BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007699
(592 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QDL|A Chain A, The Crystal Structure Of Anthranilate Synthase From
Sulfolobus Solfataricus
Length = 422
Score = 236 bits (603), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 161/416 (38%), Positives = 224/416 (53%), Gaps = 54/416 (12%)
Query: 169 DDPMEIPRKISEDWKPQIIDELPEAFCGGWVGYFSYDTVRYVEKKKLPFSKAPHDDRSLA 228
DDP+ I +D K + ++P F GG +GY SYD VR+ EK + K +D A
Sbjct: 57 DDPVNILNGYLKDLK---LADIPGLFKGGMIGYISYDAVRFWEKIRD--LKPAAEDWPYA 111
Query: 229 DIHLGLYNDVLVFDHVEKKVYVIHWVRLDQHSSVQKAYAEGLEHLEKLVARKVITRSIDL 288
+ ++++++DH E KVYV SSV G
Sbjct: 112 EFFTP--DNIIIYDHNEGKVYVNA-----DLSSVGGCGDIG------------------- 145
Query: 289 HTHHFGPPLKKSNMTSEAYKNAVLEAKEHIQAGDIFQIVLSQRFERRTFA-DPFEVYRAL 347
F ++ +Y+ V E+ E+I++G IFQ+VLS RF R F+ DP +Y L
Sbjct: 146 ---EFKVSFYDESLNKNSYERIVSESLEYIRSGYIFQVVLS-RFYRYIFSGDPLRIYYNL 201
Query: 348 RVVNPSPYMTYLQARGCILVASSPEILTRVKKNKIVNRPLAGTVRRGRTTEEDEMLETQL 407
R +NPSPYM YL+ L+ SSPE+L RV+ N + P+AGT RG EED LE +L
Sbjct: 202 RRINPSPYMFYLKFDEKYLIGSSPELLFRVQDNIVETYPIAGTRPRGADQEEDLKLELEL 261
Query: 408 LKDAKQCAEHVMLVDLGRNDVGKVARSGSVKVEKLMNVERYSHVMHISSTITGELQDRLS 467
+ K AEH+MLVDL RND+GKV G+VKV +LM VE+YSHV HI S + G L+ + +
Sbjct: 262 MNSEKDKAEHLMLVDLARNDLGKVCVPGTVKVPELMYVEKYSHVQHIVSKVIGTLKKKYN 321
Query: 468 CWDALRAALPVGTVSGAPKVKAMELIDELEVNRRGPYSGGFGGVSFTGDMDIALALRTMV 527
+ L A P GTVSGAPK AM +I+ LE +RGPY+G G +S G+ + A+A+RT
Sbjct: 322 ALNVLSATFPAGTVSGAPKPMAMNIIETLEEYKRGPYAGAVGFISADGNAEFAIAIRT-- 379
Query: 528 FQTGTRYDTMYSYKDARKRREWVAYLQAGAGIVADSDPDDEHRECQNKAAGLARAI 583
A +E + + AGAGIV DS+P+ E+ E ++K L AI
Sbjct: 380 ---------------AFLNKELLR-IHAGAGIVYDSNPESEYFETEHKLKALKTAI 419
>pdb|1K0E|A Chain A, The Crystal Structure Of Aminodeoxychorismate Synthase
From Formate Grown Crystals
pdb|1K0E|B Chain B, The Crystal Structure Of Aminodeoxychorismate Synthase
From Formate Grown Crystals
pdb|1K0G|A Chain A, The Crystal Structure Of Aminodeoxychorismate Synthase
From Phosphate Grown Crystals
pdb|1K0G|B Chain B, The Crystal Structure Of Aminodeoxychorismate Synthase
From Phosphate Grown Crystals
Length = 453
Score = 224 bits (570), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 145/455 (31%), Positives = 237/455 (52%), Gaps = 51/455 (11%)
Query: 134 RYSVVGAQPVMEVIVKDNNVTIMDHEKGSLVEEVVDDPMEIPRKISE--DWKPQIIDELP 191
R+ +V A+P+ + + + EK + DDP+++ +++ + D +P ++LP
Sbjct: 45 RFDIVVAEPICTLTTFGKETVVSESEKRT---TTTDDPLQVLQQVLDRADIRPTHNEDLP 101
Query: 192 EAFCGGWVGYFSYDTVRYVEKKKLPFSKAPHDDRSLADIHLGLYNDVLVFDHVEKKVYVI 251
F GG +G F YD R E LP + D L D+ +G+Y+ L+ DH
Sbjct: 102 --FQGGALGLFGYDLGRRFES--LP--EIAEQDIVLPDMAVGIYDWALIVDHQR------ 149
Query: 252 HWVRLDQHSSV--QKAYAEGLEHLEKLVARKVITRSIDLHTHHFGPPLKKSNMTSEAYKN 309
H V L H+ V ++A+ E ++ ++ T + D +SNMT E Y
Sbjct: 150 HTVSLLSHNDVNARRAWLES----QQFSPQEDFTLTSDW----------QSNMTREQYGE 195
Query: 310 AVLEAKEHIQAGDIFQIVLSQRFERRTFADPFEVYRALRVVNPSPYMTYLQARGCILVAS 369
+ +E++ +GD +Q+ L+QRF D ++ + L N +P+ +L+ +++
Sbjct: 196 KFRQVQEYLHSGDCYQVNLAQRFHATYSGDEWQAFLQLNQANRAPFSAFLRLEQGAILSL 255
Query: 370 SPEILTRVKKNKIVNRPLAGTVRRGRTTEEDEMLETQLLKDAKQCAEHVMLVDLGRNDVG 429
SPE ++I RP+ GT+ R +ED +L AK AE++M+VDL RND+G
Sbjct: 256 SPERFILCDNSEIQTRPIKGTLPRLPDPQEDSKQAVKLANSAKDRAENLMIVDLMRNDIG 315
Query: 430 KVARSGSVKVEKLMNVERYSHVMHISSTITGELQDRLSCWDALRAALPVGTVSGAPKVKA 489
+VA +GSVKV +L VE + V H+ STIT +L ++L D LRAA P G+++GAPKV+A
Sbjct: 316 RVAVAGSVKVPELFVVEPFPAVHHLVSTITAQLPEQLHASDLLRAAFPGGSITGAPKVRA 375
Query: 490 MELIDELEVNRRGPYSGGFGGVSFTGDMDIALALRTMVFQTGTRYDTMYSYKDARKRREW 549
ME+IDELE RR + G G +SF G+MD ++ +RT+ G
Sbjct: 376 MEIIDELEPQRRNAWCGSIGYLSFCGNMDTSITIRTLTAINGQ----------------- 418
Query: 550 VAYLQAGAGIVADSDPDDEHRECQNKAAGLARAID 584
+ AG GIVADS + E++E +K + + ++
Sbjct: 419 -IFCSAGGGIVADSQEEAEYQETFDKVNRILKQLE 452
>pdb|1I1Q|A Chain A, Structure Of The Cooperative Allosteric Anthranilate
Synthase From Salmonella Typhimurium
Length = 520
Score = 190 bits (482), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 135/405 (33%), Positives = 200/405 (49%), Gaps = 47/405 (11%)
Query: 198 WVGYFSYDTVRYVEKKKLPFSKAPHDDRSLADIHLGLYNDVLVFDHVEKKVYVIHWV--- 254
+ G F+YD V E LP +A ++ D L ++V DH +K + +
Sbjct: 146 FGGLFAYDLVAGFEA--LPHLEAGNN---CPDYCFYLAETLMVIDHQKKSTRIQASLFTA 200
Query: 255 --RLDQHSSVQKAYAEGLEHLEKLVARKVITRSIDLHTHHFGPPLKKSNMTSEAYKNAVL 312
R Q + + AY + L + +T D+ + N + +A+ V
Sbjct: 201 SDREKQRLNARLAYLS--QQLTQPAPPLPVTPVPDMRC--------ECNQSDDAFGAVVR 250
Query: 313 EAKEHIQAGDIFQIVLSQRFERRTFADPFEVYRALRVVNPSPYMTYLQARGCILVASSPE 372
+ ++ I+AG+IFQ+V S+RF P Y L+ NPSPYM ++Q L +SPE
Sbjct: 251 QLQKAIRAGEIFQVVPSRRFSLPC-PSPLAAYYVLKKSNPSPYMFFMQDNDFTLFGASPE 309
Query: 373 ILTR--VKKNKIVNRPLAGTVRRGRTTEE------DEMLETQLLKDAKQCAEHVMLVDLG 424
+ +I P+AGT RGR + D +E + D K+ +EH+MLVDL
Sbjct: 310 SSLKYDAASRQIEIYPIAGTRPRGRRADGTLDRDLDSRIELDMRTDHKELSEHLMLVDLA 369
Query: 425 RNDVGKVARSGSVKVEKLMNVERYSHVMHISSTITGELQDRLSCWDALRAALPVGTVSGA 484
RND+ ++ GS V L V+RYS+VMH+ S + GEL+ L A RA + +GT+SGA
Sbjct: 370 RNDLARICTPGSRYVADLTKVDRYSYVMHLVSRVVGELRHDLDALHAYRACMNMGTLSGA 429
Query: 485 PKVKAMELIDELEVNRRGPYSGGFGGVSFTGDMDIALALRTMVFQTGTRYDTMYSYKDAR 544
PKV+AM+LI + E RRG Y G G + GD+D + +R+ + + G
Sbjct: 430 PKVRAMQLIADAEGQRRGSYGGAVGYFTAHGDLDTCIVIRSALVENG------------- 476
Query: 545 KRREWVAYLQAGAGIVADSDPDDEHRECQNKAAGLARAIDLAESA 589
+A +QAGAGIV DS P E E +NKA + RAI A A
Sbjct: 477 -----IATVQAGAGIVLDSVPQSEADETRNKARAVLRAIATAHHA 516
>pdb|1I7Q|A Chain A, Anthranilate Synthase From S. Marcescens
pdb|1I7Q|C Chain C, Anthranilate Synthase From S. Marcescens
pdb|1I7S|A Chain A, Anthranilate Synthase From Serratia Marcescens In Complex
With Its End Product Inhibitor L-Tryptophan
pdb|1I7S|C Chain C, Anthranilate Synthase From Serratia Marcescens In Complex
With Its End Product Inhibitor L-Tryptophan
Length = 519
Score = 186 bits (471), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 138/399 (34%), Positives = 196/399 (49%), Gaps = 39/399 (9%)
Query: 200 GYFSYDTVRYVEKKKLPFSKAPHDDRSLADIHLGLYNDVLVFDHVEKKVYVIHWVRLDQH 259
G F+YD V E LP A D+ D L +LV DH + V +Q
Sbjct: 147 GLFAYDLVAGFEN--LP---ALRQDQRCPDFCFYLAETLLVLDHQRGSARLQASVFSEQA 201
Query: 260 SSVQKAYAEGLEH-LEKLVARKVITRSIDLHTHHFGPPLKKSNMTSEAYKNAVLEAKEHI 318
S Q+ L+H LE+L A ++ + N + E Y V E +E I
Sbjct: 202 SEAQR-----LQHRLEQLQA-ELQQPPQPIPHQKLENMQLSCNQSDEEYGAVVSELQEAI 255
Query: 319 QAGDIFQIVLSQRFERRTFADPFEVYRALRVVNPSPYMTYLQARGCILVASSPEILTR-- 376
+ G+IFQ+V S+RF A P Y+ L+ NPSPYM ++Q L +SPE +
Sbjct: 256 RQGEIFQVVPSRRFSLPCPA-PLGPYQTLKDNNPSPYMFFMQDDDFTLFGASPESALKYD 314
Query: 377 VKKNKIVNRPLAGTVRRGRTTEE------DEMLETQLLKDAKQCAEHVMLVDLGRNDVGK 430
+I P+AGT RGR + D +E ++ D K+ AEH+MLVDL RND+ +
Sbjct: 315 AGNRQIEIYPIAGTRPRGRRADGSLDLDLDSRIELEMRTDHKELAEHLMLVDLARNDLAR 374
Query: 431 VARSGSVKVEKLMNVERYSHVMHISSTITGELQDRLSCWDALRAALPVGTVSGAPKVKAM 490
+ ++GS V L V+RYS VMH+ S + G L+ L A +A + +GT+SGAPKV+AM
Sbjct: 375 ICQAGSRYVADLTKVDRYSFVMHLVSRVVGTLRADLDVLHAYQACMNMGTLSGAPKVRAM 434
Query: 491 ELIDELEVNRRGPYSGGFGGVSFTGDMDIALALRTMVFQTGTRYDTMYSYKDARKRREWV 550
+LI L RRG Y G G + ++D + +R+ + G R
Sbjct: 435 QLIAALRSTRRGSYGGRVGYFTAVRNLDTCIVIRSAYVEDGHR----------------- 477
Query: 551 AYLQAGAGIVADSDPDDEHRECQNKAAGLARAIDLAESA 589
+QAGAG+V DS P+ E E +NKA + RAI A A
Sbjct: 478 -TVQAGAGVVQDSIPEREADETRNKARAVLRAIATAHHA 515
>pdb|4GRH|A Chain A, Crystal Structure Of Pabb Of Stenotrophomonas Maltophilia
Length = 457
Score = 185 bits (470), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 132/394 (33%), Positives = 196/394 (49%), Gaps = 44/394 (11%)
Query: 194 FCGGWVGYFSYDTVRYVEKKKLPFSKAPHDDRSLADIHLGLYNDVLVF-DHVEKKVYVIH 252
F GGW Y+ +E LP ++A D R A L L V DH + +VI
Sbjct: 100 FRGGWALMLDYEVASQIEPV-LP-ARARGDGRPTA---LALRCPAAVLHDHHNEASFVI- 153
Query: 253 WVRLDQHSSVQKAYAEGLEHLEKLVARKVITRSIDLHTHHFGPPLKKSNMTSEAYKNAVL 312
AE E + + ++ + PP + + + V
Sbjct: 154 --------------AEAGEQALLDALVALASAALPEAGQGWQPPQAVGEDAPQRFTDGVR 199
Query: 313 EAKEHIQAGDIFQIVLSQRFERRTFA--DPFEVYRALRVVNPSPYMTYLQARGCILVASS 370
E+++AGD+FQ+ LS+R+ + A P +Y LR NP+P+ A G +V+SS
Sbjct: 200 RVIEYLRAGDVFQVNLSRRWNAQFAAPVSPQALYAQLRRANPAPFAGLFSAHGRHVVSSS 259
Query: 371 PEILTRVKKNKIVNRPLAGTVRRGRTTEEDEMLETQ-LLKDAKQCAEHVMLVDLGRNDVG 429
PE L V RP+AGT R R +D+ Q L+ K+ AEHVML+DL RND+G
Sbjct: 260 PERLVSVHAGHAQTRPIAGT--RPRFEGDDDAARIQELVGHPKERAEHVMLIDLERNDLG 317
Query: 430 KVARSGSVKVEKLMNVERYSHVMHISSTITGELQDRLSCWDALRAALPVGTVSGAPKVKA 489
++ G+V V++LM VE Y+HV HI S ++G L+ ++ + + A P GT++G PKV+
Sbjct: 318 RICLPGTVVVDELMTVESYAHVHHIVSNVSGHLRPEVTPGEVIAATFPGGTITGCPKVRC 377
Query: 490 MELIDELEVNRRGPYSGGFGGVSFTGDMDIALALRTMVFQTGTRYDTMYSYKDARKRREW 549
M++I ELE RG Y+G FG ++ GD+D+ + +RT + D +
Sbjct: 378 MQIISELEQVPRGAYTGAFGWLNRDGDLDLNILIRT-------------AEVDGHE---- 420
Query: 550 VAYLQAGAGIVADSDPDDEHRECQNKAAGLARAI 583
+ GAGIV DSDPD E E + KA GL RA+
Sbjct: 421 -VSFRTGAGIVVDSDPDKELDETRAKARGLLRAL 453
>pdb|3H9M|A Chain A, Crystal Structure Of Para-Aminobenzoate Synthetase,
Component I From Cytophaga Hutchinsonii
Length = 436
Score = 139 bits (350), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 77/274 (28%), Positives = 138/274 (50%), Gaps = 16/274 (5%)
Query: 299 KSNMTSEAYKNAVLEAKEHIQAGDIFQIVLSQRFERRTFADPFEVYRALRVVNPSPYMTY 358
K ++ E+Y NA E ++ I GD ++I F + P Y+ L P P+ Y
Sbjct: 157 KQVVSKESYFNAFDELQQIIAQGDAYEINYCIPFTAKGNISPAATYQRLNKKTPXPFSVY 216
Query: 359 LQARGCILVASSPEILTRVKKNKIVNRPLAGTVRRGRTTEEDEMLETQLLKDAKQCAEHV 418
+ ++++SPE + + I+++P+ GT +RG++ EDE L+ QL K+ +E+
Sbjct: 217 YKFNTEYILSASPERFIKKTGDTIISQPIKGTSKRGKSKAEDEXLKQQLGTSEKEQSENT 276
Query: 419 MLVDLGRNDVGKVARSGSVKVEKLMNVERYSHVMHISSTITGELQDRLSCWDALRAALPV 478
+VDL RND+ + A +GSV V +L + + +V + ST+ + S D ++ A P
Sbjct: 277 XIVDLVRNDLSRTAVAGSVCVPELSGLYTFPNVHQLISTVQSTIDPACSSIDVIQQAFPX 336
Query: 479 GTVSGAPKVKAMELIDELEVNRRGPYSGGFGGVSFTGDMDIALALRTMVFQTGTRYDTMY 538
G+ +GAPKV + ID +E RGP+SG G + D + +R++ + + T+
Sbjct: 337 GSXTGAPKVNVXKFIDRIESXARGPFSGTVGYXDPHDNFDFNVLIRSIFYNSATQ----- 391
Query: 539 SYKDARKRREWVAYLQAGAGIVADSDPDDEHREC 572
+ +AG+ I + + + E+ EC
Sbjct: 392 -----------ELFXEAGSAITSYAKAETEYEEC 414
>pdb|2FN0|A Chain A, Crystal Structure Of Yersinia Enterocolitica Salicylate
Synthase (Irp9)
pdb|2FN0|B Chain B, Crystal Structure Of Yersinia Enterocolitica Salicylate
Synthase (Irp9)
pdb|2FN1|A Chain A, Crystal Structures Of Yersinia Enterocolitica Salicylate
Synthase (Irp9) In Complex With The Reaction Products
Salicylate And Pyruvate
pdb|2FN1|B Chain B, Crystal Structures Of Yersinia Enterocolitica Salicylate
Synthase (Irp9) In Complex With The Reaction Products
Salicylate And Pyruvate
Length = 437
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 92/292 (31%), Positives = 136/292 (46%), Gaps = 21/292 (7%)
Query: 290 THHFGPPLKKSNMTSEAYKNAVLEAKEHIQAGDIFQIVLSQRFERRTFAD-PFEVYRALR 348
T P + + EAYK V A I+ G+ ++++S+ + D P + +
Sbjct: 161 TTQNAPLAVDTALNGEAYKQQVARAVAEIRRGEYVKVIVSRAIPLPSRIDMPATLLYGRQ 220
Query: 349 VVNPSPYMTYLQARGCILVASSPEILTRVKKNKIVNRPLAGTVRRGRTTEEDEMLETQLL 408
P + Q G + SPE++ V NK+V PLAGT R E ++ E +LL
Sbjct: 221 ANTPVRSFMFRQ-EGREALGFSPELVMSVTGNKVVTEPLAGTRDRMGNPEHNKAKEAELL 279
Query: 409 KDAKQCAEHVMLVDLGRNDVGKVARSGSVKVEKLMNVERYSHVMHISSTITGELQDRLSC 468
D+K+ EH++ V ++ V GSV VE LM+V + V H+ S ++G+L +
Sbjct: 280 HDSKEVLEHILSVKEAIAELEAVCLPGSVVVEDLMSVRQRGSVQHLGSGVSGQLAENKDA 339
Query: 469 WDALRAALPVGTVSGAPKVKAMELIDELEVNRRGPYSGGFGGVSFTGDMDIALALRTMVF 528
WDA P T SG PK A+ I ++E R YSG + T D AL LR+ VF
Sbjct: 340 WDAFTVLFPSITASGIPKNAALNAIMQIEKTPRELYSGAILLLDDT-RFDAALVLRS-VF 397
Query: 529 QTGTRYDTMYSYKDARKRREWVAYLQAGAGIVADSDPDDEHRECQNKAAGLA 580
Q R ++QAGAGI+A S P+ E E + K A +A
Sbjct: 398 QDSQR-----------------CWIQAGAGIIAQSTPERELTETREKLASIA 432
>pdb|2I6Y|A Chain A, Structure And Mechanism Of Mycobacterium Tuberculosis
Salicylate Synthase, Mbti
Length = 470
Score = 95.5 bits (236), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 82/257 (31%), Positives = 113/257 (43%), Gaps = 21/257 (8%)
Query: 306 AYKNAVLEAKEHIQAGDIFQIVLSQRFERRTFADPFEV-YRALRVVNPSPYMTYLQARGC 364
++ V A + I AG +++LS+ E FA F + YR R N LQ G
Sbjct: 206 GFRRRVAVAVDEIAAGRYHKVILSRCVEV-PFAIDFPLTYRLGRRHNTPVRSFLLQLGGI 264
Query: 365 ILVASSPEILTRVKKNKIV-NRPLAGTVRRGRTTEEDEMLETQLLKDAKQCAEHVMLVDL 423
+ SPE++T V+ + +V PLAGT GR D + L ++K+ EH + V
Sbjct: 265 RALGYSPELVTAVRADGVVITEPLAGTRALGRGPAIDRLARDDLESNSKEIVEHAISVRS 324
Query: 424 GRNDVGKVARSGSVKVEKLMNVERYSHVMHISSTITGELQDRLSCWDALRAALPVGTVSG 483
++ +A GS V M V V H+ STI L AL A P T SG
Sbjct: 325 SLEEITDIAEPGSAAVIDFMTVRERGSVQHLGSTIRARLDPSSDRMAALEALFPAVTASG 384
Query: 484 APKVKAMELIDELEVNRRGPYSGGFGGVSFTGDMDIALALRTMVFQTGTRYDTMYSYKDA 543
PK +E I L+ RG YSG +S G +D AL LR +Q G R
Sbjct: 385 IPKAAGVEAIFRLDECPRGLYSGAVVMLSADGGLDAALTLRA-AYQVGGR---------- 433
Query: 544 RKRREWVAYLQAGAGIV 560
+L+AGAGI+
Sbjct: 434 -------TWLRAGAGII 443
>pdb|2G5F|A Chain A, The Structure Of Mbti From Mycobacterium Tuberculosis, The
First Enzyme In The Synthesis Of Mycobactin, Reveals It
To Be A Salicylate Synthase
pdb|2G5F|B Chain B, The Structure Of Mbti From Mycobacterium Tuberculosis, The
First Enzyme In The Synthesis Of Mycobactin, Reveals It
To Be A Salicylate Synthase
pdb|2G5F|C Chain C, The Structure Of Mbti From Mycobacterium Tuberculosis, The
First Enzyme In The Synthesis Of Mycobactin, Reveals It
To Be A Salicylate Synthase
pdb|2G5F|D Chain D, The Structure Of Mbti From Mycobacterium Tuberculosis, The
First Enzyme In The Synthesis Of Mycobactin, Reveals It
To Be A Salicylate Synthase
pdb|3RV6|A Chain A, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Phenyl R-Group
pdb|3RV6|B Chain B, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Phenyl R-Group
pdb|3RV7|A Chain A, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Isopropyl R-Group
pdb|3RV7|B Chain B, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Isopropyl R-Group
pdb|3RV7|C Chain C, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Isopropyl R-Group
pdb|3RV7|D Chain D, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Isopropyl R-Group
pdb|3RV9|A Chain A, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Ethyl R-Group
pdb|3RV9|B Chain B, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Ethyl R-Group
pdb|3RV9|C Chain C, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Ethyl R-Group
pdb|3RV9|D Chain D, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Ethyl R-Group
Length = 450
Score = 95.5 bits (236), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 82/257 (31%), Positives = 113/257 (43%), Gaps = 21/257 (8%)
Query: 306 AYKNAVLEAKEHIQAGDIFQIVLSQRFERRTFADPFEV-YRALRVVNPSPYMTYLQARGC 364
++ V A + I AG +++LS+ E FA F + YR R N LQ G
Sbjct: 186 GFRRRVAVAVDEIAAGRYHKVILSRCVEV-PFAIDFPLTYRLGRRHNTPVRSFLLQLGGI 244
Query: 365 ILVASSPEILTRVKKNKIV-NRPLAGTVRRGRTTEEDEMLETQLLKDAKQCAEHVMLVDL 423
+ SPE++T V+ + +V PLAGT GR D + L ++K+ EH + V
Sbjct: 245 RALGYSPELVTAVRADGVVITEPLAGTRALGRGPAIDRLARDDLESNSKEIVEHAISVRS 304
Query: 424 GRNDVGKVARSGSVKVEKLMNVERYSHVMHISSTITGELQDRLSCWDALRAALPVGTVSG 483
++ +A GS V M V V H+ STI L AL A P T SG
Sbjct: 305 SLEEITDIAEPGSAAVIDFMTVRERGSVQHLGSTIRARLDPSSDRMAALEALFPAVTASG 364
Query: 484 APKVKAMELIDELEVNRRGPYSGGFGGVSFTGDMDIALALRTMVFQTGTRYDTMYSYKDA 543
PK +E I L+ RG YSG +S G +D AL LR +Q G R
Sbjct: 365 IPKAAGVEAIFRLDECPRGLYSGAVVMLSADGGLDAALTLRA-AYQVGGR---------- 413
Query: 544 RKRREWVAYLQAGAGIV 560
+L+AGAGI+
Sbjct: 414 -------TWLRAGAGII 423
>pdb|3RV8|A Chain A, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Cyclopropyl R-Group
pdb|3RV8|B Chain B, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Cyclopropyl R-Group
pdb|3RV8|C Chain C, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Cyclopropyl R-Group
pdb|3RV8|D Chain D, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor With Cyclopropyl R-Group
pdb|3ST6|A Chain A, Structure Of A M. Tuberculosis Synthase, Mbti, In Complex
With An Isochorismate Analogue Inhibitor
pdb|3ST6|B Chain B, Structure Of A M. Tuberculosis Synthase, Mbti, In Complex
With An Isochorismate Analogue Inhibitor
pdb|3ST6|C Chain C, Structure Of A M. Tuberculosis Synthase, Mbti, In Complex
With An Isochorismate Analogue Inhibitor
pdb|3ST6|D Chain D, Structure Of A M. Tuberculosis Synthase, Mbti, In Complex
With An Isochorismate Analogue Inhibitor
Length = 450
Score = 95.5 bits (236), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 82/257 (31%), Positives = 113/257 (43%), Gaps = 21/257 (8%)
Query: 306 AYKNAVLEAKEHIQAGDIFQIVLSQRFERRTFADPFEV-YRALRVVNPSPYMTYLQARGC 364
++ V A + I AG +++LS+ E FA F + YR R N LQ G
Sbjct: 186 GFRRRVAVAVDEIAAGRYHKVILSRCVEV-PFAIDFPLTYRLGRRHNTPVRSFLLQLGGI 244
Query: 365 ILVASSPEILTRVKKNKIV-NRPLAGTVRRGRTTEEDEMLETQLLKDAKQCAEHVMLVDL 423
+ SPE++T V+ + +V PLAGT GR D + L ++K+ EH + V
Sbjct: 245 RALGYSPELVTAVRADGVVITEPLAGTRALGRGPAIDRLARDDLESNSKEIVEHAISVRS 304
Query: 424 GRNDVGKVARSGSVKVEKLMNVERYSHVMHISSTITGELQDRLSCWDALRAALPVGTVSG 483
++ +A GS V M V V H+ STI L AL A P T SG
Sbjct: 305 SLEEITDIAEPGSAAVIDFMTVRERGSVQHLGSTIRARLDPSSDRMAALEALFPAVTASG 364
Query: 484 APKVKAMELIDELEVNRRGPYSGGFGGVSFTGDMDIALALRTMVFQTGTRYDTMYSYKDA 543
PK +E I L+ RG YSG +S G +D AL LR +Q G R
Sbjct: 365 IPKAAGVEAIFRLDECPRGLYSGAVVMLSADGGLDAALTLRA-AYQVGGR---------- 413
Query: 544 RKRREWVAYLQAGAGIV 560
+L+AGAGI+
Sbjct: 414 -------TWLRAGAGII 423
>pdb|3LOG|A Chain A, Crystal Structure Of Mbti From Mycobacterium Tuberculosis
pdb|3LOG|B Chain B, Crystal Structure Of Mbti From Mycobacterium Tuberculosis
pdb|3LOG|C Chain C, Crystal Structure Of Mbti From Mycobacterium Tuberculosis
pdb|3LOG|D Chain D, Crystal Structure Of Mbti From Mycobacterium Tuberculosis
pdb|3VEH|A Chain A, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor Methylamt
pdb|3VEH|B Chain B, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor Methylamt
pdb|3VEH|C Chain C, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor Methylamt
pdb|3VEH|D Chain D, Structure Of A M. Tuberculosis Salicylate Synthase, Mbti,
In Complex With An Inhibitor Methylamt
Length = 451
Score = 95.5 bits (236), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 82/257 (31%), Positives = 113/257 (43%), Gaps = 21/257 (8%)
Query: 306 AYKNAVLEAKEHIQAGDIFQIVLSQRFERRTFADPFEV-YRALRVVNPSPYMTYLQARGC 364
++ V A + I AG +++LS+ E FA F + YR R N LQ G
Sbjct: 188 GFRRRVAVAVDEIAAGRYHKVILSRCVEV-PFAIDFPLTYRLGRRHNTPVRSFLLQLGGI 246
Query: 365 ILVASSPEILTRVKKNKIV-NRPLAGTVRRGRTTEEDEMLETQLLKDAKQCAEHVMLVDL 423
+ SPE++T V+ + +V PLAGT GR D + L ++K+ EH + V
Sbjct: 247 RALGYSPELVTAVRADGVVITEPLAGTRALGRGPAIDRLARDDLESNSKEIVEHAISVRS 306
Query: 424 GRNDVGKVARSGSVKVEKLMNVERYSHVMHISSTITGELQDRLSCWDALRAALPVGTVSG 483
++ +A GS V M V V H+ STI L AL A P T SG
Sbjct: 307 SLEEITDIAEPGSAAVIDFMTVRERGSVQHLGSTIRARLDPSSDRMAALEALFPAVTASG 366
Query: 484 APKVKAMELIDELEVNRRGPYSGGFGGVSFTGDMDIALALRTMVFQTGTRYDTMYSYKDA 543
PK +E I L+ RG YSG +S G +D AL LR +Q G R
Sbjct: 367 IPKAAGVEAIFRLDECPRGLYSGAVVMLSADGGLDAALTLRA-AYQVGGR---------- 415
Query: 544 RKRREWVAYLQAGAGIV 560
+L+AGAGI+
Sbjct: 416 -------TWLRAGAGII 425
>pdb|3GSE|A Chain A, Crystal Structure Of Menaquinone-specific Isochorismate
Synthase From Yersinia Pestis Co92
Length = 458
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 91/335 (27%), Positives = 147/335 (43%), Gaps = 44/335 (13%)
Query: 254 VRLDQHSSVQKAYAEGLEHLEKLVARK---VITRSIDLHTHHFGPPLKKSNMTSEAYKNA 310
+ L +S+QK + + +++L+A + V+ I +H G P ++N
Sbjct: 146 LNLSSETSLQKDALQAITFIDQLMAARALPVLNARIQHSSHTPGYP---------QWRNL 196
Query: 311 VLEAKEHIQAGDIFQIVLSQRFERRTFADPFEV---YRALRVVNPSPY--MTYLQARGCI 365
+ +A I+ + ++VL+ R T P A R VN Y M R
Sbjct: 197 IQQALNDIEQQKLDKVVLA-RTTTLTLNKPLSCAAFMAASRQVNHRCYHFMLRFDDRQAF 255
Query: 366 LVASSPEILTRVKKNKIVNRPLAGTVRRGRTTEEDEMLETQLLKDAKQCAEHVMLVDLGR 425
L SSPE L ++ + LAGTV + + +L L+ D K E++++VD
Sbjct: 256 L-GSSPERLYLRQQLHLETEALAGTVSNLDSDPQAAVLADWLMHDEKNQRENLLVVD--- 311
Query: 426 NDVGKVARSGSVKVEKLM-NVERYSHVMHISSTITGELQDRLSCWDALRAALPVGTVSGA 484
D+ + + G V+ + + R V H+ I +L R S D L+ P V+G
Sbjct: 312 -DICQRLQGGVTAVDVMPPEIIRLRKVQHLRRRICAQL-SRASDTDCLQRLQPTAAVAGL 369
Query: 485 PKVKAMELIDELEVNRRGPYSGGFGGVSFTGDMDIALALRTMVFQTGTRYDTMYSYKDAR 544
P+ A + I + E+ RG Y+G G +S + ++ALR+ R D
Sbjct: 370 PREAARQFIAKHELFSRGWYAGSAGYLSLK-RTEFSVALRS------ARVDGQQ------ 416
Query: 545 KRREWVAYLQAGAGIVADSDPDDEHRECQNKAAGL 579
+L AGAGIVA SD + E +E NK+AGL
Sbjct: 417 ------IHLYAGAGIVAGSDAEQEWQEIDNKSAGL 445
>pdb|3OS6|A Chain A, Crystal Structure Of Putative
2,3-Dihydroxybenzoate-Specific Isochorismate Synthase,
Dhbc From Bacillus Anthracis.
pdb|3OS6|B Chain B, Crystal Structure Of Putative
2,3-Dihydroxybenzoate-Specific Isochorismate Synthase,
Dhbc From Bacillus Anthracis.
pdb|3OS6|C Chain C, Crystal Structure Of Putative
2,3-Dihydroxybenzoate-Specific Isochorismate Synthase,
Dhbc From Bacillus Anthracis.
pdb|3OS6|D Chain D, Crystal Structure Of Putative
2,3-Dihydroxybenzoate-Specific Isochorismate Synthase,
Dhbc From Bacillus Anthracis
Length = 399
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 76/295 (25%), Positives = 126/295 (42%), Gaps = 29/295 (9%)
Query: 305 EAYKNAVLEAKEHIQAGDIFQIVLSQRFERRTFA--DPFEVYRALRVVNPSPYMTYLQ-- 360
E Y V + E I+ GD+ +IVLS+ + ++ D ++ R L N Y +
Sbjct: 122 EVYXKGVKQGIEKIKDGDLKKIVLSRSLDVKSSGKIDKQKLLRELAEHNKHGYTFAVNLP 181
Query: 361 ----ARGCILVASSPEILTRVKKNKIVNRPLAGTVRRGRTTEEDEMLETQLLKDAKQCAE 416
L+ +SPE+L ++++ PLAG+ R ED+ +LL K E
Sbjct: 182 KDENENSKTLIGASPELLVSRHGXQVISNPLAGSRPRSDDPVEDKRRAEELLSSPKDLHE 241
Query: 417 HVMLVDLGRNDVGKVARSGSVKVEKLMNVERYSHVMHISSTITGELQDRLSCWDALRAAL 476
H ++V+ + ++ V + +V H+S+ + GEL++ + L AL
Sbjct: 242 HAVVVEAVAAALRPYCH--TLYVPEKPSVIHSEAXWHLSTEVKGELKNPNTSSLELAIAL 299
Query: 477 -PVGTVSGAPKVKAMELIDELEVNRRGPYSGGFGGVSFTGDMDIALALRTMVFQTGTRYD 535
P V G P +A E I ++E R ++G G GD + + +R Q T
Sbjct: 300 HPTPAVCGTPXEEAREAIQKIEPFDREFFTGXLGWSDLNGDGEWIVTIRCAEVQENT--- 356
Query: 536 TMYSYKDARKRREWVAYLQAGAGIVADSDPDDEHRECQNKAAGLARAIDLAESAF 590
L AGAG+VA+S P+DE E K +A+ L +S+
Sbjct: 357 ---------------LRLYAGAGVVAESKPEDELAETSAKFQTXLKALGLNDSSL 396
>pdb|2EUA|A Chain A, Structure And Mechanism Of Menf, The Menaquinone-Specific
Isochorismate Synthase From Escherichia Coli
pdb|2EUA|B Chain B, Structure And Mechanism Of Menf, The Menaquinone-Specific
Isochorismate Synthase From Escherichia Coli
pdb|3BZM|A Chain A, Crystal Structure Of Open Form Of Menaquinone-Specific
Isochorismate Synthase, Menf
pdb|3BZN|A Chain A, Crystal Structure Of Open Form Of Menaquinone-Specific
Isochorismate Synthase, Menf
Length = 431
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 75/273 (27%), Positives = 118/273 (43%), Gaps = 34/273 (12%)
Query: 314 AKEHIQAGDIFQIVLSQRFERRTFADPFEVYRAL---RVVNPSPYMTYLQARG-CILVAS 369
A + I G++ ++VL+ R FA P + R +N + Y Y+ G + S
Sbjct: 179 ATKTIAEGELDKVVLA-RATDLHFASPVNAAAMMAASRRLNLNCYHFYMAFDGENAFLGS 237
Query: 370 SPEILTRVKKNKIVNRPLAGTVRRGRTTEEDEMLETQLLKDAKQCAEHVMLVDLGRNDVG 429
SPE L R + + LAGTV ++ + L L+ D K E++++V+ D+
Sbjct: 238 SPERLWRRRDKALRTEALAGTVANNPDDKQAQQLGEWLMADDKNQRENMLVVE----DIC 293
Query: 430 KVARSGSVKVEKLM-NVERYSHVMHISSTITGELQ--DRLSCWDALRAALPVGTVSGAPK 486
+ ++ + ++ L V R V H+ I L D + C L+ P V+G P+
Sbjct: 294 QRLQADTQTLDVLPPQVLRLRKVQHLRRCIWTSLNKADDVICLHQLQ---PTAAVAGLPR 350
Query: 487 VKAMELIDELEVNRRGPYSGGFGGVSFTGDMDIALALRTMVFQTGTRYDTMYSYKDARKR 546
A + I E R Y+G G +S + ++LR+
Sbjct: 351 DLARQFIARHEPFTREWYAGSAGYLSLQ-QSEFCVSLRSAKISGN--------------- 394
Query: 547 REWVAYLQAGAGIVADSDPDDEHRECQNKAAGL 579
V L AGAGIV SDP+ E +E NKAAGL
Sbjct: 395 ---VVRLYAGAGIVRGSDPEQEWQEIDNKAAGL 424
>pdb|3HWO|A Chain A, Crystal Structure Of Escherichia Coli
Enterobactin-Specific Isochorismate Synthase Entc In
Complex With Isochorismate
pdb|3HWO|B Chain B, Crystal Structure Of Escherichia Coli
Enterobactin-Specific Isochorismate Synthase Entc In
Complex With Isochorismate
Length = 394
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 98/240 (40%), Gaps = 29/240 (12%)
Query: 351 NPSPYMTYLQ-ARGCILVASSPEILTRVKKNKIVNRPLAGTVRRGRTTEEDEMLE----T 405
NP Y ++ A G +L+ +SPE+L R + + PLAG+ RR + DE+L+
Sbjct: 178 NPVSYNFHVPLADGGVLLGASPELLLRKDGERFSSIPLAGSARR----QPDEVLDREAGN 233
Query: 406 QLLKDAKQCAEHVMLVDLGRNDVGKVARSGSVKVEKLMNVERYSHVMHISSTITGELQDR 465
+LL K EH ++ + + + RS + V + + H+++ G+ +
Sbjct: 234 RLLASEKDRHEHELVTQAMKEVLRE--RSSELHVPSSPQLITTPTLWHLATPFEGKANSQ 291
Query: 466 LSCWDALRAALPVGTVSGAPKVKAMELIDELEVNRRGPYSGGFGGVSFTGDMDIALALRT 525
+ P +SG P A ++I ELE R + G G G+ + + +R
Sbjct: 292 ENALTLACLLHPTPALSGFPHQAATQVIAELEPFDRELFGGIVGWCDSEGNGEWVVTIRC 351
Query: 526 MVFQTGTRYDTMYSYKDARKRREWVAYLQAGAGIVADSDPDDEHRECQNKAAGLARAIDL 585
K RE L AGAGIV S P E RE K + + L
Sbjct: 352 A------------------KLRENQVRLFAGAGIVPASSPLGEWRETGVKLSTMLNVFGL 393
>pdb|3R74|A Chain A, Crystal Structure Of 2-Amino-2-Desoxyisochorismate
Synthase (Adic) Synthase Phze From Burkholderia Lata 383
pdb|3R74|B Chain B, Crystal Structure Of 2-Amino-2-Desoxyisochorismate
Synthase (Adic) Synthase Phze From Burkholderia Lata 383
Length = 645
Score = 35.8 bits (81), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 88/225 (39%), Gaps = 20/225 (8%)
Query: 366 LVASSPEILTRVKKNKIVNRPLAGTVRRGRTTEEDEMLETQLLKDAKQCAEHVMLVDLGR 425
V ++PE + + P++GT R ++ + + L D K+ E M++D
Sbjct: 197 FVGATPERHLTLHEGCATMNPISGTYRYPQSGPTIDGINA-FLGDRKESDELYMVLDEEL 255
Query: 426 NDVGKVARSGS-VKVEKLMNVERYSHVMHISSTITGELQDRLSCWDALRAALPVGTVSGA 484
+ ++ +G V L + R +H + I G + D LR + TV+G+
Sbjct: 256 KMMARICPAGGQVTGPHLREMARLAHTEYF---IVGHTE--ADVRDLLRETMFAPTVTGS 310
Query: 485 PKVKAMELIDELEVNRRGPYSGGFGGVSFTGDMDIALALRTMVFQTGTRYDTMYSYKDAR 544
P A +I E RG YSG IA AL + G D+ + A
Sbjct: 311 PIESATRVIARHERAGRGYYSG------------IA-ALIGRDARGGRTLDSAILIRTAE 357
Query: 545 KRREWVAYLQAGAGIVADSDPDDEHRECQNKAAGLARAIDLAESA 589
R + G+ +V SD E E K A L+ A D E+
Sbjct: 358 IDRAGHVRIGVGSTLVRHSDAVSEVMETHAKVAALSNAFDPPEAG 402
>pdb|3R75|A Chain A, Crystal Structure Of 2-Amino-2-Desoxyisochorismate
Synthase (Adic) Synthase Phze From Burkholderia Lata 383
In Complex With Benzoate, Pyruvate, Glutamine And
Contaminating Zn2+
pdb|3R75|B Chain B, Crystal Structure Of 2-Amino-2-Desoxyisochorismate
Synthase (Adic) Synthase Phze From Burkholderia Lata 383
In Complex With Benzoate, Pyruvate, Glutamine And
Contaminating Zn2+
pdb|3R76|A Chain A, Crystal Structure Of 2-Amino-2-Desoxyisochorismate
Synthase (Adic) Synthase Phze From Burkholderia Lata 383
In Complex With Benzoate, Pyruvate And Glutamine
pdb|3R76|B Chain B, Crystal Structure Of 2-Amino-2-Desoxyisochorismate
Synthase (Adic) Synthase Phze From Burkholderia Lata 383
In Complex With Benzoate, Pyruvate And Glutamine
Length = 645
Score = 35.8 bits (81), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 88/225 (39%), Gaps = 20/225 (8%)
Query: 366 LVASSPEILTRVKKNKIVNRPLAGTVRRGRTTEEDEMLETQLLKDAKQCAEHVMLVDLGR 425
V ++PE + + P++GT R ++ + + L D K+ E M++D
Sbjct: 197 FVGATPERHLTLHEGCATMNPISGTYRYPQSGPTIDGINA-FLGDRKESDELYMVLDEEL 255
Query: 426 NDVGKVARSGS-VKVEKLMNVERYSHVMHISSTITGELQDRLSCWDALRAALPVGTVSGA 484
+ ++ +G V L + R +H + I G + D LR + TV+G+
Sbjct: 256 KMMARICPAGGQVTGPHLREMARLAHTEYF---IVGHTE--ADVRDLLRETMFAPTVTGS 310
Query: 485 PKVKAMELIDELEVNRRGPYSGGFGGVSFTGDMDIALALRTMVFQTGTRYDTMYSYKDAR 544
P A +I E RG YSG IA AL + G D+ + A
Sbjct: 311 PIESATRVIARHERAGRGYYSG------------IA-ALIGRDARGGRTLDSAILIRTAE 357
Query: 545 KRREWVAYLQAGAGIVADSDPDDEHRECQNKAAGLARAIDLAESA 589
R + G+ +V SD E E K A L+ A D E+
Sbjct: 358 IDRAGHVRIGVGSTLVRHSDAVSEVMETHAKVAALSNAFDPPEAG 402
>pdb|3S88|H Chain H, Crystal Structure Of Sudan Ebolavirus Glycoprotein (Strain
Gulu) Bound To 16f6
Length = 220
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 505 SGGFGGVSFTGDMDIALALRTMVFQTGTRYDTMYSYKDARKRREWVAYLQAGAG 558
SGG G V+ G + ++ A F YD + ++ KR EWVAY+ +G G
Sbjct: 7 SGG-GLVTPGGSLKLSCAASGFAFN---YYDMFWVRQNTEKRLEWVAYINSGGG 56
>pdb|3VE0|A Chain A, Crystal Structure Of Sudan Ebolavirus Glycoprotein (Strain
Boniface) Bound To 16f6
Length = 220
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 505 SGGFGGVSFTGDMDIALALRTMVFQTGTRYDTMYSYKDARKRREWVAYLQAGAG 558
SGG G V+ G + ++ A F YD + ++ KR EWVAY+ +G G
Sbjct: 7 SGG-GLVTPGGSLKLSCAASGFAFN---YYDMFWVRQNTEKRLEWVAYINSGGG 56
>pdb|1F4W|H Chain H, Crystal Structure Of An Anti-Carbohydrate Antibody
Directed Against Vibrio Cholerae O1 In Complex With
Antigen
pdb|1F4X|H Chain H, Crystal Structure Of An Anti-Carbohydrate Antibody
Directed Against Vibrio Cholerae O1 In Complex With
Antigen
pdb|1F4Y|H Chain H, Crystal Structure Of An Anti-Carbohydrate Antibody
Directed Against Vibrio Cholerae O1 In Complex With
Antigen
Length = 216
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 505 SGGFGGVSFTGDMDIALALRTMVFQTGTRYDTMYSYKDARKRREWVAYLQAGAG 558
SGG G V+ G + ++ A VF T YD + + KR EWVA++ +G G
Sbjct: 7 SGG-GLVTPGGSLRLSCAASGYVFST---YDMSWVRQTPEKRLEWVAFISSGGG 56
>pdb|1G0U|M Chain M, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|1 Chain 1, A Gated Channel Into The Proteasome Core Particle
pdb|2ZCY|M Chain M, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|0 Chain 0, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|M Chain M, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|0 Chain 0, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3NZJ|M Chain M, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|1 Chain 1, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|M Chain M, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|1 Chain 1, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|M Chain M, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|1 Chain 1, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3MG6|M Chain M, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|1 Chain 1, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|M Chain M, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|1 Chain 1, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|M Chain M, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|1 Chain 1, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|4B4T|7 Chain 7, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 266
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 52/112 (46%), Gaps = 8/112 (7%)
Query: 268 EGLEHLEKLVARKVITRSIDLHTHHFGPPLKKSNMTSEAYKNAVLEAKEHIQAGDIFQIV 327
G+E L + V+ S D+ L K +T AY N + +A+E ++ IF+ +
Sbjct: 70 NGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLADAEEALEPSYIFEYL 129
Query: 328 LSQRFERRTFADPFEVYRALRVV----NPSPYMTYLQARGCILVASSPEILT 375
+ ++RR+ +P ++ A+ V N ++ Y+ G SSP + T
Sbjct: 130 ATVMYQRRSKMNP--LWNAIIVAGVQSNGDQFLRYVNLLGVTY--SSPTLAT 177
>pdb|1RYP|N Chain N, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|2 Chain 2, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|M Chain M, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|1 Chain 1, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1FNT|N Chain N, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|BB Chain b, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1JD2|M Chain M, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|T Chain T, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1Z7Q|N Chain N, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|BB Chain b, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2F16|M Chain M, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|1 Chain 1, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|M Chain M, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|1 Chain 1, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|M Chain M, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|1 Chain 1, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|M Chain M, Proteasome Inhibition By Fellutamide B
pdb|3D29|1 Chain 1, Proteasome Inhibition By Fellutamide B
pdb|3E47|M Chain M, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|1 Chain 1, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|M Chain M, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|1 Chain 1, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|M Chain M, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|1 Chain 1, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|M Chain M, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|1 Chain 1, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|M Chain M, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|1 Chain 1, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|M Chain M, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|1 Chain 1, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|M Chain M, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|1 Chain 1, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|1VSY|N Chain N, Proteasome Activator Complex
pdb|1VSY|2 Chain 2, Proteasome Activator Complex
pdb|3L5Q|R Chain R, Proteasome Activator Complex
pdb|3L5Q|4 Chain 4, Proteasome Activator Complex
pdb|3MG4|M Chain M, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|1 Chain 1, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|M Chain M, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|1 Chain 1, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3OKJ|M Chain M, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|1 Chain 1, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|M Chain M, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|1 Chain 1, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|M Chain M, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|1 Chain 1, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|M Chain M, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|1 Chain 1, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|M Chain M, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|1 Chain 1, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3UN4|M Chain M, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|AA Chain a, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|M Chain M, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|AA Chain a, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3SDI|M Chain M, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|1 Chain 1, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|M Chain M, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|1 Chain 1, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|M Chain M, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|AA Chain a, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4G4S|N Chain N, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4FZC|M Chain M, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|AA Chain a, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|M Chain M, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|AA Chain a, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4INR|M Chain M, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|AA Chain a, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|M Chain M, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|AA Chain a, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|M Chain M, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|AA Chain a, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 233
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 52/112 (46%), Gaps = 8/112 (7%)
Query: 268 EGLEHLEKLVARKVITRSIDLHTHHFGPPLKKSNMTSEAYKNAVLEAKEHIQAGDIFQIV 327
G+E L + V+ S D+ L K +T AY N + +A+E ++ IF+ +
Sbjct: 37 NGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLADAEEALEPSYIFEYL 96
Query: 328 LSQRFERRTFADPFEVYRALRVV----NPSPYMTYLQARGCILVASSPEILT 375
+ ++RR+ +P ++ A+ V N ++ Y+ G SSP + T
Sbjct: 97 ATVMYQRRSKMNP--LWNAIIVAGVQSNGDQFLRYVNLLGV--TYSSPTLAT 144
>pdb|2ZUQ|C Chain C, Crystal Structure Of Dsbb-Fab Complex
pdb|2ZUQ|F Chain F, Crystal Structure Of Dsbb-Fab Complex
pdb|2LTQ|C Chain C, High Resolution Structure Of Dsbb C41s By Joint
Calculation With Solid-state Nmr And X-ray Data
pdb|2LTQ|F Chain F, High Resolution Structure Of Dsbb C41s By Joint
Calculation With Solid-state Nmr And X-ray Data
Length = 221
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 505 SGGFGGVSFTGDMDIALALRTMVFQTGTRYDTMYSYKDARKRREWVAYLQAGAG 558
SGG G V G + ++ A F + YD + + KR EWVAY+ +G G
Sbjct: 7 SGG-GLVKPGGSLKLSCAASGFAFSS---YDMSWVRQTPEKRLEWVAYISSGGG 56
>pdb|1P7T|B Chain B, Structure Of Escherichia Coli Malate Synthase
G:pyruvate:acetyl- Coenzyme A Abortive Ternary Complex
At 1.95 Angstrom Resolution
Length = 731
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 23/137 (16%)
Query: 148 VKDNNVTIMDHEKGSLVEEVVDDPMEIPRKISEDWKPQIIDELPEAFCGGWVGYFSYDTV 207
V+ I E + E ++DD + IP + +W Q I + + G +GY V
Sbjct: 553 VQSVQANIAQTEFNAEFEPLLDDLLTIPVAENANWSAQEIQQELDNNVQGILGY----VV 608
Query: 208 RYVEKKKLPFSKAPHDDRSLADIHLGLYNDVLVFDHVEKKV---YVIHWVRLDQHSSVQK 264
R+VE + + SK P DIH N L+ D ++ ++ +W+R H + K
Sbjct: 609 RWVE-QGIGXSKVP-------DIH----NVALMEDRATLRISSQHIANWLR---HGILTK 653
Query: 265 AYAEG-LEHLEKLVARK 280
+ LE++ K+V ++
Sbjct: 654 EQVQASLENMAKVVDQQ 670
>pdb|1P7T|A Chain A, Structure Of Escherichia Coli Malate Synthase
G:pyruvate:acetyl- Coenzyme A Abortive Ternary Complex
At 1.95 Angstrom Resolution
Length = 731
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 23/137 (16%)
Query: 148 VKDNNVTIMDHEKGSLVEEVVDDPMEIPRKISEDWKPQIIDELPEAFCGGWVGYFSYDTV 207
V+ I E + E ++DD + IP + +W Q I + + G +GY V
Sbjct: 553 VQSVQANIAQTEFNAEFEPLLDDLLTIPVAENANWSAQEIQQELDNNVQGILGY----VV 608
Query: 208 RYVEKKKLPFSKAPHDDRSLADIHLGLYNDVLVFDHVEKKV---YVIHWVRLDQHSSVQK 264
R+VE + + SK P DIH N L+ D ++ ++ +W+R H + K
Sbjct: 609 RWVE-QGIGXSKVP-------DIH----NVALMEDRATLRISSQHIANWLR---HGILTK 653
Query: 265 AYAEG-LEHLEKLVARK 280
+ LE++ K+V ++
Sbjct: 654 EQVQASLENMAKVVDQQ 670
>pdb|1Y8B|A Chain A, Solution Nmr-Derived Global Fold Of Malate Synthase G From
E.Coli
Length = 731
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 23/137 (16%)
Query: 148 VKDNNVTIMDHEKGSLVEEVVDDPMEIPRKISEDWKPQIIDELPEAFCGGWVGYFSYDTV 207
V+ I E + E ++DD + IP + +W Q I + + G +GY V
Sbjct: 553 VQSVQANIAQTEFNAEFEPLLDDLLTIPVAENANWSAQEIQQELDNNVQGILGY----VV 608
Query: 208 RYVEKKKLPFSKAPHDDRSLADIHLGLYNDVLVFDHVEKKV---YVIHWVRLDQHSSVQK 264
R+VE + + SK P DIH N L+ D ++ ++ +W+R H + K
Sbjct: 609 RWVE-QGIGCSKVP-------DIH----NVALMEDRATLRISSQHIANWLR---HGILTK 653
Query: 265 AYAEG-LEHLEKLVARK 280
+ LE++ K+V ++
Sbjct: 654 EQVQASLENMAKVVDQQ 670
>pdb|2JQX|A Chain A, Solution Structure Of Malate Synthase G From Joint
Refinement Against Nmr And Saxs Data
Length = 723
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 23/137 (16%)
Query: 148 VKDNNVTIMDHEKGSLVEEVVDDPMEIPRKISEDWKPQIIDELPEAFCGGWVGYFSYDTV 207
V+ I E + E ++DD + IP + +W Q I + + G +GY V
Sbjct: 553 VQSVQANIAQTEFNAEFEPLLDDLLTIPVAENANWSAQEIQQELDNNVQGILGY----VV 608
Query: 208 RYVEKKKLPFSKAPHDDRSLADIHLGLYNDVLVFDHVEKKV---YVIHWVRLDQHSSVQK 264
R+VE + + SK P DIH N L+ D ++ ++ +W+R H + K
Sbjct: 609 RWVE-QGIGCSKVP-------DIH----NVALMEDRATLRISSQHIANWLR---HGILTK 653
Query: 265 AYAEG-LEHLEKLVARK 280
+ LE++ K+V ++
Sbjct: 654 EQVQASLENMAKVVDQQ 670
>pdb|3IFA|A Chain A, Human Muscle Fructose-1,6-Bisphosphatase E69q Mutant In
Complex With Amp
pdb|3IFA|B Chain B, Human Muscle Fructose-1,6-Bisphosphatase E69q Mutant In
Complex With Amp
pdb|3IFA|C Chain C, Human Muscle Fructose-1,6-Bisphosphatase E69q Mutant In
Complex With Amp
pdb|3IFA|D Chain D, Human Muscle Fructose-1,6-Bisphosphatase E69q Mutant In
Complex With Amp
pdb|3IFC|A Chain A, Human Muscle Fructose-1,6-Bisphosphatase E69q Mutant In
Complex With Amp And Alpha Fructose-6-Phosphate
pdb|3IFC|B Chain B, Human Muscle Fructose-1,6-Bisphosphatase E69q Mutant In
Complex With Amp And Alpha Fructose-6-Phosphate
pdb|3IFC|C Chain C, Human Muscle Fructose-1,6-Bisphosphatase E69q Mutant In
Complex With Amp And Alpha Fructose-6-Phosphate
pdb|3IFC|D Chain D, Human Muscle Fructose-1,6-Bisphosphatase E69q Mutant In
Complex With Amp And Alpha Fructose-6-Phosphate
Length = 338
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 197 GWVGYFSYDTVRYVEKKKLPF-SKAPHDDR----SLADIHLGL-YNDVLVFDHVEK 246
G+ YF T YV+KKK P AP+ R +AD+H L Y + ++ +K
Sbjct: 214 GYAKYFDAATTEYVQKKKFPEDGSAPYGARYVGSMVADVHRTLVYGGIFLYPANQK 269
>pdb|2KH2|B Chain B, Solution Structure Of A Scfv-Il-1b Complex
Length = 254
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 505 SGGFGGVSFTGDMDIALALRTMVFQTGTRYDTMYSYKDARKRREWVAYLQAGAG 558
SGG G V G + ++ A F +RYD + + KR EWVAY+ +G G
Sbjct: 136 SGG-GLVQPGGSLRLSCAASGFDF---SRYDMSWVRQAPGKRLEWVAYISSGGG 185
>pdb|2QHR|H Chain H, Crystal Structure Of The 13f6-1-2 Fab Fragment Bound To
Its Ebola Virus Glycoprotein Peptide Epitope
Length = 222
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 505 SGGFGGVSFTGDMDIALALRTMVFQTGTRYDTMYSYKDARKRREWVAYLQAGAGIVADSD 564
SGG G V G + ++ A F + YD + + KR EWVAY+ G G D
Sbjct: 7 SGG-GLVKPGGSLKLSCAASGFAFSS---YDMSWVRQTPEKRLEWVAYISRGGGYTYYPD 62
>pdb|1SEQ|H Chain H, Fab Mnac13
Length = 225
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 505 SGGFGGVSFTGDMDIALALRTMVFQTGTRYDTMYSYKDARKRREWVAYLQAGAG 558
SGG G V G + ++ A F T Y ++ + K+ EWVAY+ G G
Sbjct: 7 SGG-GLVQPGGSLKLSCAASGFTFST---YTMSWARQTPEKKLEWVAYISKGGG 56
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,518,748
Number of Sequences: 62578
Number of extensions: 680030
Number of successful extensions: 1580
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1526
Number of HSP's gapped (non-prelim): 37
length of query: 592
length of database: 14,973,337
effective HSP length: 104
effective length of query: 488
effective length of database: 8,465,225
effective search space: 4131029800
effective search space used: 4131029800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)