Query 007697
Match_columns 592
No_of_seqs 165 out of 250
Neff 4.2
Searched_HMMs 13730
Date Mon Mar 25 08:14:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007697.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/007697hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2pmra1 a.8.11.1 (A:3-77) Unch 25.9 43 0.0031 26.1 4.9 34 527-570 36-69 (75)
2 d1sr2a_ a.24.10.4 (A:) Sensor- 20.7 39 0.0029 27.0 3.9 49 525-575 43-91 (116)
3 d2crba1 a.7.16.1 (A:8-90) Nucl 18.3 47 0.0034 26.4 3.6 20 531-550 13-32 (83)
4 d1elwa_ a.118.8.1 (A:) Hop {Hu 17.1 94 0.0069 23.7 5.4 34 523-556 68-101 (117)
5 d2ezla_ a.4.1.2 (A:) Ibeta sub 15.4 2.7E+02 0.019 22.2 8.5 30 469-499 62-94 (99)
6 d2e74g1 f.23.26.1 (G:9-35) Pet 13.4 49 0.0036 20.9 2.0 17 62-78 2-20 (27)
7 d2c2la1 a.118.8.1 (A:24-224) S 11.8 3.2E+02 0.023 21.2 7.8 81 473-553 2-99 (201)
8 d2fbna1 a.118.8.1 (A:22-174) P 11.3 1.7E+02 0.012 23.2 5.5 51 522-574 97-149 (153)
9 d2a0ba_ a.24.10.1 (A:) Aerobic 10.6 58 0.0042 25.5 2.2 31 525-556 34-64 (118)
10 d2cfua2 d.157.1.13 (A:20-524) 10.5 1.4E+02 0.01 29.7 5.6 46 525-571 429-479 (505)
No 1
>d2pmra1 a.8.11.1 (A:3-77) Uncharacterized protein MTH1690 {Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=25.90 E-value=43 Score=26.09 Aligned_cols=34 Identities=12% Similarity=0.085 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcCCChhhHHHHHHHHHHHH
Q 007697 527 ESVICRVESYLREGKLAEAADALEEGVRGSQAEEIVFDWVRRAR 570 (592)
Q Consensus 527 eSILARAE~~L~~GDLd~AarELen~L~G~~Ar~la~DWl~eAR 570 (592)
++-++-+++++..||+..|...+ | + +..||...|
T Consensus 36 ~~Y~~Da~~f~~~gd~v~A~~~i-~----Y-----A~g~lDAlr 69 (75)
T d2pmra1 36 LNYRDDSVYYLEKGDHITSFGCI-T----Y-----AHGLLDSLR 69 (75)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHH-H----H-----HHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChhHHHHHH-H----H-----HHHHHHHHH
Confidence 35677889999999999999999 3 3 345676654
No 2
>d1sr2a_ a.24.10.4 (A:) Sensor-like histidine kinase YojN, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=20.66 E-value=39 Score=26.96 Aligned_cols=49 Identities=8% Similarity=0.008 Sum_probs=42.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHH
Q 007697 525 GIESVICRVESYLREGKLAEAADALEEGVRGSQAEEIVFDWVRRARNRAIT 575 (592)
Q Consensus 525 DveSILARAE~~L~~GDLd~AarELen~L~G~~Ar~la~DWl~eAR~RLEv 575 (592)
++..-+...+.++..+|++...+.. -.|+|. +..+....+.+.=..||.
T Consensus 43 ~~p~~l~~L~~a~~~~D~~~l~~~a-H~LKGs-~~~~Ga~~l~~~~~~lE~ 91 (116)
T d1sr2a_ 43 TVPDDVKRLYTEAATSDFAALAQTA-HRLKGV-FAMLNLVPGKQLCETLEH 91 (116)
T ss_dssp THHHHHHHHHHHHHHTCHHHHHHHH-HHHHHH-HHHHTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHCcCHHHHHHHH-HHHHHH-HHHcCchHHHHHHHHHHH
Confidence 5667799999999999999999999 899999 888888888777777664
No 3
>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=18.27 E-value=47 Score=26.40 Aligned_cols=20 Identities=30% Similarity=0.385 Sum_probs=17.6
Q ss_pred HHHHHHHhcCCHHHHHHHHH
Q 007697 531 CRVESYLREGKLAEAADALE 550 (592)
Q Consensus 531 ARAE~~L~~GDLd~AarELe 550 (592)
.|||.+|..|.+|.|+.+..
T Consensus 13 RrAer~l~~~rydeAIech~ 32 (83)
T d2crba1 13 RRADRLLAAGKYEEAISCHR 32 (83)
T ss_dssp HHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHH
Confidence 47899999999999998873
No 4
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.12 E-value=94 Score=23.65 Aligned_cols=34 Identities=18% Similarity=0.149 Sum_probs=28.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCh
Q 007697 523 NDGIESVICRVESYLREGKLAEAADALEEGVRGS 556 (592)
Q Consensus 523 GdDveSILARAE~~L~~GDLd~AarELen~L~G~ 556 (592)
.+++.+.+.++..++..|+++.|+..++..+.--
T Consensus 68 p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~ 101 (117)
T d1elwa_ 68 PDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHE 101 (117)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cchhhHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 4578899999999999999999999997666544
No 5
>d2ezla_ a.4.1.2 (A:) Ibeta subdomain of the mu end DNA-binding domain of phage mu transposase {Bacteriophage mu [TaxId: 10677]}
Probab=15.35 E-value=2.7e+02 Score=22.25 Aligned_cols=30 Identities=13% Similarity=0.080 Sum_probs=21.0
Q ss_pred hcCCCCHHHHHHHHHHHHHHH---hHhhcCCCCC
Q 007697 469 YHGTETLLQLNQKFDALKGTL---RHFSLIPPGG 499 (592)
Q Consensus 469 e~GVpT~aqL~~RF~~Va~~~---RraSLvPe~g 499 (592)
+.| .|...|.++|..|..-- .-++|+|..|
T Consensus 62 ~~~-vs~~TL~nW~~~V~g~~r~DWLpaLl~~~g 94 (99)
T d2ezla_ 62 HYQ-VSASTLRDKYYQVQKFAKPDWAAALVDGRG 94 (99)
T ss_dssp HSS-SCHHHHHHHHHHHHTSCSTTHHHHTTSCSC
T ss_pred HhC-CCHHHHHHHHHHHCCCCHHHHHHHHccCcc
Confidence 344 47888999999888754 3366777654
No 6
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=13.39 E-value=49 Score=20.89 Aligned_cols=17 Identities=29% Similarity=0.493 Sum_probs=10.9
Q ss_pred hhhhHH--HHHHHHHHHhc
Q 007697 62 IFGATV--VVGVGLIAYQN 78 (592)
Q Consensus 62 ~~g~~~--~~~~~~~ay~~ 78 (592)
++|-++ ++|-+.||||.
T Consensus 2 vlgli~~tl~glf~aayqq 20 (27)
T d2e74g1 2 VLGLVFATLGGLFYAAYQQ 20 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHHHHH
Confidence 355444 36777899984
No 7
>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=11.79 E-value=3.2e+02 Score=21.23 Aligned_cols=81 Identities=9% Similarity=0.031 Sum_probs=0.0
Q ss_pred CCHHHHHHH---------HHHHHHHHhHhhcCCCCCCCHHHHHHHHHhhhccccc--------cCCCCCCHHHHHHHHHH
Q 007697 473 ETLLQLNQK---------FDALKGTLRHFSLIPPGGGGILTHSLAHIASWLKVKE--------ADQANDGIESVICRVES 535 (592)
Q Consensus 473 pT~aqL~~R---------F~~Va~~~RraSLvPe~gaGllshllS~l~S~L~fk~--------G~~~GdDveSILARAE~ 535 (592)
|+..+|.+. |........++--+-|+.+-++.++.......=.+.. -....+.+.+.+.++..
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~ 81 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHH
Q ss_pred HHhcCCHHHHHHHHHhcC
Q 007697 536 YLREGKLAEAADALEEGV 553 (592)
Q Consensus 536 ~L~~GDLd~AarELen~L 553 (592)
++..|+++.|+..++..|
T Consensus 82 ~~~l~~~~~A~~~~~~al 99 (201)
T d2c2la1 82 QLEMESYDEAIANLQRAY 99 (201)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHH
No 8
>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}
Probab=11.27 E-value=1.7e+02 Score=23.20 Aligned_cols=51 Identities=14% Similarity=0.065 Sum_probs=35.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCChhh--HHHHHHHHHHHHHHHH
Q 007697 522 ANDGIESVICRVESYLREGKLAEAADALEEGVRGSQA--EEIVFDWVRRARNRAI 574 (592)
Q Consensus 522 ~GdDveSILARAE~~L~~GDLd~AarELen~L~G~~A--r~la~DWl~eAR~RLE 574 (592)
..+++.+...++..+...|+++.|+..++..|.-. | ..+ ..=+..++.+|.
T Consensus 97 ~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~-P~n~~~-~~~l~~~~~kl~ 149 (153)
T d2fbna1 97 DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDI-RNSYELCVNKLK 149 (153)
T ss_dssp STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHH-HHHHHHHHHHHH
T ss_pred cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHH-HHHHHHHHHHHH
Confidence 45578999999999999999999999996555433 3 222 223455555543
No 9
>d2a0ba_ a.24.10.1 (A:) Aerobic respiration control sensor protein, ArcB {Escherichia coli [TaxId: 562]}
Probab=10.56 E-value=58 Score=25.50 Aligned_cols=31 Identities=13% Similarity=0.170 Sum_probs=22.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCh
Q 007697 525 GIESVICRVESYLREGKLAEAADALEEGVRGS 556 (592)
Q Consensus 525 DveSILARAE~~L~~GDLd~AarELen~L~G~ 556 (592)
++...+...+.++..+|++.+.+.. -.|+|.
T Consensus 34 ~~~~~l~~l~~a~~~~d~~~~~~~a-H~LKgs 64 (118)
T d2a0ba_ 34 MMPGYVSVLESNLTAQDKKGIVEEG-HKIKGA 64 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHH
T ss_pred HhHHHHHHHHHHHHCCCHHHHHHHH-HHHHHH
Confidence 3456677777788888877777777 677776
No 10
>d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=10.49 E-value=1.4e+02 Score=29.73 Aligned_cols=46 Identities=13% Similarity=0.206 Sum_probs=35.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhcC---C--ChhhHHHHHHHHHHHHH
Q 007697 525 GIESVICRVESYLREGKLAEAADALEEGV---R--GSQAEEIVFDWVRRARN 571 (592)
Q Consensus 525 DveSILARAE~~L~~GDLd~AarELen~L---~--G~~Ar~la~DWl~eAR~ 571 (592)
+.+.||.+|+.++..||+--|+.-+ +-| . -..+|.+.+|.+.+.--
T Consensus 429 G~~~~~~~a~~~~~~g~~~wa~~l~-~~~~~a~p~~~~ar~l~a~~~~~l~~ 479 (505)
T d2cfua2 429 GAERLLEQARASYARGEYRWVVEVV-NRLVFAEPDNRAARELQADALEQLGY 479 (505)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHH-HHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 6999999999999999999999988 455 1 11267777777665443
Done!