Query 007697
Match_columns 592
No_of_seqs 165 out of 250
Neff 4.2
Searched_HMMs 46136
Date Thu Mar 28 14:07:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007697.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007697hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09731 Mitofilin: Mitochondr 100.0 6.2E-56 1.3E-60 485.5 49.4 351 224-587 207-582 (582)
2 KOG1854 Mitochondrial inner me 100.0 8.3E-37 1.8E-41 332.7 36.4 264 322-591 364-653 (657)
3 COG4223 Uncharacterized protei 99.9 1.6E-22 3.4E-27 208.8 19.6 290 251-586 121-419 (422)
4 PF09731 Mitofilin: Mitochondr 97.8 0.0019 4.1E-08 72.3 20.4 71 340-413 353-424 (582)
5 KOG1029 Endocytic adaptor prot 79.9 19 0.00042 43.0 12.1 48 457-509 471-518 (1118)
6 PF06705 SF-assemblin: SF-asse 79.1 79 0.0017 32.3 23.1 33 374-406 133-165 (247)
7 PRK06569 F0F1 ATP synthase sub 77.6 75 0.0016 31.1 16.4 52 287-338 53-105 (155)
8 PF11932 DUF3450: Protein of u 74.9 1E+02 0.0022 31.4 15.2 89 278-369 37-139 (251)
9 PLN03229 acetyl-coenzyme A car 73.0 65 0.0014 38.6 14.0 45 287-333 431-478 (762)
10 PRK00409 recombination and DNA 68.8 2.3E+02 0.0049 34.2 17.6 19 520-538 708-726 (782)
11 KOG2391 Vacuolar sorting prote 67.8 2E+02 0.0043 31.8 18.7 35 452-487 311-345 (365)
12 PF10146 zf-C4H2: Zinc finger- 67.2 1E+02 0.0022 31.9 12.5 85 347-446 19-103 (230)
13 PRK09174 F0F1 ATP synthase sub 64.9 1.6E+02 0.0035 29.7 18.1 25 286-310 95-119 (204)
14 PF09726 Macoilin: Transmembra 63.4 3.3E+02 0.0071 32.7 20.4 14 416-429 589-602 (697)
15 KOG0742 AAA+-type ATPase [Post 63.4 2.8E+02 0.0061 31.9 25.2 22 340-361 197-218 (630)
16 TIGR01069 mutS2 MutS2 family p 61.2 2.8E+02 0.006 33.5 16.3 20 520-539 697-716 (771)
17 PF14223 UBN2: gag-polypeptide 53.7 1.4E+02 0.003 26.5 9.6 58 432-489 39-113 (119)
18 PF05010 TACC: Transforming ac 53.6 2.6E+02 0.0057 28.6 18.6 10 438-447 189-198 (207)
19 PF12128 DUF3584: Protein of u 53.0 5.8E+02 0.012 32.3 25.3 26 466-491 762-789 (1201)
20 PF06705 SF-assemblin: SF-asse 52.9 2.7E+02 0.0058 28.4 21.8 46 355-401 137-189 (247)
21 PRK13454 F0F1 ATP synthase sub 49.6 2.7E+02 0.0058 27.4 16.9 23 286-308 73-95 (181)
22 COG4487 Uncharacterized protei 46.3 5E+02 0.011 29.6 16.2 72 326-397 112-185 (438)
23 PF05667 DUF812: Protein of un 46.0 4.4E+02 0.0095 31.1 14.3 83 348-448 354-436 (594)
24 COG3118 Thioredoxin domain-con 46.0 1.1E+02 0.0024 33.1 8.9 112 451-575 84-212 (304)
25 KOG0161 Myosin class II heavy 45.9 9.2E+02 0.02 32.6 20.0 37 278-314 957-993 (1930)
26 KOG4460 Nuclear pore complex, 45.1 5.9E+02 0.013 30.2 16.4 47 359-406 635-681 (741)
27 smart00787 Spc7 Spc7 kinetocho 43.0 4.6E+02 0.01 28.3 21.2 21 267-287 114-134 (312)
28 KOG1029 Endocytic adaptor prot 42.8 7.4E+02 0.016 30.6 19.3 20 217-236 220-239 (1118)
29 PRK13428 F0F1 ATP synthase sub 42.1 5.5E+02 0.012 28.9 22.8 23 286-308 43-65 (445)
30 KOG1265 Phospholipase C [Lipid 40.6 8.4E+02 0.018 30.6 16.7 36 29-68 736-771 (1189)
31 KOG0163 Myosin class VI heavy 39.1 8.4E+02 0.018 30.2 15.3 16 502-517 1172-1188(1259)
32 KOG0161 Myosin class II heavy 38.7 1.2E+03 0.025 31.7 22.5 8 438-445 1160-1167(1930)
33 PF14559 TPR_19: Tetratricopep 38.1 64 0.0014 25.0 4.5 37 522-559 21-57 (68)
34 KOG0971 Microtubule-associated 37.9 9.3E+02 0.02 30.3 21.1 17 468-484 516-532 (1243)
35 PRK08476 F0F1 ATP synthase sub 37.9 3.5E+02 0.0077 25.5 16.9 24 286-309 49-72 (141)
36 KOG1265 Phospholipase C [Lipid 37.6 9.3E+02 0.02 30.3 15.7 20 371-390 1122-1141(1189)
37 KOG0804 Cytoplasmic Zn-finger 36.9 7.1E+02 0.015 28.7 16.2 24 382-405 430-453 (493)
38 KOG3915 Transcription regulato 36.3 7.5E+02 0.016 28.8 14.6 33 117-151 365-397 (641)
39 KOG0994 Extracellular matrix g 36.3 1.1E+03 0.024 30.7 21.8 8 270-277 1567-1574(1758)
40 PF13432 TPR_16: Tetratricopep 36.2 1E+02 0.0023 23.8 5.4 44 530-575 1-44 (65)
41 TIGR01069 mutS2 MutS2 family p 35.7 7.1E+02 0.015 30.1 14.4 12 232-243 405-416 (771)
42 KOG2072 Translation initiation 34.6 9.9E+02 0.022 29.7 18.8 9 267-275 662-670 (988)
43 PF07721 TPR_4: Tetratricopept 33.9 57 0.0012 22.0 3.0 23 528-550 3-25 (26)
44 KOG2391 Vacuolar sorting prote 33.3 7.2E+02 0.016 27.7 14.1 24 318-341 215-238 (365)
45 PF07926 TPR_MLP1_2: TPR/MLP1/ 33.2 4E+02 0.0088 24.8 17.0 21 379-399 97-117 (132)
46 COG4026 Uncharacterized protei 32.8 5.4E+02 0.012 27.2 11.0 15 388-402 192-206 (290)
47 KOG0163 Myosin class VI heavy 32.6 1.1E+03 0.023 29.4 20.3 19 463-481 1060-1078(1259)
48 PRK14474 F0F1 ATP synthase sub 32.2 6E+02 0.013 26.4 17.1 21 287-307 48-68 (250)
49 PF00901 Orbi_VP5: Orbivirus o 32.0 8.7E+02 0.019 28.3 19.4 47 389-437 185-232 (508)
50 KOG1854 Mitochondrial inner me 31.6 9.8E+02 0.021 28.7 18.0 21 392-412 466-486 (657)
51 KOG1899 LAR transmembrane tyro 31.5 1E+03 0.022 28.8 17.8 99 376-493 220-318 (861)
52 KOG2668 Flotillins [Intracellu 30.8 8.1E+02 0.018 27.6 19.1 39 356-399 269-307 (428)
53 PF10146 zf-C4H2: Zinc finger- 30.6 6.3E+02 0.014 26.2 15.9 46 323-369 41-86 (230)
54 KOG1118 Lysophosphatidic acid 30.4 7.8E+02 0.017 27.2 13.9 49 259-307 100-148 (366)
55 PRK04778 septation ring format 30.4 9E+02 0.019 27.9 27.1 89 471-568 467-564 (569)
56 PF07798 DUF1640: Protein of u 29.4 5.4E+02 0.012 25.1 19.8 18 348-365 85-102 (177)
57 KOG0971 Microtubule-associated 29.3 1.3E+03 0.027 29.3 17.3 29 318-346 314-343 (1243)
58 KOG2911 Uncharacterized conser 27.8 9.6E+02 0.021 27.4 16.9 85 417-508 317-405 (439)
59 KOG0976 Rho/Rac1-interacting s 27.2 1.3E+03 0.028 28.8 17.7 15 216-230 155-169 (1265)
60 PRK08475 F0F1 ATP synthase sub 26.6 6E+02 0.013 24.6 15.6 21 287-307 65-85 (167)
61 PRK13455 F0F1 ATP synthase sub 26.5 6.1E+02 0.013 24.7 19.3 21 287-307 70-90 (184)
62 PF11932 DUF3450: Protein of u 26.1 7.2E+02 0.016 25.4 17.0 17 423-439 111-127 (251)
63 PF09920 DUF2150: Uncharacteri 26.0 5.7E+02 0.012 26.1 9.7 112 454-571 42-176 (190)
64 CHL00118 atpG ATP synthase CF0 26.0 5.8E+02 0.013 24.3 17.0 21 287-307 65-85 (156)
65 PF15070 GOLGA2L5: Putative go 25.0 1.2E+03 0.026 27.7 19.7 35 376-410 146-183 (617)
66 KOG1103 Predicted coiled-coil 24.8 1E+03 0.022 26.8 20.4 25 313-337 131-155 (561)
67 TIGR02284 conserved hypothetic 24.4 4.4E+02 0.0095 24.8 8.3 23 484-506 48-70 (139)
68 PRK13460 F0F1 ATP synthase sub 23.4 6.8E+02 0.015 24.2 17.1 21 287-307 59-79 (173)
69 KOG4466 Component of histone d 22.5 1E+03 0.022 25.9 13.8 49 287-338 59-107 (291)
70 PRK05759 F0F1 ATP synthase sub 22.4 6.4E+02 0.014 23.5 17.1 22 286-307 46-67 (156)
71 PRK06568 F0F1 ATP synthase sub 22.2 7.5E+02 0.016 24.2 17.5 21 287-307 47-67 (154)
72 KOG0577 Serine/threonine prote 22.0 1.4E+03 0.031 27.8 13.1 41 293-333 792-837 (948)
73 PF13428 TPR_14: Tetratricopep 21.8 1.1E+02 0.0025 22.5 3.1 27 527-553 2-28 (44)
74 PF07956 DUF1690: Protein of U 21.6 7.3E+02 0.016 23.9 9.5 15 433-447 125-141 (142)
75 PRK10780 periplasmic chaperone 21.5 7.3E+02 0.016 23.8 11.4 109 272-394 26-137 (165)
76 TIGR01837 PHA_granule_1 poly(h 21.4 6.6E+02 0.014 23.3 9.6 12 266-277 8-19 (118)
77 TIGR02795 tol_pal_ybgF tol-pal 21.2 2.4E+02 0.0053 23.4 5.4 56 526-582 39-96 (119)
78 PF11137 DUF2909: Protein of u 21.0 85 0.0018 26.5 2.5 30 55-85 30-63 (63)
79 PRK15359 type III secretion sy 21.0 3.1E+02 0.0068 25.3 6.5 67 521-589 53-119 (144)
80 PTZ00491 major vault protein; 21.0 1.7E+03 0.036 27.8 17.1 7 381-387 777-783 (850)
81 PRK15363 pathogenicity island 20.1 2.9E+02 0.0063 27.2 6.3 70 520-591 28-98 (157)
No 1
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=100.00 E-value=6.2e-56 Score=485.52 Aligned_cols=351 Identities=30% Similarity=0.447 Sum_probs=295.2
Q ss_pred CcchhhhhhccccccccCCCcchhhhh-hhHHhhhcccc--cCCcHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 007697 224 SPASLLDAYHLRDKIDEGIDKATEDFI-NVMEELNNGYL--SKDGKVVLDFLQAIHAAEQRQAELDGRAFAEEKRALKEK 300 (592)
Q Consensus 224 ~~~~l~~~y~l~~~~~~~~~~~~e~~~-~~~~~l~~~~~--~~~~k~~ld~i~ai~aaek~Qae~Da~~~~eel~~L~ek 300 (592)
.-+.+.+.|...+..+..... -...+ +....++++.+ .+++.++.++...|+.-.+..++.+........+.|+++
T Consensus 207 ~~~~i~~~~~~~~~~~~~~~e-l~~~~~~l~~~~~~~~~~~~~~~~~i~~a~~~i~~L~~~l~~l~~~~~~~l~~~L~~q 285 (582)
T PF09731_consen 207 SLPKIVEEYKELVEEEPEVQE-LVSIFNDLIESINEGNLSESDLNSLIAHAKERIDALQKELAELKEEEEEELERALEEQ 285 (582)
T ss_pred hhhhhhhhhhhhhhhhhhHHH-HHHhccchhhhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777778776665555510 00112 33455566777 778999999999999999999999998888888999999
Q ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 007697 301 YEKELRDSRARELMR-----TEEAAILEKELKRERAKAAATI--------KSLQEKMEEKLRMELEQKENEAESKLKNAL 367 (592)
Q Consensus 301 ye~eL~d~~a~EL~~-----~~e~a~l~~efE~Er~kla~~~--------K~~~e~~eekLknELeqvE~ERegRL~kLe 367 (592)
|+..+...++..+++ .++...|+.+|++++.++...| +.+.+.++++|+|+|..+..|...+..+.
T Consensus 286 ~~e~~~~~~~~~~~~le~~~~~~~~~~~~e~~~~~~~l~~~~~~~L~~eL~~~~~~~~~~l~~~l~~~~~e~~~~~~~~- 364 (582)
T PF09731_consen 286 REELLSKLREELEQELEEKRAELEEELREEFEREREELEEKYEEELRQELKRQEEAHEEHLKNELREQAIELQREFEKE- 364 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 886566644443332 2455678888888888765543 23455566666666665555554444333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcC-----CChHHHHHH
Q 007697 368 ELAKAEIAASIAREKVAQIEKMAEANLHINALCMAFYARSEEARKSYFAHKLALGALALEDALSRG-----LPIQKEIDT 442 (592)
Q Consensus 368 eLakAEl~~~la~Erv~~lekLa~~n~rv~aL~~Al~Arsee~rks~~v~kLalAa~AL~~Al~~g-----~Pf~~EL~a 442 (592)
+.+++.+||..++.+|.+++.+|++|+.++..+++..+.++.+|+||++|.+|++++.+| .||..||.+
T Consensus 365 ------i~~~v~~Er~~~~~~l~~~~~~~~~le~~~~~~~~~~~~~~~~~~l~~a~~~l~~~l~~~~~~~~~p~~~el~~ 438 (582)
T PF09731_consen 365 ------IKEKVEQERNGRLAKLAELNSRLKALEEALDARSEAEDENRRAQQLWLAVDALKSALDSGNAGSPRPFEDELRA 438 (582)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCHHHHHHH
Confidence 478899999999999999999999999999999999999999999999999999999998 999999999
Q ss_pred HHhhhcCCCCchhHHHHHhcCchhHhhcCCCCHHHHHHHHHHHHHHHhHhhcCCCCCCCHHHHHHHHHhhhcccc-cc--
Q 007697 443 LYTYLDGIEKDSVLDLVLSSLPEETRYHGTETLLQLNQKFDALKGTLRHFSLIPPGGGGILTHSLAHIASWLKVK-EA-- 519 (592)
Q Consensus 443 Lk~la~g~~~D~lV~aaLsSLp~~aae~GVpT~aqL~~RF~~Va~~~RraSLvPe~gaGllshllS~l~S~L~fk-~G-- 519 (592)
|+.++ ++|++|+++|++||+.+.++||+|.++|++||+.|++.||+++|||++|+||++|++||++|+|+|+ .+
T Consensus 439 l~~~~---~~d~~v~~~l~~l~~~a~~~Gv~s~~~L~~rf~~v~~~~r~~~l~~~~~~g~~~~~~s~~~S~l~~~~~~~~ 515 (582)
T PF09731_consen 439 LKELA---PDDELVDAALSSLPPEAAQRGVPSEAQLRNRFERVAPEVRRASLVPPEGAGLLGHLLSYLFSLLLFRPKGGE 515 (582)
T ss_pred HHHhC---CCChHHHHHHHhcCHHHhhCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHheeeeecCCCC
Confidence 99998 4899999999999999999999999999999999999999999998777999999999999999997 54
Q ss_pred -CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007697 520 -DQANDGIESVICRVESYLREGKLAEAADALEEGVRGSQAEEIVFDWVRRARNRAITEQGLTFLQSYAT 587 (592)
Q Consensus 520 -~~~GdDveSILARAE~~L~~GDLd~AarELen~L~G~~Ar~la~DWl~eAR~RLEveQAl~vL~a~Aa 587 (592)
++.|+|+++||+||++||.+|||+.|+++| |+|+|| |+.++.|||++||+||||+|++++|.+||+
T Consensus 516 ~~~~~~d~~~ilarae~~l~~gdL~~A~~~~-~~L~g~-~~~~a~dW~~~ar~~le~~q~~~~l~a~a~ 582 (582)
T PF09731_consen 516 VDPEGDDVESILARAEYYLERGDLDKAAREL-NQLKGW-ARKLAADWLKEARRRLEVEQALEVLEAHAA 582 (582)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH-HhCchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 579999999999999999999999999999 799999 999999999999999999999999999985
No 2
>KOG1854 consensus Mitochondrial inner membrane protein (mitofilin) [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=8.3e-37 Score=332.69 Aligned_cols=264 Identities=22% Similarity=0.331 Sum_probs=216.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-------HHHHhHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 007697 322 LEKELKRERAKAAATIKSLQEKMEEKLRMELEQ-KEN-------EAESKLKN----ALELAKAEIAASIAREKVAQIEKM 389 (592)
Q Consensus 322 l~~efE~Er~kla~~~K~~~e~~eekLknELeq-vE~-------ERegRL~k----LeeLakAEl~~~la~Erv~~lekL 389 (592)
+..|++.++.+++.++..+-+.+..++++||.. .-. .-...+.. |.--++.++.+++.+||.-+-.++
T Consensus 364 ~~~~~~~h~~~~~~E~~~~~~~~~~~~~~el~~ql~~qa~ah~dhik~vvr~q~q~~~~e~~~~~~e~~l~ernl~~~qv 443 (657)
T KOG1854|consen 364 LEYELEAHRRELQQELFKLIEEIRSSSKNELRNQLKRQAKAHLDHIKDVVRQQEQLLTIEFKQKLEEAVLQERNLHSSQV 443 (657)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcchHhHH
Confidence 335555666666555544445556666666521 100 00001111 011123457899999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcC------CChHHHHHHHHhhhcCCCCchhHHHHHhcC
Q 007697 390 AEANLHINALCMAFYARSEEARKSYFAHKLALGALALEDALSRG------LPIQKEIDTLYTYLDGIEKDSVLDLVLSSL 463 (592)
Q Consensus 390 a~~n~rv~aL~~Al~Arsee~rks~~v~kLalAa~AL~~Al~~g------~Pf~~EL~aLk~la~g~~~D~lV~aaLsSL 463 (592)
..+-.++.++..||-.+......+...++||++|.+|++.+..| .|+...+.+++..+ ++|+||.+++.+|
T Consensus 444 g~aL~rLrgie~aL~~~~~~~~e~r~a~q~w~ac~nlk~s~~~g~~e~r~~pLg~~vn~~k~~~---~~delv~a~~~~i 520 (657)
T KOG1854|consen 444 GKALSRLRGIEQALQERVRAELEARKAKQLWLACSNLKDSLNKGHYEMRRHPLGKHVNALKEVT---KDDELVAAALDSI 520 (657)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhccccccccCchhHHHHHHhccC---CcHHHHHHHHHhc
Confidence 98899999999999998887777777888999999999999665 69999999998887 5899999999999
Q ss_pred chhHhhcCCCCHHHHHHHHHHHHHHHhHhhcCCCCCCCHHHHHHHHHhhhcccc--c-c-----CCCCCCHHHHHHHHHH
Q 007697 464 PEETRYHGTETLLQLNQKFDALKGTLRHFSLIPPGGGGILTHSLAHIASWLKVK--E-A-----DQANDGIESVICRVES 535 (592)
Q Consensus 464 p~~aae~GVpT~aqL~~RF~~Va~~~RraSLvPe~gaGllshllS~l~S~L~fk--~-G-----~~~GdDveSILARAE~ 535 (592)
|+.+..+||+|..+|++||..|.+.+|+++|||++||++..|++| ++|+|+|+ . | +|...|.+.||+||+|
T Consensus 521 pk~~~~rgiysee~L~~RF~~l~ki~rr~a~l~e~gg~lg~yf~s-l~Slfl~~~~q~g~~~~~~p~~~d~~~iLsrA~~ 599 (657)
T KOG1854|consen 521 PKEADTRGIYSEEDLRNRFNTLSKIARRTALLPEEGGFLGQYFLS-LQSLFLLSPQQLGNPVFLDPNITDTYKILSRARY 599 (657)
T ss_pred ccccccCCCCCHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHH-hhhheeecHhhcCCCccCCcccccHHHHHHHHHH
Confidence 999999999999999999999999999999999996666666666 99999996 2 3 4577899999999999
Q ss_pred HHhcCCHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 007697 536 YLREGKLAEAADALEEGVRGSQAEEIVFDWVRRARNRAITEQGLTFLQSYATCLSI 591 (592)
Q Consensus 536 ~L~~GDLd~AarELen~L~G~~Ar~la~DWl~eAR~RLEveQAl~vL~a~Aa~~SL 591 (592)
||..|||+.|+|+| |.|+|| ||.||.|||++||++||++|++++|.|||+++||
T Consensus 600 ~~~~gdl~~Avr~v-~lLkG~-pr~va~dWi~daRr~lE~qql~eiL~AhAa~ssi 653 (657)
T KOG1854|consen 600 HLLKGDLDDAVRVV-NLLKGW-PRKVARDWIKDARRRLETQQLVEILKAHAAASSI 653 (657)
T ss_pred HHhcccHHHHHHHH-HHhccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999 899999 9999999999999999999999999999999987
No 3
>COG4223 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.90 E-value=1.6e-22 Score=208.77 Aligned_cols=290 Identities=22% Similarity=0.215 Sum_probs=200.9
Q ss_pred hhHHhhhcccccCCcHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 007697 251 NVMEELNNGYLSKDGKVVLDFLQAIHAAEQRQAELDGRAFAEEKRALKEKYEKELRDSRARELMRTE-EAAILEKELKRE 329 (592)
Q Consensus 251 ~~~~~l~~~~~~~~~k~~ld~i~ai~aaek~Qae~Da~~~~eel~~L~ekye~eL~d~~a~EL~~~~-e~a~l~~efE~E 329 (592)
-..+++++.+|. +|.|.|-...++.++...-+----.....++..|+...... +. ....+ -++-.-.-||++
T Consensus 121 ~~~~g~iaAgi~-gg~IAla~ag~Lq~ag~v~apg~~~a~~~e~a~l~seiagl-k~-----~g~a~~~Aapd~s~leqr 193 (422)
T COG4223 121 AGGEGVIAAGID-GGLIALAGAGALQYAGRVPAPGVGDAGLLEIAFLKSEIAGL-KW-----FGPANAPAAPDSSGLEQR 193 (422)
T ss_pred cCcccceecccc-cceeeccCcchhhhccccCCCCCccchhHHHHHHHHHHHHH-HH-----hccccCccCcccchhHHh
Confidence 347788887775 88888888888888777654222222445555555543321 10 00000 011122344444
Q ss_pred HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007697 330 RAKAAAT-------IKSLQEKMEEKLRMELEQKENEAESKLKNALELAKAEIAASIAREKVAQIEKMAEANLHINALCMA 402 (592)
Q Consensus 330 r~kla~~-------~K~~~e~~eekLknELeqvE~ERegRL~kLeeLakAEl~~~la~Erv~~lekLa~~n~rv~aL~~A 402 (592)
.+.+.+. +|.++.. -.-|.++.. ++-.||-..+-..++++.||.+|+..
T Consensus 194 iaal~aa~~~p~p~v~al~~a----------------vtal~~~~s--------alp~ersta~Aa~ael~gRiaalEqs 249 (422)
T COG4223 194 IAALEAASAEPAPRVKALEVA----------------VTALLPLES--------ALPAERSTALAAVAELNGRIAALEQS 249 (422)
T ss_pred hhhhhhhhcCCCCchhHHHHH----------------HHhccchhh--------ccchhhhhHHHHHHHHhhhHHHHHHH
Confidence 4433211 1111111 011111111 11122333333333444455554444
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHhhhcCCCCchhHHHHHhcCchhHhhcCCCCHHHHHHHH
Q 007697 403 FYARSEEARKSYFAHKLALGALALEDALSRGLPIQKEIDTLYTYLDGIEKDSVLDLVLSSLPEETRYHGTETLLQLNQKF 482 (592)
Q Consensus 403 l~Arsee~rks~~v~kLalAa~AL~~Al~~g~Pf~~EL~aLk~la~g~~~D~lV~aaLsSLp~~aae~GVpT~aqL~~RF 482 (592)
+....+... ..+++++.+|+.++++|.||..||+.|..+++ +||-|. +|.+ ++.+||||+.+|..+|
T Consensus 250 ~ne~ad~ie-----aA~aiaatalKtAidrggPF~aELdtL~~VaP---~dP~l~----~L~~-~A~tGvPTRaeL~~qF 316 (422)
T COG4223 250 LNEPADDIE-----AALAIAATALKTAIDRGGPFLAELDTLESVAP---GDPALA----ALRP-YAATGVPTRAELATQF 316 (422)
T ss_pred hccchhHHH-----HHHHHHHHHHHHHHhcCCCchHHHhhHhhhCC---CChhhH----HhhH-HHhcCCCcHHHHHHHH
Confidence 433211111 12567889999999999999999999999995 788655 5654 7799999999999999
Q ss_pred HHHHHHHhHhhcCCCCCCCHHHHHHHHHhhhccccc-cCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCChhhHHH
Q 007697 483 DALKGTLRHFSLIPPGGGGILTHSLAHIASWLKVKE-ADQANDGIESVICRVESYLREGKLAEAADALEEGVRGSQAEEI 561 (592)
Q Consensus 483 ~~Va~~~RraSLvPe~gaGllshllS~l~S~L~fk~-G~~~GdDveSILARAE~~L~~GDLd~AarELen~L~G~~Ar~l 561 (592)
..|++.+..++.-|+-++|||.++++.++|++.||. |+++|.+++.+++|+|..|++|||+.|+-|| |+|+.. +|.+
T Consensus 317 ~~~AnamvsA~~~pd~nagl~~rL~~Sa~slVsVRpVGsveG~t~~a~iARmEa~L~~GDl~gA~~ew-d~Lpea-aKaa 394 (422)
T COG4223 317 GAVANAMVSASNNPDPNAGLFDRLRSSASSLVSVRPVGSVEGSTPDAMIARMEAALDNGDLEGAVLEW-DSLPEA-AKAA 394 (422)
T ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHHhcceeeeeccccCCCCcchHHHHHHHHHhccchHhHHHhh-ccCcHH-HHHh
Confidence 999999999998887779999999999999999985 7999999999999999999999999999999 899999 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 007697 562 VFDWVRRARNRAITEQGLTFLQSYA 586 (592)
Q Consensus 562 a~DWl~eAR~RLEveQAl~vL~a~A 586 (592)
..||.....+|+||+..|+.+.+-+
T Consensus 395 ~a~f~~~l~aRieve~~V~a~va~a 419 (422)
T COG4223 395 SADFAVKLKARIEVETLVDALVADA 419 (422)
T ss_pred hhhHHHHHHhhhhHHHHHHHHHhhh
Confidence 9999999999999999999887654
No 4
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=97.78 E-value=0.0019 Score=72.34 Aligned_cols=71 Identities=18% Similarity=0.242 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 007697 340 LQEKMEEKLRMEL-EQKENEAESKLKNALELAKAEIAASIAREKVAQIEKMAEANLHINALCMAFYARSEEARKS 413 (592)
Q Consensus 340 ~~e~~eekLknEL-eqvE~ERegRL~kLeeLakAEl~~~la~Erv~~lekLa~~n~rv~aL~~Al~Arsee~rks 413 (592)
+...+..++..+| +++++||+||+++|.++. ..+..- .+-+.........+.++++||.|+.+........
T Consensus 353 ~~~e~~~~~~~~i~~~v~~Er~~~~~~l~~~~-~~~~~l--e~~~~~~~~~~~~~~~~~~l~~a~~~l~~~l~~~ 424 (582)
T PF09731_consen 353 QAIELQREFEKEIKEKVEQERNGRLAKLAELN-SRLKAL--EEALDARSEAEDENRRAQQLWLAVDALKSALDSG 424 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4444555666667 568999999999999883 111111 1122233333477888999999999987665554
No 5
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.93 E-value=19 Score=43.02 Aligned_cols=48 Identities=21% Similarity=0.292 Sum_probs=27.9
Q ss_pred HHHHhcCchhHhhcCCCCHHHHHHHHHHHHHHHhHhhcCCCCCCCHHHHHHHH
Q 007697 457 DLVLSSLPEETRYHGTETLLQLNQKFDALKGTLRHFSLIPPGGGGILTHSLAH 509 (592)
Q Consensus 457 ~aaLsSLp~~aae~GVpT~aqL~~RF~~Va~~~RraSLvPe~gaGllshllS~ 509 (592)
..+|+.+.. ..+.-+.+..+|..|.......+.+ |+|+- -.|.|=+-.
T Consensus 471 kt~ie~~~~-q~e~~isei~qlqarikE~q~kl~~--l~~Ek--q~l~~qlkq 518 (1118)
T KOG1029|consen 471 KTEIEEVTK-QRELMISEIDQLQARIKELQEKLQK--LAPEK--QELNHQLKQ 518 (1118)
T ss_pred HHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHh--hhhHH--HHHHHHHHH
Confidence 344444443 3356677778888888777666644 45654 355554333
No 6
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=79.15 E-value=79 Score=32.27 Aligned_cols=33 Identities=6% Similarity=0.062 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007697 374 IAASIAREKVAQIEKMAEANLHINALCMAFYAR 406 (592)
Q Consensus 374 l~~~la~Erv~~lekLa~~n~rv~aL~~Al~Ar 406 (592)
+.+.+..||..+.++=..+-.++..+...+...
T Consensus 133 l~~~~~~Er~~R~erE~~i~krl~e~~~~l~~~ 165 (247)
T PF06705_consen 133 LQEAFENERNEREEREENILKRLEEEENRLQEK 165 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666655555555555554444443
No 7
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=77.59 E-value=75 Score=31.15 Aligned_cols=52 Identities=17% Similarity=0.286 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 007697 287 GRAFAEEKRALKEKYEKELRDSRAREL-MRTEEAAILEKELKRERAKAAATIK 338 (592)
Q Consensus 287 a~~~~eel~~L~ekye~eL~d~~a~EL-~~~~e~a~l~~efE~Er~kla~~~K 338 (592)
|....++...+..+|+.+|.+.++..- +..+-.+.+..+.+.++.++.+.++
T Consensus 53 Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~a~~~~~~~~~ea~L~ 105 (155)
T PRK06569 53 ADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLESEFLIKKKNLEQDLK 105 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555777888899999999998554432 2344466677777777777655554
No 8
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=74.88 E-value=1e+02 Score=31.44 Aligned_cols=89 Identities=24% Similarity=0.289 Sum_probs=44.3
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH
Q 007697 278 AEQRQAELDGRAFAEEKRALKEKYEKELRDSRARELMRTEEAAILEKELKRERAKAAATIKSLQEK------MEEKLRME 351 (592)
Q Consensus 278 aek~Qae~Da~~~~eel~~L~ekye~eL~d~~a~EL~~~~e~a~l~~efE~Er~kla~~~K~~~e~------~eekLknE 351 (592)
+.+.|...|. +.++.+.|..+|..-.+. -+.--.|.......-...+++++.+...+..+... +-.++-++
T Consensus 37 ~~~sQ~~id~--~~~e~~~L~~e~~~l~~e-~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~ 113 (251)
T PF11932_consen 37 AQQSQKRIDQ--WDDEKQELLAEYRQLERE-IENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDE 113 (251)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666666 788888888888744333 22211233333333444555555554444322111 11223333
Q ss_pred HHH--------HHHHHHHhHHHHHHH
Q 007697 352 LEQ--------KENEAESKLKNALEL 369 (592)
Q Consensus 352 Leq--------vE~ERegRL~kLeeL 369 (592)
|++ ...||..||.+|..+
T Consensus 114 L~~~v~~d~Pf~~~eR~~Rl~~L~~~ 139 (251)
T PF11932_consen 114 LEQFVELDLPFLLEERQERLARLRAM 139 (251)
T ss_pred HHHHHhcCCCCChHHHHHHHHHHHHh
Confidence 332 346777777777655
No 9
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=73.01 E-value=65 Score=38.60 Aligned_cols=45 Identities=27% Similarity=0.216 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 007697 287 GRAFAEEKRALKEKYEKELRDSRARELM---RTEEAAILEKELKRERAKA 333 (592)
Q Consensus 287 a~~~~eel~~L~ekye~eL~d~~a~EL~---~~~e~a~l~~efE~Er~kl 333 (592)
..-+.+++.+|++++-+-- .....++ ..+-...|++||+.|....
T Consensus 431 ~~~Le~elekLk~eilKAk--~s~~~~~~~~L~e~IeKLk~E~d~e~S~A 478 (762)
T PLN03229 431 VRELEGEVEKLKEQILKAK--ESSSKPSELALNEMIEKLKKEIDLEYTEA 478 (762)
T ss_pred CccHHHHHHHHHHHHHhcc--cccCCCCChHHHHHHHHHHHHHHHHHHHh
Confidence 3457788888888754210 0111222 3455667777777776665
No 10
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=68.85 E-value=2.3e+02 Score=34.21 Aligned_cols=19 Identities=26% Similarity=0.399 Sum_probs=14.2
Q ss_pred CCCCCCHHHHHHHHHHHHh
Q 007697 520 DQANDGIESVICRVESYLR 538 (592)
Q Consensus 520 ~~~GdDveSILARAE~~L~ 538 (592)
+.-|..++..+...+.||.
T Consensus 708 DL~G~~~eeA~~~l~~fl~ 726 (782)
T PRK00409 708 DLRGMRYEEALERLDKYLD 726 (782)
T ss_pred ECCCCCHHHHHHHHHHHHH
Confidence 4568888888888887743
No 11
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=67.77 E-value=2e+02 Score=31.79 Aligned_cols=35 Identities=20% Similarity=0.137 Sum_probs=20.4
Q ss_pred CchhHHHHHhcCchhHhhcCCCCHHHHHHHHHHHHH
Q 007697 452 KDSVLDLVLSSLPEETRYHGTETLLQLNQKFDALKG 487 (592)
Q Consensus 452 ~D~lV~aaLsSLp~~aae~GVpT~aqL~~RF~~Va~ 487 (592)
.|..+.-+|-+|-+ ..++||.+.++--.--+.|.+
T Consensus 311 ~d~aieD~i~~L~~-~~r~G~i~l~~yLr~VR~lsR 345 (365)
T KOG2391|consen 311 LDLAIEDAIYSLGK-SLRDGVIDLDQYLRHVRLLSR 345 (365)
T ss_pred hhhHHHHHHHHHHH-HHhcCeeeHHHHHHHHHHHHH
Confidence 35556666666754 557777777775444333333
No 12
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=67.17 E-value=1e+02 Score=31.87 Aligned_cols=85 Identities=24% Similarity=0.254 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 007697 347 KLRMELEQKENEAESKLKNALELAKAEIAASIAREKVAQIEKMAEANLHINALCMAFYARSEEARKSYFAHKLALGALAL 426 (592)
Q Consensus 347 kLknELeqvE~ERegRL~kLeeLakAEl~~~la~Erv~~lekLa~~n~rv~aL~~Al~Arsee~rks~~v~kLalAa~AL 426 (592)
++.++++.+++|. ..|..+... .+.|..||..+++.|-..+.-++.|+..+.....+..+..... .-+
T Consensus 19 ~i~~e~~~~e~ee-~~L~e~~kE-----~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i------~r~ 86 (230)
T PF10146_consen 19 EILQEVESLENEE-KCLEEYRKE-----MEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKI------QRL 86 (230)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHH
Confidence 3444445455444 444444433 3677888888888888888899999888876544433322111 112
Q ss_pred HHHHhcCCChHHHHHHHHhh
Q 007697 427 EDALSRGLPIQKEIDTLYTY 446 (592)
Q Consensus 427 ~~Al~~g~Pf~~EL~aLk~l 446 (592)
..- -.|+.++++.++.-
T Consensus 87 ~ee---y~~Lk~~in~~R~e 103 (230)
T PF10146_consen 87 YEE---YKPLKDEINELRKE 103 (230)
T ss_pred HHH---HHHHHHHHHHHHHH
Confidence 111 24677777777665
No 13
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=64.95 E-value=1.6e+02 Score=29.70 Aligned_cols=25 Identities=32% Similarity=0.461 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 007697 286 DGRAFAEEKRALKEKYEKELRDSRA 310 (592)
Q Consensus 286 Da~~~~eel~~L~ekye~eL~d~~a 310 (592)
++.....+...+..+|+.+|.+.+.
T Consensus 95 ~Ae~~k~eAe~~~~~ye~~L~~Ar~ 119 (204)
T PRK09174 95 QAARLKQEADAAVAAYEQELAQARA 119 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555677777888888888888443
No 14
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=63.40 E-value=3.3e+02 Score=32.67 Aligned_cols=14 Identities=21% Similarity=0.214 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHH
Q 007697 416 AHKLALGALALEDA 429 (592)
Q Consensus 416 v~kLalAa~AL~~A 429 (592)
+..|-.+..++++.
T Consensus 589 ~e~L~~aL~amqdk 602 (697)
T PF09726_consen 589 TEVLMSALSAMQDK 602 (697)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444455555554
No 15
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=63.35 E-value=2.8e+02 Score=31.93 Aligned_cols=22 Identities=23% Similarity=0.370 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 007697 340 LQEKMEEKLRMELEQKENEAES 361 (592)
Q Consensus 340 ~~e~~eekLknELeqvE~EReg 361 (592)
.++...+|.++|++++|.||+-
T Consensus 197 eE~iqaqrr~tE~erae~Eret 218 (630)
T KOG0742|consen 197 EEQIQAQRRKTEMERAEAERET 218 (630)
T ss_pred HHHHHHHHHHhHHHHHHHHHHH
Confidence 3556778888998887766554
No 16
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=61.23 E-value=2.8e+02 Score=33.47 Aligned_cols=20 Identities=25% Similarity=0.448 Sum_probs=15.2
Q ss_pred CCCCCCHHHHHHHHHHHHhc
Q 007697 520 DQANDGIESVICRVESYLRE 539 (592)
Q Consensus 520 ~~~GdDveSILARAE~~L~~ 539 (592)
+.-|..++..+...+.||..
T Consensus 697 dl~G~~~~eA~~~l~~~ld~ 716 (771)
T TIGR01069 697 DLRGQRSEEALDRLEKFLND 716 (771)
T ss_pred ECCCCCHHHHHHHHHHHHHH
Confidence 55778888888888887765
No 17
>PF14223 UBN2: gag-polypeptide of LTR copia-type
Probab=53.69 E-value=1.4e+02 Score=26.51 Aligned_cols=58 Identities=24% Similarity=0.299 Sum_probs=38.7
Q ss_pred cCCChHHHHHHHHhhhcC-------CCCchhHHHHHhcCchhH--------hhcCCC--CHHHHHHHHHHHHHHH
Q 007697 432 RGLPIQKEIDTLYTYLDG-------IEKDSVLDLVLSSLPEET--------RYHGTE--TLLQLNQKFDALKGTL 489 (592)
Q Consensus 432 ~g~Pf~~EL~aLk~la~g-------~~~D~lV~aaLsSLp~~a--------ae~GVp--T~aqL~~RF~~Va~~~ 489 (592)
.+.++..-+..++.+... +.+..+|..+|.+||+.. ....++ |.++|..++..-...+
T Consensus 39 ~~~sv~~y~~~~~~i~~~L~~~g~~i~d~~~v~~iL~~Lp~~y~~~~~~i~~~~~~~~~t~~el~~~L~~~E~~~ 113 (119)
T PF14223_consen 39 DGESVDEYISRLKEIVDELRAIGKPISDEDLVSKILRSLPPSYDTFVTAIRNSKDLPKMTLEELISRLLAEEMRL 113 (119)
T ss_pred ccccHHHHHHHHHHhhhhhhhcCCcccchhHHHHHHhcCCchhHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHHH
Confidence 355666555555444422 368899999999999854 244566 8889888887655443
No 18
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=53.63 E-value=2.6e+02 Score=28.57 Aligned_cols=10 Identities=30% Similarity=0.222 Sum_probs=4.8
Q ss_pred HHHHHHHhhh
Q 007697 438 KEIDTLYTYL 447 (592)
Q Consensus 438 ~EL~aLk~la 447 (592)
.|..-|..+|
T Consensus 189 kEn~ELtkIC 198 (207)
T PF05010_consen 189 KENEELTKIC 198 (207)
T ss_pred HHHHHHHHHH
Confidence 3444444554
No 19
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=53.01 E-value=5.8e+02 Score=32.29 Aligned_cols=26 Identities=27% Similarity=0.451 Sum_probs=16.0
Q ss_pred hHhhcCCCC--HHHHHHHHHHHHHHHhH
Q 007697 466 ETRYHGTET--LLQLNQKFDALKGTLRH 491 (592)
Q Consensus 466 ~aae~GVpT--~aqL~~RF~~Va~~~Rr 491 (592)
+...+||.+ ..+|..+...+...+..
T Consensus 762 eL~~~GvD~~~I~~l~~~i~~L~~~l~~ 789 (1201)
T PF12128_consen 762 ELAGKGVDPERIQQLKQEIEQLEKELKR 789 (1201)
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 345677766 55666666666666544
No 20
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=52.94 E-value=2.7e+02 Score=28.44 Aligned_cols=46 Identities=22% Similarity=0.228 Sum_probs=32.1
Q ss_pred HHHHHHHhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007697 355 KENEAESKL-------KNALELAKAEIAASIAREKVAQIEKMAEANLHINALCM 401 (592)
Q Consensus 355 vE~ERegRL-------~kLeeLakAEl~~~la~Erv~~lekLa~~n~rv~aL~~ 401 (592)
++.||..|. ++|.+.. ..+...+..||..+-..+.++...++.+..
T Consensus 137 ~~~Er~~R~erE~~i~krl~e~~-~~l~~~i~~Ek~~Re~~~~~l~~~le~~~~ 189 (247)
T PF06705_consen 137 FENERNEREEREENILKRLEEEE-NRLQEKIEKEKNTRESKLSELRSELEEVKR 189 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666664 4555442 457888888888888888888877777654
No 21
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=49.55 E-value=2.7e+02 Score=27.40 Aligned_cols=23 Identities=17% Similarity=0.358 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 007697 286 DGRAFAEEKRALKEKYEKELRDS 308 (592)
Q Consensus 286 Da~~~~eel~~L~ekye~eL~d~ 308 (592)
++....++...+.++|+..|.+.
T Consensus 73 ~Ae~~~~eA~~~~~eye~~L~~A 95 (181)
T PRK13454 73 AAEELKQKAVEAEKAYNKALADA 95 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777788888888887773
No 22
>COG4487 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.31 E-value=5e+02 Score=29.64 Aligned_cols=72 Identities=18% Similarity=0.222 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007697 326 LKRERAKAAATIKSLQEKMEEKLRMELEQKENEAESK--LKNALELAKAEIAASIAREKVAQIEKMAEANLHIN 397 (592)
Q Consensus 326 fE~Er~kla~~~K~~~e~~eekLknELeqvE~ERegR--L~kLeeLakAEl~~~la~Erv~~lekLa~~n~rv~ 397 (592)
-+++++-+...++.+......-|++.++-.+.+|++. +..|.--..-.+...+..+|.++.+++-+.|..+.
T Consensus 112 ~dke~~~le~~L~~~~~e~~~~lq~~~e~~~kkre~~k~~~~l~~~~ekK~e~sLe~eR~k~~~ql~~~~~~~e 185 (438)
T COG4487 112 KDKELELLEKELDELSKELQKQLQNTAEIIEKKRENNKNEERLKFENEKKLEESLELEREKFEEQLHEANLDLE 185 (438)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHH
Confidence 3556666666666666666666777775555555442 22221011223455689999999999987775544
No 23
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=45.99 E-value=4.4e+02 Score=31.05 Aligned_cols=83 Identities=23% Similarity=0.195 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 007697 348 LRMELEQKENEAESKLKNALELAKAEIAASIAREKVAQIEKMAEANLHINALCMAFYARSEEARKSYFAHKLALGALALE 427 (592)
Q Consensus 348 LknELeqvE~ERegRL~kLeeLakAEl~~~la~Erv~~lekLa~~n~rv~aL~~Al~Arsee~rks~~v~kLalAa~AL~ 427 (592)
+++++.+++.|.+..-....++. . +.-..+|...+ |-+....|..|...+++...-.. .|.--|...
T Consensus 354 l~~~~~q~~~e~~~~~~~~~~le-~---~~~l~~k~~~l--L~d~e~ni~kL~~~v~~s~~rl~------~L~~qWe~~- 420 (594)
T PF05667_consen 354 LKSSLKQLEEELEEKEAENEELE-E---ELKLKKKTVEL--LPDAEENIAKLQALVEASEQRLV------ELAQQWEKH- 420 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-H---HHHHHHHHHHH--hcCcHHHHHHHHHHHHHHHHHHH------HHHHHHHHH-
Confidence 44555555555554444444442 0 11112222222 33445566666666666422111 122222222
Q ss_pred HHHhcCCChHHHHHHHHhhhc
Q 007697 428 DALSRGLPIQKEIDTLYTYLD 448 (592)
Q Consensus 428 ~Al~~g~Pf~~EL~aLk~la~ 448 (592)
..|+..|+..|+....
T Consensus 421 -----R~pL~~e~r~lk~~~~ 436 (594)
T PF05667_consen 421 -----RAPLIEEYRRLKEKAS 436 (594)
T ss_pred -----HhHHHHHHHHHHHHHh
Confidence 4689999999987653
No 24
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=45.99 E-value=1.1e+02 Score=33.07 Aligned_cols=112 Identities=16% Similarity=0.137 Sum_probs=69.7
Q ss_pred CCchhHHHH--HhcCchhHh---------hcCCCCHHHHHHHHHHHHHHHh------HhhcCCCCCCCHHHHHHHHHhhh
Q 007697 451 EKDSVLDLV--LSSLPEETR---------YHGTETLLQLNQKFDALKGTLR------HFSLIPPGGGGILTHSLAHIASW 513 (592)
Q Consensus 451 ~~D~lV~aa--LsSLp~~aa---------e~GVpT~aqL~~RF~~Va~~~R------raSLvPe~gaGllshllS~l~S~ 513 (592)
+..+-|... |.+||..++ =.|.-+..+|+++.+++.+.-. -..+++.++. +.+...+...
T Consensus 84 D~~p~vAaqfgiqsIPtV~af~dGqpVdgF~G~qPesqlr~~ld~~~~~~~e~~~~~~~~~~~~e~~---~~a~~~~~~a 160 (304)
T COG3118 84 DAEPMVAAQFGVQSIPTVYAFKDGQPVDGFQGAQPESQLRQFLDKVLPAEEEEALAEAKELIEAEDF---GEAAPLLKQA 160 (304)
T ss_pred CcchhHHHHhCcCcCCeEEEeeCCcCccccCCCCcHHHHHHHHHHhcChHHHHHHHHhhhhhhccch---hhHHHHHHHH
Confidence 344544443 457775432 3688899999999998776621 1233444432 3332222222
Q ss_pred ccccccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHH
Q 007697 514 LKVKEADQANDGIESVICRVESYLREGKLAEAADALEEGVRGSQAEEIVFDWVRRARNRAIT 575 (592)
Q Consensus 514 L~fk~G~~~GdDveSILARAE~~L~~GDLd~AarELen~L~G~~Ar~la~DWl~eAR~RLEv 575 (592)
+-. .+++ .+.++.-++.+|..|+.+.|-..| ++|+.. .+ ..+|.. ++.+++.
T Consensus 161 l~~---~~~~--~~~~~~la~~~l~~g~~e~A~~iL-~~lP~~-~~--~~~~~~-l~a~i~l 212 (304)
T COG3118 161 LQA---APEN--SEAKLLLAECLLAAGDVEAAQAIL-AALPLQ-AQ--DKAAHG-LQAQIEL 212 (304)
T ss_pred HHh---Cccc--chHHHHHHHHHHHcCChHHHHHHH-HhCccc-ch--hhHHHH-HHHHHHH
Confidence 211 3333 678899999999999999999999 699877 33 355665 5555544
No 25
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=45.88 E-value=9.2e+02 Score=32.59 Aligned_cols=37 Identities=24% Similarity=0.234 Sum_probs=28.6
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007697 278 AEQRQAELDGRAFAEEKRALKEKYEKELRDSRARELM 314 (592)
Q Consensus 278 aek~Qae~Da~~~~eel~~L~ekye~eL~d~~a~EL~ 314 (592)
.++..++....-+.+++..+.+.+.+..+.++..|-.
T Consensus 957 ~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~ 993 (1930)
T KOG0161|consen 957 LEKNAAENKLKNLEEEINSLDENISKLSKEKKELEER 993 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555677788889999999999999888887665543
No 26
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.14 E-value=5.9e+02 Score=30.16 Aligned_cols=47 Identities=13% Similarity=0.074 Sum_probs=26.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007697 359 AESKLKNALELAKAEIAASIAREKVAQIEKMAEANLHINALCMAFYAR 406 (592)
Q Consensus 359 RegRL~kLeeLakAEl~~~la~Erv~~lekLa~~n~rv~aL~~Al~Ar 406 (592)
-..++.+|..++.+++-.....|| .+...|--++..++.|..+++..
T Consensus 635 L~~~~~~L~~~~~~~lp~l~~AEr-dFk~Elq~~~~~~~~L~~~iET~ 681 (741)
T KOG4460|consen 635 LMNRMKKLLHSFHSELPVLSDAER-DFKKELQLIPDQLRHLGNAIETV 681 (741)
T ss_pred HHHHHHHHHhcccccCCcchhHHH-HHHHHHHHhHHHHHHHHHHHHHH
Confidence 345666666666555444444444 33344455566677777766654
No 27
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=43.04 E-value=4.6e+02 Score=28.30 Aligned_cols=21 Identities=10% Similarity=-0.024 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhH
Q 007697 267 VVLDFLQAIHAAEQRQAELDG 287 (592)
Q Consensus 267 ~~ld~i~ai~aaek~Qae~Da 287 (592)
+|...+.-|+..-+.+|..+-
T Consensus 114 lm~~Qf~lvK~~aRl~ak~~W 134 (312)
T smart00787 114 LMDKQFQLVKTFARLEAKKMW 134 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344456666666666666654
No 28
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=42.83 E-value=7.4e+02 Score=30.63 Aligned_cols=20 Identities=25% Similarity=0.331 Sum_probs=9.9
Q ss_pred hhcCCCCCcchhhhhhcccc
Q 007697 217 ELSNSAESPASLLDAYHLRD 236 (592)
Q Consensus 217 ~~~~~~~~~~~l~~~y~l~~ 236 (592)
+||+..-.+-.|+--++|.|
T Consensus 220 aL~qS~Lpq~~LA~IW~LsD 239 (1118)
T KOG1029|consen 220 ALGQSGLPQNQLAHIWTLSD 239 (1118)
T ss_pred HHHhcCCchhhHhhheeeec
Confidence 44444444455555555544
No 29
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=42.11 E-value=5.5e+02 Score=28.90 Aligned_cols=23 Identities=13% Similarity=0.192 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 007697 286 DGRAFAEEKRALKEKYEKELRDS 308 (592)
Q Consensus 286 Da~~~~eel~~L~ekye~eL~d~ 308 (592)
++....+++..++++|++.|.+.
T Consensus 43 eAe~a~~ea~~~~~~~e~~L~~A 65 (445)
T PRK13428 43 ESATAADRLAEADQAHTKAVEDA 65 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556788888999999888873
No 30
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=40.56 E-value=8.4e+02 Score=30.62 Aligned_cols=36 Identities=22% Similarity=0.280 Sum_probs=25.2
Q ss_pred ccccccccccCCCCCCCCCCCCCCCCCCCCCcchhhhHHH
Q 007697 29 ARKEYSTASQKNVSPKPGPTGKPPESGSNFSPIIFGATVV 68 (592)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~g~~~~ 68 (592)
.||+|.|-..++.+=+|-=...|. .|.|++|-.+++
T Consensus 736 ~Rk~~rtrt~~~n~~npvy~eepf----vF~KVvLpeLA~ 771 (1189)
T KOG1265|consen 736 IRKEFRTRTVQGNSFNPVYEEEPF----VFRKVVLPELAS 771 (1189)
T ss_pred hhhhhhhccccCCCCCcccccCCc----ccceecccchhh
Confidence 356788877777777777666664 578887766544
No 31
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=39.13 E-value=8.4e+02 Score=30.20 Aligned_cols=16 Identities=19% Similarity=0.146 Sum_probs=8.6
Q ss_pred HHHHHH-HHHhhhcccc
Q 007697 502 ILTHSL-AHIASWLKVK 517 (592)
Q Consensus 502 llshll-S~l~S~L~fk 517 (592)
|++|+- -||.-.+.+.
T Consensus 1172 WyaHFdGq~I~RQm~l~ 1188 (1259)
T KOG0163|consen 1172 WYAHFDGQWIARQMELH 1188 (1259)
T ss_pred EEEecCcHHHHhhheec
Confidence 344553 3566666664
No 32
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=38.66 E-value=1.2e+03 Score=31.71 Aligned_cols=8 Identities=25% Similarity=0.389 Sum_probs=3.6
Q ss_pred HHHHHHHh
Q 007697 438 KEIDTLYT 445 (592)
Q Consensus 438 ~EL~aLk~ 445 (592)
.|+..|+.
T Consensus 1160 ~e~~~l~~ 1167 (1930)
T KOG0161|consen 1160 AEVQKLRR 1167 (1930)
T ss_pred HHHHHHHH
Confidence 34444444
No 33
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=38.07 E-value=64 Score=25.05 Aligned_cols=37 Identities=24% Similarity=0.413 Sum_probs=29.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCChhhH
Q 007697 522 ANDGIESVICRVESYLREGKLAEAADALEEGVRGSQAE 559 (592)
Q Consensus 522 ~GdDveSILARAE~~L~~GDLd~AarELen~L~G~~Ar 559 (592)
..++.+..+..++.++..|+++.|...+ +.+.-..|.
T Consensus 21 ~p~~~~~~~~la~~~~~~g~~~~A~~~l-~~~~~~~~~ 57 (68)
T PF14559_consen 21 NPDNPEARLLLAQCYLKQGQYDEAEELL-ERLLKQDPD 57 (68)
T ss_dssp TTTSHHHHHHHHHHHHHTT-HHHHHHHH-HCCHGGGTT
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHHCcC
Confidence 3448899999999999999999999999 577666343
No 34
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=37.88 E-value=9.3e+02 Score=30.33 Aligned_cols=17 Identities=18% Similarity=-0.035 Sum_probs=9.3
Q ss_pred hhcCCCCHHHHHHHHHH
Q 007697 468 RYHGTETLLQLNQKFDA 484 (592)
Q Consensus 468 ae~GVpT~aqL~~RF~~ 484 (592)
+..-|+.+.+-+-.|+.
T Consensus 516 aqet~yDrdqTI~KfRe 532 (1243)
T KOG0971|consen 516 AQETVYDRDQTIKKFRE 532 (1243)
T ss_pred HHHHHHhHHHHHHHHHH
Confidence 34445556666666653
No 35
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=37.87 E-value=3.5e+02 Score=25.47 Aligned_cols=24 Identities=13% Similarity=0.281 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 007697 286 DGRAFAEEKRALKEKYEKELRDSR 309 (592)
Q Consensus 286 Da~~~~eel~~L~ekye~eL~d~~ 309 (592)
++..+.++...+.++|+..|.+.+
T Consensus 49 ~A~~~~~ea~~~~~e~e~~l~~Ar 72 (141)
T PRK08476 49 KVKTNSSDVSEIEHEIETILKNAR 72 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455567777888888888777743
No 36
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=37.60 E-value=9.3e+02 Score=30.27 Aligned_cols=20 Identities=30% Similarity=0.388 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 007697 371 KAEIAASIAREKVAQIEKMA 390 (592)
Q Consensus 371 kAEl~~~la~Erv~~lekLa 390 (592)
+.|++....+|-|..+.+|+
T Consensus 1122 ~rE~n~s~i~~~V~e~krL~ 1141 (1189)
T KOG1265|consen 1122 KRELNSSNIKEFVEERKRLA 1141 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45566666777777777776
No 37
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=36.86 E-value=7.1e+02 Score=28.71 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 007697 382 KVAQIEKMAEANLHINALCMAFYA 405 (592)
Q Consensus 382 rv~~lekLa~~n~rv~aL~~Al~A 405 (592)
+.+.=+++++++.+|..|-.-+++
T Consensus 430 ~~s~d~~I~dLqEQlrDlmf~le~ 453 (493)
T KOG0804|consen 430 LGSKDEKITDLQEQLRDLMFFLEA 453 (493)
T ss_pred HHHHHHHHHHHHHHHHhHheehhh
Confidence 344445556666666665444444
No 38
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=36.32 E-value=7.5e+02 Score=28.78 Aligned_cols=33 Identities=9% Similarity=0.027 Sum_probs=17.3
Q ss_pred CCccccccccCCCCcchhhhhhhhhccCCcccccC
Q 007697 117 QPHLQDKVELTPQDQTVAVKEKDAAENSNKSIESR 151 (592)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (592)
.||.. ++-+..+..+..+.++.+|+.-.+-...
T Consensus 365 mpHpl--~pvslppasv~mamnqmnhl~tianmaa 397 (641)
T KOG3915|consen 365 MPHPL--GPVSLPPASVEMAMNQMNHLQTIANMAA 397 (641)
T ss_pred ccCcC--CcccCCchhhHHHhhhhhhhhhhhhhhh
Confidence 34542 3334445555555577777765544433
No 39
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=36.28 E-value=1.1e+03 Score=30.67 Aligned_cols=8 Identities=25% Similarity=0.580 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 007697 270 DFLQAIHA 277 (592)
Q Consensus 270 d~i~ai~a 277 (592)
++.+|+..
T Consensus 1567 ~V~eaL~~ 1574 (1758)
T KOG0994|consen 1567 DVVEALEE 1574 (1758)
T ss_pred HHHHHHHH
Confidence 33333333
No 40
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=36.16 E-value=1e+02 Score=23.83 Aligned_cols=44 Identities=16% Similarity=0.209 Sum_probs=25.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHH
Q 007697 530 ICRVESYLREGKLAEAADALEEGVRGSQAEEIVFDWVRRARNRAIT 575 (592)
Q Consensus 530 LARAE~~L~~GDLd~AarELen~L~G~~Ar~la~DWl~eAR~RLEv 575 (592)
+.++..++..||++.|++.++..|.-. |. -..-|..-++.....
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~-~~~a~~~lg~~~~~~ 44 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQD-PD-NPEAWYLLGRILYQQ 44 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCS-TT-HHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHC-CC-CHHHHHHHHHHHHHc
Confidence 356777777777777777775444444 43 334444444444433
No 41
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=35.72 E-value=7.1e+02 Score=30.12 Aligned_cols=12 Identities=33% Similarity=0.509 Sum_probs=6.4
Q ss_pred hccccccccCCC
Q 007697 232 YHLRDKIDEGID 243 (592)
Q Consensus 232 y~l~~~~~~~~~ 243 (592)
+.|=|++...++
T Consensus 405 LvLlDE~g~GtD 416 (771)
T TIGR01069 405 LVLFDELGAGTD 416 (771)
T ss_pred EEEecCCCCCCC
Confidence 445555555555
No 42
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=34.58 E-value=9.9e+02 Score=29.70 Aligned_cols=9 Identities=22% Similarity=0.154 Sum_probs=4.7
Q ss_pred HHHHHHHHH
Q 007697 267 VVLDFLQAI 275 (592)
Q Consensus 267 ~~ld~i~ai 275 (592)
+=.|.|.+-
T Consensus 662 lD~d~i~~~ 670 (988)
T KOG2072|consen 662 LDADQIKAR 670 (988)
T ss_pred cCHHHHHHH
Confidence 445666553
No 43
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=33.92 E-value=57 Score=21.97 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH
Q 007697 528 SVICRVESYLREGKLAEAADALE 550 (592)
Q Consensus 528 SILARAE~~L~~GDLd~AarELe 550 (592)
..+..+..++..||++.|.+.++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45678899999999999999873
No 44
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.31 E-value=7.2e+02 Score=27.70 Aligned_cols=24 Identities=21% Similarity=0.207 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 007697 318 EAAILEKELKRERAKAAATIKSLQ 341 (592)
Q Consensus 318 e~a~l~~efE~Er~kla~~~K~~~ 341 (592)
....++.-.|+|+.++.+.+..+.
T Consensus 215 ~~eklR~r~eeeme~~~aeq~slk 238 (365)
T KOG2391|consen 215 VREKLRRRREEEMERLQAEQESLK 238 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666555555553
No 45
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=33.16 E-value=4e+02 Score=24.75 Aligned_cols=21 Identities=19% Similarity=0.257 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 007697 379 AREKVAQIEKMAEANLHINAL 399 (592)
Q Consensus 379 a~Erv~~lekLa~~n~rv~aL 399 (592)
..+|...-..+.+++.|+..|
T Consensus 97 ~~qk~~le~e~~~~~~r~~dL 117 (132)
T PF07926_consen 97 EEQKEQLEKELSELEQRIEDL 117 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444445554444
No 46
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=32.80 E-value=5.4e+02 Score=27.25 Aligned_cols=15 Identities=7% Similarity=0.022 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHH
Q 007697 388 KMAEANLHINALCMA 402 (592)
Q Consensus 388 kLa~~n~rv~aL~~A 402 (592)
+..++..+...|..-
T Consensus 192 ev~~L~~r~~ELe~~ 206 (290)
T COG4026 192 EVYDLKKRWDELEPG 206 (290)
T ss_pred HHHHHHHHHHHhccc
Confidence 444555565555443
No 47
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=32.64 E-value=1.1e+03 Score=29.42 Aligned_cols=19 Identities=11% Similarity=0.020 Sum_probs=11.1
Q ss_pred CchhHhhcCCCCHHHHHHH
Q 007697 463 LPEETRYHGTETLLQLNQK 481 (592)
Q Consensus 463 Lp~~aae~GVpT~aqL~~R 481 (592)
+-..-++-|-+..++|++-
T Consensus 1060 ~~~~KYDl~~wkyaeLRDt 1078 (1259)
T KOG0163|consen 1060 LGKQKYDLSKWKYAELRDT 1078 (1259)
T ss_pred hccCccccccccHHHHHHh
Confidence 3333456666777777664
No 48
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=32.15 E-value=6e+02 Score=26.39 Aligned_cols=21 Identities=14% Similarity=0.246 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 007697 287 GRAFAEEKRALKEKYEKELRD 307 (592)
Q Consensus 287 a~~~~eel~~L~ekye~eL~d 307 (592)
|....++-..+.++|+.++.+
T Consensus 48 Ae~~~~eA~~~~~e~e~~l~~ 68 (250)
T PRK14474 48 AEQRQQEAGQEAERYRQKQQS 68 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555566655554
No 49
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=32.01 E-value=8.7e+02 Score=28.26 Aligned_cols=47 Identities=26% Similarity=0.283 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHhcCCChH
Q 007697 389 MAEANLHINALCMAFYARSEEARKSYFAHKLA-LGALALEDALSRGLPIQ 437 (592)
Q Consensus 389 La~~n~rv~aL~~Al~Arsee~rks~~v~kLa-lAa~AL~~Al~~g~Pf~ 437 (592)
+.+++.++++|..|++.- .+...-+++++.. +++.-|+.|.. -.||.
T Consensus 185 v~~yr~ki~aL~~aIe~E-r~~m~EEAiqe~~dmsaeVlE~Aae-EVP~v 232 (508)
T PF00901_consen 185 VEEYRQKIDALKNAIEVE-REGMQEEAIQEIADMSAEVLEHAAE-EVPLV 232 (508)
T ss_pred HHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHhcccHHHHHHHhh-hCCcc
Confidence 458888999999998884 3344555565543 44455554433 34554
No 50
>KOG1854 consensus Mitochondrial inner membrane protein (mitofilin) [Cell wall/membrane/envelope biogenesis]
Probab=31.64 E-value=9.8e+02 Score=28.72 Aligned_cols=21 Identities=14% Similarity=0.101 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHhhHHHHH
Q 007697 392 ANLHINALCMAFYARSEEARK 412 (592)
Q Consensus 392 ~n~rv~aL~~Al~Arsee~rk 412 (592)
-+.+-++||.++.+.-...+.
T Consensus 466 e~r~a~q~w~ac~nlk~s~~~ 486 (657)
T KOG1854|consen 466 EARKAKQLWLACSNLKDSLNK 486 (657)
T ss_pred HhhhHHHHHHHHHHHHHhhhc
Confidence 344556677666665443333
No 51
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=31.50 E-value=1e+03 Score=28.83 Aligned_cols=99 Identities=14% Similarity=0.171 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHhhhcCCCCchh
Q 007697 376 ASIAREKVAQIEKMAEANLHINALCMAFYARSEEARKSYFAHKLALGALALEDALSRGLPIQKEIDTLYTYLDGIEKDSV 455 (592)
Q Consensus 376 ~~la~Erv~~lekLa~~n~rv~aL~~Al~Arsee~rks~~v~kLalAa~AL~~Al~~g~Pf~~EL~aLk~la~g~~~D~l 455 (592)
..+..||.++-.+|......|-.|.+-+...+.+.++-+.. ........|.-...-.+.|+... +.+
T Consensus 220 ~e~~~erlqye~klkstk~e~a~L~Eq~~eK~~e~~rl~~~--------lv~~~~~d~e~~~~rd~~lk~a~-----esl 286 (861)
T KOG1899|consen 220 GEVVQERLQYETKLKSTKGEMAPLREQRSEKNDEEMRLLRT--------LVQRLMADGEHKSLRDNTLKNAL-----ESL 286 (861)
T ss_pred HHHHHHHHHHHhhcccccchhhhHHHHHhhhhhHHHHHHHH--------HHHHHhhcccchhhHHHHHHHHH-----HHH
Confidence 34456666666666666666666655554444433332211 11111112343444444555433 222
Q ss_pred HHHHHhcCchhHhhcCCCCHHHHHHHHHHHHHHHhHhh
Q 007697 456 LDLVLSSLPEETRYHGTETLLQLNQKFDALKGTLRHFS 493 (592)
Q Consensus 456 V~aaLsSLp~~aae~GVpT~aqL~~RF~~Va~~~RraS 493 (592)
+. + .+-.++-|.+.-++.++|+.++..++-+-
T Consensus 287 m~----a--ne~kdr~ie~lr~~ln~y~k~~~iv~i~q 318 (861)
T KOG1899|consen 287 MR----A--NEQKDRFIESLRNYLNNYDKNAQIVRILQ 318 (861)
T ss_pred Hh----h--chhhhhHHHHHHHHhhhhhhhhhhhhhhc
Confidence 11 1 12235667777788999999988776443
No 52
>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=30.82 E-value=8.1e+02 Score=27.55 Aligned_cols=39 Identities=23% Similarity=0.275 Sum_probs=22.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007697 356 ENEAESKLKNALELAKAEIAASIAREKVAQIEKMAEANLHINAL 399 (592)
Q Consensus 356 E~ERegRL~kLeeLakAEl~~~la~Erv~~lekLa~~n~rv~aL 399 (592)
|+|-..|-.+|+.+...+..+. +.++.+|++.|....-+
T Consensus 269 eqEiqr~~~el~A~vR~paeAe-----~~r~~klaEAnk~~~~~ 307 (428)
T KOG2668|consen 269 EQEIQRRVEELNATVRTPAEAE-----VERETKLAEANKELYNK 307 (428)
T ss_pred HHHHHHHHHHHHHHhCChhHHH-----HHHHHHHHHHHHHHHHH
Confidence 5666666666666644332333 55677777766654333
No 53
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=30.61 E-value=6.3e+02 Score=26.22 Aligned_cols=46 Identities=20% Similarity=0.340 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 007697 323 EKELKRERAKAAATIKSLQEKMEEKLRMELEQKENEAESKLKNALEL 369 (592)
Q Consensus 323 ~~efE~Er~kla~~~K~~~e~~eekLknELeqvE~ERegRL~kLeeL 369 (592)
..+|..||..+...++.+.+.++. |-+.+.+.+.||+.+......+
T Consensus 41 ~~~L~~Er~~h~eeLrqI~~DIn~-lE~iIkqa~~er~~~~~~i~r~ 86 (230)
T PF10146_consen 41 MEELLQERMAHVEELRQINQDINT-LENIIKQAESERNKRQEKIQRL 86 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555444443 5555666677776666555433
No 54
>KOG1118 consensus Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=30.43 E-value=7.8e+02 Score=27.23 Aligned_cols=49 Identities=22% Similarity=0.215 Sum_probs=29.1
Q ss_pred ccccCCcHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 007697 259 GYLSKDGKVVLDFLQAIHAAEQRQAELDGRAFAEEKRALKEKYEKELRD 307 (592)
Q Consensus 259 ~~~~~~~k~~ld~i~ai~aaek~Qae~Da~~~~eel~~L~ekye~eL~d 307 (592)
|.-+.-|...+|.-++...-...|-+.|-.+-...|.-|+.--.++|++
T Consensus 100 g~dSs~g~tl~~~Gesm~~i~evk~sl~~~vkq~FldpL~~l~~~elK~ 148 (366)
T KOG1118|consen 100 GDDSSFGHTLIDAGESMREIGEVKDSLDDNVKQNFLDPLQNLQLKELKD 148 (366)
T ss_pred CCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHH
Confidence 5566678888888777655444455555555555555555543445554
No 55
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=30.39 E-value=9e+02 Score=27.93 Aligned_cols=89 Identities=10% Similarity=0.152 Sum_probs=53.3
Q ss_pred CCCCHHHHHHHHHHHHHHHhH-----hhcCCCCCCCHHHHHHHHHhhhccccccCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007697 471 GTETLLQLNQKFDALKGTLRH-----FSLIPPGGGGILTHSLAHIASWLKVKEADQANDGIESVICRVESYLREGKLAEA 545 (592)
Q Consensus 471 GVpT~aqL~~RF~~Va~~~Rr-----aSLvPe~gaGllshllS~l~S~L~fk~G~~~GdDveSILARAE~~L~~GDLd~A 545 (592)
|-.....+...+..+...+.. .-|+- . +.++-.+..+ .=.|| ..-..|..-+.+|+.+-+.+||..|
T Consensus 467 g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~-~-a~~lE~~Iqy---~nRfr---~~~~~V~~~f~~Ae~lF~~~~Y~~a 538 (569)
T PRK04778 467 KPINMEAVNRLLEEATEDVETLEEETEELVE-N-ATLTEQLIQY---ANRYR---SDNEEVAEALNEAERLFREYDYKAA 538 (569)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHH---HhccC---CCCHHHHHHHHHHHHHHHhCChHHH
Confidence 666666666455444444311 11111 1 2344444444 22232 2456789999999999999999777
Q ss_pred HHHHH----hcCCChhhHHHHHHHHHH
Q 007697 546 ADALE----EGVRGSQAEEIVFDWVRR 568 (592)
Q Consensus 546 arELe----n~L~G~~Ar~la~DWl~e 568 (592)
+..+. .-=||. -+.+...|.+.
T Consensus 539 l~~~~~alE~vePG~-~~ri~~~y~~~ 564 (569)
T PRK04778 539 LEIIATALEKVEPGV-TKRIEDSYEKE 564 (569)
T ss_pred HHHHHHHHHhhCCcH-HHHHHHHHHhc
Confidence 66552 224787 88888888753
No 56
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=29.44 E-value=5.4e+02 Score=25.07 Aligned_cols=18 Identities=22% Similarity=0.425 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHhHHH
Q 007697 348 LRMELEQKENEAESKLKN 365 (592)
Q Consensus 348 LknELeqvE~ERegRL~k 365 (592)
|+.+++.++++-...+.+
T Consensus 85 L~~eie~l~~~L~~ei~~ 102 (177)
T PF07798_consen 85 LQREIEKLRQELREEINK 102 (177)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333443333333333333
No 57
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=29.27 E-value=1.3e+03 Score=29.27 Aligned_cols=29 Identities=38% Similarity=0.674 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 007697 318 EAAILEKELKRERAKA-AATIKSLQEKMEE 346 (592)
Q Consensus 318 e~a~l~~efE~Er~kl-a~~~K~~~e~~ee 346 (592)
|-+.+++|+-+||+.- +..+.++.+++++
T Consensus 314 EmaTldKEmAEERaesLQ~eve~lkEr~de 343 (1243)
T KOG0971|consen 314 EMATLDKEMAEERAESLQQEVEALKERVDE 343 (1243)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666666666554 5555555555443
No 58
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.79 E-value=9.6e+02 Score=27.44 Aligned_cols=85 Identities=16% Similarity=0.209 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHhcCCC---hHHHHHHHHhhhcCCCCchhHHHHHhcCchhHhhcCCCCHHHHHHHHHHHHHHHhH-h
Q 007697 417 HKLALGALALEDALSRGLP---IQKEIDTLYTYLDGIEKDSVLDLVLSSLPEETRYHGTETLLQLNQKFDALKGTLRH-F 492 (592)
Q Consensus 417 ~kLalAa~AL~~Al~~g~P---f~~EL~aLk~la~g~~~D~lV~aaLsSLp~~aae~GVpT~aqL~~RF~~Va~~~Rr-a 492 (592)
+++..+..+|+.-+..|.. ..+=|+-++... +...-|+.+|++=+. ..-=.--++|-.-+..+..+-.+ .
T Consensus 317 ~AyksGs~alK~il~~~~s~ekVed~Ldev~et~---d~~~EV~~~la~~~~---~~~d~~de~lEkEL~~L~~D~~k~e 390 (439)
T KOG2911|consen 317 QAYKSGSEALKAILAQGGSTEKVEDVLDEVNETL---DRQEEVEDALASYNV---NNIDFEDEDLEKELEDLEADEKKNE 390 (439)
T ss_pred HHHHHhHHHHHHHHhccCChhhHHHHHHHHHHHH---hhHHHHHHHHhcCCC---CCCccchHHHHHHHHHHHhccccCC
Confidence 3345677788777764443 334455555554 345666766666443 12233467888889888877766 8
Q ss_pred hcCCCCCCCHHHHHHH
Q 007697 493 SLIPPGGGGILTHSLA 508 (592)
Q Consensus 493 SLvPe~gaGllshllS 508 (592)
.+++|. +....+++-
T Consensus 391 ~~~lp~-~~~sr~~~~ 405 (439)
T KOG2911|consen 391 DLVLPL-NSVSRDFLK 405 (439)
T ss_pred ccCCCC-CCchHHHhh
Confidence 888877 345555544
No 59
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=27.19 E-value=1.3e+03 Score=28.80 Aligned_cols=15 Identities=27% Similarity=0.222 Sum_probs=6.9
Q ss_pred hhhcCCCCCcchhhh
Q 007697 216 NELSNSAESPASLLD 230 (592)
Q Consensus 216 ~~~~~~~~~~~~l~~ 230 (592)
+.|......|-..-+
T Consensus 155 ~eLsAk~~eIf~~~~ 169 (1265)
T KOG0976|consen 155 DELSAKAHDIFMIGE 169 (1265)
T ss_pred HHHhhhhHHHHHHHH
Confidence 444444444444444
No 60
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=26.57 E-value=6e+02 Score=24.63 Aligned_cols=21 Identities=24% Similarity=0.189 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 007697 287 GRAFAEEKRALKEKYEKELRD 307 (592)
Q Consensus 287 a~~~~eel~~L~ekye~eL~d 307 (592)
+....++...+.++|+..|.+
T Consensus 65 Ae~~~~ea~~~~~e~e~~L~~ 85 (167)
T PRK08475 65 IQEKLKESKEKKEDALKKLEE 85 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555556666666666655
No 61
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=26.54 E-value=6.1e+02 Score=24.70 Aligned_cols=21 Identities=38% Similarity=0.651 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 007697 287 GRAFAEEKRALKEKYEKELRD 307 (592)
Q Consensus 287 a~~~~eel~~L~ekye~eL~d 307 (592)
+....++...+..+|+.+|.+
T Consensus 70 Ae~~~~eA~~~l~e~e~~L~~ 90 (184)
T PRK13455 70 ARALREEAQTLLASYERKQRE 90 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555556666666666665
No 62
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=26.11 E-value=7.2e+02 Score=25.39 Aligned_cols=17 Identities=29% Similarity=0.272 Sum_probs=13.0
Q ss_pred HHHHHHHHhcCCChHHH
Q 007697 423 ALALEDALSRGLPIQKE 439 (592)
Q Consensus 423 a~AL~~Al~~g~Pf~~E 439 (592)
+..|+.-+....||..+
T Consensus 111 ~~~L~~~v~~d~Pf~~~ 127 (251)
T PF11932_consen 111 IDELEQFVELDLPFLLE 127 (251)
T ss_pred HHHHHHHHhcCCCCChH
Confidence 46677777778899887
No 63
>PF09920 DUF2150: Uncharacterized protein conserved in archaea (DUF2150); InterPro: IPR014518 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=26.00 E-value=5.7e+02 Score=26.09 Aligned_cols=112 Identities=13% Similarity=0.137 Sum_probs=72.2
Q ss_pred hhHHHHHhcCchhHhhcCCCCHHHHHHHHHHHHHHHhHhhcCCCCCCCHHHHHHHHHhhhccc-----c---ccCC-CCC
Q 007697 454 SVLDLVLSSLPEETRYHGTETLLQLNQKFDALKGTLRHFSLIPPGGGGILTHSLAHIASWLKV-----K---EADQ-AND 524 (592)
Q Consensus 454 ~lV~aaLsSLp~~aae~GVpT~aqL~~RF~~Va~~~RraSLvPe~gaGllshllS~l~S~L~f-----k---~G~~-~Gd 524 (592)
.++-+++.-| .+.+.|-.|...=.+....|...+- +=+|.. ..-..-++-.++..|++ + .|.+ +..
T Consensus 42 Dv~lA~lKIi--~~~~~~~l~keeAl~~L~~v~eIVl--~ev~~~-~Ed~~~~i~~vQ~SL~~vf~Aae~yi~g~~~~~~ 116 (190)
T PF09920_consen 42 DVILACLKII--AAYQNGELSKEEALEELEEVREIVL--SEVDFD-DEDKDMMIDSVQTSLVVVFAAAEEYIAGGYDEEA 116 (190)
T ss_pred HHHHHHHHHH--HHHHcCCCCHHHHHHHHHHHHHHHh--cCCCCC-chHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcC
Confidence 3344444444 3568888888888888888877762 234433 23444444444443332 2 3555 488
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhcC-----CChh---------hHHHHHHHHHHHHH
Q 007697 525 GIESVICRVESYLREGKLAEAADALEEGV-----RGSQ---------AEEIVFDWVRRARN 571 (592)
Q Consensus 525 DveSILARAE~~L~~GDLd~AarELen~L-----~G~~---------Ar~la~DWl~eAR~ 571 (592)
+++..+..|..+-+.|||+.|+..+. +. .|.+ +-.+..+|+...-.
T Consensus 117 ~i~~lvk~A~~aE~~edle~Al~~~a-~~GA~Vi~G~~l~~~~~~d~~~glvaEWldGiDs 176 (190)
T PF09920_consen 117 DIEELVKAAVEAEAEEDLEAALGYAA-QIGARVIDGESLPEKYVEDLEYGLVAEWLDGIDS 176 (190)
T ss_pred CHHHHHHHHHHHhhccCHHHHHHHHH-HhCceeeCCCcCCHhhcCCCCchHHHHHHHHHHH
Confidence 99999999999999999999999983 32 1211 34677889876543
No 64
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=25.99 E-value=5.8e+02 Score=24.27 Aligned_cols=21 Identities=24% Similarity=0.458 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 007697 287 GRAFAEEKRALKEKYEKELRD 307 (592)
Q Consensus 287 a~~~~eel~~L~ekye~eL~d 307 (592)
+.-..++...+.++|+..|.+
T Consensus 65 Ae~~~~ea~~~~~e~e~~L~~ 85 (156)
T CHL00118 65 ASEILAKANELTKQYEQELSK 85 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555555556666665555
No 65
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=25.00 E-value=1.2e+03 Score=27.66 Aligned_cols=35 Identities=17% Similarity=0.242 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhHHH
Q 007697 376 ASIAREKVAQIEKMA---EANLHINALCMAFYARSEEA 410 (592)
Q Consensus 376 ~~la~Erv~~lekLa---~~n~rv~aL~~Al~Arsee~ 410 (592)
+.+.++|+..-..++ +++.++..|..+|...+.+.
T Consensus 146 e~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~ 183 (617)
T PF15070_consen 146 EQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNEN 183 (617)
T ss_pred hhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444444444444 77788888888888876554
No 66
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=24.82 E-value=1e+03 Score=26.78 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 007697 313 LMRTEEAAILEKELKRERAKAAATI 337 (592)
Q Consensus 313 L~~~~e~a~l~~efE~Er~kla~~~ 337 (592)
..+..+-..+...||+||..+.+.+
T Consensus 131 aqdaaeGDDlt~~LEKEReqL~QQi 155 (561)
T KOG1103|consen 131 AQDAAEGDDLTAHLEKEREQLQQQI 155 (561)
T ss_pred hhhhhccchHHHHHHHHHHHHHHHH
Confidence 3355666778889999999987775
No 67
>TIGR02284 conserved hypothetical protein. Members of this protein family are found mostly in the Proteobacteria, although one member is found in the the marine planctomycete Pirellula sp. strain 1. The function is unknown.
Probab=24.38 E-value=4.4e+02 Score=24.84 Aligned_cols=23 Identities=13% Similarity=0.221 Sum_probs=15.0
Q ss_pred HHHHHHhHhhcCCCCCCCHHHHH
Q 007697 484 ALKGTLRHFSLIPPGGGGILTHS 506 (592)
Q Consensus 484 ~Va~~~RraSLvPe~gaGllshl 506 (592)
.+...++..---|++++++.+-+
T Consensus 48 eL~~~v~~lGg~p~~~gs~~g~l 70 (139)
T TIGR02284 48 ELQQVVASLGGKPEDHGSMVGSL 70 (139)
T ss_pred HHHHHHHHhCCCCCCCCcHHHHH
Confidence 44555566666888878877643
No 68
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=23.35 E-value=6.8e+02 Score=24.16 Aligned_cols=21 Identities=29% Similarity=0.393 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 007697 287 GRAFAEEKRALKEKYEKELRD 307 (592)
Q Consensus 287 a~~~~eel~~L~ekye~eL~d 307 (592)
+....++...+..+|+..|.+
T Consensus 59 Ae~~~~eA~~~~~e~e~~l~~ 79 (173)
T PRK13460 59 ASELRLEAEALLKDYEARLNS 79 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555566666666666665
No 69
>KOG4466 consensus Component of histone deacetylase complex (breast carcinoma metastasis suppressor 1 protein in human) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=22.46 E-value=1e+03 Score=25.85 Aligned_cols=49 Identities=22% Similarity=0.255 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007697 287 GRAFAEEKRALKEKYEKELRDSRARELMRTEEAAILEKELKRERAKAAATIK 338 (592)
Q Consensus 287 a~~~~eel~~L~ekye~eL~d~~a~EL~~~~e~a~l~~efE~Er~kla~~~K 338 (592)
+.-|-+.+++|.+++..+++- .++-........+.+|+.|+.+..+.+.
T Consensus 59 ~~eYl~~~~~L~~~~kerl~~---aely~e~~~e~v~~eYe~E~~aAk~e~E 107 (291)
T KOG4466|consen 59 APEYLKRVKKLDESRKERLRV---AELYREYCVERVEREYECEIKAAKKEYE 107 (291)
T ss_pred cHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666667777666555443 1222222334455666666666655554
No 70
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=22.37 E-value=6.4e+02 Score=23.50 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 007697 286 DGRAFAEEKRALKEKYEKELRD 307 (592)
Q Consensus 286 Da~~~~eel~~L~ekye~eL~d 307 (592)
++....++...+.++|+..|.+
T Consensus 46 ~a~~~~~~a~~~~~e~~~~l~~ 67 (156)
T PRK05759 46 AAERAKKELELAQAKYEAQLAE 67 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666666666655
No 71
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=22.17 E-value=7.5e+02 Score=24.19 Aligned_cols=21 Identities=14% Similarity=0.292 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 007697 287 GRAFAEEKRALKEKYEKELRD 307 (592)
Q Consensus 287 a~~~~eel~~L~ekye~eL~d 307 (592)
|.-..++...|.++|+..|++
T Consensus 47 Ae~~r~eA~~l~~e~e~~L~~ 67 (154)
T PRK06568 47 AEKLKEDAALLFEQTNAQIKK 67 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555667777788888877776
No 72
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=22.01 E-value=1.4e+03 Score=27.81 Aligned_cols=41 Identities=20% Similarity=0.368 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Q 007697 293 EKRALKEKYEKELRDSRARELM-----RTEEAAILEKELKRERAKA 333 (592)
Q Consensus 293 el~~L~ekye~eL~d~~a~EL~-----~~~e~a~l~~efE~Er~kl 333 (592)
.+.-|.++|+..+.+--.-..+ +..+...+...|+.|+.-+
T Consensus 792 klaiLaeqye~si~~m~~~q~lklde~qe~E~q~l~~ql~qEle~l 837 (948)
T KOG0577|consen 792 KLAILAEQYEQSINEMLQSQALKLDEAQEAECQVLREQLEQELELL 837 (948)
T ss_pred HHHHHHHHhhhhHHHHhhccceechHHHHHHHHHHHHHHHHHHHHH
Confidence 3455778888776652111111 2334455666666666666
No 73
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=21.77 E-value=1.1e+02 Score=22.50 Aligned_cols=27 Identities=22% Similarity=0.320 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 007697 527 ESVICRVESYLREGKLAEAADALEEGV 553 (592)
Q Consensus 527 eSILARAE~~L~~GDLd~AarELen~L 553 (592)
+..+..++.+...|+++.|.+.++..|
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l 28 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRAL 28 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456788999999999999999995333
No 74
>PF07956 DUF1690: Protein of Unknown function (DUF1690) ; InterPro: IPR012471 Family of uncharacterised fungal proteins.
Probab=21.62 E-value=7.3e+02 Score=23.89 Aligned_cols=15 Identities=20% Similarity=0.574 Sum_probs=11.5
Q ss_pred CCChH--HHHHHHHhhh
Q 007697 433 GLPIQ--KEIDTLYTYL 447 (592)
Q Consensus 433 g~Pf~--~EL~aLk~la 447 (592)
|+|+. .|+++++++.
T Consensus 125 ~rPLnCw~EVe~FKk~V 141 (142)
T PF07956_consen 125 GRPLNCWEEVEAFKKEV 141 (142)
T ss_pred CCCCchHHHHHHHHHHh
Confidence 78886 7888887754
No 75
>PRK10780 periplasmic chaperone; Provisional
Probab=21.51 E-value=7.3e+02 Score=23.82 Aligned_cols=109 Identities=11% Similarity=0.083 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007697 272 LQAIHAAEQRQAELDGRAFAEEKRALKEKYEKELRDSRARELMRTEEAAILEKELKRERAKAAATIKSLQEKMEEKLRME 351 (592)
Q Consensus 272 i~ai~aaek~Qae~Da~~~~eel~~L~ekye~eL~d~~a~EL~~~~e~a~l~~efE~Er~kla~~~K~~~e~~eekLknE 351 (592)
|+.|..-+-.+.-.........|+..-..|..+|.. ...+|.+...++...-..+.+...++...|
T Consensus 26 Ig~Vd~q~il~~~p~~k~~~~~le~~~~~~q~el~~--------------~~~elq~~~~~~q~~~~~ms~~~~~~~~~e 91 (165)
T PRK10780 26 IAIVNMGSIFQQVPQRTGVSKQLENEFKGRASELQR--------------METDLQAKMQKLQRDGSTMKGSDRTKLEKD 91 (165)
T ss_pred eEEeeHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHhcccccCHHHHHHHHHH
Q ss_pred HHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007697 352 LEQKENEAESKLKNALE---LAKAEIAASIAREKVAQIEKMAEANL 394 (592)
Q Consensus 352 LeqvE~ERegRL~kLee---LakAEl~~~la~Erv~~lekLa~~n~ 394 (592)
|.+..++-......+++ ....|+...+...-...+++++..++
T Consensus 92 l~~~~~~~q~~~~~~qq~~~~~~~e~~~~i~~ki~~ai~~vak~~g 137 (165)
T PRK10780 92 VMAQRQTFSQKAQAFEQDRRRRSNEERNKILTRIQTAVKSVANKQG 137 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
No 76
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=21.40 E-value=6.6e+02 Score=23.25 Aligned_cols=12 Identities=33% Similarity=0.227 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHH
Q 007697 266 KVVLDFLQAIHA 277 (592)
Q Consensus 266 k~~ld~i~ai~a 277 (592)
|++|=.|+|...
T Consensus 8 ki~LAGLGa~a~ 19 (118)
T TIGR01837 8 KVWLAGIGALAR 19 (118)
T ss_pred HHHHHHHhHHHH
Confidence 567777777533
No 77
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=21.19 E-value=2.4e+02 Score=23.41 Aligned_cols=56 Identities=16% Similarity=0.047 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhcCCChhhH--HHHHHHHHHHHHHHHHHHHHHHH
Q 007697 526 IESVICRVESYLREGKLAEAADALEEGVRGSQAE--EIVFDWVRRARNRAITEQGLTFL 582 (592)
Q Consensus 526 veSILARAE~~L~~GDLd~AarELen~L~G~~Ar--~la~DWl~eAR~RLEveQAl~vL 582 (592)
.++.+..+..++..|+++.|...++..+... |. ....-|..-++......+--+.+
T Consensus 39 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~ 96 (119)
T TIGR02795 39 PNAHYWLGEAYYAQGKYADAAKAFLAVVKKY-PKSPKAPDALLKLGMSLQELGDKEKAK 96 (119)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHC-CCCCcccHHHHHHHHHHHHhCChHHHH
Confidence 5667778888999999999999885334333 33 23344777777776655433333
No 78
>PF11137 DUF2909: Protein of unknown function (DUF2909); InterPro: IPR021313 This is a family of proteins conserved in Proteobacteria of unknown function.
Probab=20.99 E-value=85 Score=26.55 Aligned_cols=30 Identities=20% Similarity=0.278 Sum_probs=18.8
Q ss_pred CCCCCcch---hh-hHHHHHHHHHHHhcCCCCCCc
Q 007697 55 GSNFSPII---FG-ATVVVGVGLIAYQNGDEEPKT 85 (592)
Q Consensus 55 ~~~~~k~~---~g-~~~~~~~~~~ay~~g~~~~~~ 85 (592)
+..++|.+ +| ++++....+.||++||| |+|
T Consensus 30 ~~rm~~~L~~RV~lS~~l~~lil~~~~~G~i-p~P 63 (63)
T PF11137_consen 30 SKRMVKALGRRVGLSALLFLLILIALYTGWI-PQP 63 (63)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCC
Confidence 34455553 33 34445556899999999 664
No 79
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=20.97 E-value=3.1e+02 Score=25.28 Aligned_cols=67 Identities=6% Similarity=-0.068 Sum_probs=42.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007697 521 QANDGIESVICRVESYLREGKLAEAADALEEGVRGSQAEEIVFDWVRRARNRAITEQGLTFLQSYATCL 589 (592)
Q Consensus 521 ~~GdDveSILARAE~~L~~GDLd~AarELen~L~G~~Ar~la~DWl~eAR~RLEveQAl~vL~a~Aa~~ 589 (592)
...++.+....++..+...|+++.|+..++..+.-. | .-..-|..-+.......+--+.+.++-.++
T Consensus 53 ~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p-~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al 119 (144)
T PRK15359 53 AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-A-SHPEPVYQTGVCLKMMGEPGLAREAFQTAI 119 (144)
T ss_pred cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-C-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 355677888888888888888888888875444333 2 223456666666665555555555554443
No 80
>PTZ00491 major vault protein; Provisional
Probab=20.96 E-value=1.7e+03 Score=27.77 Aligned_cols=7 Identities=14% Similarity=0.354 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 007697 381 EKVAQIE 387 (592)
Q Consensus 381 Erv~~le 387 (592)
+|.+.|.
T Consensus 777 ~k~~~la 783 (850)
T PTZ00491 777 AKAKELA 783 (850)
T ss_pred HHHHHHH
Confidence 3343333
No 81
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=20.09 E-value=2.9e+02 Score=27.15 Aligned_cols=70 Identities=11% Similarity=0.064 Sum_probs=54.8
Q ss_pred CCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 007697 520 DQA-NDGIESVICRVESYLREGKLAEAADALEEGVRGSQAEEIVFDWVRRARNRAITEQGLTFLQSYATCLSI 591 (592)
Q Consensus 520 ~~~-GdDveSILARAE~~L~~GDLd~AarELen~L~G~~Ar~la~DWl~eAR~RLEveQAl~vL~a~Aa~~SL 591 (592)
+++ .++++.|.+.+-.+...|+|+.|.+.. ..|-=- ......-|+.=+=.+-...+--+.|.+|..+..|
T Consensus 28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f-~~L~~~-Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L 98 (157)
T PRK15363 28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLF-QLLTIY-DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI 98 (157)
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHH-HHHHHh-CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 456 889999999999999999999999887 455444 4456778887776666667777788888877665
Done!