RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 007699
(592 letters)
>1qdl_A Protein (anthranilate synthase (TRPE-subunit)); tryptophan
biosynthesis, glutamine amidotransferase, allosteric
interaction, lyase; 2.50A {Sulfolobus solfataricus}
SCOP: d.161.1.1
Length = 422
Score = 586 bits (1514), Expect = 0.0
Identities = 158/497 (31%), Positives = 235/497 (47%), Gaps = 77/497 (15%)
Query: 89 LYRCIFSDHLTPVVAYRCLVQEDDREAPSFLFESVEPGVRVSNVGRYSVVGAQPVMEVIV 148
+ S+ +P ++C+ ++ + L ES+ RYSV+ +
Sbjct: 2 MEVHPISEFASPFEVFKCIERD---FKVAGLLESIGGP---QYKARYSVIAWSTNGYL-- 53
Query: 149 KDNNVTIMDHEKGSLVEEVVDDPMEIPRKISEDWKPQIIDELPEAFCGGWVGYFSYDTVR 208
++ DDP+ I +D K ++P F GG +GY SYD VR
Sbjct: 54 -----------------KIHDDPVNILNGYLKDLKL---ADIPGLFKGGMIGYISYDAVR 93
Query: 209 YVEKKKLPFSKAPHDDRSLADIHLGLYNDVLVFDHVEKKVYVIHWVRLDQHSSVQKAYAE 268
+ EK + ++++++DH E KVYV +
Sbjct: 94 FWEKIR----DLKPAAEDWPYAEFFTPDNIIIYDHNEGKVYVN----------ADLSSVG 139
Query: 269 GLEHLEKLVARKVITRSIDLHTHHFGPPLKKSNMTSEAYKNAVLEAKEHIQAGDIFQIVL 328
G + + ++ +Y+ V E+ E+I++G IFQ+VL
Sbjct: 140 GCGDIGEFKVSFY-----------------DESLNKNSYERIVSESLEYIRSGYIFQVVL 182
Query: 329 SQRFERRTFADPFEVYRALRVVNPSPYMTYLQARGCILVASSPEILTRVKKNKIVNRPLA 388
S+ + DP +Y LR +NPSPYM YL+ L+ SSPE+L RV+ N + P+A
Sbjct: 183 SRFYRYIFSGDPLRIYYNLRRINPSPYMFYLKFDEKYLIGSSPELLFRVQDNIVETYPIA 242
Query: 389 GTVRRGRTTEEDEMLETQLLKDAKQCAEHVMLVDLGRNDVGKVARSGSVKVEKLMNVERY 448
GT RG EED LE +L+ K AEH+MLVDL RND+GKV G+VKV +LM VE+Y
Sbjct: 243 GTRPRGADQEEDLKLELELMNSEKDKAEHLMLVDLARNDLGKVCVPGTVKVPELMYVEKY 302
Query: 449 SHVMHISSTITGELQDRLSCWDALRAALPVGTVSGAPKVKAMELIDELEVNRRGPYSGGF 508
SHV HI S + G L+ + + + L A P GTVSGAPK AM +I+ LE +RGPY+G
Sbjct: 303 SHVQHIVSKVIGTLKKKYNALNVLSATFPAGTVSGAPKPMAMNIIETLEEYKRGPYAGAV 362
Query: 509 GGVSFTGDMDIALALRTMVFQTGTRYDTMYSYKDARKRREWVAYLQAGAGIVADSDPDDE 568
G +S G+ + A+A+RT + AGAGIV DS+P+ E
Sbjct: 363 GFISADGNAEFAIAIRTAFLNKEL------------------LRIHAGAGIVYDSNPESE 404
Query: 569 HRECQNKAAGLARAIDL 585
+ E ++K L AI +
Sbjct: 405 YFETEHKLKALKTAIGV 421
>1k0e_A P-aminobenzoate synthase component I; aminodeoxychorismate
synthase, chorismate, glutamine, tryptophan, PABA
synthase, lyase; HET: TRP; 2.00A {Escherichia coli}
SCOP: d.161.1.1 PDB: 1k0g_A*
Length = 453
Score = 573 bits (1480), Expect = 0.0
Identities = 143/501 (28%), Positives = 237/501 (47%), Gaps = 54/501 (10%)
Query: 86 LVPLYRCIFSDHLTPVVAYRCLVQEDDREAPSFLFESVEPGVRVSNVGRYSVVGAQPVME 145
L P + + L + L S R+ +V A+P+
Sbjct: 4 LSPAVITLLWRQDAAEFYFSRLSHLP----WAMLLHSGYAD---HPYSRFDIVVAEPICT 56
Query: 146 VIVKDNNVTIMDHEKGSLVEEVVDDPMEIPRKISEDWK--PQIIDELPEAFCGGWVGYFS 203
+ + + EK DDP+++ +++ + P ++LP F GG +G F
Sbjct: 57 LTTFGKETVVSESEK---RTTTTDDPLQVLQQVLDRADIRPTHNEDLP--FQGGALGLFG 111
Query: 204 YDTVRYVEKKKLPFSKAPHDDRSLADIHLGLYNDVLVFDHVEKKVYVIHWVRLDQHSSVQ 263
YD R E LP + D L D+ +G+Y+ L+ DH V ++
Sbjct: 112 YDLGRRFES--LP--EIAEQDIVLPDMAVGIYDWALIVDHQRHTVSLL------------ 155
Query: 264 KAYAEGLEHLEKLVARKVITRSIDLHTHHFGPPLKKSNMTSEAYKNAVLEAKEHIQAGDI 323
++ + L +++ + T + +SNMT E Y + +E++ +GD
Sbjct: 156 -SHNDVNARRAWLESQQFSPQEDFTLTSDW-----QSNMTREQYGEKFRQVQEYLHSGDC 209
Query: 324 FQIVLSQRFERRTFADPFEVYRALRVVNPSPYMTYLQARGCILVASSPEILTRVKKNKIV 383
+Q+ L+QRF D ++ + L N +P+ +L+ +++ SPE ++I
Sbjct: 210 YQVNLAQRFHATYSGDEWQAFLQLNQANRAPFSAFLRLEQGAILSLSPERFILCDNSEIQ 269
Query: 384 NRPLAGTVRRGRTTEEDEMLETQLLKDAKQCAEHVMLVDLGRNDVGKVARSGSVKVEKLM 443
RP+ GT+ R +ED +L AK AE++M+VDL RND+G+VA +GSVKV +L
Sbjct: 270 TRPIKGTLPRLPDPQEDSKQAVKLANSAKDRAENLMIVDLMRNDIGRVAVAGSVKVPELF 329
Query: 444 NVERYSHVMHISSTITGELQDRLSCWDALRAALPVGTVSGAPKVKAMELIDELEVNRRGP 503
VE + V H+ STIT +L ++L D LRAA P G+++GAPKV+AME+IDELE RR
Sbjct: 330 VVEPFPAVHHLVSTITAQLPEQLHASDLLRAAFPGGSITGAPKVRAMEIIDELEPQRRNA 389
Query: 504 YSGGFGGVSFTGDMDIALALRTMVFQTGTRYDTMYSYKDARKRREWVAYLQAGAGIVADS 563
+ G G +SF G+MD ++ +RT+ G + AG GIVADS
Sbjct: 390 WCGSIGYLSFCGNMDTSITIRTLTAINGQ------------------IFCSAGGGIVADS 431
Query: 564 DPDDEHRECQNKAAGLARAID 584
+ E++E +K + + ++
Sbjct: 432 QEEAEYQETFDKVNRILKQLE 452
>1i1q_A Anthranilate synthase component I; tryptophan biosynthesis, lyase;
HET: TRP; 1.90A {Salmonella typhimurium} SCOP: d.161.1.1
PDB: 1i7q_A 1i7s_A*
Length = 520
Score = 552 bits (1425), Expect = 0.0
Identities = 148/551 (26%), Positives = 227/551 (41%), Gaps = 81/551 (14%)
Query: 84 ANLVPLYRCIFSD---HLTPVVAYRCLVQEDDREAPSFLFESVEPGVRVSNVGRYSVVGA 140
P + D P + + + + L ES + S S++
Sbjct: 2 QTPKPTLELLTCDAAYRENPTALFHQVCGD---RPATLLLESADID---SKDDLKSLLLV 55
Query: 141 QPVMEVIVKDNNVTI----------MDHEKGSLVEEVVDDPMEIPRKISEDWKPQIIDEL 190
+ + + VTI + +L V +D + R + ++DE
Sbjct: 56 DSALRITALGDTVTIQALSDNGASLLPLLDTALPAGVENDVLPAGRVLRFPPVSPLLDEN 115
Query: 191 PEA-----------------------FCGGWVGYFSYDTVRYVEKKKLPFSKAPHDDRSL 227
+ G F+YD V E LP +
Sbjct: 116 ARLCSLSVFDAFRLLQGVVNIPTQEREAMFFGGLFAYDLVAGFE--ALP---HLEAGNNC 170
Query: 228 ADIHLGLYNDVLVFDHVEKKVYVIHWVRLDQHSSVQKAYAEGLEHLEKLVARKVITRSID 287
D L ++V DH +K + + L L + +T+
Sbjct: 171 PDYCFYLAETLMVIDHQKKSTRIQASLFTASDR----EKQRLNARLAYLSQQ--LTQPAP 224
Query: 288 LHTHHFGPPLK-KSNMTSEAYKNAVLEAKEHIQAGDIFQIVLSQRFERRTFADPFEVYRA 346
P ++ + N + +A+ V + ++ I+AG+IFQ+V S+RF P Y
Sbjct: 225 PLPVTPVPDMRCECNQSDDAFGAVVRQLQKAIRAGEIFQVVPSRRFSLP-CPSPLAAYYV 283
Query: 347 LRVVNPSPYMTYLQARGCILVASSPEILTRVKK--NKIVNRPLAGTVRRGRTT------E 398
L+ NPSPYM ++Q L +SPE + +I P+AGT RGR +
Sbjct: 284 LKKSNPSPYMFFMQDNDFTLFGASPESSLKYDAASRQIEIYPIAGTRPRGRRADGTLDRD 343
Query: 399 EDEMLETQLLKDAKQCAEHVMLVDLGRNDVGKVARSGSVKVEKLMNVERYSHVMHISSTI 458
D +E + D K+ +EH+MLVDL RND+ ++ GS V L V+RYS+VMH+ S +
Sbjct: 344 LDSRIELDMRTDHKELSEHLMLVDLARNDLARICTPGSRYVADLTKVDRYSYVMHLVSRV 403
Query: 459 TGELQDRLSCWDALRAALPVGTVSGAPKVKAMELIDELEVNRRGPYSGGFGGVSFTGDMD 518
GEL+ L A RA + +GT+SGAPKV+AM+LI + E RRG Y G G + GD+D
Sbjct: 404 VGELRHDLDALHAYRACMNMGTLSGAPKVRAMQLIADAEGQRRGSYGGAVGYFTAHGDLD 463
Query: 519 IALALRTMVFQTGTRYDTMYSYKDARKRREWVAYLQAGAGIVADSDPDDEHRECQNKAAG 578
+ +R+ + + G A +QAGAGIV DS P E E +NKA
Sbjct: 464 TCIVIRSALVENGI------------------ATVQAGAGIVLDSVPQSEADETRNKARA 505
Query: 579 LARAIDLAESA 589
+ RAI A A
Sbjct: 506 VLRAIATAHHA 516
>2fn0_A Salicylate synthetase, IRP9; salicylate synthase, siderophore,
transcription; 1.85A {Yersinia enterocolitica} SCOP:
d.161.1.1 PDB: 2fn1_A*
Length = 437
Score = 490 bits (1264), Expect = e-170
Identities = 109/493 (22%), Positives = 179/493 (36%), Gaps = 74/493 (15%)
Query: 95 SDHLTPVVAYRCLVQEDDREAPSFLFESVEPGVRVSNVGRYSV-VGAQPVMEVIVKDNNV 153
L + V E +++E + + G Q + +
Sbjct: 17 EQWLPTISG----VLRQFAEEECYVYE---------RPPCWYLGKGCQARLHINADGTQA 63
Query: 154 TIMDHEKGSLVEEVVDDPMEIPRKISEDWKPQIIDELPEAFCGGWV-GYFSYDTVRYVEK 212
T +D + VD + R + + G V G ++ +
Sbjct: 64 TFIDDAGEQ--KWAVDSIADCAR--------RFMAHPQ--VKGRRVYGQVGFNFAAHARG 111
Query: 213 KKLPFSKAPHDDRSLADIHLGLYNDVLVFDHVEKKVYVIHWVRLDQHSSVQKAYAEGLEH 272
+ + L + + L+F+ VY A+G
Sbjct: 112 I-------AFNAGEWPLLTLTVPREELIFEKGNVTVYA--------------DSADGCRR 150
Query: 273 LEKLVARKVITRSIDLHTHHFGPPLKKSNMTSEAYKNAVLEAKEHIQAGDIFQIVLSQRF 332
L + V T P + + EAYK V A I+ G+ ++++S+
Sbjct: 151 LCEWVKEASTTTQN-------APLAVDTALNGEAYKQQVARAVAEIRRGEYVKVIVSRAI 203
Query: 333 ERRTFADPFEVYRALRVVNPSPYMTYLQARGCILVASSPEILTRVKKNKIVNRPLAGTVR 392
+ D R N + G + SPE++ V NK+V PLAGT
Sbjct: 204 PLPSRIDMPATLLYGRQANTPVRSFMFRQEGREALGFSPELVMSVTGNKVVTEPLAGTRD 263
Query: 393 RGRTTEEDEMLETQLLKDAKQCAEHVMLVDLGRNDVGKVARSGSVKVEKLMNVERYSHVM 452
R E ++ E +LL D+K+ EH++ V ++ V GSV VE LM+V + V
Sbjct: 264 RMGNPEHNKAKEAELLHDSKEVLEHILSVKEAIAELEAVCLPGSVVVEDLMSVRQRGSVQ 323
Query: 453 HISSTITGELQDRLSCWDALRAALPVGTVSGAPKVKAMELIDELEVNRRGPYSGGFGGVS 512
H+ S ++G+L + WDA P T SG PK A+ I ++E R YSG +
Sbjct: 324 HLGSGVSGQLAENKDAWDAFTVLFPSITASGIPKNAALNAIMQIEKTPRELYSGAILLLD 383
Query: 513 FTGDMDIALALRTMVFQTGTRYDTMYSYKDARKRREWVAYLQAGAGIVADSDPDDEHREC 572
D AL LR++ + ++QAGAGI+A S P+ E E
Sbjct: 384 D-TRFDAALVLRSVFQDSQR------------------CWIQAGAGIIAQSTPERELTET 424
Query: 573 QNKAAGLARAIDL 585
+ K A +A + +
Sbjct: 425 REKLASIAPYLMV 437
>3log_A Isochorismate synthase/isochorismate-pyruvate LYA; salicylate,
anthranilate, isochor synthase, isochorismate lyase, ION
transport; 1.73A {Mycobacterium tuberculosis} PDB:
2i6y_A 2g5f_A
Length = 451
Score = 485 bits (1251), Expect = e-168
Identities = 102/509 (20%), Positives = 172/509 (33%), Gaps = 72/509 (14%)
Query: 77 FSEASKRANLVPLYRCIFSDHLTPVVAYRCL-VQEDDREAPSFLFESVEPGVRVSNVGRY 135
S ++ +P+ + P L + +L + G++
Sbjct: 10 TGAVSTASSSIPM-----PAGVNPADLAAELAAVVTESVDEDYLLYECD--------GQW 56
Query: 136 SVVGAQPVMEVIVKDNNVTIMDHEKGSLVEEVVDDPMEIPRKISEDWKPQIIDELPEAFC 195
+ A V + + + ++ ++ P + +D L
Sbjct: 57 VL-AAGVQAMVELDSDELRVIRDGVTR-RQQWSGRPGAALG--------EAVDRLL-LET 105
Query: 196 GGWVGYFSYDTVRYVEKKKLPFSKAPHDDRSLADIHLGLYNDVLVFDHVEKKVYVIHWVR 255
G+ +++ + + ++ E +++
Sbjct: 106 DQAFGWVAFEFGVHRYGL------QQRLAPHTPLARVFSPRTRIMVSEKEIRLF------ 153
Query: 256 LDQHSSVQKAYAEGLEHLEKLVARKVITRSIDLHTHHFGPPLKKSNMTSEAYKNAVLEAK 315
A E +++L+A V + ++ V A
Sbjct: 154 --------DAGIRHREAIDRLLATGVREVP--------QSRSVDVSDDPSGFRRRVAVAV 197
Query: 316 EHIQAGDIFQIVLSQRFERRTFADPFEVYRALRVVNPSPYMTYLQARGCILVASSPEILT 375
+ I AG +++LS+ E D YR R N LQ G + SPE++T
Sbjct: 198 DEIAAGRYHKVILSRCVEVPFAIDFPLTYRLGRRHNTPVRSFLLQLGGIRALGYSPELVT 257
Query: 376 RVKKNKIV-NRPLAGTVRRGRTTEEDEMLETQLLKDAKQCAEHVMLVDLGRNDVGKVARS 434
V+ + +V PLAGT GR D + L ++K+ EH + V ++ +A
Sbjct: 258 AVRADGVVITEPLAGTRALGRGPAIDRLARDDLESNSKEIVEHAISVRSSLEEITDIAEP 317
Query: 435 GSVKVEKLMNVERYSHVMHISSTITGELQDRLSCWDALRAALPVGTVSGAPKVKAMELID 494
GS V M V V H+ STI L AL A P T SG PK +E I
Sbjct: 318 GSAAVIDFMTVRERGSVQHLGSTIRARLDPSSDRMAALEALFPAVTASGIPKAAGVEAIF 377
Query: 495 ELEVNRRGPYSGGFGGVSFTGDMDIALALRTMVFQTGTRYDTMYSYKDARKRREWVAYLQ 554
L+ RG YSG +S G +D AL LR G +L+
Sbjct: 378 RLDECPRGLYSGAVVMLSADGGLDAALTLRAAYQVGGR------------------TWLR 419
Query: 555 AGAGIVADSDPDDEHRECQNKAAGLARAI 583
AGAGI+ +S+P+ E E K + L +
Sbjct: 420 AGAGIIEESEPEREFEETCEKLSTLTPYL 448
>3h9m_A P-aminobenzoate synthetase, component I; para-aminobenzoate
synthetase, cytophaga hutchinsonii,YP_678417.1,
CHU_1808; HET: PGE; 1.57A {Cytophaga hutchinsonii atcc
33406}
Length = 436
Score = 462 bits (1192), Expect = e-160
Identities = 95/404 (23%), Positives = 179/404 (44%), Gaps = 43/404 (10%)
Query: 185 QIIDELPEAFCGGW-VGYFSYDTVRYVEKKKLPFSKAPHDDRSLADIHLGLYNDVLVFDH 243
+ +E+ + + W + SYD VE+ L + + A + V
Sbjct: 68 ETWNEIKKGYTNEWIFVFASYDGKNSVEQ--LH--TSKEAGIAFAAATFFIPEHVWEIQP 123
Query: 244 VEKKVYVIHWVRLDQHSSVQKAYAEGLEHLEKLVARKVITRSIDLHTHHFGPPLKKSNMT 303
+ H + ++H E + + K ++
Sbjct: 124 DGILI----------HKGSGSSLVTEIQHAEPSTPVQQSDIFV------------KQVVS 161
Query: 304 SEAYKNAVLEAKEHIQAGDIFQIVLSQRFERRTFADPFEVYRALRVVNPSPYMTYLQARG 363
E+Y NA E ++ I GD ++I F + P Y+ L P P+ Y +
Sbjct: 162 KESYFNAFDELQQIIAQGDAYEINYCIPFTAKGNISPAATYQRLNKKTPMPFSVYYKFNT 221
Query: 364 CILVASSPEILTRVKKNKIVNRPLAGTVRRGRTTEEDEMLETQLLKDAKQCAEHVMLVDL 423
++++SPE + + I+++P+ GT +RG++ EDEML+ QL K+ +E+ M+VDL
Sbjct: 222 EYILSASPERFIKKTGDTIISQPIKGTSKRGKSKAEDEMLKQQLGTSEKEQSENTMIVDL 281
Query: 424 GRNDVGKVARSGSVKVEKLMNVERYSHVMHISSTITGELQDRLSCWDALRAALPVGTVSG 483
RND+ + A +GSV V +L + + +V + ST+ + S D ++ A P+G+++G
Sbjct: 282 VRNDLSRTAVAGSVCVPELSGLYTFPNVHQLISTVQSTIDPACSSIDVIQQAFPMGSMTG 341
Query: 484 APKVKAMELIDELEVNRRGPYSGGFGGVSFTGDMDIALALRTMVFQTGTRYDTMYSYKDA 543
APKV M+ ID +E RGP+SG G + + D + +R++ + + T+
Sbjct: 342 APKVNVMKFIDRIESMARGPFSGTVGYMDPHDNFDFNVLIRSIFYNSATQE--------- 392
Query: 544 RKRREWVAYLQAGAGIVADSDPDDEHRECQNKAAGLARAIDLAE 587
+++AG+ I + + + E+ EC K + ++ E
Sbjct: 393 -------LFMEAGSAITSYAKAETEYEECLLKITPMIHILNNQE 429
>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel,
chorismate, type 1 glutamine amidotransfera phenazine
biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP}
PDB: 3r74_A* 3r76_A*
Length = 645
Score = 379 bits (974), Expect = e-124
Identities = 73/411 (17%), Positives = 138/411 (33%), Gaps = 53/411 (12%)
Query: 191 PEAFCGGWVGYFSYDTVRYVEKKKLPFSKAPHDDRSLADIHLGLYNDVLVFDHVEKKVYV 250
A + G SY + P + ++ + ++ + + ++ +
Sbjct: 35 ERAMIDVFAGAVSYPSSLAEL----PLAAPTATGADRQELLV-----MVPYRQLHERGFK 85
Query: 251 IHWVRLDQHSSVQKAYAEGLEHLEKLVARKVITRSIDLHTHHFGPPLKKSNMTSEAYKNA 310
H D + + + E + +A + + ++ EAY
Sbjct: 86 TH----DDGAPLVAITCDEHETVSAQLALA------AIPDADTALGERHFDIDDEAYAEI 135
Query: 311 VLEA-KEHIQAGDIFQIVLSQRFERR----TFADPFEVY-RALRVVNPSPYMTYLQARGC 364
V + I G V+ + E + A V+ R +R + ++ +
Sbjct: 136 VERVITDEIGTGAGSNFVIKRTLEGDLDDYSPAKALAVFKRLMRREVGAYWIFVIHTGER 195
Query: 365 ILVASSPEILTRVKKNKIVNRPLAGTVRRGRTTEEDEMLETQLLKDAKQCAEHVMLVDLG 424
V ++PE + + P++GT R ++ + + L D K+ E M++D
Sbjct: 196 TFVGATPERHLTLHEGCATMNPISGTYRYPQSGPTIDGIN-AFLGDRKESDELYMVLDEE 254
Query: 425 RNDVGKVARSG-SVKVEKLMNVERYSHVMHISSTITGELQDRLSCWDALRAALPVGTVSG 483
+ ++ +G V L + R +H + I G D LR + TV+G
Sbjct: 255 LKMMARICPAGGQVTGPHLREMARLAHTEYF---IVGHT--EADVRDLLRETMFAPTVTG 309
Query: 484 APKVKAMELIDELEVNRRGPYSGGFGGVSFTG----DMDIALALRTMVFQTGTRYDTMYS 539
+P A +I E RG YSG + +D A+ +RT
Sbjct: 310 SPIESATRVIARHERAGRGYYSGIAALIGRDARGGRTLDSAILIRTAEID---------- 359
Query: 540 YKDARKRREWVAYLQAGAGIVADSDPDDEHRECQNKAAGLARAIDLAESAF 590
R + G+ +V SD E E K A L+ A D E+
Sbjct: 360 -------RAGHVRIGVGSTLVRHSDAVSEVMETHAKVAALSNAFDPPEAGP 403
>3os6_A Isochorismate synthase DHBC; structural genomics, center for
structural genomics of infec diseases, csgid, isomerase;
HET: MSE 15P; 2.40A {Bacillus anthracis}
Length = 399
Score = 360 bits (926), Expect = e-120
Identities = 75/301 (24%), Positives = 127/301 (42%), Gaps = 29/301 (9%)
Query: 299 KSNMTSEAYKNAVLEAKEHIQAGDIFQIVLSQRFERRTFA--DPFEVYRALRVVNPSPYM 356
E Y V + E I+ GD+ +IVLS+ + ++ D ++ R L N Y
Sbjct: 116 TPVPDHEVYMKGVKQGIEKIKDGDLKKIVLSRSLDVKSSGKIDKQKLLRELAEHNKHGYT 175
Query: 357 TYL------QARGCILVASSPEILTRVKKNKIVNRPLAGTVRRGRTTEEDEMLETQLLKD 410
+ L+ +SPE+L ++++ PLAG+ R ED+ +LL
Sbjct: 176 FAVNLPKDENENSKTLIGASPELLVSRHGMQVISNPLAGSRPRSDDPVEDKRRAEELLSS 235
Query: 411 AKQCAEHVMLVDLGRNDVGKVARSGSVKVEKLMNVERYSHVMHISSTITGELQDR-LSCW 469
K EH ++V+ + ++ V + +V + H+S+ + GEL++ S
Sbjct: 236 PKDLHEHAVVVEAVAAALRPYCH--TLYVPEKPSVIHSEAMWHLSTEVKGELKNPNTSSL 293
Query: 470 DALRAALPVGTVSGAPKVKAMELIDELEVNRRGPYSGGFGGVSFTGDMDIALALRTMVFQ 529
+ A P V G P +A E I ++E R ++G G GD + + +R Q
Sbjct: 294 ELAIALHPTPAVCGTPMEEAREAIQKIEPFDREFFTGMLGWSDLNGDGEWIVTIRCAEVQ 353
Query: 530 TGTRYDTMYSYKDARKRREWVAYLQAGAGIVADSDPDDEHRECQNKAAGLARAIDLAESA 589
T L AGAG+VA+S P+DE E K + +A+ L +S+
Sbjct: 354 ENT------------------LRLYAGAGVVAESKPEDELAETSAKFQTMLKALGLNDSS 395
Query: 590 F 590
Sbjct: 396 L 396
>3gse_A Menaquinone-specific isochorismate synthase; MENF,yersinia P CO92,
YPO2528, csgid, isomerase, structural genomics; 2.28A
{Yersinia pestis}
Length = 458
Score = 345 bits (888), Expect = e-113
Identities = 87/407 (21%), Positives = 160/407 (39%), Gaps = 41/407 (10%)
Query: 185 QIIDELPEAFCGGWVGYFSYDTVRYVEKKKLPFSKAPHDDRSLADIHLGLYNDVLVFDHV 244
I + P+A G +++ V + L + ++ L L ++
Sbjct: 84 DFIQQNPDANGLRIWGLNAFEPVMVFGQ--LTDN-GLVSGKNAQASFLFLPRLEILRRGK 140
Query: 245 EKKVYVIHWVRLDQHSSVQKAYAEGLEHLEKLVARKVITRSIDLHTHHFGPPLKKSNMTS 304
+ + + L +S+QK + + +++L+A + L +
Sbjct: 141 KTSLTLN----LSSETSLQKDALQAITFIDQLMAAR------ALPVLNARIQHSSHTPGY 190
Query: 305 EAYKNAVLEAKEHIQAGDIFQIVLSQRFERRTFA--DPFEVYRALRVVNPSPYMTYLQ-A 361
++N + +A I+ + ++VL++ A R VN Y L+
Sbjct: 191 PQWRNLIQQALNDIEQQKLDKVVLARTTTLTLNKPLSCAAFMAASRQVNHRCYHFMLRFD 250
Query: 362 RGCILVASSPEILTRVKKNKIVNRPLAGTVRRGRTTEEDEMLETQLLKDAKQCAEHVMLV 421
+ SSPE L ++ + LAGTV + + +L L+ D K E++++V
Sbjct: 251 DRQAFLGSSPERLYLRQQLHLETEALAGTVSNLDSDPQAAVLADWLMHDEKNQRENLLVV 310
Query: 422 DLGRNDVGKVARSGSVKVEKLM-NVERYSHVMHISSTITGELQDRLSCWDALRAALPVGT 480
D D+ + + G V+ + + R V H+ I +L S D L+ P
Sbjct: 311 D----DICQRLQGGVTAVDVMPPEIIRLRKVQHLRRRICAQLSRA-SDTDCLQRLQPTAA 365
Query: 481 VSGAPKVKAMELIDELEVNRRGPYSGGFGGVSFTGDMDIALALRTMVFQTGTRYDTMYSY 540
V+G P+ A + I + E+ RG Y+G G +S + ++ALR+
Sbjct: 366 VAGLPREAARQFIAKHELFSRGWYAGSAGYLSL-KRTEFSVALRSARVDGQQ-------- 416
Query: 541 KDARKRREWVAYLQAGAGIVADSDPDDEHRECQNKAAGLARAIDLAE 587
+L AGAGIVA SD + E +E NK+AGL ++
Sbjct: 417 ----------IHLYAGAGIVAGSDAEQEWQEIDNKSAGLQSLLEHEA 453
>3bzm_A Menaquinone-specific isochorismate synthase; isomerase, menaquinone
biosynthesis; HET: CIT; 1.95A {Escherichia coli} SCOP:
d.161.1.1 PDB: 2eua_A* 3bzn_A
Length = 431
Score = 341 bits (878), Expect = e-112
Identities = 80/350 (22%), Positives = 134/350 (38%), Gaps = 34/350 (9%)
Query: 239 LVFDHVEKKVYVIHWVRLDQHSSVQKAYAEGLEHLEKLVARKVITRSIDLHTHHFGPPLK 298
L + K + + L SS+Q + E + LV+ K L H +
Sbjct: 112 LEWRRCGGKATLR--LTLFSESSLQHDAIQAKEFIATLVSIK------PLPGLHLTTTRE 163
Query: 299 KSNMTSEAYKNAVLEAKEHIQAGDIFQIVLSQRFERRTFA--DPFEVYRALRVVNPSPYM 356
+ + + A + I G++ ++VL++ + + + + A R +N + Y
Sbjct: 164 QHWPDKTGWTQLIELATKTIAEGELDKVVLARATDLHFASPVNAAAMMAASRRLNLNCYH 223
Query: 357 TYLQARG-CILVASSPEILTRVKKNKIVNRPLAGTVRRGRTTEEDEMLETQLLKDAKQCA 415
Y+ G + SSPE L R + + LAGTV ++ + L L+ D K
Sbjct: 224 FYMAFDGENAFLGSSPERLWRRRDKALRTEALAGTVANNPDDKQAQQLGEWLMADDKNQR 283
Query: 416 EHVMLVDLGRNDVGKVARSGSVKVEKLMNVERYSHVMHISSTITGELQDRLSCWDALRAA 475
E++++V+ + ++ V V R V H+ I L L
Sbjct: 284 ENMLVVEDICQRLQADTQTLDVLP---PQVLRLRKVQHLRRCIWTSLNKADD-VICLHQL 339
Query: 476 LPVGTVSGAPKVKAMELIDELEVNRRGPYSGGFGGVSFTGDMDIALALRTMVFQTGTRYD 535
P V+G P+ A + I E R Y+G G +S + ++LR+
Sbjct: 340 QPTAAVAGLPRDLARQFIARHEPFTREWYAGSAGYLSL-QQSEFCVSLRSAKISGNV--- 395
Query: 536 TMYSYKDARKRREWVAYLQAGAGIVADSDPDDEHRECQNKAAGLARAIDL 585
L AGAGIV SDP+ E +E NKAAGL + +
Sbjct: 396 ---------------VRLYAGAGIVRGSDPEQEWQEIDNKAAGLRTLLQM 430
>3hwo_A Isochorismate synthase ENTC; chorismate-utilizing enzymes,
siderophore, enterobactin, enterobactin biosynthesis,
ION T iron, iron transport; HET: ISC; 2.30A {Escherichia
coli}
Length = 394
Score = 332 bits (854), Expect = e-109
Identities = 64/300 (21%), Positives = 111/300 (37%), Gaps = 23/300 (7%)
Query: 289 HTHHFGPPLKKSNMTSEAYKNAVLEAKEHIQAGDIFQIVLSQRFERRTFA--DPFEVYRA 346
+ +++ ++ V A + ++VLS+ + T A D +
Sbjct: 114 RSQSLNVVERQAIPEQTTFEQMVARAAALTATPQVDKVVLSRLIDITTDAAIDSGVLLER 173
Query: 347 LRVVNPSPYMTYLQ-ARGCILVASSPEILTRVKKNKIVNRPLAGTVRRGRTTEEDEMLET 405
L NP Y ++ A G +L+ +SPE+L R + + PLAG+ RR D
Sbjct: 174 LIAQNPVSYNFHVPLADGGVLLGASPELLLRKDGERFSSIPLAGSARRQPDEVLDREAGN 233
Query: 406 QLLKDAKQCAEHVMLVDLGRNDVGKVARSGSVKVEKLMNVERYSHVMHISSTITGELQDR 465
+LL K EH ++ + + + S + V + + H+++ G+ +
Sbjct: 234 RLLASEKDRHEHELVTQAMKEVLRER--SSELHVPSSPQLITTPTLWHLATPFEGKANSQ 291
Query: 466 LSCWDALRAALPVGTVSGAPKVKAMELIDELEVNRRGPYSGGFGGVSFTGDMDIALALRT 525
+ P +SG P A ++I ELE R + G G G+ + + +R
Sbjct: 292 ENALTLACLLHPTPALSGFPHQAATQVIAELEPFDRELFGGIVGWCDSEGNGEWVVTIRC 351
Query: 526 MVFQTGTRYDTMYSYKDARKRREWVAYLQAGAGIVADSDPDDEHRECQNKAAGLARAIDL 585
+ L AGAGIV S P E RE K + + L
Sbjct: 352 AKLRENQ------------------VRLFAGAGIVPASSPLGEWRETGVKLSTMLNVFGL 393
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 64.9 bits (157), Expect = 5e-11
Identities = 82/496 (16%), Positives = 152/496 (30%), Gaps = 125/496 (25%)
Query: 144 MEVIVKDNNVT-IMDHEKGSLVEEVVDDPMEIPRKISED----W----KPQIIDELPEAF 194
+ V + + + D K L +E +D + +S W K + E+ + F
Sbjct: 26 EDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE---EMVQKF 82
Query: 195 CGGWV--GY-FSYDTVRYVEKKKLPFSKAPHDDRSL-ADIHLGLYNDVLVFDHVEKKVYV 250
+ Y F ++ + P + + LYND VF K V
Sbjct: 83 VEEVLRINYKFLMSPIKTE-------QRQPSMMTRMYIEQRDRLYNDNQVF----AKYNV 131
Query: 251 IHWVRLDQHSSVQKAYAEGLEHLEKL-VARKVITRSIDLHTHH----FGPPLKKSNMTSE 305
RL + +++A L +L A+ V+ G K+ + +
Sbjct: 132 ---SRLQPYLKLRQA-------LLELRPAKNVLI--------DGVLGSG----KTWVALD 169
Query: 306 AYKNAVLEAKEHIQAGDIFQIVLSQRFERRTF----------ADPFEVYRALRVVNPSPY 355
+ ++ K IF + L T DP R+ N
Sbjct: 170 VCLSYKVQCK---MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226
Query: 356 MTYLQARGCILVASSPE-----ILTRVKKNKIVN------RPLAGTVRRGRTTEEDEMLE 404
+ +QA L+ S P +L V+ K N + L TT ++
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL-------TTRFKQV-- 277
Query: 405 TQLLKDAKQCAEHVMLVDLG-----RNDVGKVARSGSVKVEKLMNVERYSHVMHISSTIT 459
T L A H+ L + + + + L ++ + S I
Sbjct: 278 TDFLSAATTT--HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL-SIIA 334
Query: 460 GELQDRLSCWDALRAALPVGTVSGAPKVKAMEL-IDELE-VNRRGPYSGGFGGVSFTGDM 517
++D L+ WD + V+ +E ++ LE R + V F
Sbjct: 335 ESIRDGLATWDNWK------HVNCDKLTTIIESSLNVLEPAEYRKMFD-RL-SV-FPPSA 385
Query: 518 DIALALRTMVFQTGTRYDTM------YSYKDARKRREWVAYLQAGAGIVADSDPD---DE 568
I L ++++ + D M + Y K+ + S P +
Sbjct: 386 HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI----------SIPSIYLEL 435
Query: 569 HRECQNKAAGLARAID 584
+ +N+ A +D
Sbjct: 436 KVKLENEYALHRSIVD 451
Score = 56.4 bits (135), Expect = 2e-08
Identities = 52/381 (13%), Positives = 112/381 (29%), Gaps = 104/381 (27%)
Query: 176 RKISEDWKPQIIDELPEAFCGGWVGYFSYDTVRYVEKKKLP-FSKAPHDDRSLADIHLGL 234
+ I ++ +D D + V+ SK D
Sbjct: 19 KDILSVFEDAFVDNF--------------D-CKDVQDMPKSILSKEEIDH---------- 53
Query: 235 YNDVLVFDHVEKKVYVIHWVRLDQHSS-VQKAYAEGLEHLEKLVARKVITRSID--LHTH 291
+++ + W L + VQK E L K + + T + T
Sbjct: 54 ---IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR 110
Query: 292 HF----------GPPLKKSNMTSE----AYKNAVLEAKE------HIQAGD-----IFQI 326
+ K N++ + A+LE + G +
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV 170
Query: 327 VLSQRFERRTFADPFEVYRALRVVNPSPYMTYLQARGCILVASSPEIL----TRVKKNKI 382
LS + + + F+++ +L + C + E+L ++ N
Sbjct: 171 CLSYKVQCK-M--DFKIF-------------WLNLKNCNSPETVLEMLQKLLYQIDPNWT 214
Query: 383 VNRPLAGTVRRGRTTEEDEMLETQLLKDAKQCAEHVMLVDLGRNDV--GKVAR------- 433
+ ++ + + E+ K + C L+ L +V K
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENC-----LLVL--LNVQNAKAWNAFNLSCK 267
Query: 434 ----SGSVKVEKLMNVERYSHV--MHISSTIT-GELQDRLSCWDALRAA-LPVGTVSGAP 485
+ +V ++ +H+ H S T+T E++ L + R LP ++ P
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327
Query: 486 KVKAM--ELIDELEVNRRGPY 504
+ ++ E I + + +
Sbjct: 328 RRLSIIAESIRD-GLATWDNW 347
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 63.5 bits (154), Expect = 1e-10
Identities = 94/581 (16%), Positives = 163/581 (28%), Gaps = 224/581 (38%)
Query: 67 ATKLASDASGFSEASKRANLVPLYRCIFSDHLTPVVAYRCLVQEDDREAPSFLFESVEPG 126
A KL + + K L+ + + A + D+++ S LF +V G
Sbjct: 105 AAKLLQEND--TTLVKTKELI---KNYIT-------ARIMAKRPFDKKSNSALFRAVGEG 152
Query: 127 VRVSNVGRYSVVGAQPVMEVIVKDNNVTIMDHEKGSLVEEVVDDPMEIPRKISEDWKPQI 186
N ++ G Q G+ ++D+
Sbjct: 153 ----NAQLVAIFGGQ-------------------GN----------------TDDY---- 169
Query: 187 IDELPEAFCGGWVGYFSY-----DTVRYVEKKKLPFSKAPHDDRSLA----DIHLGLYN- 236
+EL + Y +Y D +++ + + D + +I L N
Sbjct: 170 FEELRDL-------YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENP 222
Query: 237 ----DVLVFDHVEKKV------------YVIHWVRLDQHSSVQKAYAEGL-EHLEKLVAR 279
D + + YV+ L ++Y +G H + LV
Sbjct: 223 SNTPDKDYLLSIP--ISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTA 280
Query: 280 KVITRSIDLHTHHFGPPLKKSNMTSEAYKNAVLEAKEHIQAGDIFQIVL-SQRFERRTFA 338
I + + E++ +V +A I +F I + T
Sbjct: 281 VAIAET----------------DSWESFFVSVRKA---ITV--LFFIGVRCYEAYPNTSL 319
Query: 339 DPFEVYRALRVVN--PSPYMTYLQARGCILVASSPEILTRVKK-NK-----------IVN 384
P + +L PSP M L + ++ V K N +VN
Sbjct: 320 PPSILEDSLENNEGVPSP-M--LSISNL----TQEQVQDYVNKTNSHLPAGKQVEISLVN 372
Query: 385 RP----LAGTVR--RGRTTEEDEMLETQLLKDAKQCAEHVMLVDLGRNDVGKVARSGSVK 438
++G + G L L K A D ++ S
Sbjct: 373 GAKNLVVSGPPQSLYG--------LNLTL---RKAKAPS-------GLDQSRIPFSE--- 411
Query: 439 VEKLMNVERY--------SHVMH-ISSTITGELQDRLSCWDALRAALPV-GTVSGA---- 484
KL R+ SH++ S I +L ++A +PV T G+
Sbjct: 412 -RKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRV 470
Query: 485 -PKVKAMELID---------ELEVNRR-------GPYSGGFGGVSFTGDMDIALALRTMV 527
+ ++D E + GP GG S G + T
Sbjct: 471 LSGSISERIVDCIIRLPVKWETTTQFKATHILDFGP-----GGASGLGVL-------THR 518
Query: 528 FQTGTRYDTMYSYKDARKRREWVAYLQAGAGIVADSDPDDE 568
+ GT V + AG D +PDD+
Sbjct: 519 NKDGT----------------GVRVIVAGT---LDINPDDD 540
Score = 53.5 bits (128), Expect = 2e-07
Identities = 59/367 (16%), Positives = 107/367 (29%), Gaps = 121/367 (32%)
Query: 20 VPPSHRLSLVPVTVTRINLPKSAATVSTVKCC--------VSRQTTTTTS----TATAPA 67
P L +P++ I + + A V T K + T S TA A A
Sbjct: 225 TPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIA 284
Query: 68 TKLASDASGFSEASKRANLVPLYRCIFSDHLTPVVAYRCLVQE---DDREAPSFLFESVE 124
F + ++A +F + RC E + PS L +S+E
Sbjct: 285 E--TDSWESFFVSVRKA-----ITVLFF------IGVRC--YEAYPNTSLPPSILEDSLE 329
Query: 125 PG-------VRVSNVGRYSVVGAQPVMEVIVKDNNVTIMDHEKGSLVEEVVDDPMEI--- 174
+ +SN+ + + V + + K N L +EI
Sbjct: 330 NNEGVPSPMLSISNLTQ------EQVQDYVNKTN---------SHLPA---GKQVEISLV 371
Query: 175 --PRKISEDWKPQIIDELPEAFCGGWVGYFSYDTVRYVEKKKLPF----SKAPHDDR--- 225
+ + ++ P++ G + K K P S+ P +R
Sbjct: 372 NGAKNL-------VVSGPPQSLYG---------LNLTLRKAKAPSGLDQSRIPFSERKLK 415
Query: 226 -------------S--LAD----IHLGLYNDVLVFDHVEKKVYVIH---WVRLDQHSSVQ 263
S L I+ L + + F+ + ++ V L +
Sbjct: 416 FSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDL------R 469
Query: 264 KAYAEGLEHLEKLVARKVI--TRSIDLHTHH---FGPPLKKSNMTSEAYKNAVLEAK--E 316
E + + R + + H FG P S + ++N +
Sbjct: 470 VLSGSISERIVDCIIRLPVKWETTTQFKATHILDFG-PGGASGLGVLTHRN--KDGTGVR 526
Query: 317 HIQAGDI 323
I AG +
Sbjct: 527 VIVAGTL 533
Score = 33.9 bits (77), Expect = 0.17
Identities = 54/303 (17%), Positives = 95/303 (31%), Gaps = 117/303 (38%)
Query: 147 IVKDNNVTIMDH---EKG--------SLVEEVVDDPMEIPRKISEDWKPQIIDELPEAFC 195
IV +N V + H EKG +++ E + D KI ++ I+E ++
Sbjct: 1664 IVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKE-----INEHSTSYT 1718
Query: 196 GGWVG--------YF--------SYDTVRYVEKKKLPFSKAPHDDRSLADIH-LGLYN-- 236
+ F ++ K L P D + A H LG Y
Sbjct: 1719 --FRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGL----IPADA-TFAG-HSLGEYAAL 1770
Query: 237 ----DVLVFDHVEKKVYVIHWVRLDQHSSVQKAYAEGLEHLEKLVARKVITRSIDLHTHH 292
DV+ + + V V+ R G ++ V R + RS +
Sbjct: 1771 ASLADVMSIESL---VEVVF-YR-------------G-MTMQVAVPRDELGRS------N 1806
Query: 293 FG-----PPLKKSNMTSEAYKNAVLEAKEHIQAGDIFQIVLSQRFERRTFADPFEVYRAL 347
+G P ++ + EA + V + + G + +IV
Sbjct: 1807 YGMIAINPGRVAASFSQEALQYVVERVGK--RTGWLVEIV-------------------- 1844
Query: 348 RVVNP-SPYMTY-----LQARGCILVASSPEILTRVKKNKIVNRPLAGTVRRGRTTEE-D 400
N Y L+A + + +L +K KI L ++ + EE +
Sbjct: 1845 ---NYNVENQQYVAAGDLRA-----LDTVTNVLNFIKLQKIDIIELQKSL----SLEEVE 1892
Query: 401 EML 403
L
Sbjct: 1893 GHL 1895
Score = 33.1 bits (75), Expect = 0.32
Identities = 40/222 (18%), Positives = 64/222 (28%), Gaps = 83/222 (37%)
Query: 2 NAGTAATSMQSLSFS--------------NRLVPPSHRLSLVPVTVTRINLPKSAATVST 47
N + M LS S N +P ++ ++ +N K+
Sbjct: 330 NNEGVPSPM--LSISNLTQEQVQDYVNKTNSHLPAGKQVE-----ISLVNGAKNL----- 377
Query: 48 VKCCVS------RQTTTTTSTATAPATKLASDASGFSEASKRANLVPLYRCIF------- 94
V VS T A AP+ S S+R L R F
Sbjct: 378 V---VSGPPQSLYGLNLTLRKAKAPSGLDQSRI----PFSERK-LKFSNR--FLPVASPF 427
Query: 95 -SDHLTPVVAYRCLVQEDDREAPSFLFESVEPGVRVSNVGRYSVVGAQPVMEVIVKDNNV 153
S L P L+ +D + F + + + V Y D
Sbjct: 428 HSHLLVPASD---LINKDL-VKNNVSFNAKDIQIPV-----YDTFDG--------SD--- 467
Query: 154 TIMDHEKGSLVEEVVDDPMEIPRKISEDWKPQ-------IID 188
+ GS+ E +VD + +P + W+ I+D
Sbjct: 468 --LRVLSGSISERIVDCIIRLP--V--KWETTTQFKATHILD 503
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA
replication, MCM complex, AAA+ Pro ATP-binding,
DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Length = 595
Score = 34.2 bits (79), Expect = 0.12
Identities = 26/201 (12%), Positives = 64/201 (31%), Gaps = 33/201 (16%)
Query: 18 RLVPPSH--RLSLVPVTVTRINLPKSAATVSTVKCCVSRQTTTTTSTATAPATKLASDAS 75
R + + +L + + ++ K +T K ++ +
Sbjct: 104 RKIRSTDIGKLITIDGILVKVTPVKERIYKATYKHIHPDCMQEFEWPEDEEMPEVLEMPT 163
Query: 76 GFSEASKRANLVPLYR-CIFSDHLTPVVAYRCLVQEDDREAPS-------------FLFE 121
+ K + D + ++QE E PS L +
Sbjct: 164 ICPKCGKPGQFRLIPEKTKLIDW------QKAVIQERPEEVPSGQLPRQLEIILEDDLVD 217
Query: 122 SVEPGVRVSNVGRYSVV-------GAQPVMEVIVKDNNVTIMDHEKGSLVEEVVDDPMEI 174
S PG RV G + G++ V ++ +K +++ + + + ++ +
Sbjct: 218 SARPGDRVKVTGILDIKQDSPVKRGSRAVFDIYMKVSSIEVSQKVLDEV--IISEEDEKK 275
Query: 175 PRKISEDWKPQIIDELPEAFC 195
+ +++D P I D + +
Sbjct: 276 IKDLAKD--PWIRDRIISSIA 294
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A
{Campylobacter jejuni} SCOP: c.37.1.2
Length = 175
Score = 31.8 bits (73), Expect = 0.31
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 6/42 (14%)
Query: 349 VVNPSPYMTYLQARGCI--LVASSPEILTRVKKNKIVNRPLA 388
VN ++ L+ G L A + R+ K++I RPL
Sbjct: 84 FVN----VSNLEKAGFCIYLKADFEYLKKRLDKDEISKRPLF 121
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A
{Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Length = 279
Score = 30.4 bits (69), Expect = 1.4
Identities = 15/76 (19%), Positives = 33/76 (43%), Gaps = 10/76 (13%)
Query: 119 LFESVEPGVRVSNVGRYSVVGAQ--PVMEVIVKDNNVTIM--DHEKGSLVEEVVDDPMEI 174
L +++ PG V G V + + + N + + E+ + EE D +I
Sbjct: 208 LVDTLTPGDIVRVTGTLRTVRDERTKRFKNFIYGNYTEFLEQEFEELQISEE---DEEKI 264
Query: 175 PRKISEDWKPQIIDEL 190
++++ D P I +++
Sbjct: 265 -KELAGD--PNIYEKI 277
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 30.0 bits (67), Expect = 1.5
Identities = 7/46 (15%), Positives = 14/46 (30%), Gaps = 20/46 (43%)
Query: 155 IMDHEKGSLV-EE---VVDDPMEIPRKISEDWKPQIIDELPE--AF 194
+ +G +V V+ D +++D E F
Sbjct: 35 VERFSEGDVVCALCGLVLSD--------------KLVDTRSEWRTF 66
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 29.5 bits (66), Expect = 3.8
Identities = 11/71 (15%), Positives = 16/71 (22%), Gaps = 11/71 (15%)
Query: 507 GFGGVSFTGDMDIALALRTMVFQTGTRYDTMYSYKDARKRREWVAY------LQAGAGIV 560
GFG + ++ T D Y RE AY + V
Sbjct: 1446 GFGQKGGQ----AIVVHPDYLYGAITE-DRYNEYVAKVSAREKSAYKFFHNGMIYNKLFV 1500
Query: 561 ADSDPDDEHRE 571
+
Sbjct: 1501 SKEHAPYTDEL 1511
>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc
binding, X-linked agammaglobulinemia, tyrosine-protein
kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A*
2z0p_A* 1bwn_A*
Length = 169
Score = 28.0 bits (61), Expect = 5.6
Identities = 10/70 (14%), Positives = 21/70 (30%), Gaps = 1/70 (1%)
Query: 486 KVKAMELIDELEVNRRGPYSGGFGGVSFTGDMDIALALRTMVFQTGTRYDTMYSY-KDAR 544
K+ +E + + G S + + FQ +Y +
Sbjct: 59 KITCVETVVPEKNPPPERQIPRRGEESSEMEQISIIERFPYPFQVVYDEGPLYVFSPTEE 118
Query: 545 KRREWVAYLQ 554
R+ W+ L+
Sbjct: 119 LRKRWIHQLK 128
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification
enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus
jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Length = 336
Score = 28.3 bits (63), Expect = 8.0
Identities = 13/124 (10%), Positives = 32/124 (25%), Gaps = 28/124 (22%)
Query: 445 VERYSHVMHISSTITGELQDRLSCWDALRAALPVGTVSGAPKVKAMELIDELEVNRRGPY 504
+ ++ + + + + R + +P V R+
Sbjct: 97 YDVVGDLVILQISDEVDEKIRKEIGELAYKLIPCKGV----------------FRRKSEV 140
Query: 505 SGGFGGVSFT---GDMDIALALRTMVFQTGTRYD-----TMYSYKDARKRREWVAYLQAG 556
G F G+ T+ + G R +S + +R + +
Sbjct: 141 KGEFRVRELEHLAGENR----TLTIHKENGYRLWVDIAKVYFSPRLGGERARIMKKVSLN 196
Query: 557 AGIV 560
+V
Sbjct: 197 DVVV 200
>3tai_A DNA double-strand break repair protein NURA; recombination,
hydrolase; HET: DNA; 2.82A {Pyrococcus furiosus} PDB:
3tal_A* 3taz_A*
Length = 471
Score = 28.0 bits (61), Expect = 9.5
Identities = 31/220 (14%), Positives = 76/220 (34%), Gaps = 10/220 (4%)
Query: 164 VEEVVDDPMEIPRKISEDWKPQIIDELPEAF-CGGWVGYFSYDTVRYVEKKKLPFSKAPH 222
VEE ++ I D ++++L + + + Y S + +K L +S
Sbjct: 196 VEEHLEKNGNYDSPILTD---NVVEKLRKKYIDTKVIAYGSGKVKVKIPRKALGYSPRVI 252
Query: 223 DDRSLADIHLGLYNDVLVFDHVEKKVYVIHWVRLDQHSSVQKAYAEGLEHLEKLV-ARKV 281
L +++L EK + + + +Y E L ++KL+ + +
Sbjct: 253 PIEVLESSRGKSVDELLQELDEEKVELYLGKDDIYDALHMTLSYIEYLYSIDKLLEVKNL 312
Query: 282 ITRSIDLHTHHFGPPLKKSNMTSEAYKNAVLEAKEHIQAGDIFQIVLSQRFERRTFADPF 341
+ +T L + A +AV+ + +I + + +F D
Sbjct: 313 AYIAKSFYTKTLARTL-GVEIVDTALLDAVIRTLIGHEKEGYLEIEHAVVPPKWSFPDFL 371
Query: 342 EVY--RALRVVNPSPYMTY--LQARGCILVASSPEILTRV 377
++++ ++ Y + I + S + ++
Sbjct: 372 LSKFRNIEKLIDKGIHLAYVRFEQGDVIYMLQSTTNIEKI 411
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.132 0.384
Gapped
Lambda K H
0.267 0.0723 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,195,066
Number of extensions: 579336
Number of successful extensions: 1386
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1309
Number of HSP's successfully gapped: 30
Length of query: 592
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 493
Effective length of database: 3,937,614
Effective search space: 1941243702
Effective search space used: 1941243702
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.9 bits)