Query 007702
Match_columns 592
No_of_seqs 591 out of 4398
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 08:22:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007702.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007702hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 4E-30 1.4E-34 279.7 11.2 300 5-324 11-352 (491)
2 3o7q_A L-fucose-proton symport 99.8 1.4E-20 4.8E-25 200.8 19.1 187 3-189 23-237 (438)
3 1pw4_A Glycerol-3-phosphate tr 99.8 5.9E-20 2E-24 196.6 11.1 184 4-190 26-214 (451)
4 2gfp_A EMRD, multidrug resista 99.8 2.3E-18 7.7E-23 180.3 14.8 180 8-189 2-181 (375)
5 4aps_A DI-OR tripeptide H+ sym 99.7 1E-16 3.4E-21 174.0 20.0 171 10-182 17-196 (491)
6 2xut_A Proton/peptide symporte 99.6 1.5E-14 5.1E-19 158.3 18.6 166 12-179 18-195 (524)
7 4gc0_A D-xylose-proton symport 99.3 4E-11 1.4E-15 129.5 18.4 176 16-198 287-472 (491)
8 1pw4_A Glycerol-3-phosphate tr 99.3 1.3E-10 4.4E-15 123.8 19.7 169 11-181 257-432 (451)
9 2cfq_A Lactose permease; trans 99.2 2.1E-10 7.1E-15 122.0 14.8 146 41-188 259-405 (417)
10 2cfq_A Lactose permease; trans 99.1 2.6E-11 9E-16 128.9 3.1 168 16-186 17-191 (417)
11 3o7q_A L-fucose-proton symport 99.1 3.6E-09 1.2E-13 112.2 18.8 147 23-174 275-424 (438)
12 4aps_A DI-OR tripeptide H+ sym 99.0 1.3E-09 4.6E-14 117.6 12.4 158 26-186 303-475 (491)
13 2xut_A Proton/peptide symporte 98.4 2.1E-07 7.2E-12 101.2 6.3 143 42-186 336-506 (524)
14 2gfp_A EMRD, multidrug resista 98.2 1.8E-07 6.3E-12 97.0 1.2 148 15-167 208-361 (375)
15 2l2t_A Receptor tyrosine-prote 22.4 1.5E+02 0.0052 20.0 4.6 31 556-586 3-33 (44)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.96 E-value=4e-30 Score=279.68 Aligned_cols=300 Identities=27% Similarity=0.444 Sum_probs=226.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--------chHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHH
Q 007702 5 ALVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLG--------TTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLIL 76 (592)
Q Consensus 5 ~~~~~~~~l~~~~~g~~~~~~~~~~~~i~~~~~~s--------~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~ 76 (592)
+.++++++++.+++|||.++++++++.++++|+.+ +...+++.+++.+|.++|++++|+++||+|||+++++
T Consensus 11 ~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~ 90 (491)
T 4gc0_A 11 FSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKI 90 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 45566778999999999999999999999988542 2567899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH------------------hhccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHH
Q 007702 77 SSVLYFVSGLVML------------------WSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFT 138 (592)
Q Consensus 77 ~~~l~~i~~~~~~------------------~s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~ 138 (592)
+.+++++++++++ +++++++++++|+++|++.|+..+.+++|++|++|+++|++..++.+.+
T Consensus 91 ~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~ 170 (491)
T 4gc0_A 91 AAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFA 170 (491)
T ss_dssp HHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhh
Confidence 9999999999998 4789999999999999999999999999999999999999999999999
Q ss_pred HhhHHHHHHHHHHHhHhc------CCCchhHHHHHHHHHHHHHHHHHHhhccCChhHHHhcCcHHHHHHHHHHHhCCCCc
Q 007702 139 GSGGMFLAYCMVFGMSLL------ASPSWRLMLGVLSIPALLYFAFAVFFLPESPRWLVSKGKMLEAKQVLQRLRGREDV 212 (592)
Q Consensus 139 ~~~G~~l~~~~~~~~~~~------~~~~Wr~~f~i~~i~~~~~~~l~~~~~pEsP~~l~~~~~~~ea~~~l~~l~~~~~~ 212 (592)
..+|.+++++..+..... ....||+++.+..++.++ .++..+++||||+|+..+++.+++++.+++.+.+++.
T Consensus 171 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~ 249 (491)
T 4gc0_A 171 IIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALL-FLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLA 249 (491)
T ss_dssp HHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHH-HHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhh-hhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchh
Confidence 999999987776655432 235799999888877776 4456788999999999999999999999988766544
Q ss_pred hHHHHHHHHHHhcccchhhhHhhhCCCCCCCCCCCCCccccchhhcccc-cceeeeeccccCccccc-----hhhccccc
Q 007702 213 SGEMALLVEGLGIGGETSIEEYIIGPGDELADGEEPTDEKDKIRLYGPE-EGLSWVAKPVTGQSSLA-----LVSRQGSL 286 (592)
Q Consensus 213 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~-~~~~~~~~~lsG~~~v~-----~~~~~~~~ 286 (592)
..+..+..+..... .+. .......+.++.. .....++++++|.+.+. +....+..
T Consensus 250 ~~~~~~~~~~~~~~---------~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (491)
T 4gc0_A 250 TQAVQEIKHSLDHG---------RKT----------GGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGAS 310 (491)
T ss_dssp HHHHHHHHHHHHHH---------HHH----------TTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHHhh---------hhh----------hhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCC
Confidence 43333222211000 000 0000111122222 45666778888877654 11111110
Q ss_pred ccc--cCcchhhHHHHHhhccc--cCCCCCCccccccCCCCc
Q 007702 287 ANQ--SVPLMDPLVTLFGSVHE--KLPESGSMRSTLFPTFGS 324 (592)
Q Consensus 287 ~~~--~~~~~~~~v~l~gs~~~--~id~~GRr~~~l~~~~gs 324 (592)
... .......++.+++++.. ++||+|||+.++.+..+.
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~ 352 (491)
T 4gc0_A 311 TDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGM 352 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHH
Confidence 000 11345566777777777 999999999988776654
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.85 E-value=1.4e-20 Score=200.85 Aligned_cols=187 Identities=15% Similarity=0.084 Sum_probs=161.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHH
Q 007702 3 GAALVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYF 82 (592)
Q Consensus 3 ~~~~~~~~~~l~~~~~g~~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~ 82 (592)
+.+...+.+++..+..+++....++.+|.+.+++|++..+.+++.+++.++..++.++.|+++||+|||++++++.++.+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~ 102 (438)
T 3o7q_A 23 SYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYA 102 (438)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHH
Confidence 44667777888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH---HhhccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCC
Q 007702 83 VSGLVM---LWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASP 159 (592)
Q Consensus 83 i~~~~~---~~s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~ 159 (592)
++.+++ .++++++.++++|++.|++.|...+....+++|++|+++|++.+++.+.+..+|..+++.+..........
T Consensus 103 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~ 182 (438)
T 3o7q_A 103 LGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVP 182 (438)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSC
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999 88899999999999999999999999999999999999999999999999999999996554333212222
Q ss_pred c------------------------hhHHHHHHHHHHHHHHHHHHh-hccCChhH
Q 007702 160 S------------------------WRLMLGVLSIPALLYFAFAVF-FLPESPRW 189 (592)
Q Consensus 160 ~------------------------Wr~~f~i~~i~~~~~~~l~~~-~~pEsP~~ 189 (592)
. ||++|++.+++.++..++.++ ..||+++.
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 237 (438)
T 3o7q_A 183 HQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD 237 (438)
T ss_dssp CCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTT
T ss_pred cccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccc
Confidence 2 999998777766654444333 36777653
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.80 E-value=5.9e-20 Score=196.62 Aligned_cols=184 Identities=16% Similarity=0.102 Sum_probs=166.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHH
Q 007702 4 AALVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFV 83 (592)
Q Consensus 4 ~~~~~~~~~l~~~~~g~~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i 83 (592)
.+..+..++++.+..+++...+.+.+|.+.+++ .+..+.+++.+++.++..++.+++|+++||+|||++++++.++.++
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~ 104 (451)
T 1pw4_A 26 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAA 104 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHH
Confidence 356677888889999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh----hccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCC
Q 007702 84 SGLVMLW----SPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASP 159 (592)
Q Consensus 84 ~~~~~~~----s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~ 159 (592)
+.+++++ +++++.++++|++.|++.+...+...++++|++|+++|++.+++.+.+..+|..+++.+. ..+.+..
T Consensus 105 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~--~~l~~~~ 182 (451)
T 1pw4_A 105 VMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLF--LLGMAWF 182 (451)
T ss_dssp HHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHH--HHHHHHT
T ss_pred HHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHH--HHHHHHh
Confidence 9999999 999999999999999999999999999999999999999999999999999999885544 2223445
Q ss_pred c-hhHHHHHHHHHHHHHHHHHHhhccCChhHH
Q 007702 160 S-WRLMLGVLSIPALLYFAFAVFFLPESPRWL 190 (592)
Q Consensus 160 ~-Wr~~f~i~~i~~~~~~~l~~~~~pEsP~~l 190 (592)
+ ||++|++.+++.++..++.++++||+|+..
T Consensus 183 g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (451)
T 1pw4_A 183 NDWHAALYMPAFCAILVALFAFAMMRDTPQSC 214 (451)
T ss_dssp CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhhccCCHhhc
Confidence 6 999999999888877777788899998763
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.77 E-value=2.3e-18 Score=180.28 Aligned_cols=180 Identities=19% Similarity=0.213 Sum_probs=163.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHH
Q 007702 8 AIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLV 87 (592)
Q Consensus 8 ~~~~~l~~~~~g~~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~ 87 (592)
++.++++.+..+++...+.+.+|.+.+++|.+..+.+++.+.+.++..++.++.|+++||+|||++++++.++..++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~ 81 (375)
T 2gfp_A 2 LLMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLV 81 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHH
Confidence 34567788888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHHHH
Q 007702 88 MLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGV 167 (592)
Q Consensus 88 ~~~s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i 167 (592)
..++++++.+++.|++.|++.+...+....++.|.+|+++|++.+++.+....+|..+++ .......+..+||++|++
T Consensus 82 ~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~l~~~~~~~~~~~~ 159 (375)
T 2gfp_A 82 AVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAP--LIGGLLDTMWNWRACYLF 159 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHH--HHHHHSSCHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHhccHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999984 444555566799999998
Q ss_pred HHHHHHHHHHHHHhhccCChhH
Q 007702 168 LSIPALLYFAFAVFFLPESPRW 189 (592)
Q Consensus 168 ~~i~~~~~~~l~~~~~pEsP~~ 189 (592)
.+++.++..++..+++||+|+.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~ 181 (375)
T 2gfp_A 160 LLVLCAGVTFSMARWMPETRPV 181 (375)
T ss_dssp HHHHHHHHHCCCCCSSCCCSTT
T ss_pred HHHHHHHHHHHHHHHCcccCCC
Confidence 8888877666567788998765
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.72 E-value=1e-16 Score=173.98 Aligned_cols=171 Identities=15% Similarity=0.142 Sum_probs=140.4
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHH-----cCCCchHHHHHHHHHHHHHHHHHhhHHhhhhh-cCchHHHHHHHHHHH
Q 007702 10 AATIGNFLQGWDNATIA-GAIVYIKKD-----LNLGTTVEGLVVAMSLIGATAITTCSGPISDW-LGRRPMLILSSVLYF 82 (592)
Q Consensus 10 ~~~l~~~~~g~~~~~~~-~~~~~i~~~-----~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr-~GRK~~li~~~~l~~ 82 (592)
.+.+..+...+....+. ...+++.++ +|++..+.+++.+++.++..++++++|+++|| +|||++++++.++.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~ 96 (491)
T 4aps_A 17 TLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIM 96 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 33344444444444443 344566666 99999999999999999999999999999999 899999999999999
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccc--cchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCc
Q 007702 83 VSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEI--RGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPS 160 (592)
Q Consensus 83 i~~~~~~~s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~--Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~ 160 (592)
++.++++++++++.++++|++.|++.|...+...++++|++|+++ |+...++.+....+|..+++.+. ..+.+..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~--~~l~~~~g 174 (491)
T 4aps_A 97 LGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIV--GAAQEAAG 174 (491)
T ss_dssp HHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHSC
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHH--HHHHhhhh
Confidence 999999999999999999999999999999999999999999998 67788888899999999885443 44445578
Q ss_pred hhHHHHHHHHHHHHHHHHHHhh
Q 007702 161 WRLMLGVLSIPALLYFAFAVFF 182 (592)
Q Consensus 161 Wr~~f~i~~i~~~~~~~l~~~~ 182 (592)
||++|++.++..++..++.++.
T Consensus 175 ~~~~f~~~~~~~~~~~~~~~~~ 196 (491)
T 4aps_A 175 YHVAFSLAAIGMFIGLLVYYFG 196 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 9999998877666555444333
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.60 E-value=1.5e-14 Score=158.25 Aligned_cols=166 Identities=17% Similarity=0.149 Sum_probs=137.7
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHcC------CCchHHHHHHHHHHHHHHHHHhhHHhhhhhc-CchHHHHHHHHHHHH
Q 007702 12 TIGNFLQGWDNATIAGA-IVYIKKDLN------LGTTVEGLVVAMSLIGATAITTCSGPISDWL-GRRPMLILSSVLYFV 83 (592)
Q Consensus 12 ~l~~~~~g~~~~~~~~~-~~~i~~~~~------~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~-GRK~~li~~~~l~~i 83 (592)
.+..+...+....+.+. .+++.+++| ++..+.+++.+++.++..++.++.|+++||+ |||++++++.++.++
T Consensus 18 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~ 97 (524)
T 2xut_A 18 IASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCV 97 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 33444444444444444 455778899 9999999999999999999999999999999 999999999999999
Q ss_pred HHHHHHhhc-cHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHH---HHHHHhhHHHHHHHHHHHhHhcCCC
Q 007702 84 SGLVMLWSP-NVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTL---PQFTGSGGMFLAYCMVFGMSLLASP 159 (592)
Q Consensus 84 ~~~~~~~s~-~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~---~~~~~~~G~~l~~~~~~~~~~~~~~ 159 (592)
+.+++++++ +++.++++|++.|++.+...+...++++|.+|+++|++..+. .+.+..+|..+++.+ ...+.+..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~--~~~l~~~~ 175 (524)
T 2xut_A 98 GHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLS--MPLLLKNF 175 (524)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHT--STHHHHTS
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhccc
Confidence 999999999 999999999999999999999999999999999999877666 888888888888443 33344567
Q ss_pred chhHHHHHHHHHHHHHHHHH
Q 007702 160 SWRLMLGVLSIPALLYFAFA 179 (592)
Q Consensus 160 ~Wr~~f~i~~i~~~~~~~l~ 179 (592)
+||++|++.+++.++.+++.
T Consensus 176 g~~~~f~~~~~~~~~~~~~~ 195 (524)
T 2xut_A 176 GAAVAFGIPGVLMFVATVFF 195 (524)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHH
Confidence 89999998887766644443
No 7
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.31 E-value=4e-11 Score=129.55 Aligned_cols=176 Identities=19% Similarity=0.150 Sum_probs=123.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHhh----
Q 007702 16 FLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWS---- 91 (592)
Q Consensus 16 ~~~g~~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~s---- 91 (592)
+.+......+....+.+.+..+.+............+...++.++++++.||+|||+.++.+.+...++.+..+..
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~ 366 (491)
T 4gc0_A 287 FQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQ 366 (491)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcc
Confidence 3333334444556677888888888777777778888899999999999999999999999988888777665542
Q ss_pred -ccHHHHH-HHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHh----HhcCCCchhHHH
Q 007702 92 -PNVYVLC-IARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGM----SLLASPSWRLML 165 (592)
Q Consensus 92 -~~~~~ll-~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~----~~~~~~~Wr~~f 165 (592)
+....++ +.-+..+++. ...++.++|.+|++|++.|+..+++......+|.++++...... ......++..+|
T Consensus 367 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~ 445 (491)
T 4gc0_A 367 APGIVALLSMLFYVAAFAM-SWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSY 445 (491)
T ss_dssp CCHHHHHHHHHHHHHHHHT-TTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHH
T ss_pred cchHHHHHHHHHHHHHHHh-HHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 2222222 2222223333 23467789999999999999999999888888877664332111 111223556678
Q ss_pred HHHHHHHHHHHHHHHhhccCChhHHHhcCcHHH
Q 007702 166 GVLSIPALLYFAFAVFFLPESPRWLVSKGKMLE 198 (592)
Q Consensus 166 ~i~~i~~~~~~~l~~~~~pEsP~~l~~~~~~~e 198 (592)
++.++++++.+++.++++||| |||..|
T Consensus 446 ~i~~~~~~~~~i~~~~~~PET------kg~tLe 472 (491)
T 4gc0_A 446 WIYGCMGVLAALFMWKFVPET------KGKTLE 472 (491)
T ss_dssp HHHHHHHHHHHHHHHHHCCCC------TTCCHH
T ss_pred HHHHHHHHHHHHHHHheecCC------CCCCHH
Confidence 888888888888888999999 777655
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.27 E-value=1.3e-10 Score=123.77 Aligned_cols=169 Identities=17% Similarity=0.067 Sum_probs=134.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-cCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhc--CchHHHHHHHHHHH-HHHH
Q 007702 11 ATIGNFLQGWDNATIAGAIVYIKKD-LNLGTTVEGLVVAMSLIGATAITTCSGPISDWL--GRRPMLILSSVLYF-VSGL 86 (592)
Q Consensus 11 ~~l~~~~~g~~~~~~~~~~~~i~~~-~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~--GRK~~li~~~~l~~-i~~~ 86 (592)
..+..++.......+....|.+.++ +|.+....+++.+...++.+++.++.|++.||+ |||+.++++.++.. ++.+
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (451)
T 1pw4_A 257 IAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATI 336 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence 3444444555555555566665555 899999999999999999999999999999999 99999988887776 6666
Q ss_pred HHHhh--ccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhh-HHHHHHHHHHHhHhcCCCchhH
Q 007702 87 VMLWS--PNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSG-GMFLAYCMVFGMSLLASPSWRL 163 (592)
Q Consensus 87 ~~~~s--~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~-G~~l~~~~~~~~~~~~~~~Wr~ 163 (592)
+..+. .+.+.+.+.-++.|++.+...+....++.|.+|++.||+..++.+....+ |..+++. ....+.+..+|+.
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~--~~g~l~~~~g~~~ 414 (451)
T 1pw4_A 337 VYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASA--IVGYTVDFFGWDG 414 (451)
T ss_dssp HTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHSSCSHH
T ss_pred HHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHH--HHHHHHHhcCcHH
Confidence 66665 37788888889999999988888899999999999999999999999998 9988843 3444455678999
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 007702 164 MLGVLSIPALLYFAFAVF 181 (592)
Q Consensus 164 ~f~i~~i~~~~~~~l~~~ 181 (592)
.|++.+++.++..++.++
T Consensus 415 ~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 415 GFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 998888777765544433
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.17 E-value=2.1e-10 Score=121.96 Aligned_cols=146 Identities=18% Similarity=0.172 Sum_probs=116.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 007702 41 TVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYIS 120 (592)
Q Consensus 41 ~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~ 120 (592)
...+++.++..++.+++.++.|+++||+|||++++++.++.+++.++.++.++.+.+++..++.+++.+...+....+++
T Consensus 259 ~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 338 (417)
T 2cfq_A 259 RVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYIT 338 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45577788888888999999999999999999999998888888777778888888888888888888777777888999
Q ss_pred hhcCccccchhhHH-HHHHHhhHHHHHHHHHHHhHhcCCCchhHHHHHHHHHHHHHHHHHHhhccCChh
Q 007702 121 ETAPSEIRGRLNTL-PQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPALLYFAFAVFFLPESPR 188 (592)
Q Consensus 121 E~~p~~~Rg~~~~~-~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i~~i~~~~~~~l~~~~~pEsP~ 188 (592)
|.+|++.||...++ .+....+|..+++.. ...+.+..++..+|.+.+++.++..++.+++.||.++
T Consensus 339 ~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l--~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 339 SQFEVRFSATIYLVCFCFFKQLAMIFMSVL--AGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp HHSCHHHHHHHHHHHHTTTHHHHHHHHTHH--HHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred HHCCHHHHHHHHHHHHHHHHhHHHHHhhhh--HHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 99999999998887 476777787777433 3334445678888888888877766666667777643
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.08 E-value=2.6e-11 Score=128.92 Aligned_cols=168 Identities=14% Similarity=0.096 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHHHHH-HHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHH---HHHhh
Q 007702 16 FLQGWDNATIAGAIVY-IKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGL---VMLWS 91 (592)
Q Consensus 16 ~~~g~~~~~~~~~~~~-i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~---~~~~s 91 (592)
+........+.+.+|. +++++|++..+.+++.+++.++..++++++|+++||+|||++++++.+++.++.. ...++
T Consensus 17 ~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~ 96 (417)
T 2cfq_A 17 FFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFG 96 (417)
T ss_dssp HHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444455554 6667999999999999999999999999999999999999999998887755322 11222
Q ss_pred ccHH-HHHHHHHHHHhhhhhhhhHHHHHHHhhcCc--cccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHHHHH
Q 007702 92 PNVY-VLCIARLLDGFGVGLAVTLVPLYISETAPS--EIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVL 168 (592)
Q Consensus 92 ~~~~-~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~--~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i~ 168 (592)
+... .++..+++.|++.|...+.....+.++.++ +.|+...+..+....+|..+++.+.... .+ .+||++|++.
T Consensus 97 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l--~~-~~~~~~f~~~ 173 (417)
T 2cfq_A 97 PLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIM--FT-INNQFVFWLG 173 (417)
T ss_dssp HHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHH--HH-HCSHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHH--HH-hchhHHHHHH
Confidence 2211 234456666665555443333333333332 3456666776667777777775443222 22 4799999877
Q ss_pred HHHHHHHHHHHHhhccCC
Q 007702 169 SIPALLYFAFAVFFLPES 186 (592)
Q Consensus 169 ~i~~~~~~~l~~~~~pEs 186 (592)
+++.++..++.++..||+
T Consensus 174 ~~~~~~~~~~~~~~~~~~ 191 (417)
T 2cfq_A 174 SGCALILAVLLFFAKTDA 191 (417)
T ss_dssp TTTTTTHHHHSCSSCCCC
T ss_pred HHHHHHHHHHHHHcCccc
Confidence 766554333333334454
No 11
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.07 E-value=3.6e-09 Score=112.18 Aligned_cols=147 Identities=4% Similarity=-0.127 Sum_probs=114.7
Q ss_pred HHHHHHH-HH-HHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHhhccHHHHHHH
Q 007702 23 ATIAGAI-VY-IKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIA 100 (592)
Q Consensus 23 ~~~~~~~-~~-i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~s~~~~~ll~~ 100 (592)
..+.... ++ +++.+|.+....+++.+.+.++.+++.++.|+++||+|||++++++.++..++.++..+.++.+.++..
T Consensus 275 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (438)
T 3o7q_A 275 TACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIAL 354 (438)
T ss_dssp HHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 3333333 44 455569999999999999999999999999999999999999999999999998888888887665544
Q ss_pred HHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCc-hhHHHHHHHHHHHH
Q 007702 101 RLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPS-WRLMLGVLSIPALL 174 (592)
Q Consensus 101 R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~-Wr~~f~i~~i~~~~ 174 (592)
++.|++.+...+....+..|.+|++ |+...++.. ...+|..+++.+ .....+..+ ++..|.+.++..++
T Consensus 355 -~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~--~g~l~~~~g~~~~~~~~~~~~~~~ 424 (438)
T 3o7q_A 355 -TLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPV--MGFVSDAAGNIPTAELIPALCFAV 424 (438)
T ss_dssp -HHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHH--HHHHHHHHTSSGGGGHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHH--HHHHHHHhcchHHHHHHHHHHHHH
Confidence 8889999999999999999999977 888888766 455777776433 333444445 88888765554443
No 12
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.00 E-value=1.3e-09 Score=117.60 Aligned_cols=158 Identities=10% Similarity=-0.024 Sum_probs=116.8
Q ss_pred HHHHH-HHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHH-----HHHHHHHHHHHHHHhhc-------
Q 007702 26 AGAIV-YIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLI-----LSSVLYFVSGLVMLWSP------- 92 (592)
Q Consensus 26 ~~~~~-~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li-----~~~~l~~i~~~~~~~s~------- 92 (592)
...++ +..+.++.+....+++.+...++..++.++.+++.||+|||+... ++.++.+++.++..+..
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (491)
T 4aps_A 303 SVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSG 382 (491)
T ss_dssp GTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCT
T ss_pred cHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 33344 345556766566777888888999999999999999999987655 66666677666655532
Q ss_pred --cHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHHHHHHH
Q 007702 93 --NVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSI 170 (592)
Q Consensus 93 --~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i~~i 170 (592)
+.+.+++.-++.|++.+...+....++.|.+|++.||...++.+....+|..+++.. ... ....++...|.+.++
T Consensus 383 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~--~~~-~~~~~~~~~~~~~~~ 459 (491)
T 4aps_A 383 KVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQL--VTL-YNAKSEVAYFSYFGL 459 (491)
T ss_dssp TCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHH--GGG-GGGSSTTHHHHHTHH
T ss_pred CccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHH-HhcccHHHHHHHHHH
Confidence 667778888999999999889999999999999999999999999999999888443 222 234467778888887
Q ss_pred HHHHHHHHHHhhccCC
Q 007702 171 PALLYFAFAVFFLPES 186 (592)
Q Consensus 171 ~~~~~~~l~~~~~pEs 186 (592)
+.++..++.+++.|+.
T Consensus 460 ~~~~~~~~~~~~~~~~ 475 (491)
T 4aps_A 460 GSVVLGIVLVFLSKRI 475 (491)
T ss_dssp HHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777666666666655
No 13
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.40 E-value=2.1e-07 Score=101.25 Aligned_cols=143 Identities=10% Similarity=0.053 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhhh----hhcCc----hHHHHHHHHHHHHHHHHHHhh---------ccHHHHHHHHHHH
Q 007702 42 VEGLVVAMSLIGATAITTCSGPIS----DWLGR----RPMLILSSVLYFVSGLVMLWS---------PNVYVLCIARLLD 104 (592)
Q Consensus 42 ~~gli~s~~~lg~~ig~~~~G~l~----Dr~GR----K~~li~~~~l~~i~~~~~~~s---------~~~~~ll~~R~l~ 104 (592)
..+++.+...++..++.++.+.+. +|.|+ ++.+.++.++.+++.++.++. .+.+.+++.-++.
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 415 (524)
T 2xut_A 336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALL 415 (524)
T ss_dssp CHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Confidence 355666666667777777776664 55543 356677777777777766663 3667788888999
Q ss_pred HhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCC--Cch---------hHHHHHHHHHHH
Q 007702 105 GFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLAS--PSW---------RLMLGVLSIPAL 173 (592)
Q Consensus 105 G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~--~~W---------r~~f~i~~i~~~ 173 (592)
|++.+...+....++.|.+|++.||+.+++.+....+|..+++.+. ....+. .+| +..|++.+++.+
T Consensus 416 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (524)
T 2xut_A 416 TFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLAN--VSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAI 493 (524)
T ss_dssp HHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHH--HHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHH--HHhcccccccccccccccccccHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999985443 333332 134 334666666666
Q ss_pred HHHHHHHhhccCC
Q 007702 174 LYFAFAVFFLPES 186 (592)
Q Consensus 174 ~~~~l~~~~~pEs 186 (592)
+..++.+++.++.
T Consensus 494 ~~~~~~~~~~~~~ 506 (524)
T 2xut_A 494 LAAIVFALYARSY 506 (524)
T ss_dssp HHHHHHC------
T ss_pred HHHHHHHHHHHHh
Confidence 6555555555554
No 14
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.25 E-value=1.8e-07 Score=96.98 Aligned_cols=148 Identities=16% Similarity=0.070 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHH-HHHHHH--HHHh
Q 007702 15 NFLQGWDNATIAGAIVY-IKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVL-YFVSGL--VMLW 90 (592)
Q Consensus 15 ~~~~g~~~~~~~~~~~~-i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l-~~i~~~--~~~~ 90 (592)
.+........+....|. +++.+|.+....+++.+...++..++.++.+++.||+|++ +..+..+ ..++.. ....
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~ 285 (375)
T 2gfp_A 208 LIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWIPDW 285 (375)
T ss_dssp HHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhh
Confidence 33344444444444444 4555888888999999999999999999999999999883 3333333 222222 2222
Q ss_pred --hccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHHHH
Q 007702 91 --SPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGV 167 (592)
Q Consensus 91 --s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i 167 (592)
.++.+.+++.-++.|++.+...+....++.|.+| ++||+..++.+....+|..+++.. .....+..+|+..+.+
T Consensus 286 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~--~g~l~~~~~~~~~~~~ 361 (375)
T 2gfp_A 286 FGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASL--SAMLPQTGQGSLGLLM 361 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTT--CTHHHHHHHHHHHHHH
T ss_pred hccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHH--HHHHhcCCcccHHHHH
Confidence 2367777788899999999999999999999999 899999999998888887776322 2222334456666654
No 15
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=22.39 E-value=1.5e+02 Score=20.04 Aligned_cols=31 Identities=10% Similarity=0.241 Sum_probs=19.4
Q ss_pred cCCCCchhHHHHHHHHHHHHhhhHhHHHHHh
Q 007702 556 LGISSESASFLISAFTTFLMLPCIGVAMKLM 586 (592)
Q Consensus 556 ~g~~~~~~~~~~~~~~~~~~~~~~~~a~~lv 586 (592)
+|.+++..++..+++.+++.++......++.
T Consensus 3 ~~~~s~~~aIA~gVVgGv~~v~ii~~~~~~~ 33 (44)
T 2l2t_A 3 LPQHARTPLIAAGVIGGLFILVIVGLTFAVY 33 (44)
T ss_dssp CCSSCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCcceEEEeehHHHHHHHHHHHHHHHH
Confidence 4555677777777777777665555554443
Done!