Query 007697
Match_columns 592
No_of_seqs 165 out of 250
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 08:14:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007697.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007697hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ghg_A Fibrinogen alpha chain; 69.8 43 0.0015 37.1 12.8 18 389-406 140-157 (562)
2 1f5n_A Interferon-induced guan 55.5 2.1E+02 0.0073 31.7 15.4 18 288-305 434-451 (592)
3 3vkg_A Dynein heavy chain, cyt 55.1 5.2E+02 0.018 34.7 24.0 19 388-406 2036-2054(3245)
4 3oja_B Anopheles plasmodium-re 52.5 1.7E+02 0.0059 31.1 13.7 13 290-302 461-473 (597)
5 3ol1_A Vimentin; structural ge 44.1 1.7E+02 0.0057 25.8 13.9 28 282-311 40-67 (119)
6 2pmr_A Uncharacterized protein 33.4 54 0.0018 28.0 4.9 35 527-571 40-74 (87)
7 2dba_A Smooth muscle cell asso 27.8 1.5E+02 0.0051 23.5 6.6 32 523-554 25-56 (148)
8 3mq9_A Bone marrow stromal ant 27.1 5.4E+02 0.018 26.6 18.0 16 292-307 373-388 (471)
9 3bee_A Putative YFRE protein; 25.3 65 0.0022 26.3 3.9 49 522-574 39-87 (93)
10 2fxo_A Myosin heavy chain, car 24.5 3.7E+02 0.013 23.8 17.3 20 288-307 16-35 (129)
11 2l7b_A Apolipoprotein E, APO-E 24.5 2.2E+02 0.0075 29.1 8.4 39 268-306 41-80 (307)
12 2kc7_A BFR218_protein; tetratr 22.4 82 0.0028 24.0 3.8 28 523-550 31-59 (99)
13 2dfs_A Myosin-5A; myosin-V, in 21.8 1.1E+03 0.036 28.1 17.5 7 291-297 959-965 (1080)
14 3iyk_A VP5; icosahedral virus; 21.4 8.5E+02 0.029 26.9 19.6 48 389-438 191-239 (526)
15 3mq9_A Bone marrow stromal ant 21.2 6.9E+02 0.024 25.7 16.0 49 318-367 405-456 (471)
16 3urz_A Uncharacterized protein 20.4 1.2E+02 0.0041 27.0 5.1 33 524-556 2-34 (208)
No 1
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=69.84 E-value=43 Score=37.09 Aligned_cols=18 Identities=6% Similarity=0.097 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 007697 389 MAEANLHINALCMAFYAR 406 (592)
Q Consensus 389 La~~n~rv~aL~~Al~Ar 406 (592)
|.++..+|+.|+++|+..
T Consensus 140 Ledq~~kIQRLEvDIdiq 157 (562)
T 3ghg_A 140 VRAQLVDMKRLEVDIDIK 157 (562)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345567788888887774
No 2
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=55.47 E-value=2.1e+02 Score=31.73 Aligned_cols=18 Identities=39% Similarity=0.589 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 007697 288 RAFAEEKRALKEKYEKEL 305 (592)
Q Consensus 288 ~~~~eel~~L~ekye~eL 305 (592)
..|.+.++.+.++|..+-
T Consensus 434 ~~~~~~~~~~~~~Y~~~~ 451 (592)
T 1f5n_A 434 RLFVQKLQDLKKKYYEEP 451 (592)
T ss_dssp HHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 357888888888887755
No 3
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=55.14 E-value=5.2e+02 Score=34.71 Aligned_cols=19 Identities=5% Similarity=0.027 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 007697 388 KMAEANLHINALCMAFYAR 406 (592)
Q Consensus 388 kLa~~n~rv~aL~~Al~Ar 406 (592)
+|.+++.+|+.|...+++.
T Consensus 2036 ~L~~le~~l~~L~~~~~~~ 2054 (3245)
T 3vkg_A 2036 TITALEKSIATYKEEYATL 2054 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445556666665555543
No 4
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=52.52 E-value=1.7e+02 Score=31.09 Aligned_cols=13 Identities=15% Similarity=0.166 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHH
Q 007697 290 FAEEKRALKEKYE 302 (592)
Q Consensus 290 ~~eel~~L~ekye 302 (592)
...+++.++++..
T Consensus 461 ~~~~i~~l~~~~~ 473 (597)
T 3oja_B 461 LRAEVQQLTNEQI 473 (597)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4456666665533
No 5
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=44.10 E-value=1.7e+02 Score=25.82 Aligned_cols=28 Identities=29% Similarity=0.426 Sum_probs=20.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007697 282 QAELDGRAFAEEKRALKEKYEKELRDSRAR 311 (592)
Q Consensus 282 Qae~Da~~~~eel~~L~ekye~eL~d~~a~ 311 (592)
++++|- ....+..++.||+.|+..+...
T Consensus 40 ~leldn--~~~~~edfk~KyE~E~~~r~~~ 67 (119)
T 3ol1_A 40 EVERDN--LAEDIMRLREKLQEEMLQREEA 67 (119)
T ss_dssp HHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH--HHHHHHHHHHhhHHHHHHHHHH
Confidence 444444 7889999999999988774443
No 6
>2pmr_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.32A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.8.11.1
Probab=33.42 E-value=54 Score=28.01 Aligned_cols=35 Identities=11% Similarity=0.061 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcCCChhhHHHHHHHHHHHHH
Q 007697 527 ESVICRVESYLREGKLAEAADALEEGVRGSQAEEIVFDWVRRARN 571 (592)
Q Consensus 527 eSILARAE~~L~~GDLd~AarELen~L~G~~Ar~la~DWl~eAR~ 571 (592)
.+-+..++++++.||+..|+..+. + +-.||..+|.
T Consensus 40 ~~Y~~Da~~fl~kGD~v~Ala~is-----Y-----a~GwLDAlR~ 74 (87)
T 2pmr_A 40 LNYRDDSVYYLEKGDHITSFGCIT-----Y-----AHGLLDSLRM 74 (87)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHH-----H-----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHH-----H-----HHHHHHHHHH
Confidence 356778999999999999999993 3 4478888664
No 7
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.78 E-value=1.5e+02 Score=23.54 Aligned_cols=32 Identities=13% Similarity=0.179 Sum_probs=21.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 007697 523 NDGIESVICRVESYLREGKLAEAADALEEGVR 554 (592)
Q Consensus 523 GdDveSILARAE~~L~~GDLd~AarELen~L~ 554 (592)
..+....+..+..++..|+++.|+..++..+.
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 56 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALG 56 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45666777777777777777777776644443
No 8
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=27.09 E-value=5.4e+02 Score=26.57 Aligned_cols=16 Identities=6% Similarity=0.069 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 007697 292 EEKRALKEKYEKELRD 307 (592)
Q Consensus 292 eel~~L~ekye~eL~d 307 (592)
+.++.++++.+..|..
T Consensus 373 eal~~~~~~i~~~l~~ 388 (471)
T 3mq9_A 373 EALKDAQTRITAARDG 388 (471)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3555555555555444
No 9
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=25.30 E-value=65 Score=26.34 Aligned_cols=49 Identities=6% Similarity=-0.203 Sum_probs=35.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHH
Q 007697 522 ANDGIESVICRVESYLREGKLAEAADALEEGVRGSQAEEIVFDWVRRARNRAI 574 (592)
Q Consensus 522 ~GdDveSILARAE~~L~~GDLd~AarELen~L~G~~Ar~la~DWl~eAR~RLE 574 (592)
+.+++.+.+-.+..+...||++.|+..|+..|.-. |. ..|....+..++
T Consensus 39 dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~-p~---~~~~~~i~~~I~ 87 (93)
T 3bee_A 39 EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN-DP---NLDRVTIIESIN 87 (93)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC-CT---TCCHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CC---CccHHHHHHHHH
Confidence 55678888888999999999999999996445444 33 456555555443
No 10
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=24.46 E-value=3.7e+02 Score=23.75 Aligned_cols=20 Identities=35% Similarity=0.310 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 007697 288 RAFAEEKRALKEKYEKELRD 307 (592)
Q Consensus 288 ~~~~eel~~L~ekye~eL~d 307 (592)
....+++..|++++++.-..
T Consensus 16 ~~~~eel~~lke~l~k~e~~ 35 (129)
T 2fxo_A 16 ASMKEEFTRLKEALEKSEAR 35 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34566677777776654333
No 11
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=24.45 E-value=2.2e+02 Score=29.11 Aligned_cols=39 Identities=36% Similarity=0.469 Sum_probs=18.0
Q ss_pred HHHHHHHHHH-HHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 007697 268 VLDFLQAIHA-AEQRQAELDGRAFAEEKRALKEKYEKELR 306 (592)
Q Consensus 268 ~ld~i~ai~a-aek~Qae~Da~~~~eel~~L~ekye~eL~ 306 (592)
|-|++..+.. |.+.+-.++.--+..++..+..+...+|.
T Consensus 41 fwdY~~~~~~~a~~~~eql~~s~l~kel~~l~~~~~~el~ 80 (307)
T 2l7b_A 41 FWDYLRWVQTLSEQVQEELLSSQVTQELRALMDETMKELK 80 (307)
T ss_dssp HHHHHHHTCCCSTHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455544433 33333333333355555555555444443
No 12
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=22.37 E-value=82 Score=23.95 Aligned_cols=28 Identities=14% Similarity=0.191 Sum_probs=20.4
Q ss_pred CCCHH-HHHHHHHHHHhcCCHHHHHHHHH
Q 007697 523 NDGIE-SVICRVESYLREGKLAEAADALE 550 (592)
Q Consensus 523 GdDve-SILARAE~~L~~GDLd~AarELe 550 (592)
.+++. ..+.++..+...|+++.|+..++
T Consensus 31 p~~~~~~~~~lg~~~~~~~~~~~A~~~~~ 59 (99)
T 2kc7_A 31 PVGKDEAYYLMGNAYRKLGDWQKALNNYQ 59 (99)
T ss_dssp SSTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34566 77777777778888888877774
No 13
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=21.81 E-value=1.1e+03 Score=28.13 Aligned_cols=7 Identities=29% Similarity=0.415 Sum_probs=2.9
Q ss_pred HHHHHHH
Q 007697 291 AEEKRAL 297 (592)
Q Consensus 291 ~eel~~L 297 (592)
.++..+|
T Consensus 959 ~~e~~~L 965 (1080)
T 2dfs_A 959 STETEKL 965 (1080)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3344444
No 14
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=21.41 E-value=8.5e+02 Score=26.90 Aligned_cols=48 Identities=23% Similarity=0.211 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHhcCCChHH
Q 007697 389 MAEANLHINALCMAFYARSEEARKSYFAHKLA-LGALALEDALSRGLPIQK 438 (592)
Q Consensus 389 La~~n~rv~aL~~Al~Arsee~rks~~v~kLa-lAa~AL~~Al~~g~Pf~~ 438 (592)
+.+++.++++|..|++.- .+...-+++++.. +++.-++.|.. -.||..
T Consensus 191 i~~yr~k~~aL~~aIe~E-r~~~~EEAIqe~~dmsaeI~E~Aae-EVP~vG 239 (526)
T 3iyk_A 191 VKEYRDKIDALKNAIEVE-RDGMQEEAIQEIAGMTADVLEAASE-EVPLIG 239 (526)
T ss_pred HHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHhcchHHHHHHHhh-hCCcch
Confidence 447888999999998884 3444445555543 44444544432 355543
No 15
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=21.23 E-value=6.9e+02 Score=25.74 Aligned_cols=49 Identities=18% Similarity=0.216 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 007697 318 EAAILEKELKRERAKAAAT---IKSLQEKMEEKLRMELEQKENEAESKLKNAL 367 (592)
Q Consensus 318 e~a~l~~efE~Er~kla~~---~K~~~e~~eekLknELeqvE~ERegRL~kLe 367 (592)
+....++.|-+-++..... .-++++-++.+....++ .-+|.++.+.+|+
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 456 (471)
T 3mq9_A 405 ELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQK-KVEELEGEITTLN 456 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 3344444444443333222 22455555555444333 3345555555554
No 16
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=20.38 E-value=1.2e+02 Score=27.01 Aligned_cols=33 Identities=9% Similarity=0.282 Sum_probs=27.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCh
Q 007697 524 DGIESVICRVESYLREGKLAEAADALEEGVRGS 556 (592)
Q Consensus 524 dDveSILARAE~~L~~GDLd~AarELen~L~G~ 556 (592)
.+++..+.++..++..|+++.|+..++..+.-.
T Consensus 2 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~ 34 (208)
T 3urz_A 2 QSVDEMLQKVSAAIEAGQNGQAVSYFRQTIALN 34 (208)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 578999999999999999999999995444433
Done!