Query 007695
Match_columns 592
No_of_seqs 596 out of 2799
Neff 9.2
Searched_HMMs 46136
Date Thu Mar 28 14:05:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007695.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007695hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 3.3E-56 7.1E-61 506.7 53.8 412 169-582 383-799 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 1.2E-53 2.6E-58 485.8 53.8 389 190-583 369-765 (1060)
3 PLN03077 Protein ECB2; Provisi 100.0 5.9E-52 1.3E-56 477.9 36.4 375 194-583 224-600 (857)
4 PLN03081 pentatricopeptide (PP 100.0 1.2E-49 2.6E-54 448.5 40.1 372 186-572 153-527 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 2.4E-49 5.3E-54 456.2 39.2 379 194-586 123-504 (857)
6 PLN03081 pentatricopeptide (PP 100.0 1E-48 2.2E-53 440.9 40.0 396 157-571 153-562 (697)
7 TIGR02917 PEP_TPR_lipo putativ 99.9 2.1E-20 4.5E-25 217.2 49.5 363 197-572 504-871 (899)
8 TIGR02917 PEP_TPR_lipo putativ 99.9 1.3E-20 2.9E-25 218.8 46.2 381 170-564 513-898 (899)
9 PRK11788 tetratricopeptide rep 99.9 5.2E-19 1.1E-23 186.3 37.1 303 264-573 42-354 (389)
10 PRK11788 tetratricopeptide rep 99.9 2.5E-18 5.5E-23 181.1 37.8 298 233-538 47-354 (389)
11 PRK15174 Vi polysaccharide exp 99.8 2.5E-15 5.4E-20 167.5 44.4 330 194-532 45-382 (656)
12 TIGR00990 3a0801s09 mitochondr 99.8 1.7E-14 3.6E-19 160.9 48.7 357 203-566 139-571 (615)
13 PRK15174 Vi polysaccharide exp 99.8 8.6E-15 1.9E-19 163.2 44.0 326 231-566 52-381 (656)
14 PRK11447 cellulose synthase su 99.8 1.3E-14 2.9E-19 172.2 45.7 387 169-570 282-745 (1157)
15 KOG4626 O-linked N-acetylgluco 99.7 4.1E-15 8.9E-20 152.3 31.7 370 187-572 111-489 (966)
16 PRK11447 cellulose synthase su 99.7 6.6E-14 1.4E-18 166.3 46.9 357 203-566 281-700 (1157)
17 KOG4626 O-linked N-acetylgluco 99.7 1.2E-14 2.6E-19 149.0 28.6 362 169-547 129-500 (966)
18 PRK10049 pgaA outer membrane p 99.7 1.2E-12 2.7E-17 148.9 48.4 394 165-572 21-460 (765)
19 TIGR00990 3a0801s09 mitochondr 99.7 1.5E-12 3.2E-17 145.3 46.9 330 233-572 139-541 (615)
20 KOG4422 Uncharacterized conser 99.7 3.3E-12 7.2E-17 126.2 37.4 347 217-570 202-594 (625)
21 PRK14574 hmsH outer membrane p 99.6 3.3E-12 7.2E-17 143.4 42.2 391 170-572 48-517 (822)
22 KOG4422 Uncharacterized conser 99.6 8.4E-12 1.8E-16 123.4 37.0 311 253-569 203-554 (625)
23 PRK14574 hmsH outer membrane p 99.6 3.2E-11 6.9E-16 135.6 45.7 367 196-572 39-483 (822)
24 PRK10049 pgaA outer membrane p 99.6 7.9E-12 1.7E-16 142.4 40.1 353 169-531 62-456 (765)
25 PRK09782 bacteriophage N4 rece 99.5 3E-10 6.6E-15 130.3 42.8 356 199-572 320-710 (987)
26 PRK09782 bacteriophage N4 rece 99.5 1.1E-10 2.3E-15 134.0 38.8 264 256-530 476-739 (987)
27 PRK10747 putative protoheme IX 99.5 1.5E-10 3.2E-15 122.0 35.0 283 270-565 97-389 (398)
28 TIGR00540 hemY_coli hemY prote 99.5 1.6E-10 3.5E-15 122.2 35.6 288 268-564 95-397 (409)
29 PF13429 TPR_15: Tetratricopep 99.5 3.2E-13 7E-18 135.5 13.6 259 262-527 13-273 (280)
30 PF13429 TPR_15: Tetratricopep 99.5 4.5E-13 9.7E-18 134.5 12.8 261 297-565 13-276 (280)
31 PRK10747 putative protoheme IX 99.5 9.5E-10 2.1E-14 115.8 37.6 285 232-530 95-389 (398)
32 KOG2076 RNA polymerase III tra 99.4 3.5E-09 7.6E-14 114.3 39.1 356 205-565 153-554 (895)
33 TIGR00540 hemY_coli hemY prote 99.4 1.8E-09 3.9E-14 114.3 37.1 288 233-529 96-397 (409)
34 KOG2076 RNA polymerase III tra 99.4 2.6E-09 5.7E-14 115.2 37.2 328 232-564 150-510 (895)
35 KOG1915 Cell cycle control pro 99.4 2.2E-08 4.8E-13 100.8 39.5 391 165-567 82-537 (677)
36 COG2956 Predicted N-acetylgluc 99.4 2.8E-09 6E-14 102.6 31.4 289 270-568 48-349 (389)
37 KOG2003 TPR repeat-containing 99.4 2E-08 4.4E-13 100.2 38.5 374 200-581 285-703 (840)
38 KOG2002 TPR-containing nuclear 99.4 4.8E-09 1E-13 113.9 36.6 380 203-592 211-619 (1018)
39 COG3071 HemY Uncharacterized e 99.4 6.8E-09 1.5E-13 102.9 34.5 300 262-571 87-395 (400)
40 COG2956 Predicted N-acetylgluc 99.4 4.4E-09 9.6E-14 101.3 31.8 295 225-530 39-346 (389)
41 KOG1126 DNA-binding cell divis 99.4 3.4E-10 7.4E-15 118.5 26.1 287 272-572 334-626 (638)
42 KOG2002 TPR-containing nuclear 99.4 5.9E-09 1.3E-13 113.2 35.8 361 203-572 354-749 (1018)
43 KOG1155 Anaphase-promoting com 99.3 1.2E-08 2.6E-13 102.6 33.9 293 264-565 234-535 (559)
44 KOG1126 DNA-binding cell divis 99.3 1.1E-09 2.4E-14 114.6 26.1 284 236-532 334-621 (638)
45 KOG4318 Bicoid mRNA stability 99.3 3.4E-10 7.4E-15 121.2 20.4 268 248-552 16-286 (1088)
46 TIGR02521 type_IV_pilW type IV 99.3 6.2E-09 1.3E-13 100.2 27.9 200 256-459 30-230 (234)
47 TIGR02521 type_IV_pilW type IV 99.3 7E-09 1.5E-13 99.9 28.1 200 362-565 31-231 (234)
48 KOG1155 Anaphase-promoting com 99.3 3.4E-08 7.5E-13 99.4 32.3 290 250-566 255-553 (559)
49 PRK12370 invasion protein regu 99.2 1.3E-08 2.8E-13 112.0 32.2 250 307-566 276-535 (553)
50 COG3071 HemY Uncharacterized e 99.2 2.5E-07 5.3E-12 92.0 35.0 286 233-530 96-389 (400)
51 KOG4318 Bicoid mRNA stability 99.2 1.1E-09 2.5E-14 117.3 20.0 264 218-517 21-286 (1088)
52 PRK12370 invasion protein regu 99.2 3.7E-08 8E-13 108.3 32.3 265 255-531 254-535 (553)
53 KOG0495 HAT repeat protein [RN 99.2 5.2E-07 1.1E-11 94.4 37.8 300 258-572 585-884 (913)
54 PF13041 PPR_2: PPR repeat fam 99.2 6.6E-11 1.4E-15 84.9 6.5 47 291-337 2-48 (50)
55 PF13041 PPR_2: PPR repeat fam 99.2 6.7E-11 1.5E-15 84.9 6.5 50 255-304 1-50 (50)
56 KOG2003 TPR repeat-containing 99.2 1.2E-08 2.7E-13 101.8 23.6 172 408-585 501-673 (840)
57 KOG1129 TPR repeat-containing 99.2 3.2E-09 7E-14 102.1 18.8 228 296-530 227-457 (478)
58 KOG0547 Translocase of outer m 99.1 3.3E-07 7.2E-12 93.0 31.9 223 337-565 336-565 (606)
59 KOG0495 HAT repeat protein [RN 99.1 2.3E-06 4.9E-11 89.8 38.6 304 258-572 517-850 (913)
60 PF12569 NARP1: NMDA receptor- 99.1 2.4E-07 5.2E-12 99.2 32.5 291 264-565 11-333 (517)
61 KOG1173 Anaphase-promoting com 99.1 7.5E-07 1.6E-11 92.1 32.3 280 288-579 240-529 (611)
62 KOG1129 TPR repeat-containing 99.0 3E-08 6.6E-13 95.5 19.7 234 331-572 227-462 (478)
63 KOG1174 Anaphase-promoting com 99.0 1.5E-05 3.3E-10 79.6 36.2 319 252-582 189-515 (564)
64 KOG0547 Translocase of outer m 98.9 1.3E-06 2.9E-11 88.7 28.0 298 261-566 119-491 (606)
65 cd05804 StaR_like StaR_like; a 98.9 1.2E-05 2.6E-10 83.5 36.1 304 258-566 7-336 (355)
66 KOG1915 Cell cycle control pro 98.9 2.5E-05 5.4E-10 79.3 35.9 352 203-566 85-500 (677)
67 KOG1840 Kinesin light chain [C 98.9 8.4E-07 1.8E-11 94.0 27.1 236 329-564 201-477 (508)
68 PRK11189 lipoprotein NlpI; Pro 98.9 1.4E-06 2.9E-11 88.1 27.0 118 306-425 40-160 (296)
69 KOG1173 Anaphase-promoting com 98.9 5.1E-06 1.1E-10 86.1 30.4 284 254-545 241-530 (611)
70 KOG1840 Kinesin light chain [C 98.9 1.5E-06 3.2E-11 92.2 27.1 239 291-529 198-477 (508)
71 KOG1174 Anaphase-promoting com 98.9 1.6E-05 3.5E-10 79.4 31.6 287 235-531 210-500 (564)
72 KOG2047 mRNA splicing factor [ 98.8 8.1E-05 1.7E-09 78.4 38.0 272 294-572 250-584 (835)
73 COG3063 PilF Tfp pilus assembl 98.8 3.7E-06 8E-11 78.0 24.7 205 260-470 38-243 (250)
74 PF12569 NARP1: NMDA receptor- 98.8 9.1E-06 2E-10 87.2 31.6 269 254-530 35-333 (517)
75 PRK11189 lipoprotein NlpI; Pro 98.8 5.2E-06 1.1E-10 83.9 28.5 218 271-497 40-266 (296)
76 COG3063 PilF Tfp pilus assembl 98.8 7.3E-06 1.6E-10 76.1 24.3 190 332-525 40-230 (250)
77 cd05804 StaR_like StaR_like; a 98.7 7.2E-05 1.6E-09 77.6 35.0 262 264-530 50-335 (355)
78 KOG2047 mRNA splicing factor [ 98.7 0.00034 7.4E-09 73.8 35.8 220 330-554 480-711 (835)
79 KOG3785 Uncharacterized conser 98.6 0.00046 9.9E-09 67.9 32.1 255 261-524 155-450 (557)
80 PRK04841 transcriptional regul 98.6 0.00047 1E-08 81.0 39.0 307 261-567 413-761 (903)
81 KOG4162 Predicted calmodulin-b 98.6 0.0012 2.5E-08 71.4 37.3 373 190-566 321-783 (799)
82 PF04733 Coatomer_E: Coatomer 98.6 1.6E-06 3.5E-11 86.6 15.4 247 269-531 13-265 (290)
83 KOG0624 dsRNA-activated protei 98.6 0.00081 1.8E-08 66.0 32.9 342 202-572 49-426 (504)
84 KOG1156 N-terminal acetyltrans 98.5 0.0014 3.1E-08 69.4 36.8 245 188-439 4-259 (700)
85 KOG4340 Uncharacterized conser 98.5 1.8E-05 3.9E-10 75.9 20.7 192 260-462 13-208 (459)
86 PF12854 PPR_1: PPR repeat 98.5 2.5E-07 5.5E-12 60.0 4.2 32 287-318 2-33 (34)
87 PF04733 Coatomer_E: Coatomer 98.4 6.5E-06 1.4E-10 82.3 16.3 255 300-572 9-269 (290)
88 KOG1156 N-terminal acetyltrans 98.4 0.0015 3.3E-08 69.2 33.9 128 434-564 373-509 (700)
89 KOG0548 Molecular co-chaperone 98.4 0.00028 6E-09 73.2 27.9 368 203-584 14-472 (539)
90 PLN02789 farnesyltranstransfer 98.4 0.00033 7.2E-09 71.0 28.5 146 260-409 40-188 (320)
91 KOG0624 dsRNA-activated protei 98.4 0.0012 2.6E-08 64.8 29.5 300 256-566 37-370 (504)
92 PLN02789 farnesyltranstransfer 98.4 0.00045 9.8E-09 70.1 27.7 132 236-372 52-186 (320)
93 PF12854 PPR_1: PPR repeat 98.4 5.2E-07 1.1E-11 58.5 4.0 34 251-284 1-34 (34)
94 KOG1128 Uncharacterized conser 98.3 7.3E-05 1.6E-09 79.9 21.7 218 328-566 399-616 (777)
95 KOG1070 rRNA processing protei 98.3 0.00041 8.8E-09 79.0 27.8 226 324-556 1455-1690(1710)
96 KOG0985 Vesicle coat protein c 98.3 0.00051 1.1E-08 75.7 27.5 306 198-561 991-1303(1666)
97 KOG2376 Signal recognition par 98.3 0.0082 1.8E-07 63.2 39.3 136 447-585 356-506 (652)
98 KOG0985 Vesicle coat protein c 98.3 0.0017 3.7E-08 71.7 30.8 308 203-557 1060-1374(1666)
99 KOG1128 Uncharacterized conser 98.3 8.2E-05 1.8E-09 79.6 20.3 234 258-512 399-633 (777)
100 PRK04841 transcriptional regul 98.3 0.0026 5.7E-08 74.8 35.5 270 263-532 458-761 (903)
101 KOG1070 rRNA processing protei 98.3 0.00056 1.2E-08 78.0 27.3 203 258-466 1459-1668(1710)
102 TIGR03302 OM_YfiO outer membra 98.3 0.00025 5.4E-09 69.0 22.3 187 359-566 30-232 (235)
103 KOG1914 mRNA cleavage and poly 98.2 0.0047 1E-07 64.4 31.3 345 221-572 19-470 (656)
104 KOG1125 TPR repeat-containing 98.2 8.5E-05 1.8E-09 77.5 19.1 218 337-564 295-525 (579)
105 TIGR03302 OM_YfiO outer membra 98.2 0.00023 5E-09 69.2 21.6 185 255-460 31-231 (235)
106 KOG1125 TPR repeat-containing 98.2 0.00021 4.6E-09 74.6 21.4 252 301-559 294-564 (579)
107 KOG4162 Predicted calmodulin-b 98.2 0.0058 1.3E-07 66.2 31.9 356 169-531 336-783 (799)
108 KOG4340 Uncharacterized conser 98.2 0.0025 5.5E-08 61.5 26.2 316 201-529 20-373 (459)
109 KOG2376 Signal recognition par 98.2 0.01 2.2E-07 62.5 31.8 372 169-561 92-515 (652)
110 PRK14720 transcript cleavage f 98.1 0.00086 1.9E-08 75.8 25.6 239 254-548 28-268 (906)
111 PRK10370 formate-dependent nit 98.1 0.00059 1.3E-08 64.4 20.6 119 305-426 52-173 (198)
112 PRK10370 formate-dependent nit 98.1 0.00075 1.6E-08 63.7 21.0 157 298-470 22-181 (198)
113 PRK14720 transcript cleavage f 98.1 0.0015 3.3E-08 73.9 26.4 238 220-513 29-268 (906)
114 KOG3081 Vesicle coat complex C 98.1 0.0019 4.2E-08 61.5 22.7 170 349-529 95-269 (299)
115 PRK15359 type III secretion sy 98.1 0.00044 9.6E-09 61.7 17.5 89 299-389 31-119 (144)
116 KOG3616 Selective LIM binding 98.0 0.0021 4.5E-08 68.8 24.5 193 299-525 739-931 (1636)
117 KOG3081 Vesicle coat complex C 98.0 0.002 4.3E-08 61.4 21.8 255 299-572 15-275 (299)
118 COG5010 TadD Flp pilus assembl 98.0 0.00088 1.9E-08 63.8 19.2 159 261-423 70-228 (257)
119 COG5010 TadD Flp pilus assembl 98.0 0.002 4.4E-08 61.3 21.4 56 333-389 106-161 (257)
120 KOG2053 Mitochondrial inherita 98.0 0.03 6.6E-07 61.8 32.4 75 268-345 54-128 (932)
121 PRK15179 Vi polysaccharide bio 98.0 0.0041 8.9E-08 69.5 26.8 182 324-515 83-268 (694)
122 KOG3785 Uncharacterized conser 97.9 0.026 5.6E-07 55.9 32.2 343 203-563 69-454 (557)
123 KOG3617 WD40 and TPR repeat-co 97.9 0.0078 1.7E-07 65.5 26.7 316 195-561 729-1104(1416)
124 PRK15179 Vi polysaccharide bio 97.9 0.0056 1.2E-07 68.5 27.0 183 288-480 82-268 (694)
125 PRK15359 type III secretion sy 97.9 0.0011 2.4E-08 59.1 17.5 88 441-530 33-120 (144)
126 TIGR00756 PPR pentatricopeptid 97.9 2.8E-05 6.2E-10 50.4 4.6 33 539-571 2-34 (35)
127 KOG3617 WD40 and TPR repeat-co 97.8 0.0074 1.6E-07 65.6 24.4 151 218-388 722-884 (1416)
128 TIGR02552 LcrH_SycD type III s 97.8 0.00085 1.8E-08 58.9 15.2 60 364-424 53-112 (135)
129 TIGR02552 LcrH_SycD type III s 97.8 0.0011 2.4E-08 58.1 15.7 97 362-460 17-113 (135)
130 KOG3060 Uncharacterized conser 97.8 0.022 4.7E-07 54.2 24.3 168 253-425 47-219 (289)
131 COG4783 Putative Zn-dependent 97.8 0.034 7.5E-07 57.6 27.7 183 324-531 271-454 (484)
132 TIGR00756 PPR pentatricopeptid 97.8 4.6E-05 1E-09 49.4 4.6 33 259-291 2-34 (35)
133 KOG3616 Selective LIM binding 97.8 0.015 3.2E-07 62.5 24.9 219 299-560 713-931 (1636)
134 PF13812 PPR_3: Pentatricopept 97.7 4.2E-05 9.2E-10 49.4 4.0 32 259-290 3-34 (34)
135 KOG1914 mRNA cleavage and poly 97.7 0.094 2E-06 55.0 32.7 151 413-566 347-501 (656)
136 PF09295 ChAPs: ChAPs (Chs5p-A 97.7 0.0018 3.9E-08 67.2 17.3 125 295-425 172-296 (395)
137 COG4783 Putative Zn-dependent 97.7 0.017 3.6E-07 59.9 23.8 182 290-496 272-454 (484)
138 PF13812 PPR_3: Pentatricopept 97.7 7.6E-05 1.7E-09 48.2 4.6 33 538-570 2-34 (34)
139 PF10037 MRP-S27: Mitochondria 97.7 0.00038 8.2E-09 72.5 11.8 123 253-375 62-186 (429)
140 PF09976 TPR_21: Tetratricopep 97.6 0.0031 6.7E-08 56.3 15.8 124 435-562 15-143 (145)
141 KOG1127 TPR repeat-containing 97.6 0.017 3.8E-07 64.3 23.8 165 187-355 487-658 (1238)
142 KOG3060 Uncharacterized conser 97.6 0.065 1.4E-06 51.0 24.1 152 271-425 26-182 (289)
143 PF09295 ChAPs: ChAPs (Chs5p-A 97.6 0.0022 4.7E-08 66.6 16.0 126 260-391 172-297 (395)
144 PF09976 TPR_21: Tetratricopep 97.6 0.0047 1E-07 55.1 16.0 85 335-421 56-142 (145)
145 PF08579 RPM2: Mitochondrial r 97.6 0.0011 2.5E-08 54.8 10.6 78 261-338 29-115 (120)
146 PF10037 MRP-S27: Mitochondria 97.5 0.0015 3.2E-08 68.2 13.5 124 322-445 61-186 (429)
147 PF08579 RPM2: Mitochondrial r 97.5 0.0027 5.9E-08 52.6 11.6 78 402-479 30-116 (120)
148 KOG0548 Molecular co-chaperone 97.4 0.23 5E-06 52.2 33.7 356 168-532 14-456 (539)
149 KOG2053 Mitochondrial inherita 97.4 0.35 7.5E-06 53.9 33.0 226 267-499 19-258 (932)
150 KOG1127 TPR repeat-containing 97.4 0.039 8.5E-07 61.6 22.8 181 378-565 474-658 (1238)
151 PF07079 DUF1347: Protein of u 97.4 0.22 4.9E-06 51.3 38.2 351 203-563 18-521 (549)
152 cd00189 TPR Tetratricopeptide 97.4 0.0038 8.2E-08 49.5 11.8 94 260-355 3-96 (100)
153 TIGR02795 tol_pal_ybgF tol-pal 97.3 0.0086 1.9E-07 50.8 13.8 98 259-356 4-105 (119)
154 cd00189 TPR Tetratricopeptide 97.3 0.0049 1.1E-07 48.9 11.6 16 405-420 76-91 (100)
155 PF01535 PPR: PPR repeat; Int 97.3 0.00036 7.9E-09 43.8 3.7 30 539-568 2-31 (31)
156 PF01535 PPR: PPR repeat; Int 97.3 0.00028 6.1E-09 44.3 3.1 29 259-287 2-30 (31)
157 TIGR02795 tol_pal_ybgF tol-pal 97.2 0.012 2.7E-07 49.8 14.1 93 297-391 7-105 (119)
158 PF06239 ECSIT: Evolutionarily 97.2 0.0088 1.9E-07 55.8 13.1 104 325-447 45-153 (228)
159 PRK02603 photosystem I assembl 97.1 0.031 6.7E-07 51.4 16.7 91 256-347 34-126 (172)
160 PF06239 ECSIT: Evolutionarily 97.1 0.0034 7.4E-08 58.4 9.7 105 359-482 44-153 (228)
161 PF14938 SNAP: Soluble NSF att 97.1 0.084 1.8E-06 52.8 20.4 93 438-531 120-225 (282)
162 PRK10866 outer membrane biogen 97.0 0.15 3.2E-06 49.8 20.8 189 262-458 37-238 (243)
163 PRK10866 outer membrane biogen 97.0 0.21 4.5E-06 48.8 21.8 183 362-564 32-239 (243)
164 PF14938 SNAP: Soluble NSF att 97.0 0.098 2.1E-06 52.4 20.1 115 399-513 116-246 (282)
165 PLN03088 SGT1, suppressor of 97.0 0.018 3.9E-07 59.7 15.0 91 439-531 9-99 (356)
166 PF04840 Vps16_C: Vps16, C-ter 97.0 0.51 1.1E-05 47.9 27.0 108 433-560 178-285 (319)
167 PF12895 Apc3: Anaphase-promot 97.0 0.002 4.3E-08 51.5 5.9 81 480-562 2-83 (84)
168 PF05843 Suf: Suppressor of fo 97.0 0.017 3.7E-07 57.7 13.9 129 294-425 3-135 (280)
169 PLN03088 SGT1, suppressor of 96.9 0.024 5.3E-07 58.7 15.4 92 299-392 9-100 (356)
170 PRK02603 photosystem I assembl 96.9 0.04 8.7E-07 50.6 15.4 62 294-355 37-100 (172)
171 PRK15363 pathogenicity island 96.8 0.029 6.4E-07 49.9 12.7 92 262-355 40-131 (157)
172 PRK15363 pathogenicity island 96.8 0.028 6.1E-07 50.0 12.6 87 476-564 44-130 (157)
173 PF05843 Suf: Suppressor of fo 96.8 0.036 7.7E-07 55.4 14.8 129 328-460 2-135 (280)
174 CHL00033 ycf3 photosystem I as 96.8 0.028 6.1E-07 51.4 12.8 61 330-390 38-100 (168)
175 CHL00033 ycf3 photosystem I as 96.7 0.032 6.9E-07 51.1 12.9 81 257-338 35-117 (168)
176 KOG0553 TPR repeat-containing 96.7 0.022 4.9E-07 55.5 12.0 91 478-572 92-182 (304)
177 PF12688 TPR_5: Tetratrico pep 96.7 0.094 2E-06 44.9 14.6 90 334-424 8-102 (120)
178 PF04840 Vps16_C: Vps16, C-ter 96.6 1 2.3E-05 45.7 25.4 108 399-526 179-286 (319)
179 PRK10153 DNA-binding transcrip 96.6 0.21 4.5E-06 54.3 19.6 61 363-425 421-481 (517)
180 KOG0550 Molecular chaperone (D 96.6 0.29 6.3E-06 49.9 18.8 261 266-531 58-350 (486)
181 PF14559 TPR_19: Tetratricopep 96.5 0.0098 2.1E-07 45.1 6.8 63 268-333 2-64 (68)
182 PRK10153 DNA-binding transcrip 96.4 0.36 7.7E-06 52.5 19.8 14 324-337 334-347 (517)
183 KOG2041 WD40 repeat protein [G 96.3 1.7 3.7E-05 47.2 23.8 304 254-584 689-1070(1189)
184 COG3898 Uncharacterized membra 96.3 1.5 3.2E-05 44.6 31.4 261 255-531 116-392 (531)
185 PF13432 TPR_16: Tetratricopep 96.3 0.019 4.1E-07 43.1 6.9 57 508-565 3-59 (65)
186 KOG0553 TPR repeat-containing 96.2 0.059 1.3E-06 52.6 11.5 101 267-371 91-191 (304)
187 PF03704 BTAD: Bacterial trans 96.2 0.04 8.7E-07 49.0 9.9 74 503-577 63-141 (146)
188 KOG2041 WD40 repeat protein [G 96.1 2.7 5.8E-05 45.9 25.0 107 259-388 798-904 (1189)
189 PF12688 TPR_5: Tetratrico pep 96.1 0.27 5.9E-06 42.1 13.9 54 267-320 11-66 (120)
190 PF14559 TPR_19: Tetratricopep 96.1 0.029 6.2E-07 42.4 7.2 50 375-425 4-53 (68)
191 PF13525 YfiO: Outer membrane 96.0 0.95 2.1E-05 42.8 18.9 171 367-557 10-198 (203)
192 PF13432 TPR_16: Tetratricopep 96.0 0.029 6.2E-07 42.1 6.8 55 265-320 5-59 (65)
193 PF13414 TPR_11: TPR repeat; P 96.0 0.043 9.3E-07 41.6 7.8 61 363-424 4-65 (69)
194 PF13414 TPR_11: TPR repeat; P 95.9 0.044 9.6E-07 41.5 7.5 64 501-565 2-66 (69)
195 KOG0550 Molecular chaperone (D 95.9 0.84 1.8E-05 46.7 18.1 264 299-570 56-354 (486)
196 KOG2796 Uncharacterized conser 95.9 0.46 9.9E-06 45.6 15.3 58 331-388 181-238 (366)
197 PF13525 YfiO: Outer membrane 95.9 1.3 2.8E-05 41.9 19.0 55 266-320 14-70 (203)
198 COG4235 Cytochrome c biogenesi 95.8 0.47 1E-05 46.7 15.8 101 324-426 153-256 (287)
199 COG4700 Uncharacterized protei 95.8 1.4 3.1E-05 40.2 18.9 101 430-530 87-188 (251)
200 COG4700 Uncharacterized protei 95.7 1.6 3.5E-05 39.9 19.0 101 290-390 87-188 (251)
201 PRK10803 tol-pal system protei 95.7 0.27 5.9E-06 48.4 13.8 98 469-566 145-246 (263)
202 KOG2280 Vacuolar assembly/sort 95.7 4.5 9.7E-05 44.6 28.1 318 203-560 449-793 (829)
203 PF13281 DUF4071: Domain of un 95.6 2.3 5E-05 43.8 20.6 28 539-566 307-334 (374)
204 KOG1130 Predicted G-alpha GTPa 95.6 0.2 4.3E-06 50.9 12.5 133 433-565 196-343 (639)
205 PF12921 ATP13: Mitochondrial 95.5 0.19 4.1E-06 43.4 10.7 49 429-477 49-98 (126)
206 PRK10803 tol-pal system protei 95.5 0.29 6.3E-06 48.2 13.4 95 260-356 146-246 (263)
207 COG4235 Cytochrome c biogenesi 95.5 0.82 1.8E-05 45.0 16.1 99 431-531 155-256 (287)
208 PF03704 BTAD: Bacterial trans 95.4 0.13 2.8E-06 45.7 9.8 56 367-423 67-122 (146)
209 PF12921 ATP13: Mitochondrial 95.3 0.23 5.1E-06 42.9 10.5 51 392-442 47-98 (126)
210 PF13281 DUF4071: Domain of un 95.0 4.3 9.2E-05 41.9 20.2 32 430-461 303-334 (374)
211 PF13371 TPR_9: Tetratricopept 94.9 0.18 3.9E-06 38.6 8.1 55 511-566 4-58 (73)
212 KOG2796 Uncharacterized conser 94.9 3.9 8.3E-05 39.6 25.1 133 399-532 179-316 (366)
213 PF13371 TPR_9: Tetratricopept 94.9 0.17 3.7E-06 38.7 7.9 56 265-321 3-58 (73)
214 KOG1920 IkappaB kinase complex 94.7 10 0.00022 44.2 23.5 101 407-527 949-1051(1265)
215 KOG3941 Intermediate in Toll s 94.6 0.52 1.1E-05 45.7 11.4 118 254-390 64-187 (406)
216 KOG3941 Intermediate in Toll s 94.5 0.29 6.3E-06 47.4 9.7 106 324-448 64-174 (406)
217 KOG1538 Uncharacterized conser 94.5 3.2 7E-05 44.9 18.1 89 467-566 747-846 (1081)
218 PF08631 SPO22: Meiosis protei 94.4 5.9 0.00013 39.5 26.1 123 267-391 3-150 (278)
219 KOG1538 Uncharacterized conser 94.4 6.1 0.00013 42.9 19.7 216 260-495 601-845 (1081)
220 PRK15331 chaperone protein Sic 94.2 1.3 2.9E-05 39.8 12.7 87 302-390 47-133 (165)
221 PRK15331 chaperone protein Sic 94.2 0.47 1E-05 42.6 9.8 86 443-530 48-133 (165)
222 PF13424 TPR_12: Tetratricopep 94.2 0.17 3.7E-06 39.4 6.4 62 503-564 6-73 (78)
223 PF13170 DUF4003: Protein of u 94.1 6.6 0.00014 39.5 19.1 138 379-518 79-233 (297)
224 PF04053 Coatomer_WDAD: Coatom 94.1 1.7 3.7E-05 46.3 15.6 132 397-561 295-426 (443)
225 PLN03098 LPA1 LOW PSII ACCUMUL 94.1 1.2 2.5E-05 46.7 13.7 66 254-321 72-141 (453)
226 COG5107 RNA14 Pre-mRNA 3'-end 93.9 2.6 5.6E-05 43.7 15.4 130 293-425 398-530 (660)
227 PF07035 Mic1: Colon cancer-as 93.7 4.9 0.00011 36.5 15.5 31 314-344 16-46 (167)
228 KOG1130 Predicted G-alpha GTPa 93.6 0.3 6.5E-06 49.7 8.2 97 468-564 196-302 (639)
229 smart00299 CLH Clathrin heavy 93.6 4.7 0.0001 35.3 15.6 42 403-445 13-54 (140)
230 PF13170 DUF4003: Protein of u 93.6 4.7 0.0001 40.5 16.8 126 310-437 80-222 (297)
231 PF13424 TPR_12: Tetratricopep 93.5 0.15 3.2E-06 39.7 4.9 61 259-319 7-73 (78)
232 COG3118 Thioredoxin domain-con 93.3 8.5 0.00018 38.0 17.3 52 267-319 144-195 (304)
233 COG3629 DnrI DNA-binding trans 93.1 1.1 2.3E-05 44.2 11.1 79 502-581 153-236 (280)
234 smart00299 CLH Clathrin heavy 93.1 5.6 0.00012 34.8 15.2 44 261-305 11-54 (140)
235 PLN03098 LPA1 LOW PSII ACCUMUL 93.0 1.4 3E-05 46.1 12.3 63 291-355 74-140 (453)
236 KOG0543 FKBP-type peptidyl-pro 92.8 1.7 3.6E-05 44.6 12.2 90 265-355 216-319 (397)
237 COG0457 NrfG FOG: TPR repeat [ 92.8 7.7 0.00017 35.6 31.3 189 306-495 37-230 (291)
238 PF04053 Coatomer_WDAD: Coatom 92.7 3.3 7.2E-05 44.1 15.0 156 265-456 269-426 (443)
239 KOG0543 FKBP-type peptidyl-pro 92.4 2.2 4.8E-05 43.7 12.5 140 298-461 214-355 (397)
240 PF09205 DUF1955: Domain of un 92.2 7.1 0.00015 33.7 14.9 64 468-532 87-150 (161)
241 PF04184 ST7: ST7 protein; In 91.9 12 0.00025 39.8 17.2 63 468-530 260-323 (539)
242 COG4649 Uncharacterized protei 91.8 9.9 0.00021 34.5 14.2 133 398-531 60-196 (221)
243 COG5107 RNA14 Pre-mRNA 3'-end 91.4 21 0.00045 37.4 30.1 141 212-356 30-190 (660)
244 KOG4555 TPR repeat-containing 91.0 6.9 0.00015 33.7 11.9 90 302-392 53-145 (175)
245 PF10300 DUF3808: Protein of u 90.9 12 0.00026 40.3 17.1 179 275-460 175-375 (468)
246 KOG1585 Protein required for f 90.8 16 0.00034 35.1 19.9 55 470-525 193-250 (308)
247 PF04184 ST7: ST7 protein; In 90.7 12 0.00026 39.6 15.9 164 408-585 179-345 (539)
248 COG0457 NrfG FOG: TPR repeat [ 90.2 14 0.00031 33.7 30.7 224 270-496 36-265 (291)
249 KOG1585 Protein required for f 90.2 18 0.00039 34.8 18.0 205 330-560 34-250 (308)
250 COG3629 DnrI DNA-binding trans 90.1 3.3 7.2E-05 40.9 10.9 77 259-336 155-236 (280)
251 KOG2610 Uncharacterized conser 89.9 6.8 0.00015 39.2 12.6 155 268-425 114-275 (491)
252 KOG2610 Uncharacterized conser 89.7 8.1 0.00018 38.7 13.0 152 374-528 115-273 (491)
253 COG3118 Thioredoxin domain-con 89.7 23 0.00049 35.1 17.2 144 299-446 141-286 (304)
254 PF13512 TPR_18: Tetratricopep 89.6 7.2 0.00015 34.3 11.4 82 223-304 12-94 (142)
255 COG1729 Uncharacterized protei 89.2 5.7 0.00012 38.7 11.5 26 505-530 218-243 (262)
256 PF10300 DUF3808: Protein of u 89.1 36 0.00078 36.7 23.8 163 330-495 191-375 (468)
257 KOG1550 Extracellular protein 88.5 33 0.00071 37.9 18.6 17 374-390 261-277 (552)
258 KOG4570 Uncharacterized conser 88.4 7.5 0.00016 38.6 11.7 104 287-392 59-165 (418)
259 KOG1550 Extracellular protein 88.3 45 0.00098 36.8 24.1 275 273-566 228-538 (552)
260 COG3898 Uncharacterized membra 88.2 34 0.00073 35.3 29.8 283 203-501 96-397 (531)
261 COG1729 Uncharacterized protei 88.2 7.8 0.00017 37.8 11.7 97 364-461 144-244 (262)
262 KOG2114 Vacuolar assembly/sort 87.9 7 0.00015 43.8 12.3 243 295-565 337-589 (933)
263 PRK11906 transcriptional regul 87.6 41 0.00089 35.6 17.9 80 449-530 321-400 (458)
264 PF08631 SPO22: Meiosis protei 87.6 31 0.00068 34.2 28.3 163 398-563 85-272 (278)
265 PF13428 TPR_14: Tetratricopep 87.5 1.6 3.6E-05 29.6 5.0 27 505-531 4-30 (44)
266 PF13512 TPR_18: Tetratricopep 86.7 19 0.00042 31.6 12.3 23 438-460 53-75 (142)
267 PF13428 TPR_14: Tetratricopep 86.6 2.5 5.5E-05 28.6 5.5 16 407-422 11-26 (44)
268 PRK11906 transcriptional regul 86.5 47 0.001 35.2 17.8 116 308-425 274-400 (458)
269 PF13929 mRNA_stabil: mRNA sta 86.3 13 0.00029 36.6 12.2 122 253-374 160-290 (292)
270 KOG4555 TPR repeat-containing 86.3 21 0.00046 30.9 12.2 92 336-428 52-146 (175)
271 PF07079 DUF1347: Protein of u 85.9 50 0.0011 34.8 28.5 275 267-565 16-326 (549)
272 PF02259 FAT: FAT domain; Int 85.6 45 0.00098 34.0 23.0 54 263-320 4-57 (352)
273 PF10602 RPN7: 26S proteasome 85.5 17 0.00037 33.4 12.2 60 365-424 39-100 (177)
274 PF10602 RPN7: 26S proteasome 85.5 10 0.00022 35.0 10.6 59 295-353 39-99 (177)
275 PF13176 TPR_7: Tetratricopept 85.4 2 4.3E-05 27.8 4.2 26 539-564 1-26 (36)
276 COG4649 Uncharacterized protei 85.3 29 0.00063 31.6 14.4 54 268-321 69-123 (221)
277 COG4105 ComL DNA uptake lipopr 85.1 39 0.00084 32.8 20.9 184 259-460 37-232 (254)
278 PF07035 Mic1: Colon cancer-as 84.4 32 0.00069 31.3 16.3 27 422-448 19-45 (167)
279 KOG1941 Acetylcholine receptor 84.3 48 0.001 33.8 15.0 226 303-528 17-272 (518)
280 PF09205 DUF1955: Domain of un 84.2 27 0.00059 30.3 17.8 62 506-568 90-151 (161)
281 PRK11619 lytic murein transgly 83.8 82 0.0018 35.5 32.1 131 446-585 255-388 (644)
282 KOG1941 Acetylcholine receptor 83.8 54 0.0012 33.5 15.1 127 367-493 127-272 (518)
283 KOG2114 Vacuolar assembly/sort 83.8 21 0.00045 40.3 13.3 179 329-528 336-516 (933)
284 COG4105 ComL DNA uptake lipopr 82.6 49 0.0011 32.1 23.9 174 373-566 45-233 (254)
285 PF13176 TPR_7: Tetratricopept 82.4 3 6.5E-05 26.9 4.2 23 295-317 2-24 (36)
286 PF13929 mRNA_stabil: mRNA sta 82.1 56 0.0012 32.4 21.9 132 412-543 143-284 (292)
287 PF02284 COX5A: Cytochrome c o 79.8 11 0.00025 30.8 7.4 60 485-545 28-87 (108)
288 cd00923 Cyt_c_Oxidase_Va Cytoc 79.5 15 0.00033 29.8 7.8 49 483-531 23-71 (103)
289 PF09613 HrpB1_HrpK: Bacterial 79.2 48 0.001 29.8 13.7 52 443-496 21-73 (160)
290 PF13762 MNE1: Mitochondrial s 79.0 43 0.00093 29.6 11.4 93 248-340 28-128 (145)
291 COG3947 Response regulator con 78.2 75 0.0016 31.5 15.0 54 438-492 285-338 (361)
292 KOG2063 Vacuolar assembly/sort 77.8 1E+02 0.0022 35.7 16.8 28 259-286 506-533 (877)
293 PF13431 TPR_17: Tetratricopep 77.5 3.3 7.1E-05 26.4 3.0 22 536-557 12-33 (34)
294 PF09613 HrpB1_HrpK: Bacterial 77.5 54 0.0012 29.5 14.4 67 268-338 21-88 (160)
295 COG4785 NlpI Lipoprotein NlpI, 76.9 69 0.0015 30.4 18.7 177 308-496 81-266 (297)
296 PF04097 Nic96: Nup93/Nic96; 76.8 36 0.00077 38.2 13.0 90 367-461 263-356 (613)
297 KOG2280 Vacuolar assembly/sort 76.8 1.4E+02 0.0029 33.7 29.8 298 250-563 425-770 (829)
298 cd00923 Cyt_c_Oxidase_Va Cytoc 76.5 19 0.00041 29.3 7.6 46 344-389 24-69 (103)
299 PRK09687 putative lyase; Provi 76.0 88 0.0019 31.1 28.7 136 361-512 141-277 (280)
300 COG3947 Response regulator con 75.7 89 0.0019 31.1 15.2 58 400-458 282-339 (361)
301 PF11207 DUF2989: Protein of u 75.7 36 0.00077 31.9 10.4 78 303-382 118-198 (203)
302 PF00515 TPR_1: Tetratricopept 75.2 8.1 0.00018 24.1 4.5 29 538-566 2-30 (34)
303 PF13431 TPR_17: Tetratricopep 75.1 4.3 9.4E-05 25.9 3.2 24 394-417 10-33 (34)
304 TIGR02561 HrpB1_HrpK type III 74.3 63 0.0014 28.7 13.4 64 257-322 7-74 (153)
305 KOG4570 Uncharacterized conser 73.3 38 0.00082 33.9 10.3 103 392-496 59-164 (418)
306 PHA02875 ankyrin repeat protei 72.7 82 0.0018 33.1 14.2 18 203-220 11-28 (413)
307 PF11207 DUF2989: Protein of u 72.6 32 0.0007 32.1 9.4 16 433-448 179-194 (203)
308 PF02284 COX5A: Cytochrome c o 72.6 51 0.0011 27.2 9.3 47 345-391 28-74 (108)
309 PF07719 TPR_2: Tetratricopept 72.2 11 0.00023 23.4 4.5 29 538-566 2-30 (34)
310 PF13374 TPR_10: Tetratricopep 71.5 9.9 0.00022 24.7 4.5 26 294-319 4-29 (42)
311 PF13374 TPR_10: Tetratricopep 70.5 11 0.00024 24.5 4.6 27 538-564 3-29 (42)
312 PF00515 TPR_1: Tetratricopept 69.1 12 0.00026 23.3 4.3 20 298-317 7-26 (34)
313 KOG0276 Vesicle coat complex C 69.0 57 0.0012 35.5 11.3 81 291-386 665-745 (794)
314 PF10345 Cohesin_load: Cohesin 68.8 2E+02 0.0044 32.2 33.9 195 220-423 28-251 (608)
315 COG4455 ImpE Protein of avirul 68.4 33 0.00071 32.5 8.3 57 331-388 5-61 (273)
316 TIGR02561 HrpB1_HrpK type III 68.1 88 0.0019 27.8 11.4 50 444-497 22-74 (153)
317 KOG1258 mRNA processing protei 67.9 1.9E+02 0.0042 31.6 32.6 99 188-286 75-180 (577)
318 COG1747 Uncharacterized N-term 67.4 1.8E+02 0.004 31.3 26.4 165 290-461 64-234 (711)
319 smart00638 LPD_N Lipoprotein N 67.3 2.1E+02 0.0045 31.8 25.8 16 259-274 342-357 (574)
320 COG4455 ImpE Protein of avirul 67.3 37 0.00081 32.1 8.5 76 365-441 4-81 (273)
321 PF07719 TPR_2: Tetratricopept 67.0 14 0.0003 22.8 4.3 23 297-319 6-28 (34)
322 PRK09687 putative lyase; Provi 66.8 1.4E+02 0.0031 29.7 32.1 137 395-547 140-277 (280)
323 PHA02875 ankyrin repeat protei 64.8 1.3E+02 0.0028 31.6 13.7 81 227-316 5-89 (413)
324 PF00637 Clathrin: Region in C 63.8 1.7 3.8E-05 38.2 -0.8 54 263-316 13-66 (143)
325 PF00637 Clathrin: Region in C 62.4 2.8 6E-05 36.9 0.3 54 298-351 13-66 (143)
326 PRK15180 Vi polysaccharide bio 61.3 1.1E+02 0.0024 32.4 11.4 85 443-529 334-418 (831)
327 COG4785 NlpI Lipoprotein NlpI, 61.1 1.5E+02 0.0033 28.2 16.9 181 376-568 79-268 (297)
328 PF10345 Cohesin_load: Cohesin 61.1 2.8E+02 0.006 31.1 35.8 195 254-458 27-251 (608)
329 PF13181 TPR_8: Tetratricopept 60.6 24 0.00052 21.8 4.5 27 539-565 3-29 (34)
330 PF02259 FAT: FAT domain; Int 59.7 2E+02 0.0044 29.1 24.1 30 255-286 29-58 (352)
331 KOG0276 Vesicle coat complex C 59.0 94 0.002 34.0 10.6 133 259-424 616-748 (794)
332 KOG4648 Uncharacterized conser 57.9 31 0.00067 34.8 6.6 53 440-494 105-158 (536)
333 PF13174 TPR_6: Tetratricopept 57.2 14 0.0003 22.5 2.9 23 543-565 6-28 (33)
334 KOG4234 TPR repeat-containing 56.9 1.3E+02 0.0029 28.2 9.9 90 300-391 103-197 (271)
335 PF07163 Pex26: Pex26 protein; 56.4 1.2E+02 0.0026 30.0 10.1 87 334-420 90-181 (309)
336 PF06552 TOM20_plant: Plant sp 56.3 1.4E+02 0.003 27.6 9.9 14 324-337 110-123 (186)
337 PF07163 Pex26: Pex26 protein; 55.6 1.3E+02 0.0028 29.8 10.2 86 438-525 89-181 (309)
338 PF13762 MNE1: Mitochondrial s 55.1 1.5E+02 0.0033 26.2 11.1 80 365-444 42-127 (145)
339 PF08424 NRDE-2: NRDE-2, neces 54.9 2.4E+02 0.0053 28.6 17.1 122 449-572 48-190 (321)
340 PF13181 TPR_8: Tetratricopept 54.8 36 0.00078 20.9 4.6 27 399-425 3-29 (34)
341 COG2909 MalT ATP-dependent tra 53.8 4.1E+02 0.0088 30.8 26.1 197 372-570 425-651 (894)
342 TIGR02508 type_III_yscG type I 53.7 1.3E+02 0.0027 24.9 8.2 51 406-462 48-98 (115)
343 KOG4479 Transcription factor e 53.3 6.9 0.00015 30.1 1.0 20 56-75 15-42 (92)
344 COG1747 Uncharacterized N-term 53.3 3.3E+02 0.0071 29.5 26.6 181 324-512 63-249 (711)
345 PRK15180 Vi polysaccharide bio 52.5 3.2E+02 0.007 29.2 13.9 125 264-392 296-421 (831)
346 KOG2066 Vacuolar assembly/sort 52.5 4E+02 0.0087 30.3 24.4 64 203-269 404-467 (846)
347 KOG2297 Predicted translation 51.7 2.7E+02 0.0058 28.0 13.5 19 398-416 322-340 (412)
348 KOG4077 Cytochrome c oxidase, 50.6 1.1E+02 0.0023 26.4 7.7 47 485-531 67-113 (149)
349 TIGR03504 FimV_Cterm FimV C-te 50.4 33 0.00073 23.4 3.9 23 508-530 5-27 (44)
350 KOG0991 Replication factor C, 50.3 2.5E+02 0.0053 27.2 13.7 124 403-535 136-271 (333)
351 COG5159 RPN6 26S proteasome re 49.8 2.8E+02 0.006 27.6 12.1 128 298-425 9-153 (421)
352 PF07721 TPR_4: Tetratricopept 49.8 24 0.00053 20.7 2.9 18 543-560 7-24 (26)
353 PF04097 Nic96: Nup93/Nic96; 49.5 3.6E+02 0.0078 30.3 14.2 18 298-315 117-134 (613)
354 COG2976 Uncharacterized protei 48.9 2.3E+02 0.005 26.5 15.6 93 473-567 95-189 (207)
355 PF10255 Paf67: RNA polymerase 48.4 3.5E+02 0.0076 28.5 13.7 61 259-319 124-191 (404)
356 KOG2582 COP9 signalosome, subu 47.5 3.4E+02 0.0073 28.0 16.6 56 512-567 287-346 (422)
357 PF09477 Type_III_YscG: Bacter 47.4 1.7E+02 0.0036 24.5 8.9 79 377-462 21-99 (116)
358 KOG2063 Vacuolar assembly/sort 47.1 5.1E+02 0.011 30.3 14.8 116 329-444 506-638 (877)
359 KOG4648 Uncharacterized conser 46.5 61 0.0013 32.8 6.6 54 299-354 104-158 (536)
360 KOG2034 Vacuolar sorting prote 46.3 5.3E+02 0.011 29.9 25.8 69 262-344 363-433 (911)
361 PF10579 Rapsyn_N: Rapsyn N-te 45.8 69 0.0015 25.0 5.4 16 470-485 46-61 (80)
362 KOG2396 HAT (Half-A-TPR) repea 44.8 4.3E+02 0.0094 28.5 32.3 98 464-564 456-557 (568)
363 TIGR03504 FimV_Cterm FimV C-te 44.5 45 0.00099 22.8 3.9 21 299-319 6-26 (44)
364 PF11838 ERAP1_C: ERAP1-like C 43.4 3.5E+02 0.0076 27.0 17.3 35 198-232 45-83 (324)
365 PRK12798 chemotaxis protein; R 43.4 4.2E+02 0.0091 27.9 22.7 193 375-572 125-330 (421)
366 KOG4234 TPR repeat-containing 43.3 1.8E+02 0.004 27.3 8.6 90 405-496 103-197 (271)
367 KOG1258 mRNA processing protei 43.2 4.9E+02 0.011 28.6 27.3 290 260-557 82-420 (577)
368 PRK10564 maltose regulon perip 43.1 57 0.0012 32.5 5.8 39 252-290 251-290 (303)
369 KOG2066 Vacuolar assembly/sort 43.0 5.6E+02 0.012 29.3 24.9 74 264-343 363-439 (846)
370 PF06552 TOM20_plant: Plant sp 41.4 2.8E+02 0.0061 25.6 9.5 43 448-498 96-138 (186)
371 PF10579 Rapsyn_N: Rapsyn N-te 40.9 78 0.0017 24.8 5.0 45 514-559 18-65 (80)
372 PF11846 DUF3366: Domain of un 40.1 1.3E+02 0.0029 27.8 7.8 33 533-565 140-172 (193)
373 COG0735 Fur Fe2+/Zn2+ uptake r 39.6 1.6E+02 0.0034 26.1 7.7 57 283-340 12-68 (145)
374 COG2976 Uncharacterized protei 39.4 3.3E+02 0.0071 25.5 15.6 129 397-532 54-189 (207)
375 smart00028 TPR Tetratricopepti 39.4 43 0.00093 19.1 3.1 27 539-565 3-29 (34)
376 PF10366 Vps39_1: Vacuolar sor 39.3 1.6E+02 0.0034 24.6 7.2 26 540-565 42-67 (108)
377 PF11848 DUF3368: Domain of un 39.0 1.1E+02 0.0024 21.2 5.3 33 267-299 12-44 (48)
378 PF08424 NRDE-2: NRDE-2, neces 37.8 4.5E+02 0.0097 26.6 18.3 117 345-463 49-185 (321)
379 PF07575 Nucleopor_Nup85: Nup8 36.9 1.6E+02 0.0034 32.7 8.9 134 430-580 403-538 (566)
380 PF11846 DUF3366: Domain of un 36.4 1.6E+02 0.0034 27.3 7.7 31 464-494 141-171 (193)
381 KOG4507 Uncharacterized conser 36.3 2.9E+02 0.0064 30.3 10.0 59 332-391 647-705 (886)
382 PF11848 DUF3368: Domain of un 36.1 1.3E+02 0.0028 20.9 5.2 31 339-369 14-44 (48)
383 PF09670 Cas_Cas02710: CRISPR- 36.1 5.2E+02 0.011 26.9 12.6 56 265-321 139-198 (379)
384 PF14689 SPOB_a: Sensor_kinase 35.9 69 0.0015 23.6 4.1 20 333-352 29-48 (62)
385 PF10366 Vps39_1: Vacuolar sor 35.8 1.6E+02 0.0035 24.5 6.8 26 435-460 42-67 (108)
386 PF07575 Nucleopor_Nup85: Nup8 35.6 3.8E+02 0.0082 29.7 11.7 11 169-179 161-171 (566)
387 KOG1920 IkappaB kinase complex 35.6 8.6E+02 0.019 29.3 28.4 82 473-563 971-1052(1265)
388 KOG4077 Cytochrome c oxidase, 35.5 2.3E+02 0.0049 24.5 7.4 42 348-389 70-111 (149)
389 TIGR02508 type_III_yscG type I 34.3 2.7E+02 0.0058 23.1 9.2 84 237-331 21-106 (115)
390 cd08819 CARD_MDA5_2 Caspase ac 34.2 2.4E+02 0.0053 22.5 7.2 65 486-556 21-85 (88)
391 COG0790 FOG: TPR repeat, SEL1 33.2 4.8E+02 0.01 25.6 24.5 150 270-428 54-222 (292)
392 cd08819 CARD_MDA5_2 Caspase ac 33.2 2.3E+02 0.005 22.7 6.7 34 305-343 49-82 (88)
393 COG5108 RPO41 Mitochondrial DN 33.1 2.6E+02 0.0057 31.1 9.2 47 262-308 33-81 (1117)
394 KOG1464 COP9 signalosome, subu 33.1 4.9E+02 0.011 25.7 17.5 201 322-523 21-252 (440)
395 KOG4507 Uncharacterized conser 33.0 2.4E+02 0.0052 31.0 8.8 88 478-566 618-705 (886)
396 PF10475 DUF2450: Protein of u 32.8 4.6E+02 0.0099 26.2 10.8 114 263-387 104-222 (291)
397 PF04190 DUF410: Protein of un 32.7 4.8E+02 0.01 25.5 17.8 163 408-585 1-205 (260)
398 COG0735 Fur Fe2+/Zn2+ uptake r 31.7 2.5E+02 0.0055 24.7 7.8 63 244-307 8-70 (145)
399 COG5108 RPO41 Mitochondrial DN 31.3 2.8E+02 0.006 31.0 9.0 75 297-374 33-115 (1117)
400 PF11663 Toxin_YhaV: Toxin wit 31.0 50 0.0011 28.7 2.9 21 271-291 109-129 (140)
401 PRK10564 maltose regulon perip 30.7 1.1E+02 0.0024 30.6 5.6 28 332-359 262-289 (303)
402 PF08311 Mad3_BUB1_I: Mad3/BUB 30.5 3.5E+02 0.0075 23.2 9.3 43 275-317 81-124 (126)
403 PF11838 ERAP1_C: ERAP1-like C 30.2 5.6E+02 0.012 25.5 18.3 78 345-425 148-229 (324)
404 KOG0890 Protein kinase of the 30.0 1.4E+03 0.03 30.0 22.0 304 262-577 1388-1709(2382)
405 PRK11639 zinc uptake transcrip 29.7 2.7E+02 0.0058 25.3 7.8 59 248-307 17-75 (169)
406 PRK08691 DNA polymerase III su 27.7 6.2E+02 0.013 28.9 11.4 84 238-324 181-277 (709)
407 KOG1498 26S proteasome regulat 27.6 7.3E+02 0.016 26.0 17.0 90 471-567 135-242 (439)
408 smart00386 HAT HAT (Half-A-TPR 27.5 1.4E+02 0.003 17.6 4.0 28 516-544 1-28 (33)
409 PF11663 Toxin_YhaV: Toxin wit 26.8 56 0.0012 28.4 2.5 29 516-546 109-137 (140)
410 PF14689 SPOB_a: Sensor_kinase 26.8 97 0.0021 22.8 3.5 24 542-565 28-51 (62)
411 PF00244 14-3-3: 14-3-3 protei 26.7 5.8E+02 0.013 24.6 10.2 163 333-495 7-197 (236)
412 KOG2659 LisH motif-containing 26.1 5.9E+02 0.013 24.4 10.1 65 253-319 22-91 (228)
413 PF12862 Apc5: Anaphase-promot 25.7 3.5E+02 0.0075 21.6 7.2 53 302-355 8-69 (94)
414 PRK08691 DNA polymerase III su 25.6 9.1E+02 0.02 27.6 12.2 45 449-495 181-226 (709)
415 PF05542 DUF760: Protein of un 25.5 73 0.0016 25.3 2.9 32 35-76 1-32 (86)
416 PF08311 Mad3_BUB1_I: Mad3/BUB 25.5 4.3E+02 0.0093 22.6 8.5 42 450-491 81-123 (126)
417 PF11817 Foie-gras_1: Foie gra 25.0 3.2E+02 0.0069 26.5 7.9 58 366-423 182-244 (247)
418 PRK14956 DNA polymerase III su 24.8 9.1E+02 0.02 26.2 12.2 32 329-360 250-281 (484)
419 KOG0403 Neoplastic transformat 24.7 8.7E+02 0.019 25.9 19.3 62 505-567 512-573 (645)
420 PF14669 Asp_Glu_race_2: Putat 24.5 5.9E+02 0.013 23.9 16.8 67 252-318 3-77 (233)
421 PF01347 Vitellogenin_N: Lipop 24.5 1E+03 0.022 26.5 21.9 65 396-461 503-569 (618)
422 PRK14958 DNA polymerase III su 24.5 9.5E+02 0.021 26.2 13.1 44 241-286 184-227 (509)
423 KOG4567 GTPase-activating prot 24.4 7.5E+02 0.016 25.0 10.0 57 277-338 263-319 (370)
424 PF14669 Asp_Glu_race_2: Putat 24.4 5.9E+02 0.013 23.8 14.7 58 505-562 135-206 (233)
425 PRK14951 DNA polymerase III su 24.3 9.9E+02 0.022 26.8 12.3 43 450-494 187-230 (618)
426 KOG2062 26S proteasome regulat 24.3 1.1E+03 0.024 26.9 16.6 268 237-516 39-336 (929)
427 KOG4642 Chaperone-dependent E3 24.2 6.7E+02 0.015 24.4 11.0 119 406-528 19-143 (284)
428 PRK13342 recombination factor 23.9 8.6E+02 0.019 25.6 19.4 34 410-443 243-276 (413)
429 PRK07003 DNA polymerase III su 23.8 1.1E+03 0.024 27.3 12.4 42 242-285 185-226 (830)
430 PRK14963 DNA polymerase III su 23.7 9.6E+02 0.021 26.2 11.9 45 449-495 178-223 (504)
431 PF11768 DUF3312: Protein of u 23.7 9.2E+02 0.02 26.4 11.3 24 401-424 412-435 (545)
432 KOG1464 COP9 signalosome, subu 23.7 7.2E+02 0.016 24.6 24.6 185 270-455 40-254 (440)
433 PRK11639 zinc uptake transcrip 23.7 4.1E+02 0.0089 24.0 7.8 60 283-343 17-76 (169)
434 PF15358 TSKS: Testis-specific 23.2 3E+02 0.0064 28.6 7.1 69 43-117 288-358 (558)
435 PRK14958 DNA polymerase III su 22.6 1E+03 0.022 26.0 12.7 34 460-495 193-226 (509)
436 PHA03100 ankyrin repeat protei 22.3 6.8E+02 0.015 26.6 10.7 19 203-221 44-62 (480)
437 KOG1112 Ribonucleotide reducta 22.3 71 0.0015 33.9 2.7 20 35-54 677-696 (796)
438 KOG3807 Predicted membrane pro 22.3 8.4E+02 0.018 24.9 14.0 165 225-404 188-354 (556)
439 KOG2396 HAT (Half-A-TPR) repea 21.9 1E+03 0.023 25.8 22.8 98 430-530 457-558 (568)
440 PRK13342 recombination factor 21.5 9.6E+02 0.021 25.2 20.1 104 359-481 173-279 (413)
441 KOG0376 Serine-threonine phosp 21.1 1.8E+02 0.0038 31.1 5.3 105 299-408 11-116 (476)
442 PF09454 Vps23_core: Vps23 cor 20.9 2.1E+02 0.0045 21.5 4.3 42 259-301 10-51 (65)
443 COG2812 DnaX DNA polymerase II 20.9 7.8E+02 0.017 26.9 10.3 49 237-287 180-228 (515)
444 KOG2297 Predicted translation 20.8 8.8E+02 0.019 24.5 20.9 170 291-487 164-341 (412)
445 PF01347 Vitellogenin_N: Lipop 20.5 1.2E+03 0.026 25.9 22.0 47 203-249 357-405 (618)
446 COG1043 LpxA Acyl-[acyl carrie 20.4 82 0.0018 30.3 2.5 25 55-79 229-253 (260)
447 PRK10941 hypothetical protein; 20.4 8.4E+02 0.018 24.1 11.2 58 367-425 186-243 (269)
448 PF02847 MA3: MA3 domain; Int 20.2 1.8E+02 0.0039 24.0 4.5 72 506-578 6-78 (113)
449 PF11817 Foie-gras_1: Foie gra 20.1 4.4E+02 0.0096 25.5 7.8 58 401-458 182-244 (247)
450 PRK06645 DNA polymerase III su 20.0 1E+03 0.023 25.9 11.2 44 239-284 191-234 (507)
451 PF09454 Vps23_core: Vps23 cor 20.0 2E+02 0.0043 21.5 4.1 10 483-492 24-33 (65)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.3e-56 Score=506.69 Aligned_cols=412 Identities=19% Similarity=0.242 Sum_probs=386.0
Q ss_pred HHHHHhhcccccCCC-CCCCCcchHHHHHHHHccc-ccCCchhHHHHHHhhcCCCHhhHHHHHHHH-HhhCHHHHHHHHH
Q 007695 169 AEKIHERGEMILPEE-PKPITGKCKLITDKILSLE-KEEDPSPLLAEWKELLQPSRIDWINLLDRL-REQNTQLYFKVAE 245 (592)
Q Consensus 169 ~~~~~ea~~~f~~~~-~~~~~~~~~~~~~~l~~~~-~~g~~~~A~~~~~~~~~p~~~t~~~lL~~~-~~~~~~~~~~~~~ 245 (592)
.|++.+|..+|..+. ...+.|+ ..++..++..+ +.|.+++|+.+|+.|..||..+|+.+|.+| ..++.+.+.+++.
T Consensus 383 ~G~l~eAl~Lfd~M~~~gvv~~~-~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~ 461 (1060)
T PLN03218 383 DGRIKDCIDLLEDMEKRGLLDMD-KIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLR 461 (1060)
T ss_pred CcCHHHHHHHHHHHHhCCCCCch-HHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 367889999983222 2444555 34455666666 899999999999999999999999999999 5566888888888
Q ss_pred HHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 007695 246 LVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQP 325 (592)
Q Consensus 246 ~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p 325 (592)
.+. +.|+.||..+|+.||.+|++.|+++.|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|+.|.+.|+.|
T Consensus 462 ~M~-~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~P 540 (1060)
T PLN03218 462 LVQ-EAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKP 540 (1060)
T ss_pred HHH-HcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCC
Confidence 765 5789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCchHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 007695 326 DKKVYNSMIMAYVNAGQPKLGMSLVDMMIT--SGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLL 403 (592)
Q Consensus 326 d~~t~~~li~a~~~~g~~~~A~~l~~~m~~--~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L 403 (592)
|..+|+.||.+|++.|++++|.++|.+|.. .|+.||..+|+++|.+|++.|++++|.++|+.|.+.|+.|+..+|+.+
T Consensus 541 D~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsL 620 (1060)
T PLN03218 541 DRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIA 620 (1060)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHH
Confidence 999999999999999999999999999986 679999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 007695 404 VEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLI 483 (592)
Q Consensus 404 i~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~ 483 (592)
|.+|++.|++++|..+|++|...|+.||..+|+.+|.+|++.|++++|.++|+.|.+.|+.||..+|+++|.+|++.|++
T Consensus 621 I~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~ 700 (1060)
T PLN03218 621 VNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNW 700 (1060)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 007695 484 NEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLM 563 (592)
Q Consensus 484 ~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m 563 (592)
++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|...|..||..+|+.++.+|++.|+.++|.++|++|
T Consensus 701 eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M 780 (1060)
T PLN03218 701 KKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQA 780 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHhhh
Q 007695 564 EAQGFAASERLKVALISSQ 582 (592)
Q Consensus 564 ~~~g~~pd~~~~~~l~~~~ 582 (592)
.+.|+.||..++..++..|
T Consensus 781 ~k~Gi~pd~~tynsLIglc 799 (1060)
T PLN03218 781 KEDGIKPNLVMCRCITGLC 799 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHH
Confidence 9999999996666666543
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.2e-53 Score=485.78 Aligned_cols=389 Identities=19% Similarity=0.261 Sum_probs=361.5
Q ss_pred chHHHHHHHHcccccCCchhHHHHHHhhcC-----CCHhhHHHHHHHHH-hhCHHHHHHHHHHHhhhCCCCCCHHHHHHH
Q 007695 190 KCKLITDKILSLEKEEDPSPLLAEWKELLQ-----PSRIDWINLLDRLR-EQNTQLYFKVAELVLSEESFQTNVRDYSKL 263 (592)
Q Consensus 190 ~~~~~~~~l~~~~~~g~~~~A~~~~~~~~~-----p~~~t~~~lL~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~y~~L 263 (592)
+...+...+..+.+.|++.+|+++|++|.+ ++..+++.++.++. .+....+..+++.+. .||..+|+.+
T Consensus 369 ~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~-----~pd~~Tyn~L 443 (1060)
T PLN03218 369 KSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR-----NPTLSTFNML 443 (1060)
T ss_pred CchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC-----CCCHHHHHHH
Confidence 344455555556699999999999999954 45556667777774 455777777766553 3999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCc
Q 007695 264 IDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQP 343 (592)
Q Consensus 264 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~ 343 (592)
|.+|++.|+++.|.++|+.|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++
T Consensus 444 L~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007695 344 KLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRI--EEFQPTLESCTLLVEAYGQAGDPDQARSNFD 421 (592)
Q Consensus 344 ~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~--~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~ 421 (592)
++|.++|++|...|+.||..+|+.+|.+|++.|++++|.++|.+|.. .|+.||..+|+++|.+|++.|++++|.++|+
T Consensus 524 eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~ 603 (1060)
T PLN03218 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999986 6789999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 007695 422 YMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPP 501 (592)
Q Consensus 422 ~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 501 (592)
.|.+.|+.|+..+|+.+|.+|++.|++++|..+|++|.+.|+.||..||+++|.+|++.|++++|.+++++|.+.|+.|+
T Consensus 604 ~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd 683 (1060)
T PLN03218 604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLG 683 (1060)
T ss_pred HHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHhh
Q 007695 502 FKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581 (592)
Q Consensus 502 ~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~l~~~ 581 (592)
..+|++||.+|++.|++++|.++|++|...+..|+..+|+.||.+|++.|++++|.++|++|...|+.||..++..++.+
T Consensus 684 ~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a 763 (1060)
T PLN03218 684 TVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVA 763 (1060)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999555555554
Q ss_pred hh
Q 007695 582 QT 583 (592)
Q Consensus 582 ~~ 583 (592)
+.
T Consensus 764 ~~ 765 (1060)
T PLN03218 764 SE 765 (1060)
T ss_pred HH
Confidence 44
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=5.9e-52 Score=477.86 Aligned_cols=375 Identities=16% Similarity=0.199 Sum_probs=331.6
Q ss_pred HHHHHHccc-ccCCchhHHHHHHhhcCCCHhhHHHHHHHH-HhhCHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcC
Q 007695 194 ITDKILSLE-KEEDPSPLLAEWKELLQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKEN 271 (592)
Q Consensus 194 ~~~~l~~~~-~~g~~~~A~~~~~~~~~p~~~t~~~lL~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g 271 (592)
+++.|+..| +.|++++|..+|++|..||.++||++|.++ ..+...++..++..|. ..|+.||..+|+.+|.+|++.|
T Consensus 224 ~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~-~~g~~Pd~~ty~~ll~a~~~~g 302 (857)
T PLN03077 224 VVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMR-ELSVDPDLMTITSVISACELLG 302 (857)
T ss_pred hHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHH-HcCCCCChhHHHHHHHHHHhcC
Confidence 456667666 999999999999999999999999999999 5677888999998876 5689999999999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHH
Q 007695 272 CLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVD 351 (592)
Q Consensus 272 ~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~ 351 (592)
+++.|.+++..|.+.|+.||..+||+||.+|++.|++++|.++|++|. .||..+||++|.+|++.|++++|+++|+
T Consensus 303 ~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~ 378 (857)
T PLN03077 303 DERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYA 378 (857)
T ss_pred ChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999997 6899999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 007695 352 MMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD 431 (592)
Q Consensus 352 ~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd 431 (592)
+|.+.|+.||..||+.++.+|++.|+++.|.+++..+.+.|+.|+..+|++||.+|++.|++++|.++|++|.. +|
T Consensus 379 ~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d 454 (857)
T PLN03077 379 LMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KD 454 (857)
T ss_pred HHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999965 78
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 007695 432 DRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDM 511 (592)
Q Consensus 432 ~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~ 511 (592)
.++|+.+|.+|++.|+.++|+.+|++|.. ++.||..||++++.+|++.|.++.+.+++..+.+.|+.++..++++|+++
T Consensus 455 ~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~ 533 (857)
T PLN03077 455 VISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDL 533 (857)
T ss_pred eeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHH
Confidence 89999999999999999999999999975 58999999999999999999988888888888888887777777777777
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHhhhh
Q 007695 512 YARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQT 583 (592)
Q Consensus 512 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~l~~~~~ 583 (592)
|+++|++++|.++|+.+ .+|..+||.+|.+|++.|+.++|+++|++|.+.|+.||..++..++.++.
T Consensus 534 y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~ 600 (857)
T PLN03077 534 YVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACS 600 (857)
T ss_pred HHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHh
Confidence 77777777777766665 34666677777777777777777777777777777777755555444443
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.2e-49 Score=448.51 Aligned_cols=372 Identities=18% Similarity=0.250 Sum_probs=274.1
Q ss_pred CCCcchHHHHHHHHccc-ccCCchhHHHHHHhhcCCCHhhHHHHHHHH-HhhCHHHHHHHHHHHhhhCCCCCCHHHHHHH
Q 007695 186 PITGKCKLITDKILSLE-KEEDPSPLLAEWKELLQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKL 263 (592)
Q Consensus 186 ~~~~~~~~~~~~l~~~~-~~g~~~~A~~~~~~~~~p~~~t~~~lL~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~L 263 (592)
++.++ ...++.++..| +.|+++.|+++|++|.+||.++||+++.++ ..+..+.+..+++.+. +.|+.|+..+|+.+
T Consensus 153 g~~~~-~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~-~~g~~p~~~t~~~l 230 (697)
T PLN03081 153 GFEPD-QYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMW-EDGSDAEPRTFVVM 230 (697)
T ss_pred CCCcc-hHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHH-HhCCCCChhhHHHH
Confidence 34444 34556666666 899999999999999999999999999988 5566888888888876 34677777777777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCc
Q 007695 264 IDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQP 343 (592)
Q Consensus 264 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~ 343 (592)
+.+|++.|..+.+.+++..+.+.|+.||..+|++||++|++.|++++|.++|+.|. .+|+.+||+||.+|++.|++
T Consensus 231 l~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~ 306 (697)
T PLN03081 231 LRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYS 306 (697)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCH
Confidence 77777777777777777777777777777777777777777777777777777776 45777777777777777777
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007695 344 KLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM 423 (592)
Q Consensus 344 ~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m 423 (592)
++|.++|++|.+.|+.||..||++++.+|++.|++++|.+++..|.+.|+.||..+|++||.+|++.|++++|.++|++|
T Consensus 307 ~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m 386 (697)
T PLN03081 307 EEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM 386 (697)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhC
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCCCH
Q 007695 424 IRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE-LGEAPPF 502 (592)
Q Consensus 424 ~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~ 502 (592)
.+ ||..+||+||.+|++.|+.++|+++|++|.+.|+.||..||++++.+|++.|.+++|.++|+.|.+ .|+.|+.
T Consensus 387 ~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~ 462 (697)
T PLN03081 387 PR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRA 462 (697)
T ss_pred CC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCc
Confidence 53 677777777777777777777777777777777777777777777777777777777777777764 4677777
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH
Q 007695 503 KIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASE 572 (592)
Q Consensus 503 ~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~g~~pd~ 572 (592)
.+|+.++++|++.|++++|.++++.| +..|+..+|++|+.+|...|+.+.|..+++++. ++.|+.
T Consensus 463 ~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~--~~~p~~ 527 (697)
T PLN03081 463 MHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLY--GMGPEK 527 (697)
T ss_pred cchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHh--CCCCCC
Confidence 77777777777777777777776654 355666667777777777777777766666664 345543
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.4e-49 Score=456.15 Aligned_cols=379 Identities=18% Similarity=0.220 Sum_probs=357.1
Q ss_pred HHHHHHccc-ccCCchhHHHHHHhhcCCCHhhHHHHHHHH-HhhCHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcC
Q 007695 194 ITDKILSLE-KEEDPSPLLAEWKELLQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKEN 271 (592)
Q Consensus 194 ~~~~l~~~~-~~g~~~~A~~~~~~~~~p~~~t~~~lL~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g 271 (592)
+.+.++..| +.|+++.|+++|++|.+||.++||++|.++ ..+..+.+..++..+.. .|+.||..||+.+|.+|++.+
T Consensus 123 ~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~-~g~~Pd~~t~~~ll~~~~~~~ 201 (857)
T PLN03077 123 LGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLW-AGVRPDVYTFPCVLRTCGGIP 201 (857)
T ss_pred HHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCChhHHHHHHHHhCCcc
Confidence 556777777 999999999999999999999999999999 56678999999998864 589999999999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHH
Q 007695 272 CLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVD 351 (592)
Q Consensus 272 ~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~ 351 (592)
++..+.+++..|.+.|+.||..+||+||.+|++.|+++.|.++|++|. .||..+||+||.+|++.|++++|+++|.
T Consensus 202 ~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~ 277 (857)
T PLN03077 202 DLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFF 277 (857)
T ss_pred chhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998 6799999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 007695 352 MMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD 431 (592)
Q Consensus 352 ~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd 431 (592)
+|...|+.||..||+.++.+|++.|+.+.|.+++..|.+.|+.||..+||+||.+|++.|++++|.++|++|.. ||
T Consensus 278 ~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d 353 (857)
T PLN03077 278 TMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KD 353 (857)
T ss_pred HHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999964 89
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 007695 432 DRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDM 511 (592)
Q Consensus 432 ~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~ 511 (592)
..+|+.+|.+|++.|++++|+.+|++|.+.|+.||..||++++.+|++.|+++.|.++++.+.+.|+.|+..+|++|+++
T Consensus 354 ~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~ 433 (857)
T PLN03077 354 AVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEM 433 (857)
T ss_pred eeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHhhhhhcc
Q 007695 512 YARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASE-RLKVALISSQTFNR 586 (592)
Q Consensus 512 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~g~~pd~-~~~~~l~~~~~~~~ 586 (592)
|+++|++++|.++|++|.+ ++..+|+.+|.+|++.|+.++|+++|++|.. ++.||. ++...+-+|+..+.
T Consensus 434 y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~ 504 (857)
T PLN03077 434 YSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGA 504 (857)
T ss_pred HHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhch
Confidence 9999999999999999954 4667899999999999999999999999986 699999 55555555554443
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1e-48 Score=440.90 Aligned_cols=396 Identities=16% Similarity=0.206 Sum_probs=352.9
Q ss_pred CCCCCCccHHHH------HHHHHhhcccccCC-CCCCCCcchHHHHHHHHc-ccccCCchhHHHHHHhh----cCCCHhh
Q 007695 157 GLDLSDPKWTEV------AEKIHERGEMILPE-EPKPITGKCKLITDKILS-LEKEEDPSPLLAEWKEL----LQPSRID 224 (592)
Q Consensus 157 ~~~~~~~~~~~~------~~~~~ea~~~f~~~-~~~~~~~~~~~~~~~l~~-~~~~g~~~~A~~~~~~~----~~p~~~t 224 (592)
++.++...++.+ .|++.+|..+|..+ .++.++ ++.++. +.+.|++++|+++|++| ..||..|
T Consensus 153 g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t------~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t 226 (697)
T PLN03081 153 GFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLAS------WGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRT 226 (697)
T ss_pred CCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeee------HHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhh
Confidence 444444455555 45778888888322 123333 334554 55999999999999998 6799999
Q ss_pred HHHHHHHHHhh-CHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007695 225 WINLLDRLREQ-NTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYS 303 (592)
Q Consensus 225 ~~~lL~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~ 303 (592)
|+++|.++... ......++.. ...+.|+.||..+||.||.+|++.|++++|.++|+.|.. +|..+||+||.+|+
T Consensus 227 ~~~ll~a~~~~~~~~~~~~l~~-~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~ 301 (697)
T PLN03081 227 FVVMLRASAGLGSARAGQQLHC-CVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYA 301 (697)
T ss_pred HHHHHHHHhcCCcHHHHHHHHH-HHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHH
Confidence 99999999554 4444444444 445678999999999999999999999999999999964 69999999999999
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 007695 304 KAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQ 383 (592)
Q Consensus 304 ~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~ 383 (592)
+.|++++|.++|++|.+.|+.||..||++++.+|++.|++++|.+++..|.+.|+.||..+|++|+.+|++.|++++|.+
T Consensus 302 ~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~ 381 (697)
T PLN03081 302 LHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARN 381 (697)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CC
Q 007695 384 ITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEK-DG 462 (592)
Q Consensus 384 ~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~-~g 462 (592)
+|++|. .||..+||+||.+|++.|+.++|.++|++|...|+.||..||+.+|.+|++.|++++|.++|+.|.+ .|
T Consensus 382 vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g 457 (697)
T PLN03081 382 VFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHR 457 (697)
T ss_pred HHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcC
Confidence 999997 5899999999999999999999999999999999999999999999999999999999999999986 59
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 007695 463 FEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFER 542 (592)
Q Consensus 463 ~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 542 (592)
+.|+..+|++++++|++.|++++|.+++++| ++.|+..+|++|+.+|..+|+++.|..+++++.+.+ +.+..+|..
T Consensus 458 ~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~-p~~~~~y~~ 533 (697)
T PLN03081 458 IKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG-PEKLNNYVV 533 (697)
T ss_pred CCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC-CCCCcchHH
Confidence 9999999999999999999999999998865 578999999999999999999999999999987642 235678999
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCCC
Q 007695 543 IINGLLAGGFLQDAQRVHGLMEAQGFAAS 571 (592)
Q Consensus 543 li~a~~~~g~~~~A~~l~~~m~~~g~~pd 571 (592)
|++.|++.|++++|.+++++|++.|++..
T Consensus 534 L~~~y~~~G~~~~A~~v~~~m~~~g~~k~ 562 (697)
T PLN03081 534 LLNLYNSSGRQAEAAKVVETLKRKGLSMH 562 (697)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCccC
Confidence 99999999999999999999999998644
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.91 E-value=2.1e-20 Score=217.20 Aligned_cols=363 Identities=13% Similarity=0.069 Sum_probs=260.5
Q ss_pred HHHccc-ccCCchhHHHHHHhhc--CC-CHhhHHHHHHHH-HhhCHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcC
Q 007695 197 KILSLE-KEEDPSPLLAEWKELL--QP-SRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKEN 271 (592)
Q Consensus 197 ~l~~~~-~~g~~~~A~~~~~~~~--~p-~~~t~~~lL~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g 271 (592)
.+..++ ..|++++|...|+++. .| +..++..+...+ ..++.+.+...+....... +.+...+..++..+.+.|
T Consensus 504 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~ 581 (899)
T TIGR02917 504 NLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN--PQEIEPALALAQYYLGKG 581 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchhHHHHHHHHHHHCC
Confidence 344444 6677777777776652 22 344444444444 4455666666666654432 345556667777777777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHH
Q 007695 272 CLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVD 351 (592)
Q Consensus 272 ~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~ 351 (592)
++++|..+++.+.... +.+..+|..+..+|...|++++|...|+.+.+.. +.+...+..+..+|.+.|++++|..+++
T Consensus 582 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 659 (899)
T TIGR02917 582 QLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLK 659 (899)
T ss_pred CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7777777777776642 3466777777788888888888888887777653 4456677777777778888888888887
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 007695 352 MMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD 431 (592)
Q Consensus 352 ~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd 431 (592)
++.+.. +.+..++..+...+...|++++|..+++.+.... +.+...+..+...+.+.|++++|...|+.+...+ |+
T Consensus 660 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~ 735 (899)
T TIGR02917 660 RALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PS 735 (899)
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CC
Confidence 777653 3356777777888888888888888888777665 5566777777888888888888888888877754 34
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 007695 432 DRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDM 511 (592)
Q Consensus 432 ~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~ 511 (592)
..++..+..++.+.|++++|...+..+.+.. +.+...+..+...|...|++++|...|+++.+.... +..+++.+...
T Consensus 736 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~ 813 (899)
T TIGR02917 736 SQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPD-NAVVLNNLAWL 813 (899)
T ss_pred chHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 4666677778888888888888888877653 456777788888888888888888888888876543 67788888888
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH
Q 007695 512 YARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASE 572 (592)
Q Consensus 512 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~g~~pd~ 572 (592)
+...|+ .+|...++++.... +-++..+..+...+...|++++|.++|+++.+.+.. +.
T Consensus 814 ~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~ 871 (899)
T TIGR02917 814 YLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AA 871 (899)
T ss_pred HHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-Ch
Confidence 888888 77888888877652 335667778888888999999999999999887543 44
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.91 E-value=1.3e-20 Score=218.81 Aligned_cols=381 Identities=13% Similarity=0.039 Sum_probs=318.5
Q ss_pred HHHHhhcccccCCCCCCCCcchHHHHHHHHccc-ccCCchhHHHHHHhhc--CC-CHhhHHHHHHHH-HhhCHHHHHHHH
Q 007695 170 EKIHERGEMILPEEPKPITGKCKLITDKILSLE-KEEDPSPLLAEWKELL--QP-SRIDWINLLDRL-REQNTQLYFKVA 244 (592)
Q Consensus 170 ~~~~ea~~~f~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~A~~~~~~~~--~p-~~~t~~~lL~~~-~~~~~~~~~~~~ 244 (592)
|++.+|...| .......|........+..++ +.|+.++|+..|+++. .| +...+..+...+ ..++.+.+...+
T Consensus 513 g~~~~A~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 590 (899)
T TIGR02917 513 GNPDDAIQRF--EKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAIL 590 (899)
T ss_pred CCHHHHHHHH--HHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHH
Confidence 3455555555 111112233333445555556 8999999999999873 33 344555666665 567788888888
Q ss_pred HHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 007695 245 ELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQ 324 (592)
Q Consensus 245 ~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~ 324 (592)
+.+... .+.+...|..+...+.+.|++++|...|+.+.+.. +.+...+..+..+|.+.|++++|..+|+++.+.. +
T Consensus 591 ~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~ 666 (899)
T TIGR02917 591 NEAADA--APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-P 666 (899)
T ss_pred HHHHHc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-C
Confidence 887653 35678889999999999999999999999998864 3367789999999999999999999999998764 5
Q ss_pred CCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007695 325 PDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLV 404 (592)
Q Consensus 325 pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li 404 (592)
.+..++..+...+...|++++|..+++.+.+.+ +.+...+..+...+.+.|++++|...|..+...+ |+..++..++
T Consensus 667 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~ 743 (899)
T TIGR02917 667 DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLH 743 (899)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHH
Confidence 568899999999999999999999999999875 4578889999999999999999999999999874 5557888899
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 007695 405 EAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLIN 484 (592)
Q Consensus 405 ~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~ 484 (592)
.++.+.|++++|...++.+....+ .+...+..+...|...|++++|..+|+++.+.. +.+...+..+...+...|+ .
T Consensus 744 ~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~ 820 (899)
T TIGR02917 744 RALLASGNTAEAVKTLEAWLKTHP-NDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-P 820 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-H
Confidence 999999999999999999998654 478888999999999999999999999998865 4678889999999999999 8
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 007695 485 EAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLME 564 (592)
Q Consensus 485 ~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~ 564 (592)
+|...++++...... +..++..+...+...|++++|..+|+++.+.+.. ++.++..+..++.+.|+.++|.+++++|+
T Consensus 821 ~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 821 RALEYAEKALKLAPN-IPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 899999999886544 6678888999999999999999999999987543 88899999999999999999999999986
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.87 E-value=5.2e-19 Score=186.29 Aligned_cols=303 Identities=15% Similarity=0.087 Sum_probs=251.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHc
Q 007695 264 IDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPD---KKVYNSMIMAYVNA 340 (592)
Q Consensus 264 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd---~~t~~~li~a~~~~ 340 (592)
...+...|++++|...|.++.+.+. .+..++..+...+...|++++|..+++.+...+..++ ..++..+...|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 4456788999999999999998742 3667899999999999999999999999987532221 35688899999999
Q ss_pred CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCCHHHH
Q 007695 341 GQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT----LESCTLLVEAYGQAGDPDQA 416 (592)
Q Consensus 341 g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~Li~~~~~~g~~~~A 416 (592)
|++++|..+|.++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 99999999999998753 44788999999999999999999999999987653222 23456788889999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007695 417 RSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496 (592)
Q Consensus 417 ~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 496 (592)
...|+++.+... .+...+..+...|.+.|++++|..+|+++.+.+......+++.++.+|...|++++|...++++.+.
T Consensus 200 ~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 200 RALLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999987543 2456778888999999999999999999987542223467888999999999999999999999876
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCCCCHH
Q 007695 497 GEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLA---GGFLQDAQRVHGLMEAQGFAASER 573 (592)
Q Consensus 497 g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~---~g~~~~A~~l~~~m~~~g~~pd~~ 573 (592)
. |+...+..++..+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.++++.++++|.+.++.|++.
T Consensus 279 ~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 279 Y--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred C--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 4 55566788999999999999999999988775 5777788888877664 568999999999999998888874
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.86 E-value=2.5e-18 Score=181.10 Aligned_cols=298 Identities=17% Similarity=0.158 Sum_probs=241.4
Q ss_pred HhhCHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHH
Q 007695 233 REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPD---IVTSTVLVHMYSKAGNLD 309 (592)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd---~~~~~~Li~~~~~~g~~~ 309 (592)
..++.+.+...+..++... +.+..++..+...+.+.|++++|..+++.+...+..++ ..++..+...|.+.|+++
T Consensus 47 ~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred hcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 4444555555555555431 34556788899999999999999999999987632222 356788899999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhCCCHHHHHHHH
Q 007695 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERS----EEIYLALLRSFAQCGDVRGAGQIT 385 (592)
Q Consensus 310 ~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~Ll~~~~~~g~~~~A~~~~ 385 (592)
+|..+|+++.+.. +++..+++.++..+.+.|++++|.+.++.+...+..++ ...+..+...+.+.|++++|...|
T Consensus 125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999998753 55778999999999999999999999999988654332 224566778889999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 007695 386 NIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEP 465 (592)
Q Consensus 386 ~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p 465 (592)
+++.+.. +.+...+..+...|.+.|++++|..+|+++...+......+++.++.+|...|++++|...++.+.+. .|
T Consensus 204 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p 280 (389)
T PRK11788 204 KKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YP 280 (389)
T ss_pred HHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC
Confidence 9998765 45577888899999999999999999999987544333567888999999999999999999998875 46
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHcCCCCCHH
Q 007695 466 GPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYAR---AGIEKKALQALGFLEAKKEQMGPD 538 (592)
Q Consensus 466 ~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~ 538 (592)
+...+..++..+.+.|++++|..+++++.+. .|+...++.++..+.. .|+..++..+++.+.+++..|+|.
T Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 281 GADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 7677788999999999999999999998875 5788888888887775 568999999999998877766665
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.79 E-value=2.5e-15 Score=167.53 Aligned_cols=330 Identities=10% Similarity=0.021 Sum_probs=256.0
Q ss_pred HHHHHHcccccCCchhHHHHHHhh----cCCCHhhHHHHHHHHHhhCHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHH
Q 007695 194 ITDKILSLEKEEDPSPLLAEWKEL----LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAK 269 (592)
Q Consensus 194 ~~~~l~~~~~~g~~~~A~~~~~~~----~~p~~~t~~~lL~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~ 269 (592)
+...+....+.|++++|+.+++.. +.+....+...+..+..++.+.+...++...... +.+...+..+...+.+
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~--P~~~~a~~~la~~l~~ 122 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN--VCQPEDVLLVASVLLK 122 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHH
Confidence 334444555899999999998776 2333333444444457788888999888887643 3456678888899999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHH
Q 007695 270 ENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSL 349 (592)
Q Consensus 270 ~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l 349 (592)
.|++++|...|+++.+.. +.+...+..+...+...|++++|...++.+.... +.+...+..+ ..+...|++++|...
T Consensus 123 ~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 123 SKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred cCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHH
Confidence 999999999999998863 2357788889999999999999999999887653 2334444343 347889999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHH
Q 007695 350 VDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQ----ARSNFDYMIR 425 (592)
Q Consensus 350 ~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~----A~~lf~~m~~ 425 (592)
++.+......++...+..+..++.+.|++++|...++...... +.+...+..+...|...|++++ |...|++...
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 9998876544455566667788899999999999999998775 5568888889999999999985 7999999888
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHH
Q 007695 426 LGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQ 505 (592)
Q Consensus 426 ~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~ 505 (592)
..+. +...+..+...+...|++++|...+++..... +.+...+..+..++.+.|++++|...++.+...... +...+
T Consensus 279 l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~-~~~~~ 355 (656)
T PRK15174 279 FNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV-TSKWN 355 (656)
T ss_pred hCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-chHHH
Confidence 5443 56788888999999999999999999988753 234566777888999999999999999998876433 33444
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 007695 506 VSLCDMYARAGIEKKALQALGFLEAKK 532 (592)
Q Consensus 506 ~~Li~~~~~~g~~~~A~~~~~~m~~~~ 532 (592)
..+..++...|+.++|...|++..+..
T Consensus 356 ~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 356 RYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 556778889999999999999887753
No 12
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.78 E-value=1.7e-14 Score=160.90 Aligned_cols=357 Identities=12% Similarity=0.022 Sum_probs=271.4
Q ss_pred ccCCchhHHHHHHhh--cCCCHhhHHHHHHHH-HhhCHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007695 203 KEEDPSPLLAEWKEL--LQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERI 279 (592)
Q Consensus 203 ~~g~~~~A~~~~~~~--~~p~~~t~~~lL~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l 279 (592)
+.|++++|+..|++. ..|+...|..+-.++ ..++.+.+...+...+... +.+...|..+..+|...|++++|..-
T Consensus 139 ~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~--p~~~~a~~~~a~a~~~lg~~~eA~~~ 216 (615)
T TIGR00990 139 RNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD--PDYSKALNRRANAYDGLGKYADALLD 216 (615)
T ss_pred HcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 889999999999887 567777776666665 6677888888887776532 34566788888999999999999876
Q ss_pred HHHHHHCCCC----------------------------C-CHHHHHHH------------------------------HH
Q 007695 280 LKKMNENGIV----------------------------P-DIVTSTVL------------------------------VH 300 (592)
Q Consensus 280 ~~~m~~~g~~----------------------------p-d~~~~~~L------------------------------i~ 300 (592)
|......+.. | +...+..+ +.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (615)
T TIGR00990 217 LTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQ 296 (615)
T ss_pred HHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHH
Confidence 6544322100 0 00000000 00
Q ss_pred HH------HHcCCHHHHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007695 301 MY------SKAGNLDRAKEAFESLRSHG-F-QPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372 (592)
Q Consensus 301 ~~------~~~g~~~~A~~~~~~m~~~g-~-~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~ 372 (592)
.+ ...+++++|.+.|+.....+ . +.+...|+.+...+...|++++|+..|++.++.. +-+..+|..+...+
T Consensus 297 l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~ 375 (615)
T TIGR00990 297 LGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMN 375 (615)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHH
Confidence 00 11257889999999998764 2 3345678888899999999999999999998753 22467888999999
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007695 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452 (592)
Q Consensus 373 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~ 452 (592)
...|++++|...|+...... +.+..+|..+...|...|++++|...|++.....+. +...+..+..++.+.|++++|+
T Consensus 376 ~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~ 453 (615)
T TIGR00990 376 LELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKEGSIASSM 453 (615)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999998775 556889999999999999999999999999886442 5667777888999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHH
Q 007695 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPF------KIQVSLCDMYARAGIEKKALQALG 526 (592)
Q Consensus 453 ~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~------~~~~~Li~~~~~~g~~~~A~~~~~ 526 (592)
..|++..+.. +-+...++.+...+...|++++|...|++........+. ..++.....+...|++++|..+++
T Consensus 454 ~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~ 532 (615)
T TIGR00990 454 ATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCE 532 (615)
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 9999987642 335788889999999999999999999998876432111 112222333445799999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 007695 527 FLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQ 566 (592)
Q Consensus 527 ~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~ 566 (592)
+....+ +.+...+..+...+.+.|++++|++.|++..+.
T Consensus 533 kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 533 KALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 987763 334557888999999999999999999998765
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.77 E-value=8.6e-15 Score=163.23 Aligned_cols=326 Identities=12% Similarity=0.015 Sum_probs=262.8
Q ss_pred HHHhhCHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 007695 231 RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310 (592)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~ 310 (592)
.+.++....+...+...+.... -+...+..++.++...|+++.|...|+++..... .+...+..+...+...|++++
T Consensus 52 ~~~~g~~~~A~~l~~~~l~~~p--~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P-~~~~a~~~la~~l~~~g~~~~ 128 (656)
T PRK15174 52 CLRKDETDVGLTLLSDRVLTAK--NGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNV-CQPEDVLLVASVLLKSKQYAT 128 (656)
T ss_pred HHhcCCcchhHHHhHHHHHhCC--CchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHH
Confidence 3466777788888887776543 3344556666777889999999999999998643 367788889999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 007695 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRI 390 (592)
Q Consensus 311 A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~ 390 (592)
|...|++..+.. +.+...+..+..++...|++++|...++.+...... +...+..+ ..+.+.|++++|...++.+..
T Consensus 129 Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~ 205 (656)
T PRK15174 129 VADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLP 205 (656)
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHh
Confidence 999999998763 456778899999999999999999999988775433 33344333 348889999999999999887
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHCCCCCC
Q 007695 391 EEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDK----ALNLLLELEKDGFEPG 466 (592)
Q Consensus 391 ~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~----A~~l~~~m~~~g~~p~ 466 (592)
..-.++...+..+...+.+.|++++|...|++.....+. +...+..+...|...|++++ |...|++..+.. +.+
T Consensus 206 ~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~ 283 (656)
T PRK15174 206 FFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDN 283 (656)
T ss_pred cCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCC
Confidence 643344555566678899999999999999999986543 56777888899999999986 899999988743 335
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007695 467 PATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIING 546 (592)
Q Consensus 467 ~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a 546 (592)
...+..+...+...|++++|...+++....... +...+..+..+|...|++++|...|+.+...+.. +...+..+..+
T Consensus 284 ~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~-~~~~~~~~a~a 361 (656)
T PRK15174 284 VRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREKGV-TSKWNRYAAAA 361 (656)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-chHHHHHHHHH
Confidence 678889999999999999999999999987654 6778888999999999999999999999875322 33344556778
Q ss_pred HHhCCCHHHHHHHHHHHHHC
Q 007695 547 LLAGGFLQDAQRVHGLMEAQ 566 (592)
Q Consensus 547 ~~~~g~~~~A~~l~~~m~~~ 566 (592)
+...|+.++|+..|++..+.
T Consensus 362 l~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 362 LLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHh
Confidence 99999999999999998865
No 14
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.76 E-value=1.3e-14 Score=172.25 Aligned_cols=387 Identities=13% Similarity=0.059 Sum_probs=231.6
Q ss_pred HHHHHhhcccccCCCCCCCCcchHHHHHHHHccc-ccCCchhHHHHHHhhc--CCCH---hhHHHHHH------------
Q 007695 169 AEKIHERGEMILPEEPKPITGKCKLITDKILSLE-KEEDPSPLLAEWKELL--QPSR---IDWINLLD------------ 230 (592)
Q Consensus 169 ~~~~~ea~~~f~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~A~~~~~~~~--~p~~---~t~~~lL~------------ 230 (592)
.|+..+|+..| ......+|....+...+..++ +.|++++|+..|++.. .|+. ..|..++.
T Consensus 282 ~g~~~~A~~~l--~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~ 359 (1157)
T PRK11447 282 SGQGGKAIPEL--QQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGD 359 (1157)
T ss_pred CCCHHHHHHHH--HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHH
Confidence 35667777777 222334444444555566555 8899999999998873 3432 22332221
Q ss_pred -HHHhhCHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 007695 231 -RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309 (592)
Q Consensus 231 -~~~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~ 309 (592)
.+..++.+.+...++..+... +.+...+..+...+...|++++|.+.|+++.+... .+...+..+...|. .++.+
T Consensus 360 ~~~~~g~~~eA~~~~~~Al~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~~-~~~~~ 435 (1157)
T PRK11447 360 AALKANNLAQAERLYQQARQVD--NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLANLYR-QQSPE 435 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH-hcCHH
Confidence 124567788888888877653 34566777888899999999999999999887532 23444544444442 23344
Q ss_pred HHHHHHHHHHhCCC--------CCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 007695 310 RAKEAFESLRSHGF--------QPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGA 381 (592)
Q Consensus 310 ~A~~~~~~m~~~g~--------~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A 381 (592)
+|..+++.+....- ......+..+...+...|++++|++.|++.++.... +...+..+...|.+.|++++|
T Consensus 436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A 514 (1157)
T PRK11447 436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQA 514 (1157)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHH
Confidence 44444443321100 000112233334444455555555555555443211 334444455555555555555
Q ss_pred HHHHHHHHHcCCCCCHHHHH--------------------------------------------HHHHHHHHcCCHHHHH
Q 007695 382 GQITNIMRIEEFQPTLESCT--------------------------------------------LLVEAYGQAGDPDQAR 417 (592)
Q Consensus 382 ~~~~~~m~~~g~~~~~~~~~--------------------------------------------~Li~~~~~~g~~~~A~ 417 (592)
...++.+.... +.+...+. .+...+...|+.++|.
T Consensus 515 ~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~ 593 (1157)
T PRK11447 515 DALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAE 593 (1157)
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHH
Confidence 55555544332 22222222 2334455566666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 007695 418 SNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497 (592)
Q Consensus 418 ~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g 497 (592)
.+++. ...+...+..+...+.+.|++++|+..|+...+.. +.+...+..+...+...|++++|.+.++.+....
T Consensus 594 ~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~ 667 (1157)
T PRK11447 594 ALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA 667 (1157)
T ss_pred HHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC
Confidence 65551 12344455667777888888888888888887753 3356777888888888888888888888777653
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--C---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-CCCCC
Q 007695 498 EAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQ--M---GPDDFERIINGLLAGGFLQDAQRVHGLMEA-QGFAA 570 (592)
Q Consensus 498 ~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~--~---~~~~~~~li~a~~~~g~~~~A~~l~~~m~~-~g~~p 570 (592)
.. +..++..+..++...|++++|.++++.+...... + +...+..+...+...|+.++|++.|++... .|+.|
T Consensus 668 p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~ 745 (1157)
T PRK11447 668 ND-SLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITP 745 (1157)
T ss_pred CC-ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Confidence 33 5566777778888888888888888887764321 1 123455567778888888888888887753 34543
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.74 E-value=4.1e-15 Score=152.35 Aligned_cols=370 Identities=14% Similarity=0.072 Sum_probs=289.5
Q ss_pred CCcchHHHHHHHHccc-ccCCchhHHHHHHhh--cCCC-HhhHHHHHHHH-HhhCHHHHHHHHHHHhhhCCCCCCHHH-H
Q 007695 187 ITGKCKLITDKILSLE-KEEDPSPLLAEWKEL--LQPS-RIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRD-Y 260 (592)
Q Consensus 187 ~~~~~~~~~~~l~~~~-~~g~~~~A~~~~~~~--~~p~-~~t~~~lL~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~-y 260 (592)
+.+.....+..+.+++ ..|++.+|+..++.+ .+|+ ...|.-+-.++ .+++.+.+.+.+...++ +.|+... .
T Consensus 111 ~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq---lnP~l~ca~ 187 (966)
T KOG4626|consen 111 KNPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ---LNPDLYCAR 187 (966)
T ss_pred ccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh---cCcchhhhh
Confidence 3444444556677777 689999999999988 4564 34466666666 56667777777666553 4565544 3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 007695 261 SKLIDAHAKENCLEDAERILKKMNENGIVPD-IVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVN 339 (592)
Q Consensus 261 ~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~ 339 (592)
+.+...+-..|++.+|..-|.+..+. .|. ...|+.|...+-.+|+.-.|++.|++..+.. +.-...|-.|...|..
T Consensus 188 s~lgnLlka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke 264 (966)
T KOG4626|consen 188 SDLGNLLKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKE 264 (966)
T ss_pred cchhHHHHhhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHH
Confidence 34444555678999999988888775 333 5568889999999999999999999988763 2336789999999999
Q ss_pred cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007695 340 AGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSN 419 (592)
Q Consensus 340 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~l 419 (592)
.+.++.|...|.+..... +-....|..+...|...|.++.|...|++..... +.-...|+.|..++-..|++.+|.+.
T Consensus 265 ~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~c 342 (966)
T KOG4626|consen 265 ARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDC 342 (966)
T ss_pred HhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHH
Confidence 999999999998887642 2246778888888999999999999999988764 33378999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 007695 420 FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPG-PATYTVLVDWLGRLQLINEAEQLLGKISELGE 498 (592)
Q Consensus 420 f~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~ 498 (592)
+++....... ...+.+.+...|...|.+++|..+|....+ +.|. ...++.|...|-.+|++++|...|++..+ +
T Consensus 343 YnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I 417 (966)
T KOG4626|consen 343 YNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--I 417 (966)
T ss_pred HHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--c
Confidence 9998875432 456677799999999999999999988776 4454 46788899999999999999999999887 4
Q ss_pred CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH
Q 007695 499 APP-FKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASE 572 (592)
Q Consensus 499 ~p~-~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~g~~pd~ 572 (592)
.|+ ...|+.+...|...|+++.|.+.+.+....+.. -.+.++.|...|...|+..+|++-|++.+. ++||.
T Consensus 418 ~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDf 489 (966)
T KOG4626|consen 418 KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDF 489 (966)
T ss_pred CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCC
Confidence 454 468899999999999999999999888765321 245788899999999999999999998875 57776
No 16
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.74 E-value=6.6e-14 Score=166.35 Aligned_cols=357 Identities=14% Similarity=0.094 Sum_probs=246.0
Q ss_pred ccCCchhHHHHHHhhc--CC-CHhhHHHHHHHH-HhhCHHHHHHHHHHHhhhCCCCCCHHHH------------HHHHHH
Q 007695 203 KEEDPSPLLAEWKELL--QP-SRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDY------------SKLIDA 266 (592)
Q Consensus 203 ~~g~~~~A~~~~~~~~--~p-~~~t~~~lL~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~y------------~~Li~~ 266 (592)
..|++++|+..|++.+ .| +...+..+-..+ ..++.+.+...++..+....-.++...+ ..+...
T Consensus 281 ~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~ 360 (1157)
T PRK11447 281 DSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDA 360 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHH
Confidence 6778888888887763 34 344444444444 5566777777777766543222222111 122345
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHH
Q 007695 267 HAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLG 346 (592)
Q Consensus 267 ~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A 346 (592)
+.+.|++++|...|+++.+... .+...+..+..++...|++++|.+.|++..+.. +.+...+..+...|. .++.++|
T Consensus 361 ~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A 437 (1157)
T PRK11447 361 ALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKA 437 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHH
Confidence 6677888888888888777632 356667777788888888888888888877653 334556666666664 4567777
Q ss_pred HHHHHHHHHCCC--------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007695 347 MSLVDMMITSGI--------ERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARS 418 (592)
Q Consensus 347 ~~l~~~m~~~g~--------~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~ 418 (592)
..+++.+..... ......+..+...+...|++++|...|++..+.. +-+...+..+...|.+.|++++|..
T Consensus 438 ~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~ 516 (1157)
T PRK11447 438 LAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADA 516 (1157)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 777765432210 0012234556677888999999999999999875 5567888899999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------------------------------------
Q 007695 419 NFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKD------------------------------------- 461 (592)
Q Consensus 419 lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~------------------------------------- 461 (592)
.|+++....+. +...+..+...+...++.++|+..++.+...
T Consensus 517 ~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~ 595 (1157)
T PRK11447 517 LMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEAL 595 (1157)
T ss_pred HHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHH
Confidence 99998875332 2222222222333444444444443332110
Q ss_pred --CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 007695 462 --GFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD 539 (592)
Q Consensus 462 --g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 539 (592)
..+.+...+..+...+.+.|++++|...|+++...... +...+..++..|...|++++|.+.++.+... .+.++..
T Consensus 596 l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~-~p~~~~~ 673 (1157)
T PRK11447 596 LRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKLPAT-ANDSLNT 673 (1157)
T ss_pred HHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-CCCChHH
Confidence 12345566777888899999999999999999987554 7888999999999999999999999988765 2335667
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 007695 540 FERIINGLLAGGFLQDAQRVHGLMEAQ 566 (592)
Q Consensus 540 ~~~li~a~~~~g~~~~A~~l~~~m~~~ 566 (592)
+..+..++...|++++|.++|+++...
T Consensus 674 ~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 674 QRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 777888999999999999999998865
No 17
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.70 E-value=1.2e-14 Score=148.97 Aligned_cols=362 Identities=14% Similarity=0.101 Sum_probs=286.8
Q ss_pred HHHHHhhcccccCCCCCCCCcchHHHHHHHHccc-ccCCchhHHHHHHhh--cCCCHhhHHHHHHHH--HhhCHHHHHHH
Q 007695 169 AEKIHERGEMILPEEPKPITGKCKLITDKILSLE-KEEDPSPLLAEWKEL--LQPSRIDWINLLDRL--REQNTQLYFKV 243 (592)
Q Consensus 169 ~~~~~ea~~~f~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~A~~~~~~~--~~p~~~t~~~lL~~~--~~~~~~~~~~~ 243 (592)
.|++++|.... .......|+.-..+.-+...+ ..|+.+.|...|.+. ..|+.+...+-+.-+ +.|..+++...
T Consensus 129 rg~~~~al~~y--~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 129 RGQLQDALALY--RAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred hchHHHHHHHH--HHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHH
Confidence 46677777665 212233333333344455555 899999999999887 567767766666655 44556666555
Q ss_pred HHHHhhhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 007695 244 AELVLSEESFQTN-VRDYSKLIDAHAKENCLEDAERILKKMNENGIVPD-IVTSTVLVHMYSKAGNLDRAKEAFESLRSH 321 (592)
Q Consensus 244 ~~~~~~~~~~~p~-~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~ 321 (592)
..+.+. ..|. ...|+.|...+-..|++..|++.|++..+. +|+ ...|-.|.+.|...+.++.|...|.+....
T Consensus 207 YlkAi~---~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l 281 (966)
T KOG4626|consen 207 YLKAIE---TQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL 281 (966)
T ss_pred HHHHHh---hCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc
Confidence 544432 2343 345889999999999999999999999885 554 567889999999999999999999988865
Q ss_pred CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Q 007695 322 GFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERS-EEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESC 400 (592)
Q Consensus 322 g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 400 (592)
. +.....|..|...|-..|..+.|+..|++.++.. |+ ...|+.|..++-..|++.+|...|+...... +....+.
T Consensus 282 r-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~--P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam 357 (966)
T KOG4626|consen 282 R-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ--PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAM 357 (966)
T ss_pred C-CcchhhccceEEEEeccccHHHHHHHHHHHHhcC--CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHH
Confidence 3 4457788899999999999999999999999853 44 7899999999999999999999999998764 4457889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 007695 401 TLLVEAYGQAGDPDQARSNFDYMIRLGHKPD-DRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPG-PATYTVLVDWLG 478 (592)
Q Consensus 401 ~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd-~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~ 478 (592)
+.|...|...|.++.|..+|....+- .|. ...++.+...|-+.|++++|+..|++..+ +.|+ ...|+.+-..|-
T Consensus 358 ~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~k 433 (966)
T KOG4626|consen 358 NNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYK 433 (966)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHH
Confidence 99999999999999999999998874 343 45788899999999999999999999877 6787 478999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007695 479 RLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547 (592)
Q Consensus 479 ~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~ 547 (592)
..|+.+.|.+.+.+.+..+.. -...++.|...|...|++.+|+.-+++...... -.++.|-.++.++
T Consensus 434 e~g~v~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP-DfpdA~cNllh~l 500 (966)
T KOG4626|consen 434 EMGDVSAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP-DFPDAYCNLLHCL 500 (966)
T ss_pred HhhhHHHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC-CCchhhhHHHHHH
Confidence 999999999999999875433 357889999999999999999999999887532 2355665565554
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.70 E-value=1.2e-12 Score=148.93 Aligned_cols=394 Identities=11% Similarity=0.014 Sum_probs=285.4
Q ss_pred HHHH---HHHHHhhcccccCCCCCCCCcchHHHHHHHHccc-ccCCchhHHHHHHhh--cCCCH-hhHHHHHHHH-HhhC
Q 007695 165 WTEV---AEKIHERGEMILPEEPKPITGKCKLITDKILSLE-KEEDPSPLLAEWKEL--LQPSR-IDWINLLDRL-REQN 236 (592)
Q Consensus 165 ~~~~---~~~~~ea~~~f~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~A~~~~~~~--~~p~~-~t~~~lL~~~-~~~~ 236 (592)
|..+ .|+..+|+.++. ......+........+..++ +.|++++|+..|++. ..|+. ..+..+...+ ..++
T Consensus 21 ~~~ia~~~g~~~~A~~~~~--~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~ 98 (765)
T PRK10049 21 WLQIALWAGQDAEVITVYN--RYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQ 98 (765)
T ss_pred HHHHHHHcCCHHHHHHHHH--HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 7666 467788887772 22223344444455566666 899999999999986 44553 3344444444 6678
Q ss_pred HHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007695 237 TQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFE 316 (592)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~ 316 (592)
...+...++..+... +.+.. +..+..++...|+.++|+..++++.+.... +...+..+...+...+..+.|+..++
T Consensus 99 ~~eA~~~l~~~l~~~--P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~ 174 (765)
T PRK10049 99 YDEALVKAKQLVSGA--PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAID 174 (765)
T ss_pred HHHHHHHHHHHHHhC--CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 888999888887653 44555 888888999999999999999999987433 56666778888888999999999998
Q ss_pred HHHhCCCCCCH------HHHHHHHHHHH-----HcCCc---hHHHHHHHHHHHC-CCCCCHH-HH----HHHHHHHHhCC
Q 007695 317 SLRSHGFQPDK------KVYNSMIMAYV-----NAGQP---KLGMSLVDMMITS-GIERSEE-IY----LALLRSFAQCG 376 (592)
Q Consensus 317 ~m~~~g~~pd~------~t~~~li~a~~-----~~g~~---~~A~~l~~~m~~~-g~~p~~~-t~----~~Ll~~~~~~g 376 (592)
.... .|+. .....++..+. ..+++ ++|++.++.+.+. ...|+.. .+ ...+.++...|
T Consensus 175 ~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g 251 (765)
T PRK10049 175 DANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARD 251 (765)
T ss_pred hCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhh
Confidence 7664 2331 12222333222 12233 6788888888864 2223221 11 11134556779
Q ss_pred CHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHH
Q 007695 377 DVRGAGQITNIMRIEEFQ-PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP---DDRCTASMIAAYGKKNLLDKAL 452 (592)
Q Consensus 377 ~~~~A~~~~~~m~~~g~~-~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~p---d~~t~~~li~a~~~~g~~~~A~ 452 (592)
++++|...|+.+...+-+ |+ ..-..+...|...|++++|...|+++....... ....+..+..++...|++++|.
T Consensus 252 ~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~ 330 (765)
T PRK10049 252 RYKDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGAL 330 (765)
T ss_pred hHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHH
Confidence 999999999999987622 32 222335778999999999999999988753221 1345666777889999999999
Q ss_pred HHHHHHHHCC-----------CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCH
Q 007695 453 NLLLELEKDG-----------FEPG---PATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIE 518 (592)
Q Consensus 453 ~l~~~m~~~g-----------~~p~---~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~ 518 (592)
.+++.+.... -.|+ ...+..+...+...|++++|...++++...... +...+..+...+...|++
T Consensus 331 ~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~-n~~l~~~lA~l~~~~g~~ 409 (765)
T PRK10049 331 TVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG-NQGLRIDYASVLQARGWP 409 (765)
T ss_pred HHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCH
Confidence 9999987642 1233 234566778889999999999999999887555 788999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH
Q 007695 519 KKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASE 572 (592)
Q Consensus 519 ~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~g~~pd~ 572 (592)
++|.+.+++..... +-++..+..+...+...|++++|..+++++++. .|+.
T Consensus 410 ~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~ 460 (765)
T PRK10049 410 RAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQD 460 (765)
T ss_pred HHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCC
Confidence 99999999998863 345677777888999999999999999999975 6776
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.69 E-value=1.5e-12 Score=145.28 Aligned_cols=330 Identities=9% Similarity=-0.080 Sum_probs=252.3
Q ss_pred HhhCHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007695 233 REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312 (592)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~ 312 (592)
..++.+.+...+...+. ..|+...|..+..+|.+.|++++|+..++...+... .+...|..+..+|...|++++|.
T Consensus 139 ~~~~~~~Ai~~y~~al~---~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~a~a~~~lg~~~eA~ 214 (615)
T TIGR00990 139 RNKDFNKAIKLYSKAIE---CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDP-DYSKALNRRANAYDGLGKYADAL 214 (615)
T ss_pred HcCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHH
Confidence 56778888888887764 467888899999999999999999999999998642 26778899999999999999998
Q ss_pred HHHHHHHhCCC----------------------------C-C---CHHHHHHH---------------------------
Q 007695 313 EAFESLRSHGF----------------------------Q-P---DKKVYNSM--------------------------- 333 (592)
Q Consensus 313 ~~~~~m~~~g~----------------------------~-p---d~~t~~~l--------------------------- 333 (592)
..|......+- . + ........
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (615)
T TIGR00990 215 LDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQ 294 (615)
T ss_pred HHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccch
Confidence 76654432110 0 0 00000000
Q ss_pred HHHH------HHcCCchHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 007695 334 IMAY------VNAGQPKLGMSLVDMMITSG-IER-SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVE 405 (592)
Q Consensus 334 i~a~------~~~g~~~~A~~l~~~m~~~g-~~p-~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~ 405 (592)
+..+ ...+++++|.+.|+...+.+ ..| +...+..+...+...|++++|...++...... +.+...|..+..
T Consensus 295 ~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~ 373 (615)
T TIGR00990 295 LQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRAS 373 (615)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHH
Confidence 0000 11256888999999998764 233 45678888888999999999999999998764 445778999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 007695 406 AYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINE 485 (592)
Q Consensus 406 ~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~ 485 (592)
.+...|++++|...|++.....+ .+...|..+...|...|++++|...|++..+.. +.+...+..+..++.+.|++++
T Consensus 374 ~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~e 451 (615)
T TIGR00990 374 MNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIAS 451 (615)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHH
Confidence 99999999999999999988643 257788889999999999999999999988753 3356777788889999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHhCCCHHHHHHH
Q 007695 486 AEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD------DFERIINGLLAGGFLQDAQRV 559 (592)
Q Consensus 486 A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~------~~~~li~a~~~~g~~~~A~~l 559 (592)
|...+++..+.... +...++.+...+...|++++|...|++........+.. .++..+..+...|++++|.++
T Consensus 452 A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~ 530 (615)
T TIGR00990 452 SMATFRRCKKNFPE-APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENL 530 (615)
T ss_pred HHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 99999999876433 67889999999999999999999999987753321111 122222334457999999999
Q ss_pred HHHHHHCCCCCCH
Q 007695 560 HGLMEAQGFAASE 572 (592)
Q Consensus 560 ~~~m~~~g~~pd~ 572 (592)
+++.... .|+.
T Consensus 531 ~~kAl~l--~p~~ 541 (615)
T TIGR00990 531 CEKALII--DPEC 541 (615)
T ss_pred HHHHHhc--CCCc
Confidence 9998775 4555
No 20
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.65 E-value=3.3e-12 Score=126.24 Aligned_cols=347 Identities=13% Similarity=0.153 Sum_probs=245.5
Q ss_pred hcCCCHhhHHHHHHHHHh-hCHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 007695 217 LLQPSRIDWINLLDRLRE-QNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTS 295 (592)
Q Consensus 217 ~~~p~~~t~~~lL~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~ 295 (592)
....+..|+.++|.+++. ...+.+..++++.-.. ..+.+..+||.+|.+-.- ....++..+|....+.||..|+
T Consensus 202 ~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~-k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl~Tf 276 (625)
T KOG4422|consen 202 TLPKTDETVSIMIAGLCKFSSLERARELYKEHRAA-KGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNLFTF 276 (625)
T ss_pred hcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHh-hheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCchHhH
Confidence 344466788999998854 3455555555554333 347788899999876543 2337888999999999999999
Q ss_pred HHHHHHHHHcCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchH-HHHHHHHHHH----CCCCC----CH
Q 007695 296 TVLVHMYSKAGNLDR----AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKL-GMSLVDMMIT----SGIER----SE 362 (592)
Q Consensus 296 ~~Li~~~~~~g~~~~----A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~-A~~l~~~m~~----~g~~p----~~ 362 (592)
|+++.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.+++.+ +..++.+... ..++| |.
T Consensus 277 NalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~ 356 (625)
T KOG4422|consen 277 NALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDN 356 (625)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchh
Confidence 999999999998875 45677888999999999999999999999888855 3344444332 22222 45
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcC----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 007695 363 EIYLALLRSFAQCGDVRGAGQITNIMRIEE----FQPT---LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435 (592)
Q Consensus 363 ~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g----~~~~---~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~ 435 (592)
..|...+..|.+..+.+.|.++..-+.... +.|+ ..-|..+....|+....+.....|+.|.-+-+-|+..+.
T Consensus 357 ~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m 436 (625)
T KOG4422|consen 357 KFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTM 436 (625)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhH
Confidence 567788899999999999998887765431 2333 234566777888888999999999999887777888899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CH--------H-----HHHHHHH-------HHH
Q 007695 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQ-LI--------N-----EAEQLLG-------KIS 494 (592)
Q Consensus 436 ~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g-~~--------~-----~A~~l~~-------~m~ 494 (592)
..++.+..-.|.++-.-+++..++..|..-+.....-++..+++.+ +. . -|..+++ ++.
T Consensus 437 ~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r 516 (625)
T KOG4422|consen 437 IHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQR 516 (625)
T ss_pred HHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 9999999999999988899988888775555544444444555443 11 0 0111111 122
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHHHHH---HHHHHHHhCCCHHHHHHHHHHHHHCCCCC
Q 007695 495 ELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKE-QMGPDDFE---RIINGLLAGGFLQDAQRVHGLMEAQGFAA 570 (592)
Q Consensus 495 ~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~---~li~a~~~~g~~~~A~~l~~~m~~~g~~p 570 (592)
...-+....+...-.+.+.|..++|.++|..+..++. .|.....| -++..-.+......|+.+++-|...++..
T Consensus 517 --~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~ 594 (625)
T KOG4422|consen 517 --AQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPI 594 (625)
T ss_pred --hccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchh
Confidence 2334566778888888999999999999998865433 23222344 45556667788889999998887655443
No 21
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.65 E-value=3.3e-12 Score=143.39 Aligned_cols=391 Identities=13% Similarity=0.081 Sum_probs=255.9
Q ss_pred HHHHhhcccccCCCCCCCCcchH-HHHHHHHccc-ccCCchhHHHHHHhhcCCCHhhHHHHHHH--H--HhhCHHHHHHH
Q 007695 170 EKIHERGEMILPEEPKPITGKCK-LITDKILSLE-KEEDPSPLLAEWKELLQPSRIDWINLLDR--L--REQNTQLYFKV 243 (592)
Q Consensus 170 ~~~~ea~~~f~~~~~~~~~~~~~-~~~~~l~~~~-~~g~~~~A~~~~~~~~~p~~~t~~~lL~~--~--~~~~~~~~~~~ 243 (592)
|+..+|...| ......+|+.. .+. .++.++ ..|+.++|+..+++...|+...+..++.. + ..++...+..+
T Consensus 48 Gd~~~Al~~L--~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiel 124 (822)
T PRK14574 48 GDTAPVLDYL--QEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALAL 124 (822)
T ss_pred CCHHHHHHHH--HHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4555666666 22222333331 122 444444 67888888888888877766666666632 2 34677788888
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 007695 244 AELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGF 323 (592)
Q Consensus 244 ~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~ 323 (592)
++.++... +.++..+..++..+.+.++.++|++.++++... .|+...+..++..+...++..+|++.++++.+..
T Consensus 125 y~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~- 199 (822)
T PRK14574 125 WQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA- 199 (822)
T ss_pred HHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-
Confidence 88877654 334555667777888888888888888888775 4555555445445544566656888888887763
Q ss_pred CCCHHHHHHHHHHHHHcCCchHHHHHHH------------------------------------------------HHHH
Q 007695 324 QPDKKVYNSMIMAYVNAGQPKLGMSLVD------------------------------------------------MMIT 355 (592)
Q Consensus 324 ~pd~~t~~~li~a~~~~g~~~~A~~l~~------------------------------------------------~m~~ 355 (592)
+-+...+..+..++.+.|-...|.++.. .+..
T Consensus 200 P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~ 279 (822)
T PRK14574 200 PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLT 279 (822)
T ss_pred CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHh
Confidence 3355566666666665554444333332 2222
Q ss_pred C-CCCCCH-----HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--
Q 007695 356 S-GIERSE-----EIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG-- 427 (592)
Q Consensus 356 ~-g~~p~~-----~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g-- 427 (592)
. +-.|.. .+..-.+-++...+++.++.+.|+.+...+.+....+-.++..+|...+++++|..+|..+....
T Consensus 280 ~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~ 359 (822)
T PRK14574 280 RWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGK 359 (822)
T ss_pred hccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcccc
Confidence 0 111211 11223345567778888888888888877765555677788888888888888888888886642
Q ss_pred ---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------CCCH---HHHHHHHHHHHHcCCHHHHHHHH
Q 007695 428 ---HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGF-----------EPGP---ATYTVLVDWLGRLQLINEAEQLL 490 (592)
Q Consensus 428 ---~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~-----------~p~~---~ty~~li~~~~~~g~~~~A~~l~ 490 (592)
..++......|.-+|...+++++|..+++.+.+... .||. ..+..++..+...|++.+|++.+
T Consensus 360 ~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~l 439 (822)
T PRK14574 360 TFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKL 439 (822)
T ss_pred ccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 122333356778888888888888888888876311 1232 33445666778888888888888
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC
Q 007695 491 GKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAA 570 (592)
Q Consensus 491 ~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p 570 (592)
+.+....+. |..+...+.+.+...|.+..|...++..... .+-+..+....+.++...|++++|..+.+...+. .|
T Consensus 440 e~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l-~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~--~P 515 (822)
T PRK14574 440 EDLSSTAPA-NQNLRIALASIYLARDLPRKAEQELKAVESL-APRSLILERAQAETAMALQEWHQMELLTDDVISR--SP 515 (822)
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh-CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--CC
Confidence 888776555 7888888888888888888888888766655 3345566667777788888888888888777654 44
Q ss_pred CH
Q 007695 571 SE 572 (592)
Q Consensus 571 d~ 572 (592)
+.
T Consensus 516 e~ 517 (822)
T PRK14574 516 ED 517 (822)
T ss_pred Cc
Confidence 44
No 22
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.62 E-value=8.4e-12 Score=123.44 Aligned_cols=311 Identities=16% Similarity=0.116 Sum_probs=240.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 007695 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332 (592)
Q Consensus 253 ~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ 332 (592)
.+.+..+|.++|.+.|+-...+.|..+|++......+.+..+||.+|.+-+-..+ .++..+|....+.||..|||+
T Consensus 203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNa 278 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNA 278 (625)
T ss_pred cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHH
Confidence 3567789999999999999999999999999888888899999999976654433 789999999999999999999
Q ss_pred HHHHHHHcCCchH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHH-HHHHHHHHHH----cCC----CCCHHH
Q 007695 333 MIMAYVNAGQPKL----GMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRG-AGQITNIMRI----EEF----QPTLES 399 (592)
Q Consensus 333 li~a~~~~g~~~~----A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~-A~~~~~~m~~----~g~----~~~~~~ 399 (592)
++++..+.|+++. |.+++.+|.+.|+.|...+|..+|..+++-++..+ +..++.++.. +.+ +.|...
T Consensus 279 lL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~F 358 (625)
T KOG4422|consen 279 LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKF 358 (625)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHH
Confidence 9999999998875 56788999999999999999999999999888654 4444444443 222 224566
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 007695 400 CTLLVEAYGQAGDPDQARSNFDYMIRLG----HKPD---DRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTV 472 (592)
Q Consensus 400 ~~~Li~~~~~~g~~~~A~~lf~~m~~~g----~~pd---~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ 472 (592)
|..-+..|.+..+.+-|.++-.-+.... +.|+ ..-|..+....|+....+.-..+|+.|.-.-.-|+..+...
T Consensus 359 F~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~ 438 (625)
T KOG4422|consen 359 FQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIH 438 (625)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHH
Confidence 7778888889999999988877665421 2222 23456677888899999999999999998878899999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC-C--------HHH-----HHHHH-------HHHHHc
Q 007695 473 LVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG-I--------EKK-----ALQAL-------GFLEAK 531 (592)
Q Consensus 473 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g-~--------~~~-----A~~~~-------~~m~~~ 531 (592)
++++....+.++-..+++..+...|..-+.....-+...+++.. . +.. |..++ .+++.
T Consensus 439 ~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~- 517 (625)
T KOG4422|consen 439 LLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRA- 517 (625)
T ss_pred HHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHh-
Confidence 99999999999999999999988876555555554555554433 1 111 11122 12332
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC
Q 007695 532 KEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFA 569 (592)
Q Consensus 532 ~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~g~~ 569 (592)
...++...+.....+.+.|..++|.+++..+.+.|-+
T Consensus 518 -~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ 554 (625)
T KOG4422|consen 518 -QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNK 554 (625)
T ss_pred -ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCc
Confidence 3445667888888999999999999999999766544
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.62 E-value=3.2e-11 Score=135.59 Aligned_cols=367 Identities=15% Similarity=0.054 Sum_probs=267.3
Q ss_pred HHHHcccccCCchhHHHHHHhhc--CCCH--hhHHHHHHHH-HhhCHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHc
Q 007695 196 DKILSLEKEEDPSPLLAEWKELL--QPSR--IDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKE 270 (592)
Q Consensus 196 ~~l~~~~~~g~~~~A~~~~~~~~--~p~~--~t~~~lL~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~ 270 (592)
...+..++.|+++.|+..|++.. .|+. ..+ .++..+ ..++.+.+...++.... ....+......+...+...
T Consensus 39 ~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~--p~n~~~~~llalA~ly~~~ 115 (822)
T PRK14574 39 DSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQS--SMNISSRGLASAARAYRNE 115 (822)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhcc--CCCCCHHHHHHHHHHHHHc
Confidence 33444559999999999999984 4553 123 444443 56778888888887762 1223333444446688889
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHH
Q 007695 271 NCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLV 350 (592)
Q Consensus 271 g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~ 350 (592)
|++++|.++|+++.+.... |...+..++..|...++.++|++.++++... .|+...+..++..+...++..+|++.+
T Consensus 116 gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ 192 (822)
T PRK14574 116 KRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQAS 192 (822)
T ss_pred CCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHH
Confidence 9999999999999997544 5777778889999999999999999999876 567666644544444466666799999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH-------------------------------------------
Q 007695 351 DMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNI------------------------------------------- 387 (592)
Q Consensus 351 ~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~------------------------------------------- 387 (592)
+++.+.. +-+...+..+..++.+.|-...|.++..+
T Consensus 193 ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~al 271 (822)
T PRK14574 193 SEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKAL 271 (822)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHH
Confidence 9999874 33666667777666666655444444332
Q ss_pred -----HHHc--CCCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007695 388 -----MRIE--EFQPTLESC----TLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456 (592)
Q Consensus 388 -----m~~~--g~~~~~~~~----~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~ 456 (592)
+... ..++....| .=.+-++...|+..+++..|+.+...+......+-..+.++|...+++++|..+|+
T Consensus 272 a~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~ 351 (822)
T PRK14574 272 ADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILS 351 (822)
T ss_pred HHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 2210 112111111 22345677889999999999999988765455677889999999999999999999
Q ss_pred HHHHCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-------------CCCHH-HHHHHHHHHHHcCC
Q 007695 457 ELEKDG-----FEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE-------------APPFK-IQVSLCDMYARAGI 517 (592)
Q Consensus 457 ~m~~~g-----~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~-------------~p~~~-~~~~Li~~~~~~g~ 517 (592)
.+.... ..++......|.-++...+++++|..+++.+.+... .||.. .+..++..+...|+
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gd 431 (822)
T PRK14574 352 SLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALND 431 (822)
T ss_pred HHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCC
Confidence 987642 123444467888999999999999999999986311 22332 33456777889999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH
Q 007695 518 EKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASE 572 (592)
Q Consensus 518 ~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~g~~pd~ 572 (592)
..+|.+.++.+... -+-|+.....+...+...|...+|.+.++..... .|+.
T Consensus 432 l~~Ae~~le~l~~~-aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~ 483 (822)
T PRK14574 432 LPTAQKKLEDLSST-APANQNLRIALASIYLARDLPRKAEQELKAVESL--APRS 483 (822)
T ss_pred HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCcc
Confidence 99999999999776 4558888899999999999999999999777654 7776
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.60 E-value=7.9e-12 Score=142.36 Aligned_cols=353 Identities=12% Similarity=0.008 Sum_probs=252.0
Q ss_pred HHHHHhhcccccCCCCCCCCcchHHHHHHHHccc-ccCCchhHHHHHHhh--cCCCHhhHHHHHHHH-HhhCHHHHHHHH
Q 007695 169 AEKIHERGEMILPEEPKPITGKCKLITDKILSLE-KEEDPSPLLAEWKEL--LQPSRIDWINLLDRL-REQNTQLYFKVA 244 (592)
Q Consensus 169 ~~~~~ea~~~f~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~A~~~~~~~--~~p~~~t~~~lL~~~-~~~~~~~~~~~~ 244 (592)
.++..+|...+ .......|....+...+..++ +.|++++|+..+++. ..|+...|..+-..+ ..+....+...+
T Consensus 62 ~g~~~~A~~~~--~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~~~~la~~l~~~g~~~~Al~~l 139 (765)
T PRK10049 62 LKQWQNSLTLW--QKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKANLLALAYVYKRAGRHWDELRAM 139 (765)
T ss_pred cCCHHHHHHHH--HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHCCCHHHHHHHH
Confidence 35677787777 322233444333444555555 899999999999987 345544455554444 567788899999
Q ss_pred HHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHH-----HcCCH---HH
Q 007695 245 ELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDI------VTSTVLVHMYS-----KAGNL---DR 310 (592)
Q Consensus 245 ~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~------~~~~~Li~~~~-----~~g~~---~~ 310 (592)
+..+... +.+...+..+..++...+..+.|++.++.... .|+. .....++..+. ..+++ ++
T Consensus 140 ~~al~~~--P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~ 214 (765)
T PRK10049 140 TQALPRA--PQTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADR 214 (765)
T ss_pred HHHHHhC--CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHH
Confidence 8887653 44566667788888889999999999987664 2331 11222333332 22334 77
Q ss_pred HHHHHHHHHhC-CCCCCHH-HH----HHHHHHHHHcCCchHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhCCCHHHHHH
Q 007695 311 AKEAFESLRSH-GFQPDKK-VY----NSMIMAYVNAGQPKLGMSLVDMMITSGIE-RSEEIYLALLRSFAQCGDVRGAGQ 383 (592)
Q Consensus 311 A~~~~~~m~~~-g~~pd~~-t~----~~li~a~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~Ll~~~~~~g~~~~A~~ 383 (592)
|+..++.+.+. ...|+.. .+ ...+.++...|++++|+..|+.+...+.+ |+. ....+..+|...|++++|..
T Consensus 215 Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~ 293 (765)
T PRK10049 215 ALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQS 293 (765)
T ss_pred HHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHH
Confidence 88889888854 1233321 11 12244556779999999999999987632 332 22335778999999999999
Q ss_pred HHHHHHHcCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----------CCC---HHHHHHHHHHHHhcC
Q 007695 384 ITNIMRIEEFQP---TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGH-----------KPD---DRCTASMIAAYGKKN 446 (592)
Q Consensus 384 ~~~~m~~~g~~~---~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~-----------~pd---~~t~~~li~a~~~~g 446 (592)
.|+.+....-.. .......+..++...|++++|..+++.+....+ .|+ ...+......+...|
T Consensus 294 ~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g 373 (765)
T PRK10049 294 ILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSN 373 (765)
T ss_pred HHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcC
Confidence 999987653111 135566777788999999999999999987532 123 234556777889999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007695 447 LLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALG 526 (592)
Q Consensus 447 ~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~ 526 (592)
+.++|+.+++++.... +.+...+..+...+...|++++|++.+++....... +...+..++..+...|++++|..+++
T Consensus 374 ~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd-~~~l~~~~a~~al~~~~~~~A~~~~~ 451 (765)
T PRK10049 374 DLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPR-NINLEVEQAWTALDLQEWRQMDVLTD 451 (765)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999999999997753 445778889999999999999999999999986544 57788888889999999999999999
Q ss_pred HHHHc
Q 007695 527 FLEAK 531 (592)
Q Consensus 527 ~m~~~ 531 (592)
.+.+.
T Consensus 452 ~ll~~ 456 (765)
T PRK10049 452 DVVAR 456 (765)
T ss_pred HHHHh
Confidence 99885
No 25
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.52 E-value=3e-10 Score=130.29 Aligned_cols=356 Identities=13% Similarity=0.011 Sum_probs=234.8
Q ss_pred Hccc-ccCCchhHHHHHHhhcCCCHhhHHHHHHHH---HhhCHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHH
Q 007695 199 LSLE-KEEDPSPLLAEWKELLQPSRIDWINLLDRL---REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLE 274 (592)
Q Consensus 199 ~~~~-~~g~~~~A~~~~~~~~~p~~~t~~~lL~~~---~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~ 274 (592)
+..+ +++.++-|.++ .. ..|.... ..+... ...+..++....+.+.+.. +-+....-.+--...+.|+.+
T Consensus 320 ~~~~~~~~~~~~~~~~-~~-~~~~~~~--~~~r~~~~~~~~~~~~~~~~~~~~y~~~--~~~~~~l~q~~~~~~~~~~~~ 393 (987)
T PRK09782 320 LPVLLKEGQYDAAQKL-LA-TLPANEM--LEERYAVSVATRNKAEALRLARLLYQQE--PANLTRLDQLTWQLMQNGQSR 393 (987)
T ss_pred HHHHHhccHHHHHHHH-hc-CCCcchH--HHHHHhhccccCchhHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcccHH
Confidence 4455 67777755544 33 4444332 222222 2244555555555555442 224444445555567788888
Q ss_pred HHHHHHHHHHHC-C-CCCCHHHHHHHHHHHHHcCC---HHHHHHH----------------------HHHHHh-CCC-CC
Q 007695 275 DAERILKKMNEN-G-IVPDIVTSTVLVHMYSKAGN---LDRAKEA----------------------FESLRS-HGF-QP 325 (592)
Q Consensus 275 ~A~~l~~~m~~~-g-~~pd~~~~~~Li~~~~~~g~---~~~A~~~----------------------~~~m~~-~g~-~p 325 (592)
+|.++|+..... + -.++...-+-|+..|.+.+. ..++..+ ++.... .+. ++
T Consensus 394 ~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~ 473 (987)
T PRK09782 394 EAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSP 473 (987)
T ss_pred HHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCC
Confidence 888888887662 1 22344445567777777655 2222222 111111 011 33
Q ss_pred --CHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 007695 326 --DKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLL 403 (592)
Q Consensus 326 --d~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L 403 (592)
+...|..+..++.. +++.+|...+.+..... |+......+...+...|++++|...|+.+... +|+...+..+
T Consensus 474 ~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~l 548 (987)
T PRK09782 474 SYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAA 548 (987)
T ss_pred CCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHH
Confidence 56777777777766 78888888777776643 55544444555566888888888888887554 4455556677
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 007695 404 VEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLI 483 (592)
Q Consensus 404 i~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~ 483 (592)
...+.+.|+.++|...|++.....+. +...+..+...+...|++++|...|++..+. .|+...+..+..++.+.|++
T Consensus 549 a~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~ 625 (987)
T PRK09782 549 ANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNV 625 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCH
Confidence 77888888888888888888775422 2233333334445568889998888888763 46777888888888888999
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 007695 484 NEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLM 563 (592)
Q Consensus 484 ~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m 563 (592)
++|...+++....... +...++.+...+...|+.++|...+++..+.. +-++..+..+..++...|++++|...|++.
T Consensus 626 deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~A 703 (987)
T PRK09782 626 PAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLV 703 (987)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999888888887655 67788888888888888888888888887763 346777888888888889998888888888
Q ss_pred HHCCCCCCH
Q 007695 564 EAQGFAASE 572 (592)
Q Consensus 564 ~~~g~~pd~ 572 (592)
.+. .|+.
T Consensus 704 l~l--~P~~ 710 (987)
T PRK09782 704 IDD--IDNQ 710 (987)
T ss_pred Hhc--CCCC
Confidence 765 4544
No 26
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.51 E-value=1.1e-10 Score=133.97 Aligned_cols=264 Identities=12% Similarity=0.014 Sum_probs=183.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007695 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335 (592)
Q Consensus 256 ~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~ 335 (592)
+...|..+..++.. ++.++|...|.+.... .|+......+...+...|++++|...|+++... +|+...+..+..
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~ 550 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAAN 550 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHH
Confidence 56667777766665 7777788877776664 355544444455556788888888888887654 455556667777
Q ss_pred HHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 007695 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQ 415 (592)
Q Consensus 336 a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~ 415 (592)
++.+.|++++|..++++.+... +.+...+..+...+.+.|++++|...+++..+. .|+...|..+..++.+.|++++
T Consensus 551 all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~de 627 (987)
T PRK09782 551 TAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPA 627 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHH
Confidence 7788888888888888887754 223333444444455668888888888888766 3567788888888888888888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007695 416 ARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495 (592)
Q Consensus 416 A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 495 (592)
|...|++.....+. +...++.+..++...|+.++|+..|....+.. +-+...+..+..++...|++++|...+++..+
T Consensus 628 A~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 628 AVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 88888888775432 45566667777888888888888888877642 23456777788888888888888888888877
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007695 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEA 530 (592)
Q Consensus 496 ~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~ 530 (592)
.... +..+.-.......+..+++.|.+-+.+...
T Consensus 706 l~P~-~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~ 739 (987)
T PRK09782 706 DIDN-QALITPLTPEQNQQRFNFRRLHEEVGRRWT 739 (987)
T ss_pred cCCC-CchhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 5433 334555555556666666777666665543
No 27
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.49 E-value=1.5e-10 Score=121.99 Aligned_cols=283 Identities=11% Similarity=0.053 Sum_probs=203.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHHcCCchHH
Q 007695 270 ENCLEDAERILKKMNENGIVPDIVTSTVL-VHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYN--SMIMAYVNAGQPKLG 346 (592)
Q Consensus 270 ~g~~~~A~~l~~~m~~~g~~pd~~~~~~L-i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~--~li~a~~~~g~~~~A 346 (592)
.|+++.|.+.+....+.. ++...+..+ .....+.|+++.|.+.|.++.+. .|+...+. .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 688888888887765542 223333333 44447888889999998888765 55554333 335677888899999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHHcCCHHHHHHH
Q 007695 347 MSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL-------ESCTLLVEAYGQAGDPDQARSN 419 (592)
Q Consensus 347 ~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~-------~~~~~Li~~~~~~g~~~~A~~l 419 (592)
...++++.+.. +-+...+..+...|.+.|++++|..++..+.+.+..++. .+|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99888888765 336778888888888889999999888888877643222 1333344444445556666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 007695 420 FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499 (592)
Q Consensus 420 f~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 499 (592)
++.+... .+.+......+..++...|+.++|..++.+..+. .|+.... ++.+....++.+++.+..+...+....
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~ 326 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGD 326 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCC
Confidence 6665442 2346667778888888999999999999888773 4454222 223334558888899998888877655
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 007695 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEA 565 (592)
Q Consensus 500 p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~ 565 (592)
|...+..+...|.+.+++++|...|+...+. .|+...|..+...+.+.|+.++|.++|++-..
T Consensus 327 -~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 327 -TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred -CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7778888999999999999999999988874 57777788888999999999999998887654
No 28
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.49 E-value=1.6e-10 Score=122.23 Aligned_cols=288 Identities=14% Similarity=0.060 Sum_probs=204.8
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCCch
Q 007695 268 AKENCLEDAERILKKMNENGIVPDI-VTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDK--KVYNSMIMAYVNAGQPK 344 (592)
Q Consensus 268 ~~~g~~~~A~~l~~~m~~~g~~pd~-~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~--~t~~~li~a~~~~g~~~ 344 (592)
...|+++.|.+.+.+..+. .|+. ..+-.....+...|+++.|.+.|.+..+. .|+. ...-.....+...|+++
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHH
Confidence 4578999999999887775 3443 33444567777889999999999888765 3443 23444577788899999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHH---HHHcCCHHHHHHHH
Q 007695 345 LGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCT-LLVEA---YGQAGDPDQARSNF 420 (592)
Q Consensus 345 ~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~-~Li~~---~~~~g~~~~A~~lf 420 (592)
.|...++.+.+... -+..++..+...+...|+++.|.+.+..+.+.+.. +...+. .-..+ +...+..+.+...+
T Consensus 171 ~Al~~l~~l~~~~P-~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L 248 (409)
T TIGR00540 171 AARHGVDKLLEMAP-RHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGL 248 (409)
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 99999999988753 36778888999999999999999999999888643 333331 11111 12333333334455
Q ss_pred HHHHHcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHH
Q 007695 421 DYMIRLGH---KPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPAT---YTVLVDWLGRLQLINEAEQLLGKIS 494 (592)
Q Consensus 421 ~~m~~~g~---~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t---y~~li~~~~~~g~~~~A~~l~~~m~ 494 (592)
..+....+ +.+...+..+...+...|+.++|..++.+..+.. |+... ...........++.+.+.+.++...
T Consensus 249 ~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~l 326 (409)
T TIGR00540 249 LNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQA 326 (409)
T ss_pred HHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHH
Confidence 55554322 1267788888889999999999999999988753 33331 1111122233577888888888877
Q ss_pred hcCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 007695 495 ELGEAPPF--KIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLME 564 (592)
Q Consensus 495 ~~g~~p~~--~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~ 564 (592)
+.... |+ ....++...|.+.|++++|.+.|+........|++..+..+...+.+.|+.++|.+++++-.
T Consensus 327 k~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 327 KNVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HhCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 76444 45 67778899999999999999999964444456788888899999999999999999998754
No 29
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.48 E-value=3.2e-13 Score=135.53 Aligned_cols=259 Identities=21% Similarity=0.224 Sum_probs=68.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 007695 262 KLIDAHAKENCLEDAERILKKMNENG-IVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNA 340 (592)
Q Consensus 262 ~Li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~ 340 (592)
.+...+.+.|++++|+++++...... .+-|...|..+...+...++++.|.+.|+++...+ +-+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 33555556666666666664433332 12233334444445555666666666666665543 2234445555555 455
Q ss_pred CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007695 341 GQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE-FQPTLESCTLLVEAYGQAGDPDQARSN 419 (592)
Q Consensus 341 g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~Li~~~~~~g~~~~A~~l 419 (592)
+++++|.+++....+.. ++...+..++..+.+.++++++..+++.+.... .+.+...|..+...+.+.|+.++|...
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 66666666655544332 344445555555666666666666666554321 233455555555556666666666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 007695 420 FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499 (592)
Q Consensus 420 f~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 499 (592)
|++.....+. |....+.++..+...|+.+++..++....+.. +.|+..+..+..++...|+.++|...+++..+....
T Consensus 169 ~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 169 YRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp HHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccccc
Confidence 6655553221 34445555555555565555555555544432 223334444555555555555555555555443322
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007695 500 PPFKIQVSLCDMYARAGIEKKALQALGF 527 (592)
Q Consensus 500 p~~~~~~~Li~~~~~~g~~~~A~~~~~~ 527 (592)
|+.+...+.+++...|+.++|..+.++
T Consensus 247 -d~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 247 -DPLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp --HHHHHHHHHHHT--------------
T ss_pred -ccccccccccccccccccccccccccc
Confidence 455555555555555555555555443
No 30
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.46 E-value=4.5e-13 Score=134.50 Aligned_cols=261 Identities=16% Similarity=0.127 Sum_probs=113.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC
Q 007695 297 VLVHMYSKAGNLDRAKEAFESLRSHGF-QPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375 (592)
Q Consensus 297 ~Li~~~~~~g~~~~A~~~~~~m~~~g~-~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~ 375 (592)
.+...+.+.|++++|+++++....... +.|...|..+...+...++++.|...++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 568888999999999999966544321 334555556666777889999999999999987644 66777788877 789
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007695 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG-HKPDDRCTASMIAAYGKKNLLDKALNL 454 (592)
Q Consensus 376 g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g-~~pd~~t~~~li~a~~~~g~~~~A~~l 454 (592)
+++++|.+++....+. .++...+..++..+.+.++++++..+++.+.... ...+...|..+...+.+.|+.++|+..
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999877655 3566778889999999999999999999987642 345777888888999999999999999
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 007695 455 LLELEKDGFEPG-PATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKE 533 (592)
Q Consensus 455 ~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~ 533 (592)
+++..+. .|+ ......++..+...|+.+++..++....+.. ..|...+..+..+|...|+.++|+.+|++.... .
T Consensus 169 ~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~-~ 244 (280)
T PF13429_consen 169 YRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL-N 244 (280)
T ss_dssp HHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH-S
T ss_pred HHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc-c
Confidence 9999884 454 6778889999999999999999998887764 335667889999999999999999999998876 3
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 007695 534 QMGPDDFERIINGLLAGGFLQDAQRVHGLMEA 565 (592)
Q Consensus 534 ~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~ 565 (592)
+.|+.....+..++.+.|+.++|.+++++...
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp TT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 45788888999999999999999999887643
No 31
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.45 E-value=9.5e-10 Score=115.83 Aligned_cols=285 Identities=14% Similarity=0.055 Sum_probs=215.9
Q ss_pred HHhhCHHHHHHHHHHHhhhCCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHHcCCH
Q 007695 232 LREQNTQLYFKVAELVLSEESFQTNVRD-YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTST--VLVHMYSKAGNL 308 (592)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~-y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~--~Li~~~~~~g~~ 308 (592)
+..|++..+.+.....-.. .+++.. |.....+..+.|+++.|.+.|.++.+. .|+...+. .....+...|++
T Consensus 95 ~~eGd~~~A~k~l~~~~~~---~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~ 169 (398)
T PRK10747 95 LAEGDYQQVEKLMTRNADH---AEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNEN 169 (398)
T ss_pred HhCCCHHHHHHHHHHHHhc---ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCH
Confidence 3457777666555543221 222333 333345558899999999999999875 45554333 446788999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhCCCHHHH
Q 007695 309 DRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSE-------EIYLALLRSFAQCGDVRGA 381 (592)
Q Consensus 309 ~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~-------~t~~~Ll~~~~~~g~~~~A 381 (592)
+.|...++.+.+.. +-+...+..+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+..
T Consensus 170 ~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l 248 (398)
T PRK10747 170 HAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGL 248 (398)
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 99999999999875 557888999999999999999999999999987654322 1334444444455566677
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007695 382 GQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKD 461 (592)
Q Consensus 382 ~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~ 461 (592)
.++++.+...- +.+......+...+...|+.++|..++++..+. .||... .++.+....++.++++...+...+.
T Consensus 249 ~~~w~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~ 323 (398)
T PRK10747 249 KRWWKNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQ 323 (398)
T ss_pred HHHHHhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhh
Confidence 77777765442 567888999999999999999999999998874 344421 2344445669999999999998875
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007695 462 GFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEA 530 (592)
Q Consensus 462 g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~ 530 (592)
. +-|...+.++...|.+.+++++|...|+...+. .|+...+..+...+.+.|+.++|..++++...
T Consensus 324 ~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 324 H-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3 345667889999999999999999999999874 58888999999999999999999999987644
No 32
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.42 E-value=3.5e-09 Score=114.26 Aligned_cols=356 Identities=14% Similarity=0.092 Sum_probs=254.6
Q ss_pred CCchhHHHHHHhhcC---CCHhhHHHHHHHHH-hhCHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 007695 205 EDPSPLLAEWKELLQ---PSRIDWINLLDRLR-EQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERIL 280 (592)
Q Consensus 205 g~~~~A~~~~~~~~~---p~~~t~~~lL~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~ 280 (592)
|+.++|.+++.+.++ .+...|.+|-..+- +|+.+.+.... ++..+-.+.|...|..+-....+.|+++.|.-.|
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~--llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFW--LLAAHLNPKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHH--HHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 888999999888743 34666888888774 44555555432 2333444567778999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCCchHHHHHHHHHHHC
Q 007695 281 KKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDK----KVYNSMIMAYVNAGQPKLGMSLVDMMITS 356 (592)
Q Consensus 281 ~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~----~t~~~li~a~~~~g~~~~A~~l~~~m~~~ 356 (592)
.+..+.. +++...+-.=+..|-+.|+...|.+.|.++....-+.|. .+--.++..+...++.+.|.+.+......
T Consensus 231 ~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 231 SRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 9999874 335555556677889999999999999999876311121 23334556677777778888888877762
Q ss_pred C-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc---------------------------CCCCCHHHHHHHHHHHH
Q 007695 357 G-IERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE---------------------------EFQPTLESCTLLVEAYG 408 (592)
Q Consensus 357 g-~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~---------------------------g~~~~~~~~~~Li~~~~ 408 (592)
+ -..+...++.++..|.+...++.+......+... ++.++..++ -+.-++.
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~icL~ 388 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMICLV 388 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhhhhh
Confidence 2 3346677889999999999999988887777652 122333331 2222333
Q ss_pred HcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 007695 409 QAGDPDQARSNFDYMIRLG--HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486 (592)
Q Consensus 409 ~~g~~~~A~~lf~~m~~~g--~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A 486 (592)
.....+....+........ +.-+...|.-+..+|...|++.+|+.+|..+...-..-+...|-.+..+|-..|..++|
T Consensus 389 ~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A 468 (895)
T KOG2076|consen 389 HLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEA 468 (895)
T ss_pred cccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHH
Confidence 4444444444445455544 33456678889999999999999999999998875555678899999999999999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------cCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 007695 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEA--------KKEQMGPDDFERIINGLLAGGFLQDAQR 558 (592)
Q Consensus 487 ~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~--------~~~~~~~~~~~~li~a~~~~g~~~~A~~ 558 (592)
.+.|......... +...-..|...+...|+.++|.+++..+.. ....|....-......|.+.|+.++=+.
T Consensus 469 ~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~ 547 (895)
T KOG2076|consen 469 IEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFIN 547 (895)
T ss_pred HHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 9999999886544 667777888889999999999999988542 1223333334445677788899888777
Q ss_pred HHHHHHH
Q 007695 559 VHGLMEA 565 (592)
Q Consensus 559 l~~~m~~ 565 (592)
+...|+.
T Consensus 548 t~~~Lv~ 554 (895)
T KOG2076|consen 548 TASTLVD 554 (895)
T ss_pred HHHHHHH
Confidence 7666664
No 33
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.42 E-value=1.8e-09 Score=114.27 Aligned_cols=288 Identities=15% Similarity=0.045 Sum_probs=208.6
Q ss_pred HhhCHHHHHHHHHHHhhhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 007695 233 REQNTQLYFKVAELVLSEESFQTNV-RDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRA 311 (592)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~p~~-~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A 311 (592)
..++...+.+.+....+ ..|+. ..|-....++.+.|+++.|.+.|.+..+....++....-.....+...|+++.|
T Consensus 96 ~~g~~~~A~~~l~~~~~---~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNAD---HAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred hCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 56777777777766543 23443 334455677888999999999999987753232333444468888999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHH-HHHHHH---HhCCCHHHHHHHHHH
Q 007695 312 KEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL-ALLRSF---AQCGDVRGAGQITNI 387 (592)
Q Consensus 312 ~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~-~Ll~~~---~~~g~~~~A~~~~~~ 387 (592)
...++.+.+.. +-+..++..+...|.+.|+++.|.+++..+.+.++. +...+. .-..++ ...+..+.+...+..
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999999875 557788999999999999999999999999998754 333332 111222 222222333334444
Q ss_pred HHHcC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH--H-HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007695 388 MRIEE---FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC--T-ASMIAAYGKKNLLDKALNLLLELEKD 461 (592)
Q Consensus 388 m~~~g---~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t--~-~~li~a~~~~g~~~~A~~l~~~m~~~ 461 (592)
+.... .+.+...+..+...+...|+.++|..++++..+.. ||... + ..........++.+.+...++...+.
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 44332 12478899999999999999999999999998854 34332 1 22222334457888888888887664
Q ss_pred CCCCC-H--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007695 462 GFEPG-P--ATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLE 529 (592)
Q Consensus 462 g~~p~-~--~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~ 529 (592)
.|+ . ....++...|.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++..
T Consensus 329 --~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 329 --VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred --CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 333 3 56668899999999999999999965554557888889999999999999999999998754
No 34
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.41 E-value=2.6e-09 Score=115.18 Aligned_cols=328 Identities=14% Similarity=0.053 Sum_probs=259.3
Q ss_pred HHhhCHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 007695 232 LREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRA 311 (592)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A 311 (592)
++.|+.+++..++.+++.+. +.+...|.+|...|-..|+.+++...+-..-..+ +-|...|..+.....+.|+++.|
T Consensus 150 farg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHH
Confidence 46788999999999998764 5677789999999999999999998886666553 33778999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHhCCCHHHHHHHHHH
Q 007695 312 KEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL----ALLRSFAQCGDVRGAGQITNI 387 (592)
Q Consensus 312 ~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~----~Ll~~~~~~g~~~~A~~~~~~ 387 (592)
.-.|.+..+.. +++...+---...|-+.|+...|...|.++.....+.|..-+. ..++.+...++-+.|.+.+..
T Consensus 227 ~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~ 305 (895)
T KOG2076|consen 227 RYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEG 305 (895)
T ss_pred HHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999999875 6666677778889999999999999999999865433333333 345667777888899998888
Q ss_pred HHHcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH----------------------H----HHHH
Q 007695 388 MRIEE-FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT----------------------A----SMIA 440 (592)
Q Consensus 388 m~~~g-~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~----------------------~----~li~ 440 (592)
....+ -..+...++.++..|.+...++.|......+......+|..-| . .+.-
T Consensus 306 ~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~i 385 (895)
T KOG2076|consen 306 ALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMI 385 (895)
T ss_pred HHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhh
Confidence 77632 1445677889999999999999999988888773222222211 1 2333
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCH
Q 007695 441 AYGKKNLLDKALNLLLELEKDGFEP--GPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIE 518 (592)
Q Consensus 441 a~~~~g~~~~A~~l~~~m~~~g~~p--~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~ 518 (592)
++.+.+..+....+...+.+..+.| +...|.-+.++|...|++++|..++..+......-+..+|--+..+|...|.+
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~ 465 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY 465 (895)
T ss_pred hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH
Confidence 4555666666666666666666433 46789999999999999999999999999876666788999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 007695 519 KKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLME 564 (592)
Q Consensus 519 ~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~ 564 (592)
+.|.+.++.+... .+-+.+.--+|...+.+.|+.++|.+++..|.
T Consensus 466 e~A~e~y~kvl~~-~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 466 EEAIEFYEKVLIL-APDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHHHHHHhc-CCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 9999999999875 23355556677888999999999999999864
No 35
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.38 E-value=2.2e-08 Score=100.80 Aligned_cols=391 Identities=12% Similarity=0.098 Sum_probs=263.1
Q ss_pred HHHHHHHHHhhcccccCCCCCCCCcchHHHHHHHHccc-ccCCchhHHHHHHhh----cCCCHhhHHHHHHHHHhhCHHH
Q 007695 165 WTEVAEKIHERGEMILPEEPKPITGKCKLITDKILSLE-KEEDPSPLLAEWKEL----LQPSRIDWINLLDRLREQNTQL 239 (592)
Q Consensus 165 ~~~~~~~~~ea~~~f~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~A~~~~~~~----~~p~~~t~~~lL~~~~~~~~~~ 239 (592)
|......+..|+.+| +.+..++...-.+.-.-+.+- ++..++.|+.+|+++ ++.|..=|-.+..-=..+|...
T Consensus 82 wEesq~e~~RARSv~--ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~g 159 (677)
T KOG1915|consen 82 WEESQKEIQRARSVF--ERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAG 159 (677)
T ss_pred HHHhHHHHHHHHHHH--HHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHH
Confidence 555566777888888 444444433322333344455 899999999999986 4444444444444446688888
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007695 240 YFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319 (592)
Q Consensus 240 ~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~ 319 (592)
+.++++..+. ..|+...|++.|..=.+-+.++.|..+|++..-. .|++.+|--....=-++|++..|..+|....
T Consensus 160 aRqiferW~~---w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAi 234 (677)
T KOG1915|consen 160 ARQIFERWME---WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAI 234 (677)
T ss_pred HHHHHHHHHc---CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 8888888764 6899999999999999999999999999998764 5899999888888888999999988888776
Q ss_pred hC-CC-CCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCC----------------------------------------
Q 007695 320 SH-GF-QPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSG---------------------------------------- 357 (592)
Q Consensus 320 ~~-g~-~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g---------------------------------------- 357 (592)
+. |- .-+...|++....=.++..++.|.-+|+-.++.=
T Consensus 235 e~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~ 314 (677)
T KOG1915|consen 235 EFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKE 314 (677)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHH
Confidence 42 10 0112233333332233444444544444443321
Q ss_pred ---CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH--HHHHHHH--------HHHHHcCCHHHHHHHHHHHH
Q 007695 358 ---IERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL--ESCTLLV--------EAYGQAGDPDQARSNFDYMI 424 (592)
Q Consensus 358 ---~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~~~Li--------~~~~~~g~~~~A~~lf~~m~ 424 (592)
-+.|-.+|-..++.-...|+.+...++|+.....- +|-. ..|...| -.=....+++.+.++|+...
T Consensus 315 v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l 393 (677)
T KOG1915|consen 315 VSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACL 393 (677)
T ss_pred HHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 12244445555555556666677777776666442 3321 1111111 11123556667777776666
Q ss_pred HcCCCCCHHHHHHHHHHH----HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 007695 425 RLGHKPDDRCTASMIAAY----GKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500 (592)
Q Consensus 425 ~~g~~pd~~t~~~li~a~----~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 500 (592)
+. ++....||.-+--.| .++.++..|.+++...+ |.-|-..+|...|..-.+.+.+|.+..+|.+.++.++.
T Consensus 394 ~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe- 469 (677)
T KOG1915|consen 394 DL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE- 469 (677)
T ss_pred hh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-
Confidence 62 222344554433333 34566777777776543 67788899999999889999999999999999998766
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 007695 501 PFKIQVSLCDMYARAGIEKKALQALGFLEAKKE-QMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQG 567 (592)
Q Consensus 501 ~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~g 567 (592)
|..+|......=...|+.+.|..+|+...+... ....-.|.+.|.-=...|.++.|..+|+.+++..
T Consensus 470 ~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 470 NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 888999888888899999999999998876532 1223357778887789999999999999998763
No 36
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.38 E-value=2.8e-09 Score=102.61 Aligned_cols=289 Identities=16% Similarity=0.123 Sum_probs=204.6
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHHcCCc
Q 007695 270 ENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDK------KVYNSMIMAYVNAGQP 343 (592)
Q Consensus 270 ~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~------~t~~~li~a~~~~g~~ 343 (592)
.++.++|.++|-+|.+.... +..+.-+|.+.|-+.|..+.|+++.+.+.++ ||. .....|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 46688888888888875222 4445567888888888888888888888763 442 2344566778888888
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCCHHHHHHH
Q 007695 344 KLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT----LESCTLLVEAYGQAGDPDQARSN 419 (592)
Q Consensus 344 ~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~Li~~~~~~g~~~~A~~l 419 (592)
|.|+.+|..+.+.+. .-......|+..|....+|++|..+-.++.+.+-.+. ...|.-|...+....+.+.|..+
T Consensus 124 DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 124 DRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 889888888877542 2456777888888888889998888888877654443 23466667777777888888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 007695 420 FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499 (592)
Q Consensus 420 f~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 499 (592)
+.+..+.+.+ .+..--.+-..+...|++..|++.+....+.+..--..+...|..+|...|+.++...++..+.+....
T Consensus 203 l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 203 LKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG 281 (389)
T ss_pred HHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence 8888775432 333333455677888999999999988887765555677888888999999999999998888875433
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCC
Q 007695 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLL---AGGFLQDAQRVHGLMEAQGF 568 (592)
Q Consensus 500 p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~---~~g~~~~A~~l~~~m~~~g~ 568 (592)
+ ..-..+...-....-.+.|...+.+-.. ..|+...+..+|..-. ..|...+.+.+++.|....+
T Consensus 282 ~--~~~l~l~~lie~~~G~~~Aq~~l~~Ql~--r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l 349 (389)
T COG2956 282 A--DAELMLADLIELQEGIDAAQAYLTRQLR--RKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQL 349 (389)
T ss_pred c--cHHHHHHHHHHHhhChHHHHHHHHHHHh--hCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHH
Confidence 3 3344444444445556666666554443 3577778888887654 34667778888888875533
No 37
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.38 E-value=2e-08 Score=100.24 Aligned_cols=374 Identities=13% Similarity=0.046 Sum_probs=244.2
Q ss_pred cccccCCchhHHHHHHhh--cCCCHhh-HHHHHHHHHhhCHHHHHHHHHHHhhhCCC-----------CCCHHHHHHHHH
Q 007695 200 SLEKEEDPSPLLAEWKEL--LQPSRID-WINLLDRLREQNTQLYFKVAELVLSEESF-----------QTNVRDYSKLID 265 (592)
Q Consensus 200 ~~~~~g~~~~A~~~~~~~--~~p~~~t-~~~lL~~~~~~~~~~~~~~~~~~~~~~~~-----------~p~~~~y~~Li~ 265 (592)
.+.+.|+++.|+.-|+.. ..|+-.+ +|..|.+++.++.+...+.+..++.-.|. .|+....|--|.
T Consensus 285 tfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~ 364 (840)
T KOG2003|consen 285 TFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIK 364 (840)
T ss_pred eEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHh
Confidence 445999999999999986 4688665 67777777888888888888887765543 233333333222
Q ss_pred -----HHHHcC--CHHHHHHHHHHHHHCCCCCCHHH---H------------------HHHHHHHHHcCCHHHHHHHHHH
Q 007695 266 -----AHAKEN--CLEDAERILKKMNENGIVPDIVT---S------------------TVLVHMYSKAGNLDRAKEAFES 317 (592)
Q Consensus 266 -----~~~~~g--~~~~A~~l~~~m~~~g~~pd~~~---~------------------~~Li~~~~~~g~~~~A~~~~~~ 317 (592)
-.-+.+ +.+++.-.--++..--+.||... | -.-..-|.++|+++.|.+++.-
T Consensus 365 nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv 444 (840)
T KOG2003|consen 365 NDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKV 444 (840)
T ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHH
Confidence 111111 12222222222222223343211 1 0112346788999999999888
Q ss_pred HHhCCCCCCHHHHHHHHHHHHH--cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Q 007695 318 LRSHGFQPDKKVYNSMIMAYVN--AGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP 395 (592)
Q Consensus 318 m~~~g~~pd~~t~~~li~a~~~--~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~ 395 (592)
+.+..-+.-...-|.|-..+.- -.++..|.++-+..+..+ .-|....+.-.+.....|++++|.+.|++....+-.
T Consensus 445 ~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas- 522 (840)
T KOG2003|consen 445 FEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDAS- 522 (840)
T ss_pred HHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchH-
Confidence 7754322112222222222222 345666666666555432 123333333334445678999999999999866422
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007695 396 TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475 (592)
Q Consensus 396 ~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~ 475 (592)
-+.....+.-.+-..|++++|++.|-++..- +.-+......+.+.|-...+..+|++++.+... -++.|+..++-|.+
T Consensus 523 c~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s-lip~dp~ilskl~d 600 (840)
T KOG2003|consen 523 CTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS-LIPNDPAILSKLAD 600 (840)
T ss_pred HHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc-cCCCCHHHHHHHHH
Confidence 2233333445577889999999999887652 123566777788889999999999999877643 24556788899999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HhCCCHH
Q 007695 476 WLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL-LAGGFLQ 554 (592)
Q Consensus 476 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~-~~~g~~~ 554 (592)
.|-+.|+-.+|.+.+-.-.+. ++.+..+...|...|....-+++|...|++..- ++|+..-|..+|..| .+.|+++
T Consensus 601 lydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyq 677 (840)
T KOG2003|consen 601 LYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQ 677 (840)
T ss_pred Hhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHH
Confidence 999999999999887765543 455888999999999999999999999998754 678888899888665 5789999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHhh
Q 007695 555 DAQRVHGLMEAQGFAASERLKVALISS 581 (592)
Q Consensus 555 ~A~~l~~~m~~~g~~pd~~~~~~l~~~ 581 (592)
+|..+|+...+. ++-|......|...
T Consensus 678 ka~d~yk~~hrk-fpedldclkflvri 703 (840)
T KOG2003|consen 678 KAFDLYKDIHRK-FPEDLDCLKFLVRI 703 (840)
T ss_pred HHHHHHHHHHHh-CccchHHHHHHHHH
Confidence 999999998764 55555444444443
No 38
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.37 E-value=4.8e-09 Score=113.94 Aligned_cols=380 Identities=12% Similarity=0.021 Sum_probs=270.5
Q ss_pred ccCCchhHHHHHHhhcCCCHhhHHHHHHH--HHh-----hCHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 007695 203 KEEDPSPLLAEWKELLQPSRIDWINLLDR--LRE-----QNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLED 275 (592)
Q Consensus 203 ~~g~~~~A~~~~~~~~~p~~~t~~~lL~~--~~~-----~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~ 275 (592)
+.|+.+.|+..|.+..+.|+..-++++.- +.. .+...++..+....... ..|+...+.|...|.-.|++..
T Consensus 211 kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n--~~nP~~l~~LAn~fyfK~dy~~ 288 (1018)
T KOG2002|consen 211 KLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN--NENPVALNHLANHFYFKKDYER 288 (1018)
T ss_pred hccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc--CCCcHHHHHHHHHHhhcccHHH
Confidence 88999999999999865555444444331 211 22444555555555444 3455677899999999999999
Q ss_pred HHHHHHHHHHCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCCchHHHHHHH
Q 007695 276 AERILKKMNENGIV--PDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDK--KVYNSMIMAYVNAGQPKLGMSLVD 351 (592)
Q Consensus 276 A~~l~~~m~~~g~~--pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~--~t~~~li~a~~~~g~~~~A~~l~~ 351 (592)
+..+...+...-.. .-..+|-.+.++|...|++++|...|.+..+. .|+. ..+.-+...|.+.|+++.+...|+
T Consensus 289 v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fE 366 (1018)
T KOG2002|consen 289 VWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFE 366 (1018)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHH
Confidence 99999998875311 12345778999999999999999999888765 3443 445568889999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhCC----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----
Q 007695 352 MMITSGIERSEEIYLALLRSFAQCG----DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM---- 423 (592)
Q Consensus 352 ~m~~~g~~p~~~t~~~Ll~~~~~~g----~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m---- 423 (592)
...... +-+..|...|...|...+ ..+.|..++......- +.|...|-.+...|-+.. ...++.+|...
T Consensus 367 kv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d-~~~sL~~~~~A~d~L 443 (1018)
T KOG2002|consen 367 KVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTD-PWASLDAYGNALDIL 443 (1018)
T ss_pred HHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHH
Confidence 998863 446788888888888775 4677777777777654 667888888887776654 44447766544
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007695 424 IRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKD---GFE------PGPATYTVLVDWLGRLQLINEAEQLLGKIS 494 (592)
Q Consensus 424 ~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~---g~~------p~~~ty~~li~~~~~~g~~~~A~~l~~~m~ 494 (592)
...+-.+.....|.+...+...|++.+|...|...... -.. ++..+--.+.+++-..++++.|.+.|..+.
T Consensus 444 ~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Il 523 (1018)
T KOG2002|consen 444 ESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSIL 523 (1018)
T ss_pred HHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 34455578889999999999999999999999887654 112 333344456677778889999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-CCCCHH
Q 007695 495 ELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQG-FAASER 573 (592)
Q Consensus 495 ~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~g-~~pd~~ 573 (592)
+..+. -+..|.-+..+....++..+|...++..... ..-++..++.+...+.....+.-|.+-|..+.+.- ..+|..
T Consensus 524 kehp~-YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~-d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Y 601 (1018)
T KOG2002|consen 524 KEHPG-YIDAYLRLGCMARDKNNLYEASLLLKDALNI-DSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAY 601 (1018)
T ss_pred HHCch-hHHHHHHhhHHHHhccCcHHHHHHHHHHHhc-ccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchh
Confidence 86432 2234444443444457888899999888776 45578888888889999999999999887777552 235554
Q ss_pred HHHHHHhhhhhccCCCCCC
Q 007695 574 LKVALISSQTFNRQRQPTR 592 (592)
Q Consensus 574 ~~~~l~~~~~~~~l~qp~r 592 (592)
..++|-+ .....+.+|+|
T Consensus 602 sliaLGN-~~~~~l~~~~r 619 (1018)
T KOG2002|consen 602 SLIALGN-VYIQALHNPSR 619 (1018)
T ss_pred HHHHhhH-HHHHHhccccc
Confidence 4444444 34444444443
No 39
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.37 E-value=6.8e-09 Score=102.92 Aligned_cols=300 Identities=14% Similarity=0.077 Sum_probs=232.4
Q ss_pred HHHHHHHH--cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 007695 262 KLIDAHAK--ENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVN 339 (592)
Q Consensus 262 ~Li~~~~~--~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~ 339 (592)
.+..+..+ .|++..|+++..+-.+++-.| ...|..-..+.-..|+.+.+-.++.+.-+..-.++...+-+.......
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~ 165 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLN 165 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHh
Confidence 34444433 699999999999988876543 445666777888899999999999999876335667777788888999
Q ss_pred cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHHcCC
Q 007695 340 AGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL-------ESCTLLVEAYGQAGD 412 (592)
Q Consensus 340 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~-------~~~~~Li~~~~~~g~ 412 (592)
.|+++.|..-++++.+.+.. ++.......++|.+.|++.....++..+.+.+.-.+. .+|..++.-....+.
T Consensus 166 ~~d~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~ 244 (400)
T COG3071 166 RRDYPAARENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNG 244 (400)
T ss_pred CCCchhHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999887644 7788999999999999999999999999998865553 356666666655556
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007695 413 PDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492 (592)
Q Consensus 413 ~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~ 492 (592)
.+.-...++..... .+-+...-.+++.-+.+.|+.++|.++..+..+.+..|+. +..-.+.+.++...-.+..+.
T Consensus 245 ~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~ 319 (400)
T COG3071 245 SEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEK 319 (400)
T ss_pred chHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHH
Confidence 66655566655442 3334555667788889999999999999999888777762 222345566777777777776
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC
Q 007695 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAAS 571 (592)
Q Consensus 493 m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~g~~pd 571 (592)
-.+.... ++..+.+|...|.+.+.+.+|...|+...+ ..|+..+|+.+..+|.+.|+..+|.+++++-...-..|+
T Consensus 320 ~l~~h~~-~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 320 WLKQHPE-DPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred HHHhCCC-ChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 6655333 558899999999999999999999996665 578899999999999999999999999998875544444
No 40
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.36 E-value=4.4e-09 Score=101.26 Aligned_cols=295 Identities=17% Similarity=0.205 Sum_probs=219.8
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH------HHHHH
Q 007695 225 WINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIV------TSTVL 298 (592)
Q Consensus 225 ~~~lL~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~------~~~~L 298 (592)
|-+=++.+.+...+.+++.+-.+.+.. +-+..+.-+|.+.|-+.|.++.|+++.+.+..+ ||.. ..-.|
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL 113 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQED--PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQL 113 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcC--chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHH
Confidence 444444444555555666666655422 334456678899999999999999999999886 5532 34567
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHh
Q 007695 299 VHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSE----EIYLALLRSFAQ 374 (592)
Q Consensus 299 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~Ll~~~~~ 374 (592)
..-|...|-++.|.++|..+.+.| .--......|+..|-...+|++|++.-+++...+-.+.. ..|.-|...+..
T Consensus 114 ~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~ 192 (389)
T COG2956 114 GRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA 192 (389)
T ss_pred HHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhh
Confidence 788889999999999999999755 334567888999999999999999999999887654432 345666677777
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007695 375 CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454 (592)
Q Consensus 375 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l 454 (592)
..+.+.|...+.+..+.+ +.++.+--.+...+...|+++.|.+.++...+.++..-..+...+..+|.+.|+.++...+
T Consensus 193 ~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~f 271 (389)
T COG2956 193 SSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNF 271 (389)
T ss_pred hhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 889999999999998876 4556666778889999999999999999999976655567788899999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHH
Q 007695 455 LLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARA---GIEKKALQALGFLEA 530 (592)
Q Consensus 455 ~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~---g~~~~A~~~~~~m~~ 530 (592)
+..+.+.. ++...-..+-+......-.+.|...+.+-... +|+...+..|+..-... |...+.+..++.|..
T Consensus 272 L~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 272 LRRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred HHHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 99998864 33333444444444455566666666555443 58899999999876543 445556666666654
No 41
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.36 E-value=3.4e-10 Score=118.48 Aligned_cols=287 Identities=16% Similarity=0.046 Sum_probs=223.2
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCchHHHHH
Q 007695 272 CLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHG--FQPDKKVYNSMIMAYVNAGQPKLGMSL 349 (592)
Q Consensus 272 ~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g--~~pd~~t~~~li~a~~~~g~~~~A~~l 349 (592)
+..+|...|..+..+ +.-+..+...+..+|...+++++|.++|+.+.+.. ..-+..+|.+.+.-+-+ +-++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 467899999997665 33344566778899999999999999999998652 12366788888776532 223333
Q ss_pred HH-HHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 007695 350 VD-MMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGH 428 (592)
Q Consensus 350 ~~-~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~ 428 (592)
+. .+.+. -+-.+.+|.++.++|.-.++.+.|.+.|++..+.+ +....+|+.+..-+.....+|.|...|+....
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--- 483 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALG--- 483 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhc---
Confidence 32 33333 34468999999999999999999999999999875 44789999999999999999999999998876
Q ss_pred CCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHH
Q 007695 429 KPDDRCTA---SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQ 505 (592)
Q Consensus 429 ~pd~~t~~---~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~ 505 (592)
.|...|+ .+.-.|.+.++++.|.-.|+...+-+ +-+.+....+...+.+.|+.++|++++++......+ |+-.-
T Consensus 484 -~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~ 560 (638)
T KOG1126|consen 484 -VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCK 560 (638)
T ss_pred -CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhH
Confidence 4555554 56678999999999999999887743 334566777778889999999999999999987766 44444
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH
Q 007695 506 VSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASE 572 (592)
Q Consensus 506 ~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~g~~pd~ 572 (592)
-.-+..+...+++++|+..++++.+. .+-+...|..+...|.+.|+.+.|+.-|.-+.+..-++..
T Consensus 561 ~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 561 YHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 44556677889999999999999885 3334556888899999999999999999988876544444
No 42
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.35 E-value=5.9e-09 Score=113.25 Aligned_cols=361 Identities=13% Similarity=0.098 Sum_probs=227.1
Q ss_pred ccCCchhHHHHHHhh--cCCCHhhHHHHHHHHH-hh-----CHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHH
Q 007695 203 KEEDPSPLLAEWKEL--LQPSRIDWINLLDRLR-EQ-----NTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLE 274 (592)
Q Consensus 203 ~~g~~~~A~~~~~~~--~~p~~~t~~~lL~~~~-~~-----~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~ 274 (592)
+.|++..|..-|+.. ..||..--..+|.++. .. ..+.+..+....... .+.|...|-.+...+-... ..
T Consensus 354 ~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~--~~~d~~a~l~laql~e~~d-~~ 430 (1018)
T KOG2002|consen 354 KRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ--TPVDSEAWLELAQLLEQTD-PW 430 (1018)
T ss_pred HhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc--ccccHHHHHHHHHHHHhcC-hH
Confidence 555555555555554 2344444444444441 11 123333333333222 2344445554444444333 33
Q ss_pred HHHHHHHHH----HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCC------CCHHHHHHHHHHHHHcC
Q 007695 275 DAERILKKM----NENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSH---GFQ------PDKKVYNSMIMAYVNAG 341 (592)
Q Consensus 275 ~A~~l~~~m----~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~---g~~------pd~~t~~~li~a~~~~g 341 (592)
.++.+|... ...+-.+-....|.+...+...|++++|...|...+.. ... +++.+-..+...+-..+
T Consensus 431 ~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~ 510 (1018)
T KOG2002|consen 431 ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELH 510 (1018)
T ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhh
Confidence 334444432 33444456666677777777777777777777666543 111 22223334455555566
Q ss_pred CchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007695 342 QPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFD 421 (592)
Q Consensus 342 ~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~ 421 (592)
+.+.|.+.|....... +--...|.-++......+...+|...++.....+ ..+...++.+...|.+...+..|..-|.
T Consensus 511 ~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~ 588 (1018)
T KOG2002|consen 511 DTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFE 588 (1018)
T ss_pred hhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHH
Confidence 7777777777776642 1123334444433334466777888888777665 5667777778888888888888888776
Q ss_pred HHHHc-CCCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007695 422 YMIRL-GHKPDDRCTASMIAAYGK------------KNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQ 488 (592)
Q Consensus 422 ~m~~~-g~~pd~~t~~~li~a~~~------------~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ 488 (592)
...+. ...+|..+.-.|-+.|.+ .+..++|+++|.+.++.. +-|...-+-+.-+++..|++..|..
T Consensus 589 ~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~d 667 (1018)
T KOG2002|consen 589 TILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARD 667 (1018)
T ss_pred HHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHH
Confidence 66553 223566666566655532 345788999998887753 3455666667778899999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 007695 489 LLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKK-EQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQG 567 (592)
Q Consensus 489 l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~g 567 (592)
+|.+..+.... ...+|..+.++|..+|++..|.++|+....+- ..-++...+.|..++.+.|.+.+|.+.+......
T Consensus 668 IFsqVrEa~~~-~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~- 745 (1018)
T KOG2002|consen 668 IFSQVREATSD-FEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL- 745 (1018)
T ss_pred HHHHHHHHHhh-CCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-
Confidence 99999987553 56789999999999999999999999876542 3446778899999999999999999988777654
Q ss_pred CCCCH
Q 007695 568 FAASE 572 (592)
Q Consensus 568 ~~pd~ 572 (592)
.|..
T Consensus 746 -~p~~ 749 (1018)
T KOG2002|consen 746 -APSN 749 (1018)
T ss_pred -CCcc
Confidence 4444
No 43
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=1.2e-08 Score=102.56 Aligned_cols=293 Identities=14% Similarity=0.114 Sum_probs=227.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcC
Q 007695 264 IDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGF--QPDKKVYNSMIMAYVNAG 341 (592)
Q Consensus 264 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~--~pd~~t~~~li~a~~~~g 341 (592)
..++-.....+++.+=.+.....|++-+...-+....+.-...++++|..+|+++.+... --|..+|..++-.-....
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~s 313 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhH
Confidence 345566678888998888899988886666666666677788999999999999987631 125677777765432222
Q ss_pred CchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007695 342 QPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFD 421 (592)
Q Consensus 342 ~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~ 421 (592)
.+.++.+-.-.--+--+.|+..+.+-|.-.++.++|...|+...+.+ +....+|+.+.+-|...++...|..-++
T Consensus 314 ----kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 314 ----KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred ----HHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 22222222211112345788889999999999999999999999886 6668899999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 007695 422 YMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEP-GPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500 (592)
Q Consensus 422 ~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 500 (592)
...+-.+ .|-..|-.+-++|.-.+...-|+-+|++... ++| |...+.+|..+|.+.++.++|.+.|......|-.
T Consensus 389 rAvdi~p-~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt- 464 (559)
T KOG1155|consen 389 RAVDINP-RDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT- 464 (559)
T ss_pred HHHhcCc-hhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-
Confidence 9998654 4889999999999999999999999999877 445 5789999999999999999999999999987755
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCCHHHH---HHHHHHHHhCCCHHHHHHHHHHHHH
Q 007695 501 PFKIQVSLCDMYARAGIEKKALQALGFLEAKK---EQMGPDDF---ERIINGLLAGGFLQDAQRVHGLMEA 565 (592)
Q Consensus 501 ~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~~~---~~li~a~~~~g~~~~A~~l~~~m~~ 565 (592)
+...+..|.+.|.+.++.++|...|+...+.. -..++.+. -.|..-+.+.+++++|..+......
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 77899999999999999999999988765521 11233232 2255667889999999876655543
No 44
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.30 E-value=1.1e-09 Score=114.64 Aligned_cols=284 Identities=14% Similarity=0.024 Sum_probs=217.3
Q ss_pred CHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCCHHHHHH
Q 007695 236 NTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGI--VPDIVTSTVLVHMYSKAGNLDRAKE 313 (592)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~--~pd~~~~~~Li~~~~~~g~~~~A~~ 313 (592)
+..++...+.... .. +.-+..+...+..+|...+++++|+++|+.+.+... .-+...|.+.+--+-+.- ++.
T Consensus 334 ~~~~A~~~~~klp-~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v----~Ls 407 (638)
T KOG1126|consen 334 NCREALNLFEKLP-SH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV----ALS 407 (638)
T ss_pred HHHHHHHHHHhhH-Hh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH----HHH
Confidence 3555666665522 22 222335667888999999999999999999987531 126778888876554422 222
Q ss_pred HH-HHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 007695 314 AF-ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIER-SEEIYLALLRSFAQCGDVRGAGQITNIMRIE 391 (592)
Q Consensus 314 ~~-~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~ 391 (592)
.+ +.+.... +-.+.+|-++.++|.-+++.+.|++.|++.++.+ | ...+|+.+..-+.....+|.|...|+.....
T Consensus 408 ~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld--p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 408 YLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD--PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV 484 (638)
T ss_pred HHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC--CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence 22 2222222 4577899999999999999999999999998754 4 7889999999999999999999999988844
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 007695 392 EFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYT 471 (592)
Q Consensus 392 g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~ 471 (592)
. +.+-.+|.-|...|.+.++++.|+-.|++...-++. +.+....+...+-+.|+.++|+.+|++..... +-|+..--
T Consensus 485 ~-~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~ 561 (638)
T KOG1126|consen 485 D-PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKY 561 (638)
T ss_pred C-chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHH
Confidence 3 333455666788999999999999999999885543 56667777788899999999999999987653 22333444
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 007695 472 VLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKK 532 (592)
Q Consensus 472 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~ 532 (592)
..+..+...+++++|++.++++.+.-.+ +..++..+...|.+.|+.+.|+.-|-.+.+.+
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 4556678889999999999999986544 67889999999999999999999998887653
No 45
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.27 E-value=3.4e-10 Score=121.21 Aligned_cols=268 Identities=17% Similarity=0.084 Sum_probs=155.5
Q ss_pred hhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH
Q 007695 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDK 327 (592)
Q Consensus 248 ~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 327 (592)
+...|+.||.+||..+|.-||..|+++.|- +|..|.....+.+...|+.++.+...+++.+.+. .|..
T Consensus 16 ~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~a 83 (1088)
T KOG4318|consen 16 HEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLA 83 (1088)
T ss_pred HHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCch
Confidence 345566777777777777777777777666 7777766666666667777777766666666554 4666
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHH
Q 007695 328 KVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE-EFQPTLESCTLLVEA 406 (592)
Q Consensus 328 ~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~Li~~ 406 (592)
.||+.|..+|...|+... |+...+ -.-.+...+...|.......++..+... +.-||.. ..+..
T Consensus 84 Dtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~ill 148 (1088)
T KOG4318|consen 84 DTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILL 148 (1088)
T ss_pred hHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHH
Confidence 677777777777776654 222221 1222334444555544444444443222 2223322 23344
Q ss_pred HHHcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 007695 407 YGQAGDPDQARSNFDYMIRLGH-KPDDRCTASMIAAYGKKNL-LDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLIN 484 (592)
Q Consensus 407 ~~~~g~~~~A~~lf~~m~~~g~-~pd~~t~~~li~a~~~~g~-~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~ 484 (592)
....|.++.+.+++..+..... .|-.+ ++.-+...+. +++-..+-+...+ .|++.+|.+++.+-..+|+.+
T Consensus 149 lv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d 221 (1088)
T KOG4318|consen 149 LVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVD 221 (1088)
T ss_pred HHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchh
Confidence 4455666666666655543211 11111 2333333322 2332222222222 577777777777777777777
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Q 007695 485 EAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGF 552 (592)
Q Consensus 485 ~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~ 552 (592)
.|..++.+|.+.|+..+..-|-.|+-+ .++..-+..+++.|.+.|+.|+..|+...+..+...|.
T Consensus 222 ~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 222 GAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred hHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 777777777777777666655555544 66667777777777777777777777777666666444
No 46
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.27 E-value=6.2e-09 Score=100.25 Aligned_cols=200 Identities=17% Similarity=0.103 Sum_probs=127.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007695 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335 (592)
Q Consensus 256 ~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~ 335 (592)
....+..+...+...|++++|.+.+++..+.. +.+...+..+...|...|++++|.+.|++..+.. +.+...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 34556677777777888888888887776653 2245666777777777777777777777777653 345566667777
Q ss_pred HHHHcCCchHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 007695 336 AYVNAGQPKLGMSLVDMMITSGI-ERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPD 414 (592)
Q Consensus 336 a~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~ 414 (592)
.+...|++++|...+.+...... ......+..+..++...|++++|...+.+..... +.+...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHH
Confidence 77777777777777777765321 1233455556666666677777776666666543 334555666666666666666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007695 415 QARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELE 459 (592)
Q Consensus 415 ~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~ 459 (592)
+|...+++.... ...+...+..+...+...|+.++|..+.+.+.
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 666666666554 22234444455555666666666666655543
No 47
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.26 E-value=7e-09 Score=99.85 Aligned_cols=200 Identities=15% Similarity=0.099 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007695 362 EEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAA 441 (592)
Q Consensus 362 ~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a 441 (592)
...+..+...|...|++++|...+++..... +.+...+..+...|...|++++|...|++....... +...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence 3444555555555555555555555555443 333455555555666666666666666655554322 33444555555
Q ss_pred HHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHH
Q 007695 442 YGKKNLLDKALNLLLELEKDGF-EPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKK 520 (592)
Q Consensus 442 ~~~~g~~~~A~~l~~~m~~~g~-~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~ 520 (592)
|...|++++|...+........ ......+..+..++...|++++|...+.+....... +...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHH
Confidence 6666666666666666554321 122344555556666667777777776666654332 45566666667777777777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 007695 521 ALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEA 565 (592)
Q Consensus 521 A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~ 565 (592)
|...+++.... .+.++..+..+...+...|+.++|..+.+.+..
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 77777766654 233455555666666677777777776666543
No 48
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=3.4e-08 Score=99.35 Aligned_cols=290 Identities=13% Similarity=0.091 Sum_probs=218.6
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHhCCCCCC
Q 007695 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIV--PDIVTSTVLVHMYSKAGNLD-RAKEAFESLRSHGFQPD 326 (592)
Q Consensus 250 ~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~--pd~~~~~~Li~~~~~~g~~~-~A~~~~~~m~~~g~~pd 326 (592)
..|++-+...-+....+.-...++++|+.+|+++.++.+- -|..+|+.++-.-..+..+. .|..+++ .- +--
T Consensus 255 ~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~-id----KyR 329 (559)
T KOG1155|consen 255 SVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSN-ID----KYR 329 (559)
T ss_pred hccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHH-hc----cCC
Confidence 4566655555555555667788999999999999987321 16778888775544433332 2333322 22 234
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007695 327 KKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEA 406 (592)
Q Consensus 327 ~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~ 406 (592)
+.|...+.+-|.-.++.++|...|++.++.+.. ....|+.+..-|....+...|...++...+.. +.|-..|-.|..+
T Consensus 330 ~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQa 407 (559)
T KOG1155|consen 330 PETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQA 407 (559)
T ss_pred ccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHH
Confidence 457778888899999999999999999987533 56788999999999999999999999999886 7889999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 007695 407 YGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486 (592)
Q Consensus 407 ~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A 486 (592)
|.-.+...-|+-.|++.....+ -|...|.+|-.+|.+.++.++|++.|.+....| ..+...|..|...|-+.++..+|
T Consensus 408 Yeim~Mh~YaLyYfqkA~~~kP-nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eA 485 (559)
T KOG1155|consen 408 YEIMKMHFYALYYFQKALELKP-NDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEA 485 (559)
T ss_pred HHHhcchHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHH
Confidence 9999999999999999988544 388999999999999999999999999998876 44678899999999999999999
Q ss_pred HHHHHHHHhc----CCC-C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 007695 487 EQLLGKISEL----GEA-P-PFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVH 560 (592)
Q Consensus 487 ~~l~~~m~~~----g~~-p-~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~ 560 (592)
.+.|.+.++. |.. | ......-|...+.+.+++++|.......... ....++|..++
T Consensus 486 a~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~------------------~~e~eeak~Ll 547 (559)
T KOG1155|consen 486 AQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG------------------ETECEEAKALL 547 (559)
T ss_pred HHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC------------------CchHHHHHHHH
Confidence 9999887652 322 2 2233334666677788877776544333221 23446666677
Q ss_pred HHHHHC
Q 007695 561 GLMEAQ 566 (592)
Q Consensus 561 ~~m~~~ 566 (592)
+++...
T Consensus 548 Reir~~ 553 (559)
T KOG1155|consen 548 REIRKI 553 (559)
T ss_pred HHHHHh
Confidence 666543
No 49
>PRK12370 invasion protein regulator; Provisional
Probab=99.24 E-value=1.3e-08 Score=111.99 Aligned_cols=250 Identities=11% Similarity=0.001 Sum_probs=154.6
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH---------cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC
Q 007695 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVN---------AGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGD 377 (592)
Q Consensus 307 ~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~---------~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~ 377 (592)
++++|...|++..+.. +-+...|..+..+|.. .+++++|...+++..+.+. -+...+..+...+...|+
T Consensus 276 ~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP-~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 276 SLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDH-NNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHccC
Confidence 3567777777777652 2234455555444432 2346778888888777643 266777777777788888
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007695 378 VRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLE 457 (592)
Q Consensus 378 ~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~ 457 (592)
+++|...|++..+.+ +.+...+..+...|...|++++|...+++..+..+.+ ...+..++..+...|++++|...+++
T Consensus 354 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~-~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 354 YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTR-AAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-hhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 888888888887775 4556777778888888888888888888887754432 22223334445567788888888887
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC
Q 007695 458 LEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKE-QMG 536 (592)
Q Consensus 458 m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~-~~~ 536 (592)
..+...+-+...+..+..++...|++++|...+.++...... +....+.+...|...| +.|...++.+.+... .+.
T Consensus 432 ~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~ 508 (553)
T PRK12370 432 LRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-GLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDN 508 (553)
T ss_pred HHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-hHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhc
Confidence 765432223445666777777888888888888776554222 3444555555666666 466666666554211 111
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 007695 537 PDDFERIINGLLAGGFLQDAQRVHGLMEAQ 566 (592)
Q Consensus 537 ~~~~~~li~a~~~~g~~~~A~~l~~~m~~~ 566 (592)
. +..+-..|.-.|+.+.+... +++.+.
T Consensus 509 ~--~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 509 N--PGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred C--chHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 1 11133444556666665544 666654
No 50
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.20 E-value=2.5e-07 Score=92.02 Aligned_cols=286 Identities=15% Similarity=0.080 Sum_probs=222.2
Q ss_pred HhhCHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007695 233 REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312 (592)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~ 312 (592)
..|++..+.+.+...- +.+-. ....|..-..+.-+.|+.+.+-.++.+..+.--.++...+-+........|+++.|.
T Consensus 96 ~eG~~~qAEkl~~rna-e~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~ 173 (400)
T COG3071 96 FEGDFQQAEKLLRRNA-EHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAR 173 (400)
T ss_pred hcCcHHHHHHHHHHhh-hcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHH
Confidence 4566666666555432 22222 223455666777889999999999999988644567777888888999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhCCCHHHHHHHH
Q 007695 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSE-------EIYLALLRSFAQCGDVRGAGQIT 385 (592)
Q Consensus 313 ~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~-------~t~~~Ll~~~~~~g~~~~A~~~~ 385 (592)
.-.+++.+.+ +.++........+|.+.|++.....++..|.+.|.--+. .+|..+++-....+..+.-...+
T Consensus 174 ~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 174 ENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 9999998876 667889999999999999999999999999998865444 35777777777777777766677
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCC
Q 007695 386 NIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKD-GFE 464 (592)
Q Consensus 386 ~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~-g~~ 464 (592)
+.....- ..+...-.+++.-+.++|+.++|.++..+..+++..|.. ...-.+.+-++...-++..+.-.+. +..
T Consensus 253 ~~~pr~l-r~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~~ 327 (400)
T COG3071 253 KNQPRKL-RNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPED 327 (400)
T ss_pred HhccHHh-hcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCCC
Confidence 7766542 445677778889999999999999999998887766652 2233566778887777777665443 444
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007695 465 PGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEA 530 (592)
Q Consensus 465 p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~ 530 (592)
| ..+.+|-..|.+.+.+.+|...|+...+ ..|+..+|+.+.++|.+.|+..+|.+++++...
T Consensus 328 p--~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 328 P--LLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred h--hHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4 7788899999999999999999997665 568999999999999999999999999887654
No 51
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.20 E-value=1.1e-09 Score=117.28 Aligned_cols=264 Identities=16% Similarity=0.143 Sum_probs=147.8
Q ss_pred cCCCHhhHHHHHHHHHhhC-HHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 007695 218 LQPSRIDWINLLDRLREQN-TQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTST 296 (592)
Q Consensus 218 ~~p~~~t~~~lL~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~ 296 (592)
..|+++||.+++..++..+ .+.+. .+. +++..+.+.+...++.++.+..+.++.+.+. .|-..||+
T Consensus 21 i~PnRvtyqsLiarYc~~gdieaat-if~-fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt 87 (1088)
T KOG4318|consen 21 ILPNRVTYQSLIARYCTKGDIEAAT-IFP-FMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYT 87 (1088)
T ss_pred CCCchhhHHHHHHHHcccCCCcccc-chh-hhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHH
Confidence 6677777777777775433 33333 332 3334445556666777777777777766555 46677777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhC
Q 007695 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMIT-SGIERSEEIYLALLRSFAQC 375 (592)
Q Consensus 297 ~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~Ll~~~~~~ 375 (592)
.|..+|...||+.. |+...+ -.-.+...+...|.......++....- .+.-||..+ ++......
T Consensus 88 ~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~illlv~e 152 (1088)
T KOG4318|consen 88 NLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILLLVLE 152 (1088)
T ss_pred HHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHHHHHH
Confidence 77777777777655 222221 122333444455555555444444321 123334332 33334445
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007695 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLL 455 (592)
Q Consensus 376 g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~ 455 (592)
|-++.+.+++..++...-.- .... ++.-+.. ......++.+......-.|++.+|..++.+-.-+|+.+.|..++
T Consensus 153 glwaqllkll~~~Pvsa~~~-p~~v--fLrqnv~--~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll 227 (1088)
T KOG4318|consen 153 GLWAQLLKLLAKVPVSAWNA-PFQV--FLRQNVV--DNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLL 227 (1088)
T ss_pred HHHHHHHHHHhhCCcccccc-hHHH--HHHHhcc--CCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHH
Confidence 66666666665554332111 1111 1221111 12222333333322111477777777777777777777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCC
Q 007695 456 LELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGI 517 (592)
Q Consensus 456 ~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~ 517 (592)
.+|.+.|++.+.+-|-.|+-+ .++...+..+++-|.+.|+.|+..|+...+..+.+.|.
T Consensus 228 ~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 228 YEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 777777777777666666644 66666777777777777777777777776666666444
No 52
>PRK12370 invasion protein regulator; Provisional
Probab=99.19 E-value=3.7e-08 Score=108.33 Aligned_cols=265 Identities=12% Similarity=-0.014 Sum_probs=189.1
Q ss_pred CCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHH---------cCCHHHHHHHHHHHH
Q 007695 255 TNVRDYSKLIDAHAK-----ENCLEDAERILKKMNENGIVP-DIVTSTVLVHMYSK---------AGNLDRAKEAFESLR 319 (592)
Q Consensus 255 p~~~~y~~Li~~~~~-----~g~~~~A~~l~~~m~~~g~~p-d~~~~~~Li~~~~~---------~g~~~~A~~~~~~m~ 319 (592)
.+...|...+.+-.. .+++++|..+|++..+. .| +...|..+..+|.. .+++++|...+++..
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 455566666665322 23468999999999886 44 45566666555542 245889999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Q 007695 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLES 399 (592)
Q Consensus 320 ~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 399 (592)
+.. +.+..++..+...+...|++++|...|++..+.+ +.+...+..+..+|...|++++|...++...+.. +.+...
T Consensus 332 ~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-P~~~~~ 408 (553)
T PRK12370 332 ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD-PTRAAA 408 (553)
T ss_pred hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCChhh
Confidence 875 5578888899899999999999999999999875 3357788889999999999999999999999875 333444
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHH
Q 007695 400 CTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGP-ATYTVLVDWLG 478 (592)
Q Consensus 400 ~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~-~ty~~li~~~~ 478 (592)
+..++..+...|++++|...+++.......-+...+..+..+|...|+.++|...+.++... .|+. ...+.+...|.
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~ 486 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYC 486 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHh
Confidence 44455567778999999999999876532224455677778888999999999999887553 3443 33445555666
Q ss_pred HcCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 007695 479 RLQLINEAEQLLGKISELGE-APPFKIQVSLCDMYARAGIEKKALQALGFLEAK 531 (592)
Q Consensus 479 ~~g~~~~A~~l~~~m~~~g~-~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~ 531 (592)
..| +.+...++.+.+... .+....+ +-..|.-.|+-+.+..+ +++.+.
T Consensus 487 ~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 487 QNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred ccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 666 477777777654321 2222222 44446667777777666 777654
No 53
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.18 E-value=5.2e-07 Score=94.40 Aligned_cols=300 Identities=14% Similarity=0.041 Sum_probs=186.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007695 258 RDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337 (592)
Q Consensus 258 ~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~ 337 (592)
..|-.....+...|++..|..++....+.... +...|-+-+..-..+..++.|..+|.+.... .|+...|.--++.-
T Consensus 585 ~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~e 661 (913)
T KOG0495|consen 585 ILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLE 661 (913)
T ss_pred hHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHH
Confidence 33444445555566666666666666554322 5555666666666666666666666665543 45666665555555
Q ss_pred HHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007695 338 VNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQAR 417 (592)
Q Consensus 338 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~ 417 (592)
--.+..++|++++++.++. ++.-.-.|..+.+.+-+.++++.|...|..-.+. ++-....|-.|...=-+.|++-.|.
T Consensus 662 r~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR 739 (913)
T KOG0495|consen 662 RYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRAR 739 (913)
T ss_pred HHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHH
Confidence 5566666666666666553 2222345555566666666666666665544332 2334455666666666666666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 007695 418 SNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497 (592)
Q Consensus 418 ~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g 497 (592)
.+|+..+-.+++ +...|-..|..=.+.|+.++|..++.+.++. ++.+...|..-|....+.++-......+++.
T Consensus 740 ~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkc---- 813 (913)
T KOG0495|consen 740 SILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC---- 813 (913)
T ss_pred HHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhc----
Confidence 666666665543 5566666666666667776666666555443 3334455555555554444433333222222
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH
Q 007695 498 EAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASE 572 (592)
Q Consensus 498 ~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~g~~pd~ 572 (592)
.-|+.+..++...|-...++++|...|.+....+ +-+-++|.-+...+.++|.-++-.+++...... +|..
T Consensus 814 -e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~h 884 (913)
T KOG0495|consen 814 -EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTH 884 (913)
T ss_pred -cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCC
Confidence 2367778888888888999999999999998864 335678998999999999988888999888754 5555
No 54
>PF13041 PPR_2: PPR repeat family
Probab=99.17 E-value=6.6e-11 Score=84.94 Aligned_cols=47 Identities=34% Similarity=0.645 Sum_probs=19.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007695 291 DIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337 (592)
Q Consensus 291 d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~ 337 (592)
|+.+||++|++|++.|++++|.++|++|.+.|++||..||+.||++|
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~ 48 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGL 48 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444443
No 55
>PF13041 PPR_2: PPR repeat family
Probab=99.17 E-value=6.7e-11 Score=84.90 Aligned_cols=50 Identities=32% Similarity=0.518 Sum_probs=48.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 007695 255 TNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSK 304 (592)
Q Consensus 255 p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~ 304 (592)
||+.+||++|++|++.|++++|.++|++|.+.|+.||..||+.||++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999975
No 56
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.15 E-value=1.2e-08 Score=101.80 Aligned_cols=172 Identities=15% Similarity=0.082 Sum_probs=129.3
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007695 408 GQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487 (592)
Q Consensus 408 ~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~ 487 (592)
...|++++|.+.+++.....-.-....|| +--.+-..|++++|+..|-.+..- +.-+...+..+...|....+..+|.
T Consensus 501 f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqai 578 (840)
T KOG2003|consen 501 FANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAI 578 (840)
T ss_pred eecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHH
Confidence 34678999999999888743222222333 333567789999999999887542 2345677778888899999999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 007695 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQG 567 (592)
Q Consensus 488 ~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~g 567 (592)
+++.+.... ++.|+.+..-|...|-+.|+-..|.+..-.--.- ++.+..+..-|..-|.....+++|+.+|++.- -
T Consensus 579 e~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaa--l 654 (840)
T KOG2003|consen 579 ELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--L 654 (840)
T ss_pred HHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--h
Confidence 999887765 4448899999999999999999998875433222 56678888888999999999999999999874 4
Q ss_pred CCCCH-HHHHHHHhhhhhc
Q 007695 568 FAASE-RLKVALISSQTFN 585 (592)
Q Consensus 568 ~~pd~-~~~~~l~~~~~~~ 585 (592)
+.|+. .+...+-.|.+..
T Consensus 655 iqp~~~kwqlmiasc~rrs 673 (840)
T KOG2003|consen 655 IQPNQSKWQLMIASCFRRS 673 (840)
T ss_pred cCccHHHHHHHHHHHHHhc
Confidence 79999 5555555555544
No 57
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.15 E-value=3.2e-09 Score=102.07 Aligned_cols=228 Identities=14% Similarity=0.112 Sum_probs=138.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHh
Q 007695 296 TVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIY-LALLRSFAQ 374 (592)
Q Consensus 296 ~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~Ll~~~~~ 374 (592)
+.+.++|.+.|-+.+|.+.|+.-++. .|-+.||-.|-.+|.+..++..|+.++.+-++. .|-.+|| .-..+.+-.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHH
Confidence 45666777777777777777666655 566666767777777777777777777666553 3333443 334555666
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007695 375 CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454 (592)
Q Consensus 375 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l 454 (592)
.++.++|.++|+...+.. +.++.+..++...|.-.++++.|+..+..+.+.|+. +...|+.+--+|...+++|-++.-
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 666666777766666554 455666666666666666666666666666666664 555666666666666666666666
Q ss_pred HHHHHHCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007695 455 LLELEKDGFEPGP--ATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEA 530 (592)
Q Consensus 455 ~~~m~~~g~~p~~--~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~ 530 (592)
|.+....-..|+. ..|-.+-......|++..|.+.|+-....+.. +...++.|.-.-.+.|+++.|..++.....
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 6665544333332 33444444455556666666666665554433 455666666666666666666666665544
No 58
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=3.3e-07 Score=92.96 Aligned_cols=223 Identities=13% Similarity=0.068 Sum_probs=176.7
Q ss_pred HHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 007695 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA 416 (592)
Q Consensus 337 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A 416 (592)
+.-.|+.-.|..-|+..+.....+ ...|--+..+|....+.++.++.|+.....+ +-|..+|..-..++.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHH
Confidence 344688889999999998875443 3338888888999999999999999999887 66788999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007695 417 RSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496 (592)
Q Consensus 417 ~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 496 (592)
..=|++.+...+. +...|..+--+..+.+.++++...|++.++. ++--+..|+.....+...++++.|.+.|+..++.
T Consensus 414 ~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 414 IADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 9999999885432 4556666666667888999999999998764 4556789999999999999999999999998865
Q ss_pred CCC-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 007695 497 GEA-------PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEA 565 (592)
Q Consensus 497 g~~-------p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~ 565 (592)
... +.+.+.-+++..--+ +++..|..++.+..+.+ +-....|..|...-.+.|+.++|+++|++-..
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 322 222333344433334 89999999999998763 23455789999999999999999999997654
No 59
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.11 E-value=2.3e-06 Score=89.77 Aligned_cols=304 Identities=11% Similarity=0.030 Sum_probs=188.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007695 258 RDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337 (592)
Q Consensus 258 ~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~ 337 (592)
.+|+.-.+.|.+.+.++-|..+|....+- ++-+...|......--..|..+....+|++....- +-....|-....-+
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~ 594 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEK 594 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHH
Confidence 45666666677777777777777776664 23355556666655556677777777777776552 33445566666666
Q ss_pred HHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007695 338 VNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQAR 417 (592)
Q Consensus 338 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~ 417 (592)
...|+...|..++.+..+.... +...+...+..-.....++.|..+|.+.... .|+...|.--+....-.++.++|.
T Consensus 595 w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~ 671 (913)
T KOG0495|consen 595 WKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEAL 671 (913)
T ss_pred HhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHH
Confidence 6777777777777777665433 6666777777777777777777777766653 456666666666666667777777
Q ss_pred HHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007695 418 SNFDYMIRLGHKPDD-RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496 (592)
Q Consensus 418 ~lf~~m~~~g~~pd~-~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 496 (592)
+++++..+. -|+- ..|..+-+.+-+.++++.|...|..=.+. ++-....|..|...-.+.|.+-.|..++++..-.
T Consensus 672 rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlk 748 (913)
T KOG0495|consen 672 RLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK 748 (913)
T ss_pred HHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence 777666653 2332 34445555666666666666666543221 2223345555555556666777777777776666
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----------------------------CCCCCHHHHHHHHHHH
Q 007695 497 GEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAK-----------------------------KEQMGPDDFERIINGL 547 (592)
Q Consensus 497 g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~-----------------------------~~~~~~~~~~~li~a~ 547 (592)
+.+ +...|-..|.+-.+.|+.+.|..+..+..+. ...-|+...-.+...+
T Consensus 749 NPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lf 827 (913)
T KOG0495|consen 749 NPK-NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLF 827 (913)
T ss_pred CCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHH
Confidence 555 6667777777777777777666654333221 0123344444555566
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCCH
Q 007695 548 LAGGFLQDAQRVHGLMEAQGFAASE 572 (592)
Q Consensus 548 ~~~g~~~~A~~l~~~m~~~g~~pd~ 572 (592)
-...+++.|.+.|.+.... -||.
T Consensus 828 w~e~k~~kar~Wf~Ravk~--d~d~ 850 (913)
T KOG0495|consen 828 WSEKKIEKAREWFERAVKK--DPDN 850 (913)
T ss_pred HHHHHHHHHHHHHHHHHcc--CCcc
Confidence 6667777888888777654 4444
No 60
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.10 E-value=2.4e-07 Score=99.19 Aligned_cols=291 Identities=14% Similarity=0.100 Sum_probs=201.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHHc--
Q 007695 264 IDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVY-NSMIMAYVNA-- 340 (592)
Q Consensus 264 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~-~~li~a~~~~-- 340 (592)
...+...|++++|++.++.-... +.............+.+.|+.++|..+|..+.+.+ |+...| ..+..+....
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcc
Confidence 44567889999999999875554 33345556777888899999999999999999885 555544 4444544222
Q ss_pred ---CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 007695 341 ---GQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV-RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA 416 (592)
Q Consensus 341 ---g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~-~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A 416 (592)
.+.+...++|+++...- |.......+.-.+.....+ ..+...+..+...|+| .+|+.|-..|.......-.
T Consensus 88 ~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAII 162 (517)
T ss_pred cccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHH
Confidence 24567778888886643 3333332222222221222 2455566666777754 3455666666655555555
Q ss_pred HHHHHHHHHc----C----------CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHH
Q 007695 417 RSNFDYMIRL----G----------HKPDD--RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPG-PATYTVLVDWLGR 479 (592)
Q Consensus 417 ~~lf~~m~~~----g----------~~pd~--~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~ 479 (592)
..++...... + -.|.. .++.-+...|...|++++|+.+++..++.. |+ +..|..-.+.+-+
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~ely~~KarilKh 240 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVELYMTKARILKH 240 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHH
Confidence 5666555432 1 12333 244556777889999999999999988853 55 6788889999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH------HH--HHHHHHHHhCC
Q 007695 480 LQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD------DF--ERIINGLLAGG 551 (592)
Q Consensus 480 ~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~------~~--~~li~a~~~~g 551 (592)
.|++.+|...++........ |..+-+-.+..+.++|++++|.+++..+...+..|... .| .....+|.+.|
T Consensus 241 ~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~ 319 (517)
T PF12569_consen 241 AGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQG 319 (517)
T ss_pred CCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999988776 88888888999999999999999998887765433222 23 33468899999
Q ss_pred CHHHHHHHHHHHHH
Q 007695 552 FLQDAQRVHGLMEA 565 (592)
Q Consensus 552 ~~~~A~~l~~~m~~ 565 (592)
++..|++.|.....
T Consensus 320 ~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 320 DYGLALKRFHAVLK 333 (517)
T ss_pred hHHHHHHHHHHHHH
Confidence 99999887766553
No 61
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=7.5e-07 Score=92.09 Aligned_cols=280 Identities=13% Similarity=0.019 Sum_probs=212.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHH
Q 007695 288 IVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367 (592)
Q Consensus 288 ~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 367 (592)
..-+......-..-+-..+++.+..++++.+.+.. +++...+..-|.++...|+..+-..+-.+|.+. .+-.+.+|-+
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~a 317 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFA 317 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhh
Confidence 34456656666677778889999999999888764 667777777788888999988888888888876 3446788888
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CC-CCCHHHHHHHHHHHHh
Q 007695 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL--GH-KPDDRCTASMIAAYGK 444 (592)
Q Consensus 368 Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~--g~-~pd~~t~~~li~a~~~ 444 (592)
+.--|.-.|+..+|.+.|.+....+ +.-...|-.+...|+-.|..++|+..+...-+. |. .| ..| +---|.+
T Consensus 318 Vg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP--~LY--lgmey~~ 392 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLP--SLY--LGMEYMR 392 (611)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcch--HHH--HHHHHHH
Confidence 8888888899999999999877554 333578888999999999999999888776652 33 22 222 3335778
Q ss_pred cCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CC-C-CCHHHHHHHHHHHHHcCC
Q 007695 445 KNLLDKALNLLLELEKDGFEP-GPATYTVLVDWLGRLQLINEAEQLLGKISEL----GE-A-PPFKIQVSLCDMYARAGI 517 (592)
Q Consensus 445 ~g~~~~A~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~----g~-~-p~~~~~~~Li~~~~~~g~ 517 (592)
.++...|.++|.+... +.| |+..++-+.-.....+.+.+|..+|+..... +. . --..+++.|..+|.+.+.
T Consensus 393 t~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~ 470 (611)
T KOG1173|consen 393 TNNLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNK 470 (611)
T ss_pred hccHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhh
Confidence 8999999999988655 444 4566666666666778889999988876521 11 1 134568888999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007695 518 EKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579 (592)
Q Consensus 518 ~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~l~ 579 (592)
+++|+..+++.... .+.++.++.++.-.|...|+.+.|+..|.+.+ .+.||.++...++
T Consensus 471 ~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL 529 (611)
T KOG1173|consen 471 YEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELL 529 (611)
T ss_pred HHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHH
Confidence 99999999988876 45578889999999999999999999998876 4688884444333
No 62
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.03 E-value=3e-08 Score=95.50 Aligned_cols=234 Identities=11% Similarity=0.035 Sum_probs=199.2
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 007695 331 NSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQA 410 (592)
Q Consensus 331 ~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~ 410 (592)
+.|..+|.+.|.+.+|.+.++.-+.. .|-+.||..|-+.|.+..+...|+.++.+-...- +.|+....-+...+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence 57889999999999999999988875 4678899999999999999999999999988764 56666667788889999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 007695 411 GDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490 (592)
Q Consensus 411 g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~ 490 (592)
++.++|.++++...+... .+.....++...|...++++.|+.+|+++...|+ -++..|+.+.-+|.-.+++|-++..|
T Consensus 304 ~~~~~a~~lYk~vlk~~~-~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHP-INVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcCC-ccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHH
Confidence 999999999999988533 3677778888899999999999999999999996 46788999999999999999999999
Q ss_pred HHHHhcCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC
Q 007695 491 GKISELGEAP--PFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGF 568 (592)
Q Consensus 491 ~~m~~~g~~p--~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~g~ 568 (592)
++....--.| -..+|-.|.......|++..|.+.|+.....+ .-....+|.|...-.+.|+.++|..+++...+.
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~-- 458 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSV-- 458 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh--
Confidence 9887654433 35678888888889999999999999887764 335677999988889999999999999988754
Q ss_pred CCCH
Q 007695 569 AASE 572 (592)
Q Consensus 569 ~pd~ 572 (592)
-|+.
T Consensus 459 ~P~m 462 (478)
T KOG1129|consen 459 MPDM 462 (478)
T ss_pred Cccc
Confidence 5554
No 63
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=1.5e-05 Score=79.55 Aligned_cols=319 Identities=13% Similarity=0.019 Sum_probs=227.6
Q ss_pred CCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-
Q 007695 252 SFQTNVRDYSKLIDAHAKE--NCLEDAERILKKMNENG-IVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDK- 327 (592)
Q Consensus 252 ~~~p~~~~y~~Li~~~~~~--g~~~~A~~l~~~m~~~g-~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~- 327 (592)
...|+..+...-|.+++.. ++-..|.+++-.+.... ++-|+.....+..++...|+.++|...|++.... .|+.
T Consensus 189 ~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i 266 (564)
T KOG1174|consen 189 TVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNV 266 (564)
T ss_pred ecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--Chhhh
Confidence 3455555555556665553 44445555554444332 5557888899999999999999999999998854 3332
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007695 328 KVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAY 407 (592)
Q Consensus 328 ~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~ 407 (592)
.......-.+.+.|+.+....+...+.... .-+...|..-........++..|+.+-.+..+.. +.++..|-.-...+
T Consensus 267 ~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL 344 (564)
T KOG1174|consen 267 EAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLL 344 (564)
T ss_pred hhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHH
Confidence 223333445567889988888888887642 2344445555555666788899999988888765 56677777777889
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHH-HcCCHHH
Q 007695 408 GQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV-DWLG-RLQLINE 485 (592)
Q Consensus 408 ~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li-~~~~-~~g~~~~ 485 (592)
.+.|++++|.-.|+......+ -+..+|..++.+|...|.+.+|..+-+...+. ++-+..+.+.+. ..|. ....-++
T Consensus 345 ~~~~R~~~A~IaFR~Aq~Lap-~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEK 422 (564)
T KOG1174|consen 345 IALERHTQAVIAFRTAQMLAP-YRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREK 422 (564)
T ss_pred HhccchHHHHHHHHHHHhcch-hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHH
Confidence 999999999999998877432 37889999999999999999998777665442 233445554442 2222 2233577
Q ss_pred HHHHHHHHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 007695 486 AEQLLGKISELGEAPP-FKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLME 564 (592)
Q Consensus 486 A~~l~~~m~~~g~~p~-~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~ 564 (592)
|.++++...+. .|+ ....+.+...+...|..+.+..+++.... ..+|....+.|...+...+.+++|+..|....
T Consensus 423 AKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~AL 498 (564)
T KOG1174|consen 423 AKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKAL 498 (564)
T ss_pred HHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 88888887764 344 35667788889999999999999998766 46788888999999999999999999998887
Q ss_pred HCCCCCCH-HHHHHHHhhh
Q 007695 565 AQGFAASE-RLKVALISSQ 582 (592)
Q Consensus 565 ~~g~~pd~-~~~~~l~~~~ 582 (592)
+ +.|+. .+...+..-.
T Consensus 499 r--~dP~~~~sl~Gl~~lE 515 (564)
T KOG1174|consen 499 R--QDPKSKRTLRGLRLLE 515 (564)
T ss_pred h--cCccchHHHHHHHHHH
Confidence 5 46666 5555554443
No 64
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.94 E-value=1.3e-06 Score=88.72 Aligned_cols=298 Identities=16% Similarity=0.085 Sum_probs=203.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 007695 261 SKLIDAHAKENCLEDAERILKKMNENGIVPD-IVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPD-KKVYNSMIMAYV 338 (592)
Q Consensus 261 ~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~li~a~~ 338 (592)
-....-|.+.|++++|++.|.+.+.. .|| +..|.....+|...|+|++..+--...++. .|+ +..+.--.+++-
T Consensus 119 K~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 119 KTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHE 194 (606)
T ss_pred HhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHH
Confidence 34455678888999999999988885 677 777888888888999988888777766654 343 234444455555
Q ss_pred HcCCchHHHH----------------------HHHH---------HHHCC--CCCCHHHHHHHHHHHHh---------C-
Q 007695 339 NAGQPKLGMS----------------------LVDM---------MITSG--IERSEEIYLALLRSFAQ---------C- 375 (592)
Q Consensus 339 ~~g~~~~A~~----------------------l~~~---------m~~~g--~~p~~~t~~~Ll~~~~~---------~- 375 (592)
..|++++|+. ++.. +.+.+ +-|+.....+....+-. .
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ 274 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSD 274 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCc
Confidence 5555554432 2211 11111 33444333333332211 0
Q ss_pred ---------------C---CHHHHHHHHHHHHHc---CCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007695 376 ---------------G---DVRGAGQITNIMRIE---EFQPT---------LESCTLLVEAYGQAGDPDQARSNFDYMIR 425 (592)
Q Consensus 376 ---------------g---~~~~A~~~~~~m~~~---g~~~~---------~~~~~~Li~~~~~~g~~~~A~~lf~~m~~ 425 (592)
+ .+..|...+.+-... ....+ ..+...-...+.-.|+.-.|..-|+..+.
T Consensus 275 ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~ 354 (606)
T KOG0547|consen 275 KSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK 354 (606)
T ss_pred cchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh
Confidence 0 122222222211100 01111 22333333445668899999999999998
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHH
Q 007695 426 LGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQ 505 (592)
Q Consensus 426 ~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~ 505 (592)
....++. .|--+...|...++.++-+..|....... +-|+.+|..-.+.+.-.+++++|..=|++.+..... +...|
T Consensus 355 l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~~ 431 (606)
T KOG0547|consen 355 LDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYAY 431 (606)
T ss_pred cCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHHH
Confidence 6554333 27777788999999999999999887753 334566776677777788999999999999987655 77888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 007695 506 VSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQ 566 (592)
Q Consensus 506 ~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~ 566 (592)
..+..+..+.+++.++...|++...+ ++-.+..|+.....+...++++.|.+.|+..++.
T Consensus 432 iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 432 IQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 88888888999999999999999887 6667899999999999999999999999998864
No 65
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.92 E-value=1.2e-05 Score=83.50 Aligned_cols=304 Identities=9% Similarity=-0.096 Sum_probs=172.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007695 258 RDYSKLIDAHAKENCLEDAERILKKMNENGI-VPDIV-TSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335 (592)
Q Consensus 258 ~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~-~pd~~-~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~ 335 (592)
..|..+...+...|+.+.+.+.+....+... .++.. ........+...|++++|..++++..+.. +.|...++. ..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~ 84 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HL 84 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hH
Confidence 3455666666666777776666665544321 12221 12223345566788888888888877652 334444442 22
Q ss_pred HHHH----cCCchHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 007695 336 AYVN----AGQPKLGMSLVDMMITSGIERS-EEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQA 410 (592)
Q Consensus 336 a~~~----~g~~~~A~~l~~~m~~~g~~p~-~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~ 410 (592)
.+.. .+....+.+.+.. .....|+ ......+...+...|++++|...+++..+.. +.+...+..+...|...
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~ 161 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQ 161 (355)
T ss_pred HHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHc
Confidence 2222 3444444444443 1122233 3444556677788888888888888888775 55567778888888888
Q ss_pred CCHHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHHHcCCH
Q 007695 411 GDPDQARSNFDYMIRLGH-KPDD--RCTASMIAAYGKKNLLDKALNLLLELEKDGF-EPGPATY-T--VLVDWLGRLQLI 483 (592)
Q Consensus 411 g~~~~A~~lf~~m~~~g~-~pd~--~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~-~p~~~ty-~--~li~~~~~~g~~ 483 (592)
|++++|...+++...... .|+. ..|..+...+...|++++|..+|++...... .+..... + .++.-+...|..
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~ 241 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHV 241 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCC
Confidence 888888888888776432 2222 2345677778888888888888888754321 1222111 1 223333334433
Q ss_pred HHHHHH---HHHHHhcCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CC-----HHHHHHHHHHHHhCC
Q 007695 484 NEAEQL---LGKISELGE-APPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQ---MG-----PDDFERIINGLLAGG 551 (592)
Q Consensus 484 ~~A~~l---~~~m~~~g~-~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~---~~-----~~~~~~li~a~~~~g 551 (592)
..+.++ ......... ............++...|+.+.|..+++.+...... -. ....-...-++...|
T Consensus 242 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g 321 (355)
T cd05804 242 DVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEG 321 (355)
T ss_pred ChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcC
Confidence 333222 111111100 111222235667778888999999998887653221 00 111122233456889
Q ss_pred CHHHHHHHHHHHHHC
Q 007695 552 FLQDAQRVHGLMEAQ 566 (592)
Q Consensus 552 ~~~~A~~l~~~m~~~ 566 (592)
++++|.+.+......
T Consensus 322 ~~~~A~~~L~~al~~ 336 (355)
T cd05804 322 NYATALELLGPVRDD 336 (355)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999988877654
No 66
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.91 E-value=2.5e-05 Score=79.30 Aligned_cols=352 Identities=13% Similarity=0.089 Sum_probs=230.1
Q ss_pred ccCCchhHHHHHHhhcCCCHh---hHHHHHHHH-HhhCHHHHHHHHHHHhhhCCCCCCH-HHHHHHHHHHHHcCCHHHHH
Q 007695 203 KEEDPSPLLAEWKELLQPSRI---DWINLLDRL-REQNTQLYFKVAELVLSEESFQTNV-RDYSKLIDAHAKENCLEDAE 277 (592)
Q Consensus 203 ~~g~~~~A~~~~~~~~~p~~~---t~~~lL~~~-~~~~~~~~~~~~~~~~~~~~~~p~~-~~y~~Li~~~~~~g~~~~A~ 277 (592)
..+++..|+.+|++++..|.. -|---+..= +......+..+...... .-|-+ ..|-.-+..=-..|++..|.
T Consensus 85 sq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt---~lPRVdqlWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVT---ILPRVDQLWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHH---hcchHHHHHHHHHHHHHHhcccHHHH
Confidence 567888999999998765522 232222221 22333444444444332 22333 23445555556689999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHC-
Q 007695 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS- 356 (592)
Q Consensus 278 ~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~- 356 (592)
++|++-.+ ..|+...|++.|+.=.+.+.++.|..+|+...-. .|++.+|--....=.++|+...|..+|....+.
T Consensus 162 qiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~ 237 (677)
T KOG1915|consen 162 QIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFL 237 (677)
T ss_pred HHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 99999877 5899999999999999999999999999998864 799999999999999999999999999887763
Q ss_pred C-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-------------------------------------------C
Q 007695 357 G-IERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE-------------------------------------------E 392 (592)
Q Consensus 357 g-~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~-------------------------------------------g 392 (592)
| -..+...|++....=.++..++.|.-+|+-.... .
T Consensus 238 ~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~ 317 (677)
T KOG1915|consen 238 GDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK 317 (677)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh
Confidence 1 1112233444333333344444444444333211 0
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH--HHHHH----HH----HHHhcCCHHHHHHHHHHHHHCC
Q 007695 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR--CTASM----IA----AYGKKNLLDKALNLLLELEKDG 462 (592)
Q Consensus 393 ~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~--t~~~l----i~----a~~~~g~~~~A~~l~~~m~~~g 462 (592)
-+-|-.+|--.+..--..|+.+...++|+..... ++|-.. .|..- |+ .=....+++.+.++|+..++.
T Consensus 318 np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l- 395 (677)
T KOG1915|consen 318 NPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL- 395 (677)
T ss_pred CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-
Confidence 1345556666666666778888888888887774 333211 11111 11 113457778888888777762
Q ss_pred CCCCHHHHHHHHHHH----HHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 007695 463 FEPGPATYTVLVDWL----GRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD 538 (592)
Q Consensus 463 ~~p~~~ty~~li~~~----~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 538 (592)
++....||.-+=-.| .++.++..|.+++...+ |.-|-..++...|..=...++++....+++...+-+ +-+-.
T Consensus 396 IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~ 472 (677)
T KOG1915|consen 396 IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCY 472 (677)
T ss_pred cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhH
Confidence 233345555433333 45677888888887766 445667778888888888888888888888887753 22455
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 007695 539 DFERIINGLLAGGFLQDAQRVHGLMEAQ 566 (592)
Q Consensus 539 ~~~~li~a~~~~g~~~~A~~l~~~m~~~ 566 (592)
+|......=-..|+.+.|..+|.-.++.
T Consensus 473 ~W~kyaElE~~LgdtdRaRaifelAi~q 500 (677)
T KOG1915|consen 473 AWSKYAELETSLGDTDRARAIFELAISQ 500 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhcC
Confidence 6777776667788888888888877765
No 67
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.91 E-value=8.4e-07 Score=94.03 Aligned_cols=236 Identities=15% Similarity=0.087 Sum_probs=151.6
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHC-----C-CCCCHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHc-----C-CCC
Q 007695 329 VYNSMIMAYVNAGQPKLGMSLVDMMITS-----G-IERSEEI-YLALLRSFAQCGDVRGAGQITNIMRIE-----E-FQP 395 (592)
Q Consensus 329 t~~~li~a~~~~g~~~~A~~l~~~m~~~-----g-~~p~~~t-~~~Ll~~~~~~g~~~~A~~~~~~m~~~-----g-~~~ 395 (592)
+...+...|...|+++.|+.+++..++. | ..|...+ .+.+...|...+++++|..+|+++... | ..|
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3333455555555555555555444332 1 1122222 223556677777777777777776542 2 111
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCC-CCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCC
Q 007695 396 -TLESCTLLVEAYGQAGDPDQARSNFDYMIR-----LGHK-PDD-RCTASMIAAYGKKNLLDKALNLLLELEKD---GFE 464 (592)
Q Consensus 396 -~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~-----~g~~-pd~-~t~~~li~a~~~~g~~~~A~~l~~~m~~~---g~~ 464 (592)
-..+++.|..+|.+.|++++|...++.... .|.. |.. ..++.+...|+..+.+++|..+++...+. -+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 135566667778888887777776665433 1222 222 23566777888889999999888875442 122
Q ss_pred CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---
Q 007695 465 PG----PATYTVLVDWLGRLQLINEAEQLLGKISEL----GEA--P-PFKIQVSLCDMYARAGIEKKALQALGFLEA--- 530 (592)
Q Consensus 465 p~----~~ty~~li~~~~~~g~~~~A~~l~~~m~~~----g~~--p-~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~--- 530 (592)
++ ..+++.|...|.+.|++++|..++++++.. +.. + ....++.|...|...+++.+|.++|.+...
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 22 468899999999999999999999987632 121 1 235677888899999999999999876433
Q ss_pred -cCC-CCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 007695 531 -KKE-QMG-PDDFERIINGLLAGGFLQDAQRVHGLME 564 (592)
Q Consensus 531 -~~~-~~~-~~~~~~li~a~~~~g~~~~A~~l~~~m~ 564 (592)
.|. .|+ ..+|..|...|...|+++.|.++.+...
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 221 222 3468889999999999999999987765
No 68
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.89 E-value=1.4e-06 Score=88.06 Aligned_cols=118 Identities=9% Similarity=-0.021 Sum_probs=58.6
Q ss_pred CCHHHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 007695 306 GNLDRAKEAFESLRSHG-FQPD--KKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAG 382 (592)
Q Consensus 306 g~~~~A~~~~~~m~~~g-~~pd--~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~ 382 (592)
+..+.++.-+.++.... ..|+ ...|..+...|...|+.++|...|++..+... .+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHH
Confidence 34445555555554321 1111 23344555555555555555555555555432 24455555555555555555555
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007695 383 QITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR 425 (592)
Q Consensus 383 ~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~ 425 (592)
..|+...+.. +-+..+|..+..++...|++++|...|+...+
T Consensus 119 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~ 160 (296)
T PRK11189 119 EAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ 160 (296)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5555555443 22344555555555555555555555555554
No 69
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=5.1e-06 Score=86.06 Aligned_cols=284 Identities=13% Similarity=-0.006 Sum_probs=217.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007695 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333 (592)
Q Consensus 254 ~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l 333 (592)
..++.......+-|...+++.+..++++.+.+. .++....+..=|.++...|+..+-..+=.+|.+.- +....+|-++
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aV 318 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAV 318 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhH
Confidence 445555556666777889999999999998876 35566677777788899998888777777777653 5567899999
Q ss_pred HHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 007695 334 IMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDP 413 (592)
Q Consensus 334 i~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~ 413 (592)
.--|.-.|+..+|.+.|.+....+.. =...|......|+-.+..++|...+...-+.- +-...-+--+.--|.+.++.
T Consensus 319 g~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNL 396 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccH
Confidence 99999999999999999988654322 24578888999999999999999888776542 11222223345567888999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC----CCCHHHHHHHHHHHHHcCCHHHHH
Q 007695 414 DQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKD--GF----EPGPATYTVLVDWLGRLQLINEAE 487 (592)
Q Consensus 414 ~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~--g~----~p~~~ty~~li~~~~~~g~~~~A~ 487 (592)
+.|...|.+.....+ -|...++-+--..-+.+.+.+|..+|+..+.. .+ ..-..+++.|..+|.+.+.+++|.
T Consensus 397 kLAe~Ff~~A~ai~P-~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 397 KLAEKFFKQALAIAP-SDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHHhcCC-CcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 999999998887433 36667777766667788999999999887632 11 123467889999999999999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 007695 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIIN 545 (592)
Q Consensus 488 ~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 545 (592)
..+++......+ +..++.++.-.|...|+++.|...|.+.... .|+-.+...++.
T Consensus 476 ~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~l--~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 476 DYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALAL--KPDNIFISELLK 530 (611)
T ss_pred HHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHhc--CCccHHHHHHHH
Confidence 999999887665 8999999999999999999999999988764 454444444444
No 70
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.87 E-value=1.5e-06 Score=92.21 Aligned_cols=239 Identities=16% Similarity=0.142 Sum_probs=173.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----C-CCCCHH-HHHHHHHHHHHcCCchHHHHHHHHHHHC-----C-
Q 007695 291 DIVTSTVLVHMYSKAGNLDRAKEAFESLRSH-----G-FQPDKK-VYNSMIMAYVNAGQPKLGMSLVDMMITS-----G- 357 (592)
Q Consensus 291 d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~-----g-~~pd~~-t~~~li~a~~~~g~~~~A~~l~~~m~~~-----g- 357 (592)
-..+...|...|...|+++.|..++....+. | ..|.+. ..+.+...|...+++.+|..+|+++... |
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 3456666889999999999999999887653 2 123333 3344677888899999999999888652 2
Q ss_pred -CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----CC-CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHc---
Q 007695 358 -IERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE-----EF-QPTL-ESCTLLVEAYGQAGDPDQARSNFDYMIRL--- 426 (592)
Q Consensus 358 -~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~-----g~-~~~~-~~~~~Li~~~~~~g~~~~A~~lf~~m~~~--- 426 (592)
.+.-..+++.|..+|.+.|++++|...++...+. +. .+.+ ..++.++..|+..+.+++|..++....+.
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD 357 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 1122456777888899999999888877766432 11 2222 34567778888999999999998866542
Q ss_pred CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-
Q 007695 427 GHKPDD----RCTASMIAAYGKKNLLDKALNLLLELEKD----GF--EP-GPATYTVLVDWLGRLQLINEAEQLLGKIS- 494 (592)
Q Consensus 427 g~~pd~----~t~~~li~a~~~~g~~~~A~~l~~~m~~~----g~--~p-~~~ty~~li~~~~~~g~~~~A~~l~~~m~- 494 (592)
-+.++. .+++.+-..|.+.|++++|..+|+..+.. +- .+ ....++.+...|.+.+++.+|.++|.+..
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 222332 47888999999999999999999987543 11 22 24667888889999999999999888754
Q ss_pred ---hcCCC-CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007695 495 ---ELGEA-PP-FKIQVSLCDMYARAGIEKKALQALGFLE 529 (592)
Q Consensus 495 ---~~g~~-p~-~~~~~~Li~~~~~~g~~~~A~~~~~~m~ 529 (592)
..|.. |+ ..+|..|...|.+.|+++.|.++.+.+.
T Consensus 438 i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 438 IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 23332 23 4688999999999999999999987665
No 71
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=1.6e-05 Score=79.40 Aligned_cols=287 Identities=13% Similarity=0.042 Sum_probs=209.8
Q ss_pred hCHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHHcCCHHHHHH
Q 007695 235 QNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVT-STVLVHMYSKAGNLDRAKE 313 (592)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~-~~~Li~~~~~~g~~~~A~~ 313 (592)
++...+...+........++.|+.....+...+...|+.++|...|++.... .|+..+ .....-.+.+.|+++....
T Consensus 210 ~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~ 287 (564)
T KOG1174|consen 210 FKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSA 287 (564)
T ss_pred cccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHH
Confidence 3333344444444455667889999999999999999999999999998764 344332 2222233457788888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 007695 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF 393 (592)
Q Consensus 314 ~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~ 393 (592)
+...+.... ..+...|-.-.......+++..|+.+.++.++.+.. +...|..-.+.+...++.++|.-.|+......
T Consensus 288 L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La- 364 (564)
T KOG1174|consen 288 LMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA- 364 (564)
T ss_pred HHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc-
Confidence 877776432 234455555556666788999999999998875422 55566666678889999999999999988764
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHhc-CCHHHHHHHHHHHHHCCCCCC-HHHH
Q 007695 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI-AAYGKK-NLLDKALNLLLELEKDGFEPG-PATY 470 (592)
Q Consensus 394 ~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li-~a~~~~-g~~~~A~~l~~~m~~~g~~p~-~~ty 470 (592)
+-+..+|.-|+.+|...|...+|...-+..... ..-+..+.+.+- ..|.-. .--++|..+++.-.+ +.|+ ....
T Consensus 365 p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV 441 (564)
T KOG1174|consen 365 PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAV 441 (564)
T ss_pred hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHH
Confidence 567899999999999999999998777665542 122445555431 222222 234788888877554 4565 3566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 007695 471 TVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAK 531 (592)
Q Consensus 471 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~ 531 (592)
+.+...|...|...++..++++... ..||....+.|.+.+...+.+.+|+..|......
T Consensus 442 ~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 442 NLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 7777889999999999999998876 4579999999999999999999999998877664
No 72
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.85 E-value=8.1e-05 Score=78.36 Aligned_cols=272 Identities=14% Similarity=0.149 Sum_probs=171.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCc----------------------hHHHHHHH
Q 007695 294 TSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQP----------------------KLGMSLVD 351 (592)
Q Consensus 294 ~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~----------------------~~A~~l~~ 351 (592)
.|++|.+.|.+.|.+++|..+|++.... ..++.-|+.+.++|++...- +-....|+
T Consensus 250 Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e 327 (835)
T KOG2047|consen 250 LWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFE 327 (835)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHH
Confidence 4788889999999999999999887754 34555566666666543221 12223333
Q ss_pred HHHHCCC-----------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHHcCCHH
Q 007695 352 MMITSGI-----------ERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP------TLESCTLLVEAYGQAGDPD 414 (592)
Q Consensus 352 ~m~~~g~-----------~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~------~~~~~~~Li~~~~~~g~~~ 414 (592)
.+.+... +.+..+|..-+. +..|+..+....|.+..+.- .| -...|..+.+.|-..|+++
T Consensus 328 ~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~v-dP~ka~Gs~~~Lw~~faklYe~~~~l~ 404 (835)
T KOG2047|consen 328 SLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTV-DPKKAVGSPGTLWVEFAKLYENNGDLD 404 (835)
T ss_pred HHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHcc-CcccCCCChhhHHHHHHHHHHhcCcHH
Confidence 3322210 011122222222 22355666666777766541 22 2467888999999999999
Q ss_pred HHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----------CCCC-------CHHHHHHHH
Q 007695 415 QARSNFDYMIRLGHKPD---DRCTASMIAAYGKKNLLDKALNLLLELEKD----------GFEP-------GPATYTVLV 474 (592)
Q Consensus 415 ~A~~lf~~m~~~g~~pd---~~t~~~li~a~~~~g~~~~A~~l~~~m~~~----------g~~p-------~~~ty~~li 474 (592)
.|..+|++..+...+-- ..+|..-...=.+..+++.|+++.+..... |..| +...|...+
T Consensus 405 ~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~ 484 (835)
T KOG2047|consen 405 DARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYA 484 (835)
T ss_pred HHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHH
Confidence 99999999887433211 123333333344567788888888765421 1111 123456666
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHh---C
Q 007695 475 DWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGP-DDFERIINGLLA---G 550 (592)
Q Consensus 475 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~li~a~~~---~ 550 (592)
+.....|-++....+|+++.+..+. ++.+.......+..+.-++++.+++++-...-..|+. +.|+..+.-+.+ .
T Consensus 485 DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg 563 (835)
T KOG2047|consen 485 DLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGG 563 (835)
T ss_pred HHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcC
Confidence 7777788999999999999988776 5555555555566777788898888876655334443 467777665543 3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCH
Q 007695 551 GFLQDAQRVHGLMEAQGFAASE 572 (592)
Q Consensus 551 g~~~~A~~l~~~m~~~g~~pd~ 572 (592)
-..+.|..+|++.++ |++|..
T Consensus 564 ~klEraRdLFEqaL~-~Cpp~~ 584 (835)
T KOG2047|consen 564 TKLERARDLFEQALD-GCPPEH 584 (835)
T ss_pred CCHHHHHHHHHHHHh-cCCHHH
Confidence 467899999999988 888877
No 73
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.83 E-value=3.7e-06 Score=78.01 Aligned_cols=205 Identities=17% Similarity=0.098 Sum_probs=162.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 007695 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVN 339 (592)
Q Consensus 260 y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~ 339 (592)
...|.-.|.+.|++..|.+-+++..++... +..+|..+...|.+.|+.+.|.+.|++..+.. +.+-.+.|.....+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 556677889999999999999999887433 56688888899999999999999999988764 5567788889999999
Q ss_pred cCCchHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007695 340 AGQPKLGMSLVDMMITSG-IERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARS 418 (592)
Q Consensus 340 ~g~~~~A~~l~~~m~~~g-~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~ 418 (592)
.|++++|...|++..... ..--..||..+.-+..+.|+.+.|...|++..... +-...+.-.+.....+.|++-.|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHH
Confidence 999999999999888754 22245678888888888999999999999888775 3345667778888888899999998
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 007695 419 NFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATY 470 (592)
Q Consensus 419 lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty 470 (592)
.++.....+. ++..+.-..|..-...|+.+.+-++=..+.+. -|...-|
T Consensus 195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~ 243 (250)
T COG3063 195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEY 243 (250)
T ss_pred HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHH
Confidence 8888887665 77777777788878888888887777666553 3444433
No 74
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.82 E-value=9.1e-06 Score=87.17 Aligned_cols=269 Identities=13% Similarity=0.095 Sum_probs=182.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhCCCCCCHH
Q 007695 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKA-----GNLDRAKEAFESLRSHGFQPDKK 328 (592)
Q Consensus 254 ~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~-----g~~~~A~~~~~~m~~~g~~pd~~ 328 (592)
......+......+.+.|+.++|..+|..+.+++.. |..-|..+..+..-. .+.+....+|+++... -|...
T Consensus 35 ~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~--yp~s~ 111 (517)
T PF12569_consen 35 LDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEK--YPRSD 111 (517)
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHh--Ccccc
Confidence 334445667778889999999999999999987532 444455555555222 2567778888888765 34433
Q ss_pred HHHHHHHHHHHcCCc-hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc----C----------C
Q 007695 329 VYNSMIMAYVNAGQP-KLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE----E----------F 393 (592)
Q Consensus 329 t~~~li~a~~~~g~~-~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~----g----------~ 393 (592)
+...+.-.+.....+ ..+..++..+...|++ .+|+.|-..|.......-..+++...... + -
T Consensus 112 ~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~ 188 (517)
T PF12569_consen 112 APRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKE 188 (517)
T ss_pred chhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccC
Confidence 333333222222222 2455667777788866 46777777776555555555555555432 1 1
Q ss_pred CCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 007695 394 QPTLE--SCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYT 471 (592)
Q Consensus 394 ~~~~~--~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~ 471 (592)
+|+.. ++.-+...|...|++++|+.+.++.+.+.+. ....|..-...|-+.|++.+|...++...... .-|...-+
T Consensus 189 ~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNs 266 (517)
T PF12569_consen 189 PPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINS 266 (517)
T ss_pred CchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHH
Confidence 34443 4456677788999999999999998886432 36677778888999999999999999887654 23556666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHH--------HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007695 472 VLVDWLGRLQLINEAEQLLGKISELGEAPPFKI--------QVSLCDMYARAGIEKKALQALGFLEA 530 (592)
Q Consensus 472 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~--------~~~Li~~~~~~g~~~~A~~~~~~m~~ 530 (592)
-.+..+.++|++++|.+++....+.+..|.... ......+|.+.|++..|++-|..+.+
T Consensus 267 K~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 267 KCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 777888899999999999998887665433222 24456788999999999888766544
No 75
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.82 E-value=5.2e-06 Score=83.86 Aligned_cols=218 Identities=14% Similarity=0.040 Sum_probs=137.0
Q ss_pred CCHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHH
Q 007695 271 NCLEDAERILKKMNENG-IVPD--IVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGM 347 (592)
Q Consensus 271 g~~~~A~~l~~~m~~~g-~~pd--~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~ 347 (592)
+..+.++.-+.++.... ..|+ ...|..+...|...|++++|...|++..+.. +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 34566666666666432 1222 3457777778888888888888888887764 446778888888888888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 007695 348 SLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427 (592)
Q Consensus 348 ~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g 427 (592)
..|++..+.... +..++..+..++...|++++|.+.|+...+.. |+..........+...++.++|...|.+.....
T Consensus 119 ~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 119 EAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 888888875422 46677778888888888888888888887764 332222222223445677888888886654321
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 007695 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKD---GF--EP-GPATYTVLVDWLGRLQLINEAEQLLGKISELG 497 (592)
Q Consensus 428 ~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~---g~--~p-~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g 497 (592)
.|+...+ .+ .+...|+...+ ..+..+.+. .. .| ....|..+...+.+.|++++|...|++....+
T Consensus 196 -~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 196 -DKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred -CccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2332222 22 22334554443 244444322 11 11 22456667777777777777777777776654
No 76
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.76 E-value=7.3e-06 Score=76.07 Aligned_cols=190 Identities=11% Similarity=0.009 Sum_probs=82.6
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 007695 332 SMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAG 411 (592)
Q Consensus 332 ~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g 411 (592)
.|.-+|.+.|+...|..-+++.++.+.. +..++..+...|.+.|+.+.|.+.|+...... +-+-.+.|.....+|..|
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCC
Confidence 3444444455555555555544444311 34444444444455555555555554444433 233344444444444445
Q ss_pred CHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 007695 412 DPDQARSNFDYMIRL-GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490 (592)
Q Consensus 412 ~~~~A~~lf~~m~~~-g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~ 490 (592)
.+++|...|++.... ...-...+|..+.-+..+.|+.+.|...|++-.+.. +-...+...+.+...+.|++-.|..++
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLYL 196 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHHH
Confidence 555555544444442 011112334444444444444444444444444321 111233334444444444444444444
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 007695 491 GKISELGEAPPFKIQVSLCDMYARAGIEKKALQAL 525 (592)
Q Consensus 491 ~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~ 525 (592)
+.....+. ++..+.-..|..-.+.|+.+.+.+.=
T Consensus 197 ~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~ 230 (250)
T COG3063 197 ERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQ 230 (250)
T ss_pred HHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHH
Confidence 44443333 34444444444444444444444443
No 77
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.74 E-value=7.2e-05 Score=77.62 Aligned_cols=262 Identities=13% Similarity=0.002 Sum_probs=161.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 007695 264 IDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSK----AGNLDRAKEAFESLRSHGFQPD-KKVYNSMIMAYV 338 (592)
Q Consensus 264 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~----~g~~~~A~~~~~~m~~~g~~pd-~~t~~~li~a~~ 338 (592)
...+...|++++|.+++++..+.. +.|...+.. ...+.. .+....+.+.+... ....|+ ...+..+...+.
T Consensus 50 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~ 125 (355)
T cd05804 50 ALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLE 125 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHH
Confidence 345567889999999999887763 224444442 222222 34555555555541 112333 344456667888
Q ss_pred HcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCC--HHHHHHHHHHHHHcCCHHH
Q 007695 339 NAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF-QPT--LESCTLLVEAYGQAGDPDQ 415 (592)
Q Consensus 339 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~-~~~--~~~~~~Li~~~~~~g~~~~ 415 (592)
..|++++|...+++..+.. +.+...+..+...|...|++++|...+.......- .++ ...|..+...+...|++++
T Consensus 126 ~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~ 204 (355)
T cd05804 126 EAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEA 204 (355)
T ss_pred HcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHH
Confidence 8999999999999998864 33567788888899999999999999988876531 123 2345678888999999999
Q ss_pred HHHHHHHHHHcCC-CCCHHHH-H--HHHHHHHhcCCHHHHHHH--HHHHHHCCC--CCCHHHHHHHHHHHHHcCCHHHHH
Q 007695 416 ARSNFDYMIRLGH-KPDDRCT-A--SMIAAYGKKNLLDKALNL--LLELEKDGF--EPGPATYTVLVDWLGRLQLINEAE 487 (592)
Q Consensus 416 A~~lf~~m~~~g~-~pd~~t~-~--~li~a~~~~g~~~~A~~l--~~~m~~~g~--~p~~~ty~~li~~~~~~g~~~~A~ 487 (592)
|..+|++...... .+..... + .++.-+...|....+.++ +........ ......-.....++...|+.+.|.
T Consensus 205 A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~ 284 (355)
T cd05804 205 ALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALD 284 (355)
T ss_pred HHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHH
Confidence 9999998864322 1112111 1 233334444543333332 211111111 111222235667778889999999
Q ss_pred HHHHHHHhcCCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007695 488 QLLGKISELGEA--------PPFKIQVSLCDMYARAGIEKKALQALGFLEA 530 (592)
Q Consensus 488 ~l~~~m~~~g~~--------p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~ 530 (592)
.++..+...... ..........-++...|+.+.|.+.+.....
T Consensus 285 ~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 285 KLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred HHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999988653221 0122333344456789999999999887654
No 78
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.66 E-value=0.00034 Score=73.82 Aligned_cols=220 Identities=11% Similarity=0.093 Sum_probs=129.6
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHH
Q 007695 330 YNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL-ESCTLLVEAYG 408 (592)
Q Consensus 330 ~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~Li~~~~ 408 (592)
|...++.--..|-++....+|+.+++..+. ++.......-.+-...-++++.++|+.-...--.|++ ..|+..+.-+.
T Consensus 480 Ws~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi 558 (835)
T KOG2047|consen 480 WSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFI 558 (835)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHH
Confidence 333333333445555555555555554432 2222222222233344456666666554443334443 45666655554
Q ss_pred H---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcC
Q 007695 409 Q---AGDPDQARSNFDYMIRLGHKPDDRCTASMIAAY--GKKNLLDKALNLLLELEKDGFEPG--PATYTVLVDWLGRLQ 481 (592)
Q Consensus 409 ~---~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~--~~~g~~~~A~~l~~~m~~~g~~p~--~~ty~~li~~~~~~g 481 (592)
+ ...++.|..+|++..+ |++|...-+--++-+- -+.|....|+.+|++... ++++. ...|++.|.-....=
T Consensus 559 ~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~-~v~~a~~l~myni~I~kaae~y 636 (835)
T KOG2047|consen 559 KRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS-AVKEAQRLDMYNIYIKKAAEIY 636 (835)
T ss_pred HHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHh
Confidence 4 3468999999999988 6655443322222211 234888889999988643 44444 367888887666666
Q ss_pred CHHHHHHHHHHHHhcCCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCCCHH
Q 007695 482 LINEAEQLLGKISELGEAPPFK---IQVSLCDMYARAGIEKKALQALGFLEAK-KEQMGPDDFERIINGLLAGGFLQ 554 (592)
Q Consensus 482 ~~~~A~~l~~~m~~~g~~p~~~---~~~~Li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~a~~~~g~~~ 554 (592)
-+.....+|++.++. -|+.. ...-..+.=.+.|.++.|..++..-.+. +...+...|.+-=.-=.++|+-+
T Consensus 637 Gv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGned 711 (835)
T KOG2047|consen 637 GVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNED 711 (835)
T ss_pred CCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHH
Confidence 666777888888775 23433 3334455667899999999999876653 23445666877777778899843
No 79
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.59 E-value=0.00046 Score=67.90 Aligned_cols=255 Identities=16% Similarity=0.069 Sum_probs=114.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 007695 261 SKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTV-LVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVN 339 (592)
Q Consensus 261 ~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~-Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~ 339 (592)
-+|.+....+-.+.+|.++|.+....+ |+-...|. +.-+|.+..-++-+.+++.-.++. ++.++...|.......+
T Consensus 155 LSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fR 231 (557)
T KOG3785|consen 155 LSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFR 231 (557)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhh
Confidence 344444444556788888888877652 44444443 334566667777777777766654 23344555555444433
Q ss_pred cCCchHHHHHHHHHHHCCC--------------------------CC-----CHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 007695 340 AGQPKLGMSLVDMMITSGI--------------------------ER-----SEEIYLALLRSFAQCGDVRGAGQITNIM 388 (592)
Q Consensus 340 ~g~~~~A~~l~~~m~~~g~--------------------------~p-----~~~t~~~Ll~~~~~~g~~~~A~~~~~~m 388 (592)
.=+-.-|..-.+.+.+.+- -| -+..-..|+--|.+.+++.+|..+.+++
T Consensus 232 l~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl 311 (557)
T KOG3785|consen 232 LINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDL 311 (557)
T ss_pred hhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhc
Confidence 2111112221222211110 00 0112223444567788888888777665
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007695 389 RIEEFQPTLESCTLLVEAYGQAG-------DPDQARSNFDYMIRLGHKPDDRC-TASMIAAYGKKNLLDKALNLLLELEK 460 (592)
Q Consensus 389 ~~~g~~~~~~~~~~Li~~~~~~g-------~~~~A~~lf~~m~~~g~~pd~~t-~~~li~a~~~~g~~~~A~~l~~~m~~ 460 (592)
. +.+..-|-.-.-.++..| ++.-|...|+-.-.++..-|++. -.++.+++.-..++++.+.++..+..
T Consensus 312 ~----PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~s 387 (557)
T KOG3785|consen 312 D----PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIES 387 (557)
T ss_pred C----CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 223332222222222222 34555555554444433222211 12233333333444444444444433
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHHHHcCCHHHHHHH
Q 007695 461 DGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQ-VSLCDMYARAGIEKKALQA 524 (592)
Q Consensus 461 ~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~-~~Li~~~~~~g~~~~A~~~ 524 (592)
-= .-|......+.++++..|.+.+|+++|-.+....++ |..+| ..|..+|.+++..+.|..+
T Consensus 388 YF-~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~ 450 (557)
T KOG3785|consen 388 YF-TNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDM 450 (557)
T ss_pred Hh-cCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHH
Confidence 21 112222223444555555555555555444433333 22232 2334445555555555443
No 80
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.57 E-value=0.00047 Score=81.02 Aligned_cols=307 Identities=11% Similarity=-0.051 Sum_probs=199.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCC------CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----H
Q 007695 261 SKLIDAHAKENCLEDAERILKKMNENGI------VPD--IVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDK----K 328 (592)
Q Consensus 261 ~~Li~~~~~~g~~~~A~~l~~~m~~~g~------~pd--~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~----~ 328 (592)
......+...|++++|..++......-- .+. ......+...+...|++++|...++.....--..+. .
T Consensus 413 ~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 492 (903)
T PRK04841 413 LLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIV 492 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHH
Confidence 3445556778999999999988754310 111 112223345566889999999999987753111121 3
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCC--C-C
Q 007695 329 VYNSMIMAYVNAGQPKLGMSLVDMMITS----GI-ERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE----EFQ--P-T 396 (592)
Q Consensus 329 t~~~li~a~~~~g~~~~A~~l~~~m~~~----g~-~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~----g~~--~-~ 396 (592)
+.+.+...+...|++++|...+.+.... |. .....++..+...+...|+++.|...+.+.... +.. + .
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 572 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH 572 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence 4556667778899999999999887652 11 111234566677888999999999988876542 211 1 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHH--
Q 007695 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRL--GHKPD--DRCTASMIAAYGKKNLLDKALNLLLELEKD--GFEPGPA-- 468 (592)
Q Consensus 397 ~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~--g~~pd--~~t~~~li~a~~~~g~~~~A~~l~~~m~~~--g~~p~~~-- 468 (592)
...+..+...+...|++++|...+.+.... ...+. ..++..+...+...|+.+.|...+...... .......
T Consensus 573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~ 652 (903)
T PRK04841 573 EFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWI 652 (903)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHh
Confidence 334556667788889999999999887552 11122 334444566778899999999998887542 1111111
Q ss_pred H--HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC-HH
Q 007695 469 T--YTVLVDWLGRLQLINEAEQLLGKISELGEAPP---FKIQVSLCDMYARAGIEKKALQALGFLEAK----KEQMG-PD 538 (592)
Q Consensus 469 t--y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~----~~~~~-~~ 538 (592)
. ....+..+...|+.+.|..++........... ...+..+..++...|+.++|...+++.... +.... ..
T Consensus 653 ~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~ 732 (903)
T PRK04841 653 ANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNR 732 (903)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence 1 11122445568899999999877654221111 112456777888999999999999877652 22221 23
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 007695 539 DFERIINGLLAGGFLQDAQRVHGLMEAQG 567 (592)
Q Consensus 539 ~~~~li~a~~~~g~~~~A~~l~~~m~~~g 567 (592)
+...+..++...|+.++|...+.+..+..
T Consensus 733 ~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 733 NLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 45566788889999999999999887653
No 81
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.57 E-value=0.0012 Score=71.39 Aligned_cols=373 Identities=13% Similarity=0.062 Sum_probs=232.6
Q ss_pred chHHHHHHHHccc-ccCCchhHHHHHHhhc---CCCHhhHHHHHHHH-HhhCHHHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 007695 190 KCKLITDKILSLE-KEEDPSPLLAEWKELL---QPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLI 264 (592)
Q Consensus 190 ~~~~~~~~l~~~~-~~g~~~~A~~~~~~~~---~p~~~t~~~lL~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li 264 (592)
+...++..+.-.. ++|++..+-+.|++.. -.....|+.+-..+ +.+....++.+.+..+....-++++..+-..-
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 3444555444333 8888888888888752 23445566666555 44445556666665544333234444454444
Q ss_pred HHHHH-cCCHHHHHHHHHHHHHC--CC--CCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHhCCCCCCHH
Q 007695 265 DAHAK-ENCLEDAERILKKMNEN--GI--VPDIVTSTVLVHMYSKA-----------GNLDRAKEAFESLRSHGFQPDKK 328 (592)
Q Consensus 265 ~~~~~-~g~~~~A~~l~~~m~~~--g~--~pd~~~~~~Li~~~~~~-----------g~~~~A~~~~~~m~~~g~~pd~~ 328 (592)
..|.+ .+.+++++.+-.+.... +. ......|..+.-+|... ....++.+.+++..+.+ +-|..
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~dp~ 479 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PTDPL 479 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CCCch
Confidence 55554 46667766666665541 11 11334455555555432 12356778888887654 33444
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CC--------------
Q 007695 329 VYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE-EF-------------- 393 (592)
Q Consensus 329 t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~-g~-------------- 393 (592)
+...+.--|+..++.+.|.+..++..+.+-.-+...|..|.-.+...+++.+|+.+.+..... |.
T Consensus 480 ~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~ 559 (799)
T KOG4162|consen 480 VIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELT 559 (799)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhh
Confidence 444445556678899999999999998765668889999999999999999999988876543 21
Q ss_pred ----CCCHHHHHHHHHHHHH---------cC--------------CHHHHHHHHHHH--------HHcC-----------
Q 007695 394 ----QPTLESCTLLVEAYGQ---------AG--------------DPDQARSNFDYM--------IRLG----------- 427 (592)
Q Consensus 394 ----~~~~~~~~~Li~~~~~---------~g--------------~~~~A~~lf~~m--------~~~g----------- 427 (592)
..-..|+..++..+-. .| +..+|......+ ...|
T Consensus 560 ~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~ 639 (799)
T KOG4162|consen 560 FNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVL 639 (799)
T ss_pred cccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCccccc
Confidence 0001222222222210 00 111111111000 0001
Q ss_pred CCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 007695 428 HKPDD------RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPP 501 (592)
Q Consensus 428 ~~pd~------~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 501 (592)
..|+. ..|......+.+.+..++|...+.+..+. .......|......+...|...+|.+.|......++. +
T Consensus 640 ~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~-h 717 (799)
T KOG4162|consen 640 PGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD-H 717 (799)
T ss_pred CCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC-C
Confidence 01111 12344555667777778887666665442 2334456666667778889999999999988876555 6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHH--HHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 007695 502 FKIQVSLCDMYARAGIEKKALQ--ALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQ 566 (592)
Q Consensus 502 ~~~~~~Li~~~~~~g~~~~A~~--~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~ 566 (592)
+...+++..++...|+..-|.. ++..+.+. .+.++..|..+...+-+.|+.+.|.+.|....+.
T Consensus 718 v~s~~Ala~~lle~G~~~la~~~~~L~dalr~-dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 718 VPSMTALAELLLELGSPRLAEKRSLLSDALRL-DPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred cHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 7788999999999998888887 88888887 4568999999999999999999999999987654
No 82
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.56 E-value=1.6e-06 Score=86.64 Aligned_cols=247 Identities=15% Similarity=0.129 Sum_probs=127.4
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHH
Q 007695 269 KENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMS 348 (592)
Q Consensus 269 ~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~ 348 (592)
=.|++..++.-.+ ........+......+.++|...|+++.++ .++.... .|.......+...+...++-+.++.
T Consensus 13 y~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~ 87 (290)
T PF04733_consen 13 YLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALE 87 (290)
T ss_dssp CTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHH
T ss_pred HhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHH
Confidence 3466666654444 222111112334445666667777655433 3333332 5555555444444332233333333
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 007695 349 LVDMMITSGIER-SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427 (592)
Q Consensus 349 l~~~m~~~g~~p-~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g 427 (592)
-+++.......+ +..........+...|++++|+++++.. .+.......+..|.+.++++.|.+.++.|.+.
T Consensus 88 ~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~- 160 (290)
T PF04733_consen 88 ELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI- 160 (290)
T ss_dssp HHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc-
Confidence 333332222221 2222223334455567777777766542 35566666777777777777777777777653
Q ss_pred CCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHH
Q 007695 428 HKPDDRCTASMIAAYGK----KNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFK 503 (592)
Q Consensus 428 ~~pd~~t~~~li~a~~~----~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 503 (592)
..| .+...+..++.. ...+.+|..+|+++.+. ..+++.+.+.+..+....|++++|..++.+....+.. +..
T Consensus 161 -~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d 236 (290)
T PF04733_consen 161 -DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPD 236 (290)
T ss_dssp -SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHH
T ss_pred -CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHH
Confidence 223 333334444332 23567777777776443 4566677777777777777777777777776655443 556
Q ss_pred HHHHHHHHHHHcCCH-HHHHHHHHHHHHc
Q 007695 504 IQVSLCDMYARAGIE-KKALQALGFLEAK 531 (592)
Q Consensus 504 ~~~~Li~~~~~~g~~-~~A~~~~~~m~~~ 531 (592)
+...++.+....|+. +.+.+.+.++...
T Consensus 237 ~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 237 TLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 666666666666666 5566666666553
No 83
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.56 E-value=0.00081 Score=66.00 Aligned_cols=342 Identities=12% Similarity=0.090 Sum_probs=212.1
Q ss_pred cccCCchhHHHHHHhhcCCCHhhHHHHHHHH----HhhCHHHHHHHHHHHhhhCCCCCCHHHHH-HHHHHHHHcCCHHHH
Q 007695 202 EKEEDPSPLLAEWKELLQPSRIDWINLLDRL----REQNTQLYFKVAELVLSEESFQTNVRDYS-KLIDAHAKENCLEDA 276 (592)
Q Consensus 202 ~~~g~~~~A~~~~~~~~~p~~~t~~~lL~~~----~~~~~~~~~~~~~~~~~~~~~~p~~~~y~-~Li~~~~~~g~~~~A 276 (592)
.-.|++.+|+..|..+++-|+..|.++.... +-+...-++.-+..++. .+||...-. .-...+.+.|.++.|
T Consensus 49 la~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle---lKpDF~~ARiQRg~vllK~Gele~A 125 (504)
T KOG0624|consen 49 LARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE---LKPDFMAARIQRGVVLLKQGELEQA 125 (504)
T ss_pred HHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh---cCccHHHHHHHhchhhhhcccHHHH
Confidence 3678889999999988888888888777642 33443334444444443 467654321 123467889999999
Q ss_pred HHHHHHHHHCCCCCC----HHH----------HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 007695 277 ERILKKMNENGIVPD----IVT----------STVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQ 342 (592)
Q Consensus 277 ~~l~~~m~~~g~~pd----~~~----------~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~ 342 (592)
..=|+.+.++...-+ ... ....+..+...|+...|......+++.. +.|...|..-..+|...|.
T Consensus 126 ~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e 204 (504)
T KOG0624|consen 126 EADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGE 204 (504)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCc
Confidence 999999988743211 111 1233445566788899999988888764 6688888888899999999
Q ss_pred chHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHH-------------HHHHHH
Q 007695 343 PKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLL-------------VEAYGQ 409 (592)
Q Consensus 343 ~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L-------------i~~~~~ 409 (592)
+..|+.=++..-+.. .-+..++--+-..+...|+.+.++...++..+. .||...+... +.....
T Consensus 205 ~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie 281 (504)
T KOG0624|consen 205 PKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIE 281 (504)
T ss_pred HHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 998887777765543 336677777788888889988888888877765 4554332111 122334
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHH
Q 007695 410 AGDPDQARSNFDYMIRLGHKPDDRCTA---SMIAAYGKKNLLDKALNLLLELEKDGFEPG-PATYTVLVDWLGRLQLINE 485 (592)
Q Consensus 410 ~g~~~~A~~lf~~m~~~g~~pd~~t~~---~li~a~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~ 485 (592)
.++|-++.+-.+...+..+....+.|+ .+-.+|...+++.+|++.-.+.+. +.|+ +.++.--..+|.-...++.
T Consensus 282 ~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~ 359 (504)
T KOG0624|consen 282 EKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDD 359 (504)
T ss_pred hhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHH
Confidence 556666666666666543332233333 334455566777777777766655 3344 6666666667777777777
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 007695 486 AEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEA 565 (592)
Q Consensus 486 A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~ 565 (592)
|..-|+...+.+.. |... +.| .+.|.++.++...+ | |.. |-+--+.-.-.+..+.|++|-.
T Consensus 360 AI~dye~A~e~n~s-n~~~---------reG-le~Akrlkkqs~kR----D---YYK-ILGVkRnAsKqEI~KAYRKlAq 420 (504)
T KOG0624|consen 360 AIHDYEKALELNES-NTRA---------REG-LERAKRLKKQSGKR----D---YYK-ILGVKRNASKQEITKAYRKLAQ 420 (504)
T ss_pred HHHHHHHHHhcCcc-cHHH---------HHH-HHHHHHHHHHhccc----h---HHH-HhhhcccccHHHHHHHHHHHHH
Confidence 77777777665432 2111 111 23444443333222 1 222 2334455566777777877765
Q ss_pred CCCCCCH
Q 007695 566 QGFAASE 572 (592)
Q Consensus 566 ~g~~pd~ 572 (592)
. ..||.
T Consensus 421 k-WHPDN 426 (504)
T KOG0624|consen 421 K-WHPDN 426 (504)
T ss_pred h-cCCcc
Confidence 4 66654
No 84
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.55 E-value=0.0014 Score=69.44 Aligned_cols=245 Identities=11% Similarity=0.030 Sum_probs=158.9
Q ss_pred CcchHHHHHHHHcccccCCchhHHHHHHhhcCCCHhhHHH-HHHHH---HhhCHHHHHHHHHHHhhhCCCCCCHHHHHHH
Q 007695 188 TGKCKLITDKILSLEKEEDPSPLLAEWKELLQPSRIDWIN-LLDRL---REQNTQLYFKVAELVLSEESFQTNVRDYSKL 263 (592)
Q Consensus 188 ~~~~~~~~~~l~~~~~~g~~~~A~~~~~~~~~p~~~t~~~-lL~~~---~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~L 263 (592)
+++...+...++..|..+++...++..+.+++....+-.+ .+.|+ +.++.+++...++.-+. +-..+.+.|..+
T Consensus 4 ~~KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr--~d~~S~vCwHv~ 81 (700)
T KOG1156|consen 4 SPKENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLR--NDLKSHVCWHVL 81 (700)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhc--cCcccchhHHHH
Confidence 3444445555666666677777777776664322222111 13333 45666777776665543 224556678888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCc
Q 007695 264 IDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQP 343 (592)
Q Consensus 264 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~ 343 (592)
.-.+-...++++|.+.|......+.. |...|.-|.-.-++.++++.....-..+.+.. +-....|..+..++.-.|+.
T Consensus 82 gl~~R~dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y 159 (700)
T KOG1156|consen 82 GLLQRSDKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEY 159 (700)
T ss_pred HHHHhhhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHH
Confidence 88888889999999999999886533 77788877777788899999888888887652 33455788899999999999
Q ss_pred hHHHHHHHHHHHCC-CCCCHHHHHHHH------HHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 007695 344 KLGMSLVDMMITSG-IERSEEIYLALL------RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA 416 (592)
Q Consensus 344 ~~A~~l~~~m~~~g-~~p~~~t~~~Ll------~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A 416 (592)
..|..++++..+.. -.|+...|.... ......|..+.|.+.+......- .-....-..-...+.+.+++++|
T Consensus 160 ~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i-~Dkla~~e~ka~l~~kl~~lEeA 238 (700)
T KOG1156|consen 160 KMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI-VDKLAFEETKADLLMKLGQLEEA 238 (700)
T ss_pred HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH-HHHHHHhhhHHHHHHHHhhHHhH
Confidence 99999999998764 356666665333 23445666677766665544321 11122223445566777777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHH
Q 007695 417 RSNFDYMIRLGHKPDDRCTASMI 439 (592)
Q Consensus 417 ~~lf~~m~~~g~~pd~~t~~~li 439 (592)
..++..+... .||..-|...+
T Consensus 239 ~~~y~~Ll~r--nPdn~~Yy~~l 259 (700)
T KOG1156|consen 239 VKVYRRLLER--NPDNLDYYEGL 259 (700)
T ss_pred HHHHHHHHhh--CchhHHHHHHH
Confidence 7777777664 35555554433
No 85
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.54 E-value=1.8e-05 Score=75.85 Aligned_cols=192 Identities=15% Similarity=0.139 Sum_probs=99.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHH
Q 007695 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS-MIMAYV 338 (592)
Q Consensus 260 y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~-li~a~~ 338 (592)
+.+++..+.+..++..|.+++..-.++..+ +....+.|..+|-...++..|-..|+++... .|...-|.. -...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 345555556666666666666665554221 5555666666666666666666666666543 344333332 223344
Q ss_pred HcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 007695 339 NAGQPKLGMSLVDMMITSGIERSEEIYLALLRS--FAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA 416 (592)
Q Consensus 339 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~--~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A 416 (592)
+.+.+..|+.+...|.+. ++...-..-+.+ ....+++..+..++++....| +..+.+.......+.|+++.|
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHH
Confidence 556666666666666432 111111111111 233455555555555554322 333334444445566666666
Q ss_pred HHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007695 417 RSNFDYMIR-LGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG 462 (592)
Q Consensus 417 ~~lf~~m~~-~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g 462 (592)
.+-|+...+ .|.. ....||..+ +..+.|+++.|+++..+++++|
T Consensus 164 vqkFqaAlqvsGyq-pllAYniAL-aHy~~~qyasALk~iSEIieRG 208 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQ-PLLAYNLAL-AHYSSRQYASALKHISEIIERG 208 (459)
T ss_pred HHHHHHHHhhcCCC-chhHHHHHH-HHHhhhhHHHHHHHHHHHHHhh
Confidence 666666555 3444 345555443 3334556666666666665554
No 86
>PF12854 PPR_1: PPR repeat
Probab=98.46 E-value=2.5e-07 Score=59.96 Aligned_cols=32 Identities=44% Similarity=0.719 Sum_probs=14.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007695 287 GIVPDIVTSTVLVHMYSKAGNLDRAKEAFESL 318 (592)
Q Consensus 287 g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m 318 (592)
|+.||..|||+||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444444
No 87
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.45 E-value=6.5e-06 Score=82.29 Aligned_cols=255 Identities=15% Similarity=0.030 Sum_probs=169.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHH
Q 007695 300 HMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379 (592)
Q Consensus 300 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~ 379 (592)
+-+.-.|++..++.-.+ .....-..+......+.+++...|+.+.++ .++... -.|.......+...+....+-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~-~~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKS-SSPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TT-SSCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccC-CChhHHHHHHHHHHHhCccchH
Confidence 34445688888886665 332211223445667888999999877554 333333 3666666666655554434555
Q ss_pred HHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007695 380 GAGQITNIMRIEEFQP-TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLEL 458 (592)
Q Consensus 380 ~A~~~~~~m~~~g~~~-~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m 458 (592)
.+..-+.+........ +..........+...|++++|++++..- .+.......+..|.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555554443333232 3333333445677789999999988653 36777888899999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 007695 459 EKDGFEPGPATYTVLVDWLGR----LQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQ 534 (592)
Q Consensus 459 ~~~g~~p~~~ty~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~ 534 (592)
.+. ..| .+...+..++.. ...+.+|..+|+++.+. ..+++.+.+.+..++...|++++|..++.+....+ +
T Consensus 158 ~~~--~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~ 232 (290)
T PF04733_consen 158 QQI--DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-P 232 (290)
T ss_dssp HCC--SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--C
T ss_pred Hhc--CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-c
Confidence 864 334 445555555543 34689999999998765 56789999999999999999999999999987663 4
Q ss_pred CCHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHCCCCCCH
Q 007695 535 MGPDDFERIINGLLAGGFL-QDAQRVHGLMEAQGFAASE 572 (592)
Q Consensus 535 ~~~~~~~~li~a~~~~g~~-~~A~~l~~~m~~~g~~pd~ 572 (592)
-++++...++.+....|+. +.+.+++.+++.. .|+.
T Consensus 233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~--~p~h 269 (290)
T PF04733_consen 233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS--NPNH 269 (290)
T ss_dssp CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH--TTTS
T ss_pred CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh--CCCC
Confidence 4677887788888888887 6677888888764 5655
No 88
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.45 E-value=0.0015 Score=69.25 Aligned_cols=128 Identities=17% Similarity=0.089 Sum_probs=91.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 007695 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPG-PATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512 (592)
Q Consensus 434 t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~ 512 (592)
|+-.++..|-+.|+++.|..+++....+ .|+ ...|..-.+.+...|++++|..++.+..+... +|...-.--..-.
T Consensus 373 t~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-aDR~INsKcAKYm 449 (700)
T KOG1156|consen 373 TLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-ADRAINSKCAKYM 449 (700)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-hhHHHHHHHHHHH
Confidence 3445677888899999999999887664 455 35666677888999999999999999887653 3666655667777
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCC--CHH----HHHHH--HHHHHhCCCHHHHHHHHHHHH
Q 007695 513 ARAGIEKKALQALGFLEAKKEQM--GPD----DFERI--INGLLAGGFLQDAQRVHGLME 564 (592)
Q Consensus 513 ~~~g~~~~A~~~~~~m~~~~~~~--~~~----~~~~l--i~a~~~~g~~~~A~~l~~~m~ 564 (592)
.+..+.++|.++.......|... +-. .|..+ ..+|.+.|++-.|++-|..+.
T Consensus 450 LrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 450 LRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred HHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 78899999999888777655311 100 23333 467788888888877665544
No 89
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=0.00028 Score=73.22 Aligned_cols=368 Identities=13% Similarity=0.007 Sum_probs=235.0
Q ss_pred ccCCchhHHHHHHhh--cCC-CHhhHHHHHHHH-HhhCHHHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHHHcCCHHHHH
Q 007695 203 KEEDPSPLLAEWKEL--LQP-SRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTN-VRDYSKLIDAHAKENCLEDAE 277 (592)
Q Consensus 203 ~~g~~~~A~~~~~~~--~~p-~~~t~~~lL~~~-~~~~~~~~~~~~~~~~~~~~~~p~-~~~y~~Li~~~~~~g~~~~A~ 277 (592)
..|+++.|+..|-+. +.| |.+-|+--..++ ..+.++.+.+-..... ...|+ ...|+-+..++.-.|++++|+
T Consensus 14 s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~---~l~p~w~kgy~r~Gaa~~~lg~~~eA~ 90 (539)
T KOG0548|consen 14 SSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTR---RLNPDWAKGYSRKGAALFGLGDYEEAI 90 (539)
T ss_pred ccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHH---hcCCchhhHHHHhHHHHHhcccHHHHH
Confidence 789999999999876 333 455565555566 4556666666555443 24454 346999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH------HHHHhC---CCCCCHHHHHHHHHHHHHc-------C
Q 007695 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF------ESLRSH---GFQPDKKVYNSMIMAYVNA-------G 341 (592)
Q Consensus 278 ~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~------~~m~~~---g~~pd~~t~~~li~a~~~~-------g 341 (592)
.-|..-.+.. +-|...++-|..++.... .+.+.| ..+... ........|..++..+-+. .
T Consensus 91 ~ay~~GL~~d-~~n~~L~~gl~~a~~~~~---~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l 166 (539)
T KOG0548|consen 91 LAYSEGLEKD-PSNKQLKTGLAQAYLEDY---AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYL 166 (539)
T ss_pred HHHHHHhhcC-CchHHHHHhHHHhhhHHH---HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccc
Confidence 9999987763 236677777887772211 111111 111100 0000112333333332111 0
Q ss_pred CchHHHHHHHHHHH--------CC-------CCC------------C----------HHHHHHHHHHHHhCCCHHHHHHH
Q 007695 342 QPKLGMSLVDMMIT--------SG-------IER------------S----------EEIYLALLRSFAQCGDVRGAGQI 384 (592)
Q Consensus 342 ~~~~A~~l~~~m~~--------~g-------~~p------------~----------~~t~~~Ll~~~~~~g~~~~A~~~ 384 (592)
+.+........+.. .+ ..| | ..-...+.++..+..+++.+.+.
T Consensus 167 ~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~ 246 (539)
T KOG0548|consen 167 NDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQH 246 (539)
T ss_pred ccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHH
Confidence 11111111111110 00 111 0 11245677778888888889988
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHH
Q 007695 385 TNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR-------CTASMIAAYGKKNLLDKALNLLLE 457 (592)
Q Consensus 385 ~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~-------t~~~li~a~~~~g~~~~A~~l~~~ 457 (592)
+....... .+..-++....+|...|.+..+...-+...+.|-. ... .+..+-.+|.+.++++.|+.+|.+
T Consensus 247 y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~k 323 (539)
T KOG0548|consen 247 YAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQK 323 (539)
T ss_pred HHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHH
Confidence 88887764 56666777888899988888877777665554322 111 222334467777888899988887
Q ss_pred HHHCCCCCCHHH-------------------------HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 007695 458 LEKDGFEPGPAT-------------------------YTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512 (592)
Q Consensus 458 m~~~g~~p~~~t-------------------------y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~ 512 (592)
.......|+..+ ...-...+.+.|++..|...|.++++.... |...|..-.-+|
T Consensus 324 aLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~-Da~lYsNRAac~ 402 (539)
T KOG0548|consen 324 ALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPE-DARLYSNRAACY 402 (539)
T ss_pred HhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCc-hhHHHHHHHHHH
Confidence 655433333221 111234566789999999999999998755 889999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHhhhhh
Q 007695 513 ARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASE-RLKVALISSQTF 584 (592)
Q Consensus 513 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~g~~pd~-~~~~~l~~~~~~ 584 (592)
.+.|.+..|++=.+...+. .+..+..|..=..++....+++.|++.|++.++. .|+. .+...+..|...
T Consensus 403 ~kL~~~~~aL~Da~~~ieL-~p~~~kgy~RKg~al~~mk~ydkAleay~eale~--dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 403 LKLGEYPEALKDAKKCIEL-DPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL--DPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHhhHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CchhHHHHHHHHHHHHH
Confidence 9999999999988887776 3334556666677777778999999999998876 4777 788888888764
No 90
>PLN02789 farnesyltranstransferase
Probab=98.44 E-value=0.00033 Score=71.02 Aligned_cols=146 Identities=5% Similarity=-0.036 Sum_probs=83.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007695 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG-NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYV 338 (592)
Q Consensus 260 y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g-~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~ 338 (592)
+..+-..+...+..++|+.+++++.+.... +..+|+.--.++...| ++++++..++++.+.. +.+..+|+.....+.
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~ 117 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHH
Confidence 444445555566777777777777764322 3445555545555555 4667777777766553 334455665555555
Q ss_pred HcCCc--hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 007695 339 NAGQP--KLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQ 409 (592)
Q Consensus 339 ~~g~~--~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~ 409 (592)
+.|.. ++++.+++.+++.+.+ |..+|+....++.+.|+++++++.++++.+.+ +.|..+|+.....+.+
T Consensus 118 ~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~ 188 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITR 188 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHh
Confidence 55542 4556666666655433 55666666666666666666666666666555 3445555555444443
No 91
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.40 E-value=0.0012 Score=64.84 Aligned_cols=300 Identities=14% Similarity=0.078 Sum_probs=182.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH---HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH-H
Q 007695 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVL---VHMYSKAGNLDRAKEAFESLRSHGFQPDKKVY-N 331 (592)
Q Consensus 256 ~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~L---i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~-~ 331 (592)
++.-.--+...+..+|++..|+.-|...++- |+..|.++ ...|...|+..-|+.=|...++. +||-..- -
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARi 110 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARI 110 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHH
Confidence 3344455566666777777777777777664 33334333 34666667766777767666654 5663221 1
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHCCCCC--CHHH------------HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Q 007695 332 SMIMAYVNAGQPKLGMSLVDMMITSGIER--SEEI------------YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL 397 (592)
Q Consensus 332 ~li~a~~~~g~~~~A~~l~~~m~~~g~~p--~~~t------------~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 397 (592)
.-...+.+.|.++.|..=|+..++....- +... ....+..+...|+...|......+.+.. +-|.
T Consensus 111 QRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda 189 (504)
T KOG0624|consen 111 QRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDA 189 (504)
T ss_pred HhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchh
Confidence 22344567777777777777776653211 1111 1233444556777778888777777664 5567
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH----HHH-
Q 007695 398 ESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPAT----YTV- 472 (592)
Q Consensus 398 ~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t----y~~- 472 (592)
..|..-..+|...|.+..|+.=++..-+... -++.++--+-..+...|+.+.++...++.++ +.||... |-.
T Consensus 190 ~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKkl 266 (504)
T KOG0624|consen 190 SLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKL 266 (504)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHH
Confidence 7777777888888888887766665555322 2444555566666777777777777777665 3455321 111
Q ss_pred --HH------HHHHHcCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 007695 473 --LV------DWLGRLQLINEAEQLLGKISELGEAPP---FKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFE 541 (592)
Q Consensus 473 --li------~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 541 (592)
+. ......+++.++..-.+...+...... ...+..+..+|...|++.+|++...++... .+-|..++-
T Consensus 267 kKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~-d~~dv~~l~ 345 (504)
T KOG0624|consen 267 KKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI-DPDDVQVLC 345 (504)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc-CchHHHHHH
Confidence 11 122344666666666666665543311 234455667777788888888888877664 223466666
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHC
Q 007695 542 RIINGLLAGGFLQDAQRVHGLMEAQ 566 (592)
Q Consensus 542 ~li~a~~~~g~~~~A~~l~~~m~~~ 566 (592)
--..+|.-...++.|+.-|+...+.
T Consensus 346 dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 346 DRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 6677888888888888888877654
No 92
>PLN02789 farnesyltranstransferase
Probab=98.37 E-value=0.00045 Score=70.05 Aligned_cols=132 Identities=8% Similarity=-0.001 Sum_probs=66.4
Q ss_pred CHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH--HHHH
Q 007695 236 NTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKEN-CLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNL--DRAK 312 (592)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g-~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~--~~A~ 312 (592)
..+.++......+... +-+..+|+..-.++...| ++++++..++++.+.+.+ +..+|+.--..+.+.|+. +++.
T Consensus 52 ~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~el 128 (320)
T PLN02789 52 RSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANKEL 128 (320)
T ss_pred CCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHHHH
Confidence 3455555555554321 112223444444444444 456666666666554332 444455444444444432 4555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007695 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372 (592)
Q Consensus 313 ~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~ 372 (592)
.+++++.+.. +-|..+|+....++.+.|+++++++.++++++.++. |...|+.....+
T Consensus 129 ~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl 186 (320)
T PLN02789 129 EFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVI 186 (320)
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHH
Confidence 6665555443 345556666666666666666666666666665433 444554444433
No 93
>PF12854 PPR_1: PPR repeat
Probab=98.36 E-value=5.2e-07 Score=58.51 Aligned_cols=34 Identities=24% Similarity=0.440 Sum_probs=32.0
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007695 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMN 284 (592)
Q Consensus 251 ~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~ 284 (592)
.|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3789999999999999999999999999999984
No 94
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.35 E-value=7.3e-05 Score=79.92 Aligned_cols=218 Identities=13% Similarity=0.030 Sum_probs=155.0
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007695 328 KVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAY 407 (592)
Q Consensus 328 ~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~ 407 (592)
..-..+...+...|-...|..+|+++. .+.-+|-+|+..|+..+|..+..+..++ +||...|..+....
T Consensus 399 q~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVL 467 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhc
Confidence 334456666777788888888877763 4556777888888888888888777763 67888888888877
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007695 408 GQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487 (592)
Q Consensus 408 ~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~ 487 (592)
....-+++|.++++..... .-..+-......++++++.+.|+.-.+.. ..-..+|-.+-.+..+.+++..+.
T Consensus 468 ~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred cChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHH
Confidence 7777788888888765442 11111111233678888888887655432 223466777777777888888888
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 007695 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQ 566 (592)
Q Consensus 488 ~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~ 566 (592)
+.|.......+. +...||.+-.+|.+.|+-.+|...+++..+.+ .-+...|...+......|.+++|++.+.+|...
T Consensus 540 ~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 540 KAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 888887775544 67788888888888888888888888887775 445666777777788888888888888877643
No 95
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.32 E-value=0.00041 Score=79.05 Aligned_cols=226 Identities=11% Similarity=0.027 Sum_probs=142.8
Q ss_pred CCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Q 007695 324 QPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERS-----EEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLE 398 (592)
Q Consensus 324 ~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~-----~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 398 (592)
+.+...|-..|.-..+.++.++|.++.++.+.. +.+. ...|.++++.-...|.-+...++|+++.+. .-...
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~ 1531 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYT 1531 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHH
Confidence 444566777777777777777777777776653 2221 234556666655666666777777777654 22345
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHH
Q 007695 399 SCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPG---PATYTVLVD 475 (592)
Q Consensus 399 ~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~---~~ty~~li~ 475 (592)
.|..|...|.+.+..++|.++|+.|.+. ..-....|...+..+.+.++-+.|..++.+..+. -|. .....-.++
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAq 1608 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQ 1608 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHH
Confidence 6677777777777777777777777764 1134556777777777777777777777776553 232 233444555
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhCCCH
Q 007695 476 WLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGP--DDFERIINGLLAGGFL 553 (592)
Q Consensus 476 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~li~a~~~~g~~ 553 (592)
.-.+.|+.+.+..+|......-++ -...|+.++++-.++|+.+.++.+|+++...+..+.. ..|...+.-=-++|+-
T Consensus 1609 LEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde 1687 (1710)
T KOG1070|consen 1609 LEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDE 1687 (1710)
T ss_pred HHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCch
Confidence 556777777777777777665443 4567777777777777777777777777776655432 2344444444455554
Q ss_pred HHH
Q 007695 554 QDA 556 (592)
Q Consensus 554 ~~A 556 (592)
..+
T Consensus 1688 ~~v 1690 (1710)
T KOG1070|consen 1688 KNV 1690 (1710)
T ss_pred hhH
Confidence 433
No 96
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.32 E-value=0.00051 Score=75.75 Aligned_cols=306 Identities=15% Similarity=0.178 Sum_probs=159.8
Q ss_pred HHcccccCCchhHHHHHHhh-cCCCHhhHHHHHH------HHHhhCHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHc
Q 007695 198 ILSLEKEEDPSPLLAEWKEL-LQPSRIDWINLLD------RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKE 270 (592)
Q Consensus 198 l~~~~~~g~~~~A~~~~~~~-~~p~~~t~~~lL~------~~~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~ 270 (592)
+.++-..+-+.+-+++++++ ++|++++=|.=|. +++.. .....+.+.. -..+..+ .+...+...
T Consensus 991 VkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad-~trVm~YI~r---LdnyDa~-----~ia~iai~~ 1061 (1666)
T KOG0985|consen 991 VKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKAD-RTRVMEYINR---LDNYDAP-----DIAEIAIEN 1061 (1666)
T ss_pred HHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcC-hHHHHHHHHH---hccCCch-----hHHHHHhhh
Confidence 33444677778888888876 5666666443333 22221 1112222222 1222211 223445566
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHH
Q 007695 271 NCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLV 350 (592)
Q Consensus 271 g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~ 350 (592)
+-+++|..+|++... +....+.||. .-+.++.|.++-++.. ....|..+..+-.+.|...+|++-|
T Consensus 1062 ~LyEEAF~ifkkf~~-----n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieSy 1127 (1666)
T KOG0985|consen 1062 QLYEEAFAIFKKFDM-----NVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIESY 1127 (1666)
T ss_pred hHHHHHHHHHHHhcc-----cHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHHH
Confidence 667778777776432 4444444443 2345555555544433 3346667777776777766666554
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 007695 351 DMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430 (592)
Q Consensus 351 ~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~p 430 (592)
-+. + |+..|..+++.+.+.|.+++-.+.+.-.++..-.|.+. +.||-+|++.+++.+.+++.. .|
T Consensus 1128 ika---d---Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~-------gp 1192 (1666)
T KOG0985|consen 1128 IKA---D---DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA-------GP 1192 (1666)
T ss_pred Hhc---C---CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc-------CC
Confidence 332 1 55667777777777777777766666555554444433 456667777766665544332 25
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 007695 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCD 510 (592)
Q Consensus 431 d~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~ 510 (592)
+......+-+-|...|.++.|.-+|... .-|..|...+...|.+..|...-++.. +..+|..+..
T Consensus 1193 N~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKAn------s~ktWK~Vcf 1257 (1666)
T KOG0985|consen 1193 NVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKAN------STKTWKEVCF 1257 (1666)
T ss_pred CchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhcc------chhHHHHHHH
Confidence 5555556666666666666666555432 334455555555555555544433321 4455555555
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 007695 511 MYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHG 561 (592)
Q Consensus 511 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~ 561 (592)
+|...+.+.-| +|-..+.....+-..-++.-|-..|.+++-+.+++
T Consensus 1258 aCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~E 1303 (1666)
T KOG0985|consen 1258 ACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLE 1303 (1666)
T ss_pred HHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHH
Confidence 55544433332 22222222333334445555555555555554444
No 97
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=0.0082 Score=63.24 Aligned_cols=136 Identities=15% Similarity=0.046 Sum_probs=83.5
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH--------HHHhcCCCCCHHHHHHHHHHHHHcCCH
Q 007695 447 LLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLG--------KISELGEAPPFKIQVSLCDMYARAGIE 518 (592)
Q Consensus 447 ~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~--------~m~~~g~~p~~~~~~~Li~~~~~~g~~ 518 (592)
...+|..++...-+....-........++.....|+++.|..++. .+.+.+.. +.+...+...|.+.++.
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~--P~~V~aiv~l~~~~~~~ 433 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHL--PGTVGAIVALYYKIKDN 433 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccC--hhHHHHHHHHHHhccCC
Confidence 455666666655443211224556667778888999999999998 55555544 34556677778888887
Q ss_pred HHHHHHHHHHHHc--CCCCCHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHhhhhhc
Q 007695 519 KKALQALGFLEAK--KEQMGPDD----FERIINGLLAGGFLQDAQRVHGLMEAQGFAASE-RLKVALISSQTFN 585 (592)
Q Consensus 519 ~~A~~~~~~m~~~--~~~~~~~~----~~~li~a~~~~g~~~~A~~l~~~m~~~g~~pd~-~~~~~l~~~~~~~ 585 (592)
+.|..++...... ...+.... +.-+...-.+.|+.++|..+++++.... .+|. ..-..+.+.+..+
T Consensus 434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~d 506 (652)
T KOG2376|consen 434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARLD 506 (652)
T ss_pred ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhcC
Confidence 7777777765431 11122222 3333344457799999999999998742 3333 4445555555443
No 98
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.29 E-value=0.0017 Score=71.75 Aligned_cols=308 Identities=12% Similarity=0.056 Sum_probs=192.9
Q ss_pred ccCCchhHHHHHHhhcCCCHhhHHHHHHHHHhhCHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007695 203 KEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKK 282 (592)
Q Consensus 203 ~~g~~~~A~~~~~~~~~p~~~t~~~lL~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~ 282 (592)
.++-+++|..+|+.. +-+....+.|+.-. ++.+.+.+.++.. -.+..|+.+..+-.+.|.+.+|.+-|-+
T Consensus 1060 ~~~LyEEAF~ifkkf-~~n~~A~~VLie~i--~~ldRA~efAe~~-------n~p~vWsqlakAQL~~~~v~dAieSyik 1129 (1666)
T KOG0985|consen 1060 ENQLYEEAFAIFKKF-DMNVSAIQVLIENI--GSLDRAYEFAERC-------NEPAVWSQLAKAQLQGGLVKDAIESYIK 1129 (1666)
T ss_pred hhhHHHHHHHHHHHh-cccHHHHHHHHHHh--hhHHHHHHHHHhh-------CChHHHHHHHHHHHhcCchHHHHHHHHh
Confidence 455556677776653 33444444444432 2334444444432 2334677888888888888888776633
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCH
Q 007695 283 MNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSE 362 (592)
Q Consensus 283 m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~ 362 (592)
. -|+..|..++....+.|.+++-.+.+...++..-.|.+. +.||-+|++.++..+..+++ .-||.
T Consensus 1130 a------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-------~gpN~ 1194 (1666)
T KOG0985|consen 1130 A------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI-------AGPNV 1194 (1666)
T ss_pred c------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-------cCCCc
Confidence 2 267778888888888888888888887776665455544 47788888888876655543 34677
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007695 363 EIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAY 442 (592)
Q Consensus 363 ~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~ 442 (592)
.....+.+-|...+.++.|.-+|.. +.-|..|...+...|++..|...-++. .+..||-.+-.+|
T Consensus 1195 A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaC 1259 (1666)
T KOG0985|consen 1195 ANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFAC 1259 (1666)
T ss_pred hhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHH
Confidence 7777777778888888877777653 344666777777778877776655443 3567787777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007695 443 GKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKAL 522 (592)
Q Consensus 443 ~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~ 522 (592)
...+.+.-| +|-..++.....-..-++..|...|-+++...+++...... +.....|+-|.-.|++- ++++..
T Consensus 1260 vd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE-RAHMgmfTELaiLYsky-kp~km~ 1332 (1666)
T KOG0985|consen 1260 VDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE-RAHMGMFTELAILYSKY-KPEKMM 1332 (1666)
T ss_pred hchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh-HHHHHHHHHHHHHHHhc-CHHHHH
Confidence 766655433 22222334455667778888888888888888877654321 23556777777777765 345555
Q ss_pred HHHHHHHHcCCCC-------CHHHHHHHHHHHHhCCCHHHHH
Q 007695 523 QALGFLEAKKEQM-------GPDDFERIINGLLAGGFLQDAQ 557 (592)
Q Consensus 523 ~~~~~m~~~~~~~-------~~~~~~~li~a~~~~g~~~~A~ 557 (592)
+.++..-.+-..| ....|+-+.-.|.+-..++.|.
T Consensus 1333 EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1333 EHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 4444332221111 1234666776776666666553
No 99
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.28 E-value=8.2e-05 Score=79.56 Aligned_cols=234 Identities=12% Similarity=0.021 Sum_probs=178.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007695 258 RDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337 (592)
Q Consensus 258 ~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~ 337 (592)
..-..+...+.+.|-...|..+|+++. .|.-.|-+|+..|+..+|..+..+..+. +||...|..+.+..
T Consensus 399 q~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVL 467 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhc
Confidence 334566778889999999999998764 4777888999999999999999888874 78999999988887
Q ss_pred HHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007695 338 VNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQAR 417 (592)
Q Consensus 338 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~ 417 (592)
....-+++|.++.+..-.. .-..+.....+.+++.++.+.|+.-.... +....+|-.+..+..+.++++.|.
T Consensus 468 ~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred cChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHH
Confidence 7777778888887765332 22223333345788999999998877765 567888999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 007695 418 SNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497 (592)
Q Consensus 418 ~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g 497 (592)
+.|.......+ -+...||.+-.+|.+.++-.+|...+.+..+.+ .-+...+...+....+.|.+++|.+.+.++.+..
T Consensus 540 ~aF~rcvtL~P-d~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 540 KAFHRCVTLEP-DNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHHHhhcCC-CchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 99998887433 256789999999999999999999999988876 4445566667777889999999999999876432
Q ss_pred C-CCCHHHHHHHHHHH
Q 007695 498 E-APPFKIQVSLCDMY 512 (592)
Q Consensus 498 ~-~p~~~~~~~Li~~~ 512 (592)
. ..+..+...++..-
T Consensus 618 ~~~~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 618 KKYKDDEVLLIIVRTV 633 (777)
T ss_pred hhcccchhhHHHHHHH
Confidence 1 12444444444443
No 100
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.28 E-value=0.0026 Score=74.75 Aligned_cols=270 Identities=16% Similarity=0.062 Sum_probs=180.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CC-CCCHHHHHHH
Q 007695 263 LIDAHAKENCLEDAERILKKMNENGIVPDI----VTSTVLVHMYSKAGNLDRAKEAFESLRSH----GF-QPDKKVYNSM 333 (592)
Q Consensus 263 Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~----~~~~~Li~~~~~~g~~~~A~~~~~~m~~~----g~-~pd~~t~~~l 333 (592)
+...+...|+++.|...++.....-...+. ...+.+...+...|++++|...+.+.... |- .....+++.+
T Consensus 458 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~l 537 (903)
T PRK04841 458 RAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQ 537 (903)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHH
Confidence 334566799999999999998763111222 24456667778899999999999887642 20 1112355666
Q ss_pred HHHHHHcCCchHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--CCC--CHHHHHH
Q 007695 334 IMAYVNAGQPKLGMSLVDMMITS----GIE--R-SEEIYLALLRSFAQCGDVRGAGQITNIMRIEE--FQP--TLESCTL 402 (592)
Q Consensus 334 i~a~~~~g~~~~A~~l~~~m~~~----g~~--p-~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g--~~~--~~~~~~~ 402 (592)
...+...|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+ ....+..
T Consensus 538 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 617 (903)
T PRK04841 538 SEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAM 617 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHH
Confidence 77888999999999998876552 211 1 23345556667778899999999988875431 112 2344555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHH
Q 007695 403 LVEAYGQAGDPDQARSNFDYMIRLGH-KPDDRCT-----ASMIAAYGKKNLLDKALNLLLELEKDGFEPG---PATYTVL 473 (592)
Q Consensus 403 Li~~~~~~g~~~~A~~lf~~m~~~g~-~pd~~t~-----~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~---~~ty~~l 473 (592)
+...+...|+++.|...+........ ......+ ...+..+...|+.+.|..++........... ...+..+
T Consensus 618 la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~ 697 (903)
T PRK04841 618 LAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNI 697 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHH
Confidence 67788899999999999988755211 1111111 1122445668999999999877544221111 1124566
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhc----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 007695 474 VDWLGRLQLINEAEQLLGKISEL----GEAP-PFKIQVSLCDMYARAGIEKKALQALGFLEAKK 532 (592)
Q Consensus 474 i~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~ 532 (592)
..++...|+.++|...+++.... |..+ ...+...+..++.+.|+.++|...+.+..+..
T Consensus 698 a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 698 ARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 77888999999999999987643 2222 23466677888999999999999999887653
No 101
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.27 E-value=0.00056 Score=77.99 Aligned_cols=203 Identities=11% Similarity=0.100 Sum_probs=133.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 007695 258 RDYSKLIDAHAKENCLEDAERILKKMNENGIVPD-----IVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332 (592)
Q Consensus 258 ~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd-----~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ 332 (592)
..|-.-|......++++.|.+++++.... +.+. ...|.++++.-...|.-+...++|+++.+.. ---..|..
T Consensus 1459 i~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~~ 1535 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHLK 1535 (1710)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHHH
Confidence 34666666777777777777777776654 2221 2356666666666676677777777777642 12345667
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHc
Q 007695 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP--TLESCTLLVEAYGQA 410 (592)
Q Consensus 333 li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~Li~~~~~~ 410 (592)
|...|.+.+.+++|-++|+.|.+. +.-....|...+..+.+.++-+.|..++.+..+.- +. .+....-.+..-.+.
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l-Pk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSL-PKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc-chhhhHHHHHHHHHHHhhc
Confidence 777777777777777777777764 33456677777777777777777777777666542 11 234444555566677
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 007695 411 GDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPG 466 (592)
Q Consensus 411 g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~ 466 (592)
|+.+.+..+|+......++ -...|+..|+.=.++|+.+.+..+|++....++.|-
T Consensus 1614 GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred CCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 7777777777777665333 456677777777777777777777777777666554
No 102
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.26 E-value=0.00025 Score=68.99 Aligned_cols=187 Identities=16% Similarity=0.128 Sum_probs=128.7
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--H
Q 007695 359 ERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT---LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD--R 433 (592)
Q Consensus 359 ~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~--~ 433 (592)
......+..+...+.+.|+++.|...++++.... +.+ ..++..+..+|.+.|++++|...|+++.+..+.... .
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 3456778888888999999999999999887764 222 246777888999999999999999999875442222 1
Q ss_pred HHHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHH
Q 007695 434 CTASMIAAYGKK--------NLLDKALNLLLELEKDGFEPGPA-TYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKI 504 (592)
Q Consensus 434 t~~~li~a~~~~--------g~~~~A~~l~~~m~~~g~~p~~~-ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~ 504 (592)
++..+..++.+. |+.++|...|+.+... .|+.. ....+... .. ... .. ...
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~-~~---~~~------~~--------~~~ 168 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM-DY---LRN------RL--------AGK 168 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH-HH---HHH------HH--------HHH
Confidence 344444455544 6788888888888764 34322 22211111 00 000 00 011
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 007695 505 QVSLCDMYARAGIEKKALQALGFLEAKKE--QMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQ 566 (592)
Q Consensus 505 ~~~Li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~ 566 (592)
...+...|.+.|++.+|...++....... +..+..+..+..++...|++++|..+++.+...
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 23566778999999999999999887532 223567889999999999999999999988754
No 103
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.25 E-value=0.0047 Score=64.36 Aligned_cols=345 Identities=12% Similarity=0.116 Sum_probs=196.0
Q ss_pred CHhhHHHHHHHHHhhCHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007695 221 SRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVH 300 (592)
Q Consensus 221 ~~~t~~~lL~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~ 300 (592)
|..+|+.||.-+.....+......+.++.. ++-....|..-|..-.+.++++..+++|.+....- .+...|..-|+
T Consensus 19 di~sw~~lire~qt~~~~~~R~~YEq~~~~--FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lYl~ 94 (656)
T KOG1914|consen 19 DIDSWSQLIREAQTQPIDKVRETYEQLVNV--FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLYLS 94 (656)
T ss_pred cHHHHHHHHHHHccCCHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHHHH
Confidence 788899999998666888888888888754 45566778888999999999999999999987753 35667777775
Q ss_pred HHHHc-CCHHH----HHHHHHHHH-hCCCCCC-HHHHHHHHHHH---------HHcCCchHHHHHHHHHHHCCCCCCHHH
Q 007695 301 MYSKA-GNLDR----AKEAFESLR-SHGFQPD-KKVYNSMIMAY---------VNAGQPKLGMSLVDMMITSGIERSEEI 364 (592)
Q Consensus 301 ~~~~~-g~~~~----A~~~~~~m~-~~g~~pd-~~t~~~li~a~---------~~~g~~~~A~~l~~~m~~~g~~p~~~t 364 (592)
.--+. ++... ..+.|+-.. +.|+.+- -..|+..+.-+ ..+.+.+...++|++++...+.-=...
T Consensus 95 YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkL 174 (656)
T KOG1914|consen 95 YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKL 174 (656)
T ss_pred HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHH
Confidence 54432 33333 334455443 4454332 23456555433 334456677788888775432211111
Q ss_pred HH------HHHHH-------HHhCCCHHHHHHHHHHHHHc--CCCCCH---------------HHHHHHHH---------
Q 007695 365 YL------ALLRS-------FAQCGDVRGAGQITNIMRIE--EFQPTL---------------ESCTLLVE--------- 405 (592)
Q Consensus 365 ~~------~Ll~~-------~~~~g~~~~A~~~~~~m~~~--g~~~~~---------------~~~~~Li~--------- 405 (592)
|+ .=|+. --+...+..|.++++++... |+..+. ..|-.+|.
T Consensus 175 W~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t 254 (656)
T KOG1914|consen 175 WKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRT 254 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCccc
Confidence 11 11111 01223344555555554321 211110 01211111
Q ss_pred ----------------------------------------HHHHcCC-------HHHHHHHHHHHHHcCCCCCHHHHHHH
Q 007695 406 ----------------------------------------AYGQAGD-------PDQARSNFDYMIRLGHKPDDRCTASM 438 (592)
Q Consensus 406 ----------------------------------------~~~~~g~-------~~~A~~lf~~m~~~g~~pd~~t~~~l 438 (592)
.+...|+ -+++..+++.....-..-+..+|..+
T Consensus 255 ~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~ 334 (656)
T KOG1914|consen 255 LDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFAL 334 (656)
T ss_pred ccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0111111 12222233222221111111122211
Q ss_pred HHHHH---hcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHH
Q 007695 439 IAAYG---KKNLLDKALNLLLELEKD-GFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP-PFKIQVSLCDMYA 513 (592)
Q Consensus 439 i~a~~---~~g~~~~A~~l~~~m~~~-g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~Li~~~~ 513 (592)
.+.-- .-+..+.....+.++... ...|+ -+|..++....+..-+..|..+|.++.+.+..+ ++.++++++..|+
T Consensus 335 a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c 413 (656)
T KOG1914|consen 335 ADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC 413 (656)
T ss_pred HhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh
Confidence 11100 011234444455555443 33343 467777777778888888999999888877766 6777788887665
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH
Q 007695 514 RAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASE 572 (592)
Q Consensus 514 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~g~~pd~ 572 (592)
.++.+-|.++|+.-..+ ..-++.--...+.-+...++-..|..+|++....++.|+.
T Consensus 414 -skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~k 470 (656)
T KOG1914|consen 414 -SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADK 470 (656)
T ss_pred -cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhh
Confidence 56788888888865544 3334444466777778888888888888888888777776
No 104
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.25 E-value=8.5e-05 Score=77.54 Aligned_cols=218 Identities=14% Similarity=0.048 Sum_probs=154.5
Q ss_pred HHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 007695 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA 416 (592)
Q Consensus 337 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A 416 (592)
+.+.|++.+|.-.|+..+..+.. +...|..|.......++-..|+..+.+..+.. +.|..+.-.|.-.|...|.-..|
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence 45677788888888877776533 67777777777777777777888887777765 55677778888888888888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHH-----------HHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHcCCHH
Q 007695 417 RSNFDYMIRLGHKPDDRCTASMI-----------AAYGKKNLLDKALNLLLELEK-DGFEPGPATYTVLVDWLGRLQLIN 484 (592)
Q Consensus 417 ~~lf~~m~~~g~~pd~~t~~~li-----------~a~~~~g~~~~A~~l~~~m~~-~g~~p~~~ty~~li~~~~~~g~~~ 484 (592)
...|+......++ |..+. ..+.....+....++|-++.. .+..+|+.....|--.|--.|.++
T Consensus 373 l~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 373 LKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred HHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 8888776553221 00000 011111223344555555543 355577777888887888889999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 007695 485 EAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG-PDDFERIINGLLAGGFLQDAQRVHGLM 563 (592)
Q Consensus 485 ~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~a~~~~g~~~~A~~l~~~m 563 (592)
+|...|+......+. |..+||-|...++...+.++|...|.+..+. .|+ +.....|...|...|.+++|.+.|-..
T Consensus 448 raiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 448 RAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 999999988876555 7889999999999999999999999988875 333 334445788889999999998887654
Q ss_pred H
Q 007695 564 E 564 (592)
Q Consensus 564 ~ 564 (592)
+
T Consensus 525 L 525 (579)
T KOG1125|consen 525 L 525 (579)
T ss_pred H
Confidence 4
No 105
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.24 E-value=0.00023 Score=69.21 Aligned_cols=185 Identities=17% Similarity=0.105 Sum_probs=99.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-H---H
Q 007695 255 TNVRDYSKLIDAHAKENCLEDAERILKKMNENGIV-PD-IVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPD-K---K 328 (592)
Q Consensus 255 p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~-pd-~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~---~ 328 (592)
.....+-.+...+.+.|+++.|...|+++...... |. ...+..+..++...|++++|...|+++.+.. |+ . .
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--PNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCchHH
Confidence 34556667777778888888888888887765221 11 1355667777788888888888888877542 22 1 1
Q ss_pred HHHHHHHHHHHc--------CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Q 007695 329 VYNSMIMAYVNA--------GQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESC 400 (592)
Q Consensus 329 t~~~li~a~~~~--------g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 400 (592)
++..+..++.+. |++++|.+.|+.+...... +...+..+..... .. ... ....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~------~~~--------~~~~ 169 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LR------NRL--------AGKE 169 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HH------HHH--------HHHH
Confidence 344444455443 4556666666666554211 1122211111100 00 000 0011
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007695 401 TLLVEAYGQAGDPDQARSNFDYMIRLGH-KP-DDRCTASMIAAYGKKNLLDKALNLLLELEK 460 (592)
Q Consensus 401 ~~Li~~~~~~g~~~~A~~lf~~m~~~g~-~p-d~~t~~~li~a~~~~g~~~~A~~l~~~m~~ 460 (592)
..+...|.+.|++.+|...|.......+ .| ....+..+..++.+.|++++|..+++.+..
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 2344456666666666666666655322 11 234555666666666666666666665544
No 106
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.22 E-value=0.00021 Score=74.63 Aligned_cols=252 Identities=15% Similarity=0.089 Sum_probs=159.8
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHH
Q 007695 301 MYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRG 380 (592)
Q Consensus 301 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~ 380 (592)
-+.+.|++.+|.-.|+...+.. +-+...|--|......+++-..|+..+.+..+.+.. |......|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHH
Confidence 3456777777777777766553 445667777777777777777777777777765432 56667777777777777777
Q ss_pred HHHHHHHHHHcCCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007695 381 AGQITNIMRIEEFQ--------PTLESCTLLVEAYGQAGDPDQARSNFDYMIR-LGHKPDDRCTASMIAAYGKKNLLDKA 451 (592)
Q Consensus 381 A~~~~~~m~~~g~~--------~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~-~g~~pd~~t~~~li~a~~~~g~~~~A 451 (592)
|...++.-.....+ ++...-.. ..+.....+....++|-++.. .+.++|......|--.|.-.|++++|
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 77777766543200 00000000 111222233444555555544 45456677777777778888888888
Q ss_pred HHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007695 452 LNLLLELEKDGFEPG-PATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEA 530 (592)
Q Consensus 452 ~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~ 530 (592)
.+.|+..+. ++|+ ..+||-|-..++...+..+|..-|++..+..+. -+.+...|.-.|...|.+++|.+.|-....
T Consensus 450 iDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~-yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 450 VDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPG-YVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC-eeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 888888776 3454 567888888888888888888888888875332 234555677778888888888887755432
Q ss_pred ---cC------CCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 007695 531 ---KK------EQMGPDDFERIINGLLAGGFLQDAQRV 559 (592)
Q Consensus 531 ---~~------~~~~~~~~~~li~a~~~~g~~~~A~~l 559 (592)
++ ..++...|..|=.++.-.++.|-+.+.
T Consensus 527 mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 527 MQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 21 111234677776677767776644443
No 107
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.20 E-value=0.0058 Score=66.22 Aligned_cols=356 Identities=15% Similarity=0.095 Sum_probs=219.2
Q ss_pred HHHHHhhcccccCCCCCCCCcchHHHHHHHH-cccccCCchhHHHHHHhh--cC--CCHhhHHHHHHHHHhh---CHHHH
Q 007695 169 AEKIHERGEMILPEEPKPITGKCKLITDKIL-SLEKEEDPSPLLAEWKEL--LQ--PSRIDWINLLDRLREQ---NTQLY 240 (592)
Q Consensus 169 ~~~~~ea~~~f~~~~~~~~~~~~~~~~~~l~-~~~~~g~~~~A~~~~~~~--~~--p~~~t~~~lL~~~~~~---~~~~~ 240 (592)
.|++..+.+.| +...+..-........+. ++.-.|.-..|..+.+.. .. |+..+--.+...++.. ..++.
T Consensus 336 ~g~f~~lae~f--E~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eeg 413 (799)
T KOG4162|consen 336 CGQFEVLAEQF--EQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEG 413 (799)
T ss_pred HHHHHHHHHHH--HHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhH
Confidence 45666666666 222222222222333333 333778888888888765 23 5545544444433332 24444
Q ss_pred HHHHHHHhhhCCC---CCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 007695 241 FKVAELVLSEESF---QTNVRDYSKLIDAHAKE-----------NCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306 (592)
Q Consensus 241 ~~~~~~~~~~~~~---~p~~~~y~~Li~~~~~~-----------g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g 306 (592)
...+.+.++..+- ......|-.+.-+|... ....++++.+++..+.+.. |..+.-.+.--|+..+
T Consensus 414 ldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-dp~~if~lalq~A~~R 492 (799)
T KOG4162|consen 414 LDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT-DPLVIFYLALQYAEQR 492 (799)
T ss_pred HHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHHH
Confidence 4444444431111 12333455555555432 1235678888888776433 3333333455677888
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHC-CCC------------------CCHHHHHH
Q 007695 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS-GIE------------------RSEEIYLA 367 (592)
Q Consensus 307 ~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~-g~~------------------p~~~t~~~ 367 (592)
+++.|.+...+..+.+-.-+...|..+.-.+...+++..|+.+.+..... |.. --..|+..
T Consensus 493 ~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~ 572 (799)
T KOG4162|consen 493 QLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIH 572 (799)
T ss_pred hHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHH
Confidence 99999999999988755778889999999999999999999988776542 210 01122223
Q ss_pred HHHHHHh------C-----------------CCHHHHHHHHHHH--------HHcC---------CC--CC------HHH
Q 007695 368 LLRSFAQ------C-----------------GDVRGAGQITNIM--------RIEE---------FQ--PT------LES 399 (592)
Q Consensus 368 Ll~~~~~------~-----------------g~~~~A~~~~~~m--------~~~g---------~~--~~------~~~ 399 (592)
++..+-. . .+..++.+....+ ...+ +. |+ ...
T Consensus 573 ~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~l 652 (799)
T KOG4162|consen 573 KLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKL 652 (799)
T ss_pred HHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHH
Confidence 3322220 0 0111111111111 0011 00 11 123
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 007695 400 CTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPG-PATYTVLVDWLG 478 (592)
Q Consensus 400 ~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~ 478 (592)
|......+.+.++.++|...+.+.....+ -....|...-..+...|...+|...|..... +.|+ +....++..++.
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~~~-l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~ll 729 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKIDP-LSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLL 729 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcch-hhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHH
Confidence 44556677788888888877777665322 2445566555677788999999999988766 4454 567888999999
Q ss_pred HcCCHHHHHH--HHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 007695 479 RLQLINEAEQ--LLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAK 531 (592)
Q Consensus 479 ~~g~~~~A~~--l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~ 531 (592)
..|+..-+.. ++..+.+.+.. +...|..+...+.+.|+.+.|...|+...+.
T Consensus 730 e~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 730 ELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 9998887777 99999998776 8999999999999999999999999977664
No 108
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.19 E-value=0.0025 Score=61.49 Aligned_cols=316 Identities=14% Similarity=0.083 Sum_probs=167.0
Q ss_pred ccccCCchhHHHHHHhhc--CC-CHhhHHHHHHHH-HhhCHHHHHHHHHHHhhhCCCCCCHHHHHHH-HHHHHHcCCHHH
Q 007695 201 LEKEEDPSPLLAEWKELL--QP-SRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKL-IDAHAKENCLED 275 (592)
Q Consensus 201 ~~~~g~~~~A~~~~~~~~--~p-~~~t~~~lL~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~L-i~~~~~~g~~~~ 275 (592)
+.+..++++|++.+..-. .| ++...+.+-.++ ..+....+....+++-. ..|...-|..- ...+.+.+.+..
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q---l~P~~~qYrlY~AQSLY~A~i~AD 96 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ---LHPELEQYRLYQAQSLYKACIYAD 96 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hChHHHHHHHHHHHHHHHhcccHH
Confidence 346667777777765432 23 444444444444 44445555555444322 24544444332 345566777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 007695 276 AERILKKMNENGIVPDIVTSTVLVHMY--SKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMM 353 (592)
Q Consensus 276 A~~l~~~m~~~g~~pd~~~~~~Li~~~--~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m 353 (592)
|+.+...|... |+...-..-+.+. -..+++..+..+.++....| +..+.+.......+.|+++.|.+-|+..
T Consensus 97 ALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaA 170 (459)
T KOG4340|consen 97 ALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAA 170 (459)
T ss_pred HHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHHH
Confidence 77777776542 2222222222222 23567777777777776433 5555555555666778888888888777
Q ss_pred HHC-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-------------CHH---------------HHHHHH
Q 007695 354 ITS-GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP-------------TLE---------------SCTLLV 404 (592)
Q Consensus 354 ~~~-g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~-------------~~~---------------~~~~Li 404 (592)
.+- |.. ....|+..+..| +.++++.|++...++.++|+.- |+. .+|.-.
T Consensus 171 lqvsGyq-pllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKa 248 (459)
T KOG4340|consen 171 LQVSGYQ-PLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKA 248 (459)
T ss_pred HhhcCCC-chhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhh
Confidence 664 343 445666555444 5577778888888887777641 111 122223
Q ss_pred HHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 007695 405 EAYGQAGDPDQARSNFDYMIRL-GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLI 483 (592)
Q Consensus 405 ~~~~~~g~~~~A~~lf~~m~~~-g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~ 483 (592)
..+.+.|+++.|.+.+-+|.-. ....|.+|...+.-. -..+++-...+-+.-+...+ +....||..++-.||+..-+
T Consensus 249 AIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf 326 (459)
T KOG4340|consen 249 AIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYF 326 (459)
T ss_pred hhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHH
Confidence 3445667777777777666542 223455555543221 12233433344444444432 22346777777777777777
Q ss_pred HHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007695 484 NEAEQLLGKISELGEA-PPFKIQVSLCDMYARAGIEKKALQALGFLE 529 (592)
Q Consensus 484 ~~A~~l~~~m~~~g~~-p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~ 529 (592)
+.|..++.+=...-.. .+...|+.|=..-...-..++|.+-++.+.
T Consensus 327 ~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 327 DLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred hHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 7777666543322111 123333332222223345556655555443
No 109
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.15 E-value=0.01 Score=62.54 Aligned_cols=372 Identities=12% Similarity=0.033 Sum_probs=204.4
Q ss_pred HHHHHhhcccccCCCCCCCCcchHHHHHHHHc-ccccCCchhHHHHHHhhcCCCHhhHHHHHHHH--HhhCHHHHHHHHH
Q 007695 169 AEKIHERGEMILPEEPKPITGKCKLITDKILS-LEKEEDPSPLLAEWKELLQPSRIDWINLLDRL--REQNTQLYFKVAE 245 (592)
Q Consensus 169 ~~~~~ea~~~f~~~~~~~~~~~~~~~~~~l~~-~~~~g~~~~A~~~~~~~~~p~~~t~~~lL~~~--~~~~~~~~~~~~~ 245 (592)
.+.++||...+. ..+..+.. +...=.. +||.|++++|+.+++.+.+-+...+..-+.+- +... .....
T Consensus 92 lnk~Dealk~~~--~~~~~~~~---ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a----~l~~~ 162 (652)
T KOG2376|consen 92 LNKLDEALKTLK--GLDRLDDK---LLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA----ALQVQ 162 (652)
T ss_pred cccHHHHHHHHh--cccccchH---HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH----hhhHH
Confidence 467777877772 11222222 2222223 45999999999999998655544444444321 1111 11111
Q ss_pred HHhhhCCCCCCHHHHHHH---HHHHHHcCCHHHHHHHHHHHHHCC-------------CCCCHH-HHHHHHHHHHHcCCH
Q 007695 246 LVLSEESFQTNVRDYSKL---IDAHAKENCLEDAERILKKMNENG-------------IVPDIV-TSTVLVHMYSKAGNL 308 (592)
Q Consensus 246 ~~~~~~~~~p~~~~y~~L---i~~~~~~g~~~~A~~l~~~m~~~g-------------~~pd~~-~~~~Li~~~~~~g~~ 308 (592)
.+......| ..+|..+ ...+...|++.+|+++++...+.+ +.-... .-.-|..++...|+.
T Consensus 163 -~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt 240 (652)
T KOG2376|consen 163 -LLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQT 240 (652)
T ss_pred -HHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcch
Confidence 122222233 2244433 345667899999999999883221 010111 123456677788999
Q ss_pred HHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHHcCCch-HHHHHHHHHHHCC-----------CCCCHHHHHHHHHHH
Q 007695 309 DRAKEAFESLRSHGFQPDKK----VYNSMIMAYVNAGQPK-LGMSLVDMMITSG-----------IERSEEIYLALLRSF 372 (592)
Q Consensus 309 ~~A~~~~~~m~~~g~~pd~~----t~~~li~a~~~~g~~~-~A~~l~~~m~~~g-----------~~p~~~t~~~Ll~~~ 372 (592)
++|..+|....+.. .+|.. .-|.++..-....-++ .++..++...... -.-....-+.++..|
T Consensus 241 ~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~ 319 (652)
T KOG2376|consen 241 AEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF 319 (652)
T ss_pred HHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998775 44542 2333333221111122 1222222211110 000111112333333
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 007695 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQ--AGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDK 450 (592)
Q Consensus 373 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~--~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~ 450 (592)
. +..+.+.++....... .|. ..+.+++....+ ...+..|..++...-+....-.....-.++......|+++.
T Consensus 320 t--nk~~q~r~~~a~lp~~--~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~ 394 (652)
T KOG2376|consen 320 T--NKMDQVRELSASLPGM--SPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEV 394 (652)
T ss_pred h--hhHHHHHHHHHhCCcc--Cch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHH
Confidence 3 3334444444333321 233 334444433322 22467777777777664333234455566777888999999
Q ss_pred HHHHHH--------HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCCHH----HHHHHHHHHHHcC
Q 007695 451 ALNLLL--------ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL--GEAPPFK----IQVSLCDMYARAG 516 (592)
Q Consensus 451 A~~l~~--------~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~----~~~~Li~~~~~~g 516 (592)
|..++. .+.+.+..| .+...++..+.+.++.+.|..++...... ...+... ++.-+...-.++|
T Consensus 395 A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G 472 (652)
T KOG2376|consen 395 ALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHG 472 (652)
T ss_pred HHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcC
Confidence 999998 454444444 55666777788888877777777766532 0111222 3333444456789
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 007695 517 IEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHG 561 (592)
Q Consensus 517 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~ 561 (592)
+.++|..+++++... .+++.++...++.+|++. +.+.|..+-+
T Consensus 473 ~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 473 NEEEASSLLEELVKF-NPNDTDLLVQLVTAYARL-DPEKAESLSK 515 (652)
T ss_pred chHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhc-CHHHHHHHhh
Confidence 999999999999987 466888889999999876 4456655544
No 110
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.14 E-value=0.00086 Score=75.76 Aligned_cols=239 Identities=12% Similarity=0.087 Sum_probs=147.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 007695 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIV-TSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332 (592)
Q Consensus 254 ~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ 332 (592)
+.+...+..|+..+...+++++|.++.+...+. .|+.. .|-.+...+.+.++...+..+ .
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~ 88 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------N 88 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------h
Confidence 346667889999999999999999999977665 34433 333344466666665554444 3
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 007695 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGD 412 (592)
Q Consensus 333 li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~ 412 (592)
++.......++.-+..+...|...+ -+...+..+..+|-+.|+.+++..+++++.+.. +-|..+.|.+...|... +
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-h
Confidence 3333334444544444444555432 355688888889999999999999999998887 66788889999988888 9
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007695 413 PDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492 (592)
Q Consensus 413 ~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~ 492 (592)
+++|..++.+.... |...+++..+..+|..+.... |+ +++.-.++.+.
T Consensus 165 L~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~--~~---------------d~d~f~~i~~k 212 (906)
T PRK14720 165 KEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN--SD---------------DFDFFLRIERK 212 (906)
T ss_pred HHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC--cc---------------cchHHHHHHHH
Confidence 99998888877663 445556666666666665532 22 11222222222
Q ss_pred HHhc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 007695 493 ISEL-GEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLL 548 (592)
Q Consensus 493 m~~~-g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~ 548 (592)
+... +..--..++..+...|....+++++..+++.+.+.... |.....-++.+|.
T Consensus 213 i~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 213 VLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 2222 22223445555555566666666666666666554222 3333444444443
No 111
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.12 E-value=0.00059 Score=64.40 Aligned_cols=119 Identities=12% Similarity=0.081 Sum_probs=83.2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhCCC--HHHH
Q 007695 305 AGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF-AQCGD--VRGA 381 (592)
Q Consensus 305 ~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~-~~~g~--~~~A 381 (592)
.++.+++...++...+.. +.|...|..+...|...|+++.|...|++...... -+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG-ENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 555566666666666554 56677777777777777777777777777776542 2566666666653 55565 4777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 007695 382 GQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426 (592)
Q Consensus 382 ~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~ 426 (592)
.+++++..+.+ +.+..++..+...+.+.|++++|...|+++.+.
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 77777777765 456677777777777777777777777777764
No 112
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.10 E-value=0.00075 Score=63.69 Aligned_cols=157 Identities=15% Similarity=0.124 Sum_probs=112.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC
Q 007695 298 LVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGD 377 (592)
Q Consensus 298 Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~ 377 (592)
-+..|...|+++.+....+.+.. |. . .+...++.+++...++...... +.|...|..+...|...|+
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~----~~-~-------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLAD----PL-H-------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhC----cc-c-------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCC
Confidence 34567777887776555433321 11 0 1112556677777777777654 4478888888899999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHHcCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007695 378 VRGAGQITNIMRIEEFQPTLESCTLLVEA-YGQAGD--PDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454 (592)
Q Consensus 378 ~~~A~~~~~~m~~~g~~~~~~~~~~Li~~-~~~~g~--~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l 454 (592)
+++|...|+...... +.+...+..+..+ |...|+ .++|..++++..+..+. +..++..+...+.+.|++++|+..
T Consensus 89 ~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~ 166 (198)
T PRK10370 89 YDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIEL 166 (198)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999888876 5577888888876 467677 58999999988886554 667777788888889999999999
Q ss_pred HHHHHHCCCCCCHHHH
Q 007695 455 LLELEKDGFEPGPATY 470 (592)
Q Consensus 455 ~~~m~~~g~~p~~~ty 470 (592)
|+.+.+.. +|+..-+
T Consensus 167 ~~~aL~l~-~~~~~r~ 181 (198)
T PRK10370 167 WQKVLDLN-SPRVNRT 181 (198)
T ss_pred HHHHHhhC-CCCccHH
Confidence 99887753 4454443
No 113
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.09 E-value=0.0015 Score=73.86 Aligned_cols=238 Identities=15% Similarity=0.074 Sum_probs=161.6
Q ss_pred CCHhhHHHHHHHH-HhhCHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007695 220 PSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVL 298 (592)
Q Consensus 220 p~~~t~~~lL~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~L 298 (592)
.+...|..|+..+ ..+..+.+.+..+..+...+-.+.. |-.+...+.+.++++.+..+ .+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~--yy~~G~l~~q~~~~~~~~lv-----------------~~ 89 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISA--LYISGILSLSRRPLNDSNLL-----------------NL 89 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceeh--HHHHHHHHHhhcchhhhhhh-----------------hh
Confidence 3566688999988 7788888998888766543333333 33444477777776555444 34
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH
Q 007695 299 VHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378 (592)
Q Consensus 299 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~ 378 (592)
+.......++.....++..|... .-+..++..+..+|-+.|+.++|..+++++++.. +-|+.+.|.+...|+.. ++
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hH
Confidence 44444555554555555556654 3355688899999999999999999999999987 44889999999999999 99
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007695 379 RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLEL 458 (592)
Q Consensus 379 ~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m 458 (592)
++|.+++...... |...+++..+..+|.++.... |+... .-..+.+.+
T Consensus 166 ~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~--~~d~d---------------~f~~i~~ki 213 (906)
T PRK14720 166 EKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN--SDDFD---------------FFLRIERKV 213 (906)
T ss_pred HHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC--cccch---------------HHHHHHHHH
Confidence 9999998887754 666778888888888888743 22221 112223333
Q ss_pred HHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 007695 459 EKD-GFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYA 513 (592)
Q Consensus 459 ~~~-g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~ 513 (592)
... |..--..++-.+-..|...++++++..+++.+.+.... |.....-++.+|.
T Consensus 214 ~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 214 LGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 222 22333455556666777777888888888888776555 5666666666665
No 114
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=0.0019 Score=61.50 Aligned_cols=170 Identities=18% Similarity=0.147 Sum_probs=95.5
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 007695 349 LVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGH 428 (592)
Q Consensus 349 l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~ 428 (592)
+.+.+.......+......-...|+..+++++|++...... +..+...=...+.+..+.+-|...+++|.+-
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i-- 166 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI-- 166 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--
Confidence 33444443333333444444555667777777776665522 3333333344455666677777777777662
Q ss_pred CCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHH
Q 007695 429 KPDDRCTASMIAAYGK----KNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKI 504 (592)
Q Consensus 429 ~pd~~t~~~li~a~~~----~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~ 504 (592)
-+..|.+.+..++.+ .+.+..|.-+|++|.+ ...|+..+.+-...++...+++++|..+++........ ++.+
T Consensus 167 -ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~-k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpet 243 (299)
T KOG3081|consen 167 -DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE-KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPET 243 (299)
T ss_pred -chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc-ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHH
Confidence 245555555555543 2456667777777644 24566677777776777777777777777777666554 5555
Q ss_pred HHHHHHHHHHcCCHHH-HHHHHHHHH
Q 007695 505 QVSLCDMYARAGIEKK-ALQALGFLE 529 (592)
Q Consensus 505 ~~~Li~~~~~~g~~~~-A~~~~~~m~ 529 (592)
...++.+-...|...+ ..+.+.++.
T Consensus 244 L~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 244 LANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 5555555545554433 333444443
No 115
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.05 E-value=0.00044 Score=61.68 Aligned_cols=89 Identities=9% Similarity=-0.049 Sum_probs=35.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH
Q 007695 299 VHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378 (592)
Q Consensus 299 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~ 378 (592)
...+...|++++|...|+...... +.+..+|..+..++...|++++|...|+.....+ +.+..++..+..++...|++
T Consensus 31 g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~~ 108 (144)
T PRK15359 31 GYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGEP 108 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCH
Confidence 333344444444444444443332 2233344444444444444444444444444322 12333344444444444444
Q ss_pred HHHHHHHHHHH
Q 007695 379 RGAGQITNIMR 389 (592)
Q Consensus 379 ~~A~~~~~~m~ 389 (592)
++|...|....
T Consensus 109 ~eAi~~~~~Al 119 (144)
T PRK15359 109 GLAREAFQTAI 119 (144)
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 116
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.04 E-value=0.0021 Score=68.77 Aligned_cols=193 Identities=15% Similarity=0.172 Sum_probs=98.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH
Q 007695 299 VHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378 (592)
Q Consensus 299 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~ 378 (592)
+.+....+.+.+|+.+++.+..+. .-..-|..+..-|...|+++.|.++|.+. + .++-.|.+|.+.|+|
T Consensus 739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---~------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---D------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---c------hhHHHHHHHhccccH
Confidence 444455566666666666665432 12223445556666666666666666543 1 344456666666666
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007695 379 RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLEL 458 (592)
Q Consensus 379 ~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m 458 (592)
.+|.++-.+.. |-......|-+-..-+-++|.+.+|.++|-.+.. |+. .|..|-+.|..+..+++..+-
T Consensus 808 ~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~~-----aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 808 EDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PDK-----AIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----chH-----HHHHHHhhCcchHHHHHHHHh
Confidence 66666554433 2233344455555555566666666655544322 332 345555666666555555432
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 007695 459 EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQAL 525 (592)
Q Consensus 459 ~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~ 525 (592)
.-. .-..|...+..-|...|++..|..-|-+.- -|.+-+++|...+.+++|.++-
T Consensus 877 h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 877 HGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred Chh---hhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHH
Confidence 111 112334444455555666666655443322 2344455555555555555543
No 117
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.03 E-value=0.002 Score=61.43 Aligned_cols=255 Identities=17% Similarity=0.105 Sum_probs=161.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH
Q 007695 299 VHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378 (592)
Q Consensus 299 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~ 378 (592)
++-+.-.|++..++..-...... +-+...-.-+-++|...|++.....- ... |-.|....+..+......-++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~e---I~~-~~~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVISE---IKE-GKATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHcccccccccc---ccc-ccCChHHHHHHHHHHhhCcchh
Confidence 45555567787777665554432 23445555667788888876544322 222 2233344444444444444444
Q ss_pred HHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007695 379 RGAG-QITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLE 457 (592)
Q Consensus 379 ~~A~-~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~ 457 (592)
+.-. ++.+.+.......+......-...|+..|++++|++...... +......=+..+.+..+++-|.+.++.
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433 344444444334444444555667888999999988887622 333333345566778888999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 007695 458 LEKDGFEPGPATYTVLVDWLGR----LQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKE 533 (592)
Q Consensus 458 m~~~g~~p~~~ty~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~ 533 (592)
|.+- -+..|.+.|..++.+ .+.+.+|..+|++|.++ ..|+..+.+-...++...|++++|..+++....+.
T Consensus 163 mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd- 237 (299)
T KOG3081|consen 163 MQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD- 237 (299)
T ss_pred HHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-
Confidence 9762 356777777777754 35588899999999764 56788888888888999999999999999888874
Q ss_pred CCCHHHHHHHHHHHHhCCCHHH-HHHHHHHHHHCCCCCCH
Q 007695 534 QMGPDDFERIINGLLAGGFLQD-AQRVHGLMEAQGFAASE 572 (592)
Q Consensus 534 ~~~~~~~~~li~a~~~~g~~~~-A~~l~~~m~~~g~~pd~ 572 (592)
.-++.+...+|.+-...|...+ ..+.+.+++.. .|+.
T Consensus 238 ~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~--~p~h 275 (299)
T KOG3081|consen 238 AKDPETLANLIVLALHLGKDAEVTERNLSQLKLS--HPEH 275 (299)
T ss_pred CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc--CCcc
Confidence 3457776556655555555544 44556666544 4444
No 118
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.01 E-value=0.00088 Score=63.75 Aligned_cols=159 Identities=15% Similarity=0.028 Sum_probs=91.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 007695 261 SKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNA 340 (592)
Q Consensus 261 ~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~ 340 (592)
..+-..+.-.|+-+....+....... .+-|....+.++....+.|++..|...|.+..... ++|..+|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 33444444555555555555443322 12244455556666666666666666666665543 55666666666666666
Q ss_pred CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 007695 341 GQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNF 420 (592)
Q Consensus 341 g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf 420 (592)
|+.++|..-|.+..+... -++..++.+.-.|.-.|+.+.|..++......+ .-|...-..+.......|+++.|..+-
T Consensus 148 Gr~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 666666666666665422 244555566666666666666666666665554 335555556666666666666666655
Q ss_pred HHH
Q 007695 421 DYM 423 (592)
Q Consensus 421 ~~m 423 (592)
..-
T Consensus 226 ~~e 228 (257)
T COG5010 226 VQE 228 (257)
T ss_pred ccc
Confidence 443
No 119
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.00 E-value=0.002 Score=61.34 Aligned_cols=56 Identities=13% Similarity=-0.012 Sum_probs=21.6
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 007695 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMR 389 (592)
Q Consensus 333 li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~ 389 (592)
.+....+.|++..|...+++.... -++|..+|+.+.-+|.+.|+.+.|..-|.+..
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl 161 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRFDEARRAYRQAL 161 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccChhHHHHHHHHHH
Confidence 333333444444444444333332 12233344444444444444444443333333
No 120
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.97 E-value=0.03 Score=61.83 Aligned_cols=75 Identities=23% Similarity=0.297 Sum_probs=39.0
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchH
Q 007695 268 AKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKL 345 (592)
Q Consensus 268 ~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~ 345 (592)
.+.|+.++|..+++.....+.. |..|...+-.+|...++.++|..+|+..... -|+......+..+|.+.+++.+
T Consensus 54 ~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~ 128 (932)
T KOG2053|consen 54 FRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKK 128 (932)
T ss_pred HHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555554444333 5555555555555555555555555555543 3444455555555555554443
No 121
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.97 E-value=0.0041 Score=69.55 Aligned_cols=182 Identities=12% Similarity=0.076 Sum_probs=136.0
Q ss_pred CCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 007695 324 QPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLL 403 (592)
Q Consensus 324 ~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L 403 (592)
..++..+-.|.....+.|.+++|..+++...+.. +-+......+...+.+.+++++|...+++..... +-+....+.+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence 5568889999999999999999999999998853 2256677888899999999999999999999876 5667888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 007695 404 VEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLI 483 (592)
Q Consensus 404 i~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~ 483 (592)
..++.+.|++++|..+|++....+. -+..++...-.++-..|+.++|...|+...+.. .|....|+.++. ++
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~~------~~ 232 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRLV------DL 232 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHHH------HH
Confidence 9999999999999999999998433 246788888889999999999999999987652 355566665542 33
Q ss_pred HHHHHHHHHHHhc----CCCCCHHHHHHHHHHHHHc
Q 007695 484 NEAEQLLGKISEL----GEAPPFKIQVSLCDMYARA 515 (592)
Q Consensus 484 ~~A~~l~~~m~~~----g~~p~~~~~~~Li~~~~~~ 515 (592)
..-..+++++.-. |......+....|.-|.+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 233 NADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred HHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 4444556655432 2222333444455555443
No 122
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.95 E-value=0.026 Score=55.95 Aligned_cols=343 Identities=11% Similarity=0.015 Sum_probs=179.3
Q ss_pred ccCCchhHHHHHHhhc---CCCHhhHHHHHHHH-HhhCHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007695 203 KEEDPSPLLAEWKELL---QPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAER 278 (592)
Q Consensus 203 ~~g~~~~A~~~~~~~~---~p~~~t~~~lL~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~~ 278 (592)
+.|++++|+..+.-+. .++...|-.|--+. -.+...++...... .+.++..-..|.+...+.++-.+-..
T Consensus 69 hLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~k------a~k~pL~~RLlfhlahklndEk~~~~ 142 (557)
T KOG3785|consen 69 HLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEK------APKTPLCIRLLFHLAHKLNDEKRILT 142 (557)
T ss_pred hhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhh------CCCChHHHHHHHHHHHHhCcHHHHHH
Confidence 7888888888876652 33333333222221 22333333332221 23344444555666667777777666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHHcCCchHHHHHHHHHHHCC
Q 007695 279 ILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI-MAYVNAGQPKLGMSLVDMMITSG 357 (592)
Q Consensus 279 l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li-~a~~~~g~~~~A~~l~~~m~~~g 357 (592)
+.+.+... ..---+|....-..-.+.+|.++|...+.. .|+-...|..+ -+|.+..-++-+.+++.-.+..
T Consensus 143 fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q- 214 (557)
T KOG3785|consen 143 FHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ- 214 (557)
T ss_pred HHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-
Confidence 66665442 222334555555555678888998888865 45666666544 4566777777788887777664
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC--------------------------CC-----HHHHHHHHHH
Q 007695 358 IERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ--------------------------PT-----LESCTLLVEA 406 (592)
Q Consensus 358 ~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~--------------------------~~-----~~~~~~Li~~ 406 (592)
++-++...|.......+.=+-..|..-.+++...+-. |. ..+--.|+-.
T Consensus 215 ~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iY 294 (557)
T KOG3785|consen 215 FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIY 294 (557)
T ss_pred CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheee
Confidence 3334555555555555443333444444444433210 00 0111223344
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHh----cCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHc
Q 007695 407 YGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAA-YGK----KNLLDKALNLLLELEKDGFEPGP-ATYTVLVDWLGRL 480 (592)
Q Consensus 407 ~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a-~~~----~g~~~~A~~l~~~m~~~g~~p~~-~ty~~li~~~~~~ 480 (592)
|.+.+++.+|..+.+++.- ..|-....-.++.+ +.+ .....-|.+.|+-.-..+..-|. .---++..++.-.
T Consensus 295 yL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~ 372 (557)
T KOG3785|consen 295 YLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLS 372 (557)
T ss_pred ecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHH
Confidence 5566666666666555432 12222222111111 111 11233344444433333322221 1122344444445
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHhCCCHHHHHHH
Q 007695 481 QLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFE-RIINGLLAGGFLQDAQRV 559 (592)
Q Consensus 481 g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~-~li~a~~~~g~~~~A~~l 559 (592)
.++++++..++.+...-.. |-...-.+..+++..|++.+|.++|-++....+. +..+|- .|.++|.+.++.+-|+.+
T Consensus 373 ~qFddVl~YlnSi~sYF~N-dD~Fn~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~ 450 (557)
T KOG3785|consen 373 FQFDDVLTYLNSIESYFTN-DDDFNLNLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDM 450 (557)
T ss_pred HHHHHHHHHHHHHHHHhcC-cchhhhHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHH
Confidence 5667777666666554333 3333335677888888888888888776544322 445564 456778888888888777
Q ss_pred HHHH
Q 007695 560 HGLM 563 (592)
Q Consensus 560 ~~~m 563 (592)
+-++
T Consensus 451 ~lk~ 454 (557)
T KOG3785|consen 451 MLKT 454 (557)
T ss_pred HHhc
Confidence 6555
No 123
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.94 E-value=0.0078 Score=65.47 Aligned_cols=316 Identities=13% Similarity=0.105 Sum_probs=171.7
Q ss_pred HHHHHc--cc-ccCCchhHHHHHHhhcCCCHhhHHHHHHHHH-hhC----------HHHH--HHHHHHHhhhCCCCCCHH
Q 007695 195 TDKILS--LE-KEEDPSPLLAEWKELLQPSRIDWINLLDRLR-EQN----------TQLY--FKVAELVLSEESFQTNVR 258 (592)
Q Consensus 195 ~~~l~~--~~-~~g~~~~A~~~~~~~~~p~~~t~~~lL~~~~-~~~----------~~~~--~~~~~~~~~~~~~~p~~~ 258 (592)
..+++. +| -.|+.+.|.+-.+.+ .+...|..+-..|. ..+ +..+ ...+++.. ..++ .
T Consensus 729 Rkaml~FSfyvtiG~MD~AfksI~~I--kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~----q~~~-e 801 (1416)
T KOG3617|consen 729 RKAMLDFSFYVTIGSMDAAFKSIQFI--KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQ----QNGE-E 801 (1416)
T ss_pred HHhhhceeEEEEeccHHHHHHHHHHH--hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHH----hCCc-c
Confidence 344554 56 889999997665543 23455666666552 221 1111 11122211 1232 2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007695 259 DYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYV 338 (592)
Q Consensus 259 ~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~ 338 (592)
+-..+.......|.+++|+.+|.+.+. |..|=..|...|.+++|.++-+.=.+. .=..||.....-+-
T Consensus 802 ~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRi---HLr~Tyy~yA~~Le 869 (1416)
T KOG3617|consen 802 DEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRI---HLRNTYYNYAKYLE 869 (1416)
T ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccce---ehhhhHHHHHHHHH
Confidence 223334445678899999999988776 445556777889999998876543221 12246666666666
Q ss_pred HcCCchHHHHHHHHHHHC----------C---------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Q 007695 339 NAGQPKLGMSLVDMMITS----------G---------IERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLES 399 (592)
Q Consensus 339 ~~g~~~~A~~l~~~m~~~----------g---------~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 399 (592)
..++.+.|++.|++.... . -.-|...|.-....+-..|+++.|+.+|...+ -
T Consensus 870 ar~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~---------D 940 (1416)
T KOG3617|consen 870 ARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK---------D 940 (1416)
T ss_pred hhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh---------h
Confidence 777788887777653111 0 01122233333334444566666666665443 2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 007695 400 CTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479 (592)
Q Consensus 400 ~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~ 479 (592)
|-+++...|-.|+.++|-++-++- -|......+...|-..|++.+|..+|.+.. +|...|+.|-.
T Consensus 941 ~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAIRlcKE 1005 (1416)
T KOG3617|consen 941 YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLCKE 1005 (1416)
T ss_pred hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHHHh
Confidence 344555556666777666665543 244555567778888888888888887653 33344443322
Q ss_pred cCC---------------HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH-H-------HHHH--cCCC
Q 007695 480 LQL---------------INEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQAL-G-------FLEA--KKEQ 534 (592)
Q Consensus 480 ~g~---------------~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~-~-------~m~~--~~~~ 534 (592)
.+- .-.|.+.|++. |.. ...-+..|-+.|.+.+|+++- + ++.. ....
T Consensus 1006 nd~~d~L~nlal~s~~~d~v~aArYyEe~---g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~ 1077 (1416)
T KOG3617|consen 1006 NDMKDRLANLALMSGGSDLVSAARYYEEL---GGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAG 1077 (1416)
T ss_pred cCHHHHHHHHHhhcCchhHHHHHHHHHHc---chh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCC
Confidence 221 12222222221 111 112344677888888887762 1 1222 2233
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 007695 535 MGPDDFERIINGLLAGGFLQDAQRVHG 561 (592)
Q Consensus 535 ~~~~~~~~li~a~~~~g~~~~A~~l~~ 561 (592)
-|+...+.-..-++...++++|..++-
T Consensus 1078 sDp~ll~RcadFF~~~~qyekAV~lL~ 1104 (1416)
T KOG3617|consen 1078 SDPKLLRRCADFFENNQQYEKAVNLLC 1104 (1416)
T ss_pred CCHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 456666666666666667777666553
No 124
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.93 E-value=0.0056 Score=68.50 Aligned_cols=183 Identities=11% Similarity=0.082 Sum_probs=144.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHH
Q 007695 288 IVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367 (592)
Q Consensus 288 ~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 367 (592)
+..++..+-.|.......|.+++|..+++...+.. +-+......+...+.+.+++++|+..+++....... +......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHH
Confidence 45578899999999999999999999999999873 445667888999999999999999999999987533 7788888
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 007695 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNL 447 (592)
Q Consensus 368 Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~ 447 (592)
+..++.+.|++++|..+|+++...+ +-+..++..+...+-..|+.++|...|+...+. ..|....|+..+ ++
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~------~~ 231 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRL------VD 231 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHH------HH
Confidence 9999999999999999999999843 455899999999999999999999999999874 234556666544 33
Q ss_pred HHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHHc
Q 007695 448 LDKALNLLLELEKD----GFEPGPATYTVLVDWLGRL 480 (592)
Q Consensus 448 ~~~A~~l~~~m~~~----g~~p~~~ty~~li~~~~~~ 480 (592)
...-..+++++.-. |...........|.-|.+.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 232 LNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred HHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 44556667766543 2233344455566556554
No 125
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.92 E-value=0.0011 Score=59.07 Aligned_cols=88 Identities=13% Similarity=-0.126 Sum_probs=35.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHH
Q 007695 441 AYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKK 520 (592)
Q Consensus 441 a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~ 520 (592)
++.+.|++++|...|+...... +.+...+..+..++...|++++|...|+........ +...+..+..++...|++++
T Consensus 33 ~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~-~~~a~~~lg~~l~~~g~~~e 110 (144)
T PRK15359 33 ASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS-HPEPVYQTGVCLKMMGEPGL 110 (144)
T ss_pred HHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHcCCHHH
Confidence 3344444444444444433321 122333334444444444444444444444433222 33344444444444444444
Q ss_pred HHHHHHHHHH
Q 007695 521 ALQALGFLEA 530 (592)
Q Consensus 521 A~~~~~~m~~ 530 (592)
|...|+....
T Consensus 111 Ai~~~~~Al~ 120 (144)
T PRK15359 111 AREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 126
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.85 E-value=2.8e-05 Score=50.44 Aligned_cols=33 Identities=21% Similarity=0.445 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC
Q 007695 539 DFERIINGLLAGGFLQDAQRVHGLMEAQGFAAS 571 (592)
Q Consensus 539 ~~~~li~a~~~~g~~~~A~~l~~~m~~~g~~pd 571 (592)
+|+.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 589999999999999999999999999999998
No 127
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.83 E-value=0.0074 Score=65.63 Aligned_cols=151 Identities=13% Similarity=0.117 Sum_probs=95.9
Q ss_pred cCCCHhhHHHHHHHH---HhhCHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-C------
Q 007695 218 LQPSRIDWINLLDRL---REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNEN-G------ 287 (592)
Q Consensus 218 ~~p~~~t~~~lL~~~---~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~-g------ 287 (592)
.+=|..|-.++|.-- ..|+++.+.+.++-. .+..+|..+.+.|.+.++++-|.--+..|... |
T Consensus 722 e~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~I-------kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~ 794 (1416)
T KOG3617|consen 722 ENCDESTRKAMLDFSFYVTIGSMDAAFKSIQFI-------KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRR 794 (1416)
T ss_pred cccCHHHHHhhhceeEEEEeccHHHHHHHHHHH-------hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHH
Confidence 445666666676631 567777777766543 23347888999999988888887777666432 1
Q ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHH
Q 007695 288 --IVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIY 365 (592)
Q Consensus 288 --~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 365 (592)
-.|+ .+-.-..-.....|.+++|..+|.+-++ |..|-..|...|.+++|.++-+.--... =..||
T Consensus 795 a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Ty 861 (1416)
T KOG3617|consen 795 AQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTY 861 (1416)
T ss_pred HHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhH
Confidence 1122 2222233344567888888888888774 3445556667888888888765432222 23466
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHH
Q 007695 366 LALLRSFAQCGDVRGAGQITNIM 388 (592)
Q Consensus 366 ~~Ll~~~~~~g~~~~A~~~~~~m 388 (592)
.....-+-..++.+.|++.|++.
T Consensus 862 y~yA~~Lear~Di~~AleyyEK~ 884 (1416)
T KOG3617|consen 862 YNYAKYLEARRDIEAALEYYEKA 884 (1416)
T ss_pred HHHHHHHHhhccHHHHHHHHHhc
Confidence 66666666677777777777653
No 128
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.83 E-value=0.00085 Score=58.87 Aligned_cols=60 Identities=15% Similarity=0.131 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007695 364 IYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMI 424 (592)
Q Consensus 364 t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~ 424 (592)
.+..+..++.+.|++++|..+++.....+ +.+...+..+...|...|++++|...|+...
T Consensus 53 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 112 (135)
T TIGR02552 53 YWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLALGEPESALKALDLAI 112 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33333333333333333333333333322 2233333333333334444444444443333
No 129
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.82 E-value=0.0011 Score=58.12 Aligned_cols=97 Identities=14% Similarity=0.001 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007695 362 EEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAA 441 (592)
Q Consensus 362 ~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a 441 (592)
......+...+...|++++|...++.+...+ +.+...+..+...|.+.|++++|...|+.....++ .+...+..+..+
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~ 94 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP-DDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CChHHHHHHHHH
Confidence 3445566666677777777777777766654 44666777777777777777777777777666433 244555556666
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 007695 442 YGKKNLLDKALNLLLELEK 460 (592)
Q Consensus 442 ~~~~g~~~~A~~l~~~m~~ 460 (592)
|...|++++|...|+...+
T Consensus 95 ~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 95 LLALGEPESALKALDLAIE 113 (135)
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 7777777777777776665
No 130
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.81 E-value=0.022 Score=54.16 Aligned_cols=168 Identities=14% Similarity=0.197 Sum_probs=92.8
Q ss_pred CCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 007695 253 FQTNVRD-YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVL-VHMYSKAGNLDRAKEAFESLRSHGFQPDKKVY 330 (592)
Q Consensus 253 ~~p~~~~-y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~L-i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~ 330 (592)
..++..+ |..++-+....|+.+.|...++.+..+ + |...-...| .-.+-..|++++|.++|+.+.+.+ +-|..+|
T Consensus 47 ~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~ 123 (289)
T KOG3060|consen 47 LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIR 123 (289)
T ss_pred cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHH
Confidence 3455544 555555666666777777777666655 2 222211111 112234566667777777666654 4455555
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 007695 331 NSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQA 410 (592)
Q Consensus 331 ~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~ 410 (592)
---+...-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-.++++.-.. |.+...+..+...+.-.
T Consensus 124 KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-P~n~l~f~rlae~~Yt~ 201 (289)
T KOG3060|consen 124 KRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-PFNPLYFQRLAEVLYTQ 201 (289)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHH
Confidence 55555555556666666666665554 44466666666666666666666666666666553 33444444454444433
Q ss_pred C---CHHHHHHHHHHHHH
Q 007695 411 G---DPDQARSNFDYMIR 425 (592)
Q Consensus 411 g---~~~~A~~lf~~m~~ 425 (592)
| ++.-|.+.|.+..+
T Consensus 202 gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 202 GGAENLELARKYYERALK 219 (289)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 3 34455555555555
No 131
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.80 E-value=0.034 Score=57.60 Aligned_cols=183 Identities=16% Similarity=0.079 Sum_probs=113.6
Q ss_pred CCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 007695 324 QPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLL 403 (592)
Q Consensus 324 ~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L 403 (592)
.|+...+...+.+......-..+..++.+..+. .-...-|...+. +...|+++.|+..++.+.... +-|...+...
T Consensus 271 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A~~-~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~ 346 (484)
T COG4783 271 SPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRALQ-TYLAGQYDEALKLLQPLIAAQ-PDNPYYLELA 346 (484)
T ss_pred CccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHHHH-HHHhcccchHHHHHHHHHHhC-CCCHHHHHHH
Confidence 345555666666554433333333333222221 112233433333 445677888888888877653 4556666677
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 007695 404 VEAYGQAGDPDQARSNFDYMIRLGHKPD-DRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQL 482 (592)
Q Consensus 404 i~~~~~~g~~~~A~~lf~~m~~~g~~pd-~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~ 482 (592)
...+.+.++..+|.+.++.+... .|+ ....-.+-.+|.+.|++.+|+.+++..... .+-|+..|..|.++|...|+
T Consensus 347 ~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~ 423 (484)
T COG4783 347 GDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGN 423 (484)
T ss_pred HHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCc
Confidence 77788888888888888887774 344 344445667778888888888888777554 35567778888888888877
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 007695 483 INEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAK 531 (592)
Q Consensus 483 ~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~ 531 (592)
..++..- ....|...|+++.|...+....+.
T Consensus 424 ~~~a~~A------------------~AE~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 424 RAEALLA------------------RAEGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred hHHHHHH------------------HHHHHHhCCCHHHHHHHHHHHHHh
Confidence 6555433 334456677777777777776665
No 132
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.77 E-value=4.6e-05 Score=49.42 Aligned_cols=33 Identities=42% Similarity=0.662 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 007695 259 DYSKLIDAHAKENCLEDAERILKKMNENGIVPD 291 (592)
Q Consensus 259 ~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd 291 (592)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 466666666666666666666666666666665
No 133
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.76 E-value=0.015 Score=62.53 Aligned_cols=219 Identities=17% Similarity=0.158 Sum_probs=150.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH
Q 007695 299 VHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378 (592)
Q Consensus 299 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~ 378 (592)
...+...|+++.|...|-+.. ...-.+.+......+.+|+.+++.+.+.... .--|..+...|+..|++
T Consensus 713 g~hl~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~df 781 (1636)
T KOG3616|consen 713 GDHLEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDF 781 (1636)
T ss_pred hHHHHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhH
Confidence 344455677777776664433 2234455667788999999999988776432 33477788899999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007695 379 RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLEL 458 (592)
Q Consensus 379 ~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m 458 (592)
+.|.++|.+. ..++--|.+|.+.|.|+.|.++-.+.. |+......|-+-..-.-+.|++.+|.++|-..
T Consensus 782 e~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti 850 (1636)
T KOG3616|consen 782 EIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITI 850 (1636)
T ss_pred HHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEc
Confidence 9999988653 234567889999999999988876553 45545566666666677889999998888654
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 007695 459 EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD 538 (592)
Q Consensus 459 ~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 538 (592)
. .|+. .|..|-+.|..+...++..+-.... -..|...+..-|...|+...|..-|-+..+
T Consensus 851 ~----~p~~-----aiqmydk~~~~ddmirlv~k~h~d~---l~dt~~~f~~e~e~~g~lkaae~~flea~d-------- 910 (1636)
T KOG3616|consen 851 G----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGDH---LHDTHKHFAKELEAEGDLKAAEEHFLEAGD-------- 910 (1636)
T ss_pred c----CchH-----HHHHHHhhCcchHHHHHHHHhChhh---hhHHHHHHHHHHHhccChhHHHHHHHhhhh--------
Confidence 2 3553 4677888899888888877654221 235666777788888888888877654322
Q ss_pred HHHHHHHHHHhCCCHHHHHHHH
Q 007695 539 DFERIINGLLAGGFLQDAQRVH 560 (592)
Q Consensus 539 ~~~~li~a~~~~g~~~~A~~l~ 560 (592)
|.+-++.|...+-|++|.++-
T Consensus 911 -~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 911 -FKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred -HHHHHHHhhhhhhHHHHHHHH
Confidence 455555666666666655443
No 134
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.75 E-value=4.2e-05 Score=49.42 Aligned_cols=32 Identities=31% Similarity=0.536 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 007695 259 DYSKLIDAHAKENCLEDAERILKKMNENGIVP 290 (592)
Q Consensus 259 ~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p 290 (592)
+||.+|.+|++.|+++.|.++|+.|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 55555666666666666666666655555554
No 135
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.71 E-value=0.094 Score=55.03 Aligned_cols=151 Identities=7% Similarity=0.001 Sum_probs=114.7
Q ss_pred HHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Q 007695 413 PDQARSNFDYMIRL-GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEP-GPATYTVLVDWLGRLQLINEAEQLL 490 (592)
Q Consensus 413 ~~~A~~lf~~m~~~-g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~ 490 (592)
.+....+++++... .+.| +.+|...+..-.+..-+..|..+|.+..+.+..+ ++..+++++..+| .++..-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHH
Confidence 55556666666653 3343 3466677888888888999999999999887777 6777888887666 46788899999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 007695 491 GKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG--PDDFERIINGLLAGGFLQDAQRVHGLMEAQ 566 (592)
Q Consensus 491 ~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~a~~~~g~~~~A~~l~~~m~~~ 566 (592)
+--.+.-.. +...-...++-+...++-..|..+|++....+..++ ...|..+|.-=...|+...++++-+++...
T Consensus 425 eLGLkkf~d-~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 425 ELGLKKFGD-SPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHHHHhcCC-ChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 876654222 445556778888899999999999999988744443 457999999999999999999988877643
No 136
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.70 E-value=0.0018 Score=67.15 Aligned_cols=125 Identities=18% Similarity=0.146 Sum_probs=93.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007695 295 STVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ 374 (592)
Q Consensus 295 ~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~ 374 (592)
...|+..+...++++.|..+|+++.+. .|+. ...++..+...++..+|.+++++.+... +-+...+......|.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~--~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER--DPEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc--CCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 345666667778888888888888876 3553 4457777777788888888888887653 3366677777777888
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007695 375 CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR 425 (592)
Q Consensus 375 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~ 425 (592)
.++++.|..+.+++.... +-+..+|..|..+|.+.|+++.|+..++.+.-
T Consensus 247 k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred cCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 888888888888888764 44566888888888888888888888877654
No 137
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.70 E-value=0.017 Score=59.87 Aligned_cols=182 Identities=14% Similarity=0.035 Sum_probs=131.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007695 290 PDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369 (592)
Q Consensus 290 pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll 369 (592)
|+...+...+.+......-..+..++.+..+. -......-..-.+...|+++.|+..++.++..- +-|..-.....
T Consensus 272 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~---~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~ 347 (484)
T COG4783 272 PDFQLARARIRAKYEALPNQQAADLLAKRSKR---GGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAG 347 (484)
T ss_pred ccHHHHHHHHHHHhccccccchHHHHHHHhCc---cchHHHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 45555555555544443333333333333321 122233333444557899999999999988753 33566666777
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 007695 370 RSFAQCGDVRGAGQITNIMRIEEFQPT-LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLL 448 (592)
Q Consensus 370 ~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~ 448 (592)
..+.+.++..+|.+.++.+.... |+ ....-.+..+|.+.|++.+|..+++......+ -|...|..+..+|...|+.
T Consensus 348 ~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p-~dp~~w~~LAqay~~~g~~ 424 (484)
T COG4783 348 DILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDP-EDPNGWDLLAQAYAELGNR 424 (484)
T ss_pred HHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC-CCchHHHHHHHHHHHhCch
Confidence 88999999999999999998774 54 67777889999999999999999999888644 4888999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007695 449 DKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496 (592)
Q Consensus 449 ~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 496 (592)
.++..-..+. +...|+++.|..++....+.
T Consensus 425 ~~a~~A~AE~------------------~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 425 AEALLARAEG------------------YALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHHHH------------------HHhCCCHHHHHHHHHHHHHh
Confidence 8887666554 56678888888888887765
No 138
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.69 E-value=7.6e-05 Score=48.18 Aligned_cols=33 Identities=15% Similarity=0.265 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC
Q 007695 538 DDFERIINGLLAGGFLQDAQRVHGLMEAQGFAA 570 (592)
Q Consensus 538 ~~~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p 570 (592)
.+|+.++.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 468888999999999999999999998888887
No 139
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.67 E-value=0.00038 Score=72.48 Aligned_cols=123 Identities=16% Similarity=0.147 Sum_probs=99.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 007695 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNEN--GIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVY 330 (592)
Q Consensus 253 ~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~--g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~ 330 (592)
.+.+......+++.+....+++.+..++.+.... ....-..|.+++|+.|.+.|..+.++.++..=...|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3556667778888888888888888888888765 22222345568999999999999999999888888999999999
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC
Q 007695 331 NSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375 (592)
Q Consensus 331 ~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~ 375 (592)
|.||..+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999988888877777778888777777766
No 140
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.63 E-value=0.0031 Score=56.28 Aligned_cols=124 Identities=18% Similarity=0.076 Sum_probs=69.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCH--HHHHHHH
Q 007695 435 TASMIAAYGKKNLLDKALNLLLELEKDGFEPG---PATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPF--KIQVSLC 509 (592)
Q Consensus 435 ~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~---~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~~~~~Li 509 (592)
|..++..+ ..++...+...++.+.+.. +.+ ......+...+...|++++|...|+.+......|+. .....|.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 33344343 3566666666666665542 111 223333445666667777777777776665432221 2333456
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 007695 510 DMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGL 562 (592)
Q Consensus 510 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~ 562 (592)
..+...|++++|+..++..... ...+..+......|...|++++|...|+.
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6666777777777777554322 22344555666777777777777777765
No 141
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.63 E-value=0.017 Score=64.31 Aligned_cols=165 Identities=10% Similarity=0.034 Sum_probs=91.1
Q ss_pred CCcchHHHHHHHHccc-ccCCchhHHHHHHhhcCC---CHhhHHHHHHHHH-hhCHHHHHHHHHHHhhhCCCCCCHHHHH
Q 007695 187 ITGKCKLITDKILSLE-KEEDPSPLLAEWKELLQP---SRIDWINLLDRLR-EQNTQLYFKVAELVLSEESFQTNVRDYS 261 (592)
Q Consensus 187 ~~~~~~~~~~~l~~~~-~~g~~~~A~~~~~~~~~p---~~~t~~~lL~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~y~ 261 (592)
++++-......|-.+| ...+...|.+-|+.+.+- +...+......++ ..+++.+....-..-+......-...|.
T Consensus 487 ld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~ 566 (1238)
T KOG1127|consen 487 LDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWV 566 (1238)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhh
Confidence 3444444445555555 344777777777776433 3334444444443 3345544444221111111111111233
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH--HHHHH
Q 007695 262 KLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI--MAYVN 339 (592)
Q Consensus 262 ~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li--~a~~~ 339 (592)
.+.-.|.+.++...|..-|+...+..++ |...|..|..+|..+|.+..|.++|++.... .|+. +|.... -.-+.
T Consensus 567 ~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s-~y~~fk~A~~ecd 642 (1238)
T KOG1127|consen 567 QRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS-KYGRFKEAVMECD 642 (1238)
T ss_pred hccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh-HHHHHHHHHHHHH
Confidence 3444566677777777777777765433 6777888888888888888888888777653 3332 232222 22345
Q ss_pred cCCchHHHHHHHHHHH
Q 007695 340 AGQPKLGMSLVDMMIT 355 (592)
Q Consensus 340 ~g~~~~A~~l~~~m~~ 355 (592)
.|.+.+|+..+.....
T Consensus 643 ~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 643 NGKYKEALDALGLIIY 658 (1238)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 6777777777766543
No 142
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.60 E-value=0.065 Score=51.02 Aligned_cols=152 Identities=17% Similarity=0.102 Sum_probs=77.5
Q ss_pred CCHHHHHHHHHHHHHC---C-CCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchH
Q 007695 271 NCLEDAERILKKMNEN---G-IVPDIVT-STVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKL 345 (592)
Q Consensus 271 g~~~~A~~l~~~m~~~---g-~~pd~~~-~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~ 345 (592)
.+.++.++++..+... | ..++..+ |..++-+....|+.+.|...++.+..+= +-+..+-..-..-+-..|++++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhh
Confidence 4556666666665432 2 3344332 3344445555666666666666655441 2222222222222333456666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007695 346 GMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR 425 (592)
Q Consensus 346 A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~ 425 (592)
|.++|+.+++.+ +.|.++|..=+...-..|+--+|.+-+....+.- ..|...|.-+...|...|++++|.-.++++.-
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F-~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF-MNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 666666666554 3355555544444444555555555555554442 44556666666666666666666655555554
No 143
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.59 E-value=0.0022 Score=66.60 Aligned_cols=126 Identities=15% Similarity=0.206 Sum_probs=105.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 007695 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVN 339 (592)
Q Consensus 260 y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~ 339 (592)
...|+..+...++++.|..+|+++.+.. |+. ...+++.+...++-.+|.+++++..+.. +.+....+.-...|.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 3456666777899999999999999873 554 4458888888999999999999998653 5577777888888999
Q ss_pred cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 007695 340 AGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE 391 (592)
Q Consensus 340 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~ 391 (592)
.++++.|+.+.+++.... +-+-.+|..|..+|.+.|+++.|+..++.+.-.
T Consensus 247 k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred cCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 999999999999999853 335669999999999999999999999988743
No 144
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.56 E-value=0.0047 Score=55.10 Aligned_cols=85 Identities=20% Similarity=0.173 Sum_probs=36.7
Q ss_pred HHHHHcCCchHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 007695 335 MAYVNAGQPKLGMSLVDMMITSGIERS--EEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGD 412 (592)
Q Consensus 335 ~a~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~ 412 (592)
..+...|++++|...|+........++ ......|...+...|++++|...++..... ......+......|.+.|+
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~ 133 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGD 133 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCC
Confidence 444445555555555555544331111 112223344444555555555555432211 1122334444455555555
Q ss_pred HHHHHHHHH
Q 007695 413 PDQARSNFD 421 (592)
Q Consensus 413 ~~~A~~lf~ 421 (592)
.++|...|+
T Consensus 134 ~~~A~~~y~ 142 (145)
T PF09976_consen 134 YDEARAAYQ 142 (145)
T ss_pred HHHHHHHHH
Confidence 555555544
No 145
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.56 E-value=0.0011 Score=54.75 Aligned_cols=78 Identities=14% Similarity=0.303 Sum_probs=49.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHhCCCCCCHHHHH
Q 007695 261 SKLIDAHAKENCLEDAERILKKMNENGI-VPDIVTSTVLVHMYSKAG--------NLDRAKEAFESLRSHGFQPDKKVYN 331 (592)
Q Consensus 261 ~~Li~~~~~~g~~~~A~~l~~~m~~~g~-~pd~~~~~~Li~~~~~~g--------~~~~A~~~~~~m~~~g~~pd~~t~~ 331 (592)
...|..|...+++.....+|+.+++.|+ .|++.+|+.++...++.. ++-..+.+|+.|...+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3445556666777777777777777777 677777777777666532 2334555666666666666666666
Q ss_pred HHHHHHH
Q 007695 332 SMIMAYV 338 (592)
Q Consensus 332 ~li~a~~ 338 (592)
.++..+.
T Consensus 109 ivl~~Ll 115 (120)
T PF08579_consen 109 IVLGSLL 115 (120)
T ss_pred HHHHHHH
Confidence 6665554
No 146
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.52 E-value=0.0015 Score=68.18 Aligned_cols=124 Identities=11% Similarity=-0.053 Sum_probs=94.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Q 007695 322 GFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS--GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLES 399 (592)
Q Consensus 322 g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 399 (592)
+.+.+......+++.+....+.+.+..++.+.... ....-..|..++++.|...|..+.+..+++.=...|+=||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 44567777778888887777888888888877764 2323345666888888888888888888888888888888888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 007695 400 CTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKK 445 (592)
Q Consensus 400 ~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~ 445 (592)
+|.||..+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888887776666667777666666554
No 147
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.47 E-value=0.0027 Score=52.57 Aligned_cols=78 Identities=14% Similarity=0.222 Sum_probs=47.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCCHHHHHH
Q 007695 402 LLVEAYGQAGDPDQARSNFDYMIRLGH-KPDDRCTASMIAAYGKKN--------LLDKALNLLLELEKDGFEPGPATYTV 472 (592)
Q Consensus 402 ~Li~~~~~~g~~~~A~~lf~~m~~~g~-~pd~~t~~~li~a~~~~g--------~~~~A~~l~~~m~~~g~~p~~~ty~~ 472 (592)
..|..+...+++.....+|+.++..|+ .|+..+|+.++.+.++.. .+-+.+.+|+.|...+++|+..||+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 344445555666666666666666666 666666666666555432 23445666677776677777777777
Q ss_pred HHHHHHH
Q 007695 473 LVDWLGR 479 (592)
Q Consensus 473 li~~~~~ 479 (592)
++..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 7665543
No 148
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.23 Score=52.19 Aligned_cols=356 Identities=12% Similarity=0.013 Sum_probs=216.3
Q ss_pred HHHHHHhhcccccCCCCCCCCcchHHH-HHHHHcccccCCchhHHHHHHhh--cCCC-HhhHHHHHHHH-HhhCHHHHHH
Q 007695 168 VAEKIHERGEMILPEEPKPITGKCKLI-TDKILSLEKEEDPSPLLAEWKEL--LQPS-RIDWINLLDRL-REQNTQLYFK 242 (592)
Q Consensus 168 ~~~~~~ea~~~f~~~~~~~~~~~~~~~-~~~l~~~~~~g~~~~A~~~~~~~--~~p~-~~t~~~lL~~~-~~~~~~~~~~ 242 (592)
..|+...|+..| -.++.++|....+ .++..++.+.|++.+|++--.+- +.|+ .-.|+..-.++ ..++.+++..
T Consensus 14 s~~d~~~ai~~~--t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ 91 (539)
T KOG0548|consen 14 SSGDFETAIRLF--TEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAIL 91 (539)
T ss_pred ccccHHHHHHHH--HHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHH
Confidence 367888899988 3345555543333 34444455899999998766544 5565 45577776666 7788999998
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHH---HHHHHHHHHCC---CCCCHHHHHHHHHHHHHc----------C
Q 007695 243 VAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA---ERILKKMNENG---IVPDIVTSTVLVHMYSKA----------G 306 (592)
Q Consensus 243 ~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A---~~l~~~m~~~g---~~pd~~~~~~Li~~~~~~----------g 306 (592)
.+..-+... +.|...++.|..++......... -.++..+...- .......|..++..+-+. .
T Consensus 92 ay~~GL~~d--~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~ 169 (539)
T KOG0548|consen 92 AYSEGLEKD--PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDP 169 (539)
T ss_pred HHHHHhhcC--CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccH
Confidence 887766432 44666688888777221111000 01111111100 000111233333332221 0
Q ss_pred CHHHHHHHHHH-----HHhCC-------CCC----------------------CHHHHHHHHHHHHHcCCchHHHHHHHH
Q 007695 307 NLDRAKEAFES-----LRSHG-------FQP----------------------DKKVYNSMIMAYVNAGQPKLGMSLVDM 352 (592)
Q Consensus 307 ~~~~A~~~~~~-----m~~~g-------~~p----------------------d~~t~~~li~a~~~~g~~~~A~~l~~~ 352 (592)
.+..|.-.+.. +...| ..| -..-...+.++.-+..++..|++.+..
T Consensus 170 r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~ 249 (539)
T KOG0548|consen 170 RLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAK 249 (539)
T ss_pred HHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 11111111110 00001 111 012345677777788888899999988
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007695 353 MITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLE-------SCTLLVEAYGQAGDPDQARSNFDYMIR 425 (592)
Q Consensus 353 m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-------~~~~Li~~~~~~g~~~~A~~lf~~m~~ 425 (592)
..+.. -+..-++....+|...|.+..+........+.|- -... .+..+..+|.+.++++.|...|.+...
T Consensus 250 a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-e~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLt 326 (539)
T KOG0548|consen 250 ALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR-ELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALT 326 (539)
T ss_pred HHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH-HHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhh
Confidence 88765 3555566777788888888887777766665541 1222 223344567777889999999888666
Q ss_pred cCCCCCHHHHH-------------------------HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 007695 426 LGHKPDDRCTA-------------------------SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRL 480 (592)
Q Consensus 426 ~g~~pd~~t~~-------------------------~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~ 480 (592)
....||..+-. .-...+.+.|++..|+..|.++++.. +-|...|....-+|.+.
T Consensus 327 e~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL 405 (539)
T KOG0548|consen 327 EHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKL 405 (539)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHH
Confidence 44444443211 11345677899999999999998876 55678999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 007695 481 QLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKK 532 (592)
Q Consensus 481 g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~ 532 (592)
|.+..|+.-.+..++.... ....|.-=..++.-..++++|.+.|++..+.+
T Consensus 406 ~~~~~aL~Da~~~ieL~p~-~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 406 GEYPEALKDAKKCIELDPN-FIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred hhHHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999988888876432 34455555555666678999999999887763
No 149
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.40 E-value=0.35 Score=53.89 Aligned_cols=226 Identities=14% Similarity=0.070 Sum_probs=158.0
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCch
Q 007695 267 HAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMY--SKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPK 344 (592)
Q Consensus 267 ~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~--~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~ 344 (592)
....+++..|.+...++.+. .||.. |...+.++ .+.|+.++|..+++.....+.. |..|...+-.+|...++.+
T Consensus 19 ~ld~~qfkkal~~~~kllkk--~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKK--HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHH--CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhh
Confidence 34567889999988887765 35554 34444444 5789999999999888766534 8889999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC----------HH
Q 007695 345 LGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGD----------PD 414 (592)
Q Consensus 345 ~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~----------~~ 414 (592)
+|..+|+..... .|+......+..+|.+-+.+.+-.++--++.+. ++-+...+=++++.+.+.-. ..
T Consensus 95 ~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~ 171 (932)
T KOG2053|consen 95 EAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLA 171 (932)
T ss_pred HHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHH
Confidence 999999999864 567888889999999998887655555444443 24455666666666655321 33
Q ss_pred HHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007695 415 QARSNFDYMIRLG-HKPDDRCTASMIAAYGKKNLLDKALNLLLE-LEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492 (592)
Q Consensus 415 ~A~~lf~~m~~~g-~~pd~~t~~~li~a~~~~g~~~~A~~l~~~-m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~ 492 (592)
-|.+.++.+.+.+ ..-+..-.-.-.......|.+++|+.++.. ..+.-..-+...-+--+..+...+++.+..++-.+
T Consensus 172 LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~ 251 (932)
T KOG2053|consen 172 LAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSR 251 (932)
T ss_pred HHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 5666777776643 221222222223345667889999999943 33333334455556677888889999999999999
Q ss_pred HHhcCCC
Q 007695 493 ISELGEA 499 (592)
Q Consensus 493 m~~~g~~ 499 (592)
+...+..
T Consensus 252 Ll~k~~D 258 (932)
T KOG2053|consen 252 LLEKGND 258 (932)
T ss_pred HHHhCCc
Confidence 9888755
No 150
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.39 E-value=0.039 Score=61.64 Aligned_cols=181 Identities=13% Similarity=0.106 Sum_probs=121.1
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007695 378 VRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLE 457 (592)
Q Consensus 378 ~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~ 457 (592)
...++..|-+..+.. +.-...|..|...|+...+...|...|++..+.... |..........|+...+++.|..+.-.
T Consensus 474 ~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 555665555555443 222567888888888888888888888888775432 566777888888888899888887332
Q ss_pred HHHCCCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 007695 458 LEKDGFEPGPATYT--VLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQM 535 (592)
Q Consensus 458 m~~~g~~p~~~ty~--~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~ 535 (592)
.-+.. +.....++ ..--.|...++...+..-|+...+..+. |...|..+..+|.++|++..|.++|.+.... .|
T Consensus 552 ~~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP 627 (1238)
T KOG1127|consen 552 AAQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL--RP 627 (1238)
T ss_pred Hhhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--Cc
Confidence 22211 11111122 2333456678888888888888877666 7888889999999999999999999887653 22
Q ss_pred CHHHHHHH--HHHHHhCCCHHHHHHHHHHHHH
Q 007695 536 GPDDFERI--INGLLAGGFLQDAQRVHGLMEA 565 (592)
Q Consensus 536 ~~~~~~~l--i~a~~~~g~~~~A~~l~~~m~~ 565 (592)
+ ..|... ....+..|.+.+|+..++....
T Consensus 628 ~-s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 628 L-SKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred H-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 2 223332 2334567888888888877653
No 151
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.38 E-value=0.22 Score=51.27 Aligned_cols=351 Identities=14% Similarity=0.141 Sum_probs=184.4
Q ss_pred ccCCchhHHHHHHhhcC---CC------HhhHHHHHHHHHhhCHHHHHHHHHHHhhhCCCCCCHHHHHHHHH--HHHHcC
Q 007695 203 KEEDPSPLLAEWKELLQ---PS------RIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLID--AHAKEN 271 (592)
Q Consensus 203 ~~g~~~~A~~~~~~~~~---p~------~~t~~~lL~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~--~~~~~g 271 (592)
+.+++.+|.++|.+..+ .+ .+.-+.+|+++-..+.+.....+....+..|-.+ |-.|.. .+.+.+
T Consensus 18 kq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~----~l~LF~~L~~Y~~k 93 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSA----YLPLFKALVAYKQK 93 (549)
T ss_pred HHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCch----HHHHHHHHHHHHhh
Confidence 67777888877776621 11 2334566667766666655555554444433222 223322 235667
Q ss_pred CHHHHHHHHHHHHHC--CCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCCHHHHHHH
Q 007695 272 CLEDAERILKKMNEN--GIVP------------DIVTSTVLVHMYSKAGNLDRAKEAFESLRSH----GFQPDKKVYNSM 333 (592)
Q Consensus 272 ~~~~A~~l~~~m~~~--g~~p------------d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~----g~~pd~~t~~~l 333 (592)
.+++|.+.+..-..+ +..| |...=+..++++...|.+.+++.+++++... ....+..+||.+
T Consensus 94 ~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~ 173 (549)
T PF07079_consen 94 EYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRA 173 (549)
T ss_pred hHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHH
Confidence 777777777665554 2222 1222255667777788888887777776533 233677777764
Q ss_pred HHHHHHc--------CCc-------hHHHHHHHHHHHC------CCCCCHHHHH--------------------------
Q 007695 334 IMAYVNA--------GQP-------KLGMSLVDMMITS------GIERSEEIYL-------------------------- 366 (592)
Q Consensus 334 i~a~~~~--------g~~-------~~A~~l~~~m~~~------g~~p~~~t~~-------------------------- 366 (592)
+-.+.+. ... +-+.-+.++|... .+.|-...+.
T Consensus 174 vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~ 253 (549)
T PF07079_consen 174 VLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWEN 253 (549)
T ss_pred HHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHh
Confidence 4443321 111 1111111222111 1112111111
Q ss_pred ------------HHHHHHHhCCCHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 007695 367 ------------ALLRSFAQCGDVRGAGQITNIMRIEEFQ----PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430 (592)
Q Consensus 367 ------------~Ll~~~~~~g~~~~A~~~~~~m~~~g~~----~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~p 430 (592)
.+...+.+ +.+++..+.+.+....+. .=..+|..++....+.++...|.+.+.-+....+..
T Consensus 254 ~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~ 331 (549)
T PF07079_consen 254 FYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRI 331 (549)
T ss_pred hccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcc
Confidence 11122222 333443333333222111 113456666677777777777766666554421110
Q ss_pred -------------------CHHHHHH------------------------HHH---HHHhcCC-HHHHHHHHHHHHHCCC
Q 007695 431 -------------------DDRCTAS------------------------MIA---AYGKKNL-LDKALNLLLELEKDGF 463 (592)
Q Consensus 431 -------------------d~~t~~~------------------------li~---a~~~~g~-~~~A~~l~~~m~~~g~ 463 (592)
|...|+. ++. -+-+.|. -++|+++++...+.
T Consensus 332 svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~f-- 409 (549)
T PF07079_consen 332 SVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQF-- 409 (549)
T ss_pred hhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh--
Confidence 1111111 111 1122333 66777777777663
Q ss_pred CCC-HHH----HHHHHHHHHH---cCCHHHHHHHHHHHHhcCCCC----CHHHHHHHHHH--HHHcCCHHHHHHHHHHHH
Q 007695 464 EPG-PAT----YTVLVDWLGR---LQLINEAEQLLGKISELGEAP----PFKIQVSLCDM--YARAGIEKKALQALGFLE 529 (592)
Q Consensus 464 ~p~-~~t----y~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p----~~~~~~~Li~~--~~~~g~~~~A~~~~~~m~ 529 (592)
.+. ... +..+=..|.. ...+.+-..+-+-+.+.|+.| +...-|.|.++ +..+|++.++.-.-..+.
T Consensus 410 t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~ 489 (549)
T PF07079_consen 410 TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLT 489 (549)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 232 222 2222233332 233455555555566777765 34455556554 457899999987766665
Q ss_pred HcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 007695 530 AKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLM 563 (592)
Q Consensus 530 ~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m 563 (592)
+ +.|++.+|..+.-++....++++|..++..+
T Consensus 490 ~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 490 K--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred H--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 5 6789999999999999999999999999876
No 152
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.37 E-value=0.0038 Score=49.52 Aligned_cols=94 Identities=18% Similarity=0.168 Sum_probs=55.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 007695 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVN 339 (592)
Q Consensus 260 y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~ 339 (592)
+..+...+...|++++|...|+...+.. +.+...+..+..++...+++++|.+.|+...... +.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 3445555666666677776666665542 1233555556666666666666666666665543 3333455666666666
Q ss_pred cCCchHHHHHHHHHHH
Q 007695 340 AGQPKLGMSLVDMMIT 355 (592)
Q Consensus 340 ~g~~~~A~~l~~~m~~ 355 (592)
.|+++.|...+.....
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 6666666666655543
No 153
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.30 E-value=0.0086 Score=50.78 Aligned_cols=98 Identities=13% Similarity=0.041 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHH
Q 007695 259 DYSKLIDAHAKENCLEDAERILKKMNENGIV--PDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHG--FQPDKKVYNSMI 334 (592)
Q Consensus 259 ~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~--pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g--~~pd~~t~~~li 334 (592)
++..+...+.+.|++++|.+.|..+...... .....+..+..++.+.|+++.|...|+.+.... .+....++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 4455556666677777777777776654211 113345556666677777777777777666431 011134555666
Q ss_pred HHHHHcCCchHHHHHHHHHHHC
Q 007695 335 MAYVNAGQPKLGMSLVDMMITS 356 (592)
Q Consensus 335 ~a~~~~g~~~~A~~l~~~m~~~ 356 (592)
.++.+.|+.++|...++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 6666666777777666666665
No 154
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.29 E-value=0.0049 Score=48.87 Aligned_cols=16 Identities=25% Similarity=0.362 Sum_probs=5.8
Q ss_pred HHHHHcCCHHHHHHHH
Q 007695 405 EAYGQAGDPDQARSNF 420 (592)
Q Consensus 405 ~~~~~~g~~~~A~~lf 420 (592)
..+...|+++.|...+
T Consensus 76 ~~~~~~~~~~~a~~~~ 91 (100)
T cd00189 76 LAYYKLGKYEEALEAY 91 (100)
T ss_pred HHHHHHHhHHHHHHHH
Confidence 3333333333333333
No 155
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.28 E-value=0.00036 Score=43.79 Aligned_cols=30 Identities=23% Similarity=0.453 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCC
Q 007695 539 DFERIINGLLAGGFLQDAQRVHGLMEAQGF 568 (592)
Q Consensus 539 ~~~~li~a~~~~g~~~~A~~l~~~m~~~g~ 568 (592)
+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 578888888888888888888888887764
No 156
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.28 E-value=0.00028 Score=44.32 Aligned_cols=29 Identities=31% Similarity=0.524 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 007695 259 DYSKLIDAHAKENCLEDAERILKKMNENG 287 (592)
Q Consensus 259 ~y~~Li~~~~~~g~~~~A~~l~~~m~~~g 287 (592)
+||.+|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
No 157
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.24 E-value=0.012 Score=49.79 Aligned_cols=93 Identities=17% Similarity=0.124 Sum_probs=39.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCC--CCHHHHHHHHH
Q 007695 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPD----KKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIE--RSEEIYLALLR 370 (592)
Q Consensus 297 ~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd----~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~--p~~~t~~~Ll~ 370 (592)
.+...+.+.|++++|...|..+.... |+ ...+..+..++.+.|+++.|...|+.+...... .....+..+..
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 34444444555555555555444321 11 223333444444444445555444444432111 11233344444
Q ss_pred HHHhCCCHHHHHHHHHHHHHc
Q 007695 371 SFAQCGDVRGAGQITNIMRIE 391 (592)
Q Consensus 371 ~~~~~g~~~~A~~~~~~m~~~ 391 (592)
++.+.|+.++|...++++...
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 444444444444444444443
No 158
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.19 E-value=0.0088 Score=55.76 Aligned_cols=104 Identities=20% Similarity=0.298 Sum_probs=51.3
Q ss_pred CCHHHHHHHHHHHHHc-----CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Q 007695 325 PDKKVYNSMIMAYVNA-----GQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLES 399 (592)
Q Consensus 325 pd~~t~~~li~a~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 399 (592)
.|..+|..++..|.+. |..+-....+..|.+-|+.-|..+|+.||+.+=+ |.+- |....
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~n~f 108 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PRNFF 108 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------cccHH
Confidence 4555555555555432 4455555556666666666666666666655543 2111 10000
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 007695 400 CTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNL 447 (592)
Q Consensus 400 ~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~ 447 (592)
..... - --.+-+-|++++++|...|+.||..++..+++.+++.+.
T Consensus 109 Q~~F~-h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 109 QAEFM-H--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHhc-c--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 00000 0 011334455666666666666666666666666655544
No 159
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.15 E-value=0.031 Score=51.40 Aligned_cols=91 Identities=12% Similarity=0.084 Sum_probs=68.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007695 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPD--IVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333 (592)
Q Consensus 256 ~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l 333 (592)
....|..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+.+..... +.+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 444577788888889999999999999887543332 4678888899999999999999999888753 3356677777
Q ss_pred HHHHHHcCCchHHH
Q 007695 334 IMAYVNAGQPKLGM 347 (592)
Q Consensus 334 i~a~~~~g~~~~A~ 347 (592)
...|...|+...+.
T Consensus 113 g~~~~~~g~~~~a~ 126 (172)
T PRK02603 113 AVIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHHcCChHhHh
Confidence 77887777754443
No 160
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.12 E-value=0.0034 Score=58.43 Aligned_cols=105 Identities=21% Similarity=0.273 Sum_probs=76.9
Q ss_pred CCCHHHHHHHHHHHHh-----CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 007695 359 ERSEEIYLALLRSFAQ-----CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433 (592)
Q Consensus 359 ~p~~~t~~~Ll~~~~~-----~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ 433 (592)
.-|..+|..++..|.+ .|..+-....+..|.+.|+..|..+|+.|++.+=+ |.+- -..+|+.+-
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F--------- 112 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEF--------- 112 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHh---------
Confidence 3477888888888765 46788888888888888988999999888887654 2211 111222211
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 007695 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQL 482 (592)
Q Consensus 434 t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~ 482 (592)
.- .-.+-+-|++++++|...|+-||..|+..+++.+++.+.
T Consensus 113 ------~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 113 ------MH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ------cc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 11 123456789999999999999999999999999988776
No 161
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.09 E-value=0.084 Score=52.85 Aligned_cols=93 Identities=16% Similarity=0.099 Sum_probs=52.8
Q ss_pred HHHHHHhc-CCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----CCHH-H
Q 007695 438 MIAAYGKK-NLLDKALNLLLELEKD----GFEPG--PATYTVLVDWLGRLQLINEAEQLLGKISELGEA-----PPFK-I 504 (592)
Q Consensus 438 li~a~~~~-g~~~~A~~l~~~m~~~----g~~p~--~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~-----p~~~-~ 504 (592)
+...|... |++++|+..|.+..+. + .+. ..++..+...+.+.|++++|..+|+++...... .+.. .
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~ 198 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEY 198 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHH
Confidence 33455555 7788888777775432 2 111 245566677777888888888888877654322 1121 2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 007695 505 QVSLCDMYARAGIEKKALQALGFLEAK 531 (592)
Q Consensus 505 ~~~Li~~~~~~g~~~~A~~~~~~m~~~ 531 (592)
+...+-++...|+...|.+.|+.....
T Consensus 199 ~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 199 FLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 233344566677788888877777654
No 162
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.02 E-value=0.15 Score=49.78 Aligned_cols=189 Identities=13% Similarity=0.086 Sum_probs=93.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007695 262 KLIDAHAKENCLEDAERILKKMNENGIVPDIVTS---TVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYV 338 (592)
Q Consensus 262 ~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~---~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~ 338 (592)
.....+.+.|++++|.+.|+.+...-..+ .... -.+..+|.+.+++++|...|++..+.--.....-|...+.+.+
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHh
Confidence 34445566788888888888887753222 2222 3455677778888888888888775521111223333333332
Q ss_pred HcCCchHHHHHHHHHHHCC-CCCC-------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 007695 339 NAGQPKLGMSLVDMMITSG-IERS-------EEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQA 410 (592)
Q Consensus 339 ~~g~~~~A~~l~~~m~~~g-~~p~-------~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~ 410 (592)
....- ...+....... ...| ..++..+++-|-.+.-..+|...+..+... =...--.+...|.+.
T Consensus 116 ~~~~~---~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~----la~~e~~ia~~Y~~~ 188 (243)
T PRK10866 116 NMALD---DSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDR----LAKYELSVAEYYTKR 188 (243)
T ss_pred hhhcc---hhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHc
Confidence 10000 00000000000 0000 012233333333344444555444444321 011112445567777
Q ss_pred CCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007695 411 GDPDQARSNFDYMIRL--GHKPDDRCTASMIAAYGKKNLLDKALNLLLEL 458 (592)
Q Consensus 411 g~~~~A~~lf~~m~~~--g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m 458 (592)
|.+..|..-|+.+..+ +..........++.+|...|..++|......+
T Consensus 189 ~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 189 GAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred CchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 7777777777777764 23334455566677777777777776666554
No 163
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.02 E-value=0.21 Score=48.76 Aligned_cols=183 Identities=16% Similarity=0.089 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 007695 362 EEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLES---CTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438 (592)
Q Consensus 362 ~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~---~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~l 438 (592)
...+-.....+...|++++|...|+.+.... +-+... .-.++.+|.+.++++.|...|++..+..+.-...-|...
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 3333334445566778888888887777653 222222 234567777888888888888887775443333344444
Q ss_pred HHHHHh--c---------------CC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 007695 439 IAAYGK--K---------------NL---LDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498 (592)
Q Consensus 439 i~a~~~--~---------------g~---~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~ 498 (592)
+.+.+. . .| ..+|+..|+.+++. -|+ ..-..+|...+..+...
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~-------------S~ya~~A~~rl~~l~~~-- 173 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPN-------------SQYTTDATKRLVFLKDR-- 173 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcC-------------ChhHHHHHHHHHHHHHH--
Confidence 444331 1 11 12344444444442 233 22344444444444321
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 007695 499 APPFKIQVSLCDMYARAGIEKKALQALGFLEAK--KEQMGPDDFERIINGLLAGGFLQDAQRVHGLME 564 (592)
Q Consensus 499 ~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~ 564 (592)
=...-..+...|.+.|.+..|..-++.+.+. +.+..+.....++.+|...|..++|.++...+.
T Consensus 174 --la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 --LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred --HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 0111225667789999999999999988874 122234566778899999999999988776654
No 164
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.01 E-value=0.098 Score=52.35 Aligned_cols=115 Identities=17% Similarity=0.228 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHc--CC-CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CCCH
Q 007695 399 SCTLLVEAYGQA-GDPDQARSNFDYMIRL--GH-KPD--DRCTASMIAAYGKKNLLDKALNLLLELEKDGF-----EPGP 467 (592)
Q Consensus 399 ~~~~Li~~~~~~-g~~~~A~~lf~~m~~~--g~-~pd--~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~-----~p~~ 467 (592)
++..+...|-.. |+++.|.+.|++.... .. .+. ..++..+...+.+.|++++|..+|++....-. +.+.
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 344455667677 8999999999877652 11 111 34566777889999999999999999876532 2223
Q ss_pred H-HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCC--HHHHHHHHHHHH
Q 007695 468 A-TYTVLVDWLGRLQLINEAEQLLGKISEL--GEAPP--FKIQVSLCDMYA 513 (592)
Q Consensus 468 ~-ty~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~--~~~~~~Li~~~~ 513 (592)
. .|...+-++...|++..|...+++.... ++..+ ..+...|+.+|-
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~ 246 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE 246 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH
Confidence 2 3444555777789999999999998754 23322 345666677664
No 165
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.00 E-value=0.018 Score=59.69 Aligned_cols=91 Identities=14% Similarity=-0.069 Sum_probs=65.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCH
Q 007695 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIE 518 (592)
Q Consensus 439 i~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~ 518 (592)
...+...|++++|+.+|.+.++.. +-+...|..+..+|...|++++|...++++...... +...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCH
Confidence 344566778888888888877643 234566777777778888888888888887776543 566777777778888888
Q ss_pred HHHHHHHHHHHHc
Q 007695 519 KKALQALGFLEAK 531 (592)
Q Consensus 519 ~~A~~~~~~m~~~ 531 (592)
++|...|++....
T Consensus 87 ~eA~~~~~~al~l 99 (356)
T PLN03088 87 QTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHHh
Confidence 8888888777764
No 166
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.99 E-value=0.51 Score=47.91 Aligned_cols=108 Identities=14% Similarity=0.037 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 007695 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512 (592)
Q Consensus 433 ~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~ 512 (592)
.+.+..|.-+...|+...|.++-.+. + -|+...|...+.+++..+++++..++-.. +-++.-|..++.+|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHH
Confidence 34555666777788887777776654 2 37888888888888888888887776432 11346678888888
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 007695 513 ARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVH 560 (592)
Q Consensus 513 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~ 560 (592)
.+.|+..+|..+...+. +..-+..|.+.|++.+|.+.-
T Consensus 248 ~~~~~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HHCCCHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHHH
Confidence 88888888888776521 345677888888888887653
No 167
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.96 E-value=0.002 Score=51.49 Aligned_cols=81 Identities=20% Similarity=0.152 Sum_probs=45.8
Q ss_pred cCCHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 007695 480 LQLINEAEQLLGKISELGEA-PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQR 558 (592)
Q Consensus 480 ~g~~~~A~~l~~~m~~~g~~-p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~ 558 (592)
.|+++.|..+++++.+.... ++...+..+..+|.+.|++++|..+++. ...+. .+......+..+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 45666677777766655432 2334444567777777777777777766 22111 123333344666777777777777
Q ss_pred HHHH
Q 007695 559 VHGL 562 (592)
Q Consensus 559 l~~~ 562 (592)
+|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7654
No 168
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.95 E-value=0.017 Score=57.73 Aligned_cols=129 Identities=12% Similarity=0.158 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007695 294 TSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVN-AGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372 (592)
Q Consensus 294 ~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~-~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~ 372 (592)
+|..+++..-+.+..+.|..+|.+..+.+ .-+..+|......-.. .++.+.|..+|+...+. +..+...+...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 34444444444444445555554444321 1112222222222111 23333345555444443 233444444444455
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007695 373 AQCGDVRGAGQITNIMRIEEFQPT---LESCTLLVEAYGQAGDPDQARSNFDYMIR 425 (592)
Q Consensus 373 ~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~Li~~~~~~g~~~~A~~lf~~m~~ 425 (592)
.+.++.+.|..+|+..... +.++ ...|...+..=.+.|+++.+..+.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555544432 1111 23555555555555666655555555554
No 169
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.94 E-value=0.024 Score=58.70 Aligned_cols=92 Identities=9% Similarity=0.010 Sum_probs=65.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH
Q 007695 299 VHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378 (592)
Q Consensus 299 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~ 378 (592)
...+...|++++|++.|++..+.. +.+...|..+..+|.+.|++++|+..+++.+... +.+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 445566777888888887777654 4456677777777777788888877777777653 22566677777777777777
Q ss_pred HHHHHHHHHHHHcC
Q 007695 379 RGAGQITNIMRIEE 392 (592)
Q Consensus 379 ~~A~~~~~~m~~~g 392 (592)
++|...|+.....+
T Consensus 87 ~eA~~~~~~al~l~ 100 (356)
T PLN03088 87 QTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHhC
Confidence 77777777777654
No 170
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.94 E-value=0.04 Score=50.62 Aligned_cols=62 Identities=13% Similarity=0.123 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCchHHHHHHHHHHH
Q 007695 294 TSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPD--KKVYNSMIMAYVNAGQPKLGMSLVDMMIT 355 (592)
Q Consensus 294 ~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~t~~~li~a~~~~g~~~~A~~l~~~m~~ 355 (592)
.+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+.+...
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE 100 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555555555555555555555543321111 23444444455555555555555554444
No 171
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.84 E-value=0.029 Score=49.91 Aligned_cols=92 Identities=7% Similarity=-0.021 Sum_probs=57.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 007695 262 KLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAG 341 (592)
Q Consensus 262 ~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g 341 (592)
.+...+...|++++|.++|+.+....+. +..-|..|.-++-..|++++|+..|....... +.|...+-.+..++...|
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcC
Confidence 4444455667777777777766664322 44445556666666677777777776666554 345666666666666677
Q ss_pred CchHHHHHHHHHHH
Q 007695 342 QPKLGMSLVDMMIT 355 (592)
Q Consensus 342 ~~~~A~~l~~~m~~ 355 (592)
+.+.|.+.|+..+.
T Consensus 118 ~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 118 NVCYAIKALKAVVR 131 (157)
T ss_pred CHHHHHHHHHHHHH
Confidence 77766666666554
No 172
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.83 E-value=0.028 Score=50.01 Aligned_cols=87 Identities=15% Similarity=0.006 Sum_probs=42.4
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHH
Q 007695 476 WLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQD 555 (592)
Q Consensus 476 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~ 555 (592)
-+...|++++|.++|+.+....+. +..-|..|..+|...|++.+|+..|......+ +-++..+..+..++...|+.+.
T Consensus 44 ~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~~~~ 121 (157)
T PRK15363 44 QLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDNVCY 121 (157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCCHHH
Confidence 344445555555555554443333 44444455555555555555555555544442 2244444445555555555555
Q ss_pred HHHHHHHHH
Q 007695 556 AQRVHGLME 564 (592)
Q Consensus 556 A~~l~~~m~ 564 (592)
|.+.|+..+
T Consensus 122 A~~aF~~Ai 130 (157)
T PRK15363 122 AIKALKAVV 130 (157)
T ss_pred HHHHHHHHH
Confidence 555555444
No 173
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.80 E-value=0.036 Score=55.42 Aligned_cols=129 Identities=13% Similarity=0.050 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007695 328 KVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ-CGDVRGAGQITNIMRIEEFQPTLESCTLLVEA 406 (592)
Q Consensus 328 ~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~-~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~ 406 (592)
.+|..+++..-+.+..+.|..+|.+.++.+ ..+..+|......-.+ .++.+.|.++|+...+. ++.+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 468888888888888889999998888543 3345555555555333 56677789999888866 36677888888888
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007695 407 YGQAGDPDQARSNFDYMIRLGHKPDD----RCTASMIAAYGKKNLLDKALNLLLELEK 460 (592)
Q Consensus 407 ~~~~g~~~~A~~lf~~m~~~g~~pd~----~t~~~li~a~~~~g~~~~A~~l~~~m~~ 460 (592)
+.+.++.+.|..+|+..... + |.. ..|...+.-=.+.|+.+.+..+.+++.+
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l-~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-L-PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-S-SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-c-CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88889999999999888764 2 333 4778788777888888888888888776
No 174
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.76 E-value=0.028 Score=51.42 Aligned_cols=61 Identities=11% Similarity=-0.056 Sum_probs=24.8
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 007695 330 YNSMIMAYVNAGQPKLGMSLVDMMITSGIER--SEEIYLALLRSFAQCGDVRGAGQITNIMRI 390 (592)
Q Consensus 330 ~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p--~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~ 390 (592)
|..+...+...|++++|+..|++.......+ ...++..+...|...|++++|...+.....
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3333344444444444444444443321111 112344444444444444444444444443
No 175
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.74 E-value=0.032 Score=51.06 Aligned_cols=81 Identities=12% Similarity=-0.016 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007695 257 VRDYSKLIDAHAKENCLEDAERILKKMNENGIVP--DIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334 (592)
Q Consensus 257 ~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p--d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li 334 (592)
...|..+...+...|++++|...|+........+ ...+|..+...|...|++++|...|+...... +....+++.+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 3445566666666677777777777766542222 12356666667777777777777776666542 22334444555
Q ss_pred HHHH
Q 007695 335 MAYV 338 (592)
Q Consensus 335 ~a~~ 338 (592)
..+.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 4444
No 176
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.73 E-value=0.022 Score=55.47 Aligned_cols=91 Identities=13% Similarity=0.028 Sum_probs=44.4
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 007695 478 GRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQ 557 (592)
Q Consensus 478 ~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~ 557 (592)
.+.+++.+|...|.+.+..... |...|..=..+|.+.|.++.|.+=.+.....+ +-...+|..|..+|...|++++|+
T Consensus 92 m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHHH
Confidence 3444555555555555554333 44444445555555555555555544444331 112334555555555555555555
Q ss_pred HHHHHHHHCCCCCCH
Q 007695 558 RVHGLMEAQGFAASE 572 (592)
Q Consensus 558 ~l~~~m~~~g~~pd~ 572 (592)
+.|++.++ +.|+.
T Consensus 170 ~aykKaLe--ldP~N 182 (304)
T KOG0553|consen 170 EAYKKALE--LDPDN 182 (304)
T ss_pred HHHHhhhc--cCCCc
Confidence 55555443 34544
No 177
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.71 E-value=0.094 Score=44.88 Aligned_cols=90 Identities=14% Similarity=0.104 Sum_probs=42.7
Q ss_pred HHHHHHcCCchHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHH
Q 007695 334 IMAYVNAGQPKLGMSLVDMMITSGIERS--EEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP---TLESCTLLVEAYG 408 (592)
Q Consensus 334 i~a~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~---~~~~~~~Li~~~~ 408 (592)
..++-..|+.++|+.+|++....|.... ...+..+.+.+...|++++|..+++...... +. +......+..++.
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHHH
Confidence 3444455555555555555555554332 2234444555555555555555555554431 11 1122222233445
Q ss_pred HcCCHHHHHHHHHHHH
Q 007695 409 QAGDPDQARSNFDYMI 424 (592)
Q Consensus 409 ~~g~~~~A~~lf~~m~ 424 (592)
..|+.++|...+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 5555555555554443
No 178
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.58 E-value=1 Score=45.68 Aligned_cols=108 Identities=21% Similarity=0.159 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007695 399 SCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLG 478 (592)
Q Consensus 399 ~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~ 478 (592)
+.+.-|.-+...|+...|.++-.+.. + ||..-|-..|.+++..++|++...+... +-.+.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk---v-~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK---V-PDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC---C-cHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 44445666777888888888766663 2 7888899999999999999887765432 123477888999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007695 479 RLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALG 526 (592)
Q Consensus 479 ~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~ 526 (592)
+.|+..+|..+..++ . +..-+.+|.++|++.+|.+.--
T Consensus 249 ~~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HCCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHHH
Confidence 999999988887762 1 2456778889999999877643
No 179
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.56 E-value=0.21 Score=54.31 Aligned_cols=61 Identities=23% Similarity=0.138 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007695 363 EIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR 425 (592)
Q Consensus 363 ~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~ 425 (592)
..|..+.-.+...|++++|...+++....+ |+...|..+...|...|+.++|.+.+++...
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 444444444444455555555555555443 3445555555555555555555555555444
No 180
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.29 Score=49.88 Aligned_cols=261 Identities=14% Similarity=0.007 Sum_probs=135.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CC-----CCCH--HHHHHHHHH
Q 007695 266 AHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSH--GF-----QPDK--KVYNSMIMA 336 (592)
Q Consensus 266 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~--g~-----~pd~--~t~~~li~a 336 (592)
.+.+..++..|+..+....+.+.. ++.-|..=...+...|++++|.--.+.-.+. |+ .++. .....+|.+
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A 136 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEA 136 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHH
Confidence 445556666777777766665433 3444555555555566666655444333321 10 1110 011122222
Q ss_pred HHHcCCc-----hHHHHHHHHHHHCCC-CCCHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 007695 337 YVNAGQP-----KLGMSLVDMMITSGI-ERSEEIYLAL-LRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQ 409 (592)
Q Consensus 337 ~~~~g~~-----~~A~~l~~~m~~~g~-~p~~~t~~~L-l~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~ 409 (592)
.....+. ..++..++....... +|...++..+ ..++.-.|++++|.++--...+.. ..+......-..++.-
T Consensus 137 ~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy 215 (486)
T KOG0550|consen 137 EEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYY 215 (486)
T ss_pred HHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchhHHHHhccccccc
Confidence 2111111 112222222222111 2333344333 244566778888887777766554 2333333222334445
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHH---HHHH----------HHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHH
Q 007695 410 AGDPDQARSNFDYMIRLGHKPDDRCT---ASMI----------AAYGKKNLLDKALNLLLELEKD---GFEPGPATYTVL 473 (592)
Q Consensus 410 ~g~~~~A~~lf~~m~~~g~~pd~~t~---~~li----------~a~~~~g~~~~A~~l~~~m~~~---g~~p~~~ty~~l 473 (592)
.++.+.|...|++....+ |+...- ..+. .-..+.|.+..|...|.+.+.. +..|+...|...
T Consensus 216 ~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nr 293 (486)
T KOG0550|consen 216 NDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNR 293 (486)
T ss_pred ccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHh
Confidence 677788888888776643 332211 1111 2235678888888888877653 456667777777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 007695 474 VDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAK 531 (592)
Q Consensus 474 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~ 531 (592)
..+..+.|++.+|..--++..+.... -...|..-..++...+++++|.+-++...+.
T Consensus 294 a~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 294 ALVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HhhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 77778888888888777776653211 1122233334555667777777777766553
No 181
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.53 E-value=0.0098 Score=45.06 Aligned_cols=63 Identities=25% Similarity=0.384 Sum_probs=39.6
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007695 268 AKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333 (592)
Q Consensus 268 ~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l 333 (592)
.+.|++++|.++|+.+...... +...+..+..+|.+.|++++|..+++.+... .|+...|..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence 3567777777777777665322 5666666777777777777777777777655 4554444333
No 182
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.35 E-value=0.36 Score=52.55 Aligned_cols=14 Identities=7% Similarity=-0.076 Sum_probs=6.5
Q ss_pred CCCHHHHHHHHHHH
Q 007695 324 QPDKKVYNSMIMAY 337 (592)
Q Consensus 324 ~pd~~t~~~li~a~ 337 (592)
+.|...|..++++.
T Consensus 334 ~~~~~Ay~~~lrg~ 347 (517)
T PRK10153 334 PHQGAALTLFYQAH 347 (517)
T ss_pred CCCHHHHHHHHHHH
Confidence 34444555444443
No 183
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.34 E-value=1.7 Score=47.24 Aligned_cols=304 Identities=14% Similarity=0.132 Sum_probs=155.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH----------HHHHcCCHHHHHHHHHHHHhCCC
Q 007695 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVH----------MYSKAGNLDRAKEAFESLRSHGF 323 (592)
Q Consensus 254 ~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~----------~~~~~g~~~~A~~~~~~m~~~g~ 323 (592)
.|.+..|..|.......-.++.|+..|-+.... |.+.....|-. .-+-.|.+++|.++|-+|.++.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh-
Confidence 577888988888888888888888888766442 22211111111 1122478889999888877542
Q ss_pred CCCHHHHHHHHHHHHHcCCchHHHHHHHH----------------HHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH--
Q 007695 324 QPDKKVYNSMIMAYVNAGQPKLGMSLVDM----------------MITSGIERSEEIYLALLRSFAQCGDVRGAGQIT-- 385 (592)
Q Consensus 324 ~pd~~t~~~li~a~~~~g~~~~A~~l~~~----------------m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~-- 385 (592)
..|..+.+.|++-.+.++++. |-+. ..+...|......|...|+.+.-.+.+
T Consensus 765 --------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~--fa~~~~We~A~~yY~~~~~~e~~~ecly~ 834 (1189)
T KOG2041|consen 765 --------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGET--FAEMMEWEEAAKYYSYCGDTENQIECLYR 834 (1189)
T ss_pred --------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhccchHhHHHHHHH
Confidence 223333344444333333322 1110 011222333344444444433222211
Q ss_pred ----HHHH--HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007695 386 ----NIMR--IEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELE 459 (592)
Q Consensus 386 ----~~m~--~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~ 459 (592)
..+. ...++-+....-.+..++.+.|.-++|.+.|-+--. | ...+.+|...+++.+|.++-++..
T Consensus 835 le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~LnQW~~avelaq~~~ 905 (1189)
T KOG2041|consen 835 LELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCVELNQWGEAVELAQRFQ 905 (1189)
T ss_pred HHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1111 112455666777788888888888888777654322 2 135667888888888887776542
Q ss_pred HCCCCCCHHHH--------------HHHHHHHHHcCCHHHHHHHHHHHHhcC---CCCCHH-----HHHHH-HHHH----
Q 007695 460 KDGFEPGPATY--------------TVLVDWLGRLQLINEAEQLLGKISELG---EAPPFK-----IQVSL-CDMY---- 512 (592)
Q Consensus 460 ~~g~~p~~~ty--------------~~li~~~~~~g~~~~A~~l~~~m~~~g---~~p~~~-----~~~~L-i~~~---- 512 (592)
- |...|. .--|..+.+.|+.-+|.+++.+|.+.. ..|-.. +..+| +.-+
T Consensus 906 l----~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~h~~~i 981 (1189)
T KOG2041|consen 906 L----PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVENHRQTI 981 (1189)
T ss_pred c----hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 222221 112334556666666667776665331 122211 11111 1111
Q ss_pred ------HHcCCHHHHHHHHHHHHH-------cCCCCCHHHHHHHHHH--HHhCCCHHHHHHHHHHHHHC-CCCCCH-HHH
Q 007695 513 ------ARAGIEKKALQALGFLEA-------KKEQMGPDDFERIING--LLAGGFLQDAQRVHGLMEAQ-GFAASE-RLK 575 (592)
Q Consensus 513 ------~~~g~~~~A~~~~~~m~~-------~~~~~~~~~~~~li~a--~~~~g~~~~A~~l~~~m~~~-g~~pd~-~~~ 575 (592)
-++|..++|..+++...- .+.......|..+|.+ ....|..+.|++.--.+.+. .+-|.. .+.
T Consensus 982 k~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiyS 1061 (1189)
T KOG2041|consen 982 KELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYS 1061 (1189)
T ss_pred HHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHH
Confidence 134666666665543211 1122234455555544 45678888888865555433 345555 333
Q ss_pred HHHHhhhhh
Q 007695 576 VALISSQTF 584 (592)
Q Consensus 576 ~~l~~~~~~ 584 (592)
.+-+++|..
T Consensus 1062 llALaaca~ 1070 (1189)
T KOG2041|consen 1062 LLALAACAV 1070 (1189)
T ss_pred HHHHHHhhh
Confidence 333444433
No 184
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.32 E-value=1.5 Score=44.62 Aligned_cols=261 Identities=18% Similarity=0.120 Sum_probs=166.6
Q ss_pred CCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH----HHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 007695 255 TNVRDYSKLIDA--HAKENCLEDAERILKKMNENGIVPDIVTSTVLVH----MYSKAGNLDRAKEAFESLRSHGFQPDKK 328 (592)
Q Consensus 255 p~~~~y~~Li~~--~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~----~~~~~g~~~~A~~~~~~m~~~g~~pd~~ 328 (592)
.|....-.|+.+ ..-.|+++.|.+-|+.|.. |..|-..=++ ..-+.|+.+.|.++-+..-... +.-..
T Consensus 116 sDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~W 189 (531)
T COG3898 116 SDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPW 189 (531)
T ss_pred ccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCch
Confidence 343334444443 3447999999999999987 4444333222 3346788888888887776542 33456
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHCC-CCCCHHH--HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCCCCH-HHHH
Q 007695 329 VYNSMIMAYVNAGQPKLGMSLVDMMITSG-IERSEEI--YLALLRSFAQ---CGDVRGAGQITNIMRIEEFQPTL-ESCT 401 (592)
Q Consensus 329 t~~~li~a~~~~g~~~~A~~l~~~m~~~g-~~p~~~t--~~~Ll~~~~~---~g~~~~A~~~~~~m~~~g~~~~~-~~~~ 401 (592)
.+.+.+...|..|+++.|+++++.-.... +.++..- -..|+.+-.. ..+...|...-.+..+ +.||. ..-.
T Consensus 190 A~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav 267 (531)
T COG3898 190 AARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAV 267 (531)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHH
Confidence 88899999999999999999998876643 3444322 2233322211 1234455554444443 35553 2333
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHH
Q 007695 402 LLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKD-GFEPG-PATYTVLVDWLGR 479 (592)
Q Consensus 402 ~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~-g~~p~-~~ty~~li~~~~~ 479 (592)
.-..++.+.|++.++-.+++.+-+..+.|+... +..+.+.|+ .++.-+++..+. .++|| ......+..+...
T Consensus 268 ~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~----lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAld 341 (531)
T COG3898 268 VAARALFRDGNLRKGSKILETAWKAEPHPDIAL----LYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALD 341 (531)
T ss_pred HHHHHHHhccchhhhhhHHHHHHhcCCChHHHH----HHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHh
Confidence 446788999999999999999998777776432 223445555 344444444332 35565 4666677788888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHc
Q 007695 480 LQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARA-GIEKKALQALGFLEAK 531 (592)
Q Consensus 480 ~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~-g~~~~A~~~~~~m~~~ 531 (592)
.|++..|..--+.... ..|....|..|.+.-... |+-.++...+-+....
T Consensus 342 a~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 342 AGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred ccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 8998887776665554 456777787777765544 9999999888877654
No 185
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.26 E-value=0.019 Score=43.06 Aligned_cols=57 Identities=14% Similarity=0.050 Sum_probs=37.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 007695 508 LCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEA 565 (592)
Q Consensus 508 Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~ 565 (592)
+...+...|++++|...|+.+.... +-++..|..+..++...|++++|...|+++.+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455667777777777777776653 33566667777777777777777777777664
No 186
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.22 E-value=0.059 Score=52.60 Aligned_cols=101 Identities=20% Similarity=0.194 Sum_probs=69.8
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHH
Q 007695 267 HAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLG 346 (592)
Q Consensus 267 ~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A 346 (592)
+.+.++|.+|+..|.+.++... -|.+.|..=..+|++.|.++.|.+-.+...... +....+|..|-.+|...|++.+|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P-~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDP-TNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHH
Confidence 4567778888888887777532 266677777777888888877777777766543 33455777777777778888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHH
Q 007695 347 MSLVDMMITSGIERSEEIYLALLRS 371 (592)
Q Consensus 347 ~~l~~~m~~~g~~p~~~t~~~Ll~~ 371 (592)
++.|++.++ +.|+..+|-.=+..
T Consensus 169 ~~aykKaLe--ldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHhhhc--cCCCcHHHHHHHHH
Confidence 777777765 45666666544443
No 187
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.21 E-value=0.04 Score=49.03 Aligned_cols=74 Identities=20% Similarity=0.198 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-----HCCCCCCHHHHHH
Q 007695 503 KIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLME-----AQGFAASERLKVA 577 (592)
Q Consensus 503 ~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~-----~~g~~pd~~~~~~ 577 (592)
.+...++..+...|+++.|..+.+.+... .+.+...|..+|.+|...|+..+|+++|+++. +.|+.|+..+..+
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~-dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l 141 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALAL-DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRAL 141 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHH
Confidence 45666777888899999999999988887 45578889999999999999999999988775 3499999855443
No 188
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.14 E-value=2.7 Score=45.85 Aligned_cols=107 Identities=8% Similarity=0.066 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007695 259 DYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYV 338 (592)
Q Consensus 259 ~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~ 338 (592)
.++.+...++....++.|.+.|..-.. . ...+.++.+..++++...+-..+. -|....-.|..++.
T Consensus 798 A~r~ig~~fa~~~~We~A~~yY~~~~~------~---e~~~ecly~le~f~~LE~la~~Lp-----e~s~llp~~a~mf~ 863 (1189)
T KOG2041|consen 798 AFRNIGETFAEMMEWEEAAKYYSYCGD------T---ENQIECLYRLELFGELEVLARTLP-----EDSELLPVMADMFT 863 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc------h---HhHHHHHHHHHhhhhHHHHHHhcC-----cccchHHHHHHHHH
Confidence 467777777777777777777765321 1 134555555555555544444443 34455566777777
Q ss_pred HcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 007695 339 NAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIM 388 (592)
Q Consensus 339 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m 388 (592)
..|.-++|.+.|-+- +. | ...+..|...++|.+|.++-+..
T Consensus 864 svGMC~qAV~a~Lr~---s~-p-----kaAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 864 SVGMCDQAVEAYLRR---SL-P-----KAAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred hhchHHHHHHHHHhc---cC-c-----HHHHHHHHHHHHHHHHHHHHHhc
Confidence 777777777666443 11 1 23455666667777766665443
No 189
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.10 E-value=0.27 Score=42.06 Aligned_cols=54 Identities=17% Similarity=0.142 Sum_probs=24.5
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007695 267 HAKENCLEDAERILKKMNENGIVPD--IVTSTVLVHMYSKAGNLDRAKEAFESLRS 320 (592)
Q Consensus 267 ~~~~g~~~~A~~l~~~m~~~g~~pd--~~~~~~Li~~~~~~g~~~~A~~~~~~m~~ 320 (592)
+-..|+.++|+.+|++....|+... ...+-.+...+...|++++|..+|+....
T Consensus 11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 11 HDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344555555555555555444322 12233344444444555555555544443
No 190
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.09 E-value=0.029 Score=42.42 Aligned_cols=50 Identities=20% Similarity=0.259 Sum_probs=20.0
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007695 375 CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR 425 (592)
Q Consensus 375 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~ 425 (592)
.|++++|.++|+.+.... +-+...+..+..+|.+.|++++|..+++.+..
T Consensus 4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444444443332 22333334444444444444444444444433
No 191
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.03 E-value=0.95 Score=42.77 Aligned_cols=171 Identities=16% Similarity=0.142 Sum_probs=91.6
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 007695 367 ALLRSFAQCGDVRGAGQITNIMRIEEF--QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGK 444 (592)
Q Consensus 367 ~Ll~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~ 444 (592)
.....+...|++.+|...|+.+....- +--..+.-.++.++.+.|+++.|...|+.....-+.-....+...+.+.+.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~ 89 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSY 89 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHH
Confidence 344455666777777777777765521 112345556677777777777777777776664332222223322222221
Q ss_pred cC-------------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 007695 445 KN-------------LLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDM 511 (592)
Q Consensus 445 ~g-------------~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~ 511 (592)
.. ...+|...| ..++.-|-......+|...+..+.+. =...--.+...
T Consensus 90 ~~~~~~~~~~~~D~~~~~~A~~~~---------------~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~ 150 (203)
T PF13525_consen 90 YKQIPGILRSDRDQTSTRKAIEEF---------------EELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARF 150 (203)
T ss_dssp HHHHHHHH-TT---HHHHHHHHHH---------------HHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HHhCccchhcccChHHHHHHHHHH---------------HHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 11 122333333 33444444445555666555555432 11222235677
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhCCCHHHHH
Q 007695 512 YARAGIEKKALQALGFLEAKKEQMG---PDDFERIINGLLAGGFLQDAQ 557 (592)
Q Consensus 512 ~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~a~~~~g~~~~A~ 557 (592)
|.+.|.+..|..-++.+.+. .+-+ ......++.+|.+.|..+.|.
T Consensus 151 Y~~~~~y~aA~~r~~~v~~~-yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 151 YYKRGKYKAAIIRFQYVIEN-YPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHCTT-HHHHHHHHHHHHHH-STTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHcccHHHHHHHHHHHHHH-CCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 88999999999999888875 2222 234566788888888887543
No 192
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.00 E-value=0.029 Score=42.08 Aligned_cols=55 Identities=13% Similarity=0.082 Sum_probs=27.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007695 265 DAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRS 320 (592)
Q Consensus 265 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~ 320 (592)
..+.+.|++++|...|+.+.+.... +...+..+..++...|++++|...|+++.+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445555555555555555554311 444455555555555555555555555543
No 193
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=95.99 E-value=0.043 Score=41.62 Aligned_cols=61 Identities=23% Similarity=0.196 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHH
Q 007695 363 EIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAG-DPDQARSNFDYMI 424 (592)
Q Consensus 363 ~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g-~~~~A~~lf~~m~ 424 (592)
.+|..+...+...|++++|...|++..+.. +.+...|..+..+|...| ++++|+..|++..
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 344444444444444444444444444443 233444444444444444 3444444444443
No 194
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=95.91 E-value=0.044 Score=41.55 Aligned_cols=64 Identities=9% Similarity=0.007 Sum_probs=41.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Q 007695 501 PFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGG-FLQDAQRVHGLMEA 565 (592)
Q Consensus 501 ~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g-~~~~A~~l~~~m~~ 565 (592)
+..+|..+...+...|++++|...|++..+.+ +-++..|..+..+|...| ++++|++.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 34566666666777777777777777666653 334556666666777776 56777777666554
No 195
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.90 E-value=0.84 Score=46.67 Aligned_cols=264 Identities=13% Similarity=0.007 Sum_probs=157.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH
Q 007695 299 VHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378 (592)
Q Consensus 299 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~ 378 (592)
-..+.+..++..|+..+....+.+ +.++.-|..-...+...+++++|.--.+.-+..... ....+.-.-+++...++.
T Consensus 56 gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a~~~~ 133 (486)
T KOG0550|consen 56 GNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLALSDL 133 (486)
T ss_pred cchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhhhHHH
Confidence 344556777788888888877764 445556666666777777777776555544432110 111233333333333333
Q ss_pred HHHHHHHHH------------H---HHcCC-CCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-
Q 007695 379 RGAGQITNI------------M---RIEEF-QPTLESCTLL-VEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIA- 440 (592)
Q Consensus 379 ~~A~~~~~~------------m---~~~g~-~~~~~~~~~L-i~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~- 440 (592)
.+|...++. . ..... +|...+|..+ ..++.-.|+++.|..+-....+... ...+...+.
T Consensus 134 i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~---~n~~al~vrg 210 (486)
T KOG0550|consen 134 IEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDA---TNAEALYVRG 210 (486)
T ss_pred HHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhccc---chhHHHHhcc
Confidence 333333221 1 11111 2333344333 3456678889988888777666322 223333333
Q ss_pred -HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH---HHH----------HHHHcCCHHHHHHHHHHHHhc---CCCCCHH
Q 007695 441 -AYGKKNLLDKALNLLLELEKDGFEPGPATYTV---LVD----------WLGRLQLINEAEQLLGKISEL---GEAPPFK 503 (592)
Q Consensus 441 -a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~---li~----------~~~~~g~~~~A~~l~~~m~~~---g~~p~~~ 503 (592)
++-..++.+.|...|++-+.. .|+...-.+ ... -..+.|++..|.+.|.+.+.. +..|+..
T Consensus 211 ~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nak 288 (486)
T KOG0550|consen 211 LCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAK 288 (486)
T ss_pred cccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHH
Confidence 344567889999999887663 354322211 111 235779999999999998764 3456777
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC
Q 007695 504 IQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAA 570 (592)
Q Consensus 504 ~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p 570 (592)
.|........+.|+..+|+.-.+.....+. .-...|..-..++...++|++|.+-|++..+..-.+
T Consensus 289 lY~nra~v~~rLgrl~eaisdc~~Al~iD~-syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~ 354 (486)
T KOG0550|consen 289 LYGNRALVNIRLGRLREAISDCNEALKIDS-SYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDC 354 (486)
T ss_pred HHHHhHhhhcccCCchhhhhhhhhhhhcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 788888888999999999998888765421 112233444556667799999999998877654333
No 196
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.88 E-value=0.46 Score=45.64 Aligned_cols=58 Identities=19% Similarity=0.136 Sum_probs=25.8
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 007695 331 NSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIM 388 (592)
Q Consensus 331 ~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m 388 (592)
+.+++.+.-.|.+.-...++.+.++...+.++.....|.+.-.+.|+.+.|...|+..
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~v 238 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDV 238 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 3344444444444444444444444433334444444444444444444444444433
No 197
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.87 E-value=1.3 Score=41.90 Aligned_cols=55 Identities=18% Similarity=0.226 Sum_probs=25.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007695 266 AHAKENCLEDAERILKKMNENGIV--PDIVTSTVLVHMYSKAGNLDRAKEAFESLRS 320 (592)
Q Consensus 266 ~~~~~g~~~~A~~l~~~m~~~g~~--pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~ 320 (592)
.+...|++.+|.+.|+.+...... --....-.++.++.+.|+++.|...|+...+
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455555555555555543111 0122233444555555555555555555543
No 198
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.84 E-value=0.47 Score=46.68 Aligned_cols=101 Identities=16% Similarity=0.162 Sum_probs=65.9
Q ss_pred CCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHcCCCCCHHHH
Q 007695 324 QPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG---DVRGAGQITNIMRIEEFQPTLESC 400 (592)
Q Consensus 324 ~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g---~~~~A~~~~~~m~~~g~~~~~~~~ 400 (592)
+-|...|-.|...|.+.|+.+.|...|....+.. ..|...+..+..++.... ...++..+|+++...+ +.|+.+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 4566677777777777777777777777766642 335555555555544332 2456677777777665 5566666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Q 007695 401 TLLVEAYGQAGDPDQARSNFDYMIRL 426 (592)
Q Consensus 401 ~~Li~~~~~~g~~~~A~~lf~~m~~~ 426 (592)
..|...+...|++.+|...|+.|...
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 66777777777777777777777764
No 199
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=95.83 E-value=1.4 Score=40.18 Aligned_cols=101 Identities=16% Similarity=0.050 Sum_probs=47.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CCHHHHHHH
Q 007695 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA-PPFKIQVSL 508 (592)
Q Consensus 430 pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~~~~~L 508 (592)
|+...-..+..+....|+..+|...|.+....-+.-|......+.++....+++..|...++.+.+.+.. -++.+.-.+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 3444444444555555555555555555443333344444555555555555555555555554443210 012223334
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 007695 509 CDMYARAGIEKKALQALGFLEA 530 (592)
Q Consensus 509 i~~~~~~g~~~~A~~~~~~m~~ 530 (592)
...|...|.+..|...|+....
T Consensus 167 aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHH
Confidence 4455555555555555555544
No 200
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=95.71 E-value=1.6 Score=39.86 Aligned_cols=101 Identities=15% Similarity=0.125 Sum_probs=48.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCC-CCCHHHHHHH
Q 007695 290 PDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGI-ERSEEIYLAL 368 (592)
Q Consensus 290 pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~L 368 (592)
|++..-..|..+....|+..+|...|++...--+..|....-.+.++....+++..|...++.+.+... .-++.+...+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 444444455555555555555555555554433334444445555555555555555555555544320 0112233344
Q ss_pred HHHHHhCCCHHHHHHHHHHHHH
Q 007695 369 LRSFAQCGDVRGAGQITNIMRI 390 (592)
Q Consensus 369 l~~~~~~g~~~~A~~~~~~m~~ 390 (592)
.+.|...|.+.+|..-|+....
T Consensus 167 aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHH
Confidence 4455555555555555554443
No 201
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.68 E-value=0.27 Score=48.44 Aligned_cols=98 Identities=9% Similarity=-0.008 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHH
Q 007695 469 TYTVLVDWLGRLQLINEAEQLLGKISELGEAPP--FKIQVSLCDMYARAGIEKKALQALGFLEAKKE--QMGPDDFERII 544 (592)
Q Consensus 469 ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~li 544 (592)
.|...+..+.+.|++++|...|+.+.+.-.... ...+..+..+|...|++++|...|+.+..... ...++.+..+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 344444444455666666666666665432211 24555666667777777777777777665311 11234455556
Q ss_pred HHHHhCCCHHHHHHHHHHHHHC
Q 007695 545 NGLLAGGFLQDAQRVHGLMEAQ 566 (592)
Q Consensus 545 ~a~~~~g~~~~A~~l~~~m~~~ 566 (592)
..+...|+.++|.++|+...+.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 6666677777777777776654
No 202
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.66 E-value=4.5 Score=44.63 Aligned_cols=318 Identities=13% Similarity=0.096 Sum_probs=176.5
Q ss_pred ccCCchhHHHHHHhhcCCCHhhHHHHHH--HH--Hhh---CHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 007695 203 KEEDPSPLLAEWKELLQPSRIDWINLLD--RL--REQ---NTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLED 275 (592)
Q Consensus 203 ~~g~~~~A~~~~~~~~~p~~~t~~~lL~--~~--~~~---~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~ 275 (592)
..+.+..|+++-+-+..|.... ..++. +. ..+ ..+...+.+..-++.. . ....+|..+..-....|+.+.
T Consensus 449 ~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~-~~~iSy~~iA~~Ay~~GR~~L 525 (829)
T KOG2280|consen 449 DRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-L-TPGISYAAIARRAYQEGRFEL 525 (829)
T ss_pred hcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc-C-CCceeHHHHHHHHHhcCcHHH
Confidence 6778888888877665554322 11222 21 111 1233444444433332 2 333468888888888999999
Q ss_pred HHHHHHHHHHCCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHH
Q 007695 276 AERILKKMNENGIV----PDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVD 351 (592)
Q Consensus 276 A~~l~~~m~~~g~~----pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~ 351 (592)
|..+++.=...+.. .+..-+...+.-+.+.|+.+....++-.+... .+...|...+ .+...|..+|.
T Consensus 526 A~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l~~~l------~~~p~a~~lY~ 596 (829)
T KOG2280|consen 526 ARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSLFMTL------RNQPLALSLYR 596 (829)
T ss_pred HHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHHHHHH------HhchhhhHHHH
Confidence 99888753222111 12223455566667777777777776666642 1222222222 23355666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH-HHHH----HcCCCCCHHHHHHHHHHHHHcCCH----------HHH
Q 007695 352 MMITSGIERSEEIYLALLRSFAQCGDVRGAGQIT-NIMR----IEEFQPTLESCTLLVEAYGQAGDP----------DQA 416 (592)
Q Consensus 352 ~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~-~~m~----~~g~~~~~~~~~~Li~~~~~~g~~----------~~A 416 (592)
+..... |..+ +-..|....+...+-.+. +... ..+..|+ .....+.+.+.... .+-
T Consensus 597 ~~~r~~---~~~~---l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka~ed~~kL 667 (829)
T KOG2280|consen 597 QFMRHQ---DRAT---LYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAKALEDQMKL 667 (829)
T ss_pred HHHHhh---chhh---hhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHHHHHHHHHH
Confidence 554421 1111 112222222222211111 1100 1121222 22233344443331 122
Q ss_pred HHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007695 417 RSNFDYMIR-LGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495 (592)
Q Consensus 417 ~~lf~~m~~-~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 495 (592)
..++..+.. .|......+.+--+.-+...|+..+|.++-.+.+ -||...|---+.+++..+++++-+++-+...
T Consensus 668 l~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk- 742 (829)
T KOG2280|consen 668 LKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK- 742 (829)
T ss_pred HHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC-
Confidence 223333333 2334445566666777888888888888777663 5888888888889999999988888766554
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 007695 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVH 560 (592)
Q Consensus 496 ~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~ 560 (592)
++.-|.-++..|.+.|+.++|.+++-+... +.-...+|.+.|++.+|.++-
T Consensus 743 -----sPIGy~PFVe~c~~~~n~~EA~KYiprv~~---------l~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 743 -----SPIGYLPFVEACLKQGNKDEAKKYIPRVGG---------LQEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred -----CCCCchhHHHHHHhcccHHHHhhhhhccCC---------hHHHHHHHHHhccHHHHHHHH
Confidence 234466678889999999999988765522 225678888899988887754
No 203
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.63 E-value=2.3 Score=43.82 Aligned_cols=28 Identities=11% Similarity=0.082 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 007695 539 DFERIINGLLAGGFLQDAQRVHGLMEAQ 566 (592)
Q Consensus 539 ~~~~li~a~~~~g~~~~A~~l~~~m~~~ 566 (592)
.+.+++.++.-.|+.++|.+.+++|...
T Consensus 307 d~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 307 DVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 3456777777788888888888888765
No 204
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.62 E-value=0.2 Score=50.90 Aligned_cols=133 Identities=16% Similarity=-0.027 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----hcCCC-CCH
Q 007695 433 RCTASMIAAYGKKNLLDKALNLLLELE----KDGFE-PGPATYTVLVDWLGRLQLINEAEQLLGKIS----ELGEA-PPF 502 (592)
Q Consensus 433 ~t~~~li~a~~~~g~~~~A~~l~~~m~----~~g~~-p~~~ty~~li~~~~~~g~~~~A~~l~~~m~----~~g~~-p~~ 502 (592)
.+|..+-..|.-.|+++.|+...+.=. +.|-+ .....+..+..++.-.|+++.|.+.|+... +.|-+ ...
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 345666666667788888876554321 22321 123456667777777788888887777543 33322 234
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH----HcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 007695 503 KIQVSLCDMYARAGIEKKALQALGFLE----AKKEQM-GPDDFERIINGLLAGGFLQDAQRVHGLMEA 565 (592)
Q Consensus 503 ~~~~~Li~~~~~~g~~~~A~~~~~~m~----~~~~~~-~~~~~~~li~a~~~~g~~~~A~~l~~~m~~ 565 (592)
.+..+|.+.|.-..++++|+.++.+-. +.+... ....+.+|..+|...|..++|+.+.+.-++
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 566677778877778888887765422 221111 233566788888888888888877665543
No 205
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.52 E-value=0.19 Score=43.42 Aligned_cols=49 Identities=16% Similarity=0.308 Sum_probs=23.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHH
Q 007695 429 KPDDRCTASMIAAYGKKNLLDKALNLLLELEKD-GFEPGPATYTVLVDWL 477 (592)
Q Consensus 429 ~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~-g~~p~~~ty~~li~~~ 477 (592)
.|+..+..+++.+|+.+|++..|+++.+...+. +++.+..++..|+..+
T Consensus 49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 344455555555555555555555555544433 4444444444444433
No 206
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.51 E-value=0.29 Score=48.21 Aligned_cols=95 Identities=15% Similarity=0.123 Sum_probs=55.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--CCCCHHHHHHH
Q 007695 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPD----IVTSTVLVHMYSKAGNLDRAKEAFESLRSHG--FQPDKKVYNSM 333 (592)
Q Consensus 260 y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd----~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g--~~pd~~t~~~l 333 (592)
|...+....+.|++++|...|+.+.+.- |+ ...+..+...|...|++++|...|..+.+.- -+.....+-.+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 4444444455577777777777776642 22 2345566667777777777777777776431 01123344445
Q ss_pred HHHHHHcCCchHHHHHHHHHHHC
Q 007695 334 IMAYVNAGQPKLGMSLVDMMITS 356 (592)
Q Consensus 334 i~a~~~~g~~~~A~~l~~~m~~~ 356 (592)
...+...|+.++|..+|+.+++.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 55566667777777777666654
No 207
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.50 E-value=0.82 Score=44.98 Aligned_cols=99 Identities=19% Similarity=0.034 Sum_probs=47.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 007695 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRL---QLINEAEQLLGKISELGEAPPFKIQVS 507 (592)
Q Consensus 431 d~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~---g~~~~A~~l~~~m~~~g~~p~~~~~~~ 507 (592)
|...|-.|-.+|...|+++.|..-|.+..+.. .+|...+..+..++... ....++..+++++...... |..+...
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHHHH
Confidence 44555555555555555555555555544431 12333333333333222 1234455555555554433 4455555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Q 007695 508 LCDMYARAGIEKKALQALGFLEAK 531 (592)
Q Consensus 508 Li~~~~~~g~~~~A~~~~~~m~~~ 531 (592)
|...+...|++.+|...|+.|.+.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc
Confidence 555555555555555555555543
No 208
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.41 E-value=0.13 Score=45.68 Aligned_cols=56 Identities=18% Similarity=0.197 Sum_probs=25.9
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007695 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM 423 (592)
Q Consensus 367 ~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m 423 (592)
.++..+...|+++.|..+...+.... +.|...|..+|.+|...|+...|.++|+.+
T Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 67 RLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 34444444555555555555554443 344445555555555555555555555443
No 209
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.29 E-value=0.23 Score=42.87 Aligned_cols=51 Identities=18% Similarity=0.146 Sum_probs=39.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHH
Q 007695 392 EFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL-GHKPDDRCTASMIAAY 442 (592)
Q Consensus 392 g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~-g~~pd~~t~~~li~a~ 442 (592)
.+.|+..+..+++.+|+..|++..|.++.+...+. ++.-+..+|..|+.=+
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 45678888888888888888888888888887773 6666777787777644
No 210
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.01 E-value=4.3 Score=41.90 Aligned_cols=32 Identities=19% Similarity=-0.004 Sum_probs=19.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007695 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKD 461 (592)
Q Consensus 430 pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~ 461 (592)
.|-.-+.+++.++.-.|+.++|.+.+++|.+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 34445556666666666666666666666553
No 211
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=94.93 E-value=0.18 Score=38.58 Aligned_cols=55 Identities=15% Similarity=0.040 Sum_probs=28.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 007695 511 MYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQ 566 (592)
Q Consensus 511 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~ 566 (592)
.|.+.+++++|.++++.+...+ +.++..|......+.+.|++++|.+.|+...+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4455555555555555555542 224444555555555555555555555555543
No 212
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.92 E-value=3.9 Score=39.55 Aligned_cols=133 Identities=10% Similarity=-0.014 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH----
Q 007695 399 SCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV---- 474 (592)
Q Consensus 399 ~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li---- 474 (592)
..+.++..+.-.|.+.-....+++.++....-+......+.+.-.+.||.+.|...|++..+..-+.|..+++.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 3455666666667777777777777776655677777777777788888888888888766543334443443333
Q ss_pred -HHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 007695 475 -DWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKK 532 (592)
Q Consensus 475 -~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~ 532 (592)
..+.-.+++..|...+.++...+.. ++...|.-.-+..-.|+...|.+..+.|....
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 3455567788888888887766544 45545544444445688888999888887753
No 213
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=94.90 E-value=0.17 Score=38.71 Aligned_cols=56 Identities=16% Similarity=0.051 Sum_probs=33.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 007695 265 DAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSH 321 (592)
Q Consensus 265 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~ 321 (592)
..|.+.++++.|.++++.+...+.. +...|.....++.+.|++++|.+.|+...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3455666666666666666665322 4555555666666666666666666666554
No 214
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.66 E-value=10 Score=44.23 Aligned_cols=101 Identities=17% Similarity=0.080 Sum_probs=51.1
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCCHH
Q 007695 407 YGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGP--ATYTVLVDWLGRLQLIN 484 (592)
Q Consensus 407 ~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~--~ty~~li~~~~~~g~~~ 484 (592)
+...+.+++|--.|+..-+ ..-.+.+|..+|+|.+|+.+..+|... -+. .+-..|+.-+...++.-
T Consensus 949 L~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~ 1016 (1265)
T KOG1920|consen 949 LREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHY 1016 (1265)
T ss_pred HHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccch
Confidence 3344555555555554322 112455666667777666666655321 111 11244555566666666
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007695 485 EAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGF 527 (592)
Q Consensus 485 ~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~ 527 (592)
+|-++..+.... ..-.+..|++...+++|.++...
T Consensus 1017 eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1017 EAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred hHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHh
Confidence 666666554331 11223345555566666666443
No 215
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.56 E-value=0.52 Score=45.73 Aligned_cols=118 Identities=17% Similarity=0.268 Sum_probs=70.2
Q ss_pred CCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 007695 254 QTNVRDYSKLIDAHAK-----ENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKK 328 (592)
Q Consensus 254 ~p~~~~y~~Li~~~~~-----~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~ 328 (592)
+-|-.+|-..+..+.. .+.++-....++.|.+.|+..|..+|+.|++.+-+..-. |. .
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfi----------------P~-n 126 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFI----------------PQ-N 126 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccc----------------cH-H
Confidence 4455566666655543 244555556666666777777777777666655433211 11 1
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH-HHHHHHHHHHHH
Q 007695 329 VYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV-RGAGQITNIMRI 390 (592)
Q Consensus 329 t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~-~~A~~~~~~m~~ 390 (592)
.+....--|- .+-+-+++++++|...|+.||..+-..|++++.+.+.. .+..++.--|.+
T Consensus 127 vfQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 127 VFQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred HHHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 1111111111 12345788899999999999999999999999887763 344555444543
No 216
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.54 E-value=0.29 Score=47.40 Aligned_cols=106 Identities=19% Similarity=0.286 Sum_probs=62.6
Q ss_pred CCCHHHHHHHHHHHHHc-----CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Q 007695 324 QPDKKVYNSMIMAYVNA-----GQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLE 398 (592)
Q Consensus 324 ~pd~~t~~~li~a~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 398 (592)
+.|..+|-+++..+... +.++-....++.|.+.|+.-|..+|+.||+.+-+..- .|..
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~n- 126 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQN- 126 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccHH-
Confidence 44666776666666543 4555666666777777777777777777766544221 1110
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 007695 399 SCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLL 448 (592)
Q Consensus 399 ~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~ 448 (592)
.+....--|= .+-+-+++++++|..+|+.||-.+-..+++++.+.|..
T Consensus 127 vfQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 127 VFQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 1111111111 12234677888888888888888888888888777653
No 217
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=94.53 E-value=3.2 Score=44.87 Aligned_cols=89 Identities=15% Similarity=0.123 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH---------
Q 007695 467 PATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGP--------- 537 (592)
Q Consensus 467 ~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--------- 537 (592)
..+...+..-+-+...+.-|.++|..|-+ ...++......+++.+|..+-+...+. .++.
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLA 815 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLA 815 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhh
Confidence 34455555555556666677777776643 124566677778888887777665542 1121
Q ss_pred --HHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 007695 538 --DDFERIINGLLAGGFLQDAQRVHGLMEAQ 566 (592)
Q Consensus 538 --~~~~~li~a~~~~g~~~~A~~l~~~m~~~ 566 (592)
+-|...-.+|.+.|+-++|.++++++-..
T Consensus 816 E~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 816 ENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 12444557788888888888888877544
No 218
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.43 E-value=5.9 Score=39.46 Aligned_cols=123 Identities=15% Similarity=0.144 Sum_probs=58.1
Q ss_pred HHHcCCHHHHHHHHHHHHHCC--CCCCHH------HHHHHHHHHHHcC-CHHHHHHHHHHHHhC--------CCCCCH--
Q 007695 267 HAKENCLEDAERILKKMNENG--IVPDIV------TSTVLVHMYSKAG-NLDRAKEAFESLRSH--------GFQPDK-- 327 (592)
Q Consensus 267 ~~~~g~~~~A~~l~~~m~~~g--~~pd~~------~~~~Li~~~~~~g-~~~~A~~~~~~m~~~--------g~~pd~-- 327 (592)
..+.|+++.|..++.+....- ..|+.. .|+.-... .+.+ +++.|..++++..+. ...|+.
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l-~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~e 81 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSL-LSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSE 81 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHH-HHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHH
Confidence 356788888888888776532 223221 23322222 2334 666666655544321 112222
Q ss_pred ---HHHHHHHHHHHHcCCch---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 007695 328 ---KVYNSMIMAYVNAGQPK---LGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE 391 (592)
Q Consensus 328 ---~t~~~li~a~~~~g~~~---~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~ 391 (592)
.++..++.+|...+..+ +|..+++.+.... .-...++..-+..+.+.++.+.+.+++..|...
T Consensus 82 lr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 82 LRLSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 23444555555544433 3334444443321 112344444455555555555555555555544
No 219
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=94.37 E-value=6.1 Score=42.85 Aligned_cols=216 Identities=16% Similarity=0.145 Sum_probs=119.4
Q ss_pred HHHHHHHHHHcCCH--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH-----H
Q 007695 260 YSKLIDAHAKENCL--EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYN-----S 332 (592)
Q Consensus 260 y~~Li~~~~~~g~~--~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~-----~ 332 (592)
++..=.+|.+-++. -+...-+++++++|-.|+... +...++-.|++.+|.++|.+--..+ .-...|+ .
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~en--RAlEmyTDlRMFD 675 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGHEN--RALEMYTDLRMFD 675 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCchh--hHHHHHHHHHHHH
Confidence 34444556555443 333444567788888788763 4455666777888877775432110 0111222 1
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH------HHHcCC---CCCHHHHH
Q 007695 333 MIMAYVNAGQPKLGMSLVDMMITS--GIERSEEIYLALLRSFAQCGDVRGAGQITNI------MRIEEF---QPTLESCT 401 (592)
Q Consensus 333 li~a~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~------m~~~g~---~~~~~~~~ 401 (592)
+..-|...|..++-..+.++=.+. .++ --.+....+..+|+.++|..+.-+ +...+- ..+..+..
T Consensus 676 ~aQE~~~~g~~~eKKmL~RKRA~WAr~~k----ePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~ 751 (1081)
T KOG1538|consen 676 YAQEFLGSGDPKEKKMLIRKRADWARNIK----EPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLL 751 (1081)
T ss_pred HHHHHhhcCChHHHHHHHHHHHHHhhhcC----CcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHH
Confidence 233445555555554444432221 111 112334455566666666544221 111111 22345555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-----------HH
Q 007695 402 LLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPA-----------TY 470 (592)
Q Consensus 402 ~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~-----------ty 470 (592)
.+...+.+...+.-|-++|..|-. ...+++.....+++++|..+-+...+ ..||.. -|
T Consensus 752 ~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE~DrF 820 (1081)
T KOG1538|consen 752 LCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLAENDRF 820 (1081)
T ss_pred HHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHhhhhhhH
Confidence 555556667778888999988854 23467778889999999998887655 334431 23
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Q 007695 471 TVLVDWLGRLQLINEAEQLLGKISE 495 (592)
Q Consensus 471 ~~li~~~~~~g~~~~A~~l~~~m~~ 495 (592)
.-.-.+|.++|+-.+|.++++++..
T Consensus 821 eEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 821 EEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred HHHHHHHHHhcchHHHHHHHHHhhh
Confidence 3344566777777777777777654
No 220
>PRK15331 chaperone protein SicA; Provisional
Probab=94.25 E-value=1.3 Score=39.78 Aligned_cols=87 Identities=13% Similarity=-0.026 Sum_probs=47.6
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 007695 302 YSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGA 381 (592)
Q Consensus 302 ~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A 381 (592)
+-..|++++|..+|.-+...+ .-|..-|..|..+|-..+++++|+..|......+. -|+..+-....+|...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHH
Confidence 345566666666666655443 23444455555555556666666666655544332 2444444555556666666666
Q ss_pred HHHHHHHHH
Q 007695 382 GQITNIMRI 390 (592)
Q Consensus 382 ~~~~~~m~~ 390 (592)
...|.....
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 666555554
No 221
>PRK15331 chaperone protein SicA; Provisional
Probab=94.19 E-value=0.47 Score=42.61 Aligned_cols=86 Identities=14% Similarity=-0.033 Sum_probs=43.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007695 443 GKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKAL 522 (592)
Q Consensus 443 ~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~ 522 (592)
-+.|++++|..+|.-+...+ .-+..-+..|..++-..++++.|...|......+.. |+..+-....+|...|+.+.|.
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHHHH
Confidence 44566666666665554432 112333344444455555566666665554443332 3333334455555556666666
Q ss_pred HHHHHHHH
Q 007695 523 QALGFLEA 530 (592)
Q Consensus 523 ~~~~~m~~ 530 (592)
..|+....
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 65555544
No 222
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.19 E-value=0.17 Score=39.36 Aligned_cols=62 Identities=11% Similarity=-0.013 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 007695 503 KIQVSLCDMYARAGIEKKALQALGFLEAKK--EQMG----PDDFERIINGLLAGGFLQDAQRVHGLME 564 (592)
Q Consensus 503 ~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~--~~~~----~~~~~~li~a~~~~g~~~~A~~l~~~m~ 564 (592)
.+++.+...|...|++++|+..|++..+.. ..++ ..++..+...|...|++++|++.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 355566666666666666666666544320 1111 2245556666666777777766666544
No 223
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.15 E-value=6.6 Score=39.45 Aligned_cols=138 Identities=12% Similarity=0.085 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--cC----CHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhcCC--
Q 007695 379 RGAGQITNIMRIEEFQPTLESCTLLVEAYGQ--AG----DPDQARSNFDYMIRLGH---KPDDRCTASMIAAYGKKNL-- 447 (592)
Q Consensus 379 ~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~--~g----~~~~A~~lf~~m~~~g~---~pd~~t~~~li~a~~~~g~-- 447 (592)
+....+++.+.+.|+..+..+|-+....... .. ...+|..+|+.|+++.+ .++..++..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3455667777777776666555443222222 12 24567777888877532 4556666666544 2232
Q ss_pred --HHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCC--HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCH
Q 007695 448 --LDKALNLLLELEKDGFEPGP--ATYTVLVDWLGRLQL--INEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIE 518 (592)
Q Consensus 448 --~~~A~~l~~~m~~~g~~p~~--~ty~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~ 518 (592)
.+.+..+|+.+.+.|+..+. ...+.++..+..... ...+..+++.+.+.|+++....|..+.-...-.+..
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~ 233 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPE 233 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCch
Confidence 34566677777776665443 233333332222222 346777777777777776666666554444333333
No 224
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.11 E-value=1.7 Score=46.28 Aligned_cols=132 Identities=18% Similarity=0.112 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007695 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDW 476 (592)
Q Consensus 397 ~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~ 476 (592)
....+.++..+-+.|..+.|+.+-.+-.. -.....+.|+++.|.++.++. .+...|..|.+.
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~ 356 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLDIALEIAKEL------DDPEKWKQLGDE 356 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHH
Confidence 34455666666666666666655443221 122334566666665544322 345566666666
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHH
Q 007695 477 LGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDA 556 (592)
Q Consensus 477 ~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A 556 (592)
..+.|+++-|...|++..+ +..|+-.|...|+.+.-.++.+....++. ++....++.-.|+.++.
T Consensus 357 AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~c 421 (443)
T PF04053_consen 357 ALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEEC 421 (443)
T ss_dssp HHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHH
T ss_pred HHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHH
Confidence 6666666666666665432 33444556666666666665555554432 44445555555555555
Q ss_pred HHHHH
Q 007695 557 QRVHG 561 (592)
Q Consensus 557 ~~l~~ 561 (592)
.+++.
T Consensus 422 v~lL~ 426 (443)
T PF04053_consen 422 VDLLI 426 (443)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 225
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.07 E-value=1.2 Score=46.74 Aligned_cols=66 Identities=11% Similarity=-0.021 Sum_probs=57.3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 007695 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDI----VTSTVLVHMYSKAGNLDRAKEAFESLRSH 321 (592)
Q Consensus 254 ~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~----~~~~~Li~~~~~~g~~~~A~~~~~~m~~~ 321 (592)
+.+...|+.+..+|.+.|++++|+..|++..+. .|+. .+|..+..+|...|++++|+..|++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 457778999999999999999999999998885 4553 45899999999999999999999999874
No 226
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=93.88 E-value=2.6 Score=43.73 Aligned_cols=130 Identities=15% Similarity=0.139 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007695 293 VTSTVLVHMYSKAGNLDRAKEAFESLRSHG-FQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRS 371 (592)
Q Consensus 293 ~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g-~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~ 371 (592)
.+|...|+...+..-++.|..+|-++.+.| +.+++..++++|.-++ .|++.-|..+|+--... .+-+..--+-.+..
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~-f~d~~~y~~kyl~f 475 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK-FPDSTLYKEKYLLF 475 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh-CCCchHHHHHHHHH
Confidence 345555555555555666666666666555 4455556666665553 34555555555543332 11122222344455
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007695 372 FAQCGDVRGAGQITNIMRIEEFQPT--LESCTLLVEAYGQAGDPDQARSNFDYMIR 425 (592)
Q Consensus 372 ~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~Li~~~~~~g~~~~A~~lf~~m~~ 425 (592)
+...++-+.|..+|+....+- ..+ ...|..+|.--..-|++..+..+=+.|..
T Consensus 476 Li~inde~naraLFetsv~r~-~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 476 LIRINDEENARALFETSVERL-EKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHHH-HHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 555566666666665433221 111 34555555555555666555555555544
No 227
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.73 E-value=4.9 Score=36.46 Aligned_cols=31 Identities=23% Similarity=0.364 Sum_probs=15.9
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCch
Q 007695 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPK 344 (592)
Q Consensus 314 ~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~ 344 (592)
....+.+.+++|+...|..+++.+.+.|++.
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~ 46 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFS 46 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Confidence 3333444555555555555555555555543
No 228
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=93.60 E-value=0.3 Score=49.69 Aligned_cols=97 Identities=13% Similarity=-0.016 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH----hcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HcC-CCCCH
Q 007695 468 ATYTVLVDWLGRLQLINEAEQLLGKIS----ELGEA-PPFKIQVSLCDMYARAGIEKKALQALGFLE----AKK-EQMGP 537 (592)
Q Consensus 468 ~ty~~li~~~~~~g~~~~A~~l~~~m~----~~g~~-p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~----~~~-~~~~~ 537 (592)
..|..|-..|.-.|+++.|....+.-. +.|-+ .-...+..|.+++.-.|+++.|.+.++... +.+ .....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 456666666777789999998877532 22322 134577889999999999999999887532 222 22334
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 007695 538 DDFERIINGLLAGGFLQDAQRVHGLME 564 (592)
Q Consensus 538 ~~~~~li~a~~~~g~~~~A~~l~~~m~ 564 (592)
....+|.+.|.-...+++|+.++++-+
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHL 302 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHL 302 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 456668888888889999999887643
No 229
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.59 E-value=4.7 Score=35.29 Aligned_cols=42 Identities=14% Similarity=0.264 Sum_probs=19.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 007695 403 LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKK 445 (592)
Q Consensus 403 Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~ 445 (592)
++..+.+.+.......+++.+...+. .+...++.++..|++.
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~ 54 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHH
Confidence 34444444455555555555444432 3444444555555443
No 230
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.56 E-value=4.7 Score=40.51 Aligned_cols=126 Identities=11% Similarity=0.105 Sum_probs=59.3
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHH--cC----CchHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhCCC---
Q 007695 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVN--AG----QPKLGMSLVDMMITSGI---ERSEEIYLALLRSFAQCGD--- 377 (592)
Q Consensus 310 ~A~~~~~~m~~~g~~pd~~t~~~li~a~~~--~g----~~~~A~~l~~~m~~~g~---~p~~~t~~~Ll~~~~~~g~--- 377 (592)
+...+++.|.+.|+..+..+|-+..-.... .. ....|..+|+.|.+... .++..++..++.. ...+
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~ 157 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEE 157 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHH
Confidence 344555666666665555444442222222 11 12356666666666431 2334444444433 2222
Q ss_pred -HHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCCCHHHHHH
Q 007695 378 -VRGAGQITNIMRIEEFQPTL--ESCTLLVEAYGQAGD--PDQARSNFDYMIRLGHKPDDRCTAS 437 (592)
Q Consensus 378 -~~~A~~~~~~m~~~g~~~~~--~~~~~Li~~~~~~g~--~~~A~~lf~~m~~~g~~pd~~t~~~ 437 (592)
.+.+..+|+.+...|+..+- ...+.++.......+ ..++..+++.+.+.|+++....|..
T Consensus 158 l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~ 222 (297)
T PF13170_consen 158 LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPT 222 (297)
T ss_pred HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccH
Confidence 24455666666665554432 222222222211111 3456666777777766666555553
No 231
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=93.50 E-value=0.15 Score=39.69 Aligned_cols=61 Identities=21% Similarity=0.238 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCC-CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007695 259 DYSKLIDAHAKENCLEDAERILKKMNEN----GIV-PD-IVTSTVLVHMYSKAGNLDRAKEAFESLR 319 (592)
Q Consensus 259 ~y~~Li~~~~~~g~~~~A~~l~~~m~~~----g~~-pd-~~~~~~Li~~~~~~g~~~~A~~~~~~m~ 319 (592)
+|+.+...|...|++++|+..|++..+. |-. |+ ..+++.+..+|...|++++|.+.|++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4566666666666666666666665432 111 11 3345556666666666666666665543
No 232
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.27 E-value=8.5 Score=37.99 Aligned_cols=52 Identities=15% Similarity=0.207 Sum_probs=24.7
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007695 267 HAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319 (592)
Q Consensus 267 ~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~ 319 (592)
....|++.+|..+|+........ +...--.++.+|...|+++.|..++..+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 34445555555555555443221 23333344555555555555555555544
No 233
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.11 E-value=1.1 Score=44.24 Aligned_cols=79 Identities=15% Similarity=0.204 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 007695 502 FKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEA-----QGFAASERLKV 576 (592)
Q Consensus 502 ~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~-----~g~~pd~~~~~ 576 (592)
..++..++..+..+|+.+.+...++++... .+-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~-dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIEL-DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhc-CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 346677788888888888888888888776 344666788888888888888888888877764 48888876666
Q ss_pred HHHhh
Q 007695 577 ALISS 581 (592)
Q Consensus 577 ~l~~~ 581 (592)
.+...
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 65555
No 234
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.10 E-value=5.6 Score=34.78 Aligned_cols=44 Identities=23% Similarity=0.289 Sum_probs=25.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 007695 261 SKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKA 305 (592)
Q Consensus 261 ~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~ 305 (592)
..++..+.+.+....+..+++.+...+. .+...++.++..|++.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~ 54 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHH
Confidence 3455555555566666666666655542 4555566666666554
No 235
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=93.05 E-value=1.4 Score=46.13 Aligned_cols=63 Identities=13% Similarity=0.101 Sum_probs=31.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCCchHHHHHHHHHHH
Q 007695 291 DIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDK----KVYNSMIMAYVNAGQPKLGMSLVDMMIT 355 (592)
Q Consensus 291 d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~----~t~~~li~a~~~~g~~~~A~~l~~~m~~ 355 (592)
+...|+.+..+|.+.|++++|...|++..+. .|+. .+|..+..+|...|+.++|+..+++.++
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4444555555555555555555555554443 2332 2355555555555555555555555544
No 236
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=92.84 E-value=1.7 Score=44.59 Aligned_cols=90 Identities=13% Similarity=0.070 Sum_probs=44.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHC-----CCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 007695 265 DAHAKENCLEDAERILKKMNEN-----GIVP---------DIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVY 330 (592)
Q Consensus 265 ~~~~~~g~~~~A~~l~~~m~~~-----g~~p---------d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~ 330 (592)
..|.+.|++..|...|++.... +.++ -..+++.|..+|.+.+++..|++.-+..+..+ ++|+-..
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 4577888899998888886542 1111 11233444444444444444444444444433 3344444
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHH
Q 007695 331 NSMIMAYVNAGQPKLGMSLVDMMIT 355 (592)
Q Consensus 331 ~~li~a~~~~g~~~~A~~l~~~m~~ 355 (592)
.--..+|...|+++.|...|+++++
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHH
Confidence 4444444444444444444444443
No 237
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=92.79 E-value=7.7 Score=35.55 Aligned_cols=189 Identities=17% Similarity=0.083 Sum_probs=83.2
Q ss_pred CCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCchHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 007695 306 GNLDRAKEAFESLRSHGFQ-PDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS-GIERSEEIYLALLRSFAQCGDVRGAGQ 383 (592)
Q Consensus 306 g~~~~A~~~~~~m~~~g~~-pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~Ll~~~~~~g~~~~A~~ 383 (592)
+....+...+......... .....+......+...+....+...+...... ........+......+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4444455555544433211 02345555555555566666665555555431 122334444455555555555555555
Q ss_pred HHHHHHHcCCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007695 384 ITNIMRIEEFQPTLESCTLLVE-AYGQAGDPDQARSNFDYMIRLGH--KPDDRCTASMIAAYGKKNLLDKALNLLLELEK 460 (592)
Q Consensus 384 ~~~~m~~~g~~~~~~~~~~Li~-~~~~~g~~~~A~~lf~~m~~~g~--~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~ 460 (592)
.+.........+ ......... .+...|+++.|...|.+...... ......+......+...++.+.+...+.....
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 555555433111 111222222 45555555555555555533111 01122222222233444555555555555444
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007695 461 DGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495 (592)
Q Consensus 461 ~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 495 (592)
.........+..+...+...+.++.+...+.....
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 230 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALE 230 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHh
Confidence 21110234444444444444445555555444443
No 238
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.67 E-value=3.3 Score=44.11 Aligned_cols=156 Identities=12% Similarity=0.118 Sum_probs=82.3
Q ss_pred HHHHHcCCHHHHHHHHHH--HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 007695 265 DAHAKENCLEDAERILKK--MNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQ 342 (592)
Q Consensus 265 ~~~~~~g~~~~A~~l~~~--m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~ 342 (592)
....-+++++.+.++... +.. .+ ...-.+.++..+-+.|..+.|+++-..-. .-.....+.|+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~ 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGN 333 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-
T ss_pred HHHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCC
Confidence 344456777777666641 111 11 24446667777777777777766643322 23444456677
Q ss_pred chHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007695 343 PKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDY 422 (592)
Q Consensus 343 ~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~ 422 (592)
++.|.++.++. .+...|..|.....+.|+++-|.+.|.+... |..|+-.|.-.|+.+.-.++-+.
T Consensus 334 L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~ 398 (443)
T PF04053_consen 334 LDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKI 398 (443)
T ss_dssp HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHH
Confidence 77766554332 2566777777777777777777777765442 34555566666776666666655
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007695 423 MIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456 (592)
Q Consensus 423 m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~ 456 (592)
....|- ++....++...|+.++..+++.
T Consensus 399 a~~~~~------~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 399 AEERGD------INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHTT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHccC------HHHHHHHHHHcCCHHHHHHHHH
Confidence 554432 4445555566677766666554
No 239
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=92.40 E-value=2.2 Score=43.71 Aligned_cols=140 Identities=14% Similarity=0.148 Sum_probs=90.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC
Q 007695 298 LVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGD 377 (592)
Q Consensus 298 Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~ 377 (592)
-.+.|.+.|++..|...|++.... -. |.+.-+.++... .... -..+++.|.-+|.+.++
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~--l~-----------~~~~~~~ee~~~-~~~~-------k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSF--LE-----------YRRSFDEEEQKK-AEAL-------KLACHLNLAACYLKLKE 272 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHH--hh-----------ccccCCHHHHHH-HHHH-------HHHHhhHHHHHHHhhhh
Confidence 345778999999999999886632 00 001111111111 1111 23466777788888888
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCC-HHHHHHHH
Q 007695 378 VRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGK-KNL-LDKALNLL 455 (592)
Q Consensus 378 ~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~-~g~-~~~A~~l~ 455 (592)
+..|....+.....+ +.|+...-.-..+|...|+++.|+..|+++.+. .|+...-+.=|..|.+ ... .+...++|
T Consensus 273 ~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y 349 (397)
T KOG0543|consen 273 YKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMY 349 (397)
T ss_pred HHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888777 778888888888888888888888888888874 4555555444444433 233 33446777
Q ss_pred HHHHHC
Q 007695 456 LELEKD 461 (592)
Q Consensus 456 ~~m~~~ 461 (592)
..|...
T Consensus 350 ~~mF~k 355 (397)
T KOG0543|consen 350 ANMFAK 355 (397)
T ss_pred HHHhhc
Confidence 777653
No 240
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=92.18 E-value=7.1 Score=33.72 Aligned_cols=64 Identities=14% Similarity=0.175 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 007695 468 ATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKK 532 (592)
Q Consensus 468 ~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~ 532 (592)
..+...++.+...|+-+.-.++++.+.+ .-.+++.....+..+|.+.|+..++..++.+.-++|
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3344445556666666666666666654 234466666666666666666666666666665554
No 241
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=91.93 E-value=12 Score=39.79 Aligned_cols=63 Identities=11% Similarity=0.028 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007695 468 ATYTVLVDWLGRLQLINEAEQLLGKISELGE-APPFKIQVSLCDMYARAGIEKKALQALGFLEA 530 (592)
Q Consensus 468 ~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~ 530 (592)
.+-..+..++-+.|+.++|.+.++++.+... ..+..+...|+.++...+.+.++..++.+-.+
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 3334455666677777777777777765322 22445666777777777777777777776643
No 242
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.77 E-value=9.9 Score=34.51 Aligned_cols=133 Identities=14% Similarity=0.043 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHH-
Q 007695 398 ESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP-DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPAT-YTVLV- 474 (592)
Q Consensus 398 ~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~p-d~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t-y~~li- 474 (592)
..|..-++ +.+.+..++|+.-|.++.+.|..- ..-.-..+.....+.|+...|...|++.-...-.|-..- ...|-
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlra 138 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRA 138 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHH
Confidence 34443333 345566777777777777765431 111222233445667777777777777766544443321 11111
Q ss_pred -HHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 007695 475 -DWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAK 531 (592)
Q Consensus 475 -~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~ 531 (592)
-.+...|.+++...-.+-+...+-..-...-.+|.-+-.+.|++.+|...|..+...
T Consensus 139 a~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 139 AYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 123556777776666665554433333344456666666778888888887777653
No 243
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=91.35 E-value=21 Score=37.39 Aligned_cols=141 Identities=11% Similarity=0.148 Sum_probs=86.9
Q ss_pred HHHHhh-cCC-CHhhHHHHHHHH-HhhCHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 007695 212 AEWKEL-LQP-SRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGI 288 (592)
Q Consensus 212 ~~~~~~-~~p-~~~t~~~lL~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~ 288 (592)
++-+++ ..| |..+|-.|+.-+ .++.++...+..+++... ++--..+|..-|++-...+++.....+|.+.....+
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p--fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l 107 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSP--FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL 107 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC--CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc
Confidence 444444 244 567799999988 666677777777777644 344445677788887888999999999999887644
Q ss_pred CCCHHHHHHHHHHHHHcCCH------HHHHHHHHHHHh-CCCCCC-HHHHHHHHHHHH---HcCCc------hHHHHHHH
Q 007695 289 VPDIVTSTVLVHMYSKAGNL------DRAKEAFESLRS-HGFQPD-KKVYNSMIMAYV---NAGQP------KLGMSLVD 351 (592)
Q Consensus 289 ~pd~~~~~~Li~~~~~~g~~------~~A~~~~~~m~~-~g~~pd-~~t~~~li~a~~---~~g~~------~~A~~l~~ 351 (592)
+...|..-+..-.+.... ....+.|+-... .++.|- ...|+..+..+- ..|.+ +.....|.
T Consensus 108 --~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ 185 (660)
T COG5107 108 --NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYM 185 (660)
T ss_pred --cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 466677777655544321 123344444432 344443 345555554442 23443 45666777
Q ss_pred HHHHC
Q 007695 352 MMITS 356 (592)
Q Consensus 352 ~m~~~ 356 (592)
+|+..
T Consensus 186 ral~t 190 (660)
T COG5107 186 RALQT 190 (660)
T ss_pred HHHcC
Confidence 77653
No 244
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=91.05 E-value=6.9 Score=33.71 Aligned_cols=90 Identities=14% Similarity=0.124 Sum_probs=46.8
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhCCCH
Q 007695 302 YSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSE---EIYLALLRSFAQCGDV 378 (592)
Q Consensus 302 ~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~---~t~~~Ll~~~~~~g~~ 378 (592)
.+..|+++.|++.|.+....- +-+...||.-..++.-.|+.++|++=+.+.++..-.-+. ..|..-...|...|+.
T Consensus 53 laE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 345566666666666555432 334556666666666666666666555555542111121 2233333445556666
Q ss_pred HHHHHHHHHHHHcC
Q 007695 379 RGAGQITNIMRIEE 392 (592)
Q Consensus 379 ~~A~~~~~~m~~~g 392 (592)
+.|..=|...-+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 66666666555554
No 245
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=90.90 E-value=12 Score=40.35 Aligned_cols=179 Identities=11% Similarity=-0.000 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCC-----HHHHHHHHHHHHH----cCCch
Q 007695 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHG-FQPD-----KKVYNSMIMAYVN----AGQPK 344 (592)
Q Consensus 275 ~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g-~~pd-----~~t~~~li~a~~~----~g~~~ 344 (592)
-..-+|.-+... +||. +..++....-.||-+.+++.+.+..+.+ +.-. .-.|+.++..++. ....+
T Consensus 175 ~G~G~f~L~lSl-LPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~ 250 (468)
T PF10300_consen 175 FGFGLFNLVLSL-LPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLE 250 (468)
T ss_pred HHHHHHHHHHHh-CCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHH
Confidence 334455555543 3333 2345556666677777777766655422 1111 1234444443333 34556
Q ss_pred HHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhCCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 007695 345 LGMSLVDMMITSGIERSEEIYL-ALLRSFAQCGDVRGAGQITNIMRIEE---FQPTLESCTLLVEAYGQAGDPDQARSNF 420 (592)
Q Consensus 345 ~A~~l~~~m~~~g~~p~~~t~~-~Ll~~~~~~g~~~~A~~~~~~m~~~g---~~~~~~~~~~Li~~~~~~g~~~~A~~lf 420 (592)
.|.+++..+... -|+...|. .-.+.+...|++++|.+.|+...... -+.....+--+.-.+.-..++++|...|
T Consensus 251 ~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f 328 (468)
T PF10300_consen 251 EAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYF 328 (468)
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHH
Confidence 777777777764 34444433 33455666777888887777544211 0223445555666777788888888888
Q ss_pred HHHHHcCCCCCHHHHHHHHH-HHHhcCCH-------HHHHHHHHHHHH
Q 007695 421 DYMIRLGHKPDDRCTASMIA-AYGKKNLL-------DKALNLLLELEK 460 (592)
Q Consensus 421 ~~m~~~g~~pd~~t~~~li~-a~~~~g~~-------~~A~~l~~~m~~ 460 (592)
..+.+..- -+..+|.-+.. ++...|+. ++|..+|.+...
T Consensus 329 ~~L~~~s~-WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 329 LRLLKESK-WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhccc-cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 88887432 23334443333 33455666 788888877643
No 246
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.84 E-value=16 Score=35.14 Aligned_cols=55 Identities=15% Similarity=0.077 Sum_probs=27.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 007695 470 YTVLVDWLGRLQLINEAEQLLGKISELG---EAPPFKIQVSLCDMYARAGIEKKALQAL 525 (592)
Q Consensus 470 y~~li~~~~~~g~~~~A~~l~~~m~~~g---~~p~~~~~~~Li~~~~~~g~~~~A~~~~ 525 (592)
|...|-.+....++..|...++.-...+ -.-+..+...|+.+| ..|+.+++.+++
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 3344444445556666666665532221 112445555666555 455666655553
No 247
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=90.70 E-value=12 Score=39.63 Aligned_cols=164 Identities=15% Similarity=0.128 Sum_probs=92.1
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007695 408 GQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487 (592)
Q Consensus 408 ~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~ 487 (592)
.+..+...-.+.-.+..+ +.||-.+.- ++-+--...-..+|.++|++..+.|- ..+ .+.......-
T Consensus 179 WRERnp~aRIkaA~eALe--i~pdCAdAY-ILLAEEeA~Ti~Eae~l~rqAvkAgE----~~l-------g~s~~~~~~g 244 (539)
T PF04184_consen 179 WRERNPQARIKAAKEALE--INPDCADAY-ILLAEEEASTIVEAEELLRQAVKAGE----ASL-------GKSQFLQHHG 244 (539)
T ss_pred HhcCCHHHHHHHHHHHHH--hhhhhhHHH-hhcccccccCHHHHHHHHHHHHHHHH----Hhh-------chhhhhhccc
Confidence 344444444444444443 234433222 22233344557888888888766431 111 0100001111
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 007695 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQM-GPDDFERIINGLLAGGFLQDAQRVHGLMEAQ 566 (592)
Q Consensus 488 ~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~ 566 (592)
..++........|-..+-..|..++.+.|+.++|.+.+++|.+..... +......|+.++...+.+.++..++.+-.+-
T Consensus 245 ~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 245 HFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred chhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 122222233333334455568888889999999999999997643222 3345677999999999999999999987654
Q ss_pred CCCCCH--HHHHHHHhhhhhc
Q 007695 567 GFAASE--RLKVALISSQTFN 585 (592)
Q Consensus 567 g~~pd~--~~~~~l~~~~~~~ 585 (592)
....+. .+..+|+.+...+
T Consensus 325 ~lpkSAti~YTaALLkaRav~ 345 (539)
T PF04184_consen 325 SLPKSATICYTAALLKARAVG 345 (539)
T ss_pred cCCchHHHHHHHHHHHHHhhc
Confidence 444445 4444555544443
No 248
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=90.24 E-value=14 Score=33.66 Aligned_cols=224 Identities=17% Similarity=0.061 Sum_probs=138.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCchHHH
Q 007695 270 ENCLEDAERILKKMNENGIVP-DIVTSTVLVHMYSKAGNLDRAKEAFESLRSH-GFQPDKKVYNSMIMAYVNAGQPKLGM 347 (592)
Q Consensus 270 ~g~~~~A~~l~~~m~~~g~~p-d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~-g~~pd~~t~~~li~a~~~~g~~~~A~ 347 (592)
.+.+..+...+.......... ....+......+...+.+..+...+...... ........+......+...++...+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 456666666666666543221 3566777777788888888888877777642 22445566667777777777788888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007695 348 SLVDMMITSGIERSEEIYLALLR-SFAQCGDVRGAGQITNIMRIEEF--QPTLESCTLLVEAYGQAGDPDQARSNFDYMI 424 (592)
Q Consensus 348 ~l~~~m~~~g~~p~~~t~~~Ll~-~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~ 424 (592)
..+.........+ ......... .+...|+++.+...+........ ......+......+...++.+.+...+....
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 8888777654332 222223333 67788888888888888754221 1233444445555667788888888888877
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007695 425 RLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPG-PATYTVLVDWLGRLQLINEAEQLLGKISEL 496 (592)
Q Consensus 425 ~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 496 (592)
..........+..+-..+...++++.|...+....... |+ ...+..+...+...+..+.+...+......
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 195 KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD--PDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC--cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 74222135666667777777788888888887776632 32 233333333333555566666666655543
No 249
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.24 E-value=18 Score=34.79 Aligned_cols=205 Identities=17% Similarity=0.143 Sum_probs=103.6
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 007695 330 YNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQ 409 (592)
Q Consensus 330 ~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~ 409 (592)
|.--..+|....++++|...+.+..+. ..-|...|.+ ...++.|.-+.+++... +--+..|+--..+|..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-------AKayEqaamLake~~kl--sEvvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-------AKAYEQAAMLAKELSKL--SEVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHH
Confidence 334444555566666666655554421 1112211111 12234444444444432 1123455666677777
Q ss_pred cCCHHHHHHHHHHHHH--cCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 007695 410 AGDPDQARSNFDYMIR--LGHKPDD--RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINE 485 (592)
Q Consensus 410 ~g~~~~A~~lf~~m~~--~g~~pd~--~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~ 485 (592)
+|.++.|-..+++.-+ .+..|+. ..|..-+......++...|.. .|..+-+.+.+...+++
T Consensus 104 ~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~e---------------l~gk~sr~lVrl~kf~E 168 (308)
T KOG1585|consen 104 CGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFE---------------LYGKCSRVLVRLEKFTE 168 (308)
T ss_pred hCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHH---------------HHHHhhhHhhhhHHhhH
Confidence 7777777666665443 1233332 122222222222333333333 33444455666667766
Q ss_pred HHHHHHHHHhc----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhCCCHHHHH
Q 007695 486 AEQLLGKISEL----GEAPP-FKIQVSLCDMYARAGIEKKALQALGFLEAKKE---QMGPDDFERIINGLLAGGFLQDAQ 557 (592)
Q Consensus 486 A~~l~~~m~~~----g~~p~-~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~---~~~~~~~~~li~a~~~~g~~~~A~ 557 (592)
|-..+.+-... .-.++ ...|...|-.|.-..++..|.+.++.--+.+. .-+..+...|+.+|- .|+.+++.
T Consensus 169 aa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~ 247 (308)
T KOG1585|consen 169 AATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIK 247 (308)
T ss_pred HHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHH
Confidence 66555443211 11122 24566667777778899999999987444322 223446777888874 56777665
Q ss_pred HHH
Q 007695 558 RVH 560 (592)
Q Consensus 558 ~l~ 560 (592)
+++
T Consensus 248 kvl 250 (308)
T KOG1585|consen 248 KVL 250 (308)
T ss_pred HHH
Confidence 543
No 250
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.15 E-value=3.3 Score=40.88 Aligned_cols=77 Identities=18% Similarity=0.159 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----CCCCCCHHHHHHH
Q 007695 259 DYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRS-----HGFQPDKKVYNSM 333 (592)
Q Consensus 259 ~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~-----~g~~pd~~t~~~l 333 (592)
++..++..+...|+++.+...++.+..... -|...|..+|.+|.+.|+...|+..|+++.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp-~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDP-YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 566677777777777777777777777632 3677777777777777777777777777654 4666666665555
Q ss_pred HHH
Q 007695 334 IMA 336 (592)
Q Consensus 334 i~a 336 (592)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 544
No 251
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.93 E-value=6.8 Score=39.24 Aligned_cols=155 Identities=12% Similarity=-0.042 Sum_probs=96.1
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCCc
Q 007695 268 AKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDK----KVYNSMIMAYVNAGQP 343 (592)
Q Consensus 268 ~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~----~t~~~li~a~~~~g~~ 343 (592)
.-+|++.+|...++++.+. .+.|...+...=.+|.-.|+...-...+++..-.- .+|. .....+.-++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w-n~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW-NADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc-CCCCcHHHHHHHHHHhhHHHhccc
Confidence 4467777777778777765 45577777777778888888888777777776331 2333 2223333445567888
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHH
Q 007695 344 KLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT---LESCTLLVEAYGQAGDPDQARSNF 420 (592)
Q Consensus 344 ~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~Li~~~~~~g~~~~A~~lf 420 (592)
++|++.-++..+.+ +-|.....++...+--.|+..++.++..+-...=-..+ ..-|=...-.+...+.++.|+.+|
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 88888877777654 33666677777777777888887776655432100000 111222233445567788888888
Q ss_pred HHHHH
Q 007695 421 DYMIR 425 (592)
Q Consensus 421 ~~m~~ 425 (592)
+.-.-
T Consensus 271 D~ei~ 275 (491)
T KOG2610|consen 271 DREIW 275 (491)
T ss_pred HHHHH
Confidence 75443
No 252
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.72 E-value=8.1 Score=38.70 Aligned_cols=152 Identities=10% Similarity=-0.090 Sum_probs=96.0
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHHHH--HHHHHHhcCCHH
Q 007695 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD--RCTAS--MIAAYGKKNLLD 449 (592)
Q Consensus 374 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~--~t~~~--li~a~~~~g~~~ 449 (592)
-.|+..+|-..++++.+.- |.|..+++-.-.+|.-.|+.+.-...++++... -.+|. .+|.. ..-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 4566677777777777553 677888888888888888888888888887763 12333 23322 223445678888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007695 450 KALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA---PPFKIQVSLCDMYARAGIEKKALQALG 526 (592)
Q Consensus 450 ~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~---p~~~~~~~Li~~~~~~g~~~~A~~~~~ 526 (592)
+|.+.-++..+-+ +.|...-.++...+...|+..++.++..+-...--. .-..-|=...-.+...+.++.|+.+|+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 8888887766543 345556666777777888888888877654432100 011112223334555678888888887
Q ss_pred HH
Q 007695 527 FL 528 (592)
Q Consensus 527 ~m 528 (592)
.-
T Consensus 272 ~e 273 (491)
T KOG2610|consen 272 RE 273 (491)
T ss_pred HH
Confidence 53
No 253
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.71 E-value=23 Score=35.14 Aligned_cols=144 Identities=9% Similarity=0.148 Sum_probs=80.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH
Q 007695 299 VHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378 (592)
Q Consensus 299 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~ 378 (592)
.......|++.+|..+|....... +-+...--.+..+|...|+.+.|..++..+....-.........-|..+.+....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 345567788888888888777553 3344566677777888888888888877765432221222222334444444444
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcC
Q 007695 379 RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL--GHKPDDRCTASMIAAYGKKN 446 (592)
Q Consensus 379 ~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~--g~~pd~~t~~~li~a~~~~g 446 (592)
.+...+-...-.. +-|...-..+...|...|+.+.|.+.+-.+... |.. |...-..++..+.-.|
T Consensus 220 ~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g 286 (304)
T COG3118 220 PEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFG 286 (304)
T ss_pred CCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcC
Confidence 4444444333322 235666666667777777777776666555442 222 4444444555444444
No 254
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=89.55 E-value=7.2 Score=34.29 Aligned_cols=82 Identities=15% Similarity=-0.003 Sum_probs=44.6
Q ss_pred hhHHHHHHHHHhhCHHHHHHHHHHHhhhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007695 223 IDWINLLDRLREQNTQLYFKVAELVLSEESFQT-NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHM 301 (592)
Q Consensus 223 ~t~~~lL~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~ 301 (592)
.-|+.-..++..++...+.+.++.+..+..+.+ ...+.-.|+.+|.+.++++.|...+++..+....---.-|-..+.+
T Consensus 12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~g 91 (142)
T PF13512_consen 12 ELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRG 91 (142)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHH
Confidence 334444555555666666666666655544433 2334556667777777777777777777665433222334444444
Q ss_pred HHH
Q 007695 302 YSK 304 (592)
Q Consensus 302 ~~~ 304 (592)
++.
T Consensus 92 L~~ 94 (142)
T PF13512_consen 92 LSY 94 (142)
T ss_pred HHH
Confidence 443
No 255
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.23 E-value=5.7 Score=38.73 Aligned_cols=26 Identities=19% Similarity=0.102 Sum_probs=11.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007695 505 QVSLCDMYARAGIEKKALQALGFLEA 530 (592)
Q Consensus 505 ~~~Li~~~~~~g~~~~A~~~~~~m~~ 530 (592)
+--|.....+.|+.++|..+|+++.+
T Consensus 218 llKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 218 LLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 33334444444444444444444443
No 256
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=89.13 E-value=36 Score=36.70 Aligned_cols=163 Identities=19% Similarity=0.146 Sum_probs=107.9
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHCC-CCCCH-----HHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCCHHH
Q 007695 330 YNSMIMAYVNAGQPKLGMSLVDMMITSG-IERSE-----EIYLALLRSFAQ----CGDVRGAGQITNIMRIEEFQPTLES 399 (592)
Q Consensus 330 ~~~li~a~~~~g~~~~A~~l~~~m~~~g-~~p~~-----~t~~~Ll~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~ 399 (592)
+..+++...=.|+-+.+++.+.+..+.+ +.-.. -+|...+..++. ..+.+.|.+++..+... -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 3455566666788899999888876643 22111 224444444433 45688899999999977 467665
Q ss_pred HHH-HHHHHHHcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007695 400 CTL-LVEAYGQAGDPDQARSNFDYMIRLG---HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475 (592)
Q Consensus 400 ~~~-Li~~~~~~g~~~~A~~lf~~m~~~g---~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~ 475 (592)
|.. -...+...|++++|.+.|+...... .+.....+--+.-.+...+++++|...|..+.+.+ .-+..+|..+..
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHH
Confidence 544 3566778999999999999765421 11233445556777888999999999999998864 223445554443
Q ss_pred -HHHHcCCH-------HHHHHHHHHHHh
Q 007695 476 -WLGRLQLI-------NEAEQLLGKISE 495 (592)
Q Consensus 476 -~~~~~g~~-------~~A~~l~~~m~~ 495 (592)
++...++. ++|..++.++..
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 33456766 788888887653
No 257
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.54 E-value=33 Score=37.90 Aligned_cols=17 Identities=12% Similarity=0.032 Sum_probs=9.0
Q ss_pred hCCCHHHHHHHHHHHHH
Q 007695 374 QCGDVRGAGQITNIMRI 390 (592)
Q Consensus 374 ~~g~~~~A~~~~~~m~~ 390 (592)
...+.+.|...|+....
T Consensus 261 ~~~d~e~a~~~l~~aa~ 277 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAE 277 (552)
T ss_pred ccccHHHHHHHHHHHHH
Confidence 33455555555555544
No 258
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.45 E-value=7.5 Score=38.60 Aligned_cols=104 Identities=18% Similarity=0.217 Sum_probs=64.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHH
Q 007695 287 GIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHG---FQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEE 363 (592)
Q Consensus 287 g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g---~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ 363 (592)
|.+....+...++..-....+++.+...+-++...- ..|+. +-.+.++.+. .-++++++.++..=++.|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 444455555666666666667777777776665421 11221 1122233332 235667777777777778888888
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 007695 364 IYLALLRSFAQCGDVRGAGQITNIMRIEE 392 (592)
Q Consensus 364 t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g 392 (592)
+++.+|+.+.+.+++.+|.++.-.|....
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 88888888888888888777777666543
No 259
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.32 E-value=45 Score=36.83 Aligned_cols=275 Identities=16% Similarity=0.108 Sum_probs=153.5
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHH----H-HHHcCCHHHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHHHc
Q 007695 273 LEDAERILKKMNENGIVPDIVTSTVLVH----M-YSKAGNLDRAKEAFESLRS-------HGFQPDKKVYNSMIMAYVNA 340 (592)
Q Consensus 273 ~~~A~~l~~~m~~~g~~pd~~~~~~Li~----~-~~~~g~~~~A~~~~~~m~~-------~g~~pd~~t~~~li~a~~~~ 340 (592)
...|.+.++...+.| +...-..+.. + +....|.+.|...|....+ .| +....+-+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 467888888888876 3333322222 2 4466789999999998876 44 334666777777764
Q ss_pred C-----CchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HcCC
Q 007695 341 G-----QPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ-CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYG--QAGD 412 (592)
Q Consensus 341 g-----~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~-~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~--~~g~ 412 (592)
. +...|+.++...-+.|. |+...+...+..... ..+...|.++|...-..| .+...-+.+++.... -..+
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G-~~~A~~~la~~y~~G~gv~r~ 379 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG-HILAIYRLALCYELGLGVERN 379 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhCCCcCCC
Confidence 3 55679999998888773 344443333333333 246789999999999888 333333322222222 3347
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HH-----HH--cCCHH
Q 007695 413 PDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD-WL-----GR--LQLIN 484 (592)
Q Consensus 413 ~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~-~~-----~~--~g~~~ 484 (592)
...|...+.+.-..| .|....-...+..+.. +.++.+.-.+..+.+.|... ..+-...+. .. .. ..+..
T Consensus 380 ~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~-~q~~a~~l~~~~~~~~~~~~~~~~~~ 456 (552)
T KOG1550|consen 380 LELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEV-AQSNAAYLLDQSEEDLFSRGVISTLE 456 (552)
T ss_pred HHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhH-HhhHHHHHHHhccccccccccccchh
Confidence 889999999988877 3332222233444444 77777777777776655321 111111111 10 00 12445
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----HhCCCHHHH
Q 007695 485 EAEQLLGKISELGEAPPFKIQVSLCDMYARA----GIEKKALQALGFLEAKKEQMGPDDFERIINGL----LAGGFLQDA 556 (592)
Q Consensus 485 ~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~----g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~----~~~g~~~~A 556 (592)
.+...+.+....| +......|-+.|... .+.+.|...+......+ ....|| +...+ .... +..|
T Consensus 457 ~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~n-lg~~~e~g~g~~~-~~~a 528 (552)
T KOG1550|consen 457 RAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFN-LGYMHEHGEGIKV-LHLA 528 (552)
T ss_pred HHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhh-hhhHHhcCcCcch-hHHH
Confidence 5555555555444 444555555554432 24666666666655543 222333 11111 1122 5666
Q ss_pred HHHHHHHHHC
Q 007695 557 QRVHGLMEAQ 566 (592)
Q Consensus 557 ~~l~~~m~~~ 566 (592)
.+++++..+.
T Consensus 529 ~~~~~~~~~~ 538 (552)
T KOG1550|consen 529 KRYYDQASEE 538 (552)
T ss_pred HHHHHHHHhc
Confidence 6666666544
No 260
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=88.22 E-value=34 Score=35.26 Aligned_cols=283 Identities=16% Similarity=0.106 Sum_probs=184.6
Q ss_pred ccCCchhHHHHHHhh---cCCCHhhHHHHHHHH---HhhCHHHHHHHHHHHhhhCCCCCCHHH--HHHHHHHHHHcCCHH
Q 007695 203 KEEDPSPLLAEWKEL---LQPSRIDWINLLDRL---REQNTQLYFKVAELVLSEESFQTNVRD--YSKLIDAHAKENCLE 274 (592)
Q Consensus 203 ~~g~~~~A~~~~~~~---~~p~~~t~~~lL~~~---~~~~~~~~~~~~~~~~~~~~~~p~~~~--y~~Li~~~~~~g~~~ 274 (592)
-.|+-..|+++-.+. +..|......||.+- ..|+.+.+.+-++.|+.. |.... ...|.-..-+.|..+
T Consensus 96 gAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d----PEtRllGLRgLyleAqr~Gare 171 (531)
T COG3898 96 GAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD----PETRLLGLRGLYLEAQRLGARE 171 (531)
T ss_pred ccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC----hHHHHHhHHHHHHHHHhcccHH
Confidence 678888888887653 556666666677654 567888888888887642 33222 344444455688889
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHH--HHHHHHHHHH---HcCCchHHH
Q 007695 275 DAERILKKMNENGIVP-DIVTSTVLVHMYSKAGNLDRAKEAFESLRSH-GFQPDKK--VYNSMIMAYV---NAGQPKLGM 347 (592)
Q Consensus 275 ~A~~l~~~m~~~g~~p-d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~-g~~pd~~--t~~~li~a~~---~~g~~~~A~ 347 (592)
.|.++-+..-.. .| -...+...+...|..|+++.|+++.+.-+.. -+.++.. .-..|+.+-. -..+...|.
T Consensus 172 aAr~yAe~Aa~~--Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar 249 (531)
T COG3898 172 AARHYAERAAEK--APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASAR 249 (531)
T ss_pred HHHHHHHHHHhh--ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHH
Confidence 888888877654 33 3556788999999999999999999887643 2344432 1222332221 123455666
Q ss_pred HHHHHHHHCCCCCCHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Q 007695 348 SLVDMMITSGIERSEE-IYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR- 425 (592)
Q Consensus 348 ~l~~~m~~~g~~p~~~-t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~- 425 (592)
..-.+..+ +.||-. .-.....++.+.|++.++-.+++.+-+..-.|+ .+. +..+.+.|+ .+..-++...+
T Consensus 250 ~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia~--lY~~ar~gd--ta~dRlkRa~~L 321 (531)
T COG3898 250 DDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--IAL--LYVRARSGD--TALDRLKRAKKL 321 (531)
T ss_pred HHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HHH--HHHHhcCCC--cHHHHHHHHHHH
Confidence 65555544 445533 233456788999999999999999988754444 322 223344554 34444443333
Q ss_pred cCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCCC
Q 007695 426 LGHKP-DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRL-QLINEAEQLLGKISELGEAPP 501 (592)
Q Consensus 426 ~g~~p-d~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~ 501 (592)
...+| +..+...+..+-...|++..|..--+.... ..|....|..|.+.-.-. |+-.++.+.+.+..+..-.|.
T Consensus 322 ~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPa 397 (531)
T COG3898 322 ESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPA 397 (531)
T ss_pred HhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCc
Confidence 12344 445666677788888999888776665544 578888888888766544 999999999999887655554
No 261
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.22 E-value=7.8 Score=37.77 Aligned_cols=97 Identities=21% Similarity=0.162 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CC-CHHHHHHHH
Q 007695 364 IYLALLRSFAQCGDVRGAGQITNIMRIEEF--QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGH-KP-DDRCTASMI 439 (592)
Q Consensus 364 t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~-~p-d~~t~~~li 439 (592)
.|+..+..| +.|++..|...|....+..- .-....+-.|..++...|+++.|..+|..+.+.-+ .| -..++--+.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 455555444 44557777777776665531 11234455567777777777777777766665321 11 123444455
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 007695 440 AAYGKKNLLDKALNLLLELEKD 461 (592)
Q Consensus 440 ~a~~~~g~~~~A~~l~~~m~~~ 461 (592)
.+....|+.++|...|+++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 5566666666666666666553
No 262
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.87 E-value=7 Score=43.75 Aligned_cols=243 Identities=14% Similarity=0.052 Sum_probs=136.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH----HHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007695 295 STVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI----MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370 (592)
Q Consensus 295 ~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li----~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~ 370 (592)
...-+....+...++-|..+-+.-. .+..+...+. +-+.+.|++++|...|-+.+.. +.|. .++.
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~-----~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~ 405 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQH-----LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIK 405 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHH
Confidence 3456667777777777776654322 2333433444 3445678888888877766543 3332 3455
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHH
Q 007695 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK-PDDRCTASMIAAYGKKNLLD 449 (592)
Q Consensus 371 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~-pd~~t~~~li~a~~~~g~~~ 449 (592)
-|....++..-..+++.+.+.|+ .+...-+.|+.+|.+.++.++-.++.+... .|.. .| ....+..|.+.+-.+
T Consensus 406 kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd---~e~al~Ilr~snyl~ 480 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFD---VETALEILRKSNYLD 480 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccceeee---HHHHHHHHHHhChHH
Confidence 56666667777778888888884 456666888899999998888777766554 2321 12 334566677777777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007695 450 KALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLE 529 (592)
Q Consensus 450 ~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~ 529 (592)
+|..+-..... +......+ +-..+++++|.+.+..+.-...- .+.+....-+. ....++-..++-+..
T Consensus 481 ~a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~slp~~e~l---~~l~kyGk~Ll-~h~P~~t~~ili~~~ 548 (933)
T KOG2114|consen 481 EAELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSLPISELL---RTLNKYGKILL-EHDPEETMKILIELI 548 (933)
T ss_pred HHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcCCHHHHH---HHHHHHHHHHH-hhChHHHHHHHHHHH
Confidence 77766654422 33333333 45677888888888766321111 11111111121 234555555544443
Q ss_pred HcCCCCCHHHHHHH-----HHHHHhCCCHHHHHHHHHHHHH
Q 007695 530 AKKEQMGPDDFERI-----INGLLAGGFLQDAQRVHGLMEA 565 (592)
Q Consensus 530 ~~~~~~~~~~~~~l-----i~a~~~~g~~~~A~~l~~~m~~ 565 (592)
.....++....... -....-.++++.-...++.|.+
T Consensus 549 t~~~~~~~~~~~s~~~~~~~~i~if~~~~~~~~~Fl~~~~E 589 (933)
T KOG2114|consen 549 TELNSQGKGKSLSNIPDSIEFIGIFSQNYQILLNFLESMSE 589 (933)
T ss_pred hhcCCCCCCchhhcCccchhheeeeccCHHHHHHHHHHHHh
Confidence 32222222222211 1222445677776667776654
No 263
>PRK11906 transcriptional regulator; Provisional
Probab=87.64 E-value=41 Score=35.59 Aligned_cols=80 Identities=10% Similarity=-0.098 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007695 449 DKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFL 528 (592)
Q Consensus 449 ~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m 528 (592)
.+|.++.+...+.+ .-|+.....+..+....++++.|...|++....+.. ...+|......+.-+|+.++|.+.+++.
T Consensus 321 ~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~a 398 (458)
T PRK11906 321 QKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKS 398 (458)
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444444444433 234444444444445555555566666555554332 3334444444444556666666655554
Q ss_pred HH
Q 007695 529 EA 530 (592)
Q Consensus 529 ~~ 530 (592)
.+
T Consensus 399 lr 400 (458)
T PRK11906 399 LQ 400 (458)
T ss_pred hc
Confidence 43
No 264
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=87.64 E-value=31 Score=34.23 Aligned_cols=163 Identities=9% Similarity=-0.035 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007695 398 ESCTLLVEAYGQAGDPD---QARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474 (592)
Q Consensus 398 ~~~~~Li~~~~~~g~~~---~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li 474 (592)
.+...++.+|...+..+ +|..+++.+...... ....+..-+..+.+.++.+.+.+.+.+|...-.. ....+..++
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-~e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-SESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc-ccchHHHHH
Confidence 34556666776666543 455555555443222 2334444455555677777777777777765211 122333333
Q ss_pred HHH---HHcCCHHHHHHHHHHHHhcCCCCCHH-HHH-HHHHH---HHHcC------CHHHHHHHHHHHHH-cCCCCCHHH
Q 007695 475 DWL---GRLQLINEAEQLLGKISELGEAPPFK-IQV-SLCDM---YARAG------IEKKALQALGFLEA-KKEQMGPDD 539 (592)
Q Consensus 475 ~~~---~~~g~~~~A~~l~~~m~~~g~~p~~~-~~~-~Li~~---~~~~g------~~~~A~~~~~~m~~-~~~~~~~~~ 539 (592)
..+ ... ....+...+..+....+.|... ... .++.- ....+ .++....+++.+.. .+.+.+..+
T Consensus 163 ~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~ 241 (278)
T PF08631_consen 163 HHIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEA 241 (278)
T ss_pred HHHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 333 332 2344555555555444444443 111 11111 11111 14444444553332 223444443
Q ss_pred HHHH-------HHHHHhCCCHHHHHHHHHHH
Q 007695 540 FERI-------INGLLAGGFLQDAQRVHGLM 563 (592)
Q Consensus 540 ~~~l-------i~a~~~~g~~~~A~~l~~~m 563 (592)
-.++ ...+.+.+++++|.+.|+--
T Consensus 242 ~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 242 ASAIHTLLWNKGKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 2222 34566889999999998753
No 265
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=87.55 E-value=1.6 Score=29.60 Aligned_cols=27 Identities=26% Similarity=0.203 Sum_probs=12.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 007695 505 QVSLCDMYARAGIEKKALQALGFLEAK 531 (592)
Q Consensus 505 ~~~Li~~~~~~g~~~~A~~~~~~m~~~ 531 (592)
+..+...|...|++++|.++|+++.+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334444444444444444444444443
No 266
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=86.74 E-value=19 Score=31.62 Aligned_cols=23 Identities=17% Similarity=0.192 Sum_probs=10.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 007695 438 MIAAYGKKNLLDKALNLLLELEK 460 (592)
Q Consensus 438 li~a~~~~g~~~~A~~l~~~m~~ 460 (592)
++.+|.+.+++++|...+++.++
T Consensus 53 l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 53 LAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred HHHHHHHccCHHHHHHHHHHHHH
Confidence 44444444444444444444433
No 267
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=86.63 E-value=2.5 Score=28.64 Aligned_cols=16 Identities=31% Similarity=0.586 Sum_probs=5.7
Q ss_pred HHHcCCHHHHHHHHHH
Q 007695 407 YGQAGDPDQARSNFDY 422 (592)
Q Consensus 407 ~~~~g~~~~A~~lf~~ 422 (592)
|...|++++|.++|++
T Consensus 11 ~~~~G~~~~A~~~~~~ 26 (44)
T PF13428_consen 11 YRRLGQPDEAERLLRR 26 (44)
T ss_pred HHHcCCHHHHHHHHHH
Confidence 3333333333333333
No 268
>PRK11906 transcriptional regulator; Provisional
Probab=86.54 E-value=47 Score=35.16 Aligned_cols=116 Identities=12% Similarity=0.081 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHH-hCCCCCC-HHHHHHHHHHHHH---------cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC
Q 007695 308 LDRAKEAFESLR-SHGFQPD-KKVYNSMIMAYVN---------AGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376 (592)
Q Consensus 308 ~~~A~~~~~~m~-~~g~~pd-~~t~~~li~a~~~---------~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g 376 (592)
.+.|+.+|.+.. ...+.|+ ...|..+..++.. .....+|.++-+...+.+. -|......+..+..-.+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~-~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITT-VDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhhc
Confidence 456677777766 1222333 3333333333221 1123345555566665542 26666666666666666
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007695 377 DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR 425 (592)
Q Consensus 377 ~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~ 425 (592)
+++.|...|++....+ +-...+|......+.-+|+.++|.+.+++..+
T Consensus 353 ~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 353 QAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred chhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 6777777777766553 22345555555555666777777777776554
No 269
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=86.34 E-value=13 Score=36.60 Aligned_cols=122 Identities=11% Similarity=0.135 Sum_probs=77.5
Q ss_pred CCCCHHHHHHHHHHHHH-cC-CHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHH
Q 007695 253 FQTNVRDYSKLIDAHAK-EN-CLEDAERILKKMNE-NGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSH-GFQPDKK 328 (592)
Q Consensus 253 ~~p~~~~y~~Li~~~~~-~g-~~~~A~~l~~~m~~-~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~-g~~pd~~ 328 (592)
+-.|..+...|++.... .+ ....-.++.+.+.. .|-.++..+...++..+++.+++.+-.++++..... +..-|..
T Consensus 160 Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~r 239 (292)
T PF13929_consen 160 IIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPR 239 (292)
T ss_pred eeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCc
Confidence 44566666666666655 22 22333333343332 244567777778888888888888888888776644 4456778
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHH-----HHHCCCCCCHHHHHHHHHHHHh
Q 007695 329 VYNSMIMAYVNAGQPKLGMSLVDM-----MITSGIERSEEIYLALLRSFAQ 374 (592)
Q Consensus 329 t~~~li~a~~~~g~~~~A~~l~~~-----m~~~g~~p~~~t~~~Ll~~~~~ 374 (592)
.|..+|......|+..-...+..+ +...++..+...-..+-..+.+
T Consensus 240 pW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~~ 290 (292)
T PF13929_consen 240 PWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFKK 290 (292)
T ss_pred hHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHHh
Confidence 888888888888887766666554 2344566666666665555543
No 270
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=86.28 E-value=21 Score=30.85 Aligned_cols=92 Identities=20% Similarity=0.145 Sum_probs=67.8
Q ss_pred HHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHHcCC
Q 007695 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL---ESCTLLVEAYGQAGD 412 (592)
Q Consensus 336 a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~---~~~~~Li~~~~~~g~ 412 (592)
+....|+.+.|++.|.+.+.. .+-....||.-.+++.-.|+.++|+.=+++..+..-..+. .+|..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 456788999999999888775 3347788999999998899999988888887765323333 334444566778888
Q ss_pred HHHHHHHHHHHHHcCC
Q 007695 413 PDQARSNFDYMIRLGH 428 (592)
Q Consensus 413 ~~~A~~lf~~m~~~g~ 428 (592)
-+.|..=|+..-+.|-
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 8888888887766553
No 271
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=85.90 E-value=50 Score=34.79 Aligned_cols=275 Identities=15% Similarity=0.135 Sum_probs=144.3
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH--H
Q 007695 267 HAKENCLEDAERILKKMNENGIVPD------IVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY--V 338 (592)
Q Consensus 267 ~~~~g~~~~A~~l~~~m~~~g~~pd------~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~--~ 338 (592)
+-+.+++.+|.++|.+..+.. ..+ ...-+.++++|.. .+.+.....+..+.+. .| ...|-.+..+. -
T Consensus 16 Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAY 90 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHH
Confidence 456788899999998886642 212 2223556666654 3455555555555543 22 23444444433 3
Q ss_pred HcCCchHHHHHHHHHHHC--CCCC------------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC----CCCHHHH
Q 007695 339 NAGQPKLGMSLVDMMITS--GIER------------SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF----QPTLESC 400 (592)
Q Consensus 339 ~~g~~~~A~~l~~~m~~~--g~~p------------~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~----~~~~~~~ 400 (592)
+.+++++|.+.+..-.++ +..| |-..=+..+.++...|++.++..+++++...-+ .-+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 677888888888776654 3222 111124566778889999999988888876543 3688888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007695 401 TLLVEAYGQAGDPDQARSNFDYMIRL---GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477 (592)
Q Consensus 401 ~~Li~~~~~~g~~~~A~~lf~~m~~~---g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~ 477 (592)
+.++-+++++ .|-++++. .+-|| |--+|..|.+.=. .++.-.=..+.|....+..++...
T Consensus 171 d~~vlmlsrS--------YfLEl~e~~s~dl~pd---yYemilfY~kki~------~~d~~~Y~k~~peeeL~s~imqhl 233 (549)
T PF07079_consen 171 DRAVLMLSRS--------YFLELKESMSSDLYPD---YYEMILFYLKKIH------AFDQRPYEKFIPEEELFSTIMQHL 233 (549)
T ss_pred HHHHHHHhHH--------HHHHHHHhcccccChH---HHHHHHHHHHHHH------HHhhchHHhhCcHHHHHHHHHHHH
Confidence 8887777764 44444331 22222 3334444433211 111100012334444444444433
Q ss_pred HHcC--CHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHhC
Q 007695 478 GRLQ--LINEAEQLLGKISELGEAPPFK-IQVSLCDMYARAGIEKKALQALGFLEAKKEQM----GPDDFERIINGLLAG 550 (592)
Q Consensus 478 ~~~g--~~~~A~~l~~~m~~~g~~p~~~-~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~----~~~~~~~li~a~~~~ 550 (592)
.-.. +..--.+++......-+.|+.. +...|...+.+ +.+++..+.+.+......+ =..+|..++....+.
T Consensus 234 fi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~ 311 (549)
T PF07079_consen 234 FIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQ 311 (549)
T ss_pred HhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2211 1222233333333333445543 23344444443 4455555544443321111 123577777777888
Q ss_pred CCHHHHHHHHHHHHH
Q 007695 551 GFLQDAQRVHGLMEA 565 (592)
Q Consensus 551 g~~~~A~~l~~~m~~ 565 (592)
++...|.+.+.-++.
T Consensus 312 ~~T~~a~q~l~lL~~ 326 (549)
T PF07079_consen 312 VQTEEAKQYLALLKI 326 (549)
T ss_pred HhHHHHHHHHHHHHh
Confidence 888888877776654
No 272
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=85.55 E-value=45 Score=33.98 Aligned_cols=54 Identities=24% Similarity=0.312 Sum_probs=35.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007695 263 LIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRS 320 (592)
Q Consensus 263 Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~ 320 (592)
...+..+.|+++...+........ .++...|.++... ..++++++....+....
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~ 57 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQ 57 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHH
Confidence 356777888888866655555432 2355555555544 78888888888777654
No 273
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=85.53 E-value=17 Score=33.40 Aligned_cols=60 Identities=15% Similarity=0.128 Sum_probs=27.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007695 365 YLALLRSFAQCGDVRGAGQITNIMRIEEFQPT--LESCTLLVEAYGQAGDPDQARSNFDYMI 424 (592)
Q Consensus 365 ~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~Li~~~~~~g~~~~A~~lf~~m~ 424 (592)
+..+...|++.|+.+.|.+.|.++...-..+. ...+-.+|....-.+++..+.....+..
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 44444555555555555555555444322221 2333444444444555555544444433
No 274
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=85.50 E-value=10 Score=34.96 Aligned_cols=59 Identities=19% Similarity=0.199 Sum_probs=26.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCchHHHHHHHHH
Q 007695 295 STVLVHMYSKAGNLDRAKEAFESLRSHGFQPD--KKVYNSMIMAYVNAGQPKLGMSLVDMM 353 (592)
Q Consensus 295 ~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~t~~~li~a~~~~g~~~~A~~l~~~m 353 (592)
+..+...|++.|+.+.|.+.|.++......+. ...+-.+|....-.+++..+...+.+.
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 44445555555555555555555444322222 223344444444455555444444443
No 275
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=85.37 E-value=2 Score=27.79 Aligned_cols=26 Identities=8% Similarity=-0.130 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHH
Q 007695 539 DFERIINGLLAGGFLQDAQRVHGLME 564 (592)
Q Consensus 539 ~~~~li~a~~~~g~~~~A~~l~~~m~ 564 (592)
+|..|...|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36778888888888888888888754
No 276
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.35 E-value=29 Score=31.61 Aligned_cols=54 Identities=20% Similarity=0.289 Sum_probs=24.3
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 007695 268 AKENCLEDAERILKKMNENGIVPDIV-TSTVLVHMYSKAGNLDRAKEAFESLRSH 321 (592)
Q Consensus 268 ~~~g~~~~A~~l~~~m~~~g~~pd~~-~~~~Li~~~~~~g~~~~A~~~~~~m~~~ 321 (592)
++.+..++|+.-|..+.+.|..--.. .-..........|+...|...|++.-..
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d 123 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD 123 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc
Confidence 34445555666666555554331111 1111222334445555555555555443
No 277
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=85.07 E-value=39 Score=32.81 Aligned_cols=184 Identities=13% Similarity=0.078 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 007695 259 DYSKLIDAHAKENCLEDAERILKKMNENGIV--PDIVTSTVLVHMYSKAGNLDRAKEAFESLRSH-GFQPDKKVYNSMIM 335 (592)
Q Consensus 259 ~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~--pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~-g~~pd~~t~~~li~ 335 (592)
.|+.-+. -.+.|++++|.+.|+.+..+.+- -...+--.++.++-+.++++.|...+++.... +-.||+ -|-..|.
T Consensus 37 LY~~g~~-~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~Ylk 114 (254)
T COG4105 37 LYNEGLT-ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYYLK 114 (254)
T ss_pred HHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHHHH
Confidence 3444333 45567777777777777654211 12334445556666677777777777666543 223332 3334444
Q ss_pred HHHHc-------CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 007695 336 AYVNA-------GQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYG 408 (592)
Q Consensus 336 a~~~~-------g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~ 408 (592)
+++.. .+...+...+..+. .++.-|-.+.-...|......+... =...=..+...|.
T Consensus 115 gLs~~~~i~~~~rDq~~~~~A~~~f~------------~~i~ryPnS~Ya~dA~~~i~~~~d~----LA~~Em~IaryY~ 178 (254)
T COG4105 115 GLSYFFQIDDVTRDQSAARAAFAAFK------------ELVQRYPNSRYAPDAKARIVKLNDA----LAGHEMAIARYYL 178 (254)
T ss_pred HHHHhccCCccccCHHHHHHHHHHHH------------HHHHHCCCCcchhhHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 43322 12222222222221 1122222222222333322222211 0011123455666
Q ss_pred HcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007695 409 QAGDPDQARSNFDYMIRLGH--KPDDRCTASMIAAYGKKNLLDKALNLLLELEK 460 (592)
Q Consensus 409 ~~g~~~~A~~lf~~m~~~g~--~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~ 460 (592)
+.|.+..|..-++.|.+.-. .-....+-.+..+|...|..++|...-.-+..
T Consensus 179 kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 179 KRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 77777777777777766411 11123445566667777777776666555543
No 278
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=84.43 E-value=32 Score=31.27 Aligned_cols=27 Identities=4% Similarity=-0.061 Sum_probs=13.4
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 007695 422 YMIRLGHKPDDRCTASMIAAYGKKNLL 448 (592)
Q Consensus 422 ~m~~~g~~pd~~t~~~li~a~~~~g~~ 448 (592)
.+...++.|+...|..+|..+.+.|++
T Consensus 19 Sl~~~~i~~~~~L~~lli~lLi~~~~~ 45 (167)
T PF07035_consen 19 SLNQHNIPVQHELYELLIDLLIRNGQF 45 (167)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCH
Confidence 333444555555555555555555543
No 279
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=84.32 E-value=48 Score=33.82 Aligned_cols=226 Identities=14% Similarity=0.103 Sum_probs=111.7
Q ss_pred HHcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHH----CC-CCCCHHHHHHHHHHHHhC
Q 007695 303 SKAGNLDRAKEAFESLRSH--GFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMIT----SG-IERSEEIYLALLRSFAQC 375 (592)
Q Consensus 303 ~~~g~~~~A~~~~~~m~~~--g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~----~g-~~p~~~t~~~Ll~~~~~~ 375 (592)
....+.++|+..+.+-+.+ ...---.+|..+..+.++.|.+++++..--.-++ .. -..-...|..+.+++-+.
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l 96 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKL 96 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777665532 0111234566666777777777666544322111 10 000112333444444444
Q ss_pred CCHHHHHHHHHHHHHc-CCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHhcC
Q 007695 376 GDVRGAGQITNIMRIE-EFQP---TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGH-----KPDDRCTASMIAAYGKKN 446 (592)
Q Consensus 376 g~~~~A~~~~~~m~~~-g~~~---~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~-----~pd~~t~~~li~a~~~~g 446 (592)
-++.+++.+-..-... |..+ .-...-++..++.-.+.++++++.|+.....-. ......|..+-+.|.+..
T Consensus 97 ~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~ 176 (518)
T KOG1941|consen 97 CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK 176 (518)
T ss_pred HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence 4444444444333221 1111 112333455666666677777777776655211 112345666677777777
Q ss_pred CHHHHHHHHHHHHHC----CCCCCHHHHHH-----HHHHHHHcCCHHHHHHHHHHHHh----cCCCC-CHHHHHHHHHHH
Q 007695 447 LLDKALNLLLELEKD----GFEPGPATYTV-----LVDWLGRLQLINEAEQLLGKISE----LGEAP-PFKIQVSLCDMY 512 (592)
Q Consensus 447 ~~~~A~~l~~~m~~~----g~~p~~~ty~~-----li~~~~~~g~~~~A~~l~~~m~~----~g~~p-~~~~~~~Li~~~ 512 (592)
|+++|.-+.....+. ++..-...|.. +.-++...|.+-.|.+.-++..+ .|-.+ .......+.+.|
T Consensus 177 D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIy 256 (518)
T KOG1941|consen 177 DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIY 256 (518)
T ss_pred hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 777777665554331 32221222322 22345556666666666655443 23221 122334556666
Q ss_pred HHcCCHHHHHHHHHHH
Q 007695 513 ARAGIEKKALQALGFL 528 (592)
Q Consensus 513 ~~~g~~~~A~~~~~~m 528 (592)
...|+.+.|..-++..
T Consensus 257 R~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 257 RSRGDLERAFRRYEQA 272 (518)
T ss_pred HhcccHhHHHHHHHHH
Confidence 6777777766666555
No 280
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=84.15 E-value=27 Score=30.29 Aligned_cols=62 Identities=16% Similarity=0.201 Sum_probs=29.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC
Q 007695 506 VSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGF 568 (592)
Q Consensus 506 ~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~g~ 568 (592)
..-++.....|+-++-.+++..+.. +..+++...-.+..+|.+.|+..++-+++++..+.|+
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3344455555555555555555543 2344555555555566666666666666655555554
No 281
>PRK11619 lytic murein transglycosylase; Provisional
Probab=83.82 E-value=82 Score=35.52 Aligned_cols=131 Identities=11% Similarity=0.031 Sum_probs=66.0
Q ss_pred CCHHHHHHHHHHHHHC-CCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007695 446 NLLDKALNLLLELEKD-GFEPGP--ATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKAL 522 (592)
Q Consensus 446 g~~~~A~~l~~~m~~~-g~~p~~--~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~ 522 (592)
.+.+.|..++...... ++.+.. .....+.......+...++...+....... .+......-+....+.++++.+.
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~ 332 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLN 332 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHH
Confidence 4456677777665433 222222 222333333333322445555555443222 13344444455555777777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHhhhhhc
Q 007695 523 QALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFN 585 (592)
Q Consensus 523 ~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~l~~~~~~~ 585 (592)
..+..|...... ...-.--+..++...|+.++|..+|+..... .++..+++....+
T Consensus 333 ~~i~~L~~~~~~-~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~------~~fYG~LAa~~Lg 388 (644)
T PRK11619 333 TWLARLPMEAKE-KDEWRYWQADLLLEQGRKAEAEEILRQLMQQ------RGFYPMVAAQRLG 388 (644)
T ss_pred HHHHhcCHhhcc-CHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC------CCcHHHHHHHHcC
Confidence 777776543221 1121223566666678888888777776321 2344555555544
No 282
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=83.79 E-value=54 Score=33.49 Aligned_cols=127 Identities=13% Similarity=-0.036 Sum_probs=59.3
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCC---C--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCCCHHHHH-
Q 007695 367 ALLRSFAQCGDVRGAGQITNIMRIEEF---Q--PTLESCTLLVEAYGQAGDPDQARSNFDYMIR----LGHKPDDRCTA- 436 (592)
Q Consensus 367 ~Ll~~~~~~g~~~~A~~~~~~m~~~g~---~--~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~----~g~~pd~~t~~- 436 (592)
++..++...+.++++++.|+...+... . ....+|..|.+.|.+..++++|.-+..+..+ .++.--...|.
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 344555555556666666655543211 1 1234566666666666666666554443322 12211111121
Q ss_pred ----HHHHHHHhcCCHHHHHHHHHHHH----HCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007695 437 ----SMIAAYGKKNLLDKALNLLLELE----KDGFEPG-PATYTVLVDWLGRLQLINEAEQLLGKI 493 (592)
Q Consensus 437 ----~li~a~~~~g~~~~A~~l~~~m~----~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m 493 (592)
.|.-++...|..-.|.+.-++.. ..|-.+. .....++.+.|...|+.+.|..-|+..
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 23334455555555544444432 2232221 233345555666666666666555543
No 283
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.76 E-value=21 Score=40.25 Aligned_cols=179 Identities=15% Similarity=0.090 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007695 329 VYNSMIMAYVNAGQPKLGMSLVDMMITSGIERS--EEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEA 406 (592)
Q Consensus 329 t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~ 406 (592)
....-+..+++...++-|+.+-+.- +..++ ........+.+.+.|++++|...|-+-...- .| ..+|.-
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~---~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l-e~-----s~Vi~k 406 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQ---HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL-EP-----SEVIKK 406 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC-Ch-----HHHHHH
Confidence 4456777788888888888776543 33222 2233444555678899999988877655321 22 235666
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 007695 407 YGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486 (592)
Q Consensus 407 ~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A 486 (592)
|........-..+++.+.+.|.. +...-+.|+.+|.+.++.++...+.+.-. .|.. ..-....+..|.+.+-.++|
T Consensus 407 fLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a 482 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEA 482 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHH
Confidence 77777788888889999998885 56666779999999999999777776543 3322 11244566677777778887
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007695 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFL 528 (592)
Q Consensus 487 ~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m 528 (592)
..+-.+... +......+ +-..|++++|++.+..+
T Consensus 483 ~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 483 ELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 776554432 33444444 44678999999998866
No 284
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=82.62 E-value=49 Score=32.12 Aligned_cols=174 Identities=16% Similarity=0.146 Sum_probs=91.4
Q ss_pred HhCCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh------
Q 007695 373 AQCGDVRGAGQITNIMRIEE--FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGK------ 444 (592)
Q Consensus 373 ~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~------ 444 (592)
.+.|++++|.+.|+.+.... -+-...+.-.++-++.+.++++.|...+++....-+.....-|..-|.+.+.
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~ 124 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDD 124 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCc
Confidence 45677777777777776542 0112445555666677777777777777776664332222333333333321
Q ss_pred -cCCHHHH---HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHH
Q 007695 445 -KNLLDKA---LNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKK 520 (592)
Q Consensus 445 -~g~~~~A---~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~ 520 (592)
..|...+ +.-|+.++.. -||.. -...|..-...+... =...=..+.+-|.+.|.+..
T Consensus 125 ~~rDq~~~~~A~~~f~~~i~r--yPnS~-------------Ya~dA~~~i~~~~d~----LA~~Em~IaryY~kr~~~~A 185 (254)
T COG4105 125 VTRDQSAARAAFAAFKELVQR--YPNSR-------------YAPDAKARIVKLNDA----LAGHEMAIARYYLKRGAYVA 185 (254)
T ss_pred cccCHHHHHHHHHHHHHHHHH--CCCCc-------------chhhHHHHHHHHHHH----HHHHHHHHHHHHHHhcChHH
Confidence 1222223 3333333322 23221 111111111111110 01112345677888888888
Q ss_pred HHHHHHHHHHcCCCCCH---HHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 007695 521 ALQALGFLEAKKEQMGP---DDFERIINGLLAGGFLQDAQRVHGLMEAQ 566 (592)
Q Consensus 521 A~~~~~~m~~~~~~~~~---~~~~~li~a~~~~g~~~~A~~l~~~m~~~ 566 (592)
|..-++.|.+. .+-+. ..+-.+..+|...|-.++|.+.-+-+...
T Consensus 186 A~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 186 AINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 88888888875 22222 24556678888888888888777666544
No 285
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=82.38 E-value=3 Score=26.90 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=11.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Q 007695 295 STVLVHMYSKAGNLDRAKEAFES 317 (592)
Q Consensus 295 ~~~Li~~~~~~g~~~~A~~~~~~ 317 (592)
|+.|...|.+.|++++|.++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44455555555555555555555
No 286
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=82.14 E-value=56 Score=32.41 Aligned_cols=132 Identities=8% Similarity=-0.026 Sum_probs=81.0
Q ss_pred CHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHh-cC-CHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007695 412 DPDQARSNFDYMIR-LGHKPDDRCTASMIAAYGK-KN-LLDKALNLLLELEKD-GFEPGPATYTVLVDWLGRLQLINEAE 487 (592)
Q Consensus 412 ~~~~A~~lf~~m~~-~g~~pd~~t~~~li~a~~~-~g-~~~~A~~l~~~m~~~-g~~p~~~ty~~li~~~~~~g~~~~A~ 487 (592)
.+.+|+.+|+.... ..+--|......++..... .+ ....-.++.+-+... |-.++..+...++..++..+++..-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34566666663222 2234466666666666554 21 222333344444333 45677778888888888888888888
Q ss_pred HHHHHHHhc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-----HHHcCCCCCHHHHHHH
Q 007695 488 QLLGKISEL-GEAPPFKIQVSLCDMYARAGIEKKALQALGF-----LEAKKEQMGPDDFERI 543 (592)
Q Consensus 488 ~l~~~m~~~-g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~-----m~~~~~~~~~~~~~~l 543 (592)
+++...... +..-|...|..+|......|+..-..++.+. +...+...++..-..+
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L 284 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQL 284 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHH
Confidence 888877655 5556788888888888888888777777653 2334444455443333
No 287
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=79.83 E-value=11 Score=30.83 Aligned_cols=60 Identities=17% Similarity=0.062 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 007695 485 EAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIIN 545 (592)
Q Consensus 485 ~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 545 (592)
+..+-++.+....+.|++.+..+.+.+|.+.+++..|.++|+.+..+ .......|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 45555566666666677777777777777777777777777766654 2222224554443
No 288
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=79.46 E-value=15 Score=29.83 Aligned_cols=49 Identities=16% Similarity=0.026 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 007695 483 INEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAK 531 (592)
Q Consensus 483 ~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~ 531 (592)
.-++.+-++.+....+.|++.+..+-+.+|.+.+++..|.++|+.+..+
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K 71 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK 71 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3445555555555566666666666666666666666666666665543
No 289
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=79.23 E-value=48 Score=29.82 Aligned_cols=52 Identities=19% Similarity=-0.028 Sum_probs=28.1
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhc
Q 007695 443 GKKNLLDKALNLLLELEKDGFEPGPATYT-VLVDWLGRLQLINEAEQLLGKISEL 496 (592)
Q Consensus 443 ~~~g~~~~A~~l~~~m~~~g~~p~~~ty~-~li~~~~~~g~~~~A~~l~~~m~~~ 496 (592)
.+.++.+++..++..|.- +.|...... .-...+...|++.+|.++|+.+...
T Consensus 21 l~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 455666666666666654 334332221 1122355666777777777766544
No 290
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=78.98 E-value=43 Score=29.62 Aligned_cols=93 Identities=13% Similarity=0.156 Sum_probs=54.4
Q ss_pred hhhCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHH
Q 007695 248 LSEESFQTNVRD--YSKLIDAHAKENCLEDAERILKKMNENGI-----VPDIVTSTVLVHMYSKAGN-LDRAKEAFESLR 319 (592)
Q Consensus 248 ~~~~~~~p~~~~--y~~Li~~~~~~g~~~~A~~l~~~m~~~g~-----~pd~~~~~~Li~~~~~~g~-~~~A~~~~~~m~ 319 (592)
+......++..+ .|.++.-....+++...+++++.+..... ..+..+|+.+++..++... ---+..+|+.|.
T Consensus 28 ~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk 107 (145)
T PF13762_consen 28 MQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLK 107 (145)
T ss_pred hhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHH
Confidence 344455555544 67777777777788887777777632110 1133456666666654444 233556666666
Q ss_pred hCCCCCCHHHHHHHHHHHHHc
Q 007695 320 SHGFQPDKKVYNSMIMAYVNA 340 (592)
Q Consensus 320 ~~g~~pd~~t~~~li~a~~~~ 340 (592)
+.+.+++..-|..+|.++.+-
T Consensus 108 ~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 108 KNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred HcCCCCCHHHHHHHHHHHHcC
Confidence 655666666666666666443
No 291
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=78.18 E-value=75 Score=31.52 Aligned_cols=54 Identities=15% Similarity=-0.005 Sum_probs=24.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007695 438 MIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492 (592)
Q Consensus 438 li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~ 492 (592)
....|..+|.+.+|.++-++..... +.+...+-.++..+...|+--.+.+-+++
T Consensus 285 va~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyer 338 (361)
T COG3947 285 VARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYER 338 (361)
T ss_pred HHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHH
Confidence 3344555555555555554444322 23334444455555555554444444333
No 292
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.80 E-value=1e+02 Score=35.70 Aligned_cols=28 Identities=25% Similarity=0.445 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 007695 259 DYSKLIDAHAKENCLEDAERILKKMNEN 286 (592)
Q Consensus 259 ~y~~Li~~~~~~g~~~~A~~l~~~m~~~ 286 (592)
-|..|+..|...|+.++|+++|.+....
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~ 533 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDE 533 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhcc
Confidence 4788999999999999999999988763
No 293
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=77.47 E-value=3.3 Score=26.44 Aligned_cols=22 Identities=18% Similarity=0.312 Sum_probs=11.8
Q ss_pred CHHHHHHHHHHHHhCCCHHHHH
Q 007695 536 GPDDFERIINGLLAGGFLQDAQ 557 (592)
Q Consensus 536 ~~~~~~~li~a~~~~g~~~~A~ 557 (592)
++..|+.+...|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 4455555555555555555553
No 294
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=77.45 E-value=54 Score=29.48 Aligned_cols=67 Identities=15% Similarity=0.163 Sum_probs=36.5
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007695 268 AKENCLEDAERILKKMNENGIVPDIVTST-VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYV 338 (592)
Q Consensus 268 ~~~g~~~~A~~l~~~m~~~g~~pd~~~~~-~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~ 338 (592)
.+.++.+++..++..+... .|...... .-...+...|++.+|.++|+.+... .|....-..|+..|.
T Consensus 21 l~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~--~~~~p~~kALlA~CL 88 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER--APGFPYAKALLALCL 88 (160)
T ss_pred HccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHH
Confidence 4456777777777777653 34333222 2223455677777777777776654 233333334444443
No 295
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=76.90 E-value=69 Score=30.41 Aligned_cols=177 Identities=18% Similarity=0.140 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 007695 308 LDRAKEAFESLRSHGFQPD-KKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITN 386 (592)
Q Consensus 308 ~~~A~~~~~~m~~~g~~pd-~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~ 386 (592)
+..|.-=|.+.... .|+ +.+||-+.--+...|+++.|.+.|+...+.+..-+-...|.-|..| -.|++.-|.+-+-
T Consensus 81 ~~LAR~DftQaLai--~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y-Y~gR~~LAq~d~~ 157 (297)
T COG4785 81 RALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY-YGGRYKLAQDDLL 157 (297)
T ss_pred HHHHhhhhhhhhhc--CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee-ecCchHhhHHHHH
Confidence 33444444444432 333 4567777777777888888888888887765433333333333333 3577777776666
Q ss_pred HHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 007695 387 IMRIEE-FQPTLESCTLLVEAYGQAGDPDQARSNF-DYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE 464 (592)
Q Consensus 387 ~m~~~g-~~~~~~~~~~Li~~~~~~g~~~~A~~lf-~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~ 464 (592)
..-+.+ -.|-...|--++. +.-++.+|..-+ ++... .|..-|...|-.|. .|++.+ ..+++++....-.
T Consensus 158 ~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~y-LgkiS~-e~l~~~~~a~a~~ 228 (297)
T COG4785 158 AFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFY-LGKISE-ETLMERLKADATD 228 (297)
T ss_pred HHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHH-HhhccH-HHHHHHHHhhccc
Confidence 655543 1222333333332 233455554433 33332 24334443333322 122211 2334444332110
Q ss_pred ------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007695 465 ------PGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496 (592)
Q Consensus 465 ------p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 496 (592)
.-+.||-.+...+...|+.++|..+|+-.+..
T Consensus 229 n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 229 NTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred hHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 01345666666666677777777777665543
No 296
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=76.79 E-value=36 Score=38.17 Aligned_cols=90 Identities=14% Similarity=0.104 Sum_probs=40.9
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhc
Q 007695 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG-HKPDDRCTASMIAAYGKK 445 (592)
Q Consensus 367 ~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g-~~pd~~t~~~li~a~~~~ 445 (592)
.....+.-.|+++.|.+.+-. ..+...+.+++...+.-|.-.+-.+... ..+.... -.|...-+..||..|.+.
T Consensus 263 ~Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~ 337 (613)
T PF04097_consen 263 LYFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRS 337 (613)
T ss_dssp -HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHT
T ss_pred HHHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHH
Confidence 344555667888888887776 1222344555554444433222222211 2222211 112226678888888764
Q ss_pred ---CCHHHHHHHHHHHHHC
Q 007695 446 ---NLLDKALNLLLELEKD 461 (592)
Q Consensus 446 ---g~~~~A~~l~~~m~~~ 461 (592)
.+...|.++|-.+...
T Consensus 338 F~~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 338 FEITDPREALQYLYLICLF 356 (613)
T ss_dssp TTTT-HHHHHHHHHGGGGS
T ss_pred HhccCHHHHHHHHHHHHHc
Confidence 6788888888777554
No 297
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.75 E-value=1.4e+02 Score=33.69 Aligned_cols=298 Identities=15% Similarity=0.064 Sum_probs=173.0
Q ss_pred hCCCCCCHHHHH-----HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhC
Q 007695 250 EESFQTNVRDYS-----KLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNL---DRAKEAFESLRSH 321 (592)
Q Consensus 250 ~~~~~p~~~~y~-----~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~---~~A~~~~~~m~~~ 321 (592)
+-|++.+..-|. .+|+-+...+.+..|.++-..+...-.. +...|.....-+.+..+. +-+..+-+++...
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 345555555554 4577788889999999988777543112 156677777777776432 2233333333322
Q ss_pred CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-----
Q 007695 322 GFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGI----ERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE----- 392 (592)
Q Consensus 322 g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~----~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g----- 392 (592)
.. ...+|..+.+-....|+++.|..+++.=...+. -.+..-+...+.-+...|+.+....++-.+.+.-
T Consensus 504 -~~-~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l 581 (829)
T KOG2280|consen 504 -LT-PGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSL 581 (829)
T ss_pred -CC-CceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH
Confidence 23 335677777766789999998887754222210 0122334566777788888888877777766431
Q ss_pred ------CCCCHHHHHHHHH--------HHHHcCCHHHHHHHHH--HHHH----cCCCCCHHHHHHHHHHHHhcCC-----
Q 007695 393 ------FQPTLESCTLLVE--------AYGQAGDPDQARSNFD--YMIR----LGHKPDDRCTASMIAAYGKKNL----- 447 (592)
Q Consensus 393 ------~~~~~~~~~~Li~--------~~~~~g~~~~A~~lf~--~m~~----~g~~pd~~t~~~li~a~~~~g~----- 447 (592)
.+.....|.-++. .+.+.++-.++...|. ...+ .|..|+. ...-.+|.+...
T Consensus 582 ~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~l---k~~a~~~a~sk~~s~e~ 658 (829)
T KOG2280|consen 582 FMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPAL---KTAANAFAKSKEKSFEA 658 (829)
T ss_pred HHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhH---HHHHHHHhhhhhhhhHH
Confidence 1112222222221 1122222222222221 1001 1222332 223344444332
Q ss_pred -----HHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 007695 448 -----LDKALNLLLELEKD-GFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKA 521 (592)
Q Consensus 448 -----~~~A~~l~~~m~~~-g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A 521 (592)
..+-+.+.+.+... |.....-+.+--+.-+...|+..+|.++-.+.. -|+...|-.-+.+++..+++++-
T Consensus 659 ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeL 734 (829)
T KOG2280|consen 659 KALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEEL 734 (829)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHH
Confidence 12223333444332 434444556666677778899999998877653 36888999999999999999987
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 007695 522 LQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLM 563 (592)
Q Consensus 522 ~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m 563 (592)
.++-+... +|.-|.-.+.+|.+.|+.++|.+++-+.
T Consensus 735 ekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv 770 (829)
T KOG2280|consen 735 EKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRV 770 (829)
T ss_pred HHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhcc
Confidence 77655432 1344888899999999999999988665
No 298
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=76.54 E-value=19 Score=29.31 Aligned_cols=46 Identities=13% Similarity=0.047 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 007695 344 KLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMR 389 (592)
Q Consensus 344 ~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~ 389 (592)
-++.+-+..+...++.|++.+..+.+++|.+.+++..|.++|+..+
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3455555555555666666677777777777777777777666655
No 299
>PRK09687 putative lyase; Provisional
Probab=75.96 E-value=88 Score=31.14 Aligned_cols=136 Identities=15% Similarity=0.095 Sum_probs=59.4
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007695 361 SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAG-DPDQARSNFDYMIRLGHKPDDRCTASMI 439 (592)
Q Consensus 361 ~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g-~~~~A~~lf~~m~~~g~~pd~~t~~~li 439 (592)
+..+-...+.++++.++. .+...+-.+.. .+|...-...+.++++.+ +...+...+..+... +|...-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D---~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVINDE-AAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQD---KNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCCH-HHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcC---CChHHHHHHH
Confidence 444444555555555542 33333333332 233334444444444432 123344444444432 3444455555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 007695 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512 (592)
Q Consensus 440 ~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~ 512 (592)
.++.+.|+. .|+..+-...+.+. .....+.+++..|.. ++...+..+.+.. ||..+-...+.++
T Consensus 214 ~aLg~~~~~-~av~~Li~~L~~~~-----~~~~a~~ALg~ig~~-~a~p~L~~l~~~~--~d~~v~~~a~~a~ 277 (280)
T PRK09687 214 IGLALRKDK-RVLSVLIKELKKGT-----VGDLIIEAAGELGDK-TLLPVLDTLLYKF--DDNEIITKAIDKL 277 (280)
T ss_pred HHHHccCCh-hHHHHHHHHHcCCc-----hHHHHHHHHHhcCCH-hHHHHHHHHHhhC--CChhHHHHHHHHH
Confidence 555555553 33433333333321 123455556666654 4555555554421 2444444434333
No 300
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=75.73 E-value=89 Score=31.06 Aligned_cols=58 Identities=16% Similarity=0.150 Sum_probs=35.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007695 400 CTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLEL 458 (592)
Q Consensus 400 ~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m 458 (592)
++.....|..+|.+.+|..+.+......+ .+...+-.++..+...|+--.|.+-+.++
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldp-L~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDP-LSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcCh-hhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 34455666677777777777766665432 35556666677777777755555555554
No 301
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=75.71 E-value=36 Score=31.86 Aligned_cols=78 Identities=15% Similarity=0.147 Sum_probs=48.0
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhCCCHH
Q 007695 303 SKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS---GIERSEEIYLALLRSFAQCGDVR 379 (592)
Q Consensus 303 ~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~---g~~p~~~t~~~Ll~~~~~~g~~~ 379 (592)
.+.|+ +.|++.|-.+...+.--++.....+...|. ..+.++++.++....+. +-.+|+..+.+|.+.|.+.++++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 34444 567777777766664445555555555554 56677777777666552 22556777777777777777766
Q ss_pred HHH
Q 007695 380 GAG 382 (592)
Q Consensus 380 ~A~ 382 (592)
.|.
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 653
No 302
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=75.23 E-value=8.1 Score=24.12 Aligned_cols=29 Identities=10% Similarity=0.016 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 007695 538 DDFERIINGLLAGGFLQDAQRVHGLMEAQ 566 (592)
Q Consensus 538 ~~~~~li~a~~~~g~~~~A~~l~~~m~~~ 566 (592)
.+|..+..+|...|++++|+..|++.++.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 46778888888888888888888887753
No 303
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=75.14 E-value=4.3 Score=25.86 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=12.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHH
Q 007695 394 QPTLESCTLLVEAYGQAGDPDQAR 417 (592)
Q Consensus 394 ~~~~~~~~~Li~~~~~~g~~~~A~ 417 (592)
+-|..+|+.+...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 334555555555555555555553
No 304
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=74.32 E-value=63 Score=28.69 Aligned_cols=64 Identities=20% Similarity=0.190 Sum_probs=38.9
Q ss_pred HHHHHHHHHH---HHHcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 007695 257 VRDYSKLIDA---HAKENCLEDAERILKKMNENGIVPDIVTS-TVLVHMYSKAGNLDRAKEAFESLRSHG 322 (592)
Q Consensus 257 ~~~y~~Li~~---~~~~g~~~~A~~l~~~m~~~g~~pd~~~~-~~Li~~~~~~g~~~~A~~~~~~m~~~g 322 (592)
..+.+.||.. -...++++++..+++.|.-. .|+..-. ..-...+...|++++|.++|+.+.+.+
T Consensus 7 ~~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 7 NRLLGGLIEVLMYALRSADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 3344444443 23477888888888888764 3432221 112234567888888888888888753
No 305
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.31 E-value=38 Score=33.88 Aligned_cols=103 Identities=15% Similarity=0.063 Sum_probs=69.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 007695 392 EFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL---GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPA 468 (592)
Q Consensus 392 g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~---g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ 468 (592)
|.+....+...++..-....+++.+...+-+++.. ...|+...+ +++.. +-.-+.++++.++..=+..|+-||.+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irl-llky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRL-LLKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHH-HHccChHHHHHHHhCcchhccccchh
Confidence 34455556666666666677788888888877764 112222222 22322 23345668888877777778888888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007695 469 TYTVLVDWLGRLQLINEAEQLLGKISEL 496 (592)
Q Consensus 469 ty~~li~~~~~~g~~~~A~~l~~~m~~~ 496 (592)
+++.+++.+.+.+++.+|.++...|+..
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 8888888888888888888888777654
No 306
>PHA02875 ankyrin repeat protein; Provisional
Probab=72.71 E-value=82 Score=33.10 Aligned_cols=18 Identities=6% Similarity=-0.210 Sum_probs=7.9
Q ss_pred ccCCchhHHHHHHhhcCC
Q 007695 203 KEEDPSPLLAEWKELLQP 220 (592)
Q Consensus 203 ~~g~~~~A~~~~~~~~~p 220 (592)
+.|+.+-+..+++.+..|
T Consensus 11 ~~g~~~iv~~Ll~~g~~~ 28 (413)
T PHA02875 11 LFGELDIARRLLDIGINP 28 (413)
T ss_pred HhCCHHHHHHHHHCCCCC
Confidence 444444444444444333
No 307
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=72.64 E-value=32 Score=32.13 Aligned_cols=16 Identities=19% Similarity=0.164 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHhcCCH
Q 007695 433 RCTASMIAAYGKKNLL 448 (592)
Q Consensus 433 ~t~~~li~a~~~~g~~ 448 (592)
..+.+|++.|.+.|++
T Consensus 179 eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 179 EILKSLASIYQKLKNY 194 (203)
T ss_pred HHHHHHHHHHHHhcch
Confidence 3333333333333333
No 308
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=72.61 E-value=51 Score=27.15 Aligned_cols=47 Identities=15% Similarity=0.032 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 007695 345 LGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE 391 (592)
Q Consensus 345 ~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~ 391 (592)
+..+-+..+...++.|++.+..+.+++|.+.+++..|.++|+.++.+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44445555555556666666666666666666666666666666544
No 309
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=72.15 E-value=11 Score=23.38 Aligned_cols=29 Identities=7% Similarity=-0.043 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 007695 538 DDFERIINGLLAGGFLQDAQRVHGLMEAQ 566 (592)
Q Consensus 538 ~~~~~li~a~~~~g~~~~A~~l~~~m~~~ 566 (592)
..|..+...|...|++++|++.|++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 45677788888888888888888887653
No 310
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=71.47 E-value=9.9 Score=24.75 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007695 294 TSTVLVHMYSKAGNLDRAKEAFESLR 319 (592)
Q Consensus 294 ~~~~Li~~~~~~g~~~~A~~~~~~m~ 319 (592)
+++.|...|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 44455555555555555555554443
No 311
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=70.52 E-value=11 Score=24.53 Aligned_cols=27 Identities=15% Similarity=0.134 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 007695 538 DDFERIINGLLAGGFLQDAQRVHGLME 564 (592)
Q Consensus 538 ~~~~~li~a~~~~g~~~~A~~l~~~m~ 564 (592)
.+++.|...|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 456677777777777777777777665
No 312
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=69.15 E-value=12 Score=23.30 Aligned_cols=20 Identities=25% Similarity=0.446 Sum_probs=7.1
Q ss_pred HHHHHHHcCCHHHHHHHHHH
Q 007695 298 LVHMYSKAGNLDRAKEAFES 317 (592)
Q Consensus 298 Li~~~~~~g~~~~A~~~~~~ 317 (592)
+..+|...|++++|...|++
T Consensus 7 ~g~~~~~~~~~~~A~~~~~~ 26 (34)
T PF00515_consen 7 LGNAYFQLGDYEEALEYYQR 26 (34)
T ss_dssp HHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHhCCchHHHHHHHH
Confidence 33333333333333333333
No 313
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.03 E-value=57 Score=35.55 Aligned_cols=81 Identities=20% Similarity=0.196 Sum_probs=35.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007695 291 DIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370 (592)
Q Consensus 291 d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~ 370 (592)
+..-|..|..+....+++..|.+.|..... |..|+-.+...|+-+....+-....+.|. .|...-
T Consensus 665 s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~------~N~AF~ 729 (794)
T KOG0276|consen 665 SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK------NNLAFL 729 (794)
T ss_pred chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc------cchHHH
Confidence 344455555555555555555555544332 23444444444444433333334444331 122223
Q ss_pred HHHhCCCHHHHHHHHH
Q 007695 371 SFAQCGDVRGAGQITN 386 (592)
Q Consensus 371 ~~~~~g~~~~A~~~~~ 386 (592)
+|...|+++++.+++-
T Consensus 730 ~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 730 AYFLSGDYEECLELLI 745 (794)
T ss_pred HHHHcCCHHHHHHHHH
Confidence 3444455555554443
No 314
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=68.80 E-value=2e+02 Score=32.20 Aligned_cols=195 Identities=13% Similarity=0.116 Sum_probs=114.9
Q ss_pred CCHhhHHHHHHHHHhhCHHHHHHHHHHHhhhCCCCCCH--HHHHHHHHHHH-HcCCHHHHHHHHHHHHHCCCCCCHH---
Q 007695 220 PSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNV--RDYSKLIDAHA-KENCLEDAERILKKMNENGIVPDIV--- 293 (592)
Q Consensus 220 p~~~t~~~lL~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~y~~Li~~~~-~~g~~~~A~~l~~~m~~~g~~pd~~--- 293 (592)
.+...|..+|.. +.+.++...+...+.|.. .++-.+...+. ...+++.|+..+++.....-.++..
T Consensus 28 ~~l~~Y~kLI~~--------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k 99 (608)
T PF10345_consen 28 EQLKQYYKLIAT--------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLK 99 (608)
T ss_pred hhHHHHHHHHHH--------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHH
Confidence 455667777765 445555555444444433 34556666666 5789999999999875443223322
Q ss_pred --HHHHHHHHHHHcCCHHHHHHHHHHHHhCC----CCCCHHHHHHH-HHHHHHcCCchHHHHHHHHHHHCC---CCCCHH
Q 007695 294 --TSTVLVHMYSKAGNLDRAKEAFESLRSHG----FQPDKKVYNSM-IMAYVNAGQPKLGMSLVDMMITSG---IERSEE 363 (592)
Q Consensus 294 --~~~~Li~~~~~~g~~~~A~~~~~~m~~~g----~~pd~~t~~~l-i~a~~~~g~~~~A~~l~~~m~~~g---~~p~~~ 363 (592)
+...++..+.+.+... |....++..+.- ..+-...|.-+ +..+...+++..|.+.++.+...- ..|-..
T Consensus 100 ~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~ 178 (608)
T PF10345_consen 100 FRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVF 178 (608)
T ss_pred HHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHH
Confidence 2345677777777766 888888866431 11222233333 333334479999999998886632 334445
Q ss_pred HHHHHHHHHH--hCCCHHHHHHHHHHHHHcC---------CCCCHHHHHHHHHHH--HHcCCHHHHHHHHHHH
Q 007695 364 IYLALLRSFA--QCGDVRGAGQITNIMRIEE---------FQPTLESCTLLVEAY--GQAGDPDQARSNFDYM 423 (592)
Q Consensus 364 t~~~Ll~~~~--~~g~~~~A~~~~~~m~~~g---------~~~~~~~~~~Li~~~--~~~g~~~~A~~lf~~m 423 (592)
++..++.+.. +.+..+++.+.++.+.... ..|...+|..++..+ ...|+++.+...++++
T Consensus 179 v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 179 VLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555555544 3455667777776663321 134566777776654 4567766666655544
No 315
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=68.43 E-value=33 Score=32.53 Aligned_cols=57 Identities=12% Similarity=0.076 Sum_probs=28.4
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 007695 331 NSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIM 388 (592)
Q Consensus 331 ~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m 388 (592)
+.-++.+.+.++..+++....+-++.. +.|..+-..+++.||-.|++++|..-++-.
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~ 61 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLA 61 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHH
Confidence 344445555555555555555444432 224444455555555555555555444433
No 316
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=68.06 E-value=88 Score=27.79 Aligned_cols=50 Identities=16% Similarity=0.106 Sum_probs=26.2
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 007695 444 KKNLLDKALNLLLELEKDGFEPGP---ATYTVLVDWLGRLQLINEAEQLLGKISELG 497 (592)
Q Consensus 444 ~~g~~~~A~~l~~~m~~~g~~p~~---~ty~~li~~~~~~g~~~~A~~l~~~m~~~g 497 (592)
..++.+++..+++.|.- +.|+. .+|... .+...|++++|.++++++.+.+
T Consensus 22 ~~~d~~D~e~lLdALrv--LrP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRV--LRPNLKELDMFDGW--LLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHH--hCCCccccchhHHH--HHHHcCCHHHHHHHHHhhhccC
Confidence 35666666666666544 23332 233222 2455666666666666665543
No 317
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=67.89 E-value=1.9e+02 Score=31.62 Aligned_cols=99 Identities=15% Similarity=0.124 Sum_probs=65.2
Q ss_pred CcchHHHHHHHHccc-ccCCchhHHHHHHhhcC---CCHhhHHHHHHHHH--hhCHHHHHHHHHHHhhhCCCC-CCHHHH
Q 007695 188 TGKCKLITDKILSLE-KEEDPSPLLAEWKELLQ---PSRIDWINLLDRLR--EQNTQLYFKVAELVLSEESFQ-TNVRDY 260 (592)
Q Consensus 188 ~~~~~~~~~~l~~~~-~~g~~~~A~~~~~~~~~---p~~~t~~~lL~~~~--~~~~~~~~~~~~~~~~~~~~~-p~~~~y 260 (592)
.|.|..+......+. +-|..+.+.++|++++. -+..-|...+.-+. .++.+.....++....--|.. -+...|
T Consensus 75 yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lW 154 (577)
T KOG1258|consen 75 YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLW 154 (577)
T ss_pred CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHH
Confidence 466666666677666 88999999999999843 34555666666553 344444445555554443332 233357
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHC
Q 007695 261 SKLIDAHAKENCLEDAERILKKMNEN 286 (592)
Q Consensus 261 ~~Li~~~~~~g~~~~A~~l~~~m~~~ 286 (592)
...|..-..++++.....+|++.++.
T Consensus 155 dkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 155 DKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHhh
Confidence 77777777788888888888888874
No 318
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=67.40 E-value=1.8e+02 Score=31.25 Aligned_cols=165 Identities=12% Similarity=0.074 Sum_probs=113.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007695 290 PDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369 (592)
Q Consensus 290 pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll 369 (592)
.|....-+++..++.+.+..-...+..+|...| -+...|..++.+|..+ ..++-..+++++.+..+. |.+.-..|.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 355667788888888888888888888888764 4677888888888887 667778888888876543 444444444
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHH
Q 007695 370 RSFAQCGDVRGAGQITNIMRIEEFQP-----TLESCTLLVEAYGQAGDPDQARSNFDYMIR-LGHKPDDRCTASMIAAYG 443 (592)
Q Consensus 370 ~~~~~~g~~~~A~~~~~~m~~~g~~~-----~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~-~g~~pd~~t~~~li~a~~ 443 (592)
.-|-+ ++...+...|..+...-++. -...|.-|+..- ..+.+....+..++.. .|...-.+.+.-+-.-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 44444 77777777777776554321 123555555422 2456666777666665 355556667777777888
Q ss_pred hcCCHHHHHHHHHHHHHC
Q 007695 444 KKNLLDKALNLLLELEKD 461 (592)
Q Consensus 444 ~~g~~~~A~~l~~~m~~~ 461 (592)
...++.+|++++..+.+.
T Consensus 217 ~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 217 ENENWTEAIRILKHILEH 234 (711)
T ss_pred cccCHHHHHHHHHHHhhh
Confidence 888888888888877665
No 319
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=67.28 E-value=2.1e+02 Score=31.77 Aligned_cols=16 Identities=19% Similarity=0.137 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHcCCHH
Q 007695 259 DYSKLIDAHAKENCLE 274 (592)
Q Consensus 259 ~y~~Li~~~~~~g~~~ 274 (592)
.+..++++....|--.
T Consensus 342 ~r~~~~Dal~~~GT~~ 357 (574)
T smart00638 342 ARRIFLDAVAQAGTPP 357 (574)
T ss_pred HHHHHHHHHHhcCCHH
Confidence 4444555555555333
No 320
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=67.27 E-value=37 Score=32.14 Aligned_cols=76 Identities=11% Similarity=0.073 Sum_probs=44.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHH
Q 007695 365 YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG--HKPDDRCTASMIAA 441 (592)
Q Consensus 365 ~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g--~~pd~~t~~~li~a 441 (592)
.+.-++.+.+.+.+++++....+-.+.. +.|...-..++..||-.|++++|..-++-.-... ..+-..+|..+|.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3445556666677777777666655554 4555666667777777777777766666554421 22334455555543
No 321
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=66.97 E-value=14 Score=22.79 Aligned_cols=23 Identities=35% Similarity=0.418 Sum_probs=9.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 007695 297 VLVHMYSKAGNLDRAKEAFESLR 319 (592)
Q Consensus 297 ~Li~~~~~~g~~~~A~~~~~~m~ 319 (592)
.+...|...|++++|.+.|++..
T Consensus 6 ~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 6 YLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHH
Confidence 33344444444444444444433
No 322
>PRK09687 putative lyase; Provisional
Probab=66.80 E-value=1.4e+02 Score=29.67 Aligned_cols=137 Identities=12% Similarity=0.003 Sum_probs=69.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007695 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKN-LLDKALNLLLELEKDGFEPGPATYTVL 473 (592)
Q Consensus 395 ~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g-~~~~A~~l~~~m~~~g~~p~~~ty~~l 473 (592)
++..+-...+.++++.++. .+...+-.+... +|...-...+.++.+.+ +...+...+..+.. .++..+-...
T Consensus 140 ~~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A 212 (280)
T PRK09687 140 KSTNVRFAVAFALSVINDE-AAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEA 212 (280)
T ss_pred CCHHHHHHHHHHHhccCCH-HHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHH
Confidence 3555555666666666653 444444444442 34444444444555442 13345555554443 3455666666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007695 474 VDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547 (592)
Q Consensus 474 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~ 547 (592)
+.++++.++. .+...+-...+.+ + .....+.++...|.. +|...+..+... .+|...-...+.++
T Consensus 213 ~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 213 IIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred HHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 6677777664 3443333333322 2 233556666666664 566666666553 22444444444444
No 323
>PHA02875 ankyrin repeat protein; Provisional
Probab=64.82 E-value=1.3e+02 Score=31.56 Aligned_cols=81 Identities=19% Similarity=0.213 Sum_probs=39.0
Q ss_pred HHHHHHHhhCHHHHHHHHHHHhhhCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHH
Q 007695 227 NLLDRLREQNTQLYFKVAELVLSEESFQTNVRD--YSKLIDAHAKENCLEDAERILKKMNENGIVPDIV--TSTVLVHMY 302 (592)
Q Consensus 227 ~lL~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~--~~~~Li~~~ 302 (592)
.|..|+..++.+. ++.++ +.|..|+... ..+.+..+++.|+.+- .+.+.+.|..|+.. ...+.+...
T Consensus 5 ~L~~A~~~g~~~i----v~~Ll-~~g~~~n~~~~~g~tpL~~A~~~~~~~~----v~~Ll~~ga~~~~~~~~~~t~L~~A 75 (413)
T PHA02875 5 ALCDAILFGELDI----ARRLL-DIGINPNFEIYDGISPIKLAMKFRDSEA----IKLLMKHGAIPDVKYPDIESELHDA 75 (413)
T ss_pred HHHHHHHhCCHHH----HHHHH-HCCCCCCccCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCccccCCCcccHHHHH
Confidence 3444555554332 23333 2455555433 2344555666676653 33444556555432 122345555
Q ss_pred HHcCCHHHHHHHHH
Q 007695 303 SKAGNLDRAKEAFE 316 (592)
Q Consensus 303 ~~~g~~~~A~~~~~ 316 (592)
+..|+.+.+..+++
T Consensus 76 ~~~g~~~~v~~Ll~ 89 (413)
T PHA02875 76 VEEGDVKAVEELLD 89 (413)
T ss_pred HHCCCHHHHHHHHH
Confidence 66777665544443
No 324
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=63.83 E-value=1.7 Score=38.18 Aligned_cols=54 Identities=19% Similarity=0.222 Sum_probs=31.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007695 263 LIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFE 316 (592)
Q Consensus 263 Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~ 316 (592)
+|..+.+.+.+..+..+++.+...+..-+...++.++..|++.+..++..++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 445555566666666666666655444456666666666666665555555554
No 325
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=62.37 E-value=2.8 Score=36.88 Aligned_cols=54 Identities=7% Similarity=0.174 Sum_probs=28.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHH
Q 007695 298 LVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVD 351 (592)
Q Consensus 298 Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~ 351 (592)
++..+.+.+....+..+++.+...+...+....+.++..|++.++.+...++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 344444555555555556555544434445556666666666655555555554
No 326
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=61.30 E-value=1.1e+02 Score=32.42 Aligned_cols=85 Identities=11% Similarity=-0.038 Sum_probs=38.5
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007695 443 GKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKAL 522 (592)
Q Consensus 443 ~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~ 522 (592)
...|+++.++..+...... +.....+..++++...+.|++++|..+-.-|....+. +..+...-....-..|-++++.
T Consensus 334 ~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~ 411 (831)
T PRK15180 334 SHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSY 411 (831)
T ss_pred HHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHH
Confidence 3445555555554443221 2233445555555555555555555555555444333 3333332222223334455555
Q ss_pred HHHHHHH
Q 007695 523 QALGFLE 529 (592)
Q Consensus 523 ~~~~~m~ 529 (592)
..|+++.
T Consensus 412 ~~wk~~~ 418 (831)
T PRK15180 412 HYWKRVL 418 (831)
T ss_pred HHHHHHh
Confidence 5555543
No 327
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=61.14 E-value=1.5e+02 Score=28.18 Aligned_cols=181 Identities=18% Similarity=0.026 Sum_probs=94.7
Q ss_pred CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007695 376 GDVRGAGQITNIMRIEEFQPT-LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454 (592)
Q Consensus 376 g~~~~A~~~~~~m~~~g~~~~-~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l 454 (592)
|-+.-|..=|.+.... .|+ ..+||-|.--+...|+++.|.+.|+...+..+.-+-...|.-| ++--.|++.-|.+-
T Consensus 79 GL~~LAR~DftQaLai--~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d 155 (297)
T COG4785 79 GLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDD 155 (297)
T ss_pred hHHHHHhhhhhhhhhc--CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHH
Confidence 3344444444444433 343 5778888888888899999999998888765543433334333 23345777777665
Q ss_pred HHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHH-HHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 007695 455 LLELEKD-GFEPGPATYTVLVDWLGRLQLINEAEQLLG-KISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKK 532 (592)
Q Consensus 455 ~~~m~~~-g~~p~~~ty~~li~~~~~~g~~~~A~~l~~-~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~ 532 (592)
|...-+. .-.|-...|..++ ...-++.+|..-+. +.... +..-|...|-.|.- |++.. ..+++++....
T Consensus 156 ~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yL-gkiS~-e~l~~~~~a~a 226 (297)
T COG4785 156 LLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYL-GKISE-ETLMERLKADA 226 (297)
T ss_pred HHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHH-hhccH-HHHHHHHHhhc
Confidence 5554443 2223233333332 12334555544333 33221 33444433333221 22111 11223332211
Q ss_pred C------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC
Q 007695 533 E------QMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGF 568 (592)
Q Consensus 533 ~------~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~g~ 568 (592)
. ..=..||..+..-+...|+.++|..+|+-.....+
T Consensus 227 ~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 227 TDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 1 00123677788888888999999888887776543
No 328
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=61.06 E-value=2.8e+02 Score=31.09 Aligned_cols=195 Identities=16% Similarity=0.120 Sum_probs=117.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HCCCCC--CHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhCCCCCCHH-
Q 007695 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMN-ENGIVP--DIVTSTVLVHMYS-KAGNLDRAKEAFESLRSHGFQPDKK- 328 (592)
Q Consensus 254 ~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~-~~g~~p--d~~~~~~Li~~~~-~~g~~~~A~~~~~~m~~~g~~pd~~- 328 (592)
..++..|..||... ++-++.+. +..++| +..++-.+...+. ...+++.|...+++.....-.++..
T Consensus 27 ~~~l~~Y~kLI~~a---------i~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d 97 (608)
T PF10345_consen 27 EEQLKQYYKLIATA---------IKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTD 97 (608)
T ss_pred hhhHHHHHHHHHHH---------HHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 45667788887754 44455555 333444 3445666777666 6789999999999875433223322
Q ss_pred ----HHHHHHHHHHHcCCchHHHHHHHHHHHC----CCCCCHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHcC---CCCC
Q 007695 329 ----VYNSMIMAYVNAGQPKLGMSLVDMMITS----GIERSEEIYLAL-LRSFAQCGDVRGAGQITNIMRIEE---FQPT 396 (592)
Q Consensus 329 ----t~~~li~a~~~~g~~~~A~~l~~~m~~~----g~~p~~~t~~~L-l~~~~~~g~~~~A~~~~~~m~~~g---~~~~ 396 (592)
+-..++..+.+.+... |...+++.++. +..+-...|..+ +..+...++...|.+.++.+.... ..|-
T Consensus 98 ~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~ 176 (608)
T PF10345_consen 98 LKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPA 176 (608)
T ss_pred HHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHH
Confidence 2234566776666655 88888887663 122223333444 333434479999999988876542 2444
Q ss_pred HHHHHHHHHHHH--HcCCHHHHHHHHHHHHHc--CC-------CCCHHHHHHHHHHH--HhcCCHHHHHHHHHHH
Q 007695 397 LESCTLLVEAYG--QAGDPDQARSNFDYMIRL--GH-------KPDDRCTASMIAAY--GKKNLLDKALNLLLEL 458 (592)
Q Consensus 397 ~~~~~~Li~~~~--~~g~~~~A~~lf~~m~~~--g~-------~pd~~t~~~li~a~--~~~g~~~~A~~l~~~m 458 (592)
..++..++.+.. +.+..+.+.+..+.+... ++ .|...+|..++..+ ...|++..+...++++
T Consensus 177 ~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 177 VFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555656655544 445567777777766442 11 23456677776655 4567777776665554
No 329
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=60.63 E-value=24 Score=21.78 Aligned_cols=27 Identities=7% Similarity=-0.124 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 007695 539 DFERIINGLLAGGFLQDAQRVHGLMEA 565 (592)
Q Consensus 539 ~~~~li~a~~~~g~~~~A~~l~~~m~~ 565 (592)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 466677777777777777777777654
No 330
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=59.72 E-value=2e+02 Score=29.08 Aligned_cols=30 Identities=13% Similarity=0.288 Sum_probs=21.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 007695 255 TNVRDYSKLIDAHAKENCLEDAERILKKMNEN 286 (592)
Q Consensus 255 p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~ 286 (592)
++...|.++... +.++++++....+.....
T Consensus 29 ~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~ 58 (352)
T PF02259_consen 29 PEYSFYRALLAL--RQGDYDEAKKYIEKARQL 58 (352)
T ss_pred hhHHHHHHHHHH--hCccHHHHHHHHHHHHHH
Confidence 455556666554 889999999888887653
No 331
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.02 E-value=94 Score=34.01 Aligned_cols=133 Identities=17% Similarity=0.119 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007695 259 DYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYV 338 (592)
Q Consensus 259 ~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~ 338 (592)
.-+.+++.+-+.|-.++|+++- +|..- -.....+.|+++.|.++..+.. +..-|..|..+..
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s---------~D~d~---rFelal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al 677 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELS---------TDPDQ---RFELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAAL 677 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcC---------CChhh---hhhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHh
Confidence 4577888888888888777642 33322 1233457899999988876654 6778999999999
Q ss_pred HcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007695 339 NAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARS 418 (592)
Q Consensus 339 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~ 418 (592)
..+++..|.+.|....+ |..|+-.+...|+-+....+-....+.| ..|.. ..+|...|+++++.+
T Consensus 678 ~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g-~~N~A-----F~~~~l~g~~~~C~~ 742 (794)
T KOG0276|consen 678 SAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG-KNNLA-----FLAYFLSGDYEECLE 742 (794)
T ss_pred hcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc-ccchH-----HHHHHHcCCHHHHHH
Confidence 99999999999987654 4567777888888887777777777776 33332 345777899999999
Q ss_pred HHHHHH
Q 007695 419 NFDYMI 424 (592)
Q Consensus 419 lf~~m~ 424 (592)
++..-.
T Consensus 743 lLi~t~ 748 (794)
T KOG0276|consen 743 LLISTQ 748 (794)
T ss_pred HHHhcC
Confidence 887653
No 332
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=57.94 E-value=31 Score=34.83 Aligned_cols=53 Identities=13% Similarity=0.019 Sum_probs=35.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007695 440 AAYGKKNLLDKALNLLLELEKDGFEP-GPATYTVLVDWLGRLQLINEAEQLLGKIS 494 (592)
Q Consensus 440 ~a~~~~g~~~~A~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~m~ 494 (592)
+-|.+.|.+++|+..|..-.. +.| |++++..-..+|.+..++..|+.=....+
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai 158 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAI 158 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 357777888888877776544 345 67777777777777777776655444443
No 333
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=57.20 E-value=14 Score=22.55 Aligned_cols=23 Identities=9% Similarity=-0.035 Sum_probs=11.4
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHH
Q 007695 543 IINGLLAGGFLQDAQRVHGLMEA 565 (592)
Q Consensus 543 li~a~~~~g~~~~A~~l~~~m~~ 565 (592)
+..++.+.|++++|.+.|+++.+
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHH
Confidence 34444445555555555555443
No 334
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=56.86 E-value=1.3e+02 Score=28.21 Aligned_cols=90 Identities=9% Similarity=0.040 Sum_probs=46.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007695 300 HMYSKAGNLDRAKEAFESLRSHGFQPD-----KKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ 374 (592)
Q Consensus 300 ~~~~~~g~~~~A~~~~~~m~~~g~~pd-----~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~ 374 (592)
+-+.++|++++|..-|...+..- ++. .+.|..-..++.+.+.++.|+.--...++.+.. .......-..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHh
Confidence 34567788888888887777652 211 123444444555666666666555555554311 11222222334555
Q ss_pred CCCHHHHHHHHHHHHHc
Q 007695 375 CGDVRGAGQITNIMRIE 391 (592)
Q Consensus 375 ~g~~~~A~~~~~~m~~~ 391 (592)
...+++|+.=|+.+...
T Consensus 181 ~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILES 197 (271)
T ss_pred hhhHHHHHHHHHHHHHh
Confidence 55555555555555544
No 335
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=56.42 E-value=1.2e+02 Score=29.97 Aligned_cols=87 Identities=11% Similarity=0.034 Sum_probs=36.9
Q ss_pred HHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----
Q 007695 334 IMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQ---- 409 (592)
Q Consensus 334 i~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~---- 409 (592)
|.+++..+++.+++...-+.-+..-+..+.+.-.-|-.|.+.+....+.++-..-....-.-+...|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 4455555555555544433322211222233333344455555555555544444433222223334444444433
Q ss_pred -cCCHHHHHHHH
Q 007695 410 -AGDPDQARSNF 420 (592)
Q Consensus 410 -~g~~~~A~~lf 420 (592)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 34555554444
No 336
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=56.31 E-value=1.4e+02 Score=27.56 Aligned_cols=14 Identities=14% Similarity=0.458 Sum_probs=5.8
Q ss_pred CCCHHHHHHHHHHH
Q 007695 324 QPDKKVYNSMIMAY 337 (592)
Q Consensus 324 ~pd~~t~~~li~a~ 337 (592)
.|+..+|+.-+...
T Consensus 110 ~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 110 DPNNELYRKSLEMA 123 (186)
T ss_dssp -TT-HHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 45555555444443
No 337
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=55.59 E-value=1.3e+02 Score=29.76 Aligned_cols=86 Identities=12% Similarity=0.081 Sum_probs=53.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH-
Q 007695 438 MIAAYGKKNLLDKALNLLLELEKD--GFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYAR- 514 (592)
Q Consensus 438 li~a~~~~g~~~~A~~l~~~m~~~--g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~- 514 (592)
=|.+++..|++.+++...-+--+. .++|. ..-.-|-.|.+.+.+..+.++-.......-.-+..-|..++..|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpk--IleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPK--ILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHH--HHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHH
Confidence 367788888888877665544333 34443 3344444578888888777777766554333234446666666654
Q ss_pred ----cCCHHHHHHHH
Q 007695 515 ----AGIEKKALQAL 525 (592)
Q Consensus 515 ----~g~~~~A~~~~ 525 (592)
.|.+++|.++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 57888887765
No 338
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=55.10 E-value=1.5e+02 Score=26.21 Aligned_cols=80 Identities=10% Similarity=0.092 Sum_probs=37.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHHHHHH
Q 007695 365 YLALLRSFAQCGDVRGAGQITNIMRIEEF-----QPTLESCTLLVEAYGQAGD-PDQARSNFDYMIRLGHKPDDRCTASM 438 (592)
Q Consensus 365 ~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~-----~~~~~~~~~Li~~~~~~g~-~~~A~~lf~~m~~~g~~pd~~t~~~l 438 (592)
.++++.-....++......+++.+..... ..+...|.+++.+..+..- ---+..+|+-|++.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 45666666666666666666665532110 1223344444444433333 22334444444444444444445444
Q ss_pred HHHHHh
Q 007695 439 IAAYGK 444 (592)
Q Consensus 439 i~a~~~ 444 (592)
|.++.+
T Consensus 122 i~~~l~ 127 (145)
T PF13762_consen 122 IKAALR 127 (145)
T ss_pred HHHHHc
Confidence 444433
No 339
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=54.94 E-value=2.4e+02 Score=28.57 Aligned_cols=122 Identities=9% Similarity=0.004 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH---cCCHHHHHHHH
Q 007695 449 DKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYAR---AGIEKKALQAL 525 (592)
Q Consensus 449 ~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~---~g~~~~A~~~~ 525 (592)
+.-+.++++..+.+ +-+......++..+.+..+.+...+-++++...... +...|...++.... .-.++....+|
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 34455666655542 244555666666677777777777777777665433 56666666665544 22345555554
Q ss_pred HHHHH----c--CC----CCCHH-------HHHHHHHHHHhCCCHHHHHHHHHHHHHCCC-CCCH
Q 007695 526 GFLEA----K--KE----QMGPD-------DFERIINGLLAGGFLQDAQRVHGLMEAQGF-AASE 572 (592)
Q Consensus 526 ~~m~~----~--~~----~~~~~-------~~~~li~a~~~~g~~~~A~~l~~~m~~~g~-~pd~ 572 (592)
.+... . +. .+.+. .+..+..-+.+.|..+.|+.+++.+.+.++ .|+.
T Consensus 126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P~~ 190 (321)
T PF08424_consen 126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFRPES 190 (321)
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCCccc
Confidence 43221 1 00 01111 234444556689999999999999998876 4444
No 340
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=54.77 E-value=36 Score=20.93 Aligned_cols=27 Identities=26% Similarity=0.335 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007695 399 SCTLLVEAYGQAGDPDQARSNFDYMIR 425 (592)
Q Consensus 399 ~~~~Li~~~~~~g~~~~A~~lf~~m~~ 425 (592)
+|..+...|.+.|++++|...|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455556666666666666666665554
No 341
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=53.79 E-value=4.1e+02 Score=30.77 Aligned_cols=197 Identities=15% Similarity=0.080 Sum_probs=110.5
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCC-------HHHHHHHH-HHHHHcCCHHHHHHHHHHHHHc----CCCCCHHHHHHHH
Q 007695 372 FAQCGDVRGAGQITNIMRIEEFQPT-------LESCTLLV-EAYGQAGDPDQARSNFDYMIRL----GHKPDDRCTASMI 439 (592)
Q Consensus 372 ~~~~g~~~~A~~~~~~m~~~g~~~~-------~~~~~~Li-~~~~~~g~~~~A~~lf~~m~~~----g~~pd~~t~~~li 439 (592)
.....++++|..+..++...-..|+ ...++.+- ......|+++.|.++-+..... -..+..+.+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 3456789999998888765422222 12344432 2234578889998888776553 2344567777788
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-----HHHHHcCCH--HHHHHHHHHHHhc-----CC-CCCHHHHH
Q 007695 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV-----DWLGRLQLI--NEAEQLLGKISEL-----GE-APPFKIQV 506 (592)
Q Consensus 440 ~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li-----~~~~~~g~~--~~A~~l~~~m~~~-----g~-~p~~~~~~ 506 (592)
.+..-.|++++|..+..+..+..-.-+...|.... ..+...|.. .+....+...... .. .+-..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 88888999999999888766542233433333222 234556633 2333333333221 11 12234555
Q ss_pred HHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHH-H---HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC
Q 007695 507 SLCDMYARAG-IEKKALQALGFLEAKKEQMGPD-D---FERIINGLLAGGFLQDAQRVHGLMEAQGFAA 570 (592)
Q Consensus 507 ~Li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~-~---~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p 570 (592)
.+..++.+.. ...++..-+...... .|.+. . +..|...+...|+.++|...++++......+
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~--~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~ 651 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVY--TPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNG 651 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhc--ccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 5666665521 112222222222222 22222 1 2356778888999999999999888654444
No 342
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=53.66 E-value=1.3e+02 Score=24.88 Aligned_cols=51 Identities=18% Similarity=0.023 Sum_probs=23.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007695 406 AYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG 462 (592)
Q Consensus 406 ~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g 462 (592)
.+.+.|++++|..+.+.+ +.||...|..+- -.+.|..+++..-+.+|...|
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw~ALc--e~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPWLALC--EWRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHHHHHH--HHhhccHHHHHHHHHHHHhCC
Confidence 344555555555554443 235555554332 224444454444444444443
No 343
>KOG4479 consensus Transcription factor e(y)2 [Transcription]
Probab=53.32 E-value=6.9 Score=30.09 Aligned_cols=20 Identities=35% Similarity=0.665 Sum_probs=14.2
Q ss_pred HHHHHhhcccCc--------hHHHHHhh
Q 007695 56 RKKEKMKGFLQS--------DKVKEMSR 75 (592)
Q Consensus 56 ~~~~~~~~~~~~--------~~~~~~~~ 75 (592)
+-|+++|..||+ |+||+|||
T Consensus 15 gdr~~lKeLL~trLvECGW~d~ik~mcr 42 (92)
T KOG4479|consen 15 GDRAALKELLHTRLVECGWHDDIKEMCR 42 (92)
T ss_pred ccHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 345666666664 78999998
No 344
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=53.27 E-value=3.3e+02 Score=29.50 Aligned_cols=181 Identities=11% Similarity=0.018 Sum_probs=126.5
Q ss_pred CCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 007695 324 QPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLL 403 (592)
Q Consensus 324 ~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L 403 (592)
..|....-+++..+..+....-+..+-.+|...| -+.-.|..++++|... .-+.-..+++++.+.. .|......-
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~d--fnDvv~~Re 137 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYD--FNDVVIGRE 137 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc--chhHHHHHH
Confidence 3466677889999999989999999999999865 4778899999999988 5577788888888774 344444444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCC--C---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHH
Q 007695 404 VEAYGQAGDPDQARSNFDYMIRLGHKP--D---DRCTASMIAAYGKKNLLDKALNLLLELEKD-GFEPGPATYTVLVDWL 477 (592)
Q Consensus 404 i~~~~~~g~~~~A~~lf~~m~~~g~~p--d---~~t~~~li~a~~~~g~~~~A~~l~~~m~~~-g~~p~~~ty~~li~~~ 477 (592)
+..+...++.+.+...|.+....=+.. + ...|.-++.. -..+.+..+.+...+... |..--...+.-+-.-|
T Consensus 138 La~~yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 138 LADKYEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 444445588889999998876642210 1 1234444322 145677777777777655 5555566677777888
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 007695 478 GRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512 (592)
Q Consensus 478 ~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~ 512 (592)
....++++|.+++..+.+...+ |...-..++.-+
T Consensus 216 s~~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~~l 249 (711)
T COG1747 216 SENENWTEAIRILKHILEHDEK-DVWARKEIIENL 249 (711)
T ss_pred ccccCHHHHHHHHHHHhhhcch-hhhHHHHHHHHH
Confidence 8999999999999988876554 555555555443
No 345
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=52.48 E-value=3.2e+02 Score=29.21 Aligned_cols=125 Identities=11% Similarity=0.139 Sum_probs=71.1
Q ss_pred HHHHHHcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 007695 264 IDAHAKENCLEDAE-RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQ 342 (592)
Q Consensus 264 i~~~~~~g~~~~A~-~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~ 342 (592)
|.-....|++-.|- +++.-+....-.|+....- ...+...|+++.+.+.+...... +.-...+..++++...+.|+
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~--~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r 372 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLR--SVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLAR 372 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHH--HHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhh
Confidence 44444556665554 3444444443334443322 23345667777777766554422 12344566677777777777
Q ss_pred chHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 007695 343 PKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392 (592)
Q Consensus 343 ~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g 392 (592)
+++|..+-.-|+...+. ++..........-..|-++++.-.++++...+
T Consensus 373 ~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 373 WREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 77777777777766555 45554444444455566677777777665544
No 346
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.48 E-value=4e+02 Score=30.32 Aligned_cols=64 Identities=9% Similarity=0.048 Sum_probs=30.5
Q ss_pred ccCCchhHHHHHHhhcCCCHhhHHHHHHHHHhhCHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHH
Q 007695 203 KEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAK 269 (592)
Q Consensus 203 ~~g~~~~A~~~~~~~~~p~~~t~~~lL~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~ 269 (592)
-.|++++|-...-.|..-+..-|---+.-++..+. ...+-..+....-..+...|..++..+..
T Consensus 404 ~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~---l~~Ia~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 404 FEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQ---LTDIAPYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred hcchHHHHHhhhHHHhcchHHHHHHHHHHhccccc---cchhhccCCCCCcccCchHHHHHHHHHHH
Confidence 56666777666666665555555544444332221 00001111111112345567777777666
No 347
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=51.68 E-value=2.7e+02 Score=28.01 Aligned_cols=19 Identities=16% Similarity=0.344 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHcCCHHHH
Q 007695 398 ESCTLLVEAYGQAGDPDQA 416 (592)
Q Consensus 398 ~~~~~Li~~~~~~g~~~~A 416 (592)
..|..|+.+++..|+.+-.
T Consensus 322 K~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 322 KQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred HhhhHHHHHHhcCChHHHH
Confidence 4566666666666665544
No 348
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=50.65 E-value=1.1e+02 Score=26.42 Aligned_cols=47 Identities=17% Similarity=0.140 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 007695 485 EAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAK 531 (592)
Q Consensus 485 ~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~ 531 (592)
+..+-++.+....+.|++.+...-+.+|.+-+++..|.++|+-+..+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 45555666666667777777777777777777777777777776654
No 349
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=50.43 E-value=33 Score=23.41 Aligned_cols=23 Identities=22% Similarity=0.138 Sum_probs=11.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 007695 508 LCDMYARAGIEKKALQALGFLEA 530 (592)
Q Consensus 508 Li~~~~~~g~~~~A~~~~~~m~~ 530 (592)
|..+|...|+.+.|..+++++..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34445555555555555555443
No 350
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=50.30 E-value=2.5e+02 Score=27.21 Aligned_cols=124 Identities=14% Similarity=0.034 Sum_probs=62.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 007695 403 LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQL 482 (592)
Q Consensus 403 Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~ 482 (592)
-+..|.+.-++.-|-..++++.+ | ..+ .+.|--|.+..+..-..++..-....++.-+..-+..++ +...|+
T Consensus 136 tMEiyS~ttRFalaCN~s~KIiE----P-IQS-RCAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GD 207 (333)
T KOG0991|consen 136 TMEIYSNTTRFALACNQSEKIIE----P-IQS-RCAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGD 207 (333)
T ss_pred HHHHHcccchhhhhhcchhhhhh----h-HHh-hhHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccch
Confidence 34555555555555554444433 2 111 122334455555444444444444445555555555554 456677
Q ss_pred HHHHHHHHHHHHhc------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 007695 483 INEAEQLLGKISEL------------GEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQM 535 (592)
Q Consensus 483 ~~~A~~l~~~m~~~------------g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~ 535 (592)
..+|...++.-... --.|.+.....++..|. .+++++|.+++.++-+.|..|
T Consensus 208 MRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp 271 (333)
T KOG0991|consen 208 MRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSP 271 (333)
T ss_pred HHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCH
Confidence 77777666654321 11344545555555443 356677777777666665544
No 351
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=49.77 E-value=2.8e+02 Score=27.64 Aligned_cols=128 Identities=14% Similarity=0.162 Sum_probs=0.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH-------HHHHHHHHcCCchHHHHHH----HHHHHCCCCCCHHHHH
Q 007695 298 LVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYN-------SMIMAYVNAGQPKLGMSLV----DMMITSGIERSEEIYL 366 (592)
Q Consensus 298 Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~-------~li~a~~~~g~~~~A~~l~----~~m~~~g~~p~~~t~~ 366 (592)
+.+-..+.+++++|...|.++...|+..|..+.| .+...|...|+....-++. ..|.+-.-+-..-...
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Q ss_pred HHHHHHHhCCC-HHHHHHHHHHHHHcCCCCCHHHH-----HHHHHHHHHcCCHHHHHHHHHHHHH
Q 007695 367 ALLRSFAQCGD-VRGAGQITNIMRIEEFQPTLESC-----TLLVEAYGQAGDPDQARSNFDYMIR 425 (592)
Q Consensus 367 ~Ll~~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~~-----~~Li~~~~~~g~~~~A~~lf~~m~~ 425 (592)
+|+..+....+ ++....+.....+....-..... .-+|..+.+.|.+.+|+.+.+.+..
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ 153 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLH 153 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
No 352
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=49.75 E-value=24 Score=20.68 Aligned_cols=18 Identities=33% Similarity=0.451 Sum_probs=8.8
Q ss_pred HHHHHHhCCCHHHHHHHH
Q 007695 543 IINGLLAGGFLQDAQRVH 560 (592)
Q Consensus 543 li~a~~~~g~~~~A~~l~ 560 (592)
+..++...|+.++|..++
T Consensus 7 la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 7 LARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 444445555555554444
No 353
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=49.46 E-value=3.6e+02 Score=30.27 Aligned_cols=18 Identities=28% Similarity=0.388 Sum_probs=8.7
Q ss_pred HHHHHHHcCCHHHHHHHH
Q 007695 298 LVHMYSKAGNLDRAKEAF 315 (592)
Q Consensus 298 Li~~~~~~g~~~~A~~~~ 315 (592)
+|-.|.++|++++|.++.
T Consensus 117 ~Iyy~LR~G~~~~A~~~~ 134 (613)
T PF04097_consen 117 LIYYCLRCGDYDEALEVA 134 (613)
T ss_dssp HHHHHHTTT-HHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHH
Confidence 444445555555555555
No 354
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.85 E-value=2.3e+02 Score=26.50 Aligned_cols=93 Identities=16% Similarity=0.026 Sum_probs=59.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Q 007695 473 LVDWLGRLQLINEAEQLLGKISELGEAPPF--KIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAG 550 (592)
Q Consensus 473 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~ 550 (592)
+...+...+++++|..-++......-.-+. .+--.|.......|.+++|+.+++.....+.. ......-...+...
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~k 172 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAK 172 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHc
Confidence 344567778888888888776643211111 12223455666788888888888776554321 12233345778888
Q ss_pred CCHHHHHHHHHHHHHCC
Q 007695 551 GFLQDAQRVHGLMEAQG 567 (592)
Q Consensus 551 g~~~~A~~l~~~m~~~g 567 (592)
|+.++|..-|++.+..+
T Consensus 173 g~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 173 GDKQEARAAYEKALESD 189 (207)
T ss_pred CchHHHHHHHHHHHHcc
Confidence 88888888888888776
No 355
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=48.41 E-value=3.5e+02 Score=28.47 Aligned_cols=61 Identities=18% Similarity=0.161 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC--C-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007695 259 DYSKLIDAHAKENCLEDAERILKKMNEN--G-----IVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319 (592)
Q Consensus 259 ~y~~Li~~~~~~g~~~~A~~l~~~m~~~--g-----~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~ 319 (592)
+...|++.++-.|++..|+++++.+.-. + ..-.+.+|-.+.-+|.-.+++.+|.++|....
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888899999999998876321 1 11234566778888888999999999998776
No 356
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=47.53 E-value=3.4e+02 Score=28.00 Aligned_cols=56 Identities=20% Similarity=0.114 Sum_probs=33.0
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH----HHHHHhCCCHHHHHHHHHHHHHCC
Q 007695 512 YARAGIEKKALQALGFLEAKKEQMGPDDFERI----INGLLAGGFLQDAQRVHGLMEAQG 567 (592)
Q Consensus 512 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l----i~a~~~~g~~~~A~~l~~~m~~~g 567 (592)
+.+-++..-|...+..+..+++..=..+|.+| |....+.+..++|.+..-+|.+.|
T Consensus 287 F~kDnnt~l~k~av~sl~k~nI~rltktF~sLsL~dIA~~vQLa~~qevek~Ilqmie~~ 346 (422)
T KOG2582|consen 287 FTKDNNTGLAKQAVSSLYKKNIQRLTKTFLSLSLSDIASRVQLASAQEVEKYILQMIEDG 346 (422)
T ss_pred HhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence 34556666666666666555443333455554 344456677788888777777654
No 357
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=47.38 E-value=1.7e+02 Score=24.47 Aligned_cols=79 Identities=18% Similarity=0.070 Sum_probs=37.6
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007695 377 DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456 (592)
Q Consensus 377 ~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~ 456 (592)
..++|..|.+-+...+ .....+--+-+..+.+.|+|++|. .. ......||...|.++ +-.+.|..+++...+.
T Consensus 21 cH~EA~tIa~wL~~~~-~~~E~v~lIr~~sLmNrG~Yq~AL---l~-~~~~~~pdL~p~~AL--~a~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 21 CHQEANTIADWLEQEG-EMEEVVALIRLSSLMNRGDYQEAL---LL-PQCHCYPDLEPWAAL--CAWKLGLASALESRLT 93 (116)
T ss_dssp -HHHHHHHHHHHHHTT-TTHHHHHHHHHHHHHHTT-HHHHH---HH-HTTS--GGGHHHHHH--HHHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHH---Hh-cccCCCccHHHHHHH--HHHhhccHHHHHHHHH
Confidence 3556666666666554 122222333344566667777661 11 111234666666544 3346666666666666
Q ss_pred HHHHCC
Q 007695 457 ELEKDG 462 (592)
Q Consensus 457 ~m~~~g 462 (592)
++...|
T Consensus 94 rla~~g 99 (116)
T PF09477_consen 94 RLASSG 99 (116)
T ss_dssp HHCT-S
T ss_pred HHHhCC
Confidence 665444
No 358
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.14 E-value=5.1e+02 Score=30.29 Aligned_cols=116 Identities=9% Similarity=0.088 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhCCCH--HHHHHHHHHHHHcCCCCCHHHH---
Q 007695 329 VYNSMIMAYVNAGQPKLGMSLVDMMITSG---IERSEEIYLALLRSFAQCGDV--RGAGQITNIMRIEEFQPTLESC--- 400 (592)
Q Consensus 329 t~~~li~a~~~~g~~~~A~~l~~~m~~~g---~~p~~~t~~~Ll~~~~~~g~~--~~A~~~~~~m~~~g~~~~~~~~--- 400 (592)
-|..|+..|...|+.++|++++.+..+.. ..--..-+-.++..+.+.+.. +-.++.-+-..+..-......+
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 46777777888888888888887776521 000111222233333333332 2333222222211100000000
Q ss_pred ---------HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 007695 401 ---------TLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGK 444 (592)
Q Consensus 401 ---------~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~ 444 (592)
...+-.|......+-+...++.+....-.++..-.+.++.-|+.
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 01233455666677777777777765555566666666666654
No 359
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=46.55 E-value=61 Score=32.80 Aligned_cols=54 Identities=15% Similarity=0.177 Sum_probs=35.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHH
Q 007695 299 VHMYSKAGNLDRAKEAFESLRSHGFQP-DKKVYNSMIMAYVNAGQPKLGMSLVDMMI 354 (592)
Q Consensus 299 i~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~li~a~~~~g~~~~A~~l~~~m~ 354 (592)
.+-|.+.|.+++|.+.|...... .| |.+++..-..+|.+...+..|..--...+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai 158 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAI 158 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 35666777777777777765543 34 77777777777777777766655444443
No 360
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.28 E-value=5.3e+02 Score=29.89 Aligned_cols=69 Identities=13% Similarity=0.202 Sum_probs=37.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 007695 262 KLIDAHAKENCLEDAERILKKMNENGIVPDI--VTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVN 339 (592)
Q Consensus 262 ~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~ 339 (592)
.+=..|...|+++.|+++-.. .|+. .++..=...|.+.+++..|-++|.++.+ .|..+.--+..
T Consensus 363 ~vWk~yLd~g~y~kAL~~ar~------~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~--------~FEEVaLKFl~ 428 (911)
T KOG2034|consen 363 DVWKTYLDKGEFDKALEIART------RPDALETVLLKQADFLFQDKEYLRAAEIYAETLS--------SFEEVALKFLE 428 (911)
T ss_pred HHHHHHHhcchHHHHHHhccC------CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh--------hHHHHHHHHHh
Confidence 344556777888777764332 2232 1233334455666777777777777642 34444444444
Q ss_pred cCCch
Q 007695 340 AGQPK 344 (592)
Q Consensus 340 ~g~~~ 344 (592)
..+.+
T Consensus 429 ~~~~~ 433 (911)
T KOG2034|consen 429 INQER 433 (911)
T ss_pred cCCHH
Confidence 44444
No 361
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=45.85 E-value=69 Score=25.03 Aligned_cols=16 Identities=13% Similarity=-0.068 Sum_probs=6.4
Q ss_pred HHHHHHHHHHcCCHHH
Q 007695 470 YTVLVDWLGRLQLINE 485 (592)
Q Consensus 470 y~~li~~~~~~g~~~~ 485 (592)
+..++.+|+..|++.+
T Consensus 46 lG~l~qA~~e~Gkyr~ 61 (80)
T PF10579_consen 46 LGYLIQAHMEWGKYRE 61 (80)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444433
No 362
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=44.85 E-value=4.3e+02 Score=28.50 Aligned_cols=98 Identities=9% Similarity=0.032 Sum_probs=57.4
Q ss_pred CCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 007695 464 EPGPATY-TVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY---ARAGIEKKALQALGFLEAKKEQMGPDD 539 (592)
Q Consensus 464 ~p~~~ty-~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~---~~~g~~~~A~~~~~~m~~~~~~~~~~~ 539 (592)
.|+..|+ +.+++.+-..|-...|..++..+... .+|+...|..+|..= ..+| ..-+...++.+... ..-++..
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~-fg~d~~l 532 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALRE-FGADSDL 532 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHH-hCCChHH
Confidence 3444443 34556666667777777777777665 334666666655432 2222 56666666666543 3356667
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHH
Q 007695 540 FERIINGLLAGGFLQDAQRVHGLME 564 (592)
Q Consensus 540 ~~~li~a~~~~g~~~~A~~l~~~m~ 564 (592)
|.-.+.-=...|..+.+-.++.+..
T Consensus 533 w~~y~~~e~~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 533 WMDYMKEELPLGRPENCGQIYWRAM 557 (568)
T ss_pred HHHHHHhhccCCCcccccHHHHHHH
Confidence 7666666667777776666655443
No 363
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=44.53 E-value=45 Score=22.76 Aligned_cols=21 Identities=29% Similarity=0.536 Sum_probs=9.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 007695 299 VHMYSKAGNLDRAKEAFESLR 319 (592)
Q Consensus 299 i~~~~~~g~~~~A~~~~~~m~ 319 (592)
..+|...|+.+.|.+++++..
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHH
Confidence 334444444444444444444
No 364
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=43.42 E-value=3.5e+02 Score=27.03 Aligned_cols=35 Identities=20% Similarity=0.321 Sum_probs=20.9
Q ss_pred HHcccccC--CchhHHHHHHhh--cCCCHhhHHHHHHHH
Q 007695 198 ILSLEKEE--DPSPLLAEWKEL--LQPSRIDWINLLDRL 232 (592)
Q Consensus 198 l~~~~~~g--~~~~A~~~~~~~--~~p~~~t~~~lL~~~ 232 (592)
+.++.+.| .+..++++...+ .+++...|..++..+
T Consensus 45 ~~al~~~g~~~~~~~l~l~~~~~~~E~~~~vw~~~~~~l 83 (324)
T PF11838_consen 45 LFALARAGRLSYSDFLDLLEYLLPNETDYVVWSTALSNL 83 (324)
T ss_dssp HHHHHHTTSS-HHHHHHHHGGG-GT--SHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHhccCCCchHHHHHHHHHH
Confidence 33444444 456777777766 467778888887765
No 365
>PRK12798 chemotaxis protein; Reviewed
Probab=43.36 E-value=4.2e+02 Score=27.90 Aligned_cols=193 Identities=17% Similarity=0.108 Sum_probs=93.1
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHH
Q 007695 375 CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYG-QAGDPDQARSNFDYMIRLGHKPDD----RCTASMIAAYGKKNLLD 449 (592)
Q Consensus 375 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~-~~g~~~~A~~lf~~m~~~g~~pd~----~t~~~li~a~~~~g~~~ 449 (592)
.|+..++.+.+..+.....++....|-.|+.+-. ...+..+|+.+|+..+-. .|-+ .....-|....+.|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 4666666666666665555556666666555433 334566666666665542 1222 22333344456666666
Q ss_pred HHHHHHHHHHHC-CCCCCHHHHH-HHHHHHHHcCC---HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007695 450 KALNLLLELEKD-GFEPGPATYT-VLVDWLGRLQL---INEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQA 524 (592)
Q Consensus 450 ~A~~l~~~m~~~-g~~p~~~ty~-~li~~~~~~g~---~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~ 524 (592)
++..+-.+-... ...|-..-|. .+..++.+..+ .+....++..|. ..--..+|..+...-...|+.+-|...
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d---~~~q~~lYL~iAR~Ali~Gk~~lA~~A 279 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMD---PERQRELYLRIARAALIDGKTELARFA 279 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcC---chhHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 655444333222 2222222222 22222222222 222222222221 111345677777777777777777766
Q ss_pred HHHHHHcCCCCCHH-HHHHHHHH--HHhCCCHHHHHHHHHHHHHCCCCCCH
Q 007695 525 LGFLEAKKEQMGPD-DFERIING--LLAGGFLQDAQRVHGLMEAQGFAASE 572 (592)
Q Consensus 525 ~~~m~~~~~~~~~~-~~~~li~a--~~~~g~~~~A~~l~~~m~~~g~~pd~ 572 (592)
-++........+.. .-..+-.+ -.-..+.+++.+.+..+-...+.|..
T Consensus 280 s~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L~~~D 330 (421)
T PRK12798 280 SERALKLADPDSADAARARLYRGAALVASDDAESALEELSQIDRDKLSERD 330 (421)
T ss_pred HHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhCChhh
Confidence 66655432221111 11111111 22345577777777777666666655
No 366
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=43.26 E-value=1.8e+02 Score=27.33 Aligned_cols=90 Identities=16% Similarity=0.065 Sum_probs=43.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHH
Q 007695 405 EAYGQAGDPDQARSNFDYMIRLGHKP----DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPG-PATYTVLVDWLGR 479 (592)
Q Consensus 405 ~~~~~~g~~~~A~~lf~~m~~~g~~p----d~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~ 479 (592)
+-+.+.|++++|..-|......-+.. ..+.|..-..++.+.+.++.|+.--...++.+ |+ ......-..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHHHh
Confidence 44556666666666666665532111 12334444445555666666655544444422 21 1111222234555
Q ss_pred cCCHHHHHHHHHHHHhc
Q 007695 480 LQLINEAEQLLGKISEL 496 (592)
Q Consensus 480 ~g~~~~A~~l~~~m~~~ 496 (592)
...+++|+.=|+.+.+.
T Consensus 181 ~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILES 197 (271)
T ss_pred hhhHHHHHHHHHHHHHh
Confidence 55566666666555554
No 367
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=43.23 E-value=4.9e+02 Score=28.64 Aligned_cols=290 Identities=14% Similarity=0.096 Sum_probs=147.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhC-CCC-CCHHHHHHHHHH
Q 007695 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYS-KAGNLDRAKEAFESLRSH-GFQ-PDKKVYNSMIMA 336 (592)
Q Consensus 260 y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~-~~g~~~~A~~~~~~m~~~-g~~-pd~~t~~~li~a 336 (592)
|......=.+.|..+.+.++|++-... ++.....|...+..+. ..|+.+...+.|+..... |.. .+...|...|.-
T Consensus 82 W~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~ 160 (577)
T KOG1258|consen 82 WKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEF 160 (577)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHH
Confidence 344444445566667777777766552 4445555544443332 345666666666665532 211 233455566655
Q ss_pred HHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHH---HhC------CCHHHHHHHHHHHH------------------
Q 007695 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF---AQC------GDVRGAGQITNIMR------------------ 389 (592)
Q Consensus 337 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~---~~~------g~~~~A~~~~~~m~------------------ 389 (592)
-..++++.....+|++.++.... -|+..-.-| .+. ...+++.++-....
T Consensus 161 en~qks~k~v~~iyeRileiP~~----~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~ 236 (577)
T KOG1258|consen 161 ENGQKSWKRVANIYERILEIPLH----QLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIG 236 (577)
T ss_pred HhccccHHHHHHHHHHHHhhhhh----HhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHH
Confidence 55666666666666666553211 111111111 111 11222222111111
Q ss_pred --HcCCCCC--HHHHHHHH-------HHHHHcCCHHHHHHHHHHHHHc---CCCC----CHHHHHHHHHHHHhcCCHHHH
Q 007695 390 --IEEFQPT--LESCTLLV-------EAYGQAGDPDQARSNFDYMIRL---GHKP----DDRCTASMIAAYGKKNLLDKA 451 (592)
Q Consensus 390 --~~g~~~~--~~~~~~Li-------~~~~~~g~~~~A~~lf~~m~~~---g~~p----d~~t~~~li~a~~~~g~~~~A 451 (592)
..+-+.+ ....+.+- .+|-..-........|+.-... .++| +..+|..-+.--...|+.+.+
T Consensus 237 v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~ 316 (577)
T KOG1258|consen 237 VKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRV 316 (577)
T ss_pred HhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHH
Confidence 1110111 11111111 1222223333444444444332 1222 346777778888888999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 007695 452 LNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAK 531 (592)
Q Consensus 452 ~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~ 531 (592)
.-+|.+..-. +..-...|--.++.....|+.+-+..++....+...+-...+.-.-....-..|++..|..+++.+...
T Consensus 317 ~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e 395 (577)
T KOG1258|consen 317 FILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESE 395 (577)
T ss_pred HHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhh
Confidence 8888876432 222235556666666777898888888887766544322222222222234467999999999998876
Q ss_pred CCCCCHH-HHHHHHHHHHhCCCHHHHH
Q 007695 532 KEQMGPD-DFERIINGLLAGGFLQDAQ 557 (592)
Q Consensus 532 ~~~~~~~-~~~~li~a~~~~g~~~~A~ 557 (592)
- |+.. .-..-+....+.|..+.+.
T Consensus 396 ~--pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 396 Y--PGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred C--CchhhhHHHHHhHHHHhcchhhhh
Confidence 3 4422 2222345556778887777
No 368
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=43.07 E-value=57 Score=32.52 Aligned_cols=39 Identities=13% Similarity=0.293 Sum_probs=29.1
Q ss_pred CCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 007695 252 SFQTNVRD-YSKLIDAHAKENCLEDAERILKKMNENGIVP 290 (592)
Q Consensus 252 ~~~p~~~~-y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p 290 (592)
.+.|+..+ ||.-|....+.|++++|++++++.++.|+.-
T Consensus 251 ~v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~ 290 (303)
T PRK10564 251 PMLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTS 290 (303)
T ss_pred ccCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCch
Confidence 34456555 6788888888888888888888888887663
No 369
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.01 E-value=5.6e+02 Score=29.26 Aligned_cols=74 Identities=12% Similarity=0.056 Sum_probs=38.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 007695 264 IDAHAKENCLEDAERILKKMNENGIVP---DIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNA 340 (592)
Q Consensus 264 i~~~~~~g~~~~A~~l~~~m~~~g~~p---d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~ 340 (592)
|+-+.+.+.+++|+.+-+.... ..| -...+...|..+...|++++|-...-.|.. .+..-|--.+.-+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccc
Confidence 3445556666666655544332 222 223455566666666666666666666652 2444555555555444
Q ss_pred CCc
Q 007695 341 GQP 343 (592)
Q Consensus 341 g~~ 343 (592)
++.
T Consensus 437 ~~l 439 (846)
T KOG2066|consen 437 DQL 439 (846)
T ss_pred ccc
Confidence 443
No 370
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=41.37 E-value=2.8e+02 Score=25.59 Aligned_cols=43 Identities=19% Similarity=0.249 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 007695 448 LDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498 (592)
Q Consensus 448 ~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~ 498 (592)
+++|...|+.... ..|+..+|+.-+.... .|-.++.++.+.+.
T Consensus 96 F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~------kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 96 FEKATEYFQKAVD--EDPNNELYRKSLEMAA------KAPELHMEIHKQGL 138 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHH------THHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHh--cCCCcHHHHHHHHHHH------hhHHHHHHHHHHHh
Confidence 3444445544444 4677777777666542 35556666655443
No 371
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=40.87 E-value=78 Score=24.76 Aligned_cols=45 Identities=16% Similarity=0.090 Sum_probs=26.8
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHhCCCHHHHHHH
Q 007695 514 RAGIEKKALQALGFLEAKKEQMGPD---DFERIINGLLAGGFLQDAQRV 559 (592)
Q Consensus 514 ~~g~~~~A~~~~~~m~~~~~~~~~~---~~~~li~a~~~~g~~~~A~~l 559 (592)
...+..+|+..|+...++-.. .+. ++..++.+|+..|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~-~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITD-REDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777766655322 222 344566777777777776665
No 372
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=40.06 E-value=1.3e+02 Score=27.76 Aligned_cols=33 Identities=15% Similarity=0.140 Sum_probs=24.0
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 007695 533 EQMGPDDFERIINGLLAGGFLQDAQRVHGLMEA 565 (592)
Q Consensus 533 ~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~ 565 (592)
..|++..|..++.++...|+.++|.+..+++..
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456777777777777777777777777777764
No 373
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=39.59 E-value=1.6e+02 Score=26.06 Aligned_cols=57 Identities=18% Similarity=0.171 Sum_probs=23.8
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 007695 283 MNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNA 340 (592)
Q Consensus 283 m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~ 340 (592)
+++.|++++.. -..++..+...++.-.|.++|+.+.+.+...+..|...-+..+...
T Consensus 12 lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~ 68 (145)
T COG0735 12 LKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEA 68 (145)
T ss_pred HHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHC
Confidence 34444443332 2234444444444444555555555444333333333333433333
No 374
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.37 E-value=3.3e+02 Score=25.53 Aligned_cols=129 Identities=17% Similarity=0.040 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH---
Q 007695 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTA--SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYT--- 471 (592)
Q Consensus 397 ~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~--~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~--- 471 (592)
...|..++.... .+.+ +......++......-...++. .+...+...|++++|...++..... |....+.
T Consensus 54 S~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~ 128 (207)
T COG2976 54 SAQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALA 128 (207)
T ss_pred HHHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHH
Confidence 344555555443 2333 4444445555431111111222 2334567788888888887765542 2223333
Q ss_pred --HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 007695 472 --VLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKK 532 (592)
Q Consensus 472 --~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~ 532 (592)
.|.+.....|.+|+|+..++.....+.. ......-.+.+...|+-.+|+.-|+.....+
T Consensus 129 ~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 129 ALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 3445667778888888888877654432 2233444667888888888888888877764
No 375
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=39.36 E-value=43 Score=19.06 Aligned_cols=27 Identities=15% Similarity=-0.018 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 007695 539 DFERIINGLLAGGFLQDAQRVHGLMEA 565 (592)
Q Consensus 539 ~~~~li~a~~~~g~~~~A~~l~~~m~~ 565 (592)
.|..+...+...|++++|...|+...+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 466777778888888888888877654
No 376
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=39.31 E-value=1.6e+02 Score=24.56 Aligned_cols=26 Identities=8% Similarity=0.230 Sum_probs=17.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHH
Q 007695 540 FERIINGLLAGGFLQDAQRVHGLMEA 565 (592)
Q Consensus 540 ~~~li~a~~~~g~~~~A~~l~~~m~~ 565 (592)
|..|+..|...|..++|++++.+...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 66666666666666666666666655
No 377
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=38.98 E-value=1.1e+02 Score=21.18 Aligned_cols=33 Identities=6% Similarity=0.209 Sum_probs=16.9
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007695 267 HAKENCLEDAERILKKMNENGIVPDIVTSTVLV 299 (592)
Q Consensus 267 ~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li 299 (592)
..+.|-+.++..+++.|.+.|+.-+...|..++
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 334455555555555555555555555444444
No 378
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=37.80 E-value=4.5e+02 Score=26.65 Aligned_cols=117 Identities=12% Similarity=0.104 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHH
Q 007695 345 LGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQ---AGDPDQARSNFD 421 (592)
Q Consensus 345 ~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~---~g~~~~A~~lf~ 421 (592)
.-+.++++.++.+ +-+......+|..+.+..+.+...+-++.+.... +-+...|...|..... .-.++....+|.
T Consensus 49 ~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 49 RKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 3445555555542 2345555556666666666666666666665543 2345555555544333 123444444444
Q ss_pred HHHHc------CC----CCCHH-------HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 007695 422 YMIRL------GH----KPDDR-------CTASMIAAYGKKNLLDKALNLLLELEKDGF 463 (592)
Q Consensus 422 ~m~~~------g~----~pd~~-------t~~~li~a~~~~g~~~~A~~l~~~m~~~g~ 463 (592)
+.... +. .+-.. .+..+..-..++|..+.|+.+++-+.+.++
T Consensus 127 ~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 127 KCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 33221 11 00011 122223334567888999999888887654
No 379
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=36.85 E-value=1.6e+02 Score=32.74 Aligned_cols=134 Identities=12% Similarity=0.065 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 007695 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLC 509 (592)
Q Consensus 430 pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li 509 (592)
.+...-.-++..|.+.|..+.|..+.+.+-..-+ ...-|..-+..+.++|+...+..+...+.+.....+......++
T Consensus 403 ~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~~~~~~~~~~~~~ll 480 (566)
T PF07575_consen 403 DTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLLEEYCNNGEPLDDDLL 480 (566)
T ss_dssp -SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH-------------------------------
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHhcCCCcccHHHH
Confidence 3445555566677777777777766665543211 12345555555666666555544444443221111111112222
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHh
Q 007695 510 DMYARAGIEKKALQALGFLEAKKEQMGPDDFERIIN--GLLAGGFLQDAQRVHGLMEAQGFAASERLKVALIS 580 (592)
Q Consensus 510 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~--a~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~l~~ 580 (592)
+...... +...... -|..+-. -..+.|++.+|.+.+-.+....+.|......++..
T Consensus 481 ~~i~~~~-----------~~~~~L~----fla~yreF~~~~~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d 538 (566)
T PF07575_consen 481 DNIGSPM-----------LLSQRLS----FLAKYREFYELYDEGDFREAASLLVSLLKSPIAPKSFWPLLLCD 538 (566)
T ss_dssp -------------------------------------------------------------------------
T ss_pred HHhcchh-----------hhhhhhH----HHHHHHHHHHHHhhhhHHHHHHHHHHHHCCCCCcHHHHHHHHHH
Confidence 1111111 0000000 0111111 11344778888888777777777777644444433
No 380
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=36.36 E-value=1.6e+02 Score=27.26 Aligned_cols=31 Identities=29% Similarity=0.302 Sum_probs=14.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007695 464 EPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494 (592)
Q Consensus 464 ~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~ 494 (592)
.|++.+|..++.++...|+.++|.+..+++.
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444444444444444444444444443
No 381
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=36.28 E-value=2.9e+02 Score=30.33 Aligned_cols=59 Identities=10% Similarity=0.054 Sum_probs=27.9
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 007695 332 SMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE 391 (592)
Q Consensus 332 ~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~ 391 (592)
.|.+.+.+.|....|..++.+.+... ...+-++..+.++|....+++.|.+.|++..+.
T Consensus 647 ~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~ 705 (886)
T KOG4507|consen 647 NLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKL 705 (886)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhc
Confidence 33344444444445555554444432 223344445555555555555555555555444
No 382
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=36.12 E-value=1.3e+02 Score=20.85 Aligned_cols=31 Identities=19% Similarity=0.222 Sum_probs=14.0
Q ss_pred HcCCchHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007695 339 NAGQPKLGMSLVDMMITSGIERSEEIYLALL 369 (592)
Q Consensus 339 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll 369 (592)
+.|-.+++..++++|.+.|+..+...|..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 3344444444444444444444444444433
No 383
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=36.11 E-value=5.2e+02 Score=26.94 Aligned_cols=56 Identities=18% Similarity=0.088 Sum_probs=41.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHH--HcCCHHHHHHHHHHHHhC
Q 007695 265 DAHAKENCLEDAERILKKMNENGIVPDIV--TSTVLVHMYS--KAGNLDRAKEAFESLRSH 321 (592)
Q Consensus 265 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~--~~~~Li~~~~--~~g~~~~A~~~~~~m~~~ 321 (592)
..+.+.+++..|.++|+.+..+ ++++.. .+..+..+|. ..-++.+|.+.|+.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3455789999999999999987 665554 4555555553 567888999999987754
No 384
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=35.92 E-value=69 Score=23.62 Aligned_cols=20 Identities=10% Similarity=0.194 Sum_probs=7.5
Q ss_pred HHHHHHHcCCchHHHHHHHH
Q 007695 333 MIMAYVNAGQPKLGMSLVDM 352 (592)
Q Consensus 333 li~a~~~~g~~~~A~~l~~~ 352 (592)
+|.+|...|++++|.+++.+
T Consensus 29 vI~gllqlg~~~~a~eYi~~ 48 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKE 48 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 33334444444444433333
No 385
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=35.84 E-value=1.6e+02 Score=24.49 Aligned_cols=26 Identities=35% Similarity=0.459 Sum_probs=18.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007695 435 TASMIAAYGKKNLLDKALNLLLELEK 460 (592)
Q Consensus 435 ~~~li~a~~~~g~~~~A~~l~~~m~~ 460 (592)
|..++.-|...|..++|++++.++..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 66677777777777777777777655
No 386
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=35.64 E-value=3.8e+02 Score=29.73 Aligned_cols=11 Identities=0% Similarity=0.163 Sum_probs=6.5
Q ss_pred HHHHHhhcccc
Q 007695 169 AEKIHERGEMI 179 (592)
Q Consensus 169 ~~~~~ea~~~f 179 (592)
.|++++|..++
T Consensus 161 rG~~~~a~~lL 171 (566)
T PF07575_consen 161 RGLFDQARQLL 171 (566)
T ss_dssp TT-HHHHHHHH
T ss_pred cCCHHHHHHHH
Confidence 45666676666
No 387
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=35.63 E-value=8.6e+02 Score=29.32 Aligned_cols=82 Identities=16% Similarity=0.003 Sum_probs=45.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Q 007695 473 LVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGF 552 (592)
Q Consensus 473 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~ 552 (592)
.+.+|..+|++.+|+.+..++...... -..+-..|+.-+...+++-+|-++..+.... ....+..|++...
T Consensus 971 Al~a~~~~~dWr~~l~~a~ql~~~~de-~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~ 1041 (1265)
T KOG1920|consen 971 ALKAYKECGDWREALSLAAQLSEGKDE-LVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKE 1041 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHhhcCCHHH-HHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhH
Confidence 345566666666666666655432111 1122355666666777777776666555332 2334555566667
Q ss_pred HHHHHHHHHHH
Q 007695 553 LQDAQRVHGLM 563 (592)
Q Consensus 553 ~~~A~~l~~~m 563 (592)
|++|+.+...-
T Consensus 1042 ~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1042 WEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHHHhc
Confidence 77777665443
No 388
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=35.50 E-value=2.3e+02 Score=24.51 Aligned_cols=42 Identities=17% Similarity=0.202 Sum_probs=22.0
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 007695 348 SLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMR 389 (592)
Q Consensus 348 ~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~ 389 (592)
+-+..+...++.|++......+++|.+.+++..|.++|+-++
T Consensus 70 kglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 70 KGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred HHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 333444444455555555555555555555555555555544
No 389
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=34.34 E-value=2.7e+02 Score=23.05 Aligned_cols=84 Identities=14% Similarity=0.184 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHhhhCCCCCCHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007695 237 TQLYFKVAELVLSEESFQTNVRDYSKL--IDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEA 314 (592)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~p~~~~y~~L--i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~ 314 (592)
.+++..++++.... ++..-...| +..+...|+|++|.++.+.+ ..||...|-+|.. .+.|..+++..-
T Consensus 21 HqEA~tIAdwL~~~----~~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~r 90 (115)
T TIGR02508 21 HQEANTIADWLHLK----GESEEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESR 90 (115)
T ss_pred HHHHHHHHHHHhcC----CchHHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHH
Confidence 45555555555432 211122233 34566777888887776665 3577777765543 466666666666
Q ss_pred HHHHHhCCCCCCHHHHH
Q 007695 315 FESLRSHGFQPDKKVYN 331 (592)
Q Consensus 315 ~~~m~~~g~~pd~~t~~ 331 (592)
+..|...| .|....|.
T Consensus 91 l~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 91 LNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHHhCC-CHHHHHHH
Confidence 66776666 44444443
No 390
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=34.16 E-value=2.4e+02 Score=22.52 Aligned_cols=65 Identities=17% Similarity=0.083 Sum_probs=37.0
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHH
Q 007695 486 AEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDA 556 (592)
Q Consensus 486 A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A 556 (592)
+.+++..+.+.|+- +......+-.+-...|+.+.|.+++..+. +| +..|...+.++...|...-|
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhhh
Confidence 34555566665543 44444444433345677777777777776 43 23466677777766665444
No 391
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=33.20 E-value=4.8e+02 Score=25.62 Aligned_cols=150 Identities=15% Similarity=0.100 Sum_probs=70.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cC
Q 007695 270 ENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSK----AGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVN----AG 341 (592)
Q Consensus 270 ~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~----~g 341 (592)
.+++..+...+......+ +......+...|.. ..+...|.++|......| .......|...|.. ..
T Consensus 54 ~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g---~~~a~~~lg~~~~~G~gv~~ 127 (292)
T COG0790 54 PPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG---LAEALFNLGLMYANGRGVPL 127 (292)
T ss_pred cccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc---cHHHHHhHHHHHhcCCCccc
Confidence 344555555555554432 22333333333333 234566777777666554 22333334444433 23
Q ss_pred CchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC-------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----c
Q 007695 342 QPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG-------DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQ----A 410 (592)
Q Consensus 342 ~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g-------~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~----~ 410 (592)
+..+|..+|....+.|..+...+...+...|.... +...|...+...-..+ +......+...|.. .
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~ 204 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVP 204 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCC
Confidence 56667777777766664432222333333333321 1224555555555544 33333444433322 2
Q ss_pred CCHHHHHHHHHHHHHcCC
Q 007695 411 GDPDQARSNFDYMIRLGH 428 (592)
Q Consensus 411 g~~~~A~~lf~~m~~~g~ 428 (592)
.+..+|...|...-..|.
T Consensus 205 ~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 205 RDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred cCHHHHHHHHHHHHHCCC
Confidence 345566666665555443
No 392
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=33.18 E-value=2.3e+02 Score=22.66 Aligned_cols=34 Identities=15% Similarity=0.251 Sum_probs=15.2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCc
Q 007695 305 AGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQP 343 (592)
Q Consensus 305 ~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~ 343 (592)
.|+.+.|.+++..+. +| |+ .|...+.++...|+-
T Consensus 49 ~g~~~~ar~LL~~L~-rg--~~--aF~~Fl~aLreT~~~ 82 (88)
T cd08819 49 HGNESGARELLKRIV-QK--EG--WFSKFLQALRETEHH 82 (88)
T ss_pred cCcHHHHHHHHHHhc-cC--Cc--HHHHHHHHHHHcCch
Confidence 344555555555544 31 22 344444444444443
No 393
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=33.10 E-value=2.6e+02 Score=31.15 Aligned_cols=47 Identities=11% Similarity=0.139 Sum_probs=25.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCH
Q 007695 262 KLIDAHAKENCLEDAERILKKMNENG--IVPDIVTSTVLVHMYSKAGNL 308 (592)
Q Consensus 262 ~Li~~~~~~g~~~~A~~l~~~m~~~g--~~pd~~~~~~Li~~~~~~g~~ 308 (592)
+|+.+|...|++-.+.++++.+..+. -+.=...||..|+-..+.|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 56666666666666666666655431 112233455555555666654
No 394
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=33.05 E-value=4.9e+02 Score=25.69 Aligned_cols=201 Identities=12% Similarity=0.103 Sum_probs=110.0
Q ss_pred CCCCCHHHHHHHHHHH-HHcCCchHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhCCCHHHHHHHHHHHHHc---CCC
Q 007695 322 GFQPDKKVYNSMIMAY-VNAGQPKLGMSLVDMMITSGIERSEEI---YLALLRSFAQCGDVRGAGQITNIMRIE---EFQ 394 (592)
Q Consensus 322 g~~pd~~t~~~li~a~-~~~g~~~~A~~l~~~m~~~g~~p~~~t---~~~Ll~~~~~~g~~~~A~~~~~~m~~~---g~~ 394 (592)
+-.||+..=|..-.+- .+...+++|+.-|.+.++....-...- ...++..+.+.+++++....|.++... .+.
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 3467766554433322 234578888888888877432323333 345677788888888888888877532 111
Q ss_pred --CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C
Q 007695 395 --PTLESCTLLVEAYGQAGDPDQARSNFDYMIRL-GHKPDDR----CTASMIAAYGKKNLLDKALNLLLELEKD-----G 462 (592)
Q Consensus 395 --~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~-g~~pd~~----t~~~li~a~~~~g~~~~A~~l~~~m~~~-----g 462 (592)
-+..+.|+++..-..+.+.+-...+++.-... .-..+.. |-+-+-..|...|.+.+..++++++... |
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 23456677777666666666555555432221 0001111 2234555666667777777777776542 1
Q ss_pred C------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCCHHHHHHHHHH-----HHHcCCHHHHHH
Q 007695 463 F------EPGPATYTVLVDWLGRLQLINEAEQLLGKISELG-EAPPFKIQVSLCDM-----YARAGIEKKALQ 523 (592)
Q Consensus 463 ~------~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~~~~~Li~~-----~~~~g~~~~A~~ 523 (592)
- .--...|..=|+.|....+-.....+|.+..... --|.+.+.. .|+- ..+.|.+++|..
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHh
Confidence 0 0012456666777777777777777777654322 223333222 2332 345566666543
No 395
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=33.04 E-value=2.4e+02 Score=30.98 Aligned_cols=88 Identities=17% Similarity=0.010 Sum_probs=64.1
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 007695 478 GRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQ 557 (592)
Q Consensus 478 ~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~ 557 (592)
.-.|+...|...+.........-.......|.....+.|....|..++.+..... .-.+-++-.+.++|....+.+.|+
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHH
Confidence 4468888888888776544332234455666777778888888888887766653 334556778889999999999999
Q ss_pred HHHHHHHHC
Q 007695 558 RVHGLMEAQ 566 (592)
Q Consensus 558 ~l~~~m~~~ 566 (592)
+.|++..+.
T Consensus 697 ~~~~~a~~~ 705 (886)
T KOG4507|consen 697 EAFRQALKL 705 (886)
T ss_pred HHHHHHHhc
Confidence 999988765
No 396
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=32.81 E-value=4.6e+02 Score=26.17 Aligned_cols=114 Identities=11% Similarity=0.136 Sum_probs=0.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 007695 263 LIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQ 342 (592)
Q Consensus 263 Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~ 342 (592)
++..+.+..++....+.+..+.. ...-...+......|++..|+++..+..+ -...+..+-..---..+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~~------v~~~~~~l~~ll~~~dy~~Al~li~~~~~-----~l~~l~~~~c~~~L~~~ 172 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIKT------VQQTQSRLQELLEEGDYPGALDLIEECQQ-----LLEELKGYSCVRHLSSQ 172 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----HHHhcccchHHHHHhHH
Q ss_pred chHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 007695 343 PKLGMSLVDMMITSG-----IERSEEIYLALLRSFAQCGDVRGAGQITNI 387 (592)
Q Consensus 343 ~~~A~~l~~~m~~~g-----~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~ 387 (592)
+.+-.....++.+.. ..-|+..|..++.+|.-.|+...+..-+..
T Consensus 173 L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~~ 222 (291)
T PF10475_consen 173 LQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKLQM 222 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHH
No 397
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=32.71 E-value=4.8e+02 Score=25.52 Aligned_cols=163 Identities=13% Similarity=0.053 Sum_probs=0.0
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHHcCCH
Q 007695 408 GQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKD----GFEPGPATYTVLVDWLGRLQLI 483 (592)
Q Consensus 408 ~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~----g~~p~~~ty~~li~~~~~~g~~ 483 (592)
.+++++++|.+++..--. .+.+.|+...|-++..-|.+. +.+++......++..+...+.-
T Consensus 1 v~~kky~eAidLL~~Ga~---------------~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~ 65 (260)
T PF04190_consen 1 VKQKKYDEAIDLLYSGAL---------------ILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPE 65 (260)
T ss_dssp HHTT-HHHHHHHHHHHHH---------------HHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT
T ss_pred CccccHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCC
Q ss_pred H-HHHHHHHHHHhc-----CCCCCHHHHHHHHHHHHHcCCHHHHHHHH---------------HHHHHcCCCCCHHHH-H
Q 007695 484 N-EAEQLLGKISEL-----GEAPPFKIQVSLCDMYARAGIEKKALQAL---------------GFLEAKKEQMGPDDF-E 541 (592)
Q Consensus 484 ~-~A~~l~~~m~~~-----g~~p~~~~~~~Li~~~~~~g~~~~A~~~~---------------~~m~~~~~~~~~~~~-~ 541 (592)
+ .-.++.+.+.+. ...-++.....+...|.+.|++.+|...| ..-...+.+...+.| .
T Consensus 66 ~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~ 145 (260)
T PF04190_consen 66 EPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIA 145 (260)
T ss_dssp -TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHH
T ss_pred cchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHH
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHC-------------CCCCCH---HHHHHHHhhhhhc
Q 007695 542 RIINGLLAGGFLQDAQRVHGLMEAQ-------------GFAASE---RLKVALISSQTFN 585 (592)
Q Consensus 542 ~li~a~~~~g~~~~A~~l~~~m~~~-------------g~~pd~---~~~~~l~~~~~~~ 585 (592)
..+--|...++...|..+++...+. ++.++. .+...++.++..+
T Consensus 146 RaVL~yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~~ 205 (260)
T PF04190_consen 146 RAVLQYLCLGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCERD 205 (260)
T ss_dssp HHHHHHHHTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhcC
No 398
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=31.71 E-value=2.5e+02 Score=24.70 Aligned_cols=63 Identities=16% Similarity=0.173 Sum_probs=46.8
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 007695 244 AELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307 (592)
Q Consensus 244 ~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~ 307 (592)
+...+++.|++++..= ..++..+.+.++.-.|.++|+.+.+.+...+..|-..-++.+...|-
T Consensus 8 ~~~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 8 AIERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 3445567788777643 57788888888889999999999998877776665556666666664
No 399
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=31.27 E-value=2.8e+02 Score=30.96 Aligned_cols=75 Identities=17% Similarity=0.173 Sum_probs=55.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCch------HHHHHHHHHHHCCCCCCHHHHHHH
Q 007695 297 VLVHMYSKAGNLDRAKEAFESLRSH--GFQPDKKVYNSMIMAYVNAGQPK------LGMSLVDMMITSGIERSEEIYLAL 368 (592)
Q Consensus 297 ~Li~~~~~~g~~~~A~~~~~~m~~~--g~~pd~~t~~~li~a~~~~g~~~------~A~~l~~~m~~~g~~p~~~t~~~L 368 (592)
+|+.+|..+|++-.+.++++..... |-+.=...||..|+...+.|.++ .|.+++++.. +.-|.-||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 7899999999999999999998754 22333567888999999999764 4555555554 44477888877
Q ss_pred HHHHHh
Q 007695 369 LRSFAQ 374 (592)
Q Consensus 369 l~~~~~ 374 (592)
+++-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 766543
No 400
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=31.03 E-value=50 Score=28.67 Aligned_cols=21 Identities=38% Similarity=0.518 Sum_probs=10.4
Q ss_pred CCHHHHHHHHHHHHHCCCCCC
Q 007695 271 NCLEDAERILKKMNENGIVPD 291 (592)
Q Consensus 271 g~~~~A~~l~~~m~~~g~~pd 291 (592)
|.-.+|-.+|..|.++|-+||
T Consensus 109 gsk~DaY~VF~kML~~G~pPd 129 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPD 129 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCc
Confidence 333445555555555555544
No 401
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=30.70 E-value=1.1e+02 Score=30.61 Aligned_cols=28 Identities=21% Similarity=0.222 Sum_probs=13.1
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHCCCC
Q 007695 332 SMIMAYVNAGQPKLGMSLVDMMITSGIE 359 (592)
Q Consensus 332 ~li~a~~~~g~~~~A~~l~~~m~~~g~~ 359 (592)
..|....+.|++++|+.++++....|+.
T Consensus 262 ~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 262 QAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 4444444444444444444444444433
No 402
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=30.48 E-value=3.5e+02 Score=23.16 Aligned_cols=43 Identities=23% Similarity=0.366 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007695 275 DAERILKKMNENGIVPD-IVTSTVLVHMYSKAGNLDRAKEAFES 317 (592)
Q Consensus 275 ~A~~l~~~m~~~g~~pd-~~~~~~Li~~~~~~g~~~~A~~~~~~ 317 (592)
.+.++|..|..+|+--. +..|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 77777777777665433 44566677777777777777777764
No 403
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=30.15 E-value=5.6e+02 Score=25.50 Aligned_cols=78 Identities=13% Similarity=0.134 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 007695 345 LGMSLVDMMITSGI----ERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNF 420 (592)
Q Consensus 345 ~A~~l~~~m~~~g~----~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf 420 (592)
.|.+.|+.....+. ..++.....++....+.|+.+.-..+++.... ..+......++.+++...+.+...+++
T Consensus 148 ~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~~~~~l 224 (324)
T PF11838_consen 148 EARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPELLKRLL 224 (324)
T ss_dssp HHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHHHHHHH
T ss_pred HHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHHHHHHH
Confidence 44455555544211 23444444444445555554433333333332 224444455555555555555555555
Q ss_pred HHHHH
Q 007695 421 DYMIR 425 (592)
Q Consensus 421 ~~m~~ 425 (592)
+....
T Consensus 225 ~~~l~ 229 (324)
T PF11838_consen 225 DLLLS 229 (324)
T ss_dssp HHHHC
T ss_pred HHHcC
Confidence 55554
No 404
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=29.99 E-value=1.4e+03 Score=30.02 Aligned_cols=304 Identities=14% Similarity=0.007 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHH----HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007695 262 KLIDAHAKENCLEDAERILKK----MNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337 (592)
Q Consensus 262 ~Li~~~~~~g~~~~A~~l~~~----m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~ 337 (592)
.|..+-.+.+.+.+|...++. .++. .-...-|-.+...|+.-++++....+...-...+ ....-|.-.
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~------sl~~qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFADP------SLYQQILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCc------cHHHHHHHH
Q ss_pred HHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007695 338 VNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQAR 417 (592)
Q Consensus 338 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~ 417 (592)
...|++..|...|+.+.+.+ ++...+++-++..-...|.+..+....+......-+-....++.=+.+-.+.++++...
T Consensus 1460 e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e 1538 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLE 1538 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhh
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH--HHHHHHHHHHCCCCCCHHH------HHHHHHHHHHcCCHHHHHHH
Q 007695 418 SNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDK--ALNLLLELEKDGFEPGPAT------YTVLVDWLGRLQLINEAEQL 489 (592)
Q Consensus 418 ~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~--A~~l~~~m~~~g~~p~~~t------y~~li~~~~~~g~~~~A~~l 489 (592)
.... ...+..........++-..-+...+.. .++..++..-.....-... |..++....-..--.....+
T Consensus 1539 ~~l~--~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l 1616 (2382)
T KOG0890|consen 1539 SYLS--DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSIEEL 1616 (2382)
T ss_pred hhhh--cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 007695 490 LGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKK------EQMGPDDFERIINGLLAGGFLQDAQRVHGLM 563 (592)
Q Consensus 490 ~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~------~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m 563 (592)
.+--......-+..-|..-+..-....+..+-.-.+++..-.. ..--..+|-.........|+++.|...+-..
T Consensus 1617 ~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A 1696 (2382)
T KOG0890|consen 1617 KKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNA 1696 (2382)
T ss_pred hccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhh
Q ss_pred HHCCCCCCHHHHHH
Q 007695 564 EAQGFAASERLKVA 577 (592)
Q Consensus 564 ~~~g~~pd~~~~~~ 577 (592)
.+.+ .|..+...+
T Consensus 1697 ~e~r-~~~i~~E~A 1709 (2382)
T KOG0890|consen 1697 KESR-LPEIVLERA 1709 (2382)
T ss_pred hhcc-cchHHHHHH
No 405
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=29.66 E-value=2.7e+02 Score=25.28 Aligned_cols=59 Identities=8% Similarity=0.021 Sum_probs=26.8
Q ss_pred hhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 007695 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307 (592)
Q Consensus 248 ~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~ 307 (592)
++..|++.+..= ..++..+....+.-.|.++++.+.+.+...+..|-..-|..+...|-
T Consensus 17 L~~~GlR~T~qR-~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 17 CAQRNVRLTPQR-LEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred HHHcCCCCCHHH-HHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCC
Confidence 334444444433 23333333334444555555555555544444444444444444443
No 406
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=27.74 E-value=6.2e+02 Score=28.86 Aligned_cols=84 Identities=14% Similarity=0.001 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---C----------CCHHHHHHHHHHHHH
Q 007695 238 QLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGI---V----------PDIVTSTVLVHMYSK 304 (592)
Q Consensus 238 ~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~---~----------pd~~~~~~Li~~~~~ 304 (592)
......+...+...|+.-+......++... .|++..|+.+++++...|- . .+......|+.++.
T Consensus 181 eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~- 257 (709)
T PRK08691 181 QQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGII- 257 (709)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHH-
Confidence 344445555555666666666655555533 5778888887777654321 1 11222333343333
Q ss_pred cCCHHHHHHHHHHHHhCCCC
Q 007695 305 AGNLDRAKEAFESLRSHGFQ 324 (592)
Q Consensus 305 ~g~~~~A~~~~~~m~~~g~~ 324 (592)
.++...++.+++++...|+.
T Consensus 258 ~~d~~~al~~l~~L~~~G~d 277 (709)
T PRK08691 258 NQDGAALLAKAQEMAACAVG 277 (709)
T ss_pred cCCHHHHHHHHHHHHHhCCC
Confidence 36666777777777766643
No 407
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=27.57 E-value=7.3e+02 Score=25.96 Aligned_cols=90 Identities=14% Similarity=-0.007 Sum_probs=64.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHcCC-CCCH
Q 007695 471 TVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSL------------CDMYARAGIEKKALQALGFLEAKKE-QMGP 537 (592)
Q Consensus 471 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~L------------i~~~~~~g~~~~A~~~~~~m~~~~~-~~~~ 537 (592)
..|...+-..|++++|..++.+.. +.||.++ ++.|...+++-.|.-+-+.+..+-+ .|+.
T Consensus 135 k~L~~ike~~Gdi~~Aa~il~el~-------VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~ 207 (439)
T KOG1498|consen 135 KMLAKIKEEQGDIAEAADILCELQ-------VETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDV 207 (439)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhcc-------hhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccH
Confidence 345667788899999999988763 3333332 5677788899888888777765432 2332
Q ss_pred H-----HHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 007695 538 D-----DFERIINGLLAGGFLQDAQRVHGLMEAQG 567 (592)
Q Consensus 538 ~-----~~~~li~a~~~~g~~~~A~~l~~~m~~~g 567 (592)
. -|+.++....+.+.+=.+.+.|+..-..|
T Consensus 208 ~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~ 242 (439)
T KOG1498|consen 208 QELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTG 242 (439)
T ss_pred HHHHHHHHHHHHHhcccccchhhHHHHHHHHhccc
Confidence 2 37888888888899989999998887665
No 408
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=27.53 E-value=1.4e+02 Score=17.57 Aligned_cols=28 Identities=11% Similarity=-0.070 Sum_probs=14.3
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007695 516 GIEKKALQALGFLEAKKEQMGPDDFERII 544 (592)
Q Consensus 516 g~~~~A~~~~~~m~~~~~~~~~~~~~~li 544 (592)
|+.+.|..+|+++... .+-++..|...+
T Consensus 1 ~~~~~~r~i~e~~l~~-~~~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEK-FPKSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHH-CCCChHHHHHHH
Confidence 3455566666665554 223445555444
No 409
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=26.85 E-value=56 Score=28.40 Aligned_cols=29 Identities=10% Similarity=0.261 Sum_probs=14.4
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007695 516 GIEKKALQALGFLEAKKEQMGPDDFERIING 546 (592)
Q Consensus 516 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a 546 (592)
|.-..|.++|+.|.+.|.+|+ .|+.|+..
T Consensus 109 gsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 444445555555555554443 35555443
No 410
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=26.78 E-value=97 Score=22.84 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=18.5
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHH
Q 007695 542 RIINGLLAGGFLQDAQRVHGLMEA 565 (592)
Q Consensus 542 ~li~a~~~~g~~~~A~~l~~~m~~ 565 (592)
.+|.+|.+.|++++|.++.+++..
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 468888899999999888887754
No 411
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=26.72 E-value=5.8e+02 Score=24.55 Aligned_cols=163 Identities=16% Similarity=0.075 Sum_probs=0.0
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--
Q 007695 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF-AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQ-- 409 (592)
Q Consensus 333 li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~-~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~-- 409 (592)
++..+-+.++++++...++++...+...+..--+.|-.+| ...|....+++++..+....-.-.......++.-|.+
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk~ki 86 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIKDYKKKI 86 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHHHHHHHH
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-----------------HHHHHHHHHHHHHC---CCCCCHHH
Q 007695 410 AGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNL-----------------LDKALNLLLELEKD---GFEPGPAT 469 (592)
Q Consensus 410 ~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~-----------------~~~A~~l~~~m~~~---g~~p~~~t 469 (592)
...+..--.-+-.+....+.|...+--+.+..+-..|| .+.|...|+..... .++|...+
T Consensus 87 e~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p~ 166 (236)
T PF00244_consen 87 EDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHPL 166 (236)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCcH
Q ss_pred HHHHHH-----HHHHcCCHHHHHHHHHHHHh
Q 007695 470 YTVLVD-----WLGRLQLINEAEQLLGKISE 495 (592)
Q Consensus 470 y~~li~-----~~~~~g~~~~A~~l~~~m~~ 495 (592)
+..|+- .|-..|+.++|.++-+...+
T Consensus 167 rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 167 RLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
No 412
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=26.08 E-value=5.9e+02 Score=24.41 Aligned_cols=65 Identities=20% Similarity=0.290 Sum_probs=33.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHH--HHHHHHHHHcCCHHHHHHHHHHHH
Q 007695 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVP---DIVTS--TVLVHMYSKAGNLDRAKEAFESLR 319 (592)
Q Consensus 253 ~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p---d~~~~--~~Li~~~~~~g~~~~A~~~~~~m~ 319 (592)
+.+....+|.||--|.-...+.+|...|.. ..|+.| |..++ ..-|......|+++.|.+..+.+-
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~ 91 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLN 91 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhC
Confidence 344444555555555544445555555532 333333 22222 234555566677777766666554
No 413
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=25.71 E-value=3.5e+02 Score=21.58 Aligned_cols=53 Identities=9% Similarity=0.133 Sum_probs=0.0
Q ss_pred HHHcCCHHHH----HHHHHHHHhCCCCCC-----HHHHHHHHHHHHHcCCchHHHHHHHHHHH
Q 007695 302 YSKAGNLDRA----KEAFESLRSHGFQPD-----KKVYNSMIMAYVNAGQPKLGMSLVDMMIT 355 (592)
Q Consensus 302 ~~~~g~~~~A----~~~~~~m~~~g~~pd-----~~t~~~li~a~~~~g~~~~A~~l~~~m~~ 355 (592)
..+.|++..| .+.|+.....+ .+. ....-.+...+...|++++|...+++.+.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~-~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSN-NSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcc-cchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
No 414
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=25.63 E-value=9.1e+02 Score=27.56 Aligned_cols=45 Identities=13% Similarity=0.124 Sum_probs=27.6
Q ss_pred HHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007695 449 DKALNLLLELE-KDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495 (592)
Q Consensus 449 ~~A~~l~~~m~-~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 495 (592)
++....+.... +.|+..+......++... .|++..+..+++++..
T Consensus 181 eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia 226 (709)
T PRK08691 181 QQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIA 226 (709)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence 44444444443 347777777666666543 5778888887776654
No 415
>PF05542 DUF760: Protein of unknown function (DUF760); InterPro: IPR008479 This entry contains uncharacterised proteins.
Probab=25.51 E-value=73 Score=25.33 Aligned_cols=32 Identities=16% Similarity=0.190 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCchHHHHHhhh
Q 007695 35 EDLWRTVWEVSNLVLEDMEKARKKEKMKGFLQSDKVKEMSRF 76 (592)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (592)
++||.-|=+++...+..+.+ .+|+||+|+.+-
T Consensus 1 n~L~~yi~~l~pe~~~~l~~----------~~s~ev~e~m~~ 32 (86)
T PF05542_consen 1 NDLLQYIQSLKPERIQQLSE----------PASPEVLEAMKQ 32 (86)
T ss_pred ChHHHHHHHCCHHHHHHhhc----------cCCHHHHHHHHH
Confidence 36777777776655555444 788999888764
No 416
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=25.49 E-value=4.3e+02 Score=22.58 Aligned_cols=42 Identities=12% Similarity=0.206 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHH
Q 007695 450 KALNLLLELEKDGFEPG-PATYTVLVDWLGRLQLINEAEQLLG 491 (592)
Q Consensus 450 ~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~ 491 (592)
.+..+|..|...|+-.. +..|..-...+...|++.+|..+|+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34444444444333222 2333333333444444444444443
No 417
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=24.99 E-value=3.2e+02 Score=26.47 Aligned_cols=58 Identities=16% Similarity=0.109 Sum_probs=31.8
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHc----C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007695 366 LALLRSFAQCGDVRGAGQITNIMRIE----E-FQPTLESCTLLVEAYGQAGDPDQARSNFDYM 423 (592)
Q Consensus 366 ~~Ll~~~~~~g~~~~A~~~~~~m~~~----g-~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m 423 (592)
..+...|.+.|++++|.++|+.+... | ..+...+...+..++.+.|+.+....+.-++
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34555566666666666666665321 1 1223445555666666666666665554444
No 418
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.84 E-value=9.1e+02 Score=26.16 Aligned_cols=32 Identities=9% Similarity=0.293 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHCCCCC
Q 007695 329 VYNSMIMAYVNAGQPKLGMSLVDMMITSGIER 360 (592)
Q Consensus 329 t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p 360 (592)
.+..++.+....+....|+.++.++.+.|..|
T Consensus 250 ~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~ 281 (484)
T PRK14956 250 FLTSFIKSLIDPDNHSKSLEILESLYQEGQDI 281 (484)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCH
Confidence 33344443333333345555555555555443
No 419
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=24.69 E-value=8.7e+02 Score=25.91 Aligned_cols=62 Identities=11% Similarity=-0.105 Sum_probs=43.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 007695 505 QVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQG 567 (592)
Q Consensus 505 ~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~g 567 (592)
...|+.-|...|++.+|.+.++++.-- .......+.+++.+.-+.|+....+.+++..-..|
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmP-fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMP-FFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCC-cchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 346788899999999999988876332 11123457788888888888777777776554443
No 420
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=24.52 E-value=5.9e+02 Score=23.86 Aligned_cols=67 Identities=6% Similarity=0.187 Sum_probs=31.7
Q ss_pred CCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHH
Q 007695 252 SFQTNVRDYSKLIDAHAK----ENCLEDAERILKKMNENGIVPDIV----TSTVLVHMYSKAGNLDRAKEAFESL 318 (592)
Q Consensus 252 ~~~p~~~~y~~Li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~----~~~~Li~~~~~~g~~~~A~~~~~~m 318 (592)
|..+++..++.++..+.+ .+.++-+..+=.+....++.++-. ....=+..|-+.||+.+.-.+|-..
T Consensus 3 Gm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv 77 (233)
T PF14669_consen 3 GMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINV 77 (233)
T ss_pred cccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhH
Confidence 444555555555554443 234444444444444444444322 2223334555556666555555443
No 421
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=24.48 E-value=1e+03 Score=26.53 Aligned_cols=65 Identities=18% Similarity=0.178 Sum_probs=28.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHC
Q 007695 396 TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYG--KKNLLDKALNLLLELEKD 461 (592)
Q Consensus 396 ~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~--~~g~~~~A~~l~~~m~~~ 461 (592)
|...-...|.+++..|... +...+..........+...-...|.++. .....+.+..++-.+..+
T Consensus 503 ~~~~~~~~LkaLgN~g~~~-~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v~~~l~~I~~n 569 (618)
T PF01347_consen 503 DEEEKIVYLKALGNLGHPE-SIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKVREILLPIFMN 569 (618)
T ss_dssp -HHHHHHHHHHHHHHT-GG-GHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHhhccCCch-hhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHHHHHHHHHhcC
Confidence 4444455566666666653 3333333333221223333334455554 344455666555555443
No 422
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.48 E-value=9.5e+02 Score=26.23 Aligned_cols=44 Identities=18% Similarity=0.160 Sum_probs=25.2
Q ss_pred HHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 007695 241 FKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNEN 286 (592)
Q Consensus 241 ~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~ 286 (592)
...+.......|+..+......++... .|++..|..+++++...
T Consensus 184 ~~~l~~il~~egi~~~~~al~~ia~~s--~GslR~al~lLdq~ia~ 227 (509)
T PRK14958 184 AAHCQHLLKEENVEFENAALDLLARAA--NGSVRDALSLLDQSIAY 227 (509)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHhc
Confidence 344444555556666655555554432 57777777777765543
No 423
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=24.36 E-value=7.5e+02 Score=25.01 Aligned_cols=57 Identities=16% Similarity=0.259 Sum_probs=37.2
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007695 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYV 338 (592)
Q Consensus 277 ~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~ 338 (592)
.++++.|...++.|.-..+.-+.-.+.+.=.+.+.+.+++.+... ..-|..|+..||
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCc 319 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICC 319 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHH
Confidence 456677777777777777766666666677777777777777652 223555555554
No 424
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=24.36 E-value=5.9e+02 Score=23.84 Aligned_cols=58 Identities=17% Similarity=0.030 Sum_probs=37.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--------------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 007695 505 QVSLCDMYARAGIEKKALQALGFLEAKKEQ--------------MGPDDFERIINGLLAGGFLQDAQRVHGL 562 (592)
Q Consensus 505 ~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~--------------~~~~~~~~li~a~~~~g~~~~A~~l~~~ 562 (592)
-.+++..|-+..++.++.++++.|.+..+. +.-..-|.....+.+.|..+.|+.++++
T Consensus 135 GiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 135 GISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 345566666777777777777766553221 1112356667778888999888888773
No 425
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.28 E-value=9.9e+02 Score=26.84 Aligned_cols=43 Identities=14% Similarity=0.205 Sum_probs=23.4
Q ss_pred HHHHHHHHH-HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007695 450 KALNLLLEL-EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494 (592)
Q Consensus 450 ~A~~l~~~m-~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~ 494 (592)
+....+... .+.|+..+......++. ...|++..+..++++..
T Consensus 187 ei~~~L~~i~~~egi~ie~~AL~~La~--~s~GslR~al~lLdq~i 230 (618)
T PRK14951 187 TVLEHLTQVLAAENVPAEPQALRLLAR--AARGSMRDALSLTDQAI 230 (618)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHH
Confidence 333444333 34466666666655554 23467777777665544
No 426
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=24.25 E-value=1.1e+03 Score=26.94 Aligned_cols=268 Identities=13% Similarity=0.086 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHHc------CCHH
Q 007695 237 TQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMN-ENGIVPDIVTSTVLVHMYSKA------GNLD 309 (592)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~-~~g~~pd~~~~~~Li~~~~~~------g~~~ 309 (592)
....+..++.+.....++-....--.+-..|.-.|++++|+.+--... ...+.++...+.+++.-|... ..++
T Consensus 39 Isd~l~~IE~lyed~~F~er~~AaL~~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~id~yi~~~~~~~~ 118 (929)
T KOG2062|consen 39 ISDSLPKIESLYEDETFPERQLAALLASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCIDMYIETASETYK 118 (929)
T ss_pred hhhhHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHHHHHHHHHHHHhc
Q ss_pred ----------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHH
Q 007695 310 ----------RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379 (592)
Q Consensus 310 ----------~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~ 379 (592)
+-..++++|..+ ..+..-|..+|.......+++.-.+. .|......-+......++..... +.+
T Consensus 119 ~~~~~~~iD~rL~~iv~rmi~k--cl~d~e~~~aiGia~E~~rld~ie~A--il~~d~~~~~~~yll~l~~s~v~--~~e 192 (929)
T KOG2062|consen 119 NPEQKSPIDQRLRDIVERMIQK--CLDDNEYKQAIGIAFETRRLDIIEEA--ILKSDSVIGNLTYLLELLISLVN--NRE 192 (929)
T ss_pred CccccCCCCHHHHHHHHHHHHH--hhhhhHHHHHHhHHhhhhhHHHHHHH--hccccccchHHHHHHHHHHHHHh--hHH
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007695 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELE 459 (592)
Q Consensus 380 ~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~ 459 (592)
--.++++.+...-.+....-|..+..+|.-..+.+.+.++++++.+ -|......-|.-.....-..+-+....+-.
T Consensus 193 fR~~vlr~lv~~y~~~~~PDy~~vc~c~v~Ldd~~~va~ll~kL~~----e~~~llayQIAFDL~esasQefL~~v~~~l 268 (929)
T KOG2062|consen 193 FRNKVLRLLVKTYLKLPSPDYFSVCQCYVFLDDAEAVADLLEKLVK----EDDLLLAYQIAFDLYESASQEFLDSVLDRL 268 (929)
T ss_pred HHHHHHHHHHHHHccCCCCCeeeeeeeeEEcCCHHHHHHHHHHHHh----cchhhhHHHHHHHHhhccCHHHHHHHHHHc
Q ss_pred H-------------CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC
Q 007695 460 K-------------DGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516 (592)
Q Consensus 460 ~-------------~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g 516 (592)
. .++-....+.-....-+.+.++.+ ..+++...+.--..-..+...+.+++...|
T Consensus 269 ~~d~~~de~p~~kii~ILSGe~tik~~l~FL~~~N~tD--~~iL~~iK~s~r~sv~H~A~~iAN~fMh~G 336 (929)
T KOG2062|consen 269 PADDARDEKPMEKIISILSGEETIKLYLQFLLRHNNTD--LLILEEIKESVRNSVCHTATLIANAFMHAG 336 (929)
T ss_pred ccccccccChHHHHHHHhcCchHHHHHHHHHHHcCCch--HHHHHHHHHHHHHhhhhHHHHHHHHHHhcC
No 427
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=24.18 E-value=6.7e+02 Score=24.41 Aligned_cols=119 Identities=13% Similarity=-0.021 Sum_probs=70.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHcCCH
Q 007695 406 AYGQAGDPDQARSNFDYMIRLGHKPDDRC-TASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYT-VLVDWLGRLQLI 483 (592)
Q Consensus 406 ~~~~~g~~~~A~~lf~~m~~~g~~pd~~t-~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~-~li~~~~~~g~~ 483 (592)
-|.....++.|...|.+... +.|+..+ |+.-+-+|.+..+++.+..--.+.++ +.||...-. .+-.++.....+
T Consensus 19 k~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred cccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccc
Confidence 35555677888886666555 4566644 45566677777888777655444444 556654333 344455666778
Q ss_pred HHHHHHHHHHHh----cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007695 484 NEAEQLLGKISE----LGEAPPFKIQVSLCDMYARAGIEKKALQALGFL 528 (592)
Q Consensus 484 ~~A~~l~~~m~~----~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m 528 (592)
++|...+++... ..+.+-..+...|..+--+.=...+..++.+..
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 888888887642 234444456666665544444445555555544
No 428
>PRK13342 recombination factor protein RarA; Reviewed
Probab=23.91 E-value=8.6e+02 Score=25.56 Aligned_cols=34 Identities=26% Similarity=0.267 Sum_probs=20.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 007695 410 AGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYG 443 (592)
Q Consensus 410 ~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~ 443 (592)
.++.+.|...+..|...|..|....-..++.++-
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~e 276 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIARRLVIIASE 276 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3566777777777776666665554444444443
No 429
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=23.81 E-value=1.1e+03 Score=27.31 Aligned_cols=42 Identities=19% Similarity=0.191 Sum_probs=21.1
Q ss_pred HHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007695 242 KVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNE 285 (592)
Q Consensus 242 ~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~ 285 (592)
+.++......++.-+......+.. ...|++..|+.++++...
T Consensus 185 ~~L~~Il~~EgI~id~eAL~lIA~--~A~GsmRdALsLLdQAia 226 (830)
T PRK07003 185 SHLERILGEERIAFEPQALRLLAR--AAQGSMRDALSLTDQAIA 226 (830)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHH
Confidence 333344444455545444433333 335677777777666443
No 430
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.75 E-value=9.6e+02 Score=26.16 Aligned_cols=45 Identities=22% Similarity=0.336 Sum_probs=22.3
Q ss_pred HHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007695 449 DKALNLLLEL-EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495 (592)
Q Consensus 449 ~~A~~l~~~m-~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 495 (592)
++...++... .+.|+..+......++.. ..|++..+...++.+..
T Consensus 178 ~el~~~L~~i~~~egi~i~~~Al~~ia~~--s~GdlR~aln~Lekl~~ 223 (504)
T PRK14963 178 EEIAGKLRRLLEAEGREAEPEALQLVARL--ADGAMRDAESLLERLLA 223 (504)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHh
Confidence 3334444443 234665555555544433 24666666666665543
No 431
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=23.74 E-value=9.2e+02 Score=26.43 Aligned_cols=24 Identities=17% Similarity=0.113 Sum_probs=16.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 007695 401 TLLVEAYGQAGDPDQARSNFDYMI 424 (592)
Q Consensus 401 ~~Li~~~~~~g~~~~A~~lf~~m~ 424 (592)
..++.-|.+.+++++|..++..|.
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCC
Confidence 345666777777777777777664
No 432
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=23.72 E-value=7.2e+02 Score=24.58 Aligned_cols=185 Identities=12% Similarity=0.119 Sum_probs=105.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHh---CCC--CCCHHHHHHHHHHHHHcC
Q 007695 270 ENCLEDAERILKKMNENGIVPDI---VTSTVLVHMYSKAGNLDRAKEAFESLRS---HGF--QPDKKVYNSMIMAYVNAG 341 (592)
Q Consensus 270 ~g~~~~A~~l~~~m~~~g~~pd~---~~~~~Li~~~~~~g~~~~A~~~~~~m~~---~g~--~pd~~t~~~li~a~~~~g 341 (592)
....++|+.-|++..+....... ...-.+|..+.+.+++++....|.+|+. ..+ .-+..+.|+++.-.....
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 34566777777776654222122 2234466677777777777777776642 111 123445666666666555
Q ss_pred CchHHHHHHHHHHH----C-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----CC------CCCHHHHHHHHH
Q 007695 342 QPKLGMSLVDMMIT----S-GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE-----EF------QPTLESCTLLVE 405 (592)
Q Consensus 342 ~~~~A~~l~~~m~~----~-g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~-----g~------~~~~~~~~~Li~ 405 (592)
+.+...++|+.-++ . +-..--.|-+-|...|...+.+....++++++.+. |- ..-...|..=|.
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 55555554443322 1 00111123345667777777788888888777643 10 112456777888
Q ss_pred HHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHH-----HhcCCHHHHHHHH
Q 007695 406 AYGQAGDPDQARSNFDYMIRL-GHKPDDRCTASMIAAY-----GKKNLLDKALNLL 455 (592)
Q Consensus 406 ~~~~~g~~~~A~~lf~~m~~~-g~~pd~~t~~~li~a~-----~~~g~~~~A~~l~ 455 (592)
+|...++-.+...++++.... .-.|...... +|.-| .+.|.+++|..-|
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDF 254 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDF 254 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHH
Confidence 888888888888888877652 3335544443 34444 3557787775433
No 433
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=23.67 E-value=4.1e+02 Score=24.04 Aligned_cols=60 Identities=10% Similarity=0.008 Sum_probs=30.4
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCc
Q 007695 283 MNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQP 343 (592)
Q Consensus 283 m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~ 343 (592)
+...|+.++..-. .++..+......-.|.++++.+.+.+...+..|..--|..+...|-+
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 3444555444322 34444444444555666666666655455555555555555555543
No 434
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=23.19 E-value=3e+02 Score=28.57 Aligned_cols=69 Identities=28% Similarity=0.459 Sum_probs=50.4
Q ss_pred HHhHHHHHHHHHHHHHHHhhcccCch--HHHHHhhhhhhccchhhhhHHHhhhhhHhhhhhhHHhhhHHHHHHHHHH
Q 007695 43 EVSNLVLEDMEKARKKEKMKGFLQSD--KVKEMSRFAGEIGIRGDMLRELRFKWAREEMEESEFYEGLERLRKEANA 117 (592)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (592)
-|++. +|++||+-.- |-+--|-+ -||||.|.-|-.|.| |+.+--.|.|---+-....++|..+|.+++-
T Consensus 288 k~~s~-LEelRrevss--Ltarw~qEega~qEaLrlLgglggR---ldgflgqWERaQ~eq~q~ar~lqeLR~~~de 358 (558)
T PF15358_consen 288 KVSSG-LEELRREVSS--LTARWHQEEGAVQEALRLLGGLGGR---LDGFLGQWERAQREQAQTARGLQELRGRADE 358 (558)
T ss_pred ccCcc-HHHHHHHHHH--HhhHHHHHHhHHHHHHHHHhhcCch---hhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 34433 4777776542 22222333 489999999999988 5667778999999999999999999987753
No 435
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.62 E-value=1e+03 Score=25.97 Aligned_cols=34 Identities=18% Similarity=0.121 Sum_probs=20.0
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007695 460 KDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495 (592)
Q Consensus 460 ~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 495 (592)
+.|+..+......++... .|++..|..+++++..
T Consensus 193 ~egi~~~~~al~~ia~~s--~GslR~al~lLdq~ia 226 (509)
T PRK14958 193 EENVEFENAALDLLARAA--NGSVRDALSLLDQSIA 226 (509)
T ss_pred HcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHh
Confidence 446666665555554432 4777777777765543
No 436
>PHA03100 ankyrin repeat protein; Provisional
Probab=22.32 E-value=6.8e+02 Score=26.64 Aligned_cols=19 Identities=0% Similarity=-0.167 Sum_probs=12.6
Q ss_pred ccCCchhHHHHHHhhcCCC
Q 007695 203 KEEDPSPLLAEWKELLQPS 221 (592)
Q Consensus 203 ~~g~~~~A~~~~~~~~~p~ 221 (592)
+.|+.+-...+++.+..|+
T Consensus 44 ~~~~~~ivk~Ll~~g~~~~ 62 (480)
T PHA03100 44 EARNIDVVKILLDNGADIN 62 (480)
T ss_pred ccCCHHHHHHHHHcCCCCC
Confidence 6677777767777765544
No 437
>KOG1112 consensus Ribonucleotide reductase, alpha subunit [Nucleotide transport and metabolism]
Probab=22.30 E-value=71 Score=33.88 Aligned_cols=20 Identities=40% Similarity=0.833 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhHHHHHHHHH
Q 007695 35 EDLWRTVWEVSNLVLEDMEK 54 (592)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~ 54 (592)
.||.+||||+|.--.=+|--
T Consensus 677 k~lYkTvWEIsqktvi~mAA 696 (796)
T KOG1112|consen 677 KELYKTVWEISQKTVIDMAA 696 (796)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 47999999999654444433
No 438
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=22.28 E-value=8.4e+02 Score=24.86 Aligned_cols=165 Identities=12% Similarity=0.064 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 007695 225 WINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSK 304 (592)
Q Consensus 225 ~~~lL~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~ 304 (592)
|..+-.+....+.....+.+...+. +.|.-.+ ..++-+--..--+.+|+++|++..+. -..+|+ +
T Consensus 188 ~eIMQ~AWRERnp~~RI~~A~~ALe---IN~eCA~-AyvLLAEEEa~Ti~~AE~l~k~ALka----~e~~yr-------~ 252 (556)
T KOG3807|consen 188 DEIMQKAWRERNPPARIKAAYQALE---INNECAT-AYVLLAEEEATTIVDAERLFKQALKA----GETIYR-------Q 252 (556)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHh---cCchhhh-HHHhhhhhhhhhHHHHHHHHHHHHHH----HHHHHh-------h
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 007695 305 AGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMIT-SGIERSEEIYLALLRSFAQCGDVRGAGQ 383 (592)
Q Consensus 305 ~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~Ll~~~~~~g~~~~A~~ 383 (592)
+.+...--...+.+.+++...-+..-.-+..+..+.|+..+|.+.++++.+ ..+..-......|+.+|....-+.++..
T Consensus 253 sqq~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqa 332 (556)
T KOG3807|consen 253 SQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQA 332 (556)
T ss_pred HHHHhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHcCCCCC-HHHHHHHH
Q 007695 384 ITNIMRIEEFQPT-LESCTLLV 404 (592)
Q Consensus 384 ~~~~m~~~g~~~~-~~~~~~Li 404 (592)
++.+.-+...+.+ ...|++-+
T Consensus 333 vLakYDdislPkSA~icYTaAL 354 (556)
T KOG3807|consen 333 VLAKYDDISLPKSAAICYTAAL 354 (556)
T ss_pred HHHhhccccCcchHHHHHHHHH
No 439
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=21.93 E-value=1e+03 Score=25.77 Aligned_cols=98 Identities=7% Similarity=-0.052 Sum_probs=53.2
Q ss_pred CCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhc-CCCCCHHHH
Q 007695 430 PDDRCT-ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR--LQLINEAEQLLGKISEL-GEAPPFKIQ 505 (592)
Q Consensus 430 pd~~t~-~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~--~g~~~~A~~l~~~m~~~-g~~p~~~~~ 505 (592)
|+..|+ +.++.-+-+.|-..+|...|..+... .+|+...|.-+|+.-.. .-++..+..+|+.+... | .++..|
T Consensus 457 ~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~lw 533 (568)
T KOG2396|consen 457 ADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDLW 533 (568)
T ss_pred CceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHHH
Confidence 444443 23455555566666666666666543 23455555555542211 11255666666666543 4 366667
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 007695 506 VSLCDMYARAGIEKKALQALGFLEA 530 (592)
Q Consensus 506 ~~Li~~~~~~g~~~~A~~~~~~m~~ 530 (592)
...+..=...|..+.+-.++.+...
T Consensus 534 ~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 534 MDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHhhccCCCcccccHHHHHHHH
Confidence 6666666667777766666554443
No 440
>PRK13342 recombination factor protein RarA; Reviewed
Probab=21.46 E-value=9.6e+02 Score=25.21 Aligned_cols=104 Identities=19% Similarity=0.100 Sum_probs=56.5
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 007695 359 ERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438 (592)
Q Consensus 359 ~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~l 438 (592)
..+......++..+ .|+...+..+++.....+-..+ .+....++...... ...+...+..+
T Consensus 173 ~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It----------------~~~v~~~~~~~~~~-~d~~~~~~~~~ 233 (413)
T PRK13342 173 ELDDEALDALARLA--NGDARRALNLLELAALGVDSIT----------------LELLEEALQKRAAR-YDKDGDEHYDL 233 (413)
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCC----------------HHHHHHHHhhhhhc-cCCCccHHHHH
Confidence 45555555555543 6788888777776654311111 22222223222111 11122233345
Q ss_pred HHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 007695 439 IAAYGK---KNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQ 481 (592)
Q Consensus 439 i~a~~~---~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g 481 (592)
++++.+ .++.+.|+.++..|.+.|..|....-..++.++...|
T Consensus 234 isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 234 ISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 555554 4789999999999999887777555555554544443
No 441
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=21.06 E-value=1.8e+02 Score=31.05 Aligned_cols=105 Identities=11% Similarity=0.040 Sum_probs=60.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC
Q 007695 299 VHMYSKAGNLDRAKEAFESLRSHGFQPDKKVY-NSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGD 377 (592)
Q Consensus 299 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~-~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~ 377 (592)
++-+.+.++++.|..++.+..+. .||-..| ..-..++.+.+++..|+.=+...++.... ....|..-..+|.+.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~-~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPT-YIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcCch-hhheeeeccHHHHhHHH
Confidence 34455667788888888887765 5544433 33346777777887777666666654311 12233333344445555
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 007695 378 VRGAGQITNIMRIEEFQPTLESCTLLVEAYG 408 (592)
Q Consensus 378 ~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~ 408 (592)
+.+|+..|+..... .|+..-....+.-|-
T Consensus 88 ~~~A~~~l~~~~~l--~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 88 FKKALLDLEKVKKL--APNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHHHHhhhc--CcCcHHHHHHHHHHH
Confidence 66666666655543 566665555555443
No 442
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=20.94 E-value=2.1e+02 Score=21.46 Aligned_cols=42 Identities=21% Similarity=0.191 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007695 259 DYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHM 301 (592)
Q Consensus 259 ~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~ 301 (592)
.++.++..+++..-++++...+.+..++|. .+..+|.--++.
T Consensus 10 l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~ 51 (65)
T PF09454_consen 10 LSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRS 51 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHH
Confidence 444555555554445555555555554443 233344333333
No 443
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=20.90 E-value=7.8e+02 Score=26.91 Aligned_cols=49 Identities=22% Similarity=0.212 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 007695 237 TQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENG 287 (592)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g 287 (592)
.+.....+..+....++.-+...+..+.. ...|...+|+.+++++...|
T Consensus 180 ~~~I~~~L~~i~~~E~I~~e~~aL~~ia~--~a~Gs~RDalslLDq~i~~~ 228 (515)
T COG2812 180 LEEIAKHLAAILDKEGINIEEDALSLIAR--AAEGSLRDALSLLDQAIAFG 228 (515)
T ss_pred HHHHHHHHHHHHHhcCCccCHHHHHHHHH--HcCCChhhHHHHHHHHHHcc
Confidence 44555566666666777777666554433 45677777888888777654
No 444
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=20.79 E-value=8.8e+02 Score=24.51 Aligned_cols=170 Identities=14% Similarity=0.027 Sum_probs=76.5
Q ss_pred CHHHHHHHHH-HHHHcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHH
Q 007695 291 DIVTSTVLVH-MYSKAGN-LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLAL 368 (592)
Q Consensus 291 d~~~~~~Li~-~~~~~g~-~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~L 368 (592)
+...++.|.+ .+.+.|- ..-|.++|...... ...+.+++.+.+.+.-+.-.++ ++|+..+-...
T Consensus 164 ~~tvl~~L~~d~LVkeGi~l~F~~~lFk~~~~E------k~i~~lis~Lrkg~md~rLmef--------fPpnkrs~E~F 229 (412)
T KOG2297|consen 164 PATVLQSLLNDNLVKEGIALSFAVKLFKEWLVE------KDINDLISSLRKGKMDDRLMEF--------FPPNKRSVEHF 229 (412)
T ss_pred CHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHhh------ccHHHHHHHHHhcChHhHHHHh--------cCCcchhHHHH
Confidence 4444554443 3333332 23466677766632 2346666666554443333332 46666665555
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHcCCCCCHH----HHHHHHHHHH
Q 007695 369 LRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNF-DYMIRLGHKPDDR----CTASMIAAYG 443 (592)
Q Consensus 369 l~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf-~~m~~~g~~pd~~----t~~~li~a~~ 443 (592)
...+...|--+-..-.-.++... .-...-..|.+-..+...+++..... ++|+..++ |+.. .|+.++++--
T Consensus 230 ak~Ft~agL~elvey~~~q~~~~---a~kElq~~L~~q~s~e~p~~evi~~VKee~k~~nl-Pe~eVi~ivWs~iMsave 305 (412)
T KOG2297|consen 230 AKYFTDAGLKELVEYHRNQQSEG---ARKELQKELQEQVSEEDPVKEVILYVKEEMKRNNL-PETEVIGIVWSGIMSAVE 305 (412)
T ss_pred HHHHhHhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCC-CCceEEeeeHhhhhHHHh
Confidence 55554444322221111111000 00011122333333344455554444 44555444 5543 4666665533
Q ss_pred hcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007695 444 KKNLL-DKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487 (592)
Q Consensus 444 ~~g~~-~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~ 487 (592)
-+.+- --|.+.+++ ..+|..|+.++|..|+.+-.+
T Consensus 306 WnKkeelva~qalrh---------lK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 306 WNKKEELVAEQALRH---------LKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred hchHHHHHHHHHHHH---------HHhhhHHHHHHhcCChHHHHH
Confidence 22111 112333333 246778888888888866543
No 445
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=20.52 E-value=1.2e+03 Score=25.93 Aligned_cols=47 Identities=17% Similarity=0.114 Sum_probs=19.9
Q ss_pred ccCCchhHHHHHHhhcCC--CHhhHHHHHHHHHhhCHHHHHHHHHHHhh
Q 007695 203 KEEDPSPLLAEWKELLQP--SRIDWINLLDRLREQNTQLYFKVAELVLS 249 (592)
Q Consensus 203 ~~g~~~~A~~~~~~~~~p--~~~t~~~lL~~~~~~~~~~~~~~~~~~~~ 249 (592)
|.=+.++-..+|++.... ....++.++.++...|...+..++...+.
T Consensus 357 r~l~~~~L~~l~~~~~~~~~~~~~r~~~lDal~~aGT~~av~~i~~~I~ 405 (618)
T PF01347_consen 357 RTLSYEDLEELYKQLKSKSKKEQARKIFLDALPQAGTNPAVKFIKDLIK 405 (618)
T ss_dssp TTS-HHHHHHHHHHHTTS---HHHHHHHHHHHHHH-SHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 333444444444444333 34445555555544444444444444443
No 446
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=20.41 E-value=82 Score=30.27 Aligned_cols=25 Identities=20% Similarity=0.302 Sum_probs=19.7
Q ss_pred HHHHHHhhcccCchHHHHHhhhhhh
Q 007695 55 ARKKEKMKGFLQSDKVKEMSRFAGE 79 (592)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (592)
+..++-+..|.++++||+|+.|-..
T Consensus 229 e~~~~i~~~~~~~~~v~~~~dFi~~ 253 (260)
T COG1043 229 EALEEIAEEYADNPEVKEFIDFIAS 253 (260)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHhh
Confidence 3445557889999999999999653
No 447
>PRK10941 hypothetical protein; Provisional
Probab=20.39 E-value=8.4e+02 Score=24.08 Aligned_cols=58 Identities=12% Similarity=0.022 Sum_probs=32.1
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007695 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR 425 (592)
Q Consensus 367 ~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~ 425 (592)
.+-.+|.+.++++.|.++.+.+.... +.+..-+---.-.|.+.|.+..|..=++...+
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 34455566666666666666665543 33344444445556666666666665555544
No 448
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=20.15 E-value=1.8e+02 Score=23.98 Aligned_cols=72 Identities=13% Similarity=0.068 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007695 506 VSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLA-GGFLQDAQRVHGLMEAQGFAASERLKVAL 578 (592)
Q Consensus 506 ~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~-~g~~~~A~~l~~~m~~~g~~pd~~~~~~l 578 (592)
..++.-|...|+.++|...++++... .......+..+-.++-+ ....+.+..++..+...++.+...+..++
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~-~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~~~~~~~~gf 78 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLP-SQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLISKEQFQEGF 78 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-G-GGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS-HHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCC-ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
No 449
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=20.14 E-value=4.4e+02 Score=25.46 Aligned_cols=58 Identities=19% Similarity=0.146 Sum_probs=31.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc----C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007695 401 TLLVEAYGQAGDPDQARSNFDYMIRL----G-HKPDDRCTASMIAAYGKKNLLDKALNLLLEL 458 (592)
Q Consensus 401 ~~Li~~~~~~g~~~~A~~lf~~m~~~----g-~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m 458 (592)
-.+...|.+.|++++|.++|+.+... | ..+...+...+..++.+.|+.+..+.+--+|
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34566677777777777777766331 1 1122333444555556666666655544433
No 450
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=20.02 E-value=1e+03 Score=25.92 Aligned_cols=44 Identities=23% Similarity=0.337 Sum_probs=23.0
Q ss_pred HHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007695 239 LYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMN 284 (592)
Q Consensus 239 ~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~ 284 (592)
+....+....+..|+..+......++. ...|++..|...++++.
T Consensus 191 el~~~L~~i~~~egi~ie~eAL~~Ia~--~s~GslR~al~~Ldkai 234 (507)
T PRK06645 191 EIFKLLEYITKQENLKTDIEALRIIAY--KSEGSARDAVSILDQAA 234 (507)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHH
Confidence 334444444445555555554444443 23466666666666654
No 451
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=20.00 E-value=2e+02 Score=21.52 Aligned_cols=10 Identities=20% Similarity=0.355 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 007695 483 INEAEQLLGK 492 (592)
Q Consensus 483 ~~~A~~l~~~ 492 (592)
++++...+.+
T Consensus 24 ieDtiy~L~~ 33 (65)
T PF09454_consen 24 IEDTIYYLDR 33 (65)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
Done!