Query 007700
Match_columns 592
No_of_seqs 177 out of 274
Neff 4.7
Searched_HMMs 46136
Date Thu Mar 28 14:09:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007700.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007700hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2489 Transmembrane protein 100.0 2E-210 5E-215 1645.9 38.3 567 1-586 1-580 (592)
2 PF05602 CLPTM1: Cleft lip and 100.0 3E-125 6E-130 1016.0 40.4 424 25-464 2-438 (438)
3 PF04193 PQ-loop: PQ loop repe 92.8 0.027 5.9E-07 45.0 -0.4 48 485-532 12-59 (61)
4 smart00679 CTNS Repeated motif 72.1 0.76 1.6E-05 32.2 -1.1 24 488-511 1-24 (32)
5 TIGR00951 2A43 Lysosomal Cysti 52.7 2.3 5E-05 43.1 -2.1 37 474-510 138-174 (220)
6 TIGR00951 2A43 Lysosomal Cysti 50.0 5.4 0.00012 40.5 0.0 46 475-520 3-49 (220)
7 KOG1623 Multitransmembrane pro 45.4 42 0.00091 35.0 5.6 189 333-555 11-204 (243)
8 PF03083 MtN3_slv: Sugar efflu 44.4 15 0.00033 31.2 1.9 68 334-403 6-74 (87)
9 KOG2913 Predicted membrane pro 33.6 16 0.00034 38.4 0.4 42 472-516 166-207 (260)
10 PRK14748 kdpF potassium-transp 33.0 30 0.00065 24.9 1.6 21 446-466 7-27 (29)
11 COG2846 Regulator of cell morp 26.9 40 0.00087 34.5 1.9 29 497-526 177-205 (221)
12 PF05758 Ycf1: Ycf1; InterPro 26.5 59 0.0013 39.9 3.5 65 353-417 97-178 (929)
13 PF04193 PQ-loop: PQ loop repe 24.2 20 0.00043 28.5 -0.6 28 355-382 26-53 (61)
14 KOG3145 Cystine transporter Cy 23.3 16 0.00035 39.3 -1.6 73 488-563 137-231 (372)
15 PRK09174 F0F1 ATP synthase sub 21.3 79 0.0017 31.9 2.8 25 27-51 53-77 (204)
No 1
>KOG2489 consensus Transmembrane protein [General function prediction only]
Probab=100.00 E-value=2.2e-210 Score=1645.92 Aligned_cols=567 Identities=52% Similarity=0.880 Sum_probs=512.8
Q ss_pred CCCCCccccCCCCCCCcchhhhccCCchhHHHHHHHHHHHHHHHHHhcCCCC------CCC-CCccccccccCCCCCceE
Q 007700 1 MAPPPPAQAAGGGGGGQQQRQQQAGGLGQTITGVIRIAVFWYFASKFFAPKR------PAG-PESAQLMSNLFQRGEYLD 73 (592)
Q Consensus 1 ~~~~~~~~~~~~~~~~~q~~qQ~~~~~~~~~~~~~r~~~~~~~~~~f~~~~~------~~~-~~p~~~~~plf~~g~~lD 73 (592)
||-++++|| + ++|.|| |++|++++++++++.+.+-|+.+.||++++ |++ .++..++.|+|++|+.+|
T Consensus 1 ~a~~~~~~~-~----~~~~pq-p~~~~~~~i~~~i~~~fi~y~~s~ff~~~~~~~~~~~~~~~~~~~~~~n~fp~g~~~d 74 (592)
T KOG2489|consen 1 MASAAAPAA-A----QEQAPQ-PQGGFFQMIKGLISIAFISYMVSSFFRMSQLPTDRSCSGAAGCYQPALNLFPKGTLLD 74 (592)
T ss_pred CCcccCCCc-C----CCCCCC-ccccHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCccCCcCchhhcCCCCCeEE
Confidence 566665544 2 222233 346677777777777666777877777643 222 122235678999999999
Q ss_pred EEEEEeCCCC-CCCCCCCCceeEEeeCcccccccCCcceEEEEEecCchhhccCceEEEEEEEeecCCCCCCCCCCCCCC
Q 007700 74 MWLYVSEHEK-FNDFGNEGALIWHETNMPYAVWSRESTRTLSLKYYPTEALKNNGSLYVHVFFARSGYPPDPNDPEYQPL 152 (592)
Q Consensus 74 L~vy~S~~~~-~~~~~~~~~lvw~~~~~~ygdW~~~~~~~~~~~~~~p~~v~~NGSly~Hv~l~~~G~~~dp~~~~y~~~ 152 (592)
|+||+|+++. +.++++. .|+|++++++||||+++++++++.++++|++++||||||+|+|++++|.+|||+++-|.+.
T Consensus 75 L~vy~s~~~~~~~~f~~~-~li~~~~~l~y~dw~~d~~~~~~~~~~~p~~l~~NgslYlH~fl~~~G~~~d~~~~~~~~~ 153 (592)
T KOG2489|consen 75 LHVYLSESRSPFNTFNNI-ALIWNVKDLDYGDWTPDGSFEHDLNVKTPESLRNNGSLYLHVFLAKAGQSPDPRDPYYRDG 153 (592)
T ss_pred EEEEeccChhhhhccchh-hhhheecCcccccccCCCceEEeeecCCcHHHhcCCeEEEEEEeeccCCCCCccchhhccC
Confidence 9999999886 7777776 8999999999999999999999999999999999999999999999999999999978888
Q ss_pred eEEEEEEEeEEeeccccccccccccCCCCCC-ccccccccCCCCCCCCCCCCCCcceeeeeeceeEEEEecCCCCCcCCC
Q 007700 153 AVFGKTHSIVVYYPKSKADKRRSLLRNPKDS-EEAQPLVQAVDDPQGDSEDDGPVEWISFWKPNITINLVDDFTRYPSNA 231 (592)
Q Consensus 153 ~~~~~~~~Lt~Y~Pk~k~~k~~NLL~~~~~~-~e~q~~~~~~~~~~~~~~~~~~~~~vshw~Pnlti~lV~D~~~~~~~~ 231 (592)
..+|.++|||+|+ +++++|++|||+|+++. .+| +.+++ +....|++||||||++||+|+|+++|++++
T Consensus 154 ~~v~~~~~l~~y~-~~r~~kt~nLL~~e~e~~~~E-------~~kKa---~~~~~e~~shw~pnl~vnlv~D~~~~~k~~ 222 (592)
T KOG2489|consen 154 KTVHLVHPLNKYK-KPRAAKTFNLLTGESETQVDE-------KLKKA---ESKKVEPVSHWRPNLTVNLVDDHTRWVKGS 222 (592)
T ss_pred ceEEEEeehhhhc-ccchhhhhhhccCcchhcchh-------hhccc---hhccccchhcccCCceEEEeecCcccccCC
Confidence 8899999999999 44556899999998773 221 11222 223478999999999999999999999999
Q ss_pred CCCCccCCceecCCCCeeeceEEeecccccccceeeccCccceeeEEEEEeecchhHHHHHHHHHHHHHHHHHhCCCCcc
Q 007700 232 APPNIAPYLNVEPTTGNYFPTIFFNEFWLLRDKLIPINETVTELPLNLEVGPISMTKWQLFLQIDQSFQIHRSYGSMLEG 311 (592)
Q Consensus 232 vPp~i~~~~~~~~~~~~Y~Pi~~~n~fw~l~~~~~~iN~t~~~l~l~i~~~p~s~~k~~l~~~~~~~~~~~~~~g~~~~~ 311 (592)
|||++.+++.+++.++.|+||+|+|+||+|++||+|||||++++||+++|+|+|++|||||++++++.+.+.++| +.++
T Consensus 223 vPp~l~~~~~~~~~~~~YlPIlf~n~~wnl~kdl~pInet~~el~Ltv~y~P~sv~K~ql~~~~~~~~q~~~~~g-~~~k 301 (592)
T KOG2489|consen 223 VPPPLAPYLIFLPKGEHYLPILFFNEYWNLQKDLMPINETTKELPLTVTYYPLSVFKLQLYASQQMASQWLQSFG-FMEK 301 (592)
T ss_pred CCCccchhheecCCCCceeeeEEechhhhhhcceEEccccccceeeEEEEEechHHHHHHHHHHHHHHHHHHHhc-cccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999998888996 4579
Q ss_pred hhhHHHHHHhcCChhHHHHHHHHHHHHHHHHHhhhchhhhhhhcCCCCccccchhhhhhhhhhheeeeeeecCCcceEee
Q 007700 312 EADELKRVFLEGNPYLLVITMVVSLLHSVFDFLAFKNDIQFWNKNKSMEGLSAKSVVVNFICQLIVFLYLLDNDTSWMIL 391 (592)
Q Consensus 312 d~D~iK~~~~etnpylL~~T~~vs~lH~vFefLAFKnDI~fWr~~k~~~GlS~rtv~~n~~~q~iIfLYL~Dn~TS~~il 391 (592)
|.||+|++|+||||||||+|++||+||+|||||||||||||||+||||||||+|||+||||||+||||||||||||+||+
T Consensus 302 d~DEvK~~fleTN~yLL~vT~fVS~lH~vFdfLAFKNDIqFWn~rKsmeGLS~rsvl~~~F~s~IIflYllDneTs~mVl 381 (592)
T KOG2489|consen 302 DSDEVKGAFLETNPYLLAVTIFVSILHSVFDFLAFKNDIQFWNKRKSMEGLSVRSVLWRCFSSLIIFLYLLDNETSFMVL 381 (592)
T ss_pred chHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHHhcchHHHhccccccccccHHHHHHHHHHHHhhhheeecCCccEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccceeeeeeeeeeEEEEEEeeC----CCcCeEEEecCccccccchhhhHHHHHHHHHHHHHHHHHHhhhheeeeccc
Q 007700 392 ASSGVGCCIEFWKIGKAMHIEIDRS----GTIPMLRFRDRESYAGNKTKEYDDIAMKYLSGVLFFLAICSSIYSLMYERH 467 (592)
Q Consensus 392 ~~~gig~lIe~WKi~K~~~v~~~~~----g~~P~i~~~dk~s~~e~~T~eyD~~A~kYLs~~l~Pl~~gyaiYSL~Y~~h 467 (592)
+|+|||+|||+|||+|+++|+++|+ |.+||++|.|++||.|++|++||++|||||||+|+|||+|||||||+|.||
T Consensus 382 vs~gvG~~IE~WKi~K~m~v~id~~g~i~gv~pRl~f~dkgsysE~~Tk~yD~~A~kYLs~~L~PL~vg~aVYSLlY~~h 461 (592)
T KOG2489|consen 382 VSVGVGLLIELWKIKKAMKVEIDWSGLIPGVLPRLSFSDKGSYSESKTKEYDDQAMKYLSYLLFPLLVGGAVYSLLYVEH 461 (592)
T ss_pred EeccceeeeeeeecceEEEEEEecccccccccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 9999999999999999999999999 556799999999999999999999999999999999999999999999999
Q ss_pred cceeeehhhhhchhhhhcceecccceeeEeeeecccccCchhHHHHHHhhhhHHhhhhheecccccccccccccceehhh
Q 007700 468 KSWYSWILSSLTSCVYMFGFTMMCPQLFINYKLKSVAHLPWRQMTYKFLNTIIDDLFAFVIKMPTLHRLSVFRDDLVFLI 547 (592)
Q Consensus 468 ksWYSwii~sL~~~vY~FGFi~M~PQLfINYkLKSVAHLPwr~~~YK~lNTFIDDlFAFvIkMPtlHRlaCFRDDvVF~I 547 (592)
||||||+|+||+|+|||||||+||||||||||||||||||||||||||||||||||||||||||||||||||||||||+|
T Consensus 462 KsWYSWvLn~l~~~vy~FGFi~M~PQLFINYKLKSVAHLPWR~~tYKa~NTFIDDlFAFVIkMPt~hRl~CfRDDIVFlI 541 (592)
T KOG2489|consen 462 KSWYSWVLNSLYNGVYAFGFIFMLPQLFINYKLKSVAHLPWRAFTYKAFNTFIDDLFAFVIKMPTLHRLACFRDDIVFLI 541 (592)
T ss_pred ccHHHHHHHHHHhHHHHHHHHHhChHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccceEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcccccCcccccccccccccCCCCCCCcchhccch
Q 007700 548 YLYQRWIYKVDKTRVNEFGFAGEDDKVSDGTETDALISK 586 (592)
Q Consensus 548 yLYQRWiY~VD~~R~nEfG~~~e~~~~~~~~~~~~~~~~ 586 (592)
||||||+||||++|+||||+|||+++....+.||++.++
T Consensus 542 YLYQRWlYpVD~tRvNEfG~sgeee~~~~~~vegs~~s~ 580 (592)
T KOG2489|consen 542 YLYQRWLYPVDKTRVNEFGESGEEEAGTPLPVEGSETSS 580 (592)
T ss_pred eehhhhccccChhhhhhcccCccccCCCcCcccCCCCcc
Confidence 999999999999999999999999888766666644433
No 2
>PF05602 CLPTM1: Cleft lip and palate transmembrane protein 1 (CLPTM1); InterPro: IPR008429 Clefts of the lip and/or palate (CL/P) are some of the most common birth defects. They may be categorised into syndromic or non-syndromic types, with syndromic defects having an underlying chromosomal or teratogenic cause. Around 70% of clefts are non-syndromic and individuals have no typical physical or developmental abnormalities; these clefts generally show polygenetic behaviour and complex inheritance []. Studies have identified regions on chromosomes 19 and 11 which may be involved in non-syndromic cleft lip and palates; this included a novel gene on chromosome 19, cleft lip and palate-associated transmembrane protein 1 (CLPTM1) []. The Poliovirus receptor-related 1 gene (PVRL1), which is located on chromosome 11, has also been shown to associate with non-syndromic cleft lip and palates [, ]. CLPTM1 encodes a transmembrane protein and has strong homology to two Caenorhabditis elegans genes, suggesting that CLPTM1 may belong to a new gene family []. This family also contains the Homo sapiens cisplatin resistance related protein CRR9p which is associated with CDDP-induced apoptosis [].
Probab=100.00 E-value=2.6e-125 Score=1015.98 Aligned_cols=424 Identities=49% Similarity=0.901 Sum_probs=392.6
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhcCCCCCCCCC---------ccccccccCCCCCceEEEEEEeCCCCCCCCCCCCceeE
Q 007700 25 GGLGQTITGVIRIAVFWYFASKFFAPKRPAGPE---------SAQLMSNLFQRGEYLDMWLYVSEHEKFNDFGNEGALIW 95 (592)
Q Consensus 25 ~~~~~~~~~~~r~~~~~~~~~~f~~~~~~~~~~---------p~~~~~plf~~g~~lDL~vy~S~~~~~~~~~~~~~lvw 95 (592)
+++++++++++|+.+||++++.|+++++.+++. +..+++|+|+.|+++||+||+|+++.+....+.. ++|
T Consensus 2 s~~~~~i~~i~~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~g~~ldL~vy~S~~~~~~~~~~~~-lv~ 80 (438)
T PF05602_consen 2 SSFWSIIFLIYIFHSIWYFMSLFFGPQCSPSPNCGSSGTPSGNPIPLRNLFPKGQPLDLYVYLSESEDFDSFSDSS-LVW 80 (438)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCccccccCCCccccccCCCCCCCEEEEEEEECCCCcccccccc-eeE
Confidence 578899999999999999999999976543211 2347999999999999999999998875443333 999
Q ss_pred EeeCcccccccCCcceEEEEEecCchhhccCceEEEEEEEeecCCCCCCCCCCCCCCeEEEEEEEeEEeecccccccccc
Q 007700 96 HETNMPYAVWSRESTRTLSLKYYPTEALKNNGSLYVHVFFARSGYPPDPNDPEYQPLAVFGKTHSIVVYYPKSKADKRRS 175 (592)
Q Consensus 96 ~~~~~~ygdW~~~~~~~~~~~~~~p~~v~~NGSly~Hv~l~~~G~~~dp~~~~y~~~~~~~~~~~Lt~Y~Pk~k~~k~~N 175 (592)
++++++||+| .+.++.++++++|++++||||||+||+++++|.++||++++|++..++|+++|||+|+|++ .++++|
T Consensus 81 ~~~~~~y~~~--~~~~~~~~t~~lp~~~~nNGSLylHv~l~~~g~~~dp~~~~y~~~~~~~~~~~Lt~Y~~~~-~~~~~N 157 (438)
T PF05602_consen 81 SEKNFDYGDW--FERRNENLTFTLPESVRNNGSLYLHVFLTKSGFSPDPTDPNYDPSSVVHQSKPLTRYMPPK-KAKTKN 157 (438)
T ss_pred eecccccccC--CCCcceeEEECCCHHHhcCCEEEEEEEEecCCCCCCCcccccCCCceEEEEEeceEeccCc-cchhhc
Confidence 9999999999 5566669999999999999999999999999999999999999999999999999999777 778899
Q ss_pred ccCCCCCCccccccccCCCCCCCCCCCCCCcceeeeeeceeEEEEecCCCCCcCCCCCCCccCCceecCCCCe-eeceEE
Q 007700 176 LLRNPKDSEEAQPLVQAVDDPQGDSEDDGPVEWISFWKPNITINLVDDFTRYPSNAAPPNIAPYLNVEPTTGN-YFPTIF 254 (592)
Q Consensus 176 LL~~~~~~~e~q~~~~~~~~~~~~~~~~~~~~~vshw~Pnlti~lV~D~~~~~~~~vPp~i~~~~~~~~~~~~-Y~Pi~~ 254 (592)
||+|+++++++ . . .++..+.++++|||||+||++|+|++.|+.+++||++++++++++.++. |+||||
T Consensus 158 LL~~~~~~~~~---~-----~---~~~~~~~~~vshw~pnltI~lV~D~~~~~~~~iP~~i~~~i~~~~~~~~~Y~Pivy 226 (438)
T PF05602_consen 158 LLSGKSEEEEE---E-----S---EEAKEPVEPVSHWHPNLTINLVDDQTPYPKNQIPPEIRQYIRFNPDGQRVYLPIVY 226 (438)
T ss_pred CCCCCCccccc---h-----h---hhcccCCceeceeecceEEEEEccCCccccccCChhhHhhEEEccCCCccccCcEE
Confidence 99998876543 0 0 1113467899999999999999999999999999999999999999886 999999
Q ss_pred eecccccccceeeccCccceeeEEEEEeecchhHHHHHHHHHHHHHHHHHhCCCCcchhhHHHHHHhcCChhHHHHHHHH
Q 007700 255 FNEFWLLRDKLIPINETVTELPLNLEVGPISMTKWQLFLQIDQSFQIHRSYGSMLEGEADELKRVFLEGNPYLLVITMVV 334 (592)
Q Consensus 255 ~n~fw~l~~~~~~iN~t~~~l~l~i~~~p~s~~k~~l~~~~~~~~~~~~~~g~~~~~d~D~iK~~~~etnpylL~~T~~v 334 (592)
+||||++++||+|||+|++++||+|+|+|+|+|||||+++|++++++++++ |++++|+|++||||+|||||||++|++|
T Consensus 227 ~N~fw~l~~~l~~in~t~~~l~l~i~~~p~s~~k~~l~~~~~~~~~~~~~~-g~~~~~~d~~K~~~~etn~~lL~~t~~v 305 (438)
T PF05602_consen 227 VNDFWLLRKDLVPINETVKELPLTISYSPISLWKWQLYAQMEQSFKQQQQM-GFSEKDIDEIKRIFLETNPYLLALTFVV 305 (438)
T ss_pred echhhhhhhheeecCCCccceEEEEEEEecchHHHHHHHHHHHHHHHHHHh-CCCcccHHHHHHHHhcCCHhhhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999 5788999999999999999999999999
Q ss_pred HHHHHHHHHhhhchhhhhhhcCCCCccccchhhhhhhhhhheeeeeeecCCcceEeeeecccceeeeeeeeeeEEEEEEe
Q 007700 335 SLLHSVFDFLAFKNDIQFWNKNKSMEGLSAKSVVVNFICQLIVFLYLLDNDTSWMILASSGVGCCIEFWKIGKAMHIEID 414 (592)
Q Consensus 335 s~lH~vFefLAFKnDI~fWr~~k~~~GlS~rtv~~n~~~q~iIfLYL~Dn~TS~~il~~~gig~lIe~WKi~K~~~v~~~ 414 (592)
|+||+|||||||||||+|||+||||+|||+|||++|||||+||||||+|||||||||+++|||++||+|||+|+++++++
T Consensus 306 s~lH~~f~fLAFKnDi~fW~~~k~~~GlS~rtv~~~~~~~~iIfLYL~D~~ts~lil~~~gig~~ie~WKv~K~~~~~~~ 385 (438)
T PF05602_consen 306 SLLHSVFDFLAFKNDISFWRKRKSMEGLSVRTVLWNCFSQIIIFLYLLDNETSWLILVPSGIGLLIEAWKVTKALKVSID 385 (438)
T ss_pred HHHHHHHHHHhhhhHHHHHhccCCcccccHHHHHHHHHHHHheeeeEEeCCCcEEeehHhHhHHhHhheeeeEEEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCcCe-EEEecC--ccccccchhhhHHHHHHHHHHHHHHHHHHhhhheeee
Q 007700 415 RSGTIPM-LRFRDR--ESYAGNKTKEYDDIAMKYLSGVLFFLAICSSIYSLMY 464 (592)
Q Consensus 415 ~~g~~P~-i~~~dk--~s~~e~~T~eyD~~A~kYLs~~l~Pl~~gyaiYSL~Y 464 (592)
+.|.+|+ ++|+|| .|+.|++|+|||++|||||||+|+|||+|||||||+|
T Consensus 386 ~~~~~p~~~~~~d~~~~~~~e~~T~~yD~~a~kyl~~~l~Pl~~gyaiYsL~Y 438 (438)
T PF05602_consen 386 WNGFFPYRISFKDKGKLSYEESKTKEYDAEAMKYLSYVLYPLCIGYAIYSLLY 438 (438)
T ss_pred cCCCccceeeeccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHheeC
Confidence 9999998 999998 8999999999999999999999999999999999998
No 3
>PF04193 PQ-loop: PQ loop repeat
Probab=92.76 E-value=0.027 Score=45.03 Aligned_cols=48 Identities=23% Similarity=0.323 Sum_probs=41.9
Q ss_pred cceecccceeeEeeeecccccCchhHHHHHHhhhhHHhhhhheecccc
Q 007700 485 FGFTMMCPQLFINYKLKSVAHLPWRQMTYKFLNTIIDDLFAFVIKMPT 532 (592)
Q Consensus 485 FGFi~M~PQLfINYkLKSVAHLPwr~~~YK~lNTFIDDlFAFvIkMPt 532 (592)
+.++...||++.|||.||+.+|+.-++.--....+..-+++++.+.|.
T Consensus 12 ~~~~~~lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~~~~~~~~ 59 (61)
T PF04193_consen 12 LWIISFLPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVLYSILSNYPF 59 (61)
T ss_pred HHHHHHHhHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 445677899999999999999999999999988888888888877765
No 4
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=72.06 E-value=0.76 Score=32.23 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=20.0
Q ss_pred ecccceeeEeeeecccccCchhHH
Q 007700 488 TMMCPQLFINYKLKSVAHLPWRQM 511 (592)
Q Consensus 488 i~M~PQLfINYkLKSVAHLPwr~~ 511 (592)
+...||++-|||.||+..++--++
T Consensus 1 ~~~~PQi~~~~~~ks~~glS~~~~ 24 (32)
T smart00679 1 VSLLPQIIKNYRRKSTEGLSILFV 24 (32)
T ss_pred CcchhHHHHHHHcCCcCcCCHHHH
Confidence 357899999999999999975544
No 5
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=52.73 E-value=2.3 Score=43.11 Aligned_cols=37 Identities=22% Similarity=0.211 Sum_probs=27.3
Q ss_pred hhhhhchhhhhcceecccceeeEeeeecccccCchhH
Q 007700 474 ILSSLTSCVYMFGFTMMCPQLFINYKLKSVAHLPWRQ 510 (592)
Q Consensus 474 ii~sL~~~vY~FGFi~M~PQLfINYkLKSVAHLPwr~ 510 (592)
++..|...=-..+++--+||.+.|||-||..+++--.
T Consensus 138 ~l~~l~~iki~is~ikyiPQi~~Ny~~ksT~glSi~~ 174 (220)
T TIGR00951 138 FVTMLSYIKVAVTLVKYFPQAATNYHNKSTGQLSIIT 174 (220)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhcCCCCcCCHHH
Confidence 3444433444556778899999999999999998543
No 6
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=50.01 E-value=5.4 Score=40.48 Aligned_cols=46 Identities=20% Similarity=0.291 Sum_probs=31.4
Q ss_pred hhhhchhhhhcc-eecccceeeEeeeecccccCchhHHHHHHhhhhH
Q 007700 475 LSSLTSCVYMFG-FTMMCPQLFINYKLKSVAHLPWRQMTYKFLNTII 520 (592)
Q Consensus 475 i~sL~~~vY~FG-Fi~M~PQLfINYkLKSVAHLPwr~~~YK~lNTFI 520 (592)
++.+.|.+|..+ .+...||++-|||-||+..|+--++.-..+.-.+
T Consensus 3 iS~~lG~~~~~~~~~~~~PQi~~n~k~ks~~GlS~~~~~l~~~g~~~ 49 (220)
T TIGR00951 3 LSQILGWGYVAAWSISFYPQIIKNWRRKSAEGLSFDFVMLNLVGFTA 49 (220)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHhccccCCcCHHHHHHHHHHHHH
Confidence 344444444443 3457899999999999999998777654444333
No 7
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=45.37 E-value=42 Score=35.05 Aligned_cols=189 Identities=20% Similarity=0.218 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHhhhchhhhhhhcCCCCccccchhhhhhhhhhheeeeeeecCCcceEeeeecccceeeeeeeeeeEEEEE
Q 007700 333 VVSLLHSVFDFLAFKNDIQFWNKNKSMEGLSAKSVVVNFICQLIVFLYLLDNDTSWMILASSGVGCCIEFWKIGKAMHIE 412 (592)
Q Consensus 333 ~vs~lH~vFefLAFKnDI~fWr~~k~~~GlS~rtv~~n~~~q~iIfLYL~Dn~TS~~il~~~gig~lIe~WKi~K~~~v~ 412 (592)
+.+.+=+++-||+=.-..--|+||||.||.|.-==+..+++...=+.|=+=-++++++..-.|+|+.||.-=+.=
T Consensus 11 i~~~~is~~~fl~pv~tf~~I~KkkS~e~~s~~Pfl~~ll~~~lWl~YG~~~~~d~llitIN~~G~~ie~~Yi~~----- 85 (243)
T KOG1623|consen 11 ILGNIISFGVFLSPVPTFRRIRKKKSVEGFSSLPFLMGLLSCSLWLYYGLLKVHDYLLITINGIGLVIETVYISI----- 85 (243)
T ss_pred HHHHHHhHHHhhcCchhHHHhhcccCcCCCCCcCcHHHHHHHHHHHHhhhhccCceEEEEEehhcHHHHHHHHHH-----
Confidence 345555666777766677788999999999977767777776665566421122889999999999997432221
Q ss_pred EeeCCCcCeEEEecCccccccchhhhHHHHHHHHHHHHHHHHHHhhhheeeecccc-----ceeeehhhhhchhhhhcce
Q 007700 413 IDRSGTIPMLRFRDRESYAGNKTKEYDDIAMKYLSGVLFFLAICSSIYSLMYERHK-----SWYSWILSSLTSCVYMFGF 487 (592)
Q Consensus 413 ~~~~g~~P~i~~~dk~s~~e~~T~eyD~~A~kYLs~~l~Pl~~gyaiYSL~Y~~hk-----sWYSwii~sL~~~vY~FGF 487 (592)
++.+..+. +| . -.-..--+.++.++....|.+.-.+.+ ||..=+++ -++|+=.-
T Consensus 86 --------f~~ya~~k-----~~--~---~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~lG~vc~~~n---I~~~~sPL 144 (243)
T KOG1623|consen 86 --------FLYYAPKK-----KT--V---KIVLALVLGVIGLIILLTLLLFHDPERRVSVLGIVCAVFN---ISMFAAPL 144 (243)
T ss_pred --------HheecCch-----he--e---EeeehHHHHHHHHHHHHHHHhcCCcceeeeeeehhhhhhh---HHhhhccH
Confidence 11222110 00 0 000123345555666667777766655 44432221 12222222
Q ss_pred ecccceeeEeeeecccccCchhHHHHHHhhhhHHhhhhheecccccccccccccceehhhhhhhhccc
Q 007700 488 TMMCPQLFINYKLKSVAHLPWRQMTYKFLNTIIDDLFAFVIKMPTLHRLSVFRDDLVFLIYLYQRWIY 555 (592)
Q Consensus 488 i~M~PQLfINYkLKSVAHLPwr~~~YK~lNTFIDDlFAFvIkMPtlHRlaCFRDDvVF~IyLYQRWiY 555 (592)
.-|- .=-|.|||.-||.-.-.--++|...==+++++++.+.+- +.-. +=+++=+-|-++|
T Consensus 145 ~~m~----~VIktkSvE~mPf~Ls~a~fl~a~~W~lYGlli~D~~Ia-ipN~---iG~~l~~~QL~Ly 204 (243)
T KOG1623|consen 145 SVIR----KVIKTKSVEYMPFPLSFALFLVAVQWLLYGLLIKDFFIA-IPNV---LGFLLGLIQLILY 204 (243)
T ss_pred Hhhh----hheecCceeeechHHHHHHHHHHHHHHHHHHHhcCeEEE-cccH---HHHHHHHHHHHHh
Confidence 2222 334679999999988777777777666677666655443 1111 4455555565555
No 8
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=44.39 E-value=15 Score=31.25 Aligned_cols=68 Identities=21% Similarity=0.297 Sum_probs=54.2
Q ss_pred HHHHHHHHHHhhhchhhhhhhcCCCCccccchhhhhhhhhhheeeeeee-cCCcceEeeeecccceeeeee
Q 007700 334 VSLLHSVFDFLAFKNDIQFWNKNKSMEGLSAKSVVVNFICQLIVFLYLL-DNDTSWMILASSGVGCCIEFW 403 (592)
Q Consensus 334 vs~lH~vFefLAFKnDI~fWr~~k~~~GlS~rtv~~n~~~q~iIfLYL~-Dn~TS~~il~~~gig~lIe~W 403 (592)
++.+.++.-+++-=-++.-++++|+.+++|....+..++....-++|=+ .+ ++.|+++.++|+++.+.
T Consensus 6 ~~~~~~i~~~~spl~~i~~v~k~ks~~~~~~~~~~~~~~~~~~W~~YG~l~~--d~~i~~~N~~g~~~~~~ 74 (87)
T PF03083_consen 6 LASVSSIIMFLSPLPQIRQVIKTKSTGSVSFPPFLAMFFNCVLWLIYGILIN--DWPIIVPNVFGLVLSII 74 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCccceehhHHHhhhccHhhhhhhhcC--CeeEEeeHHHHHHHHHH
Confidence 3455566677777788888999999999999999999999988888744 22 45899999999887643
No 9
>KOG2913 consensus Predicted membrane protein [Function unknown]
Probab=33.57 E-value=16 Score=38.42 Aligned_cols=42 Identities=29% Similarity=0.356 Sum_probs=33.9
Q ss_pred eehhhhhchhhhhcceecccceeeEeeeecccccCchhHHHHHHh
Q 007700 472 SWILSSLTSCVYMFGFTMMCPQLFINYKLKSVAHLPWRQMTYKFL 516 (592)
Q Consensus 472 Swii~sL~~~vY~FGFi~M~PQLfINYkLKSVAHLPwr~~~YK~l 516 (592)
-|++++|-..+|.++= .||+.+|||.||++.+--.+|..-++
T Consensus 166 g~ilG~l~a~ly~~~r---IPQI~~n~~~~s~eGls~~~F~~~~~ 207 (260)
T KOG2913|consen 166 GAILGSLSALLYLGAR---IPQIILNHLRKSTEGLSLLAFAFNSL 207 (260)
T ss_pred HHHHHHHHHHHHcccc---cchhhhhhccCccchhHHHHHHHHHc
Confidence 3577777778888775 59999999999999998887766554
No 10
>PRK14748 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=33.03 E-value=30 Score=24.86 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHhhhheeeecc
Q 007700 446 LSGVLFFLAICSSIYSLMYER 466 (592)
Q Consensus 446 Ls~~l~Pl~~gyaiYSL~Y~~ 466 (592)
...+++-+++||-+|.|++-|
T Consensus 7 ~G~ilv~lLlgYLvyALi~aE 27 (29)
T PRK14748 7 TGVLLVFLLLGYLVYALINAE 27 (29)
T ss_pred HHHHHHHHHHHHHHHHHhCcc
Confidence 567899999999999999865
No 11
>COG2846 Regulator of cell morphogenesis and NO signaling [Cell division and chromosome partitioning]
Probab=26.88 E-value=40 Score=34.45 Aligned_cols=29 Identities=38% Similarity=0.579 Sum_probs=21.3
Q ss_pred eeeecccccCchhHHHHHHhhhhHHhhhhh
Q 007700 497 NYKLKSVAHLPWRQMTYKFLNTIIDDLFAF 526 (592)
Q Consensus 497 NYkLKSVAHLPwr~~~YK~lNTFIDDlFAF 526 (592)
||-+=-=|==.||+ +|+-||-||||++--
T Consensus 177 n~tpP~~AC~tWka-lY~gl~~~~dDl~~H 205 (221)
T COG2846 177 NYTPPEEACGTWKA-LYNGLNEFIDDLMEH 205 (221)
T ss_pred CCCCChHHHhHHHH-HHHHHHHHHHHHHHH
Confidence 55554455566887 499999999999753
No 12
>PF05758 Ycf1: Ycf1; InterPro: IPR008896 The chloroplast genomes of most higher plants contain two giant open reading frames designated ycf1 and ycf2. Although the function of Ycf1 is unknown, it is known to be an essential gene [].
Probab=26.50 E-value=59 Score=39.91 Aligned_cols=65 Identities=31% Similarity=0.412 Sum_probs=51.0
Q ss_pred hhcCCCCccccchhhhhh-hhhhh-------------eeeeeeecCCcceEeeeecccceeee---eeeeeeEEEEEEee
Q 007700 353 WNKNKSMEGLSAKSVVVN-FICQL-------------IVFLYLLDNDTSWMILASSGVGCCIE---FWKIGKAMHIEIDR 415 (592)
Q Consensus 353 Wr~~k~~~GlS~rtv~~n-~~~q~-------------iIfLYL~Dn~TS~~il~~~gig~lIe---~WKi~K~~~v~~~~ 415 (592)
.+.+++|.-+|++.+++| +++|+ +|=+||+=-+..++-++|+++|-||- +-|..+.+-+++..
T Consensus 97 ~~~~~s~rn~~i~~~Fl~~lifQLlNp~ilpss~l~RLvni~lFR~~nk~lFv~Ssf~GWliG~ilf~k~~~lv~~~i~~ 176 (929)
T PF05758_consen 97 PTTRNSIRNLSIQCVFLNNLIFQLLNPFILPSSTLARLVNIYLFRYNNKMLFVTSSFVGWLIGHILFMKWVKLVLVWIEQ 176 (929)
T ss_pred cccccccccchhHHHHhhhHHHHhccchhcccHHHHHHHhheeEeecCeeeeeHHHHHHHHHHHHHHHHHHHHhEEEEec
Confidence 478899999999988877 77775 23367776677889999999998875 67888888888877
Q ss_pred CC
Q 007700 416 SG 417 (592)
Q Consensus 416 ~g 417 (592)
+.
T Consensus 177 ~~ 178 (929)
T PF05758_consen 177 NS 178 (929)
T ss_pred CC
Confidence 63
No 13
>PF04193 PQ-loop: PQ loop repeat
Probab=24.24 E-value=20 Score=28.46 Aligned_cols=28 Identities=32% Similarity=0.411 Sum_probs=24.3
Q ss_pred cCCCCccccchhhhhhhhhhheeeeeee
Q 007700 355 KNKSMEGLSAKSVVVNFICQLIVFLYLL 382 (592)
Q Consensus 355 ~~k~~~GlS~rtv~~n~~~q~iIfLYL~ 382 (592)
++|+.+|+|.-+++.+++..++.++|.+
T Consensus 26 k~ks~~glS~~~~~l~~~g~~~~~~~~~ 53 (61)
T PF04193_consen 26 KRKSTGGLSLWFLLLWLIGSILWVLYSI 53 (61)
T ss_pred HccccccccHHHHHHHHHHHHHHHHHHH
Confidence 3577799999999999999998888766
No 14
>KOG3145 consensus Cystine transporter Cystinosin [Amino acid transport and metabolism]
Probab=23.30 E-value=16 Score=39.26 Aligned_cols=73 Identities=27% Similarity=0.341 Sum_probs=46.8
Q ss_pred ecccceeeEeeeecccccCchhHHHHHHhhhh--------H-Hhhhhheecccc-----cccccccccceeh--------
Q 007700 488 TMMCPQLFINYKLKSVAHLPWRQMTYKFLNTI--------I-DDLFAFVIKMPT-----LHRLSVFRDDLVF-------- 545 (592)
Q Consensus 488 i~M~PQLfINYkLKSVAHLPwr~~~YK~lNTF--------I-DDlFAFvIkMPt-----lHRlaCFRDDvVF-------- 545 (592)
|.|-||++.|||=|||..|..-..| ||+- + -=+|.-.|+=-- +-|.-.--.|++|
T Consensus 137 ISfYPqii~N~RrKSv~gLnfDFv~---LNl~Gfs~y~ifn~~ly~~~~iq~~y~~~~p~g~~pv~~nDv~fslHa~lmt 213 (372)
T KOG3145|consen 137 ISFYPQIILNWRRKSVVGLNFDFVM---LNLTGFSAYSIFNFLLYYCPKIQNQYDTSYPLGVPPVTLNDVVFSLHAVLMT 213 (372)
T ss_pred eeechHHHhhhhhcceeccccceee---ehhhhhHHHHHHHHHHHhcHHhccceeccCCCCCCccchhhhhhhHHHHHHH
Confidence 5688999999999999999876543 3331 0 011111111111 2234455668888
Q ss_pred hhhhhhhcccccCccccc
Q 007700 546 LIYLYQRWIYKVDKTRVN 563 (592)
Q Consensus 546 ~IyLYQRWiY~VD~~R~n 563 (592)
+|-|.|+.+|.=+..|+.
T Consensus 214 ~Iti~Qc~~yeR~~q~vs 231 (372)
T KOG3145|consen 214 VITILQCFFYERGWQRVS 231 (372)
T ss_pred HHHHHHHHhhhhcccccc
Confidence 578899999988888874
No 15
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=21.26 E-value=79 Score=31.89 Aligned_cols=25 Identities=24% Similarity=0.470 Sum_probs=20.3
Q ss_pred chhHHHHHHHHHHHHHHHHHhcCCC
Q 007700 27 LGQTITGVIRIAVFWYFASKFFAPK 51 (592)
Q Consensus 27 ~~~~~~~~~r~~~~~~~~~~f~~~~ 51 (592)
.+.+++.++-++++|+++++|+-||
T Consensus 53 ~~~l~w~~I~FliL~~lL~k~~~~p 77 (204)
T PRK09174 53 ASQLLWLAITFGLFYLFMSRVILPR 77 (204)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478889999999999999887553
Done!