Query 007695
Match_columns 592
No_of_seqs 596 out of 2799
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 08:11:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007695.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007695hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 6.8E-30 2.3E-34 281.8 40.6 392 170-572 98-583 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.5E-28 5.2E-33 271.0 44.0 378 195-581 87-559 (597)
3 4g26_A Pentatricopeptide repea 100.0 9.9E-30 3.4E-34 273.6 25.0 202 278-479 11-222 (501)
4 4g26_A Pentatricopeptide repea 100.0 2.2E-29 7.7E-34 270.9 25.9 196 250-445 18-223 (501)
5 1w3b_A UDP-N-acetylglucosamine 99.9 1.9E-23 6.6E-28 217.6 45.7 359 202-572 10-372 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 1.7E-22 5.9E-27 210.5 40.6 372 169-552 12-388 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 1.2E-19 4E-24 192.4 39.6 309 254-572 23-362 (450)
8 2y4t_A DNAJ homolog subfamily 99.9 5.4E-19 1.8E-23 187.2 40.7 318 235-563 40-406 (450)
9 2gw1_A Mitochondrial precursor 99.9 2.4E-19 8.2E-24 192.9 37.6 360 203-572 18-482 (514)
10 3ieg_A DNAJ homolog subfamily 99.8 3.4E-17 1.1E-21 167.0 41.9 316 256-580 2-348 (359)
11 3fp2_A TPR repeat-containing p 99.8 1.4E-16 4.9E-21 172.4 41.7 356 203-567 37-492 (537)
12 2gw1_A Mitochondrial precursor 99.8 4.7E-17 1.6E-21 174.9 35.4 328 233-572 18-448 (514)
13 3ieg_A DNAJ homolog subfamily 99.8 7.1E-16 2.4E-20 157.1 41.0 303 234-548 16-351 (359)
14 3hym_B Cell division cycle pro 99.8 6.4E-17 2.2E-21 163.1 32.1 295 253-554 18-322 (330)
15 3hym_B Cell division cycle pro 99.8 2.4E-16 8.3E-21 158.9 31.5 286 289-582 19-314 (330)
16 1fch_A Peroxisomal targeting s 99.8 1.3E-16 4.5E-21 163.9 25.4 288 270-562 38-355 (368)
17 1fch_A Peroxisomal targeting s 99.7 2.8E-16 9.6E-21 161.4 26.8 265 257-527 64-355 (368)
18 3fp2_A TPR repeat-containing p 99.7 2.5E-15 8.5E-20 162.6 33.9 320 233-566 37-407 (537)
19 4eqf_A PEX5-related protein; a 99.7 6.9E-16 2.3E-20 158.8 25.0 274 257-561 65-351 (365)
20 4eqf_A PEX5-related protein; a 99.7 1.1E-15 3.9E-20 157.1 24.9 274 221-527 64-352 (365)
21 3cv0_A Peroxisome targeting si 99.7 4.1E-15 1.4E-19 149.6 28.4 278 258-563 22-312 (327)
22 3cv0_A Peroxisome targeting si 99.7 4.9E-15 1.7E-19 149.0 28.4 275 225-528 24-312 (327)
23 3spa_A Mtrpol, DNA-directed RN 99.7 1.8E-17 6.1E-22 183.8 11.1 153 254-411 124-286 (1134)
24 2xm6_A Protein corresponding t 99.7 3.1E-12 1.1E-16 137.4 49.7 338 204-569 56-435 (490)
25 3spa_A Mtrpol, DNA-directed RN 99.7 5.1E-17 1.7E-21 180.2 10.9 120 326-445 126-249 (1134)
26 2ooe_A Cleavage stimulation fa 99.7 1.3E-13 4.4E-18 149.8 37.1 390 170-566 26-492 (530)
27 3mkr_A Coatomer subunit epsilo 99.7 9.8E-15 3.4E-19 146.0 26.0 251 265-531 7-264 (291)
28 2xm6_A Protein corresponding t 99.6 2.6E-11 8.8E-16 130.2 49.2 330 210-567 26-397 (490)
29 3mkr_A Coatomer subunit epsilo 99.6 7.3E-14 2.5E-18 139.6 27.2 256 299-572 6-268 (291)
30 1b89_A Protein (clathrin heavy 99.6 2.4E-15 8.3E-20 155.4 14.5 263 259-558 34-303 (449)
31 4g1t_A Interferon-induced prot 99.6 9E-13 3.1E-17 140.3 32.7 362 194-572 53-466 (472)
32 1b89_A Protein (clathrin heavy 99.6 6.6E-15 2.2E-19 152.2 14.1 250 269-560 15-266 (449)
33 3uq3_A Heat shock protein STI1 99.6 5.2E-13 1.8E-17 129.1 26.5 224 329-566 7-236 (258)
34 2ooe_A Cleavage stimulation fa 99.6 2.4E-11 8.1E-16 131.9 41.2 366 194-567 15-455 (530)
35 3uq3_A Heat shock protein STI1 99.6 8E-13 2.7E-17 127.8 25.9 223 295-531 8-236 (258)
36 1xi4_A Clathrin heavy chain; a 99.5 1.9E-10 6.6E-15 131.8 45.6 314 198-558 1055-1376(1630)
37 2pl2_A Hypothetical conserved 99.5 1.6E-12 5.5E-17 123.8 23.3 199 254-458 2-211 (217)
38 2pl2_A Hypothetical conserved 99.5 1.6E-12 5.4E-17 123.8 23.0 113 446-562 98-210 (217)
39 2vq2_A PILW, putative fimbrial 99.5 1E-11 3.4E-16 117.3 27.7 202 256-460 7-210 (225)
40 2ho1_A Type 4 fimbrial biogene 99.5 8.1E-12 2.8E-16 120.8 27.2 200 257-460 37-237 (252)
41 2ho1_A Type 4 fimbrial biogene 99.5 1.4E-11 4.7E-16 119.2 28.1 198 365-566 40-238 (252)
42 1ouv_A Conserved hypothetical 99.5 6.2E-11 2.1E-15 116.5 33.1 227 291-566 5-251 (273)
43 2vq2_A PILW, putative fimbrial 99.5 2.9E-11 1E-15 114.1 29.0 201 362-565 8-210 (225)
44 4g1t_A Interferon-induced prot 99.5 8.1E-11 2.8E-15 125.1 35.7 306 256-566 50-401 (472)
45 1ouv_A Conserved hypothetical 99.5 1.1E-10 3.7E-15 114.7 33.3 225 255-497 4-252 (273)
46 3u4t_A TPR repeat-containing p 99.5 7.4E-12 2.5E-16 122.5 24.7 28 504-531 223-250 (272)
47 2h6f_A Protein farnesyltransfe 99.5 1.2E-11 4E-16 128.3 27.3 249 257-513 97-364 (382)
48 1xnf_A Lipoprotein NLPI; TPR, 99.5 1E-12 3.4E-17 128.7 18.3 250 269-560 17-269 (275)
49 3u4t_A TPR repeat-containing p 99.5 1.1E-11 3.7E-16 121.3 25.7 250 258-512 4-265 (272)
50 1xi4_A Clathrin heavy chain; a 99.5 2.3E-10 7.7E-15 131.3 39.3 315 199-572 993-1313(1630)
51 2q7f_A YRRB protein; TPR, prot 99.5 4.5E-12 1.5E-16 121.6 22.1 201 255-460 21-221 (243)
52 2q7f_A YRRB protein; TPR, prot 99.5 6.9E-12 2.4E-16 120.2 22.5 195 331-530 27-221 (243)
53 1xnf_A Lipoprotein NLPI; TPR, 99.5 3E-12 1E-16 125.3 19.2 247 234-490 18-269 (275)
54 2h6f_A Protein farnesyltransfe 99.4 1.5E-11 5E-16 127.5 25.3 249 292-548 97-364 (382)
55 4a1s_A PINS, partner of inscut 99.4 9.3E-12 3.2E-16 129.7 20.6 275 259-565 50-371 (411)
56 3sf4_A G-protein-signaling mod 99.4 2.4E-11 8.1E-16 125.8 22.6 276 254-530 6-335 (406)
57 3sf4_A G-protein-signaling mod 99.4 1.9E-11 6.4E-16 126.6 21.5 262 233-494 21-334 (406)
58 3ro2_A PINS homolog, G-protein 99.4 2.1E-11 7.3E-16 122.1 19.7 275 260-566 8-332 (338)
59 4a1s_A PINS, partner of inscut 99.4 1.6E-11 5.5E-16 127.9 19.4 227 233-459 60-330 (411)
60 3ro2_A PINS homolog, G-protein 99.3 2.9E-11 1E-15 121.1 18.6 269 233-531 17-332 (338)
61 3ulq_A Response regulator aspa 99.3 2E-10 7E-15 118.8 24.7 294 267-565 22-367 (383)
62 3vtx_A MAMA; tetratricopeptide 99.3 4.2E-10 1.4E-14 103.3 23.6 166 256-425 4-169 (184)
63 3vtx_A MAMA; tetratricopeptide 99.3 4.8E-10 1.6E-14 102.9 23.9 166 291-460 4-169 (184)
64 2ond_A Cleavage stimulation fa 99.3 1.9E-09 6.5E-14 108.1 29.1 218 309-530 33-269 (308)
65 2ond_A Cleavage stimulation fa 99.3 2.4E-09 8.3E-14 107.4 29.9 220 274-498 33-272 (308)
66 3e4b_A ALGK; tetratricopeptide 99.3 2.6E-10 8.8E-15 121.2 21.9 188 364-567 178-388 (452)
67 4abn_A Tetratricopeptide repea 99.3 3E-10 1E-14 121.5 21.4 196 361-561 101-316 (474)
68 3nf1_A KLC 1, kinesin light ch 99.2 4E-11 1.4E-15 119.2 13.3 170 256-425 26-223 (311)
69 4abn_A Tetratricopeptide repea 99.2 4.9E-10 1.7E-14 119.8 21.6 213 273-524 84-314 (474)
70 3ulq_A Response regulator aspa 99.2 9.4E-10 3.2E-14 113.8 22.5 230 298-530 109-367 (383)
71 3nf1_A KLC 1, kinesin light ch 99.2 4.4E-10 1.5E-14 111.6 18.6 239 326-565 26-306 (311)
72 3e4b_A ALGK; tetratricopeptide 99.2 2.4E-09 8.1E-14 113.7 24.0 287 259-568 37-353 (452)
73 3q15_A PSP28, response regulat 99.2 4.6E-09 1.6E-13 108.4 25.4 310 253-565 6-364 (378)
74 1hz4_A MALT regulatory protein 99.2 1.7E-08 5.7E-13 103.7 29.2 299 260-566 17-349 (373)
75 3as5_A MAMA; tetratricopeptide 99.2 3.5E-09 1.2E-13 96.1 21.2 163 259-425 10-172 (186)
76 3as5_A MAMA; tetratricopeptide 99.2 4.1E-09 1.4E-13 95.6 21.7 164 293-460 9-172 (186)
77 1hz4_A MALT regulatory protein 99.2 1.7E-08 5.8E-13 103.7 28.7 262 233-495 26-321 (373)
78 4gyw_A UDP-N-acetylglucosamine 99.1 5.5E-09 1.9E-13 116.8 21.2 166 256-425 8-173 (723)
79 4i17_A Hypothetical protein; T 99.1 2.1E-08 7.2E-13 95.3 22.5 196 255-461 5-209 (228)
80 4e6h_A MRNA 3'-END-processing 99.1 8.1E-07 2.8E-11 98.2 37.6 403 162-572 66-574 (679)
81 4gyw_A UDP-N-acetylglucosamine 99.0 8.5E-09 2.9E-13 115.2 21.7 166 291-460 8-173 (723)
82 3q15_A PSP28, response regulat 99.0 3.3E-08 1.1E-12 102.0 23.8 226 301-530 110-364 (378)
83 4i17_A Hypothetical protein; T 99.0 5.4E-08 1.8E-12 92.4 23.4 133 291-425 6-145 (228)
84 3edt_B KLC 2, kinesin light ch 99.0 2.8E-09 9.7E-14 103.9 13.9 227 269-496 13-281 (283)
85 3edt_B KLC 2, kinesin light ch 99.0 4.1E-09 1.4E-13 102.7 14.3 226 339-565 13-280 (283)
86 4e6h_A MRNA 3'-END-processing 98.9 7.1E-06 2.4E-10 90.7 39.4 389 190-581 64-550 (679)
87 2fo7_A Synthetic consensus TPR 98.9 1E-07 3.5E-12 81.1 18.3 125 297-424 6-130 (136)
88 2fo7_A Synthetic consensus TPR 98.8 2.5E-07 8.4E-12 78.6 18.3 128 435-565 4-131 (136)
89 1qqe_A Vesicular transport pro 98.8 2E-07 6.9E-12 92.5 19.1 55 301-355 46-105 (292)
90 1qqe_A Vesicular transport pro 98.8 4.1E-07 1.4E-11 90.2 21.2 173 307-494 32-226 (292)
91 3mv2_B Coatomer subunit epsilo 98.8 2.1E-06 7.1E-11 85.0 24.8 244 264-531 20-282 (310)
92 3qky_A Outer membrane assembly 98.8 3.1E-07 1E-11 89.2 18.8 186 255-460 13-223 (261)
93 3urz_A Uncharacterized protein 98.8 3.4E-07 1.2E-11 85.9 18.4 76 333-410 60-135 (208)
94 3mv2_B Coatomer subunit epsilo 98.8 1.6E-06 5.5E-11 85.8 23.5 180 311-497 85-283 (310)
95 3dra_A Protein farnesyltransfe 98.7 7E-06 2.4E-10 81.7 27.3 165 376-543 124-299 (306)
96 3urz_A Uncharacterized protein 98.7 4.5E-07 1.6E-11 85.0 17.8 169 259-436 6-194 (208)
97 3qky_A Outer membrane assembly 98.7 5.3E-07 1.8E-11 87.5 18.9 183 225-427 19-225 (261)
98 3rjv_A Putative SEL1 repeat pr 98.7 1.7E-06 5.8E-11 81.4 20.6 176 275-462 4-198 (212)
99 2uy1_A Cleavage stimulation fa 98.7 7.8E-05 2.7E-09 79.6 35.7 358 190-565 13-412 (493)
100 2pzi_A Probable serine/threoni 98.7 1.8E-07 6.1E-12 104.5 14.9 173 268-447 402-583 (681)
101 2pzi_A Probable serine/threoni 98.7 2.3E-07 7.9E-12 103.6 15.5 174 373-552 402-583 (681)
102 3dra_A Protein farnesyltransfe 98.6 1.2E-05 4.2E-10 79.9 26.1 228 339-572 44-292 (306)
103 2yhc_A BAMD, UPF0169 lipoprote 98.6 3.9E-06 1.3E-10 79.6 21.6 187 361-567 3-214 (225)
104 3rjv_A Putative SEL1 repeat pr 98.6 2.1E-06 7.1E-11 80.8 19.4 140 311-460 5-157 (212)
105 2vsy_A XCC0866; transferase, g 98.6 1.1E-06 3.8E-11 95.8 19.8 153 271-427 3-158 (568)
106 2r5s_A Uncharacterized protein 98.6 3.8E-07 1.3E-11 83.0 13.2 59 261-320 10-68 (176)
107 2yhc_A BAMD, UPF0169 lipoprote 98.6 3.2E-06 1.1E-10 80.1 20.0 185 257-462 4-214 (225)
108 3qou_A Protein YBBN; thioredox 98.6 9.6E-07 3.3E-11 87.4 16.3 163 256-423 116-281 (287)
109 2vsy_A XCC0866; transferase, g 98.6 1.7E-06 5.8E-11 94.4 19.7 154 305-462 2-158 (568)
110 3qou_A Protein YBBN; thioredox 98.6 1.8E-06 6.2E-11 85.4 18.1 167 289-459 114-282 (287)
111 4ga2_A E3 SUMO-protein ligase 98.6 1.8E-07 6.1E-12 82.9 9.1 81 297-379 36-116 (150)
112 2r5s_A Uncharacterized protein 98.6 6.9E-07 2.4E-11 81.2 13.2 159 402-564 11-171 (176)
113 2ifu_A Gamma-SNAP; membrane fu 98.5 3E-06 1E-10 84.6 18.7 160 299-459 43-222 (307)
114 4ga2_A E3 SUMO-protein ligase 98.5 3.3E-07 1.1E-11 81.2 10.2 143 300-446 5-148 (150)
115 2ifu_A Gamma-SNAP; membrane fu 98.5 7.7E-06 2.6E-10 81.6 20.0 199 270-494 4-222 (307)
116 3u3w_A Transcriptional activat 98.5 2E-05 6.9E-10 77.8 22.7 163 403-565 81-265 (293)
117 1hh8_A P67PHOX, NCF-2, neutrop 98.5 7.1E-06 2.4E-10 76.4 18.3 126 295-426 9-150 (213)
118 1hh8_A P67PHOX, NCF-2, neutrop 98.4 1.7E-05 5.9E-10 73.7 19.6 128 399-531 8-150 (213)
119 3q7a_A Farnesyltransferase alp 98.4 8.6E-05 2.9E-09 74.8 25.7 263 261-545 58-345 (349)
120 1a17_A Serine/threonine protei 98.4 1.5E-05 5.2E-10 70.5 17.3 125 295-422 16-142 (166)
121 3u3w_A Transcriptional activat 98.4 7.4E-05 2.5E-09 73.7 23.9 163 368-530 81-265 (293)
122 1na0_A Designed protein CTPR3; 98.4 1.7E-05 5.9E-10 66.0 16.5 21 263-283 15-35 (125)
123 2qfc_A PLCR protein; TPR, HTH, 98.4 7.3E-05 2.5E-09 73.7 23.2 167 398-564 76-264 (293)
124 2uy1_A Cleavage stimulation fa 98.4 0.00071 2.4E-08 72.1 32.3 334 203-563 6-380 (493)
125 3q7a_A Farnesyltransferase alp 98.4 0.00023 7.8E-09 71.7 26.6 172 236-413 69-258 (349)
126 1a17_A Serine/threonine protei 98.3 2.4E-05 8E-10 69.2 17.6 128 328-458 14-143 (166)
127 1na0_A Designed protein CTPR3; 98.3 3.2E-05 1.1E-09 64.3 16.8 60 294-354 11-70 (125)
128 4gco_A Protein STI-1; structur 98.3 2.3E-05 8E-10 66.9 15.5 94 260-355 16-109 (126)
129 2vyi_A SGTA protein; chaperone 98.3 2.1E-05 7.1E-10 66.1 15.0 26 364-389 82-107 (131)
130 2lni_A Stress-induced-phosphop 98.3 1.8E-05 6.3E-10 66.9 14.4 59 260-319 19-77 (133)
131 3gw4_A Uncharacterized protein 98.3 8.2E-06 2.8E-10 75.1 13.0 155 268-423 3-173 (203)
132 2qfc_A PLCR protein; TPR, HTH, 98.3 8E-05 2.7E-09 73.4 20.9 166 259-424 77-264 (293)
133 4gco_A Protein STI-1; structur 98.3 2.9E-05 9.9E-10 66.3 15.1 101 468-572 14-114 (126)
134 2c2l_A CHIP, carboxy terminus 98.2 4.9E-06 1.7E-10 82.0 11.4 191 326-530 3-198 (281)
135 2lni_A Stress-induced-phosphop 98.2 3.5E-05 1.2E-09 65.2 15.2 97 327-425 16-112 (133)
136 3gw4_A Uncharacterized protein 98.2 1.6E-05 5.4E-10 73.1 13.9 96 469-564 68-174 (203)
137 2vyi_A SGTA protein; chaperone 98.2 3.7E-05 1.3E-09 64.5 15.1 117 328-447 13-129 (131)
138 2e2e_A Formate-dependent nitri 98.2 1.5E-05 5.2E-10 71.9 12.6 117 270-389 23-142 (177)
139 1p5q_A FKBP52, FK506-binding p 98.2 4.8E-05 1.6E-09 77.0 16.9 122 291-416 146-283 (336)
140 2e2e_A Formate-dependent nitri 98.2 2.3E-05 7.8E-10 70.8 13.2 117 341-460 24-143 (177)
141 2c2l_A CHIP, carboxy terminus 98.2 9.7E-06 3.3E-10 79.8 11.4 194 361-566 3-199 (281)
142 1p5q_A FKBP52, FK506-binding p 98.1 4.4E-05 1.5E-09 77.2 16.5 132 256-389 146-292 (336)
143 3gyz_A Chaperone protein IPGC; 98.1 3.1E-05 1.1E-09 68.5 13.5 101 468-572 37-137 (151)
144 3gyz_A Chaperone protein IPGC; 98.1 8.5E-05 2.9E-09 65.6 16.2 97 362-460 36-132 (151)
145 3dss_A Geranylgeranyl transfer 98.1 0.0017 5.9E-08 64.9 27.4 171 268-443 40-238 (331)
146 2vgx_A Chaperone SYCD; alterna 98.1 3E-05 1E-09 68.2 12.4 96 328-425 22-117 (148)
147 4f3v_A ESX-1 secretion system 98.1 9.2E-05 3.2E-09 72.2 16.6 185 304-496 18-237 (282)
148 2fbn_A 70 kDa peptidylprolyl i 98.1 8.8E-06 3E-10 75.2 8.8 122 329-452 40-176 (198)
149 1elw_A TPR1-domain of HOP; HOP 98.1 0.00013 4.4E-09 59.9 15.3 57 261-318 8-64 (118)
150 2fbn_A 70 kDa peptidylprolyl i 98.1 6.2E-06 2.1E-10 76.2 7.6 156 266-425 13-185 (198)
151 2vgx_A Chaperone SYCD; alterna 98.1 2.5E-05 8.7E-10 68.7 11.2 95 469-565 23-117 (148)
152 4f3v_A ESX-1 secretion system 98.1 0.0001 3.5E-09 71.8 16.3 190 339-532 18-238 (282)
153 1elw_A TPR1-domain of HOP; HOP 98.1 0.00015 5.2E-09 59.5 15.2 113 291-406 3-115 (118)
154 3dss_A Geranylgeranyl transfer 98.0 0.006 2.1E-07 60.9 28.8 154 303-460 40-221 (331)
155 3upv_A Heat shock protein STI1 98.0 0.00016 5.4E-09 61.0 14.9 96 469-566 6-101 (126)
156 3upv_A Heat shock protein STI1 98.0 0.00021 7.3E-09 60.2 15.4 89 368-458 10-98 (126)
157 3q49_B STIP1 homology and U bo 98.0 0.00024 8.1E-09 60.6 15.1 96 467-564 9-104 (137)
158 2xcb_A PCRH, regulatory protei 98.0 0.00015 5E-09 63.0 13.8 92 437-530 23-114 (142)
159 3sz7_A HSC70 cochaperone (SGT) 97.9 0.00026 9E-09 62.8 15.7 97 327-425 11-107 (164)
160 4gcn_A Protein STI-1; structur 97.9 0.00022 7.6E-09 60.6 14.4 59 365-424 11-69 (127)
161 2kck_A TPR repeat; tetratricop 97.9 8.6E-05 2.9E-09 60.4 11.4 99 257-357 6-107 (112)
162 2dba_A Smooth muscle cell asso 97.9 0.00033 1.1E-08 60.3 15.5 98 256-356 27-128 (148)
163 4gcn_A Protein STI-1; structur 97.9 0.00023 7.8E-09 60.6 14.1 103 469-574 10-118 (127)
164 3sz7_A HSC70 cochaperone (SGT) 97.9 0.00027 9.1E-09 62.8 15.0 99 291-391 10-108 (164)
165 3q49_B STIP1 homology and U bo 97.9 0.00031 1.1E-08 59.8 15.0 96 327-424 9-104 (137)
166 4b4t_Q 26S proteasome regulato 97.9 0.00073 2.5E-08 70.1 20.7 197 264-460 11-244 (434)
167 1elr_A TPR2A-domain of HOP; HO 97.9 0.00014 4.8E-09 60.9 12.4 58 260-318 7-64 (131)
168 1elr_A TPR2A-domain of HOP; HO 97.9 0.00016 5.4E-09 60.6 12.5 96 364-460 6-107 (131)
169 4b4t_Q 26S proteasome regulato 97.9 0.00058 2E-08 70.8 19.3 165 400-564 58-243 (434)
170 2dba_A Smooth muscle cell asso 97.9 0.00063 2.2E-08 58.4 16.6 96 433-531 29-128 (148)
171 2xcb_A PCRH, regulatory protei 97.9 0.00027 9.1E-09 61.3 14.0 87 370-458 26-112 (142)
172 2kck_A TPR repeat; tetratricop 97.9 0.00011 3.9E-09 59.6 10.8 26 399-424 42-67 (112)
173 1hxi_A PEX5, peroxisome target 97.7 0.00033 1.1E-08 59.1 11.5 92 472-565 22-113 (121)
174 3ro3_A PINS homolog, G-protein 97.7 0.00032 1.1E-08 60.9 11.8 61 399-459 11-76 (164)
175 3ro3_A PINS homolog, G-protein 97.7 0.00038 1.3E-08 60.4 12.1 131 294-424 11-156 (164)
176 1hxi_A PEX5, peroxisome target 97.6 0.00048 1.7E-08 58.0 11.7 60 363-423 52-111 (121)
177 2xev_A YBGF; tetratricopeptide 97.6 0.0022 7.4E-08 53.7 15.4 23 297-319 44-66 (129)
178 2xev_A YBGF; tetratricopeptide 97.6 0.0015 5E-08 54.8 14.2 88 476-565 11-104 (129)
179 1kt0_A FKBP51, 51 kDa FK506-bi 97.6 0.00057 2E-08 72.1 14.0 88 328-417 318-405 (457)
180 1kt0_A FKBP51, 51 kDa FK506-bi 97.6 0.00084 2.9E-08 70.8 15.3 95 362-458 317-412 (457)
181 1ihg_A Cyclophilin 40; ppiase 97.5 0.00083 2.8E-08 68.7 14.0 86 328-415 274-359 (370)
182 3k9i_A BH0479 protein; putativ 97.5 0.00027 9.2E-09 58.9 8.1 85 340-425 3-89 (117)
183 1wao_1 Serine/threonine protei 97.5 0.00024 8.1E-09 75.5 9.4 118 301-421 15-134 (477)
184 3rkv_A Putative peptidylprolyl 97.5 0.0016 5.3E-08 57.6 13.5 62 398-460 64-125 (162)
185 3k9i_A BH0479 protein; putativ 97.5 0.00018 6.2E-09 60.0 6.8 86 270-356 3-90 (117)
186 1wao_1 Serine/threonine protei 97.5 0.00032 1.1E-08 74.5 10.2 121 404-527 13-135 (477)
187 1ihg_A Cyclophilin 40; ppiase 97.5 0.001 3.4E-08 68.1 13.5 123 259-383 225-362 (370)
188 3rkv_A Putative peptidylprolyl 97.5 0.0015 5.1E-08 57.7 12.9 64 362-426 63-126 (162)
189 1dce_A Protein (RAB geranylger 97.4 0.013 4.3E-07 63.5 21.8 171 378-553 45-242 (567)
190 2if4_A ATFKBP42; FKBP-like, al 97.4 0.00046 1.6E-08 69.7 9.2 60 364-424 232-291 (338)
191 1klx_A Cysteine rich protein B 97.3 0.0071 2.4E-07 52.0 14.8 110 272-392 10-127 (138)
192 1dce_A Protein (RAB geranylger 97.3 0.015 5E-07 63.0 20.3 175 269-448 40-242 (567)
193 1klx_A Cysteine rich protein B 97.3 0.003 1E-07 54.5 12.1 111 306-427 9-127 (138)
194 2if4_A ATFKBP42; FKBP-like, al 97.3 0.00068 2.3E-08 68.4 9.1 150 396-566 178-328 (338)
195 2hr2_A Hypothetical protein; a 97.2 0.0056 1.9E-07 54.0 13.1 101 472-572 16-142 (159)
196 2hr2_A Hypothetical protein; a 97.1 0.0076 2.6E-07 53.1 13.0 61 364-425 59-130 (159)
197 3n71_A Histone lysine methyltr 97.1 0.0032 1.1E-07 66.7 12.1 124 442-565 319-463 (490)
198 3n71_A Histone lysine methyltr 97.0 0.0031 1.1E-07 66.8 11.7 124 302-425 319-463 (490)
199 2l6j_A TPR repeat-containing p 97.0 0.0035 1.2E-07 50.7 9.4 91 256-349 3-100 (111)
200 2kat_A Uncharacterized protein 97.0 0.0059 2E-07 50.2 10.5 78 346-425 4-81 (115)
201 1na3_A Designed protein CTPR2; 96.9 0.0085 2.9E-07 46.4 10.9 79 258-338 10-88 (91)
202 2l6j_A TPR repeat-containing p 96.9 0.00068 2.3E-08 55.1 4.2 61 469-530 6-66 (111)
203 1na3_A Designed protein CTPR2; 96.9 0.012 4.2E-07 45.4 11.3 18 300-317 17-34 (91)
204 2kat_A Uncharacterized protein 96.8 0.011 3.7E-07 48.5 11.2 79 450-530 3-81 (115)
205 1zu2_A Mitochondrial import re 96.6 0.0053 1.8E-07 54.0 7.5 100 268-371 13-133 (158)
206 3ma5_A Tetratricopeptide repea 96.4 0.016 5.5E-07 46.4 9.3 63 396-459 6-68 (100)
207 3ma5_A Tetratricopeptide repea 96.4 0.019 6.5E-07 45.9 9.5 62 467-529 7-68 (100)
208 1zu2_A Mitochondrial import re 96.4 0.009 3.1E-07 52.5 7.7 54 415-471 64-128 (158)
209 3mkq_A Coatomer beta'-subunit; 95.5 0.14 4.8E-06 57.4 14.7 154 335-527 607-761 (814)
210 3mkq_A Coatomer beta'-subunit; 95.5 0.42 1.4E-05 53.5 18.5 46 372-423 662-707 (814)
211 3ly7_A Transcriptional activat 95.2 0.35 1.2E-05 48.5 14.8 73 464-540 274-346 (372)
212 3qww_A SET and MYND domain-con 95.1 0.074 2.5E-06 55.2 10.0 87 269-355 310-410 (433)
213 2kc7_A BFR218_protein; tetratr 95.1 0.078 2.7E-06 41.7 8.1 56 475-531 8-64 (99)
214 3qwp_A SET and MYND domain-con 95.0 0.076 2.6E-06 55.2 9.7 91 264-354 294-398 (429)
215 3qwp_A SET and MYND domain-con 95.0 0.17 5.9E-06 52.4 12.4 88 477-564 297-398 (429)
216 2kc7_A BFR218_protein; tetratr 95.0 0.15 5.3E-06 39.9 9.6 56 370-426 8-64 (99)
217 3qww_A SET and MYND domain-con 95.0 0.06 2.1E-06 55.9 8.7 24 540-563 385-408 (433)
218 3ly7_A Transcriptional activat 94.8 1.1 3.7E-05 45.0 17.0 64 360-425 275-338 (372)
219 3mkq_B Coatomer subunit alpha; 94.4 1.1 3.9E-05 39.7 14.3 130 404-563 12-141 (177)
220 3bee_A Putative YFRE protein; 94.2 0.43 1.5E-05 37.6 10.2 65 361-426 5-72 (93)
221 2v5f_A Prolyl 4-hydroxylase su 93.8 0.52 1.8E-05 37.7 10.3 67 255-321 3-75 (104)
222 3bee_A Putative YFRE protein; 93.7 0.43 1.5E-05 37.6 9.4 47 483-530 25-71 (93)
223 1pc2_A Mitochondria fission pr 93.1 0.61 2.1E-05 40.4 10.0 80 310-391 16-100 (152)
224 3mkq_B Coatomer subunit alpha; 93.1 1.9 6.6E-05 38.3 13.3 48 266-319 14-61 (177)
225 1pc2_A Mitochondria fission pr 93.0 0.63 2.2E-05 40.3 9.9 21 440-460 79-99 (152)
226 2v5f_A Prolyl 4-hydroxylase su 92.4 1.3 4.6E-05 35.2 10.7 21 297-317 10-30 (104)
227 3u64_A Protein TP_0956; tetrat 92.0 1.2 4.1E-05 43.0 11.2 66 504-569 201-272 (301)
228 4h7y_A Dual specificity protei 91.8 1.3 4.6E-05 38.0 10.0 67 514-581 72-138 (161)
229 4b4t_P 26S proteasome regulato 91.6 7.8 0.00027 40.0 18.1 162 366-527 141-320 (445)
230 3u64_A Protein TP_0956; tetrat 90.9 1.2 4.3E-05 42.9 10.1 94 273-368 179-283 (301)
231 1wy6_A Hypothetical protein ST 90.6 7.1 0.00024 32.9 15.2 139 373-533 18-156 (172)
232 2ff4_A Probable regulatory pro 90.2 1.9 6.4E-05 43.8 11.7 75 504-579 173-252 (388)
233 1wy6_A Hypothetical protein ST 89.7 8.4 0.00029 32.5 17.6 62 506-568 95-156 (172)
234 4h7y_A Dual specificity protei 88.6 3 0.0001 35.9 9.6 105 324-430 10-127 (161)
235 1nzn_A CGI-135 protein, fissio 88.3 2.7 9.2E-05 35.0 9.0 81 310-391 19-103 (126)
236 4gns_B Protein CSD3, chitin bi 88.3 1.8 6.1E-05 47.8 10.3 125 296-423 252-397 (754)
237 4b4t_P 26S proteasome regulato 88.2 20 0.00068 36.9 17.9 49 341-389 30-83 (445)
238 1nzn_A CGI-135 protein, fissio 87.3 2.5 8.5E-05 35.2 8.2 65 501-565 34-102 (126)
239 2xl1_A Arginine attenuator pep 85.1 0.31 1E-05 26.6 1.0 19 23-41 3-22 (26)
240 4gns_B Protein CSD3, chitin bi 84.4 5.8 0.0002 43.8 11.7 28 365-392 251-279 (754)
241 4ady_A RPN2, 26S proteasome re 83.6 19 0.00064 40.7 15.4 273 302-584 384-674 (963)
242 1v54_E Cytochrome C oxidase po 83.0 10 0.00036 30.0 9.3 62 482-544 25-86 (109)
243 4ady_A RPN2, 26S proteasome re 82.8 69 0.0024 36.2 20.8 153 302-460 500-657 (963)
244 2ff4_A Probable regulatory pro 82.5 6.3 0.00022 39.9 10.5 68 366-434 175-247 (388)
245 4fhn_B Nucleoporin NUP120; pro 80.0 23 0.00077 41.4 15.4 168 262-451 817-990 (1139)
246 1qsa_A Protein (soluble lytic 79.0 74 0.0025 34.2 27.9 287 261-566 76-410 (618)
247 4fhn_B Nucleoporin NUP120; pro 78.2 18 0.00063 42.2 13.8 86 468-555 900-989 (1139)
248 3lvg_A Clathrin heavy chain 1; 77.9 0.0037 1.3E-07 64.3 -15.1 262 259-557 56-324 (624)
249 2y69_E Cytochrome C oxidase su 77.0 18 0.00061 30.3 9.3 63 482-545 68-130 (152)
250 1v54_E Cytochrome C oxidase po 75.4 12 0.00041 29.6 7.5 48 344-391 27-74 (109)
251 3o48_A Mitochondria fission 1 70.6 26 0.00089 29.3 9.0 66 465-530 38-106 (134)
252 1y8m_A FIS1; mitochondria, unk 70.1 49 0.0017 28.0 11.4 71 254-326 36-109 (144)
253 3o48_A Mitochondria fission 1 69.1 36 0.0012 28.4 9.5 68 254-321 37-107 (134)
254 3txn_A 26S proteasome regulato 64.3 1.2E+02 0.0042 30.4 23.6 25 259-283 21-45 (394)
255 2y69_E Cytochrome C oxidase su 64.1 25 0.00087 29.4 7.5 46 346-391 72-117 (152)
256 1y8m_A FIS1; mitochondria, unk 63.1 69 0.0023 27.1 12.6 23 543-565 83-105 (144)
257 3txn_A 26S proteasome regulato 62.5 1.3E+02 0.0045 30.1 17.0 27 363-389 20-46 (394)
258 3ffl_A Anaphase-promoting comp 60.9 43 0.0015 29.1 8.8 114 438-564 26-149 (167)
259 1zbp_A Hypothetical protein VP 60.2 24 0.00083 33.4 7.7 54 371-425 6-59 (273)
260 4b4t_R RPN7, 26S proteasome re 59.0 88 0.003 31.7 12.6 59 295-353 134-194 (429)
261 4b4t_R RPN7, 26S proteasome re 58.5 1E+02 0.0035 31.2 13.0 97 364-460 133-236 (429)
262 3ffl_A Anaphase-promoting comp 58.3 93 0.0032 27.0 10.8 122 400-534 23-154 (167)
263 1zbp_A Hypothetical protein VP 54.8 26 0.00091 33.1 6.9 54 406-460 6-59 (273)
264 3esl_A Checkpoint serine/threo 53.4 1.3E+02 0.0043 27.1 11.5 79 248-326 68-149 (202)
265 1wdy_A 2-5A-dependent ribonucl 51.1 7 0.00024 36.6 2.5 45 261-309 6-53 (285)
266 3ltm_A Alpha-REP4; protein eng 48.5 1.4E+02 0.0048 26.1 18.3 17 361-377 94-110 (211)
267 2p58_C Putative type III secre 48.1 1E+02 0.0034 24.4 8.6 82 237-330 23-106 (116)
268 2uwj_G Type III export protein 47.8 97 0.0033 24.4 7.8 82 237-330 22-105 (115)
269 3esl_A Checkpoint serine/threo 46.9 1.6E+02 0.0055 26.4 10.5 56 480-535 92-148 (202)
270 3lpz_A GET4 (YOR164C homolog); 43.3 2.4E+02 0.0083 27.4 21.9 167 259-459 37-214 (336)
271 2p58_C Putative type III secre 43.0 1.2E+02 0.0042 23.9 8.2 76 272-357 22-99 (116)
272 2uwj_G Type III export protein 42.1 1.2E+02 0.004 24.0 7.5 76 272-357 21-98 (115)
273 3eiq_C Programmed cell death p 41.8 1.4E+02 0.0047 29.5 10.2 67 400-467 220-288 (358)
274 3eiq_C Programmed cell death p 41.6 1.6E+02 0.0056 29.0 10.7 26 329-354 56-81 (358)
275 2wpv_A GET4, UPF0363 protein Y 41.1 2.5E+02 0.0086 27.0 23.4 110 297-421 38-158 (312)
276 2wpv_A GET4, UPF0363 protein Y 40.1 2.6E+02 0.0089 26.9 24.3 167 259-459 35-215 (312)
277 1wdy_A 2-5A-dependent ribonucl 39.1 32 0.0011 31.9 5.1 26 262-291 41-66 (285)
278 1ej5_A WAsp, wiskott-aldrich s 37.7 17 0.00059 29.1 2.3 57 35-91 23-90 (107)
279 2d2s_A Exocyst complex compone 37.0 2.5E+02 0.0085 25.7 10.8 89 263-354 24-118 (235)
280 3lpz_A GET4 (YOR164C homolog); 35.9 3.2E+02 0.011 26.6 24.6 166 365-565 38-215 (336)
281 1k1a_A B-cell lymphoma 3-encod 35.7 26 0.0009 31.7 3.8 46 264-309 13-60 (241)
282 3lvg_A Clathrin heavy chain 1; 34.4 13 0.00044 38.6 1.4 79 198-276 235-323 (624)
283 2r9g_A AAA ATPase, central reg 31.8 2.7E+02 0.0092 24.9 9.3 17 446-462 28-44 (204)
284 4a1g_A Mitotic checkpoint seri 31.7 2.4E+02 0.0082 23.9 10.8 50 276-325 84-134 (152)
285 2nsz_A Programmed cell death p 31.4 1.8E+02 0.006 23.8 7.8 66 400-466 10-77 (129)
286 1k1a_A B-cell lymphoma 3-encod 31.3 51 0.0018 29.6 5.0 22 371-392 15-36 (241)
287 3eu9_A Huntingtin-interacting 30.1 29 0.00099 31.2 3.0 10 300-309 47-56 (240)
288 2wvi_A Mitotic checkpoint seri 29.7 2.7E+02 0.0092 24.0 11.4 53 275-327 78-131 (164)
289 2nsz_A Programmed cell death p 29.2 2.1E+02 0.0073 23.3 8.0 64 469-533 9-74 (129)
290 1qsa_A Protein (soluble lytic 28.9 5.5E+02 0.019 27.3 32.6 257 189-459 69-346 (618)
291 4a1g_A Mitotic checkpoint seri 28.5 2.7E+02 0.0093 23.6 9.4 31 504-534 103-133 (152)
292 3ltm_A Alpha-REP4; protein eng 28.1 2.9E+02 0.01 23.9 19.9 110 291-412 63-172 (211)
293 4ets_A Ferric uptake regulatio 27.8 1.3E+02 0.0045 25.7 6.7 65 242-307 18-84 (162)
294 2zu6_B Programmed cell death p 27.8 4.1E+02 0.014 25.4 11.0 72 505-577 169-242 (307)
295 2xig_A Ferric uptake regulatio 27.8 1.6E+02 0.0055 24.7 7.2 43 299-341 33-75 (150)
296 3ltj_A Alpharep-4; protein eng 27.5 2.9E+02 0.01 23.6 19.8 79 291-377 58-136 (201)
297 2d2s_A Exocyst complex compone 27.4 3.2E+02 0.011 25.0 9.6 89 403-494 24-118 (235)
298 4g8k_A 2-5A-dependent ribonucl 26.7 63 0.0022 31.1 5.0 290 261-571 26-328 (337)
299 3ltj_A Alpharep-4; protein eng 26.1 3.1E+02 0.011 23.5 19.7 110 291-412 27-136 (201)
300 3pvs_A Replication-associated 25.3 5.3E+02 0.018 26.0 11.9 152 272-425 166-358 (447)
301 3eyy_A Putative iron uptake re 25.2 1.8E+02 0.0062 24.2 7.0 57 248-306 10-66 (145)
302 2fe3_A Peroxide operon regulat 24.9 2.7E+02 0.0093 23.0 8.1 58 283-341 13-70 (145)
303 2ion_A PDCD4, programmed cell 24.5 1.6E+02 0.0055 25.0 6.5 67 399-466 11-79 (152)
304 2fe3_A Peroxide operon regulat 24.0 2.4E+02 0.0083 23.4 7.6 64 245-309 10-73 (145)
305 4aez_C MAD3, mitotic spindle c 24.0 3.5E+02 0.012 24.5 8.9 52 274-325 131-183 (223)
306 3jxi_A Vanilloid receptor-rela 23.9 31 0.0011 31.7 2.0 55 264-318 9-72 (260)
307 2r9g_A AAA ATPase, central reg 23.4 4E+02 0.014 23.8 10.6 36 340-376 27-62 (204)
308 1n11_A Ankyrin; clathrin, BAND 23.1 66 0.0023 32.2 4.5 16 203-218 23-38 (437)
309 3ctd_A Putative ATPase, AAA fa 22.8 3.9E+02 0.013 24.0 8.7 92 438-530 38-137 (213)
310 2zu6_B Programmed cell death p 22.3 3.3E+02 0.011 26.1 9.0 25 260-284 6-30 (307)
311 2ion_A PDCD4, programmed cell 22.2 2.1E+02 0.0071 24.2 6.7 66 468-534 10-77 (152)
312 3eyy_A Putative iron uptake re 22.1 2.1E+02 0.0072 23.8 6.8 59 282-342 9-67 (145)
313 4a0t_A Tail fiber protein; vir 22.0 4.6 0.00016 34.4 -3.7 23 21-43 148-171 (227)
314 3bge_A Predicted ATPase; struc 21.6 3E+02 0.01 24.5 7.7 93 438-530 10-110 (201)
315 2xig_A Ferric uptake regulatio 21.6 2.7E+02 0.0093 23.3 7.4 13 484-496 43-55 (150)
316 1mzb_A Ferric uptake regulatio 21.5 2.5E+02 0.0084 23.0 7.0 34 308-341 34-67 (136)
317 1mzb_A Ferric uptake regulatio 20.4 2.6E+02 0.0088 22.9 6.9 62 247-309 8-70 (136)
318 3hra_A Ankyrin repeat family p 20.2 95 0.0033 26.8 4.4 15 557-571 158-172 (201)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.8e-30 Score=281.79 Aligned_cols=392 Identities=10% Similarity=-0.098 Sum_probs=259.2
Q ss_pred HHHHhhcccccCCCCCCCCcchHHHHHHHHccc-ccCCchhHHHHHHhh--cCCCHhhHHHHHHHH-HhhCHHHHHHHHH
Q 007695 170 EKIHERGEMILPEEPKPITGKCKLITDKILSLE-KEEDPSPLLAEWKEL--LQPSRIDWINLLDRL-REQNTQLYFKVAE 245 (592)
Q Consensus 170 ~~~~ea~~~f~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~A~~~~~~~--~~p~~~t~~~lL~~~-~~~~~~~~~~~~~ 245 (592)
|++.+|...|. ......|+.. ....+...+ +.|++++|+.+|+++ ..++..+|+.+..++ ..++.+.+..+++
T Consensus 98 g~~~~A~~~~~--~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 174 (597)
T 2xpi_A 98 QQYKCAAFVGE--KVLDITGNPN-DAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLG 174 (597)
T ss_dssp TCHHHHHHHHH--HHHHHHCCHH-HHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHC
T ss_pred cCchHHHHHHH--HHHhhCCCch-HHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHh
Confidence 45666666661 1111222222 223344444 788888888888877 567777788777777 5566777776665
Q ss_pred HHhhhC--------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-----------------------
Q 007695 246 LVLSEE--------------SFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGI----------------------- 288 (592)
Q Consensus 246 ~~~~~~--------------~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~----------------------- 288 (592)
...... +.+++..+|+.++.+|.+.|++++|.++|++|.+.+.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~ 254 (597)
T 2xpi_A 175 ETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDL 254 (597)
T ss_dssp SSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHH
T ss_pred ccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHH
Confidence 322221 2233567788888888888888888888887765432
Q ss_pred -----------------------------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 007695 289 -----------------------------------------------VPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSH 321 (592)
Q Consensus 289 -----------------------------------------------~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~ 321 (592)
+++..+|+.++.+|.+.|++++|..+|+++.+.
T Consensus 255 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 334 (597)
T 2xpi_A 255 VLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEI 334 (597)
T ss_dssp HHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHc
Confidence 145555666666666666666666666666654
Q ss_pred CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 007695 322 GFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCT 401 (592)
Q Consensus 322 g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 401 (592)
+ +.+..+|+.++.+|.+.|++++|..+++++.+.. +.+..+++.++.+|.+.|++++|.++|+++.+.. +.+..+|+
T Consensus 335 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 411 (597)
T 2xpi_A 335 D-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWI 411 (597)
T ss_dssp C-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred C-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 3 3355566666666666666666666666665432 3356677777777777777777777777776654 44567777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 007695 402 LLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQ 481 (592)
Q Consensus 402 ~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g 481 (592)
.++.+|.+.|++++|..+|+++...++ .+..+|+.++.+|.+.|++++|..+|+++.+.. +.+..+|+.++.+|.+.|
T Consensus 412 ~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 489 (597)
T 2xpi_A 412 GFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKS 489 (597)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhC
Confidence 777777777777777777777776533 366777777777777777777777777776543 335677777777777777
Q ss_pred CHHHHHHHHHHHHhc----CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHH
Q 007695 482 LINEAEQLLGKISEL----GEAPP--FKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQD 555 (592)
Q Consensus 482 ~~~~A~~l~~~m~~~----g~~p~--~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~ 555 (592)
++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|...|+++.+.+ +.++.+|..+..+|.+.|++++
T Consensus 490 ~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~ 568 (597)
T 2xpi_A 490 DMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGL 568 (597)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHH
Confidence 777777777777654 55565 6677777777777777777777777776653 3466777777777777777777
Q ss_pred HHHHHHHHHHCCCCCCH
Q 007695 556 AQRVHGLMEAQGFAASE 572 (592)
Q Consensus 556 A~~l~~~m~~~g~~pd~ 572 (592)
|.+.|+++.+. .|+.
T Consensus 569 A~~~~~~~l~~--~p~~ 583 (597)
T 2xpi_A 569 AITHLHESLAI--SPNE 583 (597)
T ss_dssp HHHHHHHHHHH--CTTC
T ss_pred HHHHHHHHHhc--CCCC
Confidence 77777777664 4554
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.97 E-value=1.5e-28 Score=270.99 Aligned_cols=378 Identities=10% Similarity=-0.045 Sum_probs=306.0
Q ss_pred HHHHHccc-ccCCchhHHHHHHhh--cCCCHhhHHHHHHHH-HhhCHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHc
Q 007695 195 TDKILSLE-KEEDPSPLLAEWKEL--LQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKE 270 (592)
Q Consensus 195 ~~~l~~~~-~~g~~~~A~~~~~~~--~~p~~~t~~~lL~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~ 270 (592)
...+...+ +.|++++|+.+|+++ ..|+..+|..+..++ ..++.+.+...+..+.. .++++.+++.++.+|.+.
T Consensus 87 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~l~~~~~~~ 163 (597)
T 2xpi_A 87 LRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL---YNRSSACRYLAAFCLVKL 163 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG---GGTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc---cccchhHHHHHHHHHHHH
Confidence 34455444 999999999999998 568889999988888 66778888888877643 368899999999999999
Q ss_pred CCHHHHHHHHHHHH-HC--------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC------------
Q 007695 271 NCLEDAERILKKMN-EN--------------GIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGF------------ 323 (592)
Q Consensus 271 g~~~~A~~l~~~m~-~~--------------g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~------------ 323 (592)
|++++|.++|+++. .. |.+++..+|+.++.+|.+.|++++|.++|++|.+.+.
T Consensus 164 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 243 (597)
T 2xpi_A 164 YDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSN 243 (597)
T ss_dssp TCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHT
T ss_pred hhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHh
Confidence 99999999999532 21 2334688999999999999999999999999865421
Q ss_pred ----------------------------------------------------------CCCHHHHHHHHHHHHHcCCchH
Q 007695 324 ----------------------------------------------------------QPDKKVYNSMIMAYVNAGQPKL 345 (592)
Q Consensus 324 ----------------------------------------------------------~pd~~t~~~li~a~~~~g~~~~ 345 (592)
+++..+|+.++.+|.+.|++++
T Consensus 244 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 323 (597)
T 2xpi_A 244 HLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFID 323 (597)
T ss_dssp TCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHH
T ss_pred hcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHH
Confidence 2567777888888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007695 346 GMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR 425 (592)
Q Consensus 346 A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~ 425 (592)
|..+|+++.+.+. .+..+++.++.+|.+.|++++|..+++.+.... +.+..+|+.++.+|.+.|++++|..+|+++..
T Consensus 324 A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 401 (597)
T 2xpi_A 324 VLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSST 401 (597)
T ss_dssp HHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 8888888877543 366778888888888888888888888887654 56788899999999999999999999999887
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHH
Q 007695 426 LGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQ 505 (592)
Q Consensus 426 ~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~ 505 (592)
..+ .+..+|+.++.+|.+.|++++|+.+|+++.+.+ +.+..+|..++.+|.+.|++++|.++|+++.+.... +..+|
T Consensus 402 ~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~ 478 (597)
T 2xpi_A 402 MDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY-DPLLL 478 (597)
T ss_dssp HCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-CHHHH
T ss_pred hCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHH
Confidence 543 367789999999999999999999999988754 346788899999999999999999999999876544 78889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007695 506 VSLCDMYARAGIEKKALQALGFLEAK----KEQMG--PDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579 (592)
Q Consensus 506 ~~Li~~~~~~g~~~~A~~~~~~m~~~----~~~~~--~~~~~~li~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~l~ 579 (592)
+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++|+++.+.+ +.+..++..+.
T Consensus 479 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~ 557 (597)
T 2xpi_A 479 NELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIA 557 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 99999999999999999999988765 44666 6789999999999999999999999988764 22444444444
Q ss_pred hh
Q 007695 580 SS 581 (592)
Q Consensus 580 ~~ 581 (592)
.+
T Consensus 558 ~~ 559 (597)
T 2xpi_A 558 LV 559 (597)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=9.9e-30 Score=273.65 Aligned_cols=202 Identities=19% Similarity=0.221 Sum_probs=107.5
Q ss_pred HHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC---------chHHH
Q 007695 278 RILKKMNENGIVPDI-VTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQ---------PKLGM 347 (592)
Q Consensus 278 ~l~~~m~~~g~~pd~-~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~---------~~~A~ 347 (592)
.+.+.+.+.+..+.+ ..++.+|++|++.|++++|.++|++|.+.|++||..|||+||.+|++.+. ++.|.
T Consensus 11 ~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~ 90 (501)
T 4g26_A 11 NLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGF 90 (501)
T ss_dssp -------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHH
T ss_pred HHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHH
Confidence 333444444433322 23444555555555555555555555555555555555555555544333 34555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 007695 348 SLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427 (592)
Q Consensus 348 ~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g 427 (592)
++|++|...|+.||..||++||.+|++.|++++|.++|++|...|+.||..+|+++|.+|++.|++++|.++|++|...|
T Consensus 91 ~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G 170 (501)
T 4g26_A 91 DIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESE 170 (501)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 55555555555555555555555555555555566666655555555666666666666666666666666666665556
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 007695 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479 (592)
Q Consensus 428 ~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~ 479 (592)
+.||..||++||.+|++.|++++|.++|++|.+.|..|+..||+.++..|+.
T Consensus 171 ~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 171 VVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 6666666666666666666666666666666555556666666655555543
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=2.2e-29 Score=270.88 Aligned_cols=196 Identities=17% Similarity=0.209 Sum_probs=183.1
Q ss_pred hCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC---------HHHHHHHHHHHH
Q 007695 250 EESFQTNV-RDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN---------LDRAKEAFESLR 319 (592)
Q Consensus 250 ~~~~~p~~-~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~---------~~~A~~~~~~m~ 319 (592)
+.+..+.+ ..++.+|++|++.|++++|.++|++|.+.|+.||..|||+||.+|++.+. ++.|.++|++|.
T Consensus 18 ~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~ 97 (501)
T 4g26_A 18 KKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMI 97 (501)
T ss_dssp ------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHH
T ss_pred HhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHH
Confidence 34444443 45899999999999999999999999999999999999999999998765 688999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Q 007695 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLES 399 (592)
Q Consensus 320 ~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 399 (592)
..|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+
T Consensus 98 ~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~t 177 (501)
T 4g26_A 98 VDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPE 177 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 007695 400 CTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKK 445 (592)
Q Consensus 400 ~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~ 445 (592)
|++||.+|++.|++++|.++|++|.+.|..|+..||+.++..|+..
T Consensus 178 y~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 178 LAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999998764
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=1.9e-23 Score=217.64 Aligned_cols=359 Identities=14% Similarity=0.040 Sum_probs=310.0
Q ss_pred cccCCchhHHHHHHhh--cCCCHhhHHHHHHHH--HhhCHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007695 202 EKEEDPSPLLAEWKEL--LQPSRIDWINLLDRL--REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAE 277 (592)
Q Consensus 202 ~~~g~~~~A~~~~~~~--~~p~~~t~~~lL~~~--~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~ 277 (592)
++.|++++|+..+..+ ..|+......++..+ ..+..+.+...+...+.. .+.+..+|..+..++.+.|++++|.
T Consensus 10 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~--~p~~~~~~~~lg~~~~~~g~~~~A~ 87 (388)
T 1w3b_A 10 YQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ--NPLLAEAYSNLGNVYKERGQLQEAI 87 (388)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCCHHHHH
Confidence 3899999999999887 467666555555544 566788888887777654 3568889999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCC
Q 007695 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSG 357 (592)
Q Consensus 278 ~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g 357 (592)
..|+++.+.. +.+..+|..+..++.+.|++++|...|+++.+.. +.+..++..+...+...|++++|.+.|+++....
T Consensus 88 ~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 165 (388)
T 1w3b_A 88 EHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ 165 (388)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 9999998863 2356789999999999999999999999998764 4456678888899999999999999999999864
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 007695 358 IERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTAS 437 (592)
Q Consensus 358 ~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~ 437 (592)
+-+..+|..+...+.+.|++++|...|+++...+ +.+...|..+...+...|++++|...|++.....+. +..++..
T Consensus 166 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~ 242 (388)
T 1w3b_A 166 -PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGN 242 (388)
T ss_dssp -TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHHHHHH
Confidence 3368899999999999999999999999999876 567889999999999999999999999999885432 5788999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCC
Q 007695 438 MIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGI 517 (592)
Q Consensus 438 li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~ 517 (592)
+..+|...|++++|...|+++.+.. +.+..+|..+..++.+.|++++|...++++.+... .+..++..+...+...|+
T Consensus 243 l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~ 320 (388)
T 1w3b_A 243 LACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP-THADSLNNLANIKREQGN 320 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHcCC
Confidence 9999999999999999999998854 33578899999999999999999999999998754 488999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH
Q 007695 518 EKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASE 572 (592)
Q Consensus 518 ~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~g~~pd~ 572 (592)
+++|...++++.+. .+.+..++..+..+|.+.|++++|++.|+++.+ +.|+.
T Consensus 321 ~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~ 372 (388)
T 1w3b_A 321 IEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTF 372 (388)
T ss_dssp HHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTC
T ss_pred HHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCC
Confidence 99999999999876 344678899999999999999999999999986 46665
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.93 E-value=1.7e-22 Score=210.46 Aligned_cols=372 Identities=12% Similarity=-0.013 Sum_probs=309.7
Q ss_pred HHHHHhhcccccCCCCCCCCcchHHHHHHHHccc-ccCCchhHHHHHHhhc--C-CCHhhHHHHHHHH-HhhCHHHHHHH
Q 007695 169 AEKIHERGEMILPEEPKPITGKCKLITDKILSLE-KEEDPSPLLAEWKELL--Q-PSRIDWINLLDRL-REQNTQLYFKV 243 (592)
Q Consensus 169 ~~~~~ea~~~f~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~A~~~~~~~~--~-p~~~t~~~lL~~~-~~~~~~~~~~~ 243 (592)
.|++.+|...+ .......|+...+...+..++ +.|++++|...++... . .+..+|..+...+ ..++.+.+...
T Consensus 12 ~g~~~~A~~~~--~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 89 (388)
T 1w3b_A 12 AGDFEAAERHC--MQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEH 89 (388)
T ss_dssp HTCHHHHHHHH--HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CCCHHHHHHHH--HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 56777777766 111222343334455555666 8999999999998762 3 4567788888877 67788999999
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 007695 244 AELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGF 323 (592)
Q Consensus 244 ~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~ 323 (592)
++..+... +.+..+|..+..++.+.|++++|.+.|+++.+.... +...+..+...+...|++++|.+.|+++.+..
T Consensus 90 ~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~- 165 (388)
T 1w3b_A 90 YRHALRLK--PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIETQ- 165 (388)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHcC--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-
Confidence 98887642 446678999999999999999999999999886422 56677888899999999999999999998764
Q ss_pred CCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 007695 324 QPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLL 403 (592)
Q Consensus 324 ~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L 403 (592)
+.+..+|+.+...|...|++++|...|+++...+. -+...|..+...+...|++++|...+.+..... +.+..++..+
T Consensus 166 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 243 (388)
T 1w3b_A 166 PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNL 243 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHH
Confidence 45688999999999999999999999999998653 368889999999999999999999999998875 5568999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 007695 404 VEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLI 483 (592)
Q Consensus 404 i~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~ 483 (592)
...|.+.|++++|...|+++....+. +..+|..+..+|.+.|++++|...|+++.+.. +.+..++..+...+...|++
T Consensus 244 ~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 321 (388)
T 1w3b_A 244 ACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNI 321 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCH
Confidence 99999999999999999999986443 57789999999999999999999999998753 56788999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Q 007695 484 NEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGF 552 (592)
Q Consensus 484 ~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~ 552 (592)
++|...++++.+.... +..++..+...|.+.|++++|...|+++.+.. +.++..|..+...+...|+
T Consensus 322 ~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 322 EEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHHTTSCTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHhHHHHHHHccC
Confidence 9999999999886433 68899999999999999999999999998763 3467788888887776653
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.89 E-value=1.2e-19 Score=192.35 Aligned_cols=309 Identities=11% Similarity=0.042 Sum_probs=235.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007695 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333 (592)
Q Consensus 254 ~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l 333 (592)
+.+...+..+...+.+.|++++|..+|+.+.+.. +.+..+|..+..+|...|++++|...|+++.+.+ +.+..++..+
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 100 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQR 100 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHH
Confidence 3456678888888888888888888888887753 3367788888888888888888888888887764 4567788888
Q ss_pred HHHHHHcCCchHHHHHHHHHHHCCCCCCH---HHHHHH------------HHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Q 007695 334 IMAYVNAGQPKLGMSLVDMMITSGIERSE---EIYLAL------------LRSFAQCGDVRGAGQITNIMRIEEFQPTLE 398 (592)
Q Consensus 334 i~a~~~~g~~~~A~~l~~~m~~~g~~p~~---~t~~~L------------l~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 398 (592)
..+|.+.|++++|...|+++..... .+. .++..+ ...+.+.|++++|...|+.+.... +.+..
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 178 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKSNP-SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAE 178 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChH
Confidence 8888888888888888888876532 133 455444 344788888888888888888765 56778
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-----
Q 007695 399 SCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVL----- 473 (592)
Q Consensus 399 ~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~l----- 473 (592)
++..++.+|.+.|++++|...|+++..... .+..+|..+..+|...|++++|+..|+++.... +.+...+..+
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~ 256 (450)
T 2y4t_A 179 LRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKK 256 (450)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHH
Confidence 888888888888888888888888877533 367788888888888888888888888887642 2233344333
Q ss_pred -------HHHHHHcCCHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 007695 474 -------VDWLGRLQLINEAEQLLGKISELGEAPP----FKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFER 542 (592)
Q Consensus 474 -------i~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 542 (592)
...|.+.|++++|...++++.+.... + ...+..+..++.+.|++++|...++.+... .+.++..|..
T Consensus 257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-~p~~~~~~~~ 334 (450)
T 2y4t_A 257 LNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM-EPDNVNALKD 334 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-CTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CcccHHHHHH
Confidence 67788888888888888888775432 2 346778888888888888888888887765 2346778888
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCCCH
Q 007695 543 IINGLLAGGFLQDAQRVHGLMEAQGFAASE 572 (592)
Q Consensus 543 li~a~~~~g~~~~A~~l~~~m~~~g~~pd~ 572 (592)
+..+|...|++++|...|+++.+ +.|+.
T Consensus 335 l~~~~~~~~~~~~A~~~~~~al~--~~p~~ 362 (450)
T 2y4t_A 335 RAEAYLIEEMYDEAIQDYETAQE--HNEND 362 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHT--TSSSC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHH--hCcch
Confidence 88888888888888888888876 45655
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.88 E-value=5.4e-19 Score=187.23 Aligned_cols=318 Identities=13% Similarity=0.105 Sum_probs=246.1
Q ss_pred hCHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007695 235 QNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEA 314 (592)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~ 314 (592)
++.+.+...+..++.. .+.+..+|..+..++.+.|++++|...|+++.+.+. .+..++..+..+|.+.|++++|...
T Consensus 40 g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~ 116 (450)
T 2y4t_A 40 GQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM-DFTAARLQRGHLLLKQGKLDEAEDD 116 (450)
T ss_dssp TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3334444444433332 245677888888999999999999999999888643 3678888899999999999999999
Q ss_pred HHHHHhCCCCCCH---HHHHHHH------------HHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHH
Q 007695 315 FESLRSHGFQPDK---KVYNSMI------------MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379 (592)
Q Consensus 315 ~~~m~~~g~~pd~---~t~~~li------------~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~ 379 (592)
|+++.+.. +.+. .++..+. ..+...|++++|..+|+++.+.. +.+..++..+..+|.+.|+++
T Consensus 117 ~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~ 194 (450)
T 2y4t_A 117 FKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPR 194 (450)
T ss_dssp HHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHH
Confidence 99998763 2233 5555553 44888999999999999998764 347888999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH------------HHHHHhcCC
Q 007695 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM------------IAAYGKKNL 447 (592)
Q Consensus 380 ~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~l------------i~a~~~~g~ 447 (592)
+|...|+.+.... +.+..++..+..+|...|++++|...|+++....+. +...+..+ ...|.+.|+
T Consensus 195 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 272 (450)
T 2y4t_A 195 KAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGR 272 (450)
T ss_dssp GGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999988765 567889999999999999999999999999875332 34444444 778899999
Q ss_pred HHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007695 448 LDKALNLLLELEKDGFEPG-----PATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKAL 522 (592)
Q Consensus 448 ~~~A~~l~~~m~~~g~~p~-----~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~ 522 (592)
+++|..+|..+.+. .|+ ..++..+..++.+.|++++|...++++.+.... +..+|..+..+|...|++++|.
T Consensus 273 ~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~~~~~~A~ 349 (450)
T 2y4t_A 273 YTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAI 349 (450)
T ss_dssp HHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHH
Confidence 99999999998874 344 457888889999999999999999998876433 7889999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHH------------HHhCC-----CHHHHHHHHHHH
Q 007695 523 QALGFLEAKKEQMGPDDFERIING------------LLAGG-----FLQDAQRVHGLM 563 (592)
Q Consensus 523 ~~~~~m~~~~~~~~~~~~~~li~a------------~~~~g-----~~~~A~~l~~~m 563 (592)
..|+++.+.. +-++..+..+..+ |...| +.+++.+.|+++
T Consensus 350 ~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~ 406 (450)
T 2y4t_A 350 QDYETAQEHN-ENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKL 406 (450)
T ss_dssp HHHHHHHTTS-SSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHH
T ss_pred HHHHHHHHhC-cchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHH
Confidence 9999998753 3356666666533 33344 556778888763
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.87 E-value=2.4e-19 Score=192.94 Aligned_cols=360 Identities=11% Similarity=-0.018 Sum_probs=301.2
Q ss_pred ccCCchhHHHHHHhh--cCCCHhhHHHHHHHH-HhhCHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007695 203 KEEDPSPLLAEWKEL--LQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERI 279 (592)
Q Consensus 203 ~~g~~~~A~~~~~~~--~~p~~~t~~~lL~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l 279 (592)
+.|++++|+..|+++ ..|+...|..+..++ ..++.+.+...+...+... +.+..+|..+..++.+.|++++|...
T Consensus 18 ~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~ 95 (514)
T 2gw1_A 18 RNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK--PDYSKVLLRRASANEGLGKFADAMFD 95 (514)
T ss_dssp HTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 899999999999998 468988888888877 6788999999999887653 45678899999999999999999999
Q ss_pred HHHHHHCCCCC---------------------------------------------------------------------
Q 007695 280 LKKMNENGIVP--------------------------------------------------------------------- 290 (592)
Q Consensus 280 ~~~m~~~g~~p--------------------------------------------------------------------- 290 (592)
|+++...+...
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (514)
T 2gw1_A 96 LSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPEL 175 (514)
T ss_dssp HHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCC
T ss_pred HHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHH
Confidence 99998764210
Q ss_pred ---------CHHHHHHHHHHHHH---cCCHHHHHHHHHHHHh-----CCC--------CCCHHHHHHHHHHHHHcCCchH
Q 007695 291 ---------DIVTSTVLVHMYSK---AGNLDRAKEAFESLRS-----HGF--------QPDKKVYNSMIMAYVNAGQPKL 345 (592)
Q Consensus 291 ---------d~~~~~~Li~~~~~---~g~~~~A~~~~~~m~~-----~g~--------~pd~~t~~~li~a~~~~g~~~~ 345 (592)
+...+..+...+.. .|++++|...|+++.+ ..- +.+..++..+...+...|++++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (514)
T 2gw1_A 176 TFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLG 255 (514)
T ss_dssp CCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHH
Confidence 13333333333443 8999999999999987 311 2235678889999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007695 346 GMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR 425 (592)
Q Consensus 346 A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~ 425 (592)
|..+++++..... +..++..+..+|...|++++|...++.+.... +.+..++..+...|...|++++|...|++...
T Consensus 256 A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 332 (514)
T 2gw1_A 256 AHEDIKKAIELFP--RVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKE 332 (514)
T ss_dssp HHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999999998653 38889999999999999999999999998775 55788999999999999999999999999998
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CC---
Q 007695 426 LGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA-PP--- 501 (592)
Q Consensus 426 ~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~--- 501 (592)
..+. +...+..+...|...|++++|...++.+.+.. +.+..++..+...+...|++++|...++++.+.... ++
T Consensus 333 ~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 410 (514)
T 2gw1_A 333 LDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYV 410 (514)
T ss_dssp TCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSS
T ss_pred hChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHH
Confidence 6543 66788889999999999999999999988753 335678889999999999999999999998765332 12
Q ss_pred -HHHHHHHHHHHHH---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH
Q 007695 502 -FKIQVSLCDMYAR---AGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASE 572 (592)
Q Consensus 502 -~~~~~~Li~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~g~~pd~ 572 (592)
..++..+...|.. .|++++|...++.+.... +.++.++..+...|...|++++|.+.|++..+. .|+.
T Consensus 411 ~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~ 482 (514)
T 2gw1_A 411 GIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADL--ARTM 482 (514)
T ss_dssp CSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSH
T ss_pred HHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--cccc
Confidence 4488999999999 999999999999998863 446788999999999999999999999999875 5665
No 10
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.84 E-value=3.4e-17 Score=166.96 Aligned_cols=316 Identities=11% Similarity=0.039 Sum_probs=254.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007695 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335 (592)
Q Consensus 256 ~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~ 335 (592)
|+..+..+...+.+.|++++|...|+++.+.. +.+..++..+..++...|++++|...|+++.+.. +.+..+|..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 35567788888999999999999999988763 3368888999999999999999999999988763 447788999999
Q ss_pred HHHHcCCchHHHHHHHHHHHCCCC--CCHHHHHHH------------HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 007695 336 AYVNAGQPKLGMSLVDMMITSGIE--RSEEIYLAL------------LRSFAQCGDVRGAGQITNIMRIEEFQPTLESCT 401 (592)
Q Consensus 336 a~~~~g~~~~A~~l~~~m~~~g~~--p~~~t~~~L------------l~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 401 (592)
.|...|++++|...|+++.+.... .+...+..+ ...+...|++++|...++.+.... +.+..++.
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 158 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRE 158 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHH
Confidence 999999999999999999875320 244444444 578889999999999999998876 66788999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH----------
Q 007695 402 LLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYT---------- 471 (592)
Q Consensus 402 ~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~---------- 471 (592)
.+...|...|++++|...|++.....+ .+..++..+...|...|++++|...|+...+.. +.+...+.
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~ 236 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNK 236 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHH
Confidence 999999999999999999999988643 367888889999999999999999999987743 22233222
Q ss_pred --HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 007695 472 --VLVDWLGRLQLINEAEQLLGKISELGEAPPF----KIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIIN 545 (592)
Q Consensus 472 --~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 545 (592)
.+...+.+.|++++|...++++.+.... +. ..+..+...|...|++++|...++...+. .+.++..|..+..
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~ 314 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM-EPDNVNALKDRAE 314 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CcccHHHHHHHHH
Confidence 2366788999999999999999886544 33 23556788999999999999999999886 3447888999999
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHh
Q 007695 546 GLLAGGFLQDAQRVHGLMEAQGFAASE-RLKVALIS 580 (592)
Q Consensus 546 a~~~~g~~~~A~~l~~~m~~~g~~pd~-~~~~~l~~ 580 (592)
.|...|++++|.+.|++..+. .|+. .....+..
T Consensus 315 ~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~ 348 (359)
T 3ieg_A 315 AYLIEEMYDEAIQDYEAAQEH--NENDQQIREGLEK 348 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHHH
Confidence 999999999999999999865 5665 44444433
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.82 E-value=1.4e-16 Score=172.40 Aligned_cols=356 Identities=12% Similarity=0.035 Sum_probs=278.4
Q ss_pred ccCCchhHHHHHHhhc--CC-CHhhHHHHHHHH-HhhCHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007695 203 KEEDPSPLLAEWKELL--QP-SRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAER 278 (592)
Q Consensus 203 ~~g~~~~A~~~~~~~~--~p-~~~t~~~lL~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~~ 278 (592)
+.|++++|+..|+++. .| +...|..+..++ ..++.+.+...+...+... +.+..++..+..++...|++++|..
T Consensus 37 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~ 114 (537)
T 3fp2_A 37 TAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK--PDHSKALLRRASANESLGNFTDAMF 114 (537)
T ss_dssp HTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 8999999999998873 44 556666666666 6778888998888887653 4567788899999999999999999
Q ss_pred HHHHHHHCC------------------------------------CCCCHH-----------------------------
Q 007695 279 ILKKMNENG------------------------------------IVPDIV----------------------------- 293 (592)
Q Consensus 279 l~~~m~~~g------------------------------------~~pd~~----------------------------- 293 (592)
.|+.+.... ..|+..
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (537)
T 3fp2_A 115 DLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYA 194 (537)
T ss_dssp HHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHH
T ss_pred HHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHH
Confidence 886432110 001111
Q ss_pred -HHHHHHHHHH--------HcCCHHHHHHHHHHHHhCCCCCC-------HHHHHHHHHHHHHcCCchHHHHHHHHHHHCC
Q 007695 294 -TSTVLVHMYS--------KAGNLDRAKEAFESLRSHGFQPD-------KKVYNSMIMAYVNAGQPKLGMSLVDMMITSG 357 (592)
Q Consensus 294 -~~~~Li~~~~--------~~g~~~~A~~~~~~m~~~g~~pd-------~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g 357 (592)
....+...+. ..|++++|..+|+++.+.. +.+ ..++..+...+...|++++|...+++.....
T Consensus 195 ~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~ 273 (537)
T 3fp2_A 195 LLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH 273 (537)
T ss_dssp HHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC
Confidence 1111111111 1247889999999998763 223 3357777788899999999999999999854
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 007695 358 IERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTAS 437 (592)
Q Consensus 358 ~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~ 437 (592)
|+..++..+...|...|++++|...+..+.... +.+..++..+...|...|++++|...|++.....+. +...+..
T Consensus 274 --~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~ 349 (537)
T 3fp2_A 274 --PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NVYPYIQ 349 (537)
T ss_dssp --CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CSHHHHH
T ss_pred --CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 568889999999999999999999999999876 567899999999999999999999999999986543 5678888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----CCCHHHHHHHHHHH
Q 007695 438 MIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE-----APPFKIQVSLCDMY 512 (592)
Q Consensus 438 li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~-----~p~~~~~~~Li~~~ 512 (592)
+..+|...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+... ......+..+...|
T Consensus 350 la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~ 428 (537)
T 3fp2_A 350 LACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATIL 428 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHH
Confidence 9999999999999999999998753 34567888999999999999999999999875421 11233355566778
Q ss_pred HHc----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 007695 513 ARA----------GIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQG 567 (592)
Q Consensus 513 ~~~----------g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~g 567 (592)
... |++++|...|+++.... +.++..|..+...|...|++++|.+.|++..+..
T Consensus 429 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 429 ARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 888 99999999999998863 4467889999999999999999999999998764
No 12
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.81 E-value=4.7e-17 Score=174.91 Aligned_cols=328 Identities=11% Similarity=-0.050 Sum_probs=273.6
Q ss_pred HhhCHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007695 233 REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312 (592)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~ 312 (592)
..++.+.+...+...+... |+...|..+..+|.+.|++++|...|+++.+.+ +.+..+|..+..+|.+.|++++|.
T Consensus 18 ~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 93 (514)
T 2gw1_A 18 RNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAM 93 (514)
T ss_dssp HTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHH
Confidence 6788899999999888754 789999999999999999999999999999875 337789999999999999999999
Q ss_pred HHHHHHHhCCCCCC------------------------------------------------------------------
Q 007695 313 EAFESLRSHGFQPD------------------------------------------------------------------ 326 (592)
Q Consensus 313 ~~~~~m~~~g~~pd------------------------------------------------------------------ 326 (592)
..|+++...+ +++
T Consensus 94 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (514)
T 2gw1_A 94 FDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFK 172 (514)
T ss_dssp HHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSC
T ss_pred HHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcC
Confidence 9999987654 111
Q ss_pred -------------HHHHHHHHHHHHH---cCCchHHHHHHHHHHH-----CCC--------CCCHHHHHHHHHHHHhCCC
Q 007695 327 -------------KKVYNSMIMAYVN---AGQPKLGMSLVDMMIT-----SGI--------ERSEEIYLALLRSFAQCGD 377 (592)
Q Consensus 327 -------------~~t~~~li~a~~~---~g~~~~A~~l~~~m~~-----~g~--------~p~~~t~~~Ll~~~~~~g~ 377 (592)
...+......+.. .|++++|..+|+++.. ..- +.+..++..+...+...|+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (514)
T 2gw1_A 173 PELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKND 252 (514)
T ss_dssp CCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCC
Confidence 3333333343443 7999999999999987 311 2235678889999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007695 378 VRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLE 457 (592)
Q Consensus 378 ~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~ 457 (592)
+++|...++.+.... |+..++..+...|...|++++|...|+++..... .+...+..+...|...|++++|...|+.
T Consensus 253 ~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 329 (514)
T 2gw1_A 253 PLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQNYDQAGKDFDK 329 (514)
T ss_dssp HHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 999999999999875 3388999999999999999999999999988644 3677888899999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC
Q 007695 458 LEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQ-MG 536 (592)
Q Consensus 458 m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~-~~ 536 (592)
..+.. +.+...+..+...+...|++++|...++++.+.... +..++..+...|...|++++|...++.+...... +.
T Consensus 330 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 407 (514)
T 2gw1_A 330 AKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDG 407 (514)
T ss_dssp HHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSS
T ss_pred HHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccch
Confidence 98864 335678889999999999999999999999886544 6788999999999999999999999988764221 11
Q ss_pred ----HHHHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCCCCH
Q 007695 537 ----PDDFERIINGLLA---GGFLQDAQRVHGLMEAQGFAASE 572 (592)
Q Consensus 537 ----~~~~~~li~a~~~---~g~~~~A~~l~~~m~~~g~~pd~ 572 (592)
...|..+...|.. .|++++|.+.|+++... .|+.
T Consensus 408 ~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~ 448 (514)
T 2gw1_A 408 IYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL--DPRS 448 (514)
T ss_dssp CSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH--CTTC
T ss_pred HHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh--Cccc
Confidence 3378899999999 99999999999999875 4544
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.80 E-value=7.1e-16 Score=157.07 Aligned_cols=303 Identities=13% Similarity=0.112 Sum_probs=240.3
Q ss_pred hhCHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007695 234 EQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313 (592)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~ 313 (592)
.++.+.+...+...+... +.+..++..+...+...|++++|...|+++.+.. +-+...|..+..+|...|++++|..
T Consensus 16 ~g~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 92 (359)
T 3ieg_A 16 AGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGKLDEAED 92 (359)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCChHHHHH
Confidence 344444444444444332 3456788888999999999999999999988763 2367888999999999999999999
Q ss_pred HHHHHHhCCCCC----CHHHHHHH------------HHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC
Q 007695 314 AFESLRSHGFQP----DKKVYNSM------------IMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGD 377 (592)
Q Consensus 314 ~~~~m~~~g~~p----d~~t~~~l------------i~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~ 377 (592)
.|+++.+. .| +...+..+ ...+...|++++|..+++++.+.. +.+..++..+...+...|+
T Consensus 93 ~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 169 (359)
T 3ieg_A 93 DFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGE 169 (359)
T ss_dssp HHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCC
Confidence 99999876 34 44455544 578889999999999999998864 3478899999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH------------HHHHHHHhc
Q 007695 378 VRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTA------------SMIAAYGKK 445 (592)
Q Consensus 378 ~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~------------~li~a~~~~ 445 (592)
+++|...++...... +.+..++..+...|...|++++|...|+......+. +...+. .+...+.+.
T Consensus 170 ~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~ 247 (359)
T 3ieg_A 170 PRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRD 247 (359)
T ss_dssp HHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999998775 667899999999999999999999999999885432 333332 235668899
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-H----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHH
Q 007695 446 NLLDKALNLLLELEKDGFEPG-P----ATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKK 520 (592)
Q Consensus 446 g~~~~A~~l~~~m~~~g~~p~-~----~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~ 520 (592)
|++++|...+++..+.. |+ . ..+..+..++...|++++|...+++..+.... +..++..+...|...|++++
T Consensus 248 ~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~ 324 (359)
T 3ieg_A 248 GRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPD-NVNALKDRAEAYLIEEMYDE 324 (359)
T ss_dssp TCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHH
Confidence 99999999999988753 33 2 33556778899999999999999999887543 78899999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 007695 521 ALQALGFLEAKKEQMGPDDFERIINGLL 548 (592)
Q Consensus 521 A~~~~~~m~~~~~~~~~~~~~~li~a~~ 548 (592)
|...|+++.+.. +-++..+..+..+..
T Consensus 325 A~~~~~~a~~~~-p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 325 AIQDYEAAQEHN-ENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHHHTTC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence 999999998863 335666666665544
No 14
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.80 E-value=6.4e-17 Score=163.12 Aligned_cols=295 Identities=10% Similarity=-0.028 Sum_probs=234.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 007695 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332 (592)
Q Consensus 253 ~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ 332 (592)
.+.+...+..+...+...|++++|.++|+++.+... .+...+..++.++...|++++|..+|+++.+.. +.+..+|..
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 95 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFA 95 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHH
Confidence 345556777888888999999999999999887643 355667778888899999999999999988754 456788888
Q ss_pred HHHHHHHcC-CchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 007695 333 MIMAYVNAG-QPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAG 411 (592)
Q Consensus 333 li~a~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g 411 (592)
+...+...| ++++|...|++..... +.+..++..+...+...|++++|...++...... +.+...+..+...|...|
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHh
Confidence 999999999 8999999999988764 3357788899999999999999999999988775 445677777889999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHHcCCH
Q 007695 412 DPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG--------FEPGPATYTVLVDWLGRLQLI 483 (592)
Q Consensus 412 ~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g--------~~p~~~ty~~li~~~~~~g~~ 483 (592)
++++|...|++.....+ .+...+..+...|...|++++|...+++..+.. ......++..+..++...|++
T Consensus 174 ~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 174 NSKLAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp CHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 99999999999887644 367788888889999999999999998876531 133357888888888999999
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HhCCCHH
Q 007695 484 NEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL-LAGGFLQ 554 (592)
Q Consensus 484 ~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~-~~~g~~~ 554 (592)
++|...+++..+.... +..++..+...|...|++++|...|++..+.. +.++..+..+..++ ...|+.+
T Consensus 253 ~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 253 AEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence 9999999988876544 67788888888999999999999988887653 34667777777777 4555543
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.78 E-value=2.4e-16 Score=158.85 Aligned_cols=286 Identities=9% Similarity=-0.077 Sum_probs=241.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHH
Q 007695 289 VPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLAL 368 (592)
Q Consensus 289 ~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~L 368 (592)
+.+...+..+...+...|++++|..+|+++.+.. +.+..++..++.++...|++++|..+++++.+.. +.+..++..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 4466677888999999999999999999998764 4566677788899999999999999999999864 3367889999
Q ss_pred HHHHHhCC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 007695 369 LRSFAQCG-DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNL 447 (592)
Q Consensus 369 l~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~ 447 (592)
...+...| ++++|...|+...... +.+..+|..+...|...|++++|...|++....... +...+..+...|...|+
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhh
Confidence 99999999 9999999999998775 556788999999999999999999999999986543 45667778999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CCCCHHHHHHHHHHHHHcCCHH
Q 007695 448 LDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG--------EAPPFKIQVSLCDMYARAGIEK 519 (592)
Q Consensus 448 ~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g--------~~p~~~~~~~Li~~~~~~g~~~ 519 (592)
+++|...+++..+.. +.+...+..+...+...|++++|...++++.+.. ......++..+...|...|+++
T Consensus 175 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 175 SKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 999999999998754 4467889999999999999999999999987642 1334678999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHhhh
Q 007695 520 KALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASE-RLKVALISSQ 582 (592)
Q Consensus 520 ~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~g~~pd~-~~~~~l~~~~ 582 (592)
+|...+++..+.. +.++..|..+...|...|++++|.+.|++..+ +.|+. .....+..+.
T Consensus 254 ~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 254 EALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALG--LRRDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT--TCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHc--cCCCchHHHHHHHHHH
Confidence 9999999998864 34677899999999999999999999999875 46665 4444444443
No 16
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.75 E-value=1.3e-16 Score=163.93 Aligned_cols=288 Identities=13% Similarity=0.014 Sum_probs=191.0
Q ss_pred cCCHHHHHH-HHHHHHHCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchH
Q 007695 270 ENCLEDAER-ILKKMNENGI---VPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKL 345 (592)
Q Consensus 270 ~g~~~~A~~-l~~~m~~~g~---~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~ 345 (592)
.|++++|.. .|++...... ..+...+..+...+.+.|++++|...|+++.+.. +.+..+|..+..+|...|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 345555555 5544332211 0123345555666666666666666666666543 3455566666666666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHH---------------HHHHHHHc
Q 007695 346 GMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTL---------------LVEAYGQA 410 (592)
Q Consensus 346 A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~---------------Li~~~~~~ 410 (592)
|...|+++.+.. +.+..++..+...|...|++++|...++.+.... +.+...+.. .+..+...
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 666666665543 2255566666666666666666666666665543 111111110 23333488
Q ss_pred CCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007695 411 GDPDQARSNFDYMIRLGHKP-DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489 (592)
Q Consensus 411 g~~~~A~~lf~~m~~~g~~p-d~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l 489 (592)
|++++|...|+++....+.. +..++..+...|...|++++|...|++..+.. +.+...+..+..++...|++++|...
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 273 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAA 273 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 89999999999888754322 57788888889999999999999999887743 34577888899999999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----------CHHHHHHHHHHHHhCCCHHHHHHH
Q 007695 490 LGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQM----------GPDDFERIINGLLAGGFLQDAQRV 559 (592)
Q Consensus 490 ~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~----------~~~~~~~li~a~~~~g~~~~A~~l 559 (592)
++++.+.... +..++..+..+|.+.|++++|...|+++....... ...+|..+..+|...|++++|..+
T Consensus 274 ~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 352 (368)
T 1fch_A 274 YRRALELQPG-YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 352 (368)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHh
Confidence 9998876543 67889999999999999999999998877642211 267899999999999999999888
Q ss_pred HHH
Q 007695 560 HGL 562 (592)
Q Consensus 560 ~~~ 562 (592)
+++
T Consensus 353 ~~~ 355 (368)
T 1fch_A 353 DAR 355 (368)
T ss_dssp HTT
T ss_pred HHH
Confidence 764
No 17
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.75 E-value=2.8e-16 Score=161.43 Aligned_cols=265 Identities=10% Similarity=-0.060 Sum_probs=223.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007695 257 VRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336 (592)
Q Consensus 257 ~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a 336 (592)
...+..+...+.+.|++++|...|+++.+.. +.+..+|..+..+|...|++++|...|+++.+.. +.+..++..+...
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~ 141 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVS 141 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 4567888999999999999999999999874 3478889999999999999999999999998765 5588899999999
Q ss_pred HHHcCCchHHHHHHHHHHHCCCCCCHHHHHH---------------HHHHHHhCCCHHHHHHHHHHHHHcCCCC--CHHH
Q 007695 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLA---------------LLRSFAQCGDVRGAGQITNIMRIEEFQP--TLES 399 (592)
Q Consensus 337 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~---------------Ll~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~ 399 (592)
|...|++++|...++++...... +...+.. .+..+...|++++|...++.+.... +. +..+
T Consensus 142 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~ 219 (368)
T 1fch_A 142 FTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLD-PTSIDPDV 219 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHS-TTSCCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhC-cCcccHHH
Confidence 99999999999999999886432 2222221 2444448899999999999998875 33 5899
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 007695 400 CTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479 (592)
Q Consensus 400 ~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~ 479 (592)
+..+...|.+.|++++|...|+++....+ .+..+|..+...|...|++++|...|++..+.. +.+...+..+..+|.+
T Consensus 220 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~ 297 (368)
T 1fch_A 220 QCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCIN 297 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 99999999999999999999999988643 367889999999999999999999999988753 3457889999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCC----------CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007695 480 LQLINEAEQLLGKISELGEAP----------PFKIQVSLCDMYARAGIEKKALQALGF 527 (592)
Q Consensus 480 ~g~~~~A~~l~~~m~~~g~~p----------~~~~~~~Li~~~~~~g~~~~A~~~~~~ 527 (592)
.|++++|...++++.+..... ...+|..+..+|...|+.++|..++++
T Consensus 298 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 298 LGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 999999999999987653321 278999999999999999999988763
No 18
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.74 E-value=2.5e-15 Score=162.64 Aligned_cols=320 Identities=13% Similarity=0.011 Sum_probs=234.0
Q ss_pred HhhCHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007695 233 REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312 (592)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~ 312 (592)
..++.+.+...+...+... +.++..|..+..+|.+.|++++|.+.|+++.+.+ +.+..++..+..+|...|++++|.
T Consensus 37 ~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~ 113 (537)
T 3fp2_A 37 TAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAM 113 (537)
T ss_dssp HTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHH
Confidence 5566777777777776543 4566777888888888888888888888877754 236777777888888888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHC------CCCCCHHHH---------------------
Q 007695 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS------GIERSEEIY--------------------- 365 (592)
Q Consensus 313 ~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~------g~~p~~~t~--------------------- 365 (592)
..|+.+.. .|+ ..+..+..+...+....|...++++... ...|+....
T Consensus 114 ~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (537)
T 3fp2_A 114 FDLSVLSL---NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSN 188 (537)
T ss_dssp HHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCS
T ss_pred HHHHHHhc---CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccc
Confidence 88863322 222 2222334444455556677777666432 112222221
Q ss_pred ---------HHHHHHHHh--------CCCHHHHHHHHHHHHHcCCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHH
Q 007695 366 ---------LALLRSFAQ--------CGDVRGAGQITNIMRIEEFQPT-------LESCTLLVEAYGQAGDPDQARSNFD 421 (592)
Q Consensus 366 ---------~~Ll~~~~~--------~g~~~~A~~~~~~m~~~g~~~~-------~~~~~~Li~~~~~~g~~~~A~~lf~ 421 (592)
..+...+.. .|++++|..+++.+.... +.+ ..++..+...+...|++++|...|+
T Consensus 189 ~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~ 267 (537)
T 3fp2_A 189 YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQ 267 (537)
T ss_dssp SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 112212111 247889999999988764 333 3357777888999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 007695 422 YMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPP 501 (592)
Q Consensus 422 ~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 501 (592)
+..... |+..++..+...|...|++++|...|....+.. +.+..++..+...+...|++++|...++++.+.... +
T Consensus 268 ~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~ 343 (537)
T 3fp2_A 268 ESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-N 343 (537)
T ss_dssp HHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-C
T ss_pred HHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-C
Confidence 999853 557888889999999999999999999988754 346788999999999999999999999999987654 6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 007695 502 FKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQ 566 (592)
Q Consensus 502 ~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~ 566 (592)
...+..+...|...|++++|...++++.... +.++..|..+...|...|++++|.+.|+++.+.
T Consensus 344 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 407 (537)
T 3fp2_A 344 VYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRL 407 (537)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 6889999999999999999999999998873 446778999999999999999999999998754
No 19
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.72 E-value=6.9e-16 Score=158.81 Aligned_cols=274 Identities=9% Similarity=-0.052 Sum_probs=160.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007695 257 VRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336 (592)
Q Consensus 257 ~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a 336 (592)
...+..+...+.+.|++++|..+|+++.+.. +.+..+|..+..+|...|++++|...|+++.+.. +.+..+|..+..+
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3446777777777888888888888777653 2366777777777777777777777777777653 3456677777777
Q ss_pred HHHcCCchHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 007695 337 YVNAGQPKLGMSLVDMMITSGIERSE-EIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQ 415 (592)
Q Consensus 337 ~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~ 415 (592)
|...|++++|...|+++.+.. |+. ..+..+. .....+..+...|...|++++
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~-------------------------~~~~~~~~l~~~~~~~g~~~~ 195 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN--PKYKYLVKNKK-------------------------GSPGLTRRMSKSPVDSSVLEG 195 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--HHHHCC--------------------------------------------CCHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhC--ccchHHHhhhc-------------------------cchHHHHHHHHHHhhhhhHHH
Confidence 777777777777777776532 111 1111110 012233344555555666666
Q ss_pred HHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007695 416 ARSNFDYMIRLGHK-PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494 (592)
Q Consensus 416 A~~lf~~m~~~g~~-pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~ 494 (592)
|...|+++....+. ++..++..+...|...|++++|+..|++..+.. +.+..++..+..+|...|++++|...++++.
T Consensus 196 A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 274 (365)
T 4eqf_A 196 VKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRAL 274 (365)
T ss_dssp HHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66666665554221 145555556666666666666666666655432 2345566666666666666666666666666
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 007695 495 ELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQ-----------MGPDDFERIINGLLAGGFLQDAQRVHG 561 (592)
Q Consensus 495 ~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~-----------~~~~~~~~li~a~~~~g~~~~A~~l~~ 561 (592)
+.... +..++..+..+|...|++++|...|+++...... .+...|..+..++...|+.+.+.++.+
T Consensus 275 ~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 275 EIQPG-FIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HHCTT-CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred hcCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 54333 4666666667777777777777776665542211 124567777777777777777666554
No 20
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.71 E-value=1.1e-15 Score=157.14 Aligned_cols=274 Identities=12% Similarity=-0.027 Sum_probs=170.9
Q ss_pred CHhhHHHHHHHH-HhhCHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007695 221 SRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLV 299 (592)
Q Consensus 221 ~~~t~~~lL~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li 299 (592)
+...|..+-..+ ..++.+.+...++..+... +.+..+|..+...|.+.|++++|...|+++.+.. +.+..+|..+.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 140 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD--PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALA 140 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 344465555555 7788999999999988653 4578889999999999999999999999998864 33688999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH
Q 007695 300 HMYSKAGNLDRAKEAFESLRSHGFQPDK-KVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378 (592)
Q Consensus 300 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~ 378 (592)
.+|...|++++|...|+++.+. .|+. ..+..+. ....++..+...+.+.|++
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~-------------------------~~~~~~~~l~~~~~~~g~~ 193 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKK-------------------------GSPGLTRRMSKSPVDSSVL 193 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CHHHHCC--------------------------------------------CCHHH
T ss_pred HHHHccccHHHHHHHHHHHHHh--CccchHHHhhhc-------------------------cchHHHHHHHHHHhhhhhH
Confidence 9999999999999999999864 2322 1121110 1122334444555555555
Q ss_pred HHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007695 379 RGAGQITNIMRIEEFQP--TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456 (592)
Q Consensus 379 ~~A~~~~~~m~~~g~~~--~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~ 456 (592)
++|...++++.... +. +..++..+...|...|++++|...|++.....+ .+..+|..+..+|...|++++|...|+
T Consensus 194 ~~A~~~~~~al~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~ 271 (365)
T 4eqf_A 194 EGVKELYLEAAHQN-GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRP-EDYSLWNRLGATLANGDRSEEAVEAYT 271 (365)
T ss_dssp HHHHHHHHHHHHHS-CSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55555555555543 22 455555555556666666666666655555322 244555555666666666666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----------CCHHHHHHHHHHHHHcCCHHHHHHHH
Q 007695 457 ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA-----------PPFKIQVSLCDMYARAGIEKKALQAL 525 (592)
Q Consensus 457 ~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~-----------p~~~~~~~Li~~~~~~g~~~~A~~~~ 525 (592)
+..+.. +.+..++..+..+|...|++++|...++++.+.... .+..+|..+..++...|+.+.+..+.
T Consensus 272 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 350 (365)
T 4eqf_A 272 RALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAAN 350 (365)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 555432 223555556666666666666666666655433111 13567888888888888888887765
Q ss_pred HH
Q 007695 526 GF 527 (592)
Q Consensus 526 ~~ 527 (592)
+.
T Consensus 351 ~~ 352 (365)
T 4eqf_A 351 LG 352 (365)
T ss_dssp TT
T ss_pred Hh
Confidence 53
No 21
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.71 E-value=4.1e-15 Score=149.60 Aligned_cols=278 Identities=11% Similarity=-0.004 Sum_probs=188.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007695 258 RDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337 (592)
Q Consensus 258 ~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~ 337 (592)
..+..+...+...|++++|..+|+++.+... .+...+..+..++...|++++|...|+++.+.. +.+..++..+...|
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 3456677777888888888888888777532 367777778888888888888888888877653 44667777777778
Q ss_pred HHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HH-HHHHcCCHHH
Q 007695 338 VNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLL-VE-AYGQAGDPDQ 415 (592)
Q Consensus 338 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L-i~-~~~~~g~~~~ 415 (592)
...|++++|...++++...... +...+..+... .++......+ .. .+...|++++
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~ 156 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYRE 156 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHHH
Confidence 8888888888888777765321 22222222000 0111111122 11 2556667777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007695 416 ARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495 (592)
Q Consensus 416 A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 495 (592)
|...++++...... +...+..+...|...|++++|...+.++.+.. +.+..++..+...+...|++++|...++++.+
T Consensus 157 A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 234 (327)
T 3cv0_A 157 CRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALD 234 (327)
T ss_dssp HHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777777665432 56667777777777777777777777776543 33466777778888888888888888888777
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-----------CHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 007695 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQM-----------GPDDFERIINGLLAGGFLQDAQRVHGLM 563 (592)
Q Consensus 496 ~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~-----------~~~~~~~li~a~~~~g~~~~A~~l~~~m 563 (592)
.... +..++..+...|...|++++|...++++....... ++..|..+..+|...|++++|..++++.
T Consensus 235 ~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 235 INPG-YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred cCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 6433 67788888888888999999998888877653221 4667888889999999999998887643
No 22
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.71 E-value=4.9e-15 Score=149.00 Aligned_cols=275 Identities=11% Similarity=-0.054 Sum_probs=187.5
Q ss_pred HHHHHHHH-HhhCHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007695 225 WINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYS 303 (592)
Q Consensus 225 ~~~lL~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~ 303 (592)
|..+-..+ ..++.+.+...++..+... +.+...+..+...+.+.|++++|.+.|+++.+.. +.+..++..+...|.
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAA--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 43344443 7788999999999887653 4577889999999999999999999999998863 347889999999999
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHhCCCHHHH
Q 007695 304 KAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR--SFAQCGDVRGA 381 (592)
Q Consensus 304 ~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~--~~~~~g~~~~A 381 (592)
..|++++|...|+++.+.. +.+...+..+... .|+......+.. .+...|++++|
T Consensus 101 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~A 157 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQ-PQYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYREC 157 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTS-TTTTTC------------------------------------------CCTTSHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHHHH
Confidence 9999999999999998763 2222223222110 011111112212 24555666677
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007695 382 GQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKD 461 (592)
Q Consensus 382 ~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~ 461 (592)
...++.+.... +.+..++..+...|...|++++|...|+++....+ .+..++..+...|...|++++|...|++..+.
T Consensus 158 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 235 (327)
T 3cv0_A 158 RTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDI 235 (327)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 77776666554 44566677777777777777777777777666432 24566667777777777777777777776654
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007695 462 GFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP-----------PFKIQVSLCDMYARAGIEKKALQALGFL 528 (592)
Q Consensus 462 g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-----------~~~~~~~Li~~~~~~g~~~~A~~~~~~m 528 (592)
. +.+...+..+..++...|++++|...++++....... +..++..+..+|.+.|+.++|..+++..
T Consensus 236 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 236 N-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred C-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 2 2346667777777777788888887777776543221 4678888889999999999998887643
No 23
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.71 E-value=1.8e-17 Score=183.80 Aligned_cols=153 Identities=12% Similarity=0.142 Sum_probs=128.3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 007695 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNE---NGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVY 330 (592)
Q Consensus 254 ~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~---~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~ 330 (592)
..-..+||+||++|++.|++++|.++|+.|.+ .|+.||+.|||+||++||+.|++++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 44556899999999999999999999988764 589999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCc-hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC------HHHHHHH
Q 007695 331 NSMIMAYVNAGQP-KLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT------LESCTLL 403 (592)
Q Consensus 331 ~~li~a~~~~g~~-~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~------~~~~~~L 403 (592)
|++|.++++.|+. +.|.++|++|.+.|+.||..+|++++.++.+.+ +++..+.+ .-++.|+ ..+...|
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~----vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL 278 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT----VLKAVHKV-KPTFSLPPQLPPPVNTSKLL 278 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH----HHHHHGGG-CCCCCCCCCCCCCCCCCTTT
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH----HHHHHHHh-CcccCCCCCCcccccchHHH
Confidence 9999999999985 789999999999999999999999998776643 33333333 2233333 4455566
Q ss_pred HHHHHHcC
Q 007695 404 VEAYGQAG 411 (592)
Q Consensus 404 i~~~~~~g 411 (592)
.+.|.+.+
T Consensus 279 ~dl~s~d~ 286 (1134)
T 3spa_A 279 RDVYAKDG 286 (1134)
T ss_dssp HHHHCCCS
T ss_pred HHHHccCC
Confidence 67776655
No 24
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.69 E-value=3.1e-12 Score=137.41 Aligned_cols=338 Identities=12% Similarity=-0.002 Sum_probs=283.6
Q ss_pred cCCchhHHHHHHhhcC-CCHhhHHHHHHHHH-----hhCHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHH----cCCH
Q 007695 204 EEDPSPLLAEWKELLQ-PSRIDWINLLDRLR-----EQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAK----ENCL 273 (592)
Q Consensus 204 ~g~~~~A~~~~~~~~~-p~~~t~~~lL~~~~-----~~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~----~g~~ 273 (592)
.+++++|+..|++..+ -+...+..|-..+. .++.+.+...++..... .+...+..|...|.. .+++
T Consensus 56 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~ 131 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK----GLPQAQQNLGVMYHEGNGVKVDK 131 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCH
T ss_pred CcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCH
Confidence 7899999999988743 34555555544443 45678888888777643 366778888888888 8899
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCchH
Q 007695 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSK----AGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVN----AGQPKL 345 (592)
Q Consensus 274 ~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~----~g~~~~ 345 (592)
++|...|++..+.| +...+..|...|.. .+++++|.+.|++..+.| +..++..+...|.. .+++++
T Consensus 132 ~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~ 205 (490)
T 2xm6_A 132 AESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAI 205 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHH
Confidence 99999999999875 67788889889988 789999999999999865 78899999999988 899999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHH
Q 007695 346 GMSLVDMMITSGIERSEEIYLALLRSFAQ----CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQ----AGDPDQAR 417 (592)
Q Consensus 346 A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~----~g~~~~A~ 417 (592)
|..+|++..+.| +...+..+...|.. .+++++|...|+.....+ +...+..+...|.. .+++++|.
T Consensus 206 A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~ 279 (490)
T 2xm6_A 206 SAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKAL 279 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHH
Confidence 999999999876 67788888888887 789999999999988765 56788888888888 89999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC---CHHHHHHH
Q 007695 418 SNFDYMIRLGHKPDDRCTASMIAAYGKK-----NLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQ---LINEAEQL 489 (592)
Q Consensus 418 ~lf~~m~~~g~~pd~~t~~~li~a~~~~-----g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g---~~~~A~~l 489 (592)
..|++..+.| +...+..+...|... +++++|+.+|++..+.| +...+..+...|...| ++++|...
T Consensus 280 ~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~ 353 (490)
T 2xm6_A 280 EWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEW 353 (490)
T ss_dssp HHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHH
T ss_pred HHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHH
Confidence 9999998753 456777777788777 89999999999998865 4567777777787766 78999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHH
Q 007695 490 LGKISELGEAPPFKIQVSLCDMYAR----AGIEKKALQALGFLEAKKEQMGPDDFERIINGLLA----GGFLQDAQRVHG 561 (592)
Q Consensus 490 ~~~m~~~g~~p~~~~~~~Li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~----~g~~~~A~~l~~ 561 (592)
|++..+.+ +...+..|...|.. .+++++|...|++..+.+ ++..+..|...|.. .++.++|...|+
T Consensus 354 ~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 427 (490)
T 2xm6_A 354 FRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFD 427 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 99998874 68889999999998 899999999999998865 57788889999988 899999999999
Q ss_pred HHHHCCCC
Q 007695 562 LMEAQGFA 569 (592)
Q Consensus 562 ~m~~~g~~ 569 (592)
+..+.|..
T Consensus 428 ~A~~~~~~ 435 (490)
T 2xm6_A 428 TASTNDMN 435 (490)
T ss_dssp HHHHHHCC
T ss_pred HHHHCCCC
Confidence 99988754
No 25
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.68 E-value=5.1e-17 Score=180.23 Aligned_cols=120 Identities=13% Similarity=0.159 Sum_probs=91.0
Q ss_pred CHHHHHHHHHHHHHcCCchHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 007695 326 DKKVYNSMIMAYVNAGQPKLGMSLVDMMIT---SGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTL 402 (592)
Q Consensus 326 d~~t~~~li~a~~~~g~~~~A~~l~~~m~~---~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 402 (592)
-..|||+||++||+.|++++|.++|.+|.+ .|+.||..|||+||++||+.|++++|.++|++|...|+.||..|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 355788888888888888888888776653 46777888888888888888888888888888887788888888888
Q ss_pred HHHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 007695 403 LVEAYGQAGD-PDQARSNFDYMIRLGHKPDDRCTASMIAAYGKK 445 (592)
Q Consensus 403 Li~~~~~~g~-~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~ 445 (592)
||.++++.|+ .++|.++|++|...|+.||.++|++++.++.+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence 8888877776 367777888887777878888887777655544
No 26
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.68 E-value=1.3e-13 Score=149.80 Aligned_cols=390 Identities=8% Similarity=-0.003 Sum_probs=276.1
Q ss_pred HHHHhhcccccCCCCCCCCcchHHHHHHHHccc-ccCCchhHHHHHHhhc--CCCHhhHHHHHHHH--HhhCHHH----H
Q 007695 170 EKIHERGEMILPEEPKPITGKCKLITDKILSLE-KEEDPSPLLAEWKELL--QPSRIDWINLLDRL--REQNTQL----Y 240 (592)
Q Consensus 170 ~~~~ea~~~f~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~A~~~~~~~~--~p~~~t~~~lL~~~--~~~~~~~----~ 240 (592)
+++.+|+..| .......|.+..+......++ +.|++++|+.+|++++ .|+...|...+.-. ..++... .
T Consensus 26 ~~~~~a~~~~--e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~~~~~~~~~a~~~~ 103 (530)
T 2ooe_A 26 QPIDKARKTY--ERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKEKM 103 (530)
T ss_dssp SCHHHHHHHH--HHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTSTTHHHHH
T ss_pred CCHHHHHHHH--HHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHccchhhHHHHH
Confidence 3455666666 222334455556666777777 8999999999999984 47877787776533 2233333 3
Q ss_pred HHHHHHHhhhCCCCC-CHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--------
Q 007695 241 FKVAELVLSEESFQT-NVRDYSKLIDAHAK---------ENCLEDAERILKKMNENGIVPDIVTSTVLVHMY-------- 302 (592)
Q Consensus 241 ~~~~~~~~~~~~~~p-~~~~y~~Li~~~~~---------~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~-------- 302 (592)
..+++..+...|..| +...|...+....+ .|+++.|..+|++..+....+....|.......
T Consensus 104 ~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~ 183 (530)
T 2ooe_A 104 AQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLA 183 (530)
T ss_dssp HHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHH
Confidence 335555555555544 56678887776655 788999999999998831111123443332211
Q ss_pred -----HHcCCHHHHHHHHHHH------HhCC---CCCC--------HHHHHHHHHHHHHc----CCc----hHHHHHHHH
Q 007695 303 -----SKAGNLDRAKEAFESL------RSHG---FQPD--------KKVYNSMIMAYVNA----GQP----KLGMSLVDM 352 (592)
Q Consensus 303 -----~~~g~~~~A~~~~~~m------~~~g---~~pd--------~~t~~~li~a~~~~----g~~----~~A~~l~~~ 352 (592)
...+++..|..++..+ .+.. ++|+ ...|...+...... ++. ..+..+|++
T Consensus 184 ~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~ 263 (530)
T 2ooe_A 184 KKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQ 263 (530)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHH
Confidence 1235677788777763 2221 3444 34666666443332 232 377889999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHh-------CCCHH-------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007695 353 MITSGIERSEEIYLALLRSFAQ-------CGDVR-------GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARS 418 (592)
Q Consensus 353 m~~~g~~p~~~t~~~Ll~~~~~-------~g~~~-------~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~ 418 (592)
.+... +-+...|..+...+.+ .|+++ +|..+|++....-.+.+...|..++..+.+.|++++|..
T Consensus 264 al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~ 342 (530)
T 2ooe_A 264 CLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHS 342 (530)
T ss_dssp HHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHH
Confidence 88853 4478888888888876 79987 899999998863235568999999999999999999999
Q ss_pred HHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHh
Q 007695 419 NFDYMIRLGHKPD--DRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD-WLGRLQLINEAEQLLGKISE 495 (592)
Q Consensus 419 lf~~m~~~g~~pd--~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~-~~~~~g~~~~A~~l~~~m~~ 495 (592)
+|+++... .|+ ...|...+..+.+.|++++|..+|++..+.. +.+...|..... .+...|++++|..+|+...+
T Consensus 343 ~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~ 419 (530)
T 2ooe_A 343 IYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLK 419 (530)
T ss_dssp HHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Confidence 99999985 343 3578888888899999999999999998753 222333333222 23468999999999999887
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 007695 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKE-QM--GPDDFERIINGLLAGGFLQDAQRVHGLMEAQ 566 (592)
Q Consensus 496 ~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~-~~--~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~ 566 (592)
.... +...|..++..+.+.|+.++|..+|++....+. .| ....|...+......|+.+.+.++++++.+.
T Consensus 420 ~~p~-~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 420 KYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HCCC-CHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6543 789999999999999999999999999988632 22 2347888898889999999999999998864
No 27
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.68 E-value=9.8e-15 Score=145.97 Aligned_cols=251 Identities=11% Similarity=0.069 Sum_probs=175.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 007695 265 DAHAKENCLEDAERILKKMNENGIVPDI--VTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQ 342 (592)
Q Consensus 265 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~ 342 (592)
+-....|++..|+..++..... .|+. .....+.++|...|+++.|...++.. -+|+..++..+...+...++
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCc
Confidence 4455677888888777665443 2332 34455677888888888887766442 25667777777788888888
Q ss_pred chHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007695 343 PKLGMSLVDMMITSGIER-SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFD 421 (592)
Q Consensus 343 ~~~A~~l~~~m~~~g~~p-~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~ 421 (592)
.++|++.++++...+..| +...+..+...+...|++++|.+.++. +.+..++..++..|.+.|++++|...|+
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 888888888887765434 455666666778888888888888776 4567778888888888888888888888
Q ss_pred HHHHcCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 007695 422 YMIRLGHKPDDRCTA---SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498 (592)
Q Consensus 422 ~m~~~g~~pd~~t~~---~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~ 498 (592)
++.... |+....+ ..+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...++++.....
T Consensus 155 ~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p 231 (291)
T 3mkr_A 155 KMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS 231 (291)
T ss_dssp HHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 887753 4432111 1223334457788888888887765 345677777788888888888888888888777654
Q ss_pred CCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHc
Q 007695 499 APPFKIQVSLCDMYARAGIEKK-ALQALGFLEAK 531 (592)
Q Consensus 499 ~p~~~~~~~Li~~~~~~g~~~~-A~~~~~~m~~~ 531 (592)
. +..++..++..+...|+.++ +.++++++.+.
T Consensus 232 ~-~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 232 G-HPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp T-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 4 67777778878888887765 56777777664
No 28
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.64 E-value=2.6e-11 Score=130.24 Aligned_cols=330 Identities=16% Similarity=0.016 Sum_probs=274.5
Q ss_pred HHHHHHhh-cCCCHhhHHHHHHHHH-----hhCHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHH
Q 007695 210 LLAEWKEL-LQPSRIDWINLLDRLR-----EQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAK----ENCLEDAERI 279 (592)
Q Consensus 210 A~~~~~~~-~~p~~~t~~~lL~~~~-----~~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~----~g~~~~A~~l 279 (592)
++..++.. ...+...+..+-..+. .++...+...++..... -+...+..|...|.. .+++++|.+.
T Consensus 26 ~~~~~~~~a~~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 101 (490)
T 2xm6_A 26 NLEQLKQKAESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ----GYTPAEYVLGLRYMNGEGVPQDYAQAVIW 101 (490)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 34455444 3345555555555553 45678888887777643 456788889999998 8999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCchHHHHHHH
Q 007695 280 LKKMNENGIVPDIVTSTVLVHMYSK----AGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVN----AGQPKLGMSLVD 351 (592)
Q Consensus 280 ~~~m~~~g~~pd~~~~~~Li~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~----~g~~~~A~~l~~ 351 (592)
|++..+.| +...+..|...|.. .+++++|...|++..+.| +...+..+...|.. .+++++|...|+
T Consensus 102 ~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 175 (490)
T 2xm6_A 102 YKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYS 175 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 99999875 77788889999988 889999999999999875 67888899999987 789999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHH
Q 007695 352 MMITSGIERSEEIYLALLRSFAQ----CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQ----AGDPDQARSNFDYM 423 (592)
Q Consensus 352 ~m~~~g~~p~~~t~~~Ll~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~----~g~~~~A~~lf~~m 423 (592)
+..+.| +...+..|...|.. .++.++|...|+.....+ +..++..+...|.. .+++++|...|++.
T Consensus 176 ~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a 249 (490)
T 2xm6_A 176 KAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQS 249 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 999876 78889999999988 899999999999998865 67888889999987 89999999999998
Q ss_pred HHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHH
Q 007695 424 IRLGHKPDDRCTASMIAAYGK----KNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRL-----QLINEAEQLLGKIS 494 (592)
Q Consensus 424 ~~~g~~pd~~t~~~li~a~~~----~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~-----g~~~~A~~l~~~m~ 494 (592)
...| +...+..+-..|.. .++.++|+.+|+...+.| +...+..+...|... +++++|...+++..
T Consensus 250 ~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~ 323 (490)
T 2xm6_A 250 AEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSA 323 (490)
T ss_dssp HTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHH
T ss_pred HHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHH
Confidence 8753 45666667777777 899999999999988764 556777788888887 89999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCC
Q 007695 495 ELGEAPPFKIQVSLCDMYARAG---IEKKALQALGFLEAKKEQMGPDDFERIINGLLA----GGFLQDAQRVHGLMEAQG 567 (592)
Q Consensus 495 ~~g~~p~~~~~~~Li~~~~~~g---~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~----~g~~~~A~~l~~~m~~~g 567 (592)
+.+ +...+..|...|...| +.++|...|++..+.+ ++..+..+...|.. .++.++|++.|++..+.|
T Consensus 324 ~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~ 397 (490)
T 2xm6_A 324 EQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG 397 (490)
T ss_dssp HTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred hcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence 875 5678888888888867 8899999999998863 57788899999998 899999999999999876
No 29
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.64 E-value=7.3e-14 Score=139.62 Aligned_cols=256 Identities=11% Similarity=0.057 Sum_probs=210.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC
Q 007695 299 VHMYSKAGNLDRAKEAFESLRSHGFQPDK--KVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376 (592)
Q Consensus 299 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~--~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g 376 (592)
++-....|++..|+..++..... .|+. .....+.++|...|+++.|+..++. .-+|+..++..+...+...+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 44566789999999999887643 3443 3556778999999999999987654 24567888999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007695 377 DVRGAGQITNIMRIEEFQP-TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLL 455 (592)
Q Consensus 377 ~~~~A~~~~~~m~~~g~~~-~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~ 455 (592)
+.++|.+.++++...+..| +...+..+...|.+.|++++|...|++ ..+...+..+...|.+.|++++|...|
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999998876444 677788888999999999999999997 357888999999999999999999999
Q ss_pred HHHHHCCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 007695 456 LELEKDGFEPGPATY---TVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKK 532 (592)
Q Consensus 456 ~~m~~~g~~p~~~ty---~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~ 532 (592)
+.+.+.. |+...+ ...+..+...|++++|..+|+++.+... .+...++.+..++...|++++|...|+++...
T Consensus 154 ~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~- 229 (291)
T 3mkr_A 154 KKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS-PTLLLLNGQAACHMAQGRWEAAEGVLQEALDK- 229 (291)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 9998753 553211 2233444456899999999999998744 48899999999999999999999999999887
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHH-HHHHHHHHHHCCCCCCH
Q 007695 533 EQMGPDDFERIINGLLAGGFLQD-AQRVHGLMEAQGFAASE 572 (592)
Q Consensus 533 ~~~~~~~~~~li~a~~~~g~~~~-A~~l~~~m~~~g~~pd~ 572 (592)
.+-++.++..++..+...|+.++ +.++++++.+. .|+.
T Consensus 230 ~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~ 268 (291)
T 3mkr_A 230 DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSH 268 (291)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTC
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCC
Confidence 34578899999999999999876 57899988864 6766
No 30
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.62 E-value=2.4e-15 Score=155.37 Aligned_cols=263 Identities=12% Similarity=0.047 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007695 259 DYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYV 338 (592)
Q Consensus 259 ~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~ 338 (592)
+|+.|+.++.+.|++++|.+.|.+. +|..+|..++..+...|++++|...++...+. .+++.+.+.++.+|.
T Consensus 34 vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~ 105 (449)
T 1b89_A 34 VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALA 105 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHH
Confidence 5556666666666666666666432 35556666666666666666666655544442 344555666666666
Q ss_pred HcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007695 339 NAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARS 418 (592)
Q Consensus 339 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~ 418 (592)
+.|++.++.++++ .|+..+|..+...|...|.+++|...|..+ ..|..++.++.+.|++++|.+
T Consensus 106 Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVe 169 (449)
T 1b89_A 106 KTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVD 169 (449)
T ss_dssp ---CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHH
T ss_pred HhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHH
Confidence 6666666655553 245556666666666666666666666654 256666666666666666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 007695 419 NFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498 (592)
Q Consensus 419 lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~ 498 (592)
.+.++ .+..+|..++.+|...|+++.|...... +...+.....++..|.+.|++++|..+++......
T Consensus 170 a~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le- 237 (449)
T 1b89_A 170 GARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE- 237 (449)
T ss_dssp HHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-
T ss_pred HHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-
Confidence 66666 2566666666667766766666433332 22333334456666677777777777776666544
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCC------CHHHHHHHHHHHHhCCCHHHHHH
Q 007695 499 APPFKIQVSLCDMYARAGIEKKALQALGFLEAK-KEQM------GPDDFERIINGLLAGGFLQDAQR 558 (592)
Q Consensus 499 ~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~-~~~~------~~~~~~~li~a~~~~g~~~~A~~ 558 (592)
+-...+|+-|..+|++- ++++..+.++....+ +.++ +...|..+.-.|.+.++++.|..
T Consensus 238 ~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 238 RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 33566666666666654 233333333322211 1111 12346666667777777776655
No 31
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.60 E-value=9e-13 Score=140.29 Aligned_cols=362 Identities=9% Similarity=-0.043 Sum_probs=167.1
Q ss_pred HHHHHHccc-ccCCchhHHHHHHhhc-----------CC-CHhhHHHHHHHH-HhhCHHHHHHHHHHHhhh---C--CCC
Q 007695 194 ITDKILSLE-KEEDPSPLLAEWKELL-----------QP-SRIDWINLLDRL-REQNTQLYFKVAELVLSE---E--SFQ 254 (592)
Q Consensus 194 ~~~~l~~~~-~~g~~~~A~~~~~~~~-----------~p-~~~t~~~lL~~~-~~~~~~~~~~~~~~~~~~---~--~~~ 254 (592)
+++.|..++ ..|+.++|++.|++.. .| ..++|+.+-..+ ..++.+.+...+...+.- . ...
T Consensus 53 ~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~ 132 (472)
T 4g1t_A 53 MCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYR 132 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccc
Confidence 455566666 8999999999997752 12 133444444444 445555555544443321 0 011
Q ss_pred -CCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH---HHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 007695 255 -TNVRDYSKLIDAHAKE--NCLEDAERILKKMNENGIVPDIVTSTVLVHM---YSKAGNLDRAKEAFESLRSHGFQPDKK 328 (592)
Q Consensus 255 -p~~~~y~~Li~~~~~~--g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~---~~~~g~~~~A~~~~~~m~~~g~~pd~~ 328 (592)
....+|+.+..++.+. +++++|...|++..+.... +...+..+..+ +...++.++|++.|++..+.. +.+..
T Consensus 133 ~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~ 210 (472)
T 4g1t_A 133 IESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQY 210 (472)
T ss_dssp CCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHH
T ss_pred hhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchH
Confidence 1233444444444332 3456666666665553211 33333333333 223455555666665555432 33444
Q ss_pred HHHHHHHHHHH----cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007695 329 VYNSMIMAYVN----AGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLV 404 (592)
Q Consensus 329 t~~~li~a~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li 404 (592)
++..+...+.. .+++++|.+++++..... +.+..++..+...|...|++++|...+.+..+.. +.+..++..+.
T Consensus 211 ~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 288 (472)
T 4g1t_A 211 LKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIG 288 (472)
T ss_dssp HHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHH
Confidence 44444443333 234555666666555543 2245555566666666666666666666655543 33455555555
Q ss_pred HHHHHc-------------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 007695 405 EAYGQA-------------------GDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEP 465 (592)
Q Consensus 405 ~~~~~~-------------------g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p 465 (592)
..|... +..+.|...|++.....+. +..++..+...|...|++++|...|++..+....+
T Consensus 289 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~ 367 (472)
T 4g1t_A 289 CCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEFSKELTP 367 (472)
T ss_dssp HHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCC
Confidence 555332 1234455555554443221 23344455555666666666666666555532222
Q ss_pred CH--HHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 007695 466 GP--ATYTVLVD-WLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFER 542 (592)
Q Consensus 466 ~~--~ty~~li~-~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 542 (592)
.. ..+..+.. .....|+.++|...|.+..+... +..... +....+.++++..... .+.++.+|..
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~--~~~~~~---------~~~~~l~~~~~~~l~~-~p~~~~~~~~ 435 (472)
T 4g1t_A 368 VAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQ--KSREKE---------KMKDKLQKIAKMRLSK-NGADSEALHV 435 (472)
T ss_dssp HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCC--CCHHHH---------HHHHHHHHHHHHHHHH-CC-CTTHHHH
T ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc--ccHHHH---------HHHHHHHHHHHHHHHh-CCCCHHHHHH
Confidence 11 11111111 12345556666666665555322 211111 1112223333333333 2446778999
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC-CCCCH
Q 007695 543 IINGLLAGGFLQDAQRVHGLMEAQG-FAASE 572 (592)
Q Consensus 543 li~a~~~~g~~~~A~~l~~~m~~~g-~~pd~ 572 (592)
+...|...|++++|++.|++.++.| ..|+.
T Consensus 436 LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a 466 (472)
T 4g1t_A 436 LAFLQELNEKMQQADEDSERGLESGSLIPSA 466 (472)
T ss_dssp HHHHHHHHHHCC-------------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcH
Confidence 9999999999999999999998764 33443
No 32
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.59 E-value=6.6e-15 Score=152.16 Aligned_cols=250 Identities=10% Similarity=0.022 Sum_probs=112.7
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHH
Q 007695 269 KENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMS 348 (592)
Q Consensus 269 ~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~ 348 (592)
+.|++++|.++++++. +..+|..|..++.+.|++++|.+.|.+. +|..+|..++.++...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 6678999999999983 3358999999999999999999999653 577899999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 007695 349 LVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGH 428 (592)
Q Consensus 349 l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~ 428 (592)
+++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.++..|...|.+++|...|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 88777763 4567889999999999999999998885 477789999999999999999999999977
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 007695 429 KPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSL 508 (592)
Q Consensus 429 ~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~L 508 (592)
..|..++.++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|...... +..++.-...+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHH
Confidence 36999999999999999999999988 3789999999999999999999655443 23355556679
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC--CCHHHHHHHH
Q 007695 509 CDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAG--GFLQDAQRVH 560 (592)
Q Consensus 509 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~--g~~~~A~~l~ 560 (592)
+..|.+.|++++|..+++...... +-....|+-|..+|++- ++..+.++.|
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~ 266 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELF 266 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 999999999999999999887653 44566788777777755 3444444433
No 33
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.59 E-value=5.2e-13 Score=129.14 Aligned_cols=224 Identities=9% Similarity=-0.100 Sum_probs=131.7
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--CCC----HHHHHH
Q 007695 329 VYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF--QPT----LESCTL 402 (592)
Q Consensus 329 t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~--~~~----~~~~~~ 402 (592)
.|..+...+...|++++|..+|++..+.. .+..++..+..+|...|++++|...+........ .++ ..++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 44444455555555555555555554443 3445555555555555555555555555443320 011 355556
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 007695 403 LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQL 482 (592)
Q Consensus 403 Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~ 482 (592)
+...|...|++++|...|++..... |+. ..+...|++++|...+..+.... +.+...+..+...+...|+
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcC
Confidence 6666666666666666666665532 221 23445566666666666665532 2234556666666777777
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 007695 483 INEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGL 562 (592)
Q Consensus 483 ~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~ 562 (592)
+++|...++++.+.... +..++..+...|...|++++|...|+...... +.++..|..+...|...|++++|.+.|++
T Consensus 155 ~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 77777777776665433 56677777777777777777777777776652 33566677777777777777777777777
Q ss_pred HHHC
Q 007695 563 MEAQ 566 (592)
Q Consensus 563 m~~~ 566 (592)
..+.
T Consensus 233 a~~~ 236 (258)
T 3uq3_A 233 ARTK 236 (258)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6654
No 34
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.58 E-value=2.4e-11 Score=131.86 Aligned_cols=366 Identities=9% Similarity=0.014 Sum_probs=260.6
Q ss_pred HHHHHHcccccCCchhHHHHHHhhc--CC-CHhhHHHHHHHH-HhhCHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH-H
Q 007695 194 ITDKILSLEKEEDPSPLLAEWKELL--QP-SRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAH-A 268 (592)
Q Consensus 194 ~~~~l~~~~~~g~~~~A~~~~~~~~--~p-~~~t~~~lL~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~-~ 268 (592)
....++.+.+.|++++|+.+|++++ .| +...|...+... ..++.+.+..+++..+.. .|++..|...+... .
T Consensus 15 ~w~~l~~~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~---~p~~~lw~~~~~~~~~ 91 (530)
T 2ooe_A 15 AWSILIREAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK---VLHIDLWKCYLSYVRE 91 (530)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT---CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCChHHHHHHHHHHHH
Confidence 3344444447899999999999984 35 455577777766 667888899988888754 46877777777533 4
Q ss_pred HcCCHHHHHH----HHHHHHH-CCCCC-CHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007695 269 KENCLEDAER----ILKKMNE-NGIVP-DIVTSTVLVHMYSK---------AGNLDRAKEAFESLRSHGFQPDKKVYNSM 333 (592)
Q Consensus 269 ~~g~~~~A~~----l~~~m~~-~g~~p-d~~~~~~Li~~~~~---------~g~~~~A~~~~~~m~~~g~~pd~~t~~~l 333 (592)
..|+++.|.+ +|+.... .|..| +...|...+..... .|+++.|..+|++..+....+....|...
T Consensus 92 ~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~ 171 (530)
T 2ooe_A 92 TKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDY 171 (530)
T ss_dssp HTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHH
T ss_pred HccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHH
Confidence 5677777665 7777654 35444 56778887776655 78899999999999873111112444433
Q ss_pred HHHH-------------HHcCCchHHHHHHHHHH------HCC---CCCC--------HHHHHHHHHHHHhC----CCH-
Q 007695 334 IMAY-------------VNAGQPKLGMSLVDMMI------TSG---IERS--------EEIYLALLRSFAQC----GDV- 378 (592)
Q Consensus 334 i~a~-------------~~~g~~~~A~~l~~~m~------~~g---~~p~--------~~t~~~Ll~~~~~~----g~~- 378 (592)
.... .+.+++..|..++.+.. +.. ++|+ ...|...+...... ++.
T Consensus 172 ~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~ 251 (530)
T 2ooe_A 172 NKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQT 251 (530)
T ss_dssp HHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSH
T ss_pred HHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcch
Confidence 3211 12345667777766532 211 2443 24555555443332 232
Q ss_pred ---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007695 379 ---RGAGQITNIMRIEEFQPTLESCTLLVEAYGQ-------AGDPD-------QARSNFDYMIRLGHKPDDRCTASMIAA 441 (592)
Q Consensus 379 ---~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~-------~g~~~-------~A~~lf~~m~~~g~~pd~~t~~~li~a 441 (592)
..+..+|++..... +.+...|..++..+.+ .|+++ +|..+|++....-.+-+...|..++..
T Consensus 252 ~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~ 330 (530)
T 2ooe_A 252 LITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADY 330 (530)
T ss_dssp HHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 46778898888764 5678899999988886 79987 899999998862122357788889999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCC-H-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHHcCCH
Q 007695 442 YGKKNLLDKALNLLLELEKDGFEPG-P-ATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDM-YARAGIE 518 (592)
Q Consensus 442 ~~~~g~~~~A~~l~~~m~~~g~~p~-~-~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~-~~~~g~~ 518 (592)
+.+.|++++|..+|+++.+. .|+ . ..|..++..+.+.|++++|..+|++..+.... +...|...+.. +...|+.
T Consensus 331 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~ 407 (530)
T 2ooe_A 331 EESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDK 407 (530)
T ss_dssp HHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCH
T ss_pred HHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCCh
Confidence 99999999999999999884 454 2 57888888899999999999999999876432 33444333322 3468999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 007695 519 KKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQG 567 (592)
Q Consensus 519 ~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~g 567 (592)
++|..+|+...+.. +-++..|..++..+.+.|+.++|..+|++....+
T Consensus 408 ~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 408 SVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 99999999988763 4468899999999999999999999999999874
No 35
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.57 E-value=8e-13 Score=127.84 Aligned_cols=223 Identities=14% Similarity=0.084 Sum_probs=113.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCC--CCC----HHHHHHH
Q 007695 295 STVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGI--ERS----EEIYLAL 368 (592)
Q Consensus 295 ~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~--~p~----~~t~~~L 368 (592)
|..+...+...|++++|...|++..+.. .+..+|..+..+|...|++++|...+.+..+... .++ ..++..+
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 3334444444444444444444444333 3334444444444444444444444444433210 011 2444445
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 007695 369 LRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLL 448 (592)
Q Consensus 369 l~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~ 448 (592)
...|...|++++|...++...... |+. ..+.+.|++++|...++.+....+ .+...+..+...|...|++
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNP-EKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHhcCH
Confidence 555555555555555555544432 221 234444555666666655555321 1334455555556666666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007695 449 DKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFL 528 (592)
Q Consensus 449 ~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m 528 (592)
++|...|++..+.. +.+..++..+..++...|++++|...+++..+.... +...+..+...|...|++++|...+++.
T Consensus 156 ~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 156 PNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 66666666655432 224555666666666666666666666666655433 4666666677777777777777776665
Q ss_pred HHc
Q 007695 529 EAK 531 (592)
Q Consensus 529 ~~~ 531 (592)
.+.
T Consensus 234 ~~~ 236 (258)
T 3uq3_A 234 RTK 236 (258)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
No 36
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.54 E-value=1.9e-10 Score=131.81 Aligned_cols=314 Identities=12% Similarity=0.050 Sum_probs=245.3
Q ss_pred HHccc-ccCCchhHHHHHHhhcCCCHhhHHHHHHHHHhhCHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 007695 198 ILSLE-KEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276 (592)
Q Consensus 198 l~~~~-~~g~~~~A~~~~~~~~~p~~~t~~~lL~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A 276 (592)
+..++ ..|.+++|..+|++...+ ....+.++. ..++++.+.+.+... -+..+|..+..++.+.|++++|
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~~-~~A~~VLie--~i~nldrAiE~Aerv-------n~p~vWsqLAKAql~~G~~kEA 1124 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDVN-TSAVQVLIE--HIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEA 1124 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCCH-HHHHHHHHH--HHhhHHHHHHHHHhc-------CCHHHHHHHHHHHHhCCCHHHH
Confidence 55666 899999999999997532 222344444 345566667666543 3466889999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHC
Q 007695 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356 (592)
Q Consensus 277 ~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~ 356 (592)
.+.|.+. -|...|..++.+|.+.|++++|.+.|....+.. ++....+.++.+|++.+++++...+. .
T Consensus 1125 IdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~- 1191 (1630)
T 1xi4_A 1125 IDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N- 1191 (1630)
T ss_pred HHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h-
Confidence 9999664 388889999999999999999999999887653 44444556999999999988644442 2
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 007695 357 GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTA 436 (592)
Q Consensus 357 g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~ 436 (592)
.++...|..+...|...|++++|..+|... ..|..+..+|.+.|++++|.+.+++. .+..+|.
T Consensus 1192 --~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWk 1254 (1630)
T 1xi4_A 1192 --GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWK 1254 (1630)
T ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHH
Confidence 346677888999999999999999999984 48999999999999999999999977 4678999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC
Q 007695 437 SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516 (592)
Q Consensus 437 ~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g 516 (592)
.+-.+|...|++..|...... +..++..+..++..|.+.|.+++|..+++...... +-+...|+-|..+|++.
T Consensus 1255 ev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy- 1327 (1630)
T 1xi4_A 1255 EVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF- 1327 (1630)
T ss_pred HHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhC-
Confidence 999999999999999876654 34567788899999999999999999998887655 33667888888888875
Q ss_pred CHHHHHHHHHHHHHcCCCC-------CHHHHHHHHHHHHhCCCHHHHHH
Q 007695 517 IEKKALQALGFLEAKKEQM-------GPDDFERIINGLLAGGFLQDAQR 558 (592)
Q Consensus 517 ~~~~A~~~~~~m~~~~~~~-------~~~~~~~li~a~~~~g~~~~A~~ 558 (592)
+.++..+.++....+...| +...|..++-.|.+.|+++.|+.
T Consensus 1328 ~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1328 KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred CHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 3344333333333332222 34579999999999999999983
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.53 E-value=1.6e-12 Score=123.76 Aligned_cols=199 Identities=18% Similarity=0.056 Sum_probs=123.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007695 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333 (592)
Q Consensus 254 ~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l 333 (592)
+++...+..+...+.+.|++++|...|++..+... .+...+..+..++.+.|++++|...|++..+.. +.+..++..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENP-QDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 34556667777777777777777777777776532 266677777777777777777777777777653 4456677777
Q ss_pred HHHHHHc-----------CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 007695 334 IMAYVNA-----------GQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTL 402 (592)
Q Consensus 334 i~a~~~~-----------g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 402 (592)
..++... |++++|+..|++..+... -+...+..+..+|...|++++|...|++..+.. .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 7777777 777777777766666432 245666666666667777777777776666665 55666666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007695 403 LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLEL 458 (592)
Q Consensus 403 Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m 458 (592)
+..+|...|++++|...|++..+..+. +...+..+..++...|++++|+..|++.
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 666666777777777777666664332 4555566666666666666666666554
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.52 E-value=1.6e-12 Score=123.80 Aligned_cols=113 Identities=21% Similarity=0.151 Sum_probs=45.8
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 007695 446 NLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQAL 525 (592)
Q Consensus 446 g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~ 525 (592)
|++++|+..|++..+.. +-+...+..+..++...|++++|...|++..+.. .+...+..+..+|...|++++|...|
T Consensus 98 g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~ 174 (217)
T 2pl2_A 98 GYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQY 174 (217)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 44444444444444321 1123344444444444555555555555444444 24444555555555555555555555
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 007695 526 GFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGL 562 (592)
Q Consensus 526 ~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~ 562 (592)
++..+.. +-++..+..+...+...|++++|+..|++
T Consensus 175 ~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 175 AKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHS-TTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 5544431 22344444455555555555555554444
No 39
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.51 E-value=1e-11 Score=117.31 Aligned_cols=202 Identities=12% Similarity=-0.026 Sum_probs=136.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007695 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335 (592)
Q Consensus 256 ~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~ 335 (592)
+...+..+...+...|++++|.+.|+.+.+.. +.+...+..+...|...|++++|...|+++.+.. +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 34556777777777788888888777777653 2356677777777777777777777777776543 445667777777
Q ss_pred HHHHc-CCchHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 007695 336 AYVNA-GQPKLGMSLVDMMITSGIERS-EEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDP 413 (592)
Q Consensus 336 a~~~~-g~~~~A~~l~~~m~~~g~~p~-~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~ 413 (592)
.|... |++++|...++++.+.+..|+ ..++..+..++...|++++|...+..+.... +.+...+..+...|.+.|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 77777 777777777777776322222 5566667777777777777777777776654 44566677777777777777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007695 414 DQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEK 460 (592)
Q Consensus 414 ~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~ 460 (592)
++|...|++.....+..+...+..+...+...|+.+.|..+++.+.+
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 77777777766643313555566666666667777777777766654
No 40
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.51 E-value=8.1e-12 Score=120.81 Aligned_cols=200 Identities=13% Similarity=0.007 Sum_probs=137.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007695 257 VRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336 (592)
Q Consensus 257 ~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a 336 (592)
...|..+...+...|++++|...|+++.+.. +.+...+..+...|...|++++|.+.|+++.+.. +.+..++..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 4456777777778888888888888777653 2356777777777888888888888887776653 3466677777777
Q ss_pred HHHcCCchHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 007695 337 YVNAGQPKLGMSLVDMMITSGIER-SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQ 415 (592)
Q Consensus 337 ~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~ 415 (592)
|...|++++|..+++++...+..| +...+..+...|...|++++|...+....... +.+..++..+...|...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 777777777777777776632233 45566666777777777777777777776654 4456666777777777777777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007695 416 ARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEK 460 (592)
Q Consensus 416 A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~ 460 (592)
|...|+++..... .+...+..+...|...|+.++|..+++.+.+
T Consensus 194 A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 194 ARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 7777777665432 3455566666666677777777777776655
No 41
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.50 E-value=1.4e-11 Score=119.16 Aligned_cols=198 Identities=12% Similarity=0.057 Sum_probs=97.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 007695 365 YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGK 444 (592)
Q Consensus 365 ~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~ 444 (592)
+..+...+...|++++|...++.+.... +.+..++..+...|...|++++|...|+++..... .+...+..+...|..
T Consensus 40 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~ 117 (252)
T 2ho1_A 40 YIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGFLYE 117 (252)
T ss_dssp HHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHH
Confidence 3444444444444444444444444332 23344444444445555555555555544444322 133444444455555
Q ss_pred cCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007695 445 KNLLDKALNLLLELEKDGFEP-GPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQ 523 (592)
Q Consensus 445 ~g~~~~A~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~ 523 (592)
.|++++|..+|+++...+..| +...+..+..++...|++++|...++++.+.... +...+..+...|...|++++|..
T Consensus 118 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~ 196 (252)
T 2ho1_A 118 QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVPARQ 196 (252)
T ss_dssp TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHHHHH
Confidence 555555555555544422222 2344444555555555555555555555544322 45555555556666666666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 007695 524 ALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQ 566 (592)
Q Consensus 524 ~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~ 566 (592)
.++.+... .+.+...+..+...+...|+.++|.++++++.+.
T Consensus 197 ~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 197 YYDLFAQG-GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHTT-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 66555543 2234445555555566666666666666665543
No 42
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.50 E-value=6.2e-11 Score=116.46 Aligned_cols=227 Identities=13% Similarity=-0.038 Sum_probs=114.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCchHHHHHHHHHHHCCCCCCHHHHH
Q 007695 291 DIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVN----AGQPKLGMSLVDMMITSGIERSEEIYL 366 (592)
Q Consensus 291 d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~ 366 (592)
+..++..+...|...|++++|...|++..+. .+..++..+...|.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 3444555555555555555555555555542 234445555555555 555555555555554443 444444
Q ss_pred HHHHHHHh----CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007695 367 ALLRSFAQ----CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAY 442 (592)
Q Consensus 367 ~Ll~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~ 442 (592)
.+...|.. .+++++|...|+.....+ +..++..+...|... .
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~-------------------------------~ 124 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDG-------------------------------K 124 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHC-------------------------------S
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcC-------------------------------C
Confidence 44444544 455555555554444432 344444444444440 0
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH----
Q 007695 443 GKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR----LQLINEAEQLLGKISELGEAPPFKIQVSLCDMYAR---- 514 (592)
Q Consensus 443 ~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~---- 514 (592)
...+++++|+..|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+...|..
T Consensus 125 ~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~ 198 (273)
T 1ouv_A 125 VVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGA 198 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSS
T ss_pred CcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCC
Confidence 00455555555555544433 33344444444444 555555555555555442 34455555555655
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHC
Q 007695 515 AGIEKKALQALGFLEAKKEQMGPDDFERIINGLLA----GGFLQDAQRVHGLMEAQ 566 (592)
Q Consensus 515 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~----~g~~~~A~~l~~~m~~~ 566 (592)
.+++++|...|++..+.+ ++..+..+...|.. .+++++|++.|++..+.
T Consensus 199 ~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 199 TKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 666666666666555542 14445555556655 56666666666666554
No 43
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.49 E-value=2.9e-11 Score=114.08 Aligned_cols=201 Identities=14% Similarity=-0.022 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007695 362 EEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAA 441 (592)
Q Consensus 362 ~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a 441 (592)
..++..+...+...|++++|...++.+.... +.+..++..+...|...|++++|...|++...... .+..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHHH
Confidence 3444455555555555555555555555443 33445555555555555555555555555554322 244455555555
Q ss_pred HHhc-CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHH
Q 007695 442 YGKK-NLLDKALNLLLELEKDGFEPG-PATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEK 519 (592)
Q Consensus 442 ~~~~-g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~ 519 (592)
|... |++++|...++++.+.+..|+ ...+..+..++...|++++|...++++.+.... +...+..+...|...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCHH
Confidence 5566 666666666665554222222 345555555666666666666666665554332 4556666666666666666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 007695 520 KALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEA 565 (592)
Q Consensus 520 ~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~ 565 (592)
+|...++.+.......++..+..+...+...|+.+.|..+++.+..
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 6666666665542213455555555666666666666666666654
No 44
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.49 E-value=8.1e-11 Score=125.07 Aligned_cols=306 Identities=14% Similarity=-0.009 Sum_probs=175.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----C
Q 007695 256 NVRDYSKLIDAHAKENCLEDAERILKKMNEN--------GIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSH-----G 322 (592)
Q Consensus 256 ~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~--------g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~-----g 322 (592)
....||.|...+...|++++|++.|++..+. .-+....+|+.+..+|...|++++|...|++..+. +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3445777777777777777777777665431 11223556777777777777777777777665431 0
Q ss_pred --CCCCHHHHHHHHHHHHHc--CCchHHHHHHHHHHHCCCCCCHHHHHHHHHH---HHhCCCHHHHHHHHHHHHHcCCCC
Q 007695 323 --FQPDKKVYNSMIMAYVNA--GQPKLGMSLVDMMITSGIERSEEIYLALLRS---FAQCGDVRGAGQITNIMRIEEFQP 395 (592)
Q Consensus 323 --~~pd~~t~~~li~a~~~~--g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~---~~~~g~~~~A~~~~~~m~~~g~~~ 395 (592)
......+++.+..++... +++++|+..|++..+.... +...+..+..+ +...++.++|.+.+++..... +.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~ 207 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PD 207 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SS
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Cc
Confidence 011344555555555443 3566777777777664321 34444444333 334556666676666666554 44
Q ss_pred CHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 007695 396 TLESCTLLVEAYGQA----GDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYT 471 (592)
Q Consensus 396 ~~~~~~~Li~~~~~~----g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~ 471 (592)
+..++..+...+... |++++|...+++.....+ .+...+..+...|...|++++|...|.+..+.. +-+..++.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHH
Confidence 555555555444443 455667777776665433 245566667777777777777777777766532 22344444
Q ss_pred HHHHHHHH-------------------cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 007695 472 VLVDWLGR-------------------LQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKK 532 (592)
Q Consensus 472 ~li~~~~~-------------------~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~ 532 (592)
.+..+|.. .+..+.|...++...+.... +..++..+...|...|++++|...|++.....
T Consensus 286 ~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~ 364 (472)
T 4g1t_A 286 QIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEFSKE 364 (472)
T ss_dssp HHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcC
Confidence 44444322 12345666667666655433 44566777778888888888888888777653
Q ss_pred CCCCHH--HHHHHHH-HHHhCCCHHHHHHHHHHHHHC
Q 007695 533 EQMGPD--DFERIIN-GLLAGGFLQDAQRVHGLMEAQ 566 (592)
Q Consensus 533 ~~~~~~--~~~~li~-a~~~~g~~~~A~~l~~~m~~~ 566 (592)
..+... .+..+.. .+.+.|++++|++.|++....
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i 401 (472)
T 4g1t_A 365 LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI 401 (472)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 322111 1222322 234667788888887776653
No 45
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.48 E-value=1.1e-10 Score=114.66 Aligned_cols=225 Identities=14% Similarity=0.064 Sum_probs=186.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHH
Q 007695 255 TNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSK----AGNLDRAKEAFESLRSHGFQPDKKVY 330 (592)
Q Consensus 255 p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~t~ 330 (592)
-+..++..+...+...|++++|.+.|++..+. -+...+..+...|.. .+++++|...|++..+.+ +..++
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 36678888999999999999999999999984 367788889999999 999999999999999875 78899
Q ss_pred HHHHHHHHH----cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 007695 331 NSMIMAYVN----AGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ----CGDVRGAGQITNIMRIEEFQPTLESCTL 402 (592)
Q Consensus 331 ~~li~a~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 402 (592)
..+...|.. .+++++|+..|++..+.+ +..++..+...|.. .+++++|...|+...+.+ +..++..
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 151 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI 151 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHH
Confidence 999999999 999999999999999876 78899999999999 999999999999998875 6677888
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007695 403 LVEAYGQ----AGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGK----KNLLDKALNLLLELEKDGFEPGPATYTVLV 474 (592)
Q Consensus 403 Li~~~~~----~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~----~g~~~~A~~l~~~m~~~g~~p~~~ty~~li 474 (592)
+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+.
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~ 225 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLG 225 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence 8888888 888888888888887753 45666667777777 788888888887777653 245556666
Q ss_pred HHHHH----cCCHHHHHHHHHHHHhcC
Q 007695 475 DWLGR----LQLINEAEQLLGKISELG 497 (592)
Q Consensus 475 ~~~~~----~g~~~~A~~l~~~m~~~g 497 (592)
..|.. .+++++|...+++..+.+
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 66666 667777777777666654
No 46
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.48 E-value=7.4e-12 Score=122.48 Aligned_cols=28 Identities=18% Similarity=-0.045 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 007695 504 IQVSLCDMYARAGIEKKALQALGFLEAK 531 (592)
Q Consensus 504 ~~~~Li~~~~~~g~~~~A~~~~~~m~~~ 531 (592)
+|..+...|...|++++|...|++..+.
T Consensus 223 ~~~~l~~~~~~~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 223 ANEYIAYYYTINRDKVKADAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 4444555555555555555555555443
No 47
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.48 E-value=1.2e-11 Score=128.28 Aligned_cols=249 Identities=11% Similarity=0.058 Sum_probs=187.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007695 257 VRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN-LDRAKEAFESLRSHGFQPDKKVYNSMIM 335 (592)
Q Consensus 257 ~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~-~~~A~~~~~~m~~~g~~pd~~t~~~li~ 335 (592)
...|+.+..++.+.|++++|+..|+++.+.... +...|+.+..++...|+ +++|+..|++..+.. +-+..+|+.+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 345777777888889999999999998886433 67888899999999996 999999999988764 557888999999
Q ss_pred HHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-cCCHH
Q 007695 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQ-AGDPD 414 (592)
Q Consensus 336 a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~-~g~~~ 414 (592)
++...|++++|+..|+++++.... +...|..+..++.+.|++++|...++++.... +.+..+|+.+..+|.+ .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence 999999999999999999886533 78888889999999999999999999988876 5678888888888888 56656
Q ss_pred HH-----HHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC------
Q 007695 415 QA-----RSNFDYMIRLGHKPDDRCTASMIAAYGKKN--LLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQ------ 481 (592)
Q Consensus 415 ~A-----~~lf~~m~~~g~~pd~~t~~~li~a~~~~g--~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g------ 481 (592)
+| +..|++.....+. +...|+.+...+...| ++++|+..+..+ + ....+...+..+..+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~-~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q-PSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T-TTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-c-cCCCCHHHHHHHHHHHHHHhcccccc
Confidence 66 4777777775443 5667777777777777 577888777776 2 22344566777777776653
Q ss_pred ---CHHHHHHHHHHH-HhcCCCCCHHHHHHHHHHHH
Q 007695 482 ---LINEAEQLLGKI-SELGEAPPFKIQVSLCDMYA 513 (592)
Q Consensus 482 ---~~~~A~~l~~~m-~~~g~~p~~~~~~~Li~~~~ 513 (592)
.+++|..+++++ .+.... ....|..+...+.
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~-r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTI-RKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGG-GHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCch-hHHHHHHHHHHHH
Confidence 246777777777 443322 3445555544443
No 48
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.48 E-value=1e-12 Score=128.72 Aligned_cols=250 Identities=13% Similarity=0.016 Sum_probs=122.5
Q ss_pred HcCCHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchH
Q 007695 269 KENCLEDAERILKKMNENGIV---PDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKL 345 (592)
Q Consensus 269 ~~g~~~~A~~l~~~m~~~g~~---pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~ 345 (592)
..|++++|...|+++.+.... .+..+|..+...|...|++++|...|+++.+.. +.+..+|..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 345666666666666654211 134455566666666666666666666665543 3345566666666666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007695 346 GMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR 425 (592)
Q Consensus 346 A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~ 425 (592)
|...|++..+.. +.+..++..+..+|.+.|++++|...++.+.... |+.......+..+...|++++|...|++...
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 666666665542 1244555555555556666666666665555542 2222222333333444555555555554444
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHH
Q 007695 426 LGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQ 505 (592)
Q Consensus 426 ~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~ 505 (592)
... ++...+. ++..+...++.++|+..+....... |+. ...+..++
T Consensus 173 ~~~-~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~--~~~------------------------------~~~~~~~~ 218 (275)
T 1xnf_A 173 KSD-KEQWGWN-IVEFYLGNISEQTLMERLKADATDN--TSL------------------------------AEHLSETN 218 (275)
T ss_dssp HSC-CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSH--HHH------------------------------HHHHHHHH
T ss_pred cCC-cchHHHH-HHHHHHHhcCHHHHHHHHHHHhccc--ccc------------------------------cccccHHH
Confidence 321 1222222 3444444455555555554443321 100 00013455
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 007695 506 VSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVH 560 (592)
Q Consensus 506 ~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~ 560 (592)
..+...|...|++++|...|++....+ | ..+.....++...|++++|++.+
T Consensus 219 ~~la~~~~~~g~~~~A~~~~~~al~~~--p--~~~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 219 FYLGKYYLSLGDLDSATALFKLAVANN--V--HNFVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC--C--TTCHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCC--c--hhHHHHHHHHHHHHHHHhhHHHH
Confidence 555566666666666666666555432 1 11223344445555555555444
No 49
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.48 E-value=1.1e-11 Score=121.33 Aligned_cols=250 Identities=13% Similarity=-0.010 Sum_probs=195.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHH
Q 007695 258 RDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQP--DKKVYNSMIM 335 (592)
Q Consensus 258 ~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p--d~~t~~~li~ 335 (592)
..+......+...|++++|...|++..+.... +...+..+..+|...|++++|...|++..+.+-.+ ...+|..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 34556778889999999999999999886432 55578889999999999999999999998743122 2345889999
Q ss_pred HHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 007695 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQ 415 (592)
Q Consensus 336 a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~ 415 (592)
.|...|++++|+..|++..+... .+..++..+...|...|++++|...+++..... +.+..++..+...+...+++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988643 367899999999999999999999999988764 5567888888834445569999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHC-CCCCC------HHHHHHHHHHHHHcCCHHH
Q 007695 416 ARSNFDYMIRLGHKPDDRCTASMIAAYGKKNL---LDKALNLLLELEKD-GFEPG------PATYTVLVDWLGRLQLINE 485 (592)
Q Consensus 416 A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~---~~~A~~l~~~m~~~-g~~p~------~~ty~~li~~~~~~g~~~~ 485 (592)
|...|++.....+. +...+..+..++...|+ +++|...|++..+. .-.|+ ...|..+...|...|++++
T Consensus 161 A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 161 ADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 99999999885432 46777778888888887 78888888887654 11233 2577888899999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 007695 486 AEQLLGKISELGEAPPFKIQVSLCDMY 512 (592)
Q Consensus 486 A~~l~~~m~~~g~~p~~~~~~~Li~~~ 512 (592)
|...++++.+.... +......+....
T Consensus 240 A~~~~~~al~~~p~-~~~a~~~l~~~~ 265 (272)
T 3u4t_A 240 ADAAWKNILALDPT-NKKAIDGLKMKL 265 (272)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHC---
T ss_pred HHHHHHHHHhcCcc-HHHHHHHhhhhh
Confidence 99999999887544 555555554433
No 50
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.48 E-value=2.3e-10 Score=131.29 Aligned_cols=315 Identities=15% Similarity=0.133 Sum_probs=239.5
Q ss_pred HcccccCCchhHHHHHHhhc-CCC-----HhhHHHHHHHHHhhCHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCC
Q 007695 199 LSLEKEEDPSPLLAEWKELL-QPS-----RIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENC 272 (592)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~~~-~p~-----~~t~~~lL~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~ 272 (592)
..+...|.+.+|+++++++. .|+ ...-+.++.+....+.......+...- .....-+...+...|.
T Consensus 993 Kaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd--------~~d~~eIA~Iai~lgl 1064 (1630)
T 1xi4_A 993 KAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLD--------NYDAPDIANIAISNEL 1064 (1630)
T ss_pred HHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhh--------hccHHHHHHHHHhCCC
Confidence 34448999999999999983 444 233444444433333333333333221 1123457788889999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHH
Q 007695 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDM 352 (592)
Q Consensus 273 ~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~ 352 (592)
+++|..+|++... .....+.++ -..+++++|.++.++.. +..+|..+..++...|++++|...|.+
T Consensus 1065 yEEAf~IYkKa~~-----~~~A~~VLi---e~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYiK 1130 (1630)
T 1xi4_A 1065 FEEAFAIFRKFDV-----NTSAVQVLI---EHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIK 1130 (1630)
T ss_pred HHHHHHHHHHcCC-----HHHHHHHHH---HHHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 9999999999631 222233333 27889999999998663 577999999999999999999999966
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 007695 353 MITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432 (592)
Q Consensus 353 m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~ 432 (592)
. -|...|..++.+|.+.|++++|.+.|....+.. ++....+.++.+|++.+++++...+. . .++.
T Consensus 1131 A------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ 1195 (1630)
T 1xi4_A 1131 A------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNN 1195 (1630)
T ss_pred c------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCH
Confidence 4 378899999999999999999999999877764 34344446999999999988644432 2 2566
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 007695 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512 (592)
Q Consensus 433 ~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~ 512 (592)
..|..+...|...|++++|..+|... ..|..+..+|.+.|+++.|.+.+++.. +..+|..+..+|
T Consensus 1196 ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWkev~~ac 1260 (1630)
T 1xi4_A 1196 AHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFAC 1260 (1630)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHHHHHHH
Confidence 77888999999999999999999974 489999999999999999999998772 678999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH
Q 007695 513 ARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASE 572 (592)
Q Consensus 513 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~g~~pd~ 572 (592)
...|++..|...... ...+++.+..++..|.+.|.+++|+.+++... |+.|..
T Consensus 1261 ve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL--~LeraH 1313 (1630)
T 1xi4_A 1261 VDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAAL--GLERAH 1313 (1630)
T ss_pred hhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh--ccChhH
Confidence 999999999887553 34467778899999999999999999997775 344444
No 51
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.47 E-value=4.5e-12 Score=121.57 Aligned_cols=201 Identities=14% Similarity=0.091 Sum_probs=97.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007695 255 TNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334 (592)
Q Consensus 255 p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li 334 (592)
.....|..+...+...|++++|...|+++.+.. +.+...+..+...|...|++++|...|+++.+.. +.+..++..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 344445556666666666666666666665542 2245556666666666666666666666655442 33455555555
Q ss_pred HHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 007695 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPD 414 (592)
Q Consensus 335 ~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~ 414 (592)
..|...|++++|..+++++.+.. +.+...+..+...+.+.|++++|...++++.... +.+...+..+...|.+.|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHH
Confidence 66666666666666666555542 2244555555555555555555555555555443 334455555555555555555
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007695 415 QARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEK 460 (592)
Q Consensus 415 ~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~ 460 (592)
+|...|++...... .+..++..+..+|...|++++|...+++..+
T Consensus 177 ~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 177 EALSQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 55555555544322 1344444455555555555555555555444
No 52
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.46 E-value=6.9e-12 Score=120.23 Aligned_cols=195 Identities=12% Similarity=0.025 Sum_probs=73.3
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 007695 331 NSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQA 410 (592)
Q Consensus 331 ~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~ 410 (592)
..+...+...|++++|..+|+++.+.. +.+..++..+...|...|++++|...++...... +.+..++..+...|...
T Consensus 27 ~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 104 (243)
T 2q7f_A 27 GQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVK 104 (243)
T ss_dssp ---------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHh
Confidence 333333334444444444444433321 1133333444444444444444444444443332 22334444444444444
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 007695 411 GDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490 (592)
Q Consensus 411 g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~ 490 (592)
|++++|...|+++..... .+...+..+...|...|++++|...++++.+.. +.+...+..+...+...|++++|...+
T Consensus 105 ~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 182 (243)
T 2q7f_A 105 EMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQF 182 (243)
T ss_dssp TCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 444444444444443221 123333334444444444444444444433321 122333444444444444444444444
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007695 491 GKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEA 530 (592)
Q Consensus 491 ~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~ 530 (592)
+++...... +..++..+...|...|++++|...++++.+
T Consensus 183 ~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 183 AAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 444433221 344444444444444444444444444444
No 53
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.45 E-value=3e-12 Score=125.30 Aligned_cols=247 Identities=13% Similarity=-0.018 Sum_probs=185.7
Q ss_pred hhCHHHHHHHHHHHhhhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 007695 234 EQNTQLYFKVAELVLSEESFQT--NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRA 311 (592)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~p--~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A 311 (592)
.++.+.+...+...+......+ +..+|..+...+...|++++|...|+++.+... .+..+|..+...|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHHHH
Confidence 4567888888888876532222 466789999999999999999999999988643 3788999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 007695 312 KEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE 391 (592)
Q Consensus 312 ~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~ 391 (592)
...|++..+.. +.+..++..+..+|...|++++|...|+++.+.. |+.......+..+...|++++|...+......
T Consensus 97 ~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 97 YEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 99999998764 4568899999999999999999999999998853 44445555556667789999999999888776
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 007695 392 EFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP---DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPA 468 (592)
Q Consensus 392 g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~p---d~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ 468 (592)
. +++...+. ++..+...++.++|...+.......... +..++..+..+|...|++++|...|++..... |+.
T Consensus 174 ~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~- 248 (275)
T 1xnf_A 174 S-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN- 248 (275)
T ss_dssp S-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT-
T ss_pred C-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh-
Confidence 4 44544444 7777888889999999998886532210 14667777778888888888888888877643 422
Q ss_pred HHHHHHHHHHHcCCHHHHHHHH
Q 007695 469 TYTVLVDWLGRLQLINEAEQLL 490 (592)
Q Consensus 469 ty~~li~~~~~~g~~~~A~~l~ 490 (592)
+.....++...|++++|...+
T Consensus 249 -~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 -FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp -CHHHHHHHHHHHHHHHC----
T ss_pred -HHHHHHHHHHHHHHHhhHHHH
Confidence 222234555666666665554
No 54
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.45 E-value=1.5e-11 Score=127.49 Aligned_cols=249 Identities=11% Similarity=0.027 Sum_probs=202.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-chHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007695 292 IVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQ-PKLGMSLVDMMITSGIERSEEIYLALLR 370 (592)
Q Consensus 292 ~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~-~~~A~~l~~~m~~~g~~p~~~t~~~Ll~ 370 (592)
...|+.+...+.+.|++++|+..|++..+.. +-+..+|+.+..++...|+ +++|+..|++.+..... +...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 4567778888899999999999999998764 5568899999999999997 99999999999987543 7889999999
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHH
Q 007695 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGK-KNLLD 449 (592)
Q Consensus 371 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~-~g~~~ 449 (592)
++...|++++|...|+.+.... +-+..+|..+..++.+.|++++|+..|+++....+. +...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcch
Confidence 9999999999999999999887 678999999999999999999999999999997554 77889989889988 66657
Q ss_pred HH-----HHHHHHHHHCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC------
Q 007695 450 KA-----LNLLLELEKDGFEPGPATYTVLVDWLGRLQ--LINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG------ 516 (592)
Q Consensus 450 ~A-----~~l~~~m~~~g~~p~~~ty~~li~~~~~~g--~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g------ 516 (592)
+| +..|++..+.. +-+...|..+..++...| ++++|...+.++ +.. ..+...+..+..+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcccccc
Confidence 77 47788777642 234677888888888877 588899888887 433 336788888888888874
Q ss_pred ---CHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHH
Q 007695 517 ---IEKKALQALGFL-EAKKEQMGPDDFERIINGLL 548 (592)
Q Consensus 517 ---~~~~A~~~~~~m-~~~~~~~~~~~~~~li~a~~ 548 (592)
..++|..+++++ .+. .+.....|..+...+.
T Consensus 330 ~~~~~~~A~~~~~~l~~~~-DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEK-DTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTT-CGGGHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHh-CchhHHHHHHHHHHHH
Confidence 258899999988 554 3334556776666554
No 55
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.41 E-value=9.3e-12 Score=129.73 Aligned_cols=275 Identities=12% Similarity=-0.015 Sum_probs=139.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CC-CCCHHH
Q 007695 259 DYSKLIDAHAKENCLEDAERILKKMNENGIVPDI----VTSTVLVHMYSKAGNLDRAKEAFESLRSH----GF-QPDKKV 329 (592)
Q Consensus 259 ~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~----~~~~~Li~~~~~~g~~~~A~~~~~~m~~~----g~-~pd~~t 329 (592)
.+..+...+...|++++|...|+++.+.+.. +. ..|..+...|...|++++|...|++..+. +- .....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 3445566677777888888888777765322 22 35667777777777777777777776532 10 112345
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhCCC-----------------HHHHHHHHHH
Q 007695 330 YNSMIMAYVNAGQPKLGMSLVDMMITSG-----IERSEEIYLALLRSFAQCGD-----------------VRGAGQITNI 387 (592)
Q Consensus 330 ~~~li~a~~~~g~~~~A~~l~~~m~~~g-----~~p~~~t~~~Ll~~~~~~g~-----------------~~~A~~~~~~ 387 (592)
+..+...|...|++++|...+.+..... ......++..+...|...|+ +++|...+.+
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 5666666666677777766666654421 01112344455555555555 5555555444
Q ss_pred HHHc----CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007695 388 MRIE----EFQ-PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGH-KPDDRCTASMIAAYGKKNLLDKALNLLLELEKD 461 (592)
Q Consensus 388 m~~~----g~~-~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~-~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~ 461 (592)
.... +-. ....++..+...|...|++++|...|++...... .++..
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------------------------- 260 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRA---------------------------- 260 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH----------------------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcH----------------------------
Confidence 3321 100 0122344444444444444444444444433110 00100
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---
Q 007695 462 GFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA-----PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKE--- 533 (592)
Q Consensus 462 g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~-----p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~--- 533 (592)
.....+..+..+|...|++++|...+++....... ....++..+...|...|++++|...+++......
T Consensus 261 ---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 337 (411)
T 4a1s_A 261 ---AERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG 337 (411)
T ss_dssp ---HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred ---HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 00124444455555555555555555544322110 0134455556666666666666666655443210
Q ss_pred -C-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 007695 534 -Q-MGPDDFERIINGLLAGGFLQDAQRVHGLMEA 565 (592)
Q Consensus 534 -~-~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~ 565 (592)
. ....++..+...|...|++++|.+.|++..+
T Consensus 338 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 338 DRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 0 0122455566666666666666666666554
No 56
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.40 E-value=2.4e-11 Score=125.85 Aligned_cols=276 Identities=12% Similarity=-0.035 Sum_probs=153.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCC
Q 007695 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPD----IVTSTVLVHMYSKAGNLDRAKEAFESLRSH----GFQP 325 (592)
Q Consensus 254 ~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd----~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~----g~~p 325 (592)
......+..+...+.+.|++++|...|+++.+.+.. + ..+|..+...|...|++++|...|++.... +-.|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 445556667777778888888888888887775322 3 346777777888888888888888776432 1111
Q ss_pred -CHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhCCC--------------------HH
Q 007695 326 -DKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGI-ERS----EEIYLALLRSFAQCGD--------------------VR 379 (592)
Q Consensus 326 -d~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~Ll~~~~~~g~--------------------~~ 379 (592)
...++..+...|...|++++|...+.+...... .++ ..++..+...|...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 234566677777777777777777777665321 011 2355566666666666 66
Q ss_pred HHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHH
Q 007695 380 GAGQITNIMRIE----EF-QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGH-KPD----DRCTASMIAAYGKKNLLD 449 (592)
Q Consensus 380 ~A~~~~~~m~~~----g~-~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~-~pd----~~t~~~li~a~~~~g~~~ 449 (592)
+|...+...... +. +....++..+...|...|++++|...|++...... .++ ..++..+...|...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 666666655432 10 01133455566666666666666666665544210 111 124455555566666666
Q ss_pred HHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHHcCCHH
Q 007695 450 KALNLLLELEKD----GFEPG-PATYTVLVDWLGRLQLINEAEQLLGKISELGEA-PP----FKIQVSLCDMYARAGIEK 519 (592)
Q Consensus 450 ~A~~l~~~m~~~----g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~~~~~Li~~~~~~g~~~ 519 (592)
+|...+++.... +..+. ..++..+...|...|++++|...+++....... .+ ..++..+...|...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 666666554432 11000 234445555555555555555555554432110 01 334445555555555555
Q ss_pred HHHHHHHHHHH
Q 007695 520 KALQALGFLEA 530 (592)
Q Consensus 520 ~A~~~~~~m~~ 530 (592)
+|...+++..+
T Consensus 325 ~A~~~~~~al~ 335 (406)
T 3sf4_A 325 QAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555544
No 57
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.39 E-value=1.9e-11 Score=126.64 Aligned_cols=262 Identities=15% Similarity=0.033 Sum_probs=134.3
Q ss_pred HhhCHHHHHHHHHHHhhhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHc
Q 007695 233 REQNTQLYFKVAELVLSEESFQTN--VRDYSKLIDAHAKENCLEDAERILKKMNEN----GIVP-DIVTSTVLVHMYSKA 305 (592)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~p~--~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~----g~~p-d~~~~~~Li~~~~~~ 305 (592)
..++.+.+...++..+....-.+. ...|..+...+...|++++|...|++.... +-.| ...++..+...|...
T Consensus 21 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 100 (406)
T 3sf4_A 21 KSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVL 100 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHc
Confidence 445566666666655544211111 234555666666666666666666654321 1111 133455566666666
Q ss_pred CCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCC--------------------chHHHHHHHHHHHC----
Q 007695 306 GNLDRAKEAFESLRSHGF-QPD----KKVYNSMIMAYVNAGQ--------------------PKLGMSLVDMMITS---- 356 (592)
Q Consensus 306 g~~~~A~~~~~~m~~~g~-~pd----~~t~~~li~a~~~~g~--------------------~~~A~~l~~~m~~~---- 356 (592)
|++++|...|++.....- .++ ..++..+...|...|+ +++|...+.+....
T Consensus 101 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~ 180 (406)
T 3sf4_A 101 GNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTAL 180 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 666666666665543200 011 2355556666666666 66666666554431
Q ss_pred CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-C
Q 007695 357 GIER-SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF-QPT----LESCTLLVEAYGQAGDPDQARSNFDYMIRLGH-K 429 (592)
Q Consensus 357 g~~p-~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~-~ 429 (592)
+..+ ...++..+...|...|++++|...+++.....- .++ ..++..+...|...|++++|...|++...... .
T Consensus 181 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 260 (406)
T 3sf4_A 181 GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL 260 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhC
Confidence 1011 123455556666666666666666665543210 111 22555566666666666666666665544211 0
Q ss_pred CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007695 430 PD----DRCTASMIAAYGKKNLLDKALNLLLELEKD----GFEPG-PATYTVLVDWLGRLQLINEAEQLLGKIS 494 (592)
Q Consensus 430 pd----~~t~~~li~a~~~~g~~~~A~~l~~~m~~~----g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~ 494 (592)
++ ..++..+...|...|++++|...+.+..+. +..+. ..++..+..+|...|++++|...+++..
T Consensus 261 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 334 (406)
T 3sf4_A 261 KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 334 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 11 334555556666666666666666655432 11111 3445555666666666666666666554
No 58
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.37 E-value=2.1e-11 Score=122.07 Aligned_cols=275 Identities=13% Similarity=-0.019 Sum_probs=146.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCC-CCHHHH
Q 007695 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPD----IVTSTVLVHMYSKAGNLDRAKEAFESLRSH----GFQ-PDKKVY 330 (592)
Q Consensus 260 y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd----~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~----g~~-pd~~t~ 330 (592)
+......+...|++++|...|+++.+.... + ...+..+...|...|++++|...|++.... +-. ....++
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 334445556666666666666666554211 2 244555666666666666666666554321 100 112344
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 007695 331 NSMIMAYVNAGQPKLGMSLVDMMITSGI-ERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQ 409 (592)
Q Consensus 331 ~~li~a~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~ 409 (592)
..+...|...|++++|...+.+..+... .++.. ....++..+...|..
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------------------------~~~~~~~~l~~~~~~ 135 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKV-------------------------------GEARALYNLGNVYHA 135 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH-------------------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCch-------------------------------HHHHHHHHHHHHHHH
Confidence 4444555555555555555544433110 00100 002244445555555
Q ss_pred cCC--------------------HHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---
Q 007695 410 AGD--------------------PDQARSNFDYMIRL----GHKP-DDRCTASMIAAYGKKNLLDKALNLLLELEKD--- 461 (592)
Q Consensus 410 ~g~--------------------~~~A~~lf~~m~~~----g~~p-d~~t~~~li~a~~~~g~~~~A~~l~~~m~~~--- 461 (592)
.|+ +++|...+++.... +..+ ...++..+...|...|++++|...+++..+.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 215 (338)
T 3ro2_A 136 KGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 215 (338)
T ss_dssp HHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred cCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 555 55555555444321 1001 1234555555666666666666666665432
Q ss_pred -CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 007695 462 -GFE-PGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA-PP----FKIQVSLCDMYARAGIEKKALQALGFLEAKKEQ 534 (592)
Q Consensus 462 -g~~-p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~ 534 (592)
+.. ....++..+...+...|++++|...+++....... .+ ..++..+...|...|++++|...+++.......
T Consensus 216 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 216 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 100 01235666666777777777777777765532111 11 456667777788888888888887766542110
Q ss_pred -CC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 007695 535 -MG----PDDFERIINGLLAGGFLQDAQRVHGLMEAQ 566 (592)
Q Consensus 535 -~~----~~~~~~li~a~~~~g~~~~A~~l~~~m~~~ 566 (592)
.+ ..++..+...|...|++++|.+.+++..+.
T Consensus 296 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 296 LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 11 335667778888888888888888887754
No 59
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.37 E-value=1.6e-11 Score=127.92 Aligned_cols=227 Identities=12% Similarity=0.014 Sum_probs=161.8
Q ss_pred HhhCHHHHHHHHHHHhhhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHHc
Q 007695 233 REQNTQLYFKVAELVLSEESFQTN--VRDYSKLIDAHAKENCLEDAERILKKMNEN----GI-VPDIVTSTVLVHMYSKA 305 (592)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~p~--~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~----g~-~pd~~~~~~Li~~~~~~ 305 (592)
..++.+.+...++..+....-.+. ...|..+...|...|++++|...|++..+. +- +....++..+...|...
T Consensus 60 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 139 (411)
T 4a1s_A 60 NAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVM 139 (411)
T ss_dssp HTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHC
Confidence 667899999999988875322121 146888999999999999999999987653 11 22456788899999999
Q ss_pred CCHHHHHHHHHHHHhC----C-CCCCHHHHHHHHHHHHHcCC-----------------chHHHHHHHHHHHC----CC-
Q 007695 306 GNLDRAKEAFESLRSH----G-FQPDKKVYNSMIMAYVNAGQ-----------------PKLGMSLVDMMITS----GI- 358 (592)
Q Consensus 306 g~~~~A~~~~~~m~~~----g-~~pd~~t~~~li~a~~~~g~-----------------~~~A~~l~~~m~~~----g~- 358 (592)
|++++|...|++.... + ......++..+...|...|+ +++|...+.+..+. +.
T Consensus 140 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~ 219 (411)
T 4a1s_A 140 GRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDR 219 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred CCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCH
Confidence 9999999999987643 1 12234578889999999999 99999999887552 11
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC-
Q 007695 359 ERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF-QPT----LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK-PD- 431 (592)
Q Consensus 359 ~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~-pd- 431 (592)
.....++..+...|...|++++|...+++.....- ..+ ..++..+...|...|++++|...|++....... .+
T Consensus 220 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 299 (411)
T 4a1s_A 220 GAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGER 299 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCH
Confidence 11245788889999999999999999998875421 012 236677777888888888888888777653110 11
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007695 432 ---DRCTASMIAAYGKKNLLDKALNLLLELE 459 (592)
Q Consensus 432 ---~~t~~~li~a~~~~g~~~~A~~l~~~m~ 459 (592)
..++..+...|...|++++|...+++..
T Consensus 300 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 330 (411)
T 4a1s_A 300 EVEAQSCYSLGNTYTLLHEFNTAIEYHNRHL 330 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2345555556666666666666665544
No 60
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.34 E-value=2.9e-11 Score=121.07 Aligned_cols=269 Identities=13% Similarity=-0.009 Sum_probs=167.4
Q ss_pred HhhCHHHHHHHHHHHhhhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHc
Q 007695 233 REQNTQLYFKVAELVLSEESFQTN--VRDYSKLIDAHAKENCLEDAERILKKMNEN----GIVP-DIVTSTVLVHMYSKA 305 (592)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~p~--~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~----g~~p-d~~~~~~Li~~~~~~ 305 (592)
..++.+.+...++..+....-.+. ...|..+...+...|++++|.+.+++.... +..| ...++..+...|...
T Consensus 17 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 96 (338)
T 3ro2_A 17 KSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVL 96 (338)
T ss_dssp HTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred HhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHc
Confidence 668899999999988875322211 367889999999999999999999987543 1111 255788899999999
Q ss_pred CCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCC--------------------chHHHHHHHHHHHCCCCC
Q 007695 306 GNLDRAKEAFESLRSHGF-QPD----KKVYNSMIMAYVNAGQ--------------------PKLGMSLVDMMITSGIER 360 (592)
Q Consensus 306 g~~~~A~~~~~~m~~~g~-~pd----~~t~~~li~a~~~~g~--------------------~~~A~~l~~~m~~~g~~p 360 (592)
|++++|...|++..+..- .++ ..++..+...|...|+ +++|...+++....
T Consensus 97 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~---- 172 (338)
T 3ro2_A 97 GNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSL---- 172 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHH----
T ss_pred cCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHH----
Confidence 999999999998764210 122 3367777777877777 66666665554321
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HHHH
Q 007695 361 SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGH-KPD----DRCT 435 (592)
Q Consensus 361 ~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~-~pd----~~t~ 435 (592)
..... .......++..+...|...|++++|...+++...... .++ ..++
T Consensus 173 ------------------------~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 226 (338)
T 3ro2_A 173 ------------------------VTALG--DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAY 226 (338)
T ss_dssp ------------------------HHHHT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred ------------------------HHhcC--CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 10000 0001123445555555566666666666555443100 011 2245
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CC-CCHHHH
Q 007695 436 ASMIAAYGKKNLLDKALNLLLELEKD----GFEP-GPATYTVLVDWLGRLQLINEAEQLLGKISELG----EA-PPFKIQ 505 (592)
Q Consensus 436 ~~li~a~~~~g~~~~A~~l~~~m~~~----g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g----~~-p~~~~~ 505 (592)
..+...|...|++++|...+++.... +..+ ...++..+...+...|++++|...+++..... .. ....++
T Consensus 227 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 306 (338)
T 3ro2_A 227 SNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRAC 306 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 55566666666776666666665432 1111 13456666677777777777777777665321 10 113466
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Q 007695 506 VSLCDMYARAGIEKKALQALGFLEAK 531 (592)
Q Consensus 506 ~~Li~~~~~~g~~~~A~~~~~~m~~~ 531 (592)
..+...|...|++++|...+++....
T Consensus 307 ~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 307 WSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 67788888888888888888877654
No 61
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.33 E-value=2e-10 Score=118.81 Aligned_cols=294 Identities=10% Similarity=0.008 Sum_probs=200.9
Q ss_pred HHHcCCHHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHH--HHcCCHHHHH-----------HHHHHHHhCCCCCCHHH
Q 007695 267 HAKENCLEDAERILKKMNEN--GIVPD--IVTSTVLVHMY--SKAGNLDRAK-----------EAFESLRSHGFQPDKKV 329 (592)
Q Consensus 267 ~~~~g~~~~A~~l~~~m~~~--g~~pd--~~~~~~Li~~~--~~~g~~~~A~-----------~~~~~m~~~g~~pd~~t 329 (592)
+.+.+++++|..+++.+.+. .+..| ...|-.++..- .-.++++.+. +.++.+... +.+...
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~--~~~~~~ 99 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKK--QARLTG 99 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHH--THHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhc--CCCchh
Confidence 45688889998888887653 22223 33333333221 1223344444 666665432 111121
Q ss_pred ------HHHHHHHHHHcCCchHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--C---
Q 007695 330 ------YNSMIMAYVNAGQPKLGMSLVDMMITS----GIER-SEEIYLALLRSFAQCGDVRGAGQITNIMRIEE--F--- 393 (592)
Q Consensus 330 ------~~~li~a~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g--~--- 393 (592)
+......+...|++++|...+++.... +-.+ ...++..+...|...|+++.|...+.+..... .
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence 222556677889999999999988763 1111 24678888889999999999999888876541 1
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC
Q 007695 394 -QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGH-KPD----DRCTASMIAAYGKKNLLDKALNLLLELEKD----GF 463 (592)
Q Consensus 394 -~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~-~pd----~~t~~~li~a~~~~g~~~~A~~l~~~m~~~----g~ 463 (592)
+....+++.+...|...|++++|...|++...... .++ ..++..+..+|...|++++|...|.+..+. +.
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 11245788888999999999999999988775311 122 246777888999999999999999887662 33
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCC
Q 007695 464 -EPGPATYTVLVDWLGRLQLINEAEQLLGKISELG----EAPPFKIQVSLCDMYARAGI---EKKALQALGFLEAKKEQM 535 (592)
Q Consensus 464 -~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g----~~p~~~~~~~Li~~~~~~g~---~~~A~~~~~~m~~~~~~~ 535 (592)
+....++..+..++.+.|++++|...+++..+.. .......+..+...|...|+ +++|..+++.. +..+
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~ 336 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYA 336 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHH
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHH
Confidence 3346778889999999999999999999876431 11122335677888888888 77777777765 2222
Q ss_pred -CHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 007695 536 -GPDDFERIINGLLAGGFLQDAQRVHGLMEA 565 (592)
Q Consensus 536 -~~~~~~~li~a~~~~g~~~~A~~l~~~m~~ 565 (592)
....+..+...|...|++++|.+.|++...
T Consensus 337 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 337 DLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 234577788999999999999999998764
No 62
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.32 E-value=4.2e-10 Score=103.27 Aligned_cols=166 Identities=15% Similarity=0.117 Sum_probs=100.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007695 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335 (592)
Q Consensus 256 ~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~ 335 (592)
+..+|..+...|.+.|++++|.+.|++..+.... +..++..+..+|.+.|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 4455666666666666666666666666654322 55566666666666666666666666665443 334555555666
Q ss_pred HHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 007695 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQ 415 (592)
Q Consensus 336 a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~ 415 (592)
.+...++++.|...+.+..... +-+...+..+..+|.+.|++++|.+.|++..+.. +.+..+|..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 6666666666666666665543 2245556666666666666666666666665554 4455566666666666666666
Q ss_pred HHHHHHHHHH
Q 007695 416 ARSNFDYMIR 425 (592)
Q Consensus 416 A~~lf~~m~~ 425 (592)
|...|++..+
T Consensus 160 A~~~~~~al~ 169 (184)
T 3vtx_A 160 AVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 6666666555
No 63
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.32 E-value=4.8e-10 Score=102.91 Aligned_cols=166 Identities=16% Similarity=0.139 Sum_probs=125.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007695 291 DIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370 (592)
Q Consensus 291 d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~ 370 (592)
++..|..+...|...|++++|...|++..+.. +-+..+|..+..+|.+.|++++|...+........ -+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHH
Confidence 56678888888888888888888888877654 44677788888888888888888888887776543 35667777777
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 007695 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDK 450 (592)
Q Consensus 371 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~ 450 (592)
.+...++++.+...+....... +.+..++..+...|.+.|++++|+..|++..+..+. +..+|..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHH
Confidence 7788888888888888777665 556777777888888888888888888877775432 56677777777888888888
Q ss_pred HHHHHHHHHH
Q 007695 451 ALNLLLELEK 460 (592)
Q Consensus 451 A~~l~~~m~~ 460 (592)
|+..|++..+
T Consensus 160 A~~~~~~al~ 169 (184)
T 3vtx_A 160 AVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888877766
No 64
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.30 E-value=1.9e-09 Score=108.15 Aligned_cols=218 Identities=12% Similarity=0.011 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-------cCCc-------hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007695 309 DRAKEAFESLRSHGFQPDKKVYNSMIMAYVN-------AGQP-------KLGMSLVDMMITSGIERSEEIYLALLRSFAQ 374 (592)
Q Consensus 309 ~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~-------~g~~-------~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~ 374 (592)
++|..+|++..... +.+...|..++..+.. .|++ ++|..+|++.+..-.+-+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45666666665532 4455566666665543 3554 5566666665552111234455555555666
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HhcCCHHHHH
Q 007695 375 CGDVRGAGQITNIMRIEEFQPTLE-SCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAY-GKKNLLDKAL 452 (592)
Q Consensus 375 ~g~~~~A~~~~~~m~~~g~~~~~~-~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~-~~~g~~~~A~ 452 (592)
.|++++|..+|++..... +.+.. +|..++..+.+.|++++|..+|++..+..+ ++...|....... ...|+.++|.
T Consensus 112 ~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred cCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHH
Confidence 666666666666555432 11222 555555555555666666666655555322 1222232222111 1245555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007695 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG-EAP--PFKIQVSLCDMYARAGIEKKALQALGFLE 529 (592)
Q Consensus 453 ~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p--~~~~~~~Li~~~~~~g~~~~A~~~~~~m~ 529 (592)
.+|+...+.. +-+...+..++..+.+.|++++|..+|++..... ..| +...|..++..+.+.|+.+.|..+++++.
T Consensus 190 ~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 190 KIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555544421 1234444455555555555555555555555431 122 23445555555555555555555555554
Q ss_pred H
Q 007695 530 A 530 (592)
Q Consensus 530 ~ 530 (592)
+
T Consensus 269 ~ 269 (308)
T 2ond_A 269 T 269 (308)
T ss_dssp H
T ss_pred H
Confidence 4
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.30 E-value=2.4e-09 Score=107.36 Aligned_cols=220 Identities=9% Similarity=0.007 Sum_probs=169.4
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 007695 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSK-------AGNL-------DRAKEAFESLRSHGFQPDKKVYNSMIMAYVN 339 (592)
Q Consensus 274 ~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~-------~g~~-------~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~ 339 (592)
++|..+|++..... +-+...|..++..+.. .|++ ++|..+|++..+.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 67888888887752 3377788877777653 5775 8899999998873114466788899999999
Q ss_pred cCCchHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HcCCHHHH
Q 007695 340 AGQPKLGMSLVDMMITSGIERS-EE-IYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYG-QAGDPDQA 416 (592)
Q Consensus 340 ~g~~~~A~~l~~~m~~~g~~p~-~~-t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~-~~g~~~~A 416 (592)
.|++++|..+|++.++. .|+ .. +|..+...+.+.|++++|..+|++..+.. +.+...|........ ..|++++|
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999874 343 33 78888888999999999999999988765 445555554444432 36999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007695 417 RSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG-FEP--GPATYTVLVDWLGRLQLINEAEQLLGKI 493 (592)
Q Consensus 417 ~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g-~~p--~~~ty~~li~~~~~~g~~~~A~~l~~~m 493 (592)
..+|+...+..+. +...|..++..+.+.|++++|..+|++..... +.| ....|..++..+.+.|+.+.|..+++++
T Consensus 189 ~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999988875332 67788888888899999999999999988863 454 4677888888888899999999999988
Q ss_pred HhcCC
Q 007695 494 SELGE 498 (592)
Q Consensus 494 ~~~g~ 498 (592)
.+...
T Consensus 268 ~~~~p 272 (308)
T 2ond_A 268 FTAFR 272 (308)
T ss_dssp HHHTT
T ss_pred HHHcc
Confidence 87543
No 66
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.27 E-value=2.6e-10 Score=121.18 Aligned_cols=188 Identities=14% Similarity=0.028 Sum_probs=82.0
Q ss_pred HHHHHHHHHHhCC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCCCHHHHH
Q 007695 364 IYLALLRSFAQCG---DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQA----GDPDQARSNFDYMIRLGHKPDDRCTA 436 (592)
Q Consensus 364 t~~~Ll~~~~~~g---~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~----g~~~~A~~lf~~m~~~g~~pd~~t~~ 436 (592)
.+..|...|...| +.++|...|+.....| +++...+..|..+|... +++++|...|++.. . -+...+.
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~ 252 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWV 252 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHH
Confidence 4444444555555 4555555555555444 34444434444444332 34555555555444 1 1222333
Q ss_pred HHHHH-H--HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 007695 437 SMIAA-Y--GKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQ-----LINEAEQLLGKISELGEAPPFKIQVSL 508 (592)
Q Consensus 437 ~li~a-~--~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g-----~~~~A~~l~~~m~~~g~~p~~~~~~~L 508 (592)
.+-.. | ...+++++|+.+|++..+.| +...+..|...|. .| ++++|...|++.. .| +...+..|
T Consensus 253 ~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~L 324 (452)
T 3e4b_A 253 SLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYL 324 (452)
T ss_dssp HHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHH
Confidence 33332 2 23455555555555544433 3333444444443 22 5555555555444 21 34444444
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCC
Q 007695 509 CDMYAR----AGIEKKALQALGFLEAKKEQMGPDDFERIINGLLA----GGFLQDAQRVHGLMEAQG 567 (592)
Q Consensus 509 i~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~----~g~~~~A~~l~~~m~~~g 567 (592)
..+|.. ..++++|..+|++..+.+. +.....|...|.. ..+.++|...|+...+.|
T Consensus 325 g~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 325 GQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp HHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 444433 2255555555555444332 2223334444432 234455555555444443
No 67
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.25 E-value=3e-10 Score=121.46 Aligned_cols=196 Identities=11% Similarity=0.033 Sum_probs=113.7
Q ss_pred CHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007695 361 SEEIYLALLRSFAQCGDV-RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439 (592)
Q Consensus 361 ~~~t~~~Ll~~~~~~g~~-~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li 439 (592)
+...+..+...|...|++ ++|...|++..+.. +.+..+|..+...|.+.|++++|...|++..+. .|+...+..+.
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg 177 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLS 177 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHH
Confidence 455555555555555555 55555555555543 334555666666666666666666666665553 24445555555
Q ss_pred HHHHhc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHhcCCC--C
Q 007695 440 AAYGKK---------NLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRL--------QLINEAEQLLGKISELGEA--P 500 (592)
Q Consensus 440 ~a~~~~---------g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~--------g~~~~A~~l~~~m~~~g~~--p 500 (592)
.+|... |++++|+..|++..+.. +-+...+..+..+|... |++++|...|++..+.... -
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 256 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASS 256 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCccc
Confidence 555555 66666666666655532 22345555566666555 6666666666666654320 1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 007695 501 PFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHG 561 (592)
Q Consensus 501 ~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~ 561 (592)
+...|..+..+|...|++++|...|++..+.. +-++..+..+..++...|++++|++.++
T Consensus 257 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 257 NPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56666666666666777777776666666542 2345556666666666666666665443
No 68
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.25 E-value=4e-11 Score=119.19 Aligned_cols=170 Identities=14% Similarity=0.081 Sum_probs=124.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC------C
Q 007695 256 NVRDYSKLIDAHAKENCLEDAERILKKMNEN-------GIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSH------G 322 (592)
Q Consensus 256 ~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~-------g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~------g 322 (592)
+..++..+...+...|++++|..+|+++.+. ..+....++..+...|...|++++|...|++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4566888889999999999999999988763 22334667888889999999999999999887653 1
Q ss_pred -CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHC------CC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc---
Q 007695 323 -FQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS------GI-ERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE--- 391 (592)
Q Consensus 323 -~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~------g~-~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~--- 391 (592)
.+....++..+...|...|++++|...+++..+. +. +....++..+...|...|++++|...++.....
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1223557778888888888888888888887653 21 223455677777888888888888888777654
Q ss_pred ---CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007695 392 ---EFQP-TLESCTLLVEAYGQAGDPDQARSNFDYMIR 425 (592)
Q Consensus 392 ---g~~~-~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~ 425 (592)
+..| ...++..+...|...|++++|...|+++..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1112 245677777778888888888888877765
No 69
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.23 E-value=4.9e-10 Score=119.80 Aligned_cols=213 Identities=11% Similarity=-0.001 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHH
Q 007695 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNL-DRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVD 351 (592)
Q Consensus 273 ~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~-~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~ 351 (592)
++++.+.++...... +.+...+..+...|...|++ ++|...|++..+.. +.+..+|..+..+|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 555555555544432 22555666666666666666 66666666665542 3345566666666666666666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhC---------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc--------CCHH
Q 007695 352 MMITSGIERSEEIYLALLRSFAQC---------GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQA--------GDPD 414 (592)
Q Consensus 352 ~m~~~g~~p~~~t~~~Ll~~~~~~---------g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~--------g~~~ 414 (592)
+..+. .|+...+..+...|... |++++|...|++..+.. +.+...|..+..+|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 66553 24455555566666555 55555555555555543 33455555555555555 4455
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007695 415 QARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494 (592)
Q Consensus 415 ~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~ 494 (592)
+|...|++.....+. ..-+...|..+..+|...|++++|...|++..
T Consensus 239 ~A~~~~~~al~~~p~---------------------------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 285 (474)
T 4abn_A 239 QALSAYAQAEKVDRK---------------------------------ASSNPDLHLNRATLHKYEESYGEALEGFSQAA 285 (474)
T ss_dssp HHHHHHHHHHHHCGG---------------------------------GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC---------------------------------cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555555544442110 00234444555555555555555555555554
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007695 495 ELGEAPPFKIQVSLCDMYARAGIEKKALQA 524 (592)
Q Consensus 495 ~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~ 524 (592)
+.... +...+..+..++...|++++|...
T Consensus 286 ~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 286 ALDPA-WPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHCTT-CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCC-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44322 444455555555555555555543
No 70
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.22 E-value=9.4e-10 Score=113.80 Aligned_cols=230 Identities=11% Similarity=-0.080 Sum_probs=162.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHHHCC--CC----CCHHHHH
Q 007695 298 LVHMYSKAGNLDRAKEAFESLRSH----GFQP-DKKVYNSMIMAYVNAGQPKLGMSLVDMMITSG--IE----RSEEIYL 366 (592)
Q Consensus 298 Li~~~~~~g~~~~A~~~~~~m~~~----g~~p-d~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g--~~----p~~~t~~ 366 (592)
....+...|++++|...|++..+. +-.+ ...+|..+...|...|++++|...+.+..+.- .. ....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 556667788888888888887653 1111 23577788888888888888888888776521 11 1235677
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CC-CCCHHHHH
Q 007695 367 ALLRSFAQCGDVRGAGQITNIMRIEEF-QPT----LESCTLLVEAYGQAGDPDQARSNFDYMIRL----GH-KPDDRCTA 436 (592)
Q Consensus 367 ~Ll~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~----g~-~pd~~t~~ 436 (592)
.+...|...|++++|...+.+.....- ..+ ..++..+...|...|++++|...|++.... +. .....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 888888888999999888887764310 111 247788888899999999999998887762 22 22356677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCC-CHHHHHHH
Q 007695 437 SMIAAYGKKNLLDKALNLLLELEKD----GFEPGPATYTVLVDWLGRLQL---INEAEQLLGKISELGEAP-PFKIQVSL 508 (592)
Q Consensus 437 ~li~a~~~~g~~~~A~~l~~~m~~~----g~~p~~~ty~~li~~~~~~g~---~~~A~~l~~~m~~~g~~p-~~~~~~~L 508 (592)
.+..+|.+.|++++|...+++..+. +-+.....+..+...+...|+ +++|..++++. +..| ....+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 8888889999999999988886653 111122345667777778888 66677766655 2222 23567788
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 007695 509 CDMYARAGIEKKALQALGFLEA 530 (592)
Q Consensus 509 i~~~~~~g~~~~A~~~~~~m~~ 530 (592)
...|...|++++|...+++...
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8999999999999999987765
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.21 E-value=4.4e-10 Score=111.61 Aligned_cols=239 Identities=9% Similarity=0.029 Sum_probs=170.3
Q ss_pred CHHHHHHHHHHHHHcCCchHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc------C
Q 007695 326 DKKVYNSMIMAYVNAGQPKLGMSLVDMMITS-------GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE------E 392 (592)
Q Consensus 326 d~~t~~~li~a~~~~g~~~~A~~l~~~m~~~-------g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~------g 392 (592)
+..++..+...|...|++++|..+++++.+. .......++..+...|...|++++|...+++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4678899999999999999999999999873 23335677888999999999999999999998764 2
Q ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---
Q 007695 393 F-QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL------GHKP-DDRCTASMIAAYGKKNLLDKALNLLLELEKD--- 461 (592)
Q Consensus 393 ~-~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~------g~~p-d~~t~~~li~a~~~~g~~~~A~~l~~~m~~~--- 461 (592)
- +....++..+...|...|++++|...|++.... +..| ....+..+...|...|++++|..+|++..+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 223677889999999999999999999988764 2222 3456778888999999999999999998764
Q ss_pred ---CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------CCCCC-------HHHHHHHHHHHHHcCCHHHHHH
Q 007695 462 ---GFEP-GPATYTVLVDWLGRLQLINEAEQLLGKISEL-------GEAPP-------FKIQVSLCDMYARAGIEKKALQ 523 (592)
Q Consensus 462 ---g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~-------g~~p~-------~~~~~~Li~~~~~~g~~~~A~~ 523 (592)
+..| ...++..+..++...|++++|...++++.+. ...+. ...+..+...+...+.+.++..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 2123 2457888899999999999999999998753 11111 1122222333334445555555
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 007695 524 ALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEA 565 (592)
Q Consensus 524 ~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~ 565 (592)
.++..... .+....+|..+..+|.+.|++++|.++|++..+
T Consensus 266 ~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 266 WYKACKVD-SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhhcCCC-CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55555432 222455788899999999999999999998865
No 72
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.18 E-value=2.4e-09 Score=113.72 Aligned_cols=287 Identities=13% Similarity=0.042 Sum_probs=189.4
Q ss_pred HHHHHHHHHHHcCCH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhCCCCCCHHHH
Q 007695 259 DYSKLIDAHAKENCL---EDAERILKKMNENGIVPDIVTSTVLVHMYSKAG-----NLDRAKEAFESLRSHGFQPDKKVY 330 (592)
Q Consensus 259 ~y~~Li~~~~~~g~~---~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g-----~~~~A~~~~~~m~~~g~~pd~~t~ 330 (592)
.+..|...|...|+. ++|...|++..+. +...+..|...+...+ ++++|...|++..+.|. ++ .+
T Consensus 37 A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~-~~--A~ 109 (452)
T 3e4b_A 37 AQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGE-GN--TL 109 (452)
T ss_dssp GGGTCC--------------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTC-SS--CH
T ss_pred HHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCC-HH--HH
Confidence 344555556667777 8999999988764 5555666666555554 78899999999998762 33 67
Q ss_pred HHHHHHHHHcCCch---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007695 331 NSMIMAYVNAGQPK---LGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAY 407 (592)
Q Consensus 331 ~~li~a~~~~g~~~---~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~ 407 (592)
..|...|...+... ++.+.+......| +......|...|...+.++.+......+.+.-...+..++..|...|
T Consensus 110 ~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~ 186 (452)
T 3e4b_A 110 IPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVY 186 (452)
T ss_dssp HHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77788887765543 4556666665555 34567777888888775544443332222221123334888999999
Q ss_pred HHcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--
Q 007695 408 GQAG---DPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKK----NLLDKALNLLLELEKDGFEPGPATYTVLVDW-L-- 477 (592)
Q Consensus 408 ~~~g---~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~----g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~-~-- 477 (592)
.+.| +.++|...|++....|. ++...+..+...|... +++++|+.+|+... . -+...+..+... +
T Consensus 187 ~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~ 261 (452)
T 3e4b_A 187 QKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDF 261 (452)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHS
T ss_pred HHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhC
Confidence 9999 99999999999998776 3555555566677554 79999999999987 3 345556666655 3
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---
Q 007695 478 GRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG-----IEKKALQALGFLEAKKEQMGPDDFERIINGLLA--- 549 (592)
Q Consensus 478 ~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g-----~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~--- 549 (592)
...+++++|...|++..+.| +...+..|..+|. .| ++++|...|++.. . -++..+..|...|..
T Consensus 262 ~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g 333 (452)
T 3e4b_A 262 PELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYL 333 (452)
T ss_dssp GGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTT
T ss_pred CCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCC
Confidence 46899999999999999877 6788888888887 56 9999999999887 3 356777778877776
Q ss_pred -CCCHHHHHHHHHHHHHCCC
Q 007695 550 -GGFLQDAQRVHGLMEAQGF 568 (592)
Q Consensus 550 -~g~~~~A~~l~~~m~~~g~ 568 (592)
..+.++|.+.|++..+.|.
T Consensus 334 ~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 334 GKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp SSCCHHHHHHHHHHHHTTTC
T ss_pred CCcCHHHHHHHHHHHHhhCh
Confidence 3499999999999888765
No 73
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.18 E-value=4.6e-09 Score=108.43 Aligned_cols=310 Identities=10% Similarity=-0.040 Sum_probs=211.5
Q ss_pred CCCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHH--HHcCCHHHHH---------HHH
Q 007695 253 FQTNVRDYSKLIDAH--AKENCLEDAERILKKMNEN--GIVPD--IVTSTVLVHMY--SKAGNLDRAK---------EAF 315 (592)
Q Consensus 253 ~~p~~~~y~~Li~~~--~~~g~~~~A~~l~~~m~~~--g~~pd--~~~~~~Li~~~--~~~g~~~~A~---------~~~ 315 (592)
..|+..+-+.|-..| .+.+++++|.++++.+.+. .+..| ...|-.|+..- .-.+.+..+. ..+
T Consensus 6 ~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l 85 (378)
T 3q15_A 6 AIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELL 85 (378)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHH
Confidence 346666666666666 7899999999999987653 22223 33344444321 1112222222 556
Q ss_pred HHHHhCCCCCC-H---HHHHHHHHHHHHcCCchHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhCCCHHHHHHHHH
Q 007695 316 ESLRSHGFQPD-K---KVYNSMIMAYVNAGQPKLGMSLVDMMITSGI-ERS----EEIYLALLRSFAQCGDVRGAGQITN 386 (592)
Q Consensus 316 ~~m~~~g~~pd-~---~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~Ll~~~~~~g~~~~A~~~~~ 386 (592)
+.+.....+.+ . ..|......+...|++++|...|++...... .++ ..++..+...|...|+++.|...+.
T Consensus 86 ~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~ 165 (378)
T 3q15_A 86 ETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHIL 165 (378)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 55543210101 1 1223344556789999999999999876421 122 4578888999999999999999998
Q ss_pred HHHHcC--CC---C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHH
Q 007695 387 IMRIEE--FQ---P-TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGH-KPD----DRCTASMIAAYGKKNLLDKALNLL 455 (592)
Q Consensus 387 ~m~~~g--~~---~-~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~-~pd----~~t~~~li~a~~~~g~~~~A~~l~ 455 (592)
+..... .. + ...+++.+...|...|++++|...|++...... .++ ..++..+..+|...|++++|...|
T Consensus 166 ~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~ 245 (378)
T 3q15_A 166 QALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHF 245 (378)
T ss_dssp HHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 876531 11 1 256788899999999999999999988766310 112 346777888999999999999999
Q ss_pred HHHHHC----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHHHcCC---HHHHHHH
Q 007695 456 LELEKD----GFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE----APPFKIQVSLCDMYARAGI---EKKALQA 524 (592)
Q Consensus 456 ~~m~~~----g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~----~p~~~~~~~Li~~~~~~g~---~~~A~~~ 524 (592)
.+..+. +.+....++..+..++.+.|++++|...+++..+... ......+..+...|...++ +.+|...
T Consensus 246 ~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~ 325 (378)
T 3q15_A 246 QKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSY 325 (378)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 988761 2223367888899999999999999999999876422 2223456666777777888 7777777
Q ss_pred HHHHHHcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 007695 525 LGFLEAKKEQM-GPDDFERIINGLLAGGFLQDAQRVHGLMEA 565 (592)
Q Consensus 525 ~~~m~~~~~~~-~~~~~~~li~a~~~~g~~~~A~~l~~~m~~ 565 (592)
++.. +..+ ....+..+...|...|++++|.+.|++...
T Consensus 326 ~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 326 FEKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7653 2222 233567788999999999999999998764
No 74
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.18 E-value=1.7e-08 Score=103.68 Aligned_cols=299 Identities=14% Similarity=0.041 Sum_probs=208.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCH----HHH
Q 007695 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIV----TSTVLVHMYSKAGNLDRAKEAFESLRSHGF-QPDK----KVY 330 (592)
Q Consensus 260 y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~----~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~-~pd~----~t~ 330 (592)
+......+...|++++|...+++........+.. +++.+...+...|++++|...+++.....- .++. .++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3445556778999999999999988764332332 466777888899999999999988764210 1222 346
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC----CCHHH
Q 007695 331 NSMIMAYVNAGQPKLGMSLVDMMITS----GIE--R-SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ----PTLES 399 (592)
Q Consensus 331 ~~li~a~~~~g~~~~A~~l~~~m~~~----g~~--p-~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~----~~~~~ 399 (592)
+.+...+...|++++|...+++.... +.. | ...++..+...+...|++++|...+.+.....-. ....+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 67788889999999999999888653 221 2 2455677888899999999999999988765321 12457
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHH----HHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHH
Q 007695 400 CTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD--DRCTA----SMIAAYGKKNLLDKALNLLLELEKDGFEP---GPATY 470 (592)
Q Consensus 400 ~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd--~~t~~----~li~a~~~~g~~~~A~~l~~~m~~~g~~p---~~~ty 470 (592)
+..+...+...|++++|...+++.......++ ..... ..+..+...|++++|...+.+.......+ ....+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 78888899999999999999998876321111 11111 23344778999999999998876543211 13356
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc----CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 007695 471 TVLVDWLGRLQLINEAEQLLGKISEL----GEAPPF-KIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIIN 545 (592)
Q Consensus 471 ~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~-~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 545 (592)
..+...+...|++++|...++..... +..++. .++..+..++...|+.++|...+++....... ...+.
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~------~g~~~ 330 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR------TGFIS 330 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH------HCCCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc------ccHHH
Confidence 67788888999999999999887643 222122 36667778888999999999999888764211 12334
Q ss_pred HHHhCCCHHHHHHHHHHHHHC
Q 007695 546 GLLAGGFLQDAQRVHGLMEAQ 566 (592)
Q Consensus 546 a~~~~g~~~~A~~l~~~m~~~ 566 (592)
.+...| +....+++.+...
T Consensus 331 ~~~~~g--~~~~~ll~~~~~~ 349 (373)
T 1hz4_A 331 HFVIEG--EAMAQQLRQLIQL 349 (373)
T ss_dssp HHHTTH--HHHHHHHHHHHHT
T ss_pred HHHHcc--HHHHHHHHHHHhC
Confidence 455555 6677788887765
No 75
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.17 E-value=3.5e-09 Score=96.12 Aligned_cols=163 Identities=18% Similarity=0.166 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007695 259 DYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYV 338 (592)
Q Consensus 259 ~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~ 338 (592)
.|..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|...|+++.+.. +.+..++..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34555556666666666666666655432 2245556666666666666666666666655442 334555556666666
Q ss_pred HcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007695 339 NAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARS 418 (592)
Q Consensus 339 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~ 418 (592)
..|++++|...++++.... +.+...+..+...+...|++++|...++...... +.+..++..+...|...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 6666666666666655542 2245555555555556666666666655555543 3345555555555555555555555
Q ss_pred HHHHHHH
Q 007695 419 NFDYMIR 425 (592)
Q Consensus 419 lf~~m~~ 425 (592)
.+++...
T Consensus 166 ~~~~~~~ 172 (186)
T 3as5_A 166 HFKKANE 172 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555544
No 76
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.17 E-value=4.1e-09 Score=95.62 Aligned_cols=164 Identities=16% Similarity=0.129 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007695 293 VTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372 (592)
Q Consensus 293 ~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~ 372 (592)
..|..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 345666677777777777777777766543 3456667777777777777777777777776643 23566666666777
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007695 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452 (592)
Q Consensus 373 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~ 452 (592)
...|++++|...++.+.... +.+...+..+...|...|++++|...|++...... .+...+..+...|...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP-NEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCHHHHH
Confidence 77777777777777666654 44566666666667777777777777766665432 24555666666666666666666
Q ss_pred HHHHHHHH
Q 007695 453 NLLLELEK 460 (592)
Q Consensus 453 ~l~~~m~~ 460 (592)
..++...+
T Consensus 165 ~~~~~~~~ 172 (186)
T 3as5_A 165 PHFKKANE 172 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666544
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.17 E-value=1.7e-08 Score=103.67 Aligned_cols=262 Identities=12% Similarity=-0.015 Sum_probs=145.2
Q ss_pred HhhCHHHHHHHHHHHhhhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHH
Q 007695 233 REQNTQLYFKVAELVLSEESFQTNV----RDYSKLIDAHAKENCLEDAERILKKMNENGI-VPDI----VTSTVLVHMYS 303 (592)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~p~~----~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~-~pd~----~~~~~Li~~~~ 303 (592)
..++.+.+...+...+.... ..+. ..++.+...+...|++++|...+++...... .++. .++..+...+.
T Consensus 26 ~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 104 (373)
T 1hz4_A 26 NDGNPDEAERLAKLALEELP-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILF 104 (373)
T ss_dssp HTTCHHHHHHHHHHHHHTCC-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 34566666666666554332 1122 1345555666677777777777776544210 0121 23455666667
Q ss_pred HcCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCC----CCHHHHHHHHHHH
Q 007695 304 KAGNLDRAKEAFESLRSH----GFQ--P-DKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIE----RSEEIYLALLRSF 372 (592)
Q Consensus 304 ~~g~~~~A~~~~~~m~~~----g~~--p-d~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~----p~~~t~~~Ll~~~ 372 (592)
..|++++|...|++.... +.. | ...++..+...+...|++++|...+++....... ....++..+...+
T Consensus 105 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 184 (373)
T 1hz4_A 105 AQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCS 184 (373)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHH
Confidence 777777777777666532 211 2 2334555666677777777777777766653211 1234566666667
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCC--HHHHH----HHHHHHHHcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHH
Q 007695 373 AQCGDVRGAGQITNIMRIEEFQPT--LESCT----LLVEAYGQAGDPDQARSNFDYMIRLGHKP---DDRCTASMIAAYG 443 (592)
Q Consensus 373 ~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~----~Li~~~~~~g~~~~A~~lf~~m~~~g~~p---d~~t~~~li~a~~ 443 (592)
...|++++|...+++.....-.++ ..... ..+..+...|++++|...+++.......+ ....+..+...+.
T Consensus 185 ~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~ 264 (373)
T 1hz4_A 185 LARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQI 264 (373)
T ss_dssp HHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHH
Confidence 777777777777776654311111 11111 22334667777777777776665432211 1224455566667
Q ss_pred hcCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007695 444 KKNLLDKALNLLLELEKD----GFEPGP-ATYTVLVDWLGRLQLINEAEQLLGKISE 495 (592)
Q Consensus 444 ~~g~~~~A~~l~~~m~~~----g~~p~~-~ty~~li~~~~~~g~~~~A~~l~~~m~~ 495 (592)
..|++++|...++..... |..++. ..+..+..++...|+.++|...+++...
T Consensus 265 ~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 265 LLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 777777777777665432 222222 2455556666677777777777776654
No 78
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.07 E-value=5.5e-09 Score=116.81 Aligned_cols=166 Identities=11% Similarity=0.042 Sum_probs=140.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007695 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335 (592)
Q Consensus 256 ~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~ 335 (592)
+..+|+.|..+|.+.|++++|++.|++..+.... +...|+.|..+|.+.|++++|...|++..+.. +-+..+|+.+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 4567899999999999999999999998886322 57889999999999999999999999988764 446788999999
Q ss_pred HHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 007695 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQ 415 (592)
Q Consensus 336 a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~ 415 (592)
+|...|++++|++.|++.++... -+...|+.+..+|.+.|++++|...|++..+.. +-+...+..+..+|...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P-~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINP-AFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHH
Confidence 99999999999999999888643 267889999999999999999999999988875 5568889999999999999998
Q ss_pred HHHHHHHHHH
Q 007695 416 ARSNFDYMIR 425 (592)
Q Consensus 416 A~~lf~~m~~ 425 (592)
|.+.|++..+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888877654
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.07 E-value=2.1e-08 Score=95.28 Aligned_cols=196 Identities=13% Similarity=0.005 Sum_probs=152.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007695 255 TNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334 (592)
Q Consensus 255 p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li 334 (592)
.|+..+......+.+.|++++|...|++..+...+++...+..+..++...|++++|...|++..+.. +.+..+|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 45678888899999999999999999999887654688888889999999999999999999998764 34567899999
Q ss_pred HHHHHcCCchHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHH
Q 007695 335 MAYVNAGQPKLGMSLVDMMITSGIERSE-------EIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP--TLESCTLLVE 405 (592)
Q Consensus 335 ~a~~~~g~~~~A~~l~~~m~~~g~~p~~-------~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~Li~ 405 (592)
.+|...|++++|+..+++..+... .+. .+|..+...+...|++++|...|+...+.. +. +...+..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHHH
Confidence 999999999999999999988542 245 558888888999999999999999988764 33 3577778888
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007695 406 AYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKD 461 (592)
Q Consensus 406 ~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~ 461 (592)
+|...| ..+++++...+. .+...|.... ....+.+++|+..|++..+.
T Consensus 162 ~~~~~~-----~~~~~~a~~~~~-~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATPLAS-SNKEKYASEK--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHH-----HHHHHHHGGGTT-TCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHhccc-CCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 876554 344555554432 2344444333 33456689999999988774
No 80
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.06 E-value=8.1e-07 Score=98.21 Aligned_cols=403 Identities=9% Similarity=0.004 Sum_probs=258.5
Q ss_pred CccHHHHHH------HHHhhcccccCCCCCCCCcchHHHHHHHHccc-ccCC---chhHHHHHHhhcC-----CCHhhHH
Q 007695 162 DPKWTEVAE------KIHERGEMILPEEPKPITGKCKLITDKILSLE-KEED---PSPLLAEWKELLQ-----PSRIDWI 226 (592)
Q Consensus 162 ~~~~~~~~~------~~~ea~~~f~~~~~~~~~~~~~~~~~~l~~~~-~~g~---~~~A~~~~~~~~~-----p~~~t~~ 226 (592)
...|..... .+..++.+| +......|.+..+...-+.+. +.++ .+.+..+|++++. |++..|.
T Consensus 66 ~~~W~~yi~~~~~~~~~~~aR~vy--EraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~ 143 (679)
T 4e6h_A 66 IFLYVKLLKHHVSLKQWKQVYETF--DKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWL 143 (679)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHH--HHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHH--HHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 334665532 344455554 222223344444555555554 6677 8899999988732 7888888
Q ss_pred HHHHHHHh-hC--------HHHHHHHHHHHhhhCCC-CC-CHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHHC
Q 007695 227 NLLDRLRE-QN--------TQLYFKVAELVLSEESF-QT-NVRDYSKLIDAHA---------KENCLEDAERILKKMNEN 286 (592)
Q Consensus 227 ~lL~~~~~-~~--------~~~~~~~~~~~~~~~~~-~p-~~~~y~~Li~~~~---------~~g~~~~A~~l~~~m~~~ 286 (592)
.-+.-... ++ .....++++..+..-|. .+ +...|...+.... ..++++.+..+|++....
T Consensus 144 ~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~i 223 (679)
T 4e6h_A 144 SYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQ 223 (679)
T ss_dssp HHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhC
Confidence 77765422 22 12233556666655666 55 3456777776543 234578888999988853
Q ss_pred CCCCCHHHHHHHHHHHHHcC-------------CHHHHHHHHHHHHh--CCCC---------------C-----C---HH
Q 007695 287 GIVPDIVTSTVLVHMYSKAG-------------NLDRAKEAFESLRS--HGFQ---------------P-----D---KK 328 (592)
Q Consensus 287 g~~pd~~~~~~Li~~~~~~g-------------~~~~A~~~~~~m~~--~g~~---------------p-----d---~~ 328 (592)
....-..+|......-...+ +++.|...+.++.. .++. | + ..
T Consensus 224 P~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~ 303 (679)
T 4e6h_A 224 PMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLL 303 (679)
T ss_dssp CCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHH
Confidence 11111234433222211111 22334455544321 1111 1 0 23
Q ss_pred HHHHHHHHHHHcC-------CchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHH-HHHHHHHHcCCCCCHHHH
Q 007695 329 VYNSMIMAYVNAG-------QPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAG-QITNIMRIEEFQPTLESC 400 (592)
Q Consensus 329 t~~~li~a~~~~g-------~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~-~~~~~m~~~g~~~~~~~~ 400 (592)
.|...+..--..+ ....+..+|++.+.. .+-+...|...+..+.+.|+.++|. ++|+..... ++.+...|
T Consensus 304 lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lw 381 (679)
T 4e6h_A 304 IWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLA 381 (679)
T ss_dssp HHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHH
T ss_pred HHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHH
Confidence 4555554433222 123456778888775 3447888888888888999999996 999999865 36677788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC---------CCCC------------HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007695 401 TLLVEAYGQAGDPDQARSNFDYMIRLG---------HKPD------------DRCTASMIAAYGKKNLLDKALNLLLELE 459 (592)
Q Consensus 401 ~~Li~~~~~~g~~~~A~~lf~~m~~~g---------~~pd------------~~t~~~li~a~~~~g~~~~A~~l~~~m~ 459 (592)
-..+...-+.|+++.|..+|+.+.... ..|+ ...|...+....+.|..+.|..+|....
T Consensus 382 l~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~ 461 (679)
T 4e6h_A 382 FSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCR 461 (679)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 889999999999999999999987631 0132 2357777777788899999999999998
Q ss_pred HC-CCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--
Q 007695 460 KD-GFEPGPATYTVLVDWLGRL-QLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQM-- 535 (592)
Q Consensus 460 ~~-g~~p~~~ty~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~-- 535 (592)
+. + .+....|...+..-.+. ++.+.|..+|+...+. ..-+...+...+......|+.+.|..+|++.......+
T Consensus 462 ~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~ 539 (679)
T 4e6h_A 462 RLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHL 539 (679)
T ss_dssp HTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTH
T ss_pred HhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHH
Confidence 76 2 12233443333333343 4589999999999886 33367788889998889999999999999988764322
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH
Q 007695 536 GPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASE 572 (592)
Q Consensus 536 ~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~g~~pd~ 572 (592)
....|...+.--.+.|+.+.+.++.+++.+. .|+.
T Consensus 540 ~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~ 574 (679)
T 4e6h_A 540 LKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEV 574 (679)
T ss_dssp HHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCC
Confidence 3457888888888999999999999999987 4443
No 81
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.05 E-value=8.5e-09 Score=115.25 Aligned_cols=166 Identities=10% Similarity=0.040 Sum_probs=146.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007695 291 DIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370 (592)
Q Consensus 291 d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~ 370 (592)
+...|+.|...|.+.|++++|...|++..+.. +-+..+|+.+..+|.+.|++++|+..|++.++... -+...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P-~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 46789999999999999999999999998764 44688999999999999999999999999988643 26889999999
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 007695 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDK 450 (592)
Q Consensus 371 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~ 450 (592)
+|...|++++|.+.|++..+.. +-+..+|+.+..+|.+.|++++|+..|++..+..+. +...|..+..+|...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHH
Confidence 9999999999999999998876 567899999999999999999999999999886443 57788889999999999999
Q ss_pred HHHHHHHHHH
Q 007695 451 ALNLLLELEK 460 (592)
Q Consensus 451 A~~l~~~m~~ 460 (592)
|.+.+++..+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9888887654
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.03 E-value=3.3e-08 Score=101.97 Aligned_cols=226 Identities=10% Similarity=-0.031 Sum_probs=109.0
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCCchHHHHHHHHHHHCC--C---CC-CHHHHHHHH
Q 007695 301 MYSKAGNLDRAKEAFESLRSHGF-QPD----KKVYNSMIMAYVNAGQPKLGMSLVDMMITSG--I---ER-SEEIYLALL 369 (592)
Q Consensus 301 ~~~~~g~~~~A~~~~~~m~~~g~-~pd----~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g--~---~p-~~~t~~~Ll 369 (592)
.+...|++++|...|++..+..- .++ ..++..+...|...|+++.|...+.+..+.. . .+ ...+++.+.
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 34445555555555555442210 011 2344445555555555555555555443310 0 00 123445555
Q ss_pred HHHHhCCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHHHHHHH
Q 007695 370 RSFAQCGDVRGAGQITNIMRIE----EFQ-PTLESCTLLVEAYGQAGDPDQARSNFDYMIR-----LGHKPDDRCTASMI 439 (592)
Q Consensus 370 ~~~~~~g~~~~A~~~~~~m~~~----g~~-~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~-----~g~~pd~~t~~~li 439 (592)
.+|...|++++|...+.+.... +-+ ....++..+...|...|++++|...|++... ..+. ...++..+.
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la 268 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLFGLS 268 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHHHHH
Confidence 5555555555555555544432 100 0123455556666666666666666655544 2221 244555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCC-CHHHHHHHHHH
Q 007695 440 AAYGKKNLLDKALNLLLELEKD----GFEPGPATYTVLVDWLGRLQL---INEAEQLLGKISELGEAP-PFKIQVSLCDM 511 (592)
Q Consensus 440 ~a~~~~g~~~~A~~l~~~m~~~----g~~p~~~ty~~li~~~~~~g~---~~~A~~l~~~m~~~g~~p-~~~~~~~Li~~ 511 (592)
.+|.+.|++++|...+++..+. +.+.....+..+...+...++ +.+|...++.. +..| ....+..+...
T Consensus 269 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 269 WTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHHHH
Confidence 6666666666666666655442 111112334444444445555 45555554442 1111 22345566667
Q ss_pred HHHcCCHHHHHHHHHHHHH
Q 007695 512 YARAGIEKKALQALGFLEA 530 (592)
Q Consensus 512 ~~~~g~~~~A~~~~~~m~~ 530 (592)
|...|++++|...|++..+
T Consensus 346 y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 7777777777777666543
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.03 E-value=5.4e-08 Score=92.40 Aligned_cols=133 Identities=12% Similarity=-0.016 Sum_probs=65.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007695 291 DIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370 (592)
Q Consensus 291 d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~ 370 (592)
|+..+......+...|++++|...|++..+..-+++...+..+..++...|++++|+..+++..+.... +..++..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHH
Confidence 445555555555555666666666655554431144455555555555555555555555555543211 3444555555
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007695 371 SFAQCGDVRGAGQITNIMRIEEFQPTL-------ESCTLLVEAYGQAGDPDQARSNFDYMIR 425 (592)
Q Consensus 371 ~~~~~g~~~~A~~~~~~m~~~g~~~~~-------~~~~~Li~~~~~~g~~~~A~~lf~~m~~ 425 (592)
+|...|++++|...+++..... +.+. ..|..+...+...|++++|...|++..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 145 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD 145 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh
Confidence 5555555555555555555443 2223 2244444444444444444444444443
No 84
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.01 E-value=2.8e-09 Score=103.88 Aligned_cols=227 Identities=11% Similarity=-0.023 Sum_probs=141.9
Q ss_pred HcCCHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC------CC-CCCHHHHHHHH
Q 007695 269 KENCLEDAERILKKMNE-------NGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSH------GF-QPDKKVYNSMI 334 (592)
Q Consensus 269 ~~g~~~~A~~l~~~m~~-------~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~------g~-~pd~~t~~~li 334 (592)
..|++++|..+|++..+ ...+....++..+...|...|++++|...|++..+. +- +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 34555555555555443 122224566777888888888888888888877643 11 22345777888
Q ss_pred HHHHHcCCchHHHHHHHHHHHC------C-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc------CC-CCCHHHH
Q 007695 335 MAYVNAGQPKLGMSLVDMMITS------G-IERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE------EF-QPTLESC 400 (592)
Q Consensus 335 ~a~~~~g~~~~A~~l~~~m~~~------g-~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~------g~-~~~~~~~ 400 (592)
..|...|++++|...+.+.... . .+....++..+...|...|++++|...+++.... +- +....++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 8888888888888888877653 1 1223567778888888889998888888887765 11 2235678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc-------CCCCC-HHHHHHHHHHHHhcCC------HHHHHHHHHHHHHCCCCCC
Q 007695 401 TLLVEAYGQAGDPDQARSNFDYMIRL-------GHKPD-DRCTASMIAAYGKKNL------LDKALNLLLELEKDGFEPG 466 (592)
Q Consensus 401 ~~Li~~~~~~g~~~~A~~lf~~m~~~-------g~~pd-~~t~~~li~a~~~~g~------~~~A~~l~~~m~~~g~~p~ 466 (592)
..+...|...|++++|...|++.... ...+. ...|..+...+...+. +..+...+..... .....
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 251 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTV 251 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHH
Confidence 88888899999999999998887653 11122 2223333333332222 2222222222111 11223
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007695 467 PATYTVLVDWLGRLQLINEAEQLLGKISEL 496 (592)
Q Consensus 467 ~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 496 (592)
..++..+..+|...|++++|..++++..+.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 467788888999999999999999887653
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.99 E-value=4.1e-09 Score=102.72 Aligned_cols=226 Identities=10% Similarity=-0.003 Sum_probs=157.2
Q ss_pred HcCCchHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc------CC-CCCHHHHHHHH
Q 007695 339 NAGQPKLGMSLVDMMITS-------GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE------EF-QPTLESCTLLV 404 (592)
Q Consensus 339 ~~g~~~~A~~l~~~m~~~-------g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~------g~-~~~~~~~~~Li 404 (592)
..|++++|+.++++..+. ..+....++..+...|...|++++|...+.+.... +- +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 467777777777776652 22334677889999999999999999999998765 21 22367889999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHc-----CC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CHHHH
Q 007695 405 EAYGQAGDPDQARSNFDYMIRL-----GH-KP-DDRCTASMIAAYGKKNLLDKALNLLLELEKD------GFEP-GPATY 470 (592)
Q Consensus 405 ~~~~~~g~~~~A~~lf~~m~~~-----g~-~p-d~~t~~~li~a~~~~g~~~~A~~l~~~m~~~------g~~p-~~~ty 470 (592)
..|...|++++|...|.+.... +. .| ...++..+...|...|++++|...|++..+. +..| ...++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999999988764 11 12 3567788888999999999999999998764 1123 34678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc-------CCCC-CHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHcCCCCC
Q 007695 471 TVLVDWLGRLQLINEAEQLLGKISEL-------GEAP-PFKIQVSLCDMYARAGI------EKKALQALGFLEAKKEQMG 536 (592)
Q Consensus 471 ~~li~~~~~~g~~~~A~~l~~~m~~~-------g~~p-~~~~~~~Li~~~~~~g~------~~~A~~~~~~m~~~~~~~~ 536 (592)
..+..++...|++++|...++++.+. ...+ ....+..+...+...+. +..+...++..... .+..
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 251 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPTV 251 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHHH
Confidence 88999999999999999999988753 1111 22334444433433332 22222222222111 1112
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 007695 537 PDDFERIINGLLAGGFLQDAQRVHGLMEA 565 (592)
Q Consensus 537 ~~~~~~li~a~~~~g~~~~A~~l~~~m~~ 565 (592)
..++..+...|...|++++|.++|++..+
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44678889999999999999999998865
No 86
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.94 E-value=7.1e-06 Score=90.67 Aligned_cols=389 Identities=11% Similarity=0.030 Sum_probs=239.0
Q ss_pred chHHHHHHHHccc-ccCCchhHHHHHHhhc---CCCHhhHHHHHHHH-HhhC---HHHHHHHHHHHhhhCCCCCCHHHHH
Q 007695 190 KCKLITDKILSLE-KEEDPSPLLAEWKELL---QPSRIDWINLLDRL-REQN---TQLYFKVAELVLSEESFQTNVRDYS 261 (592)
Q Consensus 190 ~~~~~~~~l~~~~-~~g~~~~A~~~~~~~~---~p~~~t~~~lL~~~-~~~~---~~~~~~~~~~~~~~~~~~p~~~~y~ 261 (592)
........++.+. +.+.++.|..+|++++ ......|..-+..- ..++ .+.+..+++..+......|++..|.
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~ 143 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWL 143 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 3333455566555 6677888888887773 23344455555543 3345 6667777777665432347777777
Q ss_pred HHHHHHHHcCCH--------HHHHHHHHHHHH-CCC-CCC-HHHHHHHHHHHH---------HcCCHHHHHHHHHHHHhC
Q 007695 262 KLIDAHAKENCL--------EDAERILKKMNE-NGI-VPD-IVTSTVLVHMYS---------KAGNLDRAKEAFESLRSH 321 (592)
Q Consensus 262 ~Li~~~~~~g~~--------~~A~~l~~~m~~-~g~-~pd-~~~~~~Li~~~~---------~~g~~~~A~~~~~~m~~~ 321 (592)
.-+....+.+++ +...++|+.... .|. .|+ ...|...+.... ..++++.+..+|+..+..
T Consensus 144 ~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~i 223 (679)
T 4e6h_A 144 SYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQ 223 (679)
T ss_dssp HHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhC
Confidence 777666665543 334467776543 455 443 456666665433 234567778888887753
Q ss_pred CCCCCHHHHHHHHHHHHHcCC-------------chHHHHHHHHHHH--CCCC---------------C-----C---HH
Q 007695 322 GFQPDKKVYNSMIMAYVNAGQ-------------PKLGMSLVDMMIT--SGIE---------------R-----S---EE 363 (592)
Q Consensus 322 g~~pd~~t~~~li~a~~~~g~-------------~~~A~~l~~~m~~--~g~~---------------p-----~---~~ 363 (592)
....-..+|......-...+. ++.|...+.++.. .++. | + ..
T Consensus 224 P~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~ 303 (679)
T 4e6h_A 224 PMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLL 303 (679)
T ss_dssp CCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHH
Confidence 211122344333222211111 1223333433321 1110 1 0 13
Q ss_pred HHHHHHHHHHhCC-------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHcCCCCCHHHH
Q 007695 364 IYLALLRSFAQCG-------DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQAR-SNFDYMIRLGHKPDDRCT 435 (592)
Q Consensus 364 t~~~Ll~~~~~~g-------~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~-~lf~~m~~~g~~pd~~t~ 435 (592)
.|...+..--..+ ..+.+..+|++....- +-+...|...+..+.+.|+.++|. .+|+..... ++.+...|
T Consensus 304 lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lw 381 (679)
T 4e6h_A 304 IWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLA 381 (679)
T ss_dssp HHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHH
T ss_pred HHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHH
Confidence 3444444333222 1233456677776653 557888888888888999999996 999998874 33355566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC---------CCCC------------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007695 436 ASMIAAYGKKNLLDKALNLLLELEKDG---------FEPG------------PATYTVLVDWLGRLQLINEAEQLLGKIS 494 (592)
Q Consensus 436 ~~li~a~~~~g~~~~A~~l~~~m~~~g---------~~p~------------~~ty~~li~~~~~~g~~~~A~~l~~~m~ 494 (592)
...+...-+.|+++.|..+|+.+.... -.|+ ...|...+....+.|.++.|..+|....
T Consensus 382 l~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~ 461 (679)
T 4e6h_A 382 FSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCR 461 (679)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 777888888999999999999987631 0132 2467778888888999999999999998
Q ss_pred hcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH-
Q 007695 495 ELGEAPPFKIQVSLCDMYARAG-IEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASE- 572 (592)
Q Consensus 495 ~~g~~p~~~~~~~Li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~g~~pd~- 572 (592)
+....+...+|...+..-.+.+ +.+.|.++|+...+. .+-++..|..++......|+.+.|..+|++.......++.
T Consensus 462 ~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~ 540 (679)
T 4e6h_A 462 RLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLL 540 (679)
T ss_dssp HTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHH
T ss_pred HhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHH
Confidence 7611223445554444444444 589999999998886 4556777888888888899999999999999876443323
Q ss_pred -HHHHHHHhh
Q 007695 573 -RLKVALISS 581 (592)
Q Consensus 573 -~~~~~l~~~ 581 (592)
.++...+..
T Consensus 541 ~~lw~~~~~f 550 (679)
T 4e6h_A 541 KMIFQKVIFF 550 (679)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 444444443
No 87
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.91 E-value=1e-07 Score=81.09 Aligned_cols=125 Identities=20% Similarity=0.216 Sum_probs=51.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC
Q 007695 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376 (592)
Q Consensus 297 ~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g 376 (592)
.+...+...|++++|..+|+++.+.. +.+..++..+...+...|++++|..+++++...+ +.+...+..+...+...|
T Consensus 6 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 83 (136)
T 2fo7_A 6 NLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQG 83 (136)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHhc
Confidence 33344444444444444444443321 2233334444444444444444444444443322 113333444444444444
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007695 377 DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMI 424 (592)
Q Consensus 377 ~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~ 424 (592)
++++|...++.+.... +.+..++..+...|.+.|++++|...|+++.
T Consensus 84 ~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 84 DYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 4444444444444332 2233444444444444444444444444443
No 88
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.84 E-value=2.5e-07 Score=78.62 Aligned_cols=128 Identities=14% Similarity=0.037 Sum_probs=71.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 007695 435 TASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYAR 514 (592)
Q Consensus 435 ~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~ 514 (592)
|..+...|...|++++|..++.++.+.. +.+...+..+...+...|++++|...++++...... +...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHH
Confidence 3344444555555555555555544432 223444555555555555555555555555544322 45555666666666
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 007695 515 AGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEA 565 (592)
Q Consensus 515 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~ 565 (592)
.|++++|...++++.... +.+...+..+...+...|++++|.+.++++..
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 666666666666665542 23455566666666677777777776666654
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.81 E-value=2e-07 Score=92.51 Aligned_cols=55 Identities=15% Similarity=0.253 Sum_probs=29.1
Q ss_pred HHHHcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHHcCCchHHHHHHHHHHH
Q 007695 301 MYSKAGNLDRAKEAFESLRSH----GFQPD-KKVYNSMIMAYVNAGQPKLGMSLVDMMIT 355 (592)
Q Consensus 301 ~~~~~g~~~~A~~~~~~m~~~----g~~pd-~~t~~~li~a~~~~g~~~~A~~l~~~m~~ 355 (592)
.|...|++++|...|.+.... |-+++ ..+|+.+..+|.+.|++++|+..|++.+.
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~ 105 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQ 105 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 455566666666666655421 21111 34555566666666666666665555543
No 90
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.80 E-value=4.1e-07 Score=90.22 Aligned_cols=173 Identities=12% Similarity=-0.032 Sum_probs=90.1
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhCCCHHHH
Q 007695 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS----GIERS-EEIYLALLRSFAQCGDVRGA 381 (592)
Q Consensus 307 ~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~Ll~~~~~~g~~~~A 381 (592)
++++|...|++. ...|...|++++|...|.+.... |-.++ ..+|+.+..+|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 477777777665 33566778888888887776542 21111 35667777777777777777
Q ss_pred HHHHHHHHHcCC---CC--CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCCHHH
Q 007695 382 GQITNIMRIEEF---QP--TLESCTLLVEAYGQA-GDPDQARSNFDYMIRLGHK-PD----DRCTASMIAAYGKKNLLDK 450 (592)
Q Consensus 382 ~~~~~~m~~~g~---~~--~~~~~~~Li~~~~~~-g~~~~A~~lf~~m~~~g~~-pd----~~t~~~li~a~~~~g~~~~ 450 (592)
...+++...... .+ -..+++.+...|... |++++|+..|++....... .+ ..++..+...|.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 777766654210 00 023455555555554 6666666655555442110 00 2234444555555555555
Q ss_pred HHHHHHHHHHCCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007695 451 ALNLLLELEKDGFEPGP------ATYTVLVDWLGRLQLINEAEQLLGKIS 494 (592)
Q Consensus 451 A~~l~~~m~~~g~~p~~------~ty~~li~~~~~~g~~~~A~~l~~~m~ 494 (592)
|+..|++..+....... ..|..+..++...|++++|...+++..
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 226 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQ 226 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55555555443211110 133344444444455555555554443
No 91
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.77 E-value=2.1e-06 Score=84.97 Aligned_cols=244 Identities=13% Similarity=0.026 Sum_probs=138.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCc
Q 007695 264 IDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQP 343 (592)
Q Consensus 264 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~ 343 (592)
|+-..=.|++..++.-...+ ........-..+.++|...|++... ..-.|....+..+...+ ..+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~---~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKF---SKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTS---SCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT--
T ss_pred HHHHHHhhHHHHHHHHHHhc---CccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc--
Confidence 33444467777777632222 1122233333455777777776532 11134443433333333 211
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007695 344 KLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF-QPTLESCTLLVEAYGQAGDPDQARSNFDY 422 (592)
Q Consensus 344 ~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~Li~~~~~~g~~~~A~~lf~~ 422 (592)
|+..|++....+ .++..++..+..++...|++++|++++.+....+- .-+...+..++..|.+.|+.+.|.+.++.
T Consensus 85 --a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 85 --NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp --CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 566666666544 44555666777777777777777777777655441 13566677777777777777777777777
Q ss_pred HHHcCCCC-----CHHHHHHHHHHH--HhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007695 423 MIRLGHKP-----DDRCTASMIAAY--GKKN--LLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493 (592)
Q Consensus 423 m~~~g~~p-----d~~t~~~li~a~--~~~g--~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m 493 (592)
|.+. .| +..+...+..++ ...| ++.+|+.+|+++.+. .|+..+-..++.++.+.|++++|...++.+
T Consensus 162 ~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 162 YTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7663 34 244455555552 2223 677777777777553 344233333333677777777777777765
Q ss_pred HhcC---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 007695 494 SELG---------EAPPFKIQVSLCDMYARAGIEKKALQALGFLEAK 531 (592)
Q Consensus 494 ~~~g---------~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~ 531 (592)
.+.- -.-++.++..+|..+...|+ .|.+++.++.+.
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 4420 01255566555555555665 667777777664
No 92
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.77 E-value=3.1e-07 Score=89.23 Aligned_cols=186 Identities=11% Similarity=0.043 Sum_probs=95.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CCCHHH
Q 007695 255 TNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPD---IVTSTVLVHMYSKAGNLDRAKEAFESLRSHGF--QPDKKV 329 (592)
Q Consensus 255 p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd---~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~--~pd~~t 329 (592)
.+...+-.+...+.+.|++++|...|+.+.+.... + ...+..+..+|.+.|++++|...|++..+..- +....+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 34555556666666777777777777776664211 2 45566666667777777777777776665310 111345
Q ss_pred HHHHHHHHHH--------cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 007695 330 YNSMIMAYVN--------AGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCT 401 (592)
Q Consensus 330 ~~~li~a~~~--------~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 401 (592)
+..+..++.. .|++++|+..|++.+..... +......+. .+..+... ....+.
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~--------------~~~~~~~~----~~~~~~ 152 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQ--------------KIRELRAK----LARKQY 152 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHH--------------HHHHHHHH----HHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHH--------------HHHHHHHH----HHHHHH
Confidence 5556666666 66666666666666654211 111111110 00000000 011134
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHH
Q 007695 402 LLVEAYGQAGDPDQARSNFDYMIRLGHKP--DDRCTASMIAAYGKK----------NLLDKALNLLLELEK 460 (592)
Q Consensus 402 ~Li~~~~~~g~~~~A~~lf~~m~~~g~~p--d~~t~~~li~a~~~~----------g~~~~A~~l~~~m~~ 460 (592)
.+...|.+.|++++|...|+++....+.. ....+..+..+|... |++++|...|+.+.+
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~ 223 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ 223 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH
Confidence 45556666666666666666665532211 123444455555544 555666666665554
No 93
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.77 E-value=3.4e-07 Score=85.91 Aligned_cols=76 Identities=12% Similarity=0.058 Sum_probs=36.8
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 007695 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQA 410 (592)
Q Consensus 333 li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~ 410 (592)
+..+|.+.|++++|+..|++.++... -+...+..+..+|...|++++|...|++..+.. +.+..++..+...|...
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAP-NNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 44445555555555555555544321 144445555555555555555555555555443 33444455554444433
No 94
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.76 E-value=1.6e-06 Score=85.79 Aligned_cols=180 Identities=14% Similarity=0.051 Sum_probs=111.8
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 007695 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGI-ERSEEIYLALLRSFAQCGDVRGAGQITNIMR 389 (592)
Q Consensus 311 A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~ 389 (592)
|...|++....+ .++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 666677666554 45555666677777777777777777777765543 1256666777777777777777777777776
Q ss_pred HcCCCC-----CHHHHHHHHHH--HHHcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007695 390 IEEFQP-----TLESCTLLVEA--YGQAG--DPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEK 460 (592)
Q Consensus 390 ~~g~~~-----~~~~~~~Li~~--~~~~g--~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~ 460 (592)
+. .| +..+...|..+ ....| ++.+|..+|+++... .|+..+...++.++.+.|++++|...++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 65 34 24444555544 22233 677777777777553 24433334444467777777777777776543
Q ss_pred C-----C----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 007695 461 D-----G----FEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497 (592)
Q Consensus 461 ~-----g----~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g 497 (592)
. . -+-|+.++..+|......|+ +|.+++.++....
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 2 0 02245555566666666665 6777777777654
No 95
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.73 E-value=7e-06 Score=81.70 Aligned_cols=165 Identities=13% Similarity=0.072 Sum_probs=83.0
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC------
Q 007695 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPD--QARSNFDYMIRLGHKPDDRCTASMIAAYGKKNL------ 447 (592)
Q Consensus 376 g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~--~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~------ 447 (592)
+++++++.+++.+.... +.|-.+|+.-.-.+.+.|.++ ++++.++++.+..+. |...|+.-...+.+.+.
T Consensus 124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhh
Confidence 44555555555555444 445555555555555555554 555555555554332 44555544444444443
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHhcC--CCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007695 448 LDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLIN-EAEQLLGKISELG--EAPPFKIQVSLCDMYARAGIEKKALQA 524 (592)
Q Consensus 448 ~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~-~A~~l~~~m~~~g--~~p~~~~~~~Li~~~~~~g~~~~A~~~ 524 (592)
++++++.++.+.... +-|...++.+-..+.+.|+.. .+..+..++.+.+ -..+...+..+.+.|.+.|+.++|.++
T Consensus 202 ~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 202 IDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 555555555554432 234444544444455554422 2333444443322 122556666666666666777777777
Q ss_pred HHHHHHcCCCCCHHHHHHH
Q 007695 525 LGFLEAKKEQMGPDDFERI 543 (592)
Q Consensus 525 ~~~m~~~~~~~~~~~~~~l 543 (592)
++.+.++-.+.....|+..
T Consensus 281 ~~~l~~~~Dpir~~yW~~~ 299 (306)
T 3dra_A 281 YDLLKSKYNPIRSNFWDYQ 299 (306)
T ss_dssp HHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHhccChHHHHHHHHH
Confidence 7666653233344445443
No 96
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.73 E-value=4.5e-07 Score=85.04 Aligned_cols=169 Identities=12% Similarity=0.045 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHhCC
Q 007695 259 DYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTV----------------LVHMYSKAGNLDRAKEAFESLRSHG 322 (592)
Q Consensus 259 ~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~----------------Li~~~~~~g~~~~A~~~~~~m~~~g 322 (592)
.+-.....+.+.|++++|...|++..+.... +...|.. +..+|.+.|++++|...|++..+..
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALNID-RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 3444556678899999999999998875221 3455666 8899999999999999999998764
Q ss_pred CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHcCCCCCH--H
Q 007695 323 FQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGD--VRGAGQITNIMRIEEFQPTL--E 398 (592)
Q Consensus 323 ~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~--~~~A~~~~~~m~~~g~~~~~--~ 398 (592)
+.+..+|..+..+|...|++++|...|++.++... -+..++..+..+|...|+ ...+...+.... .|+. .
T Consensus 85 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 158 (208)
T 3urz_A 85 -PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEA-DNLAANIFLGNYYYLTAEQEKKKLETDYKKLS----SPTKMQY 158 (208)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCCHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh----CCCchhH
Confidence 55788999999999999999999999999998653 368888888888876654 334455555543 3333 3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 007695 399 SCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTA 436 (592)
Q Consensus 399 ~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~ 436 (592)
.+..+..++...|++++|...|++..+. .|+.....
T Consensus 159 a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~ 194 (208)
T 3urz_A 159 ARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQK 194 (208)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHH
Confidence 4445566677788889999998888763 46654433
No 97
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.73 E-value=5.3e-07 Score=87.51 Aligned_cols=183 Identities=10% Similarity=-0.018 Sum_probs=127.2
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CC-CHHHHHHHHHH
Q 007695 225 WINLLDRLREQNTQLYFKVAELVLSEESFQTN-VRDYSKLIDAHAKENCLEDAERILKKMNENGI-VP-DIVTSTVLVHM 301 (592)
Q Consensus 225 ~~~lL~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~-~p-d~~~~~~Li~~ 301 (592)
|..-...+..++.+.+...+...+...+-.+. ...+..+..+|.+.|++++|...|++..+... .| ....+..+..+
T Consensus 19 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~ 98 (261)
T 3qky_A 19 FERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMC 98 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHH
Confidence 33334445788999999999999876432222 66788899999999999999999999988632 12 24567788888
Q ss_pred HHH--------cCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007695 302 YSK--------AGNLDRAKEAFESLRSHGFQPD-KKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372 (592)
Q Consensus 302 ~~~--------~g~~~~A~~~~~~m~~~g~~pd-~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~ 372 (592)
+.. .|++++|...|+++.+. .|+ ......+.. +..+... ....+..+...|
T Consensus 99 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~--------------~~~~~~~----~~~~~~~la~~~ 158 (261)
T 3qky_A 99 YYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQK--------------IRELRAK----LARKQYEAARLY 158 (261)
T ss_dssp HHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHH--------------HHHHHHH----HHHHHHHHHHHH
T ss_pred HHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHH--------------HHHHHHH----HHHHHHHHHHHH
Confidence 888 99999999999999875 343 223222211 1111100 012356677778
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHcC
Q 007695 373 AQCGDVRGAGQITNIMRIEEFQP--TLESCTLLVEAYGQA----------GDPDQARSNFDYMIRLG 427 (592)
Q Consensus 373 ~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~Li~~~~~~----------g~~~~A~~lf~~m~~~g 427 (592)
.+.|++++|...|+.+....... ....+..+..+|... |++++|...|+++....
T Consensus 159 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 159 ERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 88888888888888887663111 245677777777765 78888888888888753
No 98
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.69 E-value=1.7e-06 Score=81.38 Aligned_cols=176 Identities=16% Similarity=0.139 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC----CchHHHHHH
Q 007695 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAG----QPKLGMSLV 350 (592)
Q Consensus 275 ~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g----~~~~A~~l~ 350 (592)
+|.+.|++..+.| +...+..|...|...+++++|...|++..+.| +...+..|...|.. + ++++|..+|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3555566655543 55666666666666666666666666666644 55566666666655 4 566666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHH----cCCHHHHHHHHH
Q 007695 351 DMMITSGIERSEEIYLALLRSFAQ----CGDVRGAGQITNIMRIEEFQ-PTLESCTLLVEAYGQ----AGDPDQARSNFD 421 (592)
Q Consensus 351 ~~m~~~g~~p~~~t~~~Ll~~~~~----~g~~~~A~~~~~~m~~~g~~-~~~~~~~~Li~~~~~----~g~~~~A~~lf~ 421 (592)
++..+.| +...+..|...|.. .+++++|...|+.....+.. .+..++..|..+|.. .+++++|...|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 6666554 45556666666655 56666666666666655410 015566666666666 556666666666
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHCC
Q 007695 422 YMIRLGHKPDDRCTASMIAAYGKK-N-----LLDKALNLLLELEKDG 462 (592)
Q Consensus 422 ~m~~~g~~pd~~t~~~li~a~~~~-g-----~~~~A~~l~~~m~~~g 462 (592)
+....+ .+...+..+-..|... | +.++|..+|+...+.|
T Consensus 154 ~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 665541 1233444444444432 2 5666666666655544
No 99
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.68 E-value=7.8e-05 Score=79.56 Aligned_cols=358 Identities=12% Similarity=0.034 Sum_probs=224.8
Q ss_pred chHHHHHHHHcccccCCchhHHHHHHhhc--CCCHhhHHHHHHHHHhhC--HHHHHHHHHHHhhhCCCC-CCHHHHHHHH
Q 007695 190 KCKLITDKILSLEKEEDPSPLLAEWKELL--QPSRIDWINLLDRLREQN--TQLYFKVAELVLSEESFQ-TNVRDYSKLI 264 (592)
Q Consensus 190 ~~~~~~~~l~~~~~~g~~~~A~~~~~~~~--~p~~~t~~~lL~~~~~~~--~~~~~~~~~~~~~~~~~~-p~~~~y~~Li 264 (592)
..+.++...+..+-.|+++.|..+|++.+ -|+...|..-+.-....+ .+.....++..+..-|.. .+...|...+
T Consensus 13 ~aR~vyer~l~~~P~~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi 92 (493)
T 2uy1_A 13 SPSAIMEHARRLYMSKDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYI 92 (493)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHH
Confidence 34455566666653488999999999985 489999998888764433 233444555555555543 3667777777
Q ss_pred HHHH----HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-------------HcCCHHHHHHHHHHHHhCCCCCCH
Q 007695 265 DAHA----KENCLEDAERILKKMNENGIVPDIVTSTVLVHMYS-------------KAGNLDRAKEAFESLRSHGFQPDK 327 (592)
Q Consensus 265 ~~~~----~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~-------------~~g~~~~A~~~~~~m~~~g~~pd~ 327 (592)
..+. ..++++.+.++|++.......--...|......-. ..+.+..|..+++.+...--..+.
T Consensus 93 ~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~ 172 (493)
T 2uy1_A 93 EEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSV 172 (493)
T ss_dssp HHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSH
T ss_pred HHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccH
Confidence 7654 35678999999999988421111122222211110 112334455555554421001244
Q ss_pred HHHHHHHHHHHHcC--C-----chHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Q 007695 328 KVYNSMIMAYVNAG--Q-----PKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESC 400 (592)
Q Consensus 328 ~t~~~li~a~~~~g--~-----~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 400 (592)
..|...+..-...+ - ...+..+|++++.. .+.+...|...+..+.+.|+.+.|..++++.... +.+...|
T Consensus 173 ~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~ 249 (493)
T 2uy1_A 173 KNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLS 249 (493)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHH
T ss_pred HHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHH
Confidence 56666555533221 1 23567889998875 3456888999999999999999999999999988 4444433
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC---------CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 007695 401 TLLVEAYGQAGDPDQARSNFDYMIRLG---------HKP---DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPA 468 (592)
Q Consensus 401 ~~Li~~~~~~g~~~~A~~lf~~m~~~g---------~~p---d~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ 468 (592)
.. |....+.++ +++.+.+.- ..+ ....|...+..+.+.+..+.|..+|... +.. ..+..
T Consensus 250 ~~----y~~~~e~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~ 320 (493)
T 2uy1_A 250 LY----YGLVMDEEA---VYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPH 320 (493)
T ss_dssp HH----HHHHTTCTH---HHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHH
T ss_pred HH----HHhhcchhH---HHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChH
Confidence 32 222222122 133332210 001 1244556666666778899999999998 321 23444
Q ss_pred HHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007695 469 TYTVLVDWLGR-LQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547 (592)
Q Consensus 469 ty~~li~~~~~-~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~ 547 (592)
.|......-.. .++.+.|..+|+...+.-.. +...+...++...+.|+.+.|..+|+.+. .....|...+.--
T Consensus 321 v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~-~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE 394 (493)
T 2uy1_A 321 VFIYCAFIEYYATGSRATPYNIFSSGLLKHPD-STLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYE 394 (493)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHH
Confidence 55433322222 33699999999998876433 45667778888889999999999999973 2467788888877
Q ss_pred HhCCCHHHHHHHHHHHHH
Q 007695 548 LAGGFLQDAQRVHGLMEA 565 (592)
Q Consensus 548 ~~~g~~~~A~~l~~~m~~ 565 (592)
...|+.+.+.++++++..
T Consensus 395 ~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 395 FMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHSCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 888999999998888774
No 100
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.66 E-value=1.8e-07 Score=104.49 Aligned_cols=173 Identities=10% Similarity=-0.004 Sum_probs=137.0
Q ss_pred HHcCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 007695 268 AKENCLEDAERILKKMN--------ENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVN 339 (592)
Q Consensus 268 ~~~g~~~~A~~l~~~m~--------~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~ 339 (592)
...|++++|++.|++.. +.. +.+...+..+...|...|++++|...|++..+.. +.+...|..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 67889999999999987 432 3366778888899999999999999999988754 4577889999999999
Q ss_pred cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007695 340 AGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSN 419 (592)
Q Consensus 340 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~l 419 (592)
.|++++|+..|++..+... -+...+..+..+|.+.|++++ ...|++..+.+ +.+...|..+..+|.+.|++++|...
T Consensus 480 ~g~~~~A~~~~~~al~l~P-~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFP-GELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999888643 267788888889999999999 99999888776 56788888999999999999999999
Q ss_pred HHHHHHcCCCCC-HHHHHHHHHHHHhcCC
Q 007695 420 FDYMIRLGHKPD-DRCTASMIAAYGKKNL 447 (592)
Q Consensus 420 f~~m~~~g~~pd-~~t~~~li~a~~~~g~ 447 (592)
|++..+. .|+ ...+..+..++...++
T Consensus 557 ~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 9887764 344 4566666666655444
No 101
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.65 E-value=2.3e-07 Score=103.58 Aligned_cols=174 Identities=13% Similarity=-0.022 Sum_probs=113.5
Q ss_pred HhCCCHHHHHHHHHHHH--------HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 007695 373 AQCGDVRGAGQITNIMR--------IEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGK 444 (592)
Q Consensus 373 ~~~g~~~~A~~~~~~m~--------~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~ 444 (592)
...|++++|.+.+++.. ... +.+...+..+...|.+.|++++|...|++..+.... +...|..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 56677777777777766 332 445566777777777777777777777777764332 55666667777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007695 445 KNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQA 524 (592)
Q Consensus 445 ~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~ 524 (592)
.|++++|+..|++..+.. +-+...+..+..++.+.|++++ ...|++..+.... +...|..+..+|.+.|++++|...
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 777777777777766632 2235666677777777777777 7777777766544 666777777777777777777777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCCC
Q 007695 525 LGFLEAKKEQMGPDDFERIINGLLAGGF 552 (592)
Q Consensus 525 ~~~m~~~~~~~~~~~~~~li~a~~~~g~ 552 (592)
|++..+.+ +-+...|..+..++...|+
T Consensus 557 ~~~al~l~-P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTS-RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTS-TTHHHHHHHHHHHTC----
T ss_pred HHhhcccC-cccHHHHHHHHHHHHccCC
Confidence 77765542 1234456666666655444
No 102
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.64 E-value=1.2e-05 Score=79.89 Aligned_cols=228 Identities=8% Similarity=-0.004 Sum_probs=176.6
Q ss_pred HcCC-chHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----HHc-
Q 007695 339 NAGQ-PKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG--DVRGAGQITNIMRIEEFQPTLESCTLLVEAY----GQA- 410 (592)
Q Consensus 339 ~~g~-~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~----~~~- 410 (592)
+.|. .++|+.+++.++..+.. +...|+.--..+...+ ++++++..++.+.... +-+..+|+.-...+ ...
T Consensus 44 ~~~e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 44 KAEEYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTT
T ss_pred HcCCCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhcc
Confidence 3444 45788888888876433 5666777777777777 8999999999998876 55667777665555 555
Q ss_pred --CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC----
Q 007695 411 --GDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLD--KALNLLLELEKDGFEPGPATYTVLVDWLGRLQL---- 482 (592)
Q Consensus 411 --g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~--~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~---- 482 (592)
+++++++.+++.+....++ +..+|+.-..++.+.|.++ +++.+++.+.+.. .-|...|+.-...+.+.+.
T Consensus 122 ~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp TCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCH
T ss_pred ccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchh
Confidence 7899999999999987654 8889988888888889888 9999999998864 3466677666666666666
Q ss_pred --HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHcC--CCCCHHHHHHHHHHHHhCCCHHHHH
Q 007695 483 --INEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKK-ALQALGFLEAKK--EQMGPDDFERIINGLLAGGFLQDAQ 557 (592)
Q Consensus 483 --~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~-A~~~~~~m~~~~--~~~~~~~~~~li~a~~~~g~~~~A~ 557 (592)
++++.+.+++++...+. |...|+.+...+.+.|+... +..+...+...+ ...++..+..+...|.+.|+.++|+
T Consensus 200 ~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~ 278 (306)
T 3dra_A 200 NTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 89999999999988777 99999999999999888544 455666555432 2447788899999999999999999
Q ss_pred HHHHHHHHCCCCCCH
Q 007695 558 RVHGLMEAQGFAASE 572 (592)
Q Consensus 558 ~l~~~m~~~g~~pd~ 572 (592)
++++.+.+. +.|-.
T Consensus 279 ~~~~~l~~~-~Dpir 292 (306)
T 3dra_A 279 TVYDLLKSK-YNPIR 292 (306)
T ss_dssp HHHHHHHHT-TCGGG
T ss_pred HHHHHHHhc-cChHH
Confidence 999998753 44444
No 103
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.64 E-value=3.9e-06 Score=79.56 Aligned_cols=187 Identities=16% Similarity=0.074 Sum_probs=123.2
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHHH
Q 007695 361 SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ-P-TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD--RCTA 436 (592)
Q Consensus 361 ~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~-~-~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~--~t~~ 436 (592)
+...+..+...+.+.|++++|...|+.+...... + ....+..+..+|.+.|++++|...|++.....+.... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 4556677778888899999999999998876311 1 1467788889999999999999999998875443221 2344
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 007695 437 SMIAAYGK------------------KNLLDKALNLLLELEKDGFEPGP-ATYTVLVDWLGRLQLINEAEQLLGKISELG 497 (592)
Q Consensus 437 ~li~a~~~------------------~g~~~~A~~l~~~m~~~g~~p~~-~ty~~li~~~~~~g~~~~A~~l~~~m~~~g 497 (592)
.+..++.. .|++++|...|+++.+. .|+. ......... ..+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l----------~~~~~~~---- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRL----------VFLKDRL---- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHH----------HHHHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHH----------HHHHHHH----
Confidence 44444443 45666777777666653 2321 111111000 0000000
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 007695 498 EAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQM--GPDDFERIINGLLAGGFLQDAQRVHGLMEAQG 567 (592)
Q Consensus 498 ~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~g 567 (592)
......+...|.+.|++++|...|+.+.+..... .+..+..+..+|.+.|+.++|.+.++.+...+
T Consensus 147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 0112356678889999999999999998763221 12568888999999999999999999988763
No 104
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.64 E-value=2.1e-06 Score=80.78 Aligned_cols=140 Identities=12% Similarity=0.061 Sum_probs=68.6
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC----CHHHHHHHHH
Q 007695 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG----DVRGAGQITN 386 (592)
Q Consensus 311 A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g----~~~~A~~~~~ 386 (592)
|.+.|++..+.| +..++..+...|...+++++|+.+|++..+.| +...+..|...|.. + ++++|...|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 445555555443 55555555555555566666666666555544 44455555555544 3 5555555555
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHHH
Q 007695 387 IMRIEEFQPTLESCTLLVEAYGQ----AGDPDQARSNFDYMIRLGHK-PDDRCTASMIAAYGK----KNLLDKALNLLLE 457 (592)
Q Consensus 387 ~m~~~g~~~~~~~~~~Li~~~~~----~g~~~~A~~lf~~m~~~g~~-pd~~t~~~li~a~~~----~g~~~~A~~l~~~ 457 (592)
...+.| +..++..|...|.. .+++++|...|++....|.. .+...+..+-..|.. .+++++|+.+|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 554433 34444455544444 44555555555554443221 013334444444444 3444444444444
Q ss_pred HHH
Q 007695 458 LEK 460 (592)
Q Consensus 458 m~~ 460 (592)
..+
T Consensus 155 A~~ 157 (212)
T 3rjv_A 155 SSS 157 (212)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 105
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.63 E-value=1.1e-06 Score=95.77 Aligned_cols=153 Identities=10% Similarity=-0.037 Sum_probs=89.4
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHH
Q 007695 271 NCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLV 350 (592)
Q Consensus 271 g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~ 350 (592)
|++++|.+.|++..+... -+...|..+...|...|++++|.+.|++..+.. +.+..+|..+..+|...|++++|.+.+
T Consensus 3 g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 566667777766655421 245666667777777777777777777766553 335666667777777777777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHcC
Q 007695 351 DMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQA---GDPDQARSNFDYMIRLG 427 (592)
Q Consensus 351 ~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~---g~~~~A~~lf~~m~~~g 427 (592)
++..+.. +.+...+..+..+|.+.|++++|.+.+++..+.. +.+...+..+...+... |++++|...|++..+.+
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 7766643 2256666677777777777777777777766654 44566666677777777 77777777777666643
No 106
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.62 E-value=3.8e-07 Score=83.00 Aligned_cols=59 Identities=7% Similarity=0.053 Sum_probs=30.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007695 261 SKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRS 320 (592)
Q Consensus 261 ~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~ 320 (592)
..+...+.+.|++++|...|++..+.. +-+...+..+...+...|++++|...|+....
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~ 68 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPL 68 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh
Confidence 344445555555555555555544321 11444555555555555555555555555543
No 107
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.61 E-value=3.2e-06 Score=80.14 Aligned_cols=185 Identities=14% Similarity=0.075 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----HHH
Q 007695 257 VRDYSKLIDAHAKENCLEDAERILKKMNENGIV-PD-IVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDK----KVY 330 (592)
Q Consensus 257 ~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~-pd-~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~----~t~ 330 (592)
...+..+...+.+.|++++|...|+++.+.... |. ...+..+..+|.+.|++++|...|+++.+. .|+. .++
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHH
Confidence 445556677788889999999999998875322 11 356777888889999999999999988765 2331 244
Q ss_pred HHHHHHHHH------------------cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 007695 331 NSMIMAYVN------------------AGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392 (592)
Q Consensus 331 ~~li~a~~~------------------~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g 392 (592)
..+..++.. .|++++|...|+++++.... +..+....... ..+...+
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l----------~~~~~~~---- 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRL----------VFLKDRL---- 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHH----------HHHHHHH----
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHH----------HHHHHHH----
Confidence 444455543 35566666666666654211 11111111100 0000000
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007695 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD--DRCTASMIAAYGKKNLLDKALNLLLELEKDG 462 (592)
Q Consensus 393 ~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd--~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g 462 (592)
......+...|.+.|++++|...|+++.+..+... ...+..+..+|.+.|+.++|...++.+...+
T Consensus 147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 01123567788899999999999999887533211 2467778889999999999999999887754
No 108
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.59 E-value=9.6e-07 Score=87.40 Aligned_cols=163 Identities=9% Similarity=0.032 Sum_probs=84.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-H
Q 007695 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM-I 334 (592)
Q Consensus 256 ~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l-i 334 (592)
+...+..+...+.+.|++++|...|++..+.... +...+..+...+...|++++|...|++.... .|+....... .
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHH
Confidence 3344555555556666666666666665554221 4555555666666666666666666655543 2333322222 2
Q ss_pred HHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCC
Q 007695 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT--LESCTLLVEAYGQAGD 412 (592)
Q Consensus 335 ~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~Li~~~~~~g~ 412 (592)
..+...++.+.|...+++..... +.+...+..+...|...|++++|...|.++.... +.+ ...+..++..|...|+
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~-p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXD-LTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc-cccccchHHHHHHHHHHHcCC
Confidence 22444555555555555555543 2245555555555555666666665555555543 111 4455555555555555
Q ss_pred HHHHHHHHHHH
Q 007695 413 PDQARSNFDYM 423 (592)
Q Consensus 413 ~~~A~~lf~~m 423 (592)
.++|...|++.
T Consensus 271 ~~~a~~~~r~a 281 (287)
T 3qou_A 271 GDALASXYRRQ 281 (287)
T ss_dssp TCHHHHHHHHH
T ss_pred CCcHHHHHHHH
Confidence 55555555443
No 109
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.59 E-value=1.7e-06 Score=94.36 Aligned_cols=154 Identities=14% Similarity=0.035 Sum_probs=119.9
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 007695 305 AGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQI 384 (592)
Q Consensus 305 ~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~ 384 (592)
.|++++|...|++..+.. +.+...|..+...|...|++++|.+.|++..+.. +-+..++..+..+|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999988663 4468899999999999999999999999999864 33688999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHC
Q 007695 385 TNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKK---NLLDKALNLLLELEKD 461 (592)
Q Consensus 385 ~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~---g~~~~A~~l~~~m~~~ 461 (592)
+++..+.. +.+...+..+..+|.+.|++++|...|++..+.... +...+..+..+|... |+.++|...+++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99999876 567889999999999999999999999999886443 577888899999999 9999999999998775
Q ss_pred C
Q 007695 462 G 462 (592)
Q Consensus 462 g 462 (592)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 3
No 110
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.58 E-value=1.8e-06 Score=85.35 Aligned_cols=167 Identities=7% Similarity=-0.059 Sum_probs=134.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHH-
Q 007695 289 VPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA- 367 (592)
Q Consensus 289 ~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~- 367 (592)
+.+...+..+...+...|++++|...|++..+.. +-+...+..+...+.+.|++++|...+++..... |+......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 3456677788888999999999999999988764 4577889999999999999999999999887653 45443333
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcC
Q 007695 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP-DDRCTASMIAAYGKKN 446 (592)
Q Consensus 368 Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~p-d~~t~~~li~a~~~~g 446 (592)
....+...++.+.|...+++..... +.+...+..+...|...|++++|...|.++....+.. +...+..+...|...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 2333667777888899999888876 6678999999999999999999999999998864432 2678888999999999
Q ss_pred CHHHHHHHHHHHH
Q 007695 447 LLDKALNLLLELE 459 (592)
Q Consensus 447 ~~~~A~~l~~~m~ 459 (592)
+.++|...|++..
T Consensus 270 ~~~~a~~~~r~al 282 (287)
T 3qou_A 270 TGDALASXYRRQL 282 (287)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 9999998887754
No 111
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.56 E-value=1.8e-07 Score=82.94 Aligned_cols=81 Identities=11% Similarity=0.100 Sum_probs=34.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC
Q 007695 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376 (592)
Q Consensus 297 ~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g 376 (592)
.+...|.+.|++++|.+.|++..+.. +-+..+|..+..+|.+.|++++|+..|++.++... -+..++..+...|.+.|
T Consensus 36 ~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~ 113 (150)
T 4ga2_A 36 YFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVECYRRSVELNP-TQKDLVLKIAELLCKND 113 (150)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcC
Confidence 34444444444444444444444332 22344444444444444444444444444443321 13334444444444444
Q ss_pred CHH
Q 007695 377 DVR 379 (592)
Q Consensus 377 ~~~ 379 (592)
+++
T Consensus 114 ~~~ 116 (150)
T 4ga2_A 114 VTD 116 (150)
T ss_dssp SSS
T ss_pred ChH
Confidence 443
No 112
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.56 E-value=6.9e-07 Score=81.22 Aligned_cols=159 Identities=13% Similarity=0.034 Sum_probs=84.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHHc
Q 007695 402 LLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDW-LGRL 480 (592)
Q Consensus 402 ~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~-~~~~ 480 (592)
.+...+.+.|++++|...|++.....+. +...+..+..+|...|++++|+..|+..... .|+...+..+... +...
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHhh
Confidence 3344455555555555555544432221 3344445555555555555555555544332 1222222111111 1111
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCCHHHHHHH
Q 007695 481 QLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQM-GPDDFERIINGLLAGGFLQDAQRV 559 (592)
Q Consensus 481 g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~a~~~~g~~~~A~~l 559 (592)
+....+...+++..+.... +...+..+...+...|++++|...|+++......+ ++..+..+...|...|+.++|...
T Consensus 88 ~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~ 166 (176)
T 2r5s_A 88 AAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK 166 (176)
T ss_dssp HTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred cccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence 1222355666666655433 56677777777777777777777777776654322 244666777777777777777777
Q ss_pred HHHHH
Q 007695 560 HGLME 564 (592)
Q Consensus 560 ~~~m~ 564 (592)
|++..
T Consensus 167 y~~al 171 (176)
T 2r5s_A 167 YRRQL 171 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76654
No 113
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.55 E-value=3e-06 Score=84.58 Aligned_cols=160 Identities=9% Similarity=-0.047 Sum_probs=78.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHHHCC---CCC--CHHHHHHH
Q 007695 299 VHMYSKAGNLDRAKEAFESLRSH----GFQP-DKKVYNSMIMAYVNAGQPKLGMSLVDMMITSG---IER--SEEIYLAL 368 (592)
Q Consensus 299 i~~~~~~g~~~~A~~~~~~m~~~----g~~p-d~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g---~~p--~~~t~~~L 368 (592)
...|...|++++|...|.+.... +-.+ -..+|+.+...|...|++++|+..|++..+.- -.+ -..++..+
T Consensus 43 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 122 (307)
T 2ifu_A 43 AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRA 122 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44566667777777666665432 1000 12356666666666666666666666554321 011 12344555
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHH
Q 007695 369 LRSFAQCGDVRGAGQITNIMRIEEFQP-----TLESCTLLVEAYGQAGDPDQARSNFDYMIRL----GHKPD-DRCTASM 438 (592)
Q Consensus 369 l~~~~~~g~~~~A~~~~~~m~~~g~~~-----~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~----g~~pd-~~t~~~l 438 (592)
...|.. |++++|...|++.....-.. ...+++.+...|.+.|++++|...|++.... +..+. ..++..+
T Consensus 123 g~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 201 (307)
T 2ifu_A 123 GKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQ 201 (307)
T ss_dssp HHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence 555555 66666666555554321000 0234555555555555555555555555442 10000 1133334
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 007695 439 IAAYGKKNLLDKALNLLLELE 459 (592)
Q Consensus 439 i~a~~~~g~~~~A~~l~~~m~ 459 (592)
..++...|++++|...|++..
T Consensus 202 g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 202 VLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHh
Confidence 444444555555555555544
No 114
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.54 E-value=3.3e-07 Score=81.21 Aligned_cols=143 Identities=8% Similarity=-0.059 Sum_probs=88.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHH
Q 007695 300 HMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379 (592)
Q Consensus 300 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~ 379 (592)
.++...|++++|+..|....... +-+...+..+...|.+.|++++|++.|++.++... -+..+|..+..+|.+.|+++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE-RDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCchH
Confidence 34445566777777777665431 11233455667777777777777777777776542 25677777777777777777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 007695 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSN-FDYMIRLGHKPDDRCTASMIAAYGKKN 446 (592)
Q Consensus 380 ~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~l-f~~m~~~g~~pd~~t~~~li~a~~~~g 446 (592)
+|...|+...+.. +-+..+|..+...|.+.|++++|... +++..+..+. +...|......+...|
T Consensus 83 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 83 KAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhC
Confidence 7777777777664 44567777777777777776655443 4665553332 4455554444444444
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.49 E-value=7.7e-06 Score=81.58 Aligned_cols=199 Identities=10% Similarity=-0.041 Sum_probs=122.2
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHH
Q 007695 270 ENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSL 349 (592)
Q Consensus 270 ~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l 349 (592)
.|++++|.+++++..+.. +.. + +...++++.|...|.+. ...|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~------~---~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS------F---MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC------S---SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc------c---cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 567788888888776531 111 0 11146777777777665 4467778888888888
Q ss_pred HHHHHHCCC---CC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---CCC--HHHHHHHHHHHHHcCCHHHHHHH
Q 007695 350 VDMMITSGI---ER--SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF---QPT--LESCTLLVEAYGQAGDPDQARSN 419 (592)
Q Consensus 350 ~~~m~~~g~---~p--~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~---~~~--~~~~~~Li~~~~~~g~~~~A~~l 419 (592)
|.+..+... .+ -..+|+.+...|.+.|++++|...|++...... .+. ..+++.+...|.. |++++|+..
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 877755311 00 134677777778888888888887777654310 111 3456667777776 778887777
Q ss_pred HHHHHHcCCCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHH
Q 007695 420 FDYMIRLGHKP-D----DRCTASMIAAYGKKNLLDKALNLLLELEKD----GFEPG-PATYTVLVDWLGRLQLINEAEQL 489 (592)
Q Consensus 420 f~~m~~~g~~p-d----~~t~~~li~a~~~~g~~~~A~~l~~~m~~~----g~~p~-~~ty~~li~~~~~~g~~~~A~~l 489 (592)
|++........ + ..++..+...|.+.|++++|+..|++..+. +..+. ..++..+..++...|++++|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 77665521100 1 345666677777777777777777776542 11111 12455555566666777777777
Q ss_pred HHHHH
Q 007695 490 LGKIS 494 (592)
Q Consensus 490 ~~~m~ 494 (592)
|++..
T Consensus 218 ~~~al 222 (307)
T 2ifu_A 218 VRESY 222 (307)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 77766
No 116
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.48 E-value=2e-05 Score=77.80 Aligned_cols=163 Identities=8% Similarity=-0.068 Sum_probs=115.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHH
Q 007695 403 LVEAYGQAGDPDQARSNFDYMIRLGH-KPDDR----CTASMIAAYGKKNLLDKALNLLLELEKDGF-EPG----PATYTV 472 (592)
Q Consensus 403 Li~~~~~~g~~~~A~~lf~~m~~~g~-~pd~~----t~~~li~a~~~~g~~~~A~~l~~~m~~~g~-~p~----~~ty~~ 472 (592)
.+..+...|++++|..++++...... .|+.. .+..+...|...|++++|+..|.+...... .++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 46677888888888888888876422 22211 233456666777888999888888876321 122 336888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHh----c-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC-HHHHH
Q 007695 473 LVDWLGRLQLINEAEQLLGKISE----L-GEAP-PFKIQVSLCDMYARAGIEKKALQALGFLEAK----KEQMG-PDDFE 541 (592)
Q Consensus 473 li~~~~~~g~~~~A~~l~~~m~~----~-g~~p-~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~----~~~~~-~~~~~ 541 (592)
+..+|...|++++|...++++.+ . +..+ ...++..+...|.+.|++++|...+++..+. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 88888899999999988888763 1 1111 2347788889999999999999998876542 22222 56788
Q ss_pred HHHHHHHhCC-CHHHHHHHHHHHHH
Q 007695 542 RIINGLLAGG-FLQDAQRVHGLMEA 565 (592)
Q Consensus 542 ~li~a~~~~g-~~~~A~~l~~~m~~ 565 (592)
.+..+|...| .+++|.+.|++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 8899999999 46999998887753
No 117
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.48 E-value=7.1e-06 Score=76.38 Aligned_cols=126 Identities=10% Similarity=0.014 Sum_probs=75.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007695 295 STVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ 374 (592)
Q Consensus 295 ~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~ 374 (592)
+..+...+...|++++|...|++.. .|+..+|..+..+|...|++++|+..|++..... +.+...+..+..+|..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 3344455555666666666665543 4455566666666666666666666666655543 2245556666666666
Q ss_pred CCCHHHHHHHHHHHHHcCCCC----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 007695 375 CGDVRGAGQITNIMRIEEFQP----------------TLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426 (592)
Q Consensus 375 ~g~~~~A~~~~~~m~~~g~~~----------------~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~ 426 (592)
.|++++|...|+...... +. ....+..+..+|.+.|++++|...|+.....
T Consensus 84 ~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 666666666666655532 11 1256677777777777777777777777664
No 118
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.43 E-value=1.7e-05 Score=73.70 Aligned_cols=128 Identities=14% Similarity=-0.012 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007695 399 SCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLG 478 (592)
Q Consensus 399 ~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~ 478 (592)
.+..+...+...|++++|...|++.. .|+...|..+..+|...|++++|+..|++..+.. +.+...+..+..++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 34555666667777777777776652 3566666667777777777777777777665542 234556666666677
Q ss_pred HcCCHHHHHHHHHHHHhcCCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 007695 479 RLQLINEAEQLLGKISELGEAP---------------PFKIQVSLCDMYARAGIEKKALQALGFLEAK 531 (592)
Q Consensus 479 ~~g~~~~A~~l~~~m~~~g~~p---------------~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~ 531 (592)
..|++++|...+++..+..... ....+..+..+|...|++++|...|+.....
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 7777777777777666543221 1155666666666666666666666666554
No 119
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.43 E-value=8.6e-05 Score=74.79 Aligned_cols=263 Identities=10% Similarity=-0.022 Sum_probs=156.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 007695 261 SKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG-NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVN 339 (592)
Q Consensus 261 ~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g-~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~ 339 (592)
+.+-....+.+..++|+++++.+...+.. +..+|+.--..+...| .+++++.+++.+.... +-+..+|+.-...+.+
T Consensus 58 ~~~r~~~~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~ 135 (349)
T 3q7a_A 58 DYFRAIAAKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDR 135 (349)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 33333334445557899999998886443 6667887777777777 5899999999988765 5577888888777777
Q ss_pred c-C-CchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 007695 340 A-G-QPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR--------GAGQITNIMRIEEFQPTLESCTLLVEAYGQ 409 (592)
Q Consensus 340 ~-g-~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~--------~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~ 409 (592)
. + ++++++++++.+.+...+ |..+|+--.-.+.+.+.++ ++++.++.+.+.. +.|..+|+.....+.+
T Consensus 136 l~~~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~ 213 (349)
T 3q7a_A 136 ISPQDPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVS 213 (349)
T ss_dssp HCCSCCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTT
T ss_pred hcCCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 6 6 788888888888876533 6777766555555554444 6777777777665 5566777777666666
Q ss_pred cCC-------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH--HHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 007695 410 AGD-------PDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDK--ALNLLLELEKDGFEPGPATYTVLVDWLGRL 480 (592)
Q Consensus 410 ~g~-------~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~--A~~l~~~m~~~g~~p~~~ty~~li~~~~~~ 480 (592)
.+. ++++++.+++.....+. |...|+-+-..+.+.|.... -..+. ...+...+ ..
T Consensus 214 l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~---~~~~~~~~-~~----------- 277 (349)
T 3q7a_A 214 RPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAIL---PYTASKLN-PD----------- 277 (349)
T ss_dssp STTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHG---GGTC------------------
T ss_pred ccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCccccccccc---cccccccc-cc-----------
Confidence 664 56666666666654333 55555544444444333200 00000 00000000 00
Q ss_pred CCHHHHHHHHHHHHhcC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 007695 481 QLINEAEQLLGKISELG-----EAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIIN 545 (592)
Q Consensus 481 g~~~~A~~l~~~m~~~g-----~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 545 (592)
......+...+...+ ..++...+..|++.|...|+.++|.++++.+.++-.+....-|+..++
T Consensus 278 --~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~ 345 (349)
T 3q7a_A 278 --IETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRR 345 (349)
T ss_dssp ----------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred --chhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence 011111111111111 134677778888888888888888888888876544444555555443
No 120
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.39 E-value=1.5e-05 Score=70.53 Aligned_cols=125 Identities=11% Similarity=0.021 Sum_probs=54.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007695 295 STVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ 374 (592)
Q Consensus 295 ~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~ 374 (592)
+..+...+...|++++|...|++..+.. +.+..++..+..++...|++++|...+.+..... +.+..++..+..++..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 3444444444555555555555444332 2234444444444444555555555544444432 1234444444444445
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHH
Q 007695 375 CGDVRGAGQITNIMRIEEFQPTLESCTL--LVEAYGQAGDPDQARSNFDY 422 (592)
Q Consensus 375 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~--Li~~~~~~g~~~~A~~lf~~ 422 (592)
.|++++|...+++..... +.+...+.. ++..+.+.|++++|...+..
T Consensus 94 ~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 142 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEH 142 (166)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 555555555554444432 222333322 22224444445555444443
No 121
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.38 E-value=7.4e-05 Score=73.68 Aligned_cols=163 Identities=10% Similarity=-0.048 Sum_probs=110.4
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HHHHHH
Q 007695 368 LLRSFAQCGDVRGAGQITNIMRIEEF-QPT----LESCTLLVEAYGQAGDPDQARSNFDYMIRLGH-KPD----DRCTAS 437 (592)
Q Consensus 368 Ll~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~-~pd----~~t~~~ 437 (592)
.+..+...|++++|..+++....... .++ ...+..+...+...|++++|...|++...... .++ ..+|+.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35667777888888888777765421 112 11333466666677788888888888777322 122 235777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC-----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCCC-HHHHH
Q 007695 438 MIAAYGKKNLLDKALNLLLELEKD-----GFEPG-PATYTVLVDWLGRLQLINEAEQLLGKISEL----GEAPP-FKIQV 506 (592)
Q Consensus 438 li~a~~~~g~~~~A~~l~~~m~~~-----g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~~~~ 506 (592)
+..+|...|++++|+..|++..+. +..+. ..+|..+..+|.+.|++++|...+++..+. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 888888888888888888887631 11222 246778888888899999998888876642 22222 57888
Q ss_pred HHHHHHHHcC-CHHHHHHHHHHHHH
Q 007695 507 SLCDMYARAG-IEKKALQALGFLEA 530 (592)
Q Consensus 507 ~Li~~~~~~g-~~~~A~~~~~~m~~ 530 (592)
.+..+|.+.| .+++|...+++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 8899999999 46889888876643
No 122
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.38 E-value=1.7e-05 Score=66.02 Aligned_cols=21 Identities=24% Similarity=0.170 Sum_probs=7.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 007695 263 LIDAHAKENCLEDAERILKKM 283 (592)
Q Consensus 263 Li~~~~~~g~~~~A~~l~~~m 283 (592)
+...+...|++++|.+.|+++
T Consensus 15 ~~~~~~~~~~~~~A~~~~~~~ 35 (125)
T 1na0_A 15 LGNAYYKQGDYDEAIEYYQKA 35 (125)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 333333333333333333333
No 123
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.36 E-value=7.3e-05 Score=73.73 Aligned_cols=167 Identities=7% Similarity=-0.091 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCC--H
Q 007695 398 ESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD-----RCTASMIAAYGKKNLLDKALNLLLELEKDG---FEPG--P 467 (592)
Q Consensus 398 ~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~-----~t~~~li~a~~~~g~~~~A~~l~~~m~~~g---~~p~--~ 467 (592)
..+...+..+...|++++|...+.+........+. ..+..+...+...|++++|+..+.+..+.. ..+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 44555667777888888888888777664322111 123345556677788888888888776531 1122 4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCC-C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCC-C
Q 007695 468 ATYTVLVDWLGRLQLINEAEQLLGKISE---LGEA-P--PFKIQVSLCDMYARAGIEKKALQALGFLEAKK----EQM-G 536 (592)
Q Consensus 468 ~ty~~li~~~~~~g~~~~A~~l~~~m~~---~g~~-p--~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~----~~~-~ 536 (592)
.+|+.+...|...|++++|...+++..+ .... + ...++..+...|...|++++|...+++..... ... -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 5777888888888888888888888762 2111 1 12577888888889999999998888765421 111 1
Q ss_pred HHHHHHHHHHHHhCCCHHHH-HHHHHHHH
Q 007695 537 PDDFERIINGLLAGGFLQDA-QRVHGLME 564 (592)
Q Consensus 537 ~~~~~~li~a~~~~g~~~~A-~~l~~~m~ 564 (592)
..+|..+...|...|++++| ...+++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 45678888888899999888 66676654
No 124
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.35 E-value=0.00071 Score=72.10 Aligned_cols=334 Identities=9% Similarity=-0.085 Sum_probs=202.6
Q ss_pred ccC-CchhHHHHHHhhcCCCHhhHHHHHHHHHhhCHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHH
Q 007695 203 KEE-DPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENC-LEDAERIL 280 (592)
Q Consensus 203 ~~g-~~~~A~~~~~~~~~p~~~t~~~lL~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~-~~~A~~l~ 280 (592)
+.| +++.|+.+|++++ .-+-.++.+.+..+++..+.. .|++..|...+....+.+. .+....+|
T Consensus 6 ~~~~~i~~aR~vyer~l-----------~~~P~~~~e~~~~iferal~~---~ps~~LW~~Y~~f~~~~~~~~~~i~~~f 71 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHAR-----------RLYMSKDYRSLESLFGRCLKK---SYNLDLWMLYIEYVRKVSQKKFKLYEVY 71 (493)
T ss_dssp ------CCHHHHHHHHH-----------HHHHTTCHHHHHHHHHHHSTT---CCCHHHHHHHHHHHHHHC----CTHHHH
T ss_pred HcCcchHHHHHHHHHHH-----------HHCCCCCHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 456 4888888888762 112125677778888887753 5799999998888877764 45677888
Q ss_pred HHHHHC-CCCC-CHHHHHHHHHHHH----HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-------------cC
Q 007695 281 KKMNEN-GIVP-DIVTSTVLVHMYS----KAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVN-------------AG 341 (592)
Q Consensus 281 ~~m~~~-g~~p-d~~~~~~Li~~~~----~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~-------------~g 341 (592)
+..... |..| +...|...+..+. ..++++.+..+|++........-...|......-.. .+
T Consensus 72 e~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~ 151 (493)
T 2uy1_A 72 EFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLP 151 (493)
T ss_dssp HHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhH
Confidence 887654 5333 6677877776654 356788999999999874211112233322221111 11
Q ss_pred CchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC--C-----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 007695 342 QPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG--D-----VRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPD 414 (592)
Q Consensus 342 ~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g--~-----~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~ 414 (592)
.+..|..+++.+...--..+...|...+..-...+ - .+.+..+|+++.... +.+...|...+..+.+.|+.+
T Consensus 152 ~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~ 230 (493)
T 2uy1_A 152 IFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKE 230 (493)
T ss_dssp HHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHH
Confidence 22334444444432100013345555555433221 1 345677888888754 667888999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---------CCCC---CHHHHHHHHHHHHHcCC
Q 007695 415 QARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKD---------GFEP---GPATYTVLVDWLGRLQL 482 (592)
Q Consensus 415 ~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~---------g~~p---~~~ty~~li~~~~~~g~ 482 (592)
.|..+|++.... |+...+.. .|+.....++. +..+.+. +..+ ....|...+..+.+.+.
T Consensus 231 ~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~ 301 (493)
T 2uy1_A 231 KAKKVVERGIEM---SDGMFLSL---YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRG 301 (493)
T ss_dssp HHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC---CCcHHHHH---HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCC
Confidence 999999999987 44332221 23222111111 2222211 0011 12456666777777888
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 007695 483 INEAEQLLGKISELGEAPPFKIQVSLCDMYARAG-IEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHG 561 (592)
Q Consensus 483 ~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~ 561 (592)
++.|..+|.+. ... ..+..+|...+..-...+ +.+.|..+|+...+. .+-++..|...+....+.|+.+.|..+|+
T Consensus 302 ~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~-~~~~~~~~~~yid~e~~~~~~~~aR~l~e 378 (493)
T 2uy1_A 302 LELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK-HPDSTLLKEEFFLFLLRIGDEENARALFK 378 (493)
T ss_dssp HHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999 322 235566654443333334 699999999998876 33356677778888888999999998888
Q ss_pred HH
Q 007695 562 LM 563 (592)
Q Consensus 562 ~m 563 (592)
..
T Consensus 379 r~ 380 (493)
T 2uy1_A 379 RL 380 (493)
T ss_dssp HS
T ss_pred HH
Confidence 75
No 125
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.35 E-value=0.00023 Score=71.69 Aligned_cols=172 Identities=6% Similarity=-0.015 Sum_probs=138.8
Q ss_pred CHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-C-CHHHHH
Q 007695 236 NTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKEN-CLEDAERILKKMNENGIVPDIVTSTVLVHMYSKA-G-NLDRAK 312 (592)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g-~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~-g-~~~~A~ 312 (592)
..+.++.....++... +.+..+|+.--.++...| .+++++.+++.+.....+ +..+|+.-..++.+. + ++++++
T Consensus 69 ~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 69 KSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp CSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHHH
Confidence 3567888888887643 345556888777777888 599999999999988655 788888877777776 7 899999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCch--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC-------
Q 007695 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPK--------LGMSLVDMMITSGIERSEEIYLALLRSFAQCGD------- 377 (592)
Q Consensus 313 ~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~--------~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~------- 377 (592)
++++.+.+.. +.|-.+|+.-...+.+.+.++ ++++.++++++..+. |...|+.....+.+.+.
T Consensus 146 ~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~ 223 (349)
T 3q7a_A 146 EYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRS 223 (349)
T ss_dssp HHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHH
Confidence 9999999775 568889998877777777777 999999999997654 88999998888888876
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 007695 378 VRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDP 413 (592)
Q Consensus 378 ~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~ 413 (592)
++++++.+++..... +-|...|+-+-..+.+.|..
T Consensus 224 ~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 224 LQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCC
Confidence 688999998888876 66888898887777776654
No 126
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.35 E-value=2.4e-05 Score=69.24 Aligned_cols=128 Identities=8% Similarity=-0.012 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007695 328 KVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAY 407 (592)
Q Consensus 328 ~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~ 407 (592)
..+..+...+...|++++|...|.+..... +.+..++..+..++...|++++|...+....... +.+..++..+..+|
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 355666666777777777777777776643 2256667777777777777777777777766654 44566677777777
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHH
Q 007695 408 GQAGDPDQARSNFDYMIRLGHKPDDRCTA--SMIAAYGKKNLLDKALNLLLEL 458 (592)
Q Consensus 408 ~~~g~~~~A~~lf~~m~~~g~~pd~~t~~--~li~a~~~~g~~~~A~~l~~~m 458 (592)
...|++++|...|++.....+. +...+. .....+...|++++|+..+...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 7777777777777776664332 333332 2233355566666666666554
No 127
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.32 E-value=3.2e-05 Score=64.35 Aligned_cols=60 Identities=17% Similarity=0.213 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHH
Q 007695 294 TSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMI 354 (592)
Q Consensus 294 ~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~ 354 (592)
.|..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|..+++++.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 70 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 33344444444444444444444443321 2233333344444444444444444444433
No 128
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.29 E-value=2.3e-05 Score=66.86 Aligned_cols=94 Identities=10% Similarity=-0.045 Sum_probs=38.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 007695 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVN 339 (592)
Q Consensus 260 y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~ 339 (592)
|......|.+.|++++|++.|++..+... .+...|..+..+|.+.|++++|...|++..+.. +.+..+|..+..+|..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRDP-ENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHH
Confidence 33344444444444444444444433311 133344444444444444444444444443322 2233344444444444
Q ss_pred cCCchHHHHHHHHHHH
Q 007695 340 AGQPKLGMSLVDMMIT 355 (592)
Q Consensus 340 ~g~~~~A~~l~~~m~~ 355 (592)
.|++++|+..|++.++
T Consensus 94 ~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 94 MREWSKAQRAYEDALQ 109 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 4444444444444433
No 129
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.29 E-value=2.1e-05 Score=66.13 Aligned_cols=26 Identities=8% Similarity=-0.134 Sum_probs=10.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHH
Q 007695 364 IYLALLRSFAQCGDVRGAGQITNIMR 389 (592)
Q Consensus 364 t~~~Ll~~~~~~g~~~~A~~~~~~m~ 389 (592)
.+..+...|...|++++|...++...
T Consensus 82 ~~~~~~~~~~~~~~~~~A~~~~~~~~ 107 (131)
T 2vyi_A 82 AYGRMGLALSSLNKHVEAVAYYKKAL 107 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 130
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.27 E-value=1.8e-05 Score=66.93 Aligned_cols=59 Identities=10% Similarity=-0.034 Sum_probs=22.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007695 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319 (592)
Q Consensus 260 y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~ 319 (592)
|..+...+.+.|++++|...|++..+.. +.+...+..+..+|...|++++|...|++..
T Consensus 19 ~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 77 (133)
T 2lni_A 19 VKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECI 77 (133)
T ss_dssp HHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3334444444444444444444433321 1133333333334444444444444444333
No 131
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.27 E-value=8.2e-06 Score=75.07 Aligned_cols=155 Identities=14% Similarity=0.040 Sum_probs=72.1
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----CCCC-CCHHHHHHHHHHHHHcCC
Q 007695 268 AKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRS----HGFQ-PDKKVYNSMIMAYVNAGQ 342 (592)
Q Consensus 268 ~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~----~g~~-pd~~t~~~li~a~~~~g~ 342 (592)
...|++++|.++++.+... ......++..+...|...|++++|...|++... .+.. ....+++.+...|...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 3456666666644444331 122455566666666666777776666666553 1111 123345555555666666
Q ss_pred chHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---CCC--HHHHHHHHHHHHHcC
Q 007695 343 PKLGMSLVDMMITS----GIER--SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF---QPT--LESCTLLVEAYGQAG 411 (592)
Q Consensus 343 ~~~A~~l~~~m~~~----g~~p--~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~---~~~--~~~~~~Li~~~~~~g 411 (592)
+++|...+.+.... +-.+ ...++..+...+...|++++|...+++.....- .+. ..++..+...|...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 66666655554432 1011 122344444555555555555555554432100 000 122344444455555
Q ss_pred CHHHHHHHHHHH
Q 007695 412 DPDQARSNFDYM 423 (592)
Q Consensus 412 ~~~~A~~lf~~m 423 (592)
++++|...|++.
T Consensus 162 ~~~~A~~~~~~a 173 (203)
T 3gw4_A 162 NLLEAQQHWLRA 173 (203)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 555555444443
No 132
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.26 E-value=8e-05 Score=73.43 Aligned_cols=166 Identities=7% Similarity=-0.025 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC---CCC--HH
Q 007695 259 DYSKLIDAHAKENCLEDAERILKKMNENGIVPD-----IVTSTVLVHMYSKAGNLDRAKEAFESLRSHGF---QPD--KK 328 (592)
Q Consensus 259 ~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd-----~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~---~pd--~~ 328 (592)
.+...+..+...|++++|.+.+....+.....+ ...+..+...+...|++++|...|++...... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 445566777788888888888887766532211 12233455556667788888888877764321 111 34
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHH---C-CCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC----CCC-CH
Q 007695 329 VYNSMIMAYVNAGQPKLGMSLVDMMIT---S-GIER--SEEIYLALLRSFAQCGDVRGAGQITNIMRIEE----FQP-TL 397 (592)
Q Consensus 329 t~~~li~a~~~~g~~~~A~~l~~~m~~---~-g~~p--~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g----~~~-~~ 397 (592)
+|+.+...|...|++++|...|++..+ . +..+ ...++..+...|.+.|++++|...+++..... ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 677777777777777777777777652 1 1111 11466666777777777777777776655321 111 14
Q ss_pred HHHHHHHHHHHHcCCHHHH-HHHHHHHH
Q 007695 398 ESCTLLVEAYGQAGDPDQA-RSNFDYMI 424 (592)
Q Consensus 398 ~~~~~Li~~~~~~g~~~~A-~~lf~~m~ 424 (592)
.+|..+...|.+.|++++| ...|++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 5566666667777777666 55555543
No 133
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.25 E-value=2.9e-05 Score=66.27 Aligned_cols=101 Identities=10% Similarity=-0.147 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007695 468 ATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547 (592)
Q Consensus 468 ~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~ 547 (592)
..+......|.+.|++++|...|++..+.... +..+|..+..+|.+.|++++|...|++..+.+ +.++..|..+..+|
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 34455556666666666666666666655433 56666666666667777777777766666552 33455666666667
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCCH
Q 007695 548 LAGGFLQDAQRVHGLMEAQGFAASE 572 (592)
Q Consensus 548 ~~~g~~~~A~~l~~~m~~~g~~pd~ 572 (592)
...|++++|++.|++..+. .|+.
T Consensus 92 ~~~~~~~~A~~~~~~al~l--~P~~ 114 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQV--DPSN 114 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred HHCCCHHHHHHHHHHHHHH--CcCC
Confidence 7777777777777666653 4554
No 134
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.24 E-value=4.9e-06 Score=81.96 Aligned_cols=191 Identities=10% Similarity=-0.030 Sum_probs=96.3
Q ss_pred CHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 007695 326 DKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVE 405 (592)
Q Consensus 326 d~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~ 405 (592)
+...+..+...+.+.|++++|...|++.+... +-+...|..+..+|.+.|++++|...++...+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34455555566666666666666666665542 1255566666666666666666666666665543 345566666666
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 007695 406 AYGQAGDPDQARSNFDYMIRLGH----KPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQ 481 (592)
Q Consensus 406 ~~~~~g~~~~A~~lf~~m~~~g~----~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g 481 (592)
+|...|++++|...|.+.....+ ..+...+..+ ...+. . -+..........+......+.. + ..|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~--~~~~~------~-~~~~~~~~~~~~~~~i~~~l~~-l-~~~ 149 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL--RIAKK------K-RWNSIEERRIHQESELHSYLTR-L-IAA 149 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH--HHHHH------H-HHHHHHHTCCCCCCHHHHHHHH-H-HHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH--HHHHH------H-HHHHHHHHHHhhhHHHHHHHHH-H-HHH
Confidence 66677777777666666554211 0011111111 11111 1 1111222223333333332222 1 246
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Q 007695 482 LINEAEQLLGKISELGEAPPFKIQVSLCDMYARA-GIEKKALQALGFLEA 530 (592)
Q Consensus 482 ~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~-g~~~~A~~~~~~m~~ 530 (592)
+.++|.+.++...+.... +......+...+.+. +.+++|.++|..+.+
T Consensus 150 ~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 150 ERERELEECQRNHEGHED-DGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHHHTTTSGGGTTTSC-HHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHhhhccccc-hhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 667777766666554221 333333444444444 556777777776654
No 135
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.23 E-value=3.5e-05 Score=65.17 Aligned_cols=97 Identities=10% Similarity=0.012 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007695 327 KKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEA 406 (592)
Q Consensus 327 ~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~ 406 (592)
...|..+...+...|++++|...|++..... +.+..++..+..+|...|++++|...++...... +.+...+..+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 3344444444445555555555554444432 1134444444445555555555555555444433 2334445555555
Q ss_pred HHHcCCHHHHHHHHHHHHH
Q 007695 407 YGQAGDPDQARSNFDYMIR 425 (592)
Q Consensus 407 ~~~~g~~~~A~~lf~~m~~ 425 (592)
|.+.|++++|...|++...
T Consensus 94 ~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 5555555555555555444
No 136
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.22 E-value=1.6e-05 Score=73.12 Aligned_cols=96 Identities=13% Similarity=-0.098 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----H
Q 007695 469 TYTVLVDWLGRLQLINEAEQLLGKISEL----GEAP--PFKIQVSLCDMYARAGIEKKALQALGFLEAKKE-QMG----P 537 (592)
Q Consensus 469 ty~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p--~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~-~~~----~ 537 (592)
.+..+...+...|++++|...+++.... +..+ ....+..+...+...|++++|...+++...... ..+ .
T Consensus 68 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 147 (203)
T 3gw4_A 68 ALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIA 147 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHH
Confidence 3444444555555555555555544322 1011 123455555566666666666666655442100 011 1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 007695 538 DDFERIINGLLAGGFLQDAQRVHGLME 564 (592)
Q Consensus 538 ~~~~~li~a~~~~g~~~~A~~l~~~m~ 564 (592)
.++..+...+...|++++|.+.+++..
T Consensus 148 ~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 148 CAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 124555666666677777666666554
No 137
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.22 E-value=3.7e-05 Score=64.50 Aligned_cols=117 Identities=9% Similarity=0.012 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007695 328 KVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAY 407 (592)
Q Consensus 328 ~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~ 407 (592)
..+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...+....... +.+...+..+...|
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHH
Confidence 445555555555566666666665555432 2245555555666666666666666666655543 33455566666666
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 007695 408 GQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNL 447 (592)
Q Consensus 408 ~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~ 447 (592)
...|++++|...|++.....+. +...+..+..++...|+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhc
Confidence 6666666666666665554321 34444444444444443
No 138
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.18 E-value=1.5e-05 Score=71.95 Aligned_cols=117 Identities=10% Similarity=0.072 Sum_probs=46.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHHcCCc--hHH
Q 007695 270 ENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA-YVNAGQP--KLG 346 (592)
Q Consensus 270 ~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a-~~~~g~~--~~A 346 (592)
.|++++|...|+...+.. +.+...|..+...|...|++++|...|++..+.. +.+...+..+..+ |...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 344444444444444332 1234444444444444444444444444444322 2233344444444 3344444 444
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 007695 347 MSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMR 389 (592)
Q Consensus 347 ~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~ 389 (592)
...+++..... +-+...+..+...|...|++++|...++...
T Consensus 101 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 142 (177)
T 2e2e_A 101 RAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVM 142 (177)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 44444444332 1123333334444444444444444444433
No 139
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.16 E-value=4.8e-05 Score=76.96 Aligned_cols=122 Identities=9% Similarity=-0.075 Sum_probs=59.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC----------------HHHHHHHHHHHHHcCCchHHHHHHHHHH
Q 007695 291 DIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPD----------------KKVYNSMIMAYVNAGQPKLGMSLVDMMI 354 (592)
Q Consensus 291 d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd----------------~~t~~~li~a~~~~g~~~~A~~l~~~m~ 354 (592)
+...|..+...|.+.|++++|...|++..+.. |+ ..+|..+..+|.+.|++++|+..+++.+
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45667777777888888888888887777542 22 2344444444444444444444444444
Q ss_pred HCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 007695 355 TSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA 416 (592)
Q Consensus 355 ~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A 416 (592)
+.. +.+...|..+..+|...|++++|...|+...+.. +.+..++..+..++.+.|+.++|
T Consensus 224 ~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 224 ELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 332 1133344444444444444444444444443332 22333333444444444443333
No 140
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.16 E-value=2.3e-05 Score=70.76 Aligned_cols=117 Identities=14% Similarity=0.081 Sum_probs=49.0
Q ss_pred CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHHcCCH--HHHH
Q 007695 341 GQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEA-YGQAGDP--DQAR 417 (592)
Q Consensus 341 g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~-~~~~g~~--~~A~ 417 (592)
|++++|...+++..... +.+...+..+...|...|++++|...|+...... +.+...+..+..+ |...|++ ++|.
T Consensus 24 ~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A~ 101 (177)
T 2e2e_A 24 QNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQTR 101 (177)
T ss_dssp ---CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred cCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHHH
Confidence 34444444444443322 1233444444444444444444444444444332 2234444444444 4444444 4444
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007695 418 SNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEK 460 (592)
Q Consensus 418 ~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~ 460 (592)
..|++.....+. +...+..+..+|...|++++|...|....+
T Consensus 102 ~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 102 AMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 444444443221 233344444444444455555444444443
No 141
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.15 E-value=9.7e-06 Score=79.82 Aligned_cols=194 Identities=10% Similarity=-0.027 Sum_probs=133.0
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 007695 361 SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIA 440 (592)
Q Consensus 361 ~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~ 440 (592)
+...+..+...+.+.|++++|...|+...... +.+...|..+..+|.+.|++++|...+++.....+. +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 56778888999999999999999999999875 557899999999999999999999999999885442 6778888999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHH
Q 007695 441 AYGKKNLLDKALNLLLELEKDGFEPGP-ATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEK 519 (592)
Q Consensus 441 a~~~~g~~~~A~~l~~~m~~~g~~p~~-~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~ 519 (592)
+|...|++++|...|....+.. |+. ..+...+....+ ...+.. +..........+......+... ..|+.+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~i~~~l~~l--~~~~~~ 152 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALR---IAKKKR-WNSIEERRIHQESELHSYLTRL--IAAERE 152 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHH---HHHHHH-HHHHHHTCCCCCCHHHHHHHHH--HHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHH---HHHHHH-HHHHHHHHHhhhHHHHHHHHHH--HHHHHH
Confidence 9999999999999999876531 210 011111111111 111111 1222233344455555554333 368899
Q ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhC-CCHHHHHHHHHHHHHC
Q 007695 520 KALQALGFLEAKKEQMG-PDDFERIINGLLAG-GFLQDAQRVHGLMEAQ 566 (592)
Q Consensus 520 ~A~~~~~~m~~~~~~~~-~~~~~~li~a~~~~-g~~~~A~~l~~~m~~~ 566 (592)
+|.+.++...+. .|+ ......+...+.+. +.+++|.++|.+..+.
T Consensus 153 ~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 153 RELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999988877664 333 33334444444444 6788899999887653
No 142
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.15 E-value=4.4e-05 Score=77.18 Aligned_cols=132 Identities=11% Similarity=-0.082 Sum_probs=93.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 007695 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPD--------------IVTSTVLVHMYSKAGNLDRAKEAFESLRSH 321 (592)
Q Consensus 256 ~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd--------------~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~ 321 (592)
+...|..+...|.+.|++++|...|++......... ...|..+..+|.+.|++++|...|++..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345677777778888888888888887776532211 467777888888888888888888887765
Q ss_pred CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHH-HHHHHHHH
Q 007695 322 GFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGA-GQITNIMR 389 (592)
Q Consensus 322 g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A-~~~~~~m~ 389 (592)
. +.+..+|..+..+|...|++++|+..|++.++.. +-+...+..+..++.+.|+.+++ ..++..|.
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 4467777788888888888888888888877753 23566777777777777777766 33455444
No 143
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.15 E-value=3.1e-05 Score=68.51 Aligned_cols=101 Identities=12% Similarity=-0.065 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007695 468 ATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547 (592)
Q Consensus 468 ~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~ 547 (592)
..+..+...+.+.|++++|...|++....... +...|..+..+|...|++++|...|++....+ +-++..|..+..+|
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHH
Confidence 44555666677777777777777777766544 66777777777777777777777777776653 33566677777777
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCCH
Q 007695 548 LAGGFLQDAQRVHGLMEAQGFAASE 572 (592)
Q Consensus 548 ~~~g~~~~A~~l~~~m~~~g~~pd~ 572 (592)
...|++++|++.|++..+. .|+.
T Consensus 115 ~~lg~~~eA~~~~~~al~l--~~~~ 137 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQH--SNDE 137 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CCCH
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCH
Confidence 7777777777777777664 3444
No 144
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.14 E-value=8.5e-05 Score=65.64 Aligned_cols=97 Identities=13% Similarity=0.016 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007695 362 EEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAA 441 (592)
Q Consensus 362 ~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a 441 (592)
...+..+...+.+.|++++|...|+...... +.+...|..+..+|...|++++|...|++.....+. +...|..+..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHH
Confidence 3445556666666677777777776666654 445666666666666777777777777666664432 44555566666
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 007695 442 YGKKNLLDKALNLLLELEK 460 (592)
Q Consensus 442 ~~~~g~~~~A~~l~~~m~~ 460 (592)
|...|++++|...|++..+
T Consensus 114 ~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 6666777777666666655
No 145
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.13 E-value=0.0017 Score=64.87 Aligned_cols=171 Identities=6% Similarity=-0.123 Sum_probs=109.1
Q ss_pred HHcCCHH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007695 268 AKENCLE-DAERILKKMNENGIVPDIVTSTVLVHMYSKAGN----------LDRAKEAFESLRSHGFQPDKKVYNSMIMA 336 (592)
Q Consensus 268 ~~~g~~~-~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~----------~~~A~~~~~~m~~~g~~pd~~t~~~li~a 336 (592)
.+.|.++ +|+.+++.+...+.. +...|+.=-..+...+. +++++.+++.+.... +-+..+|+.-...
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wl 117 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 117 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3456554 788888888876433 44555543333322222 567777787777653 4577778777777
Q ss_pred HHHcCC--chHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc---
Q 007695 337 YVNAGQ--PKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGD-VRGAGQITNIMRIEEFQPTLESCTLLVEAYGQA--- 410 (592)
Q Consensus 337 ~~~~g~--~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~--- 410 (592)
+.+.++ +++++.++..+.+.... |..+|+.-.-.+...|. ++++++.+..+.... +.|..+|+.....+.+.
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCC
T ss_pred HhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhc
Confidence 777774 67888888888776543 77777777666777777 577888888777766 56777777666665554
Q ss_pred -----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 007695 411 -----------GDPDQARSNFDYMIRLGHKPDDRCTASMIAAYG 443 (592)
Q Consensus 411 -----------g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~ 443 (592)
+.++++++.+.......+. |...|+-+-..+.
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~ 238 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLG 238 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHH
T ss_pred cccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 3466777777776665443 5555654433333
No 146
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.10 E-value=3e-05 Score=68.21 Aligned_cols=96 Identities=11% Similarity=0.016 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007695 328 KVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAY 407 (592)
Q Consensus 328 ~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~ 407 (592)
..+..+...+.+.|++++|...|++..... +.+...|..+..+|...|++++|...|+...... +.+...+..+..+|
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHH
Confidence 344444555555555555555555555432 2244555555555555555555555555555443 33445555555555
Q ss_pred HHcCCHHHHHHHHHHHHH
Q 007695 408 GQAGDPDQARSNFDYMIR 425 (592)
Q Consensus 408 ~~~g~~~~A~~lf~~m~~ 425 (592)
...|++++|...|+....
T Consensus 100 ~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 555555555555555544
No 147
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.09 E-value=9.2e-05 Score=72.17 Aligned_cols=185 Identities=13% Similarity=0.022 Sum_probs=84.1
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-------HHHHHHcCCchHHHHHHHHHHHCCCCCC---------------
Q 007695 304 KAGNLDRAKEAFESLRSHGFQPDKKVYNSM-------IMAYVNAGQPKLGMSLVDMMITSGIERS--------------- 361 (592)
Q Consensus 304 ~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l-------i~a~~~~g~~~~A~~l~~~m~~~g~~p~--------------- 361 (592)
..++...|.+.|.+..... +-....|+.+ ...+.+.++..+++..+..-.+ +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 4566666666666666543 3344556555 3344444444444433333322 1111
Q ss_pred -------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---
Q 007695 362 -------EEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD--- 431 (592)
Q Consensus 362 -------~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd--- 431 (592)
......+...+...|++++|.++|..+...+ |+......+...+.+.+++++|+..|+..... |+
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~---~d~~~ 169 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW---PDKFL 169 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC---SCHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc---CCccc
Confidence 1223334444555555555555555554332 22224444444555555555555555433221 11
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007695 432 -DRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPG--PATYTVLVDWLGRLQLINEAEQLLGKISEL 496 (592)
Q Consensus 432 -~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~--~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 496 (592)
...+..+-.++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 170 AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 11333344455555555555555555443221132 123333444455555555555555555543
No 148
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.08 E-value=8.8e-06 Score=75.21 Aligned_cols=122 Identities=11% Similarity=-0.043 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHCCCC-C--------------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 007695 329 VYNSMIMAYVNAGQPKLGMSLVDMMITSGIE-R--------------SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF 393 (592)
Q Consensus 329 t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~-p--------------~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~ 393 (592)
.+..+...+...|++++|...|.+....... | ...++..+..+|.+.|++++|...++......
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~- 118 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID- 118 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-
Confidence 3444444555555555555555555442111 0 02455556666666666666666666665553
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007695 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452 (592)
Q Consensus 394 ~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~ 452 (592)
+.+..++..+..+|...|++++|...|++.....+. +...+..+..++...++..++.
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHC--
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666666666666553221 3444444444444444444443
No 149
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.08 E-value=0.00013 Score=59.87 Aligned_cols=57 Identities=14% Similarity=0.048 Sum_probs=21.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007695 261 SKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESL 318 (592)
Q Consensus 261 ~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m 318 (592)
..+...+...|++++|...|+...... +.+...+..+..++...|++++|...+++.
T Consensus 8 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 64 (118)
T 1elw_A 8 KEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKT 64 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 333333344444444444444433321 113333333333333344444444444333
No 150
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.07 E-value=6.2e-06 Score=76.24 Aligned_cols=156 Identities=8% Similarity=-0.016 Sum_probs=94.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC----------------HHH
Q 007695 266 AHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPD----------------KKV 329 (592)
Q Consensus 266 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd----------------~~t 329 (592)
.....|+++.+.+.++.-.... ......+..+...+...|++++|...|++..... +.+ ..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~ 90 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISC 90 (198)
T ss_dssp ---------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHH
T ss_pred hhhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHH
Confidence 3344455555555444221110 0134456666777777788888888887777542 112 267
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 007695 330 YNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQ 409 (592)
Q Consensus 330 ~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~ 409 (592)
|..+..+|...|++++|+..+++.+... +.+...+..+..+|...|++++|...|+...... +.+...+..+..++..
T Consensus 91 ~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 91 NLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHH
Confidence 7788888888888888888888887753 3367788888888888888888888888887765 4567777777777777
Q ss_pred cCCHHHHH-HHHHHHHH
Q 007695 410 AGDPDQAR-SNFDYMIR 425 (592)
Q Consensus 410 ~g~~~~A~-~lf~~m~~ 425 (592)
.++.+++. ..|..|..
T Consensus 169 ~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 169 LKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHHC-----------
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 77666665 44555443
No 151
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.07 E-value=2.5e-05 Score=68.70 Aligned_cols=95 Identities=14% Similarity=0.020 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 007695 469 TYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLL 548 (592)
Q Consensus 469 ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~ 548 (592)
.+..+...+...|++++|...|+........ +...|..+..+|...|++++|...|++....+ +.++..|..+..+|.
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 3334444455555555555555555444332 44455555555555555555555555554432 223444455555555
Q ss_pred hCCCHHHHHHHHHHHHH
Q 007695 549 AGGFLQDAQRVHGLMEA 565 (592)
Q Consensus 549 ~~g~~~~A~~l~~~m~~ 565 (592)
..|++++|++.|++..+
T Consensus 101 ~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQE 117 (148)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555555443
No 152
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.06 E-value=0.0001 Score=71.85 Aligned_cols=190 Identities=12% Similarity=0.016 Sum_probs=114.0
Q ss_pred HcCCchHHHHHHHHHHHCCCCCCHHHHHHH-------HHHHHhCCCHHHHHHHHHHHHH------------cCCC-----
Q 007695 339 NAGQPKLGMSLVDMMITSGIERSEEIYLAL-------LRSFAQCGDVRGAGQITNIMRI------------EEFQ----- 394 (592)
Q Consensus 339 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~L-------l~~~~~~g~~~~A~~~~~~m~~------------~g~~----- 394 (592)
..++...|.+.|.+....... ....|+.+ ...+.+.++..+++..+..-.. .|+-
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 567888888888888876432 56666655 3444444444444443333332 1100
Q ss_pred ---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHH
Q 007695 395 ---PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPG--PAT 469 (592)
Q Consensus 395 ---~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~--~~t 469 (592)
.-...+..+...+...|++++|.++|+.+...+ |+......+...|.+.+++++|+..|....... .|. ...
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a 173 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA 173 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence 002344556677777888888888887776543 333344445556777788888888876443311 111 235
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 007695 470 YTVLVDWLGRLQLINEAEQLLGKISELGEAPP--FKIQVSLCDMYARAGIEKKALQALGFLEAKK 532 (592)
Q Consensus 470 y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~ 532 (592)
+..+-.++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...+
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 56667777777788888777777764332243 2355566667777777777777777777653
No 153
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.05 E-value=0.00015 Score=59.46 Aligned_cols=113 Identities=11% Similarity=-0.008 Sum_probs=93.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007695 291 DIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370 (592)
Q Consensus 291 d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~ 370 (592)
+...+..+...+...|++++|...|+...... +.+...+..+...+...|++++|...+++..... +.+...+..+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 45677888899999999999999999988753 4578889999999999999999999999998864 336888999999
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007695 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEA 406 (592)
Q Consensus 371 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~ 406 (592)
++...|++++|...+....... +.+...+..+...
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 115 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHE-ANNPQLKEGLQNM 115 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHh
Confidence 9999999999999999988765 4455665555443
No 154
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.02 E-value=0.006 Score=60.93 Aligned_cols=154 Identities=12% Similarity=0.031 Sum_probs=101.1
Q ss_pred HHcCCHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC----------chHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007695 303 SKAGNLD-RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQ----------PKLGMSLVDMMITSGIERSEEIYLALLRS 371 (592)
Q Consensus 303 ~~~g~~~-~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~----------~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~ 371 (592)
.+.|.+. +|+.+++.+.... +-+..+|+.--..+...+. +++++.+++.+.....+ +..+|+.-...
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~wl 117 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWL 117 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 3556655 7899999888764 3455567654444433332 56777777777775433 67777776666
Q ss_pred HHhCC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---
Q 007695 372 FAQCG--DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGD-PDQARSNFDYMIRLGHKPDDRCTASMIAAYGKK--- 445 (592)
Q Consensus 372 ~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~-~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~--- 445 (592)
+.+.+ .+++++.+++.+.+.. +.|..+|+.-...+...|. ++++++.++.+....+. |...|+.....+.+.
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCC
T ss_pred HhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhc
Confidence 76766 3778888888888776 6677777777777777777 57888888888776553 666666555444443
Q ss_pred -----------CCHHHHHHHHHHHHH
Q 007695 446 -----------NLLDKALNLLLELEK 460 (592)
Q Consensus 446 -----------g~~~~A~~l~~~m~~ 460 (592)
+.+++++..+.....
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~ 221 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFF 221 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHH
T ss_pred cccccccccchHHHHHHHHHHHHHHH
Confidence 235555666655554
No 155
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.01 E-value=0.00016 Score=61.00 Aligned_cols=96 Identities=7% Similarity=-0.157 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 007695 469 TYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLL 548 (592)
Q Consensus 469 ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~ 548 (592)
.+..+...+.+.|++++|...|++..+.... +...|..+..+|.+.|++++|...+++....+ +.++..|..+..+|.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 4444555556666666666666666554433 55666666666666666666666666665542 234555666666666
Q ss_pred hCCCHHHHHHHHHHHHHC
Q 007695 549 AGGFLQDAQRVHGLMEAQ 566 (592)
Q Consensus 549 ~~g~~~~A~~l~~~m~~~ 566 (592)
..|++++|+..|++..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 666666666666666543
No 156
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.00 E-value=0.00021 Score=60.17 Aligned_cols=89 Identities=12% Similarity=-0.073 Sum_probs=34.8
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 007695 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNL 447 (592)
Q Consensus 368 Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~ 447 (592)
+...+.+.|++++|...|++..... +.+...|..+..+|.+.|++++|...|++.....+. +...|..+..+|...|+
T Consensus 10 ~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~ 87 (126)
T 3upv_A 10 EGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKE 87 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhC
Confidence 3333344444444444444433332 223334444444444444444444444444332211 23333333344444444
Q ss_pred HHHHHHHHHHH
Q 007695 448 LDKALNLLLEL 458 (592)
Q Consensus 448 ~~~A~~l~~~m 458 (592)
+++|...|++.
T Consensus 88 ~~~A~~~~~~a 98 (126)
T 3upv_A 88 YASALETLDAA 98 (126)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 157
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.95 E-value=0.00024 Score=60.59 Aligned_cols=96 Identities=9% Similarity=-0.154 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007695 467 PATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIING 546 (592)
Q Consensus 467 ~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a 546 (592)
...+..+...+...|++++|...|+........ +...+..+..+|...|++++|...++.....+ +.++..|..+..+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHH
Confidence 334444444444444444444444444443322 34444444444444555555555444444432 2234444444444
Q ss_pred HHhCCCHHHHHHHHHHHH
Q 007695 547 LLAGGFLQDAQRVHGLME 564 (592)
Q Consensus 547 ~~~~g~~~~A~~l~~~m~ 564 (592)
|...|++++|+..|++..
T Consensus 87 ~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHH
Confidence 555555555555444443
No 158
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.95 E-value=0.00015 Score=62.96 Aligned_cols=92 Identities=12% Similarity=-0.063 Sum_probs=44.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC
Q 007695 437 SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516 (592)
Q Consensus 437 ~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g 516 (592)
.+...+.+.|++++|...|+...... +.+...+..+..++...|++++|...|++....... +...+..+..+|...|
T Consensus 23 ~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g 100 (142)
T 2xcb_A 23 ALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECHLQLG 100 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHcC
Confidence 34444455555555555555544422 123444444455555555555555555555444332 3344444555555555
Q ss_pred CHHHHHHHHHHHHH
Q 007695 517 IEKKALQALGFLEA 530 (592)
Q Consensus 517 ~~~~A~~~~~~m~~ 530 (592)
++++|...|+....
T Consensus 101 ~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 101 DLDGAESGFYSARA 114 (142)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555554443
No 159
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.94 E-value=0.00026 Score=62.83 Aligned_cols=97 Identities=10% Similarity=0.035 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007695 327 KKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEA 406 (592)
Q Consensus 327 ~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~ 406 (592)
...|..+...+.+.|++++|+..|++.++.. +-+...|..+..+|.+.|++++|...|+...... +.+...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3344455555555555555555555554432 1144445555555555555555555555554443 3334445555555
Q ss_pred HHHcCCHHHHHHHHHHHHH
Q 007695 407 YGQAGDPDQARSNFDYMIR 425 (592)
Q Consensus 407 ~~~~g~~~~A~~lf~~m~~ 425 (592)
|...|++++|...|++...
T Consensus 89 ~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHH
Confidence 5555555555555554444
No 160
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.93 E-value=0.00022 Score=60.65 Aligned_cols=59 Identities=7% Similarity=-0.122 Sum_probs=26.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007695 365 YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMI 424 (592)
Q Consensus 365 ~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~ 424 (592)
+..+...+.+.|++++|...|++..... +.+..+|+.+..+|.+.|++++|+..|++..
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 3334444444444444444444444433 3334444444444444444444444444443
No 161
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.93 E-value=8.6e-05 Score=60.41 Aligned_cols=99 Identities=7% Similarity=-0.054 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHH
Q 007695 257 VRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQP--DKKVYNSMI 334 (592)
Q Consensus 257 ~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p--d~~t~~~li 334 (592)
...+..+...+.+.|++++|...|++..+.. +.+...+..+...+...|++++|...|++..+.. +. +..++..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 3455666667777777777777777776653 2256667777777777777777777777777653 33 466777777
Q ss_pred HHHHHc-CCchHHHHHHHHHHHCC
Q 007695 335 MAYVNA-GQPKLGMSLVDMMITSG 357 (592)
Q Consensus 335 ~a~~~~-g~~~~A~~l~~~m~~~g 357 (592)
.++... |++++|.+.++......
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcc
Confidence 777777 77777777777776543
No 162
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.92 E-value=0.00033 Score=60.29 Aligned_cols=98 Identities=12% Similarity=-0.042 Sum_probs=56.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 007695 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPD----IVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYN 331 (592)
Q Consensus 256 ~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd----~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~ 331 (592)
+...+..+...+.+.|++++|.+.|++..+. .|+ ...|..+..+|...|++++|...|++..+.. +.+...|.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 4555566666666666666666666666553 344 4555555666666666666666666655432 23455555
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHC
Q 007695 332 SMIMAYVNAGQPKLGMSLVDMMITS 356 (592)
Q Consensus 332 ~li~a~~~~g~~~~A~~l~~~m~~~ 356 (592)
.+..+|...|++++|...|++....
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 5555666666666666666655543
No 163
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.91 E-value=0.00023 Score=60.59 Aligned_cols=103 Identities=12% Similarity=-0.041 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCC----HHHHHH
Q 007695 469 TYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKE--QMG----PDDFER 542 (592)
Q Consensus 469 ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~--~~~----~~~~~~ 542 (592)
.+..+...+.+.|++++|...|++.++.... +...|..+..+|...|++++|+..+++..+.+. ..+ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 4455566666777777777777776665443 566677777777777777777777766654311 111 124566
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHH
Q 007695 543 IINGLLAGGFLQDAQRVHGLMEAQGFAASERL 574 (592)
Q Consensus 543 li~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~ 574 (592)
+..++...|++++|++.|++.+.. .||+.+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~ 118 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE--FRDPEL 118 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--SCCHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CcCHHH
Confidence 667777777777777777776653 455533
No 164
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.91 E-value=0.00027 Score=62.81 Aligned_cols=99 Identities=10% Similarity=0.019 Sum_probs=59.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007695 291 DIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370 (592)
Q Consensus 291 d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~ 370 (592)
+...|..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|+..|++.+... +-+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34455556666666666666666666665543 3355566666666666666666666666666543 224556666666
Q ss_pred HHHhCCCHHHHHHHHHHHHHc
Q 007695 371 SFAQCGDVRGAGQITNIMRIE 391 (592)
Q Consensus 371 ~~~~~g~~~~A~~~~~~m~~~ 391 (592)
+|...|++++|...|++....
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 666666666666666665554
No 165
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.90 E-value=0.00031 Score=59.80 Aligned_cols=96 Identities=8% Similarity=-0.076 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007695 327 KKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEA 406 (592)
Q Consensus 327 ~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~ 406 (592)
...|..+...+...|++++|...|.+..... +.+...+..+..+|...|++++|...++...... +.+...+..+..+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHH
Confidence 3334444444444444444444444443322 1133344444444444444444444444444332 2233444444444
Q ss_pred HHHcCCHHHHHHHHHHHH
Q 007695 407 YGQAGDPDQARSNFDYMI 424 (592)
Q Consensus 407 ~~~~g~~~~A~~lf~~m~ 424 (592)
|...|++++|...|.+..
T Consensus 87 ~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHH
Confidence 444444444444444433
No 166
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.90 E-value=0.00073 Score=70.05 Aligned_cols=197 Identities=10% Similarity=0.026 Sum_probs=139.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCC
Q 007695 264 IDAHAKENCLEDAERILKKMNENGIVPD----------------IVTSTVLVHMYSKAGNLDRAKEAFESLRSH-GFQPD 326 (592)
Q Consensus 264 i~~~~~~g~~~~A~~l~~~m~~~g~~pd----------------~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~-g~~pd 326 (592)
...+.+.|++++|.+.|..+.+...... ...+..|...|.+.|++++|.+.+..+... +..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3456788999999999999887532211 124678899999999999999999887642 11122
Q ss_pred H----HHHHHHHHHHHHcCCchHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc--CC--
Q 007695 327 K----KVYNSMIMAYVNAGQPKLGMSLVDMMIT----SGIERS-EEIYLALLRSFAQCGDVRGAGQITNIMRIE--EF-- 393 (592)
Q Consensus 327 ~----~t~~~li~a~~~~g~~~~A~~l~~~m~~----~g~~p~-~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~--g~-- 393 (592)
. .+.+.+-..+...|+++.|..++..... .+..+. ..++..+...|...|++++|..++.++... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 2 1233333444456888999998887754 232332 567788999999999999999999987653 11
Q ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CC-CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007695 394 QP-TLESCTLLVEAYGQAGDPDQARSNFDYMIRL--GH-KPD---DRCTASMIAAYGKKNLLDKALNLLLELEK 460 (592)
Q Consensus 394 ~~-~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~--g~-~pd---~~t~~~li~a~~~~g~~~~A~~l~~~m~~ 460 (592)
.+ ...++..++..|...|++++|..++++.... .. .|. ...+..+...+...|++++|...|.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11 2567888999999999999999999887652 12 221 24566667777888999999988877654
No 167
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.89 E-value=0.00014 Score=60.94 Aligned_cols=58 Identities=17% Similarity=0.197 Sum_probs=23.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007695 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESL 318 (592)
Q Consensus 260 y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m 318 (592)
|..+...+...|++++|...|++..... +.+...+..+...|...|++++|...|++.
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 64 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKA 64 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3333444444444444444444443321 113333334444444444444444444433
No 168
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.88 E-value=0.00016 Score=60.61 Aligned_cols=96 Identities=16% Similarity=0.108 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCC----HHHHHH
Q 007695 364 IYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGH--KPD----DRCTAS 437 (592)
Q Consensus 364 t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~--~pd----~~t~~~ 437 (592)
.+..+...+...|+++.|...+....... +.+...+..+...|...|++++|...|++...... .++ ..++..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 33444444444455555555554444433 33344444445555555555555555544443211 111 333444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 007695 438 MIAAYGKKNLLDKALNLLLELEK 460 (592)
Q Consensus 438 li~a~~~~g~~~~A~~l~~~m~~ 460 (592)
+..+|...|++++|...|....+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 44444445555555555544444
No 169
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.88 E-value=0.00058 Score=70.83 Aligned_cols=165 Identities=8% Similarity=-0.100 Sum_probs=85.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC-HHH
Q 007695 400 CTLLVEAYGQAGDPDQARSNFDYMIRL-GHKPDDR----CTASMIAAYGKKNLLDKALNLLLELEK----DGFEPG-PAT 469 (592)
Q Consensus 400 ~~~Li~~~~~~g~~~~A~~lf~~m~~~-g~~pd~~----t~~~li~a~~~~g~~~~A~~l~~~m~~----~g~~p~-~~t 469 (592)
+..+...|.+.|++++|...+..+... +..++.. ..+.+-..+...|+.+.|..++..... .+..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 445566666666666666666555441 1111111 112222223344666666666655432 122222 345
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCC----HH
Q 007695 470 YTVLVDWLGRLQLINEAEQLLGKISEL----GEAP-PFKIQVSLCDMYARAGIEKKALQALGFLEAKK--EQMG----PD 538 (592)
Q Consensus 470 y~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~--~~~~----~~ 538 (592)
+..+...+...|++++|..+++.+... +..+ ...++..++..|...|++++|..++++..... ...+ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 566666667777777777666665432 1111 23456666677777777777777766554311 1111 12
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHH
Q 007695 539 DFERIINGLLAGGFLQDAQRVHGLME 564 (592)
Q Consensus 539 ~~~~li~a~~~~g~~~~A~~l~~~m~ 564 (592)
.+..++..+...|++++|...|.+..
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34445555666677777766665554
No 170
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.88 E-value=0.00063 Score=58.43 Aligned_cols=96 Identities=13% Similarity=-0.088 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 007695 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPG----PATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSL 508 (592)
Q Consensus 433 ~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~----~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~L 508 (592)
..+..+...+...|++++|...|++..+. .|+ ...+..+..++...|++++|...+++....... +...+..+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~ 105 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHHHH
Confidence 34444444444555555555555544432 233 334444444455555555555555554443222 34445555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHc
Q 007695 509 CDMYARAGIEKKALQALGFLEAK 531 (592)
Q Consensus 509 i~~~~~~g~~~~A~~~~~~m~~~ 531 (592)
..+|...|++++|...|++....
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHc
Confidence 55555555555555555555443
No 171
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.87 E-value=0.00027 Score=61.26 Aligned_cols=87 Identities=15% Similarity=0.023 Sum_probs=34.3
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 007695 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLD 449 (592)
Q Consensus 370 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~ 449 (592)
..+.+.|++++|...|+...... +.+...|..+..+|.+.|++++|...|+......+. +...+..+..+|...|+++
T Consensus 26 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~ 103 (142)
T 2xcb_A 26 FNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECHLQLGDLD 103 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHcCCHH
Confidence 33344444444444444443332 223334444444444444444444444444332221 2233333333444444444
Q ss_pred HHHHHHHHH
Q 007695 450 KALNLLLEL 458 (592)
Q Consensus 450 ~A~~l~~~m 458 (592)
+|...|+..
T Consensus 104 ~A~~~~~~a 112 (142)
T 2xcb_A 104 GAESGFYSA 112 (142)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444433
No 172
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.85 E-value=0.00011 Score=59.64 Aligned_cols=26 Identities=15% Similarity=0.160 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007695 399 SCTLLVEAYGQAGDPDQARSNFDYMI 424 (592)
Q Consensus 399 ~~~~Li~~~~~~g~~~~A~~lf~~m~ 424 (592)
.+..+...|...|++++|...|++..
T Consensus 42 ~~~~~a~~~~~~~~~~~A~~~~~~a~ 67 (112)
T 2kck_A 42 YWLMKGKALYNLERYEEAVDCYNYVI 67 (112)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 173
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.70 E-value=0.00033 Score=59.06 Aligned_cols=92 Identities=11% Similarity=-0.134 Sum_probs=59.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Q 007695 472 VLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGG 551 (592)
Q Consensus 472 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g 551 (592)
.+...+.+.|++++|...+++..+.... +...|..+..++...|++++|...|++....+ +-++..|..+..+|...|
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 3445566666777777777666665443 56666666677777777777777777666652 234556666666777777
Q ss_pred CHHHHHHHHHHHHH
Q 007695 552 FLQDAQRVHGLMEA 565 (592)
Q Consensus 552 ~~~~A~~l~~~m~~ 565 (592)
++++|+..|++..+
T Consensus 100 ~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 100 NANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHH
Confidence 77777777766654
No 174
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.69 E-value=0.00032 Score=60.91 Aligned_cols=61 Identities=11% Similarity=-0.043 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007695 399 SCTLLVEAYGQAGDPDQARSNFDYMIRLGH-KPD----DRCTASMIAAYGKKNLLDKALNLLLELE 459 (592)
Q Consensus 399 ~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~-~pd----~~t~~~li~a~~~~g~~~~A~~l~~~m~ 459 (592)
++..+...|...|++++|...+++...... .++ ..++..+...|...|++++|...+++..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 76 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTL 76 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444555555555555555555555443210 011 1234444555555555555555555543
No 175
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.68 E-value=0.00038 Score=60.45 Aligned_cols=131 Identities=17% Similarity=0.051 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCCchHHHHHHHHHHHCC----CCC-CHH
Q 007695 294 TSTVLVHMYSKAGNLDRAKEAFESLRSHGF-QPD----KKVYNSMIMAYVNAGQPKLGMSLVDMMITSG----IER-SEE 363 (592)
Q Consensus 294 ~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~-~pd----~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g----~~p-~~~ 363 (592)
++..+...|...|++++|...|++..+..- .++ ..++..+...|...|++++|...+++..... ..+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 344444455555555555555544432100 001 1244444455555555555555554443310 000 022
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007695 364 IYLALLRSFAQCGDVRGAGQITNIMRIE----EFQ-PTLESCTLLVEAYGQAGDPDQARSNFDYMI 424 (592)
Q Consensus 364 t~~~Ll~~~~~~g~~~~A~~~~~~m~~~----g~~-~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~ 424 (592)
++..+...+...|++++|...+++.... +.. ....++..+...|...|++++|...+++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3344444444555555555444443321 000 002233444444445555555555444433
No 176
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.65 E-value=0.00048 Score=57.98 Aligned_cols=60 Identities=13% Similarity=0.010 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007695 363 EIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM 423 (592)
Q Consensus 363 ~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m 423 (592)
..+..+..++...|++++|...|++..... +.+...+..+..+|.+.|++++|...|++.
T Consensus 52 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~a 111 (121)
T 1hxi_A 52 EAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAALASLRAW 111 (121)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333333333333344444444333333332 223333333333444444444444444333
No 177
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.61 E-value=0.0022 Score=53.73 Aligned_cols=23 Identities=26% Similarity=0.291 Sum_probs=9.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 007695 297 VLVHMYSKAGNLDRAKEAFESLR 319 (592)
Q Consensus 297 ~Li~~~~~~g~~~~A~~~~~~m~ 319 (592)
.+..++...|++++|...|+...
T Consensus 44 ~lg~~~~~~~~~~~A~~~~~~~~ 66 (129)
T 2xev_A 44 WLGESYYATRNFQLAEAQFRDLV 66 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHH
Confidence 33334444444444444444433
No 178
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.60 E-value=0.0015 Score=54.80 Aligned_cols=88 Identities=14% Similarity=-0.027 Sum_probs=39.8
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHh
Q 007695 476 WLGRLQLINEAEQLLGKISELGEAPPF---KIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG---PDDFERIINGLLA 549 (592)
Q Consensus 476 ~~~~~g~~~~A~~l~~~m~~~g~~p~~---~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~a~~~ 549 (592)
.+...|++++|...++.+.+.... +. ..+..+..+|...|++++|...|+.+..... .+ +..+..+..+|..
T Consensus 11 ~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~la~~~~~ 88 (129)
T 2xev_A 11 DALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYP-THDKAAGGLLKLGLSQYG 88 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TSTTHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHH
Confidence 344444444444444444443221 11 3444444445555555555555555444321 11 3334444555555
Q ss_pred CCCHHHHHHHHHHHHH
Q 007695 550 GGFLQDAQRVHGLMEA 565 (592)
Q Consensus 550 ~g~~~~A~~l~~~m~~ 565 (592)
.|++++|...|+++..
T Consensus 89 ~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 89 EGKNTEAQQTLQQVAT 104 (129)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555555544
No 179
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.59 E-value=0.00057 Score=72.12 Aligned_cols=88 Identities=7% Similarity=-0.005 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007695 328 KVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAY 407 (592)
Q Consensus 328 ~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~ 407 (592)
.+|+.+..+|.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|...|+...+.. +.+..++..+..++
T Consensus 318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~ 395 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQ 395 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 344445555555555555555555554432 1244455555555555555555555555554432 22344455555555
Q ss_pred HHcCCHHHHH
Q 007695 408 GQAGDPDQAR 417 (592)
Q Consensus 408 ~~~g~~~~A~ 417 (592)
.+.++.+++.
T Consensus 396 ~~~~~~~~a~ 405 (457)
T 1kt0_A 396 KKAKEHNERD 405 (457)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 180
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.59 E-value=0.00084 Score=70.81 Aligned_cols=95 Identities=8% Similarity=0.055 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007695 362 EEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAA 441 (592)
Q Consensus 362 ~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a 441 (592)
..+|..+..+|.+.|++++|...++...... +.+..+|..+..+|...|++++|...|++..+..+. +...+..+..+
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~ 394 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMC 394 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 4567777777888888888888888777765 456777777777888888888888888777764332 34456666666
Q ss_pred HHhcCCHHHHH-HHHHHH
Q 007695 442 YGKKNLLDKAL-NLLLEL 458 (592)
Q Consensus 442 ~~~~g~~~~A~-~l~~~m 458 (592)
+.+.++.+++. .++..|
T Consensus 395 ~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 395 QKKAKEHNERDRRIYANM 412 (457)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 66666666554 334444
No 181
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.55 E-value=0.00083 Score=68.73 Aligned_cols=86 Identities=2% Similarity=-0.139 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007695 328 KVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAY 407 (592)
Q Consensus 328 ~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~ 407 (592)
.+|+.+..+|.+.|++++|+..+++.++.. +-+...|..+..+|...|++++|...|++..+.. +.+...+..+...+
T Consensus 274 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 274 SCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 344455555555555555555555554432 1134444555555555555555555555544442 22344444444444
Q ss_pred HHcCCHHH
Q 007695 408 GQAGDPDQ 415 (592)
Q Consensus 408 ~~~g~~~~ 415 (592)
...++.++
T Consensus 352 ~~~~~~~~ 359 (370)
T 1ihg_A 352 QKIKAQKD 359 (370)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444333
No 182
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.51 E-value=0.00027 Score=58.91 Aligned_cols=85 Identities=18% Similarity=0.113 Sum_probs=46.2
Q ss_pred cCCchHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007695 340 AGQPKLGMSLVDMMITSG--IERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQAR 417 (592)
Q Consensus 340 ~g~~~~A~~l~~~m~~~g--~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~ 417 (592)
.|++++|+..|++.++.+ -+-+..++..+..+|...|++++|...|++..+.. +-+..++..+..+|.+.|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 355555666665555532 11134455555566666666666666666665554 344556666666666666666666
Q ss_pred HHHHHHHH
Q 007695 418 SNFDYMIR 425 (592)
Q Consensus 418 ~lf~~m~~ 425 (592)
..|++...
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666555
No 183
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.50 E-value=0.00024 Score=75.52 Aligned_cols=118 Identities=13% Similarity=0.048 Sum_probs=62.2
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHH
Q 007695 301 MYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRG 380 (592)
Q Consensus 301 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~ 380 (592)
.+.+.|++++|.+.|++..+.. +.+..+|..+..+|.+.|++++|+..+++..+.. +-+..++..+..+|...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 3444555556665555555432 2345555666666666666666666666665543 2245556666666666666666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHH
Q 007695 381 AGQITNIMRIEEFQPTLESCTLLVEA--YGQAGDPDQARSNFD 421 (592)
Q Consensus 381 A~~~~~~m~~~g~~~~~~~~~~Li~~--~~~~g~~~~A~~lf~ 421 (592)
|.+.|++..+.. +.+...+..+..+ +.+.|++++|...++
T Consensus 93 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 666666665543 2233344444443 666666777776666
No 184
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.49 E-value=0.0016 Score=57.55 Aligned_cols=62 Identities=16% Similarity=0.090 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007695 398 ESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEK 460 (592)
Q Consensus 398 ~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~ 460 (592)
..|..+..+|.+.|++++|...++......+. +...|..+..+|...|++++|...|....+
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 44555555555555555555555555553221 344555555555555555555555555544
No 185
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.49 E-value=0.00018 Score=59.99 Aligned_cols=86 Identities=14% Similarity=0.076 Sum_probs=54.2
Q ss_pred cCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHH
Q 007695 270 ENCLEDAERILKKMNENGI--VPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGM 347 (592)
Q Consensus 270 ~g~~~~A~~l~~~m~~~g~--~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~ 347 (592)
.|++++|+..|++..+.+. +-+...+..+..+|...|++++|...|++..+.. +-+..++..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 4667777777777766431 2234556667777777777777777777776553 345666777777777777777777
Q ss_pred HHHHHHHHC
Q 007695 348 SLVDMMITS 356 (592)
Q Consensus 348 ~l~~~m~~~ 356 (592)
..+++....
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777766654
No 186
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.48 E-value=0.00032 Score=74.53 Aligned_cols=121 Identities=12% Similarity=-0.006 Sum_probs=73.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 007695 404 VEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLI 483 (592)
Q Consensus 404 i~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~ 483 (592)
...|.+.|++++|...|++..+.... +..+|..+..+|.+.|++++|+..+++..+.. +.+...+..+..+|...|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 34556677777777777777664332 46667777777777777777777777776642 23456666777777777777
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHH
Q 007695 484 NEAEQLLGKISELGEAPPFKIQVSLCDM--YARAGIEKKALQALGF 527 (592)
Q Consensus 484 ~~A~~l~~~m~~~g~~p~~~~~~~Li~~--~~~~g~~~~A~~~~~~ 527 (592)
++|...+++..+.... +...+..+..+ +.+.|++++|.+.+++
T Consensus 91 ~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 91 RAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 7777777777665432 23344444444 6666777777766654
No 187
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.47 E-value=0.001 Score=68.11 Aligned_cols=123 Identities=9% Similarity=-0.013 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC---------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 007695 259 DYSKLIDAHAKENCLEDAERILKKMNEN---------------GIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGF 323 (592)
Q Consensus 259 ~y~~Li~~~~~~g~~~~A~~l~~~m~~~---------------g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~ 323 (592)
.+..+...+.+.|++++|...|++..+. --+-+..+|..+..+|.+.|++++|...+++..+..
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 303 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID- 303 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-
Confidence 4677888899999999999999988761 011246778899999999999999999999999864
Q ss_pred CCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 007695 324 QPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQ 383 (592)
Q Consensus 324 ~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~ 383 (592)
+.+..+|..+..+|...|++++|+..|++..+.. +-+...+..+..++...++.+++.+
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999999999999999998864 2367777777777777777666543
No 188
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.46 E-value=0.0015 Score=57.71 Aligned_cols=64 Identities=16% Similarity=0.196 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 007695 362 EEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426 (592)
Q Consensus 362 ~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~ 426 (592)
...|..+..+|.+.|++++|...++...... +.+...|..+..+|...|++++|...|++....
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 3566666777777777777777777777664 456677777777777777777777777777664
No 189
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.40 E-value=0.013 Score=63.47 Aligned_cols=171 Identities=6% Similarity=-0.129 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-
Q 007695 378 VRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGD----------PDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKN- 446 (592)
Q Consensus 378 ~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~----------~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g- 446 (592)
.++|.+.++.+.... +-+..+|+.--..+...|+ +++++..++.+....++ +..+|+.--.++.+.|
T Consensus 45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence 456677777777665 4456666666666666655 77777888777776554 6677777777777777
Q ss_pred -CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc---------
Q 007695 447 -LLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQ-LINEAEQLLGKISELGEAPPFKIQVSLCDMYARA--------- 515 (592)
Q Consensus 447 -~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~--------- 515 (592)
++++++.+++++.+.. +-|...|+.-..++.+.| .++++.+.+.++.+..+. |...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccccccc
Confidence 6678888888777653 235566666666666777 777788888777776655 777777776666653
Q ss_pred -----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCH
Q 007695 516 -----GIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFL 553 (592)
Q Consensus 516 -----g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~ 553 (592)
+.++++.+.+++....+ +-+...|+.+...+.+.++.
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCC
T ss_pred ccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCc
Confidence 45678888888777653 34677788777777666653
No 190
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.36 E-value=0.00046 Score=69.71 Aligned_cols=60 Identities=20% Similarity=0.122 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007695 364 IYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMI 424 (592)
Q Consensus 364 t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~ 424 (592)
.|..+..+|.+.|++++|...++...... +.+..+|..+..+|...|++++|...|++..
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al 291 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQ 291 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444444444444444444444444432 2334444444444444444444444444443
No 191
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.29 E-value=0.0071 Score=52.03 Aligned_cols=110 Identities=10% Similarity=-0.127 Sum_probs=58.5
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCchHHH
Q 007695 272 CLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVN----AGQPKLGM 347 (592)
Q Consensus 272 ~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~----~g~~~~A~ 347 (592)
++++|.+.|++..+.| .|+.. |...|...+.+++|.+.|++..+.| +...++.|...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4555666666665554 22222 4444555555555666666555543 45555555555555 45555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcC
Q 007695 348 SLVDMMITSGIERSEEIYLALLRSFAQ----CGDVRGAGQITNIMRIEE 392 (592)
Q Consensus 348 ~l~~~m~~~g~~p~~~t~~~Ll~~~~~----~g~~~~A~~~~~~m~~~g 392 (592)
.+|++..+.| +...+..|...|.. .++.++|...|+...+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 5555555544 44455555555555 455555555555555444
No 192
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.27 E-value=0.015 Score=62.97 Aligned_cols=175 Identities=6% Similarity=-0.131 Sum_probs=134.2
Q ss_pred HcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007695 269 KENC-LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN----------LDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337 (592)
Q Consensus 269 ~~g~-~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~----------~~~A~~~~~~m~~~g~~pd~~t~~~li~a~ 337 (592)
+.|. -++|++.++.+...+.. +...|+.--.++...|+ ++++++.++.+.+.. +-+..+|+.-..++
T Consensus 40 ~~~~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l 117 (567)
T 1dce_A 40 QAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL 117 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3444 46788999988886433 56667766666666666 889999999988765 55778888888888
Q ss_pred HHcC--CchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc----
Q 007695 338 VNAG--QPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG-DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQA---- 410 (592)
Q Consensus 338 ~~~g--~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~---- 410 (592)
.+.+ +++++++.++++.+.+.. |..+|+.-...+.+.| .++++.+.++.+.+.. +-|..+|+.....+.+.
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQP 195 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCC
T ss_pred HHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccc
Confidence 8888 569999999999987654 7888888888888888 8889999988888776 56788888887777663
Q ss_pred ----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 007695 411 ----------GDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLL 448 (592)
Q Consensus 411 ----------g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~ 448 (592)
+.++++.+.+++.....+. |...|+-.-..+.+.+..
T Consensus 196 ~~~~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 196 DSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp CSSSCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCC
T ss_pred cccccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCc
Confidence 4578899999888876553 677787777777776663
No 193
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.26 E-value=0.003 Score=54.46 Aligned_cols=111 Identities=14% Similarity=0.044 Sum_probs=63.7
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----CCCHHHH
Q 007695 306 GNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ----CGDVRGA 381 (592)
Q Consensus 306 g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~----~g~~~~A 381 (592)
+++++|.+.|++..+.| .|+.. +...|...+.+++|.++|++..+.| +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 34566666666666655 33332 4445555555566666666666554 45555666666655 5566666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcC
Q 007695 382 GQITNIMRIEEFQPTLESCTLLVEAYGQ----AGDPDQARSNFDYMIRLG 427 (592)
Q Consensus 382 ~~~~~~m~~~g~~~~~~~~~~Li~~~~~----~g~~~~A~~lf~~m~~~g 427 (592)
...|+...+.| +...+..|...|.. .+++++|...|++..+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 66666665544 45555556666655 556666666666555543
No 194
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.26 E-value=0.00068 Score=68.43 Aligned_cols=150 Identities=9% Similarity=-0.061 Sum_probs=88.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007695 396 TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475 (592)
Q Consensus 396 ~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~ 475 (592)
....+..+...+.+.|++++|...|++.... .|+... +...|+..++...+. ...|..+..
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~ 238 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHH
Confidence 3577888889999999999999999998774 244332 233444444443221 136778888
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhCCCHH
Q 007695 476 WLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIING-LLAGGFLQ 554 (592)
Q Consensus 476 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a-~~~~g~~~ 554 (592)
+|.+.|++++|...+++..+.... +...|..+..+|...|++++|...|++..... +-++..+..+... ....+..+
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999998886544 78889999999999999999999999887652 2244455555554 34456777
Q ss_pred HHHHHHHHHHHC
Q 007695 555 DAQRVHGLMEAQ 566 (592)
Q Consensus 555 ~A~~l~~~m~~~ 566 (592)
.+.++|+.|...
T Consensus 317 ~a~~~~~~~l~~ 328 (338)
T 2if4_A 317 KQKEMYKGIFKG 328 (338)
T ss_dssp ------------
T ss_pred HHHHHHHHhhCC
Confidence 888888888654
No 195
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.20 E-value=0.0056 Score=53.95 Aligned_cols=101 Identities=11% Similarity=-0.099 Sum_probs=66.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCC------C-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCC
Q 007695 472 VLVDWLGRLQLINEAEQLLGKISELGEAP------P-----FKIQVSLCDMYARAGIEKKALQALGFLEAK-----KEQM 535 (592)
Q Consensus 472 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p------~-----~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~-----~~~~ 535 (592)
.....+.+.|++++|...|++.++..... + ...|..+..++.+.|++++|+..+++..+. ...|
T Consensus 16 ~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~p 95 (159)
T 2hr2_A 16 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ 95 (159)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCC
Confidence 34444555566666666666555432220 2 237778888888888888888888877764 0133
Q ss_pred -CHHHH----HHHHHHHHhCCCHHHHHHHHHHHHH-----CCCCCCH
Q 007695 536 -GPDDF----ERIINGLLAGGFLQDAQRVHGLMEA-----QGFAASE 572 (592)
Q Consensus 536 -~~~~~----~~li~a~~~~g~~~~A~~l~~~m~~-----~g~~pd~ 572 (592)
+...| .....++...|++++|+..|++.++ .|+.+..
T Consensus 96 d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~ 142 (159)
T 2hr2_A 96 DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGK 142 (159)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTH
T ss_pred chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 45567 8888999999999999999988764 3555554
No 196
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.10 E-value=0.0076 Score=53.10 Aligned_cols=61 Identities=13% Similarity=-0.011 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHc-------CCCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHH
Q 007695 364 IYLALLRSFAQCGDVRGAGQITNIMRIE-------EFQPTLESC----TLLVEAYGQAGDPDQARSNFDYMIR 425 (592)
Q Consensus 364 t~~~Ll~~~~~~g~~~~A~~~~~~m~~~-------g~~~~~~~~----~~Li~~~~~~g~~~~A~~lf~~m~~ 425 (592)
.|..+..++.+.|++++|...++..... . +-+...| .....++...|++++|+..|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4444555555555555555555544443 2 2223444 4555555555555555555554433
No 197
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.05 E-value=0.0032 Score=66.69 Aligned_cols=124 Identities=11% Similarity=-0.032 Sum_probs=62.3
Q ss_pred HHhcCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCC-C-CHHHHHH
Q 007695 442 YGKKNLLDKALNLLLELEKD---GFEPG----PATYTVLVDWLGRLQLINEAEQLLGKISEL-----GEA-P-PFKIQVS 507 (592)
Q Consensus 442 ~~~~g~~~~A~~l~~~m~~~---g~~p~----~~ty~~li~~~~~~g~~~~A~~l~~~m~~~-----g~~-p-~~~~~~~ 507 (592)
+...|++++|+.++.+..+. -+.|+ ..+++.|..+|...|++++|..++++..+. |.. | ...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34455666666555554331 11111 245555666666666666666665554321 221 1 1245556
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH---cCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 007695 508 LCDMYARAGIEKKALQALGFLEA---KKEQMG----PDDFERIINGLLAGGFLQDAQRVHGLMEA 565 (592)
Q Consensus 508 Li~~~~~~g~~~~A~~~~~~m~~---~~~~~~----~~~~~~li~a~~~~g~~~~A~~l~~~m~~ 565 (592)
|...|...|++++|..++++... .-..++ ..+.+.+-.++...+.+++|..+|+.+++
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666655432 111111 12234444555566666666666666654
No 198
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.03 E-value=0.0031 Score=66.83 Aligned_cols=124 Identities=6% Similarity=-0.093 Sum_probs=61.1
Q ss_pred HHHcCCHHHHHHHHHHHHhC---CCCC----CHHHHHHHHHHHHHcCCchHHHHHHHHHHHC-----C-CCC-CHHHHHH
Q 007695 302 YSKAGNLDRAKEAFESLRSH---GFQP----DKKVYNSMIMAYVNAGQPKLGMSLVDMMITS-----G-IER-SEEIYLA 367 (592)
Q Consensus 302 ~~~~g~~~~A~~~~~~m~~~---g~~p----d~~t~~~li~a~~~~g~~~~A~~l~~~m~~~-----g-~~p-~~~t~~~ 367 (592)
+...|++++|..++++.++. -+.| ...+++.|..+|...|++++|..++++.++. | -.| ...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34556666666666555421 1111 1345566666666666666666666554431 1 111 1334555
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHc-----CC-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007695 368 LLRSFAQCGDVRGAGQITNIMRIE-----EF-QP-TLESCTLLVEAYGQAGDPDQARSNFDYMIR 425 (592)
Q Consensus 368 Ll~~~~~~g~~~~A~~~~~~m~~~-----g~-~~-~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~ 425 (592)
|...|...|++++|..++.+.... |- .| ...+.+.+..++...+.+++|+.+|..+++
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556666666555555554321 20 11 123334445555555556666666555544
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.99 E-value=0.0035 Score=50.69 Aligned_cols=91 Identities=10% Similarity=0.023 Sum_probs=61.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-------HH
Q 007695 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPD-------KK 328 (592)
Q Consensus 256 ~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd-------~~ 328 (592)
+...+..+...+.+.|++++|...|++..+.. +.+...|..+..+|...|++++|...|++..+. .|+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHH
Confidence 34556677777777888888888888777653 226677777777888888888888888877765 333 44
Q ss_pred HHHHHHHHHHHcCCchHHHHH
Q 007695 329 VYNSMIMAYVNAGQPKLGMSL 349 (592)
Q Consensus 329 t~~~li~a~~~~g~~~~A~~l 349 (592)
.+..+..++...|+.+.|...
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~ 100 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVE 100 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhH
Confidence 555555666665655554433
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.95 E-value=0.0059 Score=50.18 Aligned_cols=78 Identities=13% Similarity=0.094 Sum_probs=41.5
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007695 346 GMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR 425 (592)
Q Consensus 346 A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~ 425 (592)
|+..|++..+.. +.+...+..+...|...|++++|...|+...... +.+...|..+..+|...|++++|...|++...
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444445444432 2244555555555555555555555555555543 33455555555566666666666666555544
No 201
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.94 E-value=0.0085 Score=46.36 Aligned_cols=79 Identities=18% Similarity=0.109 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007695 258 RDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337 (592)
Q Consensus 258 ~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~ 337 (592)
..+..+...+.+.|++++|...|++..+.. +.+...+..+..+|...|++++|...|++..+.. +.+..++..+..++
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 345555566666666666666666665542 1245555666666666666666666666655432 23444554444444
Q ss_pred H
Q 007695 338 V 338 (592)
Q Consensus 338 ~ 338 (592)
.
T Consensus 88 ~ 88 (91)
T 1na3_A 88 Q 88 (91)
T ss_dssp H
T ss_pred H
Confidence 3
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.90 E-value=0.00068 Score=55.12 Aligned_cols=61 Identities=11% Similarity=-0.127 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007695 469 TYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEA 530 (592)
Q Consensus 469 ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~ 530 (592)
.+..+...+...|++++|...+++..+.... +...+..+..+|...|++++|...+++...
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3444444444555555555555554443322 444455555555555555555555555544
No 203
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.88 E-value=0.012 Score=45.38 Aligned_cols=18 Identities=33% Similarity=0.591 Sum_probs=6.7
Q ss_pred HHHHHcCCHHHHHHHHHH
Q 007695 300 HMYSKAGNLDRAKEAFES 317 (592)
Q Consensus 300 ~~~~~~g~~~~A~~~~~~ 317 (592)
..+...|++++|...|++
T Consensus 17 ~~~~~~~~~~~A~~~~~~ 34 (91)
T 1na3_A 17 NAYYKQGDYDEAIEYYQK 34 (91)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHH
Confidence 333333333333333333
No 204
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.83 E-value=0.011 Score=48.49 Aligned_cols=79 Identities=14% Similarity=-0.083 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007695 450 KALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLE 529 (592)
Q Consensus 450 ~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~ 529 (592)
.|+..|++..+.. +.+...+..+..++...|++++|...+++....... +...|..+..+|...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455566555432 234556666666677777777777777776665433 45666666677777777777777766655
Q ss_pred H
Q 007695 530 A 530 (592)
Q Consensus 530 ~ 530 (592)
.
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 4
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.56 E-value=0.0053 Score=54.01 Aligned_cols=100 Identities=12% Similarity=0.073 Sum_probs=66.9
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007695 268 AKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNL----------DRAKEAFESLRSHGFQPDKKVYNSMIMAY 337 (592)
Q Consensus 268 ~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~----------~~A~~~~~~m~~~g~~pd~~t~~~li~a~ 337 (592)
.+.+.+++|.+.++...+.... +...|+.+..++...+++ ++|+..|++..+.. +.+..+|+.+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 3455677888888877776433 677777777777777654 47888888777654 44567777788887
Q ss_pred HHcC-----------CchHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007695 338 VNAG-----------QPKLGMSLVDMMITSGIERSEEIYLALLRS 371 (592)
Q Consensus 338 ~~~g-----------~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~ 371 (592)
...| ++++|++.|++.++. .|+...|...+..
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~ 133 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 7654 677777777777763 4555555444443
No 206
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.44 E-value=0.016 Score=46.40 Aligned_cols=63 Identities=10% Similarity=0.005 Sum_probs=31.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007695 396 TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELE 459 (592)
Q Consensus 396 ~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~ 459 (592)
+...+..+...|.+.|++++|...|++.....+. +...|..+..+|...|++++|...|++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444555555555555555555555555543322 33344445555555555555555555443
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.39 E-value=0.019 Score=45.95 Aligned_cols=62 Identities=16% Similarity=0.067 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007695 467 PATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLE 529 (592)
Q Consensus 467 ~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~ 529 (592)
...+..+..+|...|++++|...|++..+.... +...|..+..+|...|++++|...|++..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444555555555555555555555444332 33445555555555555555555554443
No 208
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.36 E-value=0.009 Score=52.53 Aligned_cols=54 Identities=19% Similarity=0.246 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHCCCCCCHHHHH
Q 007695 415 QARSNFDYMIRLGHKPDDRCTASMIAAYGKK-----------NLLDKALNLLLELEKDGFEPGPATYT 471 (592)
Q Consensus 415 ~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~-----------g~~~~A~~l~~~m~~~g~~p~~~ty~ 471 (592)
+|+..|++..+..+. +..+|..+-.+|... |++++|+..|++..+ +.|+...|.
T Consensus 64 eAi~~le~AL~ldP~-~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~ 128 (158)
T 1zu2_A 64 EAITKFEEALLIDPK-KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYL 128 (158)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHH
T ss_pred HHHHHHHHHHHhCcC-cHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHH
Confidence 555555554443222 334444444444443 255555555555554 334444443
No 209
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.49 E-value=0.14 Score=57.41 Aligned_cols=154 Identities=12% Similarity=-0.020 Sum_probs=84.7
Q ss_pred HHHHHcCCchHHHH-HHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 007695 335 MAYVNAGQPKLGMS-LVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDP 413 (592)
Q Consensus 335 ~a~~~~g~~~~A~~-l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~ 413 (592)
......+++++|.+ ++.. + ++......++..+.+.|.++.|.++.+.-. .-.......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~-----i-~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPN-----V-EGKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGG-----C-CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhc-----C-CchHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCH
Confidence 33445677777765 4421 1 112334777777777888777776553211 112345567888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007695 414 DQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493 (592)
Q Consensus 414 ~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m 493 (592)
+.|.++.+.+ .+...|..+...+.+.|+++.|...|.++.. |..+...+...++.+...++.+..
T Consensus 669 ~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a 733 (814)
T 3mkq_A 669 TLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDA 733 (814)
T ss_dssp HHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHH
Confidence 8887775433 4667788888888888888888877776632 333444444455555544444333
Q ss_pred HhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007695 494 SELGEAPPFKIQVSLCDMYARAGIEKKALQALGF 527 (592)
Q Consensus 494 ~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~ 527 (592)
...|. ++.-..+|.+.|++++|.+++..
T Consensus 734 ~~~~~------~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 734 ETTGK------FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHcCc------hHHHHHHHHHcCCHHHHHHHHHH
Confidence 33221 12223334445555555555443
No 210
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.46 E-value=0.42 Score=53.49 Aligned_cols=46 Identities=15% Similarity=-0.044 Sum_probs=26.4
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007695 372 FAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM 423 (592)
Q Consensus 372 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m 423 (592)
....|+++.|.++.+.+ .+...|..+...+.+.|+++.|...|..+
T Consensus 662 ~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 34456666666554332 24556666666666666666666666655
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.22 E-value=0.35 Score=48.53 Aligned_cols=73 Identities=15% Similarity=0.062 Sum_probs=47.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 007695 464 EPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDF 540 (592)
Q Consensus 464 ~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 540 (592)
..+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|...+++.... .|...+|
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~ 346 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTL 346 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChH
Confidence 4456666666655666677777777777777664 56666666667777777777777777766664 3344443
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.13 E-value=0.074 Score=55.24 Aligned_cols=87 Identities=7% Similarity=0.002 Sum_probs=60.4
Q ss_pred HcCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----CC-CCCC-HHHHHHHH
Q 007695 269 KENCLEDAERILKKMNEN---GIVPD----IVTSTVLVHMYSKAGNLDRAKEAFESLRS-----HG-FQPD-KKVYNSMI 334 (592)
Q Consensus 269 ~~g~~~~A~~l~~~m~~~---g~~pd----~~~~~~Li~~~~~~g~~~~A~~~~~~m~~-----~g-~~pd-~~t~~~li 334 (592)
..|++++|+.++++..+. -+.|+ ..+++.|..+|...|++++|..++++.+. .| -.|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 357788888888876542 12222 45688888888888888888888887753 12 1222 34677788
Q ss_pred HHHHHcCCchHHHHHHHHHHH
Q 007695 335 MAYVNAGQPKLGMSLVDMMIT 355 (592)
Q Consensus 335 ~a~~~~g~~~~A~~l~~~m~~ 355 (592)
..|...|++++|+.++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 888888888888877777654
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.12 E-value=0.078 Score=41.66 Aligned_cols=56 Identities=18% Similarity=0.002 Sum_probs=31.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 007695 475 DWLGRLQLINEAEQLLGKISELGEAPPFK-IQVSLCDMYARAGIEKKALQALGFLEAK 531 (592)
Q Consensus 475 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-~~~~Li~~~~~~g~~~~A~~~~~~m~~~ 531 (592)
..+...|++++|...+++..+.... +.. .+..+..+|...|++++|...|++....
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3445555666666666655554332 444 5555666666666666666666665554
No 214
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.02 E-value=0.076 Score=55.16 Aligned_cols=91 Identities=9% Similarity=-0.049 Sum_probs=52.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCC---CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----C-CCCC-HHH
Q 007695 264 IDAHAKENCLEDAERILKKMNENG---IVPD----IVTSTVLVHMYSKAGNLDRAKEAFESLRSH-----G-FQPD-KKV 329 (592)
Q Consensus 264 i~~~~~~g~~~~A~~l~~~m~~~g---~~pd----~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~-----g-~~pd-~~t 329 (592)
+..+.+.|++++|+.++++..+.. +.|+ ..+++.|...|...|++++|..++++.+.. | -.|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 344556667777777777665431 1222 345666777777777777777766665421 1 0111 235
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHH
Q 007695 330 YNSMIMAYVNAGQPKLGMSLVDMMI 354 (592)
Q Consensus 330 ~~~li~a~~~~g~~~~A~~l~~~m~ 354 (592)
++.|...|...|++++|+.++++..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 6666666666666666666665554
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.02 E-value=0.17 Score=52.44 Aligned_cols=88 Identities=14% Similarity=-0.030 Sum_probs=42.9
Q ss_pred HHHcCCHHHHHHHHHHHHhcC---CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCC-CH---HHHHH
Q 007695 477 LGRLQLINEAEQLLGKISELG---EAP----PFKIQVSLCDMYARAGIEKKALQALGFLEAK---KEQM-GP---DDFER 542 (592)
Q Consensus 477 ~~~~g~~~~A~~l~~~m~~~g---~~p----~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~---~~~~-~~---~~~~~ 542 (592)
+.+.|++++|..++++..+.. +.| ...+++.|...|...|++++|..++++.... -..+ .+ .+++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 444555555555555554321 111 1234555555566666666666655544321 0111 11 23555
Q ss_pred HHHHHHhCCCHHHHHHHHHHHH
Q 007695 543 IINGLLAGGFLQDAQRVHGLME 564 (592)
Q Consensus 543 li~a~~~~g~~~~A~~l~~~m~ 564 (592)
|...|...|++++|..++++..
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHH
Confidence 6666666666666666655543
No 216
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.00 E-value=0.15 Score=39.86 Aligned_cols=56 Identities=25% Similarity=0.305 Sum_probs=28.8
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 007695 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLE-SCTLLVEAYGQAGDPDQARSNFDYMIRL 426 (592)
Q Consensus 370 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~Li~~~~~~g~~~~A~~lf~~m~~~ 426 (592)
..+.+.|++++|...++...... +.+.. .+..+..+|...|++++|...|++....
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 33444555555555555555443 23344 5555555555555555555555555543
No 217
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=94.96 E-value=0.06 Score=55.92 Aligned_cols=24 Identities=0% Similarity=-0.146 Sum_probs=12.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHH
Q 007695 540 FERIINGLLAGGFLQDAQRVHGLM 563 (592)
Q Consensus 540 ~~~li~a~~~~g~~~~A~~l~~~m 563 (592)
++.|...|...|++++|..+|++.
T Consensus 385 l~nLa~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 385 WLKLGRLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHH
Confidence 444555555555555555555443
No 218
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=94.81 E-value=1.1 Score=44.97 Aligned_cols=64 Identities=19% Similarity=0.036 Sum_probs=36.1
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007695 360 RSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR 425 (592)
Q Consensus 360 p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~ 425 (592)
.+..+|..+...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.|++...
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 345555555544444566666666666655553 4555555555555666666666666655554
No 219
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.39 E-value=1.1 Score=39.73 Aligned_cols=130 Identities=10% Similarity=-0.097 Sum_probs=87.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 007695 404 VEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLI 483 (592)
Q Consensus 404 i~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~ 483 (592)
.....+.|+++.|.++.+.+ -+...|..+-......|+++-|...|.+... +..+.-.|...|+.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDV 76 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCH
T ss_pred HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCH
Confidence 34556789999998887765 4788899999999999999999988887532 33444456667787
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 007695 484 NEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLM 563 (592)
Q Consensus 484 ~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m 563 (592)
+...++-+.....|- ++.-...+.-.|+++++.++|.+... |.--+......|-.+.|.++.+++
T Consensus 77 e~L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~~r---------~~eA~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 77 NKLSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEGGS---------LPLAYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTTC---------HHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHCCC---------hHHHHHHHHHcCcHHHHHHHHHHh
Confidence 776666555554431 34445556678899999888755421 111122223467777888777665
No 220
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.19 E-value=0.43 Score=37.57 Aligned_cols=65 Identities=6% Similarity=-0.091 Sum_probs=36.0
Q ss_pred CHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 007695 361 SEEIYLALLRSFAQCGD---VRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426 (592)
Q Consensus 361 ~~~t~~~Ll~~~~~~g~---~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~ 426 (592)
|...+..+..++...++ .++|..++++..... +-+..+...+...+.+.|++++|...|+.+...
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 44455555555543333 455666666655554 444555555566666666666666666666553
No 221
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=93.78 E-value=0.52 Score=37.73 Aligned_cols=67 Identities=15% Similarity=0.059 Sum_probs=42.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 007695 255 TNVRDYSKLIDAHAKENCLEDAERILKKMNENG------IVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSH 321 (592)
Q Consensus 255 p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g------~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~ 321 (592)
.+...+..|...+.+.+++..|...|+...+.- -.+....+..|..+|.+.|+++.|...+++..+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 344556667777777777777777777655421 1224556666777777777777777777766654
No 222
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=93.74 E-value=0.43 Score=37.58 Aligned_cols=47 Identities=13% Similarity=-0.035 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007695 483 INEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEA 530 (592)
Q Consensus 483 ~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~ 530 (592)
.++|..++++....... +......+...+...|++++|...|+.+.+
T Consensus 25 ~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 25 TDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34444444444443333 344444444444444444444444444444
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=93.14 E-value=0.61 Score=40.40 Aligned_cols=80 Identities=13% Similarity=0.164 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---CchHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhCCCHHHHHHH
Q 007695 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAG---QPKLGMSLVDMMITSGIER--SEEIYLALLRSFAQCGDVRGAGQI 384 (592)
Q Consensus 310 ~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g---~~~~A~~l~~~m~~~g~~p--~~~t~~~Ll~~~~~~g~~~~A~~~ 384 (592)
.+.+.|.+....| .++..+...+..++++.+ +.++++.+|++..+.+ .| +...+-.|.-+|.+.|++++|.+.
T Consensus 16 ~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 16 KFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 3344444444333 245555555555555544 3335555555554432 12 233333444444555555555555
Q ss_pred HHHHHHc
Q 007695 385 TNIMRIE 391 (592)
Q Consensus 385 ~~~m~~~ 391 (592)
++.+.+.
T Consensus 94 ~~~lL~i 100 (152)
T 1pc2_A 94 VRGLLQT 100 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 5555544
No 224
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.07 E-value=1.9 Score=38.25 Aligned_cols=48 Identities=21% Similarity=0.169 Sum_probs=26.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007695 266 AHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319 (592)
Q Consensus 266 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~ 319 (592)
...+.|+++.|.++.+.+ -+...|..|.......|+++-|.+.|....
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 344555566655555443 145555566665556666665555555544
No 225
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=92.99 E-value=0.63 Score=40.30 Aligned_cols=21 Identities=19% Similarity=0.135 Sum_probs=9.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 007695 440 AAYGKKNLLDKALNLLLELEK 460 (592)
Q Consensus 440 ~a~~~~g~~~~A~~l~~~m~~ 460 (592)
-+|.+.|++++|.++++.+.+
T Consensus 79 v~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 79 VGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp HHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHh
Confidence 344444444444444444444
No 226
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=92.39 E-value=1.3 Score=35.20 Aligned_cols=21 Identities=10% Similarity=-0.024 Sum_probs=8.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHH
Q 007695 297 VLVHMYSKAGNLDRAKEAFES 317 (592)
Q Consensus 297 ~Li~~~~~~g~~~~A~~~~~~ 317 (592)
.|...+.+.|++..|...|+.
T Consensus 10 ~lG~~~~~~~~y~~A~~W~~~ 30 (104)
T 2v5f_A 10 ELGKVAYTEADYYHTELWMEQ 30 (104)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHH
Confidence 333333334444444433333
No 227
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=91.96 E-value=1.2 Score=43.00 Aligned_cols=66 Identities=20% Similarity=0.078 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHCCCC
Q 007695 504 IQVSLCDMYARA-----GIEKKALQALGFLEAKKEQMGPDDFERIINGLLAG-GFLQDAQRVHGLMEAQGFA 569 (592)
Q Consensus 504 ~~~~Li~~~~~~-----g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~-g~~~~A~~l~~~m~~~g~~ 569 (592)
.|..|...|... |+.++|.+.|++..+.+..-+..++..+...++.. |+.+++.+.+++.+.....
T Consensus 201 A~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 201 VWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 444444444442 44444444444444432222234444444444442 4444444444444444333
No 228
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=91.78 E-value=1.3 Score=38.01 Aligned_cols=67 Identities=13% Similarity=0.054 Sum_probs=47.1
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHhh
Q 007695 514 RAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581 (592)
Q Consensus 514 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~l~~~ 581 (592)
..++.++|.++|+.+....... ...|-....--.+.|+.+.|.+++...+..+.+|...+..++-..
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~nl 138 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALRNL 138 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHHhh
Confidence 3478888888888776543333 555666666667888888888888888888777777666655443
No 229
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.61 E-value=7.8 Score=40.02 Aligned_cols=162 Identities=14% Similarity=0.050 Sum_probs=83.5
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCCC--HHH
Q 007695 366 LALLRSFAQCGDVRGAGQITNIMRIE--EFQPT---LESCTLLVEAYGQAGDPDQARSNFDYMIR----LGHKPD--DRC 434 (592)
Q Consensus 366 ~~Ll~~~~~~g~~~~A~~~~~~m~~~--g~~~~---~~~~~~Li~~~~~~g~~~~A~~lf~~m~~----~g~~pd--~~t 434 (592)
..|...|...|++.+|..++..+... +.... +..+...+..|...+++.+|..++.+... ....|+ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 45666777777777777777776532 21111 34556667777777888887777776543 111222 134
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHH----HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 007695 435 TASMIAAYGKKNLLDKALNLLLELEKD-GFEPGPATYT----VLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLC 509 (592)
Q Consensus 435 ~~~li~a~~~~g~~~~A~~l~~~m~~~-g~~p~~~ty~----~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li 509 (592)
|...+..+...+++.+|.+.|.+.... ...-+...+. .++.+..-.+....-..++........-++...+..++
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~ 300 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLV 300 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHH
Confidence 455666667777777777777666442 1112222111 11111111111111222222222222223566777788
Q ss_pred HHHHHc--CCHHHHHHHHHH
Q 007695 510 DMYARA--GIEKKALQALGF 527 (592)
Q Consensus 510 ~~~~~~--g~~~~A~~~~~~ 527 (592)
.+|... .++......|..
T Consensus 301 k~f~~~~L~~~~~~~~~~~~ 320 (445)
T 4b4t_P 301 KLFTTNELMRWPIVQKTYEP 320 (445)
T ss_dssp HHHHHCCSSSHHHHHHHTCS
T ss_pred HHHHhchHhhhHHHHHHHHH
Confidence 887654 345555555543
No 230
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=90.85 E-value=1.2 Score=42.87 Aligned_cols=94 Identities=18% Similarity=0.173 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-CCc
Q 007695 273 LEDAERILKKMNENGIVPD---IVTSTVLVHMYSK-----AGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNA-GQP 343 (592)
Q Consensus 273 ~~~A~~l~~~m~~~g~~pd---~~~~~~Li~~~~~-----~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~-g~~ 343 (592)
...|..++++..+. .|+ -..|..|...|.+ .|+.++|.+.|++.++.+-.-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 46778888888874 566 5578899999998 499999999999999863112478888899999885 999
Q ss_pred hHHHHHHHHHHHCCCC--CCHHHHHHH
Q 007695 344 KLGMSLVDMMITSGIE--RSEEIYLAL 368 (592)
Q Consensus 344 ~~A~~l~~~m~~~g~~--p~~~t~~~L 368 (592)
+.+.+.+++.+..... |+....+.+
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 9999999999987766 665544443
No 231
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=90.55 E-value=7.1 Score=32.92 Aligned_cols=139 Identities=15% Similarity=0.000 Sum_probs=76.8
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007695 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452 (592)
Q Consensus 373 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~ 452 (592)
.-.|..++..++..+.... .+..-||.+|.-....-+-+...++++..-.. .|. ...|++....
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHH
Confidence 4456666666666666653 25556666665555555555555555544331 222 1233333333
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 007695 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKK 532 (592)
Q Consensus 453 ~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~ 532 (592)
..+-.+ ..+...+...++.+...|+-++-.+++..+.. +..|++.....+..+|.+.|+..+|.+++.+.-++|
T Consensus 82 ~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 82 ECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 333222 12334555556666667777777777766543 344566667777777777777777777776666665
Q ss_pred C
Q 007695 533 E 533 (592)
Q Consensus 533 ~ 533 (592)
.
T Consensus 156 ~ 156 (172)
T 1wy6_A 156 E 156 (172)
T ss_dssp C
T ss_pred h
Confidence 4
No 232
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.25 E-value=1.9 Score=43.83 Aligned_cols=75 Identities=11% Similarity=0.083 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 007695 504 IQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEA-----QGFAASERLKVAL 578 (592)
Q Consensus 504 ~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~-----~g~~pd~~~~~~l 578 (592)
....++..+...|++.+|...+..+... .+.+...|..++.+|.+.|+..+|++.|+...+ .|+.|+..+..+.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 3445666777788888888777777665 455677788888888888888888888777653 3888887544443
Q ss_pred H
Q 007695 579 I 579 (592)
Q Consensus 579 ~ 579 (592)
.
T Consensus 252 ~ 252 (388)
T 2ff4_A 252 E 252 (388)
T ss_dssp H
T ss_pred H
Confidence 3
No 233
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=89.68 E-value=8.4 Score=32.47 Aligned_cols=62 Identities=16% Similarity=0.021 Sum_probs=28.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC
Q 007695 506 VSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGF 568 (592)
Q Consensus 506 ~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~g~ 568 (592)
..-++.....|+-++-.+++..+.. +.+|++...-.+..+|.+.|+..+|.+++++..+.|+
T Consensus 95 d~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 95 NKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 3334444445555555444444322 2344444444445555555555555555555554443
No 234
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=88.62 E-value=3 Score=35.85 Aligned_cols=105 Identities=8% Similarity=0.078 Sum_probs=64.2
Q ss_pred CCCHHHHHHHHHHHHHcCCc------hHHHHHHHHHHHCCCCCCHH----HHHHHHH---HHHhCCCHHHHHHHHHHHHH
Q 007695 324 QPDKKVYNSMIMAYVNAGQP------KLGMSLVDMMITSGIERSEE----IYLALLR---SFAQCGDVRGAGQITNIMRI 390 (592)
Q Consensus 324 ~pd~~t~~~li~a~~~~g~~------~~A~~l~~~m~~~g~~p~~~----t~~~Ll~---~~~~~g~~~~A~~~~~~m~~ 390 (592)
+.|..+|-..+...-+.|++ ++..++|++.... ++|+.. .|.-+-- .+...++.+.|.++|+.+..
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34666777777777777777 6677777776663 455421 1111100 01223677777777777765
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 007695 391 EEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430 (592)
Q Consensus 391 ~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~p 430 (592)
.. .--...|......-.+.|++..|.+++......+.+|
T Consensus 89 ~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 89 NC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred Hh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 53 2226666666666777888888888888777766654
No 235
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=88.31 E-value=2.7 Score=35.01 Aligned_cols=81 Identities=12% Similarity=0.127 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchH---HHHHHHHHHHCCCC-CCHHHHHHHHHHHHhCCCHHHHHHHH
Q 007695 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKL---GMSLVDMMITSGIE-RSEEIYLALLRSFAQCGDVRGAGQIT 385 (592)
Q Consensus 310 ~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~---A~~l~~~m~~~g~~-p~~~t~~~Ll~~~~~~g~~~~A~~~~ 385 (592)
.+.+.|......| .++..+-..+..++++..+... ++.+++++...+.+ -.....-.|.-++.+.|+++.|.+.+
T Consensus 19 ~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~ 97 (126)
T 1nzn_A 19 KFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 97 (126)
T ss_dssp HHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3444444433333 2445555555555555544433 44555554443200 12223333444455555555555555
Q ss_pred HHHHHc
Q 007695 386 NIMRIE 391 (592)
Q Consensus 386 ~~m~~~ 391 (592)
+.+.+.
T Consensus 98 ~~lL~~ 103 (126)
T 1nzn_A 98 RGLLQT 103 (126)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 555544
No 236
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=88.26 E-value=1.8 Score=47.81 Aligned_cols=125 Identities=13% Similarity=0.110 Sum_probs=77.1
Q ss_pred HHHHHHHHHcCC-HHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHHcCC-chHHHHHHHHHHHC------CCCC-CH--
Q 007695 296 TVLVHMYSKAGN-LDRAKEAFESLRSHGFQPDKKVY--NSMIMAYVNAGQ-PKLGMSLVDMMITS------GIER-SE-- 362 (592)
Q Consensus 296 ~~Li~~~~~~g~-~~~A~~~~~~m~~~g~~pd~~t~--~~li~a~~~~g~-~~~A~~l~~~m~~~------g~~p-~~-- 362 (592)
..|+..+...++ ++.|..+|+++.+. .|...++ ..++..+.+.++ --+|.+++.+.++. ...+ +.
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~--~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKK--DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhh--CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 345555555555 47788888888765 3433322 223333322222 22345555444321 1111 11
Q ss_pred --------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007695 363 --------EIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM 423 (592)
Q Consensus 363 --------~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m 423 (592)
.....-...|...|+++.|+++-++..... +.+-.+|..|..+|...|+++.|+-.++.+
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 122333455778899999999999888774 556889999999999999999999988876
No 237
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.21 E-value=20 Score=36.90 Aligned_cols=49 Identities=8% Similarity=0.127 Sum_probs=28.4
Q ss_pred CCchHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 007695 341 GQPKLGMSLVDMMIT-----SGIERSEEIYLALLRSFAQCGDVRGAGQITNIMR 389 (592)
Q Consensus 341 g~~~~A~~l~~~m~~-----~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~ 389 (592)
++++.|++.+..+.+ .+...+......++..|...++++...+.+..+.
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Ls 83 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLS 83 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 556666666555543 1233445566667777777777766655555444
No 238
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=87.32 E-value=2.5 Score=35.21 Aligned_cols=65 Identities=12% Similarity=-0.061 Sum_probs=29.3
Q ss_pred CHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHcCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 007695 501 PFKIQVSLCDMYARAGIEKK---ALQALGFLEAKKEQ-MGPDDFERIINGLLAGGFLQDAQRVHGLMEA 565 (592)
Q Consensus 501 ~~~~~~~Li~~~~~~g~~~~---A~~~~~~m~~~~~~-~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~ 565 (592)
+..+-..+..++.+..+... ++.+++.+...+.+ -..+..-.|.-++.+.|++++|.+.++.+++
T Consensus 34 s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 34 SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 44444444555555444433 44444444333100 0122233344455555555555555555554
No 239
>2xl1_A Arginine attenuator peptide; translation, antibiotic, ribosome, cytomegalovirus; NMR {Neurospora crassa}
Probab=85.14 E-value=0.31 Score=26.61 Aligned_cols=19 Identities=42% Similarity=0.721 Sum_probs=13.4
Q ss_pred ccCCCCCCcc-ccHHHHHHH
Q 007695 23 ESASASPSQD-FSEDLWRTV 41 (592)
Q Consensus 23 ~~~~~~~~~~-~~~~~~~~~ 41 (592)
|..+-..|+| |||.||+++
T Consensus 3 grpsvftsqdylsdhlwral 22 (26)
T 2xl1_A 3 GRPSVFTSQDYLSDHLWRAL 22 (26)
T ss_pred CCCceeecHHHHHHHHHHHH
Confidence 4444566666 799999975
No 240
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=84.45 E-value=5.8 Score=43.79 Aligned_cols=28 Identities=11% Similarity=-0.077 Sum_probs=17.9
Q ss_pred HHHHHHHHHhCCC-HHHHHHHHHHHHHcC
Q 007695 365 YLALLRSFAQCGD-VRGAGQITNIMRIEE 392 (592)
Q Consensus 365 ~~~Ll~~~~~~g~-~~~A~~~~~~m~~~g 392 (592)
...++..+...++ ++.|..+++.+....
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~ 279 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKD 279 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhC
Confidence 3455555555655 467777888777664
No 241
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=83.63 E-value=19 Score=40.69 Aligned_cols=273 Identities=11% Similarity=-0.010 Sum_probs=137.9
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCchHHHHHHHHHHHCCC--C-----CCHHHHHHHHHHH
Q 007695 302 YSKAGNLDRAKEAFESLRSHGFQPD--KKVYNSMIMAYVNAGQPKLGMSLVDMMITSGI--E-----RSEEIYLALLRSF 372 (592)
Q Consensus 302 ~~~~g~~~~A~~~~~~m~~~g~~pd--~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~--~-----p~~~t~~~Ll~~~ 372 (592)
....|+.++++.+++.....+-..+ +..=..+.-+....|..+++..++...+...- . +....-.++.-++
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 3445666666666655543110112 22333344455566666678877777655321 0 1111112222222
Q ss_pred HhCCC-HHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHhcCC
Q 007695 373 AQCGD-VRGAGQITNIMRIEEFQPTLESCT--LLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT--ASMIAAYGKKNL 447 (592)
Q Consensus 373 ~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~--~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~--~~li~a~~~~g~ 447 (592)
+-.|. -+++...+..+.... ........ +|...|.-.|+.+....++..+.... +.... ..+--++...|+
T Consensus 464 a~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTC
T ss_pred HhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCC
Confidence 22332 235555555555432 11111122 23334556677777788887776531 22222 223334456788
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 007695 448 LDKALNLLLELEKDGFEPGPATYT--VLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQAL 525 (592)
Q Consensus 448 ~~~A~~l~~~m~~~g~~p~~~ty~--~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~ 525 (592)
.+.+..+.+.+.... .|....-. ++.-+|+..|+.....+++..+.+... .++.-...+.-++...|+.+.+.+++
T Consensus 540 ~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~-d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 540 QELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSN-DDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp GGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred hHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCc-HHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 888888888876632 22222222 334466778888877778888876422 13333333444445567766677777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHCCCCCCH-HHHHHHHhhhhh
Q 007695 526 GFLEAKKEQMGPDDFERIINGLLAGGFL-QDAQRVHGLMEAQGFAASE-RLKVALISSQTF 584 (592)
Q Consensus 526 ~~m~~~~~~~~~~~~~~li~a~~~~g~~-~~A~~l~~~m~~~g~~pd~-~~~~~l~~~~~~ 584 (592)
+.+.+.+ .|....-..+.-+....|.. .+|+.++..+.. .+|. +-..++++....
T Consensus 618 ~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG~I 674 (963)
T 4ady_A 618 QLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALSMI 674 (963)
T ss_dssp TTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHHHH
T ss_pred HHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHHHH
Confidence 6665543 23333223333444444443 577778887753 3455 444444444333
No 242
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=82.95 E-value=10 Score=29.98 Aligned_cols=62 Identities=15% Similarity=0.046 Sum_probs=37.7
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007695 482 LINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERII 544 (592)
Q Consensus 482 ~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 544 (592)
+.-+..+-++.+....+.|++.+..+.+.+|.+.+++..|.++|+.+..+- .....+|..++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~l 86 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 86 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHH
Confidence 344555666666666666777777777777777777777777776666542 22233455444
No 243
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=82.75 E-value=69 Score=36.17 Aligned_cols=153 Identities=12% Similarity=0.183 Sum_probs=71.7
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHH-HH---HHHHHHHhCCC
Q 007695 302 YSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEI-YL---ALLRSFAQCGD 377 (592)
Q Consensus 302 ~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~---~Ll~~~~~~g~ 377 (592)
+...|+-+....++..+.+.. .-+..-+..+.-++...|+.+.+..+++.+.... ++.+ |. ++.-+|+..|+
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~---dp~vRygaa~alglAyaGTGn 575 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQELADDLITKMLASD---ESLLRYGGAFTIALAYAGTGN 575 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTSCC
T ss_pred hcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC---CHHHHHHHHHHHHHHhcCCCC
Confidence 344566666666666555431 1111122223333445677777777766666531 2222 22 23344566667
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHH
Q 007695 378 VRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLL-DKALNLLL 456 (592)
Q Consensus 378 ~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~-~~A~~l~~ 456 (592)
.....+++..+.... ..++.....+.-++...|+.+.+.++++.+.+.+ .|....-..+.-+....|.. .+++.++.
T Consensus 576 ~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~ 653 (963)
T 4ady_A 576 NSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLD 653 (963)
T ss_dssp HHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 666666776666432 2223323333333444566555666665554432 23333222333333333332 45566666
Q ss_pred HHHH
Q 007695 457 ELEK 460 (592)
Q Consensus 457 ~m~~ 460 (592)
.+..
T Consensus 654 ~L~~ 657 (963)
T 4ady_A 654 PLTK 657 (963)
T ss_dssp HHHT
T ss_pred HHcc
Confidence 6653
No 244
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=82.51 E-value=6.3 Score=39.86 Aligned_cols=68 Identities=18% Similarity=0.165 Sum_probs=40.5
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHH
Q 007695 366 LALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR-----LGHKPDDRC 434 (592)
Q Consensus 366 ~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~-----~g~~pd~~t 434 (592)
..++..+...|+++++...+..+.... +.+...|..+|.+|.+.|+..+|.+.|+.+.. .|+.|...+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 345555566666666666666665544 45566666666666666666666666665443 255555443
No 245
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=80.00 E-value=23 Score=41.40 Aligned_cols=168 Identities=10% Similarity=0.089 Sum_probs=83.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 007695 262 KLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAG 341 (592)
Q Consensus 262 ~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g 341 (592)
.++..+.+.+.++.|.++..... -+...--.+..+|...|++++|.+.|.+... |+..+.... .
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~----------~ 880 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQF----------A 880 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSC----------S
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhh----------h
Confidence 45555666677766666544332 2444444556677778888888888865421 111110000 0
Q ss_pred CchHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCCHHH
Q 007695 342 QPKLGMSLVDMMITSG--IERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT----LESCTLLVEAYGQAGDPDQ 415 (592)
Q Consensus 342 ~~~~A~~l~~~m~~~g--~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~Li~~~~~~g~~~~ 415 (592)
... -+..+.... ...-..=|..++..+.+.+.++.+.++-....+..-+.+ ...|..+.+.+...|++++
T Consensus 881 ~~~----~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~ 956 (1139)
T 4fhn_B 881 VLR----EFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDA 956 (1139)
T ss_dssp SHH----HHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGG
T ss_pred hhc----ccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHH
Confidence 000 000111100 011223355556666666666666655555444321111 1246666667777777777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007695 416 ARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKA 451 (592)
Q Consensus 416 A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A 451 (592)
|...+-.+..... -...+..+|...|..|..+.-
T Consensus 957 Ay~aL~~~pd~~~--r~~cLr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 957 AHVALMVLSTTPL--KKSCLLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp GGHHHHHHHHSSS--CHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHhCCCHHH--HHHHHHHHHHHHHhCCChhhh
Confidence 7666666655332 244555666666665554443
No 246
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=79.00 E-value=74 Score=34.16 Aligned_cols=287 Identities=9% Similarity=0.020 Sum_probs=134.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 007695 261 SKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNA 340 (592)
Q Consensus 261 ~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~ 340 (592)
+.-+..+++.+++......+.. .+.+...-.....+....|+-.+|......+-..| .......+.++..+.+.
T Consensus 76 ~~~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~ 149 (618)
T 1qsa_A 76 SRFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRAS 149 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHC
Confidence 4445566667777666654432 23355555566667777777766766666655444 33344566677766666
Q ss_pred CCchH--HHHHHHHHHHCC-----------CCCCHHHH-HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH---HHHHH
Q 007695 341 GQPKL--GMSLVDMMITSG-----------IERSEEIY-LALLRSFAQCGDVRGAGQITNIMRIEEFQPTLE---SCTLL 403 (592)
Q Consensus 341 g~~~~--A~~l~~~m~~~g-----------~~p~~~t~-~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~---~~~~L 403 (592)
|.... ...=++.+...| +.++.... ..++..+.+-.. +.... .. +.++.. .+..-
T Consensus 150 g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~---~~~~~---~~--~~~~~~~~~~~~~~ 221 (618)
T 1qsa_A 150 GKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNT---VLTFA---RT--TGATDFTRQMAAVA 221 (618)
T ss_dssp TCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGG---HHHHH---HH--SCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHh---HHHHH---hc--cCCChhhHHHHHHH
Confidence 65433 222223333332 11111110 111111111001 11000 00 112211 11112
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 007695 404 VEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTA----SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479 (592)
Q Consensus 404 i~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~----~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~ 479 (592)
+.-+.+ .+.+.|...|........ .+..... .+.......+...++...+....... ++.....-.+....+
T Consensus 222 ~~rlar-~d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr 297 (618)
T 1qsa_A 222 FASVAR-QDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALG 297 (618)
T ss_dssp HHHHHH-HCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHH
T ss_pred HHHHHh-cCHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHH
Confidence 222223 366777777777654322 2222222 22222233342344444555443322 333333334444456
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------cCCC-------CCH---
Q 007695 480 LQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEA------------KKEQ-------MGP--- 537 (592)
Q Consensus 480 ~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~------------~~~~-------~~~--- 537 (592)
.|+++.|...|..|...... ...-.--+..++...|+.++|..+|+.+.. .|.. ++.
T Consensus 298 ~~d~~~a~~~~~~l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~~~~~ 376 (618)
T 1qsa_A 298 TGDRRGLNTWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVD 376 (618)
T ss_dssp HTCHHHHHHHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCC
T ss_pred CCCHHHHHHHHHHccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCCCChhHH
Confidence 67777777777776543221 233334455566677777777777665432 1111 100
Q ss_pred H-----HHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 007695 538 D-----DFERIINGLLAGGFLQDAQRVHGLMEAQ 566 (592)
Q Consensus 538 ~-----~~~~li~a~~~~g~~~~A~~l~~~m~~~ 566 (592)
. .-...+..+...|....|...+..+...
T Consensus 377 ~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~ 410 (618)
T 1qsa_A 377 SALTQGPEMARVRELMYWNLDNTARSEWANLVKS 410 (618)
T ss_dssp CHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc
Confidence 0 1122355677889988888888777653
No 247
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=78.18 E-value=18 Score=42.16 Aligned_cols=86 Identities=17% Similarity=0.008 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 007695 468 ATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPF----KIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERI 543 (592)
Q Consensus 468 ~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 543 (592)
.-|..++..+.+.+.++.+.++-+..++....-+. ..|..+..++...|++++|...+-.+..... -......|
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~L 977 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDF 977 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHH
Confidence 44667777778888888888777766544222121 2577778888888888888888777765432 34566677
Q ss_pred HHHHHhCCCHHH
Q 007695 544 INGLLAGGFLQD 555 (592)
Q Consensus 544 i~a~~~~g~~~~ 555 (592)
+..++..|..+.
T Consensus 978 V~~lce~~~~~~ 989 (1139)
T 4fhn_B 978 VNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHCCHHH
T ss_pred HHHHHhCCChhh
Confidence 776666655443
No 248
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=77.89 E-value=0.0037 Score=64.35 Aligned_cols=262 Identities=12% Similarity=0.046 Sum_probs=161.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007695 259 DYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYV 338 (592)
Q Consensus 259 ~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~ 338 (592)
+|+.|..++.+.+++.+|.+-|= +. -|+..|..+|....+.|.+++-...+...++.. .++..=+.|+-+|+
T Consensus 56 VWs~LgkAqL~~~~v~eAIdsyI--kA----~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayA 127 (624)
T 3lvg_A 56 VWSQLAKAQLQKGMVKEAIDSYI--KA----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALA 127 (624)
T ss_dssp CSSSHHHHTTTSSSCTTTTTSSC--CC----SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHH
T ss_pred HHHHHHHHHHccCchHHHHHHHH--hC----CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHH
Confidence 56777777777777777765542 11 256667778888888888887777776665542 23334457777787
Q ss_pred HcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007695 339 NAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARS 418 (592)
Q Consensus 339 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~ 418 (592)
+.++..+..+++ -.||..-...+..-|...|.++.|.-+|..+.. |..|..++.+.|++..|.+
T Consensus 128 k~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~AVd 191 (624)
T 3lvg_A 128 KTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVD 191 (624)
T ss_dssp TSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGSSTT
T ss_pred hhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHHHHH
Confidence 777766544332 234555556666777777777777666654432 2233344455555555543
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 007695 419 NFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498 (592)
Q Consensus 419 lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~ 498 (592)
.-++ .-+..||-.+-.+|...+.+.-|.-.--.+.-. | .....++..|.+.|.+++...+++..... .
T Consensus 192 aArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh---a--deL~elv~~YE~~G~f~ELIsLlEaglgl-E 259 (624)
T 3lvg_A 192 GARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---A--DELEELINYYQDRGYFEELITMLEAALGL-E 259 (624)
T ss_dssp TTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---S--SCCSGGGSSSSTTCCCTTSTTTHHHHTTS-T
T ss_pred HHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhccc---H--HHHHHHHHHHHhCCCHHHHHHHHHHHhCC-C
Confidence 2221 236678888888888888877765554444322 1 12334566678888888888888877643 3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-------HHHHHHHHHHHHhCCCHHHHH
Q 007695 499 APPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG-------PDDFERIINGLLAGGFLQDAQ 557 (592)
Q Consensus 499 ~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~-------~~~~~~li~a~~~~g~~~~A~ 557 (592)
.....+++-|.-.|++- +.++..+.++..-.+=..|. ...|.-++-.|.+-..++.|.
T Consensus 260 rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 260 RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 45888999999999886 45555555544332211121 123666777777777777664
No 249
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=76.99 E-value=18 Score=30.32 Aligned_cols=63 Identities=14% Similarity=0.052 Sum_probs=45.2
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 007695 482 LINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIIN 545 (592)
Q Consensus 482 ~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 545 (592)
+.-+..+-++.+....+.|++.+..+.+.+|.+.+++..|.++|+-++.+ ..+....|..++.
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 44556666777777777888888888888888888888888888877766 3333445665554
No 250
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=75.39 E-value=12 Score=29.63 Aligned_cols=48 Identities=15% Similarity=0.095 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 007695 344 KLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE 391 (592)
Q Consensus 344 ~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~ 391 (592)
-+..+-+..+...++.|++.+..+.+++|.+.+++..|.++|+.++.+
T Consensus 27 ~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 27 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 345555555555556666666666666666666666666666665544
No 251
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=70.65 E-value=26 Score=29.25 Aligned_cols=66 Identities=12% Similarity=-0.118 Sum_probs=27.9
Q ss_pred CCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007695 465 PGPATYTVLVDWLGRLQLI---NEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEA 530 (592)
Q Consensus 465 p~~~ty~~li~~~~~~g~~---~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~ 530 (592)
|+..|--.+..++.+.... ..+..++..+.+.+..-....+-.|.-++.+.|+++.|.+..+.+.+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4444433444444444332 23444444444433211223333444445555555555555554444
No 252
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=70.11 E-value=49 Score=27.95 Aligned_cols=71 Identities=14% Similarity=0.047 Sum_probs=46.5
Q ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 007695 254 QTNVRDYSKLIDAHAKENC---LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPD 326 (592)
Q Consensus 254 ~p~~~~y~~Li~~~~~~g~---~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd 326 (592)
.|+..+--....++.+..+ ..+++.+++.+.+.+..-.....-.|.-++.+.|++++|++..+.+++. .|+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCC
Confidence 5666665555556666554 4567778887776543323444455667788888888888888888875 454
No 253
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=69.14 E-value=36 Score=28.38 Aligned_cols=68 Identities=15% Similarity=0.035 Sum_probs=42.9
Q ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 007695 254 QTNVRDYSKLIDAHAKENC---LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSH 321 (592)
Q Consensus 254 ~p~~~~y~~Li~~~~~~g~---~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~ 321 (592)
.|++.+--....++.+..+ ..+++.+++.+.+.+..-....+-.|.-++.+.|+++.|++..+.+++.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 4555554444455555543 4567777777776542223445556667778888888888888887765
No 254
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=64.33 E-value=1.2e+02 Score=30.36 Aligned_cols=25 Identities=8% Similarity=0.029 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Q 007695 259 DYSKLIDAHAKENCLEDAERILKKM 283 (592)
Q Consensus 259 ~y~~Li~~~~~~g~~~~A~~l~~~m 283 (592)
....|...|.+.|+.++..+++...
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~ 45 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVT 45 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3455666666666666666666554
No 255
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=64.15 E-value=25 Score=29.40 Aligned_cols=46 Identities=15% Similarity=0.144 Sum_probs=24.7
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 007695 346 GMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE 391 (592)
Q Consensus 346 A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~ 391 (592)
..+-++.+...++.|++.+..+.+++|.+.+++..|.++|+-++.+
T Consensus 72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K 117 (152)
T 2y69_E 72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 117 (152)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 3344444444455555555555555555555555555555555443
No 256
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=63.13 E-value=69 Score=27.06 Aligned_cols=23 Identities=17% Similarity=0.043 Sum_probs=11.4
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHH
Q 007695 543 IINGLLAGGFLQDAQRVHGLMEA 565 (592)
Q Consensus 543 li~a~~~~g~~~~A~~l~~~m~~ 565 (592)
|.-++.+.|++++|.++.+.+++
T Consensus 83 LAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 83 LTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh
Confidence 44445555555555555555444
No 257
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=62.54 E-value=1.3e+02 Score=30.12 Aligned_cols=27 Identities=15% Similarity=0.206 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 007695 363 EIYLALLRSFAQCGDVRGAGQITNIMR 389 (592)
Q Consensus 363 ~t~~~Ll~~~~~~g~~~~A~~~~~~m~ 389 (592)
.....|...|.+.|+.++...++....
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~ 46 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTR 46 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344555666666666666666655543
No 258
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=60.94 E-value=43 Score=29.14 Aligned_cols=114 Identities=10% Similarity=-0.104 Sum_probs=55.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC-CCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCCHHHHHH
Q 007695 438 MIAAYGKKNLLDKALNLLLELEKD-GFEPGP-------ATYTVLVDWLGRLQLINEAEQLLGKISEL--GEAPPFKIQVS 507 (592)
Q Consensus 438 li~a~~~~g~~~~A~~l~~~m~~~-g~~p~~-------~ty~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~~~~~ 507 (592)
-+..+...|.++.|+-+.+.+... +..|+. .++..+.+++...+++..|...|++.... .+.-+..+...
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~ 105 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPS 105 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 355566667777776666554432 122331 24455566666777777777777665321 11101111111
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 007695 508 LCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLME 564 (592)
Q Consensus 508 Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~ 564 (592)
+. ....... ......+.+.-..+..+|.+.+++++|+.+++.+.
T Consensus 106 ~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 106 TG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp ------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred cc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 10 0000000 00011122333447788999999999999987653
No 259
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=60.25 E-value=24 Score=33.37 Aligned_cols=54 Identities=13% Similarity=0.058 Sum_probs=34.2
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007695 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR 425 (592)
Q Consensus 371 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~ 425 (592)
...+.|++++++.....-.+.. +.|...-..|+..+|-.|++++|..-++...+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3445666666666666655554 55666666666666667777766666666655
No 260
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=59.02 E-value=88 Score=31.73 Aligned_cols=59 Identities=12% Similarity=0.041 Sum_probs=27.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 007695 295 STVLVHMYSKAGNLDRAKEAFESLRSH--GFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMM 353 (592)
Q Consensus 295 ~~~Li~~~~~~g~~~~A~~~~~~m~~~--g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m 353 (592)
+..+...|.+.|+++.|.+.|.++... +...-...+-..++.+...+++..+...+.+.
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 344555555555555555555555432 11122334444444444444444444444443
No 261
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=58.47 E-value=1e+02 Score=31.20 Aligned_cols=97 Identities=11% Similarity=0.025 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHH--
Q 007695 364 IYLALLRSFAQCGDVRGAGQITNIMRIEEFQ--PTLESCTLLVEAYGQAGDPDQARSNFDYMIRL-GHKPDDRCTASM-- 438 (592)
Q Consensus 364 t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~--~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~-g~~pd~~t~~~l-- 438 (592)
++..+...|.+.|+++.|.++|.++...-.. --...+-.++..+...+++..+...+.+.... .-.+|....+.+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 5566777777777777777777777654222 22456666677777777777777777766542 111222222111
Q ss_pred --HHHHHhcCCHHHHHHHHHHHHH
Q 007695 439 --IAAYGKKNLLDKALNLLLELEK 460 (592)
Q Consensus 439 --i~a~~~~g~~~~A~~l~~~m~~ 460 (592)
.-.+...+++..|...|.+...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 1122344666666666655543
No 262
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=58.28 E-value=93 Score=27.00 Aligned_cols=122 Identities=10% Similarity=0.039 Sum_probs=74.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC-CHHH
Q 007695 400 CTLLVEAYGQAGDPDQARSNFDYMIRL-GHKPDD-------RCTASMIAAYGKKNLLDKALNLLLELEKD-GFEP-GPAT 469 (592)
Q Consensus 400 ~~~Li~~~~~~g~~~~A~~lf~~m~~~-g~~pd~-------~t~~~li~a~~~~g~~~~A~~l~~~m~~~-g~~p-~~~t 469 (592)
+-.-+..+...|.++.|+-+.+.+... +..|+. .++..+.+++...+++..|...|++..+. ..-+ +..+
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 344577888999999999988876653 223442 35566778899999999999999996543 1111 1111
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 007695 470 YTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQ 534 (592)
Q Consensus 470 y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~ 534 (592)
+.++- ....... .....++...---+..+|.+.+++++|+.+++.+..+...
T Consensus 103 ~~~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt 154 (167)
T 3ffl_A 103 RPSTG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRT 154 (167)
T ss_dssp ---------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCC
T ss_pred ccccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcC
Confidence 11110 0000000 0112234555556888999999999999999887665443
No 263
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=54.82 E-value=26 Score=33.10 Aligned_cols=54 Identities=20% Similarity=0.109 Sum_probs=33.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007695 406 AYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEK 460 (592)
Q Consensus 406 ~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~ 460 (592)
...+.|++++|+.....-.+..+. |...-..++..+|-.|+++.|.+-++...+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 345566777777666666554432 555555666677777777777766666554
No 264
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=53.38 E-value=1.3e+02 Score=27.06 Aligned_cols=79 Identities=18% Similarity=0.124 Sum_probs=52.5
Q ss_pred hhhCCCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 007695 248 LSEESFQTNVRDYSKLIDAHAK--ENCLEDAERILKKMNENGIVPD-IVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQ 324 (592)
Q Consensus 248 ~~~~~~~p~~~~y~~Li~~~~~--~g~~~~A~~l~~~m~~~g~~pd-~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~ 324 (592)
.....++-|+.-...-|...-- .++...+..+|..|..+|+--. +..|......+-..|++.+|..+|+.-.+.+..
T Consensus 68 ~~~~rYkND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~ 147 (202)
T 3esl_A 68 QDMETYRNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCR 147 (202)
T ss_dssp TTCGGGTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred cccccccCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 3344455666543333332222 4447788888888888776543 556777888888888888888888888877666
Q ss_pred CC
Q 007695 325 PD 326 (592)
Q Consensus 325 pd 326 (592)
|-
T Consensus 148 P~ 149 (202)
T 3esl_A 148 PY 149 (202)
T ss_dssp SH
T ss_pred cH
Confidence 64
No 265
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=51.10 E-value=7 Score=36.64 Aligned_cols=45 Identities=13% Similarity=0.157 Sum_probs=21.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHHcCCHH
Q 007695 261 SKLIDAHAKENCLEDAERILKKMNENGIVPDIV---TSTVLVHMYSKAGNLD 309 (592)
Q Consensus 261 ~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~---~~~~Li~~~~~~g~~~ 309 (592)
+..+...++.|+++....++ +.|..++.. .-.+.+...+..|+.+
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~~g~t~L~~A~~~g~~~ 53 (285)
T 1wdy_A 6 NHLLIKAVQNEDVDLVQQLL----EGGANVNFQEEEGGWTPLHNAVQMSRED 53 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTTCCCHHHHHHHTTCHH
T ss_pred chHHHHHHHcCCHHHHHHHH----HcCCCcccccCCCCCcHHHHHHHcCCHH
Confidence 34455566667765444433 444443321 1123444555566654
No 266
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=48.53 E-value=1.4e+02 Score=26.15 Aligned_cols=17 Identities=18% Similarity=0.165 Sum_probs=6.6
Q ss_pred CHHHHHHHHHHHHhCCC
Q 007695 361 SEEIYLALLRSFAQCGD 377 (592)
Q Consensus 361 ~~~t~~~Ll~~~~~~g~ 377 (592)
+..+-...+.++.+.++
T Consensus 94 ~~~vr~~a~~aL~~~~~ 110 (211)
T 3ltm_A 94 DGWVRQSAAVALGQIGD 110 (211)
T ss_dssp SHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 33333333444443333
No 267
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=48.09 E-value=1e+02 Score=24.38 Aligned_cols=82 Identities=15% Similarity=0.141 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHhhhCCCCCCHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007695 237 TQLYFKVAELVLSEESFQTNVRDYSKLI--DAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEA 314 (592)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~p~~~~y~~Li--~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~ 314 (592)
.+++..++++.... ++ .-...+| ..+..+|+|++|..+.+.+. .||...|-+|.. .+.|..+++...
T Consensus 23 HqEA~tIAdwL~~~----~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~r 91 (116)
T 2p58_C 23 HEEANCIAEWLHLK----GE-EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESR 91 (116)
T ss_dssp HHHHHHHHHHHHHT----TC-HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhC----Cc-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHH
Confidence 45566666665432 22 2222333 34566777777777665543 567777755543 466777777776
Q ss_pred HHHHHhCCCCCCHHHH
Q 007695 315 FESLRSHGFQPDKKVY 330 (592)
Q Consensus 315 ~~~m~~~g~~pd~~t~ 330 (592)
+..+...| .|....|
T Consensus 92 L~~la~sg-~p~~q~F 106 (116)
T 2p58_C 92 LNRLARSQ-DPRIQTF 106 (116)
T ss_dssp HHHHTTCC-CHHHHHH
T ss_pred HHHHHhCC-CHHHHHH
Confidence 66666655 4443333
No 268
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=47.79 E-value=97 Score=24.42 Aligned_cols=82 Identities=13% Similarity=0.108 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhhhCCCCCCHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007695 237 TQLYFKVAELVLSEESFQTNVRDYSKLI--DAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEA 314 (592)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~p~~~~y~~Li--~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~ 314 (592)
.+++..++++.... ++ .-...+| ..+..+|+|++|..+.+.+. .||...|-+|.. .+.|..+++...
T Consensus 22 HqEA~tIAdwL~~~----~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~r 90 (115)
T 2uwj_G 22 HEEALCIAEWLERL----GQ-DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRR 90 (115)
T ss_dssp HHHHHHHHHHHHHT----TC-HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhC----Cc-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHH
Confidence 45566666665432 22 2222333 34566777777777665443 467777655533 466777777777
Q ss_pred HHHHHhCCCCCCHHHH
Q 007695 315 FESLRSHGFQPDKKVY 330 (592)
Q Consensus 315 ~~~m~~~g~~pd~~t~ 330 (592)
+..+..+| .|....|
T Consensus 91 L~~la~sg-~p~~q~F 105 (115)
T 2uwj_G 91 LAGLGGSS-DPALADF 105 (115)
T ss_dssp HHHHHTCS-SHHHHHH
T ss_pred HHHHHhCC-CHHHHHH
Confidence 76666655 4443333
No 269
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=46.93 E-value=1.6e+02 Score=26.38 Aligned_cols=56 Identities=11% Similarity=-0.015 Sum_probs=40.0
Q ss_pred cCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 007695 480 LQLINEAEQLLGKISELGEAP-PFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQM 535 (592)
Q Consensus 480 ~g~~~~A~~l~~~m~~~g~~p-~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~ 535 (592)
.+...+...+|..|...|+.. -...|......+...|++.+|..+|+.-.+.+-.|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 334667778888877766542 45667777777788888888888888777776666
No 270
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=43.32 E-value=2.4e+02 Score=27.44 Aligned_cols=167 Identities=11% Similarity=0.068 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HHHHHhCCCCCCHHHHHHHH
Q 007695 259 DYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEA----FESLRSHGFQPDKKVYNSMI 334 (592)
Q Consensus 259 ~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~----~~~m~~~g~~pd~~t~~~li 334 (592)
+|.++..-|.+.+++++|.+++..-. ..+.+.|+...|-++ .+-+.+.++++|......++
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 45566666777888888877664421 122344444443333 23444556666666666666
Q ss_pred HHHHHcCCch-HHHHHHHHHHH----CC--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007695 335 MAYVNAGQPK-LGMSLVDMMIT----SG--IERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAY 407 (592)
Q Consensus 335 ~a~~~~g~~~-~A~~l~~~m~~----~g--~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~ 407 (592)
..+.....-+ .=..++++++. .| ..-|+.....+...|.+.+++.+|...|- .|-.+....|..++.-+
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew 177 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEW 177 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHH
Confidence 6655443211 11223333322 12 33467777888888888888888877762 23233335665555444
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007695 408 GQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELE 459 (592)
Q Consensus 408 ~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~ 459 (592)
.+.+...+ +|.. ....+--|...++...|..+++...
T Consensus 178 ~~~~~~~e--------------~dlf-iaRaVL~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 178 YKQDESHT--------------APLY-CARAVLPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHTSCGGG--------------HHHH-HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhcCCcc--------------HHHH-HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 44332111 1111 2223335566777888877666554
No 271
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=42.98 E-value=1.2e+02 Score=23.90 Aligned_cols=76 Identities=17% Similarity=0.160 Sum_probs=45.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHH--HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHH
Q 007695 272 CLEDAERILKKMNENGIVPDIVTSTVLV--HMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSL 349 (592)
Q Consensus 272 ~~~~A~~l~~~m~~~g~~pd~~~~~~Li--~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l 349 (592)
..++|..+-+.+...+ + .-..+|| ..+...|++++|..+.+.+. .||...|-+|-.. +.|..+++...
T Consensus 22 ~HqEA~tIAdwL~~~~---~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rlGl~s~le~r 91 (116)
T 2p58_C 22 YHEEANCIAEWLHLKG---E-EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCEY--RLGLGSALESR 91 (116)
T ss_dssp CHHHHHHHHHHHHHTT---C-HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHHH--HHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC---c-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hcccHHHHHHH
Confidence 4566666666665543 2 2222333 34456778888877776655 6777777666543 56666777666
Q ss_pred HHHHHHCC
Q 007695 350 VDMMITSG 357 (592)
Q Consensus 350 ~~~m~~~g 357 (592)
+..+...|
T Consensus 92 L~~la~sg 99 (116)
T 2p58_C 92 LNRLARSQ 99 (116)
T ss_dssp HHHHTTCC
T ss_pred HHHHHhCC
Confidence 66666554
No 272
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=42.12 E-value=1.2e+02 Score=23.98 Aligned_cols=76 Identities=14% Similarity=0.077 Sum_probs=43.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHH--HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHH
Q 007695 272 CLEDAERILKKMNENGIVPDIVTSTVLV--HMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSL 349 (592)
Q Consensus 272 ~~~~A~~l~~~m~~~g~~pd~~~~~~Li--~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l 349 (592)
..++|..+-+.+...+ + .-..+|| ..+...|++++|..+.+.+. .||...|-+|-.. +.|..+++...
T Consensus 21 ~HqEA~tIAdwL~~~~---~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rlGl~s~le~r 90 (115)
T 2uwj_G 21 CHEEALCIAEWLERLG---Q-DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCEW--HLGLGAALDRR 90 (115)
T ss_dssp CHHHHHHHHHHHHHTT---C-HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHHH--HTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC---c-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hcccHHHHHHH
Confidence 3455655555555542 2 2222333 23456677777776665554 6777776665443 56666666666
Q ss_pred HHHHHHCC
Q 007695 350 VDMMITSG 357 (592)
Q Consensus 350 ~~~m~~~g 357 (592)
+..+..+|
T Consensus 91 L~~la~sg 98 (115)
T 2uwj_G 91 LAGLGGSS 98 (115)
T ss_dssp HHHHHTCS
T ss_pred HHHHHhCC
Confidence 66666555
No 273
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=41.78 E-value=1.4e+02 Score=29.50 Aligned_cols=67 Identities=15% Similarity=0.134 Sum_probs=38.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCH
Q 007695 400 CTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNL--LDKALNLLLELEKDGFEPGP 467 (592)
Q Consensus 400 ~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~--~~~A~~l~~~m~~~g~~p~~ 467 (592)
.+.++.-|...|+.++|...++++..-... .......+..+.-+.++ .+....++..+...|+-+..
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~ 288 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 288 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHH
Confidence 466777777778888888777777531111 12334444444444333 34566677766666654443
No 274
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=41.61 E-value=1.6e+02 Score=28.97 Aligned_cols=26 Identities=12% Similarity=0.226 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHH
Q 007695 329 VYNSMIMAYVNAGQPKLGMSLVDMMI 354 (592)
Q Consensus 329 t~~~li~a~~~~g~~~~A~~l~~~m~ 354 (592)
....+|.-|...++.++|...++++.
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~ 81 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDLN 81 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhC
Confidence 45678888888899998888888864
No 275
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=41.15 E-value=2.5e+02 Score=27.00 Aligned_cols=110 Identities=12% Similarity=0.043 Sum_probs=52.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHH----HHHHHHHCCCCCCHHHHHHHHHHH
Q 007695 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMS----LVDMMITSGIERSEEIYLALLRSF 372 (592)
Q Consensus 297 ~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~----l~~~m~~~g~~p~~~t~~~Ll~~~ 372 (592)
++..=|.+.+++++|.+++..-.. .+.+.|+...|-+ +++...+.+++++......++..+
T Consensus 38 tl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 38 TIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 444555666666666666543221 1222333333222 334444455666666655555555
Q ss_pred HhCCCHH-HHHHHHHHH----HHcC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007695 373 AQCGDVR-GAGQITNIM----RIEE--FQPTLESCTLLVEAYGQAGDPDQARSNFD 421 (592)
Q Consensus 373 ~~~g~~~-~A~~~~~~m----~~~g--~~~~~~~~~~Li~~~~~~g~~~~A~~lf~ 421 (592)
.....-+ .=.++++.+ .+.| -.-+......+...|.+.|++.+|...|-
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 4422111 011222222 2222 12356667777777777777777766654
No 276
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=40.14 E-value=2.6e+02 Score=26.89 Aligned_cols=167 Identities=7% Similarity=-0.048 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHHHHHhCCCCCCHHHHHHHH
Q 007695 259 DYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE----AFESLRSHGFQPDKKVYNSMI 334 (592)
Q Consensus 259 ~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~----~~~~m~~~g~~pd~~t~~~li 334 (592)
.|.++..-|.+.+++++|.+++..-. ..+.+.|+...|-+ +.+-+.+.+++++......++
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGA---------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 45666667777788888877765422 12334455544444 344455667777777777777
Q ss_pred HHHHHcCCch-HHHHHHHHHHH----CC--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007695 335 MAYVNAGQPK-LGMSLVDMMIT----SG--IERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAY 407 (592)
Q Consensus 335 ~a~~~~g~~~-~A~~l~~~m~~----~g--~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~ 407 (592)
..+.....-+ .-.++++.++. .| ..-++..+..+...|.+.+++.+|...|-. |-.-+...+..++.-+
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~~w 175 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYVDLLWDW 175 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHHHHHHHH
Confidence 6665533211 12344444432 22 234788899999999999999998877641 1011344555544444
Q ss_pred HHc---CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007695 408 GQA---GDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELE 459 (592)
Q Consensus 408 ~~~---g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~ 459 (592)
.+. |...++- .. ....+--|...|+...|..+|+...
T Consensus 176 ~~~~~~~~~~e~d--------------lf-~~RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 176 LCQVDDIEDSTVA--------------EF-FSRLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHTTCCCHHHHH--------------HH-HHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred HHhcCCCCcchHH--------------HH-HHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 443 4333321 11 1122334566788888888877654
No 277
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=39.14 E-value=32 Score=31.87 Aligned_cols=26 Identities=8% Similarity=0.035 Sum_probs=13.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 007695 262 KLIDAHAKENCLEDAERILKKMNENGIVPD 291 (592)
Q Consensus 262 ~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd 291 (592)
+.+...+..|+.+-+ +.+.+.|..++
T Consensus 41 t~L~~A~~~g~~~~v----~~Ll~~g~~~~ 66 (285)
T 1wdy_A 41 TPLHNAVQMSREDIV----ELLLRHGADPV 66 (285)
T ss_dssp CHHHHHHHTTCHHHH----HHHHHTTCCTT
T ss_pred cHHHHHHHcCCHHHH----HHHHHcCCCCc
Confidence 345555666665433 33444555443
No 278
>1ej5_A WAsp, wiskott-aldrich syndrome protein; alpha helix, beta-hairpin turn, blood clotting; NMR {Homo sapiens} SCOP: a.68.1.1 PDB: 1t84_A* 2k42_A
Probab=37.75 E-value=17 Score=29.06 Aligned_cols=57 Identities=16% Similarity=0.368 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCchH----HH-HHhhhh------hhccchhhhhHHHh
Q 007695 35 EDLWRTVWEVSNLVLEDMEKARKKEKMKGFLQSDK----VK-EMSRFA------GEIGIRGDMLRELR 91 (592)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~------~~~~~~~~~~~~~~ 91 (592)
+.-|+.++.-+..-.+++++..-+..+.+||+..- |+ |+++-+ |..||.|++.+.|.
T Consensus 23 ppeWk~LL~~aGITe~elkdn~t~~fI~dfie~~~gle~v~~e~~~~~~~~~~~~~~~~~~al~~~~~ 90 (107)
T 1ej5_A 23 DPDLRSLFSRAGISEAQLTDAETSKLIYDFIEDQGGLEAVRQEMRRQGGSGGSQSSEGLVGALMHVMQ 90 (107)
T ss_dssp CHHHHHHHHHTTCCHHHHSCHHHHHHHHHHHHHTTHHHHHHHHHHHTTTSSSSCTTTTHHHHHHHHGG
T ss_pred CHHHHHHHHHcCCCHHHHHcCHHHHHHHHHHHHccccchhhHhhhhccCCCCCCccchHHHHHHHHHH
Confidence 56799999977777777777777788888887644 33 444443 36689999876653
No 279
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=37.02 E-value=2.5e+02 Score=25.74 Aligned_cols=89 Identities=13% Similarity=0.080 Sum_probs=47.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC--CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007695 263 LIDAHAKENCLEDAERILKKMNEN--GIVP----DIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336 (592)
Q Consensus 263 Li~~~~~~g~~~~A~~l~~~m~~~--g~~p----d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a 336 (592)
-++.+....++++|..++++..+. ++++ +.......+..-.....-.-+..+.+.+.. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 466788888899998888876542 2221 011112223333332333333344444422 3455556666677
Q ss_pred HHHcCCchHHHHHHHHHH
Q 007695 337 YVNAGQPKLGMSLVDMMI 354 (592)
Q Consensus 337 ~~~~g~~~~A~~l~~~m~ 354 (592)
+.+.|+.++|.++|-+..
T Consensus 101 L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHH
Confidence 777777777777765543
No 280
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=35.93 E-value=3.2e+02 Score=26.63 Aligned_cols=166 Identities=11% Similarity=0.079 Sum_probs=84.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HHHHHHcCCCCCHHHHHHHHH
Q 007695 365 YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSN----FDYMIRLGHKPDDRCTASMIA 440 (592)
Q Consensus 365 ~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~l----f~~m~~~g~~pd~~t~~~li~ 440 (592)
|.++..=|.+.+++++|.+++..-- ..+.+.|+...|-++ .+-..+.++++|......++.
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~ 102 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLG 102 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3444455666777777776654322 223334444333332 233344456666666665655
Q ss_pred HHHhcCCHH-HHHHHHHHHHH----CC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 007695 441 AYGKKNLLD-KALNLLLELEK----DG--FEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYA 513 (592)
Q Consensus 441 a~~~~g~~~-~A~~l~~~m~~----~g--~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~ 513 (592)
.+.....-+ .=..+.+.+.+ .| -.-++.....+...|.+.+++.+|..-|- .|-.+++..+..++.-+.
T Consensus 103 L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~ 178 (336)
T 3lpz_A 103 CLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWY 178 (336)
T ss_dssp HHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHH
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHH
Confidence 555443211 11222332221 11 23456666677777888888887776652 233333455544444433
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhCCCHHHHHHHHHHHHH
Q 007695 514 RAGIEKKALQALGFLEAKKEQMGPDDF-ERIINGLLAGGFLQDAQRVHGLMEA 565 (592)
Q Consensus 514 ~~g~~~~A~~~~~~m~~~~~~~~~~~~-~~li~a~~~~g~~~~A~~l~~~m~~ 565 (592)
..+.. -....| ...+--|...++...|..+++...+
T Consensus 179 ~~~~~----------------~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 179 KQDES----------------HTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HTSCG----------------GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhcCC----------------ccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33321 112222 3345566777888888887766553
No 281
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=35.68 E-value=26 Score=31.66 Aligned_cols=46 Identities=13% Similarity=0.161 Sum_probs=23.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHHcCCHH
Q 007695 264 IDAHAKENCLEDAERILKKMNENGIVPDIVT--STVLVHMYSKAGNLD 309 (592)
Q Consensus 264 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~--~~~Li~~~~~~g~~~ 309 (592)
+...++.|+.+.+..+++.+.+.|..++... -.+.+...+..|+.+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~ 60 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS 60 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHH
Confidence 4445566667666666666655554443221 112333444555543
No 282
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=34.41 E-value=13 Score=38.64 Aligned_cols=79 Identities=13% Similarity=0.037 Sum_probs=50.4
Q ss_pred HHccc-ccCCchhHHHHHHhhc---CCCHhhHHHHHHHHHhhCHHHHHHHHHHHhhhCCCCCC------HHHHHHHHHHH
Q 007695 198 ILSLE-KEEDPSPLLAEWKELL---QPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTN------VRDYSKLIDAH 267 (592)
Q Consensus 198 l~~~~-~~g~~~~A~~~~~~~~---~p~~~t~~~lL~~~~~~~~~~~~~~~~~~~~~~~~~p~------~~~y~~Li~~~ 267 (592)
|+.+| +.|.+++-+.+++.++ +...-.|+-|--.++.-..+...+.++.+.++-.++.- ...|.-++-.|
T Consensus 235 lv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY 314 (624)
T 3lvg_A 235 LINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLY 314 (624)
T ss_dssp GGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSSCTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHH
Confidence 56667 8999999999999874 45566666666666777777777766666555444321 12244555555
Q ss_pred HHcCCHHHH
Q 007695 268 AKENCLEDA 276 (592)
Q Consensus 268 ~~~g~~~~A 276 (592)
.+-.+++.|
T Consensus 315 ~~ydE~DnA 323 (624)
T 3lvg_A 315 DKYEEYDNA 323 (624)
T ss_dssp HHHTCHHHH
T ss_pred hcchhHHHH
Confidence 555555544
No 283
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=31.79 E-value=2.7e+02 Score=24.88 Aligned_cols=17 Identities=35% Similarity=0.460 Sum_probs=10.1
Q ss_pred CCHHHHHHHHHHHHHCC
Q 007695 446 NLLDKALNLLLELEKDG 462 (592)
Q Consensus 446 g~~~~A~~l~~~m~~~g 462 (592)
.+.+.|+-++-+|++.|
T Consensus 28 SDpDAAly~LaRml~~G 44 (204)
T 2r9g_A 28 SDVDAALHYLARLVEAG 44 (204)
T ss_dssp TCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 55556666666665555
No 284
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=31.66 E-value=2.4e+02 Score=23.95 Aligned_cols=50 Identities=12% Similarity=0.117 Sum_probs=30.6
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 007695 276 AERILKKMNENGIVPD-IVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQP 325 (592)
Q Consensus 276 A~~l~~~m~~~g~~pd-~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p 325 (592)
+.++|..|..+|+--. +..|......+-..|++.+|.++|+.-.+.+..|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 6666666666655432 3445566666666666666666666666655555
No 285
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=31.42 E-value=1.8e+02 Score=23.84 Aligned_cols=66 Identities=15% Similarity=0.131 Sum_probs=35.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCC
Q 007695 400 CTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNL--LDKALNLLLELEKDGFEPG 466 (592)
Q Consensus 400 ~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~--~~~A~~l~~~m~~~g~~p~ 466 (592)
.+.++.-|...|+.++|...++++..... ........+..++-+.+. .+.+..++..+...|+-+.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 45567777777777777777777642111 122333444444444432 3455666666666554433
No 286
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=31.27 E-value=51 Score=29.58 Aligned_cols=22 Identities=9% Similarity=0.176 Sum_probs=10.3
Q ss_pred HHHhCCCHHHHHHHHHHHHHcC
Q 007695 371 SFAQCGDVRGAGQITNIMRIEE 392 (592)
Q Consensus 371 ~~~~~g~~~~A~~~~~~m~~~g 392 (592)
..+..|+.+.+..+++.+...+
T Consensus 15 ~A~~~g~~~~v~~Ll~~~~~~~ 36 (241)
T 1k1a_A 15 IAVVQGNLPAVHRLVNLFQQGG 36 (241)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHhcC
Confidence 3344455555555554444433
No 287
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=30.11 E-value=29 Score=31.19 Aligned_cols=10 Identities=20% Similarity=0.325 Sum_probs=4.3
Q ss_pred HHHHHcCCHH
Q 007695 300 HMYSKAGNLD 309 (592)
Q Consensus 300 ~~~~~~g~~~ 309 (592)
...+..|+.+
T Consensus 47 ~~A~~~~~~~ 56 (240)
T 3eu9_A 47 HWAAINNRID 56 (240)
T ss_dssp HHHHHTTCHH
T ss_pred HHHHHhCCHH
Confidence 3344444443
No 288
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=29.74 E-value=2.7e+02 Score=23.95 Aligned_cols=53 Identities=13% Similarity=0.159 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH
Q 007695 275 DAERILKKMNENGIVPD-IVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDK 327 (592)
Q Consensus 275 ~A~~l~~~m~~~g~~pd-~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 327 (592)
.+..+|..|..+|+--. +..|......+-..|++.+|.++|..-.+.+..|-.
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 36667777777665433 444666666667777777777777777766655543
No 289
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=29.17 E-value=2.1e+02 Score=23.30 Aligned_cols=64 Identities=17% Similarity=0.000 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCC
Q 007695 469 TYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGI--EKKALQALGFLEAKKE 533 (592)
Q Consensus 469 ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~--~~~A~~~~~~m~~~~~ 533 (592)
....++.-|...|+.++|.+.++++....+. ...+...+..++-+.++ .+....++..+...+.
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~ 74 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 74 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 4567788888888999998888887532121 23344455555554432 3456677777766544
No 290
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=28.94 E-value=5.5e+02 Score=27.28 Aligned_cols=257 Identities=12% Similarity=0.038 Sum_probs=115.1
Q ss_pred cchHHHHHHHHc-ccccCCchhHHHHHHhhcCCCHhhHH-HHHHHH-HhhCHHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 007695 189 GKCKLITDKILS-LEKEEDPSPLLAEWKELLQPSRIDWI-NLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLID 265 (592)
Q Consensus 189 ~~~~~~~~~l~~-~~~~g~~~~A~~~~~~~~~p~~~t~~-~lL~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~ 265 (592)
|-...+...-+. +.+.++....+..+.. . |+..... ....+. ..+....+...+..........|+ .++.|+.
T Consensus 69 p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~-~-p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~--~c~~l~~ 144 (618)
T 1qsa_A 69 PPARTLQSRFVNELARREDWRGLLAFSPE-K-PGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPN--ACDKLFS 144 (618)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHCCS-C-CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCT--HHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCCHHHHHHhccC-C-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcH--HHHHHHH
Confidence 333334443443 3367777777775554 2 4333322 233333 455555566666666655444444 5677777
Q ss_pred HHHHcCCHHH--HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---------CCCCCHHH---HH
Q 007695 266 AHAKENCLED--AERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSH---------GFQPDKKV---YN 331 (592)
Q Consensus 266 ~~~~~g~~~~--A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~---------g~~pd~~t---~~ 331 (592)
.+.+.|.+.. ..+=++.+...| +...-..|+.... .+.....+.+..+... .+.++... +.
T Consensus 145 ~~~~~g~lt~~~~~~R~~~al~~~---~~~~a~~l~~~l~--~~~~~~a~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 219 (618)
T 1qsa_A 145 VWRASGKQDPLAYLERIRLAMKAG---NTGLVTVLAGQMP--ADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAA 219 (618)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHTT---CHHHHHHHHHTCC--GGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHhCC--HHHHHHHHHHHHHHhChHhHHHHHhccCCChhhHHHHH
Confidence 7777665432 222223333332 2221111211110 0000000001111110 01222221 11
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHH----HHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007695 332 SMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRS----FAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAY 407 (592)
Q Consensus 332 ~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~----~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~ 407 (592)
..+.-+.+ .+++.|...+....... ..+......+-.. +...+...++...+...... ..+.....-.+...
T Consensus 220 ~~~~rlar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~A 295 (618)
T 1qsa_A 220 VAFASVAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMA 295 (618)
T ss_dssp HHHHHHHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHH
T ss_pred HHHHHHHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHH
Confidence 12222333 36677777777775433 2233333222222 22334234455555554433 23333333344444
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007695 408 GQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELE 459 (592)
Q Consensus 408 ~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~ 459 (592)
.+.|+++.|...|..|...... .....-=+-.++...|+.++|..+|..+.
T Consensus 296 lr~~d~~~a~~~~~~l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a 346 (618)
T 1qsa_A 296 LGTGDRRGLNTWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLM 346 (618)
T ss_dssp HHHTCHHHHHHHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 5668888888888777542111 22222234446667788888877777664
No 291
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=28.49 E-value=2.7e+02 Score=23.59 Aligned_cols=31 Identities=10% Similarity=0.035 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 007695 504 IQVSLCDMYARAGIEKKALQALGFLEAKKEQ 534 (592)
Q Consensus 504 ~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~ 534 (592)
.|......+...|++.+|..+|+.-.+.+-.
T Consensus 103 fYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 133 (152)
T 4a1g_A 103 LYIAWAGHLEAQGELQHASAVLQRGIQNQAE 133 (152)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 3444444444444444444444444443333
No 292
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=28.08 E-value=2.9e+02 Score=23.87 Aligned_cols=110 Identities=15% Similarity=0.081 Sum_probs=49.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007695 291 DIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370 (592)
Q Consensus 291 d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~ 370 (592)
|...-...+.++.+.++.+ +...+..+.. .+|..+-...+.++.+.++.+ +...+..+.. .++..+-...+.
T Consensus 63 ~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~ 134 (211)
T 3ltm_A 63 DAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAF 134 (211)
T ss_dssp CHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHH
Confidence 4444444455555555432 2233333332 345555555555555555533 2333333332 235555555555
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 007695 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGD 412 (592)
Q Consensus 371 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~ 412 (592)
++.+.++.+ +...+..+.. .++..+-...+.++.+.+.
T Consensus 135 aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 135 ALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG 172 (211)
T ss_dssp HHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS
T ss_pred HHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc
Confidence 555555432 2222222221 3444555555555555554
No 293
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=27.83 E-value=1.3e+02 Score=25.72 Aligned_cols=65 Identities=9% Similarity=0.120 Sum_probs=32.1
Q ss_pred HHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCC
Q 007695 242 KVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNEN--GIVPDIVTSTVLVHMYSKAGN 307 (592)
Q Consensus 242 ~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~--g~~pd~~~~~~Li~~~~~~g~ 307 (592)
+.+...+...|++.+..= ..++..+...+..-.|.++++.+.+. +...+..|...-++.+...|-
T Consensus 18 ~~~~~~L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 18 ERFKKILRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHHHHHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 334444445555554432 34444444545555566666666554 444454444444445555543
No 294
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=27.81 E-value=4.1e+02 Score=25.41 Aligned_cols=72 Identities=18% Similarity=0.054 Sum_probs=44.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHCCCCCCHHHHHH
Q 007695 505 QVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGF--LQDAQRVHGLMEAQGFAASERLKVA 577 (592)
Q Consensus 505 ~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~--~~~A~~l~~~m~~~g~~pd~~~~~~ 577 (592)
...++.-|...|+.++|.+.++++...... .......+..++-+.+. .+...+++..+...|+-+...+..+
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~G 242 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRG 242 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHH
Confidence 457888899999999999999988421110 11123334445544433 4556778888887776655544333
No 295
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=27.78 E-value=1.6e+02 Score=24.72 Aligned_cols=43 Identities=12% Similarity=0.104 Sum_probs=17.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 007695 299 VHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAG 341 (592)
Q Consensus 299 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g 341 (592)
+..+...+..-.|.++++.+.+.+...+..|..-.+..+...|
T Consensus 33 L~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 33 VSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3333333334444444444444333334444444444444444
No 296
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=27.49 E-value=2.9e+02 Score=23.65 Aligned_cols=79 Identities=15% Similarity=0.135 Sum_probs=32.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007695 291 DIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370 (592)
Q Consensus 291 d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~ 370 (592)
|...-...+.++...++.+ +...+..+.. .++..+-...+.++.+.++.+ +...+..+.. .++..+-...+.
T Consensus 58 ~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~ 129 (201)
T 3ltj_A 58 DAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAF 129 (201)
T ss_dssp SHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCcHH-HHHHHHHHHc---CCCHHHHHHHHH
Confidence 4444444444444444432 2222222222 244445455555555555432 2222222221 234444444445
Q ss_pred HHHhCCC
Q 007695 371 SFAQCGD 377 (592)
Q Consensus 371 ~~~~~g~ 377 (592)
++.+.++
T Consensus 130 aL~~~~~ 136 (201)
T 3ltj_A 130 ALGEIGD 136 (201)
T ss_dssp HHHHHTC
T ss_pred HHHHhCC
Confidence 5444444
No 297
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=27.42 E-value=3.2e+02 Score=25.01 Aligned_cols=89 Identities=8% Similarity=-0.095 Sum_probs=39.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007695 403 LVEAYGQAGDPDQARSNFDYMIRL--GHKPD----DRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDW 476 (592)
Q Consensus 403 Li~~~~~~g~~~~A~~lf~~m~~~--g~~pd----~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~ 476 (592)
-+..+....++++|..++++.... +.++. .......+..-.....-.-+..+.+.+ .. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHHH
Confidence 356666677777777777665542 22210 011111122222222222222333333 21 3344445555566
Q ss_pred HHHcCCHHHHHHHHHHHH
Q 007695 477 LGRLQLINEAEQLLGKIS 494 (592)
Q Consensus 477 ~~~~g~~~~A~~l~~~m~ 494 (592)
+.+.|+.++|.++|=+..
T Consensus 101 L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHH
Confidence 666666666666655443
No 298
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=26.72 E-value=63 Score=31.06 Aligned_cols=290 Identities=10% Similarity=-0.007 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH---HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007695 261 SKLIDAHAKENCLEDAERILKKMNENGIVPDIVTST---VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337 (592)
Q Consensus 261 ~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~---~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~ 337 (592)
++.+...++.|+++.+..+++. |..+|...-. +-+...+..|+.+ +.+.+.+.|..++...........
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL~~----Gadvn~~~~~~g~TpLh~A~~~g~~~----iv~~Ll~~ga~~~~~~~~~~~~~~ 97 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLLEG----GANVNFQEEEGGWTPLHNAVQMSRED----IVELLLRHGADPVLRKKNGATPFI 97 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH----TCCTTCCCTTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHC----CCCCCccCCCCCcCHHHHHHHcCCHH----HHHHHHHcCCchhhhccCCCchhH
Q ss_pred HHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHH--------HHHHHHH
Q 007695 338 VNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTL--------LVEAYGQ 409 (592)
Q Consensus 338 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~--------Li~~~~~ 409 (592)
............+..-....+......-.+.+...+..|..+-+..+++.-....+......... .+...+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~ 177 (337)
T 4g8k_A 98 LAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAE 177 (337)
T ss_dssp HHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHH
T ss_pred HHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHH
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCCHHHHH
Q 007695 410 AGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGP--ATYTVLVDWLGRLQLINEAE 487 (592)
Q Consensus 410 ~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~--~ty~~li~~~~~~g~~~~A~ 487 (592)
.|+.+-+..++++....--..|....+.+..++........ ..+.+.+.+.|..++. ..-.+.+...+..|..+.+.
T Consensus 178 ~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~-~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~ 256 (337)
T 4g8k_A 178 KGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDV-EAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQ 256 (337)
T ss_dssp HTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTH-HHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHH
T ss_pred CCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccH-HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHH
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 007695 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQG 567 (592)
Q Consensus 488 ~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~g 567 (592)
.++..-...--..|..-.+.|..+..... .++.+.+.+.|..++..+ .+..-++.|+.+ +.+.+++.|
T Consensus 257 ~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~-----~~iv~~Ll~~GAd~n~~~---~L~~A~~~~~~~----iv~~Ll~~G 324 (337)
T 4g8k_A 257 RLLEQEHIEINDTDSDGKTALLLAVELKL-----KKIAELLCKRGASTDCGD---LVMTARRNYDHS----LVKVLLSHG 324 (337)
T ss_dssp HHHTSTTCCTTCBCTTSCBHHHHHHHTTC-----HHHHHHHHTTSCSSTTCC---HHHHHHHTTCHH----HHHHHHHTT
T ss_pred HHHHhcCCcccCcCCCCCCHHHHHHHcCC-----HHHHHHHHHCCCCCCCCC---HHHHHHHcCCHH----HHHHHHHCc
Q ss_pred CCCC
Q 007695 568 FAAS 571 (592)
Q Consensus 568 ~~pd 571 (592)
-.||
T Consensus 325 A~~d 328 (337)
T 4g8k_A 325 AKED 328 (337)
T ss_dssp CCC-
T ss_pred CCCC
No 299
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=26.07 E-value=3.1e+02 Score=23.47 Aligned_cols=110 Identities=14% Similarity=0.088 Sum_probs=47.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007695 291 DIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370 (592)
Q Consensus 291 d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~ 370 (592)
|...-...+..+.+.+.-+.. ..+-.+.. .++..+-...+.++.+.+..+ +...+..+.. .++..+-...+.
T Consensus 27 ~~~vr~~A~~~L~~~~~~~~~-~~L~~~l~---~~~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~ 98 (201)
T 3ltj_A 27 SYYVRRAAAYALGKIGDERAV-EPLIKALK---DEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAV 98 (201)
T ss_dssp CHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCChhHH-HHHHHHHc---CCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHH
Confidence 444444444444554443222 22222222 345555555555555555543 2233333322 245555555555
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 007695 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGD 412 (592)
Q Consensus 371 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~ 412 (592)
++.+.++.+....+.. +.. .++..+-...+.++.+.++
T Consensus 99 aL~~~~~~~~~~~L~~-~l~---d~~~~vr~~a~~aL~~~~~ 136 (201)
T 3ltj_A 99 ALGQIGDERAVEPLIK-ALK---DEDWFVRIAAAFALGEIGD 136 (201)
T ss_dssp HHHHHCCGGGHHHHHH-HTT---CSSHHHHHHHHHHHHHHTC
T ss_pred HHHHhCcHHHHHHHHH-HHc---CCCHHHHHHHHHHHHHhCC
Confidence 5555555332222222 221 3444444444555555544
No 300
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=25.31 E-value=5.3e+02 Score=26.00 Aligned_cols=152 Identities=14% Similarity=0.065 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHH--------CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHH
Q 007695 272 CLEDAERILKKMNE--------NGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGF----QPDKKVYNSMIMAYVN 339 (592)
Q Consensus 272 ~~~~A~~l~~~m~~--------~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~----~pd~~t~~~li~a~~~ 339 (592)
..++...++..... .++..+......++.. -.|+...+..+++.+..... .....+...+-.+..+
T Consensus 166 ~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~ 243 (447)
T 3pvs_A 166 STEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL--VNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGE 243 (447)
T ss_dssp CHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH--HCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHhh
Q ss_pred c------------------------CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC-----HHHHHHHHHHHHH
Q 007695 340 A------------------------GQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGD-----VRGAGQITNIMRI 390 (592)
Q Consensus 340 ~------------------------g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~-----~~~A~~~~~~m~~ 390 (592)
. ++++.|+.++.+|.+.|..|....-..+..+.-.-|. +..|...++....
T Consensus 244 ~~~~~dk~gd~~yd~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~ 323 (447)
T 3pvs_A 244 RSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTR 323 (447)
T ss_dssp CCCC---CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHH
T ss_pred hhhccCCccchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHH
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007695 391 EEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR 425 (592)
Q Consensus 391 ~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~ 425 (592)
.|.+-........+-.++.+-+...+...++...+
T Consensus 324 ~g~pe~~~~l~~~~~~la~~pksn~~~~a~~~a~~ 358 (447)
T 3pvs_A 324 VGPAEGERAIAQAIVYLACAPKSNAVYTAFKAALA 358 (447)
T ss_dssp SCHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHH
T ss_pred hCCcHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
No 301
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=25.23 E-value=1.8e+02 Score=24.22 Aligned_cols=57 Identities=12% Similarity=0.200 Sum_probs=26.3
Q ss_pred hhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 007695 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306 (592)
Q Consensus 248 ~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g 306 (592)
++..|++++..= ..++..+...+ .-.|.++++.+.+.+...+..|...-++.+...|
T Consensus 10 L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 10 LRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 334455554432 23333333334 4455555555555544445444444444444444
No 302
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=24.93 E-value=2.7e+02 Score=23.04 Aligned_cols=58 Identities=9% Similarity=0.127 Sum_probs=26.7
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 007695 283 MNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAG 341 (592)
Q Consensus 283 m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g 341 (592)
+.+.|++++..= ..++..+...+..-.|.++++.+.+.+...+..|..--+..+...|
T Consensus 13 l~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 13 LKETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 444555544332 2333344444444455555555554443344444444444444444
No 303
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=24.52 E-value=1.6e+02 Score=24.97 Aligned_cols=67 Identities=15% Similarity=0.130 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCC
Q 007695 399 SCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNL--LDKALNLLLELEKDGFEPG 466 (592)
Q Consensus 399 ~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~--~~~A~~l~~~m~~~g~~p~ 466 (592)
..+.++.-|...|+.++|...++++..... ........+..++-+.++ .+.+..++..+...|+-+.
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f-~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 345667777777777777777777643111 122333444444444322 3455666666666554433
No 304
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=24.05 E-value=2.4e+02 Score=23.36 Aligned_cols=64 Identities=11% Similarity=0.117 Sum_probs=46.9
Q ss_pred HHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 007695 245 ELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309 (592)
Q Consensus 245 ~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~ 309 (592)
...+...|++.+..= ..++..+...+..-.|.++++.+.+.+...+..|...-++.+...|-+.
T Consensus 10 ~~~l~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 10 LETLKETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHHHHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEE
Confidence 344567788877754 4556666667777889999999998877777777777777887777543
No 305
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=24.01 E-value=3.5e+02 Score=24.55 Aligned_cols=52 Identities=10% Similarity=0.245 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 007695 274 EDAERILKKMNENGIVPD-IVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQP 325 (592)
Q Consensus 274 ~~A~~l~~~m~~~g~~pd-~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p 325 (592)
+.+..+|..|..+|+--. +..|......+-..|++.+|..+|+.-.+.+..|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 345556666655554432 3345555555555666666666665555544444
No 306
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=23.85 E-value=31 Score=31.73 Aligned_cols=55 Identities=13% Similarity=0.002 Sum_probs=28.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-------HHHHHHHHH--HcCCHHHHHHHHHHH
Q 007695 264 IDAHAKENCLEDAERILKKMNENGIVPDIVT-------STVLVHMYS--KAGNLDRAKEAFESL 318 (592)
Q Consensus 264 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~-------~~~Li~~~~--~~g~~~~A~~~~~~m 318 (592)
+...++.|+.+....+++.+...|..++... .+.|..+.. +.|+.+-+..+++.-
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 4445566777777777776666655544332 223332221 446665555555543
No 307
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=23.38 E-value=4e+02 Score=23.77 Aligned_cols=36 Identities=6% Similarity=0.211 Sum_probs=18.2
Q ss_pred cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC
Q 007695 340 AGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376 (592)
Q Consensus 340 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g 376 (592)
-.+++.|+-.+.+|++.| .|.-..-..++-+.-..|
T Consensus 27 GSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 27 GSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp TTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred cCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 455666666666666666 444433344444443333
No 308
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=23.07 E-value=66 Score=32.25 Aligned_cols=16 Identities=0% Similarity=-0.371 Sum_probs=7.9
Q ss_pred ccCCchhHHHHHHhhc
Q 007695 203 KEEDPSPLLAEWKELL 218 (592)
Q Consensus 203 ~~g~~~~A~~~~~~~~ 218 (592)
..|+.+-+..+++.+.
T Consensus 23 ~~g~~~~v~~Ll~~g~ 38 (437)
T 1n11_A 23 FMGHLPIVKNLLQRGA 38 (437)
T ss_dssp HHTCHHHHHHHHHTTC
T ss_pred HCCCHHHHHHHHHcCC
Confidence 4455555545555443
No 309
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=22.78 E-value=3.9e+02 Score=24.04 Aligned_cols=92 Identities=14% Similarity=0.080 Sum_probs=0.0
Q ss_pred HHHHHHhc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 007695 438 MIAAYGKK---NLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQL-----INEAEQLLGKISELGEAPPFKIQVSLC 509 (592)
Q Consensus 438 li~a~~~~---g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~-----~~~A~~l~~~m~~~g~~p~~~~~~~Li 509 (592)
+|+++.++ .+.+.|+-++-+|++.|-.|.-..-..++-+....|. +..|...++.....|.+--.......+
T Consensus 38 ~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~Laqav 117 (213)
T 3ctd_A 38 VISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFPEGLFFLSQAS 117 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTTTTHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 007695 510 DMYARAGIEKKALQALGFLEA 530 (592)
Q Consensus 510 ~~~~~~g~~~~A~~~~~~m~~ 530 (592)
..++.+-+-..+ ..++...+
T Consensus 118 iyLA~APKSNs~-~A~~~A~~ 137 (213)
T 3ctd_A 118 LYLAISPKSNST-KSIFKAME 137 (213)
T ss_dssp HHHHHSCCCCGG-GHHHHHHH
T ss_pred HHHHcCCccHHH-HHHHHHHH
No 310
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=22.35 E-value=3.3e+02 Score=26.09 Aligned_cols=25 Identities=12% Similarity=0.295 Sum_probs=19.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 007695 260 YSKLIDAHAKENCLEDAERILKKMN 284 (592)
Q Consensus 260 y~~Li~~~~~~g~~~~A~~l~~~m~ 284 (592)
...+|.-|...|+.++|...++.+.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~ 30 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLN 30 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 4567788888888888888887764
No 311
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=22.25 E-value=2.1e+02 Score=24.24 Aligned_cols=66 Identities=17% Similarity=-0.011 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCC
Q 007695 468 ATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGI--EKKALQALGFLEAKKEQ 534 (592)
Q Consensus 468 ~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~--~~~A~~~~~~m~~~~~~ 534 (592)
.....++.-|...|+.++|.+.++++....+. ...+...+..++-+.++ .+.+..++..+...+..
T Consensus 10 kki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 10 KEIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 34667888888889999999998888532121 23444455555554333 34566677777665443
No 312
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=22.08 E-value=2.1e+02 Score=23.81 Aligned_cols=59 Identities=5% Similarity=0.041 Sum_probs=30.6
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 007695 282 KMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQ 342 (592)
Q Consensus 282 ~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~ 342 (592)
.+.+.|++++..= ..++..+...+ .-.|.++++.+.+.+...+..|..--+..+...|-
T Consensus 9 ~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 9 DLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 3445555555442 23334444444 45566666666655544555555555555555553
No 313
>4a0t_A Tail fiber protein; viral protein, caudovirales, podoviridae, beta-helix, beta-S; HET: 1PE; 1.90A {Enterobacteria phage T7} PDB: 4a0u_A
Probab=22.01 E-value=4.6 Score=34.35 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=18.1
Q ss_pred hcccCCCCCCccccHHH-HHHHHH
Q 007695 21 MIESASASPSQDFSEDL-WRTVWE 43 (592)
Q Consensus 21 ~~~~~~~~~~~~~~~~~-~~~~~~ 43 (592)
--|++.+.-|+-||.|| |||+|-
T Consensus 148 W~gSaGGgvSv~lsQDvR~RtIWI 171 (227)
T 4a0t_A 148 WSGSAGGGVSVTVSQDLRFRNIWI 171 (227)
T ss_dssp EESCCCTTCEEECSSCCTTCEEEE
T ss_pred hcccCCCceeecccccceeeEEEE
Confidence 34677778889999887 888884
No 314
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=21.64 E-value=3e+02 Score=24.48 Aligned_cols=93 Identities=14% Similarity=0.029 Sum_probs=0.0
Q ss_pred HHHHHHhc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 007695 438 MIAAYGKK---NLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQL-----INEAEQLLGKISELGEAPPFKIQVSLC 509 (592)
Q Consensus 438 li~a~~~~---g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~-----~~~A~~l~~~m~~~g~~p~~~~~~~Li 509 (592)
+|+++.++ .+.+.|+-++-+|++.|-.|.-..-..++-+....|. +..|...++.....|.+--.......+
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~Laqav 89 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGAYEGERAIAQAI 89 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHCCcHHHHHHHHHH
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 007695 510 DMYARAGIEKKALQALGFLEA 530 (592)
Q Consensus 510 ~~~~~~g~~~~A~~~~~~m~~ 530 (592)
..++.+-+-..+...++...+
T Consensus 90 iyLA~aPKSNs~y~A~~~A~~ 110 (201)
T 3bge_A 90 IYLSVAPKSNAVYTAFNTAKQ 110 (201)
T ss_dssp HHHHHSCCCCHHHHHHHHHHH
T ss_pred HHHHcCCccHHHHHHHHHHHH
No 315
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=21.62 E-value=2.7e+02 Score=23.25 Aligned_cols=13 Identities=15% Similarity=0.166 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHhc
Q 007695 484 NEAEQLLGKISEL 496 (592)
Q Consensus 484 ~~A~~l~~~m~~~ 496 (592)
-.|.++++.+.+.
T Consensus 43 ~sa~ei~~~l~~~ 55 (150)
T 2xig_A 43 LSPEEITHSIRQK 55 (150)
T ss_dssp BCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHh
Confidence 3344444444333
No 316
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=21.48 E-value=2.5e+02 Score=22.98 Aligned_cols=34 Identities=15% Similarity=0.223 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 007695 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAG 341 (592)
Q Consensus 308 ~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g 341 (592)
.-.|.++++.+.+.+...+..|..--+..+...|
T Consensus 34 ~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 34 HMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp SBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 3444444444444433334444444444444433
No 317
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=20.44 E-value=2.6e+02 Score=22.87 Aligned_cols=62 Identities=16% Similarity=0.199 Sum_probs=45.3
Q ss_pred HhhhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 007695 247 VLSEESFQTNVRDYSKLIDAHAKEN-CLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309 (592)
Q Consensus 247 ~~~~~~~~p~~~~y~~Li~~~~~~g-~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~ 309 (592)
.+++.|++.+..= ..++..+...+ ..-.|.++++.+.+.+...+..|...-++.+...|-+.
T Consensus 8 ~l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 8 ELRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 4556788877754 45566666666 67889999999999887778887777777777777543
No 318
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=20.16 E-value=95 Score=26.78 Aligned_cols=15 Identities=27% Similarity=0.310 Sum_probs=6.8
Q ss_pred HHHHHHHHHCCCCCC
Q 007695 557 QRVHGLMEAQGFAAS 571 (592)
Q Consensus 557 ~~l~~~m~~~g~~pd 571 (592)
.++.+.+.+.|..|+
T Consensus 158 ~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 158 QDIVKLLMENGADQS 172 (201)
T ss_dssp HHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHCCCCCC
Confidence 344444444454443
Done!