Query 007700
Match_columns 592
No_of_seqs 177 out of 274
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 08:18:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007700.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007700hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xk0_A Polycomb protein PCL; t 15.4 51 0.0017 27.1 1.1 7 1-7 3-9 (69)
2 4b8c_D Glucose-repressible alc 8.5 76 0.0026 35.6 0.0 7 451-457 596-602 (727)
3 3tgu_G UQCRQ, mitochondrial ub 7.7 2.5E+02 0.0084 23.5 2.8 24 444-467 43-66 (81)
4 2a1d_D Staphylocoagulase; prot 7.5 1.2E+02 0.0043 31.4 1.1 17 511-527 214-230 (329)
5 1nu7_D Staphylocoagulase; thro 7.1 1.3E+02 0.0046 30.6 1.1 16 510-525 213-228 (282)
6 1tlq_A Hypothetical protein YP 7.0 1.1E+02 0.0038 29.5 0.4 13 516-528 139-151 (189)
7 2aze_B Transcription factor E2 6.3 1.2E+02 0.004 26.5 0.1 15 533-547 56-70 (106)
8 2wul_A Glutaredoxin related pr 5.7 1.5E+02 0.0053 26.0 0.6 9 491-499 77-85 (118)
9 1pp9_G Ubiquinol-cytochrome C 5.5 4.1E+02 0.014 22.1 3.0 21 446-466 45-65 (81)
10 3cx5_H Cytochrome B-C1 complex 5.0 2.9E+02 0.0099 23.7 1.8 13 448-460 57-69 (93)
No 1
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=15.41 E-value=51 Score=27.08 Aligned_cols=7 Identities=71% Similarity=1.084 Sum_probs=3.3
Q ss_pred CCCCCcc
Q 007700 1 MAPPPPA 7 (592)
Q Consensus 1 ~~~~~~~ 7 (592)
|+||++|
T Consensus 3 m~pp~~a 9 (69)
T 2xk0_A 3 MAPPVAA 9 (69)
T ss_dssp SSCSSSS
T ss_pred CCCCCCC
Confidence 4454443
No 2
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=8.49 E-value=76 Score=35.58 Aligned_cols=7 Identities=43% Similarity=0.937 Sum_probs=0.0
Q ss_pred HHHHHHh
Q 007700 451 FFLAICS 457 (592)
Q Consensus 451 ~Pl~~gy 457 (592)
.|+++|+
T Consensus 596 ~pvIl~G 602 (727)
T 4b8c_D 596 FPVLICG 602 (727)
T ss_dssp -------
T ss_pred CceEEec
Confidence 3555554
No 3
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=7.71 E-value=2.5e+02 Score=23.51 Aligned_cols=24 Identities=13% Similarity=-0.103 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHhhhheeeeccc
Q 007700 444 KYLSGVLFFLAICSSIYSLMYERH 467 (592)
Q Consensus 444 kYLs~~l~Pl~~gyaiYSL~Y~~h 467 (592)
.-+-+++.|++++|.||..--++|
T Consensus 43 ~q~l~v~pPfi~~Y~i~~Wa~~~n 66 (81)
T 3tgu_G 43 SQVFKVAPPFLGAYLLYSWGTQEF 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHhhHHHHHHHHHHHHHHHHH
Confidence 457889999999999987544433
No 4
>2a1d_D Staphylocoagulase; prothrombin activator, hydrolase-hydrolase inhibitor complex; HET: 0G6 NDG; 3.50A {Staphylococcus aureus}
Probab=7.51 E-value=1.2e+02 Score=31.38 Aligned_cols=17 Identities=35% Similarity=0.423 Sum_probs=13.5
Q ss_pred HHHHHhhhhHHhhhhhe
Q 007700 511 MTYKFLNTIIDDLFAFV 527 (592)
Q Consensus 511 ~~YK~lNTFIDDlFAFv 527 (592)
=|=+=|||+|||.|-=+
T Consensus 214 e~ieDLeSIIDdFF~ei 230 (329)
T 2a1d_D 214 EMIKDLESIIEDFFIET 230 (329)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 45678999999998644
No 5
>1nu7_D Staphylocoagulase; thrombin non-proteolytic activator, hydrolase-hydrolase INHI complex, protein binding; HET: 0ZJ; 2.20A {Staphylococcus aureus} SCOP: a.8.6.1 a.8.6.1 PDB: 1nu9_C*
Probab=7.09 E-value=1.3e+02 Score=30.56 Aligned_cols=16 Identities=38% Similarity=0.561 Sum_probs=12.7
Q ss_pred HHHHHHhhhhHHhhhh
Q 007700 510 QMTYKFLNTIIDDLFA 525 (592)
Q Consensus 510 ~~~YK~lNTFIDDlFA 525 (592)
.=|=+=|||+|||.|-
T Consensus 213 ke~ieDLesIIDdFF~ 228 (282)
T 1nu7_D 213 KEMIKDLESIIEDFFI 228 (282)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3456789999999985
No 6
>1tlq_A Hypothetical protein YPJQ; structural genomics, NYSGXRC, T1519 protein structure initiative, NEW YORK SGX research center structural genomics; 2.40A {Bacillus subtilis} SCOP: a.195.1.1
Probab=6.98 E-value=1.1e+02 Score=29.54 Aligned_cols=13 Identities=31% Similarity=0.608 Sum_probs=9.7
Q ss_pred hhhhHHhhhhhee
Q 007700 516 LNTIIDDLFAFVI 528 (592)
Q Consensus 516 lNTFIDDlFAFvI 528 (592)
.|||+||+-|=++
T Consensus 139 v~tFLDDiVgaia 151 (189)
T 1tlq_A 139 IHTFLDDIVAALA 151 (189)
T ss_dssp CCTTHHHHHHHHH
T ss_pred ccccHHHHHHHHH
Confidence 4799999966554
No 7
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=6.26 E-value=1.2e+02 Score=26.54 Aligned_cols=15 Identities=20% Similarity=0.406 Sum_probs=12.0
Q ss_pred cccccccccceehhh
Q 007700 533 LHRLSVFRDDLVFLI 547 (592)
Q Consensus 533 lHRlaCFRDDvVF~I 547 (592)
++.|.||+||.||-|
T Consensus 56 i~~i~~f~~qtviaI 70 (106)
T 2aze_B 56 LRSIADPAEQMVMVI 70 (106)
T ss_dssp HHTTSCTTTEEEEEE
T ss_pred HhcCcCCCcCeEEEE
Confidence 467789999998766
No 8
>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}
Probab=5.74 E-value=1.5e+02 Score=25.98 Aligned_cols=9 Identities=33% Similarity=0.737 Sum_probs=6.9
Q ss_pred cceeeEeee
Q 007700 491 CPQLFINYK 499 (592)
Q Consensus 491 ~PQLfINYk 499 (592)
+||+|||=+
T Consensus 77 vPqIFI~g~ 85 (118)
T 2wul_A 77 IPQVYLNGE 85 (118)
T ss_dssp SCEEEETTE
T ss_pred CCeEeECCE
Confidence 688888855
No 9
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=5.53 E-value=4.1e+02 Score=22.09 Aligned_cols=21 Identities=10% Similarity=-0.010 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHhhhheeeecc
Q 007700 446 LSGVLFFLAICSSIYSLMYER 466 (592)
Q Consensus 446 Ls~~l~Pl~~gyaiYSL~Y~~ 466 (592)
+-+++.|++++|.+|..--++
T Consensus 45 ~l~v~pPfv~~Y~i~~Wa~~~ 65 (81)
T 1pp9_G 45 ILRVAPPFVAFYLVYTWGTQE 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeeehhHHHHHHHHHHHHHH
Confidence 348899999999998754443
No 10
>3cx5_H Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.23.13.1 PDB: 1kb9_H* 1kyo_H* 1p84_H* 1ezv_G* 3cxh_H* 2ibz_G*
Probab=4.97 E-value=2.9e+02 Score=23.73 Aligned_cols=13 Identities=23% Similarity=0.015 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhh
Q 007700 448 GVLFFLAICSSIY 460 (592)
Q Consensus 448 ~~l~Pl~~gyaiY 460 (592)
+++.|++++|.||
T Consensus 57 ~v~pPfv~~Y~i~ 69 (93)
T 3cx5_H 57 YVLIPAGIYWYWW 69 (93)
T ss_dssp HHHHHHHHHHHHH
T ss_pred EEechHhHHHHHH
Done!