Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
+V Y+ ++ K L +A+++ +M E + PD T T+L+ + K GNL A E F
Sbjct: 444 DVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELF 503
Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
+ ++ + D YN+++ + G + M++ I + Y L+ +
Sbjct: 504 QKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSK 563
Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
G + A ++ + M + +PT+ C +++ Y ++G+ S + MI G PD
Sbjct: 564 GHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISY 623
Query: 436 ASMIAAYGKKNLLDKALNLL--LELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
++I + ++ + KA L+ +E E+ G P TY ++ R + EAE +L K+
Sbjct: 624 NTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKM 683
Query: 494 SELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFL 553
E G P + +ING ++ L
Sbjct: 684 IERGVNPD-----------------------------------RSTYTCMINGFVSQDNL 708
Query: 554 QDAQRVHGLMEAQGFAASERL 574
+A R+H M +GF+ ++
Sbjct: 709 TEAFRIHDEMLQRGFSPDDKF 729
Score = 63.2 bits (152), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 95/220 (43%), Gaps = 2/220 (0%)
Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
+ E+ + +V Y+ L+D K ++ A+ I M I+P ++ ++LV+ G+
Sbjct: 506 MKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGH 565
Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
L A ++ + S +P + NSMI Y +G G S ++ MI+ G Y
Sbjct: 566 LAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNT 625
Query: 368 LLRSFAQCGDVRGAGQITNIMRIEE--FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR 425
L+ F + ++ A + M E+ P + + ++ + + +A MI
Sbjct: 626 LIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKMIE 685
Query: 426 LGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEP 465
G PD MI + ++ L +A + E+ + GF P
Sbjct: 686 RGVNPDRSTYTCMINGFVSQDNLTEAFRIHDEMLQRGFSP 725
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/275 (22%), Positives = 112/275 (40%), Gaps = 4/275 (1%)
Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
+L+ Y +A L A EAF LRS GF N++I + V G +L + + S
Sbjct: 170 LLIRTYVQARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEISRS 229
Query: 357 GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA 416
G+ + ++ + + G + G + ++ + P + + L+ AY G ++A
Sbjct: 230 GVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEA 289
Query: 417 RSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDW 476
+ M G P ++I K ++A + E+ + G P TY L+
Sbjct: 290 FELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLME 349
Query: 477 LGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG 536
+ + E E++ + P S+ ++ R+G KAL + F K+ +
Sbjct: 350 ACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKAL--MYFNSVKEAGLI 407
Query: 537 PDD--FERIINGLLAGGFLQDAQRVHGLMEAQGFA 569
PD+ + +I G G + A + M QG A
Sbjct: 408 PDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCA 442
Score = 53.5 bits (127), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 56/320 (17%), Positives = 121/320 (37%), Gaps = 35/320 (10%)
Query: 244 AELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYS 303
A +L + F ++ + LI + + +E A + ++++ +G+ ++ T ++V+
Sbjct: 187 AFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEISRSGVGINVYTLNIMVNALC 246
Query: 304 KAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEE 363
K G +++ ++ G PD YN++I AY + G + L++ M G
Sbjct: 247 KDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKG------ 300
Query: 364 IYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM 423
F P + + ++ + G ++A+ F M
Sbjct: 301 -----------------------------FSPGVYTYNTVINGLCKHGKYERAKEVFAEM 331
Query: 424 IRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLI 483
+R G PD S++ KK + + + ++ P ++ ++ R +
Sbjct: 332 LRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNL 391
Query: 484 NEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERI 543
++A + E G P I L Y R G+ A+ + + M + I
Sbjct: 392 DKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTI 451
Query: 544 INGLLAGGFLQDAQRVHGLM 563
++GL L +A ++ M
Sbjct: 452 LHGLCKRKMLGEADKLFNEM 471
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 73/165 (44%), Gaps = 4/165 (2%)
Query: 167 EVAEKIHERGEMILPEEPKPITGKCK-LITDKILSLEKEEDPSPLLAEWKELLQPSRIDW 225
+AE EMI + KP C +I S + S L E P I +
Sbjct: 565 HLAEAFRVWDEMI-SKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISY 623
Query: 226 INLL-DRLREQNTQLYFKVAELVLSEES-FQTNVRDYSKLIDAHAKENCLEDAERILKKM 283
L+ +RE+N F + + + E+ +V Y+ ++ ++N +++AE +L+KM
Sbjct: 624 NTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKM 683
Query: 284 NENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKK 328
E G+ PD T T +++ + NL A + + GF PD K
Sbjct: 684 IERGVNPDRSTYTCMINGFVSQDNLTEAFRIHDEMLQRGFSPDDK 728
Score = 47.0 bits (110), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/243 (17%), Positives = 100/243 (41%), Gaps = 20/243 (8%)
Query: 296 TVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMIT 355
+ ++H+ ++G L A+ + ++ NS+ + N G
Sbjct: 117 SAMIHILVRSGRLSDAQSCLLRMIRRSGVSRLEIVNSLDSTFSNCGS------------- 163
Query: 356 SGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQ 415
++ ++ L+R++ Q +R A + ++R + F ++++C L+ + + G +
Sbjct: 164 -----NDSVFDLLIRTYVQARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVEL 218
Query: 416 ARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475
A + + R G + M+ A K ++K L ++++ G P TY L+
Sbjct: 219 AWGVYQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLIS 278
Query: 476 WLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQM 535
L+ EA +L+ + G +P ++ + + G ++A + F E + +
Sbjct: 279 AYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEV--FAEMLRSGL 336
Query: 536 GPD 538
PD
Sbjct: 337 SPD 339
>sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860
OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1
Length = 819
Score = 105 bits (262), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 80/355 (22%), Positives = 154/355 (43%), Gaps = 40/355 (11%)
Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
L E+ F +V Y+ LI A A +A + KKM E+G P ++T V+++++ K G
Sbjct: 199 LQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGT 258
Query: 308 ------------------------------------LDRAKEAFESLRSHGFQPDKKVYN 331
A + FE +++ GF DK YN
Sbjct: 259 PWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYN 318
Query: 332 SMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE 391
+++ Y + +PK M +++ M+ +G S Y +L+ ++A+ G + A ++ N M +
Sbjct: 319 ALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEK 378
Query: 392 EFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKA 451
+P + + T L+ + +AG + A S F+ M G KP+ + I YG + +
Sbjct: 379 GTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEM 438
Query: 452 LNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDM 511
+ + E+ G P T+ L+ G+ + +E + ++ G P + +L
Sbjct: 439 MKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISA 498
Query: 512 YARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLME 564
Y+R G ++A+ + + PD + ++ L GG + +++V ME
Sbjct: 499 YSRCGSFEQAMTV--YRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEME 551
Score = 100 bits (248), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 77/322 (23%), Positives = 139/322 (43%), Gaps = 37/322 (11%)
Query: 245 ELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSK 304
E+VL+ F ++ Y+ LI A+A++ L++A + +M E G PD+ T T L+ + +
Sbjct: 339 EMVLN--GFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFER 396
Query: 305 AGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEI 364
AG ++ A FE +R+ G +P+ +N+ I Y N G+ M + D + G+
Sbjct: 397 AGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVT 456
Query: 365 YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMI 424
+ LL F Q G + M+ F P E+ L+ AY + G +QA + + M+
Sbjct: 457 WNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRML 516
Query: 425 RLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYT------------- 471
G PD +++AA + + +++ +L E+E +P TY
Sbjct: 517 DAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIG 576
Query: 472 ----------------------VLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLC 509
LV + L+ EAE+ ++ E G +P S+
Sbjct: 577 LMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMV 636
Query: 510 DMYARAGIEKKALQALGFLEAK 531
+Y R + KA L +++ +
Sbjct: 637 SIYGRRQMVAKANGVLDYMKER 658
Score = 92.8 bits (229), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 63/264 (23%), Positives = 124/264 (46%), Gaps = 2/264 (0%)
Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
F + Y+ L+D + K + ++A ++L +M NG P IVT L+ Y++ G LD A
Sbjct: 310 FSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAM 369
Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
E + G +PD Y +++ + AG+ + MS+ + M +G + + + A ++ +
Sbjct: 370 ELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMY 429
Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
G +I + + + P + + L+ +GQ G + F M R G P+
Sbjct: 430 GNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPER 489
Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
++I+AY + ++A+ + + G P +TY ++ L R + ++E++L +
Sbjct: 490 ETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAE 549
Query: 493 ISELGEAPPFKIQ-VSLCDMYARA 515
+ E G P ++ SL YA
Sbjct: 550 M-EDGRCKPNELTYCSLLHAYANG 572
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/313 (22%), Positives = 133/313 (42%), Gaps = 3/313 (0%)
Query: 219 QPSRIDWINLLDRLREQNTQLYFKVAELV--LSEESFQTNVRDYSKLIDAHAKENCLEDA 276
+P+ I + +L+ + T + K+ LV + + + Y+ LI + + ++A
Sbjct: 240 KPTLITYNVILNVFGKMGTP-WNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEA 298
Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
++ ++M G D VT L+ +Y K+ A + + +GF P YNS+I A
Sbjct: 299 AQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISA 358
Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
Y G M L + M G + Y LL F + G V A I MR +P
Sbjct: 359 YARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPN 418
Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
+ + ++ YG G + FD + G PD +++A +G+ + + +
Sbjct: 419 ICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFK 478
Query: 457 ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
E+++ GF P T+ L+ R +A + ++ + G P ++ AR G
Sbjct: 479 EMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGG 538
Query: 517 IEKKALQALGFLE 529
+ +++ + L +E
Sbjct: 539 MWEQSEKVLAEME 551
Score = 87.0 bits (214), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 71/313 (22%), Positives = 136/313 (43%), Gaps = 2/313 (0%)
Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
N+ ++ I + + +I ++N G+ PDIVT L+ ++ + G F
Sbjct: 418 NICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVF 477
Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
+ ++ GF P+++ +N++I AY G + M++ M+ +G+ Y +L + A+
Sbjct: 478 KEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARG 537
Query: 376 GDVRGAGQITNIMRIEEFQPT-LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
G + ++ M +P L C+LL AY + S + + +P
Sbjct: 538 GMWEQSEKVLAEMEDGRCKPNELTYCSLL-HAYANGKEIGLMHSLAEEVYSGVIEPRAVL 596
Query: 435 TASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
+++ K +LL +A EL++ GF P T +V GR Q++ +A +L +
Sbjct: 597 LKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMK 656
Query: 495 ELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQ 554
E G P SL M++R+ K+ + L + AK + + +I ++
Sbjct: 657 ERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMR 716
Query: 555 DAQRVHGLMEAQG 567
DA R+ M G
Sbjct: 717 DASRIFSEMRNSG 729
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/246 (23%), Positives = 109/246 (44%), Gaps = 11/246 (4%)
Query: 281 KKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNA 340
+ M +N +V +++ M K G + A F L+ GF D Y S+I A+ N+
Sbjct: 168 QSMLDNSVV------AIIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANS 221
Query: 341 GQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNI---MRIEEFQPTL 397
G+ + +++ M G + + Y +L F + G +IT++ M+ + P
Sbjct: 222 GRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGT--PWNKITSLVEKMKSDGIAPDA 279
Query: 398 ESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLE 457
+ L+ + +A F+ M G D +++ YGK + +A+ +L E
Sbjct: 280 YTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNE 339
Query: 458 LEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGI 517
+ +GF P TY L+ R +++EA +L +++E G P +L + RAG
Sbjct: 340 MVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGK 399
Query: 518 EKKALQ 523
+ A+
Sbjct: 400 VESAMS 405
Score = 72.4 bits (176), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/336 (18%), Positives = 143/336 (42%), Gaps = 14/336 (4%)
Query: 218 LQPSRIDWINLL-----DRLREQNTQLY--FKVAELVLSEESFQTNVRDYSKLIDAHAKE 270
L P + W LL + + + + ++ K A V E+F T LI A+++
Sbjct: 450 LSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNT-------LISAYSRC 502
Query: 271 NCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVY 330
E A + ++M + G+ PD+ T ++ ++ G +++++ + +P++ Y
Sbjct: 503 GSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTY 562
Query: 331 NSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRI 390
S++ AY N + L SL + + + IE + L+ ++C + A + + ++
Sbjct: 563 CSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKE 622
Query: 391 EEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDK 450
F P + + +V YG+ +A DYM G P S++ + + K
Sbjct: 623 RGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGK 682
Query: 451 ALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCD 510
+ +L E+ G +P +Y ++ R + +A ++ ++ G P +
Sbjct: 683 SEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIG 742
Query: 511 MYARAGIEKKALQALGFLEAKKEQMGPDDFERIING 546
YA + ++A+ + ++ + + + I++G
Sbjct: 743 SYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDG 778
Score = 67.4 bits (163), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/242 (23%), Positives = 99/242 (40%)
Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
Y L+ A+A + + +++ I P V LV + SK L A+ AF L+
Sbjct: 562 YCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELK 621
Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
GF PD NSM+ Y ++D M G S Y +L+ ++ D
Sbjct: 622 ERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFG 681
Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
+ +I + + +P + S ++ AY + A F M G PD + I
Sbjct: 682 KSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFI 741
Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
+Y ++ ++A+ ++ + K G P TY +VD +L +EA+ + + L
Sbjct: 742 GSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCKLNRKDEAKLFVEDLRNLDPH 801
Query: 500 PP 501
P
Sbjct: 802 AP 803
Score = 60.1 bits (144), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/170 (21%), Positives = 73/170 (42%)
Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
L E F ++ + ++ + + + A +L M E G P + T L++M+S++ +
Sbjct: 620 LKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSAD 679
Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
+++E + + G +PD YN++I AY + + + M SGI Y
Sbjct: 680 FGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNT 739
Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQAR 417
+ S+A A + M +P + +V+ Y + D+A+
Sbjct: 740 FIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCKLNRKDEAK 789
>sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1
PE=2 SV=1
Length = 791
Score = 105 bits (261), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/266 (25%), Positives = 124/266 (46%), Gaps = 6/266 (2%)
Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
+V Y+ +I+ KE + A +M + GI+PD+VT ++ KA +D+A E
Sbjct: 195 DVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVL 254
Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
++ +G PD YNS++ Y ++GQPK + + M + G+E Y L+ +
Sbjct: 255 NTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKN 314
Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
G A +I + M +P + + L++ Y G + D M+R G PD
Sbjct: 315 GRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVF 374
Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
+ +I AY K+ +D+A+ + ++ + G P TY ++ L + + +A ++ +
Sbjct: 375 SILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMID 434
Query: 496 LGEAPPFKIQVSL------CDMYARA 515
G +P + SL C+ + RA
Sbjct: 435 EGLSPGNIVYNSLIHGLCTCNKWERA 460
Score = 92.4 bits (228), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 117/238 (49%)
Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
+S LI A+AK+ ++ A + KM + G+ P+ VT ++ + K+G ++ A FE +
Sbjct: 374 FSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMI 433
Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
G P VYNS+I + + L+ M+ GI + + +++ S + G V
Sbjct: 434 DEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVI 493
Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
+ ++ +M +P + + L+ Y AG D+A M+ +G KP+ +++I
Sbjct: 494 ESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLI 553
Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
Y K + ++ AL L E+E G P TY +++ L + + A++L +I+E G
Sbjct: 554 NGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESG 611
Score = 92.0 bits (227), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/310 (22%), Positives = 141/310 (45%)
Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
Y+ ++ + ++A LKKM +G+ PD+VT ++L+ K G A++ F+S+
Sbjct: 269 YNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMT 328
Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
G +P+ Y +++ Y G L+D+M+ +GI ++ L+ ++A+ G V
Sbjct: 329 KRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVD 388
Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
A + + MR + P + ++ ++G + A F+ MI G P + S+I
Sbjct: 389 QAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLI 448
Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
N ++A L+LE+ G + ++D + + E+E+L + +G
Sbjct: 449 HGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVK 508
Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
P +L + Y AG +A++ L + + + + +ING ++DA +
Sbjct: 509 PNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVL 568
Query: 560 HGLMEAQGFA 569
ME+ G +
Sbjct: 569 FKEMESSGVS 578
Score = 91.3 bits (225), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/297 (23%), Positives = 139/297 (46%), Gaps = 7/297 (2%)
Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNEN---GIVPDIVTSTVLVHMYSKAGNLDRAK 312
NV Y+ L+ EN ++A +L M ++ G PD+V+ T +++ + K G+ D+A
Sbjct: 157 NVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAY 216
Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
+ + G PD YNS+I A A M +++ M+ +G+ Y ++L +
Sbjct: 217 STYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGY 276
Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
G + A MR + +P + + +LL++ + G +AR FD M + G KP+
Sbjct: 277 CSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEI 336
Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
+++ Y K L + LL + ++G P +++L+ + +++A + K
Sbjct: 337 TTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSK 396
Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGL 547
+ + G P ++ + ++G + A+ L F + E + P + + +I+GL
Sbjct: 397 MRQQGLNPNAVTYGAVIGILCKSGRVEDAM--LYFEQMIDEGLSPGNIVYNSLIHGL 451
Score = 90.1 bits (222), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 60/285 (21%), Positives = 131/285 (45%), Gaps = 4/285 (1%)
Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAE 277
++P + + L+D L + + + +++ + + Y L+ +A + L +
Sbjct: 297 VEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMH 356
Query: 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337
+L M NGI PD ++L+ Y+K G +D+A F +R G P+ Y ++I
Sbjct: 357 GLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGIL 416
Query: 338 VNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL 397
+G+ + M + MI G+ +Y +L+ C A ++ I+ + + L
Sbjct: 417 CKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEEL--ILEMLDRGICL 474
Query: 398 ESCTL--LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLL 455
+ +++++ + G ++ F+ M+R+G KP+ ++I Y +D+A+ LL
Sbjct: 475 NTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLL 534
Query: 456 LELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
+ G +P TY+ L++ ++ + +A L ++ G +P
Sbjct: 535 SGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSP 579
Score = 84.0 bits (206), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 78/328 (23%), Positives = 141/328 (42%), Gaps = 6/328 (1%)
Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
+V Y+ +I A K ++ A +L M +NG++PD +T ++H Y +G A
Sbjct: 230 DVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFL 289
Query: 316 ESLRSHGFQPDKKVYNSMIMAYV-NAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ 374
+ +RS G +PD Y S++M Y+ G+ + D M G++ Y LL+ +A
Sbjct: 290 KKMRSDGVEPDVVTY-SLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYAT 348
Query: 375 CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
G + + ++M P ++L+ AY + G DQA F M + G P+
Sbjct: 349 KGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVT 408
Query: 435 TASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
++I K ++ A+ ++ +G PG Y L+ L AE+L+ ++
Sbjct: 409 YGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEML 468
Query: 495 ELGEAPPFKIQVSLCDMYARAG--IEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGF 552
+ G S+ D + + G IE + L L K + + +ING G
Sbjct: 469 DRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNV--ITYNTLINGYCLAGK 526
Query: 553 LQDAQRVHGLMEAQGFAASERLKVALIS 580
+ +A ++ M + G + LI+
Sbjct: 527 MDEAMKLLSGMVSVGLKPNTVTYSTLIN 554
Score = 73.6 bits (179), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 67/279 (24%), Positives = 125/279 (44%), Gaps = 8/279 (2%)
Query: 216 ELLQPSRIDWINLLDRLREQNTQLYFKVAELVLS--EESFQTNVRDYSKLIDAHAKENCL 273
E L P I + +L+ L N + + EL+L + N ++ +ID+H KE +
Sbjct: 435 EGLSPGNIVYNSLIHGLCTCNK--WERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRV 492
Query: 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333
++E++ + M G+ P+++T L++ Y AG +D A + + S G +P+ Y+++
Sbjct: 493 IESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTL 552
Query: 334 IMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF 393
I Y + + + L M +SG+ Y +L+ Q A ++ +RI E
Sbjct: 553 INGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKEL--YVRITES 610
Query: 394 QPTLESCTLLVEAYGQAGD--PDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKA 451
+E T + +G + D A F + + K + R MI A K D+A
Sbjct: 611 GTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEA 670
Query: 452 LNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
+L + +G P TY ++ + + L+ E +QL
Sbjct: 671 KDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLF 709
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 74/324 (22%), Positives = 124/324 (38%), Gaps = 47/324 (14%)
Query: 288 IVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGM 347
+ PD+ T +L+ +AG LD A ++ GF+ D + ++ + M
Sbjct: 83 VTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAM 142
Query: 348 SLVDMMITS-GIERSEEIYLALLRSFAQCGDVRGAGQITNIM---RIEEFQPTLESCTLL 403
+V +T G + Y LL+ + A ++ ++M R P + S T +
Sbjct: 143 DIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTV 202
Query: 404 VEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEK--- 460
+ + + GD D+A S + M+ G PD S+IAA K +DKA+ +L + K
Sbjct: 203 INGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGV 262
Query: 461 --------------------------------DGFEPGPATYTVLVDWLGRLQLINEAEQ 488
DG EP TY++L+D+L + EA +
Sbjct: 263 MPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARK 322
Query: 489 LLGKISELGEAPPFKIQVSLCDMYARAG--IEKKALQALGFLEAKKEQMGPDD--FERII 544
+ +++ G P +L YA G +E L L + + PD F +I
Sbjct: 323 IFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDL----MVRNGIHPDHYVFSILI 378
Query: 545 NGLLAGGFLQDAQRVHGLMEAQGF 568
G + A V M QG
Sbjct: 379 CAYAKQGKVDQAMLVFSKMRQQGL 402
Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/240 (21%), Positives = 96/240 (40%)
Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
NV Y+ LI+ + +++A ++L M G+ P+ VT + L++ Y K ++ A F
Sbjct: 510 NVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLF 569
Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
+ + S G PD YN ++ + L + SG + Y +L +
Sbjct: 570 KEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKN 629
Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
A Q+ + + + + + ++++A + G D+A+ F G P+
Sbjct: 630 KLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTY 689
Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
M + LL++ L L +E +G +V L + I A L I E
Sbjct: 690 RLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYLSMIDE 749
Score = 34.3 bits (77), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 45/218 (20%), Positives = 87/218 (39%), Gaps = 3/218 (1%)
Query: 185 KPITGKCKLITDKILSLEKEEDPSPLLAEWKEL-LQPSRIDWINLLDRLREQNTQLYFKV 243
KP T + + + + ED L E + + P I + +L L + K
Sbjct: 543 KPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKE 602
Query: 244 AELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYS 303
+ ++E Q + Y+ ++ K +DA ++ + + + + T +++
Sbjct: 603 LYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALL 662
Query: 304 KAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEE 363
K G D AK+ F + S+G P+ Y M + G + L M +G
Sbjct: 663 KVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSG 722
Query: 364 IYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCT 401
+ ++R Q G++ AG T + I+E +LE+ T
Sbjct: 723 MLNFIVRELLQRGEITRAG--TYLSMIDEKHFSLEAST 758
>sp|Q9SFV9|PP218_ARATH Pentatricopeptide repeat-containing protein At3g07290,
mitochondrial OS=Arabidopsis thaliana GN=At3g07290 PE=2
SV=1
Length = 880
Score = 105 bits (261), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/330 (22%), Positives = 147/330 (44%)
Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
NV Y+ LID ++ +E+A + +KM ++ I P ++T L++ Y K G + A E
Sbjct: 335 NVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALINGYCKDGRVVPAFELL 394
Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
+ +P+ + +N ++ G+P + L+ M+ +G+ Y L+ +
Sbjct: 395 TVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCRE 454
Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
G + A ++ + M + +P + T ++ A+ + G D A + M+R G D+
Sbjct: 455 GHMNTAYKLLSSMNCFDIEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKGISLDEVTG 514
Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
++I K AL +L L K P + V++D L + + E +LGKI++
Sbjct: 515 TTLIDGVCKVGKTRDALFILETLVKMRILTTPHSLNVILDMLSKGCKVKEELAMLGKINK 574
Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQD 555
LG P +L D R+G + + L ++ + IINGL G +++
Sbjct: 575 LGLVPSVVTYTTLVDGLIRSGDITGSFRILELMKLSGCLPNVYPYTIIINGLCQFGRVEE 634
Query: 556 AQRVHGLMEAQGFAASERLKVALISSQTFN 585
A+++ M+ G + + ++ N
Sbjct: 635 AEKLLSAMQDSGVSPNHVTYTVMVKGYVNN 664
Score = 82.0 bits (201), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 82/410 (20%), Positives = 177/410 (43%), Gaps = 18/410 (4%)
Query: 157 GLDLSDPKWTEVAEKIHERG----------EMILPEEPKPITGKCKLITDKILSLEKEED 206
G S +T + + + +RG EMI P KP ++ D + K E+
Sbjct: 296 GCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMI-PRGCKPNVHTYTVLIDGLCRDGKIEE 354
Query: 207 PSPLLAEW-KELLQPSRIDWINLLD-RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLI 264
+ + + K+ + PS I + L++ ++ F++ V+ + + + NVR +++L+
Sbjct: 355 ANGVCRKMVKDRIFPSVITYNALINGYCKDGRVVPAFELLT-VMEKRACKPNVRTFNELM 413
Query: 265 DAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQ 324
+ + A +LK+M +NG+ PDIV+ VL+ + G+++ A + S+ +
Sbjct: 414 EGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTAYKLLSSMNCFDIE 473
Query: 325 PDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQI 384
PD + ++I A+ G+ + + + +M+ GI E L+ + G R A I
Sbjct: 474 PDCLTFTAIINAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCKVGKTRDALFI 533
Query: 385 TNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGK 444
+ T S ++++ + + + + +LG P +++ +
Sbjct: 534 LETLVKMRILTTPHSLNVILDMLSKGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIR 593
Query: 445 KNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKI 504
+ + +L ++ G P YT++++ L + + EAE+LL + + G +P
Sbjct: 594 SGDITGSFRILELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVT 653
Query: 505 QVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQ 554
+ Y G +AL+ + + + ++ +RI + LL G L
Sbjct: 654 YTVMVKGYVNNGKLDRALETVRAMVERGYELN----DRIYSSLLQGFVLS 699
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 80/351 (22%), Positives = 139/351 (39%)
Query: 221 SRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERIL 280
S I LL R N + KV +++ E + N YS LI + LE+A +
Sbjct: 230 SHIGTSLLLGFCRGLNLRDALKVFDVMSKEVTCAPNSVSYSILIHGLCEVGRLEEAFGLK 289
Query: 281 KKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNA 340
+M E G P T TVL+ G +D+A F+ + G +P+ Y +I
Sbjct: 290 DQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRD 349
Query: 341 GQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESC 400
G+ + + M+ I S Y AL+ + + G V A ++ +M +P + +
Sbjct: 350 GKIEEANGVCRKMVKDRIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTF 409
Query: 401 TLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEK 460
L+E + G P +A M+ G PD +I ++ ++ A LL +
Sbjct: 410 NELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTAYKLLSSMNC 469
Query: 461 DGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKK 520
EP T+T +++ + + A LG + G + +L D + G +
Sbjct: 470 FDIEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCKVGKTRD 529
Query: 521 ALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAAS 571
AL L L + P I++ L G +++ + G + G S
Sbjct: 530 ALFILETLVKMRILTTPHSLNVILDMLSKGCKVKEELAMLGKINKLGLVPS 580
>sp|Q5G1S8|PP241_ARATH Pentatricopeptide repeat-containing protein At3g18110,
chloroplastic OS=Arabidopsis thaliana GN=EMB1270 PE=2
SV=2
Length = 1440
Score = 103 bits (258), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 99/425 (23%), Positives = 186/425 (43%), Gaps = 45/425 (10%)
Query: 190 KCKLITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELVLS 249
+ K +TDKILSL+ + + +L L+Q + D+ ++ + +++ Q +V E +
Sbjct: 126 RVKFLTDKILSLKSNQFVADILD--ARLVQMTPTDYCFVVKSVGQESWQRALEVFEWLNL 183
Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
N R + ++ + N A I + E + + ++ +YS++G
Sbjct: 184 RHWHSPNARMVAAILGVLGRWNQESLAVEIFTRA-EPTVGDRVQVYNAMMGVYSRSGKFS 242
Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAG--QPKLGMSLVDMMITSGIERSEEIYLA 367
+A+E +++R G PD +N++I A + +G P L + L+DM+ SG+ Y
Sbjct: 243 KAQELVDAMRQRGCVPDLISFNTLINARLKSGGLTPNLAVELLDMVRNSGLRPDAITYNT 302
Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAG---------------- 411
LL + ++ ++ GA ++ M QP L + ++ YG+ G
Sbjct: 303 LLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEAERLFMELELKG 362
Query: 412 -DPDQARSN------------------FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
PD N + M ++G D+ ++I YGK+ LD AL
Sbjct: 363 FFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLAL 422
Query: 453 NLLLELEK-DGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDM 511
L +++ G P TYTVL+D LG+ EA L+ ++ ++G P + +L
Sbjct: 423 QLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAALMSEMLDVGIKPTLQTYSALICG 482
Query: 512 YARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLAGGFLQDAQRVHGLMEAQGFA 569
YA+AG ++A + + PD+ + +++ LL G + A ++ M + G
Sbjct: 483 YAKAGKREEAEDTFSCM--LRSGTKPDNLAYSVMLDVLLRGNETRKAWGLYRDMISDGHT 540
Query: 570 ASERL 574
S L
Sbjct: 541 PSYTL 545
Score = 103 bits (256), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 75/293 (25%), Positives = 134/293 (45%), Gaps = 3/293 (1%)
Query: 218 LQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
L+P I + LL R+ N KV E + Q ++ Y+ +I + + +A
Sbjct: 293 LRPDAITYNTLLSACSRDSNLDGAVKVFE-DMEAHRCQPDLWTYNAMISVYGRCGLAAEA 351
Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
ER+ ++ G PD VT L++ +++ N ++ KE ++ ++ GF D+ YN++I
Sbjct: 352 ERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHM 411
Query: 337 YVNAGQPKLGMSLV-DMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP 395
Y GQ L + L DM SG Y L+ S + A + + M +P
Sbjct: 412 YGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAALMSEMLDVGIKP 471
Query: 396 TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLL 455
TL++ + L+ Y +AG ++A F M+R G KPD+ + M+ + N KA L
Sbjct: 472 TLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLLRGNETRKAWGLY 531
Query: 456 LELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSL 508
++ DG P Y +++ L + ++ ++ + + EL P +I L
Sbjct: 532 RDMISDGHTPSYTLYELMILGLMKENRSDDIQKTIRDMEELCGMNPLEISSVL 584
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/255 (21%), Positives = 112/255 (43%)
Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
Y+ +I+A+ K+ + AE ++ + ++G PD+ T L+ Y++ G +RA+ F ++
Sbjct: 755 YTDIIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTMM 814
Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
G P + N ++ A G+ + +V+ + G + S+ L +L +FA+ G++
Sbjct: 815 RDGPSPTVESINILLHALCVDGRLEELYVVVEELQDMGFKISKSSILLMLDAFARAGNIF 874
Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
+I + M+ + PT+ +++E + A M K + SM+
Sbjct: 875 EVKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSML 934
Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
Y K + + +++ G EP TY L+ R + E L+ ++ LG
Sbjct: 935 KMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGLD 994
Query: 500 PPFKIQVSLCDMYAR 514
P SL + +
Sbjct: 995 PKLDTYKSLISAFGK 1009
Score = 70.9 bits (172), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/261 (21%), Positives = 113/261 (43%), Gaps = 43/261 (16%)
Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
+ +R Y +I+ K + DAE ++ +M E ++ ++ MY+ + +
Sbjct: 888 YLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTAIEDYKKTV 947
Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
+ ++ ++ G +PD+ YN++I+ Y +P+ G L+ M G++ + Y +L+ +F
Sbjct: 948 QVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGLDPKLDTYKSLISAF 1007
Query: 373 AQ--C---------------------------------GDVRGAGQITNIMRIEEFQPTL 397
+ C G A ++ +M+ +PTL
Sbjct: 1008 GKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAEKLLQMMKNAGIEPTL 1067
Query: 398 ESCTLLVEAYGQAGDPDQAR---SNF-DYMIRLGHKPDDRCTASMIAAYGKKNLLDKALN 453
+ LL+ +Y +G+P +A SN D + L P +S+I AY + + +
Sbjct: 1068 ATMHLLMVSYSSSGNPQEAEKVLSNLKDTEVELTTLP----YSSVIDAYLRSKDYNSGIE 1123
Query: 454 LLLELEKDGFEPGPATYTVLV 474
LLE++K+G EP +T V
Sbjct: 1124 RLLEMKKEGLEPDHRIWTCFV 1144
Score = 66.6 bits (161), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 66/368 (17%), Positives = 147/368 (39%), Gaps = 35/368 (9%)
Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHM-------------- 301
+++ ++ L+ A+A+ C E A I M +G P + + +L+H
Sbjct: 786 DLKTWNSLMSAYAQCGCYERARAIFNTMMRDGPSPTVESINILLHALCVDGRLEELYVVV 845
Query: 302 ---------------------YSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNA 340
+++AGN+ K+ + S+++ G+ P ++Y MI
Sbjct: 846 EELQDMGFKISKSSILLMLDAFARAGNIFEVKKIYSSMKAAGYLPTIRLYRMMIELLCKG 905
Query: 341 GQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESC 400
+ + +V M + + I+ ++L+ + D + Q+ ++ +P +
Sbjct: 906 KRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTY 965
Query: 401 TLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEK 460
L+ Y + P++ M LG P S+I+A+GK+ L++A L EL
Sbjct: 966 NTLIIMYCRDRRPEEGYLLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLS 1025
Query: 461 DGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKK 520
G + + Y ++ ++AE+LL + G P L Y+ +G ++
Sbjct: 1026 KGLKLDRSFYHTMMKISRDSGSDSKAEKLLQMMKNAGIEPTLATMHLLMVSYSSSGNPQE 1085
Query: 521 ALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALIS 580
A + L L+ + ++ + +I+ L M+ +G R+ +
Sbjct: 1086 AEKVLSNLKDTEVELTTLPYSSVIDAYLRSKDYNSGIERLLEMKKEGLEPDHRIWTCFVR 1145
Query: 581 SQTFNRQR 588
+ +F++++
Sbjct: 1146 AASFSKEK 1153
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 108/219 (49%), Gaps = 4/219 (1%)
Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
+ E + + Y+ LI + ++ E+ ++++M G+ P + T L+ + K
Sbjct: 953 IKETGLEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGLDPKLDTYKSLISAFGKQKC 1012
Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
L++A++ FE L S G + D+ Y++M+ ++G L+ MM +GIE +
Sbjct: 1013 LEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAEKLLQMMKNAGIEPTLATMHL 1072
Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
L+ S++ G+ + A ++ + ++ E + T + +++AY ++ D + M + G
Sbjct: 1073 LMVSYSSSGNPQEAEKVLSNLKDTEVELTTLPYSSVIDAYLRSKDYNSGIERLLEMKKEG 1132
Query: 428 HKPDDRCTASMI--AAYGKKNLLDKALNLLLELEKDGFE 464
+PD R + A++ K+ + + + LL LE GF+
Sbjct: 1133 LEPDHRIWTCFVRAASFSKEKI--EVMLLLKALEDIGFD 1169
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 72/346 (20%), Positives = 134/346 (38%), Gaps = 23/346 (6%)
Query: 251 ESFQTNVRDYSKLIDAH--------AKENCLEDAERILKKMNENGIVPDIVTSTVLVHMY 302
+ Q +RD +L + K C + A R LK NG + T ++ Y
Sbjct: 560 DDIQKTIRDMEELCGMNPLEISSVLVKGECFDLAARQLKVAITNGYELENDTLLSILGSY 619
Query: 303 SKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY--VNAGQPKLGMSLVDMMITSGIER 360
S +G A E E L+ H + + ++I+ + VN L D +
Sbjct: 620 SSSGRHSEAFELLEFLKEHASGSKRLITEALIVLHCKVNNLSAALDEYFADPCVHGWCFG 679
Query: 361 SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNF 420
S +Y LL A Q+ + +R+ + + C +V Y + G P+ A
Sbjct: 680 SSTMYETLLHCCVANEHYAEASQVFSDLRLSGCEASESVCKSMVVVYCKLGFPETAHQVV 739
Query: 421 DYMIRLG-HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479
+ G H +I AYGK+ L KA +++ L + G P T+ L+ +
Sbjct: 740 NQAETKGFHFACSPMYTDIIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQ 799
Query: 480 LQLINEAEQLLGKISELGEAPPFK-IQVSLCDMYARAGIEK-----KALQALGFLEAKKE 533
A + + G +P + I + L + +E+ + LQ +GF +K
Sbjct: 800 CGCYERARAIFNTMMRDGPSPTVESINILLHALCVDGRLEELYVVVEELQDMGFKISKSS 859
Query: 534 QMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
+ +++ G + + ++++ M+A G+ + RL +I
Sbjct: 860 IL------LMLDAFARAGNIFEVKKIYSSMKAAGYLPTIRLYRMMI 899
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/284 (20%), Positives = 117/284 (41%), Gaps = 9/284 (3%)
Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
Y L+ +A ++ + +G +V +Y K G + A +
Sbjct: 684 YETLLHCCVANEHYAEASQVFSDLRLSGCEASESVCKSMVVVYCKLGFPETAHQVVNQAE 743
Query: 320 SHGFQ-PDKKVYNSMIMAYVNAGQPKL---GMSLVDMMITSGIERSEEIYLALLRSFAQC 375
+ GF +Y +I AY G+ KL S+V + SG + + +L+ ++AQC
Sbjct: 744 TKGFHFACSPMYTDIIEAY---GKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQC 800
Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
G A I N M + PT+ES +L+ A G ++ + + +G K
Sbjct: 801 GCYERARAIFNTMMRDGPSPTVESINILLHALCVDGRLEELYVVVEELQDMGFKISKSSI 860
Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
M+ A+ + + + + ++ G+ P Y ++++ L + + + +AE ++ ++ E
Sbjct: 861 LLMLDAFARAGNIFEVKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEE 920
Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD 539
I S+ MY KK +Q + K+ + PD+
Sbjct: 921 ANFKVELAIWNSMLKMYTAIEDYKKTVQV--YQRIKETGLEPDE 962
>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470,
mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2
SV=1
Length = 619
Score = 102 bits (254), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 105/229 (45%), Gaps = 1/229 (0%)
Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
Y+ LID KENCL +A ++ M G PDIVT ++L++ Y KA +D F +
Sbjct: 353 YNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREIS 412
Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
S G P+ YN++++ + +G+ L M++ G+ S Y LL G++
Sbjct: 413 SKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELN 472
Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
A +I M+ + +++ A D A S F + G KPD MI
Sbjct: 473 KALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMI 532
Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV-DWLGRLQLINEAE 487
KK L +A L ++++DG P TY +L+ LG LI+ E
Sbjct: 533 GGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVE 581
Score = 86.3 bits (212), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 73/320 (22%), Positives = 131/320 (40%)
Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
+ E FQ + Y +++ K A + +KM E I +V ++++ K G+
Sbjct: 201 MVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGS 260
Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
D A F + G + D Y+S+I N G+ G ++ MI I + A
Sbjct: 261 FDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSA 320
Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
L+ F + G + A ++ N M P + L++ + + +A FD M+ G
Sbjct: 321 LIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKG 380
Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
+PD + +I +Y K +D + L E+ G P TY LV + +N A+
Sbjct: 381 CEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAK 440
Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
+L ++ G P L D G KAL+ ++ + +G + II+G+
Sbjct: 441 ELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGM 500
Query: 548 LAGGFLQDAQRVHGLMEAQG 567
+ DA + + +G
Sbjct: 501 CNASKVDDAWSLFCSLSDKG 520
Score = 82.4 bits (202), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 64/277 (23%), Positives = 125/277 (45%), Gaps = 2/277 (0%)
Query: 218 LQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
QP + + +L+RL + N+ L + + E + + +V YS +ID+ K+ +DA
Sbjct: 206 FQPDEVTYGPVLNRLCKSGNSALALDLFR-KMEERNIKASVVQYSIVIDSLCKDGSFDDA 264
Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
+ +M GI D+VT + L+ G D + + PD ++++I
Sbjct: 265 LSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDV 324
Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
+V G+ L + MIT GI Y +L+ F + + A Q+ ++M + +P
Sbjct: 325 FVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPD 384
Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
+ + ++L+ +Y +A D F + G P+ +++ + + L+ A L
Sbjct: 385 IVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQ 444
Query: 457 ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
E+ G P TY +L+D L +N+A ++ K+
Sbjct: 445 EMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKM 481
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/265 (21%), Positives = 124/265 (46%), Gaps = 10/265 (3%)
Query: 218 LQPSRIDWINLLDRLREQNT-----QLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENC 272
+ P I + +L+D ++N Q++ +L++S+ + ++ YS LI+++ K
Sbjct: 346 IAPDTITYNSLIDGFCKENCLHEANQMF----DLMVSKGC-EPDIVTYSILINSYCKAKR 400
Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
++D R+ ++++ G++P+ +T LV + ++G L+ AKE F+ + S G P Y
Sbjct: 401 VDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGI 460
Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
++ + G+ + + + M S + IY ++ V A + + +
Sbjct: 461 LLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKG 520
Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
+P + + +++ + G +A F M G PDD +I A+ + L ++
Sbjct: 521 VKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSV 580
Query: 453 NLLLELEKDGFEPGPATYTVLVDWL 477
L+ E++ GF +T +++D L
Sbjct: 581 ELIEEMKVCGFSADSSTIKMVIDML 605
Score = 68.9 bits (167), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/321 (21%), Positives = 131/321 (40%), Gaps = 4/321 (1%)
Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
++ + +S L++ E + +A ++ +M E PD+VT + L++ G + A
Sbjct: 136 YEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEAL 195
Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
+ + +GFQPD+ Y ++ +G L + L M I+ S Y ++ S
Sbjct: 196 VLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSL 255
Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
+ G A + N M ++ + + + + L+ G D MI PD
Sbjct: 256 CKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDV 315
Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
+++I + K+ L +A L E+ G P TY L+D + ++EA Q+
Sbjct: 316 VTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDL 375
Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAG 550
+ G P L + Y +A ++ F E + + P+ + ++ G
Sbjct: 376 MVSKGCEPDIVTYSILINSYCKAKRVDDGMRL--FREISSKGLIPNTITYNTLVLGFCQS 433
Query: 551 GFLQDAQRVHGLMEAQGFAAS 571
G L A+ + M ++G S
Sbjct: 434 GKLNAAKELFQEMVSRGVPPS 454
Score = 60.5 bits (145), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 61/306 (19%), Positives = 126/306 (41%)
Query: 263 LIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHG 322
+I+ + ++ L A +L + + G PD +T + LV+ + G + A + +
Sbjct: 111 MINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMK 170
Query: 323 FQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAG 382
+PD +++I G+ + L+D M+ G + E Y +L + G+ A
Sbjct: 171 QRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALAL 230
Query: 383 QITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAY 442
+ M + ++ ++++++ + G D A S F+ M G K D +S+I
Sbjct: 231 DLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGL 290
Query: 443 GKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPF 502
D +L E+ P T++ L+D + + EA++L ++ G AP
Sbjct: 291 CNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDT 350
Query: 503 KIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGL 562
SL D + + +A Q + +K + + +IN + D R+
Sbjct: 351 ITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFRE 410
Query: 563 MEAQGF 568
+ ++G
Sbjct: 411 ISSKGL 416
Score = 35.0 bits (79), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 36/192 (18%), Positives = 80/192 (41%)
Query: 388 MRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNL 447
M + + + + T+++ Y + A S +LG++PD ++++ + +
Sbjct: 96 MELNGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGR 155
Query: 448 LDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVS 507
+ +A+ L+ + + P T + L++ L ++EA L+ ++ E G P
Sbjct: 156 VSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGP 215
Query: 508 LCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQG 567
+ + ++G AL +E + + + +I+ L G DA + ME +G
Sbjct: 216 VLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKG 275
Query: 568 FAASERLKVALI 579
A +LI
Sbjct: 276 IKADVVTYSSLI 287
>sp|O64624|PP163_ARATH Pentatricopeptide repeat-containing protein At2g18940
OS=Arabidopsis thaliana GN=At2g18940 PE=2 SV=1
Length = 822
Score = 102 bits (253), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 86/361 (23%), Positives = 157/361 (43%), Gaps = 16/361 (4%)
Query: 215 KELLQPSRIDWINLLDRL-----REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAK 269
K+ + P+ I + ++D ++ +L++ + E N Y+ ++ K
Sbjct: 379 KKGVMPNAITYTTVIDAYGKAGKEDEALKLFYS-----MKEAGCVPNTCTYNAVLSLLGK 433
Query: 270 ENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKV 329
++ + ++L M NG P+ T ++ + G F ++S GF+PD+
Sbjct: 434 KSRSNEMIKMLCDMKSNGCSPNRATWNTMLALCGNKGMDKFVNRVFREMKSCGFEPDRDT 493
Query: 330 YNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMR 389
+N++I AY G + M +G Y ALL + A+ GD R + + M+
Sbjct: 494 FNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVISDMK 553
Query: 390 IEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK-PDDRCTASMIAAYGKKNLL 448
+ F+PT S +L+++ Y + G+ + I+ G P +++ A K L
Sbjct: 554 SKGFKPTETSYSLMLQCYAKGGN-YLGIERIENRIKEGQIFPSWMLLRTLLLANFKCRAL 612
Query: 449 DKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSL 508
+ +K G++P + ++ R + ++AE +L I E G +P SL
Sbjct: 613 AGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILESIREDGLSPDLVTYNSL 672
Query: 509 CDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQ 566
DMY R G KA + L LE K Q+ PD + +I G G +Q+A R+ M +
Sbjct: 673 MDMYVRRGECWKAEEILKTLE--KSQLKPDLVSYNTVIKGFCRRGLMQEAVRMLSEMTER 730
Query: 567 G 567
G
Sbjct: 731 G 731
Score = 97.8 bits (242), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 96/446 (21%), Positives = 187/446 (41%), Gaps = 60/446 (13%)
Query: 185 KPITG--------KCKLITDKILSLEKEEDPS------PLLAEWKELLQPS---RIDW-- 225
+P+TG K +L+ ++SL K D S L EW L S ++D
Sbjct: 118 QPLTGLSRFFDSVKSELLRTDLVSLVKGLDDSGHWERAVFLFEWLVLSSNSGALKLDHQV 177
Query: 226 INLLDRLREQNTQLYFKVAELVLSE---ESFQTNVRDYSKLIDAHAKENCLEDAERILKK 282
I + R+ + +Q + VA +L + + + +VR Y+ ++ A+++ E A + ++
Sbjct: 178 IEIFVRILGRESQ--YSVAAKLLDKIPLQEYLLDVRAYTTILHAYSRTGKYEKAIDLFER 235
Query: 283 MNENGIVPDIVTSTVLVHMYSKAGN----------------------------------- 307
M E G P +VT V++ ++ K G
Sbjct: 236 MKEMGPSPTLVTYNVILDVFGKMGRSWRKILGVLDEMRSKGLKFDEFTCSTVLSACAREG 295
Query: 308 -LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
L AKE F L+S G++P YN+++ + AG +S++ M + Y
Sbjct: 296 LLREAKEFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENSCPADSVTYN 355
Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
L+ ++ + G + A + +M + P + T +++AYG+AG D+A F M
Sbjct: 356 ELVAAYVRAGFSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEA 415
Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
G P+ ++++ GKK+ ++ + +L +++ +G P AT+ ++ G +
Sbjct: 416 GCVPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNTMLALCGNKGMDKFV 475
Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIING 546
++ ++ G P +L Y R G E A + G + + ++N
Sbjct: 476 NRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNA 535
Query: 547 LLAGGFLQDAQRVHGLMEAQGFAASE 572
L G + + V M+++GF +E
Sbjct: 536 LARKGDWRSGENVISDMKSKGFKPTE 561
Score = 76.3 bits (186), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/231 (21%), Positives = 110/231 (47%), Gaps = 8/231 (3%)
Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
+ E S + Y++L+ A+ + ++A +++ M + G++P+ +T T ++ Y KAG
Sbjct: 342 MEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGK 401
Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
D A + F S++ G P+ YN+++ + + ++ M ++G + +
Sbjct: 402 EDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNT 461
Query: 368 LLRSFAQCGDVRGAGQITNI----MRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM 423
+L A CG+ +G + N M+ F+P ++ L+ AYG+ G A + M
Sbjct: 462 ML---ALCGN-KGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEM 517
Query: 424 IRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474
R G +++ A +K N++ +++ GF+P +Y++++
Sbjct: 518 TRAGFNACVTTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLML 568
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/300 (20%), Positives = 124/300 (41%), Gaps = 2/300 (0%)
Query: 219 QPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAER 278
P+R W +L + + + F+ + ++ LI A+ + DA +
Sbjct: 453 SPNRATWNTMLALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASK 512
Query: 279 ILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYV 338
+ +M G + T L++ ++ G+ + ++S GF+P + Y+ M+ Y
Sbjct: 513 MYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYA 572
Query: 339 NAGQPKLGMSLVDMMITSG-IERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL 397
G LG+ ++ I G I S + LL + +C + G+ + + + ++P +
Sbjct: 573 KGGN-YLGIERIENRIKEGQIFPSWMLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDM 631
Query: 398 ESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLE 457
++ + + DQA + + G PD S++ Y ++ KA +L
Sbjct: 632 VIFNSMLSIFTRNNMYDQAEGILESIREDGLSPDLVTYNSLMDMYVRRGECWKAEEILKT 691
Query: 458 LEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGI 517
LEK +P +Y ++ R L+ EA ++L +++E G P + Y G+
Sbjct: 692 LEKSQLKPDLVSYNTVIKGFCRRGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGM 751
Score = 62.8 bits (151), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 51/281 (18%), Positives = 110/281 (39%), Gaps = 35/281 (12%)
Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
++ F V Y+ L++A A++ E ++ M G P + ++++ Y+K GN
Sbjct: 517 MTRAGFNACVTTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGN 576
Query: 308 L-------DRAKE----------------------------AFESLRSHGFQPDKKVYNS 332
+R KE AF + HG++PD ++NS
Sbjct: 577 YLGIERIENRIKEGQIFPSWMLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNS 636
Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
M+ + +++ + G+ Y +L+ + + G+ A +I + +
Sbjct: 637 MLSIFTRNNMYDQAEGILESIREDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQ 696
Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
+P L S +++ + + G +A M G +P + ++ Y + +
Sbjct: 697 LKPDLVSYNTVIKGFCRRGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGMFAEIE 756
Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
+++ + K+ P T+ ++VD R +EA + KI
Sbjct: 757 DVIECMAKNDCRPNELTFKMVVDGYCRAGKYSEAMDFVSKI 797
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 82/184 (44%), Gaps = 8/184 (4%)
Query: 241 FKVAELVLSEESF--------QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDI 292
FK L SE +F + ++ ++ ++ + N + AE IL+ + E+G+ PD+
Sbjct: 607 FKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILESIREDGLSPDL 666
Query: 293 VTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDM 352
VT L+ MY + G +A+E ++L +PD YN++I + G + + ++
Sbjct: 667 VTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCRRGLMQEAVRMLSE 726
Query: 353 MITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGD 412
M GI Y + + G + M + +P + ++V+ Y +AG
Sbjct: 727 MTERGIRPCIFTYNTFVSGYTAMGMFAEIEDVIECMAKNDCRPNELTFKMVVDGYCRAGK 786
Query: 413 PDQA 416
+A
Sbjct: 787 YSEA 790
>sp|O82178|PP186_ARATH Pentatricopeptide repeat-containing protein At2g35130
OS=Arabidopsis thaliana GN=At2g35130 PE=2 SV=1
Length = 591
Score = 101 bits (252), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 94/366 (25%), Positives = 164/366 (44%), Gaps = 13/366 (3%)
Query: 199 LSLEKEEDPSPLLAEW---KELLQPSRIDWINLLDRLREQNTQLYFKVAE---LVLSEES 252
L L K+ D L+ EW K QP I + NLL Q Q +K AE + L E
Sbjct: 129 LRLNKKWDSIILVCEWILRKSSFQPDVICF-NLLIDAYGQKFQ--YKEAESLYVQLLESR 185
Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTV----LVHMYSKAGNL 308
+ Y+ LI A+ +E AE +L +M + + P + TV + + + GN
Sbjct: 186 YVPTEDTYALLIKAYCMAGLIERAEVVLVEMQNHHVSPKTIGVTVYNAYIEGLMKRKGNT 245
Query: 309 DRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLAL 368
+ A + F+ ++ +P + YN MI Y A + + L M + + + Y AL
Sbjct: 246 EEAIDVFQRMKRDRCKPTTETYNLMINLYGKASKSYMSWKLYCEMRSHQCKPNICTYTAL 305
Query: 369 LRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGH 428
+ +FA+ G A +I ++ + +P + L+E+Y +AG P A F M +G
Sbjct: 306 VNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAGYPYGAAEIFSLMQHMGC 365
Query: 429 KPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQ 488
+PD M+ AYG+ L A + E+++ G P ++ +L+ + + + + E
Sbjct: 366 EPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKSHMLLLSAYSKARDVTKCEA 425
Query: 489 LLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLL 548
++ ++SE G P + S+ ++Y R G K + L +E + +IN
Sbjct: 426 IVKEMSENGVEPDTFVLNSMLNLYGRLGQFTKMEKILAEMENGPCTADISTYNILINIYG 485
Query: 549 AGGFLQ 554
GFL+
Sbjct: 486 KAGFLE 491
Score = 99.4 bits (246), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 71/279 (25%), Positives = 127/279 (45%), Gaps = 2/279 (0%)
Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
Y+ +I+ + K + + ++ +M + P+I T T LV+ +++ G ++A+E FE L+
Sbjct: 267 YNLMINLYGKASKSYMSWKLYCEMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQ 326
Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
G +PD VYN+++ +Y AG P + +M G E Y ++ ++ + G
Sbjct: 327 EDGLEPDVYVYNALMESYSRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHS 386
Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
A + M+ PT++S LL+ AY +A D + + M G +PD SM+
Sbjct: 387 DAEAVFEEMKRLGIAPTMKSHMLLLSAYSKARDVTKCEAIVKEMSENGVEPDTFVLNSML 446
Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
YG+ K +L E+E +TY +L++ G+ + E+L ++ E
Sbjct: 447 NLYGRLGQFTKMEKILAEMENGPCTADISTYNILINIYGKAGFLERIEELFVELKEKNFR 506
Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD 538
P S Y+R + K L+ F E PD
Sbjct: 507 PDVVTWTSRIGAYSRKKLYVKCLEV--FEEMIDSGCAPD 543
Score = 93.2 bits (230), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 71/265 (26%), Positives = 123/265 (46%), Gaps = 17/265 (6%)
Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
N+ Y+ L++A A+E E AE I +++ E+G+ PD+ L+ YS+AG A E F
Sbjct: 298 NICTYTALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAGYPYGAAEIF 357
Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
++ G +PD+ YN M+ AY AG ++ + M GI + + ++ LL ++++
Sbjct: 358 SLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKSHMLLLSAYSKA 417
Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR-LGHKPDDRC 434
DV I M +P ++ YG+ G F M + L + C
Sbjct: 418 RDVTKCEAIVKEMSENGVEPDTFVLNSMLNLYGRLG-------QFTKMEKILAEMENGPC 470
Query: 435 TAS------MIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQ 488
TA +I YGK L++ L +EL++ F P T+T + R +L + +
Sbjct: 471 TADISTYNILINIYGKAGFLERIEELFVELKEKNFRPDVVTWTSRIGAYSRKKLYVKCLE 530
Query: 489 LLGKISELGEAP---PFKIQVSLCD 510
+ ++ + G AP K+ +S C
Sbjct: 531 VFEEMIDSGCAPDGGTAKVLLSACS 555
Score = 77.4 bits (189), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 73/284 (25%), Positives = 123/284 (43%), Gaps = 16/284 (5%)
Query: 318 LRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGD 377
LR FQPD +N +I AY Q K SL ++ S +E+ Y L++++ G
Sbjct: 146 LRKSSFQPDVICFNLLIDAYGQKFQYKEAESLYVQLLESRYVPTEDTYALLIKAYCMAGL 205
Query: 378 VRGAGQITNIMRIEEFQPTLESCTLLVEAYGQA-----GDPDQARSNFDYMIRLGHKPDD 432
+ A + M+ P T+ AY + G+ ++A F M R KP
Sbjct: 206 IERAEVVLVEMQNHHVSPKTIGVTVY-NAYIEGLMKRKGNTEEAIDVFQRMKRDRCKPTT 264
Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
MI YGK + + L E+ +P TYT LV+ R L +AE++ +
Sbjct: 265 ETYNLMINLYGKASKSYMSWKLYCEMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQ 324
Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG--PD--DFERIINGLL 548
+ E G P + +L + Y+RAG A + + + MG PD + +++
Sbjct: 325 LQEDGLEPDVYVYNALMESYSRAGYPYGAAEIFSLM----QHMGCEPDRASYNIMVDAYG 380
Query: 549 AGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFNRQRQPTR 592
G DA+ V M+ G A + + + L+S+ +++ R T+
Sbjct: 381 RAGLHSDAEAVFEEMKRLGIAPTMKSHMLLLSA--YSKARDVTK 422
>sp|P0C894|PP143_ARATH Putative pentatricopeptide repeat-containing protein At2g02150
OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1
Length = 761
Score = 100 bits (250), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 89/336 (26%), Positives = 148/336 (44%), Gaps = 6/336 (1%)
Query: 258 RDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFES 317
R + L+ AK +D +R K M G P + T +++ K G+++ A+ FE
Sbjct: 228 RSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEE 287
Query: 318 LRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGD 377
++ G PD YNSMI + G+ + + M E Y AL+ F + G
Sbjct: 288 MKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGK 347
Query: 378 VRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTAS 437
+ + M+ +P + S + LV+A+ + G QA + M R+G P++ S
Sbjct: 348 LPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTS 407
Query: 438 MIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
+I A K L A L E+ + G E TYT L+D L + + EAE+L GK+ G
Sbjct: 408 LIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAG 467
Query: 498 EAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQD 555
P +L + +A +AL+ L E K + PD + I GL + ++
Sbjct: 468 VIPNLASYNALIHGFVKAKNMDRALELLN--ELKGRGIKPDLLLYGTFIWGLCSLEKIEA 525
Query: 556 AQRVHGLMEAQGFAASERLKVALISSQTFNRQRQPT 591
A+ V M+ G A+ + L+ + + + PT
Sbjct: 526 AKVVMNEMKECGIKANSLIYTTLMDA--YFKSGNPT 559
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/282 (23%), Positives = 134/282 (47%), Gaps = 3/282 (1%)
Query: 218 LQPSRIDWINLLD-RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
L P+ + +L+D + N F++ +L + + NV Y+ LID +++A
Sbjct: 398 LVPNEYTYTSLIDANCKIGNLSDAFRLGNEML-QVGVEWNVVTYTALIDGLCDAERMKEA 456
Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
E + KM+ G++P++ + L+H + KA N+DRA E L+ G +PD +Y + I
Sbjct: 457 EELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWG 516
Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
+ + + +++ M GI+ + IY L+ ++ + G+ + + M+ + + T
Sbjct: 517 LCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVT 576
Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIR-LGHKPDDRCTASMIAAYGKKNLLDKALNLL 455
+ + +L++ + +A F+ + G + + +MI K N ++ A L
Sbjct: 577 VVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLF 636
Query: 456 LELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
++ + G P YT L+D + + EA L K++E+G
Sbjct: 637 EQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIG 678
Score = 84.3 bits (207), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/288 (22%), Positives = 131/288 (45%)
Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
Y+ +ID K L+D ++M + PD++T L++ + K G L E + ++
Sbjct: 300 YNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMK 359
Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
+G +P+ Y++++ A+ G + + M G+ +E Y +L+ + + G++
Sbjct: 360 GNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLS 419
Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
A ++ N M + + + T L++ A +A F M G P+ ++I
Sbjct: 420 DAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALI 479
Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
+ K +D+AL LL EL+ G +P Y + L L+ I A+ ++ ++ E G
Sbjct: 480 HGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIK 539
Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
I +L D Y ++G + L L ++ ++ F +I+GL
Sbjct: 540 ANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGL 587
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 90/208 (43%), Gaps = 1/208 (0%)
Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
+ E + N Y+ L+DA+ K + +L +M E I +VT VL+ K
Sbjct: 533 MKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKL 592
Query: 308 LDRAKEAFESLRS-HGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
+ +A + F + + G Q + ++ +MI Q + +L + M+ G+ Y
Sbjct: 593 VSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYT 652
Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
+L+ + G+V A + + M + L + T LV +ARS + MI
Sbjct: 653 SLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGE 712
Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNL 454
G PD+ S++ + + +D+A+ L
Sbjct: 713 GIHPDEVLCISVLKKHYELGCIDEAVEL 740
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 83/173 (47%), Gaps = 6/173 (3%)
Query: 210 LLAEWKEL-LQPSRIDWINLLDRLREQNTQLYFKVAEL---VLSEESFQTNVRDYSKLID 265
LL E KEL ++ + + + L+D L + +L K + + ++ Q N ++ +ID
Sbjct: 564 LLDEMKELDIEVTVVTFCVLIDGLCKN--KLVSKAVDYFNRISNDFGLQANAAIFTAMID 621
Query: 266 AHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQP 325
K+N +E A + ++M + G+VPD T L+ K GN+ A + + G +
Sbjct: 622 GLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKL 681
Query: 326 DKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378
D Y S++ + Q + S ++ MI GI E + +++L+ + G +
Sbjct: 682 DLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPDEVLCISVLKKHYELGCI 734
Score = 50.4 bits (119), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/222 (19%), Positives = 88/222 (39%), Gaps = 4/222 (1%)
Query: 364 IYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM 423
++ AL G + A Q + M+ P SC L+ + + G D + F M
Sbjct: 194 VFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDM 253
Query: 424 IRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLI 483
I G +P MI K+ ++ A L E++ G P TY ++D G++ +
Sbjct: 254 IGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRL 313
Query: 484 NEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFE 541
++ ++ ++ P +L + + + G L+ + E K + P+ +
Sbjct: 314 DDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEF--YREMKGNGLKPNVVSYS 371
Query: 542 RIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQT 583
+++ G +Q A + + M G +E +LI +
Sbjct: 372 TLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANC 413
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/238 (20%), Positives = 93/238 (39%), Gaps = 18/238 (7%)
Query: 198 ILSLEKEEDPSPLLAEWKEL-LQPSRIDWINLLDRLREQNTQLYFKVAELV--------L 248
+ SLEK E ++ E KE ++ + + + L+D YFK +
Sbjct: 517 LCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDA--------YFKSGNPTEGLHLLDEM 568
Query: 249 SEESFQTNVRDYSKLIDAHAKENCLEDAERILKKM-NENGIVPDIVTSTVLVHMYSKAGN 307
E + V + LID K + A ++ N+ G+ + T ++ K
Sbjct: 569 KELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQ 628
Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
++ A FE + G PD+ Y S++ G ++L D M G++ Y +
Sbjct: 629 VEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTS 688
Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR 425
L+ + C ++ A M E P C +++ + + G D+A Y+++
Sbjct: 689 LVWGLSHCNQLQKARSFLEEMIGEGIHPDEVLCISVLKKHYELGCIDEAVELQSYLMK 746
>sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300,
mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2
SV=1
Length = 637
Score = 100 bits (250), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 118/245 (48%)
Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
NV +S LID+ KE L +AE + K+M GI PD +T T L+ + K +LD+A +
Sbjct: 332 NVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMV 391
Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
+ + S G P+ + +N +I Y A + G+ L M G+ Y L++ F +
Sbjct: 392 DLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCEL 451
Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
G + A ++ M + P + + +L++ G+ ++A F+ + + + D
Sbjct: 452 GKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIY 511
Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
+I + +D A +L L G +PG TY +++ L + ++EAE L K+ E
Sbjct: 512 NIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEE 571
Query: 496 LGEAP 500
G AP
Sbjct: 572 DGHAP 576
Score = 94.0 bits (232), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 77/309 (24%), Positives = 128/309 (41%)
Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
+ E Q N Y +++ K A +L+KM E I D V ++++ K G+
Sbjct: 219 MVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGS 278
Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
LD A F + G + YN +I + NAG+ G L+ MI I + +
Sbjct: 279 LDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSV 338
Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
L+ SF + G +R A ++ M P + T L++ + + D+A D M+ G
Sbjct: 339 LIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKG 398
Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
P+ R +I Y K N +D L L ++ G TY L+ L +N A+
Sbjct: 399 CDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAK 458
Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
+L ++ P L D G +KAL+ +E K ++ + II+G+
Sbjct: 459 ELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGM 518
Query: 548 LAGGFLQDA 556
+ DA
Sbjct: 519 CNASKVDDA 527
Score = 82.8 bits (203), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 61/267 (22%), Positives = 128/267 (47%), Gaps = 4/267 (1%)
Query: 218 LQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
+ P I + +L+D +E + ++ +L++S+ N+R ++ LI+ + K N ++D
Sbjct: 364 IAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGC-DPNIRTFNILINGYCKANRIDDG 422
Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
+ +KM+ G+V D VT L+ + + G L+ AKE F+ + S P+ Y ++
Sbjct: 423 LELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDG 482
Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
+ G+ + + + + + S +E IY ++ V A + + ++ +P
Sbjct: 483 LCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPG 542
Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
+++ +++ + G +A F M GH PD +I A+ K++ L+
Sbjct: 543 VKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIE 602
Query: 457 ELEKDGFEPGPATYTVLVDWL--GRLQ 481
EL++ GF +T +++D L GRL+
Sbjct: 603 ELKRCGFSVDASTIKMVIDMLSDGRLK 629
Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/322 (22%), Positives = 127/322 (39%)
Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
+ E + + + YS +ID K L++A + +M GI +I+T +L+ + AG
Sbjct: 254 MEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGR 313
Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
D + + P+ ++ +I ++V G+ + L MI GI Y +
Sbjct: 314 WDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTS 373
Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
L+ F + + A Q+ ++M + P + + +L+ Y +A D F M G
Sbjct: 374 LIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRG 433
Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
D ++I + + L+ A L E+ P TY +L+D L +A
Sbjct: 434 VVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKAL 493
Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
++ KI + I + A A L K + G + +I GL
Sbjct: 494 EIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGL 553
Query: 548 LAGGFLQDAQRVHGLMEAQGFA 569
G L +A+ + ME G A
Sbjct: 554 CKKGPLSEAELLFRKMEEDGHA 575
Score = 72.8 bits (177), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 59/263 (22%), Positives = 113/263 (42%)
Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
++ N +S LI+ E + +A ++ +M E G PD++T LV+ +G A
Sbjct: 154 YEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAM 213
Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
+ + +G QP+ Y ++ +GQ L M L+ M I+ Y ++
Sbjct: 214 LLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGL 273
Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
+ G + A + N M ++ + + +L+ + AG D MI+ P+
Sbjct: 274 CKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNV 333
Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
+ +I ++ K+ L +A L E+ G P TYT L+D + +++A Q++
Sbjct: 334 VTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDL 393
Query: 493 ISELGEAPPFKIQVSLCDMYARA 515
+ G P + L + Y +A
Sbjct: 394 MVSKGCDPNIRTFNILINGYCKA 416
Score = 69.3 bits (168), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 76/355 (21%), Positives = 147/355 (41%), Gaps = 8/355 (2%)
Query: 220 PSRIDWINLLDRLREQNTQLYFKVAELV--LSEESFQTNVRDYSKLIDAHAKENCLEDAE 277
P+ ID+ L + + T+ Y V L + + N+ S +I+ + L A
Sbjct: 86 PTVIDFSRLFSAIAK--TKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAF 143
Query: 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337
+ K+ + G P+ +T + L++ G + A E + + G +PD N+++
Sbjct: 144 SAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGL 203
Query: 338 VNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL 397
+G+ M L+D M+ G + + Y +L + G A ++ + ++EE L
Sbjct: 204 CLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMEL--LRKMEERNIKL 261
Query: 398 ESC--TLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLL 455
++ +++++ + G D A + F+ M G + +I + D LL
Sbjct: 262 DAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLL 321
Query: 456 LELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARA 515
++ K P T++VL+D + + EAE+L ++ G AP SL D + +
Sbjct: 322 RDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKE 381
Query: 516 GIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAA 570
KA Q + + +K F +ING + D + M +G A
Sbjct: 382 NHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVA 436
Score = 53.1 bits (126), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 61/324 (18%), Positives = 122/324 (37%), Gaps = 35/324 (10%)
Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
V D+S+L A AK + + K+M GI ++ T +++++ + + L A A
Sbjct: 87 TVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSAM 146
Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
+ G++P+ ++++I G+ + LVD M+ G
Sbjct: 147 GKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMG------------------ 188
Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
+P L + LV +G +A D M+ G +P+
Sbjct: 189 -----------------HKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTY 231
Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
++ K A+ LL ++E+ + Y++++D L + ++ A L ++
Sbjct: 232 GPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEM 291
Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQD 555
G L + AG + L + +K F +I+ + G L++
Sbjct: 292 KGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLRE 351
Query: 556 AQRVHGLMEAQGFAASERLKVALI 579
A+ +H M +G A +LI
Sbjct: 352 AEELHKEMIHRGIAPDTITYTSLI 375
>sp|Q9LYT2|PP287_ARATH Pentatricopeptide repeat-containing protein At3g59040
OS=Arabidopsis thaliana GN=At3g59040 PE=2 SV=2
Length = 583
Score = 99.8 bits (247), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 68/281 (24%), Positives = 135/281 (48%), Gaps = 6/281 (2%)
Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
VLS+ NV Y+ L++++ + +AE I ++M +G P +T +++ + +
Sbjct: 164 VLSKMGSTPNVISYTALMESYGRGGKCNNAEAIFRRMQSSGPEPSAITYQIILKTFVEGD 223
Query: 307 NLDRAKEAFESL---RSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEE 363
A+E FE+L + +PD+K+Y+ MI Y AG + + M+ G+ +S
Sbjct: 224 KFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNYEKARKVFSSMVGKGVPQSTV 283
Query: 364 IYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM 423
Y +L+ SF + +I + M+ + QP + S LL++AYG+A ++A S F+ M
Sbjct: 284 TYNSLM-SFETS--YKEVSKIYDQMQRSDIQPDVVSYALLIKAYGRARREEEALSVFEEM 340
Query: 424 IRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLI 483
+ G +P + ++ A+ ++++A + + +D P +YT ++ +
Sbjct: 341 LDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDM 400
Query: 484 NEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQA 524
AE+ +I G P +L YA+A +K ++
Sbjct: 401 EGAEKFFKRIKVDGFEPNIVTYGTLIKGYAKANDVEKMMEV 441
Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 79/328 (24%), Positives = 145/328 (44%), Gaps = 12/328 (3%)
Query: 169 AEKIHERGEMILPEEPKPITGKCKLIT----DKILSLEKEEDPSPLLAEWKELLQPSRID 224
AE I R + PE P IT + L T DK E EE LL E K L+P +
Sbjct: 193 AEAIFRRMQSSGPE-PSAITYQIILKTFVEGDKFK--EAEEVFETLLDEKKSPLKPDQKM 249
Query: 225 WINLLDRLREQ-NTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKM 283
+ ++ ++ N + KV ++ + Q+ V Y+ L+ + E ++ +I +M
Sbjct: 250 YHMMIYMYKKAGNYEKARKVFSSMVGKGVPQSTV-TYNSLM---SFETSYKEVSKIYDQM 305
Query: 284 NENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQP 343
+ I PD+V+ +L+ Y +A + A FE + G +P K YN ++ A+ +G
Sbjct: 306 QRSDIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMV 365
Query: 344 KLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLL 403
+ ++ M I Y +L ++ D+ GA + ++++ F+P + + L
Sbjct: 366 EQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGTL 425
Query: 404 VEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGF 463
++ Y +A D ++ ++ M G K + +++ A G+ AL E+E G
Sbjct: 426 IKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTIMDASGRCKNFGSALGWYKEMESCGV 485
Query: 464 EPGPATYTVLVDWLGRLQLINEAEQLLG 491
P VL+ + EA++L G
Sbjct: 486 PPDQKAKNVLLSLASTQDELEEAKELTG 513
>sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590
OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1
Length = 634
Score = 99.8 bits (247), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 70/251 (27%), Positives = 113/251 (45%)
Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
E+ N+ ++ LIDA KE +AE++ M + I PDI T LV+ + LD
Sbjct: 323 EKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLD 382
Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
+AK+ FE + S PD YN++I + + + + G L M G+ Y L+
Sbjct: 383 KAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLI 442
Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
+ GD A ++ M + P + + ++L++ G ++A FDYM + K
Sbjct: 443 QGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIK 502
Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
D +MI K +D +L L G +P TY ++ L +L+ EA L
Sbjct: 503 LDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYAL 562
Query: 490 LGKISELGEAP 500
L K+ E G P
Sbjct: 563 LKKMKEDGPLP 573
Score = 77.0 bits (188), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 63/281 (22%), Positives = 121/281 (43%), Gaps = 7/281 (2%)
Query: 198 ILSLEKEEDPSPLLAEWKEL-LQPSRIDWINLLDRLREQNTQLYFKVAELVLSE---ESF 253
+ S + D S LL++ E + P+ + + L+D ++ F AE + + S
Sbjct: 305 LCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGK---FVEAEKLYDDMIKRSI 361
Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
++ Y+ L++ + L+ A+++ + M PD+VT L+ + K+ ++ E
Sbjct: 362 DPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTE 421
Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
F + G D Y ++I + G + M++ G+ Y LL
Sbjct: 422 LFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLC 481
Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
G + A ++ + M+ E + + T ++E +AG D F + G KP+
Sbjct: 482 NNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVV 541
Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474
+MI+ K LL +A LL ++++DG P TY L+
Sbjct: 542 TYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLI 582
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 76/376 (20%), Positives = 149/376 (39%), Gaps = 10/376 (2%)
Query: 219 QPSRIDWINLLDRLREQNTQLYFKVAELV-----LSEESFQTNVRDYSKLIDAHAKENCL 273
+P I + L+ L N K +E V + + Q N+ Y +++ K
Sbjct: 187 RPDTITFTTLIHGLFLHN-----KASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDT 241
Query: 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333
+ A +L KM I D+V ++ K ++D A F+ + + G +P+ Y+S+
Sbjct: 242 DLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSL 301
Query: 334 IMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF 393
I + G+ L+ MI I + + AL+ +F + G A ++ + M
Sbjct: 302 ISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSI 361
Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALN 453
P + + LV + D+A+ F++M+ PD ++I + K ++
Sbjct: 362 DPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTE 421
Query: 454 LLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYA 513
L E+ G TYT L+ L + A+++ ++ G P L D
Sbjct: 422 LFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLC 481
Query: 514 RAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASER 573
G +KAL+ +++ + ++ + +I G+ G + D + + +G +
Sbjct: 482 NNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVV 541
Query: 574 LKVALISSQTFNRQRQ 589
+IS R Q
Sbjct: 542 TYNTMISGLCSKRLLQ 557
Score = 70.5 bits (171), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 69/320 (21%), Positives = 135/320 (42%), Gaps = 6/320 (1%)
Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
+ E ++ + ++ LI N +A ++ +M + G P++VT V+V+ K G+
Sbjct: 181 MVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGD 240
Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
D A + + + D ++N++I + ++L M T GI + Y +
Sbjct: 241 TDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSS 300
Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
L+ G A Q+ + M ++ P L + L++A+ + G +A +D MI+
Sbjct: 301 LISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRS 360
Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLL-LELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
PD S++ + + LDKA + + KD F P TY L+ + + + +
Sbjct: 361 IDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCF-PDVVTYNTLIKGFCKSKRVEDG 419
Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERII 544
+L ++S G +L G A + F + + + PD + ++
Sbjct: 420 TELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKV--FKQMVSDGVPPDIMTYSILL 477
Query: 545 NGLLAGGFLQDAQRVHGLME 564
+GL G L+ A V M+
Sbjct: 478 DGLCNNGKLEKALEVFDYMQ 497
Score = 70.1 bits (170), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 69/315 (21%), Positives = 132/315 (41%), Gaps = 8/315 (2%)
Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
++ +++KL+ A AK + + +KM IV + T +L++ + + + A
Sbjct: 84 SIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALALL 143
Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
+ G++P +S++ Y + + ++LVD M+ G + L+
Sbjct: 144 GKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLH 203
Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
A + + M QP L + ++V + GD D A + + M + D
Sbjct: 204 NKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIF 263
Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
++I + K +D ALNL E+E G P TY+ L+ L ++A QLL + E
Sbjct: 264 NTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIE 323
Query: 496 LGEAPPFKIQVSLCDMYARAG--IEKKALQALGFLEAKKEQMGPDDF--ERIINGLLAGG 551
P +L D + + G +E + L + + K + PD F ++NG
Sbjct: 324 KKINPNLVTFNALIDAFVKEGKFVEAEKL----YDDMIKRSIDPDIFTYNSLVNGFCMHD 379
Query: 552 FLQDAQRVHGLMEAQ 566
L A+++ M ++
Sbjct: 380 RLDKAKQMFEFMVSK 394
Score = 47.0 bits (110), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 60/138 (43%)
Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
++ YS L+D LE A + M ++ I DI T ++ KAG +D + F
Sbjct: 469 DIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLF 528
Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
SL G +P+ YN+MI + + +L+ M G + Y L+R+ +
Sbjct: 529 CSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRD 588
Query: 376 GDVRGAGQITNIMRIEEF 393
GD + ++ MR F
Sbjct: 589 GDKAASAELIREMRSCRF 606
Score = 38.5 bits (88), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 40/79 (50%)
Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
LS + + NV Y+ +I + L++A +LKKM E+G +P+ T L+ + + G+
Sbjct: 531 LSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGD 590
Query: 308 LDRAKEAFESLRSHGFQPD 326
+ E +RS F D
Sbjct: 591 KAASAELIREMRSCRFVGD 609
>sp|Q8S8P6|PP180_ARATH Pentatricopeptide repeat-containing protein At2g32630
OS=Arabidopsis thaliana GN=At2g32630 PE=3 SV=1
Length = 624
Score = 99.0 bits (245), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 76/335 (22%), Positives = 145/335 (43%)
Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
V+ ++ N Y+ L++ K + DAE++ +M E GI D+ T L+ + G
Sbjct: 284 VMKKDGVVYNKVTYTLLMELSVKNGKMSDAEKLFDEMRERGIESDVHVYTSLISWNCRKG 343
Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
N+ RA F+ L G P Y ++I G+ L++ M + G+ ++ ++
Sbjct: 344 NMKRAFLLFDELTEKGLSPSSYTYGALIDGVCKVGEMGAAEILMNEMQSKGVNITQVVFN 403
Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
L+ + + G V A I ++M + FQ + +C + + + D+A+ M+
Sbjct: 404 TLIDGYCRKGMVDEASMIYDVMEQKGFQADVFTCNTIASCFNRLKRYDEAKQWLFRMMEG 463
Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
G K ++I Y K+ +++A L +E+ G +P TY V++ + I EA
Sbjct: 464 GVKLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKGVQPNAITYNVMIYAYCKQGKIKEA 523
Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIING 546
+L + G P SL A +A++ + K + +I+G
Sbjct: 524 RKLRANMEANGMDPDSYTYTSLIHGECIADNVDEAMRLFSEMGLKGLDQNSVTYTVMISG 583
Query: 547 LLAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
L G +A ++ M+ +G+ ++ ALI S
Sbjct: 584 LSKAGKSDEAFGLYDEMKRKGYTIDNKVYTALIGS 618
Score = 99.0 bits (245), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 79/323 (24%), Positives = 146/323 (45%), Gaps = 4/323 (1%)
Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
Y+ +I+A+ K+ E +LK M ++G+V + VT T+L+ + K G + A++ F+ +R
Sbjct: 262 YNTIINAYVKQRDFSGVEGVLKVMKKDGVVYNKVTYTLLMELSVKNGKMSDAEKLFDEMR 321
Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
G + D VY S+I G K L D + G+ S Y AL+ + G++
Sbjct: 322 ERGIESDVHVYTSLISWNCRKGNMKRAFLLFDELTEKGLSPSSYTYGALIDGVCKVGEMG 381
Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
A + N M+ + T L++ Y + G D+A +D M + G + D ++
Sbjct: 382 AAEILMNEMQSKGVNITQVVFNTLIDGYCRKGMVDEASMIYDVMEQKGFQADVFTCNTIA 441
Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
+ + + D+A L + + G + +YT L+D + + EA++L ++S G
Sbjct: 442 SCFNRLKRYDEAKQWLFRMMEGGVKLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKGVQ 501
Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLAGGFLQDAQ 557
P + Y + G K+A + +EA M PD + +I+G + +A
Sbjct: 502 PNAITYNVMIYAYCKQGKIKEARKLRANMEA--NGMDPDSYTYTSLIHGECIADNVDEAM 559
Query: 558 RVHGLMEAQGFAASERLKVALIS 580
R+ M +G + +IS
Sbjct: 560 RLFSEMGLKGLDQNSVTYTVMIS 582
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/263 (22%), Positives = 107/263 (40%), Gaps = 39/263 (14%)
Query: 272 CLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYN 331
CLE I ++M ++G+ + + T++V + G ++++K+ + G +P+ YN
Sbjct: 208 CLE----IFRRMVDSGVKITVYSLTIVVEGLCRRGEVEKSKKLIKEFSVKGIKPEAYTYN 263
Query: 332 SMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE 391
++I AYV R F+ G + +M+ +
Sbjct: 264 TIINAYVKQ-----------------------------RDFS------GVEGVLKVMKKD 288
Query: 392 EFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKA 451
+ TLL+E + G A FD M G + D S+I+ +K + +A
Sbjct: 289 GVVYNKVTYTLLMELSVKNGKMSDAEKLFDEMRERGIESDVHVYTSLISWNCRKGNMKRA 348
Query: 452 LNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDM 511
L EL + G P TY L+D + ++ + AE L+ ++ G + +L D
Sbjct: 349 FLLFDELTEKGLSPSSYTYGALIDGVCKVGEMGAAEILMNEMQSKGVNITQVVFNTLIDG 408
Query: 512 YARAGIEKKALQALGFLEAKKEQ 534
Y R G+ +A +E K Q
Sbjct: 409 YCRKGMVDEASMIYDVMEQKGFQ 431
Score = 56.2 bits (134), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 78/374 (20%), Positives = 157/374 (41%), Gaps = 46/374 (12%)
Query: 234 EQNTQLYFK----VAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIV 289
+ N L F V LVLSE + T ++C+ D ++L++ E+ +
Sbjct: 51 QSNPSLLFNLNSNVTRLVLSEPTLPT--------------QSCI-DFFKLLREF-ESNLK 94
Query: 290 PDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGF--QPDKKVYNSMI------------- 334
PD+ L H + + S+ + GF +P +++ ++M+
Sbjct: 95 PDLTAVVTLSHRLYSNRRFNEMRSLLNSVVNDGFYKRPVEELGSAMVDCDISEEKFEFFE 154
Query: 335 -------MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNI 387
YV+ G + G+ + D M+ G+ E + L + + + +I
Sbjct: 155 KFFDLVFRVYVDNGMFEEGLRVFDYMVKKGLSIDERSCIVFLVAAKKRRRIDLCLEIFRR 214
Query: 388 MRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNL 447
M + T+ S T++VE + G+ ++++ G KP+ ++I AY K+
Sbjct: 215 MVDSGVKITVYSLTIVVEGLCRRGEVEKSKKLIKEFSVKGIKPEAYTYNTIINAYVKQRD 274
Query: 448 LDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVS 507
+L ++KDG TYT+L++ + +++AE+L ++ E G + S
Sbjct: 275 FSGVEGVLKVMKKDGVVYNKVTYTLLMELSVKNGKMSDAEKLFDEMRERGIESDVHVYTS 334
Query: 508 LCDMYARAGIEKKALQALGFLEAKKEQMGPDDFER--IINGLLAGGFLQDAQRVHGLMEA 565
L R G K+A L F E ++ + P + +I+G+ G + A+ + M++
Sbjct: 335 LISWNCRKGNMKRAF--LLFDELTEKGLSPSSYTYGALIDGVCKVGEMGAAEILMNEMQS 392
Query: 566 QGFAASERLKVALI 579
+G ++ + LI
Sbjct: 393 KGVNITQVVFNTLI 406
>sp|Q9LR67|PPR9_ARATH Pentatricopeptide repeat-containing protein At1g03560,
mitochondrial OS=Arabidopsis thaliana GN=At1g03560 PE=2
SV=1
Length = 660
Score = 99.0 bits (245), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 83/335 (24%), Positives = 142/335 (42%), Gaps = 38/335 (11%)
Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
F V + LI + K +E+ + +KM ENGI P + T L++ A +D A+
Sbjct: 183 FPMTVSAANALIKSFGKLGMVEELLWVWRKMKENGIEPTLYTYNFLMNGLVSAMFVDSAE 242
Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
FE + S +PD YN+MI Y AGQ + M + M T G E + Y+ ++++
Sbjct: 243 RVFEVMESGRIKPDIVTYNTMIKGYCKAGQTQKAMEKLRDMETRGHEADKITYMTMIQAC 302
Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
D + M + Q + +L++ + G ++ + F+ MIR G KP+
Sbjct: 303 YADSDFGSCVALYQEMDEKGIQVPPHAFSLVIGGLCKEGKLNEGYTVFENMIRKGSKPNV 362
Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTV-------------------- 472
+I Y K ++ A+ LL + +GF+P TY+V
Sbjct: 363 AIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFHT 422
Query: 473 ---------------LVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGI 517
L+D LG+ ++EAE+L ++SE G +L D + +
Sbjct: 423 CRFDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTK--- 479
Query: 518 EKKALQALGFLEAKKEQMGPDDFERIINGLLAGGF 552
+K +A+ + +E+ G D LL+G F
Sbjct: 480 HRKVDEAIALFKRMEEEEGCDQTVYTYTILLSGMF 514
Score = 85.1 bits (209), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 79/286 (27%), Positives = 130/286 (45%), Gaps = 9/286 (3%)
Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
NV Y+ LID +AK +EDA R+L +M + G PD+VT +V+V+ K G ++ A + F
Sbjct: 361 NVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYF 420
Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
+ R G + Y+S+I AG+ L + M G R Y AL+ +F +
Sbjct: 421 HTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKH 480
Query: 376 GDVRGAGQITNIMRIEE-FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
V A + M EE T+ + T+L+ + ++A +D MI G P C
Sbjct: 481 RKVDEAIALFKRMEEEEGCDQTVYTYTILLSGMFKEHRNEEALKLWDMMIDKGITPTAAC 540
Query: 435 TASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
++ + +A +L EL G A +++ L + I EA +L I+
Sbjct: 541 FRALSTGLCLSGKVARACKILDELAPMGVILDAACED-MINTLCKAGRIKEACKLADGIT 599
Query: 495 ELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAK----KEQMG 536
E G P +I+ + + + G KA A+ + +K E+MG
Sbjct: 600 ERGREVPGRIRTVMINALRKVG---KADLAMKLMHSKIGIGYERMG 642
Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/284 (20%), Positives = 117/284 (41%), Gaps = 4/284 (1%)
Query: 298 LVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSG 357
LV + + A ++DR + ++ F N++I ++ G + + + M +G
Sbjct: 158 LVDVLALAKDVDRIRFVSSEIKKFEFPMTVSAANALIKSFGKLGMVEELLWVWRKMKENG 217
Query: 358 IERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQAR 417
IE + Y L+ V A ++ +M +P + + +++ Y +AG +A
Sbjct: 218 IEPTLYTYNFLMNGLVSAMFVDSAERVFEVMESGRIKPDIVTYNTMIKGYCKAGQTQKAM 277
Query: 418 SNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
M GH+ D +MI A + + L E+++ G + P +++++ L
Sbjct: 278 EKLRDMETRGHEADKITYMTMIQACYADSDFGSCVALYQEMDEKGIQVPPHAFSLVIGGL 337
Query: 478 GRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGP 537
+ +NE + + G P I L D YA++G + A++ L E P
Sbjct: 338 CKEGKLNEGYTVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLH--RMIDEGFKP 395
Query: 538 D--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
D + ++NGL G +++A G A + +LI
Sbjct: 396 DVVTYSVVVNGLCKNGRVEEALDYFHTCRFDGLAINSMFYSSLI 439
Score = 32.3 bits (72), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 60/163 (36%), Gaps = 13/163 (7%)
Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
EE V Y+ L+ KE+ E+A ++ M + GI P L +G +
Sbjct: 496 EEGCDQTVYTYTILLSGMFKEHRNEEALKLWDMMIDKGITPTAACFRALSTGLCLSGKVA 555
Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
RA + + L G D MI AG+ K L D + G E I ++
Sbjct: 556 RACKILDELAPMGVILDAAC-EDMINTLCKAGRIKEACKLADGITERGREVPGRIRTVMI 614
Query: 370 RSFAQCGDVR------------GAGQITNIMRIEEFQPTLESC 400
+ + G G ++ ++ R +F LE+C
Sbjct: 615 NALRKVGKADLAMKLMHSKIGIGYERMGSVKRRVKFTTLLETC 657
>sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400,
chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2
SV=1
Length = 918
Score = 99.0 bits (245), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/267 (25%), Positives = 128/267 (47%), Gaps = 10/267 (3%)
Query: 218 LQPSRIDWINLL-----DRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENC 272
+QP RI + +LL L E L+ ++ + ++ F Y+ L+DA K
Sbjct: 335 VQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFS-----YNTLLDAICKGGQ 389
Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
++ A IL +M I+P++V+ + ++ ++KAG D A F +R G D+ YN+
Sbjct: 390 MDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNT 449
Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
++ Y G+ + + ++ M + GI++ Y ALL + + G ++ M+ E
Sbjct: 450 LLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREH 509
Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
P L + + L++ Y + G +A F G + D +++I A K L+ A+
Sbjct: 510 VLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGLVGSAV 569
Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGR 479
+L+ E+ K+G P TY ++D GR
Sbjct: 570 SLIDEMTKEGISPNVVTYNSIIDAFGR 596
Score = 98.2 bits (243), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 75/320 (23%), Positives = 147/320 (45%), Gaps = 5/320 (1%)
Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG-NLDRA 311
+ V +S LI A+ + E+A + M E G+ P++VT ++ K G +
Sbjct: 264 YGNTVYAFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQV 323
Query: 312 KEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRS 371
+ F+ ++ +G QPD+ +NS++ G + +L D M IE+ Y LL +
Sbjct: 324 AKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDA 383
Query: 372 FAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD 431
+ G + A +I M ++ P + S + +++ + +AG D+A + F M LG D
Sbjct: 384 ICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALD 443
Query: 432 DRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLG 491
++++ Y K ++AL++L E+ G + TY L+ G+ +E +++
Sbjct: 444 RVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFT 503
Query: 492 KISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLA 549
++ P +L D Y++ G+ K+A++ F E K + D + +I+ L
Sbjct: 504 EMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEI--FREFKSAGLRADVVLYSALIDALCK 561
Query: 550 GGFLQDAQRVHGLMEAQGFA 569
G + A + M +G +
Sbjct: 562 NGLVGSAVSLIDEMTKEGIS 581
Score = 79.0 bits (193), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 67/303 (22%), Positives = 127/303 (41%), Gaps = 5/303 (1%)
Query: 248 LSEESFQTNVRDYSKLIDAHAKENC-LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
+ E + N+ Y+ +IDA K + + +M NG+ PD +T L+ + S+ G
Sbjct: 294 MKEYGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGG 353
Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
+ A+ F+ + + + D YN+++ A GQ L ++ M I + Y
Sbjct: 354 LWEAARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYS 413
Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
++ FA+ G A + MR S L+ Y + G ++A M +
Sbjct: 414 TVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASV 473
Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
G K D +++ YGK+ D+ + E++++ P TY+ L+D + L EA
Sbjct: 474 GIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEA 533
Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERII 544
++ + G + +L D + G+ A+ + E KE + P+ + II
Sbjct: 534 MEIFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLID--EMTKEGISPNVVTYNSII 591
Query: 545 NGL 547
+
Sbjct: 592 DAF 594
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 75/157 (47%)
Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
Y+ L+ + K E+A IL++M GI D+VT L+ Y K G D K+ F ++
Sbjct: 447 YNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMK 506
Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
P+ Y+++I Y G K M + ++G+ +Y AL+ + + G V
Sbjct: 507 REHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGLVG 566
Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA 416
A + + M E P + + +++A+G++ D++
Sbjct: 567 SAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMDRS 603
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/306 (20%), Positives = 129/306 (42%), Gaps = 35/306 (11%)
Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
+V Y+ L+ + K+ ++ +++ +M ++P+++T + L+ YSK G A E F
Sbjct: 478 DVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIF 537
Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
+S G + D +Y+++I A G +SL+D M GI + Y +++ +F +
Sbjct: 538 REFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRS 597
Query: 376 GDVRGAGQITNIMRIEEFQPTLESCT-----LLVEAYGQAGDPDQARSN----------- 419
+ + +N + L + T +++ +GQ R+
Sbjct: 598 ATMDRSADYSNGGSLPFSSSALSALTETEGNRVIQLFGQLTTESNNRTTKDCEEGMQELS 657
Query: 420 -----FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474
F M +L KP+ ++++ A + N + A LL EL + + +L+
Sbjct: 658 CILEVFRKMHQLEIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNKVYGVVHGLLM 717
Query: 475 D-----WLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLE 529
WL +A+ L K++E+ + +L DM G ++ A L LE
Sbjct: 718 GQRENVWL-------QAQSLFDKVNEMDGSTASAFYNALTDMLWHFGQKRGA--ELVALE 768
Query: 530 AKKEQM 535
+ Q+
Sbjct: 769 GRSRQV 774
Score = 38.1 bits (87), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/150 (17%), Positives = 66/150 (44%), Gaps = 1/150 (0%)
Query: 403 LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG 462
++ G+ G A+ F+ G+ +++I+AYG+ L ++A+++ +++ G
Sbjct: 239 MISTLGRYGKVTIAKRIFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEYG 298
Query: 463 FEPGPATYTVLVDWLGRLQL-INEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKA 521
P TY ++D G+ + + + ++ G P SL + +R G+ + A
Sbjct: 299 LRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAA 358
Query: 522 LQALGFLEAKKEQMGPDDFERIINGLLAGG 551
+ ++ + + +++ + GG
Sbjct: 359 RNLFDEMTNRRIEQDVFSYNTLLDAICKGG 388
>sp|P0C8A0|PP275_ARATH Pentatricopeptide repeat-containing protein At3g49730
OS=Arabidopsis thaliana GN=At3g49730 PE=2 SV=1
Length = 638
Score = 98.6 bits (244), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 78/312 (25%), Positives = 145/312 (46%), Gaps = 3/312 (0%)
Query: 263 LIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHG 322
L+ A N ++ A +L +M + G+ PD L+ K G++ A + FE +R
Sbjct: 173 LMRRFASANMVKKAVEVLDEMPKYGLEPDEYVFGCLLDALCKNGSVKEASKVFEDMREK- 231
Query: 323 FQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAG 382
F P+ + + S++ + G+ ++ M +G+E ++ LL +A G + A
Sbjct: 232 FPPNLRYFTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAY 291
Query: 383 QITNIMRIEEFQPTLESCTLLVEAYGQAGDP-DQARSNFDYMIRLGHKPDDRCTASMIAA 441
+ N MR F+P + T+L++A + D+A F M R G + D ++I+
Sbjct: 292 DLMNDMRKRGFEPNVNCYTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISG 351
Query: 442 YGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPP 501
+ K ++DK ++L ++ K G P TY ++ + + E +L+ K+ G P
Sbjct: 352 FCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRGCHPD 411
Query: 502 FKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHG 561
I + + + G K+A++ +EA G D F +ING + GFL +A
Sbjct: 412 LLIYNVVIRLACKLGEVKEAVRLWNEMEANGLSPGVDTFVIMINGFTSQGFLIEACNHFK 471
Query: 562 LMEAQG-FAASE 572
M ++G F+A +
Sbjct: 472 EMVSRGIFSAPQ 483
Score = 79.7 bits (195), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 65/267 (24%), Positives = 116/267 (43%), Gaps = 3/267 (1%)
Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
E F N+R ++ L+ +E L +A+ +L +M E G+ PDIV T L+ Y+ AG +
Sbjct: 230 EKFPPNLRYFTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMAD 289
Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNA-GQPKLGMSLVDMMITSGIERSEEIYLALL 369
A + +R GF+P+ Y +I A + M + M G E Y AL+
Sbjct: 290 AYDLMNDMRKRGFEPNVNCYTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALI 349
Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
F + G + + + MR + P+ + ++ A+ + ++ + M R G
Sbjct: 350 SGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRGCH 409
Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
PD +I K + +A+ L E+E +G PG T+ ++++ + EA
Sbjct: 410 PDLLIYNVVIRLACKLGEVKEAVRLWNEMEANGLSPGVDTFVIMINGFTSQGFLIEACNH 469
Query: 490 LGKISELG--EAPPFKIQVSLCDMYAR 514
++ G AP + SL + R
Sbjct: 470 FKEMVSRGIFSAPQYGTLKSLLNNLVR 496
>sp|Q8L844|PP413_ARATH Pentatricopeptide repeat-containing protein At5g42310,
mitochondrial OS=Arabidopsis thaliana GN=At5g42310 PE=2
SV=1
Length = 709
Score = 98.6 bits (244), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 90/382 (23%), Positives = 161/382 (42%), Gaps = 35/382 (9%)
Query: 192 KLITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEE 251
+L+ D I+ K DPS L +LL + Q T L K A LV
Sbjct: 270 QLVNDIIMGFAKSGDPSKAL----QLLGMA-------------QATGLSAKTATLV---- 308
Query: 252 SFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRA 311
+I A A +AE + +++ ++GI P L+ Y K G L A
Sbjct: 309 ----------SIISALADSGRTLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDA 358
Query: 312 KEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRS 371
+ + G PD+ Y+ +I AYVNAG+ + ++ M ++ + ++ LL
Sbjct: 359 ESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAG 418
Query: 372 FAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD 431
F G+ + Q+ M+ +P + ++++ +G+ D A + FD M+ G +PD
Sbjct: 419 FRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPD 478
Query: 432 DRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLG 491
++I + K A + +E+ G P TY ++++ G + ++ ++LLG
Sbjct: 479 RVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATTYNIMINSYGDQERWDDMKRLLG 538
Query: 492 KISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLA 549
K+ G P +L D+Y ++G A++ L E K + P + +IN
Sbjct: 539 KMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLE--EMKSVGLKPSSTMYNALINAYAQ 596
Query: 550 GGFLQDAQRVHGLMEAQGFAAS 571
G + A +M + G S
Sbjct: 597 RGLSEQAVNAFRVMTSDGLKPS 618
Score = 89.4 bits (220), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 119/242 (49%), Gaps = 18/242 (7%)
Query: 216 ELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVR--------DYSKLIDAH 267
E ++P R+ W L+D + K +++EE F+ R Y+ +I+++
Sbjct: 473 EGIEPDRVTWNTLID--------CHCKHGRHIVAEEMFEAMERRGCLPCATTYNIMINSY 524
Query: 268 AKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDK 327
+ +D +R+L KM GI+P++VT T LV +Y K+G + A E E ++S G +P
Sbjct: 525 GDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSS 584
Query: 328 KVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNI 387
+YN++I AY G + ++ +M + G++ S +L+ +F + A +
Sbjct: 585 TMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFGEDRRDAEAFAVLQY 644
Query: 388 MRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAA--YGKK 445
M+ +P + + T L++A + + ++ MI G KPD + + + +A Y K+
Sbjct: 645 MKENGVKPDVVTYTTLMKALIRVDKFQKVPVVYEEMIMSGCKPDRKARSMLRSALRYMKQ 704
Query: 446 NL 447
L
Sbjct: 705 TL 706
Score = 77.0 bits (188), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 69/345 (20%), Positives = 139/345 (40%), Gaps = 37/345 (10%)
Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK--EAFES 317
Y+ LI A A+ N +E A ++ KM ++G D V ++++ +++ +D ++
Sbjct: 200 YNALIGACARNNDIEKALNLIAKMRQDGYQSDFVNYSLVIQSLTRSNKIDSVMLLRLYKE 259
Query: 318 LRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDM------------------------- 352
+ + D ++ N +IM + +G P + L+ M
Sbjct: 260 IERDKLELDVQLVNDIIMGFAKSGDPSKALQLLGMAQATGLSAKTATLVSIISALADSGR 319
Query: 353 ----------MITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTL 402
+ SGI+ Y ALL+ + + G ++ A + + M P + +L
Sbjct: 320 TLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSL 379
Query: 403 LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG 462
L++AY AG + AR M +P+ + ++A + + K +L E++ G
Sbjct: 380 LIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIG 439
Query: 463 FEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKAL 522
+P Y V++D G+ ++ A ++ G P +L D + + G A
Sbjct: 440 VKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAE 499
Query: 523 QALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQG 567
+ +E + + +IN D +R+ G M++QG
Sbjct: 500 EMFEAMERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQG 544
Score = 42.7 bits (99), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 69/147 (46%), Gaps = 6/147 (4%)
Query: 437 SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496
++I A + N ++KALNL+ ++ +DG++ Y++++ L R I+ +L ++ +
Sbjct: 202 ALIGACARNNDIEKALNLIAKMRQDGYQSDFVNYSLVIQSLTRSNKIDSV--MLLRLYKE 259
Query: 497 GEAPPFKIQVSLCD----MYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGF 552
E ++ V L + +A++G KALQ LG +A II+ L G
Sbjct: 260 IERDKLELDVQLVNDIIMGFAKSGDPSKALQLLGMAQATGLSAKTATLVSIISALADSGR 319
Query: 553 LQDAQRVHGLMEAQGFAASERLKVALI 579
+A+ + + G R AL+
Sbjct: 320 TLEAEALFEELRQSGIKPRTRAYNALL 346
>sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330
OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2
Length = 559
Score = 98.6 bits (244), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 113/251 (45%)
Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
E+ N+ ++ LIDA KE +AE++ M + I PDI T L++ + LD
Sbjct: 248 EKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLD 307
Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
+AK+ FE + S PD YN++I + + + + G L M G+ Y L+
Sbjct: 308 KAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLI 367
Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
+ GD A ++ M + P + + ++L++ G ++A FDYM + K
Sbjct: 368 QGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIK 427
Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
D +MI K +D +L L G +P TY ++ L +L+ EA L
Sbjct: 428 LDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYAL 487
Query: 490 LGKISELGEAP 500
L K+ E G P
Sbjct: 488 LKKMKEDGPLP 498
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 75/376 (19%), Positives = 150/376 (39%), Gaps = 10/376 (2%)
Query: 219 QPSRIDWINLLDRLREQNTQLYFKVAELV-----LSEESFQTNVRDYSKLIDAHAKENCL 273
+P I + L+ L N K +E V + + Q N+ Y +++ K +
Sbjct: 112 RPDTITFTTLIHGLFLHN-----KASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDI 166
Query: 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333
+ A +L KM I D+V ++ K ++D A F+ + + G +P+ Y+S+
Sbjct: 167 DLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSL 226
Query: 334 IMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF 393
I + G+ L+ MI I + + AL+ +F + G A ++ + M
Sbjct: 227 ISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSI 286
Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALN 453
P + + L+ + D+A+ F++M+ PD ++I + K ++
Sbjct: 287 DPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTE 346
Query: 454 LLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYA 513
L E+ G TYT L+ L + A+++ ++ G P L D
Sbjct: 347 LFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLC 406
Query: 514 RAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASER 573
G +KAL+ +++ + ++ + +I G+ G + D + + +G +
Sbjct: 407 NNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVV 466
Query: 574 LKVALISSQTFNRQRQ 589
+IS R Q
Sbjct: 467 TYNTMISGLCSKRLLQ 482
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 70/315 (22%), Positives = 132/315 (41%), Gaps = 8/315 (2%)
Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
++ +++KL+ A AK + + +KM GI ++ T +L++ + + + A
Sbjct: 9 SIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALL 68
Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
+ G++P +S++ Y + + ++LVD M+ G + L+
Sbjct: 69 GKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLH 128
Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
A + + M QP L + ++V + GD D A + + M + D
Sbjct: 129 NKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIF 188
Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
++I + K +D ALNL E+E G P TY+ L+ L ++A QLL + E
Sbjct: 189 NTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIE 248
Query: 496 LGEAPPFKIQVSLCDMYARAG--IEKKALQALGFLEAKKEQMGPDDF--ERIINGLLAGG 551
P +L D + + G +E + L + K + PD F +ING
Sbjct: 249 KKINPNLVTFNALIDAFVKEGKFVEAEKLHD----DMIKRSIDPDIFTYNSLINGFCMHD 304
Query: 552 FLQDAQRVHGLMEAQ 566
L A+++ M ++
Sbjct: 305 RLDKAKQMFEFMVSK 319
Score = 68.9 bits (167), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/320 (21%), Positives = 135/320 (42%), Gaps = 6/320 (1%)
Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
+ E ++ + ++ LI N +A ++ +M + G P++VT V+V+ K G+
Sbjct: 106 MVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGD 165
Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
+D A + + + D ++N++I + ++L M T GI + Y +
Sbjct: 166 IDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSS 225
Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
L+ G A Q+ + M ++ P L + L++A+ + G +A D MI+
Sbjct: 226 LISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRS 285
Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLL-LELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
PD S+I + + LDKA + + KD F P TY L+ + + + +
Sbjct: 286 IDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCF-PDLDTYNTLIKGFCKSKRVEDG 344
Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERII 544
+L ++S G +L G A + F + + + PD + ++
Sbjct: 345 TELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKV--FKQMVSDGVPPDIMTYSILL 402
Query: 545 NGLLAGGFLQDAQRVHGLME 564
+GL G L+ A V M+
Sbjct: 403 DGLCNNGKLEKALEVFDYMQ 422
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 75/374 (20%), Positives = 148/374 (39%), Gaps = 13/374 (3%)
Query: 207 PSPLLAEWKELLQP-SRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLID 265
P P + E+ +LL +++ +L+ L E+ +L N+ Y+ LI+
Sbjct: 6 PLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRL------------GISHNLYTYNILIN 53
Query: 266 AHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQP 325
+ + + A +L KM + G P IVT + L++ Y + A + + G++P
Sbjct: 54 CFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRP 113
Query: 326 DKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQIT 385
D + ++I + ++LVD M+ G + + Y ++ + GD+ A +
Sbjct: 114 DTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLL 173
Query: 386 NIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKK 445
N M + + + ++++ + D A + F M G +P+ +S+I+
Sbjct: 174 NKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSY 233
Query: 446 NLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQ 505
A LL ++ + P T+ L+D + EAE+L + + P
Sbjct: 234 GRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTY 293
Query: 506 VSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEA 565
SL + + KA Q F+ +K D + +I G ++D + M
Sbjct: 294 NSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSH 353
Query: 566 QGFAASERLKVALI 579
+G LI
Sbjct: 354 RGLVGDTVTYTTLI 367
Score = 46.2 bits (108), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 59/138 (42%)
Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
++ YS L+D LE A + M ++ I DI T ++ KAG +D + F
Sbjct: 394 DIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLF 453
Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
SL G +P+ YN+MI + + +L+ M G Y L+R+ +
Sbjct: 454 CSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRD 513
Query: 376 GDVRGAGQITNIMRIEEF 393
GD + ++ MR F
Sbjct: 514 GDKAASAELIREMRSCRF 531
Score = 39.7 bits (91), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%)
Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
LS + + NV Y+ +I + L++A +LKKM E+G +PD T L+ + + G+
Sbjct: 456 LSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGD 515
Query: 308 LDRAKEAFESLRSHGFQPD 326
+ E +RS F D
Sbjct: 516 KAASAELIREMRSCRFVGD 534
>sp|Q9T0D6|PP306_ARATH Pentatricopeptide repeat-containing protein At4g11690
OS=Arabidopsis thaliana GN=At4g11690 PE=2 SV=1
Length = 566
Score = 98.2 bits (243), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/257 (25%), Positives = 121/257 (47%)
Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
+ E N+ Y+ LI +E L +A +++ +M +GI P+++T L+ + G
Sbjct: 294 MRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGK 353
Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
L +A L+S G P YN ++ + G +V M GI+ S+ Y
Sbjct: 354 LGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTI 413
Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
L+ +FA+ ++ A Q+ M P + + ++L+ + G ++A F M+
Sbjct: 414 LIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKN 473
Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
+P++ +MI Y K+ +AL LL E+E+ P A+Y +++ L + + EAE
Sbjct: 474 CEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMIEVLCKERKSKEAE 533
Query: 488 QLLGKISELGEAPPFKI 504
+L+ K+ + G P I
Sbjct: 534 RLVEKMIDSGIDPSTSI 550
Score = 94.0 bits (232), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 84/344 (24%), Positives = 149/344 (43%), Gaps = 16/344 (4%)
Query: 201 LEKEEDPSPLLAEWKEL-LQPSRIDWINLLDRLR-----EQNTQLYFKVAELVLSEESFQ 254
+EK D LL E E P+ + + L+D E+ L+F++ +L L
Sbjct: 179 IEKSFD---LLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLV----- 230
Query: 255 TNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEA 314
N R Y+ LI+ K + + +KM E+G+ P++ T +++ K G A +
Sbjct: 231 ANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQV 290
Query: 315 FESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ 374
F+ +R G + YN++I + +VD M + GI + Y L+ F
Sbjct: 291 FDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCG 350
Query: 375 CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
G + A + ++ P+L + +LV + + GD A M G KP
Sbjct: 351 VGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVT 410
Query: 435 TASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
+I + + + ++KA+ L L +E+ G P TY+VL+ +NEA +L +
Sbjct: 411 YTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMV 470
Query: 495 ELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD 538
E P I ++ Y + G +AL+ L +E K ++ P+
Sbjct: 471 EKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEK--ELAPN 512
Score = 80.1 bits (196), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 72/312 (23%), Positives = 134/312 (42%), Gaps = 8/312 (2%)
Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
+V + LI + +E + +L ++ E G P++V T L+ K G +++AK+ F
Sbjct: 162 DVYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLF 221
Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
+ G +++ Y +I G K G + + M G+ + Y ++ +
Sbjct: 222 FEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKD 281
Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
G + A Q+ + MR + + L+ + ++A D M G P+
Sbjct: 282 GRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITY 341
Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
++I + L KAL+L +L+ G P TY +LV R + A +++ ++ E
Sbjct: 342 NTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEE 401
Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG--PD--DFERIINGLLAGG 551
G P L D +AR+ +KA+Q L E++G PD + +I+G G
Sbjct: 402 RGIKPSKVTYTILIDTFARSDNMEKAIQ----LRLSMEELGLVPDVHTYSVLIHGFCIKG 457
Query: 552 FLQDAQRVHGLM 563
+ +A R+ M
Sbjct: 458 QMNEASRLFKSM 469
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/306 (20%), Positives = 123/306 (40%), Gaps = 34/306 (11%)
Query: 271 NCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVY 330
N A+ +L ++ I TS+ L+H +++ + +K F ++Y
Sbjct: 53 NLFSHAQSLLLQVISGKIHSQFFTSSSLLHYLTES---ETSKTKF------------RLY 97
Query: 331 NSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL------RSFAQCGDVRGAGQI 384
+I +YV + L +S + M+ +G + LL SF Q +
Sbjct: 98 EVIINSYVQSQSLNLSISYFNEMVDNGFVPGSNCFNYLLTFVVGSSSFNQWWSFFNENKS 157
Query: 385 TNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL---GHKPDDRCTASMIAA 441
++ + F ++ C +AG+ +++ FD +I L G P+ ++I
Sbjct: 158 KVVLDVYSFGILIKGCC-------EAGEIEKS---FDLLIELTEFGFSPNVVIYTTLIDG 207
Query: 442 YGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPP 501
KK ++KA +L E+ K G TYTVL++ L + + + ++ K+ E G P
Sbjct: 208 CCKKGEIEKAKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPN 267
Query: 502 FKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHG 561
+ + + G K A Q + + + +I GL L +A +V
Sbjct: 268 LYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVD 327
Query: 562 LMEAQG 567
M++ G
Sbjct: 328 QMKSDG 333
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/337 (19%), Positives = 126/337 (37%), Gaps = 3/337 (0%)
Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
E+ +T R Y +I+++ + L + +M +NG VP L+ + + ++
Sbjct: 88 ETSKTKFRLYEVIINSYVQSQSLNLSISYFNEMVDNGFVPGSNCFNYLLTFVVGSSSFNQ 147
Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
F +S D + +I AG+ + L+ + G + IY L+
Sbjct: 148 WWSFFNENKSK-VVLDVYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLID 206
Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
+ G++ A + M + T+L+ + G Q ++ M G P
Sbjct: 207 GCCKKGEIEKAKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFP 266
Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
+ ++ K A + E+ + G TY L+ L R +NEA +++
Sbjct: 267 NLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVV 326
Query: 491 GKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAG 550
++ G P +L D + G KAL L+++ + +++G
Sbjct: 327 DQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRK 386
Query: 551 GFLQDAQRVHGLMEAQGFAASERLKVALISSQTFNRQ 587
G A ++ ME +G S+ LI TF R
Sbjct: 387 GDTSGAAKMVKEMEERGIKPSKVTYTILI--DTFARS 421
>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710
OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1
Length = 747
Score = 97.8 bits (242), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 85/372 (22%), Positives = 155/372 (41%), Gaps = 50/372 (13%)
Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
Y+ LI + KE A + +M +G+ P ++T T L+H KAGN++RA E + +R
Sbjct: 313 YNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMR 372
Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
G P+++ Y +++ + G ++ M +G S Y AL+ G +
Sbjct: 373 VRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKME 432
Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA----------------------- 416
A + M+ + P + S + ++ + ++ D D+A
Sbjct: 433 DAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLI 492
Query: 417 -------RSN-----FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE 464
R+ ++ M+R+G PD+ ++I AY + L+KAL L E+ + G
Sbjct: 493 QGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVL 552
Query: 465 PGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPP---------------FKIQVSLC 509
P TY+VL++ L + EA++LL K+ P FK VSL
Sbjct: 553 PDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLI 612
Query: 510 DMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFA 569
+ G+ +A Q + K + + +I+G G ++ A ++ M GF
Sbjct: 613 KGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFL 672
Query: 570 ASERLKVALISS 581
+AL+ +
Sbjct: 673 LHTVTVIALVKA 684
Score = 97.1 bits (240), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 85/342 (24%), Positives = 155/342 (45%), Gaps = 11/342 (3%)
Query: 253 FQTNVRDYSKLIDA--HAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
F V Y+ ++DA +K N + AE + K+M E+ + P++ T +L+ + AGN+D
Sbjct: 165 FMPGVLSYNAVLDATIRSKRN-ISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDV 223
Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
A F+ + + G P+ YN++I Y + G L+ M G+E + Y ++
Sbjct: 224 ALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVIN 283
Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
+ G ++ + M + + L++ Y + G+ QA M+R G P
Sbjct: 284 GLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTP 343
Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
S+I + K +++A+ L ++ G P TYT LVD + +NEA ++L
Sbjct: 344 SVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVL 403
Query: 491 GKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQ-MGPD--DFERIINGL 547
++++ G +P +L + + G K A+ LE KE+ + PD + +++G
Sbjct: 404 REMNDNGFSPSVVTYNALINGHCVTG---KMEDAIAVLEDMKEKGLSPDVVSYSTVLSGF 460
Query: 548 LAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFNRQRQ 589
+ +A RV M +G +LI Q F QR+
Sbjct: 461 CRSYDVDEALRVKREMVEKGIKPDTITYSSLI--QGFCEQRR 500
Score = 95.9 bits (237), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 76/306 (24%), Positives = 138/306 (45%), Gaps = 4/306 (1%)
Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
N+ Y+ +I+ +E +++ +L +MN G D VT L+ Y K GN +A
Sbjct: 274 NLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMH 333
Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
+ HG P Y S+I + AG M +D M G+ +E Y L+ F+Q
Sbjct: 334 AEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQK 393
Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
G + A ++ M F P++ + L+ + G + A + + M G PD
Sbjct: 394 GYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSY 453
Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
+++++ + + +D+AL + E+ + G +P TY+ L+ + EA L ++
Sbjct: 454 STVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLR 513
Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFL 553
+G P +L + Y G +KALQ E ++ + PD + +INGL
Sbjct: 514 VGLPPDEFTYTALINAYCMEGDLEKALQLHN--EMVEKGVLPDVVTYSVLINGLNKQSRT 571
Query: 554 QDAQRV 559
++A+R+
Sbjct: 572 REAKRL 577
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/279 (23%), Positives = 120/279 (43%), Gaps = 18/279 (6%)
Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
+ E+ +V YS ++ + +++A R+ ++M E GI PD +T + L+ + +
Sbjct: 441 MKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRR 500
Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
A + +E + G PD+ Y ++I AY G + + L + M+ G+ Y
Sbjct: 501 TKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSV 560
Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPT-------LESCT--------LLVEAYGQAGD 412
L+ + R A ++ + EE P+ +E+C+ L++ + G
Sbjct: 561 LINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGM 620
Query: 413 PDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTV 472
+A F+ M+ HKPD MI + + + KA L E+ K GF T
Sbjct: 621 MTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIA 680
Query: 473 LVDWLGRLQLINEAEQLLGKI---SELGEAPPFKIQVSL 508
LV L + +NE ++ + EL EA K+ V +
Sbjct: 681 LVKALHKEGKVNELNSVIVHVLRSCELSEAEQAKVLVEI 719
Score = 66.6 bits (161), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 70/339 (20%), Positives = 131/339 (38%), Gaps = 48/339 (14%)
Query: 274 EDAERILKKMNENGIVPDIVTST-----VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKK 328
E A + K + E D+ ST ++V YS+ +D+A ++HGF P
Sbjct: 114 EYASLVFKSLQET---YDLCYSTSSVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVL 170
Query: 329 VYNS------------------------------------MIMAYVNAGQPKLGMSLVDM 352
YN+ +I + AG + ++L D
Sbjct: 171 SYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDK 230
Query: 353 MITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGD 412
M T G + Y L+ + + + ++ M ++ +P L S +++ + G
Sbjct: 231 METKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGR 290
Query: 413 PDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTV 472
+ M R G+ D+ ++I Y K+ +AL + E+ + G P TYT
Sbjct: 291 MKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTS 350
Query: 473 LVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKK 532
L+ + + +N A + L ++ G P + +L D +++ G +A + L E
Sbjct: 351 LIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLR--EMND 408
Query: 533 EQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFA 569
P + +ING G ++DA V M+ +G +
Sbjct: 409 NGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLS 447
>sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775,
mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2
SV=1
Length = 644
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 85/333 (25%), Positives = 138/333 (41%)
Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
+ E FQ N Y +++ K A +L+KM E I D V ++++ K G+
Sbjct: 219 MVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGS 278
Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
LD A F + GF+ D YN++I + NAG+ G L+ MI I + +
Sbjct: 279 LDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSV 338
Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
L+ SF + G +R A Q+ M P + L++ + + ++A D MI G
Sbjct: 339 LIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKG 398
Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
PD +I Y K N +D L L E+ G TY LV + + A+
Sbjct: 399 CDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAK 458
Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
+L ++ P L D G +KAL+ G +E K ++ + II+G+
Sbjct: 459 KLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGM 518
Query: 548 LAGGFLQDAQRVHGLMEAQGFAASERLKVALIS 580
+ DA + + +G R +IS
Sbjct: 519 CNASKVDDAWDLFCSLPLKGVKLDARAYNIMIS 551
Score = 79.0 bits (193), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 99/219 (45%)
Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
N Y+ LID KEN LE+A +++ M G PDI+T +L++ Y KA +D E F
Sbjct: 367 NTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELF 426
Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
+ G + YN+++ + +G+ ++ L M++ + Y LL
Sbjct: 427 REMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDN 486
Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
G++ A +I + + + + +++ A D A F + G K D R
Sbjct: 487 GELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAY 546
Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474
MI+ +K+ L KA L ++ ++G P TY +L+
Sbjct: 547 NIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILI 585
Score = 75.9 bits (185), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 81/373 (21%), Positives = 152/373 (40%), Gaps = 53/373 (14%)
Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
V D+++L A AK E + K+M GI I T +++++ + + L A
Sbjct: 87 TVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMINCFCRCRKLSYAFSTM 146
Query: 316 ESLRSHGFQPDKKVYNSMI---------------------MAY----------VNA---- 340
+ G++PD ++N+++ M + VN
Sbjct: 147 GKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLN 206
Query: 341 GQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESC 400
G+ + L+D M+ +G + +E Y +L + G A ++ + ++EE L++
Sbjct: 207 GKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMEL--LRKMEERNIKLDAV 264
Query: 401 --TLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLEL 458
+++++ + G D A + F+ M G K D ++I + D LL ++
Sbjct: 265 KYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDM 324
Query: 459 EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIE 518
K P T++VL+D + + EA+QLL ++ + G AP SL D + +
Sbjct: 325 IKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRL 384
Query: 519 KKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQD--------------AQRVHGLME 564
++A+Q + + +K F +ING + D A V
Sbjct: 385 EEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTL 444
Query: 565 AQGFAASERLKVA 577
QGF S +L+VA
Sbjct: 445 VQGFCQSGKLEVA 457
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/301 (21%), Positives = 125/301 (41%)
Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
++ L++ E + +A ++ +M E G P ++T LV+ G + A + +
Sbjct: 161 FNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMV 220
Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
GFQP++ Y ++ +GQ L M L+ M I+ Y ++ + G +
Sbjct: 221 ETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLD 280
Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
A + N M I+ F+ + + L+ + AG D MI+ P+ + +I
Sbjct: 281 NAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLI 340
Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
++ K+ L +A LL E+ + G P TY L+D + + EA Q++ + G
Sbjct: 341 DSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCD 400
Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV 559
P L + Y +A L+ + + + ++ G G L+ A+++
Sbjct: 401 PDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKL 460
Query: 560 H 560
Sbjct: 461 F 461
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/268 (19%), Positives = 125/268 (46%), Gaps = 6/268 (2%)
Query: 215 KELLQ----PSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAK 269
KE++Q P+ I + +L+D +E + ++ +L++S+ ++ ++ LI+ + K
Sbjct: 357 KEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGC-DPDIMTFNILINGYCK 415
Query: 270 ENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKV 329
N ++D + ++M+ G++ + VT LV + ++G L+ AK+ F+ + S +PD
Sbjct: 416 ANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVS 475
Query: 330 YNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMR 389
Y ++ + G+ + + + + S +E IY+ ++ V A + +
Sbjct: 476 YKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLP 535
Query: 390 IEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLD 449
++ + + +++ + +A F M GH PD+ +I A+ +
Sbjct: 536 LKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRAHLGDDDAT 595
Query: 450 KALNLLLELEKDGFEPGPATYTVLVDWL 477
A L+ E++ GF +T ++++ L
Sbjct: 596 TAAELIEEMKSSGFPADVSTVKMVINML 623
Score = 43.1 bits (100), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 52/101 (51%), Gaps = 3/101 (2%)
Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
+ R Y+ +I +++ L A+ + +KM E G PD +T +L+ + + A E
Sbjct: 542 DARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRAHLGDDDATTAAELI 601
Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
E ++S GF D M++ +++G+ L S +DM+ T+
Sbjct: 602 EEMKSSGFPADVSTV-KMVINMLSSGE--LDKSFLDMLSTT 639
>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700,
chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1
Length = 754
Score = 97.1 bits (240), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 76/301 (25%), Positives = 132/301 (43%), Gaps = 9/301 (2%)
Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
N Y+ LI KEN +E+A + + + GI+PD+ T L+ N A E F
Sbjct: 364 NTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELF 423
Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
E +RS G +PD+ YN +I + + G+ ++++ M SG RS Y L+ F +
Sbjct: 424 EEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKA 483
Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
R A +I + M + + L++ ++ + A D MI G KPD
Sbjct: 484 NKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTY 543
Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
S++ + + + KA +++ + +G EP TY L+ L + + A +LL I
Sbjct: 544 NSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQM 603
Query: 496 LG-EAPPFKIQVSLCDMYARAGIEKKALQALG-FLEAKKEQMGPDD---FERIINGLLAG 550
G P + ++ + +K +A+ F E ++ P D + + GL G
Sbjct: 604 KGINLTPHAYNPVIQGLFRK----RKTTEAINLFREMLEQNEAPPDAVSYRIVFRGLCNG 659
Query: 551 G 551
G
Sbjct: 660 G 660
Score = 90.1 bits (222), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 78/338 (23%), Positives = 146/338 (43%), Gaps = 13/338 (3%)
Query: 231 RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKM-NENGIV 289
R+REQ + E S + NV ++ KE +EDA +++M N++G
Sbjct: 245 RIREQ-------MVEFGCSWSNVSVNV-----IVHGFCKEGRVEDALNFIQEMSNQDGFF 292
Query: 290 PDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSL 349
PD T LV+ KAG++ A E + + G+ PD YNS+I G+ K + +
Sbjct: 293 PDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEV 352
Query: 350 VDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQ 409
+D MIT + Y L+ + + V A ++ ++ + P + + L++
Sbjct: 353 LDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCL 412
Query: 410 AGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPAT 469
+ A F+ M G +PD+ +I + K LD+ALN+L ++E G T
Sbjct: 413 TRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVIT 472
Query: 470 YTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLE 529
Y L+D + EAE++ ++ G + +L D ++ + A Q + +
Sbjct: 473 YNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMI 532
Query: 530 AKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQG 567
+ ++ + ++ GG ++ A + M + G
Sbjct: 533 MEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNG 570
Score = 83.6 bits (205), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 79/334 (23%), Positives = 141/334 (42%), Gaps = 5/334 (1%)
Query: 241 FKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVH 300
V + ++ E + + Y+++++ N L+ E KM+ GI PD+ T VL+
Sbjct: 138 LSVVDWMIDEFGLKPDTHFYNRMLNLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNVLIK 197
Query: 301 MYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIER 360
+A L A E + S+G PD+K + +++ Y+ G + + + M+ G
Sbjct: 198 ALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSW 257
Query: 361 SEEIYLALLRSFAQCGDVRGAGQITNIMRIEE-FQPTLESCTLLVEAYGQAGDPDQARSN 419
S ++ F + G V A M ++ F P + LV +AG A
Sbjct: 258 SNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEI 317
Query: 420 FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479
D M++ G+ PD S+I+ K + +A+ +L ++ P TY L+ L +
Sbjct: 318 MDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCK 377
Query: 480 LQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD 539
+ EA +L ++ G P SL + A++ F E + + PD+
Sbjct: 378 ENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMEL--FEEMRSKGCEPDE 435
Query: 540 F--ERIINGLLAGGFLQDAQRVHGLMEAQGFAAS 571
F +I+ L + G L +A + ME G A S
Sbjct: 436 FTYNMLIDSLCSKGKLDEALNMLKQMELSGCARS 469
Score = 76.6 bits (187), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 78/386 (20%), Positives = 156/386 (40%), Gaps = 36/386 (9%)
Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAE 277
L+P + +L+ L + N+ +++ +S + +V ++ LI A + + L A
Sbjct: 150 LKPDTHFYNRMLNLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAI 209
Query: 278 RILKKMNENGIVPDIVTST-----------------------------------VLVHMY 302
+L+ M G+VPD T T V+VH +
Sbjct: 210 LMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGF 269
Query: 303 SKAGNLDRAKEAFESLRSH-GFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERS 361
K G ++ A + + + GF PD+ +N+++ AG K + ++D+M+ G +
Sbjct: 270 CKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPD 329
Query: 362 EEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFD 421
Y +++ + G+V+ A ++ + M + P + L+ + ++A
Sbjct: 330 VYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELAR 389
Query: 422 YMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQ 481
+ G PD S+I A+ L E+ G EP TY +L+D L
Sbjct: 390 VLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKG 449
Query: 482 LINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFE 541
++EA +L ++ G A +L D + +A ++A + +E +
Sbjct: 450 KLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYN 509
Query: 542 RIINGLLAGGFLQDAQRVHGLMEAQG 567
+I+GL ++DA ++ M +G
Sbjct: 510 TLIDGLCKSRRVEDAAQLMDQMIMEG 535
Score = 75.9 bits (185), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 67/302 (22%), Positives = 125/302 (41%)
Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
V+ +E + +V Y+ +I K +++A +L +M P+ VT L+ K
Sbjct: 320 VMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKEN 379
Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
++ A E L S G PD +NS+I ++ M L + M + G E E Y
Sbjct: 380 QVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYN 439
Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
L+ S G + A + M + ++ + L++ + +A +A FD M
Sbjct: 440 MLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVH 499
Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
G + ++I K ++ A L+ ++ +G +P TY L+ R I +A
Sbjct: 500 GVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKA 559
Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIING 546
++ ++ G P +L +AG + A + L ++ K + P + +I G
Sbjct: 560 ADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQG 619
Query: 547 LL 548
L
Sbjct: 620 LF 621
Score = 40.0 bits (92), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 94/250 (37%), Gaps = 53/250 (21%)
Query: 362 EEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFD 421
EEI L L RS G +I M+ + + +L+E+Y Q D+ S D
Sbjct: 87 EEILLRLGRS----GSFDDMKKILEDMKSSRCEMGTSTFLILIESYAQFELQDEILSVVD 142
Query: 422 YMI-RLGHKPDDRCTASMIAAYGKKNLLDKALNL-LLELEKD-----GFEPGPATYTVLV 474
+MI G KPD M+ NLL +L L+E+ G +P +T+ VL+
Sbjct: 143 WMIDEFGLKPDTHFYNRML------NLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNVLI 196
Query: 475 DWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQ----------- 523
L R + A +L + G P K ++ Y G AL+
Sbjct: 197 KALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCS 256
Query: 524 ---------------------ALGFLEAKKEQMG--PDD--FERIINGLLAGGFLQDAQR 558
AL F++ Q G PD F ++NGL G ++ A
Sbjct: 257 WSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIE 316
Query: 559 VHGLMEAQGF 568
+ +M +G+
Sbjct: 317 IMDVMLQEGY 326
>sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850,
chloroplastic OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1
Length = 1112
Score = 97.1 bits (240), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 66/278 (23%), Positives = 128/278 (46%), Gaps = 3/278 (1%)
Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
Y L+D + L+ ++ +M ++G VPD+VT T+LV KAGN A + + +R
Sbjct: 331 YITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMR 390
Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
G P+ YN++I + + + L M + G++ + Y+ + + + GD
Sbjct: 391 DQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSV 450
Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
A + M+ + P + +C + + +AG +A+ F + +G PD M+
Sbjct: 451 SALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMM 510
Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
Y K +D+A+ LL E+ ++G EP L++ L + ++EA ++ ++ E+
Sbjct: 511 KCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLK 570
Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGP 537
P V+ + A G K +A+ E ++ P
Sbjct: 571 PTV---VTYNTLLAGLGKNGKIQEAIELFEGMVQKGCP 605
Score = 91.3 bits (225), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 73/320 (22%), Positives = 144/320 (45%), Gaps = 6/320 (1%)
Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
Q + Y+ LI + + +E A+ + ++ G +PD+ T L+ Y K+G +D E
Sbjct: 782 QPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFE 841
Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLV-DMMITSGIERSEEIYLALLRSF 372
++ + +H + + +N +I V AG + L D+M + Y L+
Sbjct: 842 LYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGL 901
Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
++ G + A Q+ M +P +L+ +G+AG+ D A + F M++ G +PD
Sbjct: 902 SKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDL 961
Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
+ + ++ +D+ L+ EL++ G P Y ++++ LG+ + EA L +
Sbjct: 962 KTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNE 1021
Query: 493 I-SELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLA 549
+ + G P SL AG+ ++A + + E ++ + P+ F +I G
Sbjct: 1022 MKTSRGITPDLYTYNSLILNLGIAGMVEEAGKI--YNEIQRAGLEPNVFTFNALIRGYSL 1079
Query: 550 GGFLQDAQRVHGLMEAQGFA 569
G + A V+ M GF+
Sbjct: 1080 SGKPEHAYAVYQTMVTGGFS 1099
Score = 90.5 bits (223), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 91/343 (26%), Positives = 151/343 (44%), Gaps = 10/343 (2%)
Query: 219 QPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAER 278
+P R+ +I LLDR + K + ++ +V ++ L+DA K +A
Sbjct: 325 KPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFD 384
Query: 279 ILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYV 338
L M + GI+P++ T L+ + LD A E F ++ S G +P Y I Y
Sbjct: 385 TLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYG 444
Query: 339 NAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLE 398
+G + + M T GI + A L S A+ G R A QI ++ P
Sbjct: 445 KSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSV 504
Query: 399 SCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLEL 458
+ ++++ Y + G+ D+A M+ G +PD S+I K + +D+A + + +
Sbjct: 505 TYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRM 564
Query: 459 EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQV-SLCDMYARAGI 517
++ +P TY L+ LG+ I EA +L + + G PP I +L D +
Sbjct: 565 KEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKG-CPPNTITFNTLFDCLCKNDE 623
Query: 518 EKKALQALGFLEAKKEQMG--PDDF--ERIINGLLAGGFLQDA 556
AL+ L K MG PD F II GL+ G +++A
Sbjct: 624 VTLALKML----FKMMDMGCVPDVFTYNTIIFGLVKNGQVKEA 662
Score = 89.0 bits (219), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 75/290 (25%), Positives = 130/290 (44%), Gaps = 6/290 (2%)
Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
E F+ +++ YS L+ K ++ +LK+M G+ P++ T T+ + + +AG ++
Sbjct: 217 EGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINE 276
Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
A E + + G PD Y +I A A + + + M T + Y+ LL
Sbjct: 277 AYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLD 336
Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
F+ D+ Q + M + P + + T+LV+A +AG+ +A D M G P
Sbjct: 337 RFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILP 396
Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
+ ++I + + LD AL L +E G +P TY V +D+ G+ A +
Sbjct: 397 NLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETF 456
Query: 491 GKISELGEAPPFKIQVSLCDMY--ARAGIEKKALQALGFLEAKKEQMGPD 538
K+ G AP I +Y A+AG +++A Q F K + PD
Sbjct: 457 EKMKTKGIAP--NIVACNASLYSLAKAGRDREAKQI--FYGLKDIGLVPD 502
Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/301 (23%), Positives = 123/301 (40%), Gaps = 37/301 (12%)
Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
L+ A L+KM E G V + + L+H+ K+ A E + + GF+P + Y+S
Sbjct: 169 LKQAPYALRKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSS 228
Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
+++ M L+ M T G++ + + +R + G + A +I M E
Sbjct: 229 LMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEG 288
Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
P + + T+L++A A D A+ F+ M HKPD +++ + LD
Sbjct: 289 CGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVK 348
Query: 453 NLLLELEKDGFEPGPATYTVLVDWLG---------------------------------- 478
E+EKDG P T+T+LVD L
Sbjct: 349 QFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGL 408
Query: 479 -RLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGP 537
R+ +++A +L G + LG P + D Y ++G AL+ F + K + + P
Sbjct: 409 LRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALET--FEKMKTKGIAP 466
Query: 538 D 538
+
Sbjct: 467 N 467
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 76/314 (24%), Positives = 139/314 (44%), Gaps = 10/314 (3%)
Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
+ +E +V Y+ LIDA L+ A+ + +KM PD VT L+ +S +
Sbjct: 284 MDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRD 343
Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
LD K+ + + G PD + ++ A AG +D+M GI + Y
Sbjct: 344 LDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNT 403
Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
L+ + + A ++ M +PT + + ++ YG++GD A F+ M G
Sbjct: 404 LICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKG 463
Query: 428 HKPD-DRCTASM--IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLIN 484
P+ C AS+ +A G+ +A + L+ G P TY +++ ++ I+
Sbjct: 464 IAPNIVACNASLYSLAKAGRDR---EAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEID 520
Query: 485 EAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFER 542
EA +LL ++ E G P + SL + +A +A + F+ K+ ++ P +
Sbjct: 521 EAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKM--FMRMKEMKLKPTVVTYNT 578
Query: 543 IINGLLAGGFLQDA 556
++ GL G +Q+A
Sbjct: 579 LLAGLGKNGKIQEA 592
Score = 76.3 bits (186), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 113/242 (46%), Gaps = 6/242 (2%)
Query: 263 LIDAHAKENCLEDAERILKKMNEN-GIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSH 321
+I K N + A + +K ++ G+ P + T +L+ +A ++ A++ F ++S
Sbjct: 755 IIRYSCKHNNVSGARTLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKST 814
Query: 322 GFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGA 381
G PD YN ++ AY +G+ L M T E + + ++ + G+V A
Sbjct: 815 GCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDA 874
Query: 382 GQI-TNIMRIEEFQPTLESCTL--LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
+ ++M +F PT +CT L++ ++G +A+ F+ M+ G +P+ +
Sbjct: 875 LDLYYDLMSDRDFSPT--ACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNIL 932
Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498
I +GK D A L + K+G P TY+VLVD L + ++E ++ E G
Sbjct: 933 INGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGL 992
Query: 499 AP 500
P
Sbjct: 993 NP 994
Score = 65.9 bits (159), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 73/326 (22%), Positives = 126/326 (38%), Gaps = 12/326 (3%)
Query: 266 AHAKENC--LEDAERILKKMNENGIVPDIV--------TSTVLVHMYSKA--GNLDRAKE 313
H E C + +A R+ K+ E V D++ T+T L S + G L +A
Sbjct: 115 VHTTETCNYMLEALRVDGKLEEMAYVFDLMQKRIIKRDTNTYLTIFKSLSVKGGLKQAPY 174
Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
A +R GF + YN +I + + M + MI G S + Y +L+
Sbjct: 175 ALRKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLG 234
Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
+ D+ + M +P + + T+ + G+AG ++A M G PD
Sbjct: 235 KRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVV 294
Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
+I A LD A + +++ +P TY L+D + ++ +Q ++
Sbjct: 295 TYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEM 354
Query: 494 SELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFL 553
+ G P L D +AG +A L + + + +I GLL L
Sbjct: 355 EKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRL 414
Query: 554 QDAQRVHGLMEAQGFAASERLKVALI 579
DA + G ME+ G + + I
Sbjct: 415 DDALELFGNMESLGVKPTAYTYIVFI 440
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/225 (22%), Positives = 95/225 (42%), Gaps = 1/225 (0%)
Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
++S+ F Y LID +K L +A+++ + M + G P+ +L++ + KAG
Sbjct: 881 LMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAG 940
Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
D A F+ + G +PD K Y+ ++ G+ G+ + SG+ Y
Sbjct: 941 EADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYN 1000
Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEE-FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR 425
++ + + A + N M+ P L + L+ G AG ++A ++ + R
Sbjct: 1001 LIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQR 1060
Query: 426 LGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATY 470
G +P+ ++I Y + A + + GF P TY
Sbjct: 1061 AGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTY 1105
Score = 52.8 bits (125), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 74/362 (20%), Positives = 139/362 (38%), Gaps = 38/362 (10%)
Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
+ E + +V + LI+ K + +++A ++ +M E + P +VT L+ K G
Sbjct: 529 MMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGK 588
Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
+ A E FE + G P+ +N++ + L + ++ M+ G Y
Sbjct: 589 IQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNT 648
Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLL---VEA--------------YGQA 410
++ + G V+ A + M+ + + CTLL V+A Y A
Sbjct: 649 IIFGLVKNGQVKEAMCFFHQMKKLVYPDFVTLCTLLPGVVKASLIEDAYKIITNFLYNCA 708
Query: 411 GDP------------------DQARSNFDYMIRLGHKPD-DRCTASMIAAYGKKNLLDKA 451
P D A S + ++ G D D +I K N + A
Sbjct: 709 DQPANLFWEDLIGSILAEAGIDNAVSFSERLVANGICRDGDSILVPIIRYSCKHNNVSGA 768
Query: 452 LNLLLELEKD-GFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCD 510
L + KD G +P TY +L+ L +I A+ + ++ G P L D
Sbjct: 769 RTLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLD 828
Query: 511 MYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRV-HGLMEAQGFA 569
Y ++G + + + + + +I+GL+ G + DA + + LM + F+
Sbjct: 829 AYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFS 888
Query: 570 AS 571
+
Sbjct: 889 PT 890
>sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930,
chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2
SV=2
Length = 629
Score = 97.1 bits (240), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 70/251 (27%), Positives = 115/251 (45%)
Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
E NV +S LIDA KE L +AE++ +M + I PDI T + L++ + LD
Sbjct: 318 ERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLD 377
Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
AK FE + S P+ YN++I + A + + GM L M G+ + Y L+
Sbjct: 378 EAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLI 437
Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
+ Q GD A +I M + P + + ++L++ + G ++A F+Y+ + +
Sbjct: 438 QGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKME 497
Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
PD MI K ++ +L L G +P YT ++ R L EA+ L
Sbjct: 498 PDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADAL 557
Query: 490 LGKISELGEAP 500
++ E G P
Sbjct: 558 FREMKEDGTLP 568
Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 80/369 (21%), Positives = 157/369 (42%), Gaps = 14/369 (3%)
Query: 219 QPSRIDWINLLDRLREQNTQLYFKVAELV-----LSEESFQTNVRDYSKLIDAHAKENCL 273
QP+ + + L+ L N K +E V + Q ++ Y +++ K +
Sbjct: 182 QPNTVTFNTLIHGLFLHN-----KASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDI 236
Query: 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333
+ A +LKKM + I D+V T ++ N++ A F + + G +P+ YNS+
Sbjct: 237 DLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSL 296
Query: 334 IMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF 393
I N G+ L+ MI I + + AL+ +F + G + A ++ + M
Sbjct: 297 IRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSI 356
Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALN 453
P + + + L+ + D+A+ F+ MI P+ ++I + K +++ +
Sbjct: 357 DPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGME 416
Query: 454 LLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYA 513
L E+ + G TY L+ L + + A+++ K+ G P L D
Sbjct: 417 LFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLC 476
Query: 514 RAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAAS 571
+ G +KAL +L+ K +M PD + +I G+ G ++D + + +G +
Sbjct: 477 KYGKLEKALVVFEYLQ--KSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPN 534
Query: 572 ERLKVALIS 580
+ +IS
Sbjct: 535 VIIYTTMIS 543
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/288 (21%), Positives = 120/288 (41%)
Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
L+DA + +M ++ +P IV L+ +K D E +++ D YN
Sbjct: 61 LDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNI 120
Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
+I + Q L ++++ M+ G E +LL + + A + + M + E
Sbjct: 121 LINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVME 180
Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
+QP + L+ +A + D M+ G +PD +++ K+ +D AL
Sbjct: 181 YQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLAL 240
Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
+LL ++EK E YT ++D L + +N+A L ++ G P SL
Sbjct: 241 SLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCL 300
Query: 513 ARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVH 560
G A + L + +K F +I+ + G L +A++++
Sbjct: 301 CNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLY 348
Score = 68.9 bits (167), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 110/254 (43%), Gaps = 41/254 (16%)
Query: 221 SRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERIL 280
S I+ + DRL E EL++S++ F NV Y+ LI K +E+ +
Sbjct: 365 SLINGFCMHDRLDEAKHMF-----ELMISKDCFP-NVVTYNTLIKGFCKAKRVEEGMELF 418
Query: 281 KKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNA 340
++M++ G+V + VT L+ +AG+ D A++ F+ + S G PD
Sbjct: 419 REMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPD-------------- 464
Query: 341 GQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESC 400
+IT Y LL + G + A + ++ + +P + +
Sbjct: 465 ------------IIT---------YSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTY 503
Query: 401 TLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEK 460
+++E +AG + F + G KP+ +MI+ + +K L ++A L E+++
Sbjct: 504 NIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKE 563
Query: 461 DGFEPGPATYTVLV 474
DG P TY L+
Sbjct: 564 DGTLPNSGTYNTLI 577
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 81/364 (22%), Positives = 144/364 (39%), Gaps = 60/364 (16%)
Query: 207 PSPLLAEWKELLQP-SRIDWINLLDRL--REQNTQLYFKVAELVLSEESFQTNVRDYSKL 263
P P + E+ +LL ++++ +L+ L R QN ++ + ++ Y+ L
Sbjct: 76 PLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISY--------------DLYSYNIL 121
Query: 264 IDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGF 323
I+ + + L A +L KM + G PDIVT + L++ Y + A + + +
Sbjct: 122 INCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEY 181
Query: 324 QPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQ 383
QP+ +N++I + ++L+D M+ G
Sbjct: 182 QPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGC------------------------- 216
Query: 384 ITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYG 443
QP L + +V + GD D A S M + + D ++I A
Sbjct: 217 ----------QPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALC 266
Query: 444 KKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFK 503
++ ALNL E++ G P TY L+ L ++A +LL + E P
Sbjct: 267 NYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVV 326
Query: 504 IQVSLCDMYARAG--IEKKALQALGFLEAKKEQMGPDDF--ERIINGLLAGGFLQDAQRV 559
+L D + + G +E + L + E K + PD F +ING L +A+ +
Sbjct: 327 TFSALIDAFVKEGKLVEAEKL----YDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHM 382
Query: 560 HGLM 563
LM
Sbjct: 383 FELM 386
>sp|Q9C9U0|PP118_ARATH Pentatricopeptide repeat-containing protein At1g73710
OS=Arabidopsis thaliana GN=At1g73710 PE=2 SV=1
Length = 991
Score = 97.1 bits (240), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 85/332 (25%), Positives = 154/332 (46%), Gaps = 16/332 (4%)
Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
++ +I L +AE +LKKM E GI PD T +L+ +++ AG+++ A E + +R
Sbjct: 343 FNTMIHTCGTHGHLSEAESLLKKMEEKGISPDTKTYNILLSLHADAGDIEAALEYYRKIR 402
Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
G PD + +++ +++ M + I E +++ + G V
Sbjct: 403 KVGLFPDTVTHRAVLHILCQRKMVAEVEAVIAEMDRNSIRIDEHSVPVIMQMYVNEGLVV 462
Query: 380 GAGQITNIMRIEEFQ--PTLESCTL--LVEAYGQAGDPDQARSNFDYMIR--LGHKPDDR 433
A + E FQ L S TL +++ Y + G +A + F Y R G + D
Sbjct: 463 QAKAL-----FERFQLDCVLSSTTLAAVIDVYAEKGLWVEAETVF-YGKRNMSGQRNDVL 516
Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
MI AYGK L +KAL+L ++ G P TY L L + L++EA+++L ++
Sbjct: 517 EYNVMIKAYGKAKLHEKALSLFKGMKNQGTWPDECTYNSLFQMLAGVDLVDEAQRILAEM 576
Query: 494 SELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLAGG 551
+ G P K ++ Y R G+ A+ +E K + P++ + +ING G
Sbjct: 577 LDSGCKPGCKTYAAMIASYVRLGLLSDAVDLYEAME--KTGVKPNEVVYGSLINGFAESG 634
Query: 552 FLQDAQRVHGLMEAQGFAASERLKVALISSQT 583
+++A + +ME G ++ + +LI + +
Sbjct: 635 MVEEAIQYFRMMEEHGVQSNHIVLTSLIKAYS 666
Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 96/209 (45%)
Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
+ +V +Y+ +I A+ K E A + K M G PD T L M + +D A+
Sbjct: 512 RNDVLEYNVMIKAYGKAKLHEKALSLFKGMKNQGTWPDECTYNSLFQMLAGVDLVDEAQR 571
Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
+ G +P K Y +MI +YV G + L + M +G++ +E +Y +L+ FA
Sbjct: 572 ILAEMLDSGCKPGCKTYAAMIASYVRLGLLSDAVDLYEAMEKTGVKPNEVVYGSLINGFA 631
Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
+ G V A Q +M Q T L++AY + G ++AR +D M PD
Sbjct: 632 ESGMVEEAIQYFRMMEEHGVQSNHIVLTSLIKAYSKVGCLEEARRVYDKMKDSEGGPDVA 691
Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDG 462
+ SM++ ++ +A ++ L + G
Sbjct: 692 ASNSMLSLCADLGIVSEAESIFNALREKG 720
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 85/397 (21%), Positives = 166/397 (41%), Gaps = 26/397 (6%)
Query: 181 PEEPKPITGKCKLITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLY 240
P +P+ +T + D + D + L +E + P ID + + T +
Sbjct: 299 PRKPR-LTSTFNTLIDLYGKAGRLNDAANLFSEMLKSGVP--IDTVTFNTMIHTCGTHGH 355
Query: 241 FKVAELVLS---EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTV 297
AE +L E+ + + Y+ L+ HA +E A +K+ + G+ PD VT
Sbjct: 356 LSEAESLLKKMEEKGISPDTKTYNILLSLHADAGDIEAALEYYRKIRKVGLFPDTVTHRA 415
Query: 298 LVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAG----------QPKLGM 347
++H+ + + + + + + D+ ++ YVN G + +L
Sbjct: 416 VLHILCQRKMVAEVEAVIAEMDRNSIRIDEHSVPVIMQMYVNEGLVVQAKALFERFQLDC 475
Query: 348 SLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAY 407
L + + I+ E L + G +GQ +++ ++++AY
Sbjct: 476 VLSSTTLAAVIDVYAEKGLWVEAETVFYGKRNMSGQRNDVLEY----------NVMIKAY 525
Query: 408 GQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGP 467
G+A ++A S F M G PD+ S+ +L+D+A +L E+ G +PG
Sbjct: 526 GKAKLHEKALSLFKGMKNQGTWPDECTYNSLFQMLAGVDLVDEAQRILAEMLDSGCKPGC 585
Query: 468 ATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGF 527
TY ++ RL L+++A L + + G P + SL + +A +G+ ++A+Q
Sbjct: 586 KTYAAMIASYVRLGLLSDAVDLYEAMEKTGVKPNEVVYGSLINGFAESGMVEEAIQYFRM 645
Query: 528 LEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLME 564
+E Q +I G L++A+RV+ M+
Sbjct: 646 MEEHGVQSNHIVLTSLIKAYSKVGCLEEARRVYDKMK 682
Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/245 (23%), Positives = 110/245 (44%), Gaps = 15/245 (6%)
Query: 261 SKLIDAHAKENCLEDAERILK-KMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
+ +ID +A++ +AE + K N +G D++ V++ Y KA ++A F+ ++
Sbjct: 483 AAVIDVYAEKGLWVEAETVFYGKRNMSGQRNDVLEYNVMIKAYGKAKLHEKALSLFKGMK 542
Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVD-------MMITSGIERSEEIYLALLRSF 372
+ G PD+ YNS+ Q G+ LVD M+ SG + + Y A++ S+
Sbjct: 543 NQGTWPDECTYNSLF-------QMLAGVDLVDEAQRILAEMLDSGCKPGCKTYAAMIASY 595
Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
+ G + A + M +P L+ + ++G ++A F M G + +
Sbjct: 596 VRLGLLSDAVDLYEAMEKTGVKPNEVVYGSLINGFAESGMVEEAIQYFRMMEEHGVQSNH 655
Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
S+I AY K L++A + +++ P A ++ L +++EAE +
Sbjct: 656 IVLTSLIKAYSKVGCLEEARRVYDKMKDSEGGPDVAASNSMLSLCADLGIVSEAESIFNA 715
Query: 493 ISELG 497
+ E G
Sbjct: 716 LREKG 720
Score = 63.2 bits (152), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 86/367 (23%), Positives = 148/367 (40%), Gaps = 40/367 (10%)
Query: 183 EPKPITGKCK---LITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNT-Q 238
+P P + K K +I + SL+ D LA L P + L+EQ +
Sbjct: 72 KPNPSSRKRKYGGVIPSILRSLDSSTDIETTLASLCLNLSPKEQTVL-----LKEQTRWE 126
Query: 239 LYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVL 298
+V S +S+ NV Y+ ++ A + ++ +M NG++P T +L
Sbjct: 127 RVLRVFRFFQSHQSYVPNVIHYNIVLRALGRAGKWDELRLCWIEMAHNGVLPTNNTYGML 186
Query: 299 VHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGI 358
V +Y KAG + A + + PD+ +++ + N+G+ D
Sbjct: 187 VDVYGKAGLVKEALLWIKHMGQRMHFPDEVTMATVVRVFKNSGE----FDRADRFFKGWC 242
Query: 359 ERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ-----PTLESCTLLVEAYGQAGDP 413
++ L + F + G + + + +E F+ P +S L A G P
Sbjct: 243 AGKVDLDLDSIDDFPKNGSAQSPVNLKQFLSMELFKVGARNPIEKS---LHFASGSDSSP 299
Query: 414 DQAR--SNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYT 471
+ R S F+ +I L YGK L+ A NL E+ K G T+
Sbjct: 300 RKPRLTSTFNTLIDL---------------YGKAGRLNDAANLFSEMLKSGVPIDTVTFN 344
Query: 472 VLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAK 531
++ G ++EAE LL K+ E G +P K L ++A AG + AL+ + + +
Sbjct: 345 TMIHTCGTHGHLSEAESLLKKMEEKGISPDTKTYNILLSLHADAGDIEAALEY--YRKIR 402
Query: 532 KEQMGPD 538
K + PD
Sbjct: 403 KVGLFPD 409
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/296 (21%), Positives = 120/296 (40%), Gaps = 40/296 (13%)
Query: 240 YFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLV 299
YF++ E E Q+N + LI A++K CLE+A R+ KM ++ PD+ S ++
Sbjct: 642 YFRMME----EHGVQSNHIVLTSLIKAYSKVGCLEEARRVYDKMKDSEGGPDVAASNSML 697
Query: 300 HMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIE 359
+ + G + A+ F +LR G D + +M+ Y G + + + M SG+
Sbjct: 698 SLCADLGIVSEAESIFNALREKG-TCDVISFATMMYLYKGMGMLDEAIEVAEEMRESGLL 756
Query: 360 RSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE--------FQPTL----------ESCT 401
+ ++ +A G + ++ + M +E F+ E+ +
Sbjct: 757 SDCTSFNQVMACYAADGQLSECCELFHEMLVERKLLLDWGTFKTLFTLLKKGGVPSEAVS 816
Query: 402 LLVEAYGQA---GDPDQARSNFDYM------------IRLGHKPDDR-CTASMIAAYGKK 445
L AY +A P + F M + G P + ++I Y
Sbjct: 817 QLQTAYNEAKPLATPAITATLFSAMGLYAYALESCQELTSGEIPREHFAYNAVIYTYSAS 876
Query: 446 NLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPP 501
+D AL + +++ G EP T LV G+ ++ +++ +++ GE P
Sbjct: 877 GDIDMALKAYMRMQEKGLEPDIVTQAYLVGIYGKAGMVEGVKRVHSRLT-FGELEP 931
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 65/291 (22%), Positives = 108/291 (37%), Gaps = 6/291 (2%)
Query: 294 TSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMM 353
T L+ +Y KAG L+ A F + G D +N+MI G SL+ M
Sbjct: 307 TFNTLIDLYGKAGRLNDAANLFSEMLKSGVPIDTVTFNTMIHTCGTHGHLSEAESLLKKM 366
Query: 354 ITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDP 413
GI + Y LL A GD+ A + +R P + ++ Q
Sbjct: 367 EEKGISPDTKTYNILLSLHADAGDIEAALEYYRKIRKVGLFPDTVTHRAVLHILCQRKMV 426
Query: 414 DQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVL 473
+ + M R + D+ ++ Y + L+ +A L + D T +
Sbjct: 427 AEVEAVIAEMDRNSIRIDEHSVPVIMQMYVNEGLVVQAKALFERFQLDCV-LSSTTLAAV 485
Query: 474 VDWLGRLQLINEAEQLL-GKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKK 532
+D L EAE + GK + G+ + Y +A + +KAL F K
Sbjct: 486 IDVYAEKGLWVEAETVFYGKRNMSGQRNDVLEYNVMIKAYGKAKLHEKALSL--FKGMKN 543
Query: 533 EQMGPDD--FERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
+ PD+ + + L + +AQR+ M G + A+I+S
Sbjct: 544 QGTWPDECTYNSLFQMLAGVDLVDEAQRILAEMLDSGCKPGCKTYAAMIAS 594
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%)
Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
Y+ +I ++ ++ A + +M E G+ PDIVT LV +Y KAG ++ K L
Sbjct: 866 YNAVIYTYSASGDIDMALKAYMRMQEKGLEPDIVTQAYLVGIYGKAGMVEGVKRVHSRLT 925
Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLG 346
+P + ++ ++ AYV+A + L
Sbjct: 926 FGELEPSQSLFKAVRDAYVSANRQDLA 952
>sp|Q8S9D1|PP395_ARATH Pentatricopeptide repeat-containing protein At5g21222
OS=Arabidopsis thaliana GN=ATC401 PE=2 SV=1
Length = 831
Score = 96.7 bits (239), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 87/383 (22%), Positives = 167/383 (43%), Gaps = 46/383 (12%)
Query: 221 SRIDWIN-LLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERI 279
SR +N L++R R Q F L EE + ++ Y+ L+ A ++ +
Sbjct: 321 SRTKLMNGLIERGRPQEAHSIFNT----LIEEGHKPSLITYTTLVTALTRQKHFHSLLSL 376
Query: 280 LKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVN 339
+ K+ +NG+ PD + +++ S++GNLD+A + FE ++ G +P +N++I Y
Sbjct: 377 ISKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGK 436
Query: 340 AGQPKLGMSLVDMMI------------------------------------TSGIERSEE 363
G+ + L+DMM+ + G++
Sbjct: 437 IGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVV 496
Query: 364 IYLALLRSFAQCGDVRGA-GQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDY 422
+ L +++A+ G A I M + +P + +C +V Y + G ++A F
Sbjct: 497 TFNTLAKAYARIGSTCTAEDMIIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYR 556
Query: 423 MIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQL 482
M LG P+ S+I + N +D ++ +E+ G +P T++ L++ +
Sbjct: 557 MKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGD 616
Query: 483 INEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--F 540
+ E++ + E G P L YARAG +KA Q L + +K + P+ +
Sbjct: 617 MKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILN--QMRKFGVRPNVVIY 674
Query: 541 ERIINGLLAGGFLQDAQRVHGLM 563
+II+G + G ++ A +V+ M
Sbjct: 675 TQIISGWCSAGEMKKAMQVYKKM 697
Score = 83.2 bits (204), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 59/264 (22%), Positives = 122/264 (46%), Gaps = 2/264 (0%)
Query: 256 NVRDYSKLIDAHAKENCLEDAE-RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEA 314
+V ++ L A+A+ AE I+ +M N + P++ T +V+ Y + G ++ A
Sbjct: 494 DVVTFNTLAKAYARIGSTCTAEDMIIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRF 553
Query: 315 FESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ 374
F ++ G P+ V+NS+I ++N +VD+M G++ + L+ +++
Sbjct: 554 FYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSS 613
Query: 375 CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
GD++ +I M P + + ++L + Y +AG+P++A + M + G +P+
Sbjct: 614 VGDMKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQMRKFGVRPNVVI 673
Query: 435 TASMIAAYGKKNLLDKALNLLLELEK-DGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
+I+ + + KA+ + ++ G P TY L+ G + +AE+LL +
Sbjct: 674 YTQIISGWCSAGEMKKAMQVYKKMCGIVGLSPNLTTYETLIWGFGEAKQPWKAEELLKDM 733
Query: 494 SELGEAPPFKIQVSLCDMYARAGI 517
P K + D + G+
Sbjct: 734 EGKNVVPTRKTMQLIADGWKSIGV 757
Score = 72.4 bits (176), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 88/184 (47%), Gaps = 6/184 (3%)
Query: 234 EQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIV 293
E+ + ++++ EL N+ ++ LI N ++ ++ M E G+ PD+V
Sbjct: 548 EEALRFFYRMKEL-----GVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVV 602
Query: 294 TSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMM 353
T + L++ +S G++ R +E + + G PD ++ + Y AG+P+ +++ M
Sbjct: 603 TFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQM 662
Query: 354 ITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIM-RIEEFQPTLESCTLLVEAYGQAGD 412
G+ + IY ++ + G+++ A Q+ M I P L + L+ +G+A
Sbjct: 663 RKFGVRPNVVIYTQIISGWCSAGEMKKAMQVYKKMCGIVGLSPNLTTYETLIWGFGEAKQ 722
Query: 413 PDQA 416
P +A
Sbjct: 723 PWKA 726
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/265 (21%), Positives = 119/265 (44%), Gaps = 2/265 (0%)
Query: 246 LVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKA 305
++ S + +VR +KL++ + ++A I + E G P ++T T LV ++
Sbjct: 308 VICSGGTTCGDVRSRTKLMNGLIERGRPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQ 367
Query: 306 GNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIY 365
+ + +G +PD ++N++I A +G M + + M SG + + +
Sbjct: 368 KHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTF 427
Query: 366 LALLRSFAQCGDVRGAGQITNIM-RIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMI 424
L++ + + G + + ++ ++M R E QP +C +LV+A+ ++A + M
Sbjct: 428 NTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQ 487
Query: 425 RLGHKPDDRCTASMIAAYGKKNLLDKALNLLL-ELEKDGFEPGPATYTVLVDWLGRLQLI 483
G KPD ++ AY + A ++++ + + +P T +V+ +
Sbjct: 488 SYGVKPDVVTFNTLAKAYARIGSTCTAEDMIIPRMLHNKVKPNVRTCGTIVNGYCEEGKM 547
Query: 484 NEAEQLLGKISELGEAPPFKIQVSL 508
EA + ++ ELG P + SL
Sbjct: 548 EEALRFFYRMKELGVHPNLFVFNSL 572
Score = 70.5 bits (171), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 74/360 (20%), Positives = 154/360 (42%), Gaps = 25/360 (6%)
Query: 227 NLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNEN 286
NL+ R+ + N + E +L + F+ +DY + KE L D E + K E
Sbjct: 243 NLIVRILDPNPMTRITIPE-ILEDVWFK---KDYKPAVFEEKKEANLADVEAVFKDSEEG 298
Query: 287 GI---------------VPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYN 331
+ D+ + T L++ + G A F +L G +P Y
Sbjct: 299 RVQLRSFPCVICSGGTTCGDVRSRTKLMNGLIERGRPQEAHSIFNTLIEEGHKPSLITYT 358
Query: 332 SMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE 391
+++ A +SL+ + +G++ ++ A++ + ++ G++ A +I M+
Sbjct: 359 TLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKMKES 418
Query: 392 EFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGH-KPDDRCTASMIAAYGKKNLLDK 450
+PT + L++ YG+ G +++ D M+R +P+DR ++ A+ + +++
Sbjct: 419 GCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEE 478
Query: 451 ALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL-LGKISELGEAPPFKIQVSLC 509
A N++ +++ G +P T+ L R+ AE + + ++ P + ++
Sbjct: 479 AWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMIIPRMLHNKVKPNVRTCGTIV 538
Query: 510 DMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQG 567
+ Y G ++AL+ F K+ + P+ F +I G L + V LME G
Sbjct: 539 NGYCEEGKMEEALRF--FYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFG 596
>sp|Q9SZ20|PP339_ARATH Pentatricopeptide repeat-containing protein At4g26800
OS=Arabidopsis thaliana GN=At4g26800 PE=2 SV=2
Length = 514
Score = 96.7 bits (239), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 69/274 (25%), Positives = 119/274 (43%)
Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
+ + NV YS LI K L DAER L +M+ I P+++T + L+ Y+K G
Sbjct: 219 MKDRGISPNVVTYSSLITGLCKSGRLADAERRLHEMDSKKINPNVITFSALIDAYAKRGK 278
Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
L + ++ + P+ Y+S+I + + ++D+MI+ G + Y
Sbjct: 279 LSKVDSVYKMMIQMSIDPNVFTYSSLIYGLCMHNRVDEAIKMLDLMISKGCTPNVVTYST 338
Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
L F + V ++ + M SC L++ Y QAG D A F YM G
Sbjct: 339 LANGFFKSSRVDDGIKLLDDMPQRGVAANTVSCNTLIKGYFQAGKIDLALGVFGYMTSNG 398
Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
P+ R ++A ++KAL+ ++K + TYT+++ + + ++ EA
Sbjct: 399 LIPNIRSYNIVLAGLFANGEVEKALSRFEHMQKTRNDLDIITYTIMIHGMCKACMVKEAY 458
Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKA 521
L K+ P FK + RAG+ +A
Sbjct: 459 DLFYKLKFKRVEPDFKAYTIMIAELNRAGMRTEA 492
Score = 76.6 bits (187), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 107/234 (45%)
Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
NV +S LIDA+AK L + + K M + I P++ T + L++ +D A +
Sbjct: 262 NVITFSALIDAYAKRGKLSKVDSVYKMMIQMSIDPNVFTYSSLIYGLCMHNRVDEAIKML 321
Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
+ + S G P+ Y+++ + + + G+ L+D M G+ + L++ + Q
Sbjct: 322 DLMISKGCTPNVVTYSTLANGFFKSSRVDDGIKLLDDMPQRGVAANTVSCNTLIKGYFQA 381
Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
G + A + M P + S +++ G+ ++A S F++M + + D
Sbjct: 382 GKIDLALGVFGYMTSNGLIPNIRSYNIVLAGLFANGEVEKALSRFEHMQKTRNDLDIITY 441
Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
MI K ++ +A +L +L+ EP YT+++ L R + EA+ L
Sbjct: 442 TIMIHGMCKACMVKEAYDLFYKLKFKRVEPDFKAYTIMIAELNRAGMRTEADAL 495
Score = 67.4 bits (163), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/277 (22%), Positives = 121/277 (43%)
Query: 280 LKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVN 339
L KM + GI PDIVT++ LV+ + + ++ A + G + D V +I
Sbjct: 146 LGKMMKLGIEPDIVTASSLVNGFCLSNSIKDAVYVAGQMEKMGIKRDVVVDTILIDTLCK 205
Query: 340 AGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLES 399
+ ++ M GI + Y +L+ + G + A + + M ++ P + +
Sbjct: 206 NRLVVPALEVLKRMKDRGISPNVVTYSSLITGLCKSGRLADAERRLHEMDSKKINPNVIT 265
Query: 400 CTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELE 459
+ L++AY + G + S + MI++ P+ +S+I N +D+A+ +L +
Sbjct: 266 FSALIDAYAKRGKLSKVDSVYKMMIQMSIDPNVFTYSSLIYGLCMHNRVDEAIKMLDLMI 325
Query: 460 KDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEK 519
G P TY+ L + + +++ +LL + + G A +L Y +AG
Sbjct: 326 SKGCTPNVVTYSTLANGFFKSSRVDDGIKLLDDMPQRGVAANTVSCNTLIKGYFQAGKID 385
Query: 520 KALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDA 556
AL G++ + + ++ GL A G ++ A
Sbjct: 386 LALGVFGYMTSNGLIPNIRSYNIVLAGLFANGEVEKA 422
Score = 60.8 bits (146), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 80/172 (46%)
Query: 392 EFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKA 451
E P L +C +LV + + P A S M++LG +PD +S++ + N + A
Sbjct: 118 EISPDLYTCNILVNCFCRCFQPSSALSYLGKMMKLGIEPDIVTASSLVNGFCLSNSIKDA 177
Query: 452 LNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDM 511
+ + ++EK G + T+L+D L + +L+ A ++L ++ + G +P SL
Sbjct: 178 VYVAGQMEKMGIKRDVVVDTILIDTLCKNRLVVPALEVLKRMKDRGISPNVVTYSSLITG 237
Query: 512 YARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLM 563
++G A + L +++KK F +I+ G L V+ +M
Sbjct: 238 LCKSGRLADAERRLHEMDSKKINPNVITFSALIDAYAKRGKLSKVDSVYKMM 289
>sp|Q9SSF9|PP123_ARATH Pentatricopeptide repeat-containing protein At1g74750
OS=Arabidopsis thaliana GN=At1g74750 PE=2 SV=1
Length = 855
Score = 96.7 bits (239), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 106/215 (49%)
Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
Y LID HAK L+ A + ++M E G+ PD T +V+++ KAG+L A F +
Sbjct: 432 YCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTYSVIINCLGKAGHLPAAHRLFCEMV 491
Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
G P+ +N MI + A + + L M +G + + Y ++ CG +
Sbjct: 492 GQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNAGFQPDKVTYSIVMEVLGHCGFLE 551
Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
A + M+ + + P LLV+ +G+AG+ D+A + M++ G +P+ S++
Sbjct: 552 EAEGVFAEMQRKNWVPDEPVYGLLVDLWGKAGNVDKAWQWYQAMLQAGLRPNVPTCNSLL 611
Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474
+ + + + + +A NLL + G P TYT+L+
Sbjct: 612 STFLRVHRMSEAYNLLQSMLALGLHPSLQTYTLLL 646
Score = 94.4 bits (233), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/265 (25%), Positives = 119/265 (44%), Gaps = 2/265 (0%)
Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
N Y++LI ++ + N L++A + +M E G PD VT L+ +++KAG LD A + +
Sbjct: 393 NTVTYNRLIHSYGRANYLKEAMNVFNQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMY 452
Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
+ ++ G PD Y+ +I AG L M+ G + + ++ A+
Sbjct: 453 QRMQEAGLSPDTFTYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKA 512
Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
+ A ++ M+ FQP + ++++E G G ++A F M R PD+
Sbjct: 513 RNYETALKLYRDMQNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVPDEPVY 572
Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
++ +GK +DKA + + G P T L+ R+ ++EA LL +
Sbjct: 573 GLLVDLWGKAGNVDKAWQWYQAMLQAGLRPNVPTCNSLLSTFLRVHRMSEAYNLLQSMLA 632
Query: 496 LGEAPPFKIQVSL--CDMYARAGIE 518
LG P + L C AR+ +
Sbjct: 633 LGLHPSLQTYTLLLSCCTDARSNFD 657
Score = 84.7 bits (208), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/274 (21%), Positives = 110/274 (40%), Gaps = 35/274 (12%)
Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
+ F+ + Y+ ++ + + ++L +M +G P+ VT L+H Y +A L
Sbjct: 352 QPGFKHDGHTYTTMVGNLGRAKQFGEINKLLDEMVRDGCKPNTVTYNRLIHSYGRANYLK 411
Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
A F ++ G +PD+ Y ++I + AG + M + M +G+ Y ++
Sbjct: 412 EAMNVFNQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTYSVII 471
Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
+ G + A + L E GQ P+ N
Sbjct: 472 NCLGKAGHLPAAHR------------------LFCEMVGQGCTPNLVTFNI--------- 504
Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
MIA + K + AL L +++ GF+P TY+++++ LG + EAE +
Sbjct: 505 --------MIALHAKARNYETALKLYRDMQNAGFQPDKVTYSIVMEVLGHCGFLEEAEGV 556
Query: 490 LGKISELGEAPPFKIQVSLCDMYARAGIEKKALQ 523
++ P + L D++ +AG KA Q
Sbjct: 557 FAEMQRKNWVPDEPVYGLLVDLWGKAGNVDKAWQ 590
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/272 (21%), Positives = 121/272 (44%), Gaps = 18/272 (6%)
Query: 316 ESLRSHGFQPDKKVYNSMIMA---YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
E+L + GF+ D N ++ Y NA LG + G + Y ++ +
Sbjct: 315 EALHNFGFRMDAYQANQVLKQMDNYANA----LGF-FYWLKRQPGFKHDGHTYTTMVGNL 369
Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
+ ++ + M + +P + L+ +YG+A +A + F+ M G +PD
Sbjct: 370 GRAKQFGEINKLLDEMVRDGCKPNTVTYNRLIHSYGRANYLKEAMNVFNQMQEAGCEPDR 429
Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
++I + K LD A+++ +++ G P TY+V+++ LG+ + A +L +
Sbjct: 430 VTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTYSVIINCLGKAGHLPAAHRLFCE 489
Query: 493 ISELGEAP---PFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGL 547
+ G P F I ++L +A+A + AL+ + + + PD + ++ L
Sbjct: 490 MVGQGCTPNLVTFNIMIAL---HAKARNYETALKL--YRDMQNAGFQPDKVTYSIVMEVL 544
Query: 548 LAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
GFL++A+ V M+ + + E + L+
Sbjct: 545 GHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLV 576
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 65/132 (49%), Gaps = 3/132 (2%)
Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
+ FQ + YS +++ LE+AE + +M VPD +LV ++ KAGN
Sbjct: 525 MQNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDLWGKAGN 584
Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
+D+A + ++++ G +P+ NS++ ++ + +L+ M+ G+ S + Y
Sbjct: 585 VDKAWQWYQAMLQAGLRPNVPTCNSLLSTFLRVHRMSEAYNLLQSMLALGLHPSLQTYTL 644
Query: 368 LLRSFAQCGDVR 379
LL + C D R
Sbjct: 645 LL---SCCTDAR 653
>sp|Q9LUR2|PP238_ARATH Putative pentatricopeptide repeat-containing protein At3g16710,
mitochondrial OS=Arabidopsis thaliana GN=At3g16710 PE=3
SV=1
Length = 507
Score = 96.3 bits (238), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 71/328 (21%), Positives = 148/328 (45%)
Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
F+ ++ ++ L++ + N +EDA + ++ G P++VT T L+ K +L+ A
Sbjct: 149 FEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAV 208
Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
E F + ++G +P+ YN+++ G+ L+ M+ IE + + AL+ +F
Sbjct: 209 ELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAF 268
Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
+ G + A ++ N+M P + + L+ G D+AR F M R G P++
Sbjct: 269 VKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNE 328
Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
++I + K ++ + + E+ + G TYTVL+ + + A+++ +
Sbjct: 329 VIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQ 388
Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGF 552
+S P + L D G +KAL ++ ++ + + II G+ G
Sbjct: 389 MSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGK 448
Query: 553 LQDAQRVHGLMEAQGFAASERLKVALIS 580
++DA + + ++G + +IS
Sbjct: 449 VEDAFDLFCSLFSKGMKPNVITYTTMIS 476
Score = 87.0 bits (214), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 60/245 (24%), Positives = 111/245 (45%)
Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
NV ++ LIDA K L +A+ + M + + PD+ T L++ G LD A++ F
Sbjct: 257 NVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMF 316
Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
+ +G P++ +Y ++I + + + + GM + M G+ + Y L++ +
Sbjct: 317 YLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLV 376
Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
G A ++ N M P + + +L++ G ++A F+YM + +
Sbjct: 377 GRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKREMDINIVTY 436
Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
+I K ++ A +L L G +P TYT ++ R LI+EA+ L K+ E
Sbjct: 437 TIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGLIHEADSLFKKMKE 496
Query: 496 LGEAP 500
G P
Sbjct: 497 DGFLP 501
Score = 82.8 bits (203), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 111/256 (43%)
Query: 215 KELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLE 274
K ++P+ I + L+D + + K V+ + S +V Y LI+ L+
Sbjct: 251 KRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLD 310
Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334
+A ++ M NG P+ V T L+H + K+ ++ + F + G + Y +I
Sbjct: 311 EARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLI 370
Query: 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ 394
Y G+P + + + M + Y LL G V A I MR E
Sbjct: 371 QGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKREMD 430
Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454
+ + T++++ + G + A F + G KP+ +MI+ + ++ L+ +A +L
Sbjct: 431 INIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGLIHEADSL 490
Query: 455 LLELEKDGFEPGPATY 470
++++DGF P + Y
Sbjct: 491 FKKMKEDGFLPNESVY 506
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/289 (21%), Positives = 122/289 (42%)
Query: 276 AERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335
A L KM + G PD+VT T L++ Y ++ A F+ + GF+P+ Y ++I
Sbjct: 137 ASCFLGKMMKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIR 196
Query: 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP 395
+ L + M T+G + Y AL+ + G A + M +P
Sbjct: 197 CLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEP 256
Query: 396 TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLL 455
+ + T L++A+ + G +A+ ++ MI++ PD S+I LLD+A +
Sbjct: 257 NVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMF 316
Query: 456 LELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARA 515
+E++G P YT L+ + + + + ++ ++S+ G L Y
Sbjct: 317 YLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLV 376
Query: 516 GIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLME 564
G A + + +++ + +++GL G ++ A + M
Sbjct: 377 GRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMR 425
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/311 (22%), Positives = 118/311 (37%), Gaps = 43/311 (13%)
Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
DA + +M + +P I+ T L+ + +K D FE ++ G P N
Sbjct: 64 FNDALDLFTRMVHSRPLPSIIDFTRLLSVIAKMNRYDVVISLFEQMQILGIPPLLCTCNI 123
Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
++ + QP + M+ G
Sbjct: 124 VMHCVCLSSQPCRASCFLGKMMKLG----------------------------------- 148
Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
F+P L + T L+ Y + A + FD ++ +G KP+ ++I K L+ A+
Sbjct: 149 FEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAV 208
Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
L ++ +G P TY LV L + +A LL + + P +L D +
Sbjct: 209 ELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAF 268
Query: 513 ARAG--IEKKALQALGFLEAKKEQMGPDDFE--RIINGLLAGGFLQDAQRVHGLMEAQGF 568
+ G +E K L + + + PD F +INGL G L +A+++ LME G
Sbjct: 269 VKVGKLMEAKELYNV----MIQMSVYPDVFTYGSLINGLCMYGLLDEARQMFYLMERNGC 324
Query: 569 AASERLKVALI 579
+E + LI
Sbjct: 325 YPNEVIYTTLI 335
>sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130,
mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2
SV=1
Length = 630
Score = 95.9 bits (237), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 73/267 (27%), Positives = 116/267 (43%)
Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
E NV +S LIDA KE L +AE++ +M + I PDI T + L++ + LD
Sbjct: 319 ERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLD 378
Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
AK FE + S P+ YN++I + A + GM L M G+ + Y L+
Sbjct: 379 EAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLI 438
Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
F Q + A + M + P + + ++L++ G + A F+Y+ R +
Sbjct: 439 HGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKME 498
Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
PD MI K ++ +L L G +P TYT ++ R L EA+ L
Sbjct: 499 PDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADAL 558
Query: 490 LGKISELGEAPPFKIQVSLCDMYARAG 516
++ E G P +L + R G
Sbjct: 559 FREMKEEGPLPDSGTYNTLIRAHLRDG 585
Score = 82.4 bits (202), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 73/342 (21%), Positives = 150/342 (43%), Gaps = 23/342 (6%)
Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
+ E +Q + ++ LI + N +A ++ +M G PD+VT ++V+ K G+
Sbjct: 177 MVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGD 236
Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
+D A + + +P +YN++I A N ++L M GI + Y +
Sbjct: 237 IDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNS 296
Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
L+R G A ++ + M + P + + + L++A+ + G +A +D MI+
Sbjct: 297 LIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRS 356
Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLL-LELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
PD +S+I + + LD+A ++ L + KD F P TY L+ + + ++E
Sbjct: 357 IDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCF-PNVVTYNTLIKGFCKAKRVDEG 415
Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIING 546
+L ++S+ G +L GF +A++ D+ + +
Sbjct: 416 MELFREMSQRGLVGNTVTYTTLIH---------------GFFQARE----CDNAQIVFKQ 456
Query: 547 LLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFNRQR 588
+++ G L D L++ G + +++ AL+ + R +
Sbjct: 457 MVSDGVLPDIMTYSILLD--GLCNNGKVETALVVFEYLQRSK 496
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 85/362 (23%), Positives = 141/362 (38%), Gaps = 56/362 (15%)
Query: 207 PSPLLAEWKELLQP-SRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLID 265
P P + E+ +LL ++++ +L+ L EQ L N+ YS LI+
Sbjct: 77 PFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNL------------GISHNLYTYSILIN 124
Query: 266 AHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQP 325
+ + L A +L KM + G PDIVT L++ + + A + G+QP
Sbjct: 125 CFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQP 184
Query: 326 DKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQIT 385
D +N++I + ++LVD M+ G
Sbjct: 185 DSFTFNTLIHGLFRHNRASEAVALVDRMVVKGC--------------------------- 217
Query: 386 NIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKK 445
QP L + ++V + GD D A S M + +P ++I A
Sbjct: 218 --------QPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNY 269
Query: 446 NLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQ 505
++ ALNL E++ G P TY L+ L ++A +LL + E P
Sbjct: 270 KNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTF 329
Query: 506 VSLCDMYARAG--IEKKALQALGFLEAKKEQMGPDDF--ERIINGLLAGGFLQDAQRVHG 561
+L D + + G +E + L + E K + PD F +ING L +A+ +
Sbjct: 330 SALIDAFVKEGKLVEAEKL----YDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFE 385
Query: 562 LM 563
LM
Sbjct: 386 LM 387
Score = 69.7 bits (169), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 62/264 (23%), Positives = 123/264 (46%), Gaps = 12/264 (4%)
Query: 221 SRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERIL 280
S I+ + DRL E EL++S++ F NV Y+ LI K +++ +
Sbjct: 366 SLINGFCMHDRLDEAKHMF-----ELMISKDCFP-NVVTYNTLIKGFCKAKRVDEGMELF 419
Query: 281 KKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNA 340
++M++ G+V + VT T L+H + +A D A+ F+ + S G PD Y+ ++ N
Sbjct: 420 REMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNN 479
Query: 341 GQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESC 400
G+ + + + + + S +E Y ++ + G V + + ++ +P + +
Sbjct: 480 GKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTY 539
Query: 401 TLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALN--LLLEL 458
T ++ + + G ++A + F M G PD ++I A+ + DKA + L+ E+
Sbjct: 540 TTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDG--DKAASAELIREM 597
Query: 459 EKDGFEPGPATYTVLVDWL--GRL 480
F +T ++ + L GRL
Sbjct: 598 RSCRFVGDASTIGLVTNMLHDGRL 621
Score = 68.9 bits (167), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/302 (21%), Positives = 123/302 (40%)
Query: 259 DYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESL 318
DY K+ + L+DA + M ++ P IV + L+ +K D E +
Sbjct: 48 DYRKISINRLNDLKLDDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQM 107
Query: 319 RSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378
++ G + Y+ +I + Q L ++++ M+ G E +LL F +
Sbjct: 108 QNLGISHNLYTYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRI 167
Query: 379 RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
A + M +QP + L+ + +A + D M+ G +PD +
Sbjct: 168 SDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIV 227
Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498
+ K+ +D AL+LL ++E+ EPG Y ++D L + +N+A L ++ G
Sbjct: 228 VNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGI 287
Query: 499 APPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQR 558
P SL G A + L + +K F +I+ + G L +A++
Sbjct: 288 RPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEK 347
Query: 559 VH 560
++
Sbjct: 348 LY 349
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/172 (21%), Positives = 77/172 (44%)
Query: 396 TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLL 455
L + ++L+ + + A + M++LG++PD S++ + N + A++L+
Sbjct: 115 NLYTYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLV 174
Query: 456 LELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARA 515
++ + G++P T+ L+ L R +EA L+ ++ G P + + +
Sbjct: 175 GQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKR 234
Query: 516 GIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQG 567
G AL L +E K + G + II+ L + DA + M+ +G
Sbjct: 235 GDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKG 286
>sp|Q9C6S6|PPR67_ARATH Putative pentatricopeptide repeat-containing protein At1g31840
OS=Arabidopsis thaliana GN=At1g31840 PE=2 SV=2
Length = 840
Score = 95.5 bits (236), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/344 (22%), Positives = 152/344 (44%), Gaps = 7/344 (2%)
Query: 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309
E F+ + +K++ + + +E A R+L + + G P++VT L++ + K G +D
Sbjct: 245 ERGFRVGIVSCNKVLKGLSVDQ-IEVASRLLSLVLDCGPAPNVVTFCTLINGFCKRGEMD 303
Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
RA + F+ + G +PD Y+++I Y AG +G L + G++ ++ + +
Sbjct: 304 RAFDLFKVMEQRGIEPDLIAYSTLIDGYFKAGMLGMGHKLFSQALHKGVKLDVVVFSSTI 363
Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK 429
+ + GD+ A + M + P + + T+L++ Q G +A + +++ G +
Sbjct: 364 DVYVKSGDLATASVVYKRMLCQGISPNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGME 423
Query: 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
P +S+I + K L L ++ K G+ P Y VLVD L + L+ A +
Sbjct: 424 PSIVTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGLSKQGLMLHAMRF 483
Query: 490 LGKISELGEAPPFKIQV--SLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
+ LG++ + V SL D + R +AL+ + + F ++
Sbjct: 484 --SVKMLGQSIRLNVVVFNSLIDGWCRLNRFDEALKVFRLMGIYGIKPDVATFTTVMRVS 541
Query: 548 LAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFNRQRQPT 591
+ G L++A + M G LI + F + +PT
Sbjct: 542 IMEGRLEEALFLFFRMFKMGLEPDALAYCTLIDA--FCKHMKPT 583
Score = 95.1 bits (235), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 80/361 (22%), Positives = 156/361 (43%), Gaps = 4/361 (1%)
Query: 220 PSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERI 279
P + + L+D L +Q L+ + + +S + NV ++ LID + N ++A ++
Sbjct: 459 PDVVIYGVLVDGLSKQGLMLHAMRFSVKMLGQSIRLNVVVFNSLIDGWCRLNRFDEALKV 518
Query: 280 LKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVN 339
+ M GI PD+ T T ++ + G L+ A F + G +PD Y ++I A+
Sbjct: 519 FRLMGIYGIKPDVATFTTVMRVSIMEGRLEEALFLFFRMFKMGLEPDALAYCTLIDAFCK 578
Query: 340 AGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLES 399
+P +G+ L D+M + I + ++ +C + A + N + + +P + +
Sbjct: 579 HMKPTIGLQLFDLMQRNKISADIAVCNVVIHLLFKCHRIEDASKFFNNLIEGKMEPDIVT 638
Query: 400 CTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELE 459
++ Y D+A F+ + P+ +I K N +D A+ + +
Sbjct: 639 YNTMICGYCSLRRLDEAERIFELLKVTPFGPNTVTLTILIHVLCKNNDMDGAIRMFSIMA 698
Query: 460 KDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEK 519
+ G +P TY L+DW + I + +L ++ E G +P + D + G
Sbjct: 699 EKGSKPNAVTYGCLMDWFSKSVDIEGSFKLFEEMQEKGISPSIVSYSIIIDGLCKRGRVD 758
Query: 520 KALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVA 577
+A F +A ++ PD + +I G G L +A ++ M G + L+ A
Sbjct: 759 EATNI--FHQAIDAKLLPDVVAYAILIRGYCKVGRLVEAALLYEHMLRNGVKPDDLLQRA 816
Query: 578 L 578
L
Sbjct: 817 L 817
Score = 62.8 bits (151), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 51/251 (20%), Positives = 106/251 (42%), Gaps = 1/251 (0%)
Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
+ NV Y+ LI ++ + +A + ++ + G+ P IVT + L+ + K GNL
Sbjct: 385 QGISPNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLIDGFCKCGNLRS 444
Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
+E + G+ PD +Y ++ G M M+ I + ++ +L+
Sbjct: 445 GFALYEDMIKMGYPPDVVIYGVLVDGLSKQGLMLHAMRFSVKMLGQSIRLNVVVFNSLID 504
Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
+ + A ++ +M I +P + + T ++ G ++A F M ++G +P
Sbjct: 505 GWCRLNRFDEALKVFRLMGIYGIKPDVATFTTVMRVSIMEGRLEEALFLFFRMFKMGLEP 564
Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
D ++I A+ K L L ++++ A V++ L + I +A +
Sbjct: 565 DALAYCTLIDAFCKHMKPTIGLQLFDLMQRNKISADIAVCNVVIHLLFKCHRIEDASKFF 624
Query: 491 GKISELGEAPP 501
+ E G+ P
Sbjct: 625 NNLIE-GKMEP 634
>sp|Q9S7R4|PP125_ARATH Pentatricopeptide repeat-containing protein At1g74900,
mitochondrial OS=Arabidopsis thaliana GN=OTP43 PE=2 SV=1
Length = 482
Score = 95.1 bits (235), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 125/266 (46%), Gaps = 8/266 (3%)
Query: 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333
+ A ++ M+E+G D+ + ++ + K+ +++A E F +LR F D YN +
Sbjct: 143 DKAVKLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRALRGR-FSVDTVTYNVI 201
Query: 334 IMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF 393
+ + + + ++ M+ GI + Y +L+ F + G +R A + M+ +
Sbjct: 202 LNGWCLIKRTPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDC 261
Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALN 453
+ + + T +V +G AG+ +AR+ FD MIR G P +MI KK+ ++ A+
Sbjct: 262 EIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVV 321
Query: 454 LLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYA 513
+ E+ + G+EP TY VL+ L + E+L+ ++ G P F+ + Y+
Sbjct: 322 MFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYS 381
Query: 514 RAGIEKKALQALGFLEAKKEQMGPDD 539
+KAL E+MG D
Sbjct: 382 ECSEVEKALGLF-------EKMGSGD 400
Score = 67.0 bits (162), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/223 (21%), Positives = 99/223 (44%)
Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
F + Y+ +++ A +LK+M E GI P++ T ++ + +AG + A
Sbjct: 191 FSVDTVTYNVILNGWCLIKRTPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAW 250
Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
E F ++ + D Y +++ + AG+ K ++ D MI G+ S Y A+++
Sbjct: 251 EFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQVL 310
Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
+ +V A + M ++P + + +L+ AG+ + M G +P+
Sbjct: 311 CKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEPNF 370
Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475
+ MI Y + + ++KAL L ++ P TY +L+
Sbjct: 371 QTYNMMIRYYSECSEVEKALGLFEKMGSGDCLPNLDTYNILIS 413
Score = 67.0 bits (162), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/233 (21%), Positives = 98/233 (42%), Gaps = 3/233 (1%)
Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
+ E N+ Y+ ++ + + A +M + D+VT T +VH + AG
Sbjct: 221 MVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGE 280
Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
+ RA+ F+ + G P YN+MI + + + + M+ G E + Y
Sbjct: 281 IKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNV 340
Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
L+R G+ ++ M E +P ++ +++ Y + + ++A F+ M
Sbjct: 341 LIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGSGD 400
Query: 428 HKPD-DRCTASMIAAYGKKNLLDKAL--NLLLELEKDGFEPGPATYTVLVDWL 477
P+ D + + +K D + LLLE+ + GF P T+ +++ L
Sbjct: 401 CLPNLDTYNILISGMFVRKRSEDMVVAGKLLLEMVERGFIPRKFTFNRVLNGL 453
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 84/185 (45%), Gaps = 10/185 (5%)
Query: 232 LREQNTQL--YFKVAELVLSEESF--------QTNVRDYSKLIDAHAKENCLEDAERILK 281
L NT L +F+ ++ + E F + +V Y+ ++ ++ A +
Sbjct: 230 LTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFD 289
Query: 282 KMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAG 341
+M G++P + T ++ + K N++ A FE + G++P+ YN +I +AG
Sbjct: 290 EMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAG 349
Query: 342 QPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCT 401
+ G L+ M G E + + Y ++R +++C +V A + M + P L++
Sbjct: 350 EFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGSGDCLPNLDTYN 409
Query: 402 LLVEA 406
+L+
Sbjct: 410 ILISG 414
>sp|Q9LVQ5|PP432_ARATH Pentatricopeptide repeat-containing protein At5g55840
OS=Arabidopsis thaliana GN=At5g55840 PE=2 SV=2
Length = 1096
Score = 94.7 bits (234), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 79/307 (25%), Positives = 128/307 (41%), Gaps = 16/307 (5%)
Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRD--------YSKLIDAHAK 269
L PS + + LLD L K AE L+ + R+ Y+ +ID K
Sbjct: 364 LTPSEVSYGVLLDGL--------CKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCK 415
Query: 270 ENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKV 329
L++A +L +M+++GI PDIVT + L++ + K G AKE + G P+ +
Sbjct: 416 NGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGII 475
Query: 330 YNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMR 389
Y+++I G K + + + MI G R + L+ S + G V A + M
Sbjct: 476 YSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMT 535
Query: 390 IEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLD 449
+ P S L+ YG +G+ +A S FD M ++GH P S++ K L
Sbjct: 536 SDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLR 595
Query: 450 KALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLC 509
+A L L Y L+ + + + +A L G++ + P SL
Sbjct: 596 EAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLI 655
Query: 510 DMYARAG 516
R G
Sbjct: 656 SGLCRKG 662
Score = 94.0 bits (232), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 75/347 (21%), Positives = 146/347 (42%), Gaps = 35/347 (10%)
Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
+V ++ LI+ E E + +++KM ++G P IVT ++H Y K G A E
Sbjct: 192 DVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELL 251
Query: 316 ESLRSHG-----------------------------------FQPDKKVYNSMIMAYVNA 340
+ ++S G P++ YN++I + N
Sbjct: 252 DHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNE 311
Query: 341 GQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESC 400
G+ + L++ M++ G+ + + AL+ G+ + A ++ +M + P+ S
Sbjct: 312 GKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSY 371
Query: 401 TLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEK 460
+L++ + + D AR + M R G MI K LD+A+ LL E+ K
Sbjct: 372 GVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSK 431
Query: 461 DGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKK 520
DG +P TY+ L++ ++ A++++ +I +G +P I +L R G K+
Sbjct: 432 DGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKE 491
Query: 521 ALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQG 567
A++ + + F ++ L G + +A+ M + G
Sbjct: 492 AIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDG 538
Score = 73.6 bits (179), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/283 (20%), Positives = 114/283 (40%), Gaps = 4/283 (1%)
Query: 279 ILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYV 338
LK+M + I PD+ T +L+++ G+ +++ + + G+ P YN+++ Y
Sbjct: 180 FLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYC 239
Query: 339 NAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLE 398
G+ K + L+D M + G++ Y L+ + + + MR P
Sbjct: 240 KKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEV 299
Query: 399 SCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLEL 458
+ L+ + G A + M+ G P+ ++I + + +AL + +
Sbjct: 300 TYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMM 359
Query: 459 EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIE 518
E G P +Y VL+D L + + A ++ G + D + G
Sbjct: 360 EAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFL 419
Query: 519 KKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRV 559
+A+ L E K+ + PD + +ING G + A+ +
Sbjct: 420 DEAVVLLN--EMSKDGIDPDIVTYSALINGFCKVGRFKTAKEI 460
Score = 72.4 bits (176), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 78/337 (23%), Positives = 140/337 (41%), Gaps = 6/337 (1%)
Query: 218 LQPSRIDWINLLD-RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
L P+ + + L+D + E N + K+ ++ ++ + V Y L+D K + A
Sbjct: 329 LSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEV-SYGVLLDGLCKNAEFDLA 387
Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
+M NG+ +T T ++ K G LD A + G PD Y+++I
Sbjct: 388 RGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALING 447
Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
+ G+ K +V + G+ + IY L+ + + G ++ A +I M +E
Sbjct: 448 FCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRD 507
Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
+ +LV + +AG +A M G P+ +I YG KA ++
Sbjct: 508 HFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFD 567
Query: 457 ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
E+ K G P TY L+ L + + EAE+ L + + A + +L ++G
Sbjct: 568 EMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSG 627
Query: 517 IEKKALQALGFLEAKKEQMGPDD--FERIINGLLAGG 551
KA+ G E + + PD + +I+GL G
Sbjct: 628 NLAKAVSLFG--EMVQRSILPDSYTYTSLISGLCRKG 662
Score = 70.9 bits (172), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 76/369 (20%), Positives = 147/369 (39%), Gaps = 6/369 (1%)
Query: 215 KELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEE-SF--QTNVRDYSKLIDAHAKEN 271
K ++ P+ + + L++ + L +A +L+E SF N ++ LID H E
Sbjct: 291 KRMIHPNEVTYNTLINGFSNEGKVL---IASQLLNEMLSFGLSPNHVTFNALIDGHISEG 347
Query: 272 CLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYN 331
++A ++ M G+ P V+ VL+ K D A+ + ++ +G + Y
Sbjct: 348 NFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYT 407
Query: 332 SMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE 391
MI G + L++ M GI+ Y AL+ F + G + A +I +
Sbjct: 408 GMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRV 467
Query: 392 EFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKA 451
P + L+ + G +A ++ MI GH D ++ + K + +A
Sbjct: 468 GLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEA 527
Query: 452 LNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDM 511
+ + DG P ++ L++ G +A + +++++G P F SL
Sbjct: 528 EEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKG 587
Query: 512 YARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAAS 571
+ G ++A + L L A + + ++ + G L A + G M +
Sbjct: 588 LCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPD 647
Query: 572 ERLKVALIS 580
+LIS
Sbjct: 648 SYTYTSLIS 656
Score = 66.2 bits (160), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 87/429 (20%), Positives = 178/429 (41%), Gaps = 25/429 (5%)
Query: 164 KWTEVAEKIHERGEM----ILPEE---PKPITGKCKLITDKILSLEKEEDPSPLLAEWKE 216
K +A+ + GEM ILP+ I+G C+ I L +E AE +
Sbjct: 625 KSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKE------AEARG 678
Query: 217 LLQPSRIDWINLLDRLREQN---TQLYFK--VAELVLSEESFQTNVRDYSKLIDAHAKEN 271
+ P+++ + +D + + +YF+ + L + + TN +ID +++
Sbjct: 679 NVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNA-----MIDGYSRMG 733
Query: 272 CLEDAERILKKM-NENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVY 330
+E +L +M N+NG P++ T +L+H YSK ++ + + S+ +G PDK
Sbjct: 734 KIEKTNDLLPEMGNQNG-GPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTC 792
Query: 331 NSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRI 390
+S+++ + ++G+ ++ I G+E + L+ G++ A + +M
Sbjct: 793 HSLVLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWAFDLVKVMTS 852
Query: 391 EEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDK 450
++C +V + ++R M + G P+ R +I + +
Sbjct: 853 LGISLDKDTCDAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLINGLCRVGDIKT 912
Query: 451 ALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCD 510
A + E+ P + +V L + +EA LL + ++ P +L
Sbjct: 913 AFVVKEEMIAHKICPPNVAESAMVRALAKCGKADEATLLLRFMLKMKLVPTIASFTTLMH 972
Query: 511 MYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAA 570
+ + G +AL+ + ++ + +I GL A G + A ++ M+ GF A
Sbjct: 973 LCCKNGNVIEALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMALAFELYEEMKGDGFLA 1032
Query: 571 SERLKVALI 579
+ ALI
Sbjct: 1033 NATTYKALI 1041
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/283 (23%), Positives = 113/283 (39%), Gaps = 14/283 (4%)
Query: 284 NENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQP 343
N N V DI L+ +Y + G + + E F + +GF P N+++ + V +G+
Sbjct: 120 NSNPSVYDI-----LIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGED 174
Query: 344 KLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLL 403
S + M+ I + L+ G + + M + PT+ + +
Sbjct: 175 VSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTV 234
Query: 404 VEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM-IAAYGKKNLLDKALNLLLELEKDG 462
+ Y + G A D+M G D CT +M I + N + K LL ++ K
Sbjct: 235 LHWYCKKGRFKAAIELLDHMKSKGVDAD-VCTYNMLIHDLCRSNRIAKGYLLLRDMRKRM 293
Query: 463 FEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKAL 522
P TY L++ + A QLL ++ G +P +L D + G K+AL
Sbjct: 294 IHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEAL 353
Query: 523 QALGFLEAKKEQMGPDDFERIINGL-------LAGGFLQDAQR 558
+ +EAK + +++GL LA GF +R
Sbjct: 354 KMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKR 396
Score = 50.1 bits (118), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 74/159 (46%), Gaps = 2/159 (1%)
Query: 215 KELLQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCL 273
K+ + P +I L++ L R + + F V E +++ + NV + S ++ A AK
Sbjct: 887 KQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPNVAE-SAMVRALAKCGKA 945
Query: 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333
++A +L+ M + +VP I + T L+H+ K GN+ A E + + G + D YN +
Sbjct: 946 DEATLLLRFMLKMKLVPTIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYNVL 1005
Query: 334 IMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
I G L L + M G + Y AL+R
Sbjct: 1006 ITGLCAKGDMALAFELYEEMKGDGFLANATTYKALIRGL 1044
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/226 (20%), Positives = 98/226 (43%), Gaps = 12/226 (5%)
Query: 363 EIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDY 422
+Y L+R + + G ++ + +I +M + F P++ +C ++ + ++G+ S
Sbjct: 124 SVYDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWSFLKE 183
Query: 423 MIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQL 482
M++ PD +I + +K+ L+ ++EK G+ P TY ++ W +
Sbjct: 184 MLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGR 243
Query: 483 INEAEQLLGKISELG-EAPPFKIQVSLCDMYARAGIEKKALQALGFL---EAKKEQMGPD 538
A +LL + G +A + + D+ I K G+L + +K + P+
Sbjct: 244 FKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAK------GYLLLRDMRKRMIHPN 297
Query: 539 D--FERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQ 582
+ + +ING G + A ++ M + G + + ALI
Sbjct: 298 EVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGH 343
>sp|Q9LS25|PP420_ARATH Pentatricopeptide repeat-containing protein At5g46580,
chloroplastic OS=Arabidopsis thaliana GN=At5g46580 PE=2
SV=1
Length = 711
Score = 94.7 bits (234), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 82/363 (22%), Positives = 161/363 (44%), Gaps = 5/363 (1%)
Query: 220 PSRIDWINLLDRLRE-QNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAER 278
P+R + + +L+ LRE Q T +F V S+ F Y+ + + + E
Sbjct: 151 PNRDNALLVLNSLREWQKTHTFFN---WVKSKSLFPMETIFYNVTMKSLRFGRQFQLIEE 207
Query: 279 ILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYV 338
+ +M ++G+ D +T + ++ + ++A E FE + G PD+ Y++++ Y
Sbjct: 208 MALEMVKDGVELDNITYSTIITCAKRCNLYNKAIEWFERMYKTGLMPDEVTYSAILDVYS 267
Query: 339 NAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLE 398
+G+ + +SL + + +G + + L + F + GD G + M+ + +P +
Sbjct: 268 KSGKVEEVLSLYERAVATGWKPDAIAFSVLGKMFGEAGDYDGIRYVLQEMKSMDVKPNVV 327
Query: 399 SCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLEL 458
L+EA G+AG P ARS F+ M+ G P+++ +++ YGK AL L E+
Sbjct: 328 VYNTLLEAMGRAGKPGLARSLFNEMLEAGLTPNEKTLTALVKIYGKARWARDALQLWEEM 387
Query: 459 EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQ-VSLCDMYARAGI 517
+ + Y L++ + L EAE+L + E + P ++ ++Y G
Sbjct: 388 KAKKWPMDFILYNTLLNMCADIGLEEEAERLFNDMKESVQCRPDNFSYTAMLNIYGSGGK 447
Query: 518 EKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVA 577
+KA++ + Q+ ++ L + D V L +G +RL
Sbjct: 448 AEKAMELFEEMLKAGVQVNVMGCTCLVQCLGKAKRIDDVVYVFDLSIKRGVKPDDRLCGC 507
Query: 578 LIS 580
L+S
Sbjct: 508 LLS 510
Score = 63.2 bits (152), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 86/189 (45%), Gaps = 4/189 (2%)
Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
NV Y+ L++A + A + +M E G+ P+ T T LV +Y KA A + +
Sbjct: 325 NVVVYNTLLEAMGRAGKPGLARSLFNEMLEAGLTPNEKTLTALVKIYGKARWARDALQLW 384
Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEI-YLALLRSFAQ 374
E +++ + D +YN+++ + G + L + M S R + Y A+L +
Sbjct: 385 EEMKAKKWPMDFILYNTLLNMCADIGLEEEAERLFNDMKESVQCRPDNFSYTAMLNIYGS 444
Query: 375 CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR- 433
G A ++ M Q + CT LV+ G+A D FD I+ G KPDDR
Sbjct: 445 GGKAEKAMELFEEMLKAGVQVNVMGCTCLVQCLGKAKRIDDVVYVFDLSIKRGVKPDDRL 504
Query: 434 --CTASMIA 440
C S++A
Sbjct: 505 CGCLLSVMA 513
>sp|Q9SH26|PP102_ARATH Pentatricopeptide repeat-containing protein At1g63400
OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1
Length = 577
Score = 94.7 bits (234), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 78/310 (25%), Positives = 134/310 (43%), Gaps = 5/310 (1%)
Query: 194 ITDKILSLEKEEDPSPLLAEWKEL-LQPSRIDWINLLDRLREQNTQLYFKVAELV--LSE 250
+ D + E+D L E + ++P+ I + +L+ L N + + + L+ + E
Sbjct: 266 VIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCL--CNYERWSDASRLLSDMIE 323
Query: 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310
NV ++ LIDA KE L +AE++ +M + I PDI T + L++ + LD
Sbjct: 324 RKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDE 383
Query: 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370
AK FE + S P+ YN++I + A + G+ L M G+ + Y L+
Sbjct: 384 AKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIH 443
Query: 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
F Q D A + M + P + + L++ + G ++A F+Y+ R +P
Sbjct: 444 GFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEP 503
Query: 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490
MI K ++ +L L G +P Y ++ R L EA+ L
Sbjct: 504 TIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADALF 563
Query: 491 GKISELGEAP 500
K+ E G P
Sbjct: 564 RKMREDGPLP 573
Score = 75.9 bits (185), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 57/273 (20%), Positives = 122/273 (44%), Gaps = 1/273 (0%)
Query: 198 ILSLEKEEDPSPLLAEWKEL-LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTN 256
+ + E+ D S LL++ E + P+ + + L+D ++ + + + + S +
Sbjct: 305 LCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPD 364
Query: 257 VRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFE 316
+ YS LI+ + L++A+ + + M P++VT L++ + KA +D E F
Sbjct: 365 IFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFR 424
Query: 317 SLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376
+ G + Y ++I + A + M++ G+ + Y LL + G
Sbjct: 425 EMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNG 484
Query: 377 DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTA 436
+ A + ++ + +PT+ + +++E +AG + F + G KPD
Sbjct: 485 KLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYN 544
Query: 437 SMIAAYGKKNLLDKALNLLLELEKDGFEPGPAT 469
+MI+ + +K L ++A L ++ +DG P T
Sbjct: 545 TMISGFCRKGLKEEADALFRKMREDGPLPDSGT 577
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 65/303 (21%), Positives = 122/303 (40%), Gaps = 35/303 (11%)
Query: 254 QTNVRDYSKLIDAHAK--------------EN---------------CL------EDAER 278
+ NV YS +ID+ K EN CL DA R
Sbjct: 257 EANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASR 316
Query: 279 ILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYV 338
+L M E I P++VT L+ + K G L A++ ++ + PD Y+S+I +
Sbjct: 317 LLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFC 376
Query: 339 NAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLE 398
+ + ++MI+ + Y L+ F + + ++ M
Sbjct: 377 MHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTV 436
Query: 399 SCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLEL 458
+ T L+ + QA D D A+ F M+ G P+ +++ K L+KA+ + L
Sbjct: 437 TYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYL 496
Query: 459 EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIE 518
++ EP TY ++++ + + + + L +S G P I ++ + R G++
Sbjct: 497 QRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLK 556
Query: 519 KKA 521
++A
Sbjct: 557 EEA 559
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 79/362 (21%), Positives = 143/362 (39%), Gaps = 56/362 (15%)
Query: 207 PSPLLAEWKELLQP-SRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLID 265
P P + E+ +LL +++ +L+ L E+ +L N+ Y+ LI+
Sbjct: 81 PLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRL------------GISHNLYTYNILIN 128
Query: 266 AHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQP 325
+ + + A +L KM + G P IVT + L++ Y + A + + G++P
Sbjct: 129 CFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRP 188
Query: 326 DKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQIT 385
D + ++I + ++LVD M+ G + + Y ++ + GD+ A +
Sbjct: 189 DTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLL 248
Query: 386 NIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKK 445
N M + + V Y D + + H+
Sbjct: 249 NKMEAAKIEAN-------VVIYSTV---------IDSLCKYRHE---------------- 276
Query: 446 NLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQ 505
D ALNL E+E G P TY+ L+ L + ++A +LL + E P
Sbjct: 277 ---DDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTF 333
Query: 506 VSLCDMYARAG--IEKKALQALGFLEAKKEQMGPDDF--ERIINGLLAGGFLQDAQRVHG 561
+L D + + G +E + L + E K + PD F +ING L +A+ +
Sbjct: 334 NALIDAFVKEGKLVEAEKL----YDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFE 389
Query: 562 LM 563
LM
Sbjct: 390 LM 391
Score = 65.9 bits (159), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 53/251 (21%), Positives = 115/251 (45%), Gaps = 2/251 (0%)
Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
+ E ++ + ++ LI N +A ++ +M + G P++VT V+V+ K G+
Sbjct: 181 MVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGD 240
Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
+D A + + + + +Y+++I + ++L M G+ + Y +
Sbjct: 241 IDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSS 300
Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
L+ A ++ + M + P + + L++A+ + G +A +D MI+
Sbjct: 301 LISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRS 360
Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLL-LELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
PD +S+I + + LD+A ++ L + KD F P TY L++ + + I+E
Sbjct: 361 IDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCF-PNVVTYNTLINGFCKAKRIDEG 419
Query: 487 EQLLGKISELG 497
+L ++S+ G
Sbjct: 420 VELFREMSQRG 430
Score = 57.0 bits (136), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 61/309 (19%), Positives = 123/309 (39%)
Query: 252 SFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRA 311
+F + DY +++ L+DA + M ++ +P I L+ +K D
Sbjct: 45 AFSSGSGDYREILRNGLHSMKLDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLV 104
Query: 312 KEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRS 371
E ++ G + YN +I + Q L ++L+ M+ G E S +LL
Sbjct: 105 ISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNG 164
Query: 372 FAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD 431
+ + A + + M ++P + T L+ +A + D M++ G +P+
Sbjct: 165 YCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPN 224
Query: 432 DRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLG 491
++ K+ +D A NLL ++E E Y+ ++D L + + ++A L
Sbjct: 225 LVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFT 284
Query: 492 KISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGG 551
++ G P SL A + L + +K F +I+ + G
Sbjct: 285 EMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEG 344
Query: 552 FLQDAQRVH 560
L +A++++
Sbjct: 345 KLVEAEKLY 353
>sp|Q9CA58|PP120_ARATH Putative pentatricopeptide repeat-containing protein At1g74580
OS=Arabidopsis thaliana GN=At1g74580 PE=3 SV=1
Length = 763
Score = 94.7 bits (234), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 86/325 (26%), Positives = 143/325 (44%), Gaps = 14/325 (4%)
Query: 247 VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306
L E+ + +V Y+ LI K + ++AE L KM G+ PD T L+ Y K G
Sbjct: 276 CLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGG 335
Query: 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
+ A+ +GF PD+ Y S+I + G+ ++L + + GI+ + +Y
Sbjct: 336 MVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYN 395
Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
L++ + G + A Q+ N M + P +++ +LV + G A MI
Sbjct: 396 TLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISK 455
Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
G+ PD +I Y + ++ AL +L + +G +P TY L++ L + +
Sbjct: 456 GYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDV 515
Query: 487 EQLLGKISELGEAP---PFKIQV-SLCDMYARAGIEKKALQALGFL-EAKKEQMGPD--D 539
+ + E G AP F I + SLC +K +ALG L E K + + PD
Sbjct: 516 METYKTMVEKGCAPNLFTFNILLESLCRY-------RKLDEALGLLEEMKNKSVNPDAVT 568
Query: 540 FERIINGLLAGGFLQDAQRVHGLME 564
F +I+G G L A + ME
Sbjct: 569 FGTLIDGFCKNGDLDGAYTLFRKME 593
Score = 77.4 bits (189), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 75/316 (23%), Positives = 136/316 (43%), Gaps = 12/316 (3%)
Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELV--LSEESFQTNVRDYSKLIDAHAKENCLED 275
++P+ I + L+ L Q L + A+L +SE+ V+ ++ L++ K C+ D
Sbjct: 387 IKPNVILYNTLIKGLSNQGMIL--EAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSD 444
Query: 276 AERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335
A+ ++K M G PDI T +L+H YS ++ A E + + +G PD YNS++
Sbjct: 445 ADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLN 504
Query: 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP 395
+ + M M+ G + + LL S + + A + M+ + P
Sbjct: 505 GLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNP 564
Query: 396 TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIA-AYGKKNLLDKALNL 454
+ L++ + + GD D A + F M T ++I A+ +K + A L
Sbjct: 565 DAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKL 624
Query: 455 LLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPF----KIQVSLC- 509
E+ P TY ++VD + +N + L ++ E G P ++ LC
Sbjct: 625 FQEMVDRCLGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMMENGFIPSLTTLGRVINCLCV 684
Query: 510 --DMYARAGIEKKALQ 523
+Y AGI + +Q
Sbjct: 685 EDRVYEAAGIIHRMVQ 700
Score = 76.6 bits (187), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 69/314 (21%), Positives = 129/314 (41%), Gaps = 4/314 (1%)
Query: 257 VRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFE 316
V Y+ ++ + A ++ +M + GI PD+ + T+ + + K A
Sbjct: 111 VFSYNAIMSVLVDSGYFDQAHKVYMRMRDRGITPDVYSFTIRMKSFCKTSRPHAALRLLN 170
Query: 317 SLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376
++ S G + + Y +++ + G L M+ SG+ + LLR + G
Sbjct: 171 NMSSQGCEMNVVAYCTVVGGFYEENFKAEGYELFGKMLASGVSLCLSTFNKLLRVLCKKG 230
Query: 377 DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTA 436
DV+ ++ + + P L + L ++ Q G+ D A +I G KPD
Sbjct: 231 DVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVITYN 290
Query: 437 SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496
++I K + +A L ++ +G EP TY L+ + ++ AE+++G
Sbjct: 291 NLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFN 350
Query: 497 GEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLAGGFLQ 554
G P SL D G +AL F EA + + P+ + +I GL G +
Sbjct: 351 GFVPDQFTYRSLIDGLCHEGETNRALAL--FNEALGKGIKPNVILYNTLIKGLSNQGMIL 408
Query: 555 DAQRVHGLMEAQGF 568
+A ++ M +G
Sbjct: 409 EAAQLANEMSEKGL 422
Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/321 (19%), Positives = 123/321 (38%), Gaps = 37/321 (11%)
Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
Y + + ++ +++A + ++M+ P + + ++ + +G D+A + + +R
Sbjct: 79 YVGAMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMR 138
Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
G PD + + ++ +P + L++ M + G E + Y ++ F + + +
Sbjct: 139 DRGITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYE-ENFK 197
Query: 380 GAG-QITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
G ++ M L + L+ + GD + D +I+ G P+
Sbjct: 198 AEGYELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLF 257
Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498
I ++ LD A+ ++ L + G +P TY L+ L + EAE LGK+ G
Sbjct: 258 IQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGL 317
Query: 499 APPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQR 558
P D Y + +I G GG +Q A+R
Sbjct: 318 EP---------DSYT--------------------------YNTLIAGYCKGGMVQLAER 342
Query: 559 VHGLMEAQGFAASERLKVALI 579
+ G GF + +LI
Sbjct: 343 IVGDAVFNGFVPDQFTYRSLI 363
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/263 (24%), Positives = 105/263 (39%), Gaps = 8/263 (3%)
Query: 310 RAKEAFESLRSH-GFQPDKKVYNSMI--MAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
+A E F S+R GF+ Y S+I + Y + + LVDM G E +Y+
Sbjct: 22 KALEMFNSMRKEVGFKHTLSTYRSVIEKLGYYGKFEA-MEEVLVDMRENVGNHMLEGVYV 80
Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
++++ + G V+ A + M + +PT+ S ++ +G DQA + M
Sbjct: 81 GAMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDR 140
Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486
G PD + ++ K + AL LL + G E Y +V E
Sbjct: 141 GITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKAEG 200
Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFER--II 544
+L GK+ G + L + + G K+ + L + K + P+ F I
Sbjct: 201 YELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLD--KVIKRGVLPNLFTYNLFI 258
Query: 545 NGLLAGGFLQDAQRVHGLMEAQG 567
GL G L A R+ G + QG
Sbjct: 259 QGLCQRGELDGAVRMVGCLIEQG 281
>sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700,
mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3
SV=1
Length = 602
Score = 94.4 bits (233), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 79/344 (22%), Positives = 144/344 (41%), Gaps = 5/344 (1%)
Query: 242 KVAELV-----LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTST 296
KV+E V + E Q +V Y+ +++ + A +L+KM E + D+ T +
Sbjct: 173 KVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYS 232
Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
++ + G +D A F+ + + G + YNS++ AG+ G L+ M++
Sbjct: 233 TIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSR 292
Query: 357 GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA 416
I + + LL F + G ++ A ++ M P + + L++ Y +A
Sbjct: 293 EIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEA 352
Query: 417 RSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDW 476
+ D M+R PD S+I Y +D + + + K G TY++LV
Sbjct: 353 NNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQG 412
Query: 477 LGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG 536
+ I AE+L ++ G P L D G +KAL+ L+ K +G
Sbjct: 413 FCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLG 472
Query: 537 PDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALIS 580
+ II G+ GG ++DA + + +G + +IS
Sbjct: 473 IVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMIS 516
Score = 81.6 bits (200), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 117/263 (44%), Gaps = 12/263 (4%)
Query: 218 LQPSRIDWINLLD------RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKEN 271
+ P+ I + LLD +L+E N +LY E++ N+ Y+ L+D + +N
Sbjct: 294 IVPNVITFNVLLDVFVKEGKLQEAN-ELY---KEMI--TRGISPNIITYNTLMDGYCMQN 347
Query: 272 CLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYN 331
L +A +L M N PDIVT T L+ Y +D + F ++ G + Y+
Sbjct: 348 RLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYS 407
Query: 332 SMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE 391
++ + +G+ KL L M++ G+ Y LL G + A +I ++
Sbjct: 408 ILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKS 467
Query: 392 EFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKA 451
+ + T ++E + G + A + F + G KP+ MI+ KK L +A
Sbjct: 468 KMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEA 527
Query: 452 LNLLLELEKDGFEPGPATYTVLV 474
LL ++E+DG P TY L+
Sbjct: 528 NILLRKMEEDGNAPNDCTYNTLI 550
Score = 63.9 bits (154), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 72/338 (21%), Positives = 133/338 (39%), Gaps = 24/338 (7%)
Query: 259 DYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESL 318
D+S+ A A+ K++ NGI +I T ++++ + + A +
Sbjct: 90 DFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKV 149
Query: 319 RSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378
G++PD +N++I G+ + LVD M+ +G + Y +++ + GD
Sbjct: 150 MKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDT 209
Query: 379 RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438
A + M + + + + ++++ + G D A S F M G K S+
Sbjct: 210 SLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSL 269
Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL---GRLQLINEAEQLLGKISE 495
+ K + LL ++ P T+ VL+D G+LQ EA +L ++
Sbjct: 270 VRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQ---EANELYKEMIT 326
Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFL 553
G +P +L D Y +A L + + + PD F +I G +
Sbjct: 327 RGISPNIITYNTLMDGYCMQNRLSEANNMLDLMV--RNKCSPDIVTFTSLIKGYCMVKRV 384
Query: 554 QDAQRV------HGLME--------AQGFAASERLKVA 577
D +V GL+ QGF S ++K+A
Sbjct: 385 DDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLA 422
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/230 (18%), Positives = 96/230 (41%), Gaps = 35/230 (15%)
Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
+S+ N YS L+ + ++ AE + ++M +G++PD++T +L+ G
Sbjct: 394 ISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGK 453
Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
L++A E FE L+ + K+ + +V +Y
Sbjct: 454 LEKALEIFEDLQ----------------------KSKMDLGIV-------------MYTT 478
Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
++ + G V A + + + +P + + T+++ + G +A M G
Sbjct: 479 IIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDG 538
Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
+ P+D ++I A+ + L + L+ E++ GF ++ +++D L
Sbjct: 539 NAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDML 588
>sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620
OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1
Length = 621
Score = 94.0 bits (232), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 82/320 (25%), Positives = 134/320 (41%), Gaps = 5/320 (1%)
Query: 242 KVAELVL-----SEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTST 296
KV++ VL E FQ N Y ++ K A +L+KM E I D V +
Sbjct: 192 KVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYS 251
Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
+++ K G+LD A F + GF+ D +Y ++I + AG+ G L+ MI
Sbjct: 252 IIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKR 311
Query: 357 GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA 416
I + AL+ F + G +R A ++ M P + T L++ + + D+A
Sbjct: 312 KITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKA 371
Query: 417 RSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDW 476
D M+ G P+ R +I Y K NL+D L L ++ G TY L+
Sbjct: 372 NHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQG 431
Query: 477 LGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG 536
L + A++L ++ P L D G +KAL+ +E K ++
Sbjct: 432 FCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELD 491
Query: 537 PDDFERIINGLLAGGFLQDA 556
+ II+G+ + DA
Sbjct: 492 IGIYNIIIHGMCNASKVDDA 511
Score = 85.5 bits (210), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/275 (24%), Positives = 135/275 (49%), Gaps = 10/275 (3%)
Query: 215 KELLQ----PSRIDWINLLDRLREQNTQL--YFKVAELVLSEESFQTNVRDYSKLIDAHA 268
KE++Q P + + +L+D ++N QL + +L++S+ N+R ++ LI+ +
Sbjct: 341 KEMIQRGISPDTVTYTSLIDGFCKEN-QLDKANHMLDLMVSK-GCGPNIRTFNILINGYC 398
Query: 269 KENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKK 328
K N ++D + +KM+ G+V D VT L+ + + G L+ AKE F+ + S +PD
Sbjct: 399 KANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIV 458
Query: 329 VYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIM 388
Y ++ + G+P+ + + + + S +E IY ++ V A + +
Sbjct: 459 SYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSL 518
Query: 389 RIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLL 448
++ +P +++ +++ + G +A F M GH P+ +I A+ +
Sbjct: 519 PLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDA 578
Query: 449 DKALNLLLELEKDGFEPGPATYTVLVDWL--GRLQ 481
K+ L+ E+++ GF +T ++VD L GRL+
Sbjct: 579 TKSAKLIEEIKRCGFSVDASTVKMVVDMLSDGRLK 613
Score = 79.0 bits (193), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/305 (22%), Positives = 128/305 (41%)
Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
++ + +S LI+ E + +A ++ +M E G P ++T LV+ G + A
Sbjct: 138 YEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAV 197
Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
+ + GFQP++ Y ++ +GQ L M L+ M I+ Y ++
Sbjct: 198 LLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGL 257
Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
+ G + A + N M I+ F+ + T L+ + AG D MI+ PD
Sbjct: 258 CKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDV 317
Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
+++I + K+ L +A L E+ + G P TYT L+D + +++A +L
Sbjct: 318 VAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDL 377
Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGF 552
+ G P + L + Y +A + L+ + + + +I G G
Sbjct: 378 MVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGK 437
Query: 553 LQDAQ 557
L+ A+
Sbjct: 438 LEVAK 442
Score = 73.2 bits (178), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 83/375 (22%), Positives = 159/375 (42%), Gaps = 13/375 (3%)
Query: 203 KEEDPSPLLAEW-KELLQPSRIDWINLLDRLREQNTQLYFKVAELV--LSEESFQTNVRD 259
KE+D L E + +P ID+ L + T+ Y V +L + + N+
Sbjct: 52 KEDDAVDLFQEMTRSRPRPRLIDFSRLFSVV--ARTKQYDLVLDLCKQMELKGIAHNLYT 109
Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
S +I+ + L A + K+ + G PD VT + L++ G + A E + +
Sbjct: 110 LSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMV 169
Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
G +P N+++ G+ + L+D M+ +G + +E Y +L+ + G
Sbjct: 170 EMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTA 229
Query: 380 GAGQITNIMRIEEFQPTLESC--TLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTAS 437
A ++ + ++EE + L++ +++++ + G D A + F+ M G K D +
Sbjct: 230 LAMEL--LRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTT 287
Query: 438 MIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497
+I + D LL ++ K P ++ L+D + + EAE+L ++ + G
Sbjct: 288 LIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRG 347
Query: 498 EAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQD 555
+P SL D + + KA L + +K GP+ F +ING + D
Sbjct: 348 ISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSK--GCGPNIRTFNILINGYCKANLIDD 405
Query: 556 AQRVHGLMEAQGFAA 570
+ M +G A
Sbjct: 406 GLELFRKMSLRGVVA 420
Score = 50.4 bits (119), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 88/192 (45%)
Query: 388 MRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNL 447
M ++ L + ++++ + A S +I+LG++PD +++I +
Sbjct: 98 MELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGR 157
Query: 448 LDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVS 507
+ +AL L+ + + G +P T LV+ L +++A L+ ++ E G P
Sbjct: 158 VSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGP 217
Query: 508 LCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQG 567
+ + ++G A++ L +E +K ++ + II+GL G L +A + ME +G
Sbjct: 218 VLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKG 277
Query: 568 FAASERLKVALI 579
F A + LI
Sbjct: 278 FKADIIIYTTLI 289
>sp|Q9FMQ1|PP376_ARATH Pentatricopeptide repeat-containing protein At5g12100,
mitochondrial OS=Arabidopsis thaliana GN=At5g12100 PE=2
SV=1
Length = 816
Score = 94.0 bits (232), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 87/374 (23%), Positives = 165/374 (44%), Gaps = 4/374 (1%)
Query: 218 LQPSRIDWINLLD-RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276
L PS I + L+D + N + FKV E + + + ++ ++ L+ K +EDA
Sbjct: 245 LLPSLITYNTLIDGYCKAGNPEKSFKVRER-MKADHIEPSLITFNTLLKGLFKAGMVEDA 303
Query: 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336
E +LK+M + G VPD T ++L YS + A +E+ G + + + ++ A
Sbjct: 304 ENVLKEMKDLGFVPDAFTFSILFDGYSSNEKAEAALGVYETAVDSGVKMNAYTCSILLNA 363
Query: 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT 396
G+ + ++ + G+ +E IY ++ + + GD+ GA M + +P
Sbjct: 364 LCKEGKIEKAEEILGREMAKGLVPNEVIYNTMIDGYCRKGDLVGARMKIEAMEKQGMKPD 423
Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
+ L+ + + G+ + A + M G P +I YG+K DK ++L
Sbjct: 424 HLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVETYNILIGGYGRKYEFDKCFDILK 483
Query: 457 ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
E+E +G P +Y L++ L + + EA+ + + + G +P +I L D G
Sbjct: 484 EMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPKVRIYNMLIDGCCSKG 543
Query: 517 IEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKV 576
+ A + + K ++ + +I+GL G L +A+ + + +G
Sbjct: 544 KIEDAFRFSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKGLKPDVFTYN 603
Query: 577 ALISSQTF--NRQR 588
+LIS F N QR
Sbjct: 604 SLISGYGFAGNVQR 617
Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 90/406 (22%), Positives = 151/406 (37%), Gaps = 37/406 (9%)
Query: 210 LLAEWKELLQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHA 268
A E + PS LLD L + + ++ V +L E F+ + Y K I A
Sbjct: 132 FFALRNEGIYPSSDSLTLLLDHLVKTKQFRVTINVFLNIL-ESDFRPSKFMYGKAIQAAV 190
Query: 269 KENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKK 328
K + + + +M + I P + VL+ K ++ A++ F+ + + P
Sbjct: 191 KLSDVGKGLELFNRMKHDRIYPSVFIYNVLIDGLCKGKRMNDAEQLFDEMLARRLLPSLI 250
Query: 329 VYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIM 388
YN++I Y AG P+ + + M IE S + LL+ + G V A + M
Sbjct: 251 TYNTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLLKGLFKAGMVEDAENVLKEM 310
Query: 389 RIEEFQP-----------------------------------TLESCTLLVEAYGQAGDP 413
+ F P +C++L+ A + G
Sbjct: 311 KDLGFVPDAFTFSILFDGYSSNEKAEAALGVYETAVDSGVKMNAYTCSILLNALCKEGKI 370
Query: 414 DQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVL 473
++A + G P++ +MI Y +K L A + +EK G +P Y L
Sbjct: 371 EKAEEILGREMAKGLVPNEVIYNTMIDGYCRKGDLVGARMKIEAMEKQGMKPDHLAYNCL 430
Query: 474 VDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKE 533
+ L + AE+ + K+ G +P + L Y R K L +E
Sbjct: 431 IRRFCELGEMENAEKEVNKMKLKGVSPSVETYNILIGGYGRKYEFDKCFDILKEMEDNGT 490
Query: 534 QMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
+ +IN L G L +AQ V ME +G + R+ LI
Sbjct: 491 MPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPKVRIYNMLI 536
Score = 68.9 bits (167), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/258 (25%), Positives = 115/258 (44%), Gaps = 10/258 (3%)
Query: 220 PSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERI 279
P+ + + L++ L + + L ++ + + + VR Y+ LID + +EDA R
Sbjct: 492 PNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPKVRIYNMLIDGCCSKGKIEDAFRF 551
Query: 280 LKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVN 339
K+M + GI ++VT L+ S G L A++ + G +PD YNS+I Y
Sbjct: 552 SKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKGLKPDVFTYNSLISGYGF 611
Query: 340 AGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG---DVRGAGQITNIMRIEEFQPT 396
AG + ++L + M SGI+ + + Y L+ + G R G+++ +P
Sbjct: 612 AGNVQRCIALYEEMKRSGIKPTLKTYHLLISLCTKEGIELTERLFGEMS-------LKPD 664
Query: 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456
L ++ Y GD ++A + MI D S+I K L + +L+
Sbjct: 665 LLVYNGVLHCYAVHGDMEKAFNLQKQMIEKSIGLDKTTYNSLILGQLKVGKLCEVRSLID 724
Query: 457 ELEKDGFEPGPATYTVLV 474
E+ EP TY ++V
Sbjct: 725 EMNAREMEPEADTYNIIV 742
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 80/175 (45%)
Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
+V Y+ LI + ++ + ILK+M +NG +P++V+ L++ K L A+
Sbjct: 458 SVETYNILIGGYGRKYEFDKCFDILKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVK 517
Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
+ G P ++YN +I + G+ + M+ GIE + Y L+ +
Sbjct: 518 RDMEDRGVSPKVRIYNMLIDGCCSKGKIEDAFRFSKEMLKKGIELNLVTYNTLIDGLSMT 577
Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430
G + A + + + +P + + L+ YG AG+ + + ++ M R G KP
Sbjct: 578 GKLSEAEDLLLEISRKGLKPDVFTYNSLISGYGFAGNVQRCIALYEEMKRSGIKP 632
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 70/299 (23%), Positives = 122/299 (40%), Gaps = 8/299 (2%)
Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
+ +A + + GI P + T+L+ K F ++ F+P K +Y
Sbjct: 125 ISEAADLFFALRNEGIYPSSDSLTLLLDHLVKTKQFRVTINVFLNILESDFRPSKFMYGK 184
Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
I A V G+ L + M I S IY L+ + + A Q+ + M
Sbjct: 185 AIQAAVKLSDVGKGLELFNRMKHDRIYPSVFIYNVLIDGLCKGKRMNDAEQLFDEMLARR 244
Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
P+L + L++ Y +AG+P+++ + M +P +++ K +++ A
Sbjct: 245 LLPSLITYNTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLLKGLFKAGMVEDAE 304
Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
N+L E++ GF P T+++L D + +AE LG + E K+ C +
Sbjct: 305 NVLKEMKDLGFVPDAFTFSILFDGYSSNE---KAEAALG-VYETAVDSGVKMNAYTCSIL 360
Query: 513 ARA----GIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQG 567
A G +KA + LG AK + +I+G G L A+ ME QG
Sbjct: 361 LNALCKEGKIEKAEEILGREMAKGLVPNEVIYNTMIDGYCRKGDLVGARMKIEAMEKQG 419
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/275 (20%), Positives = 119/275 (43%), Gaps = 6/275 (2%)
Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
+ A + F +LR+ G P ++ V Q ++ +++ ++ S S+ +Y
Sbjct: 125 ISEAADLFFALRNEGIYPSSDSLTLLLDHLVKTKQFRVTINVFLNILESDFRPSKFMYGK 184
Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
+++ + DV ++ N M+ + P++ +L++ + + A FD M+
Sbjct: 185 AIQAAVKLSDVGKGLELFNRMKHDRIYPSVFIYNVLIDGLCKGKRMNDAEQLFDEMLARR 244
Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
P ++I Y K +K+ + ++ D EP T+ L+ L + ++ +AE
Sbjct: 245 LLPSLITYNTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLLKGLFKAGMVEDAE 304
Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKE---QMGPDDFERII 544
+L ++ +LG P L D Y+ +KA ALG E + +M ++
Sbjct: 305 NVLKEMKDLGFVPDAFTFSILFDGYSS---NEKAEAALGVYETAVDSGVKMNAYTCSILL 361
Query: 545 NGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579
N L G ++ A+ + G A+G +E + +I
Sbjct: 362 NALCKEGKIEKAEEILGREMAKGLVPNEVIYNTMI 396
>sp|O64705|PP184_ARATH Pentatricopeptide repeat-containing protein At2g34400
OS=Arabidopsis thaliana GN=PCMP-E23 PE=3 SV=2
Length = 621
Score = 94.0 bits (232), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 66/247 (26%), Positives = 110/247 (44%), Gaps = 8/247 (3%)
Query: 287 GIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLG 346
G+ D+ + L+ MY+K G + A++ F+ + + D +NSMI Y AG K
Sbjct: 162 GLERDVHINHSLIMMYAKCGQVGYARKLFDEIT----ERDTVSWNSMISGYSEAGYAKDA 217
Query: 347 MSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEA 406
M L M G E E +++L + + GD+R + + ++ + + L+
Sbjct: 218 MDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIGLSTFLGSKLISM 277
Query: 407 YGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPG 466
YG+ GD D AR F+ MI K D +MI Y + +A L E+EK G P
Sbjct: 278 YGKCGDLDSARRVFNQMI----KKDRVAWTAMITVYSQNGKSSEAFKLFFEMEKTGVSPD 333
Query: 467 PATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALG 526
T + ++ G + + +Q+ SEL + L DMY + G ++AL+
Sbjct: 334 AGTLSTVLSACGSVGALELGKQIETHASELSLQHNIYVATGLVDMYGKCGRVEEALRVFE 393
Query: 527 FLEAKKE 533
+ K E
Sbjct: 394 AMPVKNE 400
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/286 (21%), Positives = 136/286 (47%), Gaps = 29/286 (10%)
Query: 214 WKELLQPSRIDWINLLDRLREQN------TQLYFKVAELVLSEESFQTNVRDYSKLIDAH 267
+ ++++ R+ W ++ + QN +L+F++ + +S ++ S ++ A
Sbjct: 291 FNQMIKKDRVAWTAMIT-VYSQNGKSSEAFKLFFEMEKTGVSPDA-----GTLSTVLSAC 344
Query: 268 AKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDK 327
LE ++I +E + +I +T LV MY K G ++ A FE++ ++
Sbjct: 345 GSVGALELGKQIETHASELSLQHNIYVATGLVDMYGKCGRVEEALRVFEAMPV----KNE 400
Query: 328 KVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV-RGAGQITN 386
+N+MI AY + G K + L D M + S+ ++ +L + G V +G
Sbjct: 401 ATWNAMITAYAHQGHAKEALLLFDRM---SVPPSDITFIGVLSACVHAGLVHQGCRYFHE 457
Query: 387 IMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKN 446
+ + P +E T +++ +AG D+A +++M R KPD+ A+++ A K+
Sbjct: 458 MSSMFGLVPKIEHYTNIIDLLSRAGMLDEA---WEFMERFPGKPDEIMLAAILGACHKRK 514
Query: 447 ---LLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489
+ +KA+ +L+E+++ Y + + L +++ +E+ ++
Sbjct: 515 DVAIREKAMRMLMEMKE---AKNAGNYVISSNVLADMKMWDESAKM 557
Score = 38.9 bits (89), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 71/167 (42%), Gaps = 26/167 (15%)
Query: 419 NFDYMIR-LGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
+F+YMIR L + +D + AL+L ++ G +P TY +
Sbjct: 98 SFNYMIRGLTNTWNDH---------------EAALSLYRRMKFSGLKPDKFTYNFVFIAC 142
Query: 478 GRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGP 537
+L+ I + + ++G I SL MYA+ G +G+ +++
Sbjct: 143 AKLEEIGVGRSVHSSLFKVGLERDVHINHSLIMMYAKCG-------QVGYARKLFDEITE 195
Query: 538 DD---FERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581
D + +I+G G+ +DA + ME +GF ER V+++ +
Sbjct: 196 RDTVSWNSMISGYSEAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGA 242
>sp|Q0WMY5|PP365_ARATH Pentatricopeptide repeat-containing protein At5g04810,
chloroplastic OS=Arabidopsis thaliana GN=PPR4 PE=1 SV=1
Length = 952
Score = 94.0 bits (232), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 79/371 (21%), Positives = 159/371 (42%), Gaps = 47/371 (12%)
Query: 238 QLYFKVAEL--------VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIV 289
LY KV ++ V+ EE + N++ YS +I+ K +A + + M + G+
Sbjct: 492 NLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDMVKEGMK 551
Query: 290 PDIV-----------------------------------TSTVLVHMYSKAGNLDRAKEA 314
PD++ T ++H Y+K+G++ R+ E
Sbjct: 552 PDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSGDMRRSLEV 611
Query: 315 FESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ 374
F+ +R G P +N +I V Q + + ++D M +G+ +E Y +++ +A
Sbjct: 612 FDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYAS 671
Query: 375 CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC 434
GD A + ++ E + + L++A ++G A + M +
Sbjct: 672 VGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRNSFV 731
Query: 435 TASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494
+I + ++ + +A +L+ +++K+G +P TYT + + +N A Q + ++
Sbjct: 732 YNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEME 791
Query: 495 ELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLAGGF 552
LG P K +L +ARA + +KAL + E K + PD + ++ LL+
Sbjct: 792 ALGVKPNIKTYTTLIKGWARASLPEKALSC--YEEMKAMGIKPDKAVYHCLLTSLLSRAS 849
Query: 553 LQDAQRVHGLM 563
+ +A G+M
Sbjct: 850 IAEAYIYSGVM 860
Score = 89.0 bits (219), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/311 (21%), Positives = 132/311 (42%)
Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
N Y K+I AH + +E AE ++++M E GI I ++ Y+ + + F
Sbjct: 413 NASIYGKIIYAHCQTCNMERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEKKGLVVF 472
Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
+ L+ GF P Y +I Y G+ + + +M G++ + + Y ++ F +
Sbjct: 473 KRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKL 532
Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
D A + M E +P + ++ A+ G+ D+A M +L H+P R
Sbjct: 533 KDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTF 592
Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
+I Y K + ++L + + + G P T+ L++ L + + +A ++L +++
Sbjct: 593 MPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTL 652
Query: 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQD 555
G + + YA G KA + L+ + + +E ++ G +Q
Sbjct: 653 AGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCKSGRMQS 712
Query: 556 AQRVHGLMEAQ 566
A V M A+
Sbjct: 713 ALAVTKEMSAR 723
Score = 81.6 bits (200), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/372 (20%), Positives = 163/372 (43%), Gaps = 16/372 (4%)
Query: 210 LLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQ--------TNVRDYS 261
+++ ++++ +PSR ++ ++ + Y + ++ + E+F+ R Y+
Sbjct: 297 VISAFEKISKPSRTEFGLMV--------KFYGRRGDMHRARETFERMRARGITPTSRIYT 348
Query: 262 KLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSH 321
LI A+A +++A ++KM E GI +VT +V+V +SKAG+ + A F+ +
Sbjct: 349 SLIHAYAVGRDMDEALSCVRKMKEEGIEMSLVTYSVIVGGFSKAGHAEAADYWFDEAKRI 408
Query: 322 GFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGA 381
+ +Y +I A+ + +LV M GI+ IY ++ + D +
Sbjct: 409 HKTLNASIYGKIIYAHCQTCNMERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEKKG 468
Query: 382 GQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAA 441
+ ++ F PT+ + L+ Y + G +A M G K + + + MI
Sbjct: 469 LVVFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMING 528
Query: 442 YGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPP 501
+ K A + ++ K+G +P Y ++ + ++ A Q + ++ +L P
Sbjct: 529 FVKLKDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPT 588
Query: 502 FKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHG 561
+ + + YA++G +++L+ + F +INGL+ ++ A +
Sbjct: 589 TRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILD 648
Query: 562 LMEAQGFAASER 573
M G +A+E
Sbjct: 649 EMTLAGVSANEH 660
Score = 72.4 bits (176), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 78/159 (49%), Gaps = 9/159 (5%)
Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
+S + N Y+ LID A+ + +A ++++M + G+ PDI T T + SKAG+
Sbjct: 720 MSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGD 779
Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
++RA + E + + G +P+ K Y ++I + A P+ +S + M GI+ + +Y
Sbjct: 780 MNRATQTIEEMEALGVKPNIKTYTTLIKGWARASLPEKALSCYEEMKAMGIKPDKAVYHC 839
Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEA 406
LL S + A + +M I C +VEA
Sbjct: 840 LLTSLLSRASIAEAYIYSGVMTI---------CKEMVEA 869
Score = 69.7 bits (169), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 65/326 (19%), Positives = 124/326 (38%), Gaps = 35/326 (10%)
Query: 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356
++V Y + G++ RA+E FE +R+ G P ++Y S+I AY +S V M
Sbjct: 314 LMVKFYGRRGDMHRARETFERMRARGITPTSRIYTSLIHAYAVGRDMDEALSCVRKMKEE 373
Query: 357 GIERSEEIYLALLRSFAQCGDVRGAG--------------------------QITNIMRI 390
GIE S Y ++ F++ G A Q N+ R
Sbjct: 374 GIEMSLVTYSVIVGGFSKAGHAEAADYWFDEAKRIHKTLNASIYGKIIYAHCQTCNMERA 433
Query: 391 EEFQPTLES---------CTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAA 441
E +E +++ Y D + F + G P +I
Sbjct: 434 EALVREMEEEGIDAPIAIYHTMMDGYTMVADEKKGLVVFKRLKECGFTPTVVTYGCLINL 493
Query: 442 YGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPP 501
Y K + KAL + ++++G + TY+++++ +L+ A + + + G P
Sbjct: 494 YTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDMVKEGMKPD 553
Query: 502 FKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHG 561
+ ++ + G +A+Q + ++ + + F II+G G ++ + V
Sbjct: 554 VILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSGDMRRSLEVFD 613
Query: 562 LMEAQGFAASERLKVALISSQTFNRQ 587
+M G + LI+ RQ
Sbjct: 614 MMRRCGCVPTVHTFNGLINGLVEKRQ 639
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.134 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 218,102,308
Number of Sequences: 539616
Number of extensions: 9380902
Number of successful extensions: 37416
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 209
Number of HSP's that attempted gapping in prelim test: 31438
Number of HSP's gapped (non-prelim): 2854
length of query: 592
length of database: 191,569,459
effective HSP length: 123
effective length of query: 469
effective length of database: 125,196,691
effective search space: 58717248079
effective search space used: 58717248079
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)