Query 007698
Match_columns 592
No_of_seqs 308 out of 2091
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 08:15:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007698.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007698hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cg9_A ATP-dependent molecular 100.0 9E-132 3E-136 1113.9 37.8 500 80-591 3-522 (677)
2 2o1u_A Endoplasmin; GRP94, HSP 100.0 3E-119 9E-124 1012.3 37.1 476 80-591 22-501 (666)
3 1y4s_A Chaperone protein HTPG; 100.0 4E-119 1E-123 996.9 33.1 473 80-591 4-481 (559)
4 2ioq_A Chaperone protein HTPG; 100.0 5E-118 2E-122 998.8 35.5 473 80-591 4-481 (624)
5 1usu_A Heat shock protein HSP8 100.0 1E-84 3.5E-89 657.2 18.9 251 337-591 1-252 (260)
6 3pry_A Heat shock protein HSP 100.0 5.9E-84 2E-88 653.6 19.1 250 337-590 1-251 (268)
7 1hk7_A Heat shock protein HSP8 100.0 1.6E-83 5.5E-88 655.6 20.3 249 339-591 1-250 (288)
8 1y6z_A Heat shock protein, put 100.0 1.3E-82 4.5E-87 645.0 15.1 253 337-591 1-257 (263)
9 2gq0_A Chaperone protein HTPG; 100.0 8E-82 2.7E-86 647.1 20.0 248 339-590 2-252 (303)
10 3hjc_A Heat shock protein 83-1 100.0 3.6E-81 1.2E-85 673.5 18.6 255 332-590 12-267 (444)
11 3q6m_A Heat shock protein HSP 100.0 4.6E-79 1.6E-83 654.9 19.7 249 339-591 3-252 (448)
12 2cge_A ATP-dependent molecular 100.0 5.5E-79 1.9E-83 653.3 18.8 249 339-591 1-250 (405)
13 3peh_A Endoplasmin homolog; st 100.0 9.8E-60 3.4E-64 480.8 21.7 253 78-337 21-281 (281)
14 3ied_A Heat shock protein; HSP 100.0 1.5E-55 5.2E-60 442.2 18.2 209 78-294 22-271 (272)
15 1qy5_A Endoplasmin; GRP94, NEC 100.0 2.4E-55 8.3E-60 448.4 19.6 254 79-337 4-269 (269)
16 3nmq_A Heat shock protein HSP 100.0 1.5E-54 5.1E-59 434.4 22.8 213 78-299 14-226 (239)
17 3o0i_A HSP90AA1 protein; HSP90 100.0 7.6E-51 2.6E-55 411.3 22.2 218 78-304 35-252 (256)
18 3t0h_A Heat shock protein HSP 100.0 1.2E-49 3.9E-54 397.7 22.1 217 78-303 7-223 (228)
19 2gqp_A Endoplasmin; GRP94, HSP 100.0 1.4E-48 4.8E-53 392.0 20.5 212 80-296 9-221 (236)
20 1yc1_A HSP 86, heat shock prot 100.0 1.3E-45 4.5E-50 375.9 21.9 214 79-301 44-257 (264)
21 2wer_A ATP-dependent molecular 100.0 1.8E-45 6.3E-50 365.4 21.7 211 80-298 3-213 (220)
22 2ior_A Chaperone protein HTPG; 100.0 6E-42 2E-46 343.7 18.1 208 79-294 23-232 (235)
23 1b63_A MUTL; DNA mismatch repa 99.9 4.3E-22 1.5E-26 209.0 16.2 280 98-466 19-330 (333)
24 1h7s_A PMS1 protein homolog 2; 99.8 4E-20 1.4E-24 196.3 14.2 170 89-292 15-200 (365)
25 3h4l_A DNA mismatch repair pro 99.8 5.3E-19 1.8E-23 187.7 15.8 155 98-292 20-190 (367)
26 3na3_A DNA mismatch repair pro 99.8 1.9E-19 6.7E-24 189.6 11.0 275 98-466 23-333 (348)
27 3fv5_A DNA topoisomerase 4 sub 99.3 6.4E-12 2.2E-16 123.0 12.2 156 104-292 18-186 (201)
28 1s16_A Topoisomerase IV subuni 99.3 1.6E-10 5.5E-15 123.6 19.8 156 105-292 33-200 (390)
29 1kij_A DNA gyrase subunit B; t 99.2 1.2E-10 4.2E-15 124.5 16.8 154 105-289 34-197 (390)
30 3cwv_A DNA gyrase, B subunit, 99.2 5.3E-10 1.8E-14 118.8 21.3 150 104-292 31-190 (369)
31 1ei1_A DNA gyrase B, GYRB; ATP 99.1 9.6E-10 3.3E-14 117.6 18.6 150 103-289 34-198 (391)
32 1mu5_A Type II DNA topoisomera 99.0 5.3E-10 1.8E-14 122.3 9.4 153 106-289 35-200 (471)
33 2zbk_B Type 2 DNA topoisomeras 99.0 8.7E-10 3E-14 122.2 9.5 153 106-289 34-199 (530)
34 4duh_A DNA gyrase subunit B; s 98.8 1.2E-08 4.2E-13 101.0 11.5 147 104-283 36-195 (220)
35 1zxm_A TOPO IIA ATPase, DNA to 98.8 1.4E-08 4.8E-13 108.9 12.6 151 106-283 55-219 (400)
36 2q2e_B Type 2 DNA topoisomeras 98.8 3.8E-09 1.3E-13 118.9 7.6 151 105-289 39-204 (621)
37 4emv_A DNA topoisomerase IV, B 98.8 6.8E-08 2.3E-12 96.1 14.4 148 105-283 42-201 (226)
38 3lnu_A Topoisomerase IV subuni 98.5 1.1E-06 3.7E-11 94.4 14.2 149 104-283 51-211 (408)
39 3ttz_A DNA gyrase subunit B; p 98.4 1.2E-06 4.3E-11 85.3 10.6 132 104-283 32-168 (198)
40 1pvg_A DNA topoisomerase II; G 98.2 1.2E-05 4E-10 86.7 12.9 130 107-263 68-208 (418)
41 4ew8_A Sensor protein DIVL; si 97.4 0.00018 6.2E-09 70.4 6.9 74 106-213 158-231 (268)
42 1ysr_A Sensor-type histidine k 97.3 0.00021 7.2E-09 64.0 5.8 75 107-213 50-124 (150)
43 1th8_A Anti-sigma F factor; SP 97.3 0.00027 9.2E-09 63.4 6.4 84 106-220 42-125 (145)
44 2btz_A Pyruvate dehydrogenase 97.3 0.00049 1.7E-08 72.6 8.4 91 107-213 235-325 (394)
45 1id0_A PHOQ histidine kinase; 97.2 0.00036 1.2E-08 62.3 6.0 73 107-213 48-120 (152)
46 4gfh_A DNA topoisomerase 2; to 97.2 0.0014 4.8E-08 78.7 12.5 147 107-283 63-224 (1177)
47 3jz3_A Sensor protein QSEC; he 97.2 0.00028 9.5E-09 66.7 4.9 72 107-213 121-192 (222)
48 2e0a_A Pyruvate dehydrogenase 97.2 0.00059 2E-08 72.1 7.9 92 107-213 234-325 (394)
49 2q8g_A [pyruvate dehydrogenase 97.1 0.0007 2.4E-08 71.8 7.8 92 107-213 247-338 (407)
50 3a0y_A Sensor protein; ATP-LID 97.1 0.00051 1.8E-08 61.1 5.5 72 107-212 51-122 (152)
51 1y8o_A [pyruvate dehydrogenase 97.1 0.00094 3.2E-08 71.3 8.2 93 107-213 257-349 (419)
52 1bxd_A ENVZ(290-450), protein 97.1 0.0003 1E-08 63.9 3.7 75 107-213 51-125 (161)
53 3sl2_A Sensor histidine kinase 97.0 0.00038 1.3E-08 64.3 4.0 79 107-213 47-127 (177)
54 3d36_A Sporulation kinase B; G 97.0 0.00091 3.1E-08 64.0 6.8 74 107-213 127-200 (244)
55 1i58_A Chemotaxis protein CHEA 97.0 0.00081 2.8E-08 62.7 5.9 56 107-167 51-109 (189)
56 1gkz_A [3-methyl-2-oxobutanoat 96.9 0.00069 2.4E-08 71.3 5.4 99 106-213 241-348 (388)
57 2c2a_A Sensor histidine kinase 96.9 0.0009 3.1E-08 65.4 5.8 80 107-213 142-223 (258)
58 3ehh_A Sensor kinase (YOCF pro 96.9 0.0009 3.1E-08 63.4 5.4 45 107-166 134-178 (218)
59 1r62_A Nitrogen regulation pro 96.9 0.00057 2E-08 61.2 3.7 74 107-213 52-135 (160)
60 3ehg_A Sensor kinase (YOCF pro 96.5 0.0014 4.9E-08 57.5 3.8 45 107-166 44-88 (128)
61 1b3q_A Protein (chemotaxis pro 96.1 0.013 4.3E-07 61.8 8.6 55 107-167 110-168 (379)
62 3a0r_A Sensor protein; four he 96.1 0.0024 8.1E-08 64.5 2.8 48 107-168 248-295 (349)
63 3zxq_A Hypoxia sensor histidin 96.1 0.0027 9.1E-08 54.9 2.7 43 107-165 43-85 (124)
64 3zxo_A Redox sensor histidine 96.0 0.0023 8E-08 55.6 1.9 43 107-165 47-89 (129)
65 4fpp_A Phosphotransferase; fou 94.5 0.033 1.1E-06 54.7 5.2 46 107-166 150-197 (247)
66 3ke6_A Protein RV1364C/MT1410; 89.4 0.49 1.7E-05 50.0 6.6 73 106-220 300-373 (399)
67 1ixm_A SPO0B, protein (sporula 79.6 1.1 3.9E-05 42.8 3.4 54 109-170 111-166 (192)
68 2l82_A Designed protein OR32; 27.3 1.2E+02 0.0041 26.6 6.1 48 527-577 68-115 (162)
No 1
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.3e-132 Score=1113.90 Aligned_cols=500 Identities=46% Similarity=0.792 Sum_probs=439.0
Q ss_pred CceeeehhhHHHHHHHHHHccCCCchhhHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCC
Q 007698 80 GEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGI 159 (592)
Q Consensus 80 ~e~~~Fq~e~~~Ll~lL~~~LYs~~~vfLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGi 159 (592)
.|++.||+|+++||++|+++||||+++|||||||||+||++|+|++++++|+.+.+.+++.|+|.+++++++|+|+|||+
T Consensus 3 ~e~~~Fqae~~~Ll~li~~sLYsnkeifLRELIsNA~DA~~k~r~~~ltd~~~~~~~~~~~I~I~~d~~~~~I~I~DnGi 82 (677)
T 2cg9_A 3 SETFEFQAEITQLMSLIINTVYSNKEIFLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQKVLEIRDSGI 82 (677)
T ss_dssp CEEEECCCCHHHHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHTSSCTTTTTTCCCCCEEEEEEGGGTEEEEEECSC
T ss_pred ccceehhhhHHHHHHHHHHhCCCCchHHHHHHhhCHHHHHHHHHHHhccChhhccCCCCcEEEEEEeCCCCEEEEEECCC
Confidence 48999999999999999999999999999999999999999999999999998888888999999988889999999999
Q ss_pred CCCHHHHHHHHhhhhcccchhHHHHhhhcccCCCCCcccccccchhhhhhccccEEEEEEecCCCCceEEEEEecCCCce
Q 007698 160 GMTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSSY 239 (592)
Q Consensus 160 GMt~eeL~~~L~tIa~Sgt~~f~~~l~~~~~~~~~~~~IGqFGIGf~S~F~VadkV~V~Sr~~~~~~~~~W~s~~~~~~y 239 (592)
|||++||.++|++||+||++.|+++++. +.+...||||||||||+||||++|+|+||+++ +.++.|++.+ ++.|
T Consensus 83 GMt~edl~~~l~tIA~Sgt~~f~~kl~~----~~d~~~IGqFGvGFySaf~vadkV~V~Sk~~~-~~~~~W~s~g-~~~~ 156 (677)
T 2cg9_A 83 GMTKAELINNLGTIAKSGTKAFMEALSA----GADVSMIGQFGVGFYSLFLVADRVQVISKSND-DEQYIWESNA-GGSF 156 (677)
T ss_dssp CCCHHHHHGGGSSSSSCTTHHHHSCCCS----SCCCCCCCCTTCTTGGGGGTEEEEEEEEECTT-SCEEEEEECS-SSEE
T ss_pred CCCHHHHHHHHHhHhccccHHHHHhhhc----ccchhhcCCCCchhHHHhhcCcEEEEEEccCC-CceEEEEEcC-CceE
Confidence 9999999999999999999999887763 34668999999999999999999999999986 5699999985 4799
Q ss_pred EEeecCCCCccCCCCcEEEEEeecCCccCCCchhHHHHHHHHhhccCccceeeccccccccccccccC------------
Q 007698 240 VIREETDPEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEVEEEEK------------ 307 (592)
Q Consensus 240 ~I~~~~~~~~~~~~GT~I~L~Lk~~~~~e~le~~~i~~lvk~ys~fl~~PI~~~~~~~~~~~~~~~~~------------ 307 (592)
+|.+... ....++||+|+|+|++++. +|++.++|+++|++||+|++|||+++.+++.+++++++++
T Consensus 157 ti~~~~~-~~~~~~GT~I~L~Lk~d~~-e~l~~~~i~~lvkkys~fi~~PI~l~~~k~~~~~~~~~e~~~~~~~~~~e~~ 234 (677)
T 2cg9_A 157 TVTLDEV-NERIGRGTILRLFLKDDQL-EYLEEKRIKEVIKRHSEFVAYPIQLVVTKEVEKEVPIPEEEKKDEEKKDEEK 234 (677)
T ss_dssp EEEECCS-SCCCSSEEEEEEEECTTGG-GGGCHHHHHHHHHHHSTTCSSCEEECCCCCCCCC------------------
T ss_pred EEeecCC-CCCCCCCeEEEEEEcchhh-ccccHHHHHHHHHHHHhhCCCCeEEeeccccccCcCcchhhhcccccccccc
Confidence 9988521 1235799999999999999 9999999999999999999999999866654333221110
Q ss_pred CCCCCC-------CcccccccccccccccccceeeeecCCCccccCCCCCChHHHHHHHHHhhcCCCCCccccccccccc
Q 007698 308 PEEGEE-------QPEGEKKTKKTTKTEKYWDWELANETKPIWMRNPKEIEKDEYHEFYKKTFNEFLDPLAYTHFTTEGE 380 (592)
Q Consensus 308 ~~~~~~-------~~~~~~~~~~k~~~~~~~~~e~~N~~~~iW~r~~~~i~~eey~~Fyk~~~~~~~dpL~~~h~~~eg~ 380 (592)
+++.++ ++++++++++|++++++++|+.+|+.+|||+|+|++|+++||.+|||+++++|++||+|+||++||+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~e~e~iN~~~plW~r~~~eit~eeY~~FYk~l~~d~~~pl~~~H~~veg~ 314 (677)
T 2cg9_A 235 KDEDDKKPKLEEVDEEEEKKPKTKKVKEEVQEIEELNKTKPLWTRNPSDITQEEYNAFYKSISNDWEDPLYVKHFSVEGQ 314 (677)
T ss_dssp ---------------------------CCCCCBCCCCCCCCTTSSCGGGCCTTTHHHHHHHHTTCCSCCSEEEEEEECSS
T ss_pred ccccccccccccccchhhhcccccccccccccceecccCCCCcccCcccCCHHHHHHHHHHhcCCCCCchheEEeccccc
Confidence 000000 0000123456667777889999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEEeeCCCCCCccccccccccCeEEEeeceeeccCCCCCcccccccccceeccCCCCCCccchHHhhhcHHHHHH
Q 007698 381 VEFRSVLYIPGMGPLNNEEIMNPKTKNIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIM 460 (592)
Q Consensus 381 ~~~~~llyiP~~~p~~~~~~~~~~~~~i~LYv~rvfI~d~~~~~llP~~l~Fv~GVVDS~dLplNvSRE~lq~~~~l~~i 460 (592)
++|+||||||+.+||++++. ....++|+||||||||+|+|+ +|||+||+||||||||+|||||||||+||+|++|++|
T Consensus 315 ~~~~~lLyiP~~ap~d~~~~-~~~~~~ikLYv~rVfI~d~~~-~llP~yL~FvkGVVDS~DLpLNvSRE~LQ~~~~lk~I 392 (677)
T 2cg9_A 315 LEFRAILFIPKRAPFDLFES-KKKKNNIKLYVRRVFITDEAE-DLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVI 392 (677)
T ss_dssp SCEEEEEEECSSCCC----------CCSEEEETTEEEEECST-TTSCGGGTTCEEEEEESSCCCCBTTTBCCCHHHHHHH
T ss_pred ceEEEEEEEcCCCchhhhhh-hhccCCeEEEEeeeEeecChh-hhchHHHHHheeecccCCCCcccCHHHhccCHHHHHH
Confidence 99999999999999988742 234689999999999999995 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCChHHHHHHHHHHhhhheeeeccccccHHhhcccccceeccCCCceeCHHHHHHhcCCCCCc
Q 007698 461 RKRLVRKTFDMIQDISQSENKEDYKKFWENFGRFLKLGCVEDSGNHKRLAPLLRFYTSKSEEELISLDEYVENMGEKQNA 540 (592)
Q Consensus 461 rk~l~~k~~~~l~~la~~e~~e~y~~f~~~f~~~lK~G~~eD~~~~~~l~~LLrf~ts~~~~~~~SL~eYv~rmk~~Qk~ 540 (592)
|+.|++||+++|.+||+ ++++|++||++||++||+|+++|+.||++|++||||+||+++++++||+||++|||++|+.
T Consensus 393 ~~~l~kkvl~~l~~la~--~~e~y~~f~~~fg~~lK~G~~eD~~nr~~l~~llrf~ss~~~~~~~sL~eYv~rmke~Q~~ 470 (677)
T 2cg9_A 393 RKNIVKKLIEAFNEIAE--DSEQFEKFYSAFSKNIKLGVHEDTQNRAALAKLLRYNSTKSVDELTSLTDYVTRMPEHQKN 470 (677)
T ss_dssp HHHHHHHHHHHHHHHHS--CSHHHHHHHHHHHHHHHHHHHHCSSSHHHHHTTCCBEESSCTTSCBCSTTHHHHSCTTCCE
T ss_pred HHHHHHHHHHHHHHHHh--CHHHHHHHHHHHhHHhhhhhccCHHHHHHHHhheEeeecCCCCceeeHHHHHHhccccCce
Confidence 99999999999999994 6799999999999999999999999999999999999998877899999999999999999
Q ss_pred EEEEecCCHHHHhcChHHHHHHhCCCeEEEeccccchhhee-cccccCCccC
Q 007698 541 IYYLATDSLKSAKSAPFLEKLVQKDIEVRTSFVELYNFNFA-VGRHHGNDFC 591 (592)
Q Consensus 541 IYY~~~~s~~~~~~sp~lE~~~~kg~EVL~~~~~~d~~~~~-~~~~~~~~~~ 591 (592)
|||++|+|++++++|||+|.+++||+|||||++|||+||++ |++|+||+|.
T Consensus 471 IyY~t~~s~~~~~~sp~~E~~~~kg~EVl~l~~~iDe~~~~~l~e~~gk~~~ 522 (677)
T 2cg9_A 471 IYYITGESLKAVEKSPFLDALKAKNFEVLFLTDPIDEYAFTQLKEFEGKTLV 522 (677)
T ss_dssp EEEEECSCSTTTTTCGGGHHHHTTTCCEEEECSHHHHHHHGGGSCBTTBEEE
T ss_pred EEEEeCCCHHHHHhCcHHHHHHhCCceEEEeCCchHHHHHHHHHHhCCceEE
Confidence 99999999999999999999999999999999999999999 9999999983
No 2
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=100.00 E-value=2.8e-119 Score=1012.35 Aligned_cols=476 Identities=51% Similarity=0.883 Sum_probs=396.4
Q ss_pred CceeeehhhHHHHHHHHHHccCCCchhhHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCC
Q 007698 80 GEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGI 159 (592)
Q Consensus 80 ~e~~~Fq~e~~~Ll~lL~~~LYs~~~vfLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGi 159 (592)
.|++.||+|+++||++|+++||||+++|||||||||+||++|+|++++++|+.+.+++++.|+|.+++++++|+|+|||+
T Consensus 22 ~e~~~Fqaei~~Ll~li~~sLYsn~eifLRELIsNA~DA~dk~r~~~l~~~~~~~~a~~~~I~I~~d~~~~~I~I~DnGi 101 (666)
T 2o1u_A 22 SEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGV 101 (666)
T ss_dssp ------------CCSSSTTTTSSSCTTHHHHHHHHHHHHHHHHHHHTTSCTTSSSSCCCCCEEEEEETTTTEEEEEECSC
T ss_pred ccceehHHhHHHHHHHHHHhccCCchHHHHHHHhhHHHHHHHHHHHhccCchhccCCCccEEEEEEeCCCCEEEEEECCC
Confidence 58999999999999999999999999999999999999999999999999998888888999999998889999999999
Q ss_pred CCCHHHHHHHHhhhhcccchhHHHHhhhcccCC-CCCcccccccchhhhhhccccEEEEEEecCCCCceEEEEEecCCCc
Q 007698 160 GMTKEELVDCLGTIAQSGTSKFLKALKENNDLG-ADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSS 238 (592)
Q Consensus 160 GMt~eeL~~~L~tIa~Sgt~~f~~~l~~~~~~~-~~~~~IGqFGIGf~S~F~VadkV~V~Sr~~~~~~~~~W~s~~~~~~ 238 (592)
|||++||.++|++||+||++.|+++++.....+ .+...||||||||||+||||++|+|+||+++ +.++.|++.+ +.
T Consensus 102 GMt~edl~~~l~tIA~SGtk~f~~kl~~~~~~~~~d~~~IGqFGvGfySaf~vAdkV~V~Sr~~~-~~~~~W~s~g--g~ 178 (666)
T 2o1u_A 102 GMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNN-DTQHIWESDS--NE 178 (666)
T ss_dssp CCCHHHHHHHTTC-------------------------------CTTGGGGGTEEEEEEEEECTT-SCCEEEEESS--SC
T ss_pred CCCHHHHHHHHhhhcccccHHHHHHhhhcccccccchhhccCCCcHHHhHHHhcCEEEEEEeeCC-CceEEEEEeC--Ce
Confidence 999999999999999999999998887420001 4667999999999999999999999999986 4689999974 78
Q ss_pred eEEeecCCCCccCCCCcEEEEEeecCCccCCCchhHHHHHHHHhhccCccceeeccccccccccccccCCCCCCCCcccc
Q 007698 239 YVIREETDPEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEVEEEEKPEEGEEQPEGE 318 (592)
Q Consensus 239 y~I~~~~~~~~~~~~GT~I~L~Lk~~~~~e~le~~~i~~lvk~ys~fl~~PI~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (592)
|+|.+... ....++||+|+|+|++++. +|++.++|+++|++||+|+++||.++.+++.+ +
T Consensus 179 ~ti~~~~~-~~~~~~GT~I~L~Lk~d~~-Efle~~~I~~ivkkys~fi~~PI~~~~~~~~~-----------~------- 238 (666)
T 2o1u_A 179 FSVIADPR-GNTLGRGTTITLVLKEEAS-DYLELDTIKNLVKKYSQFINFPIYVWSSKTGG-----------G------- 238 (666)
T ss_dssp CEEEECTT-CCSSSSEEEEEEEECTTTT-TSSSTTHHHHHHHHHSTTCCSCEEEEECC----------------------
T ss_pred EEEEeccc-CCCCCCCeEEEEEEccchh-hhccHHHHHHHHHHHHhhCCCceEEecccccc-----------c-------
Confidence 99987642 1225799999999999999 99999999999999999999999996543110 0
Q ss_pred cccccccccccccceeeeecCCCccccCCCCCChHHHHHHHHHhhcCCCCCccccccccccceEEEEEEEeeCCCCCCcc
Q 007698 319 KKTKKTTKTEKYWDWELANETKPIWMRNPKEIEKDEYHEFYKKTFNEFLDPLAYTHFTTEGEVEFRSVLYIPGMGPLNNE 398 (592)
Q Consensus 319 ~~~~~k~~~~~~~~~e~~N~~~~iW~r~~~~i~~eey~~Fyk~~~~~~~dpL~~~h~~~eg~~~~~~llyiP~~~p~~~~ 398 (592)
.+++++|+++|+++|+|+++++++++++|.+||++++++|.+||+|+|+++||+++|+|+||+|+.+|++++
T Consensus 239 --------~~~~~~~~~iN~~~~lw~~~~~~i~~eey~~fy~~~~~d~~~pl~~ih~~~eg~~~~~gll~iP~~~p~d~~ 310 (666)
T 2o1u_A 239 --------GKTVWDWELMNDIKPIWQRPSKEVEDDEYKAFYKSFSKESDDPMAYIHFTAEGEVTFKSILFVPTSAPRGLF 310 (666)
T ss_dssp -----------CCEEEECSCCSCTTTSCTTTCCHHHHHHHHHHTTCTTSCCSEEEEEEECSSSCEEEEEEECSSCCC---
T ss_pred --------cccccceEEEecCccccccCcccccHHHHHHHHhhhccccccCeeEEEecccCcEEEEEEEEcCCCCchhhh
Confidence 012357999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred cccc-ccccCeEEEeeceeeccCCCCCcccccccccceeccCCCCCCccchHHhhhcHHHHHHHHHHHHHHHHHHHHhhh
Q 007698 399 EIMN-PKTKNIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRKTFDMIQDISQ 477 (592)
Q Consensus 399 ~~~~-~~~~~i~LYv~rvfI~d~~~~~llP~~l~Fv~GVVDS~dLplNvSRE~lq~~~~l~~irk~l~~k~~~~l~~la~ 477 (592)
+... ...++|+||||||||+|+| .+|||+||+||+|||||+|||||||||+||+|++|++||+.|++||+++|.+||+
T Consensus 311 ~~~~~~~~~~i~LYVn~vfI~d~~-~~llP~~l~FvkGvVDs~dLplNVSRE~LQ~~~~l~~I~~~l~kkv~~~l~~l~~ 389 (666)
T 2o1u_A 311 DEYGSKKSDYIKLYVRRVFITDDF-HDMMPKYLNFVKGVVDSDDLPLNVSRETLQQHKLLKVIRKKLVRKTLDMIKKIAD 389 (666)
T ss_dssp ---------CEEEEETTEEEESCC-CTTSCGGGTTCEEEEEESSSCSSSCHHHHHTCHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred hhccccccCCeEEEEcCeEeeCch-hhhhHHHHHHeeeeeCHhhCCCcccchhhccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3100 2467999999999999999 4999999999999999999999999999999999999999999999999999983
Q ss_pred cCChHHHH-HHHHHHhhhheeeeccccccHHhhcccccceeccCCCceeCHHHHHHhcCCCCCcEEEEecCCHHHHhcCh
Q 007698 478 SENKEDYK-KFWENFGRFLKLGCVEDSGNHKRLAPLLRFYTSKSEEELISLDEYVENMGEKQNAIYYLATDSLKSAKSAP 556 (592)
Q Consensus 478 ~e~~e~y~-~f~~~f~~~lK~G~~eD~~~~~~l~~LLrf~ts~~~~~~~SL~eYv~rmk~~Qk~IYY~~~~s~~~~~~sp 556 (592)
++|+ +||++||++||+|+++|..|+++|++||||+||+++++++||+||++|||++|+.|||++|+|++++++||
T Consensus 390 ----e~y~~~f~~~f~~~lK~G~~~D~~~~~~l~~ll~f~ss~~~~~~~sL~eYv~rmke~Q~~IyY~t~~~~~~~~~sp 465 (666)
T 2o1u_A 390 ----EKYNDTFWKEFGTNIKLGVIEDHSNRTRLAKLLRFQSSHHPSDITSLDQYVERMKEKQDKIYFMAGSSRKEAESSP 465 (666)
T ss_dssp ----HHHHHTHHHHHHHHHHHHHHHCGGGHHHHHTTCCEEETTSSSCEECHHHHHHHSCTTCCEEEEEECSSHHHHHTCG
T ss_pred ----HHHHHHHHHHHHHHHhhhhccCHHHHHHHHhheEeeecCCCCceeeHHHHHHhcccccceEEEEeCCCHHHHhhCc
Confidence 8999 99999999999999999999999999999999987778999999999999999999999999999999999
Q ss_pred HHHHHHhCCCeEEEeccccchhhee-cccccCCccC
Q 007698 557 FLEKLVQKDIEVRTSFVELYNFNFA-VGRHHGNDFC 591 (592)
Q Consensus 557 ~lE~~~~kg~EVL~~~~~~d~~~~~-~~~~~~~~~~ 591 (592)
|+|.|++||+|||||++||||||++ |++|+||+|.
T Consensus 466 ~~e~~~~kg~eVl~l~~~iDe~~~~~l~e~~gk~~~ 501 (666)
T 2o1u_A 466 FVERLLKKGYEVIYLTEPVDEYCIQALPEFDGKRFQ 501 (666)
T ss_dssp GGHHHHHTTCCCEEECSTHHHHHHHTCCCBTTBEEE
T ss_pred HHHHHHhCCceEEEeCCchHHHHHHHHHhcCCCceE
Confidence 9999999999999999999999999 9999999983
No 3
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=100.00 E-value=4.3e-119 Score=996.86 Aligned_cols=473 Identities=42% Similarity=0.769 Sum_probs=433.3
Q ss_pred CceeeehhhHHHHHHHHHHccCCCchhhHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCC
Q 007698 80 GEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGI 159 (592)
Q Consensus 80 ~e~~~Fq~e~~~Ll~lL~~~LYs~~~vfLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGi 159 (592)
.|++.||+++++||++|+++||+||++|||||||||+||++|+|++++++|+++.++.++.|+|.+++++++|+|.|||+
T Consensus 4 ~e~~~Fqaei~~Ll~ll~~~lYsn~~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~I~I~DnGi 83 (559)
T 1y4s_A 4 QETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGV 83 (559)
T ss_dssp CEEEECCTTHHHHHHHHHHHTGGGTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGCSCCCCCEEEEEETTTTEEEEEECSS
T ss_pred ccceeeeecHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhHhHHHhhccCchhccCCCccEEEEEEeCCCcEEEEEECCC
Confidence 48999999999999999999999999999999999999999999999999998888888999999998889999999999
Q ss_pred CCCHHHHHHHHhhhhcccchhHHHHhhhcccCCCCCcccccccchhhhhhccccEEEEEEecCCC--CceEEEEEecCCC
Q 007698 160 GMTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRS--DKQYVWEAEADSS 237 (592)
Q Consensus 160 GMt~eeL~~~L~tIa~Sgt~~f~~~l~~~~~~~~~~~~IGqFGIGf~S~F~VadkV~V~Sr~~~~--~~~~~W~s~~~~~ 237 (592)
|||++||.++|++||+||+++|+++++.. ...+...|||||+||||+||||++|+|.||+++. +.++.|++.+ ++
T Consensus 84 GMt~edl~~~l~tiA~Sg~~~f~e~l~~~--~~~~~~~iG~fGvGfyS~f~VadkV~V~Sr~~~~~~~~~~~w~s~g-~~ 160 (559)
T 1y4s_A 84 GMTRDEVIDHLGTIAKSGTKSFLESLGSD--QAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAG-EG 160 (559)
T ss_dssp CCCHHHHHHHHSCCSCCCCCCTTCC----------CCCCSSCCCSGGGHHHHEEEEEEEEECSSSCGGGEEEEEECS-SS
T ss_pred CCCHHHHHHHHhhhcccccHHHHHHhhcc--ccccccccCCCCcchhhhhhccCeEEEEEcCCCCCCCeeEEEEEeC-CC
Confidence 99999999999999999999998776532 1245679999999999999999999999999873 6799999975 57
Q ss_pred ceEEeecCCCCccCCCCcEEEEEeecCCccCCCchhHHHHHHHHhhccCccceeeccccccccccccccCCCCCCCCccc
Q 007698 238 SYVIREETDPEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEVEEEEKPEEGEEQPEG 317 (592)
Q Consensus 238 ~y~I~~~~~~~~~~~~GT~I~L~Lk~~~~~e~le~~~i~~lvk~ys~fl~~PI~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (592)
.|++.+... .++||+|+|+|++++. +|++.++|+++|++||+|+++||.++.+ + .+ +|
T Consensus 161 ~~~i~~~~~----~~~GT~I~L~Lk~d~~-Efle~~~I~~iv~kys~fi~~PI~~~~~---e---~~-----~~------ 218 (559)
T 1y4s_A 161 EYTVADITK----EDRGTEITLHLREGED-EFLDDWRVRSIISKYSDHIALPVEIEKR---E---EK-----DG------ 218 (559)
T ss_dssp EEEEEEECC----CSCEEEEEEEECTTCG-GGSCHHHHHHHHHHHHTTCSSCEEEEEE---E---CS-----TT------
T ss_pred eeEEeECCC----CCCCeEEEEEEcchhh-hcchHHHHHHHHHHHhccCCCceEEeec---c---cc-----cc------
Confidence 999987632 4799999999999999 9999999999999999999999998541 0 00 00
Q ss_pred ccccccccccccccceeeeecCCCccccCCCCCChHHHHHHHHHhhcCCCCCccccccccccceEEEEEEEeeCCCCCCc
Q 007698 318 EKKTKKTTKTEKYWDWELANETKPIWMRNPKEIEKDEYHEFYKKTFNEFLDPLAYTHFTTEGEVEFRSVLYIPGMGPLNN 397 (592)
Q Consensus 318 ~~~~~~k~~~~~~~~~e~~N~~~~iW~r~~~~i~~eey~~Fyk~~~~~~~dpL~~~h~~~eg~~~~~~llyiP~~~p~~~ 397 (592)
+ .+++|+.+|+++|+|+++++++++++|.+||++++++|.+||+|+|+++||+++|+|+||+|..+|+++
T Consensus 219 ----~------~~~~~~~in~~~~lw~~~~~~i~~e~y~~fy~~~~~d~~~~l~~ih~~~eg~~~~~gll~~P~~~p~~~ 288 (559)
T 1y4s_A 219 ----E------TVISWEKINKAQALWTRNKSEITDEEYKEFYKHIAHDFNDPLTWSHNRVEGKQEYTSLLYIPSQAPWDM 288 (559)
T ss_dssp ----S------CEEEEEECCCCCCGGGSCGGGCCHHHHHHHHHHHHTCSSCEEEEEEECCCSSSCEEEEEEEESSCCTTC
T ss_pred ----c------cccceEEEeCCccceecCcccccHHHHHHHHHhhhhhhhcCeEEEEeccCCceEEEEEEEcCCcCcchh
Confidence 0 135789999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cccccccccCeEEEeeceeeccCCCCCcccccccccceeccCCCCCCccchHHhhhcHHHHHHHHHHHHHHHHHHHHhhh
Q 007698 398 EEIMNPKTKNIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRKTFDMIQDISQ 477 (592)
Q Consensus 398 ~~~~~~~~~~i~LYv~rvfI~d~~~~~llP~~l~Fv~GVVDS~dLplNvSRE~lq~~~~l~~irk~l~~k~~~~l~~la~ 477 (592)
+. +...++|+||||||||+|+| .+|||+||+||+|||||+|||||||||+||+|+++++||+.|++||+++|.+||+
T Consensus 289 ~~--r~~~~~i~lyvn~v~I~d~~-~~llP~~l~fv~gvVDs~dlplNVSRE~lq~~~~l~~I~~~l~kkv~~~l~~l~~ 365 (559)
T 1y4s_A 289 WN--RDHKHGLKLYVQRVFIMDDA-EQFMPNYLRFVRGLIDSSDLPLNVSREILQDSTVTRNLRNALTKRVLQMLEKLAK 365 (559)
T ss_dssp SS--SSCCCCEEEEETTEEEEEEE-GGGSCGGGTTCEEEEEESSSCTTCCTTGGGGCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hh--hcccCCeEEEEcCEEeecch-hhhChHhHhheeEeeChhhCCCeeCchhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 53 44568999999999999999 5999999999999999999999999999999999999999999999999999996
Q ss_pred cCChHHHHHHHHHHhhhheeeeccccccHHhhcccccceeccCCC--ceeCHHHHHHhcCCCCCcEEEEecCCHHHHhcC
Q 007698 478 SENKEDYKKFWENFGRFLKLGCVEDSGNHKRLAPLLRFYTSKSEE--ELISLDEYVENMGEKQNAIYYLATDSLKSAKSA 555 (592)
Q Consensus 478 ~e~~e~y~~f~~~f~~~lK~G~~eD~~~~~~l~~LLrf~ts~~~~--~~~SL~eYv~rmk~~Qk~IYY~~~~s~~~~~~s 555 (592)
+||++|++||++||++||+|+++|+.|+++|++||||+||++++ +++||+||++|||++|+.|||++|+|++++++|
T Consensus 366 -~d~e~y~~f~~~f~~~lK~G~~~D~~~~~~l~~ll~f~ss~~~~~~~~~sL~eY~~rmk~~q~~IyY~t~~~~~~~~~s 444 (559)
T 1y4s_A 366 -DDAEKYQTFWQQFGLVLKEGPAEDFANQEAIAKLLRFASTHTDSSAQTVSLEDYVSRMKEGQEKIYYITADSYAAAKSS 444 (559)
T ss_dssp -HCHHHHHHHHHHHHHHHTTSTTTCGGGHHHHHTTCEEBCSSCSSSSCCEETTSSSTTCCTTCSCCBEECCSSSHHHHTC
T ss_pred -cCHHHHHHHHHHHhHHhhhhhccCHHHHHHHHHhhEeeecCCCcCCCeeeHHHHHHhccccCceEEEEeCCCHHHHhhC
Confidence 57999999999999999999999999999999999999998764 799999999999999999999999999999999
Q ss_pred hHHHHHHhCCCeEEEeccccchhhee-cccccCCccC
Q 007698 556 PFLEKLVQKDIEVRTSFVELYNFNFA-VGRHHGNDFC 591 (592)
Q Consensus 556 p~lE~~~~kg~EVL~~~~~~d~~~~~-~~~~~~~~~~ 591 (592)
||+|.+++||+|||||++||||||++ |++|+||+|.
T Consensus 445 p~~e~~~~kg~eVl~~~~~iDe~~~~~l~~~~~k~~~ 481 (559)
T 1y4s_A 445 PHLELLRKKGIEVLLLSDRIDEWMMNYLTEFDGKPFQ 481 (559)
T ss_dssp SSSHHHHHTTCCCEECCSTTHHHHHHHCCCCSSSCCB
T ss_pred hHHHHHHhCCceEEEecChHHHHHHHHHHHhCCceEE
Confidence 99999999999999999999999999 9999999984
No 4
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=100.00 E-value=5.2e-118 Score=998.84 Aligned_cols=473 Identities=42% Similarity=0.769 Sum_probs=416.1
Q ss_pred CceeeehhhHHHHHHHHHHccCCCchhhHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCC
Q 007698 80 GEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGI 159 (592)
Q Consensus 80 ~e~~~Fq~e~~~Ll~lL~~~LYs~~~vfLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGi 159 (592)
.|++.||+|+++||++|+++||+||++|||||||||+||++|+|++++++|++..++.++.|+|.+++++++|+|.|||+
T Consensus 4 ~e~~~Fqaei~~Ll~ll~~~lYsn~~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~a~~~~I~I~~d~~~~~I~I~DnGi 83 (624)
T 2ioq_A 4 QETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGV 83 (624)
T ss_dssp -----------CCHHHHHHHHSSCTTHHHHHHHHHHHHHHHHHHHHHHTSTTTTTTCCCCCEEEEEETTTTEEEEEECSC
T ss_pred ccceeeeecHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhhhhHHhhccCcccccCCCCcEEEEEEeCCCcEEEEEECCC
Confidence 47899999999999999999999999999999999999999999999999998887888899999988889999999999
Q ss_pred CCCHHHHHHHHhhhhcccchhHHHHhhhcccCCCCCcccccccchhhhhhccccEEEEEEecCC--CCceEEEEEecCCC
Q 007698 160 GMTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPR--SDKQYVWEAEADSS 237 (592)
Q Consensus 160 GMt~eeL~~~L~tIa~Sgt~~f~~~l~~~~~~~~~~~~IGqFGIGf~S~F~VadkV~V~Sr~~~--~~~~~~W~s~~~~~ 237 (592)
|||++||.++|++||+||+++|+++++.. ...+...|||||+||||+||||++|+|.||+.+ ++.++.|++.+ ++
T Consensus 84 GMt~edl~~~l~tiA~Sg~~~f~~~l~~~--~~~~~~~iG~fGvGfyS~f~VadkV~V~Sr~~~~~~~~~~~w~s~g-~~ 160 (624)
T 2ioq_A 84 GMTRDEVIDHLGTIAKSGTKSFLESLGSD--QAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAG-EG 160 (624)
T ss_dssp CCCHHHHHHHHHHHCC-----------------CCTTHHHHHHHHHHHHHHHEEEEEEEEECTTSCGGGEEEEEECS-SS
T ss_pred CCCHHHHHHHHHhhcccccHHHHHHhccc--ccccccccCCCCccHHHHHhcCCeEEEEECCCCCCCCeeEEEEEeC-CC
Confidence 99999999999999999999998887642 124667999999999999999999999999987 46799999975 47
Q ss_pred ceEEeecCCCCccCCCCcEEEEEeecCCccCCCchhHHHHHHHHhhccCccceeeccccccccccccccCCCCCCCCccc
Q 007698 238 SYVIREETDPEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEVEEEEKPEEGEEQPEG 317 (592)
Q Consensus 238 ~y~I~~~~~~~~~~~~GT~I~L~Lk~~~~~e~le~~~i~~lvk~ys~fl~~PI~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (592)
.|++.+... .++||+|+|+|++++. +|++.++|+++|++||+|+++||.++.+ + .+ +|
T Consensus 161 ~~~i~~~~~----~~~GT~I~L~Lk~d~~-Efl~~~~i~~ivkkys~fi~~PI~~~~~---e---~~-----~~------ 218 (624)
T 2ioq_A 161 EYTVADITK----EDRGTEITLHLREGED-EFLDDWRVRSIISKYSDHIALPVEIEKR---E---EK-----DG------ 218 (624)
T ss_dssp CCEEEEECC----SSSEEEEEEEECTTCG-GGGCHHHHHHHHHHHHTTCSSCEEEEEE---E---EC-----SS------
T ss_pred eEEEEECCC----CCCCeEEEEEEcchhh-hcchHHHHHHHHHHHhccCCCceEEeec---c---cc-----cc------
Confidence 899987632 4799999999999999 9999999999999999999999998541 0 00 00
Q ss_pred ccccccccccccccceeeeecCCCccccCCCCCChHHHHHHHHHhhcCCCCCccccccccccceEEEEEEEeeCCCCCCc
Q 007698 318 EKKTKKTTKTEKYWDWELANETKPIWMRNPKEIEKDEYHEFYKKTFNEFLDPLAYTHFTTEGEVEFRSVLYIPGMGPLNN 397 (592)
Q Consensus 318 ~~~~~~k~~~~~~~~~e~~N~~~~iW~r~~~~i~~eey~~Fyk~~~~~~~dpL~~~h~~~eg~~~~~~llyiP~~~p~~~ 397 (592)
+ .+++|+.+|+++|+|+++++++++++|.+||+.++++|.+||+|+|+++||+++|+|+||+|..+|+++
T Consensus 219 ----~------~~~~~~~in~~~~lw~~~~~~i~~e~y~~fy~~~~~d~~~~l~~ih~~~eg~~~~~gll~~P~~~p~~~ 288 (624)
T 2ioq_A 219 ----E------TVISWEKINKAQALWTRNKSEITDEEYKEFYKHIAHDFNDPLTWSHNRVEGKQEYTSLLYIPSQAPWDM 288 (624)
T ss_dssp ----C------EEEEEEECCCCSCTTTSCTTTCCHHHHHHHHHHHHTCCSCCSCCEEEEEESSSCEEEEEECCSSCCGGG
T ss_pred ----c------cccceEEEeCCccceEecCccchHHHHHHHHHhhccchhcCeEEEEecccceEEEEEEEEeCCcCccch
Confidence 0 135789999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cccccccccCeEEEeeceeeccCCCCCcccccccccceeccCCCCCCccchHHhhhcHHHHHHHHHHHHHHHHHHHHhhh
Q 007698 398 EEIMNPKTKNIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRKTFDMIQDISQ 477 (592)
Q Consensus 398 ~~~~~~~~~~i~LYv~rvfI~d~~~~~llP~~l~Fv~GVVDS~dLplNvSRE~lq~~~~l~~irk~l~~k~~~~l~~la~ 477 (592)
+. +...++++||||||||+|+| .+|||+||+||+|||||+|||||||||+||+|+++++||+.|++||+++|.+||+
T Consensus 289 ~~--r~~~~~i~lyvn~v~I~d~~-~~llP~~l~fv~gvVDs~dl~lNVSRE~LQ~~~~l~~I~~~l~kkv~~~l~~l~~ 365 (624)
T 2ioq_A 289 WN--RDHKHGLKLYVQRVFIMDDA-EQFMPNYLRFVRGLIDSSDLPLNVSREILQDSTVTRNLRNALTKRVLQMLEKLAK 365 (624)
T ss_dssp SS--SSCCCCEEEEESSCEEEEEE-CSSSCTTSTTCEEEEEESSSCTTCCHHHHHHSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hh--hcccCCeEEEECCEEeecch-hccchhhhhhEEEEECHhhCCCccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 53 34568999999999999999 5999999999999999999999999999999999999999999999999999996
Q ss_pred cCChHHHHHHHHHHhhhheeeeccccccHHhhcccccceeccCCC--ceeCHHHHHHhcCCCCCcEEEEecCCHHHHhcC
Q 007698 478 SENKEDYKKFWENFGRFLKLGCVEDSGNHKRLAPLLRFYTSKSEE--ELISLDEYVENMGEKQNAIYYLATDSLKSAKSA 555 (592)
Q Consensus 478 ~e~~e~y~~f~~~f~~~lK~G~~eD~~~~~~l~~LLrf~ts~~~~--~~~SL~eYv~rmk~~Qk~IYY~~~~s~~~~~~s 555 (592)
+||++|++||++||++||+|+++|+.|+++|++||||+||++++ +++||+||++|||++|+.|||++|+|++++++|
T Consensus 366 -~d~e~y~~f~~~f~~~lK~G~~~D~~~~~~l~~ll~f~ss~~~~~~~~~sL~eY~~rmke~q~~IyY~t~~~~~~~~~s 444 (624)
T 2ioq_A 366 -DDAEKYQTFWQQFGLVLKEGPAEDFANQEAIAKLLRFASTHTDSSAQTVSLEDYVSRMKEGQEKIYYITADSYAAAKSS 444 (624)
T ss_dssp -HCHHHHHHHHHHHHHHHTTHHHHCCTTHHHHHHHCCBEETTSSCSCCCBCHHHHHTTCCTTCCSEEEEECSSHHHHHHC
T ss_pred -cCHHHHHHHHHHHhHHhhhhhccCHHHHHHHHHheEeeecCCCcCCCeeeHHHHHHhccccCceEEEEeCCCHHHHhhC
Confidence 57999999999999999999999999999999999999998764 799999999999999999999999999999999
Q ss_pred hHHHHHHhCCCeEEEeccccchhhee-cccccCCccC
Q 007698 556 PFLEKLVQKDIEVRTSFVELYNFNFA-VGRHHGNDFC 591 (592)
Q Consensus 556 p~lE~~~~kg~EVL~~~~~~d~~~~~-~~~~~~~~~~ 591 (592)
||+|.+++||+|||||++||||||++ |++|+||+|.
T Consensus 445 p~~e~~~~kg~eVl~~~~~iDe~~~~~l~~~~~k~~~ 481 (624)
T 2ioq_A 445 PHLELLRKKGIEVLLLSDRIDEWMMNYLTEFDGKPFQ 481 (624)
T ss_dssp HHHHHHHHHTCCCEEECSSTHHHHTTTCCEETTEEEE
T ss_pred hHHHHHHhCCceEEEecCchHHHHHHHHHhcCCceEE
Confidence 99999999999999999999999999 9999999873
No 5
>1usu_A Heat shock protein HSP82; chaperone/complex, chaperone, activator, HSP90; 2.15A {Saccharomyces cerevisiae} SCOP: d.14.1.8 PDB: 1usv_A
Probab=100.00 E-value=1e-84 Score=657.23 Aligned_cols=251 Identities=44% Similarity=0.818 Sum_probs=233.0
Q ss_pred ecCCCccccCCCCCChHHHHHHHHHhhcCCCCCccccccccccceEEEEEEEeeCCCCCCccccccccccCeEEEeecee
Q 007698 337 NETKPIWMRNPKEIEKDEYHEFYKKTFNEFLDPLAYTHFTTEGEVEFRSVLYIPGMGPLNNEEIMNPKTKNIRLYVKRVF 416 (592)
Q Consensus 337 N~~~~iW~r~~~~i~~eey~~Fyk~~~~~~~dpL~~~h~~~eg~~~~~~llyiP~~~p~~~~~~~~~~~~~i~LYv~rvf 416 (592)
|+.+|||+|+|++||+|||.+|||+++++|++||+|+|+++||+++|+||||||+.+|+++++. +...++|+|||||||
T Consensus 1 N~~~plW~r~~~eit~EeY~eFYk~l~~d~~~PL~~iH~~veg~~~~~~lLyiP~~ap~d~~~~-~~~~~~ikLYvrrVf 79 (260)
T 1usu_A 1 GPTKPLWTRNPSDITQEEYNAFYKSISNDWEDPLYVKHFSVEGQLEFRAILFIPKRAPFDLFES-KKKKNNIKLYVRRVF 79 (260)
T ss_dssp -CCCCGGGSCGGGCCHHHHHHHHHHHHCCSSCCSEEEEEEECSSSCEEEEEEECSSCCTTTTCC-----CCEEEEETTEE
T ss_pred CCcCCcccCCcccCCHHHHHHHHHHhcCCccCCeeEEEeeccCcceeEEEEEecCCCchhhhhh-hhccCCeEEEEeeeE
Confidence 7899999999999999999999999999999999999999999999999999999999997642 234689999999999
Q ss_pred eccCCCCCcccccccccceeccCCCCCCccchHHhhhcHHHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHhhhhe
Q 007698 417 ISDDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRKTFDMIQDISQSENKEDYKKFWENFGRFLK 496 (592)
Q Consensus 417 I~d~~~~~llP~~l~Fv~GVVDS~dLplNvSRE~lq~~~~l~~irk~l~~k~~~~l~~la~~e~~e~y~~f~~~f~~~lK 496 (592)
|+|+|+ +|||+||+||||||||+|||||||||+||+|++|++||+.|++||+++|.+||+ ++++|++||++||++||
T Consensus 80 I~d~~~-~llP~yL~FvkGVVDS~DLpLNvSRE~LQ~~~~lk~I~~~l~kkvl~~l~~la~--d~e~y~~f~~~fg~~lK 156 (260)
T 1usu_A 80 ITDEAE-DLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKNIVKKLIEAFNEIAE--DSEQFEKFYSAFSKNIK 156 (260)
T ss_dssp EESCCT-TSSCGGGTTCEEEEEESSCCSCC------CCHHHHHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHH
T ss_pred eccchh-hhchHHHHHheeccccCCcCCccCHHHhcccHHHHHHHHHHHHHHHHHHHHHHh--CHHHHHHHHHHHhhhhc
Confidence 999995 999999999999999999999999999999999999999999999999999994 79999999999999999
Q ss_pred eeeccccccHHhhcccccceeccCCCceeCHHHHHHhcCCCCCcEEEEecCCHHHHhcChHHHHHHhCCCeEEEeccccc
Q 007698 497 LGCVEDSGNHKRLAPLLRFYTSKSEEELISLDEYVENMGEKQNAIYYLATDSLKSAKSAPFLEKLVQKDIEVRTSFVELY 576 (592)
Q Consensus 497 ~G~~eD~~~~~~l~~LLrf~ts~~~~~~~SL~eYv~rmk~~Qk~IYY~~~~s~~~~~~sp~lE~~~~kg~EVL~~~~~~d 576 (592)
+|+++|+.|+++|++||||+||+++++++||+||++|||++|+.|||++|+|++++++|||+|.+++||+|||||++|||
T Consensus 157 ~G~~eD~~n~~~l~~lLrf~ss~~~~~~~sL~eYv~rmke~Q~~IyY~t~~s~~~~~~sp~lE~~k~kg~EVL~l~d~iD 236 (260)
T 1usu_A 157 LGVHEDTQNRAALAKLLRYNSTKSVDELTSLTDYVTRMPEHQKNIYYITGESLKSVEKSPFLDALKAKNFEVLFLTDPID 236 (260)
T ss_dssp HHHHHCTTTHHHHHTTCEEEETTEEEEEEEHHHHHHTSCTTCCEEEEEECSSHHHHHTCTTHHHHHHTTCCEEEECSHHH
T ss_pred chhccCHHHHHHHHHhhEeeecCCCCceeeHHHHHHhccCCCceEEEEeCCCHHHHhcChHHHHHHhCCCeEEEeCCchH
Confidence 99999999999999999999998766799999999999999999999999999999999999999999999999999999
Q ss_pred hhhee-cccccCCccC
Q 007698 577 NFNFA-VGRHHGNDFC 591 (592)
Q Consensus 577 ~~~~~-~~~~~~~~~~ 591 (592)
|||++ |++|+||+|.
T Consensus 237 e~~i~~L~e~~gk~~~ 252 (260)
T 1usu_A 237 EYAFTQLKEFEGKTLV 252 (260)
T ss_dssp HHHHHHHCEETTEEEE
T ss_pred HHHHHHHHhhCCceEE
Confidence 99999 9999999983
No 6
>3pry_A Heat shock protein HSP 90-beta; structural genomics, structural genomics consortium, SGC, HE protein, chaperone; 2.28A {Homo sapiens} SCOP: d.14.1.8
Probab=100.00 E-value=5.9e-84 Score=653.57 Aligned_cols=250 Identities=45% Similarity=0.822 Sum_probs=236.3
Q ss_pred ecCCCccccCCCCCChHHHHHHHHHhhcCCCCCccccccccccceEEEEEEEeeCCCCCCccccccccccCeEEEeecee
Q 007698 337 NETKPIWMRNPKEIEKDEYHEFYKKTFNEFLDPLAYTHFTTEGEVEFRSVLYIPGMGPLNNEEIMNPKTKNIRLYVKRVF 416 (592)
Q Consensus 337 N~~~~iW~r~~~~i~~eey~~Fyk~~~~~~~dpL~~~h~~~eg~~~~~~llyiP~~~p~~~~~~~~~~~~~i~LYv~rvf 416 (592)
|+++|||+|+|++||+|||.+|||+++++|++||+|+|+++||+++|+||||||+.+||++++. +..+++|+|||||||
T Consensus 1 ~~~~plW~r~~~eit~EeY~eFYk~l~~d~~dPL~~iH~~veg~~~~~~lLyiP~~ap~d~~~~-~~~~~~ikLYv~rVf 79 (268)
T 3pry_A 1 MKTKPIWTRNPDDITQEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFIPRRAPFDLFEN-KKKKNNIKLYVRRVF 79 (268)
T ss_dssp -CCSCGGGSCGGGCCHHHHHHHHHHHHCCSSCCSEEEEEEECSSSCEEEEEEECSSCCC---------CCCEEEEETTEE
T ss_pred CCCCCCCCCChhhCCHHHHHHHHHHhcCCccCchheeeecccCCeeEEEEEEccCCCchhhhhh-hhhcCCeeEEEEEEE
Confidence 4678999999999999999999999999999999999999999999999999999999998742 235689999999999
Q ss_pred eccCCCCCcccccccccceeccCCCCCCccchHHhhhcHHHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHhhhhe
Q 007698 417 ISDDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRKTFDMIQDISQSENKEDYKKFWENFGRFLK 496 (592)
Q Consensus 417 I~d~~~~~llP~~l~Fv~GVVDS~dLplNvSRE~lq~~~~l~~irk~l~~k~~~~l~~la~~e~~e~y~~f~~~f~~~lK 496 (592)
|+|+|+ +|||+||+||||||||+|||||||||+||+|++|++||+.|++||+++|.++| +|+++|++||++||++||
T Consensus 80 I~d~~~-ellP~yL~FvkGVVDS~DLPLNVSRE~LQ~~~~lk~I~k~i~kkvl~~l~~la--~d~e~Y~~f~~~fg~~lK 156 (268)
T 3pry_A 80 IMDSCD-ELIPEYLNFIRGVVDSEDLPLNISREMLQQSKILKVIRKNIVKKCLELFSELA--EDKENYKKFYEAFSKNLK 156 (268)
T ss_dssp EESCCG-GGSCGGGTTCEEEEEESSSCSSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHH--TSHHHHHHHHHHHHHHHH
T ss_pred eecchh-hhccchhhheEEEecCCCCCccccHHHhccCHHHHHHHHHHHHHHHHHHHHHH--hCHHHHHHHHHHHHHHHH
Confidence 999995 99999999999999999999999999999999999999999999999999999 579999999999999999
Q ss_pred eeeccccccHHhhcccccceeccCCCceeCHHHHHHhcCCCCCcEEEEecCCHHHHhcChHHHHHHhCCCeEEEeccccc
Q 007698 497 LGCVEDSGNHKRLAPLLRFYTSKSEEELISLDEYVENMGEKQNAIYYLATDSLKSAKSAPFLEKLVQKDIEVRTSFVELY 576 (592)
Q Consensus 497 ~G~~eD~~~~~~l~~LLrf~ts~~~~~~~SL~eYv~rmk~~Qk~IYY~~~~s~~~~~~sp~lE~~~~kg~EVL~~~~~~d 576 (592)
+|+++|..|+++|++||||+||+++++++||+||++|||++|+.|||++|+|++++++|||+|.+++||+|||||++|||
T Consensus 157 ~G~~eD~~~~~~l~~LLrf~ss~~~~~~~SL~eYv~rmke~Q~~IyYitg~s~~~~~~sp~~E~~k~kg~EVL~l~d~iD 236 (268)
T 3pry_A 157 LGIHEDSTNRRRLSELLRYHTSQSGDEMTSLSEYVSRMKETQKSIYYITGESKEQVANSAFVERVRKRGFEVVYMTEPID 236 (268)
T ss_dssp HHHHHCGGGHHHHHHTCEEEETTTTTSCEEHHHHHHTSCTTCCEEEEECSCCHHHHHTCHHHHHHHTTTCCEEECCSTTH
T ss_pred hHhhCCHHHHHHHHHHheeeeccCCCccEeHHHHHHhcccCCceEEEEeCCCHHHHHhChHHHHHHHcCceEEEeCCchH
Confidence 99999999999999999999998877899999999999999999999999999999999999999999999999999999
Q ss_pred hhhee-cccccCCcc
Q 007698 577 NFNFA-VGRHHGNDF 590 (592)
Q Consensus 577 ~~~~~-~~~~~~~~~ 590 (592)
|||++ |++|+||+|
T Consensus 237 e~~i~~L~ef~gk~l 251 (268)
T 3pry_A 237 EYCVQQLKEFDGKSL 251 (268)
T ss_dssp HHHHHHHCEETTEEE
T ss_pred HHHHHHHHhcCCcee
Confidence 99999 999999997
No 7
>1hk7_A Heat shock protein HSP82; ATPase, chaperone; 2.5A {Saccharomyces cerevisiae} SCOP: d.14.1.8
Probab=100.00 E-value=1.6e-83 Score=655.63 Aligned_cols=249 Identities=44% Similarity=0.825 Sum_probs=232.5
Q ss_pred CCCccccCCCCCChHHHHHHHHHhhcCCCCCccccccccccceEEEEEEEeeCCCCCCccccccccccCeEEEeeceeec
Q 007698 339 TKPIWMRNPKEIEKDEYHEFYKKTFNEFLDPLAYTHFTTEGEVEFRSVLYIPGMGPLNNEEIMNPKTKNIRLYVKRVFIS 418 (592)
Q Consensus 339 ~~~iW~r~~~~i~~eey~~Fyk~~~~~~~dpL~~~h~~~eg~~~~~~llyiP~~~p~~~~~~~~~~~~~i~LYv~rvfI~ 418 (592)
++|||+|+|++||+|||.+||++++++|++||+|+|+++||+++|+||||||+.+|+++++. +...++|+||||||||+
T Consensus 1 ~~plW~r~~~eit~EeY~eFYk~l~~d~~dPL~~~H~~veg~~~~~~lLyiP~~ap~dl~~~-~~~~~~ikLYvrrVfI~ 79 (288)
T 1hk7_A 1 TKPLWTRNPSDITQEEYNAFYKSISNDWEDPLYVKHFSVEGQLEFRAILFIPKRAPFDLFES-KKKKNNIKLYVRRVFIT 79 (288)
T ss_dssp CCCGGGSCTTTCCTTHHHHHHHHHHSCCSCCSEEEEEEECSSSCEEEEEEECSSCCCCCSSS-CCCCCCCEEEETTEEEE
T ss_pred CCCcccCCchhCCHHHHHHHHHHhcCCcccCeeEEEEeccCCceeEEEEEecCCCcchhhhh-hhccCCeEEEEeeeEee
Confidence 47999999999999999999999999999999999999999999999999999999998642 22468999999999999
Q ss_pred cCCCCCcccccccccceeccCCCCCCccchHHhhhcHHHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHhhhheee
Q 007698 419 DDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRKTFDMIQDISQSENKEDYKKFWENFGRFLKLG 498 (592)
Q Consensus 419 d~~~~~llP~~l~Fv~GVVDS~dLplNvSRE~lq~~~~l~~irk~l~~k~~~~l~~la~~e~~e~y~~f~~~f~~~lK~G 498 (592)
|+|+ +|||+||+||||||||+|||||||||+||+|++|++||+.|++||+++|.++| +|+++|++||++||++||+|
T Consensus 80 d~~~-~llP~yL~FvkGVVDS~DLPLNvSRE~LQ~~~~lk~I~k~i~kkvl~~l~~la--~d~e~Y~kf~~~fg~~lK~G 156 (288)
T 1hk7_A 80 DEAE-DLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKNIVKKLIEAFNEIA--EDSEQFEKFYSAFSKNIKLG 156 (288)
T ss_dssp SSCS-SSSCGGGTTCEEEEEESSCCCC-------CCHHHHHHHHHHHHHHHHHHHHHT--TSHHHHHHHHHHHHHHHHHH
T ss_pred cchh-hhchHHHHHHhhcccccccCCcccHHHhccCHHHHHHHHHHHHHHHHHHHHHh--hCHHHHHHHHHHHhHHHhhh
Confidence 9994 99999999999999999999999999999999999999999999999999998 47999999999999999999
Q ss_pred eccccccHHhhcccccceeccCCCceeCHHHHHHhcCCCCCcEEEEecCCHHHHhcChHHHHHHhCCCeEEEeccccchh
Q 007698 499 CVEDSGNHKRLAPLLRFYTSKSEEELISLDEYVENMGEKQNAIYYLATDSLKSAKSAPFLEKLVQKDIEVRTSFVELYNF 578 (592)
Q Consensus 499 ~~eD~~~~~~l~~LLrf~ts~~~~~~~SL~eYv~rmk~~Qk~IYY~~~~s~~~~~~sp~lE~~~~kg~EVL~~~~~~d~~ 578 (592)
+++|..|+++|++||||+||+++++++||+||++||+++|+.|||++|+|++++++|||+|.+++||+|||||++|||||
T Consensus 157 i~eD~~nr~~l~~LLrf~ss~~~~~~~SL~eYv~rmke~Qk~IYYitg~s~~~~~~sp~lE~~k~kg~EVL~l~d~iDe~ 236 (288)
T 1hk7_A 157 VHEDTQNRAALAKLLRYNSTKSVDELTSLTDYVTRMPEHQKNIYYITGESLKAVEKSPFLDALKAKNFEVLFLTDPIDEY 236 (288)
T ss_dssp HHHCTTTHHHHHTTCCBEESSCSSSCBCHHHHHHHSCTTCCEEEEEECSSHHHHHTCGGGHHHHTTTCCCEEECSHHHHH
T ss_pred hcccHHHHHHHHHHhccccccCCCCcccHHHHHhhCcCCCceEEEEeCCCHHHHhcCHHHHHHHHCCCEEEEecCchHHH
Confidence 99999999999999999999887789999999999999999999999999999999999999999999999999999999
Q ss_pred hee-cccccCCccC
Q 007698 579 NFA-VGRHHGNDFC 591 (592)
Q Consensus 579 ~~~-~~~~~~~~~~ 591 (592)
|++ |++|+||+|.
T Consensus 237 ~i~~L~e~~gk~~~ 250 (288)
T 1hk7_A 237 AFTQLKEFEGKTLV 250 (288)
T ss_dssp HHHHHCEETTEEEE
T ss_pred HHhhhhhcCCceee
Confidence 999 9999999983
No 8
>1y6z_A Heat shock protein, putative; chaperone, structural genomics, structural genom consortium, SGC, unknown function; 1.88A {Plasmodium falciparum}
Probab=100.00 E-value=1.3e-82 Score=644.98 Aligned_cols=253 Identities=41% Similarity=0.805 Sum_probs=224.3
Q ss_pred ecCCCccccCCCCCChHHHHHHHHHhhcCCCCCccccccccccceEEEEEEEeeCCCCCCccc-cccccccCeEEEeece
Q 007698 337 NETKPIWMRNPKEIEKDEYHEFYKKTFNEFLDPLAYTHFTTEGEVEFRSVLYIPGMGPLNNEE-IMNPKTKNIRLYVKRV 415 (592)
Q Consensus 337 N~~~~iW~r~~~~i~~eey~~Fyk~~~~~~~dpL~~~h~~~eg~~~~~~llyiP~~~p~~~~~-~~~~~~~~i~LYv~rv 415 (592)
|+.+|||+|+|++||+|||.+|||+++++|++||+|+|+++||+++|+||||||+.+||+++. ..+...++|+||||||
T Consensus 1 N~~~plW~r~~~eit~eeY~eFYk~l~~~~~~PL~~iH~~veg~~~~~~lLyiP~~ap~d~~~~~~~~~~~~ikLYvrrV 80 (263)
T 1y6z_A 1 GHQLPIWKQDEKSLTENDYYSFYKNTFKAYDDPLAYVHFNVEGQISFNSILYIPGSLPWELSKNMFDEESRGIRLYVKRV 80 (263)
T ss_dssp ----CGGGSCTTSCCHHHHHHHHHHHHTCCSCCSEEEEEEEESSSEEEEEEEECSSCCHHHHHCCC----CCEEEEETTE
T ss_pred CCcCCCcCCCcccCCHHHHHHHHHHhcCCccCcceeEEeccCCccceEEEEEecCCCchhhhhhhhHhhhcCeeEEEeee
Confidence 788999999999999999999999999999999999999999999999999999999998643 1223468999999999
Q ss_pred eeccCCCCCcccccccccceeccCCCCCCccchHHhhhcHHHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHhhhh
Q 007698 416 FISDDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRKTFDMIQDISQSENKEDYKKFWENFGRFL 495 (592)
Q Consensus 416 fI~d~~~~~llP~~l~Fv~GVVDS~dLplNvSRE~lq~~~~l~~irk~l~~k~~~~l~~la~~e~~e~y~~f~~~f~~~l 495 (592)
||+|+|+ +|||+||+||||||||+|||||||||+||+|++|++||+.|++||+++|.++|+ +|+|+|++||++||++|
T Consensus 81 fI~d~~~-~llP~yL~FvkGVVDS~DLpLNvSRE~LQ~~~~l~~Irk~l~kkvl~~l~~la~-~d~e~y~kf~~~fg~~l 158 (263)
T 1y6z_A 81 FINDKFS-ESIPRWLTFLRGIVDSENLPLNVGREILQKSKMLSIINKRIVLKSISMMKGLKE-TGGDKWTKFLNTFGKYL 158 (263)
T ss_dssp EEESCGG-GGSCGGGTTCEEEEEECC------------CTTHHHHHHHHHHHHHHHHHHHHH-HCSHHHHHHHHHHHHHH
T ss_pred Eeecchh-hhchHHHHHHeeccccccCCCccchhhhcccHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHhHHH
Confidence 9999994 999999999999999999999999999999999999999999999999999996 46899999999999999
Q ss_pred eeeeccccccHHhhcccccceeccCCCceeCHHHHHHhcCCCCCcEEEEecCCHHHHhcChHHHHHHhCCCeEEEecccc
Q 007698 496 KLGCVEDSGNHKRLAPLLRFYTSKSEEELISLDEYVENMGEKQNAIYYLATDSLKSAKSAPFLEKLVQKDIEVRTSFVEL 575 (592)
Q Consensus 496 K~G~~eD~~~~~~l~~LLrf~ts~~~~~~~SL~eYv~rmk~~Qk~IYY~~~~s~~~~~~sp~lE~~~~kg~EVL~~~~~~ 575 (592)
|+|+++|++|+++|++||||+||+++++++||+||++|||++|+.|||++|++++++++|||+|.+++||+|||+|++||
T Consensus 159 K~G~~eD~~~~~~l~~lLrf~ss~~~~~~~sL~eYv~rmke~Q~~IyY~t~~~~~~~~~sp~~E~~~~kg~EVL~l~~~i 238 (263)
T 1y6z_A 159 KIGVVEDKENQEEIASLVEFYSINSGDKKTDLDSYIENMKEDQKCIYYISGENKKTAQNSPSLEKLKALNYDVLFSLEPI 238 (263)
T ss_dssp HHHHHHCGGGHHHHHTTCEECBTTTTTSCEEHHHHHHTCCTTCCSEEEEECSSHHHHHTCGGGHHHHHHTCCCEEECSHH
T ss_pred ccccccCHHHHHHHHHhheeeeccCCCceeeHHHHHHhccCCCceEEEEeCCCHHHHhcCcHHHHHHhCCCeEEEeCCcH
Confidence 99999999999999999999999877789999999999999999999999999999999999999999999999999999
Q ss_pred chhhee-c--ccccCCccC
Q 007698 576 YNFNFA-V--GRHHGNDFC 591 (592)
Q Consensus 576 d~~~~~-~--~~~~~~~~~ 591 (592)
||||++ | ++|+||+|.
T Consensus 239 De~~i~~L~~~e~~gk~~~ 257 (263)
T 1y6z_A 239 DEFCLSSLTVNKYKGYEVL 257 (263)
T ss_dssp HHHHHHHHHHHCBTTBCEE
T ss_pred HHHHHHHhhhhccCCceEE
Confidence 999999 8 699999983
No 9
>2gq0_A Chaperone protein HTPG; molecular chaperone, HSP90, E. coli, hydrolase; 1.90A {Escherichia coli}
Probab=100.00 E-value=8e-82 Score=647.09 Aligned_cols=248 Identities=41% Similarity=0.765 Sum_probs=239.1
Q ss_pred CCCccccCCCCCChHHHHHHHHHhhcCCCCCccccccccccceEEEEEEEeeCCCCCCccccccccccCeEEEeeceeec
Q 007698 339 TKPIWMRNPKEIEKDEYHEFYKKTFNEFLDPLAYTHFTTEGEVEFRSVLYIPGMGPLNNEEIMNPKTKNIRLYVKRVFIS 418 (592)
Q Consensus 339 ~~~iW~r~~~~i~~eey~~Fyk~~~~~~~dpL~~~h~~~eg~~~~~~llyiP~~~p~~~~~~~~~~~~~i~LYv~rvfI~ 418 (592)
.+|||+|+|++||+|||.+||++++++|++||+|+|+++||+++|+||||||+.+|+++++ +...++|+||||||||+
T Consensus 2 ~~plW~r~~~eit~EeY~eFYk~l~~d~~dPL~~iH~~vEg~~~~~~lLyiP~~ap~dl~~--~~~~~~ikLYvrrVfI~ 79 (303)
T 2gq0_A 2 AQALWTRNKSEITDEEYKEFYKHIAHDFNDPLTWSHNRVEGKQEYTSLLYIPSQAPWDMWN--RDHKHGLKLYVQRVFIM 79 (303)
T ss_dssp CCCGGGSCGGGSCHHHHHHHHHHHHTCCSCCSEEEEEEECSSSCEEEEEEECSSCCTTTTS--TTCCCSEEEEETTEEEE
T ss_pred CCCCcCCCcccCCHHHHHHHHHHHcCCccCcceeEEeccccccceeEEEEecCCCCchhhh--hhccCCeEEEEeceEee
Confidence 4799999999999999999999999999999999999999999999999999999998764 23568999999999999
Q ss_pred cCCCCCcccccccccceeccCCCCCCccchHHhhhcHHHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHhhhheee
Q 007698 419 DDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRKTFDMIQDISQSENKEDYKKFWENFGRFLKLG 498 (592)
Q Consensus 419 d~~~~~llP~~l~Fv~GVVDS~dLplNvSRE~lq~~~~l~~irk~l~~k~~~~l~~la~~e~~e~y~~f~~~f~~~lK~G 498 (592)
|+|+ +|||+||+||||||||+|||||||||+||+|++|++||+.|++||+++|.+||+ +|+++|++||++||++||+|
T Consensus 80 D~~e-eLlP~yL~FvkGVVDS~DLPLNvSRE~LQ~~~~lk~Irk~l~kKvl~~L~~la~-~d~e~Y~kF~~~fg~~lK~G 157 (303)
T 2gq0_A 80 DDAE-QFMPNYLRFVRGLIDSSDLPLNVSREILQDSTVTRNLRNALTKRVLQMLEKLAK-DDAEKYQTFWQQFGLVLKEG 157 (303)
T ss_dssp EEEG-GGSCGGGTTCEEEEEESSSCTTCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHTTH
T ss_pred cchh-hhchHHHHHhhcccccccCCcccchHhhcccHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHhhh
Confidence 9994 999999999999999999999999999999999999999999999999999996 57999999999999999999
Q ss_pred eccccccHHhhcccccceeccCC--CceeCHHHHHHhcCCCCCcEEEEecCCHHHHhcChHHHHHHhCCCeEEEeccccc
Q 007698 499 CVEDSGNHKRLAPLLRFYTSKSE--EELISLDEYVENMGEKQNAIYYLATDSLKSAKSAPFLEKLVQKDIEVRTSFVELY 576 (592)
Q Consensus 499 ~~eD~~~~~~l~~LLrf~ts~~~--~~~~SL~eYv~rmk~~Qk~IYY~~~~s~~~~~~sp~lE~~~~kg~EVL~~~~~~d 576 (592)
+++|+.|+++|++||||+||+++ ++++||+||++|||++|+.|||++|+|++++++|||+|.+++||+|||||++|||
T Consensus 158 i~eD~~nr~~l~~LLrF~Ss~~~~~~~~~SL~eYv~rmke~Qk~IYYitg~s~~~~~~sp~lE~~k~kG~EVL~l~d~iD 237 (303)
T 2gq0_A 158 PAEDFANQEAIAKLLRFASTHTDSSAQTVSLEDYVSRMKEGQEKIYYITADSYAAAKSSPHLELLRKKGIEVLLLSDRID 237 (303)
T ss_dssp HHHCGGGHHHHHTTCCBEETTTTCCCCCBCHHHHHHTCCTTCCSEEEEECSSHHHHHTCGGGHHHHHHTCCEEEECSTTH
T ss_pred hhcCHHHHHHHHHhheeeecCCCccCCeeeHHHHHHhcccCCceEEEEeCCCHHHHhcChHHHHHHHCCCeEEEeCchhH
Confidence 99999999999999999999876 5799999999999999999999999999999999999999999999999999999
Q ss_pred hhhee-cccccCCcc
Q 007698 577 NFNFA-VGRHHGNDF 590 (592)
Q Consensus 577 ~~~~~-~~~~~~~~~ 590 (592)
|||++ |++|+||+|
T Consensus 238 e~~i~~L~e~~gk~f 252 (303)
T 2gq0_A 238 EWMMNYLTEFDGKPF 252 (303)
T ss_dssp HHHTTTCCEETTEEE
T ss_pred HHHHHHHHhcCCcce
Confidence 99999 999999987
No 10
>3hjc_A Heat shock protein 83-1; sleeping sickness, structura genomics, stress response protein, chaperone, structural GE consortium, SGC; 2.50A {Leishmania major}
Probab=100.00 E-value=3.6e-81 Score=673.51 Aligned_cols=255 Identities=44% Similarity=0.813 Sum_probs=232.4
Q ss_pred ceeeeecCCCccccCCCCCChHHHHHHHHHhhcCCCCCccccccccccceEEEEEEEeeCCCCCCccccccccccCeEEE
Q 007698 332 DWELANETKPIWMRNPKEIEKDEYHEFYKKTFNEFLDPLAYTHFTTEGEVEFRSVLYIPGMGPLNNEEIMNPKTKNIRLY 411 (592)
Q Consensus 332 ~~e~~N~~~~iW~r~~~~i~~eey~~Fyk~~~~~~~dpL~~~h~~~eg~~~~~~llyiP~~~p~~~~~~~~~~~~~i~LY 411 (592)
+|+.+|+.+|||+|+|++||+|||.+|||+++++|++||+|+|+++||+++|+||||||+.+||++++. +..+++|+||
T Consensus 12 ~~e~iN~~~plW~r~~~eit~EeY~eFYk~l~~d~~dPL~~iH~~veg~~~~~~lLyiP~~ap~dl~~~-~~~~~~ikLY 90 (444)
T 3hjc_A 12 ENLYFQGHKPLWTRDPKDVTKEEYAAFYKAISNDWEDPAATKHFSVEGQLEFRSIMFVPKRAPFDMFEP-NKKRNNIKLY 90 (444)
T ss_dssp -------CCCGGGSCGGGCCHHHHHHHHHHTSSCCSCCSEEEEEEECSSSCEEEEEEECSSCCC----C-CCCCCSEEEE
T ss_pred CceeccCCCCCCCCCcccCCHHHHHHHHHHhcCCccCCceeEEEEecccceeeEEEecCCCCCcchhhh-hhhcCCeeEE
Confidence 589999999999999999999999999999999999999999999999999999999999999988641 2356899999
Q ss_pred eeceeeccCCCCCcccccccccceeccCCCCCCccchHHhhhcHHHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHH
Q 007698 412 VKRVFISDDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRKTFDMIQDISQSENKEDYKKFWENF 491 (592)
Q Consensus 412 v~rvfI~d~~~~~llP~~l~Fv~GVVDS~dLplNvSRE~lq~~~~l~~irk~l~~k~~~~l~~la~~e~~e~y~~f~~~f 491 (592)
||||||+|+|+ +|||+||+||||||||+|||||||||+||+|++|++||+.|++||+++|.++| +|+++|++||++|
T Consensus 91 v~rVfI~D~~~-ellP~yL~FvkGVVDS~DLPLNVSRE~LQ~~~~lk~I~k~i~kKvl~~L~~la--~d~e~Y~kFw~~f 167 (444)
T 3hjc_A 91 VRRVFIMDNCE-DLCPDWLGFVKGVVDSEDLPLNISRENLQQNKILKVIRKNIVKKCLEMFDEVA--ENKEDYKQFYEQF 167 (444)
T ss_dssp ETTEEEESCCG-GGSCGGGTTCEEEEEESSCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHT--TSHHHHHHHHHHH
T ss_pred EeeeEeecchh-hhchHHHhhheEEeccCCCCccccHHHhccCHHHHHHHHHHHHHHHHHHHHHH--hCHHHHHHHHHHH
Confidence 99999999994 99999999999999999999999999999999999999999999999999999 3899999999999
Q ss_pred hhhheeeeccccccHHhhcccccceeccCCCceeCHHHHHHhcCCCCCcEEEEecCCHHHHhcChHHHHHHhCCCeEEEe
Q 007698 492 GRFLKLGCVEDSGNHKRLAPLLRFYTSKSEEELISLDEYVENMGEKQNAIYYLATDSLKSAKSAPFLEKLVQKDIEVRTS 571 (592)
Q Consensus 492 ~~~lK~G~~eD~~~~~~l~~LLrf~ts~~~~~~~SL~eYv~rmk~~Qk~IYY~~~~s~~~~~~sp~lE~~~~kg~EVL~~ 571 (592)
|++||+|+++|+.|+++|++||||+||+++++++||+||++|||++|+.|||++|+|++++++|||+|.+++||+|||||
T Consensus 168 g~~lK~G~~eD~~~~~~l~~lLrF~ss~~~~~~~SL~eYv~rmke~Qk~IYYitg~s~~~~~~sp~lE~~k~kG~EVL~l 247 (444)
T 3hjc_A 168 GKNIKLGIHEDTANRKKLMELLRFYSTESGEEMTTLKDYVTRMKAGQKSIYYITGDSKKKLETSPFIEQARRRGLEVLFM 247 (444)
T ss_dssp HHHHHHHHTTCGGGHHHHHHHCCBCBTTTTTSCBCHHHHHHTCCTTCCEEEEEECSCHHHHHTCGGGHHHHHHTCCEEEE
T ss_pred hHHHhccccccHHHHHHHHHheEeeeecCCCCcCcHHHHHHhccccCceEEEEeCCCHHHHHhChHHHHHHhCCcEEEEe
Confidence 99999999999999999999999999988788999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhee-cccccCCcc
Q 007698 572 FVELYNFNFA-VGRHHGNDF 590 (592)
Q Consensus 572 ~~~~d~~~~~-~~~~~~~~~ 590 (592)
++||||||++ |++|+||+|
T Consensus 248 ~d~iDe~~i~~L~e~~gk~f 267 (444)
T 3hjc_A 248 TEPIDEYVMQQVKDFEDKKF 267 (444)
T ss_dssp CSHHHHHHHHHCCEETTEEE
T ss_pred CCchHHHHHHHHHHhCCceE
Confidence 9999999999 999999988
No 11
>3q6m_A Heat shock protein HSP 90-alpha; three domains, trimer of dimer, hexamer, chaperone; 3.00A {Homo sapiens} PDB: 3q6n_A
Probab=100.00 E-value=4.6e-79 Score=654.89 Aligned_cols=249 Identities=44% Similarity=0.834 Sum_probs=225.7
Q ss_pred CCCccccCCCCCChHHHHHHHHHhhcCCCCCccccccccccceEEEEEEEeeCCCCCCccccccccccCeEEEeeceeec
Q 007698 339 TKPIWMRNPKEIEKDEYHEFYKKTFNEFLDPLAYTHFTTEGEVEFRSVLYIPGMGPLNNEEIMNPKTKNIRLYVKRVFIS 418 (592)
Q Consensus 339 ~~~iW~r~~~~i~~eey~~Fyk~~~~~~~dpL~~~h~~~eg~~~~~~llyiP~~~p~~~~~~~~~~~~~i~LYv~rvfI~ 418 (592)
++|||+|+|++||+|||.+|||+++++|++||+|+||++||+++|+||||||+.+||++++. +..+++|+||||||||+
T Consensus 3 ~~plW~r~~~eit~EeY~eFYk~l~~d~~dPL~~iH~~veg~~e~~~lLyiP~~ap~d~~~~-~~~~~~ikLYvrrVfI~ 81 (448)
T 3q6m_A 3 TKPIWTRNPDDITNEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFVPRRAPFDLFEN-RKKKNNIKLYVRRVFIM 81 (448)
T ss_dssp -CCGGGSCTTSCCHHHHHHHHHHHHCCSSCCSEEEEEEECSSSCEEEEEEECSSCCC----------CCEEEEETTEEEE
T ss_pred CCCCCCCChhhCCHHHHHHHHHHhcCCccCChheeeeccCCCeeeEEEEEccCCCchhhhhh-hhhccceeEEeeeeEEe
Confidence 58999999999999999999999999999999999999999999999999999999998641 23568999999999999
Q ss_pred cCCCCCcccccccccceeccCCCCCCccchHHhhhcHHHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHhhhheee
Q 007698 419 DDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRKTFDMIQDISQSENKEDYKKFWENFGRFLKLG 498 (592)
Q Consensus 419 d~~~~~llP~~l~Fv~GVVDS~dLplNvSRE~lq~~~~l~~irk~l~~k~~~~l~~la~~e~~e~y~~f~~~f~~~lK~G 498 (592)
|+|+ +|||+||+||||||||+|||||||||+||+|++|++||+.|++||+++|.++| +|+++|++||++||++||+|
T Consensus 82 d~~~-ellP~yL~FvkGVVDS~DLPLNVSRE~LQ~~~~lk~Irk~i~kKvl~~L~~la--~d~e~Y~~f~~~fg~~lK~G 158 (448)
T 3q6m_A 82 DNCE-ELIPEYLNFIRGVVDSEDLPLNISREMLQQSKILKVIRKNLVKKCLELFTELA--EDKENYKKFYEQFSKNIKLG 158 (448)
T ss_dssp SCCT-TSSCGGGTTCEEEEEESCCC---------CCSHHHHHHHHHHHHHHHHHHHHT--SSHHHHHHHHHHHHHHHHHH
T ss_pred cchh-hhchhhhhheeEEeccCCCCccccHHhhccCHHHHHHHHHHHHHHHHHHHHHH--hCHHHHHHHHHHHhHHHHhh
Confidence 9995 99999999999999999999999999999999999999999999999999999 58999999999999999999
Q ss_pred eccccccHHhhcccccceeccCCCceeCHHHHHHhcCCCCCcEEEEecCCHHHHhcChHHHHHHhCCCeEEEeccccchh
Q 007698 499 CVEDSGNHKRLAPLLRFYTSKSEEELISLDEYVENMGEKQNAIYYLATDSLKSAKSAPFLEKLVQKDIEVRTSFVELYNF 578 (592)
Q Consensus 499 ~~eD~~~~~~l~~LLrf~ts~~~~~~~SL~eYv~rmk~~Qk~IYY~~~~s~~~~~~sp~lE~~~~kg~EVL~~~~~~d~~ 578 (592)
+++|..|+++|++||||+||+++++++||+||++|||++|+.|||++|+|++++++|||+|.+++||+|||||++|||||
T Consensus 159 i~eD~~n~~~l~~LLrF~Ss~~~~~~~SL~eYv~rmke~Qk~IYYitg~s~~~~~~sp~lE~~k~kG~EVL~l~d~iDe~ 238 (448)
T 3q6m_A 159 IHEDSQNRKKLSELLRYYTSASGDEMVSLKDYCTRMKENQKHIYYITGETKDQVANSAFVERLRKHGLEVIYMIEPIDEY 238 (448)
T ss_dssp HHHCGGGHHHHHTTCEEEETTTTTSCEEHHHHHHTCCSSCCEEEEEECSCHHHHHTSGGGHHHHHHTCCEEEECSTHHHH
T ss_pred hcccHHHHHHHHHhhEeeeccCCCceEeHHHHHHhccccCceEEEEecCCHHHHHhChHHHHHHHCCCEEEEecCchHHH
Confidence 99999999999999999999887889999999999999999999999999999999999999999999999999999999
Q ss_pred hee-cccccCCccC
Q 007698 579 NFA-VGRHHGNDFC 591 (592)
Q Consensus 579 ~~~-~~~~~~~~~~ 591 (592)
|++ |++|+||+|.
T Consensus 239 ~i~~L~ef~gk~~~ 252 (448)
T 3q6m_A 239 CVQQLKEFEGKTLV 252 (448)
T ss_dssp HTTTCCEETTEEEE
T ss_pred HHHHHHhhCCceEE
Confidence 999 9999999983
No 12
>2cge_A ATP-dependent molecular chaperone HSP82; chaperone complex, heat shock protein, CO-chaperone, ATP-binding, heat shock; 3.0A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.5e-79 Score=653.32 Aligned_cols=249 Identities=44% Similarity=0.823 Sum_probs=239.0
Q ss_pred CCCccccCCCCCChHHHHHHHHHhhcCCCCCccccccccccceEEEEEEEeeCCCCCCccccccccccCeEEEeeceeec
Q 007698 339 TKPIWMRNPKEIEKDEYHEFYKKTFNEFLDPLAYTHFTTEGEVEFRSVLYIPGMGPLNNEEIMNPKTKNIRLYVKRVFIS 418 (592)
Q Consensus 339 ~~~iW~r~~~~i~~eey~~Fyk~~~~~~~dpL~~~h~~~eg~~~~~~llyiP~~~p~~~~~~~~~~~~~i~LYv~rvfI~ 418 (592)
.+|||+|+|++||+|||.+|||+++++|++||+|+|+++||+++|+||||||+.+|+++++. +...++|+||||||||+
T Consensus 1 ~~plW~r~~~eit~EeY~eFYk~l~~d~~~PL~~iH~~veg~~~~~~lLyiP~~ap~d~~~~-~~~~~~ikLYvrrVfI~ 79 (405)
T 2cge_A 1 TKPLWTRNPSDITQEEYNAFYKSISNDWEDPLYVKHFSVEGQLEFRAILFIPKRAPFDLFES-KKKKNNIKLYVRRVFIT 79 (405)
T ss_dssp CCCGGGSCGGGSCTTHHHHHHHHHHCCSSCCSEEEEEEECSSSCEEEEEEECSSCSSCSSSS-CCCCCCCEEEETTEEEE
T ss_pred CCCCcCCCcccCCHHHHHHHHHHhcCCCcCCeeEEEeccCCCcceeEEEEecCCCchhhhhh-hhccCCeEEEEeeeEec
Confidence 47999999999999999999999999999999999999999999999999999999987642 23468999999999999
Q ss_pred cCCCCCcccccccccceeccCCCCCCccchHHhhhcHHHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHhhhheee
Q 007698 419 DDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRKTFDMIQDISQSENKEDYKKFWENFGRFLKLG 498 (592)
Q Consensus 419 d~~~~~llP~~l~Fv~GVVDS~dLplNvSRE~lq~~~~l~~irk~l~~k~~~~l~~la~~e~~e~y~~f~~~f~~~lK~G 498 (592)
|+|+ +|||+||+||||||||+|||||||||+||+|++|++||+.|++||+++|.++|+ ++++|++||++||++||+|
T Consensus 80 d~~~-~llP~yL~FvkGVVDS~DLPLNvSRE~LQ~~~~lk~I~~~l~kkvl~~L~~la~--~~e~y~kf~~~fg~~lK~G 156 (405)
T 2cge_A 80 DEAE-DLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKNIVKKLIEAFNEIAE--DSEQFEKFYSAFSKNIKLG 156 (405)
T ss_dssp SSCS-SSSCGGGTTCEEEEEESSCCSSCCTTCTHHHHHHHHHHHHHHHHHHHHHHHHTT--SHHHHHHHHHHHHHHHHHH
T ss_pred Cchh-hhChHHHHHHhhcccccccCcccChhhhcccHHHHHHHHHHHHHHHHHHHHHhh--CHHHHHHHHHHhhhhhcch
Confidence 9995 999999999999999999999999999999999999999999999999999994 6999999999999999999
Q ss_pred eccccccHHhhcccccceeccCCCceeCHHHHHHhcCCCCCcEEEEecCCHHHHhcChHHHHHHhCCCeEEEeccccchh
Q 007698 499 CVEDSGNHKRLAPLLRFYTSKSEEELISLDEYVENMGEKQNAIYYLATDSLKSAKSAPFLEKLVQKDIEVRTSFVELYNF 578 (592)
Q Consensus 499 ~~eD~~~~~~l~~LLrf~ts~~~~~~~SL~eYv~rmk~~Qk~IYY~~~~s~~~~~~sp~lE~~~~kg~EVL~~~~~~d~~ 578 (592)
+++|+.|+++|++||||+||+++++++||+||++|||++|+.|||++|+|++++++|||+|.+++||+|||||++|||||
T Consensus 157 ~~eD~~~~~~l~~lLrF~ss~~~~~~~sL~eYv~rmke~Q~~IyY~t~~s~~~~~~sp~~E~~k~kG~EVL~l~d~iDe~ 236 (405)
T 2cge_A 157 VHEDTQNRAALAKLLRYNSTKSVDELTSLTDYVTRMPEHQKNIYYITGESLKAVEKSPFLDALKAKNFEVLFLTDPIDEY 236 (405)
T ss_dssp HHHCTTTHHHHHTTCEECBSSCSSSCEEHHHHHHTCCTTCCSEEEEECSCHHHHHTCTTHHHHHHHTCCEEEECSHHHHH
T ss_pred hccCHHHHHHHHHhheeeecCCCCceeeHHHHHHhccCCCceEEEEeCCCHHHHhcChHHHHHHhCCCEEEEecCchHHH
Confidence 99999999999999999999877789999999999999999999999999999999999999999999999999999999
Q ss_pred hee-cccccCCccC
Q 007698 579 NFA-VGRHHGNDFC 591 (592)
Q Consensus 579 ~~~-~~~~~~~~~~ 591 (592)
+++ |++|+||+|.
T Consensus 237 ~i~~L~e~~gk~~~ 250 (405)
T 2cge_A 237 AFTQLKEFEGKTLV 250 (405)
T ss_dssp HHHHHCBSSSBEEE
T ss_pred HHHHHHHhCCceeE
Confidence 999 9999999983
No 13
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=100.00 E-value=9.8e-60 Score=480.81 Aligned_cols=253 Identities=50% Similarity=0.796 Sum_probs=220.6
Q ss_pred CCCceeeehhhHHHHHHHHHHccCCCchhhHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeC
Q 007698 78 TSGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDT 157 (592)
Q Consensus 78 ~~~e~~~Fq~e~~~Ll~lL~~~LYs~~~vfLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DN 157 (592)
...+++.||+|+++||++|+++||||+++|||||||||+||++|+|++++++|+++...+.+.|+|.+++++++|+|.||
T Consensus 21 ~~~e~~~Fqaei~~Ll~ll~~~lYsn~~ifLRELIsNA~DA~~k~r~~~l~d~~~~~~~~~l~I~I~~d~~~~tLtI~DN 100 (281)
T 3peh_A 21 ESMESHQYQTEVTRLMDIIVNSLYTQKEVFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISANKEKNILSITDT 100 (281)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEETTTTEEEEEEC
T ss_pred hccceeeehHHHHHHHHHHHHhccCChHHHHHHHHhChHHHHHHHHHHhcCCchhccCCCceEEEEEEcCCCcEEEEEeC
Confidence 45689999999999999999999999999999999999999999999999999988888889999999999999999999
Q ss_pred CCCCCHHHHHHHHhhhhcccchhHHHHhhhcccCCCCCcccccccchhhhhhccccEEEEEEecCCCCceEEEEEecCCC
Q 007698 158 GIGMTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSS 237 (592)
Q Consensus 158 GiGMt~eeL~~~L~tIa~Sgt~~f~~~l~~~~~~~~~~~~IGqFGIGf~S~F~VadkV~V~Sr~~~~~~~~~W~s~~~~~ 237 (592)
|+|||+++|.++|++||+||++.|+++++.. +.+..+||||||||||+||||++|+|.||+++ +.+|.|++.+ ++
T Consensus 101 GiGMt~edL~~~LgtIa~Sgtk~f~e~l~~~---~~d~~~IGqFGVGFySaf~vadkV~V~Sk~~~-~~~~~Wes~g-~g 175 (281)
T 3peh_A 101 GIGMTKVDLINNLGTIAKSGTSNFLEAISKS---GGDMSLIGQFGVGFYSAFLVADKVIVYTKNND-DEQYIWESTA-DA 175 (281)
T ss_dssp SCCCCHHHHHHHHHHHHHSCHHHHHHHHHHT---TCCSTTTTTTTCGGGGGGGTEEEEEEEEECTT-SCCEEEEEET-TS
T ss_pred CCCCCHHHHHHHHHHHHhHhhhhHHHhhhcc---ccccccccccCccchhhccccCEEEEEEecCC-CCEEEEEECC-Cc
Confidence 9999999999999999999999999998742 24678999999999999999999999999975 5799999986 48
Q ss_pred ceEEeecCCCCccCCCCcEEEEEeecCCccCCCchhHHHHHHHHhhccCccceeeccccccccccccccCC--C-CCCC-
Q 007698 238 SYVIREETDPEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEVEEEEKP--E-EGEE- 313 (592)
Q Consensus 238 ~y~I~~~~~~~~~~~~GT~I~L~Lk~~~~~e~le~~~i~~lvk~ys~fl~~PI~~~~~~~~~~~~~~~~~~--~-~~~~- 313 (592)
.|+|.+.+. ....++||+|+|+|++++. +|+++++|++||++||+|++|||+++.++++++++.+++++ + ++++
T Consensus 176 ~fti~~~~~-~~~~~~GT~I~L~Lked~~-e~le~~~ik~ivkkys~fi~~pI~l~~~k~~~~ev~~~~~~~~~~~~~~~ 253 (281)
T 3peh_A 176 KFTIYKDPR-GATLKRGTRISLHLKEDAT-NLLNDKKLMDLISKYSQFIQFPIYLLHENVYTEEVLADIAKDMVNDPNYD 253 (281)
T ss_dssp CEEEEECTT-CSTTSSEEEEEEEECGGGG-GGGSHHHHHHHHHHHTTTCCSCEEEEEEEEEEEEEEHHHHHHHTTCTTSS
T ss_pred cEEEEEcCC-CCCCCCCeEEEEEECCchh-hhcCHHHHHHHHHHhhccCCcceEEeeeeeeeeccCcchhhhcccccccc
Confidence 999998642 2236899999999999999 99999999999999999999999999999877766644311 1 1110
Q ss_pred ----Ccccccccccccccccccceeeee
Q 007698 314 ----QPEGEKKTKKTTKTEKYWDWELAN 337 (592)
Q Consensus 314 ----~~~~~~~~~~k~~~~~~~~~e~~N 337 (592)
.+++++++++|++++++|+|+.+|
T Consensus 254 ~~e~~~~~~~~~k~k~~~~~~~~~e~~n 281 (281)
T 3peh_A 254 SVKVEETDDPNKKTRTVEKKVKKWTLMN 281 (281)
T ss_dssp EEEECCCCCTTCCEEEEEEEEEEEEECC
T ss_pred ccccccccccccCCcceEEEEEEeEecC
Confidence 111234567888999999999998
No 14
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=100.00 E-value=1.5e-55 Score=442.24 Aligned_cols=209 Identities=51% Similarity=0.837 Sum_probs=185.8
Q ss_pred CCCceeeehhhHHHHHHHHHHccCCCchhhHHhhhhcHHhHHHHHhhhhccCCCCC------------------------
Q 007698 78 TSGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLL------------------------ 133 (592)
Q Consensus 78 ~~~e~~~Fq~e~~~Ll~lL~~~LYs~~~vfLRELIqNA~DA~~k~r~~~~~~~~~~------------------------ 133 (592)
++.|++.||+|+++||+||+|+||||+++|||||||||+|||+|+| +++++|+++
T Consensus 22 ~~~e~~~Fqae~~~ll~li~~slYs~keiFlRELISNasDA~dK~r-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (272)
T 3ied_A 22 SPVEKYNFKAEVNKVMDIIVNSLYTDKDVFLRELISNASDACDKKR-IILENNKLIKDAEVVTNEEIKNETEKEKTENVN 100 (272)
T ss_dssp EECEEEECCHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCC-------------------
T ss_pred cccceechHHHHHHHHHHHHhhcCCCHHHHHHHHHHhhHHHHHHHH-HhccChhhhhccccccccccccccccccccccc
Confidence 3468999999999999999999999999999999999999999999 888766533
Q ss_pred -------------CCCCCceEEEEeCCCCcEEEEEeCCCCCCHHHHHHHHhhhhcccchhHHHHhhhcccCCCCCccccc
Q 007698 134 -------------GDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQ 200 (592)
Q Consensus 134 -------------~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~L~tIa~Sgt~~f~~~l~~~~~~~~~~~~IGq 200 (592)
.+.+++.|+|.+|+++++|+|.|||+|||++||.++|++||+||+++|+++++.. ..+..+|||
T Consensus 101 ~~~~~~~~~~e~~~~~~~l~I~I~~Dk~~~tLtI~DNGiGMTkeeL~~~LgtIA~SGtk~Fle~l~~~---~~d~~~IGq 177 (272)
T 3ied_A 101 ESTDKKENVEEEKNDIKKLIIKIKPDKEKKTLTITDNGIGMDKSELINNLGTIAQSGTAKFLKQIEEG---KADSNLIGQ 177 (272)
T ss_dssp -------------CGGGGCCEEEEEETTTTEEEEEECSCCCCHHHHHHHTTCSCCHHHHHHHHHHHTT---SSCTTCGGG
T ss_pred cccccccccccccCCCCCcEEEEEEeCCCCEEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHHhhcc---cccccccCc
Confidence 2335689999999999999999999999999999999999999999999988742 256789999
Q ss_pred ccchhhhhhccccEEEEEEecCCCCceEEEEEecCCCceEEeecCC----CCccCCCCcEEEEEeecCCccCCCchhHHH
Q 007698 201 FGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSSYVIREETD----PEKLLKRGTQITLYLKEDDKYEFSEPTRIQ 276 (592)
Q Consensus 201 FGIGf~S~F~VadkV~V~Sr~~~~~~~~~W~s~~~~~~y~I~~~~~----~~~~~~~GT~I~L~Lk~~~~~e~le~~~i~ 276 (592)
|||||||+||||++|+|+|| . ++.+|.|++.+ ++.|+|.+... .....++||+|+||||+++. +|+++++|+
T Consensus 178 FGVGFySaFmVAdkV~V~Sk-~-dd~~~~WeS~g-~gsfti~~~~~~~~~~g~~~~~GT~I~L~Lked~~-e~le~~~ik 253 (272)
T 3ied_A 178 FGVGFYSSFLVSNRVEVYTK-K-EDQIYRWSSDL-KGSFSVNEIKKYDQEYDDIKGSGTKIILHLKEECD-EYLEDYKLK 253 (272)
T ss_dssp SCCGGGGGGGTEEEEEEEEE-S-SSCEEEEEECS-SSEEEEEECTTCTTCC--CCSSEEEEEEEECGGGG-GGGSHHHHH
T ss_pred ccceeheeeccCCEEEEEEc-C-CCceEEEEECC-CCCEEEEECcccccccCCCCCCCcEEEEEECCChH-HhcCHHHHH
Confidence 99999999999999999999 3 67899999985 58999988641 11236899999999999999 999999999
Q ss_pred HHHHHhhccCccceeecc
Q 007698 277 GLVKNYSQFVSFPIYTWQ 294 (592)
Q Consensus 277 ~lvk~ys~fl~~PI~~~~ 294 (592)
++|++||+|++|||++|.
T Consensus 254 ~likkys~fi~~PI~l~~ 271 (272)
T 3ied_A 254 ELIKKYSEFIKFPIEIWS 271 (272)
T ss_dssp HHHHHHCTTCCSCEEECC
T ss_pred HHHHHHHhCCCCCeEEEe
Confidence 999999999999999975
No 15
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=100.00 E-value=2.4e-55 Score=448.36 Aligned_cols=254 Identities=50% Similarity=0.846 Sum_probs=202.5
Q ss_pred CCceeeehhhHHHHHHHHHHccCCCchhhHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCC
Q 007698 79 SGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTG 158 (592)
Q Consensus 79 ~~e~~~Fq~e~~~Ll~lL~~~LYs~~~vfLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNG 158 (592)
..+++.||+++++||++|+++||+|+++|||||||||+||++|+|++++++|+.+.+.+.+.|+|.++.+..+|+|.|||
T Consensus 4 ~~e~~~Fqaei~~Ll~li~~~lYsn~eifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~~~l~I~DnG 83 (269)
T 1qy5_A 4 KSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTG 83 (269)
T ss_dssp CEEEECCCHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETTTTEEEEEECS
T ss_pred cccceeehhhHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhhhhccCchhccCCCceEEEEEEcCCceEEEEEECC
Confidence 45899999999999999999999999999999999999999999999999999888888899999998888999999999
Q ss_pred CCCCHHHHHHHHhhhhcccchhHHHHhhhccc-CCCCCcccccccchhhhhhccccEEEEEEecCCCCceEEEEEecCCC
Q 007698 159 IGMTKEELVDCLGTIAQSGTSKFLKALKENND-LGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSS 237 (592)
Q Consensus 159 iGMt~eeL~~~L~tIa~Sgt~~f~~~l~~~~~-~~~~~~~IGqFGIGf~S~F~VadkV~V~Sr~~~~~~~~~W~s~~~~~ 237 (592)
+|||+++|.++|++||+||++.|+++++.... ...+...||||||||||+||||++|+|.||+++ +.++.|++.+ +
T Consensus 84 iGMt~edl~~~l~tia~Sgtk~F~~kl~~~~~~~~~d~~~IG~fGvGfySaf~va~~v~V~Sk~~~-~~~~~w~s~g--g 160 (269)
T 1qy5_A 84 VGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNN-DTQHIWESDS--N 160 (269)
T ss_dssp CCCCHHHHHHHHHSCCSHHHHHHHHHHHHHHHHTCCCHHHHHHTTCGGGGGGGTEEEEEEEEECTT-SCCEEEEECS--S
T ss_pred CCCCHHHHHHHhhhhcccccHHHHHhhhhcccccccchhhcCCccccHHHHhhccceEEEEEEecC-CcEEEEEEeC--C
Confidence 99999999999999999999999988874200 014567999999999999999999999999985 5789999864 7
Q ss_pred ceEEeecCCCCccCCCCcEEEEEeecCCccCCCchhHHHHHHHHhhccCccceeeccccccccccccccCC--C-C----
Q 007698 238 SYVIREETDPEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEVEEEEKP--E-E---- 310 (592)
Q Consensus 238 ~y~I~~~~~~~~~~~~GT~I~L~Lk~~~~~e~le~~~i~~lvk~ys~fl~~PI~~~~~~~~~~~~~~~~~~--~-~---- 310 (592)
.|+|.+... ....++||+|+|+|++++. +|++.++|+++|++||+|++|||+++.+++.++++.+++++ + +
T Consensus 161 ~~~i~~~~~-~~~~~~GT~I~L~Lk~d~~-e~le~~~i~~lvkkys~fi~~PI~l~~~k~~~~~~~~~~~~~~~~~~~~~ 238 (269)
T 1qy5_A 161 EFSVIADPR-GNTLGRGTTITLVLKEEAS-DYLELDTIKNLVKKYSQFINFPIYVWSSKTETVEEPMEEEEAAKEEKEDS 238 (269)
T ss_dssp CEEEEECTT-CSCSSSEEEEEEEECGGGG-GGGSHHHHHHHHHTTCTTCSSCEEEEEECC--------------------
T ss_pred EEEEEeccC-CCcCCCCeEEEEEEcccch-hhhhHHHHHHHHHhhhcccceeeEEeeeeeeeeccCccchhhhhhccccc
Confidence 899987642 1235799999999999988 99999999999999999999999999988776665443311 1 0
Q ss_pred CCC----Ccccccccccccccccccceeeee
Q 007698 311 GEE----QPEGEKKTKKTTKTEKYWDWELAN 337 (592)
Q Consensus 311 ~~~----~~~~~~~~~~k~~~~~~~~~e~~N 337 (592)
++. ++++++++++|++++++++|+++|
T Consensus 239 ~~~~~~~~~~~~~~~k~k~~~~~~~~~e~~n 269 (269)
T 1qy5_A 239 DDEAAVEEEEEEKKPKTKKVEKTVWDWELMN 269 (269)
T ss_dssp ---------------------CCCEEEEECC
T ss_pred ccccccccccccccccCCceEEEEeeeEecC
Confidence 100 111123567888999999999998
No 16
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=100.00 E-value=1.5e-54 Score=434.39 Aligned_cols=213 Identities=53% Similarity=0.880 Sum_probs=194.5
Q ss_pred CCCceeeehhhHHHHHHHHHHccCCCchhhHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeC
Q 007698 78 TSGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDT 157 (592)
Q Consensus 78 ~~~e~~~Fq~e~~~Ll~lL~~~LYs~~~vfLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DN 157 (592)
.+.|++.||+|+++||++|+++||||+++|||||||||+||++|+|++++++|+.+...+.+.|+|.+|+++.+|+|.||
T Consensus 14 ~~~e~~~Fqae~~~ll~ll~~~lYs~~~ifLRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~L~I~Dn 93 (239)
T 3nmq_A 14 EEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIPNPQERTLTLVDT 93 (239)
T ss_dssp TCCEEEECCHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEETTTTEEEEEEC
T ss_pred ccceeEeehhhHHHHHHHHHHhccCCcHHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEeCCccEEEEEeC
Confidence 35799999999999999999999999999999999999999999999999999988778889999999998999999999
Q ss_pred CCCCCHHHHHHHHhhhhcccchhHHHHhhhcccCCCCCcccccccchhhhhhccccEEEEEEecCCCCceEEEEEecCCC
Q 007698 158 GIGMTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSS 237 (592)
Q Consensus 158 GiGMt~eeL~~~L~tIa~Sgt~~f~~~l~~~~~~~~~~~~IGqFGIGf~S~F~VadkV~V~Sr~~~~~~~~~W~s~~~~~ 237 (592)
|+|||++||.++|++||+||++.|+++++. +.+...||||||||||+||||++|+|.||++ ++.++.|++.+ ++
T Consensus 94 GiGMt~edL~~~LgtIA~Sgtk~f~e~~~~----~~d~~~IGqFGvGfySaf~vadkv~V~Sk~~-~~~~~~W~s~~-~g 167 (239)
T 3nmq_A 94 GIGMTKADLINNLGTIAKSGTKAFMEALQA----GADISMIGQFGVGFYSAYLVAEKVVVITKHN-DDEQYAWESSA-GG 167 (239)
T ss_dssp SCCCCHHHHHTHHHHHHHHHHHHHHHHHHT----TCCGGGGGGGTCGGGGGGGTEEEEEEEEECT-TSCCEEEEECS-TT
T ss_pred CCCCCHHHHHHHHHHHhcccchhhhhhhcc----cCCcccccccCcccccccccCCEEEEEEeeC-CCceeEEEECC-CC
Confidence 999999999999999999999999998873 2467899999999999999999999999996 46799999985 47
Q ss_pred ceEEeecCCCCccCCCCcEEEEEeecCCccCCCchhHHHHHHHHhhccCccceeeccccccc
Q 007698 238 SYVIREETDPEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRT 299 (592)
Q Consensus 238 ~y~I~~~~~~~~~~~~GT~I~L~Lk~~~~~e~le~~~i~~lvk~ys~fl~~PI~~~~~~~~~ 299 (592)
.|+|++... ...++||+|+||||+++. +|+++++|+++|++||+|++|||+++.+++++
T Consensus 168 ~fti~~~~~--~~~~~GT~I~L~lk~d~~-e~l~~~~i~~lv~kys~fi~~pI~~~~~~~~~ 226 (239)
T 3nmq_A 168 SFTVRADHG--EPIGRGTKVILHLKEDQT-EYLEERRVKEVVKKHSQFIGYPITLYLEKERE 226 (239)
T ss_dssp EEEEEECCS--SCCSSEEEEEEEECGGGG-GGGSHHHHHHHHHHHCTTCSSCEEECCCSCC-
T ss_pred cEEEEecCC--CcCCCCCEEEEEECCChH-HhcCHHHHHHHHHHHHhccCCceEEeeeeecc
Confidence 999988642 235799999999999999 99999999999999999999999998766443
No 17
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=100.00 E-value=7.6e-51 Score=411.30 Aligned_cols=218 Identities=52% Similarity=0.859 Sum_probs=191.4
Q ss_pred CCCceeeehhhHHHHHHHHHHccCCCchhhHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeC
Q 007698 78 TSGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDT 157 (592)
Q Consensus 78 ~~~e~~~Fq~e~~~Ll~lL~~~LYs~~~vfLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DN 157 (592)
+..|++.||+|+++||++|+++||+|+++|||||||||+||++|+|++++++|+.+...+.+.|+|.++.+..+|+|.||
T Consensus 35 ~~~e~~~Fqaei~~Ll~ll~~~lYs~~~iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~I~I~Dn 114 (256)
T 3o0i_A 35 EEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDT 114 (256)
T ss_dssp -CCEEEECCHHHHHHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEETTTTEEEEEEC
T ss_pred ccceeEEeEeeHHHHHHHHHHhccCCcHHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEcCCceEEEEecC
Confidence 35689999999999999999999999999999999999999999999999999888778889999999988899999999
Q ss_pred CCCCCHHHHHHHHhhhhcccchhHHHHhhhcccCCCCCcccccccchhhhhhccccEEEEEEecCCCCceEEEEEecCCC
Q 007698 158 GIGMTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSS 237 (592)
Q Consensus 158 GiGMt~eeL~~~L~tIa~Sgt~~f~~~l~~~~~~~~~~~~IGqFGIGf~S~F~VadkV~V~Sr~~~~~~~~~W~s~~~~~ 237 (592)
|+||+++||..+|++||+||++.|++.++. +.+...||+||+||||+|+||++|+|.||+.+ +.++.|++.+ ++
T Consensus 115 G~GMt~edl~~~l~~ia~S~~~~f~~~L~~----~~~~~~iG~fG~Gf~S~f~Vadkv~V~Sr~~~-~~g~~w~s~g-g~ 188 (256)
T 3o0i_A 115 GIGMTKADLINNLGTIAKSGTKAFMEALQA----GADISMIGQFGVGFYSAYLVAEKVTVITKHND-DEQYAWESSA-GG 188 (256)
T ss_dssp SCCCCHHHHHTHHHHHHHHHHHHHHHHHHT----TCCGGGGGGGTCGGGGGGGTEEEEEEEEECTT-SCEEEEEECS-TT
T ss_pred CCCcCHHHHHHHHHhhccccccchhhhhcc----cCCccccCCCcchHHHhhccCCeEEEEEcCCC-CceEEEEEec-cc
Confidence 999999999999999999999999887753 24568999999999999999999999999974 6799999985 47
Q ss_pred ceEEeecCCCCccCCCCcEEEEEeecCCccCCCchhHHHHHHHHhhccCccceeecccccccccccc
Q 007698 238 SYVIREETDPEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEVEE 304 (592)
Q Consensus 238 ~y~I~~~~~~~~~~~~GT~I~L~Lk~~~~~e~le~~~i~~lvk~ys~fl~~PI~~~~~~~~~~~~~~ 304 (592)
.|+|.+... ...++||+|+|+||.+.. +|++..+|+++|++||+||++||+++.++++++++++
T Consensus 189 ~~~v~~~~~--~~~~~GT~I~l~LK~~~~-e~~e~~~I~~iv~k~s~~l~~PI~~~~~~~~~~~~~~ 252 (256)
T 3o0i_A 189 SFTVRTDTG--EPMGRGTKVILHLKEDQT-EYLEERRIKEIVKKHSQFIGYPITLFVEKERDKEVSD 252 (256)
T ss_dssp EEEEEECCS--SCCSSEEEEEEEECGGGG-GGGCHHHHHHHHHHHCTTCSSCEEECCC---------
T ss_pred eEEEeeCCC--CCCCCCcEEEEEEcCcch-hhccHHHHHHHHHHHHhhCCCCeEEeeeeeecccCCC
Confidence 899988631 236899999999999999 9999999999999999999999999988876665553
No 18
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=100.00 E-value=1.2e-49 Score=397.72 Aligned_cols=217 Identities=52% Similarity=0.859 Sum_probs=189.8
Q ss_pred CCCceeeehhhHHHHHHHHHHccCCCchhhHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeC
Q 007698 78 TSGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDT 157 (592)
Q Consensus 78 ~~~e~~~Fq~e~~~Ll~lL~~~LYs~~~vfLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DN 157 (592)
...|+++||+|+++||++|+++||+|+++|||||||||+||++++|+.++++|+.....+.+.|+|.++.+..+|+|.||
T Consensus 7 ~~~~~~~Fq~ei~~ll~ll~~~lYs~~~~~lrELi~NA~DA~~k~r~~~~~~~~~~~~~~~i~I~I~~d~~~~~i~V~Dn 86 (228)
T 3t0h_A 7 EEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDT 86 (228)
T ss_dssp -CCEEEECCHHHHHHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEETTTTEEEEEEC
T ss_pred ccccceEEEeeHHHHHHHHHHhhcCCcHHHHHHHHHCHHHHHHHHHhhhccCcccccCCCceEEEEEEeCCeeEEEEEeC
Confidence 45689999999999999999999999999999999999999999999999998877777788999999888899999999
Q ss_pred CCCCCHHHHHHHHhhhhcccchhHHHHhhhcccCCCCCcccccccchhhhhhccccEEEEEEecCCCCceEEEEEecCCC
Q 007698 158 GIGMTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSS 237 (592)
Q Consensus 158 GiGMt~eeL~~~L~tIa~Sgt~~f~~~l~~~~~~~~~~~~IGqFGIGf~S~F~VadkV~V~Sr~~~~~~~~~W~s~~~~~ 237 (592)
|+||+++||..+|++||+|+++.|.+.++. +.+...+|+||+||+|+|+||++|+|.||+.+ +.++.|++.+ ++
T Consensus 87 G~GMs~edl~~~l~~ia~S~~~~f~~~l~~----~~~~~~iG~fG~G~~S~~~vad~v~V~Sr~~~-~~~~~w~~~g-~~ 160 (228)
T 3t0h_A 87 GIGMTKADLINNLGTIAKSGTKAFMEALQA----GADISMIGQFGVGFYSAYLVAEKVTVITKHND-DEQYAWESSA-GG 160 (228)
T ss_dssp SCCCCHHHHHTGGGSCHHHHHHHHHHHHHT----TCCGGGGGGGTCGGGGGGGTEEEEEEEEECTT-SCEEEEEECS-TT
T ss_pred CCCCCHHHHHHHHHhhccccchhhhhhhcc----cCCcccCCCCChhHHHHhccCCEEEEEEecCC-CCcEEEEEcC-Cc
Confidence 999999999999999999999999877752 24567999999999999999999999999974 6799999985 47
Q ss_pred ceEEeecCCCCccCCCCcEEEEEeecCCccCCCchhHHHHHHHHhhccCccceeeccccccccccc
Q 007698 238 SYVIREETDPEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEVE 303 (592)
Q Consensus 238 ~y~I~~~~~~~~~~~~GT~I~L~Lk~~~~~e~le~~~i~~lvk~ys~fl~~PI~~~~~~~~~~~~~ 303 (592)
.|++.+.+. ...++||+|+|+||++.. +|++..+|+++|++||+||++||+++.+++++++++
T Consensus 161 ~~~v~~~~~--~~~~~GT~I~v~Lk~~~~-E~~e~~~i~~iv~~~a~~l~~Pi~~~~~~~~~~~~~ 223 (228)
T 3t0h_A 161 SFTVRTDTG--EPMGRGTKVILHLKEDQT-EYLEERRIKEIVKKHSQFIGYPITLFVEKERDKEVS 223 (228)
T ss_dssp EEEEEECCS--SCCSSEEEEEEEECGGGG-GGGSHHHHHHHHHHHSTTCSSCEEECCC--------
T ss_pred eEEEeecCC--CCCCCCcEEEEEECCchh-hhhhHHHHHHHHHHHHhhCCCCeEEeecceeeccCC
Confidence 899988631 125799999999999999 999999999999999999999999998876665544
No 19
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=100.00 E-value=1.4e-48 Score=392.03 Aligned_cols=212 Identities=52% Similarity=0.880 Sum_probs=175.2
Q ss_pred CceeeehhhHHHHHHHHHHccCCCchhhHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCC
Q 007698 80 GEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGI 159 (592)
Q Consensus 80 ~e~~~Fq~e~~~Ll~lL~~~LYs~~~vfLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGi 159 (592)
.|+++||+++++|+++|+++||++|++|||||||||+||++|+|++.+++|+++.+.+.+.|+|.++.+..+|+|.|||+
T Consensus 9 ~~~~~F~~ei~~L~~ll~~~lys~~~~~lrELI~NA~DA~ak~~~~~~~~~~~~~~~~~~~I~i~~d~~~~~i~I~DnG~ 88 (236)
T 2gqp_A 9 SEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGV 88 (236)
T ss_dssp TTEECCCHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETTTTEEEEEECSC
T ss_pred ccccchhHhHHHHHHHHHHhhcCCchHHHHHHHHhHHHhhhhhhhhcccCcccccCCCceEEEEEEcCCCCEEEEEECCc
Confidence 58999999999999999999999999999999999999999999999999988877788899999988888999999999
Q ss_pred CCCHHHHHHHHhhhhcccchhHHHHhhhcccC-CCCCcccccccchhhhhhccccEEEEEEecCCCCceEEEEEecCCCc
Q 007698 160 GMTKEELVDCLGTIAQSGTSKFLKALKENNDL-GADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSS 238 (592)
Q Consensus 160 GMt~eeL~~~L~tIa~Sgt~~f~~~l~~~~~~-~~~~~~IGqFGIGf~S~F~VadkV~V~Sr~~~~~~~~~W~s~~~~~~ 238 (592)
||+++||.++|++||+||++.|+++++..... ..+...||+|||||||+||||++|+|.||+.+ +.++.|++.+ +.
T Consensus 89 GMt~edl~~~l~~ia~Sg~~~f~~kl~~~~~~~~~d~~~iG~fGiG~~S~f~va~~v~V~Sr~~~-~~~~~w~~~g--g~ 165 (236)
T 2gqp_A 89 GMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNN-DTQHIWESDS--NE 165 (236)
T ss_dssp CCCHHHHHHHHHCC---------------------CHHHHHHTTCGGGGGGGTEEEEEEEEECTT-SCCEEEEESS--SC
T ss_pred CCCHHHHHHHHhhhcccccHhHHHHhhccccccccchhhcCCCCcchhhHhhcCCEEEEEEeCCC-CceEEEEEeC--CE
Confidence 99999999999999999999998887642000 14567999999999999999999999999986 4689999864 68
Q ss_pred eEEeecCCCCccCCCCcEEEEEeecCCccCCCchhHHHHHHHHhhccCccceeecccc
Q 007698 239 YVIREETDPEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEK 296 (592)
Q Consensus 239 y~I~~~~~~~~~~~~GT~I~L~Lk~~~~~e~le~~~i~~lvk~ys~fl~~PI~~~~~~ 296 (592)
|++.+... ....++||+|+|+|+++.. +|++.++|+++|++||+|+++||+++.++
T Consensus 166 ~~i~~~~~-~~~~~~GT~I~l~Lk~~~~-~~le~~~i~~lv~~~s~~i~~pI~~~~~~ 221 (236)
T 2gqp_A 166 FSVIADPR-GNTLGRGTTITLVLKEEAS-DYLELDTIKNLVKKYSQFINFPIYVWSSK 221 (236)
T ss_dssp EEEEECTT-CSCSSSEEEEEEEECGGGG-GGGCHHHHHHHHHHHHTTCSSCEEEEEEC
T ss_pred EEEEeccC-CCCCCCCeEEEEEECCcch-hhChHHHHHHHHHHHhhhCCCceEEeeee
Confidence 99887642 1125799999999999988 99999999999999999999999997643
No 20
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=100.00 E-value=1.3e-45 Score=375.92 Aligned_cols=214 Identities=52% Similarity=0.865 Sum_probs=188.7
Q ss_pred CCceeeehhhHHHHHHHHHHccCCCchhhHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCC
Q 007698 79 SGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTG 158 (592)
Q Consensus 79 ~~e~~~Fq~e~~~Ll~lL~~~LYs~~~vfLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNG 158 (592)
..+++.||+++++|+++|+++||++|++|||||||||+||++++|++.++++++..+...+.|+|..+.+..+|+|.|||
T Consensus 44 ~~e~~~F~~ei~~Ll~ll~~~lys~~~~~lrELI~NA~DA~ak~r~~~l~~~~~~~~~~~i~I~i~~d~~~~~I~I~DnG 123 (264)
T 1yc1_A 44 EVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYETLTDPSKLDSGKELHINLIPNKQDRTLTIVDTG 123 (264)
T ss_dssp CEEEEECCHHHHHHHHHHHHCCCSCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGGGCCCCCEEEEEETTTTEEEEEECS
T ss_pred cceeEEehHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccCccccCCCCeEEEEEEECCCeeEEEEEECC
Confidence 45899999999999999999999999999999999999999999999999988776677888999888778899999999
Q ss_pred CCCCHHHHHHHHhhhhcccchhHHHHhhhcccCCCCCcccccccchhhhhhccccEEEEEEecCCCCceEEEEEecCCCc
Q 007698 159 IGMTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSS 238 (592)
Q Consensus 159 iGMt~eeL~~~L~tIa~Sgt~~f~~~l~~~~~~~~~~~~IGqFGIGf~S~F~VadkV~V~Sr~~~~~~~~~W~s~~~~~~ 238 (592)
+||+++||.++|++||+||++.|+++++. ..+...||+|||||||+|++|++|+|.|++.+ +.++.|++.+ ++.
T Consensus 124 ~GMs~edL~~~l~~ia~S~~~~f~~~l~~----~~d~~~iG~fGiGf~S~f~va~~v~V~Sr~~~-~~~~~w~~~~-~~~ 197 (264)
T 1yc1_A 124 IGMTKADLINNLGTIAKSGTKAFMEALQA----GADISMIGQFGVGFYSAYLVAEKVTVITKHND-DEQYAWESSA-GGS 197 (264)
T ss_dssp CCCCHHHHHHHHHSCTTSCHHHHHHHHHT----TCCGGGGGGGTCGGGGHHHHEEEEEEEEECTT-SCCEEEEECS-TTE
T ss_pred cCCCHHHHHHHHHhhccccchhhhhhhcc----ccchhhcCCCCCCccccccCCCEEEEEEecCC-CceEEEEEcC-Cce
Confidence 99999999999999999999999888763 24567999999999999999999999999975 5689999975 478
Q ss_pred eEEeecCCCCccCCCCcEEEEEeecCCccCCCchhHHHHHHHHhhccCccceeeccccccccc
Q 007698 239 YVIREETDPEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIE 301 (592)
Q Consensus 239 y~I~~~~~~~~~~~~GT~I~L~Lk~~~~~e~le~~~i~~lvk~ys~fl~~PI~~~~~~~~~~~ 301 (592)
|++.+... ...++||+|+|+|+++.. +|++..+|+++|++||+|+++||+++.+++.+++
T Consensus 198 ~~i~~~~~--~~~~~GT~I~l~Lk~~~~-e~~e~~~i~~lv~k~s~fi~~PI~~~~~~~~~~~ 257 (264)
T 1yc1_A 198 FTVRTDTG--EPMGRGTKVILHLKEDQT-EYLEERRIKEIVKKHSQFIGYPITLFVEKERDKE 257 (264)
T ss_dssp EEEEECCS--SCCSSEEEEEEEECGGGG-GGGSHHHHHHHHHHHTTTCSSCEEECCCC-----
T ss_pred EEEeecCC--CCCCCCeEEEEEECCchh-hhhhHHHHHHHHHHHHhhCCCCEEEeeccccccc
Confidence 99887531 125799999999999988 9999999999999999999999999887654433
No 21
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=100.00 E-value=1.8e-45 Score=365.41 Aligned_cols=211 Identities=51% Similarity=0.846 Sum_probs=188.7
Q ss_pred CceeeehhhHHHHHHHHHHccCCCchhhHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCC
Q 007698 80 GEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGI 159 (592)
Q Consensus 80 ~e~~~Fq~e~~~Ll~lL~~~LYs~~~vfLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGi 159 (592)
.|++.||+++++|+++|+++||+|+++|||||||||+||++++|+.++++|+.....+.+.|+|..+.+..+|+|.|||+
T Consensus 3 ~~~~~f~~~~~~l~~ll~~~lys~~~~~lrELI~NA~DA~a~~~~~~~~~~~~~~~~~~i~I~i~~~~~~~~i~I~DnG~ 82 (220)
T 2wer_A 3 SETFEFQAEITQLMSLIINTVYSNKEIFLREIVSNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQKVLEIRDSGI 82 (220)
T ss_dssp CEEEECCHHHHHHHHHHHHHCCSSTTHHHHHHHHHHHHHHHHHHHHHTTCGGGGGGCCCCCEEEEEEGGGTEEEEEECSC
T ss_pred CcceeeeecHHHHHHHHHHhccCCchHHHHHHHHhHHHHHHHHHhhcccCchhccCCCcEEEEEEECCCCCEEEEEEcCC
Confidence 48999999999999999999999999999999999999999999999999887766778889998887778999999999
Q ss_pred CCCHHHHHHHHhhhhcccchhHHHHhhhcccCCCCCcccccccchhhhhhccccEEEEEEecCCCCceEEEEEecCCCce
Q 007698 160 GMTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSSY 239 (592)
Q Consensus 160 GMt~eeL~~~L~tIa~Sgt~~f~~~l~~~~~~~~~~~~IGqFGIGf~S~F~VadkV~V~Sr~~~~~~~~~W~s~~~~~~y 239 (592)
||+++||.++|++||+||++.|+++++. ..+...||+||+||||+|++|++|+|.|++.+ +.++.|++.+ ++.|
T Consensus 83 GMs~edl~~~l~~ia~S~~~~f~~k~~~----~~~~~~iG~fGiG~~s~~~~~~~v~v~S~~~~-~~~~~~~~~~-~~~~ 156 (220)
T 2wer_A 83 GMTKAELINNLGTIAKSGTKAFMEALSA----GADVSMIGQFGVGFYSLFLVADRVQVISKSND-DEQYIWESNA-GGSF 156 (220)
T ss_dssp CCCHHHHHHHTTTSCCTTHHHHHHHHTT----TCCGGGGGGGTCGGGGGGGTEEEEEEEEECTT-SCCEEEEECS-SSEE
T ss_pred CCCHHHHHHHHHhHhcccchhHHHHhhc----cCCcccCCccchhHHHhhhcCCeeEEEEecCC-CceeEEEeCC-CCce
Confidence 9999999999999999999999888863 24667999999999999999999999999975 5689999975 4789
Q ss_pred EEeecCCCCccCCCCcEEEEEeecCCccCCCchhHHHHHHHHhhccCccceeecccccc
Q 007698 240 VIREETDPEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSR 298 (592)
Q Consensus 240 ~I~~~~~~~~~~~~GT~I~L~Lk~~~~~e~le~~~i~~lvk~ys~fl~~PI~~~~~~~~ 298 (592)
++.+... ....++||+|+|+|++++. +|++..+|+++|++||+|+++||+++.+++.
T Consensus 157 ~i~~~~~-~~~~~~GT~I~l~Lk~~~~-~~~e~~~i~~~v~~~a~~l~~PI~~~~~~~~ 213 (220)
T 2wer_A 157 TVTLDEV-NERIGRGTILRLFLKDDQL-EYLEEKRIKEVIKRHSEFVAYPIQLVVTKEV 213 (220)
T ss_dssp EEEECSS-SCCCSSEEEEEEEECTTCG-GGGCHHHHHHHHHHHCTTCCSCEEECCCCCC
T ss_pred EeecccC-CCCCCCCeEEEEEECcchH-HhCCHHHHHHHHHHHHhcCCCceEEEecccc
Confidence 8887531 1125799999999999988 9999999999999999999999999876543
No 22
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=100.00 E-value=6e-42 Score=343.67 Aligned_cols=208 Identities=45% Similarity=0.794 Sum_probs=184.0
Q ss_pred CCceeeehhhHHHHHHHHHHccCCCchhhHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCC
Q 007698 79 SGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTG 158 (592)
Q Consensus 79 ~~e~~~Fq~e~~~Ll~lL~~~LYs~~~vfLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNG 158 (592)
..|++.||+++++|+++|+++||++|.+|||||||||+||++++|+..++++++..++..+.|+|.++.++..|+|.|||
T Consensus 23 ~~e~~~f~~~i~~L~~~l~~~lys~~~~~lrELI~NA~DA~~~~r~~~~~~~~~~~~~~~~~I~i~~~~~~~~i~I~DnG 102 (235)
T 2ior_A 23 GQETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNG 102 (235)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTGGGTTHHHHHHHHHHHHHHHHHHHHHTSCGGGGTTCCCCCEEEEEETTTTEEEEEECS
T ss_pred ccccEEeehhHHHHHHHHHHhhcCCHHHHHHHHHhCHHHHHHHHHhhhccCccccCCCceEEEEEEEcCCceEEEEEECC
Confidence 45899999999999999999999999999999999999999999999999888777777788999888888899999999
Q ss_pred CCCCHHHHHHHHhhhhcccchhHHHHhhhcccCCCCCcccccccchhhhhhccccEEEEEEecCCC--CceEEEEEecCC
Q 007698 159 IGMTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRS--DKQYVWEAEADS 236 (592)
Q Consensus 159 iGMt~eeL~~~L~tIa~Sgt~~f~~~l~~~~~~~~~~~~IGqFGIGf~S~F~VadkV~V~Sr~~~~--~~~~~W~s~~~~ 236 (592)
+||+++||..+|++||+|+++.|.++++.. ...+...+|+||+||+|+|++|++|+|.|++.++ ..++.|+..+ +
T Consensus 103 ~GMs~edl~~~~~~ia~S~~~~f~~~l~~~--~~~~~~~iG~fGiG~~S~~~~~~~v~V~Sr~~~~~~~~~~~w~~~~-~ 179 (235)
T 2ior_A 103 VGMTRDEVIDHLGTIAKSGTKSFLESLGSD--QAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAG-E 179 (235)
T ss_dssp SCCCHHHHHHHHTTCCCTTHHHHHHHCCSC--HHHHHHHHTTCCCCGGGGGGTEEEEEEEEECTTSCGGGEEEEEECS-S
T ss_pred CCCCHHHHHHHHHHHccccccchhhhhccc--cccccccCCCCChhHHHHHhCcCeEEEEEecCCCCCceeEEEEecC-C
Confidence 999999999999999999999987765410 0123468999999999999999999999999876 6799999975 4
Q ss_pred CceEEeecCCCCccCCCCcEEEEEeecCCccCCCchhHHHHHHHHhhccCccceeecc
Q 007698 237 SSYVIREETDPEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQ 294 (592)
Q Consensus 237 ~~y~I~~~~~~~~~~~~GT~I~L~Lk~~~~~e~le~~~i~~lvk~ys~fl~~PI~~~~ 294 (592)
+.|++.+... .++||+|+|+|+++.. +|++..+|+++|++||+|+++||+++.
T Consensus 180 ~~~~i~~~~~----~~~GT~V~v~Lk~~~~-~~~e~~~i~~lv~~ya~~l~~PI~~~~ 232 (235)
T 2ior_A 180 GEYTVADITK----EDRGTEITLHLREGED-EFLDDWRVRSIISKYSDHIALPVEIEK 232 (235)
T ss_dssp SEEEEEEECC----CSCEEEEEEEECTTCG-GGGCHHHHHHHHHHHTTSCCSCEEEC-
T ss_pred CcEEEeeCCC----CCCCEEEEEEEcCchh-hhCCHHHHHHHHHHHhccCCCCeEecc
Confidence 7888887432 4799999999999888 999999999999999999999999863
No 23
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=99.88 E-value=4.3e-22 Score=208.98 Aligned_cols=280 Identities=17% Similarity=0.225 Sum_probs=175.3
Q ss_pred HccCCCchhhHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCC-CcEEEEEeCCCCCCHHHHHHHHhhhhcc
Q 007698 98 HSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE-NGTITITDTGIGMTKEELVDCLGTIAQS 176 (592)
Q Consensus 98 ~~LYs~~~vfLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~-~~~L~I~DNGiGMt~eeL~~~L~tIa~S 176 (592)
-....++..+|+|||+||+||. +..|.|.++.+ ...|+|.|||+||+++++...+.++++|
T Consensus 19 gevi~~~~~~v~ELi~NaidA~------------------a~~I~I~i~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~ts 80 (333)
T 1b63_A 19 GEVVERPASVVKELVENSLDAG------------------ATRIDIDIERGGAKLIRIRDNGCGIKKDELALALARHATS 80 (333)
T ss_dssp HHHCSSHHHHHHHHHHHHHHTT------------------CSEEEEEEEGGGTSEEEEEECSCCCCGGGHHHHHSTTCCS
T ss_pred CCchhCHHHHHHHHHHHHHHCC------------------CCeEEEEEEeCCceEEEEEEcCCCcCHHHHHHhhhccccc
Confidence 4456789999999999999994 22455555444 3689999999999999999999999887
Q ss_pred cchhHHHHhhhcccCCCCCcccccccchhhhhhccccEEEEEEecCCCCceEEEEEecCCCceEEeecCCCCccCCCCcE
Q 007698 177 GTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSSYVIREETDPEKLLKRGTQ 256 (592)
Q Consensus 177 gt~~f~~~l~~~~~~~~~~~~IGqFGIGf~S~F~VadkV~V~Sr~~~~~~~~~W~s~~~~~~y~I~~~~~~~~~~~~GT~ 256 (592)
....+ +.+ .....+|++|+|++|+++++ +++|+|++.++..+|.|...++.....+.+.. .++||+
T Consensus 81 K~~~~-~d~-------~~~~~~G~~G~gl~si~~vs-~l~v~s~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~GT~ 146 (333)
T 1b63_A 81 KIASL-DDL-------EAIISLGFRGEALASISSVS-RLTLTSRTAEQQEAWQAYAEGRDMNVTVKPAA-----HPVGTT 146 (333)
T ss_dssp SCCSH-HHH-------HTCCSSCCSSCHHHHHHTTS-EEEEEEECTTCSSEEEEEEETTTTEEEEEEEC-----CCSEEE
T ss_pred Ccccc-chh-------hhccccCccccchhhhhcCC-cEEEEEecCCCceEEEEEEcCCcceEeeeccc-----CCCCCE
Confidence 32111 011 12346899999999999998 89999999776668888665421134444432 469999
Q ss_pred EEEE------------eecCCccCCCchhHHHHHHHHhhccCccc-eeeccccccccccccccCCCCCCCCccccccccc
Q 007698 257 ITLY------------LKEDDKYEFSEPTRIQGLVKNYSQFVSFP-IYTWQEKSRTIEVEEEEKPEEGEEQPEGEKKTKK 323 (592)
Q Consensus 257 I~L~------------Lk~~~~~e~le~~~i~~lvk~ys~fl~~P-I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (592)
|+++ ++.... + ..+|.+++++|+ +.+| |.+
T Consensus 147 V~v~~Lf~n~P~r~kflk~~~~-e---~~~i~~~~~~~a--l~~p~v~~------------------------------- 189 (333)
T 1b63_A 147 LEVLDLFYNTPARRKFLRTEKT-E---FNHIDEIIRRIA--LARFDVTI------------------------------- 189 (333)
T ss_dssp EEEESTTTTCHHHHHTCCCHHH-H---HHHHHHHHHHHH--HHCTTCEE-------------------------------
T ss_pred EEEecccccchhhhhhhccHHH-H---HHHHHHHHHHHh--ccCCCcEE-------------------------------
Confidence 9998 222212 2 278999999999 4455 332
Q ss_pred ccccccccceeeeecCCCccccCCCCCChHHHHHHHHHhhc-CCCCCccccccccccceEEEEEEEeeCCCCCCcccccc
Q 007698 324 TTKTEKYWDWELANETKPIWMRNPKEIEKDEYHEFYKKTFN-EFLDPLAYTHFTTEGEVEFRSVLYIPGMGPLNNEEIMN 402 (592)
Q Consensus 324 k~~~~~~~~~e~~N~~~~iW~r~~~~i~~eey~~Fyk~~~~-~~~dpL~~~h~~~eg~~~~~~llyiP~~~p~~~~~~~~ 402 (592)
.+.++++++|..++.. ....+.++...+++ ++...+..++...++ +.+.|++..|... +
T Consensus 190 ----------~l~~ng~~~~~~~~~~-~~~~~~~~i~~i~G~~~~~~li~i~~~~~~-~~v~G~i~~p~~~--------~ 249 (333)
T 1b63_A 190 ----------NLSHNGKIVRQYRAVP-EGGQKERRLGAICGTAFLEQALAIEWQHGD-LTLRGWVADPNHT--------T 249 (333)
T ss_dssp ----------EEEETTEEEEEECCCC-TTCCTHHHHHHHHCHHHHHHEEEEEEEETT-EEEEEEEECGGGC--------C
T ss_pred ----------EEEECCEEEEecCCCC-CCchHHHHHHHHhChhhHhheEEEEecCCC-EEEEEEEEcCccc--------c
Confidence 2223344444433310 11123345556554 222234445544444 8999988878743 2
Q ss_pred cc-ccCeEEEeeceeeccCC-C-------CCccccc---ccccceeccCCCCCCccc---hHHh--hhcHHHHHHHHHHH
Q 007698 403 PK-TKNIRLYVKRVFISDDF-D-------GELFPRY---LSFVKGVVDSDDLPLNVS---REIL--QESRIVRIMRKRLV 465 (592)
Q Consensus 403 ~~-~~~i~LYv~rvfI~d~~-~-------~~llP~~---l~Fv~GVVDS~dLplNvS---RE~l--q~~~~l~~irk~l~ 465 (592)
.. ...+.+|||+++|.+.. . ..++|.- ..++..-+|.+.+-.||. ||.. ++..++..|++.|.
T Consensus 250 ~~~~~~~~~fvNgR~V~~~~l~~ai~~~y~~~l~~~~~P~~~l~l~~~p~~vDvNvhP~K~ev~f~~~~~v~~~i~~~i~ 329 (333)
T 1b63_A 250 PALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVDVNVHPAKHEVRFHQSRLVHDFIYQGVL 329 (333)
T ss_dssp TTGGGCEEEEETTEECCCHHHHHHHHHHHHHHSSSCCCCCEEEEEECCGGGEECTTSTTCCCCEETTHHHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCEEecCHHHHHHHHHHHHhhccCCCCcEEEEEEEeCchhccceECCCcCEEEeCCHHHHHHHHHHHHH
Confidence 23 46799999999998741 0 0122311 234555667777777773 3332 33344455555444
Q ss_pred H
Q 007698 466 R 466 (592)
Q Consensus 466 ~ 466 (592)
+
T Consensus 330 ~ 330 (333)
T 1b63_A 330 S 330 (333)
T ss_dssp H
T ss_pred H
Confidence 3
No 24
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=99.82 E-value=4e-20 Score=196.34 Aligned_cols=170 Identities=20% Similarity=0.206 Sum_probs=104.2
Q ss_pred HHHHHHHHHHccCCC-----chhhHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCC-CCcEEEEEeCCCCCC
Q 007698 89 VSRLMDLIVHSLYSH-----KEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDP-ENGTITITDTGIGMT 162 (592)
Q Consensus 89 ~~~Ll~lL~~~LYs~-----~~vfLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~-~~~~L~I~DNGiGMt 162 (592)
++.|.+.+++.|+++ +..+|+|||+||+||. ...|.|.+.. +...|+|.|||+||+
T Consensus 15 I~~L~~~~~~~i~agevi~~~~~vl~eLv~NAiDA~------------------a~~I~I~i~~~~~~~I~V~DnG~Gi~ 76 (365)
T 1h7s_A 15 IKPIDRKSVHQICSGQVVLSLSTAVKELVENSLDAG------------------ATNIDLKLKDYGVDLIEVSDNGCGVE 76 (365)
T ss_dssp --------------CEEECCHHHHHHHHHHHHHHTT------------------CSEEEEEEEGGGTSEEEEEECSCCCC
T ss_pred hccCCHHHHHHhcCCCchhhHHHHHHHHHHHHHHCC------------------CCEEEEEEEeCCcEEEEEEECCCCcC
Confidence 677888888888886 5889999999999993 2245555533 346899999999999
Q ss_pred HHHHHHHHhhhhcccchhHHHHhhhcccCCCCCcccccccchhhhhhccccEEEEEEecCCCCceEEEEEecCCCceEEe
Q 007698 163 KEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSSYVIR 242 (592)
Q Consensus 163 ~eeL~~~L~tIa~Sgt~~f~~~l~~~~~~~~~~~~IGqFGIGf~S~F~VadkV~V~Sr~~~~~~~~~W~s~~~~~~y~I~ 242 (592)
++++...+.++++|. .....+ .......|++|+|++|++++| +++|+|++.+...+|.|....+ +.+...
T Consensus 77 ~~~l~~~f~~~~tsK-------~~~~~d-l~~i~s~G~rG~gl~si~~vs-~v~v~t~~~~~~~~~~~~~~~~-G~~~~~ 146 (365)
T 1h7s_A 77 EENFEGLTLKHHTSK-------IQEFAD-LTQVETFGFRGEALSSLCALS-DVTISTCHASAKVGTRLMFDHN-GKIIQK 146 (365)
T ss_dssp GGGSGGGGC-----------------CC-TTCSEEESSSSSHHHHHHHHS-EEEEEEECTTCSSCEEEEECTT-SCEEEE
T ss_pred HHHHHHHhhhccccc-------cccccc-hhcccccCCCCchhhhhhhhc-cEEEEEccCCCcceEEEEEcCC-CceEee
Confidence 999999999988772 111000 112245799999999999999 9999999987677899988633 455432
Q ss_pred ecCCCCccCCCCcEEEEE-eecCCc---cCCC-----chhHHHHHHHHhhccCccc-eee
Q 007698 243 EETDPEKLLKRGTQITLY-LKEDDK---YEFS-----EPTRIQGLVKNYSQFVSFP-IYT 292 (592)
Q Consensus 243 ~~~~~~~~~~~GT~I~L~-Lk~~~~---~e~l-----e~~~i~~lvk~ys~fl~~P-I~~ 292 (592)
... ..++||+|+++ |..... .+|+ +..+|.+++++|+ +.+| |.+
T Consensus 147 ~~~----~~~~GT~V~v~~LF~n~P~R~k~flk~~~~e~~~i~~~v~~~a--l~~p~v~f 200 (365)
T 1h7s_A 147 TPY----PRPRGTTVSVQQLFSTLPVRHKEFQRNIKKEYAKMVQVLHAYC--IISAGIRV 200 (365)
T ss_dssp EEC----CCCSEEEEEEESTTTTSHHHHHHHHHTHHHHHHHHHHHHHHHH--HHCTTCEE
T ss_pred ccc----CCCCCcEEEEeecccccchhhhhhccchHHHHHHHHHhhhhhh--hcCCceEE
Confidence 211 14789999998 322110 0122 3468999999999 5555 444
No 25
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=99.79 E-value=5.3e-19 Score=187.69 Aligned_cols=155 Identities=19% Similarity=0.136 Sum_probs=108.5
Q ss_pred HccCCCchhhHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeC-CCCcEEEEEeCCCCCCHHHHHHHHhhhhcc
Q 007698 98 HSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPD-PENGTITITDTGIGMTKEELVDCLGTIAQS 176 (592)
Q Consensus 98 ~~LYs~~~vfLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d-~~~~~L~I~DNGiGMt~eeL~~~L~tIa~S 176 (592)
......+..+|+|||+||+||. ...|.|.+. .+...|+|.|||+||+++++...+..+++|
T Consensus 20 gevi~~~~~vv~eLv~NaiDA~------------------a~~I~I~i~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~ts 81 (367)
T 3h4l_A 20 GQVITDLTTAVKELVDNSIDAN------------------ANQIEIIFKDYGLESIECSDNGDGIDPSNYEFLALKHYTS 81 (367)
T ss_dssp HHHCCSHHHHHHHHHHHHHHTT------------------CSEEEEEEETTTTSEEEEEECSCCCCGGGTTTTTCCEEC-
T ss_pred CCcccCHHHHHHHHHHHHHHCC------------------CCEEEEEEEeCCEEEEEEEECCCCcChhHhccceeccccC
Confidence 3445678889999999999993 224555553 334689999999999999998776666666
Q ss_pred cchhHHHHhhhcccCCCCCcccccccchhhhhhccccEEEEEEecCCCCceEEEEEecCCCceE-EeecCCCCccCCCCc
Q 007698 177 GTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSSYV-IREETDPEKLLKRGT 255 (592)
Q Consensus 177 gt~~f~~~l~~~~~~~~~~~~IGqFGIGf~S~F~VadkV~V~Sr~~~~~~~~~W~s~~~~~~y~-I~~~~~~~~~~~~GT 255 (592)
. +....+ .......|.+|+|++|+++|| +|+|+||+.+ +.++.|....+ |.+. ..+.. .++||
T Consensus 82 K-------~~~~~D-l~~i~t~GfrGeaL~Si~avS-~l~V~sr~~~-~~~~~~~~~~~-G~~~~~~~~~-----~~~GT 145 (367)
T 3h4l_A 82 K-------IAKFQD-VAKVQTLGFRGEALSSLCGIA-KLSVITTTSP-PKADKLEYDMV-GHITSKTTTS-----RNKGT 145 (367)
T ss_dssp ----------------CCCCEEEETTHHHHHHHHSS-EEEEEEESST-TCEEEEEECTT-CCEEEEEEEC-----CSSEE
T ss_pred c-------CCchhh-hhhhhccCccchHHHHhhccC-EEEEEEEECC-CCEEEEEEcCC-CcEEeecccc-----CCCCe
Confidence 2 221100 122345788899999999998 6999999976 77899988633 4554 23332 47999
Q ss_pred EEEEE-------------eecCCccCCCchhHHHHHHHHhhccCccc-eee
Q 007698 256 QITLY-------------LKEDDKYEFSEPTRIQGLVKNYSQFVSFP-IYT 292 (592)
Q Consensus 256 ~I~L~-------------Lk~~~~~e~le~~~i~~lvk~ys~fl~~P-I~~ 292 (592)
+|++. ++.... + ..+|++++++|+ +.+| |.+
T Consensus 146 tV~v~~LF~n~P~R~k~flk~~~~-e---~~~i~~~l~~~A--l~~p~v~~ 190 (367)
T 3h4l_A 146 TVLVSQLFHNLPVRQKEFSKTFKR-Q---FTKCLTVIQGYA--IINAAIKF 190 (367)
T ss_dssp EEEEESTTTTCHHHHHHHHTTHHH-H---HHHHHHHHHHHH--HHCTTCEE
T ss_pred EEEEchhhccCchhhhhhccchHH-H---HHHHHHHHHHHH--hhCCCeEE
Confidence 99995 343323 3 368999999999 6677 554
No 26
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=99.79 E-value=1.9e-19 Score=189.63 Aligned_cols=275 Identities=19% Similarity=0.216 Sum_probs=159.4
Q ss_pred HccCCCchhhHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCC-CcEEEEEeCCCCCCHHHHHHHHhhhhcc
Q 007698 98 HSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE-NGTITITDTGIGMTKEELVDCLGTIAQS 176 (592)
Q Consensus 98 ~~LYs~~~vfLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~-~~~L~I~DNGiGMt~eeL~~~L~tIa~S 176 (592)
......+..+|.|||+||+||. ...|.|.++.+ ...|+|.|||+||+++++...+..+++|
T Consensus 23 gevi~~~~~vv~eLv~NAidA~------------------a~~I~I~i~~~~~~~I~V~DnG~GI~~~~l~~~~~~~~ts 84 (348)
T 3na3_A 23 GEVIQRPANAIKEMIENCLDAK------------------STSIQVIVKEGGLKLIQIQDNGTGIRKEDLDIVCERFTTS 84 (348)
T ss_dssp HHHCCSHHHHHHHHHHHHHHTT------------------CSEEEEEEEGGGTSEEEEEECSCCCCGGGGGTTTSTTCCS
T ss_pred cCcccCHHHHHHHHHHHHHHcC------------------CCEEEEEEEeCCEEEEEEEECCcCcChHHhhhhhcccccc
Confidence 4455778899999999999993 22455555443 3469999999999999998777666666
Q ss_pred cchhHHHHhhhcccCCCCCcccccccchhhhhhccccEEEEEEecCCCCceEEEEEecCCCce--EEeecCCCCccCCCC
Q 007698 177 GTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSSY--VIREETDPEKLLKRG 254 (592)
Q Consensus 177 gt~~f~~~l~~~~~~~~~~~~IGqFGIGf~S~F~VadkV~V~Sr~~~~~~~~~W~s~~~~~~y--~I~~~~~~~~~~~~G 254 (592)
- +....+ .......|.+|+|++|+.+|| +++|+||+.++..+|.|...+| .. .+.+.. .++|
T Consensus 85 K-------~~~~~d-l~~i~s~GfrGeaL~Si~avs-~l~v~sr~~~~~~~~~~~~~~G--~~~~~~~~~~-----~~~G 148 (348)
T 3na3_A 85 K-------LQSFED-LASISTYGFRGEALASISHVA-HVTITTKTADGKCAYRASYSDG--KLKAPPKPCA-----GNQG 148 (348)
T ss_dssp S-------CCCC----------CCTTCHHHHHHHSS-EEEEEEECTTCSSEEEEEEETT--EESSCCEEEC-----CCSE
T ss_pred c-------cCcchh-hhccccCCcCChHHHHhhccc-EEEEEEEECCCCceEEEEEeCC--EEeeeeeEec-----CCCC
Confidence 2 211000 112345799999999999998 8999999987778999988643 32 133332 4789
Q ss_pred cEEEEE------------eecCCccCCCchhHHHHHHHHhhccCccc-eeeccccccccccccccCCCCCCCCccccccc
Q 007698 255 TQITLY------------LKEDDKYEFSEPTRIQGLVKNYSQFVSFP-IYTWQEKSRTIEVEEEEKPEEGEEQPEGEKKT 321 (592)
Q Consensus 255 T~I~L~------------Lk~~~~~e~le~~~i~~lvk~ys~fl~~P-I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (592)
|+|++. |+.... +..+|++++++|+ +..| |.+
T Consensus 149 TtV~v~~LF~n~P~R~k~lk~~~~----e~~~i~~~l~~~A--l~~p~v~f----------------------------- 193 (348)
T 3na3_A 149 TQITVEDLFYNIATRRKALKNPSE----EYGKILEVVGRYS--VHNAGISF----------------------------- 193 (348)
T ss_dssp EEEEEESTTTTCHHHHHTSCCHHH----HHHHHHHHHHHHH--HHCTTCEE-----------------------------
T ss_pred cEEEECcccccCchhhhhccccHH----HHHHHHHHHHHHH--hhCCCeEE-----------------------------
Confidence 999996 343322 2378999999999 6666 554
Q ss_pred ccccccccccceeeeecCCCc--cccCCCCCChHHHHHHHHHhhc-CCCCCcccccccccc-ceEEEEEEEeeCCCCCCc
Q 007698 322 KKTTKTEKYWDWELANETKPI--WMRNPKEIEKDEYHEFYKKTFN-EFLDPLAYTHFTTEG-EVEFRSVLYIPGMGPLNN 397 (592)
Q Consensus 322 ~~k~~~~~~~~~e~~N~~~~i--W~r~~~~i~~eey~~Fyk~~~~-~~~dpL~~~h~~~eg-~~~~~~llyiP~~~p~~~ 397 (592)
.+.++++.. |...+.. ...+....+++ ++...|..+....++ .+.++|++.-|...
T Consensus 194 ------------~l~~~g~~~~~~~~~~~~----~~~~~i~~i~G~~~~~~l~~v~~~~~~~~~~i~G~is~p~~~---- 253 (348)
T 3na3_A 194 ------------SVKKQGETVADVRTLPNA----STVDNIRSIFGNAVSRELIEIGCEDKTLAFKMNGYISNANYS---- 253 (348)
T ss_dssp ------------EEEETTCSSCSEECCTTC----CHHHHHHHHHCHHHHTTEEEEEEEEGGGTEEEEEEEECSSCC----
T ss_pred ------------EEEECCEEEEEeecCCCC----CHHHHHHHHhChHhHhhcEEEEeecCCccEEEEEEEeCCccC----
Confidence 222333332 2211111 23334445553 222344444444432 48899988777642
Q ss_pred cccccccccCeEEEeeceeeccCCC--------CCcccc--c-ccccceeccCCCCCCccc---hHHh--hhcHHHHHHH
Q 007698 398 EEIMNPKTKNIRLYVKRVFISDDFD--------GELFPR--Y-LSFVKGVVDSDDLPLNVS---REIL--QESRIVRIMR 461 (592)
Q Consensus 398 ~~~~~~~~~~i~LYv~rvfI~d~~~--------~~llP~--~-l~Fv~GVVDS~dLplNvS---RE~l--q~~~~l~~ir 461 (592)
.++..+.+|||+++|.+..= ..++|. | ..|+.--+|.+.+-.||. ||.. .+..++..|+
T Consensus 254 -----~~~~~q~~fVNgR~v~~~~l~~ai~~~y~~~l~~~~~P~~~L~l~~~p~~vDVNvhP~K~eV~f~~e~~i~~~i~ 328 (348)
T 3na3_A 254 -----VKKCIFLLFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISPQNVDVNVHPTKHEVHFLHEESILERVQ 328 (348)
T ss_dssp -----BSSCEEEEEETTEECCCTTHHHHHHHHHHTTSCTTCBCEEEEEEECC----------------------CTHHHH
T ss_pred -----CCcccEEEEECCeEecCHHHHHHHHHHHHHhCcCCCceEEEEEEEeChhheeeeeCCCcCEEEEcCHHHHHHHHH
Confidence 12345799999999987620 234553 2 233444567778888887 7753 4445556655
Q ss_pred HHHHH
Q 007698 462 KRLVR 466 (592)
Q Consensus 462 k~l~~ 466 (592)
+.|.+
T Consensus 329 ~~v~~ 333 (348)
T 3na3_A 329 QHIES 333 (348)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55444
No 27
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=99.33 E-value=6.4e-12 Score=122.97 Aligned_cols=156 Identities=17% Similarity=0.156 Sum_probs=88.4
Q ss_pred chhhHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHHHH--------HH-HHhhhh
Q 007698 104 KEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEEL--------VD-CLGTIA 174 (592)
Q Consensus 104 ~~vfLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL--------~~-~L~tIa 174 (592)
+..+|+|||.||+||..+ .....|.|.++.+ +.|+|.|||.||+.+++ .. ....+|
T Consensus 18 ~~~~v~Elv~NsiDa~~~--------------g~a~~I~V~i~~~-g~i~V~DnG~GIp~~~~~~~~~~~~e~i~~~~ha 82 (201)
T 3fv5_A 18 PNHLGQEVIDNSVDEALA--------------GHAKRVDVILHAD-QSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHA 82 (201)
T ss_dssp THHHHHHHHHHHHHHHHT--------------TCCSEEEEEECTT-SCEEEEECSSCCCCSBCTTCSSBHHHHHHHCC--
T ss_pred hhhhhHHHHHHHHHHHhc--------------CCCcEEEEEEeCC-CEEEEEECCCCcCcccccccCcchhheeeeeecc
Confidence 478999999999999631 1234677777654 58999999999999883 22 223344
Q ss_pred cccchhHHHHhhhcccCCCCCcccccccchhhhhhccccEEEEEEecCCCCceEEEEEecCCCceE--EeecCCCCccCC
Q 007698 175 QSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSSYV--IREETDPEKLLK 252 (592)
Q Consensus 175 ~Sgt~~f~~~l~~~~~~~~~~~~IGqFGIGf~S~F~VadkV~V~Sr~~~~~~~~~W~s~~~~~~y~--I~~~~~~~~~~~ 252 (592)
+| +| .. .......|..|+|+.|+..++++++|+|+..+ ..|...... +... +...... ...+
T Consensus 83 ts---K~----~~----~~~~~s~GfrGeglssinalS~~l~v~t~~~g--~~~~~~~~~--G~~~~~~~~~g~~-~~~~ 146 (201)
T 3fv5_A 83 GG---KF----SN----KNYQFSGGLHGVGISVVNALSKRVEVNVRRDG--QVYNIAFEN--GEKVQDLQVVGTC-GKRN 146 (201)
T ss_dssp ------------------------------CHHHHHTEEEEEEEEEETT--EEEEEEEET--TEEEEEEEEEEEC-CTTC
T ss_pred cc---Cc----CC----CcccccCcccceecchhhcccceEEEEEEecC--ceEEEEEeC--CEEcccceecccC-CCCC
Confidence 43 22 21 01123589999999999999999999999853 344433332 3322 2221110 0136
Q ss_pred CCcEEEEEeecCC-ccCCCchhHHHHHHHHhhccCccc-eee
Q 007698 253 RGTQITLYLKEDD-KYEFSEPTRIQGLVKNYSQFVSFP-IYT 292 (592)
Q Consensus 253 ~GT~I~L~Lk~~~-~~e~le~~~i~~lvk~ys~fl~~P-I~~ 292 (592)
.||+|++...... ...-.+...|.+++++|+ +..| |.+
T Consensus 147 ~GT~V~f~Pdr~~F~~~~~e~~~i~~~l~~lA--~l~pgv~~ 186 (201)
T 3fv5_A 147 TGTSVHFWPDETFFDSPRFSVSRLTHVLKAKA--VLCPGVEI 186 (201)
T ss_dssp CEEEEEEEECGGGSSCCCCCHHHHHHHHHHHH--HHSTTCEE
T ss_pred CCeEEEEEECHHHcCCCccCHHHHHHHHHHHH--HhCCCCEE
Confidence 8999999732210 001245688999999998 5566 444
No 28
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=99.26 E-value=1.6e-10 Score=123.64 Aligned_cols=156 Identities=16% Similarity=0.159 Sum_probs=99.5
Q ss_pred hhhHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHHH--------HHHHHhh-hhc
Q 007698 105 EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEE--------LVDCLGT-IAQ 175 (592)
Q Consensus 105 ~vfLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~ee--------L~~~L~t-Ia~ 175 (592)
...|.|||.||+||... .....|.|.++.+ +.|+|+|||.||+.++ +...|.+ +|.
T Consensus 33 ~~lv~ElvdNsiD~a~~--------------g~a~~I~V~i~~~-g~I~V~DnG~GIp~~~~~~~~~~~~e~v~~~lhag 97 (390)
T 1s16_A 33 NHLGQEVIDNSVDEALA--------------GHAKRVDVILHAD-QSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAG 97 (390)
T ss_dssp HHHHHHHHHHHHHHHHT--------------TCCSEEEEEECTT-SCEEEEECSSCCCCSBCTTTCSBHHHHHHHCTTEE
T ss_pred HHHHHHHHHHHHHHHhc--------------CCCCEEEEEEecC-CEEEEEECCCCcCcccccccCcchhhheeeeeccc
Confidence 57899999999999521 1234677777665 4899999999999988 5656666 443
Q ss_pred ccchhHHHHhhhcccCCCCCcccccccchhhhhhccccEEEEEEecCCCCceEEEEEecCCCceEEeecCCCCccCCCCc
Q 007698 176 SGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSSYVIREETDPEKLLKRGT 255 (592)
Q Consensus 176 Sgt~~f~~~l~~~~~~~~~~~~IGqFGIGf~S~F~VadkV~V~Sr~~~~~~~~~W~s~~~~~~y~I~~~~~~~~~~~~GT 255 (592)
| + | .. ......-|..|+|+.++-.++++++|+|+..+ ..|..+...|.....+.+.... ...++||
T Consensus 98 s-K--f----~~----~~~~~sgGl~GvGls~vnalS~~l~v~~~r~g--~~~~~~~~~G~~~~~~~~~g~~-~~~~~GT 163 (390)
T 1s16_A 98 G-K--F----SN----KNYQFSGGLHGVGISVVNALSKRVEVNVRRDG--QVYNIAFENGEKVQDLQVVGTC-GKRNTGT 163 (390)
T ss_dssp S-C--S----SS----SSCSSCSCCSSCHHHHHHHTEEEEEEEEEETT--EEEEEEEETTEEEEEEEEEEEC-CTTCCEE
T ss_pred C-C--c----CC----CcccccCCccccchHHHHHhhcccEEEEEECC--cEEEEEEeCCcccccceecccc-cCCCCce
Confidence 3 2 2 11 11123578999999999999999999999743 4554444432111112222110 0026899
Q ss_pred EEEEEeecCC--ccCCCchhHHHHHHHHhhccCccc-eee
Q 007698 256 QITLYLKEDD--KYEFSEPTRIQGLVKNYSQFVSFP-IYT 292 (592)
Q Consensus 256 ~I~L~Lk~~~--~~e~le~~~i~~lvk~ys~fl~~P-I~~ 292 (592)
+|++...... . .-.+...|.+.++.++ +..| |.+
T Consensus 164 ~V~f~Pd~~~F~~-~~~e~~~l~~rl~~lA--~lnpgv~i 200 (390)
T 1s16_A 164 SVHFWPDETFFDS-PRFSVSRLTHVLKAKA--VLCPGVEI 200 (390)
T ss_dssp EEEEEECGGGSSC-CSCCHHHHHHHHHHHH--HHSTTCEE
T ss_pred EEEEEECccccCc-ccccHHHHHHHHHHHH--hcCCCcEE
Confidence 9998832210 0 1145678999999998 5555 443
No 29
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=99.23 E-value=1.2e-10 Score=124.52 Aligned_cols=154 Identities=20% Similarity=0.244 Sum_probs=96.4
Q ss_pred hhhHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHHHHHH--------HHhhhhcc
Q 007698 105 EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVD--------CLGTIAQS 176 (592)
Q Consensus 105 ~vfLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~--------~L~tIa~S 176 (592)
...|+|||.||+|+.- +. ....|.|.++.+ ..|+|+|||.||+.+++.. .+... ..
T Consensus 34 ~~~v~Elv~N~iD~a~--~~------------~~~~I~V~i~~~-~~i~V~DnG~GIp~~~~~~~~~~~~e~if~~~-~~ 97 (390)
T 1kij_A 34 HHLFKEILDNAVDEAL--AG------------YATEILVRLNED-GSLTVEDNGRGIPVDLMPEEGKPAVEVIYNTL-HS 97 (390)
T ss_dssp HHHHHHHHHHHHHHHH--TT------------SCCEEEEEECTT-SCEEEEECSSCCCCSEETTTTEEHHHHHHHSS-CE
T ss_pred HHHHHHHHHHHHHHhh--hC------------CCCEEEEEEEcC-CEEEEEEcCCCCCHHHhhhccccchhhheeee-ee
Confidence 4589999999999962 21 234577777654 4999999999999998743 33332 22
Q ss_pred cchhHHHHhhhcccCCCCCcccccccchhhhhhccccEEEEEEecCCCCceEEEEEecCCCceEEeecCCCCccCCCCcE
Q 007698 177 GTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSSYVIREETDPEKLLKRGTQ 256 (592)
Q Consensus 177 gt~~f~~~l~~~~~~~~~~~~IGqFGIGf~S~F~VadkV~V~Sr~~~~~~~~~W~s~~~~~~y~I~~~~~~~~~~~~GT~ 256 (592)
|.+ | .. .......|..|+|+.++..++++++|+|++.+ ..|.+.-..|.....+.+.... ...++||+
T Consensus 98 ~~k-f----~~----~~~~~s~G~~G~Gls~v~als~~~~v~t~~~g--~~~~~~~~~G~~~~~~~~~~~~-~~~~~GT~ 165 (390)
T 1kij_A 98 GGK-F----EQ----GAYKVSGGLHGVGASVVNALSEWTVVEVFREG--KHHRIAFSRGEVTEPLRVVGEA-PRGKTGTR 165 (390)
T ss_dssp ESG-G----GG----SSCCCCSCSSTTSHHHHHHTEEEEEEEEEETT--EEEEEEEETTEEEEEEEEEEEC-GGGCCEEE
T ss_pred ccc-c----cC----ccccccCCCCCcceeeecccccceEEEEecCC--cEEEEEEcCCcccccceeeccc-cCCCCCcE
Confidence 221 2 11 11123468999999999999999999999753 4454444433112223322210 00368999
Q ss_pred EEEEeecCC--ccCCCchhHHHHHHHHhhccCccc
Q 007698 257 ITLYLKEDD--KYEFSEPTRIQGLVKNYSQFVSFP 289 (592)
Q Consensus 257 I~L~Lk~~~--~~e~le~~~i~~lvk~ys~fl~~P 289 (592)
|++...... . .-.+...|.+.++.++ +..|
T Consensus 166 V~f~Pd~~~F~~-~~~~~~~l~~rl~~~A--~lnp 197 (390)
T 1kij_A 166 VTFKPDPEIFGN-LRFDPSKIRARLREVA--YLVA 197 (390)
T ss_dssp EEEEECHHHHTT-CCCCHHHHHHHHHHHH--HHTT
T ss_pred EEEEEChHHhCC-ccccHHHHHHHHHHhc--CcCC
Confidence 999732210 1 1135678999999998 4455
No 30
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=99.23 E-value=5.3e-10 Score=118.79 Aligned_cols=150 Identities=11% Similarity=0.085 Sum_probs=93.5
Q ss_pred chhhHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHHHHHHHHhhhhcccchhHHH
Q 007698 104 KEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLK 183 (592)
Q Consensus 104 ~~vfLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~L~tIa~Sgt~~f~~ 183 (592)
+...|+|||.||+||... +....|.|.++.++ .|+|+|||.||+. |+.- ..+|.|
T Consensus 31 l~~~v~ElvdNsiDe~~~--------------g~a~~I~V~i~~~g-~I~V~DnGrGIp~-e~v~--~lhags------- 85 (369)
T 3cwv_A 31 LHHLVYFLLDVAYEEARR--------------GECRDVVLEVGGDG-SIALFCTSRTVTA-ENLV--RVATGA------- 85 (369)
T ss_dssp HHHHHHHHHHHHHHHHHT--------------TCCSEEEEEECTTS-CEEEEEEESSCCH-HHHH--HHHTTT-------
T ss_pred HHHHHHHHHhhhHhHHhh--------------CCCCEEEEEEeCCC-EEEEEECCCCcCH-hHee--eeecCC-------
Confidence 456899999999999521 13456777776654 8999999999999 6653 445554
Q ss_pred HhhhcccCCCCCcccccccchhhhhhccccEEEEEEecCCCCceEEEEEecCCCce-----EEeecCCCCccCCCCcEEE
Q 007698 184 ALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSSY-----VIREETDPEKLLKRGTQIT 258 (592)
Q Consensus 184 ~l~~~~~~~~~~~~IGqFGIGf~S~F~VadkV~V~Sr~~~~~~~~~W~s~~~~~~y-----~I~~~~~~~~~~~~GT~I~ 258 (592)
|+... + ..+ ..+.-| |..++-.++.+++|+|++.+ ..|..+-.. +.. .+.+........++||+|+
T Consensus 86 Kf~~~-~-~~~--~y~vsG-Gls~vnalSs~l~v~t~r~g--~~~~~~~~~--G~~~~~~~~~~~l~~~g~~~~~GT~V~ 156 (369)
T 3cwv_A 86 GFLGR-P-PGD--GWGWDS-MLVVSLALSSRYQVDIWADG--RQWRVMGEH--GHPQGEGAAVTPMEPMPVSAERGVRVH 156 (369)
T ss_dssp TGGGS-S-CCC--STTTTS-SHHHHHHTEEEEEEEEEETT--EEEEEEEET--TEECTTCEEESSCCCCSSCCSEEEEEE
T ss_pred CcCCC-c-ccc--cccccC-HHHHHHHhhceEEEEEEECC--CEEEEEEeC--CcccccccccCCceEecccCCCCCEEE
Confidence 23210 0 001 122224 88888999999999999853 355544443 222 0221111111246899999
Q ss_pred EEeecCCccCC----CchhHHHHHHHHhhccCccc-eee
Q 007698 259 LYLKEDDKYEF----SEPTRIQGLVKNYSQFVSFP-IYT 292 (592)
Q Consensus 259 L~Lk~~~~~e~----le~~~i~~lvk~ys~fl~~P-I~~ 292 (592)
+.. +.. .| .+...|.+.+++++ +..| |.+
T Consensus 157 f~P--d~~-~F~~~~~e~~~l~~rl~~lA--~lnpgv~i 190 (369)
T 3cwv_A 157 FVP--DAT-IFEVLAFDRARLSRRCNELA--ALAPGLRV 190 (369)
T ss_dssp EEE--CTT-TCSCCCCCHHHHHHHHHHHH--HHSTTCEE
T ss_pred EEE--CHH-HhCCccccHHHHHHHHHHHc--CcCCCcEE
Confidence 882 222 23 45678999999999 5556 443
No 31
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=99.15 E-value=9.6e-10 Score=117.64 Aligned_cols=150 Identities=17% Similarity=0.155 Sum_probs=96.9
Q ss_pred CchhhHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHHH--------HHHHHhhhh
Q 007698 103 HKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEE--------LVDCLGTIA 174 (592)
Q Consensus 103 ~~~vfLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~ee--------L~~~L~tIa 174 (592)
++...|.|||.||+||..+ +....|.|.++.+ +.|+|+|||.||+.++ +.-.|...-
T Consensus 34 gl~~lv~ElvdNsiDea~~--------------g~a~~I~V~i~~~-g~I~V~DnG~GIp~~~~~~~~~~~~elv~~~lh 98 (391)
T 1ei1_A 34 GLHHMVFEVVDNAIDEALA--------------GHCKEIIVTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLH 98 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHT--------------TCCCEEEEEECTT-SCEEEEECSSCCCCSBCTTTSSBHHHHHHHSTT
T ss_pred CHHHHHHHHHHhHHHHHhc--------------CCCCEEEEEEeCC-CEEEEEECCCCcccCcccccCcchHHHhheecc
Confidence 4567899999999999521 1234677777665 4999999999999988 333455332
Q ss_pred cccchhHHHHhhhcccCCCCCcccccccchhhhhhccccEEEEEEecCCCCceEEEEEecCCC--ceEEeecCCCCccCC
Q 007698 175 QSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSS--SYVIREETDPEKLLK 252 (592)
Q Consensus 175 ~Sgt~~f~~~l~~~~~~~~~~~~IGqFGIGf~S~F~VadkV~V~Sr~~~~~~~~~W~s~~~~~--~y~I~~~~~~~~~~~ 252 (592)
.+|+ +.. ..-...-|..|+|..++-.++.+++|+|+..+ ..|..+-..|.. ...+... ..+
T Consensus 99 agsK------f~~----~~~~vSgGl~GvGls~vnalS~~l~v~~~r~g--~~~~~~~~~G~~~~~l~~~~~-----~~~ 161 (391)
T 1ei1_A 99 AGGK------FDD----NSYKVSGGLHGVGVSVVNALSQKLELVIQREG--KIHRQIYEHGVPQAPLAVTGE-----TEK 161 (391)
T ss_dssp EESC------SSS----SSCSSCSCCSSCHHHHHHHTEEEEEEEEEETT--EEEEEEEETTEESSCCEEEEE-----CSC
T ss_pred ccCC------cCC----CcccccCCccccchHHHHHhcCeEEEEEEeCC--cEEEEEEcCCcccccceeccC-----cCC
Confidence 3322 211 11223578999999999999999999999753 445444433210 0111111 136
Q ss_pred CCcEEEEEeecCCccCC-----CchhHHHHHHHHhhccCccc
Q 007698 253 RGTQITLYLKEDDKYEF-----SEPTRIQGLVKNYSQFVSFP 289 (592)
Q Consensus 253 ~GT~I~L~Lk~~~~~e~-----le~~~i~~lvk~ys~fl~~P 289 (592)
+||+|++.. +.. .| .+...|.+.++.++ +..|
T Consensus 162 ~GT~V~f~P--d~~-~F~~~~~~e~~~l~~rlr~lA--~lnp 198 (391)
T 1ei1_A 162 TGTMVRFWP--SLE-TFTNVTEFEYEILAKRLRELS--FLDS 198 (391)
T ss_dssp CEEEEEEEE--CTT-TCCSCCSCCHHHHHHHHHHHH--HHST
T ss_pred CccEEEEEE--Chh-hhCCccccCHHHHHHHHHHhc--ccCC
Confidence 899999972 222 22 24578999999998 5455
No 32
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=99.01 E-value=5.3e-10 Score=122.32 Aligned_cols=153 Identities=22% Similarity=0.307 Sum_probs=98.6
Q ss_pred hhHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCC---CCcEEEEEeCCCCCCHHHHHHHHhhhhcccchhHH
Q 007698 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDP---ENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFL 182 (592)
Q Consensus 106 vfLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~---~~~~L~I~DNGiGMt~eeL~~~L~tIa~Sgt~~f~ 182 (592)
.+|+|||+||+||...- ...+.+.|.+..+. +.-.|+|+|||+||+.+++...+.....+++.
T Consensus 35 qvl~nLv~NAida~~~g-----------g~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~--- 100 (471)
T 1mu5_A 35 QTVRELIENSLDATDVH-----------GILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKY--- 100 (471)
T ss_dssp HHHHHHHHHHHHTTGGG-----------TCCCEEEEEEEEEETTTTEEEEEEECCSCCCCGGGHHHHHHCCCCC-CC---
T ss_pred HHHHHHHHHHHHHhhcC-----------CCceEEEEEEEECCCcCcEEEEEEEECCCCCCHHHHHHHhccccccccc---
Confidence 47899999999995310 00013444444322 33579999999999999998877765333210
Q ss_pred HHhhhcccCCCCCcccccccchhhhhhccccE-----EEEEEecCCCCceEEEEEec-----CCCceEEeecCCCCccCC
Q 007698 183 KALKENNDLGADNGLIGQFGVGFYSAFLVAQK-----VVVSTKSPRSDKQYVWEAEA-----DSSSYVIREETDPEKLLK 252 (592)
Q Consensus 183 ~~l~~~~~~~~~~~~IGqFGIGf~S~F~Vadk-----V~V~Sr~~~~~~~~~W~s~~-----~~~~y~I~~~~~~~~~~~ 252 (592)
......|.+|+|++++..+++. +.|.|+..+...++.|.-.- ++..+...+... ...+
T Consensus 101 ----------~~~~~~gg~GLGL~iv~~l~~~~gG~~i~v~S~~~~g~~~~~~~Lpl~~~~~~g~~~~~~~~~~--~~~~ 168 (471)
T 1mu5_A 101 ----------VNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPIIVERGSVEN--TRGF 168 (471)
T ss_dssp ----------CCSCCSCSCTTTHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEECTTTCCEEEEEEEEEEC--CTTC
T ss_pred ----------ccccCCCCceeeHHHHHHHHHHhCCCceeEEEecCCCceEEEEEEeccccccCCcccccccccC--CCCC
Confidence 1224568899999999999886 99999875433355554321 111233333211 1246
Q ss_pred CCcEEEEEeecCCccCCCchhHHHHHHHHhhccCccc
Q 007698 253 RGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFP 289 (592)
Q Consensus 253 ~GT~I~L~Lk~~~~~e~le~~~i~~lvk~ys~fl~~P 289 (592)
+||+|++.++.++. ++ ..+|.+++++|+ +.+|
T Consensus 169 ~GT~V~v~l~~~~~-e~--~~~I~~~l~~~a--l~~p 200 (471)
T 1mu5_A 169 HGTSVAISIPGDWP-KA--KSRIYEYIKRTY--IITP 200 (471)
T ss_dssp CEEEEEEEEECCHH-HH--HHHHHHHHHHHH--HHCT
T ss_pred CCEEEEEEEcCCcc-hH--HHHHHHHHHHHH--hHCC
Confidence 89999999987544 32 258999999998 4455
No 33
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=98.97 E-value=8.7e-10 Score=122.20 Aligned_cols=153 Identities=22% Similarity=0.314 Sum_probs=99.2
Q ss_pred hhHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCC---CCcEEEEEeCCCCCCHHHHHHHHhhhhcccchhHH
Q 007698 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDP---ENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFL 182 (592)
Q Consensus 106 vfLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~---~~~~L~I~DNGiGMt~eeL~~~L~tIa~Sgt~~f~ 182 (592)
.+|+|||+||+||... + ...+.+.|.+..+. +...|+|.|||+||+.+++...+.....+++.
T Consensus 34 qvl~NLV~NAida~~~-------g----g~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~--- 99 (530)
T 2zbk_B 34 QTVRELIENSLDATDV-------H----GILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKY--- 99 (530)
T ss_dssp HHHHHHHHHHHTTTTT-------T----TCCCCCEEEEEEEETTTTEEEEEEECCSCCCCGGGSHHHHTSCCCSCCC---
T ss_pred HHHHHHHHHHHHHHhc-------c----CCCeEEEEEEEECCCcCceEEEEEEECCCCCCHHHHHHHhccccccCCc---
Confidence 4789999999999521 0 00114566665433 34579999999999999998877765332210
Q ss_pred HHhhhcccCCCCCcccccccchhhhhhcccc-----EEEEEEecCCCCceEEEEEe--c---CCCceEEeecCCCCccCC
Q 007698 183 KALKENNDLGADNGLIGQFGVGFYSAFLVAQ-----KVVVSTKSPRSDKQYVWEAE--A---DSSSYVIREETDPEKLLK 252 (592)
Q Consensus 183 ~~l~~~~~~~~~~~~IGqFGIGf~S~F~Vad-----kV~V~Sr~~~~~~~~~W~s~--~---~~~~y~I~~~~~~~~~~~ 252 (592)
......|..|+|++++..+++ .+.|.|+..+...++.+... . ++......+... ...+
T Consensus 100 ----------~~~~~~gg~GLGLsiv~~l~~~~gG~~I~V~S~~~~g~~~~~~~Lpl~~~~~~g~~~~~~~~~~--~~~~ 167 (530)
T 2zbk_B 100 ----------VNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPIIVERGSVEN--TRGF 167 (530)
T ss_dssp ----------CCSCCSCSSSSHHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEEETTTTEEEEEEEEEEEC--CSSC
T ss_pred ----------ccccCCCCccchHHHHHHHHHHhCCCceEEEEecCCCeEEEEEEEEecccccCCccccccccCC--CCCC
Confidence 122457899999999999988 69999987543335555421 1 111222333211 1246
Q ss_pred CCcEEEEEeecCCccCCCchhHHHHHHHHhhccCccc
Q 007698 253 RGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFP 289 (592)
Q Consensus 253 ~GT~I~L~Lk~~~~~e~le~~~i~~lvk~ys~fl~~P 289 (592)
+||+|++.++.++. ++ ..++.+++++|+ +.+|
T Consensus 168 ~GT~V~v~l~~~~~-e~--~~~i~~~l~~~A--l~~p 199 (530)
T 2zbk_B 168 HGTSVAISIPGDWP-KA--KSRIYEYIKRTY--IITP 199 (530)
T ss_dssp CEEEEEEEEECCHH-HH--HHHHHHHHHHHH--HHCT
T ss_pred CCcEEEEEeccchh-hH--HHHHHHHHHHHH--HHCC
Confidence 89999999987544 32 268999999998 4445
No 34
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=98.84 E-value=1.2e-08 Score=101.04 Aligned_cols=147 Identities=18% Similarity=0.163 Sum_probs=87.4
Q ss_pred chhhHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHHHH--------HHHHhhhhc
Q 007698 104 KEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEEL--------VDCLGTIAQ 175 (592)
Q Consensus 104 ~~vfLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL--------~~~L~tIa~ 175 (592)
+...++|||.||+|+... .....|.|.++.+ +.|+|+|||.||+.++. .-.|..+-.
T Consensus 36 l~~lv~ElvdNsiDea~~--------------g~~~~I~V~i~~~-g~i~V~DnGrGIp~~~~~~~~~~~~e~i~t~lha 100 (220)
T 4duh_A 36 LHHMVFEVVDNAIDEALA--------------GHCKEIIVTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHA 100 (220)
T ss_dssp HHHHHHHHHHHHHHHHHH--------------SCCCEEEEEECTT-SCEEEEECSSCCCCSEETTTTEEHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHHHhc--------------CCCCEEEEEEeCC-CcEEEEECCcCcccccccccCcchhhheeeeccc
Confidence 467899999999999532 1234577777654 58999999999999863 222333322
Q ss_pred ccchhHHHHhhhcccCCCCCcccccccchhhhhhccccEEEEEEecCCCCceEEEEEecCCCceEEeecCCCCccCCCCc
Q 007698 176 SGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSSYVIREETDPEKLLKRGT 255 (592)
Q Consensus 176 Sgt~~f~~~l~~~~~~~~~~~~IGqFGIGf~S~F~VadkV~V~Sr~~~~~~~~~W~s~~~~~~y~I~~~~~~~~~~~~GT 255 (592)
+|+ | .. ..-...-|..|+|..++-.++++++|++++.+ ..|..+...|.....+.... ...++||
T Consensus 101 g~K--f----d~----~~yk~SgGlhGvG~svvNAlS~~l~v~v~r~g--~~~~~~f~~G~~~~~l~~~g---~~~~~GT 165 (220)
T 4duh_A 101 GGK--F----DD----NSYKVSGGLHGVGVSVVNALSQKLELVIQREG--KIHRQIYEHGVPQAPLAVTG---ETEKTGT 165 (220)
T ss_dssp SSC--C----CT----TC--------CCCHHHHHHTEEEEEEEEEETT--EEEEEEEETTEESSSCEEEE---ECSCCEE
T ss_pred CCC--c----CC----CccccccCccceecchhcccccceEEEEEECC--EEEEEEecCCcCcCCceecc---ccCCCCc
Confidence 222 2 11 11224679999999999999999999998854 33433333221100111111 1146899
Q ss_pred EEEEEeecCCccCC-----CchhHHHHHHHHhh
Q 007698 256 QITLYLKEDDKYEF-----SEPTRIQGLVKNYS 283 (592)
Q Consensus 256 ~I~L~Lk~~~~~e~-----le~~~i~~lvk~ys 283 (592)
+|+... +.. .| .+...|.+.++.++
T Consensus 166 ~V~F~P--d~~-~F~~~~~~~~~~l~~rlrelA 195 (220)
T 4duh_A 166 MVRFWP--SLE-TFTNVTEFEYEILAKRLRELS 195 (220)
T ss_dssp EEEEEE--CTT-TCCSSCSCCHHHHHHHHHHHH
T ss_pred EEEEEE--CHH-HhCCcccCCHHHHHHHHHHHH
Confidence 999873 332 22 35578889999998
No 35
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=98.84 E-value=1.4e-08 Score=108.86 Aligned_cols=151 Identities=19% Similarity=0.149 Sum_probs=93.0
Q ss_pred hhHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHHH--------HHHHHhhhhccc
Q 007698 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEE--------LVDCLGTIAQSG 177 (592)
Q Consensus 106 vfLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~ee--------L~~~L~tIa~Sg 177 (592)
..+.|||.||+||.... .....|.|.++.+++.|+|+|||.||+.++ +.-.|...-.+|
T Consensus 55 ~lv~EivdNsiDe~~~~-------------g~~~~I~V~i~~~~~~I~V~DnGrGIPv~~h~~~~~~~~e~v~t~lhags 121 (400)
T 1zxm_A 55 KIFDEILVNAADNKQRD-------------PKMSCIRVTIDPENNLISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTSS 121 (400)
T ss_dssp HHHHHHHHHHHHHHHHC-------------TTCCEEEEEEETTTTEEEEEEESSCCCCSEETTTTEEHHHHHHHSSSEES
T ss_pred HHHHHHHhhHHhHHhhc-------------CCCceEEEEEECCCCEEEEEECCCcccCccccccCccchhheeeeecccC
Confidence 37899999999995211 123457777766557999999999999887 444555332232
Q ss_pred chhHHHHhhhcccCCCCCcccccccchhhhhhccccEEEEEEecCCCCceEEEEEecCCCceEEeecCCCCccCCCCcEE
Q 007698 178 TSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSSYVIREETDPEKLLKRGTQI 257 (592)
Q Consensus 178 t~~f~~~l~~~~~~~~~~~~IGqFGIGf~S~F~VadkV~V~Sr~~~~~~~~~W~s~~~~~~y~I~~~~~~~~~~~~GT~I 257 (592)
+ | .. ..-...-|..|+|..++-.++.+++|+++...+...|...-..|.......+... ...++||+|
T Consensus 122 K--f----~~----~~ykvSgGlhGvGlsvVnAlS~~l~v~v~~~~~g~~~~~~~~~G~~~~~~~~ig~--~~~~~GT~V 189 (400)
T 1zxm_A 122 N--Y----DD----DEKKVTGGRNGYGAKLCNIFSTKFTVETASREYKKMFKQTWMDNMGRAGEMELKP--FNGEDYTCI 189 (400)
T ss_dssp C--C----CG----GGCCCCSCCSSCHHHHHHHTEEEEEEEEEETTTTEEEEEEEETTTTEECCCEEEE--CCSCCEEEE
T ss_pred C--C----CC----CcccccCCccccceeeeEEeccceEEEEecCCCCcEEEEEEccCccccCcceecc--CCCCCccEE
Confidence 2 2 11 0112367999999999999999999999874444555444433211111111110 013589999
Q ss_pred EEEeecCC---ccCCCchhH---HHHHHHHhh
Q 007698 258 TLYLKEDD---KYEFSEPTR---IQGLVKNYS 283 (592)
Q Consensus 258 ~L~Lk~~~---~~e~le~~~---i~~lvk~ys 283 (592)
++...... . +| +.+. |.+.++.++
T Consensus 190 ~F~Pd~~iF~~~-ef-~~~~~~~l~~rlrelA 219 (400)
T 1zxm_A 190 TFQPDLSKFKMQ-SL-DKDIVALMVRRAYDIA 219 (400)
T ss_dssp EEEECGGGGTCS-SC-CHHHHHHHHHHHHHHH
T ss_pred EEEEChHHhCce-ee-cHHHHHHHHHHHHHHH
Confidence 99843321 1 22 3344 667888887
No 36
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=98.81 E-value=3.8e-09 Score=118.88 Aligned_cols=151 Identities=22% Similarity=0.295 Sum_probs=95.6
Q ss_pred hhhHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCC---CcEEEEEeCCCCCCHHHHHHHHhhhhcccchhH
Q 007698 105 EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE---NGTITITDTGIGMTKEELVDCLGTIAQSGTSKF 181 (592)
Q Consensus 105 ~vfLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~---~~~L~I~DNGiGMt~eeL~~~L~tIa~Sgt~~f 181 (592)
..+|+|||+||+||... +.....|.|.+..+ ...|+|+|||.||+.+++...+..+-.++ .|
T Consensus 39 ~~Vl~ELV~NAIDa~~~-------------~g~~~~I~V~i~~~~~~~~~I~V~DnG~GIp~e~l~~iF~~~~ats--kf 103 (621)
T 2q2e_B 39 ITTVKEAVDNALDACEE-------------AGILPDILVQVERTGPDYVTVIIEDNGPGIVREQIPKVFAKLLYGS--RF 103 (621)
T ss_dssp HHHHHHHHHHHHHHHTT-------------TSCSCEEEECCEEETTTEEEEEEECCSCCCCGGGHHHHHSCCCCC----C
T ss_pred HHHHHHHHHHHHHHHhh-------------cCCCcEEEEEEEECCCcEEEEEEEECCCCCCHHHHHHHhhhhccCC--cc
Confidence 34789999999999631 01112455544332 25799999999999999988765553221 11
Q ss_pred HHHhhhcccCCCCCcccccccchhhhhhccccE-----EEEEEecCCCCceEEEEE----ecCCCceE-EeecCCCCccC
Q 007698 182 LKALKENNDLGADNGLIGQFGVGFYSAFLVAQK-----VVVSTKSPRSDKQYVWEA----EADSSSYV-IREETDPEKLL 251 (592)
Q Consensus 182 ~~~l~~~~~~~~~~~~IGqFGIGf~S~F~Vadk-----V~V~Sr~~~~~~~~~W~s----~~~~~~y~-I~~~~~~~~~~ 251 (592)
. ......|..|+|+.++..+++. ++|.|+..+...++.+.. ..+.+... ....+ ...
T Consensus 104 ----~------~~~~s~Gg~GlGLsiv~~ls~~~gG~~I~V~S~~~gg~~g~~~~~~lp~~~g~~~~~~~~~~~---~~~ 170 (621)
T 2q2e_B 104 ----H------ALKQSRGQQGIGISAAVLYAQMTAGRHTKILSKTSPTAPAHYYELMINTSTNEPDILVDEVRD---WFR 170 (621)
T ss_dssp ----C------CCC-CCSSSSHHHHHHHHHHHHHTCCCCEEEEECSSSSCEEEEECCCCSSSCSCCCCCEEECC---CSC
T ss_pred ----c------cccccCCCceechhhhhHHHHHhCCCceeEEeeccCCccceEEEEecchhccccccccccccc---CCC
Confidence 1 0112348999999999998887 599998765446676654 22222221 11111 124
Q ss_pred CCCcEEEEEeecCCccCCCc--hhHHHHHHHHhhccCccc
Q 007698 252 KRGTQITLYLKEDDKYEFSE--PTRIQGLVKNYSQFVSFP 289 (592)
Q Consensus 252 ~~GT~I~L~Lk~~~~~e~le--~~~i~~lvk~ys~fl~~P 289 (592)
++||+|++.++.+ +.+ ...|.+.+++|+ +..|
T Consensus 171 ~~GT~V~~~f~~~----~~~~~~~~I~~~L~~lA--llnp 204 (621)
T 2q2e_B 171 PHGTQIELEMRAA----YVKGRRQSIYEYLKATA--IVNP 204 (621)
T ss_dssp SSCCCEEEECSCC----CCCCSSSSSHHHHHHHH--HHCC
T ss_pred CCCCEEEEEecCc----cchHHHHHHHHHHHHHH--hhCC
Confidence 6899999998743 333 267888899988 4444
No 37
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=98.78 E-value=6.8e-08 Score=96.11 Aligned_cols=148 Identities=19% Similarity=0.172 Sum_probs=89.3
Q ss_pred hhhHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHHH-------HHHHHhhhhccc
Q 007698 105 EVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEE-------LVDCLGTIAQSG 177 (592)
Q Consensus 105 ~vfLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~ee-------L~~~L~tIa~Sg 177 (592)
...++|+|.||+|+..+ .....|.|.++.+ +.|+|+|||.||+.++ +.-.|+..-.+|
T Consensus 42 ~~~v~Eiv~NaiD~~~~--------------g~~~~I~V~i~~~-g~i~V~DnG~GIp~~~h~~~~~~~e~v~t~lhag~ 106 (226)
T 4emv_A 42 HHLVWEIVDNAVDEALS--------------GFGDRIDVTINKD-GSLTVQDHGRGMPTGMHAMGIPTVEVIFTILHAGG 106 (226)
T ss_dssp HHHHHHHHHHHHHHHHT--------------TCCSEEEEEECTT-SCEEEEECSSCCCCSBCGGGCBHHHHHHHCBC---
T ss_pred HHHHHHHHHHHHHHHhc--------------CCCcEEEEEEeCC-CeEEEEEcCCCccccccccCceehheeEEeecccC
Confidence 45789999999999521 1234677777664 5899999999999988 443444333333
Q ss_pred chhHHHHhhhcccCCCCCcccccccchhhhhhccccEEEEEEecCCCCceEEEEEecC-C--Cce-EEeecCCCCccCCC
Q 007698 178 TSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEAD-S--SSY-VIREETDPEKLLKR 253 (592)
Q Consensus 178 t~~f~~~l~~~~~~~~~~~~IGqFGIGf~S~F~VadkV~V~Sr~~~~~~~~~W~s~~~-~--~~y-~I~~~~~~~~~~~~ 253 (592)
+ |-. ..-...-|..|+|..++-.++++++|++++.+ ..|..+-..| . ... .+.+.. ....
T Consensus 107 K--fd~--------~~yk~SgGlhGvG~svvNALS~~l~v~v~r~g--~~~~q~f~~Gg~~~~~l~~ig~~~----~~~~ 170 (226)
T 4emv_A 107 K--FGQ--------GGYKTSGGLHGVGSSVVNALSSWLEVEITRDG--AVYKQRFENGGKPVTTLKKIGTAL----KSKT 170 (226)
T ss_dssp ---------------------CGGGCCHHHHHHTEEEEEEEEEETT--EEEEEEEETTTEESSCSEEEEECC----TTCC
T ss_pred c--cCc--------cceEeccccccccchhhhhcccceEEEEEeCC--cEEEEEECCCCEEcCCceEecccC----CCCC
Confidence 2 311 11234679999999999999999999999854 3443333322 1 011 122221 1368
Q ss_pred CcEEEEEeecCCc-cCCCchhHHHHHHHHhh
Q 007698 254 GTQITLYLKEDDK-YEFSEPTRIQGLVKNYS 283 (592)
Q Consensus 254 GT~I~L~Lk~~~~-~e~le~~~i~~lvk~ys 283 (592)
||+|+......-- ..-++...|.+.++.++
T Consensus 171 GT~V~F~PD~~iF~~~~~~~~~l~~rlrelA 201 (226)
T 4emv_A 171 GTKVTFMPDATIFSTTDFKYNTISERLNESA 201 (226)
T ss_dssp EEEEEEEECTTTCSCCCCCHHHHHHHHHHHH
T ss_pred CeEEEEEECHHHcCCCCcCHHHHHHHHHHHh
Confidence 9999987332210 01145678899999998
No 38
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=98.49 E-value=1.1e-06 Score=94.40 Aligned_cols=149 Identities=16% Similarity=0.174 Sum_probs=83.3
Q ss_pred chhhHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHHHH-------HHH-Hhhhhc
Q 007698 104 KEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEEL-------VDC-LGTIAQ 175 (592)
Q Consensus 104 ~~vfLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL-------~~~-L~tIa~ 175 (592)
+...+.|+|.||+|+.-+ ...-.|.|.++.+ +.|+|+|||.||+.+.. .+. |..+-.
T Consensus 51 ~~hlv~EivdNsiDea~a--------------g~~~~I~V~i~~d-gsI~V~DnGrGIPv~~h~~~~~~~~e~i~t~lha 115 (408)
T 3lnu_A 51 PNHLAQEVIDNSVDEALA--------------GHAKQIEVTLYKD-GSCEVSDDGRGMPVDIHPEEKIPGVELILTRLHA 115 (408)
T ss_dssp THHHHHHHHHHHHHHHHT--------------TSCCEEEEEECTT-SCEEEEECSSCCCCSBCTTTCSBHHHHHHHCC--
T ss_pred cchhhHHHHHHHHHHhhc--------------CCCceEEEEEeCC-CeEEEEEcCCCCCcccccccCCcchheEEEeccc
Confidence 467899999999999421 1234577777654 58999999999998862 223 333333
Q ss_pred ccchhHHHHhhhcccCCCCCcccccccchhhhhhccccEEEEEEecCCCCceEEEEEecCCC--ceE-EeecCCCCccCC
Q 007698 176 SGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSS--SYV-IREETDPEKLLK 252 (592)
Q Consensus 176 Sgt~~f~~~l~~~~~~~~~~~~IGqFGIGf~S~F~VadkV~V~Sr~~~~~~~~~W~s~~~~~--~y~-I~~~~~~~~~~~ 252 (592)
+|+ |-. ..-...-|.-|+|..++=.++.+++|++++.+ ..|..+-..|.. ... +.+.. ...
T Consensus 116 ggK--fd~--------~~ykvSgGlhGvG~svVNALS~~l~v~v~rdG--k~~~q~f~~G~~~~~l~~ig~~~----~~~ 179 (408)
T 3lnu_A 116 GGK--FNN--------RNYTFSGGLHGVGVSVVNALSTKVELFIKREG--SEHRMEFRDGNAASKLEVVGTVG----KKN 179 (408)
T ss_dssp ----------------------------CHHHHHHTEEEEEEEEEETT--EEEEEEEETTEECSCCEEEEECC----TTC
T ss_pred CCC--cCC--------CceeecCCccccccceehhccCeEEEEEEECC--EEEEEEECCCEECCCceEeccCc----CCC
Confidence 332 311 11124579999999999999999999999754 334333332210 111 22221 136
Q ss_pred CCcEEEEEeecCCc-cCCCchhHHHHHHHHhh
Q 007698 253 RGTQITLYLKEDDK-YEFSEPTRIQGLVKNYS 283 (592)
Q Consensus 253 ~GT~I~L~Lk~~~~-~e~le~~~i~~lvk~ys 283 (592)
.||+|+......-- ..-++...|.+.+++++
T Consensus 180 ~GT~V~F~PD~~iF~~~~f~~~~l~~rlrelA 211 (408)
T 3lnu_A 180 TGTRLRFWADPKYFDTPKFNVRALRHLLRAKA 211 (408)
T ss_dssp CEEEEEEEECGGGSSCSCCCHHHHHHHHHHHH
T ss_pred CCcEEEEEECHHHhCCCCcCHHHHHHHHHHHH
Confidence 89999987332210 01145678888899887
No 39
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=98.38 E-value=1.2e-06 Score=85.30 Aligned_cols=132 Identities=17% Similarity=0.205 Sum_probs=79.6
Q ss_pred chhhHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHHHHHHHHhhhhcccchhHHH
Q 007698 104 KEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLK 183 (592)
Q Consensus 104 ~~vfLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~L~tIa~Sgt~~f~~ 183 (592)
+...++|||.||+|+--+ .....|.|.++.+ +.|+|.|||.||+.+ .+++|+....
T Consensus 32 l~~~v~Elv~NsiD~~~a--------------g~~~~I~V~i~~~-g~i~V~DnG~Gip~~-------~h~~~~~~~~-- 87 (198)
T 3ttz_A 32 LHHLVWEIVDNSIDEALA--------------GYANQIEVVIEKD-NWIKVTDNGRGIPVD-------IQEKMGRPAV-- 87 (198)
T ss_dssp HHHHHHHHHHHHHHHHHT--------------TSCCEEEEEEEGG-GEEEEEECSSCCCCS-------BCTTTSSBHH--
T ss_pred hHHHHHHHHHHHHhHHhc--------------CCCcEEEEEEeCC-CeEEEEECCCCcccc-------ccCcCCCccc--
Confidence 467899999999998421 1134566666554 499999999999986 4555543211
Q ss_pred HhhhcccCCCCCcccccccchhhhhhccccEEEEEEecCCCCceEEEEEecCCCceEEeecCCCCccCCCCcEEEEEeec
Q 007698 184 ALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSSYVIREETDPEKLLKRGTQITLYLKE 263 (592)
Q Consensus 184 ~l~~~~~~~~~~~~IGqFGIGf~S~F~VadkV~V~Sr~~~~~~~~~W~s~~~~~~y~I~~~~~~~~~~~~GT~I~L~Lk~ 263 (592)
..+ |+ ..++=.++.+++|+|++.+ ..|..+...|.....+.... ...+.||+|++. +
T Consensus 88 ------------e~i--~t--~SvVNALS~~l~v~v~r~g--~~~~~~f~~G~~~~~l~~i~---~~~~~GT~V~F~--P 144 (198)
T 3ttz_A 88 ------------EVI--LT--SSVVNALSQDLEVYVHRNE--TIYHQAYKKGVPQFDLKEVG---TTDKTGTVIRFK--A 144 (198)
T ss_dssp ------------HHH--HH--TCHHHHTEEEEEEEEEETT--EEEEEEEETTEESSCCEEEE---ECSCCEEEEEEE--E
T ss_pred ------------ccc--ce--eEehhhhcCeEEEEEEECC--cEEEEEEeCCEECCCceecc---CCCCCCcEEEEE--E
Confidence 011 22 3344556789999998854 34443333321101111111 113689999987 3
Q ss_pred CCccCC-----CchhHHHHHHHHhh
Q 007698 264 DDKYEF-----SEPTRIQGLVKNYS 283 (592)
Q Consensus 264 ~~~~e~-----le~~~i~~lvk~ys 283 (592)
+.. -| .+...|.+.++.++
T Consensus 145 d~~-iF~~~~~~~~~~l~~rlrelA 168 (198)
T 3ttz_A 145 DGE-IFTETTVYNYETLQQRIRELA 168 (198)
T ss_dssp CTT-TCCSCCCCCHHHHHHHHHHHH
T ss_pred CHH-HhccCCccCHHHHHHHHHHHh
Confidence 333 33 45678999999998
No 40
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=98.16 E-value=1.2e-05 Score=86.71 Aligned_cols=130 Identities=18% Similarity=0.178 Sum_probs=80.8
Q ss_pred hHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHHHHHH--------HHhhhhcccc
Q 007698 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVD--------CLGTIAQSGT 178 (592)
Q Consensus 107 fLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~--------~L~tIa~Sgt 178 (592)
.+.|+|.||+|+.... ...-.|.|.++.+++.|+|+|||.||+.+.... .|+.+-.+|+
T Consensus 68 lv~EivdNaiDe~~~~-------------g~~~~I~V~i~~d~~sI~V~DnGrGIPv~~h~~~g~~~~E~v~t~LhaGgK 134 (418)
T 1pvg_A 68 IFDEILVNAADNKVRD-------------PSMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSN 134 (418)
T ss_dssp HHHHHHHHHHHHHHHC-------------TTCCEEEEEEETTTTEEEEEEESSCCCCSBCTTTCSBHHHHHHHSSSEESC
T ss_pred HHHHHHhCHHHHHHhc-------------CCCCEEEEEEECCCCEEEEEECCCcccCcccccCCcccceEEEEEEecccc
Confidence 7899999999996321 123457777777667999999999999775221 2444433432
Q ss_pred hhHHHHhhhcccCCCCCcccccccchhhhhhccccEEEEEEecCCCCceEEEEEecCCCc---eEEeecCCCCccCCCCc
Q 007698 179 SKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSS---YVIREETDPEKLLKRGT 255 (592)
Q Consensus 179 ~~f~~~l~~~~~~~~~~~~IGqFGIGf~S~F~VadkV~V~Sr~~~~~~~~~W~s~~~~~~---y~I~~~~~~~~~~~~GT 255 (592)
| . .+.-...-|.-|+|...+=.++.+++|+++...+...|..+-..|.+. -.+.... ....||
T Consensus 135 --f----d----~~~ykvSGGLhGVG~SvVNALS~~l~V~v~r~rdGk~y~q~f~~G~~~~~~p~i~~~~----~~~tGT 200 (418)
T 1pvg_A 135 --Y----D----DDEKKVTGGRNGYGAKLCNIFSTEFILETADLNVGQKYVQKWENNMSICHPPKITSYK----KGPSYT 200 (418)
T ss_dssp --C----C----TTSCCCCSCCSSCHHHHHHHTEEEEEEEEEETTTTEEEEEEEETTTTEECCCEEEECC----SSCCEE
T ss_pred --c----C----CCceeccCCccceeeeeeeeccceEEEEEEECCCCcEEEEEEEcCCCccCCCeecccC----CCCCce
Confidence 2 1 111223579999999999999999999998532334443332222111 1233221 135899
Q ss_pred EEEEEeec
Q 007698 256 QITLYLKE 263 (592)
Q Consensus 256 ~I~L~Lk~ 263 (592)
+|+.....
T Consensus 201 ~V~F~PD~ 208 (418)
T 1pvg_A 201 KVTFKPDL 208 (418)
T ss_dssp EEEEEECG
T ss_pred EEEEEECh
Confidence 99987544
No 41
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=97.43 E-value=0.00018 Score=70.40 Aligned_cols=74 Identities=18% Similarity=0.197 Sum_probs=48.8
Q ss_pred hhHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHHHHHHHHhhhhcccchhHHHHh
Q 007698 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKAL 185 (592)
Q Consensus 106 vfLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~L~tIa~Sgt~~f~~~l 185 (592)
.++.+||.||+++.. ..+.+.|.+..+.+.-.|+|.|||.||+.+++...+... .+
T Consensus 158 ~il~nLl~NA~~~~~--------------~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~~-~~--------- 213 (268)
T 4ew8_A 158 QTLDHLVENALRQTP--------------PGGRVTLSARRALGEVRLDVSDTGRGVPFHVQAHIFDRF-VG--------- 213 (268)
T ss_dssp HHHHHHHHHHHHHSC--------------TTCEEEEEEEECSSEEEEEEEESSCCCCHHHHTTTTSTT-CC---------
T ss_pred HHHHHHHHHHHHhCC--------------CCCEEEEEEEecCCEEEEEEEcCCCCCCHHHHHHHHHHH-hc---------
Confidence 367899999998831 123455666555556689999999999998875433211 11
Q ss_pred hhcccCCCCCcccccccchhhhhhcccc
Q 007698 186 KENNDLGADNGLIGQFGVGFYSAFLVAQ 213 (592)
Q Consensus 186 ~~~~~~~~~~~~IGqFGIGf~S~F~Vad 213 (592)
..-+..|+|++.+-.+++
T Consensus 214 ----------~~~~g~GlGL~i~~~~~~ 231 (268)
T 4ew8_A 214 ----------RDRGGPGLGLALVKALVE 231 (268)
T ss_dssp ----------CSSCCCTTHHHHHHHHHH
T ss_pred ----------CCCCCCcccHHHHHHHHH
Confidence 112457999987766654
No 42
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=97.35 E-value=0.00021 Score=64.02 Aligned_cols=75 Identities=19% Similarity=0.176 Sum_probs=45.9
Q ss_pred hHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHHHHHHHHhhhhcccchhHHHHhh
Q 007698 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKALK 186 (592)
Q Consensus 107 fLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~L~tIa~Sgt~~f~~~l~ 186 (592)
++.+||.||+.+. ..+.+.|.+..+.+.-.|+|.|||.||+.+++...+...-++.+
T Consensus 50 il~nLl~NA~~~~---------------~~~~I~i~~~~~~~~~~i~v~D~G~gi~~~~~~~if~~f~~~~~-------- 106 (150)
T 1ysr_A 50 AVDNAIANAVKHG---------------GATLVQLSAVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRGST-------- 106 (150)
T ss_dssp HHHHHHHHHHHTT---------------CCSEEEEEEEEETTEEEEEEEESSSCCCGGGHHHHHTSCC------------
T ss_pred HHHHHHHHHHhcC---------------CCcEEEEEEEecCCEEEEEEEECCCCCCHHHHHHHhcccccCCC--------
Confidence 5679999999883 11244555555555567999999999999998766543322110
Q ss_pred hcccCCCCCcccccccchhhhhhcccc
Q 007698 187 ENNDLGADNGLIGQFGVGFYSAFLVAQ 213 (592)
Q Consensus 187 ~~~~~~~~~~~IGqFGIGf~S~F~Vad 213 (592)
..-+..|+|++.+-.+++
T Consensus 107 ---------~~~~g~GlGL~i~~~~~~ 124 (150)
T 1ysr_A 107 ---------ASHSGSGLGLALVAQQAQ 124 (150)
T ss_dssp ----------------CCCHHHHHHHH
T ss_pred ---------CCCCCCCcCHHHHHHHHH
Confidence 113457999988777654
No 43
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=97.34 E-value=0.00027 Score=63.42 Aligned_cols=84 Identities=18% Similarity=0.251 Sum_probs=50.6
Q ss_pred hhHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHHHHHHHHhhhhcccchhHHHHh
Q 007698 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKAL 185 (592)
Q Consensus 106 vfLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~L~tIa~Sgt~~f~~~l 185 (592)
.++.|||.||+.+... . ...+.+.|.+..+.+.-.|+|.|||.||+ ++...+...-++
T Consensus 42 ~il~~l~~Nai~h~~~-------~----~~~~~I~i~~~~~~~~~~i~V~D~G~g~~--~~~~~~~~~~~~--------- 99 (145)
T 1th8_A 42 TVVSEAVTNAIIHGYN-------N----DPNGIVSISVIIEDGVVHLTVRDEGVGIP--DIEEARQPLFTT--------- 99 (145)
T ss_dssp HHHHHHHHHHHHTTST-------T----CTTSEEEEEEEEETTEEEEEEEECSSCCS--CHHHHTCCC------------
T ss_pred HHHHHHHHHHHHHhcC-------C----CCCCEEEEEEEEeCCEEEEEEEECCCCcC--hHHHhhcccccC---------
Confidence 4688999999987310 0 01244555655555556899999999999 554333221110
Q ss_pred hhcccCCCCCcccccccchhhhhhccccEEEEEEe
Q 007698 186 KENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTK 220 (592)
Q Consensus 186 ~~~~~~~~~~~~IGqFGIGf~S~F~VadkV~V~Sr 220 (592)
. ...+..|+|++-+-.+++++.+.+.
T Consensus 100 -------~--~~~~~~GlGL~iv~~~~~~i~~~~~ 125 (145)
T 1th8_A 100 -------K--PELERSGMGFTIMENFMDEVIVESE 125 (145)
T ss_dssp -------------CCCSCHHHHHHHHSSEEEEEEE
T ss_pred -------C--CCCCCCcchHHHHHHHHheEEEEeC
Confidence 0 0124579999988877775555443
No 44
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=97.26 E-value=0.00049 Score=72.61 Aligned_cols=91 Identities=20% Similarity=0.207 Sum_probs=51.8
Q ss_pred hHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHHHHHHHHhhhhcccchhHHHHhh
Q 007698 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKALK 186 (592)
Q Consensus 107 fLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~L~tIa~Sgt~~f~~~l~ 186 (592)
+|.+||.||+.|........ ...+.+.|.+..+.+.-.|+|.|||.||+.+++...+...-+..... .
T Consensus 235 il~NLl~NAik~~~~~~~~~-------~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~---~-- 302 (394)
T 2btz_A 235 MLFELFKNAMRATVESHESS-------LILPPIKVMVALGEEDLSIKMSDRGGGVPLRKIERLFSYMYSTAPTP---Q-- 302 (394)
T ss_dssp HHHHHHHHHHHHHHHTTTTC-------SCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHHHHTCTTTTCCC--------
T ss_pred HHHHHHHHHHHHhhhccccC-------CCCCCEEEEEEeCCCEEEEEEEeCCCCCCHHHHHHHhcccccCCCCC---C--
Confidence 57799999999974311000 01234666666555556899999999999999986654432221100 0
Q ss_pred hcccCCCCCcccccccchhhhhhcccc
Q 007698 187 ENNDLGADNGLIGQFGVGFYSAFLVAQ 213 (592)
Q Consensus 187 ~~~~~~~~~~~IGqFGIGf~S~F~Vad 213 (592)
........+.+|+|++-|-.+++
T Consensus 303 ----~~~~~~~~~G~GLGL~i~~~i~~ 325 (394)
T 2btz_A 303 ----PGTGGTPLAGFGYGLPISRLYAK 325 (394)
T ss_dssp ---------------CCHHHHHHHHHH
T ss_pred ----cccCCCCCCCccCCHHHHHHHHH
Confidence 00012346779999988877764
No 45
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=97.23 E-value=0.00036 Score=62.35 Aligned_cols=73 Identities=21% Similarity=0.186 Sum_probs=48.3
Q ss_pred hHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHHHHHHHHhhhhcccchhHHHHhh
Q 007698 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKALK 186 (592)
Q Consensus 107 fLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~L~tIa~Sgt~~f~~~l~ 186 (592)
++.+||.||+.+.. ..+.|.+..+.+.-.|+|.|||.||+.+++...+...-+.
T Consensus 48 il~nLl~NAi~~~~----------------~~i~i~~~~~~~~~~i~i~D~G~gi~~~~~~~~f~~~~~~---------- 101 (152)
T 1id0_A 48 VMGNVLDNACKYCL----------------EFVEISARQTDEHLYIVVEDDGPGIPLSKREVIFDRGQRV---------- 101 (152)
T ss_dssp HHHHHHHHHHHHCS----------------SEEEEEEEECSSCEEEEEEESSSCCCGGGTTGGGSCCCCT----------
T ss_pred HHHHHHHHHHHhCc----------------CeEEEEEEecCCEEEEEEEeCCCCcCHHHHHHHhccceec----------
Confidence 56799999999831 2345555555556689999999999999876433221111
Q ss_pred hcccCCCCCcccccccchhhhhhcccc
Q 007698 187 ENNDLGADNGLIGQFGVGFYSAFLVAQ 213 (592)
Q Consensus 187 ~~~~~~~~~~~IGqFGIGf~S~F~Vad 213 (592)
+ ..-+..|+|++.+-.+++
T Consensus 102 -------~-~~~~g~GlGL~i~~~~~~ 120 (152)
T 1id0_A 102 -------D-TLRPGQGVGLAVAREITE 120 (152)
T ss_dssp -------T-CCCTTCCSCHHHHHHHHH
T ss_pred -------c-CCCCCcccCHHHHHHHHH
Confidence 0 112568999987776644
No 46
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=97.22 E-value=0.0014 Score=78.73 Aligned_cols=147 Identities=18% Similarity=0.174 Sum_probs=82.7
Q ss_pred hHHhhhhcHHh-HHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHHH--------HHHHHhhhhccc
Q 007698 107 FLRELVSNASD-ALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEE--------LVDCLGTIAQSG 177 (592)
Q Consensus 107 fLRELIqNA~D-A~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~ee--------L~~~L~tIa~Sg 177 (592)
.+.|.|.||+| |+. + ..--.|.|.++.+++.|+|+|||.||+-+. +.-.|+++-.+|
T Consensus 63 l~~EildNsiDea~a--------g------~~~~~I~V~i~~~d~sisV~DnGRGIPvd~h~~~~~~~~Evv~t~LhAGg 128 (1177)
T 4gfh_A 63 IFDEILVNAADNKVR--------D------PSMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSS 128 (1177)
T ss_dssp HHHHHHHHHHHHHHH--------C------TTCCEEEEEEETTTTEEEEEECSSCCCCSBCTTTCSBHHHHHHHSSSEES
T ss_pred EeeEEEEChHhHHhh--------C------CCCCeEEEEEECCCCEEEEEecCCcccccccCCCCCEeeeeecccccccc
Confidence 56899999999 431 1 011357777777788999999999998541 111234333343
Q ss_pred chhHHHHhhhcccCCCCCcccccccchhhhhhccccEEEEEEecCCCCceEEEEEecCCCc---eEEeecCCCCccCCCC
Q 007698 178 TSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSS---YVIREETDPEKLLKRG 254 (592)
Q Consensus 178 t~~f~~~l~~~~~~~~~~~~IGqFGIGf~S~F~VadkV~V~Sr~~~~~~~~~W~s~~~~~~---y~I~~~~~~~~~~~~G 254 (592)
+ | . .+.-...-|.-|||..-+=.++.++.|.+.....+..|.-.-..|... -.|.... ..+.|
T Consensus 129 K--F----d----~~~ykvSGGLHGVG~svVNALS~~~~vev~~~r~Gk~y~q~f~~g~~~~~~~~i~~~~----~~~tG 194 (1177)
T 4gfh_A 129 N--Y----D----DDEKKVTGGRNGYGAKLCNIFSTEFILETADLNVGQKYVQKWENNMSICHPPKITSYK----KGPSY 194 (1177)
T ss_dssp C--C----C----CSSCCCCSCCSSCHHHHHHHTEEEEEEEEEETTTTEEEEEEEETTTTEECCCEEEECC----SSCCC
T ss_pred C--c----C----CCCCeEeccCCChhhhHHhhcCCceEEEEEEEcCCEEEEEEEECCcccCCCCeeecCC----CCCCc
Confidence 2 2 1 111223569999999877778888777765333334443232222111 1233222 13579
Q ss_pred cEEEEEeecC---CccCCCchhHHHHHHHHhh
Q 007698 255 TQITLYLKED---DKYEFSEPTRIQGLVKNYS 283 (592)
Q Consensus 255 T~I~L~Lk~~---~~~e~le~~~i~~lvk~ys 283 (592)
|+|+...... .. + ++.+.+....++.+
T Consensus 195 T~V~F~PD~~iF~~~-~-~~~d~l~~~~r~~~ 224 (1177)
T 4gfh_A 195 TKVTFKPDLTRFGMK-E-LDNDILGVMRRRVY 224 (1177)
T ss_dssp EEEEEEECHHHHTCS-S-CCHHHHHHHHHHHH
T ss_pred eEEEEEeCHHhcCCc-E-eCHHHHHHHHHHHH
Confidence 9998774331 11 2 34455555555543
No 47
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=97.19 E-value=0.00028 Score=66.67 Aligned_cols=72 Identities=19% Similarity=0.256 Sum_probs=33.1
Q ss_pred hHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHHHHHHHHhhhhcccchhHHHHhh
Q 007698 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKALK 186 (592)
Q Consensus 107 fLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~L~tIa~Sgt~~f~~~l~ 186 (592)
++.+||+||+.+.. ....|.|...... |+|.|||.||+.+++...+...-++
T Consensus 121 il~nLl~NAi~~~~----------------~~~~i~i~~~~~~--i~V~D~G~Gi~~~~~~~if~~f~~~---------- 172 (222)
T 3jz3_A 121 LVRNLLDNAVRYSP----------------QGSVVDVTLNADN--FIVRDNGPGVTPEALARIGERFYRP---------- 172 (222)
T ss_dssp HHHHHHHHHHHTCC----------------TTCEEEEEECSSE--EEEECSCC---------------------------
T ss_pred HHHHHHHHHHHcCC----------------CCCeEEEEEccCe--EEEEECCCCCCHHHHHHHHhhhccC----------
Confidence 67899999998831 2234666654433 9999999999999887554332211
Q ss_pred hcccCCCCCcccccccchhhhhhcccc
Q 007698 187 ENNDLGADNGLIGQFGVGFYSAFLVAQ 213 (592)
Q Consensus 187 ~~~~~~~~~~~IGqFGIGf~S~F~Vad 213 (592)
.....+..|+|++-+-.+++
T Consensus 173 -------~~~~~~g~GlGL~i~~~i~~ 192 (222)
T 3jz3_A 173 -------PGQTATGSGLGLSIVQRIAK 192 (222)
T ss_dssp ----------------CTHHHHHHHHH
T ss_pred -------CCCCCCcccccHHHHHHHHH
Confidence 00123467999987776654
No 48
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=97.18 E-value=0.00059 Score=72.10 Aligned_cols=92 Identities=22% Similarity=0.208 Sum_probs=56.6
Q ss_pred hHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHHHHHHHHhhhhcccchhHHHHhh
Q 007698 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKALK 186 (592)
Q Consensus 107 fLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~L~tIa~Sgt~~f~~~l~ 186 (592)
+|.+||.||+.|........ ...+.+.|.+..+.+.-.|+|.|+|.||+.+++...+...-+..... ..
T Consensus 234 il~NLl~NAik~~~~~~~~~-------~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~if~~f~~~~~~~---~~- 302 (394)
T 2e0a_A 234 MLFELFKNAMRATVEHQENQ-------PSLTPIEVIVVLGKEDLTIKISDRGGGVPLRIIDRLFSYTYSTAPTP---VM- 302 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTTS-------SSCCCEEEEEEECSSEEEEEEEECSCCCCGGGHHHHTSTTCCSSCCC------
T ss_pred HHHHHHHHHHHHHHhccccc-------CCCCCEEEEEEeCCCEEEEEEEeCCCCcCHHHHHHHhCcCccCCCCC---Cc-
Confidence 57799999999975321100 11235666666655566899999999999999986654432221100 00
Q ss_pred hcccCCCCCcccccccchhhhhhcccc
Q 007698 187 ENNDLGADNGLIGQFGVGFYSAFLVAQ 213 (592)
Q Consensus 187 ~~~~~~~~~~~IGqFGIGf~S~F~Vad 213 (592)
........+..|+|++-|-.+++
T Consensus 303 ----~~~~~~~~~G~GLGL~i~~~i~~ 325 (394)
T 2e0a_A 303 ----DNSRNAPLAGFGYGLPISRLYAK 325 (394)
T ss_dssp --------CCCSSCSSCHHHHHHHHHH
T ss_pred ----CcCCCCCCCCcccCHHHHHHHHH
Confidence 00022346789999988877754
No 49
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=97.12 E-value=0.0007 Score=71.82 Aligned_cols=92 Identities=18% Similarity=0.190 Sum_probs=56.0
Q ss_pred hHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHHHHHHHHhhhhcccchhHHHHhh
Q 007698 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKALK 186 (592)
Q Consensus 107 fLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~L~tIa~Sgt~~f~~~l~ 186 (592)
+|.+||.||+.|.....-.. ...+.+.|.+..+.+.-.|+|.|||.||+.+++...|...-+....
T Consensus 247 il~NLl~NAik~t~~~~~~~-------~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~e~~~~if~~f~~~~~~------- 312 (407)
T 2q8g_A 247 MVFELFKNAMRATMEHHANR-------GVYPPIQVHVTLGNEDLTVKMSDRGGGVPLRKIDRLFNYMYSTAPR------- 312 (407)
T ss_dssp HHHHHHHHHHHHHHHHSTTT-------CCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHGGGGCTTTTCCCC-------
T ss_pred HHHHHHHHHHHHHhhccccC-------CCCCCEEEEEEeCCCEEEEEEEecCCCCCHHHHHHHhCccccCCCC-------
Confidence 57899999999975321000 1123566666655555689999999999999987555433221100
Q ss_pred hcccCCCCCcccccccchhhhhhcccc
Q 007698 187 ENNDLGADNGLIGQFGVGFYSAFLVAQ 213 (592)
Q Consensus 187 ~~~~~~~~~~~IGqFGIGf~S~F~Vad 213 (592)
... ........|..|+|++-|-.+++
T Consensus 313 ~~~-~~~~~~~~~G~GLGL~Ivr~i~~ 338 (407)
T 2q8g_A 313 PRV-ETSRAVPLAGFGYGLPISRLYAQ 338 (407)
T ss_dssp CCS-SCCSCCCSSCTTCHHHHHHHHHH
T ss_pred CCc-cccCCCCCCCcCCCHHHHHHHHH
Confidence 000 00122346789999988777654
No 50
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=97.10 E-value=0.00051 Score=61.09 Aligned_cols=72 Identities=17% Similarity=0.199 Sum_probs=46.5
Q ss_pred hHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHHHHHHHHhhhhcccchhHHHHhh
Q 007698 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKALK 186 (592)
Q Consensus 107 fLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~L~tIa~Sgt~~f~~~l~ 186 (592)
++.+||.||+.+.. ..+.+.|.+..+.+.-.|+|.|||.||+.+++...+....++
T Consensus 51 il~nll~NAi~~~~--------------~~~~I~i~~~~~~~~~~i~i~D~G~g~~~~~~~~~f~~~~~~---------- 106 (152)
T 3a0y_A 51 VLINLVQNAIEATG--------------ENGKIKITSEDMYTKVRVSVWNSGPPIPEELKEKIFSPFFTT---------- 106 (152)
T ss_dssp HHHHHHHHHHHHHC--------------TTCEEEEEEEECSSEEEEEEEEESCCCCGGGTTGGGSTTCCC----------
T ss_pred HHHHHHHHHHHhcC--------------CCCEEEEEEEecCCEEEEEEEeCCCCcCHHHHHhHhhhhccC----------
Confidence 45689999999851 123455555555555679999999999999876443221110
Q ss_pred hcccCCCCCcccccccchhhhhhccc
Q 007698 187 ENNDLGADNGLIGQFGVGFYSAFLVA 212 (592)
Q Consensus 187 ~~~~~~~~~~~IGqFGIGf~S~F~Va 212 (592)
.-+..|+|++.+-.++
T Consensus 107 ----------~~~g~GlGL~i~~~~~ 122 (152)
T 3a0y_A 107 ----------KTQGTGLGLSICRKII 122 (152)
T ss_dssp ----------C--CCCCSHHHHHHHH
T ss_pred ----------CCCCCCcCHHHHHHHH
Confidence 1245799998776554
No 51
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=97.07 E-value=0.00094 Score=71.27 Aligned_cols=93 Identities=19% Similarity=0.197 Sum_probs=53.1
Q ss_pred hHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHHHHHHHHhhhhcccchhHHHHhh
Q 007698 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKALK 186 (592)
Q Consensus 107 fLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~L~tIa~Sgt~~f~~~l~ 186 (592)
+|.+||.||+.|.....-.. + ...+.+.|.+..+.+.-.|+|.|||.||+++++...|...-+..... .+.
T Consensus 257 vl~NLl~NAik~~~~~~~~~---~---~~~~~I~I~~~~~~~~v~I~V~D~G~GI~~e~l~~iF~~f~~~~~~~---~~~ 327 (419)
T 1y8o_A 257 MLFELFKNSMRATVELYEDR---K---EGYPAVKTLVTLGKEDLSIKISDLGGGVPLRKIDRLFNYMYSTAPRP---SLE 327 (419)
T ss_dssp HHHHHHHHHHHHHHHHHTTC---S---SCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHGGGGCTTTC-----------
T ss_pred HHHHHHHHHHHHHHhhcccc---C---CCCCCEEEEEEeCCCEEEEEEEECCCCCCHHHHHHHhCcccccCCCC---Ccc
Confidence 57899999999975421100 0 00135666666555566899999999999999876554332211000 000
Q ss_pred hcccCCCCCcccccccchhhhhhcccc
Q 007698 187 ENNDLGADNGLIGQFGVGFYSAFLVAQ 213 (592)
Q Consensus 187 ~~~~~~~~~~~IGqFGIGf~S~F~Vad 213 (592)
.......+..|+|++-|-.+++
T Consensus 328 -----~~~~~~~~G~GLGL~I~k~iv~ 349 (419)
T 1y8o_A 328 -----PTRAAPLAGFGYGLPISRLYAR 349 (419)
T ss_dssp ----------CC--CTTHHHHHHHHHH
T ss_pred -----ccCCCCcCCeecCHHHHHHHHH
Confidence 0122346779999988777754
No 52
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=97.07 E-value=0.0003 Score=63.91 Aligned_cols=75 Identities=16% Similarity=0.253 Sum_probs=49.0
Q ss_pred hHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHHHHHHHHhhhhcccchhHHHHhh
Q 007698 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKALK 186 (592)
Q Consensus 107 fLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~L~tIa~Sgt~~f~~~l~ 186 (592)
+|.+||+||+.+. .+.+.|.+..+.+.-.|+|.|||.||+.+++...+....++
T Consensus 51 il~nll~NAik~~----------------~~~I~i~~~~~~~~~~i~i~D~G~gi~~~~~~~~f~~f~~~---------- 104 (161)
T 1bxd_A 51 AVANMVVNAARYG----------------NGWIKVSSGTEPNRAWFQVEDDGPGIAPEQRKHLFQPFVRG---------- 104 (161)
T ss_dssp HHHHHHHHHHTTC----------------CSCEEEEEEEETTEEEEEEEEESSCSCTTGGGCSSCCCCCC----------
T ss_pred HHHHHHHHHHhhc----------------CCeEEEEEEEcCCEEEEEEEeCCCCCCHHHHHHhCCCceeC----------
Confidence 5678999998772 24566666665556679999999999998875433322111
Q ss_pred hcccCCCCCcccccccchhhhhhcccc
Q 007698 187 ENNDLGADNGLIGQFGVGFYSAFLVAQ 213 (592)
Q Consensus 187 ~~~~~~~~~~~IGqFGIGf~S~F~Vad 213 (592)
......+..|+|++-+-.+++
T Consensus 105 ------~~~~~~~g~GlGL~i~~~~~~ 125 (161)
T 1bxd_A 105 ------DSARTISGTGLGLAIVQRIVD 125 (161)
T ss_dssp ------SCCCCCCCCSCCCCTTHHHHH
T ss_pred ------CCCCCCCCcccCHHHHHHHHH
Confidence 011113568999987766654
No 53
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=97.02 E-value=0.00038 Score=64.30 Aligned_cols=79 Identities=24% Similarity=0.361 Sum_probs=48.6
Q ss_pred hHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCC--CCcEEEEEeCCCCCCHHHHHHHHhhhhcccchhHHHH
Q 007698 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDP--ENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKA 184 (592)
Q Consensus 107 fLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~--~~~~L~I~DNGiGMt~eeL~~~L~tIa~Sgt~~f~~~ 184 (592)
+|.+||.||+.+.. ..+.+.|.+.... +.-.|+|.|||.||+.+++...+....++..
T Consensus 47 il~nLl~NAi~~~~--------------~~~~i~I~i~~~~~~~~~~i~V~D~G~gi~~~~~~~lf~~~~~~~~------ 106 (177)
T 3sl2_A 47 VLDNIISNALKYSP--------------EGGHVTFSIDVNEEEELLYISVKDEGIGIPKKDVEKVFDRFYRVDK------ 106 (177)
T ss_dssp HHHHHHHHHHHTCC--------------TTCCEEEEEEEETTTTEEEEEEECCSSCCCTTTTTTTTSTTCCCC-------
T ss_pred HHHHHHHHHHHhCC--------------CCCeEEEEEEEccCCCEEEEEEEECCCCCCHHHHHHHHhhhccCCC------
Confidence 67899999998831 1244566664333 3457999999999999887644433221110
Q ss_pred hhhcccCCCCCcccccccchhhhhhcccc
Q 007698 185 LKENNDLGADNGLIGQFGVGFYSAFLVAQ 213 (592)
Q Consensus 185 l~~~~~~~~~~~~IGqFGIGf~S~F~Vad 213 (592)
......+..|+|++.+-.+++
T Consensus 107 --------~~~~~~~g~GlGL~iv~~~~~ 127 (177)
T 3sl2_A 107 --------ARTRKLGGTGLGLAIAKEMVQ 127 (177)
T ss_dssp -------------CCCCCCHHHHHHHHHH
T ss_pred --------CCCCCCCCCCcCHHHHHHHHH
Confidence 111234578999987766654
No 54
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=97.01 E-value=0.00091 Score=64.03 Aligned_cols=74 Identities=27% Similarity=0.398 Sum_probs=49.4
Q ss_pred hHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHHHHHHHHhhhhcccchhHHHHhh
Q 007698 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKALK 186 (592)
Q Consensus 107 fLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~L~tIa~Sgt~~f~~~l~ 186 (592)
++.+||.||+.+.. ..+.+.|.+..+.+.-.|+|.|||.||+.+++...+...- ++
T Consensus 127 il~nLl~NA~~~~~--------------~~~~i~i~~~~~~~~~~i~i~D~G~gi~~~~~~~if~~~~-~~--------- 182 (244)
T 3d36_A 127 CLLNVMKNAIEAMP--------------NGGTLQVYVSIDNGRVLIRIADTGVGMTKEQLERLGEPYF-TT--------- 182 (244)
T ss_dssp HHHHHHHHHHHTCT--------------TCEEEEEEEEEETTEEEEEEEECSSCCCHHHHHHTTSTTC-CS---------
T ss_pred HHHHHHHHHHHhcc--------------CCCeEEEEEEEeCCEEEEEEEecCCCCCHHHHHHHhcccc-cC---------
Confidence 57789999988831 1234566666655566899999999999998865433211 10
Q ss_pred hcccCCCCCcccccccchhhhhhcccc
Q 007698 187 ENNDLGADNGLIGQFGVGFYSAFLVAQ 213 (592)
Q Consensus 187 ~~~~~~~~~~~IGqFGIGf~S~F~Vad 213 (592)
...+..|+|++.+-.+++
T Consensus 183 ---------~~~~g~GlGL~i~~~i~~ 200 (244)
T 3d36_A 183 ---------KGVKGTGLGMMVVYRIIE 200 (244)
T ss_dssp ---------SGGGCCSCHHHHHHHHHH
T ss_pred ---------CCCCCcchhHHHHHHHHH
Confidence 113457999988877654
No 55
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=96.98 E-value=0.00081 Score=62.74 Aligned_cols=56 Identities=27% Similarity=0.329 Sum_probs=35.0
Q ss_pred hHHhhhhcHHhHHHHH---hhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHHHHH
Q 007698 107 FLRELVSNASDALDKL---RFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELV 167 (592)
Q Consensus 107 fLRELIqNA~DA~~k~---r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~ 167 (592)
+|.+||.||+.+..+. +....+. ..+.+.|.+..+.+.-.|+|.|||.||+.+++.
T Consensus 51 il~nLl~NAik~~~~~~~~~~~~~~~-----~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~~~ 109 (189)
T 1i58_A 51 PLLHLLRNAIDHGIEPKEERIAKGKP-----PIGTLILSARHEGNNVVIEVEDDGRGIDKEKII 109 (189)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHTSC-----SSEEEEEEEEEETTEEEEEEEECSSCCCHHHHH
T ss_pred HHHHHHHHHHHhhhccccccccccCC-----CCCeEEEEEEecCCEEEEEEEeCCCCcCHHHHh
Confidence 4789999999984100 0000000 123445555545555679999999999999874
No 56
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=96.92 E-value=0.00069 Score=71.27 Aligned_cols=99 Identities=24% Similarity=0.324 Sum_probs=54.9
Q ss_pred hhHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHHHHHHHHhhhhcccchh-----
Q 007698 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSK----- 180 (592)
Q Consensus 106 vfLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~~L~tIa~Sgt~~----- 180 (592)
.+|.+||.||+.|.....-. .+ ...+.+.|.+..+.+.-.|+|.|||.||+.+++...|...-+.....
T Consensus 241 ~il~NLl~NAik~~~~~~~~---~~---~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~~~ 314 (388)
T 1gkz_A 241 YILPELLKNAMRATMESHLD---TP---YNVPDVVITIANNDVDLIIRISDRGGGIAHKDLDRVMDYHFTTAEASTQDPR 314 (388)
T ss_dssp HHHHHHHHHHHHHHHHTCTT---CT---TSCCCEEEEEEECSSEEEEEEECCSCCCCTTTTTTTTSTTCCCC--------
T ss_pred HHHHHHHHHHHHHhhccccC---CC---CCCCCEEEEEEeCCCEEEEEEEEeCCCcCHHHHHHhcCcccccCCCcccccc
Confidence 46889999999997531100 00 01135666666555556899999999999998865443322111100
Q ss_pred ----HHHHhhhcccCCCCCcccccccchhhhhhcccc
Q 007698 181 ----FLKALKENNDLGADNGLIGQFGVGFYSAFLVAQ 213 (592)
Q Consensus 181 ----f~~~l~~~~~~~~~~~~IGqFGIGf~S~F~Vad 213 (592)
| ..+... ........+..|+|++-|-.+++
T Consensus 315 ~~~~~-~~~~~~--~~~~~~~~~G~GLGL~i~r~i~~ 348 (388)
T 1gkz_A 315 ISPLF-GHLDMH--SGGQSGPMHGFGFGLPTSRAYAE 348 (388)
T ss_dssp --------------------CCSCSSCHHHHHHHHHH
T ss_pred cccch-hhcccc--cccCCCCcCCccCCHHHHHHHHH
Confidence 0 000000 00112345679999988877765
No 57
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=96.90 E-value=0.0009 Score=65.36 Aligned_cols=80 Identities=18% Similarity=0.205 Sum_probs=45.9
Q ss_pred hHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEE--eCCCCcEEEEEeCCCCCCHHHHHHHHhhhhcccchhHHHH
Q 007698 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIK--PDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKA 184 (592)
Q Consensus 107 fLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~--~d~~~~~L~I~DNGiGMt~eeL~~~L~tIa~Sgt~~f~~~ 184 (592)
++..||+||+++... +.....|.|. .+.+.-.|+|.|||+||+.+++...+...-+...
T Consensus 142 il~NLl~NAik~~~~-------------~~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~------ 202 (258)
T 2c2a_A 142 VLLNLLNNGVKYSKK-------------DAPDKYVKVILDEKDGGVLIIVEDNGIGIPDHAKDRIFEQFYRVDS------ 202 (258)
T ss_dssp HHHHHHHHHHHTCCT-------------TCTTCEEEEEEEEETTEEEEEEEECSSCCCGGGTTGGGSTTCCCC-------
T ss_pred HHHHHHHHHHhcCcC-------------CCCceeEEEEEecCCCeEEEEEEecCCCCCHHHHHhhccccccCCC------
Confidence 567899999888310 1122334444 3444467999999999999988655443322110
Q ss_pred hhhcccCCCCCcccccccchhhhhhcccc
Q 007698 185 LKENNDLGADNGLIGQFGVGFYSAFLVAQ 213 (592)
Q Consensus 185 l~~~~~~~~~~~~IGqFGIGf~S~F~Vad 213 (592)
......+..|+|++-|-.+++
T Consensus 203 --------~~~~~~~G~GLGL~i~~~iv~ 223 (258)
T 2c2a_A 203 --------SLTYEVPGTGLGLAITKEIVE 223 (258)
T ss_dssp ----------------CCCTHHHHHHHHH
T ss_pred --------CCCCCCCCcchHHHHHHHHHH
Confidence 011123457999987776654
No 58
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=96.88 E-value=0.0009 Score=63.43 Aligned_cols=45 Identities=24% Similarity=0.227 Sum_probs=31.0
Q ss_pred hHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHHHH
Q 007698 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEEL 166 (592)
Q Consensus 107 fLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL 166 (592)
+++||+.||+.+. +.+.+.|.+..+.+.-.|+|.|||+||+.+++
T Consensus 134 il~nll~Na~k~~---------------~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~ 178 (218)
T 3ehh_A 134 CLKEAVTNVVKHS---------------QAKTCRVDIQQLWKEVVITVSDDGTFKGEENS 178 (218)
T ss_dssp HHHHHHHHHHHHT---------------CCSEEEEEEEEETTEEEEEEEESSCCCC----
T ss_pred HHHHHHHHHHHhC---------------CCCEEEEEEEEeCCEEEEEEEECCcCCCCCCC
Confidence 6889999998873 12345566655555668999999999998765
No 59
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=96.87 E-value=0.00057 Score=61.17 Aligned_cols=74 Identities=22% Similarity=0.304 Sum_probs=37.1
Q ss_pred hHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCC----------CcEEEEEeCCCCCCHHHHHHHHhhhhcc
Q 007698 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE----------NGTITITDTGIGMTKEELVDCLGTIAQS 176 (592)
Q Consensus 107 fLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~----------~~~L~I~DNGiGMt~eeL~~~L~tIa~S 176 (592)
++.+||.||+.+... ..+.+.|.+..+.. .-.|+|.|||.||+.+++...+...-++
T Consensus 52 il~nLl~NAik~~~~-------------~~~~I~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~gi~~~~~~~lf~~~~~~ 118 (160)
T 1r62_A 52 VLLNIVRNALQALGP-------------EGGEIILRTRTAFQLTLHGERYRLAARIDVEDNGPGIPPHLQDTLFYPMVSG 118 (160)
T ss_dssp HHHHHHHHHHHHHGG-------------GCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECTTC---------------
T ss_pred HHHHHHHHHHHHhhc-------------cCCeEEEEEeccccccccccccccEEEEEEEeCCCCCCHHHHHHhhCccccC
Confidence 567999999998521 01334444444333 3468999999999999886544321110
Q ss_pred cchhHHHHhhhcccCCCCCcccccccchhhhhhcccc
Q 007698 177 GTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQ 213 (592)
Q Consensus 177 gt~~f~~~l~~~~~~~~~~~~IGqFGIGf~S~F~Vad 213 (592)
.-+..|+|++.+-.+++
T Consensus 119 --------------------~~~g~GlGL~i~~~~~~ 135 (160)
T 1r62_A 119 --------------------REGGTGLGLSIARNLID 135 (160)
T ss_dssp -------------------------CHHHHHHHHHHH
T ss_pred --------------------CCCCCccCHHHHHHHHH
Confidence 01457999987766654
No 60
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=96.55 E-value=0.0014 Score=57.53 Aligned_cols=45 Identities=24% Similarity=0.227 Sum_probs=33.2
Q ss_pred hHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHHHH
Q 007698 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEEL 166 (592)
Q Consensus 107 fLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL 166 (592)
+++|||+||..+. ....+.|++..+.+.-.|+|.|||.||+.+++
T Consensus 44 il~nll~Na~k~~---------------~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~ 88 (128)
T 3ehg_A 44 CLKEAVTNVVKHS---------------QAKTCRVDIQQLWKEVVITVSDDGTFKGEENS 88 (128)
T ss_dssp HHHHHHHHHHHHT---------------CCSEEEEEEEEETTEEEEEEEESSCCCSCSSC
T ss_pred HHHHHHHHHHhcC---------------CCcEEEEEEEEeCCEEEEEEEECCcCcCcccC
Confidence 6789999998872 12345566655555568999999999987654
No 61
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=96.09 E-value=0.013 Score=61.83 Aligned_cols=55 Identities=27% Similarity=0.377 Sum_probs=34.7
Q ss_pred hHHhhhhcHHhHH----HHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHHHHH
Q 007698 107 FLRELVSNASDAL----DKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELV 167 (592)
Q Consensus 107 fLRELIqNA~DA~----~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~ 167 (592)
.+.+||.||+|+. +.++... . | ..+.+.|++..+.+.-.|+|.|||.||+.+.+.
T Consensus 110 ~l~nLl~NAi~h~~e~~~~r~~~g-k-~----~~g~I~i~~~~~~~~v~i~V~D~G~Gi~~~~~~ 168 (379)
T 1b3q_A 110 PLLHLLRNAIDHGIEPKEERIAKG-K-P----PIGTLILSARHEGNNVVIEVEDDGRGIDKEKII 168 (379)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHTT-C-C----SSEEEEEEEEEETTEEEEEEEECSCCCCHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHhcC-C-C----CCcEEEEEEEEeCCEEEEEEEECCCCCCHHHHH
Confidence 4789999999995 1111110 0 1 123344444444444579999999999999874
No 62
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=96.06 E-value=0.0024 Score=64.54 Aligned_cols=48 Identities=21% Similarity=0.259 Sum_probs=35.7
Q ss_pred hHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHHHHHH
Q 007698 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVD 168 (592)
Q Consensus 107 fLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~eeL~~ 168 (592)
++.+||.||+.+.. ..+.+.|.+..+.+.-.|+|.|||+||+.+++..
T Consensus 248 vl~nLl~NA~k~~~--------------~~~~i~i~~~~~~~~~~i~v~D~G~Gi~~~~~~~ 295 (349)
T 3a0r_A 248 VLINLVQNAIEATG--------------ENGKIKITSEDMYTKVRVSVWNSGPPIPEELKEK 295 (349)
T ss_dssp HHHHHHTHHHHTTC--------------TTCCEEEEEEEETTEEEEEEEEESCCCCGGGGTT
T ss_pred HHHHHHHHHHHhcc--------------CCCEEEEEEEecCCEEEEEEEECCCCCChHHHhh
Confidence 57899999988831 2345666666555566899999999999988753
No 63
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=96.05 E-value=0.0027 Score=54.91 Aligned_cols=43 Identities=30% Similarity=0.502 Sum_probs=32.1
Q ss_pred hHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHHH
Q 007698 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEE 165 (592)
Q Consensus 107 fLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~ee 165 (592)
++.||+.||..+. ....+.|.+..+.+ -.|+|+|||.||+.++
T Consensus 43 il~nll~Na~k~~---------------~~~~i~i~~~~~~~-~~i~v~D~G~gi~~~~ 85 (124)
T 3zxq_A 43 VLREAVSNAVRHA---------------NATSLAINVSVEDD-VRVEVVDDGVGISGDI 85 (124)
T ss_dssp HHHHHHHHHHTCT---------------TCCEEEEEEEEEEE-EEEEEEECCCSSCGGG
T ss_pred HHHHHHHHHHHhC---------------CCCEEEEEEEeCCC-EEEEEEECCCCCCccc
Confidence 6889999998763 12345666665556 7899999999998765
No 64
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=95.97 E-value=0.0023 Score=55.56 Aligned_cols=43 Identities=42% Similarity=0.529 Sum_probs=32.9
Q ss_pred hHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCCCCHHH
Q 007698 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEE 165 (592)
Q Consensus 107 fLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiGMt~ee 165 (592)
++.|||.||..+. ..+.+.|++..+.+ -.|+|.|||.||+.++
T Consensus 47 il~nll~NA~k~~---------------~~~~i~i~~~~~~~-~~i~v~D~G~gi~~~~ 89 (129)
T 3zxo_A 47 VVREAVSNAVRHA---------------AASTLTVRVKVDDD-LCIEVTDNGRGMPDEF 89 (129)
T ss_dssp HHHHHHHHCCCCS---------------SCCEEEEEEEESSE-EEEEEEECCCCCTTTT
T ss_pred HHHHHHHHHHHhC---------------CCceEEEEEEEcCC-EEEEEecCCCCCCccc
Confidence 6889999999883 12456667766666 7899999999997644
No 65
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=94.53 E-value=0.033 Score=54.70 Aligned_cols=46 Identities=17% Similarity=0.130 Sum_probs=30.2
Q ss_pred hHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCCC--CCHHHH
Q 007698 107 FLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIG--MTKEEL 166 (592)
Q Consensus 107 fLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGiG--Mt~eeL 166 (592)
++.=||+||.+|. ..++.+.|++..+.+.-.|+|.|+|.| ++++.+
T Consensus 150 vl~NLl~NA~~a~--------------~~gg~I~v~~~~~~~~~~i~V~D~G~Gi~i~~~~~ 197 (247)
T 4fpp_A 150 AVLNIAQIAASAL--------------PAGGVATVKGVAADGRFSIIADAKGPRARLRPEVL 197 (247)
T ss_dssp HHHHHHHHHHTTC--------------TTCCEEEEEEEEETTEEEEEEEEESTTCCCCHHHH
T ss_pred HHHHHHHHHHHhc--------------CCCCeEEEEEEEECCEEEEEEEEcCCCCCCCHHHH
Confidence 3456788888873 123456666666666678999999977 554433
No 66
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=89.39 E-value=0.49 Score=49.97 Aligned_cols=73 Identities=15% Similarity=0.105 Sum_probs=43.3
Q ss_pred hhHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCC-CcEEEEEeCCCCCCHHHHHHHHhhhhcccchhHHHH
Q 007698 106 VFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE-NGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKA 184 (592)
Q Consensus 106 vfLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~-~~~L~I~DNGiGMt~eeL~~~L~tIa~Sgt~~f~~~ 184 (592)
.++.||+.||+..-- + ....+.+.|++..+.+ .-.|+|.|+|.|++.. +.
T Consensus 300 l~v~El~~Nav~Ha~---------~--~~~~g~i~v~~~~~~~~~l~i~V~D~G~g~~~~-----------~~------- 350 (399)
T 3ke6_A 300 HAISEFVENAVEHGY---------A--TDVSKGIVVAAALAGDGNVRASVIDRGQWKDHR-----------DG------- 350 (399)
T ss_dssp HHHHHHHHHHHHHBC---------C--SCCTTCEEEEEEECTTSEEEEEEEESCBC------------------------
T ss_pred HHHHHHHHHHHHhcc---------c--CCCCceEEEEEEEcCCCEEEEEEEECCCCCCCC-----------CC-------
Confidence 589999999998820 0 0113556677766543 4679999999999865 10
Q ss_pred hhhcccCCCCCcccccccchhhhhhccccEEEEEEe
Q 007698 185 LKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTK 220 (592)
Q Consensus 185 l~~~~~~~~~~~~IGqFGIGf~S~F~VadkV~V~Sr 220 (592)
-+.-|.|++-+=.+++++.+.+.
T Consensus 351 -------------~~~~G~GL~lv~~l~~~~~~~~~ 373 (399)
T 3ke6_A 351 -------------ARGRGRGLAMAEALVSEARIMHG 373 (399)
T ss_dssp -------------------CHHHHHTTSSEEEEEEE
T ss_pred -------------CCCCCcHHHHHHHHHHheeeEEC
Confidence 02347788777778888776543
No 67
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=79.61 E-value=1.1 Score=42.82 Aligned_cols=54 Identities=11% Similarity=0.107 Sum_probs=35.7
Q ss_pred HhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeC--CCCcEEEEEeCCCCCCHHHHHHHH
Q 007698 109 RELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPD--PENGTITITDTGIGMTKEELVDCL 170 (592)
Q Consensus 109 RELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d--~~~~~L~I~DNGiGMt~eeL~~~L 170 (592)
-.||.||.+|++... .+ .....+.|.|..+ .+.-.|.|.|+|.|++.+.+...|
T Consensus 111 gnLi~na~~Ai~~~~-----~~---~~~~~I~i~i~~~~~~~~l~i~V~d~G~~i~~e~~~~if 166 (192)
T 1ixm_A 111 AKLMRKLFHLFDQAV-----SR---ESENHLTVSLQTDHPDRQLILYLDFHGAFADPSAFDDIR 166 (192)
T ss_dssp HHHHHHHHHHHHHHB-----CT---TSCCEEEEEEECCCSSSSCEEEEEEESCBSCGGGCC---
T ss_pred HHHHHHHHHHHHhhh-----cc---CCCCeEEEEEEEecCCCEEEEEEEeCCCCCCHHHHHHHH
Confidence 458999999986431 11 1234566666665 456789999999999998765443
No 68
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=27.27 E-value=1.2e+02 Score=26.58 Aligned_cols=48 Identities=19% Similarity=0.275 Sum_probs=34.8
Q ss_pred HHHHHHhcCCCCCcEEEEecCCHHHHhcChHHHHHHhCCCeEEEeccccch
Q 007698 527 LDEYVENMGEKQNAIYYLATDSLKSAKSAPFLEKLVQKDIEVRTSFVELYN 577 (592)
Q Consensus 527 L~eYv~rmk~~Qk~IYY~~~~s~~~~~~sp~lE~~~~kg~EVL~~~~~~d~ 577 (592)
+.+..+|-+. -..+..++.++.+.++ .|+|..+.+|.||...|..-|+
T Consensus 68 ireiwerypq-ldvvvivttddkewik--dfieeakergvevfvvynnkdd 115 (162)
T 2l82_A 68 IREIWERYPQ-LDVVVIVTTDDKEWIK--DFIEEAKERGVEVFVVYNNKDD 115 (162)
T ss_dssp HHHHHHHCTT-CCEEEEEECCCHHHHH--HHHHHHHHTTCEEEEEEECSCH
T ss_pred HHHHHHhCCC-CcEEEEEecCcHHHHH--HHHHHHHhcCcEEEEEecCCCc
Confidence 3444555442 2345677888888875 5999999999999999887754
Done!