Query 007698
Match_columns 592
No_of_seqs 308 out of 2091
Neff 5.8
Searched_HMMs 46136
Date Thu Mar 28 14:08:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007698.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007698hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0020 Endoplasmic reticulum 100.0 5E-137 1E-141 1078.5 28.5 504 78-591 70-586 (785)
2 COG0326 HtpG Molecular chapero 100.0 6E-133 1E-137 1094.4 38.6 472 79-591 3-477 (623)
3 PTZ00130 heat shock protein 90 100.0 2E-131 4E-136 1115.0 43.3 504 78-591 63-603 (814)
4 PTZ00272 heat shock protein 83 100.0 2E-130 5E-135 1104.8 43.4 498 81-591 3-514 (701)
5 KOG0019 Molecular chaperone (H 100.0 5E-128 1E-132 1037.1 32.4 459 78-591 32-492 (656)
6 PRK05218 heat shock protein 90 100.0 1E-113 3E-118 966.4 42.8 462 80-590 3-466 (613)
7 PRK14083 HSP90 family protein; 100.0 8E-106 2E-110 896.9 35.8 430 82-591 2-438 (601)
8 PF00183 HSP90: Hsp90 protein; 100.0 1.3E-90 2.7E-95 766.8 19.0 320 268-591 1-341 (531)
9 COG0323 MutL DNA mismatch repa 99.8 1.9E-20 4.1E-25 212.5 14.3 293 89-476 4-334 (638)
10 TIGR00585 mutl DNA mismatch re 99.7 6.5E-17 1.4E-21 169.6 18.8 159 98-292 17-187 (312)
11 PRK00095 mutL DNA mismatch rep 99.7 7.7E-17 1.7E-21 183.2 16.4 256 98-446 17-298 (617)
12 PF13589 HATPase_c_3: Histidin 99.7 3.3E-17 7.1E-22 152.2 8.7 103 101-232 1-105 (137)
13 COG1389 DNA topoisomerase VI, 99.4 6.7E-13 1.4E-17 141.9 11.5 138 106-266 39-185 (538)
14 KOG1979 DNA mismatch repair pr 99.3 7.1E-12 1.5E-16 136.9 10.4 165 89-294 8-194 (694)
15 PRK04184 DNA topoisomerase VI 99.3 4.9E-11 1.1E-15 132.8 14.4 157 105-289 38-204 (535)
16 PRK14868 DNA topoisomerase VI 99.2 9.5E-11 2.1E-15 133.4 12.9 155 106-289 49-210 (795)
17 TIGR01052 top6b DNA topoisomer 99.2 1.8E-10 3.9E-15 127.1 13.2 154 106-289 31-195 (488)
18 PRK14867 DNA topoisomerase VI 99.0 5.6E-09 1.2E-13 118.7 15.8 154 106-292 39-205 (659)
19 TIGR01055 parE_Gneg DNA topois 98.8 1.9E-08 4.2E-13 114.9 10.8 155 104-292 31-199 (625)
20 KOG1978 DNA mismatch repair pr 98.7 3.4E-08 7.3E-13 110.8 8.6 158 95-285 12-180 (672)
21 PRK05559 DNA topoisomerase IV 98.7 7E-08 1.5E-12 110.5 10.7 155 104-289 38-202 (631)
22 smart00433 TOP2c Topoisomerase 98.6 5.2E-08 1.1E-12 110.9 7.9 153 107-292 5-170 (594)
23 PRK05644 gyrB DNA gyrase subun 98.6 1.5E-07 3.3E-12 107.9 10.8 153 106-292 40-204 (638)
24 TIGR01059 gyrB DNA gyrase, B s 98.6 1.6E-07 3.4E-12 108.2 11.0 153 106-292 33-197 (654)
25 PF02518 HATPase_c: Histidine 98.6 4.2E-07 9.2E-12 80.1 9.8 80 106-214 8-87 (111)
26 PRK14939 gyrB DNA gyrase subun 98.4 5.4E-07 1.2E-11 104.6 9.8 145 105-283 39-196 (756)
27 KOG1977 DNA mismatch repair pr 98.0 4.5E-06 9.7E-11 93.7 5.1 157 105-293 23-190 (1142)
28 TIGR01058 parE_Gpos DNA topois 97.5 0.00026 5.6E-09 81.6 8.6 150 106-283 37-194 (637)
29 cd00075 HATPase_c Histidine ki 97.5 0.00042 9.1E-09 57.4 7.6 85 106-219 3-91 (103)
30 PRK09470 cpxA two-component se 97.2 0.0013 2.9E-08 71.0 9.3 77 107-213 357-433 (461)
31 smart00387 HATPase_c Histidine 97.1 0.0012 2.6E-08 55.6 5.9 80 106-214 8-87 (111)
32 PRK11100 sensory histidine kin 97.0 0.0035 7.7E-08 67.7 9.8 79 106-213 371-449 (475)
33 PRK10755 sensor protein BasS/P 96.9 0.0028 6.1E-08 66.7 8.7 76 106-213 250-325 (356)
34 PRK10604 sensor protein RstB; 96.9 0.0018 3.9E-08 70.8 7.4 77 107-213 323-399 (433)
35 TIGR01386 cztS_silS_copS heavy 96.9 0.0034 7.4E-08 67.6 9.0 79 107-213 357-435 (457)
36 PRK10549 signal transduction h 96.9 0.0026 5.7E-08 69.1 8.1 79 107-213 356-434 (466)
37 PRK11006 phoR phosphate regulo 96.8 0.0035 7.5E-08 68.2 8.2 80 106-213 320-399 (430)
38 PRK15347 two component system 96.8 0.0034 7.3E-08 74.5 8.3 74 107-213 517-590 (921)
39 COG0187 GyrB Type IIA topoisom 96.8 0.004 8.7E-08 70.6 8.3 161 104-294 37-209 (635)
40 TIGR02938 nifL_nitrog nitrogen 96.7 0.006 1.3E-07 65.8 9.2 79 106-213 390-470 (494)
41 TIGR02916 PEP_his_kin putative 96.7 0.0043 9.4E-08 71.9 8.0 74 107-213 583-656 (679)
42 PRK10815 sensor protein PhoQ; 96.5 0.0071 1.5E-07 67.6 8.5 73 107-213 382-454 (485)
43 PRK09303 adaptive-response sen 96.5 0.0074 1.6E-07 65.0 8.1 77 107-213 276-353 (380)
44 PLN03128 DNA topoisomerase 2; 96.4 0.0061 1.3E-07 74.3 7.5 127 107-262 56-195 (1135)
45 TIGR02966 phoR_proteo phosphat 96.4 0.013 2.7E-07 59.8 8.7 79 107-213 233-311 (333)
46 PRK09467 envZ osmolarity senso 96.3 0.01 2.2E-07 64.0 7.9 61 137-213 349-409 (435)
47 PTZ00109 DNA gyrase subunit b; 96.3 0.0058 1.3E-07 72.2 6.1 157 105-283 131-344 (903)
48 PTZ00108 DNA topoisomerase 2-l 96.3 0.0094 2E-07 73.6 8.1 132 107-262 61-203 (1388)
49 TIGR03785 marine_sort_HK prote 96.3 0.014 3.1E-07 68.2 9.2 79 107-213 601-679 (703)
50 PLN03237 DNA topoisomerase 2; 96.2 0.012 2.5E-07 72.8 8.0 162 107-295 81-259 (1465)
51 PHA02569 39 DNA topoisomerase 96.1 0.0072 1.6E-07 69.5 5.8 157 107-294 49-222 (602)
52 PRK15053 dpiB sensor histidine 96.1 0.022 4.7E-07 63.7 9.1 80 107-213 436-515 (545)
53 PRK10364 sensor protein ZraS; 96.1 0.015 3.3E-07 63.6 7.8 73 107-213 352-424 (457)
54 PRK11091 aerobic respiration c 96.0 0.024 5.3E-07 66.5 9.7 87 107-221 402-493 (779)
55 TIGR02956 TMAO_torS TMAO reduc 96.0 0.017 3.7E-07 69.1 8.5 84 107-221 583-671 (968)
56 PRK11086 sensory histidine kin 96.0 0.019 4.1E-07 63.5 8.1 76 106-213 436-511 (542)
57 PRK13837 two-component VirA-li 96.0 0.04 8.6E-07 65.6 11.1 81 107-221 564-663 (828)
58 PRK11466 hybrid sensory histid 95.9 0.016 3.5E-07 68.9 7.8 82 107-221 565-650 (914)
59 PRK10841 hybrid sensory kinase 95.8 0.063 1.4E-06 64.9 12.1 87 106-221 565-655 (924)
60 PRK04069 serine-protein kinase 95.8 0.011 2.3E-07 56.5 4.2 87 106-219 45-131 (161)
61 PRK09835 sensor kinase CusS; P 95.7 0.028 6.1E-07 61.3 8.1 79 107-213 379-457 (482)
62 COG0642 BaeS Signal transducti 95.6 0.021 4.5E-07 57.1 6.1 49 106-169 231-279 (336)
63 PRK10337 sensor protein QseC; 95.6 0.03 6.4E-07 60.8 7.7 72 107-213 356-427 (449)
64 PRK11360 sensory histidine kin 95.6 0.033 7.1E-07 61.6 7.8 51 107-171 504-555 (607)
65 TIGR01925 spIIAB anti-sigma F 95.6 0.048 1E-06 49.9 7.6 46 106-162 42-87 (137)
66 PRK10490 sensor protein KdpD; 95.5 0.03 6.5E-07 67.4 7.9 77 107-213 782-858 (895)
67 COG3290 CitA Signal transducti 95.5 0.046 1E-06 61.4 8.5 76 106-211 430-505 (537)
68 PRK11107 hybrid sensory histid 95.5 0.042 9E-07 65.3 8.8 86 107-221 412-506 (919)
69 PRK10618 phosphotransfer inter 95.4 0.05 1.1E-06 65.5 9.2 85 107-221 569-660 (894)
70 TIGR01924 rsbW_low_gc serine-p 95.2 0.053 1.1E-06 51.8 6.8 87 106-219 45-131 (159)
71 PRK03660 anti-sigma F factor; 95.1 0.093 2E-06 48.4 8.1 47 106-163 42-88 (146)
72 PRK11073 glnL nitrogen regulat 94.7 0.081 1.7E-06 55.3 7.3 49 106-169 240-300 (348)
73 COG4191 Signal transduction hi 94.6 0.049 1.1E-06 61.7 5.6 55 107-173 501-555 (603)
74 PF13581 HATPase_c_2: Histidin 94.4 0.11 2.4E-06 46.6 6.4 81 105-217 33-113 (125)
75 PRK09959 hybrid sensory histid 93.9 0.12 2.5E-06 63.8 7.4 84 107-221 832-924 (1197)
76 PRK13557 histidine kinase; Pro 92.5 0.44 9.6E-06 52.4 8.6 54 150-221 325-382 (540)
77 PRK10547 chemotaxis protein Ch 92.2 0.81 1.7E-05 53.6 10.5 55 108-168 390-448 (670)
78 PRK10600 nitrate/nitrite senso 92.1 0.16 3.5E-06 57.6 4.5 43 107-164 473-515 (569)
79 PRK11644 sensory histidine kin 92.0 0.14 2.9E-06 57.6 3.8 43 107-164 414-456 (495)
80 COG3920 Signal transduction hi 91.4 0.3 6.5E-06 49.4 5.2 46 107-163 126-173 (221)
81 PRK13560 hypothetical protein; 91.0 0.26 5.7E-06 57.1 4.9 45 107-164 715-762 (807)
82 COG5000 NtrY Signal transducti 90.8 0.5 1.1E-05 54.0 6.6 54 109-171 606-661 (712)
83 KOG0787 Dehydrogenase kinase [ 90.7 0.76 1.6E-05 49.8 7.5 122 105-266 262-383 (414)
84 COG2172 RsbW Anti-sigma regula 90.4 1.2 2.6E-05 42.3 7.9 84 105-221 42-128 (146)
85 COG4585 Signal transduction hi 90.3 0.3 6.5E-06 52.3 4.3 54 94-166 274-327 (365)
86 COG5002 VicK Signal transducti 89.9 1.1 2.3E-05 48.4 7.8 59 136-208 361-419 (459)
87 COG3850 NarQ Signal transducti 89.8 0.35 7.7E-06 54.4 4.3 43 107-164 485-527 (574)
88 COG4251 Bacteriophytochrome (l 87.4 1.5 3.3E-05 50.4 7.3 67 139-221 657-729 (750)
89 COG2205 KdpD Osmosensitive K+ 86.8 3.3 7.1E-05 49.1 9.7 75 107-211 779-853 (890)
90 PRK10935 nitrate/nitrite senso 83.2 0.99 2.2E-05 50.5 3.5 42 107-163 475-517 (565)
91 COG0643 CheA Chemotaxis protei 80.4 2.2 4.8E-05 50.4 5.0 127 107-261 436-571 (716)
92 COG2972 Predicted signal trans 79.4 3.4 7.4E-05 46.0 6.0 55 101-167 348-404 (456)
93 PRK13559 hypothetical protein; 78.8 2.1 4.5E-05 45.1 3.8 46 107-163 271-318 (361)
94 KOG1845 MORC family ATPases [C 74.1 2.1 4.6E-05 50.5 2.5 91 107-221 150-246 (775)
95 COG4192 Signal transduction hi 73.4 6.2 0.00013 44.2 5.7 50 107-171 568-620 (673)
96 KOG0355 DNA topoisomerase type 68.6 6.5 0.00014 46.6 4.8 45 107-165 57-101 (842)
97 COG3851 UhpB Signal transducti 50.8 19 0.0004 39.4 4.1 28 136-163 428-455 (497)
98 KOG1845 MORC family ATPases [C 48.7 10 0.00023 45.0 2.1 51 152-221 2-53 (775)
99 COG4564 Signal transduction hi 43.5 29 0.00062 37.6 4.1 53 102-167 354-408 (459)
100 cd03486 MutL_Trans_MLH3 MutL_T 37.8 54 0.0012 30.7 4.7 51 358-419 5-56 (141)
101 smart00481 POLIIIAc DNA polyme 37.6 54 0.0012 26.2 4.1 57 514-572 3-61 (67)
102 COG3852 NtrB Signal transducti 37.1 64 0.0014 34.8 5.5 56 107-167 245-305 (363)
103 COG3275 LytS Putative regulato 31.9 62 0.0013 36.7 4.6 51 104-164 457-507 (557)
104 PF01119 DNA_mis_repair: DNA m 31.7 51 0.0011 29.7 3.4 43 369-420 12-54 (119)
105 cd03482 MutL_Trans_MutL MutL_T 31.1 65 0.0014 29.4 4.0 35 378-420 24-58 (123)
106 PF04025 DUF370: Domain of unk 30.1 95 0.0021 26.4 4.4 44 105-167 23-70 (73)
107 COG2865 Predicted transcriptio 26.2 1E+02 0.0022 34.9 5.2 103 83-213 238-358 (467)
108 PTZ00069 60S ribosomal protein 25.0 71 0.0015 33.9 3.4 36 464-503 201-236 (300)
109 cd00329 TopoII_MutL_Trans MutL 24.3 1.5E+02 0.0032 25.1 4.9 31 380-418 26-56 (107)
110 cd03484 MutL_Trans_hPMS_2_like 23.3 1.3E+02 0.0028 28.2 4.6 36 379-420 43-78 (142)
111 PF14501 HATPase_c_5: GHKL dom 21.9 1.1E+02 0.0024 26.3 3.6 71 107-214 9-79 (100)
112 PRK02797 4-alpha-L-fucosyltran 20.6 1.8E+02 0.004 31.3 5.4 57 522-581 212-285 (322)
No 1
>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-137 Score=1078.47 Aligned_cols=504 Identities=51% Similarity=0.897 Sum_probs=464.8
Q ss_pred CCCceeeehhhHHHHHHHHHHccCCCchhhHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeC
Q 007698 78 TSGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDT 157 (592)
Q Consensus 78 ~~~e~~~Fq~e~~~Ll~lL~~~LYs~~~vfLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DN 157 (592)
+.+++|.||++++|||++|+|+||+|+++||||||+||+||++|+|++++|++..++...++.|+|..|++++.|.|+|.
T Consensus 70 ~kaeKf~FQaEVnRmMklIINSLY~NKeIFLRELISNASDAlDKIRllaLtd~~~L~~~~el~ikIK~Dke~klLhi~Dt 149 (785)
T KOG0020|consen 70 SKAEKFEFQAEVNRMMKLIINSLYRNKEIFLRELISNASDALDKIRLLALTDKDVLGETEELEIKIKADKEKKLLHITDT 149 (785)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhhhheeeeeccChhHhCcCcceEEEEeechhhCeeeEecc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhhhhcccchhHHHHhhhcccCC-CCCcccccccchhhhhhccccEEEEEEecCCCCceEEEEEecCC
Q 007698 158 GIGMTKEELVDCLGTIAQSGTSKFLKALKENNDLG-ADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADS 236 (592)
Q Consensus 158 GiGMt~eeL~~~L~tIa~Sgt~~f~~~l~~~~~~~-~~~~~IGqFGIGf~S~F~VadkV~V~Sr~~~~~~~~~W~s~~~~ 236 (592)
|||||++||+++|||||+|||++|++++.+.++.+ .-.++||||||||||||+|||+|+|+|+++ ++.+|.|+|++
T Consensus 150 GiGMT~edLi~NLGTIAkSGTs~Fl~Km~~~~~~~~~~~dlIGQFGVGFYsAfLVAD~vvVtsKhN-dD~QyiWESda-- 226 (785)
T KOG0020|consen 150 GIGMTREDLIKNLGTIAKSGTSEFLEKMQDSGDSEGLMNDLIGQFGVGFYSAFLVADRVVVTSKHN-DDSQYIWESDA-- 226 (785)
T ss_pred cCCccHHHHHHhhhhhhcccHHHHHHHhhccccchhhHHHHHHhcchhhhhhhhhcceEEEEeccC-CccceeeeccC--
Confidence 99999999999999999999999999998654321 234799999999999999999999999997 68899999975
Q ss_pred CceEEeecCCCCccCCCCcEEEEEeecCCccCCCchhHHHHHHHHhhccCccceeeccccccccccc--cccCCCC-C--
Q 007698 237 SSYVIREETDPEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEVE--EEEKPEE-G-- 311 (592)
Q Consensus 237 ~~y~I~~~~~~~~~~~~GT~I~L~Lk~~~~~e~le~~~i~~lvk~ys~fl~~PI~~~~~~~~~~~~~--~~~~~~~-~-- 311 (592)
+.|+|...++ +++.++||.|+|+||+++. +||++.+++++|++||+|+.|||++|..|++++|++ ++|+..+ +
T Consensus 227 n~FsvseDpr-g~tL~RGt~ItL~LkeEA~-dyLE~dtlkeLvkkYSqFINFpI~lWsSKt~~~E~pvEEe~~t~e~~~e 304 (785)
T KOG0020|consen 227 NSFSVSEDPR-GNTLGRGTEITLYLKEEAG-DYLEEDTLKELVKKYSQFINFPISLWSSKTVEVEVPVEEEEETEEDSTE 304 (785)
T ss_pred cceeeecCCC-CCcccCccEEEEEehhhhh-hhcchhHHHHHHHHHHHhcCCceeeeeccceeeeccccccccccccccc
Confidence 6999998874 5678999999999999999 999999999999999999999999999997655443 4332211 1
Q ss_pred -CC---CcccccccccccccccccceeeeecCCCccccCCCCCChHHHHHHHHHhhcCCCCCccccccccccceEEEEEE
Q 007698 312 -EE---QPEGEKKTKKTTKTEKYWDWELANETKPIWMRNPKEIEKDEYHEFYKKTFNEFLDPLAYTHFTTEGEVEFRSVL 387 (592)
Q Consensus 312 -~~---~~~~~~~~~~k~~~~~~~~~e~~N~~~~iW~r~~~~i~~eey~~Fyk~~~~~~~dpL~~~h~~~eg~~~~~~ll 387 (592)
++ ++++++|+|+|++.++.|+|+++|+.+|||+|+|++|+++||..||++++.|+.+||+|+||.+||.++|++||
T Consensus 305 d~ea~vEEee~EKpKTKKV~kT~wdWel~NdvKpIW~R~p~eV~EdEYt~FYkSlsKds~dPma~~HF~aEGeVtFksiL 384 (785)
T KOG0020|consen 305 DKEAAVEEEEEEKPKTKKVEKTVWDWELLNDVKPIWLRKPKEVTEDEYTKFYKSLSKDSTDPMAYIHFTAEGEVTFKSIL 384 (785)
T ss_pred chhhhhhhhhhccccccchhhcchhhhhhcccchhhccCchhcchHHHHHHHHhhhccccCccceeeeeccccEEEEEEE
Confidence 11 12223457899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCCcccccc-ccccCeEEEeeceeeccCCCCCcccccccccceeccCCCCCCccchHHhhhcHHHHHHHHHHHH
Q 007698 388 YIPGMGPLNNEEIMN-PKTKNIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVR 466 (592)
Q Consensus 388 yiP~~~p~~~~~~~~-~~~~~i~LYv~rvfI~d~~~~~llP~~l~Fv~GVVDS~dLplNvSRE~lq~~~~l~~irk~l~~ 466 (592)
|+|+.+|-++|+-+. ....+|+|||+||||+|+++ +++|.||+||||||||+|||||||||+||++.+|++|+|.|++
T Consensus 385 yVP~~~P~~lf~~Yg~~~~dniKLYVrrVFItDeF~-dmmPkYLsFikGvVDSDdLPLNVSrE~LQQHkllKvIkKKLvr 463 (785)
T KOG0020|consen 385 YVPKKAPRDLFDEYGSKKSDNIKLYVRRVFITDEFH-DMMPKYLSFIKGVVDSDDLPLNVSRETLQQHKLLKVIKKKLVR 463 (785)
T ss_pred EeCCCCchHHHHHhccccccceeEEEEEEEecchHH-HHhHHHHHHHhhccCcCcCcccccHHHHHHHHHHHHHHHHHHH
Confidence 999999999886554 34579999999999999996 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCChHHHHH-HHHHHhhhheeeeccccccHHhhcccccceeccCCCceeCHHHHHHhcCCCCCcEEEEe
Q 007698 467 KTFDMIQDISQSENKEDYKK-FWENFGRFLKLGCVEDSGNHKRLAPLLRFYTSKSEEELISLDEYVENMGEKQNAIYYLA 545 (592)
Q Consensus 467 k~~~~l~~la~~e~~e~y~~-f~~~f~~~lK~G~~eD~~~~~~l~~LLrf~ts~~~~~~~SL~eYv~rmk~~Qk~IYY~~ 545 (592)
|+++||+++|. ++|.. ||++||.+||+|++||..||.+||+||||+||+++++.+||++|++|||+.|+.|||++
T Consensus 464 K~LDmikKia~----e~~~d~FW~EFgtniKLGviED~sNr~rLAKLLrFqss~~~~~~TsLdqYveRMK~kQ~~Iyyma 539 (785)
T KOG0020|consen 464 KVLDMIKKIAG----EKYDDIFWKEFGTNIKLGVIEDPSNRTRLAKLLRFQSSNHPTKITSLDQYVERMKEKQDKIYYMA 539 (785)
T ss_pred HHHHHHHHhhc----cccchHHHHHhccceeeeeeeCcccHHHHHHHHhhhccCCCCCcccHHHHHHHHhhccccEEEec
Confidence 99999999983 57776 99999999999999999999999999999999988999999999999999999999999
Q ss_pred cCCHHHHhcChHHHHHHhCCCeEEEeccccchhhee-cccccCCccC
Q 007698 546 TDSLKSAKSAPFLEKLVQKDIEVRTSFVELYNFNFA-VGRHHGNDFC 591 (592)
Q Consensus 546 ~~s~~~~~~sp~lE~~~~kg~EVL~~~~~~d~~~~~-~~~~~~~~~~ 591 (592)
|.|+++++.|||+|.|.+|||||||+++||||||+| |-+|+||+|.
T Consensus 540 Gssr~e~E~sPfvERLlkKGyEVi~ltepVDEyciqalpe~d~KkFQ 586 (785)
T KOG0020|consen 540 GSSRKEVEKSPFVERLLKKGYEVIYLTEPVDEYCIQALPEFDGKKFQ 586 (785)
T ss_pred CCcHhhhccCcHHHHHHhcCceEEEEcchhHHHHHHhhhhhcchhHh
Confidence 999999999999999999999999999999999999 9999999984
No 2
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.4e-133 Score=1094.43 Aligned_cols=472 Identities=47% Similarity=0.807 Sum_probs=442.9
Q ss_pred CCceeeehhhHHHHHHHHHHccCCCchhhHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCC
Q 007698 79 SGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTG 158 (592)
Q Consensus 79 ~~e~~~Fq~e~~~Ll~lL~~~LYs~~~vfLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNG 158 (592)
..|++.||+|+++||++|+|+|||||++|||||||||+|||+|+||.++++|.+..+..+++|+|.+|+++++|+|+|||
T Consensus 3 ~~e~~~Fq~ev~~ll~lmihSlYSnKeIFLRELISNAsDAidKlr~~al~~~~~~~~~~~~~I~i~~Dk~~kTLtI~DNG 82 (623)
T COG0326 3 EQETRGFQAEVKQLLDLMIHSLYSNKEIFLRELISNASDAIDKLRFEALSDPELGEGDSDLRIRISFDKDNKTLTISDNG 82 (623)
T ss_pred chhhhhhhHHHHHHHHHHHHhccCCcHHHHHHHHhhhHHHHHHHHHHhccCccccCCCCCceEEEEEcccCCEEEEEeCC
Confidence 35789999999999999999999999999999999999999999999999999988888999999999999999999999
Q ss_pred CCCCHHHHHHHHhhhhcccchhHHHHhhhcccCCCCCcccccccchhhhhhccccEEEEEEecCCCCceEEEEEecCCCc
Q 007698 159 IGMTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSS 238 (592)
Q Consensus 159 iGMt~eeL~~~L~tIa~Sgt~~f~~~l~~~~~~~~~~~~IGqFGIGf~S~F~VadkV~V~Sr~~~~~~~~~W~s~~~~~~ 238 (592)
||||++|++++|||||+|||++|++++.+. . .+.++||||||||||||||||+|+|+||+++++.++.|+|.+ .+.
T Consensus 83 IGMT~~Ev~~~LgTIAkSgT~~F~~~l~~~--~-~~~~lIGQFGVGFYSaFmVAdkV~V~T~~~~~~~~~~W~S~g-~g~ 158 (623)
T COG0326 83 IGMTKDEVIENLGTIAKSGTKEFLESLSED--Q-KDSDLIGQFGVGFYSAFMVADKVTVITRSAGEDEAYHWESDG-EGE 158 (623)
T ss_pred CCCCHHHHHHHHHHhhhccHHHHHHHhccc--c-ccccccccccchhhheeeeeeeEEEEeccCCCCcceEEEEcC-CCc
Confidence 999999999999999999999999998753 2 578899999999999999999999999999989999999985 589
Q ss_pred eEEeecCCCCccCC-CCcEEEEEeecCCccCCCchhHHHHHHHHhhccCccceeeccccccccccccccCCCCCCCCccc
Q 007698 239 YVIREETDPEKLLK-RGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEVEEEEKPEEGEEQPEG 317 (592)
Q Consensus 239 y~I~~~~~~~~~~~-~GT~I~L~Lk~~~~~e~le~~~i~~lvk~ys~fl~~PI~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (592)
|+|+++.+. + +||+|+|||+++.. +|+++++|+++|++||+|+++||++.+++..+.
T Consensus 159 ytv~~~~~~----~~~GT~I~L~Lk~~e~-efl~~~rl~~ivkkYSd~i~~PI~~~~~~~~~~----------------- 216 (623)
T COG0326 159 YTVEDIDKE----PRRGTEITLHLKEEED-EFLEEWRLREIVKKYSDHIAYPIYIEGEKEKDE----------------- 216 (623)
T ss_pred eEEeeccCC----CCCCcEEEEEECCchH-HHhhhhHHHHHHHHHhcccccceEEeeeccccc-----------------
Confidence 999998753 4 59999999999988 999999999999999999999999855331100
Q ss_pred ccccccccccccccceeeeecCCCccccCCCCCChHHHHHHHHHhhcCCCCCccccccccccceEEEEEEEeeCCCCCCc
Q 007698 318 EKKTKKTTKTEKYWDWELANETKPIWMRNPKEIEKDEYHEFYKKTFNEFLDPLAYTHFTTEGEVEFRSVLYIPGMGPLNN 397 (592)
Q Consensus 318 ~~~~~~k~~~~~~~~~e~~N~~~~iW~r~~~~i~~eey~~Fyk~~~~~~~dpL~~~h~~~eg~~~~~~llyiP~~~p~~~ 397 (592)
...+|+.+|+.+|+|+|+++++++++|.+||+++.++|.+||+|+|+++||.+++.+|||||..+||++
T Consensus 217 -----------~~~~~e~iN~~~alW~r~ksei~~eeY~eFYk~~~~d~~~Pl~~~h~~~EG~~ey~~ll~iP~~aPfdl 285 (623)
T COG0326 217 -----------EVIEWETINKAKALWTRNKSEITDEEYKEFYKHLAHDFDDPLLWIHNKVEGRLEYTALLFIPSKAPFDL 285 (623)
T ss_pred -----------cchhHHHhccccCcccCChhhCChHHHHHHHHHhhcccCCCeEEEecccccceEEEEEEEccCCCCccc
Confidence 023589999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccccccccCeEEEeeceeeccCCCCCcccccccccceeccCCCCCCccchHHhhhcHHHHHHHHHHHHHHHHHHHHhhh
Q 007698 398 EEIMNPKTKNIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRKTFDMIQDISQ 477 (592)
Q Consensus 398 ~~~~~~~~~~i~LYv~rvfI~d~~~~~llP~~l~Fv~GVVDS~dLplNvSRE~lq~~~~l~~irk~l~~k~~~~l~~la~ 477 (592)
++ +..++|++||||||||||+| .+|||.||+||+|||||+|||||||||+||+|++++.||+.|++||+++|++||+
T Consensus 286 ~~--~~~k~glkLYv~rVfI~Dd~-~~llP~yl~Fv~GvIDS~DLpLNvSRE~LQ~n~~l~~Irk~l~kkvl~~L~~La~ 362 (623)
T COG0326 286 FR--RDRKRGLKLYVNRVFIMDDA-EDLLPNYLRFVRGVIDSEDLPLNVSREILQQNRILAAIRKALTKKVLSMLEKLAK 362 (623)
T ss_pred cc--ccccCCcEEEEeeeEEeCCh-hhhhhHHHhhheeeeecCCCCcccCHHHHccCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 74 33578999999999999999 4999999999999999999999999999999999999999999999999999996
Q ss_pred cCChHHHHHHHHHHhhhheeeeccccccHHhhcccccceec-cCCCceeCHHHHHHhcCCCCCcEEEEecCCHHHHhcCh
Q 007698 478 SENKEDYKKFWENFGRFLKLGCVEDSGNHKRLAPLLRFYTS-KSEEELISLDEYVENMGEKQNAIYYLATDSLKSAKSAP 556 (592)
Q Consensus 478 ~e~~e~y~~f~~~f~~~lK~G~~eD~~~~~~l~~LLrf~ts-~~~~~~~SL~eYv~rmk~~Qk~IYY~~~~s~~~~~~sp 556 (592)
++||+|.+||++||.+||+|+++|.+|+++|++||||.|| .++++++||+|||+|||++|+.|||++|++..++++||
T Consensus 363 -~~~e~y~~f~~~fg~~LKeG~~eD~~n~e~l~~lLrf~St~~~~~~~~sl~eYv~rmke~q~~IyY~tges~~~~~~sP 441 (623)
T COG0326 363 -DDPEKYRKFWKQFGLVLKEGLYEDFENKEKLLDLLRFRSTSDSGEKTVSLEEYVSRMKEGQKQIYYITGESYQAAKGSP 441 (623)
T ss_pred -cCHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhEecccCCCccCcccHHHHHHhcccccceeEEeccccHHHHhcCc
Confidence 5799999999999999999999999999999999999994 45588999999999999999999999999999999999
Q ss_pred HHHHHHhCCCeEEEeccccchhhee-cccccCCccC
Q 007698 557 FLEKLVQKDIEVRTSFVELYNFNFA-VGRHHGNDFC 591 (592)
Q Consensus 557 ~lE~~~~kg~EVL~~~~~~d~~~~~-~~~~~~~~~~ 591 (592)
++|.+++|||||||++++||+|++- +.+|+||+|-
T Consensus 442 ~lE~~k~kgieVL~l~d~iDe~~l~~~~e~egk~~~ 477 (623)
T COG0326 442 HLELFKAKGIEVLLLTDRIDEFMLTMLPEFEGKPFK 477 (623)
T ss_pred hHHHHHhcCcEEEecCccchHHHhhhhhhccCCcce
Confidence 9999999999999999999999999 9999999984
No 3
>PTZ00130 heat shock protein 90; Provisional
Probab=100.00 E-value=1.8e-131 Score=1114.96 Aligned_cols=504 Identities=45% Similarity=0.759 Sum_probs=451.6
Q ss_pred CCCceeeehhhHHHHHHHHHHccCCCchhhHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeC
Q 007698 78 TSGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDT 157 (592)
Q Consensus 78 ~~~e~~~Fq~e~~~Ll~lL~~~LYs~~~vfLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DN 157 (592)
.+.|+++||+|+++||+||+++|||||++|||||||||+|||+|+||++++++++.++..++.|+|..|.++++|+|+||
T Consensus 63 ~~~e~~~FQaEv~~Lldiii~sLYS~keIFLRELISNAsDAldKlr~~~lt~~~~~~~~~~~~I~I~~D~~~~tLtI~Dn 142 (814)
T PTZ00130 63 SGIEQHQYQTEVTRLMDIIVNSLYTQKEVFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISANKEKNILSITDT 142 (814)
T ss_pred cccceeehHHHHHHHHHHHhhccCCCCCceeehHhhhHHHHHHHHHHHHcCCchhcCCCCCceEEEEECCCCCEEEEEEC
Confidence 45789999999999999999999999999999999999999999999999999988888889999999999999999999
Q ss_pred CCCCCHHHHHHHHhhhhcccchhHHHHhhhcccCCCCCcccccccchhhhhhccccEEEEEEecCCCCceEEEEEecCCC
Q 007698 158 GIGMTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSS 237 (592)
Q Consensus 158 GiGMt~eeL~~~L~tIa~Sgt~~f~~~l~~~~~~~~~~~~IGqFGIGf~S~F~VadkV~V~Sr~~~~~~~~~W~s~~~~~ 237 (592)
|||||++||+++|||||+|||+.|++++++. +.+..+||||||||||||||||+|+|+||+++ +.+|.|++.+ .+
T Consensus 143 GIGMT~eEl~~nLgTIA~Sgt~~F~~~l~~~---~~~~~lIGQFGVGFYSaFmVAdkV~V~Trs~~-~~~~~W~s~g-~g 217 (814)
T PTZ00130 143 GIGMTKEDLINNLGTIAKSGTSNFLEAISKS---GGDMSLIGQFGVGFYSAFLVADKVIVYTKNNN-DEQYIWESTA-DA 217 (814)
T ss_pred CCCCCHHHHHHHhhhhcccccHHHHHHhhcc---CCCcccccccccchhheeeecCEEEEEEcCCC-CceEEEEECC-CC
Confidence 9999999999999999999999999988641 24568999999999999999999999999975 7789999985 58
Q ss_pred ceEEeecCCCCccCCCCcEEEEEeecCCccCCCchhHHHHHHHHhhccCccceeecccccccccccccc-C--CCCCC--
Q 007698 238 SYVIREETDPEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEVEEEE-K--PEEGE-- 312 (592)
Q Consensus 238 ~y~I~~~~~~~~~~~~GT~I~L~Lk~~~~~e~le~~~i~~lvk~ys~fl~~PI~~~~~~~~~~~~~~~~-~--~~~~~-- 312 (592)
.|+|.+.++ ....++||+|+|||+++.. +|++.++|++||++||+|++|||+++..++.++++++++ + +++++
T Consensus 218 ~y~I~e~~~-~~~~~rGT~I~LhLked~~-efl~~~~ik~likkYS~fI~~PI~l~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (814)
T PTZ00130 218 KFTIYKDPR-GSTLKRGTRISLHLKEDAT-NLMNDKKLVDLISKYSQFIQYPIYLLHENVYTEEVLADIAKEMENDPNYD 295 (814)
T ss_pred cEEEEECCC-CCCCCCCcEEEEEECCchh-hhccHHHHHHHHHHhhccCCCCEEEccccccccccccccccccccccccc
Confidence 999998753 2235799999999999999 999999999999999999999999986553332222111 0 00000
Q ss_pred C---CcccccccccccccccccceeeeecCCCccccCCCCCChHHHHHHHHHhhcCCCCCccccccccccceEEEEEEEe
Q 007698 313 E---QPEGEKKTKKTTKTEKYWDWELANETKPIWMRNPKEIEKDEYHEFYKKTFNEFLDPLAYTHFTTEGEVEFRSVLYI 389 (592)
Q Consensus 313 ~---~~~~~~~~~~k~~~~~~~~~e~~N~~~~iW~r~~~~i~~eey~~Fyk~~~~~~~dpL~~~h~~~eg~~~~~~llyi 389 (592)
+ ++.+++++++|++++++++|+++|+.+|||+|++++|++++|.+||+.++++|++||+|+||++||+++|+|||||
T Consensus 296 ~~e~~~~~~~~~k~k~v~~~~~~~e~vN~~~aiW~r~~~eit~EeY~eFYk~l~~~~~dPl~~iH~~~Eg~~~~~~LLYI 375 (814)
T PTZ00130 296 SVKVEETDDPNKKTRTVEKKVKKWKLMNEQKPIWLRPPKELTDEDYKKFFSVLSGFNDEPLYHIHFFAEGEIEFKCLIYI 375 (814)
T ss_pred cccccccccccccccccccceeeeeeeccCCCcccCCcccCCHHHHHHHHHHhcCCccCCceeeeeccCCCeeEEEEEEe
Confidence 0 0001223456777777889999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCccccccccccCeEEEeeceeeccCCCCCcccccccccceeccCCCCCCccchHHhhhcHHHHHHHHHHHHHHH
Q 007698 390 PGMGPLNNEEIMNPKTKNIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRKTF 469 (592)
Q Consensus 390 P~~~p~~~~~~~~~~~~~i~LYv~rvfI~d~~~~~llP~~l~Fv~GVVDS~dLplNvSRE~lq~~~~l~~irk~l~~k~~ 469 (592)
|+.+|++++.. ....++|+||||||||+|+|+ +|||+||+||||||||+|||||||||+||+|++|++||+.|++||+
T Consensus 376 P~~ap~~~~~~-~~~~~~ikLYvrrVfI~d~~~-dLLP~wL~FVkGVVDSeDLPLNVSRE~LQ~n~~l~~Irk~l~kkil 453 (814)
T PTZ00130 376 PSRAPSINDHL-FTKQNSIKLYVRRVLVADEFV-EFLPRYMSFVKGVVDSDDLPLNVSREQLQQNKILKAVSKRIVRKIL 453 (814)
T ss_pred cCCCccchhhh-hhccCceEEEEeeEEeecchh-hhhhHHHhhhEEEeecCCCCCccCHHHHccCHHHHHHHHHHHHHHH
Confidence 99999876531 225689999999999999994 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhc----------------------------CChHHHHHHHHHHhhhheeeeccccccHHhhcccccceeccCC
Q 007698 470 DMIQDISQS----------------------------ENKEDYKKFWENFGRFLKLGCVEDSGNHKRLAPLLRFYTSKSE 521 (592)
Q Consensus 470 ~~l~~la~~----------------------------e~~e~y~~f~~~f~~~lK~G~~eD~~~~~~l~~LLrf~ts~~~ 521 (592)
++|.+++++ ++|++|.+||++||.+||+||++|..|+++|++||||+||++
T Consensus 454 ~~L~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~d~e~Y~kF~~~fg~~LK~Gv~eD~~nre~l~~LLrF~Ss~~- 532 (814)
T PTZ00130 454 DTFRTLYKEGKKNKETLRAELAKETDEEKKKEIQKKINEPSTYKLIYKEYRKYLKTGCYEDDINRNKIVKLLLFKTMLH- 532 (814)
T ss_pred HHHHHHHhhccccchhcccccccccccccccccccccccHHHHHHHHHHHHHHHHhHhhcCHHHHHHHHHhheeeeCCC-
Confidence 999999861 568999999999999999999999999999999999999975
Q ss_pred CceeCHHHHHHhcCCCCCcEEEEecCCHHHHhcChHHHHHHhCCCeEEEeccccchhhee-cccccCCccC
Q 007698 522 EELISLDEYVENMGEKQNAIYYLATDSLKSAKSAPFLEKLVQKDIEVRTSFVELYNFNFA-VGRHHGNDFC 591 (592)
Q Consensus 522 ~~~~SL~eYv~rmk~~Qk~IYY~~~~s~~~~~~sp~lE~~~~kg~EVL~~~~~~d~~~~~-~~~~~~~~~~ 591 (592)
++++||+|||+||+++|+.|||++|++++++++|||+|.|+++|+||||+++|||+|+++ |++|+||+|.
T Consensus 533 ~~~~SL~eYv~rMke~Qk~IYY~t~~s~~~~~~SP~lE~~~~kg~EVL~l~d~iDE~~l~~L~e~~gk~~~ 603 (814)
T PTZ00130 533 PKSISLDTYIENMKPDQKFIYYASGDSYEYLSKIPQLQIFKKKNIDVVFLTESVDESCVQRVQEYDGKKFK 603 (814)
T ss_pred CCccCHHHHHhhhccCCeEEEEEeCCCHHHHhcChHHHHHHhCCCeEEEeCCchHHHHHHHHHHhcCceEE
Confidence 478999999999999999999999999999999999999999999999999999999999 9999999984
No 4
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=100.00 E-value=2.5e-130 Score=1104.77 Aligned_cols=498 Identities=47% Similarity=0.830 Sum_probs=449.1
Q ss_pred ceeeehhhHHHHHHHHHHccCCCchhhHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCC
Q 007698 81 EKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIG 160 (592)
Q Consensus 81 e~~~Fq~e~~~Ll~lL~~~LYs~~~vfLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiG 160 (592)
|+|+||+|+++||+||+|+||||+++|||||||||+|||+|+|+++++++++..+...+.|+|..|.++.+|+|.|||+|
T Consensus 3 e~~~Fqae~~~Ll~lli~slYs~~~iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~~~L~I~DnGiG 82 (701)
T PTZ00272 3 ETFAFQAEINQLMSLIINTFYSNKEIFLRELISNASDACDKIRYQSLTDPSVLGESPRLCIRVVPDKENKTLTVEDNGIG 82 (701)
T ss_pred ceEecHHHHHHHHHHHHhcccCCccHhHHHHHhhHHHHHHHHHHHhcCCchhcCCCCceEEEEEEcCCCCEEEEEECCCC
Confidence 78999999999999999999999999999999999999999999999999887777889999999988899999999999
Q ss_pred CCHHHHHHHHhhhhcccchhHHHHhhhcccCCCCCcccccccchhhhhhccccEEEEEEecCCCCceEEEEEecCCCceE
Q 007698 161 MTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSSYV 240 (592)
Q Consensus 161 Mt~eeL~~~L~tIa~Sgt~~f~~~l~~~~~~~~~~~~IGqFGIGf~S~F~VadkV~V~Sr~~~~~~~~~W~s~~~~~~y~ 240 (592)
||++||.++|++||+||++.|+++++. +.+..+|||||||||||||||++|+|+||+++ +.+|.|++.+ ++.|+
T Consensus 83 Mt~edl~~~LgtIa~SGt~~f~~~~~~----~~~~~~iGqFGvGfyS~Fmvad~V~V~Srs~~-~~~~~W~s~~-~g~y~ 156 (701)
T PTZ00272 83 MTKADLVNNLGTIARSGTKAFMEALEA----GGDMSMIGQFGVGFYSAYLVADRVTVTSKNNS-DESYVWESSA-GGTFT 156 (701)
T ss_pred CCHHHHHHHhhhhhhcchHHHHHHhhc----cCCccccCCCCcceEEEEEeccEEEEEEecCC-CceEEEEECC-CCcEE
Confidence 999999999999999999999988753 34567999999999999999999999999875 5799999975 58999
Q ss_pred EeecCCCCccCCCCcEEEEEeecCCccCCCchhHHHHHHHHhhccCccceeecccccccccccccc------CCCCCCC-
Q 007698 241 IREETDPEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEVEEEE------KPEEGEE- 313 (592)
Q Consensus 241 I~~~~~~~~~~~~GT~I~L~Lk~~~~~e~le~~~i~~lvk~ys~fl~~PI~~~~~~~~~~~~~~~~------~~~~~~~- 313 (592)
|.+.+. ...++||+|+|||+++.. +|+++++|+++|++||+|++|||+++..++++.++++++ +++++++
T Consensus 157 i~~~~~--~~~~~GT~I~L~Lk~d~~-ef~~~~~i~~li~kYs~fi~~PI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (701)
T PTZ00272 157 ITSTPE--SDMKRGTRITLHLKEDQM-EYLEPRRLKELIKKHSEFIGYDIELMVEKTTEKEVTDEDEEDTKKADEDGEEP 233 (701)
T ss_pred EEeCCC--CCCCCCCEEEEEECCchH-HhccHHHHHHHHHHhccccCcceEEeeccccccccCcchhhhccccccccccc
Confidence 988642 224799999999999998 999999999999999999999999976554332222111 0001100
Q ss_pred ------CcccccccccccccccccceeeeecCCCccccCCCCCChHHHHHHHHHhhcCCCCCccccccccccceEEEEEE
Q 007698 314 ------QPEGEKKTKKTTKTEKYWDWELANETKPIWMRNPKEIEKDEYHEFYKKTFNEFLDPLAYTHFTTEGEVEFRSVL 387 (592)
Q Consensus 314 ------~~~~~~~~~~k~~~~~~~~~e~~N~~~~iW~r~~~~i~~eey~~Fyk~~~~~~~dpL~~~h~~~eg~~~~~~ll 387 (592)
++.+++++++++++++.|+|+++|+.+|||+|+|++|++++|.+||+.++++|.+||+|+|+++||+++|+|||
T Consensus 234 ~~~~~~~~~~~~~~k~~~~~~~~~~~e~iN~~~~lW~r~~~~i~~eey~~Fyk~~~~~~~~Pl~~ih~~~eg~~~~~~ll 313 (701)
T PTZ00272 234 KVEEVKEGDEGKKKKTKKVKEVTKEYEVQNKHKPLWTRDPKDVTKEEYAAFYKAISNDWEDPAATKHFSVEGQLEFRSIM 313 (701)
T ss_pred ccccccccccccccccccccccccchhhcccCcCCeecCcccCCHHHHHHHHHHhcCCcCCCceeeeeccCCceeeEEEE
Confidence 00112234567777788999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCCccccccccccCeEEEeeceeeccCCCCCcccccccccceeccCCCCCCccchHHhhhcHHHHHHHHHHHHH
Q 007698 388 YIPGMGPLNNEEIMNPKTKNIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRK 467 (592)
Q Consensus 388 yiP~~~p~~~~~~~~~~~~~i~LYv~rvfI~d~~~~~llP~~l~Fv~GVVDS~dLplNvSRE~lq~~~~l~~irk~l~~k 467 (592)
|||+.+|+++++. +...++|+||||||||+|+|+ +|||+||+||||||||+|||||||||+||+|++|++||+.|++|
T Consensus 314 yiP~~~~~~~~~~-~~~~~~i~LY~~rVfI~d~~~-~llP~~l~FvkGVVDS~DLpLNvSRE~LQ~~~~l~~i~~~i~~k 391 (701)
T PTZ00272 314 FVPKRAPFDMFEP-NKKRNNIKLYVRRVFIMDNCE-DLCPDWLGFVKGVVDSEDLPLNISRENLQQNKILKVIRKNIVKK 391 (701)
T ss_pred EeCCCCccchhhh-hhccCceEEEEeeEEEecchh-hhhHHHHhheeEEeecCCCCCccCHHHHccCHHHHHHHHHHHHH
Confidence 9999999987641 224679999999999999994 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHhhhheeeeccccccHHhhcccccceeccCCCceeCHHHHHHhcCCCCCcEEEEecC
Q 007698 468 TFDMIQDISQSENKEDYKKFWENFGRFLKLGCVEDSGNHKRLAPLLRFYTSKSEEELISLDEYVENMGEKQNAIYYLATD 547 (592)
Q Consensus 468 ~~~~l~~la~~e~~e~y~~f~~~f~~~lK~G~~eD~~~~~~l~~LLrf~ts~~~~~~~SL~eYv~rmk~~Qk~IYY~~~~ 547 (592)
++++|+++|+ ++++|.+||++||.+||+|+++|.+|+++|++||||+||+++++++||+||++|||++|+.|||++|+
T Consensus 392 i~~~l~~la~--~~~~y~~f~~~~g~~lK~G~~~D~~~~~~l~~Llrf~ss~~~~~~~sL~eYv~rmk~~Q~~IYY~~~~ 469 (701)
T PTZ00272 392 CLEMFDEVAE--NKEDYKQFYEQFGKNIKLGIHEDTANRKKLMELLRFYSTESGEEMTTLKDYVTRMKAGQKSIYYITGD 469 (701)
T ss_pred HHHHHHHHhh--CHHHHHHHHHHHhhhhheeeccCHhHHHHHHHhhceeecCCCCceeeHHHHHHhhccCCceEEEEeCC
Confidence 9999999984 57999999999999999999999999999999999999987778999999999999999999999999
Q ss_pred CHHHHhcChHHHHHHhCCCeEEEeccccchhhee-cccccCCccC
Q 007698 548 SLKSAKSAPFLEKLVQKDIEVRTSFVELYNFNFA-VGRHHGNDFC 591 (592)
Q Consensus 548 s~~~~~~sp~lE~~~~kg~EVL~~~~~~d~~~~~-~~~~~~~~~~ 591 (592)
|++++++|||+|.|++||+|||||++|||+|+++ |++|+||+|.
T Consensus 470 s~~~~~~sP~lE~~~~kg~EVL~l~dpiDe~~i~~l~ey~~k~f~ 514 (701)
T PTZ00272 470 SKKKLETSPFIEQARRRGLEVLFMTEPIDEYVMQQVKDFEDKKFA 514 (701)
T ss_pred CHHHHHhChHHHHHHhCCCeEEEeCCcHHHHHHHHHHhcCCCceE
Confidence 9999999999999999999999999999999999 9999999984
No 5
>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.3e-128 Score=1037.11 Aligned_cols=459 Identities=48% Similarity=0.789 Sum_probs=439.3
Q ss_pred CCCceeeehhhHHHHHHHHHHccCCCchhhHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeC
Q 007698 78 TSGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDT 157 (592)
Q Consensus 78 ~~~e~~~Fq~e~~~Ll~lL~~~LYs~~~vfLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DN 157 (592)
++.|+|.||+++++||+++++++|||+++||||||+||+||++|+||.++++|+.. .+++.|+|.+++++++|+|.|+
T Consensus 32 ~~~et~~fqaE~~qLm~lii~s~YS~kEvFlRELISNaSDAldKiRy~~lt~~~~~--~~~l~I~i~~nk~~~tlti~Dt 109 (656)
T KOG0019|consen 32 EPQETHEFQAETNQLMDIVAKSLYSHKEVFLRELISNASDALEKLRYLELKGDEKA--LPELEIRIITNKDKRTITIQDT 109 (656)
T ss_pred ccccceehhhhHHhHHHHHHHHhhcchHHHHHhhhccccchHHHHHHHhhcCcccc--ccceeEEeccCCCcceEEEEec
Confidence 45689999999999999999999999999999999999999999999999999876 7889999999999999999999
Q ss_pred CCCCCHHHHHHHHhhhhcccchhHHHHhhhcccCCCCCcccccccchhhhhhccccEEEEEEecCCCCceEEEEEecCCC
Q 007698 158 GIGMTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSS 237 (592)
Q Consensus 158 GiGMt~eeL~~~L~tIa~Sgt~~f~~~l~~~~~~~~~~~~IGqFGIGf~S~F~VadkV~V~Sr~~~~~~~~~W~s~~~~~ 237 (592)
|||||++||.++|||||+|||++|++++++ ++.+.++||||||||||+|+||++|+|+|+++. +.++.|++.+ ++
T Consensus 110 GIGMTk~dLvnnLGTIAkSGtK~Fmealke---a~ad~~~IGQFGvGFYSaylVAdkV~V~tk~~~-~e~y~Wes~~-~g 184 (656)
T KOG0019|consen 110 GIGMTKEDLVNNLGTIAKSGSKAFLEALKE---AEAESNLIGQFGVGFYSAFMVADRVVVTTRHPA-DEGLQWTSNG-RG 184 (656)
T ss_pred CCCcCHHHHHhhhhhhhhcccHHHHHHHHh---cccchhhhhhcccchhhhhhhhheeEEeeccCC-CcceeeecCC-CC
Confidence 999999999999999999999999999985 357788999999999999999999999999975 5599999986 48
Q ss_pred ceEEeecCCCCccCCCCcEEEEEeecCCccCCCchhHHHHHHHHhhccCccceeeccccccccccccccCCCCCCCCccc
Q 007698 238 SYVIREETDPEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEVEEEEKPEEGEEQPEG 317 (592)
Q Consensus 238 ~y~I~~~~~~~~~~~~GT~I~L~Lk~~~~~e~le~~~i~~lvk~ys~fl~~PI~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (592)
+|+|...++ ..+||+|+||||+++. +|+++.+|+++|++||+|++|||++++
T Consensus 185 s~~v~~~~~----~~rGTki~l~lKe~~~-ey~ee~rikeiVKK~S~Fv~yPI~l~~----------------------- 236 (656)
T KOG0019|consen 185 SYEIAEASG----LRTGTKIVIHLKEGDC-EFLEEKRIKEVVKKYSNFVSYPIYLNG----------------------- 236 (656)
T ss_pred ceEEeeccC----ccccceEEeeehhhhh-hhccHhHHHHHHhhccccccccchhhh-----------------------
Confidence 999988764 7899999999999999 999999999999999999999999986
Q ss_pred ccccccccccccccceeeeecCCCccccCCCCCChHHHHHHHHHhhcCCCCCccccccccccceEEEEEEEeeCCCCCCc
Q 007698 318 EKKTKKTTKTEKYWDWELANETKPIWMRNPKEIEKDEYHEFYKKTFNEFLDPLAYTHFTTEGEVEFRSVLYIPGMGPLNN 397 (592)
Q Consensus 318 ~~~~~~k~~~~~~~~~e~~N~~~~iW~r~~~~i~~eey~~Fyk~~~~~~~dpL~~~h~~~eg~~~~~~llyiP~~~p~~~ 397 (592)
+.+|..+|||+|+|++|+.++|.+|||+++++|++||++.||++||+++|+++||||.++||++
T Consensus 237 ----------------ek~N~tKpiW~rnp~dit~eey~eFYksl~ndw~d~lav~hf~~eg~lefrail~vP~rap~~l 300 (656)
T KOG0019|consen 237 ----------------ERVNNLKAIWTMNPKEVNEEEHEEFYKSVSGDWDDPLYVLHFKTDGPLSIRSIFYIPKRAPNSM 300 (656)
T ss_pred ----------------hhhhccCcccccCchhhhHHHHHHHHHhhcccccchhhHhhhccccceEEEEEEeccccCcchh
Confidence 2389999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCeEEEeeceeeccCCCCCcccccccccceeccCCCCCCccchHHhhhcHHHHHHHHHHHHHHHHHHHHhhh
Q 007698 398 EEIMNPKTKNIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRKTFDMIQDISQ 477 (592)
Q Consensus 398 ~~~~~~~~~~i~LYv~rvfI~d~~~~~llP~~l~Fv~GVVDS~dLplNvSRE~lq~~~~l~~irk~l~~k~~~~l~~la~ 477 (592)
|+. +...+|++|||+||||+|+| .+|+|+||+||+|||||+|||||+|||+||+++++++||+.|++|++++|.++|
T Consensus 301 F~~-~kk~n~i~Ly~rrv~I~d~~-~~lipe~l~fv~gvVdSeDlPLNiSremlQ~~~i~k~~rk~l~~k~l~~~~e~a- 377 (656)
T KOG0019|consen 301 FDM-RKKKNGIKLYARRVLITDDA-GDLIPEWLRFVRGVVDSEDIPLNLSREMLQENAVLRKLRKVLPQKILEMFQDLA- 377 (656)
T ss_pred hhh-hhccCceEEEEEEEecCchh-HHHHHHHhchheeccccccCccchhHHHHhhhhHHHHHHHHHHHHHHHHHHHHh-
Confidence 975 35678999999999999998 599999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHhhhheeeeccccccHHh-hcccccceeccCCCceeCHHHHHHhcCCCCCcEEEEecCCHHHHhcCh
Q 007698 478 SENKEDYKKFWENFGRFLKLGCVEDSGNHKR-LAPLLRFYTSKSEEELISLDEYVENMGEKQNAIYYLATDSLKSAKSAP 556 (592)
Q Consensus 478 ~e~~e~y~~f~~~f~~~lK~G~~eD~~~~~~-l~~LLrf~ts~~~~~~~SL~eYv~rmk~~Qk~IYY~~~~s~~~~~~sp 556 (592)
+|+|+|++||++||++||+||++|.+|+.+ +++||||+||+++++++||++|++||+++|++|||+||+|+.++++||
T Consensus 378 -~d~e~Y~kFy~~f~~~lk~gi~e~s~~~~k~~a~lLry~ss~s~~~~~Sl~dYv~rm~~~qk~iyyi~~~s~~~~~~sp 456 (656)
T KOG0019|consen 378 -KDAEKYKKFFKNYGLFLKEGIVTASEQQVKEIAKLLRYESSKSGEGATSLDDYVERMREGQKNIYYITAPNRQLAESSP 456 (656)
T ss_pred -hhHHHHHHHHHHHhhhhhhcccchhhhhhhHHHHHhhhhccccccccccHHHHHHhhcccccceEEeccchhhhhhcch
Confidence 689999999999999999999999999988 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCeEEEeccccchhhee-cccccCCccC
Q 007698 557 FLEKLVQKDIEVRTSFVELYNFNFA-VGRHHGNDFC 591 (592)
Q Consensus 557 ~lE~~~~kg~EVL~~~~~~d~~~~~-~~~~~~~~~~ 591 (592)
|+|+++++|+|||||++|+|||+++ |++|+||+|.
T Consensus 457 ~~E~~k~~~~evly~~ep~DE~~~~~Lk~~~~k~lV 492 (656)
T KOG0019|consen 457 YYEAFKKKNYEVLFMYEPADEVVLLGLKEFKGKKLV 492 (656)
T ss_pred HHHHHHhcCceeEeeeccHHHHHHHhhhhhccccee
Confidence 9999999999999999999999999 9999999973
No 6
>PRK05218 heat shock protein 90; Provisional
Probab=100.00 E-value=1.2e-113 Score=966.40 Aligned_cols=462 Identities=48% Similarity=0.801 Sum_probs=432.5
Q ss_pred CceeeehhhHHHHHHHHHHccCCCchhhHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCC
Q 007698 80 GEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGI 159 (592)
Q Consensus 80 ~e~~~Fq~e~~~Ll~lL~~~LYs~~~vfLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGi 159 (592)
.|+++||+|+++||++|+++||+||++|||||||||+|||+|+|+.+++++.+..+..++.|+|.++.++++|+|+|||+
T Consensus 3 ~e~~~Fq~e~~~ll~ll~~~LYs~~~v~lRELiqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnG~ 82 (613)
T PRK05218 3 METGEFQAEVKQLLHLMIHSLYSNKEIFLRELISNASDAIDKLRFEALTDPALYEGDGDLKIRISFDKEARTLTISDNGI 82 (613)
T ss_pred cceeehhHhHHHHHHHHhhhhcCCchHHHHHHHhCHHHHHHHHHHHhccCccccCCCCCcEEEEEEcCCCCeEEEEECCC
Confidence 68999999999999999999999999999999999999999999999999888777778999999998888999999999
Q ss_pred CCCHHHHHHHHhhhhcccchhHHHHhhhcccCCCCCcccccccchhhhhhccccEEEEEEecCC-CCceEEEEEecCCCc
Q 007698 160 GMTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPR-SDKQYVWEAEADSSS 238 (592)
Q Consensus 160 GMt~eeL~~~L~tIa~Sgt~~f~~~l~~~~~~~~~~~~IGqFGIGf~S~F~VadkV~V~Sr~~~-~~~~~~W~s~~~~~~ 238 (592)
|||++|+..+|++||+||+++|+++++.. ...+..+||+|||||||+||||++|+|.||+.+ ++.++.|.+.+ ++.
T Consensus 83 GMt~eel~~~l~~ia~Sg~~~f~~k~~~~--~~~~~~~iG~fGiGf~S~f~va~~v~V~Sr~~~~~~~~~~w~~~g-~~~ 159 (613)
T PRK05218 83 GMTREEVIENLGTIAKSGTKEFLEKLKGD--QKKDSQLIGQFGVGFYSAFMVADKVTVITRSAGPAAEAVRWESDG-EGE 159 (613)
T ss_pred CCCHHHHHHHHHhhccccchhHHHHhhcc--cccccccccccCcCchhhhhccCEEEEEEcCCCCCCceEEEEEeC-Cce
Confidence 99999999999999999999999888632 123568999999999999999999999999977 66799999975 578
Q ss_pred eEEeecCCCCccCCCCcEEEEEeecCCccCCCchhHHHHHHHHhhccCccceeeccccccccccccccCCCCCCCCcccc
Q 007698 239 YVIREETDPEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEVEEEEKPEEGEEQPEGE 318 (592)
Q Consensus 239 y~I~~~~~~~~~~~~GT~I~L~Lk~~~~~e~le~~~i~~lvk~ys~fl~~PI~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (592)
|++.+.+. .++||+|+|+|++++. +|++.++|+++|++||+|+++||+++++
T Consensus 160 ~~i~~~~~----~~~GT~I~l~Lk~~~~-e~~e~~~i~~li~kys~~l~~PI~~~~~----------------------- 211 (613)
T PRK05218 160 YTIEEIEK----EERGTEITLHLKEDED-EFLDEWRIRSIIKKYSDFIPVPIKLEKE----------------------- 211 (613)
T ss_pred eEEeECCC----CCCCcEEEEEECcchh-hhcCHHHHHHHHHHHHhcCCCCEEEecc-----------------------
Confidence 99988652 3799999999999998 9999999999999999999999998431
Q ss_pred cccccccccccccceeeeecCCCccccCCCCCChHHHHHHHHHhhcCCCCCccccccccccceEEEEEEEeeCCCCCCcc
Q 007698 319 KKTKKTTKTEKYWDWELANETKPIWMRNPKEIEKDEYHEFYKKTFNEFLDPLAYTHFTTEGEVEFRSVLYIPGMGPLNNE 398 (592)
Q Consensus 319 ~~~~~k~~~~~~~~~e~~N~~~~iW~r~~~~i~~eey~~Fyk~~~~~~~dpL~~~h~~~eg~~~~~~llyiP~~~p~~~~ 398 (592)
+|+++|+++|+|+++++++++++|.+||+.++++|.+||+++|++++|++.++|+||+|..+|++++
T Consensus 212 -------------~~~~in~~~~~w~~~~~~i~~~~~~~fy~~~~~~~~~pl~~i~~~~e~~~~~~gll~iP~~~~~~~~ 278 (613)
T PRK05218 212 -------------EEETINSASALWTRSKSEITDEEYKEFYKHLAHDFDDPLFWIHNNVEGPFEYTGLLYIPKKAPFDLF 278 (613)
T ss_pred -------------cceeecCCccceecCCccccHHHHHHHhhhhcccccCCcEEEEcccCCceEEEEEEEeCCCCccchh
Confidence 2688999999999999999999999999999999999999999999999999999999999998865
Q ss_pred ccccccccCeEEEeeceeeccCCCCCcccccccccceeccCCCCCCccchHHhhhcHHHHHHHHHHHHHHHHHHHHhhhc
Q 007698 399 EIMNPKTKNIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRKTFDMIQDISQS 478 (592)
Q Consensus 399 ~~~~~~~~~i~LYv~rvfI~d~~~~~llP~~l~Fv~GVVDS~dLplNvSRE~lq~~~~l~~irk~l~~k~~~~l~~la~~ 478 (592)
+ +....+++||||||||+|+++ +|||+||+||||||||+|||||||||+||+|++|++||+.|++|++++|.++|+
T Consensus 279 ~--~~~~~~~~lyvn~v~I~d~~~-~lLP~wl~Fv~GVVDs~dLplnvSRE~lq~~~~l~~i~~~l~~kv~~~l~~la~- 354 (613)
T PRK05218 279 N--RDRKGGLKLYVKRVFIMDDAE-ELLPEYLRFVKGVIDSEDLPLNVSREILQEDRVVKKIRKAITKKVLDELEKLAK- 354 (613)
T ss_pred h--hcccccEEEEECcEEeeCchh-hhchHHHhheEEEeecCCCCCccCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 3 335689999999999999994 999999999999999999999999999999999999999999999999999995
Q ss_pred CChHHHHHHHHHHhhhheeeeccccccHHhhcccccceeccCCCceeCHHHHHHhcCCCCCcEEEEecCCHHHHhcChHH
Q 007698 479 ENKEDYKKFWENFGRFLKLGCVEDSGNHKRLAPLLRFYTSKSEEELISLDEYVENMGEKQNAIYYLATDSLKSAKSAPFL 558 (592)
Q Consensus 479 e~~e~y~~f~~~f~~~lK~G~~eD~~~~~~l~~LLrf~ts~~~~~~~SL~eYv~rmk~~Qk~IYY~~~~s~~~~~~sp~l 558 (592)
+|+++|++||++||.+||+||++|++++++|++||||+||+ +++++||+||++||+++|+.|||++++|++++++|||+
T Consensus 355 ~d~~~y~~f~~~~~~~lK~g~~~D~~~~~~~~~lL~f~ts~-~~~~~sL~ey~~rm~~~q~~Iyy~~~~~~~~~~~sp~~ 433 (613)
T PRK05218 355 NDREKYEKFWKEFGPVLKEGLYEDFANREKLAKLLRFASTH-EGKYVSLAEYVERMKEGQKKIYYITGDSREAAKNSPHL 433 (613)
T ss_pred hCHHHHHHHHHHHHHHHHhhhhccHHHHHHHHhhceeeecC-CCCcccHHHHHHhCcCCCceEEEEeCCCHHHHHhChHH
Confidence 58999999999999999999999999999999999999996 57899999999999999999999999999999999999
Q ss_pred HHHHhCCCeEEEeccccchhhee-cccccCCcc
Q 007698 559 EKLVQKDIEVRTSFVELYNFNFA-VGRHHGNDF 590 (592)
Q Consensus 559 E~~~~kg~EVL~~~~~~d~~~~~-~~~~~~~~~ 590 (592)
|.++++|+|||++++|+|+|+++ |++|+||+|
T Consensus 434 e~~~~~g~eVl~~~~~~De~~l~~l~~~~~~~~ 466 (613)
T PRK05218 434 ELFKKKGIEVLLLTDPIDEFWISYLEEFDGKPF 466 (613)
T ss_pred HHHHhcCceEEEeCCccHHHHHHHHHHhcCCce
Confidence 99999999999999999999999 999999976
No 7
>PRK14083 HSP90 family protein; Provisional
Probab=100.00 E-value=8.3e-106 Score=896.90 Aligned_cols=430 Identities=26% Similarity=0.405 Sum_probs=388.0
Q ss_pred eeeehhhHHHHHHHHHHccCCCchhhHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEe-CCCCcEEEEEeCCCC
Q 007698 82 KFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKP-DPENGTITITDTGIG 160 (592)
Q Consensus 82 ~~~Fq~e~~~Ll~lL~~~LYs~~~vfLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~-d~~~~~L~I~DNGiG 160 (592)
.++||+|+++||++|+++||++|++|||||||||+|||+++|+.. | ..+..|+|.+ +.++.+|+|+|||+|
T Consensus 2 ~~~Fqae~~~ll~ll~~~LYs~~~iflrELiqNA~DA~~~~~~~~---~-----~~~~~I~I~~~d~~~~~l~I~DnGiG 73 (601)
T PRK14083 2 SHRFQVDLRGVIDLLSRHLYSSPRVYVRELLQNAVDAITARRALD---P-----TAPGRIRIELTDAGGGTLIVEDNGIG 73 (601)
T ss_pred CccchHhHHHHHHHHHHhhcCCcHHHHHHHHHhHHHHHHhhhccC---C-----CCCceEEEEEccCCCcEEEEEeCCCC
Confidence 589999999999999999999999999999999999999988753 2 2345777777 778899999999999
Q ss_pred CCHHHHHHHHhhhhcccchhHHHHhhhcccCCCCCcccccccchhhhhhccccEEEEEEecCCCCceEEEEEecCCCceE
Q 007698 161 MTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSSYV 240 (592)
Q Consensus 161 Mt~eeL~~~L~tIa~Sgt~~f~~~l~~~~~~~~~~~~IGqFGIGf~S~F~VadkV~V~Sr~~~~~~~~~W~s~~~~~~y~ 240 (592)
||.+++.++|++||.||++.|. +. ..+..+||||||||||+||||++|+|.||+.++..++.|++.+ .+.|+
T Consensus 74 mt~eel~~~l~~ig~S~k~~~~--~~-----~~~~~~IG~FGIGf~S~F~vad~v~V~Tr~~~~~~~~~W~~~~-~g~y~ 145 (601)
T PRK14083 74 LTEEEVHEFLATIGRSSKRDEN--LG-----FARNDFLGQFGIGLLSCFLVADEIVVVSRSAKDGPAVEWRGKA-DGTYS 145 (601)
T ss_pred CCHHHHHHHHhhhccchhhhhh--hc-----ccccccccccccceEEEEEecCEEEEEeccCCCCceEEEEECC-CCceE
Confidence 9999999999999999988753 21 1345789999999999999999999999998667899999975 47999
Q ss_pred EeecCCCCccCCCCcEEEEEeecCCccCCCchhHHHHHHHHhhccCccceeeccccccccccccccCCCCCCCCcccccc
Q 007698 241 IREETDPEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEVEEEEKPEEGEEQPEGEKK 320 (592)
Q Consensus 241 I~~~~~~~~~~~~GT~I~L~Lk~~~~~e~le~~~i~~lvk~ys~fl~~PI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (592)
|+..+. ...++||+|+|+++++.. +|+++++|++++++||+|++|||+++++
T Consensus 146 i~~~~~--~~~~~GT~I~L~l~~d~~-~~~~~~~i~~li~~ys~~i~~pI~l~~~------------------------- 197 (601)
T PRK14083 146 VRKLET--ERAEPGTTVYLRPRPDAE-EWLERETVEELAKKYGSLLPVPIRVEGE------------------------- 197 (601)
T ss_pred EEeCCC--CCCCCCCEEEEEecCchh-hhccHHHHHHHHHHHhccCCCCcccCCc-------------------------
Confidence 987421 125799999999999988 9999999999999999999999998431
Q ss_pred cccccccccccceeeeecCCCccccCCCCCC--hHHHHHHHHHhhcCCCCCccccccccccceEEEEEEE-eeCCCCCCc
Q 007698 321 TKKTTKTEKYWDWELANETKPIWMRNPKEIE--KDEYHEFYKKTFNEFLDPLAYTHFTTEGEVEFRSVLY-IPGMGPLNN 397 (592)
Q Consensus 321 ~~~k~~~~~~~~~e~~N~~~~iW~r~~~~i~--~eey~~Fyk~~~~~~~dpL~~~h~~~eg~~~~~~lly-iP~~~p~~~ 397 (592)
.+.+|+.+|||+|++++|+ ++||.+||+.+++ .+||+|+|+++||+.. +|+|| ||..+|++
T Consensus 198 ------------~~~iN~~~~lW~~~~~eit~~~eey~~Fyk~~~~--~~Pl~~ih~~~e~~~~-~~~Ly~iP~~~~~~- 261 (601)
T PRK14083 198 ------------KGGVNETPPPWTRDYPDPETRREALLAYGEELLG--FTPLDVIPLDVPSGGL-EGVAYVLPYAVSPA- 261 (601)
T ss_pred ------------eeeecCCCCCccCCccccCccHHHHHHHHHHhcC--CCchheeeecccchhh-eEEEEecCCCCCcc-
Confidence 1579999999999999999 9999999999998 6899999999999875 78887 68888764
Q ss_pred cccccccccCeEEEeeceeeccCCCCCcccccccccceeccCCCCCCccchHHhhhcHHHHHHHHHHHHHHHHHHHHhhh
Q 007698 398 EEIMNPKTKNIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRKTFDMIQDISQ 477 (592)
Q Consensus 398 ~~~~~~~~~~i~LYv~rvfI~d~~~~~llP~~l~Fv~GVVDS~dLplNvSRE~lq~~~~l~~irk~l~~k~~~~l~~la~ 477 (592)
..++|+||||||||+|+| ++|||+||+||||||||+|||||||||+||+|+++++||+.|++||+++|+++|+
T Consensus 262 ------~~~~v~LY~~rVfI~d~~-~~lLP~wl~FvrGVVDS~DLpLNvSRE~LQ~~~~l~~ir~~i~kki~~~L~~la~ 334 (601)
T PRK14083 262 ------ARRKHRVYLKRMLLSEEA-ENLLPDWAFFVRCVVNTDELRPTASREALYEDDALAAVREELGEAIRKWLIGLAT 334 (601)
T ss_pred ------ccCceEEEeeeeEeecch-hhhhHHHHHHheeeeecCCCCCccCHHHHccCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 357999999999999999 4999999999999999999999999999999999999999999999999999995
Q ss_pred cCChHHHHHHHHHHhhhheeeeccccccHHhhcccccceeccCCCceeCHHHHHHhcCCCCCcEEEEecC-CHHHHhcCh
Q 007698 478 SENKEDYKKFWENFGRFLKLGCVEDSGNHKRLAPLLRFYTSKSEEELISLDEYVENMGEKQNAIYYLATD-SLKSAKSAP 556 (592)
Q Consensus 478 ~e~~e~y~~f~~~f~~~lK~G~~eD~~~~~~l~~LLrf~ts~~~~~~~SL~eYv~rmk~~Qk~IYY~~~~-s~~~~~~sp 556 (592)
+|+++|++||++||.+||+||++|.+|+++|++||||+||+ +.+||+||++|| +.|||+++. +..+++
T Consensus 335 -~d~e~y~~f~~~~g~~lK~g~~~D~~~~~~l~~lL~f~ss~---~~~sL~eY~~r~----~~IyY~~~~~~~~~~~--- 403 (601)
T PRK14083 335 -TDPERLRRLLAVHHLGVKALASHDDELLRLILPWLPFETTD---GRMTLAEIRRRH----GVIRYTSSVDEFRQLA--- 403 (601)
T ss_pred -hCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhceeecCC---CCcCHHHHHHhC----CeEEEEcCHHHHHHHH---
Confidence 68999999999999999999999999999999999999995 569999999997 479999996 777775
Q ss_pred HHHHHHhCCCeEEEeccccchhhee-ccc-ccCCccC
Q 007698 557 FLEKLVQKDIEVRTSFVELYNFNFA-VGR-HHGNDFC 591 (592)
Q Consensus 557 ~lE~~~~kg~EVL~~~~~~d~~~~~-~~~-~~~~~~~ 591 (592)
+.+++||+|||++++|||||+++ +++ |+|++|.
T Consensus 404 --~~~~~kg~eVl~~~~~iDe~~l~~l~~~~~~~~~~ 438 (601)
T PRK14083 404 --PIARAQGMGVINGGYTYDSELLERLPRLRPGLTVE 438 (601)
T ss_pred --HHHHHCCCeEEEeCCccHHHHHHHHHhhCCCCcEE
Confidence 79999999999999999999999 999 9999874
No 8
>PF00183 HSP90: Hsp90 protein; InterPro: IPR001404 Molecular chaperones, or heat shock proteins (Hsps) are ubiquitous proteins that act to maintain proper protein folding within the cell []. They assist in the folding of nascent polypeptide chains, and are also involved in the re-folding of denatured proteins following proteotoxic stress. As their name implies, the heat shock proteins were first identified as proteins that were up-regulated under conditions of elevated temperature. However, subsequent studies have shown that increased Hsp expression is induced by a variety of cellular stresses, including oxidative stress and inflammation. Five major Hsp families have been determined, and are categorized according to their molecular size (Hsp100, Hsp90, Hsp70, Hsp60, and the small Hsps). Hsps are involved in a variety of cellular processes that are ATP-dependent. These include: prevention of protein aggregation, protein degradation, protein trafficking, and maintenance of signalling proteins in a conformation that permits activation. Hsp90 chaperones are unique in their ability to regulate a specific subset of cellular signalling proteins that have been implicated in disease processes, including intracellular protein kinases, steroid hormone receptors, and growth factor receptors [].; GO: 0005524 ATP binding, 0051082 unfolded protein binding, 0006457 protein folding, 0006950 response to stress; PDB: 3K99_D 2H55_A 3RLP_A 1OSF_A 3R4M_A 1YES_A 1UY9_A 3FT8_A 2YE2_A 2QF6_A ....
Probab=100.00 E-value=1.3e-90 Score=766.77 Aligned_cols=320 Identities=48% Similarity=0.853 Sum_probs=274.3
Q ss_pred CCCchhHHHHHHHHhhccCccceeeccccccccccccccC-----CCC-CC-------C-C------ccccccccccccc
Q 007698 268 EFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEVEEEEK-----PEE-GE-------E-Q------PEGEKKTKKTTKT 327 (592)
Q Consensus 268 e~le~~~i~~lvk~ys~fl~~PI~~~~~~~~~~~~~~~~~-----~~~-~~-------~-~------~~~~~~~~~k~~~ 327 (592)
+||++.+|++||++||+|++|||+++.+++++++++++++ +++ ++ . + +.+++++++|+++
T Consensus 1 eyl~~~klk~lvkkyS~Fi~~PI~l~~~k~~~~ev~~ee~~~~~~~~~~~~~~~~~~~~~e~~~~eee~~~~~~k~k~~~ 80 (531)
T PF00183_consen 1 EYLEEYKLKELVKKYSQFISFPIYLWVEKEEEKEVPDEEEEEEEEEKEEEEKKEEEEEKVEEEDEEEEKEEKKPKTKKVK 80 (531)
T ss_dssp GGGSHHHHHHHHHHHHTTSSSEEEEEEEEEEECCCEHHHHHH---HTT-TT--------SSEEEE----S-TTEEEEECC
T ss_pred CcccHHHHHHHHHhhccccccceeEeeeccccccCCcchhhhhhhhhhhccccccccccccccccccccccccccccccc
Confidence 5899999999999999999999999998876655543221 000 00 0 0 0112356778888
Q ss_pred ccccceeeeecCCCccccCCCCCChHHHHHHHHHhhcCCCCCccccccccccceEEEEEEEeeCCCCCCccccccccccC
Q 007698 328 EKYWDWELANETKPIWMRNPKEIEKDEYHEFYKKTFNEFLDPLAYTHFTTEGEVEFRSVLYIPGMGPLNNEEIMNPKTKN 407 (592)
Q Consensus 328 ~~~~~~e~~N~~~~iW~r~~~~i~~eey~~Fyk~~~~~~~dpL~~~h~~~eg~~~~~~llyiP~~~p~~~~~~~~~~~~~ 407 (592)
+++++|+++|+.+|||+|+|++|++++|.+||+.++++|++||+|+||++||+++|+||||||+.+|+++++.. ...++
T Consensus 81 ~~~~~~~~vN~~~piW~r~~~eit~eey~~Fyk~l~~~~~~Pl~~iH~~~eg~~~~~~lLyiP~~~p~~~~~~~-~~~~~ 159 (531)
T PF00183_consen 81 ETVWEWEQVNTQKPIWTRDPKEITDEEYKEFYKSLSKDYDDPLFWIHFNAEGPFEFKSLLYIPKRAPFDLFEND-KKKNG 159 (531)
T ss_dssp EEEEEEEECS--S-GGGSSGGGS-HHHHHHHHHHHHTTSS-ESEEEEEEEESSSEEEEEEEEESS-SCCCCSSS-TT--S
T ss_pred cceeecccccccCcccccchhccchHHHHHHHHHhhhcccCchhheeccccccceeeEEEEeCCCCchhhhhhh-hcccc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999887532 34679
Q ss_pred eEEEeeceeeccCCCCCcccccccccceeccCCCCCCccchHHhhhcHHHHHHHHHHHHHHHHHHHHhhhcCChHHHHHH
Q 007698 408 IRLYVKRVFISDDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRKTFDMIQDISQSENKEDYKKF 487 (592)
Q Consensus 408 i~LYv~rvfI~d~~~~~llP~~l~Fv~GVVDS~dLplNvSRE~lq~~~~l~~irk~l~~k~~~~l~~la~~e~~e~y~~f 487 (592)
|+||||||||+|+| .+|||+||+||||||||+|||||||||+||+|++|++||+.|++||+++|.+|| +|+++|.+|
T Consensus 160 ikLY~rrVfI~d~~-~~llP~~L~FvkGVVDS~DLPLNVSRE~LQ~~~~lk~I~~~l~kkvl~~l~~l~--~d~e~y~~f 236 (531)
T PF00183_consen 160 IKLYVRRVFITDNF-EELLPEYLRFVKGVVDSDDLPLNVSRETLQQNKLLKKIRKKLVKKVLDMLKKLA--KDREKYEKF 236 (531)
T ss_dssp EEEEETTEEEESSC-GGSS-GGGTT-EEEEEESSS-SSCTHHHHHTHHHHHHHHHHHHHHHHHHHHHHH--TSHHHHHHH
T ss_pred ceeeeecccccchh-hcccchhhheeeeeeeccccCCccchhhhhccHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHH
Confidence 99999999999999 499999999999999999999999999999999999999999999999999998 478999999
Q ss_pred HHHHhhhheeeeccccccHHhhcccccceeccCCCceeCHHHHHHhcCCCCCcEEEEecCCHHHHhcChHHHHHHhCCCe
Q 007698 488 WENFGRFLKLGCVEDSGNHKRLAPLLRFYTSKSEEELISLDEYVENMGEKQNAIYYLATDSLKSAKSAPFLEKLVQKDIE 567 (592)
Q Consensus 488 ~~~f~~~lK~G~~eD~~~~~~l~~LLrf~ts~~~~~~~SL~eYv~rmk~~Qk~IYY~~~~s~~~~~~sp~lE~~~~kg~E 567 (592)
|++||.+||+||++|..||++|++||||+||+++++++||++|++||+++|+.|||++|+|++++++|||+|+|++||||
T Consensus 237 ~~~~g~~iK~G~~eD~~n~~kl~~LLrf~ss~~~~~~~SL~eYv~rmke~Qk~IYY~~g~s~~~~~~SP~lE~~k~kG~E 316 (531)
T PF00183_consen 237 WKEFGKFIKEGVIEDFKNREKLAKLLRFESSKSEGKLTSLDEYVERMKEGQKQIYYLTGESREEAEQSPYLEAFKKKGYE 316 (531)
T ss_dssp HHHHHHHHHHHHHH-GGGHHHHHTT-EEEETTTTTSEEEHHHHHHTS-TT-SEEEEEESSSHHHHHTSGGGHHHHHCT--
T ss_pred HHHHhHHHHhHHhhhhhhhhhcccceeeeccccccccccHHHhhhccccccccceEEecchHHHHhhccchhhHHhhCce
Confidence 99999999999999999999999999999999888999999999999999999999999999999999999999999999
Q ss_pred EEEeccccchhhee-cccccCCccC
Q 007698 568 VRTSFVELYNFNFA-VGRHHGNDFC 591 (592)
Q Consensus 568 VL~~~~~~d~~~~~-~~~~~~~~~~ 591 (592)
||||++|||+||++ |++|+||+|.
T Consensus 317 VL~l~dpIDe~~i~~L~e~~gkkf~ 341 (531)
T PF00183_consen 317 VLFLTDPIDEFVIQQLEEYEGKKFQ 341 (531)
T ss_dssp EEEE-SHHHHHHHHHHSEETTEEEE
T ss_pred EEEeCCchHHHHHHHHhhccccccc
Confidence 99999999999999 9999999984
No 9
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=99.83 E-value=1.9e-20 Score=212.51 Aligned_cols=293 Identities=19% Similarity=0.275 Sum_probs=190.3
Q ss_pred HHHHHHHHHHccCCC-----chhhHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCc-EEEEEeCCCCCC
Q 007698 89 VSRLMDLIVHSLYSH-----KEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENG-TITITDTGIGMT 162 (592)
Q Consensus 89 ~~~Ll~lL~~~LYs~-----~~vfLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~-~L~I~DNGiGMt 162 (592)
++.|-+.++|.|.++ |..+|||||+||+|| +..+|+|.++.++. .|+|+|||+||+
T Consensus 4 Ir~L~~~l~nqIAAGEVIerPaSVVKELVENSlDA------------------GAt~I~I~ve~gG~~~I~V~DNG~Gi~ 65 (638)
T COG0323 4 IRQLPPDLVNQIAAGEVIERPASVVKELVENSLDA------------------GATRIDIEVEGGGLKLIRVRDNGSGID 65 (638)
T ss_pred ceeCCHHHHHHhcccceeecHHHHHHHHHhccccc------------------CCCEEEEEEccCCccEEEEEECCCCCC
Confidence 455667777777775 899999999999999 46789998887764 599999999999
Q ss_pred HHHHHHHHhhhhcccchhHHHHhhhcccCCCCCcccccccchhhhhhccccEEEEEEecCCCCceEEEEEecCCCce-EE
Q 007698 163 KEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSSY-VI 241 (592)
Q Consensus 163 ~eeL~~~L~tIa~Sgt~~f~~~l~~~~~~~~~~~~IGqFGIGf~S~F~VadkV~V~Sr~~~~~~~~~W~s~~~~~~y-~I 241 (592)
++||..++.++|+| |+....| -......|..|=.+.|.-.| .+++|+||......++.|...++ ..- ++
T Consensus 66 ~~Dl~la~~rHaTS-------KI~~~~D-L~~I~TlGFRGEAL~SIasV-srlti~Srt~~~~~~~~~~~~g~-~~~~~~ 135 (638)
T COG0323 66 KEDLPLALLRHATS-------KIASLED-LFRIRTLGFRGEALASIASV-SRLTITSRTAEASEGTQIYAEGG-GMEVTV 135 (638)
T ss_pred HHHHHHHHhhhccc-------cCCchhH-HHHhhccCccHHHHHHHHhh-heeEEEeecCCcCceEEEEecCC-cccccc
Confidence 99999999999999 4443211 01234566677789999988 56999999876677888877643 222 44
Q ss_pred eecCCCCccCCCCcEEEEE------------eecCCccCCCchhHHHHHHHHhhccCccc-eeeccccccccccccccCC
Q 007698 242 REETDPEKLLKRGTQITLY------------LKEDDKYEFSEPTRIQGLVKNYSQFVSFP-IYTWQEKSRTIEVEEEEKP 308 (592)
Q Consensus 242 ~~~~~~~~~~~~GT~I~L~------------Lk~~~~~e~le~~~i~~lvk~ys~fl~~P-I~~~~~~~~~~~~~~~~~~ 308 (592)
.+.. .+.||+|+|. +|.+.+ || .+|.++|++|+ |.+| |.+
T Consensus 136 ~p~a-----~~~GTtVeV~dLF~NtPaRrKflks~~~-E~---~~i~~vv~r~A--Lahp~I~F---------------- 188 (638)
T COG0323 136 KPAA-----HPVGTTVEVRDLFYNTPARRKFLKSEKT-EF---GHITELINRYA--LAHPDISF---------------- 188 (638)
T ss_pred cCCC-----CCCCCEEEehHhhccChHHHHhhcccHH-HH---HHHHHHHHHHH--hcCCCeEE----------------
Confidence 4443 3569999998 555544 44 78999999999 8887 664
Q ss_pred CCCCCCcccccccccccccccccceeeeecCC---CccccCCCCCChHHHHHHHHHhhc-CCCCCccccccccccceEEE
Q 007698 309 EEGEEQPEGEKKTKKTTKTEKYWDWELANETK---PIWMRNPKEIEKDEYHEFYKKTFN-EFLDPLAYTHFTTEGEVEFR 384 (592)
Q Consensus 309 ~~~~~~~~~~~~~~~k~~~~~~~~~e~~N~~~---~iW~r~~~~i~~eey~~Fyk~~~~-~~~dpL~~~h~~~eg~~~~~ 384 (592)
.+.++++ .+-..+... ...+.-+.+++ .+...+..++...++ +++.
T Consensus 189 -------------------------~l~~~gk~~~~~~~~~~~~----~~~~ri~~i~G~~~~~~~l~i~~~~~~-~~l~ 238 (638)
T COG0323 189 -------------------------SLSHNGKLRIELLKLPGTG----DLEERIAAVYGTEFLKNALPIENEHED-LRLS 238 (638)
T ss_pred -------------------------EEEECCceeeEEEecCCCC----cHHHHHHHHhCHHHHHhhcccccCCCc-eEEE
Confidence 2333333 111111111 11123344443 222333335555555 8899
Q ss_pred EEEEeeCCCCCCccccccccccCeEEEeeceeeccCC-C-------CCccccc---ccccceeccCCCCCCccc---hHH
Q 007698 385 SVLYIPGMGPLNNEEIMNPKTKNIRLYVKRVFISDDF-D-------GELFPRY---LSFVKGVVDSDDLPLNVS---REI 450 (592)
Q Consensus 385 ~llyiP~~~p~~~~~~~~~~~~~i~LYv~rvfI~d~~-~-------~~llP~~---l~Fv~GVVDS~dLplNvS---RE~ 450 (592)
|++..|.. .+..+..+.+|||+++|.|.. . .+.||.= +.++.=-+|...+-.||. +|.
T Consensus 239 G~v~~P~~--------~r~~~~~q~~fVNgR~V~~~~l~~Ai~~aY~~~L~~~r~P~~vL~l~l~p~~vDVNVHP~K~EV 310 (638)
T COG0323 239 GYVSLPEF--------TRASRDYQYLFVNGRPVRDKLLNHALREAYADYLPRGRYPVFVLFLELDPELVDVNVHPAKKEV 310 (638)
T ss_pred EEeccccc--------ccCCccceEEEECCCEeccHHHHHHHHHHHHhhccCCCCcEEEEEEeeChhhcccccCCCcceE
Confidence 99998842 244667899999999999873 0 2344332 333344567777777775 332
Q ss_pred hhhcHHHHHHHHHHHHHHHHHHHHhh
Q 007698 451 LQESRIVRIMRKRLVRKTFDMIQDIS 476 (592)
Q Consensus 451 lq~~~~l~~irk~l~~k~~~~l~~la 476 (592)
--.+. +.|++.|.+.|.+.|.+..
T Consensus 311 rf~~~--~~i~~~I~~~I~~~L~~~~ 334 (638)
T COG0323 311 RFSDE--RLVHDLIYEAIKEALAQQG 334 (638)
T ss_pred EecCH--HHHHHHHHHHHHHHHHhcc
Confidence 21111 3445555555555555543
No 10
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.74 E-value=6.5e-17 Score=169.62 Aligned_cols=159 Identities=22% Similarity=0.258 Sum_probs=106.9
Q ss_pred HccCCCchhhHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCC-cEEEEEeCCCCCCHHHHHHHHhhhhcc
Q 007698 98 HSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPEN-GTITITDTGIGMTKEELVDCLGTIAQS 176 (592)
Q Consensus 98 ~~LYs~~~vfLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~-~~L~I~DNGiGMt~eeL~~~L~tIa~S 176 (592)
.....++..+|+|||+||+||. +..|.|.+..++ ..|+|.|||.||+.+++...+....+|
T Consensus 17 ~~~i~~~~~~l~eLi~Na~dA~------------------a~~I~i~~~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~ts 78 (312)
T TIGR00585 17 GEVIERPASVVKELVENSLDAG------------------ATRIDVEIEEGGLKLIEVSDNGSGIDKEDLPLACERHATS 78 (312)
T ss_pred cCchhhHHHHHHHHHHHHHHCC------------------CCEEEEEEEeCCEEEEEEEecCCCCCHHHHHHHhhCCCcC
Confidence 4556778899999999999993 224555444443 359999999999999998877766655
Q ss_pred cchhHHHHhhhcccCCCCCcccccccchhhhhhccccEEEEEEec-CCCCceEEEEEecCCCceEEeecCCCCccCCCCc
Q 007698 177 GTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKS-PRSDKQYVWEAEADSSSYVIREETDPEKLLKRGT 255 (592)
Q Consensus 177 gt~~f~~~l~~~~~~~~~~~~IGqFGIGf~S~F~VadkV~V~Sr~-~~~~~~~~W~s~~~~~~y~I~~~~~~~~~~~~GT 255 (592)
-...+- . .......|.+|.|++|...+| +++|+|+. .++..++.|... | + .+.... ....++||
T Consensus 79 k~~~~~-~-------~~~~~~~G~rG~al~si~~~s-~~~i~S~~~~~~~~~~~~~~~-g-~--~~~~~~--~~~~~~GT 143 (312)
T TIGR00585 79 KIQSFE-D-------LERIETLGFRGEALASISSVS-RLTITTKTSAADGLAWQALLE-G-G--MIEEIK--PAPRPVGT 143 (312)
T ss_pred CCCChh-H-------hhcccccCccchHHHHHHhhC-cEEEEEeecCCCcceEEEEEC-C-C--cCcccc--cccCCCcc
Confidence 322210 0 123456899999999999998 79999998 556678888743 3 2 222211 11247999
Q ss_pred EEEEE-eecC---CccCCC-----chhHHHHHHHHhhccCccc-eee
Q 007698 256 QITLY-LKED---DKYEFS-----EPTRIQGLVKNYSQFVSFP-IYT 292 (592)
Q Consensus 256 ~I~L~-Lk~~---~~~e~l-----e~~~i~~lvk~ys~fl~~P-I~~ 292 (592)
+|++. |-.. .. .++ +...++.++.+|+ +.+| |.+
T Consensus 144 tV~v~~lf~n~p~r~-~~~~~~~~~~~~i~~~l~~~a--l~~p~i~f 187 (312)
T TIGR00585 144 TVEVRDLFYNLPVRR-KFLKSPKKEFRKILDLLNRYA--LIHPDVSF 187 (312)
T ss_pred EEEEchhhccCchhh-hhccCcHHHHHHHHHHHHHHh--hcCCCeEE
Confidence 99998 1110 00 111 2367999999999 6676 443
No 11
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=99.72 E-value=7.7e-17 Score=183.23 Aligned_cols=256 Identities=20% Similarity=0.280 Sum_probs=160.6
Q ss_pred HccCCCchhhHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCC-CcEEEEEeCCCCCCHHHHHHHHhhhhcc
Q 007698 98 HSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE-NGTITITDTGIGMTKEELVDCLGTIAQS 176 (592)
Q Consensus 98 ~~LYs~~~vfLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~-~~~L~I~DNGiGMt~eeL~~~L~tIa~S 176 (592)
.....+|..+|+|||+||+||. ...|.|.+..+ ...|+|.|||.||+.+++...+..+++|
T Consensus 17 gevI~~~~svvkElveNsiDAg------------------at~I~v~i~~~g~~~i~V~DnG~Gi~~~~~~~~~~~~~ts 78 (617)
T PRK00095 17 GEVVERPASVVKELVENALDAG------------------ATRIDIEIEEGGLKLIRVRDNGCGISKEDLALALARHATS 78 (617)
T ss_pred cCcccCHHHHHHHHHHHHHhCC------------------CCEEEEEEEeCCeEEEEEEEcCCCCCHHHHHHHhhccCCC
Confidence 3444568999999999999993 33566665433 3589999999999999999988888877
Q ss_pred cchhHHHHhhhcccCCCCCcccccccchhhhhhccccEEEEEEecCCCCceEEEEEecCCCceEEeecCCCCccCCCCcE
Q 007698 177 GTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSSYVIREETDPEKLLKRGTQ 256 (592)
Q Consensus 177 gt~~f~~~l~~~~~~~~~~~~IGqFGIGf~S~F~VadkV~V~Sr~~~~~~~~~W~s~~~~~~y~I~~~~~~~~~~~~GT~ 256 (592)
.-..+ . + .......|..|.|+.|+-.|+ +++|+|++.++..+|.+...+| ....+.+.. .++||+
T Consensus 79 Ki~~~----~---d-l~~~~t~GfrGeAL~sI~~vs-~l~i~s~~~~~~~~~~~~~~~G-~~~~~~~~~-----~~~GT~ 143 (617)
T PRK00095 79 KIASL----D---D-LEAIRTLGFRGEALPSIASVS-RLTLTSRTADAAEGWQIVYEGG-EIVEVKPAA-----HPVGTT 143 (617)
T ss_pred CCCCh----h---H-hhccccCCcchhHHHhhhhce-EEEEEEecCCCCceEEEEecCC-cCcceeccc-----CCCCCE
Confidence 32111 0 0 012345899999999999886 7999999976666777765432 221222221 469999
Q ss_pred EEEE------------eecCCccCCCchhHHHHHHHHhhccCccc-eeeccccccccccccccCCCCCCCCccccccccc
Q 007698 257 ITLY------------LKEDDKYEFSEPTRIQGLVKNYSQFVSFP-IYTWQEKSRTIEVEEEEKPEEGEEQPEGEKKTKK 323 (592)
Q Consensus 257 I~L~------------Lk~~~~~e~le~~~i~~lvk~ys~fl~~P-I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (592)
|++. ++... .+...|.+++++|+ +.+| |.+.
T Consensus 144 V~v~~LF~n~P~Rrkflk~~~----~e~~~i~~~v~~~A--l~~p~i~f~------------------------------ 187 (617)
T PRK00095 144 IEVRDLFFNTPARRKFLKSEK----TELGHIDDVVNRLA--LAHPDVAFT------------------------------ 187 (617)
T ss_pred EEechhhccCcHHHHhccCcH----HHHHHHHHHHHHHh--hcCCCcEEE------------------------------
Confidence 9997 12211 23357999999999 7777 6542
Q ss_pred ccccccccceeeeecCCCccccCCCCCChHHHHHHHHHhhc-CCCCCccccccccccceEEEEEEEeeCCCCCCcccccc
Q 007698 324 TTKTEKYWDWELANETKPIWMRNPKEIEKDEYHEFYKKTFN-EFLDPLAYTHFTTEGEVEFRSVLYIPGMGPLNNEEIMN 402 (592)
Q Consensus 324 k~~~~~~~~~e~~N~~~~iW~r~~~~i~~eey~~Fyk~~~~-~~~dpL~~~h~~~eg~~~~~~llyiP~~~p~~~~~~~~ 402 (592)
+.++++.+|..++. ....++...+++ +....+..+.... +.+.+.|++..|... +
T Consensus 188 -----------l~~~~~~~~~~~~~----~~~~~~i~~i~g~~~~~~l~~~~~~~-~~~~i~g~is~p~~~--------~ 243 (617)
T PRK00095 188 -----------LTHNGKLVLQTRGA----GQLLQRLAAILGREFAENALPIDAEH-GDLRLSGYVGLPTLS--------R 243 (617)
T ss_pred -----------EEECCEEEEEeCCC----CCHHHHHHHHhCHHhHhheEEEeccC-CCEEEEEEEeCcccc--------c
Confidence 22233334443332 234556666664 2222333333332 338889988777532 2
Q ss_pred ccccCeEEEeeceeeccCC--------CCCcccc--c-ccccceeccCCCCCCcc
Q 007698 403 PKTKNIRLYVKRVFISDDF--------DGELFPR--Y-LSFVKGVVDSDDLPLNV 446 (592)
Q Consensus 403 ~~~~~i~LYv~rvfI~d~~--------~~~llP~--~-l~Fv~GVVDS~dLplNv 446 (592)
.....+.+|||++.|.+.. -..++|. | ..++.--||...+-.||
T Consensus 244 ~~~~~~~~fvN~R~v~~~~l~~ai~~~y~~~~~~~~~P~~~l~i~~~~~~~DvNv 298 (617)
T PRK00095 244 ANRDYQYLFVNGRYVRDKLLNHAIRQAYHDLLPRGRYPAFVLFLELDPHQVDVNV 298 (617)
T ss_pred CCCcceEEEECCcEecCHHHHHHHHHHHHHhccCCCCcEEEEEEEeChHhccccc
Confidence 2456789999999997631 0133442 2 23344445666666777
No 12
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=99.70 E-value=3.3e-17 Score=152.16 Aligned_cols=103 Identities=33% Similarity=0.476 Sum_probs=78.5
Q ss_pred CCCchhhHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeC-CCCcEEEEEeCCCCCCHHHHHHHHhhhhcccch
Q 007698 101 YSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPD-PENGTITITDTGIGMTKEELVDCLGTIAQSGTS 179 (592)
Q Consensus 101 Ys~~~vfLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d-~~~~~L~I~DNGiGMt~eeL~~~L~tIa~Sgt~ 179 (592)
|++ +.+|+|||+||+||... .+.|.|..+ .+...|+|.|||.||+.++|.. +++++.|.+.
T Consensus 1 y~~-~~al~ElI~Ns~DA~a~----------------~I~I~i~~~~~~~~~i~I~DnG~Gm~~~~l~~-~~~~g~s~k~ 62 (137)
T PF13589_consen 1 YSP-EDALRELIDNSIDAGAT----------------NIKISIDEDKKGERYIVIEDNGEGMSREDLES-FFRIGRSSKK 62 (137)
T ss_dssp -SC-THHHHHHHHHHHHHHHH----------------HEEEEEEEETTTTTEEEEEESSS---HHHHHH-HTTCHHTHHH
T ss_pred CcH-HHHHHHHHHHHHHccCC----------------EEEEEEEcCCCCCcEEEEEECCcCCCHHHHHH-hccccCCCCC
Confidence 566 88999999999999753 256666655 3468999999999999999998 7789988653
Q ss_pred hHHHHhhhcccCCCCCcccccccch-hhhhhccccEEEEEEecCCCCceEEEEE
Q 007698 180 KFLKALKENNDLGADNGLIGQFGVG-FYSAFLVAQKVVVSTKSPRSDKQYVWEA 232 (592)
Q Consensus 180 ~f~~~l~~~~~~~~~~~~IGqFGIG-f~S~F~VadkV~V~Sr~~~~~~~~~W~s 232 (592)
.. .....+|+||+| .+|+|+++++++|+|+..+....+.|..
T Consensus 63 ~~-----------~~~~~~G~~G~G~k~A~~~~~~~~~v~S~~~~~~~~~~~~~ 105 (137)
T PF13589_consen 63 SE-----------KDRQSIGRFGIGLKLAIFSLGDRVEVISKTNGESFTYTIDY 105 (137)
T ss_dssp HH-----------HHGGGGGGGTSGCGGGGGGTEEEEEEEEESTTSSSEEEEEE
T ss_pred ch-----------hhhhcCCCcceEHHHHHHHhcCEEEEEEEECCCCcEEEEEE
Confidence 21 123469999999 8899999999999999987666666644
No 13
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=99.42 E-value=6.7e-13 Score=141.93 Aligned_cols=138 Identities=25% Similarity=0.315 Sum_probs=99.4
Q ss_pred hhHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeC-CCCcEEEEEeCCCCCCHHHHHHHHhhhhcccchhHHHH
Q 007698 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPD-PENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKA 184 (592)
Q Consensus 106 vfLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d-~~~~~L~I~DNGiGMt~eeL~~~L~tIa~Sgt~~f~~~ 184 (592)
..++|||.||.|||+....+ +.+.|+|... .+--+++|+|||+|++.+.+.+.||++-.|++ |.
T Consensus 39 ~tv~ElV~NSLDA~eeaGIL-----------PdI~v~I~~~~~d~y~v~veDNGpGIP~e~IPkvFGk~LygSK--fh-- 103 (538)
T COG1389 39 TTVHELVTNSLDACEEAGIL-----------PDIKVEIERIGKDHYKVIVEDNGPGIPEEQIPKVFGKMLYGSK--FH-- 103 (538)
T ss_pred HHHHHHHhcchhhHHhcCCC-----------CceEEEEEecCCceEEEEEecCCCCCChhHhHHHHHHHhccch--hh--
Confidence 38999999999999876654 5566776643 44468999999999999999999999987743 32
Q ss_pred hhhcccCCCCCcccccccchhhhhhcccc-----EEEEEEecCCCCceEEEEEecC--CCceEE-eecCCCCccCCCCcE
Q 007698 185 LKENNDLGADNGLIGQFGVGFYSAFLVAQ-----KVVVSTKSPRSDKQYVWEAEAD--SSSYVI-REETDPEKLLKRGTQ 256 (592)
Q Consensus 185 l~~~~~~~~~~~~IGqFGIGf~S~F~Vad-----kV~V~Sr~~~~~~~~~W~s~~~--~~~y~I-~~~~~~~~~~~~GT~ 256 (592)
...+.-||+|||..+|.+.|. -|.|.|+..++..++..+...+ .++-.| +....+....+|||+
T Consensus 104 --------~~~QsRGqqGiGis~avLysQmTtGkPv~V~s~T~~s~~~~~~~l~id~~kNEp~Iv~r~~~~~~~~~hGT~ 175 (538)
T COG1389 104 --------RNIQSRGQQGIGISAAVLYSQMTTGKPVRVISSTGDSGTAYEYELKIDVQKNEPEIVERGEVENPGGWHGTR 175 (538)
T ss_pred --------hhhhccccccccHHHHHHHHHhcCCCceEEEecCCCCcceEEEEEEecCCCCcchhhhcccccCCCCCCceE
Confidence 123468999999877766654 6999999876667765543332 233333 222223334579999
Q ss_pred EEEEeecCCc
Q 007698 257 ITLYLKEDDK 266 (592)
Q Consensus 257 I~L~Lk~~~~ 266 (592)
|+|+++..|.
T Consensus 176 Vel~~~~~~~ 185 (538)
T COG1389 176 VELELKGVWY 185 (538)
T ss_pred EEEEecccch
Confidence 9999999764
No 14
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]
Probab=99.30 E-value=7.1e-12 Score=136.89 Aligned_cols=165 Identities=24% Similarity=0.324 Sum_probs=113.2
Q ss_pred HHHHHHHHHHccCCC-----chhhHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCC-cEEEEEeCCCCCC
Q 007698 89 VSRLMDLIVHSLYSH-----KEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPEN-GTITITDTGIGMT 162 (592)
Q Consensus 89 ~~~Ll~lL~~~LYs~-----~~vfLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~-~~L~I~DNGiGMt 162 (592)
+++|-+.++|.+..+ |.-+|+|||.|++|| ....|.|.+..++ +.|.|.|||.|+-
T Consensus 8 IrrLde~VVNRIAAGEVI~RP~NAlKEliENSLDA------------------~ST~I~V~vk~GGLKLlQisDnG~GI~ 69 (694)
T KOG1979|consen 8 IRRLDEDVVNRIAAGEVIQRPVNALKELIENSLDA------------------NSTSIDVLVKDGGLKLLQISDNGSGIR 69 (694)
T ss_pred hhcCcHHHHhHhhccchhhchHHHHHHHHhccccC------------------CCceEEEEEecCCeEEEEEecCCCccc
Confidence 556666666666654 888999999999999 4567888875554 6789999999999
Q ss_pred HHHHHHHHhhhhcccchhHHHHhhhcccCCCCCcccccccc---hhhhhhccccEEEEEEecCCCCceEEEEEecCCCce
Q 007698 163 KEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGV---GFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSSY 239 (592)
Q Consensus 163 ~eeL~~~L~tIa~Sgt~~f~~~l~~~~~~~~~~~~IGqFGI---Gf~S~F~VadkV~V~Sr~~~~~~~~~W~s~~~~~~y 239 (592)
++||.-...+.++|-=.+| .|...+..||+ .+-| ..-+.+|+|+|+.+++..+|+-.-. + |..
T Consensus 70 reDl~ilCeRftTSKL~kF-----------EDL~~lsTyGFRGEALAS-iShVA~VtV~TK~~~~~cayrasY~-D-Gkm 135 (694)
T KOG1979|consen 70 REDLPILCERFTTSKLTKF-----------EDLFSLSTYGFRGEALAS-ISHVAHVTVTTKTAEGKCAYRASYR-D-GKM 135 (694)
T ss_pred hhhhHHHHHHhhhhhcchh-----------HHHHhhhhcCccHHHHhh-hhheeEEEEEEeecCceeeeEEEee-c-ccc
Confidence 9999988888888832222 23344555555 4444 4444679999999765555544332 2 343
Q ss_pred EEeecCCCCccCCCCcEEEEE------------eecCCccCCCchhHHHHHHHHhhccCccc-eeecc
Q 007698 240 VIREETDPEKLLKRGTQITLY------------LKEDDKYEFSEPTRIQGLVKNYSQFVSFP-IYTWQ 294 (592)
Q Consensus 240 ~I~~~~~~~~~~~~GT~I~L~------------Lk~~~~~e~le~~~i~~lvk~ys~fl~~P-I~~~~ 294 (592)
.-.+.+. ....||.|++. |+.... || .+|-.+|.+|+ +-.| |.+..
T Consensus 136 ~~~pKpc---Agk~GT~I~vedLFYN~~~Rrkal~~~~E-E~---~ki~dlv~ryA--IHn~~VsFs~ 194 (694)
T KOG1979|consen 136 IATPKPC---AGKQGTIITVEDLFYNMPTRRKALRNHAE-EY---RKIMDLVGRYA--IHNPRVSFSL 194 (694)
T ss_pred ccCCCCc---cCCCceEEEehHhhccCHHHHHHhcCcHH-HH---HHHHHHHHHHh--eeCCCcceEE
Confidence 3222211 24689999998 555444 44 78999999999 6566 66543
No 15
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=99.26 E-value=4.9e-11 Score=132.84 Aligned_cols=157 Identities=27% Similarity=0.359 Sum_probs=101.4
Q ss_pred hhhHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeC---CCCcEEEEEeCCCCCCHHHHHHHHhhhhcccchhH
Q 007698 105 EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPD---PENGTITITDTGIGMTKEELVDCLGTIAQSGTSKF 181 (592)
Q Consensus 105 ~vfLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d---~~~~~L~I~DNGiGMt~eeL~~~L~tIa~Sgt~~f 181 (592)
..+|+|||+||+||++.... .+.+.|.+... .+...|+|+|||+||+.+++...|+.+-.+++ |
T Consensus 38 ~qVLkNLIeNAIDa~~~~gi-----------lp~I~I~I~~~~~~~~~~~I~V~DNG~GIp~e~l~~iF~~f~~~SK--~ 104 (535)
T PRK04184 38 YTTVKELVDNSLDACEEAGI-----------LPDIKIEIKRVDEGKDHYRVTVEDNGPGIPPEEIPKVFGKLLYGSK--F 104 (535)
T ss_pred HHHHHHHHHHHHHHhhhcCC-----------CceEEEEEEEccCCCcEEEEEEEcCCCCCCHHHHHHHhhhhhcccc--c
Confidence 45799999999999853210 12345555442 22357999999999999999988887633321 1
Q ss_pred HHHhhhcccCCCCCcccccccchhhhhhcccc-----EEEEEEecCCCCceEEEEEecC--CCceEEeecCCCCccCCCC
Q 007698 182 LKALKENNDLGADNGLIGQFGVGFYSAFLVAQ-----KVVVSTKSPRSDKQYVWEAEAD--SSSYVIREETDPEKLLKRG 254 (592)
Q Consensus 182 ~~~l~~~~~~~~~~~~IGqFGIGf~S~F~Vad-----kV~V~Sr~~~~~~~~~W~s~~~--~~~y~I~~~~~~~~~~~~G 254 (592)
. ......|++|+|+.++.+++. .+.|.|+..++..++.++...+ .+.-.+..........++|
T Consensus 105 ----~------~~~~s~G~~GLGLsiv~~isq~~~G~~I~V~S~~~~g~~~~~~~l~id~~kn~g~i~~~~~~~~~~~~G 174 (535)
T PRK04184 105 ----H------NLRQSRGQQGIGISAAVLYAQMTTGKPVRVISSTGGSKKAYYFELKIDTKKNEPIILEREEVDWDRWHG 174 (535)
T ss_pred ----c------ccccCCCCCCcchHHHHHHHHHhcCCcEEEEEecCCCceEEEEEEEecccccCCeeccccccCCCCCCC
Confidence 0 112356999999999988865 5899998754443555543211 1111111111001235799
Q ss_pred cEEEEEeecCCccCCCchhHHHHHHHHhhccCccc
Q 007698 255 TQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFP 289 (592)
Q Consensus 255 T~I~L~Lk~~~~~e~le~~~i~~lvk~ys~fl~~P 289 (592)
|+|.+.++.++. . ...+|.+++++++ +..|
T Consensus 175 T~V~V~l~~~~~-~--~~~~I~e~i~r~A--l~nP 204 (535)
T PRK04184 175 TRVELEIEGDWY-R--AKQRIYEYLKRTA--IVNP 204 (535)
T ss_pred EEEEEEECCcCh-h--hHHHHHHHHHHHH--HhCC
Confidence 999999988654 2 2578999999998 7777
No 16
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=99.20 E-value=9.5e-11 Score=133.43 Aligned_cols=155 Identities=23% Similarity=0.345 Sum_probs=101.7
Q ss_pred hhHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHHHHHHHHhhhhcccchhHHHHh
Q 007698 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKAL 185 (592)
Q Consensus 106 vfLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~L~tIa~Sgt~~f~~~l 185 (592)
.+|+|||.||+||+..-. ..+.+.|.|......-.|+|.|||+||+++++...|.+++.+++ |
T Consensus 49 tVLkNLIeNALDAs~~~g-----------ilp~I~V~Ie~~g~~v~I~VeDNG~GIp~EdLp~IFerf~~tSK--f---- 111 (795)
T PRK14868 49 TAVKEAVDNALDATEEAG-----------ILPDIYVEIEEVGDYYRLVVEDNGPGITKEQIPKVFGKLLYGSR--F---- 111 (795)
T ss_pred HHHHHHHHHHHHhCcccC-----------CCceEEEEEEECCCEEEEEEEEcCCCCCHHHHHHHhhhhccccc--c----
Confidence 478899999999963100 00134444443222347999999999999999999988875532 1
Q ss_pred hhcccCCCCCcccccccchhhhhhcccc-----EEEEEEecCCCCceEEEEE--ecCCCceEEeecCCCCccCCCCcEEE
Q 007698 186 KENNDLGADNGLIGQFGVGFYSAFLVAQ-----KVVVSTKSPRSDKQYVWEA--EADSSSYVIREETDPEKLLKRGTQIT 258 (592)
Q Consensus 186 ~~~~~~~~~~~~IGqFGIGf~S~F~Vad-----kV~V~Sr~~~~~~~~~W~s--~~~~~~y~I~~~~~~~~~~~~GT~I~ 258 (592)
. ......|+.|+|+.++.+++. .+.|.|+..+...++.|+. ..+.+...|..........++||+|+
T Consensus 112 ~------~~~~srG~rG~GLglai~~sqlt~GgpI~I~S~~~~~~~g~~~~L~Id~gkNep~I~~~~~~~~~~~~GT~Ie 185 (795)
T PRK14868 112 H------AREQSRGQQGIGISAAVLYSQLTSGKPAKITSRTQGSEEAQYFELIIDTDTNEPEISVEETTTWDRPHGTRIE 185 (795)
T ss_pred c------ccccCCCCCceehHHHHHHHHHcCCCcEEEEeCCCCCCceeEEEEEEecCCCccceecceecccCCCCceEEE
Confidence 1 111346899999999888875 3899999866556664543 33322223211000112357999999
Q ss_pred EEeecCCccCCCchhHHHHHHHHhhccCccc
Q 007698 259 LYLKEDDKYEFSEPTRIQGLVKNYSQFVSFP 289 (592)
Q Consensus 259 L~Lk~~~~~e~le~~~i~~lvk~ys~fl~~P 289 (592)
|.|..++. ...+|.+++++++ |..|
T Consensus 186 V~Lf~N~p----AR~kI~eyl~r~A--l~nP 210 (795)
T PRK14868 186 LEMEANMR----ARQQLHDYIKHTA--VVNP 210 (795)
T ss_pred EEEEccCc----hhhhHHHHHHHHH--hhCC
Confidence 99877543 3467999999998 7777
No 17
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=99.17 E-value=1.8e-10 Score=127.11 Aligned_cols=154 Identities=23% Similarity=0.258 Sum_probs=99.5
Q ss_pred hhHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCC-CcEEEEEeCCCCCCHHHHHHHHhhhhcccchhHHHH
Q 007698 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE-NGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKA 184 (592)
Q Consensus 106 vfLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~-~~~L~I~DNGiGMt~eeL~~~L~tIa~Sgt~~f~~~ 184 (592)
.+++|||.||+||++... ..+.+.|.+..... ...|+|.|||.||+.+++...+.+...+++ |
T Consensus 31 ~VlkELVeNAIDA~~~~g-----------~~p~I~V~i~~~g~~~~~I~V~DNG~GIp~edl~~iF~rf~~tsK--~--- 94 (488)
T TIGR01052 31 TVIHELVTNSLDACEEAG-----------ILPDIKVEIEKIGKDHYKVTVEDNGPGIPEEYIPKVFGKMLAGSK--F--- 94 (488)
T ss_pred HHHHHHHHHHHHHhhccC-----------CCceEEEEEEECCCceEEEEEEECCCCCCHHHHHhhhhhccccCc--c---
Confidence 488999999999974211 01234444443222 237999999999999999988887544322 1
Q ss_pred hhhcccCCCCCcccccccchhhhhhcccc-----EEEEEEecCCCCceEEEEEecC----CCce-EEeecCCCCccCCCC
Q 007698 185 LKENNDLGADNGLIGQFGVGFYSAFLVAQ-----KVVVSTKSPRSDKQYVWEAEAD----SSSY-VIREETDPEKLLKRG 254 (592)
Q Consensus 185 l~~~~~~~~~~~~IGqFGIGf~S~F~Vad-----kV~V~Sr~~~~~~~~~W~s~~~----~~~y-~I~~~~~~~~~~~~G 254 (592)
. ......|++|+|+.++.+++. .++|.|+..+...++..+...+ .+.. ...+... ..++|
T Consensus 95 -~------~~~~s~G~~GlGLs~~~~isq~~~G~~i~V~S~~~g~~~~~~~~~~id~~~n~G~i~~~~~~~~---~~~~G 164 (488)
T TIGR01052 95 -H------RIIQSRGQQGIGISGAVLYSQMTTGKPVKVISSTGGEIYVYKMKLKIDVQKNEGEIVEKGEWNK---PGWRG 164 (488)
T ss_pred -c------cccccCCCccEehhHHHHHHHHcCCceEEEEEecCCceEEEEEEEEecccccCCeecceeecCC---CCCCc
Confidence 1 123456999999999988876 3999999875544555554211 1221 1122211 12479
Q ss_pred cEEEEEeecCCccCCCchhHHHHHHHHhhccCccc
Q 007698 255 TQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFP 289 (592)
Q Consensus 255 T~I~L~Lk~~~~~e~le~~~i~~lvk~ys~fl~~P 289 (592)
|+|++.....+. .+ ...+|.+++++++ +..|
T Consensus 165 T~V~v~f~~~~~-r~-~k~~i~e~l~~~A--l~nP 195 (488)
T TIGR01052 165 TRIELEFKGVSY-RR-SKQGVYEYLRRTA--VANP 195 (488)
T ss_pred eEEEEEECCcee-ec-cHHHHHHHHHHHH--hhCC
Confidence 999999655433 21 3478999999999 7777
No 18
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=99.00 E-value=5.6e-09 Score=118.66 Aligned_cols=154 Identities=21% Similarity=0.266 Sum_probs=93.6
Q ss_pred hhHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCC-CcEEEEEeCCCCCCHHHHHHHHhhh-hcccchhHHH
Q 007698 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE-NGTITITDTGIGMTKEELVDCLGTI-AQSGTSKFLK 183 (592)
Q Consensus 106 vfLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~-~~~L~I~DNGiGMt~eeL~~~L~tI-a~Sgt~~f~~ 183 (592)
..++|||.||+||+.... ..+.+.|.+..... .-.|+|.|||.||+++++...+.+. ++|
T Consensus 39 ~VVkELVeNAIDA~~~~g-----------~~p~I~V~I~~~g~~~~~I~V~DNG~GIp~e~l~~iFerF~atS------- 100 (659)
T PRK14867 39 TIIHELVTNSLDACEEAE-----------ILPDIKVEIEKLGSDHYKVAVEDNGPGIPPEFVPKVFGKMLAGS------- 100 (659)
T ss_pred HHHHHHHHHHHHHhhccC-----------CCceEEEEEEECCCcEEEEEEEeeCeeCCHHHHhhhhccccccC-------
Confidence 478999999999974211 01234455443222 2359999999999999999988873 333
Q ss_pred HhhhcccCCCCCcccccccchhhhhhccccE-----EEEEEecCCCCceE--EEEEec--CCCceEEeecCCCCccCCCC
Q 007698 184 ALKENNDLGADNGLIGQFGVGFYSAFLVAQK-----VVVSTKSPRSDKQY--VWEAEA--DSSSYVIREETDPEKLLKRG 254 (592)
Q Consensus 184 ~l~~~~~~~~~~~~IGqFGIGf~S~F~Vadk-----V~V~Sr~~~~~~~~--~W~s~~--~~~~y~I~~~~~~~~~~~~G 254 (592)
++. .-....|+.|+|+.++.++++. +.|.|+.. .+..+ .|...- .++... .... ....++|
T Consensus 101 K~~------~~~qS~G~rG~GLa~a~~vsql~~G~pI~I~S~~g-~G~~f~i~L~i~i~~n~G~I~-~~~~--~~~~~~G 170 (659)
T PRK14867 101 KMH------RLIQSRGQQGIGAAGVLLFSQITTGKPLKITTSTG-DGKIHEMEIKMSVEKNEGDIV-SHKV--REGFWRG 170 (659)
T ss_pred ccc------ceeccCCCCcccHHHHHHHHHHhcCCcEEEEEEcC-CCEEEEEEEEEEecccCCeec-cccc--CCCCCCC
Confidence 111 1124468999999888776654 58888763 33322 222221 112221 1101 1125799
Q ss_pred cEEEEEeecCCccCCCc-hhHHHHHHHHhhccCccc-eee
Q 007698 255 TQITLYLKEDDKYEFSE-PTRIQGLVKNYSQFVSFP-IYT 292 (592)
Q Consensus 255 T~I~L~Lk~~~~~e~le-~~~i~~lvk~ys~fl~~P-I~~ 292 (592)
|+|++.+++- -|.. +..+.+++++++ +.+| |.+
T Consensus 171 T~Ie~~V~dL---FynR~E~~i~e~l~r~A--LanP~i~f 205 (659)
T PRK14867 171 TRVEGEFKEV---TYNRREQGPFEYLRRIS--LSTPHAKI 205 (659)
T ss_pred cEEEEEEeec---eechhhHHHHHHHHHHH--HhCCCcEE
Confidence 9999776651 1111 234899999999 8888 554
No 19
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=98.79 E-value=1.9e-08 Score=114.86 Aligned_cols=155 Identities=15% Similarity=0.108 Sum_probs=97.7
Q ss_pred chhhHHhhhhcHHh-HHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHHH--------HHHHHh-hh
Q 007698 104 KEVFLRELVSNASD-ALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEE--------LVDCLG-TI 173 (592)
Q Consensus 104 ~~vfLRELIqNA~D-A~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~ee--------L~~~L~-tI 173 (592)
+...|+|||.||+| |++ +..-.|.|.++.+ +.|+|.|||.||+.++ +.-.|+ .+
T Consensus 31 ~~~lv~ElvdNsiDE~~a---------------g~a~~I~V~i~~d-~~I~V~DnGrGIp~~~h~~~g~~~~e~v~t~lh 94 (625)
T TIGR01055 31 PNHLVQEVIDNSVDEALA---------------GFASIIMVILHQD-QSIEVFDNGRGMPVDIHPKEGVSAVEVILTTLH 94 (625)
T ss_pred cceeehhhhhcccchhhc---------------CCCCEEEEEEeCC-CeEEEEecCCccCcccccccCCcHHHHhhhccc
Confidence 56799999999999 210 1234577766655 7999999999999988 666663 33
Q ss_pred hcccchhHHHHhhhcccCCCCCcccccccchhhhhhccccEEEEEEecCCCCceEEEEEecCCCce--EEeecCCCCccC
Q 007698 174 AQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSSY--VIREETDPEKLL 251 (592)
Q Consensus 174 a~Sgt~~f~~~l~~~~~~~~~~~~IGqFGIGf~S~F~VadkV~V~Sr~~~~~~~~~W~s~~~~~~y--~I~~~~~~~~~~ 251 (592)
|.| ++.. ..-....|.-|+|..++-.++.+++|.|++.+.. |.++...| .. .+.... +....
T Consensus 95 ags-------K~~~----~~~~~SgG~~GvGls~vnalS~~l~v~~~r~g~~--~~~~~~~G--~~~~~~~~i~-~~~~~ 158 (625)
T TIGR01055 95 AGG-------KFSN----KNYHFSGGLHGVGISVVNALSKRVKIKVYRQGKL--YSIAFENG--AKVTDLISAG-TCGKR 158 (625)
T ss_pred ccC-------CCCC----CcceecCCCcchhHHHHHHhcCeEEEEEEECCeE--EEEEEECC--eEcccccccc-ccCCC
Confidence 433 2221 1122568999999999999999999999975432 44444322 21 111110 10013
Q ss_pred CCCcEEEEEeecCCc-cCCCchhHHHHHHHHhhccCccc-eee
Q 007698 252 KRGTQITLYLKEDDK-YEFSEPTRIQGLVKNYSQFVSFP-IYT 292 (592)
Q Consensus 252 ~~GT~I~L~Lk~~~~-~e~le~~~i~~lvk~ys~fl~~P-I~~ 292 (592)
..||+|++.....-- ..-.+..+|.+++++++ +.+| |.+
T Consensus 159 ~~GT~V~F~PD~~~F~~~~~e~~~i~~~l~~lA--~lnpgi~~ 199 (625)
T TIGR01055 159 LTGTSVHFTPDPEIFDSLHFSVSRLYHILRAKA--VLCRGVEI 199 (625)
T ss_pred CCCeEEEEEECHHHCCCCccCHHHHHHHHHHHH--hhCCCcEE
Confidence 589999986332100 01134578999999998 5556 443
No 20
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair]
Probab=98.70 E-value=3.4e-08 Score=110.80 Aligned_cols=158 Identities=23% Similarity=0.266 Sum_probs=98.3
Q ss_pred HHHHccCCCchhhHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCC-CCcEEEEEeCCCCCCHHHHHHHHhhh
Q 007698 95 LIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDP-ENGTITITDTGIGMTKEELVDCLGTI 173 (592)
Q Consensus 95 lL~~~LYs~~~vfLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~-~~~~L~I~DNGiGMt~eeL~~~L~tI 173 (592)
|-..+...+..++|+|||.||+|| ++..|+|.++. +-..|.|.|||.|+++.+..-.-..+
T Consensus 12 I~S~qvI~sl~sAVKELvENSiDA------------------GAT~I~I~~kdyG~d~IEV~DNG~GI~~~n~~~l~lkh 73 (672)
T KOG1978|consen 12 ICSSQVITSLVSAVKELVENSIDA------------------GATAIDIKVKDYGSDSIEVSDNGSGISATDFEGLALKH 73 (672)
T ss_pred cccCCeeccHHHHHHHHHhcCccc------------------CCceeeEecCCCCcceEEEecCCCCCCccchhhhhhhh
Confidence 334455566778999999999999 34567776644 34689999999999999987533344
Q ss_pred hcccchhHHHHhhhcccCCCCCcccccccchhhhhhccccEEEEEEecCCCCceEEEEEecCCCceEEeecCCCCccCCC
Q 007698 174 AQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSSYVIREETDPEKLLKR 253 (592)
Q Consensus 174 a~Sgt~~f~~~l~~~~~~~~~~~~IGqFGIGf~S~F~VadkV~V~Sr~~~~~~~~~W~s~~~~~~y~I~~~~~~~~~~~~ 253 (592)
-+|.-.+|- |. ....-.|..|=.+-|.-.+|+ |.|.|++..+..|..|.-+..+.--...+.+ .++
T Consensus 74 ~TSKi~~f~-------Dl-~~l~T~GFRGEALSsLCa~~d-v~I~Trt~~~~vgt~l~~Dh~G~I~~k~~~a-----r~~ 139 (672)
T KOG1978|consen 74 TTSKIVSFA-------DL-AVLFTLGFRGEALSSLCALGD-VMISTRSHSAKVGTRLVYDHDGHIIQKKPVA-----RGR 139 (672)
T ss_pred hhhcccchh-------hh-hhhhhhhhHHHHHHhhhhccc-eEEEEeeccCccceeEEEccCCceeeecccc-----CCC
Confidence 444322221 10 112235555556644455655 8888998756678888876433222234443 579
Q ss_pred CcEEEEE-eecCC----ccCCC-----chhHHHHHHHHhhcc
Q 007698 254 GTQITLY-LKEDD----KYEFS-----EPTRIQGLVKNYSQF 285 (592)
Q Consensus 254 GT~I~L~-Lk~~~----~~e~l-----e~~~i~~lvk~ys~f 285 (592)
||+|.+. |-... . +|- +-.++..++..|+-+
T Consensus 140 GTTV~v~~LF~tLPVR~k-ef~r~~Kref~k~i~li~~y~li 180 (672)
T KOG1978|consen 140 GTTVMVRQLFSTLPVRRK-EFQRNIKRKFVKLISLIQAYALI 180 (672)
T ss_pred CCEEEHhhhcccCCCchH-HhhcchhhhhhhHHhhHHHHHhh
Confidence 9999998 11110 1 111 125678888888733
No 21
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=98.68 E-value=7e-08 Score=110.54 Aligned_cols=155 Identities=17% Similarity=0.231 Sum_probs=98.2
Q ss_pred chhhHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHHHHHH--------HHhhhhc
Q 007698 104 KEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVD--------CLGTIAQ 175 (592)
Q Consensus 104 ~~vfLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~--------~L~tIa~ 175 (592)
+...|+|||.||+|++.. .....|.|.++.+ +.|+|+|||.||+.+.... .|+++-.
T Consensus 38 l~~lv~EivdNaiDe~~a--------------g~a~~I~V~i~~d-g~I~V~DnGrGIP~~~~~~~~~~~~E~v~t~lha 102 (631)
T PRK05559 38 LHHLVQEVIDNSVDEALA--------------GHGKRIEVTLHAD-GSVSVRDNGRGIPVGIHPEEGKSGVEVILTKLHA 102 (631)
T ss_pred hhhhhhhhhccccchhhc--------------CCCCEEEEEEeCC-CcEEEEEcCCCCCcccccccCCcchheeeeeccc
Confidence 456899999999999621 1234566666555 4899999999999998876 6666322
Q ss_pred ccchhHHHHhhhcccCCCCCcccccccchhhhhhccccEEEEEEecCCCCceEEEEEecCCCceEEeecCCCCccCCCCc
Q 007698 176 SGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSSYVIREETDPEKLLKRGT 255 (592)
Q Consensus 176 Sgt~~f~~~l~~~~~~~~~~~~IGqFGIGf~S~F~VadkV~V~Sr~~~~~~~~~W~s~~~~~~y~I~~~~~~~~~~~~GT 255 (592)
+|+ | .. ......-|..|+|..++-.++.+++|.|++.+. .|.++...|...-.+.... +.....+||
T Consensus 103 gsK--f----~~----~~yk~SgGl~GvGls~vNalS~~l~V~s~r~g~--~~~~~f~~G~~~~~l~~~~-~~~~~~~GT 169 (631)
T PRK05559 103 GGK--F----SN----KAYKFSGGLHGVGVSVVNALSSRLEVEVKRDGK--VYRQRFEGGDPVGPLEVVG-TAGKRKTGT 169 (631)
T ss_pred cCc--c----CC----ccccccCcccccchhhhhhheeeEEEEEEeCCe--EEEEEEECCcCccCccccc-cccCCCCCc
Confidence 322 1 11 112256899999999999999999999997542 2443333221111111111 000146899
Q ss_pred EEEEEeecCC--ccCCCchhHHHHHHHHhhccCccc
Q 007698 256 QITLYLKEDD--KYEFSEPTRIQGLVKNYSQFVSFP 289 (592)
Q Consensus 256 ~I~L~Lk~~~--~~e~le~~~i~~lvk~ys~fl~~P 289 (592)
+|++...... . .-.+...|.+.+++++ +.+|
T Consensus 170 ~V~f~PD~~iF~~-~~~~~~~i~~~l~~~A--~lnp 202 (631)
T PRK05559 170 RVRFWPDPKIFDS-PKFSPERLKERLRSKA--FLLP 202 (631)
T ss_pred EEEEEECHHHcCC-cccCHHHHHHHHHHHH--hhCC
Confidence 9999743211 0 1235677899999998 4455
No 22
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=98.63 E-value=5.2e-08 Score=110.95 Aligned_cols=153 Identities=20% Similarity=0.218 Sum_probs=91.5
Q ss_pred hHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHHHHH-------HHHhhhhcccch
Q 007698 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELV-------DCLGTIAQSGTS 179 (592)
Q Consensus 107 fLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~-------~~L~tIa~Sgt~ 179 (592)
.|+|||.||+||..+ +....|.|.++.++ .|+|+|||.||+.+... +.+.++-..|.
T Consensus 5 ~v~ElvdNAiD~~~~--------------g~at~I~V~i~~~g-~I~V~DnG~GIp~~~h~~~~~~~~e~v~~~lhag~- 68 (594)
T smart00433 5 LVDEIVDNAADEALA--------------GYMDTIKVTIDKDN-SISVEDNGRGIPVEIHPKEKKYAPEVIFTVLHAGG- 68 (594)
T ss_pred EEeeehhcccchhcc--------------CCCCEEEEEEeCCC-eEEEEEeCCceeCCccCcCCCCcHHHhhhhhcccC-
Confidence 689999999999521 12346777766654 99999999999953321 11122222221
Q ss_pred hHHHHhhhcccCCCCCcccccccchhhhhhccccEEEEEEecCCCCceEEEEEecCCCceEEeecCCCCccCCCCcEEEE
Q 007698 180 KFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSSYVIREETDPEKLLKRGTQITL 259 (592)
Q Consensus 180 ~f~~~l~~~~~~~~~~~~IGqFGIGf~S~F~VadkV~V~Sr~~~~~~~~~W~s~~~~~~y~I~~~~~~~~~~~~GT~I~L 259 (592)
+| . .......-|.-|+|..++-.++.+++|.|+..+. .|.+....+ +.. +.+..........||+|+.
T Consensus 69 kf----d----~~~~k~s~G~~G~Gls~vnalS~~l~v~~~~~g~--~~~~~~~~~-G~~-~~~~~~~~~~~~~GT~V~F 136 (594)
T smart00433 69 KF----D----DDAYKVSGGLHGVGASVVNALSTEFEVEVARDGK--EYKQSFSNN-GKP-LSEPKIIGDTKKDGTKVTF 136 (594)
T ss_pred CC----C----CCCccccCCcccchHHHHHHhcCceEEEEEeCCc--EEEEEEeCC-CeE-CccceecCCCCCCCcEEEE
Confidence 11 1 1122346899999999999999999999998643 344333221 111 1111000112468999996
Q ss_pred EeecCCccCCC-----chhHHHHHHHHhhccCccc-eee
Q 007698 260 YLKEDDKYEFS-----EPTRIQGLVKNYSQFVSFP-IYT 292 (592)
Q Consensus 260 ~Lk~~~~~e~l-----e~~~i~~lvk~ys~fl~~P-I~~ 292 (592)
. ++.. .|. +...|.+.++.++ +.+| |.+
T Consensus 137 ~--Pd~~-~F~~~~~~~~~~i~~rl~~~A--~l~pgl~i 170 (594)
T smart00433 137 K--PDLE-IFGMTTDDDFELLKRRLRELA--FLNKGVKI 170 (594)
T ss_pred E--ECHH-HhCCcccchHHHHHHHHHHHH--hcCCCcEE
Confidence 4 4333 332 3367888899998 5556 444
No 23
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=98.61 E-value=1.5e-07 Score=107.89 Aligned_cols=153 Identities=21% Similarity=0.197 Sum_probs=92.7
Q ss_pred hhHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHHHHH-------HHHhhhhcccc
Q 007698 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELV-------DCLGTIAQSGT 178 (592)
Q Consensus 106 vfLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~-------~~L~tIa~Sgt 178 (592)
..|+|||.||+|-.. .+....|.|.++.+ +.|+|+|||.||+.+.-. +.+.++-.+|.
T Consensus 40 ~~v~ElvdNaiDe~~--------------ag~a~~I~V~i~~~-g~I~V~DnG~GIp~~~h~~~ki~~~e~i~~~lhag~ 104 (638)
T PRK05644 40 HLVYEIVDNSIDEAL--------------AGYCDHIEVTINED-GSITVTDNGRGIPVDIHPKTGKPAVEVVLTVLHAGG 104 (638)
T ss_pred hhhHHhhhccccccc--------------CCCCCEEEEEEeCC-CcEEEEEeCccccCCccCCCCCCchHHheeeecccC
Confidence 478999999999420 01134677776654 599999999999986211 11222222221
Q ss_pred hhHHHHhhhcccCCCCCcccccccchhhhhhccccEEEEEEecCCCCceEEEEEecCCCceEEeecCCCCccCCCCcEEE
Q 007698 179 SKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSSYVIREETDPEKLLKRGTQIT 258 (592)
Q Consensus 179 ~~f~~~l~~~~~~~~~~~~IGqFGIGf~S~F~VadkV~V~Sr~~~~~~~~~W~s~~~~~~y~I~~~~~~~~~~~~GT~I~ 258 (592)
+| . ........|..|+|..++-.++++++|.|++.+. +|......| ... .+........+.||+|+
T Consensus 105 -kf----d----~~~yk~s~G~~G~Gls~vnalS~~~~v~t~r~g~--~~~~~~~~G--~~~-~~~~~~~~~~~~GT~I~ 170 (638)
T PRK05644 105 -KF----G----GGGYKVSGGLHGVGVSVVNALSTWLEVEVKRDGK--IYYQEYERG--VPV-TPLEVIGETDETGTTVT 170 (638)
T ss_pred -cc----C----CCcccccCCccccchhhhhheeceEEEEEEeCCc--EEEEEEECC--eEc-cCccccCCcCCCCcEEE
Confidence 11 1 1112236899999999999999999999997543 554444432 211 11111111246899999
Q ss_pred EEeecCCccCC----CchhHHHHHHHHhhccCccc-eee
Q 007698 259 LYLKEDDKYEF----SEPTRIQGLVKNYSQFVSFP-IYT 292 (592)
Q Consensus 259 L~Lk~~~~~e~----le~~~i~~lvk~ys~fl~~P-I~~ 292 (592)
.. ++.. -| ++...|.+.++.++ +.+| |.+
T Consensus 171 F~--Pd~~-~F~~~~~e~~~i~~rl~~~A--~l~pgl~i 204 (638)
T PRK05644 171 FK--PDPE-IFETTEFDYDTLATRLRELA--FLNKGLKI 204 (638)
T ss_pred EE--ECHH-HcCCcccCHHHHHHHHHHHH--hhCCCcEE
Confidence 64 3332 22 35678999999998 4455 444
No 24
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=98.61 E-value=1.6e-07 Score=108.18 Aligned_cols=153 Identities=17% Similarity=0.168 Sum_probs=91.6
Q ss_pred hhHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHHHH-------HHHHhhhhcccc
Q 007698 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEEL-------VDCLGTIAQSGT 178 (592)
Q Consensus 106 vfLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL-------~~~L~tIa~Sgt 178 (592)
..|+|||.||+|-.. .+....|.|.++.+ +.|+|+|||.||+.+-- .+.+.++-.+|.
T Consensus 33 ~vv~Elv~NaiDe~~--------------ag~a~~I~V~i~~~-g~I~V~DnG~GIp~~~h~~~ki~~~e~i~~~l~ag~ 97 (654)
T TIGR01059 33 HLVYEVVDNSIDEAM--------------AGYCDTINVTINDD-GSVTVEDNGRGIPVDIHPEEGISAVEVVLTVLHAGG 97 (654)
T ss_pred hhhHHhhhccccccc--------------cCCCCEEEEEEeCC-CcEEEEEeCCCcCccccCcCCCCchHHheeeecccC
Confidence 478999999999320 01134566666654 46999999999998610 011122212221
Q ss_pred hhHHHHhhhcccCCCCCcccccccchhhhhhccccEEEEEEecCCCCceEEEEEecCCCceEEeecCCCCccCCCCcEEE
Q 007698 179 SKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSSYVIREETDPEKLLKRGTQIT 258 (592)
Q Consensus 179 ~~f~~~l~~~~~~~~~~~~IGqFGIGf~S~F~VadkV~V~Sr~~~~~~~~~W~s~~~~~~y~I~~~~~~~~~~~~GT~I~ 258 (592)
+ | . ........|.-|+|..|+-.++.+++|.|++.+.. |..+...| ... .+........+.||+|+
T Consensus 98 k-f----~----~~~~k~s~G~~G~gl~~inalS~~l~v~~~~~g~~--~~~~~~~G--~~~-~~l~~~~~~~~~GT~V~ 163 (654)
T TIGR01059 98 K-F----D----KDSYKVSGGLHGVGVSVVNALSEWLEVTVFRDGKI--YRQEFERG--IPL-GPLEVVGETKKTGTTVR 163 (654)
T ss_pred c-c----C----CCcceecCCccchhHHHHHHhcCeEEEEEEECCeE--EEEEEeCC--Ccc-cCceeccCCCCCCcEEE
Confidence 1 1 1 11223468999999999999999999999985433 44333332 211 11000011257899999
Q ss_pred EEeecCCccCC----CchhHHHHHHHHhhccCccc-eee
Q 007698 259 LYLKEDDKYEF----SEPTRIQGLVKNYSQFVSFP-IYT 292 (592)
Q Consensus 259 L~Lk~~~~~e~----le~~~i~~lvk~ys~fl~~P-I~~ 292 (592)
....+ . .| .+...|.+.++.++ +.+| |.+
T Consensus 164 F~pdp--~-~F~~~~~e~~~i~~rl~~~A--~l~pgl~i 197 (654)
T TIGR01059 164 FWPDP--E-IFETTEFDFDILAKRLRELA--FLNSGVKI 197 (654)
T ss_pred EEECh--H-HhCCcccCHHHHHHHHHHhh--ccCCCeEE
Confidence 65332 2 23 35678999999999 5566 544
No 25
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=98.55 E-value=4.2e-07 Score=80.07 Aligned_cols=80 Identities=29% Similarity=0.480 Sum_probs=59.6
Q ss_pred hhHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHHHHHHHHhhhhcccchhHHHHh
Q 007698 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKAL 185 (592)
Q Consensus 106 vfLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~L~tIa~Sgt~~f~~~l 185 (592)
.+|.||++||+|+... ...+.|.+..+.+.-.|+|.|||.||+.+++...+.....+.
T Consensus 8 ~il~~ll~Na~~~~~~--------------~~~I~i~~~~~~~~~~i~i~d~G~gi~~~~l~~~~~~~~~~~-------- 65 (111)
T PF02518_consen 8 QILSELLDNAIKHSPE--------------GGKIDITIEEDDDHLSIEISDNGVGIPPEELEKLFEPFFTSD-------- 65 (111)
T ss_dssp HHHHHHHHHHHHHHHH--------------TSEEEEEEEEETTEEEEEEEESSSSTTHHHHHHHCSTTSHSS--------
T ss_pred HHHHHHHHHHHHHhcC--------------CCEEEEEEEEecCeEEEEEEeccccccccccccchhhccccc--------
Confidence 4789999999999742 134566666666677899999999999999987655433221
Q ss_pred hhcccCCCCCcccccccchhhhhhccccE
Q 007698 186 KENNDLGADNGLIGQFGVGFYSAFLVAQK 214 (592)
Q Consensus 186 ~~~~~~~~~~~~IGqFGIGf~S~F~Vadk 214 (592)
.+....+.+|+|++.+-.++++
T Consensus 66 -------~~~~~~~g~GlGL~~~~~~~~~ 87 (111)
T PF02518_consen 66 -------KSETSISGHGLGLYIVKQIAER 87 (111)
T ss_dssp -------SSSGGSSSSSHHHHHHHHHHHH
T ss_pred -------ccccccCCCChHHHHHHHHHHH
Confidence 1334577799999999998774
No 26
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=98.45 E-value=5.4e-07 Score=104.56 Aligned_cols=145 Identities=17% Similarity=0.252 Sum_probs=89.3
Q ss_pred hhhHHhhhhcHHh-HHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHH----------HHHHHHhhh
Q 007698 105 EVFLRELVSNASD-ALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKE----------ELVDCLGTI 173 (592)
Q Consensus 105 ~vfLRELIqNA~D-A~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~e----------eL~~~L~tI 173 (592)
...|+|||.||+| |++ +..-.|+|.++.+ +.|+|+|||.||+.+ |+. |. .
T Consensus 39 hhlv~EivdNaiDE~~A---------------G~a~~I~V~i~~d-gsIsV~DnGrGIPvd~h~~~g~~~~Elv--lt-~ 99 (756)
T PRK14939 39 HHMVYEVVDNAIDEALA---------------GHCDDITVTIHAD-GSVSVSDNGRGIPTDIHPEEGVSAAEVI--MT-V 99 (756)
T ss_pred hhhhhHhhccccccccc---------------CCCCEEEEEEcCC-CeEEEEEcCCcccCCcccccCCchhhhe--ee-e
Confidence 3589999999999 210 1234577777654 599999999999997 554 22 2
Q ss_pred hcccchhHHHHhhhcccCCCCCcccccccchhhhhhccccEEEEEEecCCCCceEEEEEecCCCceEEeecCCCCccCCC
Q 007698 174 AQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSSYVIREETDPEKLLKR 253 (592)
Q Consensus 174 a~Sgt~~f~~~l~~~~~~~~~~~~IGqFGIGf~S~F~VadkV~V~Sr~~~~~~~~~W~s~~~~~~y~I~~~~~~~~~~~~ 253 (592)
-.+|. +| .. ..-.-.-|.-|+|..++-.++++++|.|++.+. .|..+-..|...-.+.... ...++
T Consensus 100 lhAgg-Kf----d~----~~ykvSgGlhGvG~svvNAlS~~l~v~v~r~gk--~~~q~f~~G~~~~~l~~~g---~~~~~ 165 (756)
T PRK14939 100 LHAGG-KF----DQ----NSYKVSGGLHGVGVSVVNALSEWLELTIRRDGK--IHEQEFEHGVPVAPLKVVG---ETDKT 165 (756)
T ss_pred ecccC-CC----CC----CcccccCCccCccceEeehccCeEEEEEEeCCe--EEEEEEecCccccCccccC---CcCCC
Confidence 22222 12 11 111225799999999999999999999997543 2433333221110012111 12468
Q ss_pred CcEEEEEeecCC--ccCCCchhHHHHHHHHhh
Q 007698 254 GTQITLYLKEDD--KYEFSEPTRIQGLVKNYS 283 (592)
Q Consensus 254 GT~I~L~Lk~~~--~~e~le~~~i~~lvk~ys 283 (592)
||+|+......- . .-.+...|.+.++.++
T Consensus 166 GT~V~F~PD~~iF~~-~~~~~~~i~~rl~elA 196 (756)
T PRK14939 166 GTEVRFWPSPEIFEN-TEFDYDILAKRLRELA 196 (756)
T ss_pred CcEEEEEECHHHcCC-cccCHHHHHHHHHHHh
Confidence 999999632210 1 1235578888899988
No 27
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair]
Probab=98.03 E-value=4.5e-06 Score=93.75 Aligned_cols=157 Identities=21% Similarity=0.199 Sum_probs=91.5
Q ss_pred hhhHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHHHHHHHHhhhhcccchhHHHH
Q 007698 105 EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKA 184 (592)
Q Consensus 105 ~vfLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~L~tIa~Sgt~~f~~~ 184 (592)
..+|+||+.|++|| .+..|.|.++-..-.+.|.|||+||+++||...=.+.++| +
T Consensus 23 a~~VeElv~NSiDA------------------~At~V~v~V~~~t~sv~ViDdG~G~~rdDl~~lg~ry~TS-------K 77 (1142)
T KOG1977|consen 23 AQCVEELVLNSIDA------------------EATCVAVRVNMETFSVQVIDDGFGMGRDDLEKLGNRYFTS-------K 77 (1142)
T ss_pred HHHHHHHHhhcccc------------------CceEEEEEecCceeEEEEEecCCCccHHHHHHHHhhhhhh-------h
Confidence 45899999999999 3455666666777899999999999999997432233333 2
Q ss_pred hhhcccCCCCCcccccccchhhhhhccccEEEEEEecCCCCceEEEE-EecCCCceEEeecCCCCccCCCCcEEEEE---
Q 007698 185 LKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWE-AEADSSSYVIREETDPEKLLKRGTQITLY--- 260 (592)
Q Consensus 185 l~~~~~~~~~~~~IGqFGIGf~S~F~VadkV~V~Sr~~~~~~~~~W~-s~~~~~~y~I~~~~~~~~~~~~GT~I~L~--- 260 (592)
....++ .......|..|-.++|+-=++. ++|+|++.+-..+|... ...| .....-+.+. .....||+|+++
T Consensus 78 ~h~~nd-l~~~~tyGfRGeALasIsd~s~-l~v~skkk~r~~~~~~kk~~~g-s~~~~l~iD~--~R~~sGTtVtV~dlf 152 (1142)
T KOG1977|consen 78 CHSVND-LENPRTYGFRGEALASISDMSS-LVVISKKKNRTMKTFVKKFQSG-SALKALEIDV--TRASSGTTVTVYDLF 152 (1142)
T ss_pred ceeccc-cccccccccchhhhhhhhhhhh-hhhhhhhcCCchhHHHHHHhcc-ccceeccccc--ccccCCcEEEeHHhh
Confidence 221111 1233457777777877766654 66777776555544311 1112 2222222211 124689999998
Q ss_pred ----eecCCc--cCCCchhHHHHHHHHhhccCccc-eeec
Q 007698 261 ----LKEDDK--YEFSEPTRIQGLVKNYSQFVSFP-IYTW 293 (592)
Q Consensus 261 ----Lk~~~~--~e~le~~~i~~lvk~ys~fl~~P-I~~~ 293 (592)
++.... ....+-++|+.-|...+ |-+| |.+.
T Consensus 153 Y~lPVRRr~k~~~P~k~fe~Ik~~i~~i~--lmHp~iSfs 190 (1142)
T KOG1977|consen 153 YQLPVRRRLKCMDPRKEFEKIKQRIEAIS--LMHPSISFS 190 (1142)
T ss_pred hcchhhhhhhcCCHHHHHHHHHHHHHHHH--hhccceeEE
Confidence 222110 01222355666666666 5566 5554
No 28
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=97.51 E-value=0.00026 Score=81.60 Aligned_cols=150 Identities=19% Similarity=0.180 Sum_probs=85.6
Q ss_pred hhHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHHHH-------HHHHhhhhcccc
Q 007698 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEEL-------VDCLGTIAQSGT 178 (592)
Q Consensus 106 vfLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL-------~~~L~tIa~Sgt 178 (592)
..+.|+|.||+|=.- .+..-.|.|.+++ ++.|+|.|||.||+-+-- .+.+.++..+|.
T Consensus 37 hlv~EIvdNavDE~~--------------ag~~~~I~V~i~~-dgsitV~DnGrGIPv~~h~~~~~~~~E~v~t~LhaGg 101 (637)
T TIGR01058 37 HLVWEIVDNSVDEVL--------------AGYADNITVTLHK-DNSITVQDDGRGIPTGIHQDGNISTVETVFTVLHAGG 101 (637)
T ss_pred eehhhhhcchhhhhh--------------cCCCcEEEEEEcC-CCeEEEEECCCcccCcccCcCCCccceeEEEEecccC
Confidence 367799999999421 0123457777764 469999999999986321 111112222221
Q ss_pred hhHHHHhhhcccCCCCCcccccccchhhhhhccccEEEEEEecCCCCceEEEEEecCCCceEEeecCCCCccCCCCcEEE
Q 007698 179 SKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSSYVIREETDPEKLLKRGTQIT 258 (592)
Q Consensus 179 ~~f~~~l~~~~~~~~~~~~IGqFGIGf~S~F~VadkV~V~Sr~~~~~~~~~W~s~~~~~~y~I~~~~~~~~~~~~GT~I~ 258 (592)
+ | . ...-.-.-|.-|+|...+=.++++++|.+++.+..-...|+. | +. .+.+.........+||+|+
T Consensus 102 k-f----d----~~~ykvSGGlhGvG~svvNAlS~~~~V~v~r~gk~~~q~f~~--G-g~-~~~~l~~~~~~~~~GT~V~ 168 (637)
T TIGR01058 102 K-F----D----QGGYKTAGGLHGVGASVVNALSSWLEVTVKRDGQIYQQRFEN--G-GK-IVQSLKKIGTTKKTGTLVH 168 (637)
T ss_pred c-C----C----CCcccccCCcccccccccceeeceEEEEEEECCEEEEEEEec--C-Cc-CcCCcccccCCCCCceEEE
Confidence 1 1 1 111123469999999999999999999998754222224432 1 11 1111111111246899998
Q ss_pred EEeecCCc-cCCCchhHHHHHHHHhh
Q 007698 259 LYLKEDDK-YEFSEPTRIQGLVKNYS 283 (592)
Q Consensus 259 L~Lk~~~~-~e~le~~~i~~lvk~ys 283 (592)
.....+-- -.-++...|++-++..+
T Consensus 169 F~PD~~iF~~~~f~~d~l~~RlrelA 194 (637)
T TIGR01058 169 FHPDPTIFKTTQFNSNIIKERLKESA 194 (637)
T ss_pred EEeCHHHcCCCccCHHHHHHHHHHHh
Confidence 88544210 01135567887788777
No 29
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=97.49 E-value=0.00042 Score=57.43 Aligned_cols=85 Identities=21% Similarity=0.346 Sum_probs=56.9
Q ss_pred hhHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHHHHHHHHhhhhcccchhHHHHh
Q 007698 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKAL 185 (592)
Q Consensus 106 vfLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~L~tIa~Sgt~~f~~~l 185 (592)
.+++|||.||.++... ....+.|.+..+...-.|.|.|+|.||+...+...+...+.+
T Consensus 3 ~~~~~ll~Na~~~~~~-------------~~~~v~i~~~~~~~~~~v~i~d~g~g~~~~~~~~~~~~~~~~--------- 60 (103)
T cd00075 3 QVLLNLLSNAIKHTPE-------------GGGRITISVERDGDHLEIRVEDNGPGIPEEDLERIFERFSDG--------- 60 (103)
T ss_pred HHHHHHHHHHHHhCcC-------------CCCeEEEEEEecCCEEEEEEEeCCCCCCHHHHHHHhhhhhcC---------
Confidence 4789999999999521 023455665555445679999999999999987655433111
Q ss_pred hhcccCCCCCcccccccchhhhhhcccc----EEEEEE
Q 007698 186 KENNDLGADNGLIGQFGVGFYSAFLVAQ----KVVVST 219 (592)
Q Consensus 186 ~~~~~~~~~~~~IGqFGIGf~S~F~Vad----kV~V~S 219 (592)
......+..|+|++.+-.+++ .+.+.+
T Consensus 61 -------~~~~~~~~~g~gl~~~~~~~~~~~g~~~~~~ 91 (103)
T cd00075 61 -------SRSRKGGGTGLGLSIVKKLVELHGGRIEVES 91 (103)
T ss_pred -------CCCCCCCccccCHHHHHHHHHHcCCEEEEEe
Confidence 111235678999998888777 555544
No 30
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=97.19 E-value=0.0013 Score=71.05 Aligned_cols=77 Identities=25% Similarity=0.267 Sum_probs=49.8
Q ss_pred hHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHHHHHHHHhhhhcccchhHHHHhh
Q 007698 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKALK 186 (592)
Q Consensus 107 fLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~L~tIa~Sgt~~f~~~l~ 186 (592)
++.+||+||..+. ...+.|++..+.+.-.|+|.|||.||+++++...+...-+..
T Consensus 357 ~l~nli~NA~~~~----------------~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~~--------- 411 (461)
T PRK09470 357 ALENIVRNALRYS----------------HTKIEVAFSVDKDGLTITVDDDGPGVPEEEREQIFRPFYRVD--------- 411 (461)
T ss_pred HHHHHHHHHHHhC----------------CCcEEEEEEEECCEEEEEEEECCCCCCHHHHHHhcCCCccCC---------
Confidence 5788888988762 134566666666566799999999999998876554321110
Q ss_pred hcccCCCCCcccccccchhhhhhcccc
Q 007698 187 ENNDLGADNGLIGQFGVGFYSAFLVAQ 213 (592)
Q Consensus 187 ~~~~~~~~~~~IGqFGIGf~S~F~Vad 213 (592)
......-+..|+|++-+=.+++
T Consensus 412 -----~~~~~~~~g~GlGL~iv~~~v~ 433 (461)
T PRK09470 412 -----EARDRESGGTGLGLAIVENAIQ 433 (461)
T ss_pred -----cccCCCCCCcchhHHHHHHHHH
Confidence 0111234678999976655443
No 31
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=97.07 E-value=0.0012 Score=55.57 Aligned_cols=80 Identities=21% Similarity=0.345 Sum_probs=55.0
Q ss_pred hhHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHHHHHHHHhhhhcccchhHHHHh
Q 007698 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKAL 185 (592)
Q Consensus 106 vfLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~L~tIa~Sgt~~f~~~l 185 (592)
.++.||+.||.++... ...+.|.+..+...-.|.|.|+|.||+.+++...+.....+ .
T Consensus 8 ~~~~~l~~n~~~~~~~--------------~~~v~i~~~~~~~~~~i~i~d~g~g~~~~~~~~~~~~~~~~-~------- 65 (111)
T smart00387 8 QVLSNLLDNAIKYTPE--------------GGRITVTLERDGDHLEITVEDNGPGIPPEDLEKIFEPFFRT-D------- 65 (111)
T ss_pred HHHHHHHHHHHhcCCC--------------CCeEEEEEEEcCCEEEEEEEeCCCCCCHHHHHHHhcCeEEC-C-------
Confidence 3678899998888421 13566777666556789999999999999887655432211 0
Q ss_pred hhcccCCCCCcccccccchhhhhhccccE
Q 007698 186 KENNDLGADNGLIGQFGVGFYSAFLVAQK 214 (592)
Q Consensus 186 ~~~~~~~~~~~~IGqFGIGf~S~F~Vadk 214 (592)
......++.|+|++.+-.++++
T Consensus 66 -------~~~~~~~~~g~gl~~~~~~~~~ 87 (111)
T smart00387 66 -------GRSRKIGGTGLGLSIVKKLVEL 87 (111)
T ss_pred -------CCCCCCCcccccHHHHHHHHHH
Confidence 1123456789999988887764
No 32
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=96.95 E-value=0.0035 Score=67.73 Aligned_cols=79 Identities=22% Similarity=0.222 Sum_probs=49.1
Q ss_pred hhHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHHHHHHHHhhhhcccchhHHHHh
Q 007698 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKAL 185 (592)
Q Consensus 106 vfLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~L~tIa~Sgt~~f~~~l 185 (592)
..+.+||.||+.+. .+++.+.|++..+.+.-.|+|+|||.||+++++...+... .+..
T Consensus 371 ~vl~nli~Na~~~~--------------~~~~~i~i~~~~~~~~~~i~i~D~G~Gi~~~~~~~i~~~~-~~~~------- 428 (475)
T PRK11100 371 QALGNLLDNAIDFS--------------PEGGTITLSAEVDGEQVALSVEDQGPGIPDYALPRIFERF-YSLP------- 428 (475)
T ss_pred HHHHHHHHHHHHhC--------------CCCCEEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHHHHH-ccCC-------
Confidence 35778888888762 0123455665555555679999999999999887554322 1100
Q ss_pred hhcccCCCCCcccccccchhhhhhcccc
Q 007698 186 KENNDLGADNGLIGQFGVGFYSAFLVAQ 213 (592)
Q Consensus 186 ~~~~~~~~~~~~IGqFGIGf~S~F~Vad 213 (592)
.....-+..|+|++.+-.++.
T Consensus 429 -------~~~~~~~~~GlGL~i~~~~~~ 449 (475)
T PRK11100 429 -------RPANGRKSTGLGLAFVREVAR 449 (475)
T ss_pred -------CCCCCCCCcchhHHHHHHHHH
Confidence 001123456999988776654
No 33
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=96.94 E-value=0.0028 Score=66.74 Aligned_cols=76 Identities=20% Similarity=0.369 Sum_probs=49.8
Q ss_pred hhHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHHHHHHHHhhhhcccchhHHHHh
Q 007698 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKAL 185 (592)
Q Consensus 106 vfLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~L~tIa~Sgt~~f~~~l 185 (592)
.++..||+||+.+. ..++.+.|.+..+.+.-.|+|+|||.||+++++...+...-+.
T Consensus 250 ~il~nLi~NA~k~~--------------~~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~--------- 306 (356)
T PRK10755 250 LLLRNLVENAHRYS--------------PEGSTITIKLSQEDGGAVLAVEDEGPGIDESKCGELSKAFVRM--------- 306 (356)
T ss_pred HHHHHHHHHHHhhC--------------CCCCcEEEEEEEcCCEEEEEEEECCCCCCHHHHHHhCCCeEeC---------
Confidence 35788888887662 1124566666555556689999999999999987543321100
Q ss_pred hhcccCCCCCcccccccchhhhhhcccc
Q 007698 186 KENNDLGADNGLIGQFGVGFYSAFLVAQ 213 (592)
Q Consensus 186 ~~~~~~~~~~~~IGqFGIGf~S~F~Vad 213 (592)
+ ..-|.+|+|++-+-.+++
T Consensus 307 --------~-~~~~g~GlGL~i~~~i~~ 325 (356)
T PRK10755 307 --------D-SRYGGIGLGLSIVSRITQ 325 (356)
T ss_pred --------C-CCCCCcCHHHHHHHHHHH
Confidence 0 113568999988777655
No 34
>PRK10604 sensor protein RstB; Provisional
Probab=96.94 E-value=0.0018 Score=70.76 Aligned_cols=77 Identities=18% Similarity=0.282 Sum_probs=51.2
Q ss_pred hHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHHHHHHHHhhhhcccchhHHHHhh
Q 007698 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKALK 186 (592)
Q Consensus 107 fLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~L~tIa~Sgt~~f~~~l~ 186 (592)
++..||+||+.+. .+.+.|.+..+.+.-.|+|.|||.||+++++..-+....+..
T Consensus 323 vl~NLl~NAik~~----------------~~~I~I~~~~~~~~~~I~V~D~G~Gi~~e~~~~if~~f~r~~--------- 377 (433)
T PRK10604 323 VLDNLLNNALRYA----------------HSRVRVSLLLDGNQACLIVEDDGPGIPPEERERVFEPFVRLD--------- 377 (433)
T ss_pred HHHHHHHHHHHhC----------------CCeEEEEEEEECCEEEEEEEEcCCCCCHHHHhhcCCCCccCC---------
Confidence 5778888887762 134566666665566899999999999999876654433221
Q ss_pred hcccCCCCCcccccccchhhhhhcccc
Q 007698 187 ENNDLGADNGLIGQFGVGFYSAFLVAQ 213 (592)
Q Consensus 187 ~~~~~~~~~~~IGqFGIGf~S~F~Vad 213 (592)
.......|.+|+|++-+-.+++
T Consensus 378 -----~~~~~~~~g~GLGL~ivk~i~~ 399 (433)
T PRK10604 378 -----PSRDRATGGCGLGLAIVHSIAL 399 (433)
T ss_pred -----CCCCCCCCCccchHHHHHHHHH
Confidence 0111234678999986665554
No 35
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=96.89 E-value=0.0034 Score=67.59 Aligned_cols=79 Identities=19% Similarity=0.307 Sum_probs=49.8
Q ss_pred hHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHHHHHHHHhhhhcccchhHHHHhh
Q 007698 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKALK 186 (592)
Q Consensus 107 fLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~L~tIa~Sgt~~f~~~l~ 186 (592)
++.+||.||+++.. .++.+.|++..+.+.-.|+|.|||.||+++++...+...=++..
T Consensus 357 ~~~nll~Nai~~~~--------------~~~~I~i~~~~~~~~~~i~v~D~G~g~~~~~~~~~~~~~~~~~~-------- 414 (457)
T TIGR01386 357 AISNLLSNALRHTP--------------DGGTITVRIERRSDEVRVSVSNPGPGIPPEHLSRLFDRFYRVDP-------- 414 (457)
T ss_pred HHHHHHHHHHHcCC--------------CCceEEEEEEecCCEEEEEEEeCCCCCCHHHHHHhccccccCCc--------
Confidence 57788888777620 12345555555444457999999999999998766554322210
Q ss_pred hcccCCCCCcccccccchhhhhhcccc
Q 007698 187 ENNDLGADNGLIGQFGVGFYSAFLVAQ 213 (592)
Q Consensus 187 ~~~~~~~~~~~IGqFGIGf~S~F~Vad 213 (592)
.....-+..|+|++-+--+++
T Consensus 415 ------~~~~~~~g~GlGL~i~~~~~~ 435 (457)
T TIGR01386 415 ------ARSNSGEGTGLGLAIVRSIME 435 (457)
T ss_pred ------ccCCCCCCccccHHHHHHHHH
Confidence 111234568999987766654
No 36
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=96.89 E-value=0.0026 Score=69.09 Aligned_cols=79 Identities=20% Similarity=0.360 Sum_probs=50.4
Q ss_pred hHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHHHHHHHHhhhhcccchhHHHHhh
Q 007698 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKALK 186 (592)
Q Consensus 107 fLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~L~tIa~Sgt~~f~~~l~ 186 (592)
++..||.||+.+.. ..+.+.|.+..+.+.-.|+|.|||.||+++++..-+...-++.
T Consensus 356 vl~nll~NAi~~~~--------------~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~e~~~~lf~~~~~~~--------- 412 (466)
T PRK10549 356 LFNNLLENSLRYTD--------------SGGSLHISAEQRDKTLRLTFADSAPGVSDEQLQKLFERFYRTE--------- 412 (466)
T ss_pred HHHHHHHHHHHhCC--------------CCCEEEEEEEEcCCEEEEEEEecCCCcCHHHHHHhccCcccCC---------
Confidence 56678888777721 1234556655555555789999999999999876554432210
Q ss_pred hcccCCCCCcccccccchhhhhhcccc
Q 007698 187 ENNDLGADNGLIGQFGVGFYSAFLVAQ 213 (592)
Q Consensus 187 ~~~~~~~~~~~IGqFGIGf~S~F~Vad 213 (592)
+......|..|+|++-+-.+++
T Consensus 413 -----~~~~~~~~g~GlGL~iv~~i~~ 434 (466)
T PRK10549 413 -----GSRNRASGGSGLGLAICLNIVE 434 (466)
T ss_pred -----CCcCCCCCCCcHHHHHHHHHHH
Confidence 1112245678999987766655
No 37
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=96.80 E-value=0.0035 Score=68.19 Aligned_cols=80 Identities=18% Similarity=0.260 Sum_probs=50.5
Q ss_pred hhHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHHHHHHHHhhhhcccchhHHHHh
Q 007698 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKAL 185 (592)
Q Consensus 106 vfLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~L~tIa~Sgt~~f~~~l 185 (592)
.++..||+||+++.. ....+.|.+..+.+.-.|+|.|||+||+++++...+...-+..
T Consensus 320 ~vl~NLl~NAik~~~--------------~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~-------- 377 (430)
T PRK11006 320 SAISNLVYNAVNHTP--------------EGTHITVRWQRVPQGAEFSVEDNGPGIAPEHIPRLTERFYRVD-------- 377 (430)
T ss_pred HHHHHHHHHHHhcCC--------------CCCeEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHhccCccccc--------
Confidence 467889999988831 1233455555555556799999999999999876543321110
Q ss_pred hhcccCCCCCcccccccchhhhhhcccc
Q 007698 186 KENNDLGADNGLIGQFGVGFYSAFLVAQ 213 (592)
Q Consensus 186 ~~~~~~~~~~~~IGqFGIGf~S~F~Vad 213 (592)
.......|..|+|++-|-.+++
T Consensus 378 ------~~~~~~~~G~GLGL~ivk~iv~ 399 (430)
T PRK11006 378 ------KARSRQTGGSGLGLAIVKHALS 399 (430)
T ss_pred ------CCCCCCCCCCchHHHHHHHHHH
Confidence 0111224567999987776654
No 38
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=96.76 E-value=0.0034 Score=74.51 Aligned_cols=74 Identities=24% Similarity=0.352 Sum_probs=47.9
Q ss_pred hHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHHHHHHHHhhhhcccchhHHHHhh
Q 007698 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKALK 186 (592)
Q Consensus 107 fLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~L~tIa~Sgt~~f~~~l~ 186 (592)
+|..||+||+.+. +.+.+.|++..+.+.-.|+|+|||+||+++++..-+...-+.
T Consensus 517 il~NLl~NAik~~---------------~~g~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~---------- 571 (921)
T PRK15347 517 ILVNLLGNAVKFT---------------ETGGIRLRVKRHEQQLCFTVEDTGCGIDIQQQQQIFTPFYQA---------- 571 (921)
T ss_pred HHHHHHHHHhhcC---------------CCCCEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHHhcCcccC----------
Confidence 5677888888773 123455666555555679999999999999987554322111
Q ss_pred hcccCCCCCcccccccchhhhhhcccc
Q 007698 187 ENNDLGADNGLIGQFGVGFYSAFLVAQ 213 (592)
Q Consensus 187 ~~~~~~~~~~~IGqFGIGf~S~F~Vad 213 (592)
+ ...|..|+|++-+-.+++
T Consensus 572 -------~-~~~~g~GLGL~i~~~~~~ 590 (921)
T PRK15347 572 -------D-THSQGTGLGLTIASSLAK 590 (921)
T ss_pred -------C-CCCCCCchHHHHHHHHHH
Confidence 0 113567999976655543
No 39
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=96.75 E-value=0.004 Score=70.61 Aligned_cols=161 Identities=16% Similarity=0.139 Sum_probs=93.5
Q ss_pred chhhHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHHH--------HHHHHhhhhc
Q 007698 104 KEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEE--------LVDCLGTIAQ 175 (592)
Q Consensus 104 ~~vfLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~ee--------L~~~L~tIa~ 175 (592)
....+.|.|.||+|=-- . +..-.|.|.++ ..+.|+|.|||.||+-+- +.-.|..+-.
T Consensus 37 LhHlv~EVvDNsiDEal------------a--G~~~~I~V~l~-~d~sisV~DnGRGIPvdiH~~~~~~~vEvI~T~LHA 101 (635)
T COG0187 37 LHHLVWEVVDNSIDEAL------------A--GYADRIDVTLH-EDGSISVEDNGRGIPVDIHPKEKVSAVEVIFTVLHA 101 (635)
T ss_pred ceeeEeEeeechHhHHh------------h--CcCcEEEEEEc-CCCeEEEEECCCCCccccCCCCCCCceEEEEEeecc
Confidence 45678999999999621 1 13345777776 568999999999998764 2212222222
Q ss_pred ccchhHHHHhhhcccCCCCCcccccccchhhhhhccccEEEEEEecCCCCceEEEEEecCCCceEEeecCCCCccCCCCc
Q 007698 176 SGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSSYVIREETDPEKLLKRGT 255 (592)
Q Consensus 176 Sgt~~f~~~l~~~~~~~~~~~~IGqFGIGf~S~F~VadkV~V~Sr~~~~~~~~~W~s~~~~~~y~I~~~~~~~~~~~~GT 255 (592)
+|+ | . .+.-.-.=|--|||..-+=.++++++|.+++.+.--.-.|+. |...-.++.... .....+||
T Consensus 102 GGK--F----d----~~~YkvSGGLHGVG~SVVNALS~~l~v~v~r~gk~y~q~f~~--G~~~~~l~~ig~-~~~~~~GT 168 (635)
T COG0187 102 GGK--F----D----NDSYKVSGGLHGVGVSVVNALSTWLEVEVKRDGKIYRQRFER--GVPVTPLEVIGS-TDTKKTGT 168 (635)
T ss_pred Ccc--c----C----CCccEeecCCCccceEEEecccceEEEEEEECCEEEEEEEeC--CCcCCCceeccc-CCCCCCcc
Confidence 332 2 1 111123468899999888889999999999864222223432 211111221111 11246799
Q ss_pred EEEEEeecCC---ccCCCchhHHHHHHHHhhccCc-cceeecc
Q 007698 256 QITLYLKEDD---KYEFSEPTRIQGLVKNYSQFVS-FPIYTWQ 294 (592)
Q Consensus 256 ~I~L~Lk~~~---~~e~le~~~i~~lvk~ys~fl~-~PI~~~~ 294 (592)
+|+.+-.++- . + .+...|++-++.++=..+ .-|.+.+
T Consensus 169 ~V~F~PD~~iF~~~-~-f~~~~l~~RlrelA~L~~gl~I~l~d 209 (635)
T COG0187 169 KVRFKPDPEIFGET-E-FDYEILKRRLRELAFLNKGVKITLTD 209 (635)
T ss_pred EEEEEcChHhcCCc-c-cCHHHHHHHHHHHhccCCCCEEEEEe
Confidence 9988844321 1 2 255778888888872222 3355543
No 40
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=96.72 E-value=0.006 Score=65.84 Aligned_cols=79 Identities=19% Similarity=0.273 Sum_probs=50.4
Q ss_pred hhHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEE--eCCCCcEEEEEeCCCCCCHHHHHHHHhhhhcccchhHHH
Q 007698 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIK--PDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLK 183 (592)
Q Consensus 106 vfLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~--~d~~~~~L~I~DNGiGMt~eeL~~~L~tIa~Sgt~~f~~ 183 (592)
.++.+|+.||.+++.... .....|.|. .+.+.-.|+|.|||+||+++....-|...-++
T Consensus 390 ~vl~Nl~~NAik~~~~~~------------~~~~~i~i~~~~~~~~~~~~V~D~G~Gi~~~~~~~iF~~f~~~------- 450 (494)
T TIGR02938 390 SLFKALVDNAIEAMNIKG------------WKRRELSITTALNGDLIVVSILDSGPGIPQDLRYKVFEPFFTT------- 450 (494)
T ss_pred HHHHHHHHHHHHHhhccC------------CCcceEEEEEEecCCEEEEEEEeCCCCCCHHHHHHhcCCCccc-------
Confidence 378999999999963210 012234444 34445679999999999998887665443221
Q ss_pred HhhhcccCCCCCcccccccchhhhhhcccc
Q 007698 184 ALKENNDLGADNGLIGQFGVGFYSAFLVAQ 213 (592)
Q Consensus 184 ~l~~~~~~~~~~~~IGqFGIGf~S~F~Vad 213 (592)
.....+.-|+|++-+-.+++
T Consensus 451 ----------~~~~~~G~GlGL~i~~~iv~ 470 (494)
T TIGR02938 451 ----------KGGSRKHIGMGLSVAQEIVA 470 (494)
T ss_pred ----------CCCCCCCCcccHHHHHHHHH
Confidence 00114557899987766644
No 41
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=96.65 E-value=0.0043 Score=71.94 Aligned_cols=74 Identities=26% Similarity=0.366 Sum_probs=48.3
Q ss_pred hHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHHHHHHHHhhhhcccchhHHHHhh
Q 007698 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKALK 186 (592)
Q Consensus 107 fLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~L~tIa~Sgt~~f~~~l~ 186 (592)
++.+||+||.++.. ..+.+.|++..+.+.-.|+|.|||.||+++++.+.+-.-..+
T Consensus 583 vl~nLl~NAik~~~--------------~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~i~~~lF~pf~~---------- 638 (679)
T TIGR02916 583 VLGHLVQNALEATP--------------GEGRVAIRVERECGAARIEIEDSGCGMSPAFIRERLFKPFDT---------- 638 (679)
T ss_pred HHHHHHHHHHHhCC--------------CCCcEEEEEEEcCCEEEEEEEEcCCCcChHHHHHhcCCCCCC----------
Confidence 57788888888731 123456666555555679999999999999855443221111
Q ss_pred hcccCCCCCcccccccchhhhhhcccc
Q 007698 187 ENNDLGADNGLIGQFGVGFYSAFLVAQ 213 (592)
Q Consensus 187 ~~~~~~~~~~~IGqFGIGf~S~F~Vad 213 (592)
.+ -+..|+|++.+-.+++
T Consensus 639 ------~~---~~G~GLGL~i~~~iv~ 656 (679)
T TIGR02916 639 ------TK---GAGMGIGVYECRQYVE 656 (679)
T ss_pred ------CC---CCCcchhHHHHHHHHH
Confidence 01 1567999988876654
No 42
>PRK10815 sensor protein PhoQ; Provisional
Probab=96.54 E-value=0.0071 Score=67.58 Aligned_cols=73 Identities=19% Similarity=0.207 Sum_probs=47.3
Q ss_pred hHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHHHHHHHHhhhhcccchhHHHHhh
Q 007698 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKALK 186 (592)
Q Consensus 107 fLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~L~tIa~Sgt~~f~~~l~ 186 (592)
++.-||.||+.++. ..+.|.+..+.+.-.|+|.|||.||+++++..-+...-+.
T Consensus 382 vl~NLi~NAik~~~----------------~~i~I~~~~~~~~v~I~V~D~G~GI~~e~~~~iF~~f~~~---------- 435 (485)
T PRK10815 382 VMGNVLDNACKYCL----------------EFVEISARQTDEHLHIVVEDDGPGIPESKRELIFDRGQRA---------- 435 (485)
T ss_pred HHHHHHHHHHHhcC----------------CcEEEEEEEeCCEEEEEEEECCCCcCHHHHHHHhCCcccC----------
Confidence 57778888887741 2355666555445579999999999999987554321100
Q ss_pred hcccCCCCCcccccccchhhhhhcccc
Q 007698 187 ENNDLGADNGLIGQFGVGFYSAFLVAQ 213 (592)
Q Consensus 187 ~~~~~~~~~~~IGqFGIGf~S~F~Vad 213 (592)
+ ..-+..|+|++-+--+++
T Consensus 436 -------~-~~~~G~GLGL~Ivk~iv~ 454 (485)
T PRK10815 436 -------D-TLRPGQGLGLSVAREITE 454 (485)
T ss_pred -------C-CCCCCcchhHHHHHHHHH
Confidence 0 012347999988776655
No 43
>PRK09303 adaptive-response sensory kinase; Validated
Probab=96.51 E-value=0.0074 Score=65.04 Aligned_cols=77 Identities=18% Similarity=0.290 Sum_probs=47.3
Q ss_pred hHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCC-CcEEEEEeCCCCCCHHHHHHHHhhhhcccchhHHHHh
Q 007698 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE-NGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKAL 185 (592)
Q Consensus 107 fLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~-~~~L~I~DNGiGMt~eeL~~~L~tIa~Sgt~~f~~~l 185 (592)
++..||.||+.+.. ..+.+.|.+....+ .-.|+|.|||+||+.+++...+...-+.
T Consensus 276 vl~NLl~NAik~~~--------------~~~~I~i~~~~~~~~~v~i~V~D~G~GI~~~~~~~iF~pf~~~--------- 332 (380)
T PRK09303 276 VLLNLLDNAIKYTP--------------EGGTITLSMLHRTTQKVQVSICDTGPGIPEEEQERIFEDRVRL--------- 332 (380)
T ss_pred HHHHHHHHHHhcCC--------------CCceEEEEEEecCCCEEEEEEEEcCCCCCHHHHHHHccCceeC---------
Confidence 57788888887731 12233444333222 3469999999999999987554322111
Q ss_pred hhcccCCCCCcccccccchhhhhhcccc
Q 007698 186 KENNDLGADNGLIGQFGVGFYSAFLVAQ 213 (592)
Q Consensus 186 ~~~~~~~~~~~~IGqFGIGf~S~F~Vad 213 (592)
......+..|+|++-|..+++
T Consensus 333 -------~~~~~~~G~GLGL~i~~~iv~ 353 (380)
T PRK09303 333 -------PRDEGTEGYGIGLSVCRRIVR 353 (380)
T ss_pred -------CCCCCCCcccccHHHHHHHHH
Confidence 001224568999988877755
No 44
>PLN03128 DNA topoisomerase 2; Provisional
Probab=96.42 E-value=0.0061 Score=74.26 Aligned_cols=127 Identities=24% Similarity=0.306 Sum_probs=76.1
Q ss_pred hHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHHHHH-------H-HHhhhhcccc
Q 007698 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELV-------D-CLGTIAQSGT 178 (592)
Q Consensus 107 fLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~-------~-~L~tIa~Sgt 178 (592)
.+.|+|.||.|-. +| ++ .--.|.|.++.+++.|+|.|||.||+-+--. + .|+.+-+||+
T Consensus 56 i~dEIldNAvDe~--~~-----~g------~~~~I~V~i~~~dgsIsV~DnGrGIPv~ih~~~g~~~~ElIft~LhaGgk 122 (1135)
T PLN03128 56 IFDEILVNAADNK--QR-----DP------SMDSLKVDIDVEQNTISVYNNGKGIPVEIHKEEGVYVPELIFGHLLTSSN 122 (1135)
T ss_pred HHHHHHHHHHHHh--hh-----cC------CCcEEEEEEEcCCCeEEEEecCccccCCCCCCCCCccceEEEEeeccccc
Confidence 7899999999963 11 11 2246777777777899999999999864211 1 1222223332
Q ss_pred hhHHHHhhhcccCCCCCcccccccchhhhhhccccEEEEEEecCCCCceE--EEEEecCC---CceEEeecCCCCccCCC
Q 007698 179 SKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQY--VWEAEADS---SSYVIREETDPEKLLKR 253 (592)
Q Consensus 179 ~~f~~~l~~~~~~~~~~~~IGqFGIGf~S~F~VadkV~V~Sr~~~~~~~~--~W~s~~~~---~~y~I~~~~~~~~~~~~ 253 (592)
| . ...-.-.-|.-|||...+=.++.+++|.+.....+..| .|+. |. ..-.|.... ...+
T Consensus 123 --F----d----d~~ykvSGGlhGvGasvvNaLS~~f~Vev~d~r~gk~y~q~f~~--G~~~~~~p~i~~~~----~~~~ 186 (1135)
T PLN03128 123 --F----D----DNEKKTTGGRNGYGAKLANIFSTEFTVETADGNRGKKYKQVFTN--NMSVKSEPKITSCK----ASEN 186 (1135)
T ss_pred --c----C----CccceeeccccCCCCeEEEeecCeEEEEEEECCCCeEEEEEeCC--CcccCCCceeccCC----CCCC
Confidence 2 1 11223468999999999888999999999832233333 3432 21 111122211 1258
Q ss_pred CcEEEEEee
Q 007698 254 GTQITLYLK 262 (592)
Q Consensus 254 GT~I~L~Lk 262 (592)
||+|+..-.
T Consensus 187 GT~ItF~PD 195 (1135)
T PLN03128 187 WTKITFKPD 195 (1135)
T ss_pred ceEEEEEEC
Confidence 999988743
No 45
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=96.40 E-value=0.013 Score=59.83 Aligned_cols=79 Identities=25% Similarity=0.336 Sum_probs=48.4
Q ss_pred hHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHHHHHHHHhhhhcccchhHHHHhh
Q 007698 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKALK 186 (592)
Q Consensus 107 fLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~L~tIa~Sgt~~f~~~l~ 186 (592)
++.+||.||+++.. ....+.|.+..+.+.-.|+|.|||.||+.+.+...+...-+..
T Consensus 233 vl~nll~Nai~~~~--------------~~~~i~i~~~~~~~~~~i~i~d~G~gi~~~~~~~if~~~~~~~--------- 289 (333)
T TIGR02966 233 AFSNLVSNAIKYTP--------------EGGTITVRWRRDGGGAEFSVTDTGIGIAPEHLPRLTERFYRVD--------- 289 (333)
T ss_pred HHHHHHHHhheeCC--------------CCCeEEEEEEEcCCEEEEEEEecCCCCCHHHHhhhccCceecC---------
Confidence 67888999887731 1133455554444456799999999999998875543321110
Q ss_pred hcccCCCCCcccccccchhhhhhcccc
Q 007698 187 ENNDLGADNGLIGQFGVGFYSAFLVAQ 213 (592)
Q Consensus 187 ~~~~~~~~~~~IGqFGIGf~S~F~Vad 213 (592)
.......+..|+|++.+-.+++
T Consensus 290 -----~~~~~~~~g~glGL~~~~~~~~ 311 (333)
T TIGR02966 290 -----KSRSRDTGGTGLGLAIVKHVLS 311 (333)
T ss_pred -----cccccCCCCCcccHHHHHHHHH
Confidence 0011123456999988776654
No 46
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=96.33 E-value=0.01 Score=64.03 Aligned_cols=61 Identities=16% Similarity=0.313 Sum_probs=38.4
Q ss_pred CCceEEEEeCCCCcEEEEEeCCCCCCHHHHHHHHhhhhcccchhHHHHhhhcccCCCCCcccccccchhhhhhcccc
Q 007698 137 GDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQ 213 (592)
Q Consensus 137 ~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~L~tIa~Sgt~~f~~~l~~~~~~~~~~~~IGqFGIGf~S~F~Vad 213 (592)
+.+.|.+..+.+.-.|+|.|||.||+++++...+...-+. + .... .+.+|+|++-+-.+++
T Consensus 349 ~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~~~~~f~~~-------------~--~~~~-~~g~GlGL~iv~~i~~ 409 (435)
T PRK09467 349 GWIKVSSGTEGKRAWFQVEDDGPGIPPEQLKHLFQPFTRG-------------D--SARG-SSGTGLGLAIVKRIVD 409 (435)
T ss_pred CeEEEEEEecCCEEEEEEEecCCCcCHHHHHHhcCCcccC-------------C--CCCC-CCCeehhHHHHHHHHH
Confidence 3455555555444579999999999999987655432211 0 0111 2568999987766654
No 47
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=96.30 E-value=0.0058 Score=72.19 Aligned_cols=157 Identities=20% Similarity=0.200 Sum_probs=86.1
Q ss_pred hhhHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHHHHH-------HHHhhhhccc
Q 007698 105 EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELV-------DCLGTIAQSG 177 (592)
Q Consensus 105 ~vfLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~-------~~L~tIa~Sg 177 (592)
...+.|+|.||+|=... ...-.|.|.+++ .+.|+|+|||.||+-+.-. +...++..+|
T Consensus 131 hhLv~EIlDNSVDE~la--------------G~~~~I~V~i~~-DgsItV~DnGRGIPvd~h~k~g~s~~E~VlT~LhAG 195 (903)
T PTZ00109 131 HQLLFEILDNSVDEYLA--------------GECNKITVVLHK-DGSVEISDNGRGIPCDVSEKTGKSGLETVLTVLHSG 195 (903)
T ss_pred eEEEEEEeeccchhhcc--------------CCCcEEEEEEcC-CCeEEEEeCCccccccccccCCCcceeEEEEEeccC
Confidence 34789999999995210 123357777765 4689999999999864321 1122333444
Q ss_pred chhHHHH---h-hhc-------------------------c-cC--CCCCcccccccchhhhhhccccEEEEEEecCCCC
Q 007698 178 TSKFLKA---L-KEN-------------------------N-DL--GADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSD 225 (592)
Q Consensus 178 t~~f~~~---l-~~~-------------------------~-~~--~~~~~~IGqFGIGf~S~F~VadkV~V~Sr~~~~~ 225 (592)
. +|-.. + ..+ . +. +.=...-|.-|||.-.+=.++.+++|.+++.+
T Consensus 196 G-KF~~~~~~~~~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~~~~~YkvSGGLHGVG~SVVNALS~~l~VeV~RdG-- 272 (903)
T PTZ00109 196 G-KFQDTFPKNSRSDKSEDKNDTKSSKKGKSSHVKGPKEAKEKESSQMYEYSSGLHGVGLSVVNALSSFLKVDVFKGG-- 272 (903)
T ss_pred c-cccCcccccccccccccccccccccccccccccccccccccccCCcceecCcCCCcceeeeeeccCeEEEEEEECC--
Confidence 2 12110 0 000 0 00 00023678999999988889999999999854
Q ss_pred ceEEEEEecCCCceEEeecCCCCcc-CCCCcEEEEEee-cC-CccC-C--------------CchhHHHHHHHHhh
Q 007698 226 KQYVWEAEADSSSYVIREETDPEKL-LKRGTQITLYLK-ED-DKYE-F--------------SEPTRIQGLVKNYS 283 (592)
Q Consensus 226 ~~~~W~s~~~~~~y~I~~~~~~~~~-~~~GT~I~L~Lk-~~-~~~e-~--------------le~~~i~~lvk~ys 283 (592)
..|.-+-..| . .+.+....... ..+||+|+..-. +. .. . . .+...|++-++.++
T Consensus 273 K~y~q~F~rG--~-~v~pLkvig~~~~~tGT~VtF~PD~~~IF~-~~~~~~~~~~~~~~~~~F~~d~L~~RLrElA 344 (903)
T PTZ00109 273 KIYSIELSKG--K-VTKPLSVFSCPLKKRGTTIHFLPDYKHIFK-THHQHTETEEEEGCKNGFNLDLIKNRIHELS 344 (903)
T ss_pred EEEEEEeCCC--c-ccCCccccCCcCCCCceEEEEEeCcchhcC-ccccccccccccccccccCHHHHHHHHHHHh
Confidence 2332222222 1 11111100111 358999888765 42 10 1 1 24456777777777
No 48
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=96.29 E-value=0.0094 Score=73.62 Aligned_cols=132 Identities=23% Similarity=0.324 Sum_probs=79.0
Q ss_pred hHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHHHHH-------H-HHhhhhcccc
Q 007698 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELV-------D-CLGTIAQSGT 178 (592)
Q Consensus 107 fLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~-------~-~L~tIa~Sgt 178 (592)
.+.|+|.||.|-. +| ++ ....--.|.|.++.+.+.|+|.|||.||+-+--. + .|+.+-+||+
T Consensus 61 i~dEIldNAvDe~--~r-----~~---~~g~~~~I~V~i~~d~g~IsV~dnGrGIPv~~h~~~~~~~pElIft~L~aGgk 130 (1388)
T PTZ00108 61 IFDEILVNAADNK--AR-----DK---GGHRMTYIKVTIDEENGEISVYNDGEGIPVQIHKEHKIYVPEMIFGHLLTSSN 130 (1388)
T ss_pred hHHHHhhhhhhhh--cc-----cC---CCCCccEEEEEEeccCCeEEEEecCCcccCCCCCCCCCccceEEEEEeecccc
Confidence 7899999999963 11 10 0112346888888877899999999999764211 1 1333333332
Q ss_pred hhHHHHhhhcccCCCCCcccccccchhhhhhccccEEEEEEecCCCCceE--EEEEec-CCCceEEeecCCCCccCCCCc
Q 007698 179 SKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQY--VWEAEA-DSSSYVIREETDPEKLLKRGT 255 (592)
Q Consensus 179 ~~f~~~l~~~~~~~~~~~~IGqFGIGf~S~F~VadkV~V~Sr~~~~~~~~--~W~s~~-~~~~y~I~~~~~~~~~~~~GT 255 (592)
| . .......-|.-|+|...+=.++.+++|.++.......| .|+... ......|.... ...+||
T Consensus 131 --f----d----d~~yKvSGGlhGVGasvvNalS~~f~Vev~r~~~gk~y~q~f~~Gm~~~~~p~i~~~~----~~~~GT 196 (1388)
T PTZ00108 131 --Y----D----DTEKRVTGGRNGFGAKLTNIFSTKFTVECVDSKSGKKFKMTWTDNMSKKSEPRITSYD----GKKDYT 196 (1388)
T ss_pred --C----C----CCceeeecccccCCccccccccceEEEEEEECCCCCEEEEEecCCCcCCCCCccCCCC----CCCCce
Confidence 2 1 11223468999999999999999999999985223333 454310 00111222211 015899
Q ss_pred EEEEEee
Q 007698 256 QITLYLK 262 (592)
Q Consensus 256 ~I~L~Lk 262 (592)
+|+..-.
T Consensus 197 ~VtF~PD 203 (1388)
T PTZ00108 197 KVTFYPD 203 (1388)
T ss_pred EEEEEeC
Confidence 9888743
No 49
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=96.25 E-value=0.014 Score=68.23 Aligned_cols=79 Identities=18% Similarity=0.333 Sum_probs=50.8
Q ss_pred hHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHHHHHHHHhhhhcccchhHHHHhh
Q 007698 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKALK 186 (592)
Q Consensus 107 fLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~L~tIa~Sgt~~f~~~l~ 186 (592)
++..||.||.++.. +...+.|.+..+.+.-.|+|.|||.||+++++...+...-+. +
T Consensus 601 il~NLI~NAik~s~--------------~~~~I~I~~~~~~~~v~I~V~D~G~GI~~e~~~~IFe~F~t~-~-------- 657 (703)
T TIGR03785 601 MLDKLVDNAREFSP--------------EDGLIEVGLSQNKSHALLTVSNEGPPLPEDMGEQLFDSMVSV-R-------- 657 (703)
T ss_pred HHHHHHHHHHHHCC--------------CCCeEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHHhCCCeec-C--------
Confidence 57788888888741 123455666555555679999999999999987655443211 0
Q ss_pred hcccCCCCCcccccccchhhhhhcccc
Q 007698 187 ENNDLGADNGLIGQFGVGFYSAFLVAQ 213 (592)
Q Consensus 187 ~~~~~~~~~~~IGqFGIGf~S~F~Vad 213 (592)
.....--+..|+|++-|-.+++
T Consensus 658 -----~~~~~~~~g~GLGL~Ivr~Iv~ 679 (703)
T TIGR03785 658 -----DQGAQDQPHLGLGLYIVRLIAD 679 (703)
T ss_pred -----CCCCCCCCCccHHHHHHHHHHH
Confidence 0011123468999988877665
No 50
>PLN03237 DNA topoisomerase 2; Provisional
Probab=96.17 E-value=0.012 Score=72.83 Aligned_cols=162 Identities=18% Similarity=0.206 Sum_probs=90.2
Q ss_pred hHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHHHHH-------HH-Hhhhhcccc
Q 007698 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELV-------DC-LGTIAQSGT 178 (592)
Q Consensus 107 fLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~-------~~-L~tIa~Sgt 178 (592)
.+.|+|.||.|-. +| + ..--.|.|.++.+.+.|+|.|||.||+-+--. +. |+.+-+||+
T Consensus 81 ifdEIldNAvDe~--~r-----~------g~~~~I~V~I~~~~gsIsV~DnGRGIPV~iH~~eg~~~pElIft~LhAGgk 147 (1465)
T PLN03237 81 IFDEILVNAADNK--QR-----D------PKMDSLRVVIDVEQNLISVYNNGDGVPVEIHQEEGVYVPEMIFGHLLTSSN 147 (1465)
T ss_pred hHHHHhhhhHhHH--hh-----c------CCCCEEEEEEEcCCCEEEEEecCccccCCCCCCCCCccceEEEEeeecccc
Confidence 7899999999963 11 1 12346777777778899999999999865111 11 222223322
Q ss_pred hhHHHHhhhcccCCCCCcccccccchhhhhhccccEEEEEEecCCCCceE--EEEEecCC-CceEEeecCCCCccCCCCc
Q 007698 179 SKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQY--VWEAEADS-SSYVIREETDPEKLLKRGT 255 (592)
Q Consensus 179 ~~f~~~l~~~~~~~~~~~~IGqFGIGf~S~F~VadkV~V~Sr~~~~~~~~--~W~s~~~~-~~y~I~~~~~~~~~~~~GT 255 (592)
| . .....-.-|.-|+|...+=.++.+++|.++.......| .|...-|. ..-.+.... ...+||
T Consensus 148 --F----d----d~~yKvSGGlhGVGasvvNaLS~~f~Vev~Dg~~gk~y~Q~f~~nmG~~~~p~i~~~~----~~~~GT 213 (1465)
T PLN03237 148 --Y----D----DNEKKTTGGRNGYGAKLTNIFSTEFVIETADGKRQKKYKQVFSNNMGKKSEPVITKCK----KSENWT 213 (1465)
T ss_pred --C----C----CCcceeeccccccCccccccccCeeEEEEEECCCCeEEEEEEeCCCCccCCceeccCC----CCCCce
Confidence 2 1 11223468999999999989999999999832122334 56531111 111122211 125899
Q ss_pred EEEEEeecCCc-cCCCchhHHHHHHHHh---hccCc--cceeeccc
Q 007698 256 QITLYLKEDDK-YEFSEPTRIQGLVKNY---SQFVS--FPIYTWQE 295 (592)
Q Consensus 256 ~I~L~Lk~~~~-~e~le~~~i~~lvk~y---s~fl~--~PI~~~~~ 295 (592)
+|+..-...-- -.-++.+.|..+.++. +.||. .-|+++++
T Consensus 214 ~VtF~PD~eiF~~~~fd~D~l~~~~rRlrdLAa~LnkGlkI~Lnde 259 (1465)
T PLN03237 214 KVTFKPDLAKFNMTHLEDDVVALMKKRVVDIAGCLGKTVKVELNGK 259 (1465)
T ss_pred EEEEEECHHHhCCceEcHHHHHHHHHHHHHHHhccCCCcEEEEEec
Confidence 99877433110 0112445554443333 44553 44666544
No 51
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=96.15 E-value=0.0072 Score=69.46 Aligned_cols=157 Identities=15% Similarity=0.128 Sum_probs=84.4
Q ss_pred hHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHHHHHH----------HHhhhhcc
Q 007698 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVD----------CLGTIAQS 176 (592)
Q Consensus 107 fLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~----------~L~tIa~S 176 (592)
.+.|+|.||+|-.- + +|. ...-.|.|.++ .+.|+|+|||.||+-+--.. .+.++..+
T Consensus 49 i~~EIldNavDe~~--~-----~~~----g~~~~I~V~i~--dgsisV~dnGrGIPv~~h~~~~g~~~~~~E~i~t~Lha 115 (602)
T PHA02569 49 IIDEIIDNSVDEAI--R-----TNF----KFANKIDVTIK--NNQVTVSDNGRGIPQAMVTTPEGEEIPGPVAAWTRTKA 115 (602)
T ss_pred eeehhhhhhhhhhh--c-----cCC----CCCcEEEEEEc--CCEEEEEECCCcccCCcccccccccccceEEEEEeecc
Confidence 67899999999621 1 110 12346777776 67899999999998643211 01122223
Q ss_pred cchhHHHHhhhcccCCCCCcccccccchhhhhhccccEEEEEEecCCCCceEEEEEecCCCceEEeecCCCCccCCCCcE
Q 007698 177 GTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSSYVIREETDPEKLLKRGTQ 256 (592)
Q Consensus 177 gt~~f~~~l~~~~~~~~~~~~IGqFGIGf~S~F~VadkV~V~Sr~~~~~~~~~W~s~~~~~~y~I~~~~~~~~~~~~GT~ 256 (592)
|. +| . +.-.-.-|.-|||...+=.++.+++|.++..+..-...|.. | . .+.+.. ......+||+
T Consensus 116 Gg-kF----d-----~~ykvSGGlhGVG~svvNaLS~~~~V~v~~~~~~~~q~f~~--G--~-~~~~~~-~~~~~~~GT~ 179 (602)
T PHA02569 116 GS-NF----D-----DTNRVTGGMNGVGSSLTNFFSVLFIGETCDGKNEVTVNCSN--G--A-ENISWS-TKPGKGKGTS 179 (602)
T ss_pred cc-cc----C-----CcceeeCCcCCccceeeeccchhhheEEEcCCEEEEEEecC--C--c-ccCCcc-cCCCCCCccE
Confidence 32 12 1 01223579999999888888999999876532111223321 2 1 111111 1112468999
Q ss_pred EEEEeecCC---ccCCC--chhHHHHHHHHhhccCc--cceeecc
Q 007698 257 ITLYLKEDD---KYEFS--EPTRIQGLVKNYSQFVS--FPIYTWQ 294 (592)
Q Consensus 257 I~L~Lk~~~---~~e~l--e~~~i~~lvk~ys~fl~--~PI~~~~ 294 (592)
|+......- . +|- ....|.+-++..+ |+. .-|.+++
T Consensus 180 V~F~PD~~iF~~~-~~~~~~~~~l~~Rl~elA-~Ln~Gl~I~l~d 222 (602)
T PHA02569 180 VTFIPDFSHFEVN-GLDQQYLDIILDRLQTLA-VVFPDIKFTFNG 222 (602)
T ss_pred EEEEECHHHhCCC-ccCccHHHHHHHHHHHHh-cCCCCCEEEEEe
Confidence 988854321 1 121 1244555555555 333 3355543
No 52
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=96.08 E-value=0.022 Score=63.68 Aligned_cols=80 Identities=18% Similarity=0.234 Sum_probs=50.1
Q ss_pred hHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHHHHHHHHhhhhcccchhHHHHhh
Q 007698 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKALK 186 (592)
Q Consensus 107 fLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~L~tIa~Sgt~~f~~~l~ 186 (592)
.+.+||+||++|+.+. + .+...+.|.+..+.+.-.|.|.|||.||++++...-+.. +.+.+
T Consensus 436 vl~nLl~NAi~~~~~~-------~---~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~-~~~tk-------- 496 (545)
T PRK15053 436 IVGNLLDNAFEASLRS-------D---EGNKIVELFLSDEGDDVVIEVADQGCGVPESLRDKIFEQ-GVSTR-------- 496 (545)
T ss_pred HHHHHHHHHHHHHhhC-------C---CCCceEEEEEEECCCEEEEEEEeCCCCcCHHHHHHHhCC-CCCCC--------
Confidence 5789999999996321 1 011334444444444457999999999999998765543 22211
Q ss_pred hcccCCCCCcccccccchhhhhhcccc
Q 007698 187 ENNDLGADNGLIGQFGVGFYSAFLVAQ 213 (592)
Q Consensus 187 ~~~~~~~~~~~IGqFGIGf~S~F~Vad 213 (592)
. .--|..|+|++-+-.+++
T Consensus 497 -------~-~~~~g~GlGL~ivk~iv~ 515 (545)
T PRK15053 497 -------A-DEPGEHGIGLYLIASYVT 515 (545)
T ss_pred -------C-CCCCCceeCHHHHHHHHH
Confidence 1 112456999988877654
No 53
>PRK10364 sensor protein ZraS; Provisional
Probab=96.07 E-value=0.015 Score=63.59 Aligned_cols=73 Identities=19% Similarity=0.292 Sum_probs=48.1
Q ss_pred hHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHHHHHHHHhhhhcccchhHHHHhh
Q 007698 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKALK 186 (592)
Q Consensus 107 fLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~L~tIa~Sgt~~f~~~l~ 186 (592)
.+..||.||.+|.. ..+.+.|.+..+.+.-.|+|.|||.||+++++...+... .+.
T Consensus 352 il~NLl~NA~k~~~--------------~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~~-~~~--------- 407 (457)
T PRK10364 352 VLLNLYLNAIQAIG--------------QHGVISVTASESGAGVKISVTDSGKGIAADQLEAIFTPY-FTT--------- 407 (457)
T ss_pred HHHHHHHHHHHhcC--------------CCCeEEEEEEEeCCeEEEEEEECCCCCCHHHHHHHhCcc-ccC---------
Confidence 46778889998841 123455666555555689999999999999887554322 110
Q ss_pred hcccCCCCCcccccccchhhhhhcccc
Q 007698 187 ENNDLGADNGLIGQFGVGFYSAFLVAQ 213 (592)
Q Consensus 187 ~~~~~~~~~~~IGqFGIGf~S~F~Vad 213 (592)
. -+..|+|++-+-.+++
T Consensus 408 ------k----~~g~GlGL~iv~~~v~ 424 (457)
T PRK10364 408 ------K----AEGTGLGLAVVHNIVE 424 (457)
T ss_pred ------C----CCCCcccHHHHHHHHH
Confidence 0 1236999987766654
No 54
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=96.04 E-value=0.024 Score=66.48 Aligned_cols=87 Identities=23% Similarity=0.345 Sum_probs=56.5
Q ss_pred hHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeC-CCCcEEEEEeCCCCCCHHHHHHHHhhhhcccchhHHHHh
Q 007698 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPD-PENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKAL 185 (592)
Q Consensus 107 fLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d-~~~~~L~I~DNGiGMt~eeL~~~L~tIa~Sgt~~f~~~l 185 (592)
++..||.||.++. ..+.+.|.+..+ .+.-.|+|.|||+||+.+++..-+...-+.
T Consensus 402 vl~NLl~NAik~~---------------~~g~v~i~~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~--------- 457 (779)
T PRK11091 402 ILWNLISNAVKFT---------------QQGGVTVRVRYEEGDMLTFEVEDSGIGIPEDELDKIFAMYYQV--------- 457 (779)
T ss_pred HHHHHHHHHHHhC---------------CCCcEEEEEEEccCCEEEEEEEecCCCCCHHHHHHHHHHhhcc---------
Confidence 5779999998883 124466666665 334579999999999999987665443221
Q ss_pred hhcccCCCCCcccccccchhhhhhccc----cEEEEEEec
Q 007698 186 KENNDLGADNGLIGQFGVGFYSAFLVA----QKVVVSTKS 221 (592)
Q Consensus 186 ~~~~~~~~~~~~IGqFGIGf~S~F~Va----dkV~V~Sr~ 221 (592)
+ ........|.-|+|+.-+-.+. -++.|.|..
T Consensus 458 ~----~~~~~~~~~GtGLGL~i~~~iv~~~gG~i~v~s~~ 493 (779)
T PRK11091 458 K----DSHGGKPATGTGIGLAVSKRLAQAMGGDITVTSEE 493 (779)
T ss_pred c----CCCCCCCCCCcchHHHHHHHHHHHcCCEEEEEecC
Confidence 0 0112233566799998765544 367777664
No 55
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=96.03 E-value=0.017 Score=69.07 Aligned_cols=84 Identities=23% Similarity=0.342 Sum_probs=56.0
Q ss_pred hHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCC-cEEEEEeCCCCCCHHHHHHHHhhhhcccchhHHHHh
Q 007698 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPEN-GTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKAL 185 (592)
Q Consensus 107 fLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~-~~L~I~DNGiGMt~eeL~~~L~tIa~Sgt~~f~~~l 185 (592)
++..||+||+.+. ..+.+.|.+....+. -.|.|.|||+||+++++..-+....+.
T Consensus 583 il~nLi~NAik~~---------------~~g~i~i~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~--------- 638 (968)
T TIGR02956 583 VLINLVGNAIKFT---------------DRGSVVLRVSLNDDSSLLFEVEDTGCGIAEEEQATLFDAFTQA--------- 638 (968)
T ss_pred HHHHHHHHHHhhC---------------CCCeEEEEEEEcCCCeEEEEEEeCCCCCCHHHHHHHHhhhhcc---------
Confidence 6788999999873 124466676666665 679999999999999987665443221
Q ss_pred hhcccCCCCCcccccccchhhhhhcccc----EEEEEEec
Q 007698 186 KENNDLGADNGLIGQFGVGFYSAFLVAQ----KVVVSTKS 221 (592)
Q Consensus 186 ~~~~~~~~~~~~IGqFGIGf~S~F~Vad----kV~V~Sr~ 221 (592)
......|..|+|++-|-.+++ ++.|.|..
T Consensus 639 -------~~~~~~~g~GLGL~i~~~l~~~~gG~i~~~s~~ 671 (968)
T TIGR02956 639 -------DGRRRSGGTGLGLAISQRLVEAMDGELGVESEL 671 (968)
T ss_pred -------CCCCCCCCccHHHHHHHHHHHHcCCEEEEEecC
Confidence 111234678999986655443 56665543
No 56
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=95.99 E-value=0.019 Score=63.50 Aligned_cols=76 Identities=20% Similarity=0.314 Sum_probs=49.5
Q ss_pred hhHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHHHHHHHHhhhhcccchhHHHHh
Q 007698 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKAL 185 (592)
Q Consensus 106 vfLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~L~tIa~Sgt~~f~~~l 185 (592)
.++.+|+.||++|... .....+.|++..+.+.-.|+|.|||.||+++++...+.. +.+.
T Consensus 436 ~vl~nLl~NAi~~~~~------------~~~~~I~i~~~~~~~~~~i~V~D~G~gi~~~~~~~iF~~-~~~~-------- 494 (542)
T PRK11086 436 TILGNLIENALEAVGG------------EEGGEISVSLHYRNGWLHCEVSDDGPGIAPDEIDAIFDK-GYST-------- 494 (542)
T ss_pred HHHHHHHHHHHHHhhc------------CCCcEEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHHhC-CCcc--------
Confidence 3577999999999631 012345555555544567999999999999998765543 1111
Q ss_pred hhcccCCCCCcccccccchhhhhhcccc
Q 007698 186 KENNDLGADNGLIGQFGVGFYSAFLVAQ 213 (592)
Q Consensus 186 ~~~~~~~~~~~~IGqFGIGf~S~F~Vad 213 (592)
. -+.-|+|+.-+-.+++
T Consensus 495 -------~----~~g~GlGL~iv~~iv~ 511 (542)
T PRK11086 495 -------K----GSNRGVGLYLVKQSVE 511 (542)
T ss_pred -------C----CCCCcCcHHHHHHHHH
Confidence 0 1245999987766644
No 57
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=95.97 E-value=0.04 Score=65.59 Aligned_cols=81 Identities=23% Similarity=0.382 Sum_probs=52.2
Q ss_pred hHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeC---------------CCCcEEEEEeCCCCCCHHHHHHHHh
Q 007698 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPD---------------PENGTITITDTGIGMTKEELVDCLG 171 (592)
Q Consensus 107 fLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d---------------~~~~~L~I~DNGiGMt~eeL~~~L~ 171 (592)
++..||+||+.++. ..+.+.|.+..+ .+.-.|.|.|||+||+++++...+.
T Consensus 564 vl~NLl~NAik~~~--------------~~g~I~I~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~~~~iFe 629 (828)
T PRK13837 564 VLMNLCSNAAQAMD--------------GAGRVDISLSRAKLRAPKVLSHGVLPPGRYVLLRVSDTGAGIDEAVLPHIFE 629 (828)
T ss_pred HHHHHHHHHHHHcc--------------cCCeEEEEEEEeecccccccccccCCCCCEEEEEEEECCCCCCHHHHHHhhC
Confidence 57889999988852 123455555543 2224689999999999999875443
Q ss_pred hhhcccchhHHHHhhhcccCCCCCcccccccchhhhhhcccc----EEEEEEec
Q 007698 172 TIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQ----KVVVSTKS 221 (592)
Q Consensus 172 tIa~Sgt~~f~~~l~~~~~~~~~~~~IGqFGIGf~S~F~Vad----kV~V~Sr~ 221 (592)
..- + .. . +..|+|++-|-.+++ ++.|.|..
T Consensus 630 ~F~-~----------------~~-~--~G~GLGL~i~~~iv~~~gG~i~v~s~~ 663 (828)
T PRK13837 630 PFF-T----------------TR-A--GGTGLGLATVHGIVSAHAGYIDVQSTV 663 (828)
T ss_pred Ccc-c----------------CC-C--CCCcchHHHHHHHHHHCCCEEEEEecC
Confidence 221 0 01 1 677999987755544 67777754
No 58
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=95.94 E-value=0.016 Score=68.92 Aligned_cols=82 Identities=24% Similarity=0.409 Sum_probs=53.5
Q ss_pred hHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHHHHHHHHhhhhcccchhHHHHhh
Q 007698 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKALK 186 (592)
Q Consensus 107 fLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~L~tIa~Sgt~~f~~~l~ 186 (592)
++..||+||+.+. ..+.+.|.+..+...-.|.|.|||+||+++++...+...-+.
T Consensus 565 il~NLl~NAik~~---------------~~g~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~---------- 619 (914)
T PRK11466 565 VITNLLSNALRFT---------------DEGSIVLRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQV---------- 619 (914)
T ss_pred HHHHHHHHHHHhC---------------CCCeEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHhchhhcC----------
Confidence 5778888988873 123455555555545679999999999999987655332111
Q ss_pred hcccCCCCCcccccccchhhhhhcccc----EEEEEEec
Q 007698 187 ENNDLGADNGLIGQFGVGFYSAFLVAQ----KVVVSTKS 221 (592)
Q Consensus 187 ~~~~~~~~~~~IGqFGIGf~S~F~Vad----kV~V~Sr~ 221 (592)
....|..|+|++-|-.+++ ++.|.|..
T Consensus 620 --------~~~~~g~GLGL~i~~~l~~~~gG~i~v~s~~ 650 (914)
T PRK11466 620 --------SGKRGGTGLGLTISSRLAQAMGGELSATSTP 650 (914)
T ss_pred --------CCCCCCCcccHHHHHHHHHHcCCEEEEEecC
Confidence 0123678999987655544 57776654
No 59
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=95.82 E-value=0.063 Score=64.88 Aligned_cols=87 Identities=22% Similarity=0.343 Sum_probs=54.5
Q ss_pred hhHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHHHHHHHHhhhhcccchhHHHHh
Q 007698 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKAL 185 (592)
Q Consensus 106 vfLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~L~tIa~Sgt~~f~~~l 185 (592)
-++..||+||+.+.. .+.+.|.+..+.+.-.|+|.|||+||+++++..-+...-+.++
T Consensus 565 qvl~NLl~NAik~t~---------------~G~I~I~v~~~~~~l~i~V~DtG~GI~~e~~~~lFepF~~~~~------- 622 (924)
T PRK10841 565 QVISNLLSNAIKFTD---------------TGCIVLHVRVDGDYLSFRVRDTGVGIPAKEVVRLFDPFFQVGT------- 622 (924)
T ss_pred HHHHHHHHHHHhhCC---------------CCcEEEEEEEeCCEEEEEEEEcCcCCCHHHHHHHhcccccCCC-------
Confidence 367888899888731 1345566655444457899999999999998765543221100
Q ss_pred hhcccCCCCCcccccccchhhhhhcccc----EEEEEEec
Q 007698 186 KENNDLGADNGLIGQFGVGFYSAFLVAQ----KVVVSTKS 221 (592)
Q Consensus 186 ~~~~~~~~~~~~IGqFGIGf~S~F~Vad----kV~V~Sr~ 221 (592)
......+..|+|++-|-.+++ ++.|.|..
T Consensus 623 -------~~~~~~~GtGLGL~I~k~lv~~~gG~I~v~S~~ 655 (924)
T PRK10841 623 -------GVQRNFQGTGLGLAICEKLINMMDGDISVDSEP 655 (924)
T ss_pred -------CCCCCCCCeehhHHHHHHHHHHCCCEEEEEEcC
Confidence 111223567999987765544 56666653
No 60
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=95.76 E-value=0.011 Score=56.55 Aligned_cols=87 Identities=23% Similarity=0.314 Sum_probs=53.0
Q ss_pred hhHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHHHHHHHHhhhhcccchhHHHHh
Q 007698 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKAL 185 (592)
Q Consensus 106 vfLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~L~tIa~Sgt~~f~~~l 185 (592)
.++.|++.||+....+ + .....+.|++....+.-.|.|+|+|.||+.+.+...+.. ....
T Consensus 45 lav~Ea~~Nai~Hg~~-------~----~~~~~I~I~~~~~~~~l~i~V~D~G~g~d~~~~~~~~~p---~~~~------ 104 (161)
T PRK04069 45 IAVSEACTNAVQHAYK-------E----DEVGEIHIRFEIYEDRLEIVVADNGVSFDYETLKSKLGP---YDIS------ 104 (161)
T ss_pred HHHHHHHHHHHHhccC-------C----CCCCeEEEEEEEECCEEEEEEEECCcCCChHHhccccCC---CCCC------
Confidence 4899999999998421 0 012346666666666678999999999997765432211 0000
Q ss_pred hhcccCCCCCcccccccchhhhhhccccEEEEEE
Q 007698 186 KENNDLGADNGLIGQFGVGFYSAFLVAQKVVVST 219 (592)
Q Consensus 186 ~~~~~~~~~~~~IGqFGIGf~S~F~VadkV~V~S 219 (592)
...+... .-|+|++-+-.++|++.+.+
T Consensus 105 -----~~~~~~~--~~G~GL~li~~l~d~v~~~~ 131 (161)
T PRK04069 105 -----KPIEDLR--EGGLGLFLIETLMDDVTVYK 131 (161)
T ss_pred -----CcccccC--CCceeHHHHHHHHHhEEEEc
Confidence 0001111 23778877777788877763
No 61
>PRK09835 sensor kinase CusS; Provisional
Probab=95.75 E-value=0.028 Score=61.26 Aligned_cols=79 Identities=13% Similarity=0.135 Sum_probs=47.3
Q ss_pred hHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHHHHHHHHhhhhcccchhHHHHhh
Q 007698 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKALK 186 (592)
Q Consensus 107 fLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~L~tIa~Sgt~~f~~~l~ 186 (592)
++..||.||+.+.. +...+.|++..+.+.-.|+|.|||.||+++++...+...-++.
T Consensus 379 vl~nll~Na~~~~~--------------~~~~I~i~~~~~~~~~~i~v~d~G~gi~~~~~~~if~~f~~~~--------- 435 (482)
T PRK09835 379 AISNLLSNALRYTP--------------AGEAITVRCQEVDHQVQLVVENPGTPIAPEHLPRLFDRFYRVD--------- 435 (482)
T ss_pred HHHHHHHHHHhcCC--------------CCCeEEEEEEEeCCEEEEEEEECCCCcCHHHHHHHhCCcccCC---------
Confidence 56777777776621 1233556655555556799999999999999876544322210
Q ss_pred hcccCCCCCcccccccchhhhhhcccc
Q 007698 187 ENNDLGADNGLIGQFGVGFYSAFLVAQ 213 (592)
Q Consensus 187 ~~~~~~~~~~~IGqFGIGf~S~F~Vad 213 (592)
......-+..|+|++-+-.+.+
T Consensus 436 -----~~~~~~~~g~GlGL~i~~~i~~ 457 (482)
T PRK09835 436 -----PSRQRKGEGSGIGLAIVKSIVV 457 (482)
T ss_pred -----CCCCCCCCCcchHHHHHHHHHH
Confidence 0111223567999976544433
No 62
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=95.65 E-value=0.021 Score=57.12 Aligned_cols=49 Identities=37% Similarity=0.529 Sum_probs=36.2
Q ss_pred hhHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHHHHHHH
Q 007698 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDC 169 (592)
Q Consensus 106 vfLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~ 169 (592)
..+..||+||.+|+. .+.+.|.+....+.-.|.|.|||.||+++++...
T Consensus 231 ~vl~nLi~NAi~~~~---------------~~~i~i~~~~~~~~i~i~V~D~G~Gi~~~~~~~i 279 (336)
T COG0642 231 QVLVNLLSNAIKYTP---------------GGEITISVRQDDEQVTISVEDTGPGIPEEELERI 279 (336)
T ss_pred HHHHHHHHHHhccCC---------------CCeEEEEEEecCCeEEEEEEcCCCCCCHHHHHHh
Confidence 378899999999951 2345555554443468999999999999996544
No 63
>PRK10337 sensor protein QseC; Provisional
Probab=95.64 E-value=0.03 Score=60.79 Aligned_cols=72 Identities=19% Similarity=0.224 Sum_probs=45.4
Q ss_pred hHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHHHHHHHHhhhhcccchhHHHHhh
Q 007698 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKALK 186 (592)
Q Consensus 107 fLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~L~tIa~Sgt~~f~~~l~ 186 (592)
+++.||.||+.+.. ....|.|.... ..|+|.|||.||+++++...+...-+.
T Consensus 356 vl~Nli~NA~k~~~----------------~~~~i~i~~~~--~~i~i~D~G~Gi~~~~~~~if~~f~~~---------- 407 (449)
T PRK10337 356 LVRNLLDNAIRYSP----------------QGSVVDVTLNA--RNFTVRDNGPGVTPEALARIGERFYRP---------- 407 (449)
T ss_pred HHHHHHHHHHhhCC----------------CCCeEEEEEEe--eEEEEEECCCCCCHHHHHHhcccccCC----------
Confidence 57888888887731 11234444432 379999999999999987655432211
Q ss_pred hcccCCCCCcccccccchhhhhhcccc
Q 007698 187 ENNDLGADNGLIGQFGVGFYSAFLVAQ 213 (592)
Q Consensus 187 ~~~~~~~~~~~IGqFGIGf~S~F~Vad 213 (592)
+..-.+..|+|+.-+-.+++
T Consensus 408 -------~~~~~~g~GlGL~iv~~i~~ 427 (449)
T PRK10337 408 -------PGQEATGSGLGLSIVRRIAK 427 (449)
T ss_pred -------CCCCCCccchHHHHHHHHHH
Confidence 00123458999987766654
No 64
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=95.57 E-value=0.033 Score=61.62 Aligned_cols=51 Identities=25% Similarity=0.403 Sum_probs=35.5
Q ss_pred hHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCC-cEEEEEeCCCCCCHHHHHHHHh
Q 007698 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPEN-GTITITDTGIGMTKEELVDCLG 171 (592)
Q Consensus 107 fLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~-~~L~I~DNGiGMt~eeL~~~L~ 171 (592)
++.+||.||+.+.. ..+.+.|.+..+.+. -.|.|+|||+||+.+++...+.
T Consensus 504 ~~~nli~na~~~~~--------------~~~~i~v~~~~~~~~~~~i~v~D~G~G~~~~~~~~~f~ 555 (607)
T PRK11360 504 VLLNILINAVQAIS--------------ARGKIRIRTWQYSDGQVAVSIEDNGCGIDPELLKKIFD 555 (607)
T ss_pred HHHHHHHHHHHHhc--------------CCCeEEEEEEEcCCCEEEEEEEeCCCCCCHHHHhhhcC
Confidence 56778888887742 123455655555455 6899999999999998865443
No 65
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=95.56 E-value=0.048 Score=49.87 Aligned_cols=46 Identities=28% Similarity=0.292 Sum_probs=30.4
Q ss_pred hhHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCC
Q 007698 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMT 162 (592)
Q Consensus 106 vfLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt 162 (592)
.++.||++||+.+. +. . .....+.|.+....+.-.|+|.|+|.||+
T Consensus 42 ~~l~eli~Nai~h~----~~---~----~~~~~I~v~~~~~~~~~~i~I~D~G~gi~ 87 (137)
T TIGR01925 42 TAVSEAVTNAIIHG----YE---E----NCEGVVYISATIEDHEVYITVRDEGIGIE 87 (137)
T ss_pred HHHHHHHHHHHHhc----cC---C----CCCcEEEEEEEEeCCEEEEEEEEcCCCcC
Confidence 46889999988541 11 0 01234556665555556799999999997
No 66
>PRK10490 sensor protein KdpD; Provisional
Probab=95.55 E-value=0.03 Score=67.37 Aligned_cols=77 Identities=17% Similarity=0.231 Sum_probs=48.6
Q ss_pred hHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHHHHHHHHhhhhcccchhHHHHhh
Q 007698 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKALK 186 (592)
Q Consensus 107 fLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~L~tIa~Sgt~~f~~~l~ 186 (592)
++..||+||+.+.. ....+.|.+..+.+.-.|+|.|||.||+++++..-+...-+.
T Consensus 782 VL~NLL~NAik~s~--------------~g~~I~I~~~~~~~~v~I~V~D~G~GI~~e~~~~IFepF~~~---------- 837 (895)
T PRK10490 782 VLINLLENAVKYAG--------------AQAEIGIDAHVEGERLQLDVWDNGPGIPPGQEQLIFDKFARG---------- 837 (895)
T ss_pred HHHHHHHHHHHhCC--------------CCCeEEEEEEEeCCEEEEEEEECCCCCCHHHHHHhcCCCccC----------
Confidence 57788888887731 123455555555555679999999999999987554432111
Q ss_pred hcccCCCCCcccccccchhhhhhcccc
Q 007698 187 ENNDLGADNGLIGQFGVGFYSAFLVAQ 213 (592)
Q Consensus 187 ~~~~~~~~~~~IGqFGIGf~S~F~Vad 213 (592)
......+..|+|++-|-.+++
T Consensus 838 ------~~~~~~~G~GLGL~Ivk~ive 858 (895)
T PRK10490 838 ------NKESAIPGVGLGLAICRAIVE 858 (895)
T ss_pred ------CCCCCCCCccHHHHHHHHHHH
Confidence 011123457999987766644
No 67
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=95.49 E-value=0.046 Score=61.37 Aligned_cols=76 Identities=25% Similarity=0.341 Sum_probs=50.1
Q ss_pred hhHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHHHHHHHHhhhhcccchhHHHHh
Q 007698 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKAL 185 (592)
Q Consensus 106 vfLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~L~tIa~Sgt~~f~~~l 185 (592)
+.|.=||.||.||..+ .. ....+.+.|..+.+.-.|.|.|||+||+++.... +-..|.|.+
T Consensus 430 tIlGNLidNA~eA~~~------~~-----~~k~I~l~i~~~~~~lvieV~D~G~GI~~~~~~~-iFe~G~Stk------- 490 (537)
T COG3290 430 TILGNLIDNALEALLA------PE-----ENKEIELSLSDRGDELVIEVADTGPGIPPEVRDK-IFEKGVSTK------- 490 (537)
T ss_pred HHHHHHHHHHHHHhhc------cC-----CCcEEEEEEEecCCEEEEEEeCCCCCCChHHHHH-HHhcCcccc-------
Confidence 3566799999999732 11 1244555555444445689999999999988874 444566521
Q ss_pred hhcccCCCCCcccccccchhhhhhcc
Q 007698 186 KENNDLGADNGLIGQFGVGFYSAFLV 211 (592)
Q Consensus 186 ~~~~~~~~~~~~IGqFGIGf~S~F~V 211 (592)
-.|.-|+|+|-+=..
T Consensus 491 -----------~~~~rGiGL~Lvkq~ 505 (537)
T COG3290 491 -----------NTGGRGIGLYLVKQL 505 (537)
T ss_pred -----------CCCCCchhHHHHHHH
Confidence 157789999755443
No 68
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=95.49 E-value=0.042 Score=65.25 Aligned_cols=86 Identities=19% Similarity=0.346 Sum_probs=52.8
Q ss_pred hHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCC--CC---cEEEEEeCCCCCCHHHHHHHHhhhhcccchhH
Q 007698 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDP--EN---GTITITDTGIGMTKEELVDCLGTIAQSGTSKF 181 (592)
Q Consensus 107 fLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~--~~---~~L~I~DNGiGMt~eeL~~~L~tIa~Sgt~~f 181 (592)
++..||+||+.+.. .+.+.|++.... +. -.|+|.|||+||+++++..-+...-+..
T Consensus 412 vl~NLl~NAik~~~---------------~g~v~i~v~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~---- 472 (919)
T PRK11107 412 IITNLVGNAIKFTE---------------SGNIDILVELRALSNTKVQLEVQIRDTGIGISERQQSQLFQAFRQAD---- 472 (919)
T ss_pred HHHHHHHHHhhcCC---------------CCcEEEEEEEEecCCCeeEEEEEEEEeCCCcCHHHHHHHhhhhccCC----
Confidence 57789999888731 134455554322 21 3589999999999999876554332110
Q ss_pred HHHhhhcccCCCCCcccccccchhhhhhcccc----EEEEEEec
Q 007698 182 LKALKENNDLGADNGLIGQFGVGFYSAFLVAQ----KVVVSTKS 221 (592)
Q Consensus 182 ~~~l~~~~~~~~~~~~IGqFGIGf~S~F~Vad----kV~V~Sr~ 221 (592)
.......|..|+|++-|-.+++ ++.|.|..
T Consensus 473 ----------~~~~~~~~g~GLGL~i~~~i~~~~gG~i~v~s~~ 506 (919)
T PRK11107 473 ----------ASISRRHGGTGLGLVITQKLVNEMGGDISFHSQP 506 (919)
T ss_pred ----------CCCCCCCCCcchhHHHHHHHHHHhCCEEEEEecC
Confidence 0111235678999987655544 56666654
No 69
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=95.43 E-value=0.05 Score=65.49 Aligned_cols=85 Identities=20% Similarity=0.281 Sum_probs=52.1
Q ss_pred hHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCC---CcEEEEEeCCCCCCHHHHHHHHhhhhcccchhHHH
Q 007698 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE---NGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLK 183 (592)
Q Consensus 107 fLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~---~~~L~I~DNGiGMt~eeL~~~L~tIa~Sgt~~f~~ 183 (592)
++.-||+||+.+.. .+.+.|.+..... .-.|+|.|||+||+++++..-+...-+. +
T Consensus 569 VL~NLL~NAik~t~---------------~G~I~I~v~~~~~~~~~l~I~V~DtG~GI~~e~l~~IFePF~t~-~----- 627 (894)
T PRK10618 569 ILLLLLNYAITTTA---------------YGKITLEVDQDESSPDRLTIRILDTGAGVSIKELDNLHFPFLNQ-T----- 627 (894)
T ss_pred HHHHHHHHHHHhCC---------------CCeEEEEEEEccCCCcEEEEEEEECCCCCCHHHHHHhcCccccC-C-----
Confidence 57789999988731 1344555544322 2468999999999999987654433211 0
Q ss_pred HhhhcccCCCCCcccccccchhhhhhcccc----EEEEEEec
Q 007698 184 ALKENNDLGADNGLIGQFGVGFYSAFLVAQ----KVVVSTKS 221 (592)
Q Consensus 184 ~l~~~~~~~~~~~~IGqFGIGf~S~F~Vad----kV~V~Sr~ 221 (592)
.....-+.-|+|+.-|-.+++ ++.|.|..
T Consensus 628 ---------~~~~~~~GtGLGLaI~k~Lve~~GG~I~v~S~~ 660 (894)
T PRK10618 628 ---------QGDRYGKASGLTFFLCNQLCRKLGGHLTIKSRE 660 (894)
T ss_pred ---------CCCCCCCCcChhHHHHHHHHHHcCCEEEEEECC
Confidence 011122457999876655443 67777764
No 70
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=95.17 E-value=0.053 Score=51.81 Aligned_cols=87 Identities=20% Similarity=0.276 Sum_probs=54.3
Q ss_pred hhHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHHHHHHHHhhhhcccchhHHHHh
Q 007698 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKAL 185 (592)
Q Consensus 106 vfLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~L~tIa~Sgt~~f~~~l 185 (592)
.++.|++.||+..... + ...+.+.|.+..+.+.-.|.|+|+|.||+...+...... ...
T Consensus 45 lav~Ea~~Nai~ha~~-------~----~~~~~I~I~~~~~~~~l~i~V~D~G~gfd~~~~~~~~~~---~~~------- 103 (159)
T TIGR01924 45 IAVSEACTNAVKHAYK-------E----GENGEIGISFHIYEDRLEIIVSDQGDSFDMDTFKQSLGP---YDG------- 103 (159)
T ss_pred HHHHHHHHHHHHhccC-------C----CCCCeEEEEEEEeCCEEEEEEEEcccccCchhhccccCC---CCC-------
Confidence 4899999999988410 0 012456666666666667899999999987766532211 100
Q ss_pred hhcccCCCCCcccccccchhhhhhccccEEEEEE
Q 007698 186 KENNDLGADNGLIGQFGVGFYSAFLVAQKVVVST 219 (592)
Q Consensus 186 ~~~~~~~~~~~~IGqFGIGf~S~F~VadkV~V~S 219 (592)
.........-|.|++-+=.++|.+.+.+
T Consensus 104 ------~~~~~~~~~~G~GL~Li~~L~D~v~~~~ 131 (159)
T TIGR01924 104 ------SEPIDDLREGGLGLFLIETLMDEVEVYE 131 (159)
T ss_pred ------CCCcccCCCCccCHHHHHHhccEEEEEe
Confidence 0001111234888888888899888864
No 71
>PRK03660 anti-sigma F factor; Provisional
Probab=95.12 E-value=0.093 Score=48.40 Aligned_cols=47 Identities=26% Similarity=0.302 Sum_probs=30.7
Q ss_pred hhHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCH
Q 007698 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTK 163 (592)
Q Consensus 106 vfLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~ 163 (592)
.++.|++.||+..- +. .. ....+.|++....+.-.|+|.|+|.||+.
T Consensus 42 ~~l~eli~Nai~h~----~~---~~----~~~~i~i~~~~~~~~l~i~I~D~G~g~~~ 88 (146)
T PRK03660 42 TAVSEAVTNAIIHG----YE---NN----PDGVVYIEVEIEEEELEITVRDEGKGIED 88 (146)
T ss_pred HHHHHHHHHHHHHh----cC---CC----CCCEEEEEEEECCCEEEEEEEEccCCCCh
Confidence 46899999988541 11 00 01345566655555557999999999975
No 72
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=94.69 E-value=0.081 Score=55.29 Aligned_cols=49 Identities=24% Similarity=0.270 Sum_probs=31.8
Q ss_pred hhHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCC------------CcEEEEEeCCCCCCHHHHHHH
Q 007698 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE------------NGTITITDTGIGMTKEELVDC 169 (592)
Q Consensus 106 vfLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~------------~~~L~I~DNGiGMt~eeL~~~ 169 (592)
.++..||+||++|+.. ....|.|..... .-.|.|.|||.||+.+.+...
T Consensus 240 ~vl~nLl~NA~~~~~~---------------~~~~i~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~i 300 (348)
T PRK11073 240 QVLLNIVRNALQALGP---------------EGGTITLRTRTAFQLTLHGERYRLAARIDIEDNGPGIPPHLQDTL 300 (348)
T ss_pred HHHHHHHHHHHHHhcc---------------CCCeEEEEEccccccccCCccCCceEEEEEEeCCCCCCHHHHhhc
Confidence 3688999999998520 122344432111 125899999999999877543
No 73
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=94.62 E-value=0.049 Score=61.68 Aligned_cols=55 Identities=27% Similarity=0.404 Sum_probs=39.3
Q ss_pred hHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHHHHHHHHhhh
Q 007698 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTI 173 (592)
Q Consensus 107 fLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~L~tI 173 (592)
+|--|||||.||+.- + ..+.+.|+...+.+.-.|+|+|||.|+.++-+...+.-.
T Consensus 501 VLvNLl~NALDA~~~--------~----~~~~i~i~~~~~~~~v~l~VrDnGpGi~~e~~~~lFePF 555 (603)
T COG4191 501 VLVNLLQNALDAMAG--------Q----EDRRLSIRAQREGGQVVLTVRDNGPGIAPEALPHLFEPF 555 (603)
T ss_pred HHHHHHHHHHHHhcC--------C----CCCeeEEEEEecCCeEEEEEccCCCCCCHHHHHhhcCCc
Confidence 444589999999741 1 124456666556666789999999999999887666544
No 74
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=94.35 E-value=0.11 Score=46.61 Aligned_cols=81 Identities=21% Similarity=0.304 Sum_probs=53.4
Q ss_pred hhhHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHHHHHHHHhhhhcccchhHHHH
Q 007698 105 EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKA 184 (592)
Q Consensus 105 ~vfLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~L~tIa~Sgt~~f~~~ 184 (592)
..++.|++.||+..... .. ....+.|++..+.+.-.|+|+|+|.|++...+.....
T Consensus 33 ~lav~E~~~Nav~H~~~------~~-----~~~~v~v~~~~~~~~l~i~v~D~G~~~d~~~~~~~~~------------- 88 (125)
T PF13581_consen 33 ELAVSEALTNAVEHGYP------GD-----PDGPVDVRLEVDPDRLRISVRDNGPGFDPEQLPQPDP------------- 88 (125)
T ss_pred HHHHHHHHHHHHHHcCC------CC-----CCcEEEEEEEEcCCEEEEEEEECCCCCChhhccCccc-------------
Confidence 35899999999998421 00 1234666666777778899999999998876542110
Q ss_pred hhhcccCCCCCcccccccchhhhhhccccEEEE
Q 007698 185 LKENNDLGADNGLIGQFGVGFYSAFLVAQKVVV 217 (592)
Q Consensus 185 l~~~~~~~~~~~~IGqFGIGf~S~F~VadkV~V 217 (592)
........-|.|++-+-.++|++.+
T Consensus 89 --------~~~~~~~~~G~Gl~li~~l~D~~~~ 113 (125)
T PF13581_consen 89 --------WEPDSLREGGRGLFLIRSLMDEVDY 113 (125)
T ss_pred --------ccCCCCCCCCcCHHHHHHHHcEEEE
Confidence 0012234456677767777899988
No 75
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=93.91 E-value=0.12 Score=63.80 Aligned_cols=84 Identities=21% Similarity=0.303 Sum_probs=51.0
Q ss_pred hHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEe---CCCC--cEEEEEeCCCCCCHHHHHHHHhhhhcccchhH
Q 007698 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKP---DPEN--GTITITDTGIGMTKEELVDCLGTIAQSGTSKF 181 (592)
Q Consensus 107 fLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~---d~~~--~~L~I~DNGiGMt~eeL~~~L~tIa~Sgt~~f 181 (592)
++..||.||+++.. .+.+.|.+.. +.+. -.|+|.|||+||+.+++..-+...-+.
T Consensus 832 vl~NLl~NAik~~~---------------~g~i~i~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~----- 891 (1197)
T PRK09959 832 VLSNLLSNALKFTT---------------EGAVKITTSLGHIDDNHAVIKMTIMDSGSGLSQEEQQQLFKRYSQT----- 891 (1197)
T ss_pred HHHHHHHHHHHhCC---------------CCCEEEEEEEeeecCCceEEEEEEEEcCCCCCHHHHHHhhcccccc-----
Confidence 67899999999841 1234444432 2222 357999999999999987554432111
Q ss_pred HHHhhhcccCCCCCcccccccchhhhhhcccc----EEEEEEec
Q 007698 182 LKALKENNDLGADNGLIGQFGVGFYSAFLVAQ----KVVVSTKS 221 (592)
Q Consensus 182 ~~~l~~~~~~~~~~~~IGqFGIGf~S~F~Vad----kV~V~Sr~ 221 (592)
......+..|+|++-|-.+++ ++.|.|..
T Consensus 892 -----------~~~~~~~G~GLGL~i~~~iv~~~gG~i~v~s~~ 924 (1197)
T PRK09959 892 -----------SAGRQQTGSGLGLMICKELIKNMQGDLSLESHP 924 (1197)
T ss_pred -----------ccCCCCCCcCchHHHHHHHHHHcCCEEEEEeCC
Confidence 001123568999987765544 46665543
No 76
>PRK13557 histidine kinase; Provisional
Probab=92.48 E-value=0.44 Score=52.41 Aligned_cols=54 Identities=22% Similarity=0.271 Sum_probs=32.9
Q ss_pred cEEEEEeCCCCCCHHHHHHHHhhhhcccchhHHHHhhhcccCCCCCcccccccchhhhhhcc----ccEEEEEEec
Q 007698 150 GTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLV----AQKVVVSTKS 221 (592)
Q Consensus 150 ~~L~I~DNGiGMt~eeL~~~L~tIa~Sgt~~f~~~l~~~~~~~~~~~~IGqFGIGf~S~F~V----adkV~V~Sr~ 221 (592)
-.|+|.|||.||+.+++..-+...- +. + ...+..|+|++-+-.+ +-++.|.|..
T Consensus 325 ~~i~v~D~G~Gi~~~~~~~if~~~~-~~----------------~-~~~~g~GlGL~i~~~~v~~~gG~i~~~s~~ 382 (540)
T PRK13557 325 VSIAVTDTGSGMPPEILARVMDPFF-TT----------------K-EEGKGTGLGLSMVYGFAKQSGGAVRIYSEV 382 (540)
T ss_pred EEEEEEcCCCCCCHHHHHhccCCCc-cc----------------C-CCCCCCCccHHHHHHHHHHCCCEEEEEecC
Confidence 3699999999999988765443211 10 0 1134678998765433 3356665543
No 77
>PRK10547 chemotaxis protein CheA; Provisional
Probab=92.20 E-value=0.81 Score=53.60 Aligned_cols=55 Identities=27% Similarity=0.345 Sum_probs=33.5
Q ss_pred HHhhhhcHHhHHH----HHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHHHHHH
Q 007698 108 LRELVSNASDALD----KLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVD 168 (592)
Q Consensus 108 LRELIqNA~DA~~----k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~ 168 (592)
|..||.||+|+.- .++... .| ..+.+.|+...+.+.-.|+|.|||.||+.+.+..
T Consensus 390 L~hLirNAidHgie~p~~R~~~g--kp----~~G~I~l~a~~~~~~v~I~V~DdG~GId~e~i~~ 448 (670)
T PRK10547 390 LTHLVRNSLDHGIELPEKRLAAG--KN----SVGNLILSAEHQGGNICIEVTDDGAGLNRERILA 448 (670)
T ss_pred HHHHHHHHHHhhccchhhHHhcC--CC----CCCceEEEEEEcCCEEEEEEEeCCCCCCHHHHHH
Confidence 5689999999852 111110 01 1233444444433345699999999999998764
No 78
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=92.06 E-value=0.16 Score=57.60 Aligned_cols=43 Identities=21% Similarity=0.421 Sum_probs=29.4
Q ss_pred hHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHH
Q 007698 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKE 164 (592)
Q Consensus 107 fLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~e 164 (592)
.++|+|+||..+- .+..+.|++..+.+.-.|+|.|||+||+++
T Consensus 473 il~ell~NA~kha---------------~a~~i~V~~~~~~~~~~l~V~D~G~Gi~~~ 515 (569)
T PRK10600 473 IAREALSNALKHA---------------QASEVVVTVAQNQNQVKLSVQDNGCGVPEN 515 (569)
T ss_pred HHHHHHHHHHHhC---------------CCCeEEEEEEEcCCEEEEEEEECCCCCCcc
Confidence 4778888876652 123455666555445679999999999874
No 79
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=92.01 E-value=0.14 Score=57.65 Aligned_cols=43 Identities=21% Similarity=0.241 Sum_probs=29.3
Q ss_pred hHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHH
Q 007698 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKE 164 (592)
Q Consensus 107 fLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~e 164 (592)
.+.|++.||..+. +.+.+.|++..+.+.-.|+|+|||.||+++
T Consensus 414 il~nlL~NAiKha---------------~~~~I~I~l~~~~~~i~l~V~DnG~Gi~~~ 456 (495)
T PRK11644 414 VCQEGLNNIVKHA---------------DASAVTLQGWQQDERLMLVIEDDGSGLPPG 456 (495)
T ss_pred HHHHHHHHHHHhC---------------CCCEEEEEEEEcCCEEEEEEEECCCCCCcC
Confidence 5678888887762 123455555555545679999999999853
No 80
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=91.42 E-value=0.3 Score=49.40 Aligned_cols=46 Identities=28% Similarity=0.436 Sum_probs=31.9
Q ss_pred hHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCC--cEEEEEeCCCCCCH
Q 007698 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPEN--GTITITDTGIGMTK 163 (592)
Q Consensus 107 fLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~--~~L~I~DNGiGMt~ 163 (592)
++-||++||.-.- +. . .+.+.+.|.+..+.++ ..++|+|||.|++.
T Consensus 126 iv~EL~tNa~Kha----f~--~-----~~~G~I~I~~~~~~~~~~~~l~v~deg~G~~~ 173 (221)
T COG3920 126 IVHELVTNALKHA----FL--S-----RPGGEIRITLSREGDGGRFLLTVWDEGGGPPV 173 (221)
T ss_pred HHHHHHHHHHHhc----CC--C-----CCCCEEEEEEEEcCCCCeEEEEEEECCCCCCC
Confidence 5679999998773 11 1 1235556666666664 58999999999875
No 81
>PRK13560 hypothetical protein; Provisional
Probab=90.98 E-value=0.26 Score=57.12 Aligned_cols=45 Identities=24% Similarity=0.368 Sum_probs=29.5
Q ss_pred hHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCC--C-CcEEEEEeCCCCCCHH
Q 007698 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDP--E-NGTITITDTGIGMTKE 164 (592)
Q Consensus 107 fLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~--~-~~~L~I~DNGiGMt~e 164 (592)
++.+||+||+.+... +.....|.|.... + .-.|+|.|||+||+.+
T Consensus 715 il~NLl~NAik~~~~-------------~~~~~~i~i~~~~~~~~~v~i~V~D~G~GI~~~ 762 (807)
T PRK13560 715 IISELLSNALKHAFP-------------DGAAGNIKVEIREQGDGMVNLCVADDGIGLPAG 762 (807)
T ss_pred HHHHHHHHHHHhhcc-------------CCCCceEEEEEEEcCCCEEEEEEEeCCCcCCcc
Confidence 678999999987411 1122344444322 2 3469999999999975
No 82
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=90.82 E-value=0.5 Score=54.03 Aligned_cols=54 Identities=24% Similarity=0.409 Sum_probs=39.1
Q ss_pred HhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCc--EEEEEeCCCCCCHHHHHHHHh
Q 007698 109 RELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENG--TITITDTGIGMTKEELVDCLG 171 (592)
Q Consensus 109 RELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~--~L~I~DNGiGMt~eeL~~~L~ 171 (592)
--||+||.+|+++....+. +...|++..+..++ .+.|.|||.|++.+++.+.+.
T Consensus 606 ~NliKNA~EAi~~~~~~e~---------~~~~i~~~~~~~~g~i~v~V~DNGkG~p~e~r~r~~E 661 (712)
T COG5000 606 GNLLKNAAEAIEAVEAEER---------RTALIRVSLDDADGRIVVDVIDNGKGFPRENRHRALE 661 (712)
T ss_pred HHHHHhHHHHhhhcccccC---------CcceEEEEEecCCCeEEEEEecCCCCCChHHhhhhcc
Confidence 3588999999987543321 12257777766543 579999999999999887654
No 83
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms]
Probab=90.67 E-value=0.76 Score=49.78 Aligned_cols=122 Identities=20% Similarity=0.179 Sum_probs=75.7
Q ss_pred hhhHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHHHHHHHHhhhhcccchhHHHH
Q 007698 105 EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKA 184 (592)
Q Consensus 105 ~vfLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~L~tIa~Sgt~~f~~~ 184 (592)
...+-||..||..|.-+..-. +.+ +-+++.|.|...++.-+|.|+|-|=|++..++.. |.....|....
T Consensus 262 ~ymlfElfKNamrATve~h~~--~~~----~~ppI~V~V~~gdeDl~ikISDrGGGV~~~~~dr-lf~Y~ySTa~~---- 330 (414)
T KOG0787|consen 262 YYMLFELFKNAMRATVEHHGD--DGD----ELPPIKVTVAKGDEDLLIKISDRGGGVPHRDIDR-LFSYMYSTAPA---- 330 (414)
T ss_pred HHHHHHHHHHHHHHHHHHhcc--CCC----CCCCeEEEEecCCcceEEEEecCCCCcChhHHHH-HHhhhcccCCC----
Confidence 347899999999997443211 111 1356778877777788999999999999999864 44455552211
Q ss_pred hhhcccCCCCCcccccccchhhhhhccccEEEEEEecCCCCceEEEEEecCCCceEEeecCCCCccCCCCcEEEEEeecC
Q 007698 185 LKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSSYVIREETDPEKLLKRGTQITLYLKED 264 (592)
Q Consensus 185 l~~~~~~~~~~~~IGqFGIGf~S~F~VadkV~V~Sr~~~~~~~~~W~s~~~~~~y~I~~~~~~~~~~~~GT~I~L~Lk~~ 264 (592)
... .+....+.-.||.|+.-+=.+|.. .+ |...+... .+.||.+.++||..
T Consensus 331 --~~~-d~~~~~plaGfG~GLPisrlYa~y-------f~-------------Gdl~L~Sl------eG~GTD~yI~Lk~l 381 (414)
T KOG0787|consen 331 --PSS-DNNRTAPLAGFGFGLPISRLYARY-------FG-------------GDLKLQSL------EGIGTDVYIYLKAL 381 (414)
T ss_pred --CCC-CCCCcCcccccccCCcHHHHHHHH-------hC-------------CCeeEEee------eccccceEEEeccC
Confidence 000 112245777888888655555431 11 11111111 25899999999987
Q ss_pred Cc
Q 007698 265 DK 266 (592)
Q Consensus 265 ~~ 266 (592)
..
T Consensus 382 s~ 383 (414)
T KOG0787|consen 382 SM 383 (414)
T ss_pred Cc
Confidence 66
No 84
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=90.44 E-value=1.2 Score=42.31 Aligned_cols=84 Identities=23% Similarity=0.368 Sum_probs=53.5
Q ss_pred hhhHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHHHHHHHHhhhhcccchhHHHH
Q 007698 105 EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKA 184 (592)
Q Consensus 105 ~vfLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~L~tIa~Sgt~~f~~~ 184 (592)
.+++-|++.||+.+--| .+| +.+.+.|....+.+.-.++|+|.|.|+. ++...++--
T Consensus 42 ~~av~E~~~N~v~Ha~~------~~~----~~g~I~i~~~~~~~~~~i~i~D~G~~~~--~~~~~~~~~----------- 98 (146)
T COG2172 42 AIAVSEALTNAVKHAYK------LDP----SEGEIRIEVSLDDGKLEIRIWDQGPGIE--DLEESLGPG----------- 98 (146)
T ss_pred HHHHHHHHHHHHHHHhh------cCC----CCceEEEEEEEcCCeEEEEEEeCCCCCC--CHHHhcCCC-----------
Confidence 46899999999998532 111 1245666667777778899999996654 444433321
Q ss_pred hhhcccCCCCCcccccc---cchhhhhhccccEEEEEEec
Q 007698 185 LKENNDLGADNGLIGQF---GVGFYSAFLVAQKVVVSTKS 221 (592)
Q Consensus 185 l~~~~~~~~~~~~IGqF---GIGf~S~F~VadkV~V~Sr~ 221 (592)
....+.- |.|++-+=.+.|+|.+....
T Consensus 99 ----------~~~~~~~~~~G~Gl~l~~~~~D~~~~~~~~ 128 (146)
T COG2172 99 ----------DTTAEGLQEGGLGLFLAKRLMDEFSYERSE 128 (146)
T ss_pred ----------CCCCcccccccccHHHHhhhheeEEEEecc
Confidence 1122333 67777666677888887544
No 85
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=90.32 E-value=0.3 Score=52.33 Aligned_cols=54 Identities=15% Similarity=0.350 Sum_probs=39.5
Q ss_pred HHHHHccCCCchhhHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHHHH
Q 007698 94 DLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEEL 166 (592)
Q Consensus 94 ~lL~~~LYs~~~vfLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL 166 (592)
.-+...||- +++|.|.||.-.- ++..+.|++..+.+.-.|+|.|||.|.+.+..
T Consensus 274 ~~~e~~l~r----ivQEaltN~~rHa---------------~A~~v~V~l~~~~~~l~l~V~DnG~Gf~~~~~ 327 (365)
T COG4585 274 PEAEDALFR----IVQEALTNAIRHA---------------QATEVRVTLERTDDELRLEVIDNGVGFDPDKE 327 (365)
T ss_pred hhHHHHHHH----HHHHHHHHHHhcc---------------CCceEEEEEEEcCCEEEEEEEECCcCCCcccc
Confidence 333444554 8999999998762 24567777777777788999999999886543
No 86
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=89.90 E-value=1.1 Score=48.41 Aligned_cols=59 Identities=25% Similarity=0.445 Sum_probs=39.1
Q ss_pred CCCceEEEEeCCCCcEEEEEeCCCCCCHHHHHHHHhhhhcccchhHHHHhhhcccCCCCCcccccccchhhhh
Q 007698 136 AGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSA 208 (592)
Q Consensus 136 ~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~L~tIa~Sgt~~f~~~l~~~~~~~~~~~~IGqFGIGf~S~ 208 (592)
++.+.|.+......-.|+|.|+|+|++++++..-+-++-+-.+ +.....|.=|+|++-+
T Consensus 361 Gg~Itv~~~~~~~~v~iSI~D~G~gIPk~d~~~iFdrfyRvdk--------------ARsR~~gGTGLGLaIa 419 (459)
T COG5002 361 GGRITVSVKQRETWVEISISDQGLGIPKEDLEKIFDRFYRVDK--------------ARSRKMGGTGLGLAIA 419 (459)
T ss_pred CCeEEEEEeeeCcEEEEEEccCCCCCCchhHHHHHHHHhhhhh--------------hhhhcCCCCchhHHHH
Confidence 3444444443333357899999999999999988876543311 2234578889998644
No 87
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=89.80 E-value=0.35 Score=54.39 Aligned_cols=43 Identities=26% Similarity=0.522 Sum_probs=32.8
Q ss_pred hHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHH
Q 007698 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKE 164 (592)
Q Consensus 107 fLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~e 164 (592)
.+||-++||+-.- .+..+.|.+....+.-+++|+|||+|++..
T Consensus 485 IvREAlsNa~KHa---------------~As~i~V~~~~~~g~~~~~VeDnG~Gi~~~ 527 (574)
T COG3850 485 IVREALSNAIKHA---------------QASEIKVTVSQNDGQVTLTVEDNGVGIDEA 527 (574)
T ss_pred HHHHHHHHHHHhc---------------ccCeEEEEEEecCCeEEEEEeeCCcCCCCc
Confidence 6899999998762 134566666666666789999999998764
No 88
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=87.42 E-value=1.5 Score=50.41 Aligned_cols=67 Identities=18% Similarity=0.339 Sum_probs=42.0
Q ss_pred ceEEEEe--CCCCcEEEEEeCCCCCCHHHHHHHHhhhhcccchhHHHHhhhcccCCCCCcccccccchhhhhhcccc---
Q 007698 139 LEIRIKP--DPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQ--- 213 (592)
Q Consensus 139 ~~I~I~~--d~~~~~L~I~DNGiGMt~eeL~~~L~tIa~Sgt~~f~~~l~~~~~~~~~~~~IGqFGIGf~S~F~Vad--- 213 (592)
..|.|.. -.+..++.|.|||+|++.+-+.+-+.-.-+-+ .....-| -|+|+.-|-.++.
T Consensus 657 ~~i~I~~~r~ed~~t~sV~dng~Gi~~a~~~riF~iFqRl~---------------s~~~y~g-tG~GL~I~kkI~e~H~ 720 (750)
T COG4251 657 PDIEISAERQEDEWTFSVRDNGIGIDPAYFERIFVIFQRLH---------------SRDEYLG-TGLGLAICKKIAERHQ 720 (750)
T ss_pred CceEEeeeccCCceEEEecCCCCCcCHHHHHHHHHHHHhcC---------------chhhhcC-CCccHHHHHHHHHHhC
Confidence 3455543 34457899999999999988766543321111 2223455 8999987776655
Q ss_pred -EEEEEEec
Q 007698 214 -KVVVSTKS 221 (592)
Q Consensus 214 -kV~V~Sr~ 221 (592)
++.|.|+.
T Consensus 721 G~i~vEs~~ 729 (750)
T COG4251 721 GRIWVESTP 729 (750)
T ss_pred ceEEEeecC
Confidence 45555553
No 89
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=86.76 E-value=3.3 Score=49.14 Aligned_cols=75 Identities=19% Similarity=0.261 Sum_probs=50.7
Q ss_pred hHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHHHHHHHHhhhhcccchhHHHHhh
Q 007698 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKALK 186 (592)
Q Consensus 107 fLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~L~tIa~Sgt~~f~~~l~ 186 (592)
+|--||.||.-.- ++...+.|....+.++-.+.|.|||-|++.+++..-|-+..+.++
T Consensus 779 VLiNLleNA~Kya--------------p~~s~I~I~~~~~~~~v~~~V~DeGpGIP~~~~~~IFD~F~r~~~-------- 836 (890)
T COG2205 779 VLINLLENALKYA--------------PPGSEIRINAGVERENVVFSVIDEGPGIPEGELERIFDKFYRGNK-------- 836 (890)
T ss_pred HHHHHHHHHHhhC--------------CCCCeEEEEEEEecceEEEEEEeCCCCCChhHHHHhhhhhhcCCC--------
Confidence 4556788877651 123446666666777778999999999999999988877655432
Q ss_pred hcccCCCCCcccccccchhhhhhcc
Q 007698 187 ENNDLGADNGLIGQFGVGFYSAFLV 211 (592)
Q Consensus 187 ~~~~~~~~~~~IGqFGIGf~S~F~V 211 (592)
.+-...-|+|++-|-.+
T Consensus 837 --------~~~~~G~GLGLsIc~~i 853 (890)
T COG2205 837 --------ESATRGVGLGLAICRGI 853 (890)
T ss_pred --------CCCCCCccccHHHHHHH
Confidence 11145567777766544
No 90
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=83.22 E-value=0.99 Score=50.53 Aligned_cols=42 Identities=26% Similarity=0.461 Sum_probs=27.0
Q ss_pred hHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeC-CCCcEEEEEeCCCCCCH
Q 007698 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPD-PENGTITITDTGIGMTK 163 (592)
Q Consensus 107 fLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d-~~~~~L~I~DNGiGMt~ 163 (592)
.+.||+.||..+. ..+.+.|.+..+ .+.-.|.|.|||+||+.
T Consensus 475 v~~nll~NA~k~~---------------~~~~i~i~~~~~~~~~~~i~V~D~G~Gi~~ 517 (565)
T PRK10935 475 IIREATLNAIKHA---------------NASEIAVSCVTNPDGEHTVSIRDDGIGIGE 517 (565)
T ss_pred HHHHHHHHHHhcC---------------CCCeEEEEEEEcCCCEEEEEEEECCcCcCC
Confidence 4678888877652 113345555444 22346899999999985
No 91
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=80.36 E-value=2.2 Score=50.40 Aligned_cols=127 Identities=23% Similarity=0.226 Sum_probs=70.2
Q ss_pred hHHhhhhcHHhHH----HHHhhhhccCCCCCCCCCCceEEEEeCCCC--cEEEEEeCCCCCCHHHHHHHHhhhhcccchh
Q 007698 107 FLRELVSNASDAL----DKLRFLSVTEPSLLGDAGDLEIRIKPDPEN--GTITITDTGIGMTKEELVDCLGTIAQSGTSK 180 (592)
Q Consensus 107 fLRELIqNA~DA~----~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~--~~L~I~DNGiGMt~eeL~~~L~tIa~Sgt~~ 180 (592)
.|.=||=||+|.. +.|+.. +..+...|.+..-..+ -.|+|+|+|-||+.+-|...-..=|-- +.+
T Consensus 436 PL~HLvRNAvDHGIE~pE~R~a~--------GKp~~G~I~L~A~~~gn~ivIev~DDG~Gid~ekI~~KAiErGli-~~~ 506 (716)
T COG0643 436 PLTHLVRNAVDHGIETPEERRAA--------GKPEEGTITLSAYHEGNNIVIEVSDDGAGIDREKIREKAIERGLI-TEE 506 (716)
T ss_pred cHHHHHhcchhccCCCHHHHHHc--------CCCCcceEEEEEEcCCCeEEEEEeeCCCCCCHHHHHHHHHHcCCC-ChH
Confidence 4567899999996 233322 1224567887764443 358999999999999987642211111 000
Q ss_pred HHHHhhhcccCCCCCcccccccchhhhhhccccEEEEEEecCCCCceE---EEEEecCCCceEEeecCCCCccCCCCcEE
Q 007698 181 FLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQY---VWEAEADSSSYVIREETDPEKLLKRGTQI 257 (592)
Q Consensus 181 f~~~l~~~~~~~~~~~~IGqFGIGf~S~F~VadkV~V~Sr~~~~~~~~---~W~s~~~~~~y~I~~~~~~~~~~~~GT~I 257 (592)
=.+.+. + -=-+.+=|...|+=+++|+=.|.+ |-+.-+ ..+.- +|...|... .+.||++
T Consensus 507 ~a~~lS-------d---~Ei~~LIF~PGFSTa~~VtdvSGR-GVGMDVVk~~I~~L--gG~I~V~S~------~G~GT~F 567 (716)
T COG0643 507 EAETLS-------D---EEILNLIFAPGFSTAEQVTDVSGR-GVGMDVVKTNIEQL--GGSISVSSE------PGKGTTF 567 (716)
T ss_pred HhccCC-------H---HHHHHHHhcCCCCcchhhhcccCC-ccCHHHHHHHHHHc--CCEEEEEec------CCCCeEE
Confidence 000011 1 011123366778888887766655 111100 12222 256666543 3689999
Q ss_pred EEEe
Q 007698 258 TLYL 261 (592)
Q Consensus 258 ~L~L 261 (592)
+|+|
T Consensus 568 ti~L 571 (716)
T COG0643 568 TIRL 571 (716)
T ss_pred EEec
Confidence 9996
No 92
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=79.39 E-value=3.4 Score=45.97 Aligned_cols=55 Identities=25% Similarity=0.288 Sum_probs=38.0
Q ss_pred CCCchhhHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCC--CcEEEEEeCCCCCCHHHHH
Q 007698 101 YSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE--NGTITITDTGIGMTKEELV 167 (592)
Q Consensus 101 Ys~~~vfLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~--~~~L~I~DNGiGMt~eeL~ 167 (592)
+-+|...|-=||.||+-|.-+.+ .+...|.|..-.. .-.+.|.|||+||++.-+.
T Consensus 348 l~~p~l~lqpLvENAi~hgi~~~------------~~~~~I~i~~~~~~~~i~i~i~Dng~g~~~~~~~ 404 (456)
T COG2972 348 LIDPKLVLQPLVENAIEHGIEPK------------RPGGSIAISAKKQDDVIQISISDNGPGIDEEKLE 404 (456)
T ss_pred ccCchHHHhHHHHHHHHHhcccC------------CCCCEEEEEEEEcCCEEEEEEeeCCCCCChhHHH
Confidence 45677788889999999973211 2334555554333 3578999999999998765
No 93
>PRK13559 hypothetical protein; Provisional
Probab=78.79 E-value=2.1 Score=45.12 Aligned_cols=46 Identities=28% Similarity=0.354 Sum_probs=26.7
Q ss_pred hHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCC--CCcEEEEEeCCCCCCH
Q 007698 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDP--ENGTITITDTGIGMTK 163 (592)
Q Consensus 107 fLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~--~~~~L~I~DNGiGMt~ 163 (592)
++.|||.||+.+.. .+ ...+.+.|.+.... +.-.|.|.|||.||..
T Consensus 271 vl~nLi~NA~k~~~------~~-----~~~g~i~v~~~~~~~~~~~~i~v~d~G~~~~~ 318 (361)
T PRK13559 271 VLHELAVNAIKHGA------LS-----ADQGRISISWKPSPEGAGFRIDWQEQGGPTPP 318 (361)
T ss_pred HHHHHHHhHHHhcc------cc-----CCCcEEEEEEEecCCCCeEEEEEECCCCCCCC
Confidence 67799999977621 01 11234444442133 2357888999998654
No 94
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]
Probab=74.07 E-value=2.1 Score=50.55 Aligned_cols=91 Identities=24% Similarity=0.323 Sum_probs=55.2
Q ss_pred hHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEE-----EEeCCCCCCHHHHHHHHhhhhcccchhH
Q 007698 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTIT-----ITDTGIGMTKEELVDCLGTIAQSGTSKF 181 (592)
Q Consensus 107 fLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~-----I~DNGiGMt~eeL~~~L~tIa~Sgt~~f 181 (592)
++-|||.||+|=+..+.-. . .-..|....|..-.-+. |.|||.||..+-+..++.....+ +.+
T Consensus 150 a~aeLldnalDEi~~~~tf--~--------~vd~I~p~~d~~i~a~~v~~~~~s~~gg~~~~~~i~~~m~l~~~~-k~e- 217 (775)
T KOG1845|consen 150 AIAELLDNALDEITNGATF--V--------RVDYINPVMDIFIRALVVQLKRISDDGGGMKPEVIRKCMSLGYSS-KKE- 217 (775)
T ss_pred hhhhhccccccccccccce--E--------EeeeecccccccceeEEeeccceeccccccCHHHHHHHHHhhhhh-hhh-
Confidence 6889999999986432110 0 00011111111111122 56889999999998877544332 211
Q ss_pred HHHhhhcccCCCCCcccccccchhhhhhc-cccEEEEEEec
Q 007698 182 LKALKENNDLGADNGLIGQFGVGFYSAFL-VAQKVVVSTKS 221 (592)
Q Consensus 182 ~~~l~~~~~~~~~~~~IGqFGIGf~S~F~-VadkV~V~Sr~ 221 (592)
-..-+||.|.||...-| ++..+.|.+|.
T Consensus 218 ------------~~~tv~q~~~gfktst~rlGa~~i~~~R~ 246 (775)
T KOG1845|consen 218 ------------ANSTVGQYGNGFKTSTMRLGADAIVFSRC 246 (775)
T ss_pred ------------hhhhhhhhccccccchhhhccceeEeehh
Confidence 12469999999986555 88888888884
No 95
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=73.43 E-value=6.2 Score=44.17 Aligned_cols=50 Identities=28% Similarity=0.187 Sum_probs=35.4
Q ss_pred hHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCC---CcEEEEEeCCCCCCHHHHHHHHh
Q 007698 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE---NGTITITDTGIGMTKEELVDCLG 171 (592)
Q Consensus 107 fLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~---~~~L~I~DNGiGMt~eeL~~~L~ 171 (592)
++--|+-||+|||.- .+..|.|..+.. .-.|-|.|||-|...+-+..-|.
T Consensus 568 VlvNl~~NaldA~~h---------------~~p~i~~~~~~~~~e~l~i~i~DnGqGwp~~l~dkLl~ 620 (673)
T COG4192 568 VLVNLIVNALDASTH---------------FAPWIKLIALGTEQEMLRIAIIDNGQGWPHELVDKLLT 620 (673)
T ss_pred HHHHHHHHHHhhhcc---------------CCceEEEEeecCcccceEEEEecCCCCCchhHHHHhcC
Confidence 456789999999841 224577766542 45799999999998876655443
No 96
>KOG0355 consensus DNA topoisomerase type II [Chromatin structure and dynamics]
Probab=68.57 E-value=6.5 Score=46.59 Aligned_cols=45 Identities=29% Similarity=0.490 Sum_probs=34.5
Q ss_pred hHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHHH
Q 007698 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEE 165 (592)
Q Consensus 107 fLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~ee 165 (592)
..-|.+-||.| |.| +| .--.|.+.++++.+.|.|.+||-|+.-+.
T Consensus 57 i~dEilvNaad---k~r-----d~------~m~~i~v~i~~e~~~isv~nnGkGIPv~~ 101 (842)
T KOG0355|consen 57 IFDEILVNAAD---KQR-----DP------KMNTIKVTIDKEKNEISVYNNGKGIPVTI 101 (842)
T ss_pred HHHHHhhcccc---ccc-----CC------CcceeEEEEccCCCEEEEEeCCCcceeee
Confidence 66799999999 322 22 22368888899999999999999997543
No 97
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=50.77 E-value=19 Score=39.44 Aligned_cols=28 Identities=25% Similarity=0.393 Sum_probs=21.1
Q ss_pred CCCceEEEEeCCCCcEEEEEeCCCCCCH
Q 007698 136 AGDLEIRIKPDPENGTITITDTGIGMTK 163 (592)
Q Consensus 136 ~~~~~I~I~~d~~~~~L~I~DNGiGMt~ 163 (592)
+.++.|.+..+.+.-.+.|+|||+|++.
T Consensus 428 AS~V~i~l~~~~e~l~Lei~DdG~Gl~~ 455 (497)
T COG3851 428 ASAVTIQLWQQDERLMLEIEDDGSGLPP 455 (497)
T ss_pred cceEEEEEeeCCcEEEEEEecCCcCCCC
Confidence 3566777776665567999999999763
No 98
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]
Probab=48.65 E-value=10 Score=44.95 Aligned_cols=51 Identities=25% Similarity=0.447 Sum_probs=32.9
Q ss_pred EEEEeCCCCCCHHHHHHHHhhhhcccchhHHHHhhhcccCCCCCcccccccchhhhhhc-cccEEEEEEec
Q 007698 152 ITITDTGIGMTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFL-VAQKVVVSTKS 221 (592)
Q Consensus 152 L~I~DNGiGMt~eeL~~~L~tIa~Sgt~~f~~~l~~~~~~~~~~~~IGqFGIGf~S~F~-VadkV~V~Sr~ 221 (592)
++..|+|.||+.+++.....- + .....||++|=|+.|.-| .++.+.+.|+.
T Consensus 2 l~~~Ddg~Gms~d~a~~~~~f-~------------------~~~~~ig~ygnG~ksgs~r~gkd~~~~tk~ 53 (775)
T KOG1845|consen 2 LCFLDDGLGMSPDEAPKAINF-A------------------VGLYGIGDYGNGLKSGSMRIGKDFILFTKK 53 (775)
T ss_pred cccccCCCCcCchhhhhhhhh-c------------------ccccccccccCcccccccccCcccceeecc
Confidence 567899999999999865431 1 223457777777665533 55455555554
No 99
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=43.47 E-value=29 Score=37.62 Aligned_cols=53 Identities=19% Similarity=0.305 Sum_probs=33.0
Q ss_pred CCchhhHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEe--CCCCcEEEEEeCCCCCCHHHHH
Q 007698 102 SHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKP--DPENGTITITDTGIGMTKEELV 167 (592)
Q Consensus 102 s~~~vfLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~--d~~~~~L~I~DNGiGMt~eeL~ 167 (592)
+...+++--.+|-|.-.+++- ++..+|.|.+ ..+.-+++|+|||.|++-.+..
T Consensus 354 ~e~~talyRv~QEaltNIErH-------------a~Atrv~ill~~~~d~vql~vrDnG~GF~~~~~~ 408 (459)
T COG4564 354 PEVATALYRVVQEALTNIERH-------------AGATRVTILLQQMGDMVQLMVRDNGVGFSVKEAL 408 (459)
T ss_pred cHHHHHHHHHHHHHHHHHHhh-------------cCCeEEEEEeccCCcceEEEEecCCCCccchhhc
Confidence 334445555666666666541 1344555554 4445689999999999876653
No 100
>cd03486 MutL_Trans_MLH3 MutL_Trans_MLH3: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to yeast and human MLH3 (MutL homologue 3). MLH3 belongs to the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. MLH1 forms heterodimers with MLH3. The MLH1-MLH3 complex plays a role in meiosis. A role for hMLH1-hMLH3 in DNA mismatch repair (MMR) has not been established. It has been suggested that hMLH3 may be a low risk gene for colorectal cancer; however there is little evidence to support it having a role in classical HNPCC.
Probab=37.80 E-value=54 Score=30.65 Aligned_cols=51 Identities=14% Similarity=0.138 Sum_probs=31.5
Q ss_pred HHHHhhc-CCCCCccccccccccceEEEEEEEeeCCCCCCccccccccccCeEEEeeceeecc
Q 007698 358 FYKKTFN-EFLDPLAYTHFTTEGEVEFRSVLYIPGMGPLNNEEIMNPKTKNIRLYVKRVFISD 419 (592)
Q Consensus 358 Fyk~~~~-~~~dpL~~~h~~~eg~~~~~~llyiP~~~p~~~~~~~~~~~~~i~LYv~rvfI~d 419 (592)
-...+++ +..+.|..+....+ .+.++|++.-|+.. .+..+.+|||++.|.+
T Consensus 5 ~i~~i~G~~~~~~l~~v~~~~~-~~~v~G~is~p~~~----------sk~~q~ifVN~R~v~~ 56 (141)
T cd03486 5 VFKQIYGLVLAQKLKEVSAKFQ-EYEVSGYISSEGHY----------SKSFQFIYVNGRLYLK 56 (141)
T ss_pred HHHHHhChhhhccEEEeecccC-cEEEEEEEcCCCCC----------CCceEEEEECCEEech
Confidence 3444553 22334444443333 38999988777631 3567899999999965
No 101
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=37.64 E-value=54 Score=26.17 Aligned_cols=57 Identities=14% Similarity=0.104 Sum_probs=38.2
Q ss_pred cceeccCC-CceeCHHHHHHhcCCCCCcEEEEecCC-HHHHhcChHHHHHHhCCCeEEEec
Q 007698 514 RFYTSKSE-EELISLDEYVENMGEKQNAIYYLATDS-LKSAKSAPFLEKLVQKDIEVRTSF 572 (592)
Q Consensus 514 rf~ts~~~-~~~~SL~eYv~rmk~~Qk~IYY~~~~s-~~~~~~sp~lE~~~~kg~EVL~~~ 572 (592)
.-||..|. ++.+++++|+++.++..=..+-+|--+ .. ..-++.+..++.|+.|+.-.
T Consensus 3 H~Ht~~S~~~~~~~~~~~~~~a~~~g~~~v~iTDh~~~~--~~~~~~~~~~~~gi~~i~G~ 61 (67)
T smart00481 3 HVHSDYSLLDGALSPEELVKRAKELGLKAIAITDHGNLF--GAVEFYKAAKKAGIKPIIGL 61 (67)
T ss_pred ccccCCccccccCCHHHHHHHHHHcCCCEEEEeeCCccc--CHHHHHHHHHHcCCeEEEEE
Confidence 45676665 677999999999887555555555433 22 12356677788899888654
No 102
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=37.10 E-value=64 Score=34.79 Aligned_cols=56 Identities=21% Similarity=0.220 Sum_probs=30.1
Q ss_pred hHHhhhhcHHhHHHHHhhhhccCCC-CCCCCCCceEEEEeCCC----CcEEEEEeCCCCCCHHHHH
Q 007698 107 FLRELVSNASDALDKLRFLSVTEPS-LLGDAGDLEIRIKPDPE----NGTITITDTGIGMTKEELV 167 (592)
Q Consensus 107 fLRELIqNA~DA~~k~r~~~~~~~~-~~~~~~~~~I~I~~d~~----~~~L~I~DNGiGMt~eeL~ 167 (592)
++--||.||..|+.- +-. +.-. .+. ..+.|++.+... .-.|.|.|||.|++.+-..
T Consensus 245 v~LNlVrNAaqA~~~-~~~--~~g~I~Lr--TR~~~q~~i~g~r~rl~l~leViDNGPGVP~~L~~ 305 (363)
T COG3852 245 VFLNLVRNAAQALGG-RAD--EGGEIILR--TRTGIQLTIAGTRYRLALPLEVIDNGPGVPPDLQD 305 (363)
T ss_pred HHHHHHHHHHHHhcC-CCC--CCceEEEE--eccceEEEccCceeEeeeeeEEecCCCCCChHHhh
Confidence 567899999999731 000 0000 000 012233333222 2358899999999875443
No 103
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=31.95 E-value=62 Score=36.73 Aligned_cols=51 Identities=24% Similarity=0.329 Sum_probs=34.8
Q ss_pred chhhHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHH
Q 007698 104 KEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKE 164 (592)
Q Consensus 104 ~~vfLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~e 164 (592)
|.-.|-=||.||+-..- +. ..+...+.|.+..+...-.|.|+|||.|..++
T Consensus 457 P~filQPLVENAIKHG~-------~~---~~~~g~V~I~V~~~d~~l~i~VeDng~li~p~ 507 (557)
T COG3275 457 PSFILQPLVENAIKHGI-------SQ---LKDTGRVTISVEKEDADLRIEVEDNGGLIQPD 507 (557)
T ss_pred chhhhhHHHHHHHHhcc-------cc---hhcCCceEEEEEEeCCeEEEEEecCCCCcCCC
Confidence 33456678889887631 11 12345667777666656789999999999987
No 104
>PF01119 DNA_mis_repair: DNA mismatch repair protein, C-terminal domain; InterPro: IPR013507 This entry represents the C-terminal domain of DNA mismatch repair proteins, such as MutL. This domain functions in promoting dimerisation []. The dimeric MutL protein has a key function in communicating mismatch recognition by MutS to downstream repair processes. Mismatch repair contributes to the overall fidelity of DNA replication by targeting mispaired bases that arise through replication errors during homologous recombination and as a result of DNA damage. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1B62_A 1NHJ_A 1BKN_B 1NHH_A 1B63_A 1NHI_A 3NA3_A 1EA6_A 1H7U_A 1H7S_B ....
Probab=31.74 E-value=51 Score=29.71 Aligned_cols=43 Identities=7% Similarity=0.122 Sum_probs=26.9
Q ss_pred CccccccccccceEEEEEEEeeCCCCCCccccccccccCeEEEeeceeeccC
Q 007698 369 PLAYTHFTTEGEVEFRSVLYIPGMGPLNNEEIMNPKTKNIRLYVKRVFISDD 420 (592)
Q Consensus 369 pL~~~h~~~eg~~~~~~llyiP~~~p~~~~~~~~~~~~~i~LYv~rvfI~d~ 420 (592)
-|..+.... +++.++|++.-|... +.....+.+|||+++|.+.
T Consensus 12 ~l~~i~~~~-~~~~i~G~is~p~~~--------~~~~~~q~ifVN~R~V~~~ 54 (119)
T PF01119_consen 12 NLIEIDSED-EDFSIEGYISKPDVS--------RSSRDRQFIFVNGRPVENK 54 (119)
T ss_dssp CEEEEEEEE-CCEEEEEEEE-SSCS--------BSSCTCEEEEETTEEE--H
T ss_pred ccEEEeccC-CCEEEEEEEECchhc--------cCCCCcEEEEeCCCeEeCh
Confidence 454444333 448899977766532 3356789999999999865
No 105
>cd03482 MutL_Trans_MutL MutL_Trans_MutL: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to Escherichia coli MutL. EcMutL belongs to the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from the ATP-binding site to the DNA breakage/reunion regions of the enzymes. It has been suggested that during initiation of DNA mismatch repair in E. coli, the mismatch recognition protein MutS recruits MutL in the presence of ATP. The MutS(ATP)-MutL ternary complex formed, then recruits the latent endonuclease MutH. Prokaryotic MutS and MutL are homodimers.
Probab=31.13 E-value=65 Score=29.41 Aligned_cols=35 Identities=14% Similarity=0.355 Sum_probs=25.6
Q ss_pred ccceEEEEEEEeeCCCCCCccccccccccCeEEEeeceeeccC
Q 007698 378 EGEVEFRSVLYIPGMGPLNNEEIMNPKTKNIRLYVKRVFISDD 420 (592)
Q Consensus 378 eg~~~~~~llyiP~~~p~~~~~~~~~~~~~i~LYv~rvfI~d~ 420 (592)
.+.+.++|++.-|... +..+..+.+|||++.|.+.
T Consensus 24 ~~~~~i~G~is~p~~~--------r~~~~~q~ifVN~R~V~~~ 58 (123)
T cd03482 24 AGGLRLSGWIALPTFA--------RSQADIQYFYVNGRMVRDK 58 (123)
T ss_pred CCCEEEEEEEeCchhc--------cCCCCcEEEEEcCcEECCh
Confidence 3458999977766542 2345789999999999764
No 106
>PF04025 DUF370: Domain of unknown function (DUF370); InterPro: IPR007169 This is a bacterial family of unknown function.
Probab=30.12 E-value=95 Score=26.36 Aligned_cols=44 Identities=18% Similarity=0.278 Sum_probs=32.1
Q ss_pred hhhHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCC----CCCHHHHH
Q 007698 105 EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGI----GMTKEELV 167 (592)
Q Consensus 105 ~vfLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGi----GMt~eeL~ 167 (592)
...+++|+|+|-+.. --|+.+.....+.+.|.|+|. +...+.|.
T Consensus 23 Sap~Krl~~~ak~~~-------------------~lIdaT~GrktrsviitdsghviLSa~~~eTi~ 70 (73)
T PF04025_consen 23 SAPIKRLIQEAKEEG-------------------KLIDATYGRKTRSVIITDSGHVILSALQPETIA 70 (73)
T ss_pred chhHHHHHHHHHHcC-------------------cEEEeeCCCceeEEEEEcCCcEEEeeCCHHHHh
Confidence 456899999988872 247777767778999999996 44554443
No 107
>COG2865 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]
Probab=26.20 E-value=1e+02 Score=34.92 Aligned_cols=103 Identities=28% Similarity=0.360 Sum_probs=62.3
Q ss_pred eeehhhHHHHHHHHHHccC--------------CCchhhHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCC
Q 007698 83 FEYQAEVSRLMDLIVHSLY--------------SHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE 148 (592)
Q Consensus 83 ~~Fq~e~~~Ll~lL~~~LY--------------s~~~vfLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~ 148 (592)
+-.+++ ++++.+.+++- .-|..+|||+|.||+=.- -| +. ....+.|.|..
T Consensus 238 l~~~v~--~~i~fikrn~~~~~~v~~l~r~~v~dyP~~alREai~NAv~HR---DY---s~-----~~~~v~I~iyd--- 301 (467)
T COG2865 238 LPEQVE--RAISFIKRNLNVPYVVEGLRRVEVWDYPLEALREAIINAVIHR---DY---SI-----RGRNVHIEIYD--- 301 (467)
T ss_pred HHHHHH--HHHHHHHHhcCCceeecceeEeecccCCHHHHHHHHHHHHHhh---cc---cc-----CCCceEEEEEC---
Confidence 344444 67777765532 238889999999998551 11 11 12355666543
Q ss_pred CcEEEEEeCC---CCCCHHHHHHHHhhhhcccchh-HHHHhhhcccCCCCCcccccccchhhhhhcccc
Q 007698 149 NGTITITDTG---IGMTKEELVDCLGTIAQSGTSK-FLKALKENNDLGADNGLIGQFGVGFYSAFLVAQ 213 (592)
Q Consensus 149 ~~~L~I~DNG---iGMt~eeL~~~L~tIa~Sgt~~-f~~~l~~~~~~~~~~~~IGqFGIGf~S~F~Vad 213 (592)
..|.|+-.| .||+.+++.+. .|-.+. -+.++= .+..+|=+.|.|+-=.|-.+.
T Consensus 302 -DRieI~NPGgl~~gi~~~~l~~~-----~s~~RNp~LA~~l------~~~~liE~~GSGi~rm~~~~~ 358 (467)
T COG2865 302 -DRIEITNPGGLPPGITPEDLLKG-----RSKSRNPVLAKVL------RDMGLIEERGSGIRRMFDLME 358 (467)
T ss_pred -CeEEEECCCCCCCCCChhHcccC-----CCcccCHHHHHHH------HHhhhHHHhCccHHHHHHHHH
Confidence 378999877 58999888653 332221 111110 245789999999876666544
No 108
>PTZ00069 60S ribosomal protein L5; Provisional
Probab=25.04 E-value=71 Score=33.91 Aligned_cols=36 Identities=25% Similarity=0.600 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhhhcCChHHHHHHHHHHhhhheeeecccc
Q 007698 464 LVRKTFDMIQDISQSENKEDYKKFWENFGRFLKLGCVEDS 503 (592)
Q Consensus 464 l~~k~~~~l~~la~~e~~e~y~~f~~~f~~~lK~G~~eD~ 503 (592)
.+.-|.++.+.|.+ +|+|.|++ +|+..||.|+--|+
T Consensus 201 ~G~HVa~Ym~~Lke-edee~yk~---qFS~yik~gl~~d~ 236 (300)
T PTZ00069 201 FGKHVAEYMKQLKE-EDPDKYKK---QFSKYIKAGVGPDS 236 (300)
T ss_pred cchhHHHHHHHhhh-hChHHHHH---HHHHHHHcCCChhH
Confidence 45567777888864 67887665 88999999997764
No 109
>cd00329 TopoII_MutL_Trans MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of type II DNA topoisomerases (Topo II) and DNA mismatch repair (MutL/MLH1/PMS2) proteins. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. The GyrB dimerizes in response to ATP binding, and is homologous to the N-terminal half of eukaryotic Topo II and the ATPase fragment of MutL. Type II DNA topoisomerases catalyze the ATP-dependent transport of one DNA duplex through another, in the process generating transient double strand breaks via covalent attachments to both DNA strands at the 5' positions. Included in this group are proteins similar to human MLH1 and PMS2. MLH1 forms a heterodimer with PMS2 which functions in meiosis and in DNA mismatch
Probab=24.28 E-value=1.5e+02 Score=25.07 Aligned_cols=31 Identities=10% Similarity=0.149 Sum_probs=23.0
Q ss_pred ceEEEEEEEeeCCCCCCccccccccccCeEEEeeceeec
Q 007698 380 EVEFRSVLYIPGMGPLNNEEIMNPKTKNIRLYVKRVFIS 418 (592)
Q Consensus 380 ~~~~~~llyiP~~~p~~~~~~~~~~~~~i~LYv~rvfI~ 418 (592)
.+++.|++-.|... +.....+.+|||++++.
T Consensus 26 ~~~v~g~l~~~~~~--------~~~~~~~~~fvN~r~v~ 56 (107)
T cd00329 26 GFRVEGAISYPDSG--------RSSKDRQFSFVNGRPVR 56 (107)
T ss_pred CEEEEEEEeCCccC--------cccCCcEEEEEcCeEEc
Confidence 48888877666642 22456889999999997
No 110
>cd03484 MutL_Trans_hPMS_2_like MutL_Trans_hPMS2_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM2 (hPSM2). hPSM2 belongs to the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. Included in this group are proteins similar to yeast PMS1. The yeast MLH1-PMS1 and the human MLH1-PMS2 heterodimers play a role in meiosis. hMLH1-hPMS2 also participates in the repair of all DNA mismatch repair (MMR) substrates. Cells lacking hPMS2 have a strong mutator phenotype and display microsatellite instability (MSI). Mutation in hPMS2 causes predisposition to HPNCC and Turcot syndrome.
Probab=23.34 E-value=1.3e+02 Score=28.20 Aligned_cols=36 Identities=14% Similarity=0.198 Sum_probs=23.9
Q ss_pred cceEEEEEEEeeCCCCCCccccccccccCeEEEeeceeeccC
Q 007698 379 GEVEFRSVLYIPGMGPLNNEEIMNPKTKNIRLYVKRVFISDD 420 (592)
Q Consensus 379 g~~~~~~llyiP~~~p~~~~~~~~~~~~~i~LYv~rvfI~d~ 420 (592)
+.+.++|++--|... ..+.....+.+|||+++|.+.
T Consensus 43 ~~~~i~G~is~p~~~------~~r~~~~~q~~fVN~R~V~~~ 78 (142)
T cd03484 43 SEVKITGYISKPSHG------CGRSSSDRQFFYINGRPVDLK 78 (142)
T ss_pred CcEEEEEEECCCccc------CCCCCCCcEEEEECCeecCCH
Confidence 457888866555222 112345678999999999764
No 111
>PF14501 HATPase_c_5: GHKL domain
Probab=21.92 E-value=1.1e+02 Score=26.34 Aligned_cols=71 Identities=23% Similarity=0.276 Sum_probs=38.7
Q ss_pred hHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHHHHHHHHhhhhcccchhHHHHhh
Q 007698 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKALK 186 (592)
Q Consensus 107 fLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~L~tIa~Sgt~~f~~~l~ 186 (592)
.+-=|+.||++|+.+.. +.+.+.|.+....+.-.|+|...-.+ ++ ..+. +
T Consensus 9 il~nlldNAiea~~~~~-----------~~~~I~i~~~~~~~~~~i~i~N~~~~----~~----~~~~-~---------- 58 (100)
T PF14501_consen 9 ILGNLLDNAIEACKKYE-----------DKRFISISIREENGFLVIIIENSCEK----EI----EKLE-S---------- 58 (100)
T ss_pred HHHHHHHHHHHHHHhcC-----------CCcEEEEEEEecCCEEEEEEEECCCC----cc----cccc-c----------
Confidence 45568899999986421 12344555544443344556555333 11 1111 1
Q ss_pred hcccCCCCCcccccccchhhhhhccccE
Q 007698 187 ENNDLGADNGLIGQFGVGFYSAFLVAQK 214 (592)
Q Consensus 187 ~~~~~~~~~~~IGqFGIGf~S~F~Vadk 214 (592)
.....+..|+|+.++-.+.++
T Consensus 59 -------~~~~~~~~G~GL~~v~~i~~~ 79 (100)
T PF14501_consen 59 -------SSSKKKGHGIGLKNVKKILEK 79 (100)
T ss_pred -------cccCCCCCCcCHHHHHHHHHH
Confidence 012356789999998777663
No 112
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=20.57 E-value=1.8e+02 Score=31.34 Aligned_cols=57 Identities=18% Similarity=0.280 Sum_probs=44.8
Q ss_pred CceeCHHHHHHhcCCCCCcEEEEecCCHHHH-----------------hcChHHHHHHhCCCeEEEeccccchhhee
Q 007698 522 EELISLDEYVENMGEKQNAIYYLATDSLKSA-----------------KSAPFLEKLVQKDIEVRTSFVELYNFNFA 581 (592)
Q Consensus 522 ~~~~SL~eYv~rmk~~Qk~IYY~~~~s~~~~-----------------~~sp~lE~~~~kg~EVL~~~~~~d~~~~~ 581 (592)
.+++.++||.+-.. +=+|.|... .++|+ .++|+-.-|.+.|+-|||-.+.+|+..|.
T Consensus 212 ~e~l~f~eYl~lL~--~~Dl~~f~~-~RQQgiGnl~lLi~~G~~v~l~r~n~fwqdl~e~gv~Vlf~~d~L~~~~v~ 285 (322)
T PRK02797 212 TEKLPFDDYLALLR--QCDLGYFIF-ARQQGIGTLCLLIQLGKPVVLSRDNPFWQDLTEQGLPVLFTGDDLDEDIVR 285 (322)
T ss_pred hhhCCHHHHHHHHH--hCCEEEEee-chhhHHhHHHHHHHCCCcEEEecCCchHHHHHhCCCeEEecCCcccHHHHH
Confidence 36789999988664 456666554 33443 68899999999999999999999998875
Done!