Query 007700
Match_columns 592
No_of_seqs 177 out of 274
Neff 4.7
Searched_HMMs 13730
Date Mon Mar 25 08:19:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007700.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/007700hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2azeb1 e.63.1.2 (B:201-301) T 17.2 14 0.00098 30.3 0.1 23 524-547 43-65 (101)
2 d1nu9c2 a.8.6.1 (C:146-281) St 13.4 28 0.002 29.8 1.1 14 512-525 69-82 (136)
3 d1iloa_ c.47.1.1 (A:) MTH985, 13.0 36 0.0026 26.3 1.5 29 488-516 48-76 (77)
4 d1jb0i_ f.23.17.1 (I:) Subunit 7.1 59 0.0043 21.9 0.6 14 442-455 6-19 (38)
5 d1vqoe2 d.141.1.1 (E:80-172) R 6.2 74 0.0054 25.5 0.9 14 497-510 2-16 (93)
6 d1ppjg_ f.23.13.1 (G:) Ubiquin 6.0 65 0.0048 24.8 0.4 21 446-466 45-65 (75)
7 d1a81a1 d.93.1.1 (A:9-137) Syk 4.8 86 0.0063 25.7 0.4 43 502-544 1-53 (129)
8 d1v54g_ f.23.2.1 (G:) Mitochon 4.7 1.6E+02 0.012 22.9 2.0 26 443-468 16-42 (84)
9 d3cx5h1 f.23.13.1 (H:2-94) Ubi 4.4 1.6E+02 0.012 23.3 1.8 20 446-465 55-74 (93)
10 d1q5za_ a.196.1.1 (A:) Invasio 4.2 56 0.0041 27.5 -1.2 24 486-520 11-34 (145)
No 1
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.17 E-value=14 Score=30.26 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=16.5
Q ss_pred hhheecccccccccccccceehhh
Q 007700 524 FAFVIKMPTLHRLSVFRDDLVFLI 547 (592)
Q Consensus 524 FAFvIkMPtlHRlaCFRDDvVF~I 547 (592)
.|||-. ==+++|+||+|+.||.|
T Consensus 43 ~ayVT~-~Di~~i~~f~~~tviaI 65 (101)
T d2azeb1 43 LAYVTC-QDLRSIADPAEQMVMVI 65 (101)
T ss_dssp HCEEEH-HHHHTTSCTTTEEEEEE
T ss_pred CCccCH-HHHhhCCCcccceEEEE
Confidence 455522 24589999999999976
No 2
>d1nu9c2 a.8.6.1 (C:146-281) Staphylocoagulase {Staphylococcus aureus [TaxId: 1280]}
Probab=13.37 E-value=28 Score=29.79 Aligned_cols=14 Identities=43% Similarity=0.653 Sum_probs=11.5
Q ss_pred HHHHhhhhHHhhhh
Q 007700 512 TYKFLNTIIDDLFA 525 (592)
Q Consensus 512 ~YK~lNTFIDDlFA 525 (592)
|=+=||++|||.|-
T Consensus 69 m~~DLeSIIDdFF~ 82 (136)
T d1nu9c2 69 MIKDLESIIEDFFI 82 (136)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 55679999999885
No 3
>d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=12.96 E-value=36 Score=26.30 Aligned_cols=29 Identities=21% Similarity=0.249 Sum_probs=24.0
Q ss_pred ecccceeeEeeeecccccCchhHHHHHHh
Q 007700 488 TMMCPQLFINYKLKSVAHLPWRQMTYKFL 516 (592)
Q Consensus 488 i~M~PQLfINYkLKSVAHLPwr~~~YK~l 516 (592)
+|.||.|.||=++++.-..|=+.=+=+.|
T Consensus 48 VmstPalvIdg~vv~~G~vPs~~ei~~~L 76 (77)
T d1iloa_ 48 LTALPGLAVDGELKIMGRVASKEEIKKIL 76 (77)
T ss_dssp CSSSSCEEETTEEEECSSCCCHHHHHHHC
T ss_pred CcCCCEEEECCEEEEEecCCCHHHHHHHh
Confidence 68999999999999999999776554444
No 4
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=7.06 E-value=59 Score=21.90 Aligned_cols=14 Identities=14% Similarity=0.249 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHH
Q 007700 442 AMKYLSGVLFFLAI 455 (592)
Q Consensus 442 A~kYLs~~l~Pl~~ 455 (592)
|-.||-|+++|++.
T Consensus 6 AAsyLPwI~iPvv~ 19 (38)
T d1jb0i_ 6 AASFLPWIFIPVVC 19 (38)
T ss_dssp TTTTHHHHHHHHHH
T ss_pred HHHhcchhHHHHHH
Confidence 34599999999874
No 5
>d1vqoe2 d.141.1.1 (E:80-172) Ribosomal protein L6 {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=6.20 E-value=74 Score=25.48 Aligned_cols=14 Identities=21% Similarity=0.629 Sum_probs=10.6
Q ss_pred eeeeccc-ccCchhH
Q 007700 497 NYKLKSV-AHLPWRQ 510 (592)
Q Consensus 497 NYkLKSV-AHLPwr~ 510 (592)
-||||+| ||.|-.+
T Consensus 2 ~Ykmk~vyaHFPi~v 16 (93)
T d1vqoe2 2 EYGMEVFYSHFPMQV 16 (93)
T ss_dssp EEEEEEECSSSCCEE
T ss_pred EEEEEEEEEeCCeEE
Confidence 3889988 8888643
No 6
>d1ppjg_ f.23.13.1 (G:) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.97 E-value=65 Score=24.78 Aligned_cols=21 Identities=10% Similarity=-0.010 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHhhhheeeecc
Q 007700 446 LSGVLFFLAICSSIYSLMYER 466 (592)
Q Consensus 446 Ls~~l~Pl~~gyaiYSL~Y~~ 466 (592)
.-|++-|++++|.+|..--++
T Consensus 45 ~l~v~PPfi~~Y~iy~W~~~~ 65 (75)
T d1ppjg_ 45 ILRVAPPFVAFYLVYTWGTQE 65 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEcCHHHHHHHHHHHHHHH
Confidence 557799999999999754443
No 7
>d1a81a1 d.93.1.1 (A:9-137) Syk tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.80 E-value=86 Score=25.72 Aligned_cols=43 Identities=21% Similarity=0.182 Sum_probs=21.8
Q ss_pred ccccCch------hHHHHHHhhhhHHhhhhheecccc----ccccccccccee
Q 007700 502 SVAHLPW------RQMTYKFLNTIIDDLFAFVIKMPT----LHRLSVFRDDLV 544 (592)
Q Consensus 502 SVAHLPw------r~~~YK~lNTFIDDlFAFvIkMPt----lHRlaCFRDDvV 544 (592)
|++|||| |.-.=+.|..=-..=-+|+|+--. .+-|+.-.++-|
T Consensus 1 ~~~~~PWyhg~isR~~Ae~lL~~~g~~dG~FLVR~S~~~~g~y~LSv~~~~~v 53 (129)
T d1a81a1 1 SANHLPFFFGNITREEAEDYLVQGGMSDGLYLLRQSRNYLGGFALSVAHGRKA 53 (129)
T ss_dssp CTTSSTTBCSSCCHHHHHHHHHHTTCCTTEEEEEECSSSTTCEEEEEEETTEE
T ss_pred CCCCCCcccCCCCHHHHHHHHHhcCCCCccEEEEccCCCCcceEEEeeecccc
Confidence 7899999 333333332211122678887532 234554444543
No 8
>d1v54g_ f.23.2.1 (G:) Mitochondrial cytochrome c oxidase subunit VIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.69 E-value=1.6e+02 Score=22.92 Aligned_cols=26 Identities=12% Similarity=0.189 Sum_probs=18.6
Q ss_pred HHHHHH-HHHHHHHHhhhheeeecccc
Q 007700 443 MKYLSG-VLFFLAICSSIYSLMYERHK 468 (592)
Q Consensus 443 ~kYLs~-~l~Pl~~gyaiYSL~Y~~hk 468 (592)
.|-|++ +.+|+|+..+++..+..+|.
T Consensus 16 Wkkis~~va~P~i~l~~~n~~~~~~h~ 42 (84)
T d1v54g_ 16 WRFLTFGLALPSVALCTLNSWLHSGHR 42 (84)
T ss_dssp HHHHHHHTHHHHHHHHHHHHTTSCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 455777 56799888888777766664
No 9
>d3cx5h1 f.23.13.1 (H:2-94) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.37 E-value=1.6e+02 Score=23.33 Aligned_cols=20 Identities=20% Similarity=-0.061 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHhhhheeeec
Q 007700 446 LSGVLFFLAICSSIYSLMYE 465 (592)
Q Consensus 446 Ls~~l~Pl~~gyaiYSL~Y~ 465 (592)
+-|++.|++++|.+|.---+
T Consensus 55 ~lyv~PPfi~~Y~iy~Wa~~ 74 (93)
T d3cx5h1 55 FLYVLIPAGIYWYWWKNGNE 74 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEcchHHHHHHHHHHHHH
Confidence 56799999999999865433
No 10
>d1q5za_ a.196.1.1 (A:) Invasion protein A (SipA) , C-terminal actin binding domain {Salmonella typhimurium [TaxId: 90371]}
Probab=4.24 E-value=56 Score=27.54 Aligned_cols=24 Identities=25% Similarity=0.487 Sum_probs=0.0
Q ss_pred ceecccceeeEeeeecccccCchhHHHHHHhhhhH
Q 007700 486 GFTMMCPQLFINYKLKSVAHLPWRQMTYKFLNTII 520 (592)
Q Consensus 486 GFi~M~PQLfINYkLKSVAHLPwr~~~YK~lNTFI 520 (592)
||+.|+| ||+|| |-|-+.+=|||.
T Consensus 11 gfLs~iP---------svt~m--~smhf~Are~fL 34 (145)
T d1q5za_ 11 SFLSTVP---------SVTNM--HSMHFDARETFL 34 (145)
T ss_dssp TTGGGSC---------CHHHH--TCTTCCHHHHHH
T ss_pred Cceeecc---------hHHHH--HHHhhhHHHHHH
Done!