Query 007703
Match_columns 592
No_of_seqs 227 out of 1359
Neff 4.5
Searched_HMMs 46136
Date Thu Mar 28 14:12:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007703.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007703hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1257 NADP+-dependent malic 100.0 7E-224 2E-228 1763.8 49.5 559 31-591 9-568 (582)
2 PRK13529 malate dehydrogenase; 100.0 1E-211 2E-216 1704.2 52.1 541 47-592 12-561 (563)
3 PLN03129 NADP-dependent malic 100.0 2E-211 5E-216 1706.1 54.0 543 49-592 39-581 (581)
4 PTZ00317 NADP-dependent malic 100.0 3E-209 6E-214 1684.3 52.1 539 46-587 13-559 (559)
5 COG0281 SfcA Malic enzyme [Ene 100.0 1E-118 3E-123 943.3 34.3 427 85-592 1-432 (432)
6 PRK12861 malic enzyme; Reviewe 100.0 1E-110 2E-115 942.8 34.7 370 132-581 34-420 (764)
7 PRK12862 malic enzyme; Reviewe 100.0 1E-109 2E-114 939.2 34.7 369 132-581 38-424 (763)
8 PRK07232 bifunctional malic en 100.0 2E-108 5E-113 924.8 35.2 358 132-568 30-405 (752)
9 cd05312 NAD_bind_1_malic_enz N 100.0 3.6E-99 8E-104 768.5 29.3 277 307-586 1-279 (279)
10 PF03949 Malic_M: Malic enzyme 100.0 5.4E-96 1E-100 737.2 21.1 252 307-561 1-255 (255)
11 cd00762 NAD_bind_malic_enz NAD 100.0 4.2E-93 9.2E-98 715.5 25.5 251 307-560 1-254 (254)
12 PF00390 malic: Malic enzyme, 100.0 2.5E-84 5.3E-89 623.4 9.9 182 116-297 1-182 (182)
13 cd05311 NAD_bind_2_malic_enz N 100.0 2.3E-58 4.9E-63 456.9 21.9 223 307-560 1-226 (226)
14 cd05191 NAD_bind_amino_acid_DH 98.8 4.6E-08 1E-12 83.4 11.5 86 309-447 1-86 (86)
15 PRK05476 S-adenosyl-L-homocyst 97.7 0.0026 5.7E-08 69.9 19.8 159 252-450 105-302 (425)
16 PRK09414 glutamate dehydrogena 97.2 0.018 3.9E-07 63.9 17.8 189 253-462 138-357 (445)
17 PLN02477 glutamate dehydrogena 97.1 0.014 3E-07 64.1 15.9 186 253-462 112-324 (410)
18 TIGR01035 hemA glutamyl-tRNA r 97.1 0.0022 4.8E-08 69.9 9.5 121 308-450 158-280 (417)
19 cd00401 AdoHcyase S-adenosyl-L 97.0 0.0094 2E-07 65.4 13.8 129 299-462 163-302 (413)
20 TIGR00936 ahcY adenosylhomocys 96.9 0.012 2.6E-07 64.5 13.5 127 299-460 156-293 (406)
21 cd05211 NAD_bind_Glu_Leu_Phe_V 96.9 0.011 2.3E-07 59.5 12.1 130 310-462 2-140 (217)
22 cd05213 NAD_bind_Glutamyl_tRNA 96.9 0.0049 1.1E-07 64.5 10.0 138 287-451 139-277 (311)
23 PRK14031 glutamate dehydrogena 96.9 0.041 8.8E-07 61.1 17.2 182 253-450 134-347 (444)
24 PRK00045 hemA glutamyl-tRNA re 96.8 0.0073 1.6E-07 65.9 10.2 120 309-450 161-283 (423)
25 PLN02494 adenosylhomocysteinas 96.7 0.018 3.9E-07 64.3 12.8 130 299-463 215-355 (477)
26 PRK14982 acyl-ACP reductase; P 96.6 0.013 2.9E-07 62.7 10.6 113 310-451 134-250 (340)
27 TIGR02853 spore_dpaA dipicolin 96.6 0.014 3E-07 60.9 10.2 138 308-475 128-265 (287)
28 PTZ00079 NADP-specific glutama 96.5 0.2 4.3E-06 55.9 19.0 188 253-462 143-366 (454)
29 cd01080 NAD_bind_m-THF_DH_Cycl 96.4 0.023 5E-07 55.1 10.0 89 317-450 30-119 (168)
30 PF01488 Shikimate_DH: Shikima 96.3 0.0038 8.3E-08 57.6 4.0 102 327-452 8-114 (135)
31 cd01076 NAD_bind_1_Glu_DH NAD( 96.3 0.024 5.2E-07 57.3 9.6 132 308-462 8-149 (227)
32 PRK14030 glutamate dehydrogena 96.3 0.18 4E-06 56.0 17.1 189 253-462 134-357 (445)
33 PRK08306 dipicolinate synthase 96.0 0.049 1.1E-06 57.0 10.9 127 314-475 135-266 (296)
34 PTZ00075 Adenosylhomocysteinas 95.9 0.1 2.2E-06 58.4 13.3 122 299-449 215-343 (476)
35 PRK14192 bifunctional 5,10-met 95.8 0.063 1.4E-06 56.2 10.2 108 309-461 137-249 (283)
36 PLN00203 glutamyl-tRNA reducta 95.8 0.031 6.7E-07 63.1 8.5 201 309-563 243-455 (519)
37 COG0373 HemA Glutamyl-tRNA red 95.7 0.048 1E-06 60.0 9.6 215 286-565 138-362 (414)
38 cd01075 NAD_bind_Leu_Phe_Val_D 95.6 0.071 1.5E-06 52.7 9.6 123 309-462 4-129 (200)
39 cd01065 NAD_bind_Shikimate_DH 95.6 0.043 9.3E-07 50.4 7.4 108 316-450 4-120 (155)
40 cd05313 NAD_bind_2_Glu_DH NAD( 95.5 0.23 5E-06 51.5 13.2 133 309-462 16-167 (254)
41 PRK08293 3-hydroxybutyryl-CoA 95.5 0.19 4.2E-06 51.7 12.6 191 332-579 4-221 (287)
42 PRK12549 shikimate 5-dehydroge 95.5 0.043 9.2E-07 57.1 7.7 90 316-422 112-203 (284)
43 PRK13940 glutamyl-tRNA reducta 95.4 0.052 1.1E-06 59.6 8.4 213 287-563 142-359 (414)
44 PRK14175 bifunctional 5,10-met 95.3 0.064 1.4E-06 56.5 8.4 85 309-431 136-221 (286)
45 PLN00106 malate dehydrogenase 94.9 0.15 3.3E-06 54.3 10.0 118 316-450 4-138 (323)
46 TIGR01809 Shik-DH-AROM shikima 94.5 0.08 1.7E-06 54.9 6.6 103 300-430 100-209 (282)
47 TIGR00518 alaDH alanine dehydr 94.5 0.11 2.5E-06 56.0 7.9 95 329-448 165-268 (370)
48 PRK00676 hemA glutamyl-tRNA re 94.2 0.24 5.1E-06 53.4 9.4 122 287-451 136-265 (338)
49 PF00208 ELFV_dehydrog: Glutam 94.1 0.12 2.6E-06 52.9 6.8 130 306-450 6-151 (244)
50 PF00670 AdoHcyase_NAD: S-aden 93.8 0.4 8.6E-06 46.8 9.3 119 308-461 3-122 (162)
51 cd05197 GH4_glycoside_hydrolas 93.8 0.13 2.8E-06 56.8 6.7 105 332-450 1-146 (425)
52 PF03807 F420_oxidored: NADP o 93.7 0.1 2.2E-06 44.4 4.6 95 333-449 1-96 (96)
53 cd01078 NAD_bind_H4MPT_DH NADP 93.5 0.24 5.3E-06 47.9 7.3 54 310-375 7-61 (194)
54 PRK08605 D-lactate dehydrogena 93.0 1.4 2.9E-05 47.0 12.7 153 263-448 59-237 (332)
55 PRK06130 3-hydroxybutyryl-CoA 92.6 3.9 8.4E-05 42.4 15.1 121 332-479 5-142 (311)
56 PRK09424 pntA NAD(P) transhydr 92.6 0.84 1.8E-05 51.8 10.8 228 181-457 30-296 (509)
57 PRK08328 hypothetical protein; 92.5 0.074 1.6E-06 53.7 2.2 120 293-451 7-131 (231)
58 PRK05086 malate dehydrogenase; 92.5 0.71 1.5E-05 48.8 9.6 105 332-450 1-121 (312)
59 PRK14191 bifunctional 5,10-met 92.3 0.5 1.1E-05 49.9 8.1 83 311-431 137-220 (285)
60 PRK12749 quinate/shikimate deh 92.2 0.3 6.5E-06 51.1 6.4 49 316-375 109-157 (288)
61 PRK09260 3-hydroxybutyryl-CoA 92.2 0.28 6.1E-06 50.5 6.1 32 332-375 2-33 (288)
62 COG0578 GlpA Glycerol-3-phosph 92.1 0.77 1.7E-05 52.3 9.9 163 330-565 11-179 (532)
63 cd05296 GH4_P_beta_glucosidase 92.1 0.26 5.7E-06 54.3 6.1 125 332-473 1-166 (419)
64 PRK06129 3-hydroxyacyl-CoA deh 92.1 0.45 9.7E-06 49.6 7.5 38 486-523 184-221 (308)
65 PRK12548 shikimate 5-dehydroge 92.1 0.39 8.5E-06 50.0 7.0 58 299-375 102-159 (289)
66 TIGR02356 adenyl_thiF thiazole 92.0 0.27 5.8E-06 48.6 5.5 38 327-375 17-54 (202)
67 PLN02928 oxidoreductase family 91.9 1.3 2.7E-05 47.7 10.7 139 308-471 120-284 (347)
68 PRK07531 bifunctional 3-hydrox 91.8 2.3 5E-05 47.7 13.1 163 332-540 5-184 (495)
69 TIGR02354 thiF_fam2 thiamine b 91.8 0.23 4.9E-06 49.3 4.7 108 327-454 17-126 (200)
70 PF00056 Ldh_1_N: lactate/mala 91.8 0.13 2.8E-06 48.2 2.8 105 332-450 1-121 (141)
71 PRK10792 bifunctional 5,10-met 91.5 0.7 1.5E-05 48.8 8.2 83 311-431 139-222 (285)
72 PRK14027 quinate/shikimate deh 91.4 0.4 8.6E-06 50.2 6.2 49 316-375 112-160 (283)
73 PRK00257 erythronate-4-phospha 91.2 1.5 3.3E-05 47.9 10.7 157 310-508 95-263 (381)
74 cd00650 LDH_MDH_like NAD-depen 91.2 0.43 9.3E-06 48.6 6.1 126 334-474 1-145 (263)
75 cd05291 HicDH_like L-2-hydroxy 90.8 0.84 1.8E-05 47.8 7.9 125 333-475 2-144 (306)
76 cd05212 NAD_bind_m-THF_DH_Cycl 90.8 1.9 4.2E-05 40.8 9.6 82 312-431 9-91 (140)
77 cd01079 NAD_bind_m-THF_DH NAD 90.7 1.6 3.4E-05 44.0 9.3 102 313-431 35-147 (197)
78 PF02056 Glyco_hydro_4: Family 90.7 0.092 2E-06 52.0 0.7 109 333-456 1-151 (183)
79 PTZ00325 malate dehydrogenase; 90.6 1.6 3.4E-05 46.7 9.8 106 329-450 6-128 (321)
80 PRK00258 aroE shikimate 5-dehy 90.4 0.63 1.4E-05 48.0 6.5 88 315-422 106-196 (278)
81 PRK14619 NAD(P)H-dependent gly 90.1 2.2 4.7E-05 44.6 10.3 33 331-375 4-36 (308)
82 PRK14194 bifunctional 5,10-met 90.1 1.2 2.5E-05 47.5 8.3 92 311-447 139-231 (301)
83 PRK08223 hypothetical protein; 90.0 0.6 1.3E-05 49.3 6.1 58 290-376 4-61 (287)
84 PF01210 NAD_Gly3P_dh_N: NAD-d 89.8 0.44 9.4E-06 45.0 4.5 86 333-438 1-94 (157)
85 cd05298 GH4_GlvA_pagL_like Gly 89.8 0.77 1.7E-05 51.0 7.0 130 332-477 1-171 (437)
86 PRK05600 thiamine biosynthesis 89.7 0.75 1.6E-05 49.9 6.7 102 327-445 37-162 (370)
87 COG0169 AroE Shikimate 5-dehyd 89.7 0.73 1.6E-05 48.5 6.3 48 317-375 110-159 (283)
88 PRK15438 erythronate-4-phospha 89.6 2.9 6.2E-05 45.8 11.0 116 309-461 94-217 (378)
89 PRK06035 3-hydroxyacyl-CoA deh 89.5 5.8 0.00013 41.0 12.7 32 332-375 4-35 (291)
90 PRK14189 bifunctional 5,10-met 89.5 1.4 3E-05 46.7 8.1 83 311-431 138-221 (285)
91 PF02826 2-Hacid_dh_C: D-isome 89.4 1.1 2.3E-05 43.3 6.8 115 322-469 27-147 (178)
92 PRK00066 ldh L-lactate dehydro 89.2 0.82 1.8E-05 48.4 6.4 126 331-474 6-148 (315)
93 PF00899 ThiF: ThiF family; I 89.2 0.66 1.4E-05 42.4 5.0 36 330-376 1-36 (135)
94 cd00704 MDH Malate dehydrogena 89.1 1.9 4.1E-05 46.0 9.0 110 333-450 2-129 (323)
95 COG0334 GdhA Glutamate dehydro 89.0 12 0.00026 41.6 15.3 179 252-451 111-317 (411)
96 PRK14178 bifunctional 5,10-met 88.8 1.3 2.7E-05 46.8 7.3 84 310-431 131-215 (279)
97 PTZ00117 malate dehydrogenase; 88.6 1.9 4.1E-05 45.7 8.7 126 330-474 4-148 (319)
98 PRK08762 molybdopterin biosynt 88.6 0.73 1.6E-05 49.7 5.6 38 327-375 131-168 (376)
99 PTZ00082 L-lactate dehydrogena 88.6 1.2 2.7E-05 47.2 7.3 104 331-450 6-131 (321)
100 PRK14176 bifunctional 5,10-met 88.4 1.9 4.2E-05 45.6 8.4 84 310-431 143-227 (287)
101 PF01113 DapB_N: Dihydrodipico 88.1 2.1 4.5E-05 39.1 7.5 34 333-376 2-36 (124)
102 PRK04346 tryptophan synthase s 88.0 9.8 0.00021 42.0 13.9 95 225-352 23-128 (397)
103 PRK15076 alpha-galactosidase; 87.7 1.3 2.8E-05 49.1 7.0 129 332-477 2-174 (431)
104 TIGR00561 pntA NAD(P) transhyd 87.4 2.3 5E-05 48.4 8.8 177 227-435 66-276 (511)
105 PRK07688 thiamine/molybdopteri 87.3 0.75 1.6E-05 49.3 4.7 38 327-375 20-57 (339)
106 cd05297 GH4_alpha_glucosidase_ 87.1 1.4 3E-05 48.6 6.7 127 333-476 2-171 (423)
107 TIGR00872 gnd_rel 6-phosphoglu 87.0 2 4.4E-05 44.7 7.5 100 333-458 2-102 (298)
108 TIGR01915 npdG NADPH-dependent 86.9 2.4 5.3E-05 42.0 7.8 96 333-452 2-106 (219)
109 PRK13243 glyoxylate reductase; 86.7 4.5 9.8E-05 43.2 10.1 141 326-502 145-291 (333)
110 PRK06223 malate dehydrogenase; 86.3 1.7 3.7E-05 45.1 6.5 119 332-476 3-147 (307)
111 COG0111 SerA Phosphoglycerate 86.3 3.8 8.2E-05 43.9 9.3 100 310-434 103-224 (324)
112 PRK08374 homoserine dehydrogen 86.1 4 8.6E-05 43.7 9.4 105 332-444 3-120 (336)
113 PRK12550 shikimate 5-dehydroge 86.1 1.6 3.6E-05 45.4 6.3 48 316-375 108-155 (272)
114 PRK14184 bifunctional 5,10-met 85.8 2.4 5.3E-05 44.8 7.4 87 311-431 137-224 (286)
115 PRK14190 bifunctional 5,10-met 85.7 3 6.6E-05 44.1 8.1 83 311-431 138-221 (284)
116 PRK08644 thiamine biosynthesis 85.3 0.9 2E-05 45.5 3.8 38 327-375 24-61 (212)
117 PRK14851 hypothetical protein; 84.8 3.7 8E-05 48.2 9.0 123 327-466 39-194 (679)
118 COG1486 CelF Alpha-galactosida 84.8 0.71 1.5E-05 51.5 3.0 124 330-469 2-166 (442)
119 PRK06436 glycerate dehydrogena 84.8 8.6 0.00019 40.7 11.0 92 326-450 117-212 (303)
120 PLN02306 hydroxypyruvate reduc 84.7 5 0.00011 44.0 9.5 174 297-502 107-323 (386)
121 PRK14183 bifunctional 5,10-met 84.7 3.7 8.1E-05 43.4 8.1 84 310-431 136-220 (281)
122 PRK07679 pyrroline-5-carboxyla 84.2 24 0.00053 36.2 13.8 108 331-464 3-111 (279)
123 cd00757 ThiF_MoeB_HesA_family 84.2 1.2 2.6E-05 44.7 4.1 104 327-450 17-123 (228)
124 cd01336 MDH_cytoplasmic_cytoso 84.1 6.5 0.00014 41.9 9.8 121 333-464 4-142 (325)
125 PRK14618 NAD(P)H-dependent gly 83.9 1.4 3.1E-05 46.1 4.8 32 332-375 5-36 (328)
126 PRK14179 bifunctional 5,10-met 83.8 3.9 8.6E-05 43.2 7.9 83 311-431 138-221 (284)
127 PRK12475 thiamine/molybdopteri 83.7 1.2 2.6E-05 47.8 4.1 39 327-376 20-58 (338)
128 PF01262 AlaDh_PNT_C: Alanine 83.2 0.36 7.9E-06 46.1 0.0 90 329-435 18-131 (168)
129 TIGR03140 AhpF alkyl hydropero 83.1 3.5 7.5E-05 46.2 7.6 86 264-352 137-233 (515)
130 TIGR02355 moeB molybdopterin s 83.1 1.3 2.9E-05 45.1 4.0 86 327-430 20-108 (240)
131 PRK14177 bifunctional 5,10-met 83.0 5.1 0.00011 42.4 8.4 82 312-431 140-222 (284)
132 cd01337 MDH_glyoxysomal_mitoch 82.9 8 0.00017 41.2 9.8 102 333-450 2-120 (310)
133 PRK14174 bifunctional 5,10-met 82.8 4.1 8.9E-05 43.3 7.6 86 312-431 140-226 (295)
134 TIGR01285 nifN nitrogenase mol 82.6 2.5 5.5E-05 46.7 6.2 83 319-420 299-382 (432)
135 PRK14106 murD UDP-N-acetylmura 82.6 3.3 7.2E-05 45.0 7.1 36 328-375 2-37 (450)
136 PRK09599 6-phosphogluconate de 82.6 7 0.00015 40.7 9.1 92 333-449 2-96 (301)
137 TIGR02992 ectoine_eutC ectoine 82.4 4.1 8.8E-05 43.2 7.4 115 317-459 117-237 (326)
138 PRK00094 gpsA NAD(P)H-dependen 82.1 2.4 5.1E-05 43.7 5.5 102 333-451 3-109 (325)
139 PRK15317 alkyl hydroperoxide r 81.9 2.1 4.6E-05 47.9 5.3 85 279-375 148-243 (517)
140 PRK12921 2-dehydropantoate 2-r 81.8 3.5 7.5E-05 42.2 6.5 100 333-451 2-106 (305)
141 cd01485 E1-1_like Ubiquitin ac 81.8 1.3 2.9E-05 43.7 3.3 39 327-376 15-53 (198)
142 PRK14172 bifunctional 5,10-met 81.5 6.6 0.00014 41.5 8.5 83 311-431 138-221 (278)
143 PRK08410 2-hydroxyacid dehydro 81.4 12 0.00027 39.5 10.6 135 298-469 85-252 (311)
144 PRK14188 bifunctional 5,10-met 81.4 4.8 0.0001 42.8 7.5 81 311-429 138-219 (296)
145 TIGR00507 aroE shikimate 5-deh 81.3 3.4 7.4E-05 42.4 6.2 48 316-375 102-149 (270)
146 PRK07634 pyrroline-5-carboxyla 81.0 2.6 5.6E-05 41.9 5.1 118 330-473 3-121 (245)
147 PRK15469 ghrA bifunctional gly 80.9 5.4 0.00012 42.4 7.7 158 309-501 98-277 (312)
148 PRK07878 molybdopterin biosynt 80.8 1.1 2.5E-05 48.7 2.7 38 327-375 38-75 (392)
149 PRK05690 molybdopterin biosynt 80.7 2.1 4.5E-05 43.8 4.4 38 327-375 28-65 (245)
150 PRK09310 aroDE bifunctional 3- 80.5 3.2 7E-05 46.5 6.2 47 316-374 317-363 (477)
151 PRK02472 murD UDP-N-acetylmura 80.5 4.5 9.8E-05 43.9 7.2 35 329-375 3-37 (447)
152 TIGR02279 PaaC-3OHAcCoADH 3-hy 80.5 15 0.00032 41.8 11.3 33 331-375 5-37 (503)
153 cd01338 MDH_choloroplast_like 80.4 8.8 0.00019 41.0 9.1 110 332-450 3-131 (322)
154 PF02882 THF_DHG_CYH_C: Tetrah 80.4 8 0.00017 37.6 8.1 83 311-431 16-99 (160)
155 PRK14193 bifunctional 5,10-met 80.3 6.8 0.00015 41.5 8.1 85 311-431 138-223 (284)
156 PLN02516 methylenetetrahydrofo 80.2 7.2 0.00016 41.6 8.3 83 311-431 147-230 (299)
157 PRK11880 pyrroline-5-carboxyla 80.2 6.3 0.00014 39.8 7.6 96 332-451 3-98 (267)
158 TIGR01772 MDH_euk_gproteo mala 80.1 11 0.00025 40.1 9.8 115 333-463 1-133 (312)
159 PRK05808 3-hydroxybutyryl-CoA 80.0 32 0.00069 35.3 12.8 32 332-375 4-35 (282)
160 cd01487 E1_ThiF_like E1_ThiF_l 80.0 2.3 4.9E-05 41.2 4.2 32 333-375 1-32 (174)
161 PRK12480 D-lactate dehydrogena 79.9 16 0.00034 39.2 10.8 119 298-448 91-235 (330)
162 PRK14168 bifunctional 5,10-met 79.9 7.9 0.00017 41.3 8.5 89 309-431 139-228 (297)
163 cd01492 Aos1_SUMO Ubiquitin ac 79.6 1.6 3.5E-05 43.2 3.1 76 327-419 17-96 (197)
164 PRK14171 bifunctional 5,10-met 79.6 7.7 0.00017 41.2 8.2 85 309-431 137-222 (288)
165 PRK06522 2-dehydropantoate 2-r 79.5 5.9 0.00013 40.3 7.2 102 333-451 2-104 (304)
166 cd01483 E1_enzyme_family Super 79.5 2.5 5.4E-05 38.8 4.1 32 333-375 1-32 (143)
167 PRK14187 bifunctional 5,10-met 79.4 8.4 0.00018 41.1 8.5 83 311-431 140-223 (294)
168 PRK01710 murD UDP-N-acetylmura 79.2 6.1 0.00013 43.6 7.7 111 329-474 12-125 (458)
169 COG0686 Ald Alanine dehydrogen 79.2 2.4 5.3E-05 45.8 4.4 109 329-459 166-290 (371)
170 PRK14170 bifunctional 5,10-met 78.9 8.6 0.00019 40.8 8.3 83 311-431 137-220 (284)
171 PRK14166 bifunctional 5,10-met 78.8 8.7 0.00019 40.7 8.3 85 309-431 135-220 (282)
172 TIGR01763 MalateDH_bact malate 78.7 6 0.00013 41.7 7.2 124 332-474 2-144 (305)
173 PTZ00345 glycerol-3-phosphate 78.5 7 0.00015 42.6 7.8 23 330-352 10-32 (365)
174 PRK07066 3-hydroxybutyryl-CoA 78.4 5.4 0.00012 42.7 6.8 31 332-374 8-38 (321)
175 TIGR01381 E1_like_apg7 E1-like 78.2 2.1 4.5E-05 50.0 3.9 40 327-377 334-373 (664)
176 KOG0029 Amine oxidase [Seconda 78.2 0.9 2E-05 51.3 0.9 24 330-353 14-37 (501)
177 PRK09880 L-idonate 5-dehydroge 78.1 23 0.00049 37.0 11.2 46 317-374 157-202 (343)
178 cd00755 YgdL_like Family of ac 77.9 2.5 5.4E-05 43.2 3.9 37 328-375 8-44 (231)
179 cd05294 LDH-like_MDH_nadp A la 77.7 11 0.00023 40.0 8.6 100 332-450 1-124 (309)
180 cd01339 LDH-like_MDH L-lactate 77.6 4.9 0.00011 41.9 6.1 117 334-474 1-141 (300)
181 PF07992 Pyr_redox_2: Pyridine 77.5 3.6 7.8E-05 38.7 4.7 32 333-376 1-32 (201)
182 PRK07574 formate dehydrogenase 77.2 15 0.00033 40.4 9.9 142 326-501 187-335 (385)
183 PRK10886 DnaA initiator-associ 77.0 10 0.00022 37.9 7.8 91 329-434 39-130 (196)
184 TIGR01408 Ube1 ubiquitin-activ 76.6 1.2 2.7E-05 54.2 1.6 43 327-375 415-457 (1008)
185 PRK15409 bifunctional glyoxyla 76.1 14 0.00031 39.4 9.2 141 326-502 140-288 (323)
186 TIGR01327 PGDH D-3-phosphoglyc 76.0 19 0.00041 41.0 10.6 195 298-530 84-303 (525)
187 PRK05597 molybdopterin biosynt 75.8 3.2 6.9E-05 44.7 4.2 38 327-375 24-61 (355)
188 PRK07680 late competence prote 75.8 6 0.00013 40.5 6.1 98 333-451 2-100 (273)
189 cd05290 LDH_3 A subgroup of L- 75.4 7.8 0.00017 41.1 6.9 102 333-450 1-122 (307)
190 PRK06476 pyrroline-5-carboxyla 75.4 32 0.0007 34.8 11.1 95 333-450 2-96 (258)
191 PRK14185 bifunctional 5,10-met 75.2 13 0.00028 39.7 8.4 87 311-431 137-224 (293)
192 KOG0069 Glyoxylate/hydroxypyru 75.2 15 0.00033 39.8 9.1 101 309-435 120-245 (336)
193 PRK08291 ectoine utilization p 75.1 11 0.00024 40.1 8.0 115 317-459 120-240 (330)
194 PRK13581 D-3-phosphoglycerate 75.0 37 0.00079 38.7 12.5 195 298-531 86-305 (526)
195 KOG0685 Flavin-containing amin 75.0 1.4 3.1E-05 49.5 1.4 26 327-352 17-42 (498)
196 PRK15116 sulfur acceptor prote 75.0 3.6 7.8E-05 43.1 4.2 41 327-378 26-66 (268)
197 PRK08268 3-hydroxy-acyl-CoA de 74.8 8.3 0.00018 43.6 7.3 102 410-521 112-222 (507)
198 PRK06487 glycerate dehydrogena 74.7 51 0.0011 35.0 12.8 186 298-528 88-308 (317)
199 PLN03139 formate dehydrogenase 74.2 23 0.00049 39.1 10.3 142 326-501 194-342 (386)
200 PRK05442 malate dehydrogenase; 73.8 20 0.00044 38.4 9.6 110 333-450 6-133 (326)
201 PRK00141 murD UDP-N-acetylmura 73.7 14 0.0003 41.1 8.7 36 328-375 12-47 (473)
202 cd05293 LDH_1 A subgroup of L- 73.6 10 0.00022 40.2 7.3 125 332-475 4-147 (312)
203 PLN02527 aspartate carbamoyltr 73.3 1.1E+02 0.0023 32.7 14.8 131 270-422 93-229 (306)
204 PRK06932 glycerate dehydrogena 73.0 29 0.00062 36.9 10.5 137 327-502 143-289 (314)
205 PRK02842 light-independent pro 73.0 16 0.00036 40.2 8.9 88 317-419 276-368 (427)
206 PRK12490 6-phosphogluconate de 72.9 17 0.00038 37.8 8.7 93 333-450 2-97 (299)
207 PRK14180 bifunctional 5,10-met 72.7 15 0.00033 38.9 8.2 85 309-431 136-221 (282)
208 PTZ00142 6-phosphogluconate de 72.6 9.6 0.00021 42.9 7.1 97 333-450 3-104 (470)
209 PRK14173 bifunctional 5,10-met 72.2 16 0.00036 38.8 8.3 83 311-431 135-218 (287)
210 TIGR01758 MDH_euk_cyt malate d 72.0 20 0.00044 38.3 9.1 135 333-478 1-155 (324)
211 PF00070 Pyr_redox: Pyridine n 72.0 7.7 0.00017 32.2 4.8 35 333-379 1-35 (80)
212 PRK08229 2-dehydropantoate 2-r 71.8 8.3 0.00018 40.3 6.1 104 332-453 3-113 (341)
213 PRK14169 bifunctional 5,10-met 71.7 18 0.0004 38.3 8.5 84 310-431 135-219 (282)
214 cd08237 ribitol-5-phosphate_DH 71.5 63 0.0014 33.8 12.5 35 330-374 163-197 (341)
215 PRK07411 hypothetical protein; 71.5 4.1 8.8E-05 44.5 3.8 38 327-375 34-71 (390)
216 PRK14182 bifunctional 5,10-met 71.0 19 0.00042 38.2 8.5 83 311-431 137-220 (282)
217 PRK14181 bifunctional 5,10-met 71.0 21 0.00045 38.0 8.8 88 310-431 132-220 (287)
218 KOG2337 Ubiquitin activating E 70.8 3.6 7.8E-05 47.0 3.2 166 329-507 338-522 (669)
219 COG0345 ProC Pyrroline-5-carbo 70.6 21 0.00046 37.5 8.6 106 332-465 2-108 (266)
220 PRK07231 fabG 3-ketoacyl-(acyl 70.6 9.5 0.00021 37.0 5.8 36 328-375 2-38 (251)
221 PRK06270 homoserine dehydrogen 70.5 32 0.0007 36.8 10.3 105 332-444 3-123 (341)
222 TIGR01759 MalateDH-SF1 malate 70.3 22 0.00049 38.1 9.0 121 332-464 4-143 (323)
223 PLN02819 lysine-ketoglutarate 70.1 15 0.00033 45.3 8.6 115 316-435 179-326 (1042)
224 PF02737 3HCDH_N: 3-hydroxyacy 70.1 6.3 0.00014 38.3 4.4 91 333-438 1-105 (180)
225 PRK11790 D-3-phosphoglycerate 70.0 46 0.00099 36.8 11.5 193 297-531 96-319 (409)
226 PRK14167 bifunctional 5,10-met 69.6 21 0.00046 38.1 8.5 86 312-431 138-224 (297)
227 cd01491 Ube1_repeat1 Ubiquitin 69.5 4.4 9.5E-05 42.8 3.4 38 327-375 15-52 (286)
228 PF13738 Pyr_redox_3: Pyridine 69.5 5.4 0.00012 37.8 3.7 30 335-375 1-30 (203)
229 TIGR02622 CDP_4_6_dhtase CDP-g 69.5 12 0.00026 39.1 6.6 102 329-447 2-127 (349)
230 PRK13938 phosphoheptose isomer 68.4 16 0.00034 36.5 6.8 91 330-435 44-135 (196)
231 cd01484 E1-2_like Ubiquitin ac 68.4 6.5 0.00014 40.3 4.3 32 333-375 1-32 (234)
232 PRK12439 NAD(P)H-dependent gly 68.3 8 0.00017 41.2 5.1 102 331-450 7-114 (341)
233 PRK06153 hypothetical protein; 68.3 4.5 9.8E-05 44.7 3.3 161 256-451 111-279 (393)
234 cd01486 Apg7 Apg7 is an E1-lik 68.3 6.3 0.00014 42.3 4.3 68 333-416 1-73 (307)
235 PLN02616 tetrahydrofolate dehy 68.2 21 0.00045 39.3 8.2 83 311-431 211-294 (364)
236 PF01494 FAD_binding_3: FAD bi 67.3 7.2 0.00016 39.4 4.3 34 332-377 2-35 (356)
237 COG0039 Mdh Malate/lactate deh 67.1 13 0.00028 40.1 6.3 108 332-463 1-126 (313)
238 PLN02520 bifunctional 3-dehydr 67.1 12 0.00025 42.7 6.4 38 326-375 374-411 (529)
239 PRK07502 cyclohexadienyl dehyd 66.9 31 0.00067 35.9 9.0 95 331-448 6-101 (307)
240 cd05292 LDH_2 A subgroup of L- 66.8 17 0.00037 38.3 7.1 126 333-476 2-144 (308)
241 TIGR00873 gnd 6-phosphoglucona 66.3 14 0.00031 41.5 6.8 94 334-448 2-99 (467)
242 PRK14186 bifunctional 5,10-met 66.1 27 0.00059 37.3 8.5 83 311-431 138-221 (297)
243 PRK06141 ornithine cyclodeamin 66.1 47 0.001 35.1 10.3 103 330-458 124-231 (314)
244 PLN02897 tetrahydrofolate dehy 65.7 24 0.00052 38.5 8.1 83 311-431 194-277 (345)
245 PRK09754 phenylpropionate diox 65.6 8.8 0.00019 41.2 4.9 36 330-375 2-37 (396)
246 PRK14620 NAD(P)H-dependent gly 65.5 16 0.00034 38.3 6.6 31 333-375 2-32 (326)
247 cd01488 Uba3_RUB Ubiquitin act 65.4 7.5 0.00016 41.2 4.2 32 333-375 1-32 (291)
248 COG5322 Predicted dehydrogenas 64.0 10 0.00022 40.6 4.7 47 306-352 142-189 (351)
249 PF03447 NAD_binding_3: Homose 63.7 11 0.00024 33.5 4.3 81 338-434 1-81 (117)
250 PLN02688 pyrroline-5-carboxyla 63.5 23 0.00049 35.8 7.1 94 333-450 2-98 (266)
251 KOG2304 3-hydroxyacyl-CoA dehy 63.3 6.5 0.00014 41.1 3.1 32 332-375 12-43 (298)
252 KOG1495 Lactate dehydrogenase 63.2 27 0.00059 37.4 7.6 130 327-480 16-169 (332)
253 PRK01713 ornithine carbamoyltr 63.2 47 0.001 35.9 9.7 137 263-419 92-233 (334)
254 COG0476 ThiF Dinucleotide-util 62.9 9.9 0.00021 38.6 4.4 38 327-375 26-63 (254)
255 TIGR01292 TRX_reduct thioredox 62.7 9 0.0002 38.2 4.0 31 333-375 2-32 (300)
256 PRK11883 protoporphyrinogen ox 62.3 5.1 0.00011 42.9 2.3 22 332-353 1-22 (451)
257 TIGR01214 rmlD dTDP-4-dehydror 62.2 29 0.00063 34.7 7.5 60 333-422 1-61 (287)
258 COG0190 FolD 5,10-methylene-te 61.8 23 0.0005 37.7 6.9 118 276-431 91-219 (283)
259 PRK12570 N-acetylmuramic acid- 61.5 34 0.00073 36.3 8.2 37 411-450 127-165 (296)
260 cd01489 Uba2_SUMO Ubiquitin ac 61.3 11 0.00023 40.4 4.5 32 333-375 1-32 (312)
261 PRK00536 speE spermidine synth 61.3 11 0.00024 39.4 4.4 101 332-476 74-175 (262)
262 PF05834 Lycopene_cycl: Lycope 61.2 10 0.00022 40.7 4.3 35 334-378 2-36 (374)
263 PRK06719 precorrin-2 dehydroge 61.1 12 0.00026 35.9 4.3 36 328-375 10-45 (157)
264 PRK06718 precorrin-2 dehydroge 60.6 12 0.00026 37.3 4.4 35 328-374 7-41 (202)
265 TIGR03366 HpnZ_proposed putati 60.0 26 0.00057 35.5 6.9 47 316-374 107-153 (280)
266 PLN02602 lactate dehydrogenase 59.8 28 0.00061 37.8 7.3 123 332-474 38-180 (350)
267 PRK12409 D-amino acid dehydrog 59.4 12 0.00025 40.1 4.4 33 332-376 2-34 (410)
268 PF01408 GFO_IDH_MocA: Oxidore 59.1 7 0.00015 34.2 2.2 83 333-435 2-84 (120)
269 TIGR01470 cysG_Nterm siroheme 58.8 13 0.00028 37.1 4.3 36 328-375 6-41 (205)
270 PRK12429 3-hydroxybutyrate deh 58.7 35 0.00075 33.3 7.2 35 329-375 2-37 (258)
271 PF02423 OCD_Mu_crystall: Orni 58.3 18 0.00038 38.4 5.4 102 331-458 128-236 (313)
272 TIGR01283 nifE nitrogenase mol 58.1 25 0.00053 39.1 6.7 85 319-418 314-402 (456)
273 COG0240 GpsA Glycerol-3-phosph 57.7 20 0.00043 38.9 5.7 100 332-447 2-105 (329)
274 PRK06249 2-dehydropantoate 2-r 57.6 29 0.00063 36.3 6.9 103 329-451 3-110 (313)
275 TIGR02028 ChlP geranylgeranyl 57.5 12 0.00026 40.5 4.1 31 333-375 2-32 (398)
276 PRK07877 hypothetical protein; 57.5 25 0.00055 41.8 7.0 101 327-447 103-229 (722)
277 PRK07334 threonine dehydratase 57.5 1.5E+02 0.0032 32.5 12.5 36 331-376 173-208 (403)
278 PRK11199 tyrA bifunctional cho 57.4 45 0.00098 36.2 8.5 33 331-375 98-131 (374)
279 TIGR03169 Nterm_to_SelD pyridi 57.3 6.7 0.00015 41.2 2.1 36 333-377 1-36 (364)
280 PRK06928 pyrroline-5-carboxyla 57.0 41 0.0009 34.7 7.8 98 332-450 2-101 (277)
281 PF06690 DUF1188: Protein of u 56.8 20 0.00043 37.5 5.3 144 325-524 38-186 (252)
282 TIGR02023 BchP-ChlP geranylger 56.5 13 0.00028 39.7 4.1 31 333-375 2-32 (388)
283 PRK12771 putative glutamate sy 56.4 20 0.00044 40.6 5.9 36 328-375 134-169 (564)
284 TIGR03376 glycerol3P_DH glycer 56.3 21 0.00046 38.5 5.7 20 333-352 1-20 (342)
285 cd05007 SIS_Etherase N-acetylm 56.3 20 0.00044 37.0 5.4 38 410-450 117-156 (257)
286 COG1179 Dinucleotide-utilizing 56.0 10 0.00022 39.8 3.1 42 328-380 27-68 (263)
287 PRK01438 murD UDP-N-acetylmura 55.8 17 0.00037 40.0 5.1 29 324-352 9-37 (480)
288 KOG0743 AAA+-type ATPase [Post 55.7 19 0.0004 40.7 5.2 104 199-339 241-345 (457)
289 PRK15181 Vi polysaccharide bio 55.7 47 0.001 34.9 8.1 105 325-447 9-141 (348)
290 PRK07340 ornithine cyclodeamin 55.6 58 0.0013 34.4 8.7 103 329-458 123-229 (304)
291 TIGR01771 L-LDH-NAD L-lactate 55.5 25 0.00054 37.1 6.0 123 336-474 1-139 (299)
292 PRK07530 3-hydroxybutyryl-CoA 55.4 15 0.00033 37.8 4.3 32 332-375 5-36 (292)
293 PRK07819 3-hydroxybutyryl-CoA 55.4 15 0.00032 38.3 4.2 22 332-353 6-27 (286)
294 PRK13512 coenzyme A disulfide 55.3 12 0.00025 41.0 3.6 33 333-375 3-35 (438)
295 PF13454 NAD_binding_9: FAD-NA 55.2 12 0.00026 35.2 3.2 36 335-377 1-36 (156)
296 TIGR00465 ilvC ketol-acid redu 55.1 43 0.00094 35.8 7.7 24 329-352 1-24 (314)
297 PF01266 DAO: FAD dependent ox 55.1 17 0.00036 36.8 4.5 32 333-376 1-32 (358)
298 PRK05866 short chain dehydroge 54.5 39 0.00086 34.7 7.1 39 326-375 35-73 (293)
299 PRK06184 hypothetical protein; 54.4 16 0.00034 40.6 4.5 35 330-376 2-36 (502)
300 PRK07233 hypothetical protein; 53.8 14 0.0003 39.2 3.8 31 333-375 1-31 (434)
301 PRK06847 hypothetical protein; 53.4 17 0.00038 37.9 4.4 22 331-352 4-25 (375)
302 TIGR01316 gltA glutamate synth 53.2 19 0.00041 39.7 4.8 36 328-375 130-165 (449)
303 COG2072 TrkA Predicted flavopr 53.1 18 0.00038 40.2 4.6 36 330-376 7-42 (443)
304 PRK09564 coenzyme A disulfide 52.9 20 0.00043 38.9 4.8 36 332-377 1-36 (444)
305 PRK07236 hypothetical protein; 52.8 19 0.00042 38.2 4.7 24 329-352 4-27 (386)
306 COG0771 MurD UDP-N-acetylmuram 52.8 78 0.0017 35.8 9.5 118 328-487 4-124 (448)
307 COG1052 LdhA Lactate dehydroge 52.6 89 0.0019 33.7 9.6 93 324-447 139-236 (324)
308 PF03435 Saccharop_dh: Sacchar 52.2 6.8 0.00015 41.9 1.2 81 334-435 1-89 (386)
309 cd00529 RuvC_resolvase Hollida 52.1 98 0.0021 29.5 8.9 112 192-344 1-118 (154)
310 PRK04663 murD UDP-N-acetylmura 52.0 54 0.0012 36.0 8.1 117 329-486 4-121 (438)
311 PRK03803 murD UDP-N-acetylmura 52.0 48 0.001 36.3 7.7 110 330-474 5-116 (448)
312 cd01968 Nitrogenase_NifE_I Nit 51.8 21 0.00044 39.0 4.8 86 319-420 275-365 (410)
313 PRK08163 salicylate hydroxylas 51.7 18 0.0004 38.2 4.3 22 331-352 4-25 (396)
314 PRK06407 ornithine cyclodeamin 51.5 41 0.00089 35.6 6.8 104 330-459 116-225 (301)
315 PRK09987 dTDP-4-dehydrorhamnos 51.3 57 0.0012 33.6 7.7 63 333-422 2-65 (299)
316 PLN02268 probable polyamine ox 51.3 5.7 0.00012 42.8 0.5 31 333-368 2-34 (435)
317 PRK12779 putative bifunctional 51.3 19 0.00042 43.9 4.9 40 329-380 304-347 (944)
318 PRK12769 putative oxidoreducta 51.2 18 0.0004 41.9 4.5 35 329-375 325-359 (654)
319 PF13580 SIS_2: SIS domain; PD 51.0 20 0.00044 33.2 4.0 31 403-435 95-125 (138)
320 PRK12828 short chain dehydroge 51.0 26 0.00056 33.6 4.8 36 328-375 4-40 (239)
321 PRK05441 murQ N-acetylmuramic 50.8 22 0.00048 37.6 4.7 38 411-450 131-169 (299)
322 TIGR00274 N-acetylmuramic acid 50.7 27 0.00059 36.9 5.3 38 411-450 126-164 (291)
323 PF03446 NAD_binding_2: NAD bi 50.6 23 0.00049 33.6 4.3 102 332-462 2-107 (163)
324 PRK12810 gltD glutamate syntha 50.5 21 0.00045 39.6 4.7 34 330-375 142-175 (471)
325 PRK06392 homoserine dehydrogen 50.3 63 0.0014 34.8 8.0 82 333-420 2-90 (326)
326 PRK09490 metH B12-dependent me 50.3 1.3E+02 0.0029 38.1 11.8 120 263-425 441-572 (1229)
327 TIGR01181 dTDP_gluc_dehyt dTDP 50.3 70 0.0015 32.0 8.0 78 333-422 1-84 (317)
328 PLN02240 UDP-glucose 4-epimera 50.3 32 0.0007 35.5 5.8 107 328-447 2-132 (352)
329 PRK08618 ornithine cyclodeamin 50.2 67 0.0015 34.1 8.2 104 330-461 126-235 (325)
330 PRK09126 hypothetical protein; 50.1 19 0.00042 37.9 4.2 22 331-352 3-24 (392)
331 PRK06138 short chain dehydroge 49.6 54 0.0012 31.9 6.9 37 328-375 2-38 (252)
332 COG0644 FixC Dehydrogenases (f 49.6 21 0.00045 38.5 4.4 35 332-378 4-38 (396)
333 PRK06475 salicylate hydroxylas 49.6 18 0.0004 38.6 4.0 21 332-352 3-23 (400)
334 PRK04965 NADH:flavorubredoxin 49.5 16 0.00035 38.8 3.5 35 332-376 3-37 (377)
335 PRK14476 nitrogenase molybdenu 49.4 51 0.0011 36.9 7.5 82 263-352 246-332 (455)
336 cd00300 LDH_like L-lactate deh 49.3 48 0.001 34.8 6.9 122 334-473 1-140 (300)
337 cd05006 SIS_GmhA Phosphoheptos 49.2 97 0.0021 29.6 8.4 24 411-436 101-124 (177)
338 PF13450 NAD_binding_8: NAD(P) 49.2 24 0.00053 29.0 3.8 30 336-377 1-30 (68)
339 PRK12829 short chain dehydroge 49.1 54 0.0012 32.1 6.9 37 328-375 8-44 (264)
340 TIGR03026 NDP-sugDHase nucleot 49.0 56 0.0012 35.7 7.6 31 333-375 2-32 (411)
341 TIGR02371 ala_DH_arch alanine 48.9 1.1E+02 0.0023 32.7 9.5 104 330-459 127-235 (325)
342 PRK07364 2-octaprenyl-6-methox 48.8 18 0.0004 38.4 3.8 22 331-352 18-39 (415)
343 KOG2018 Predicted dinucleotide 48.6 20 0.00044 39.0 4.0 40 327-377 70-109 (430)
344 PLN02172 flavin-containing mon 48.5 23 0.00049 39.6 4.6 25 328-352 7-31 (461)
345 TIGR01790 carotene-cycl lycope 48.5 20 0.00043 37.9 3.9 31 334-376 2-32 (388)
346 TIGR01505 tartro_sem_red 2-hyd 48.4 55 0.0012 33.7 7.1 31 333-375 1-31 (291)
347 TIGR01082 murC UDP-N-acetylmur 48.0 28 0.0006 38.3 5.1 105 333-474 1-107 (448)
348 PRK13937 phosphoheptose isomer 47.8 69 0.0015 31.3 7.3 23 411-435 106-128 (188)
349 COG0499 SAM1 S-adenosylhomocys 47.8 74 0.0016 35.4 8.1 103 304-435 185-288 (420)
350 PLN00112 malate dehydrogenase 47.8 67 0.0014 36.3 8.0 111 332-450 101-229 (444)
351 cd01493 APPBP1_RUB Ubiquitin a 47.7 21 0.00046 39.8 4.1 38 327-375 16-53 (425)
352 TIGR00031 UDP-GALP_mutase UDP- 47.5 22 0.00049 38.9 4.3 31 333-375 3-33 (377)
353 PTZ00245 ubiquitin activating 47.4 19 0.0004 38.3 3.4 72 327-416 22-97 (287)
354 TIGR02082 metH 5-methyltetrahy 47.3 2.1E+02 0.0046 36.2 12.9 91 345-453 486-590 (1178)
355 PRK07045 putative monooxygenas 47.0 24 0.00052 37.4 4.3 21 332-352 6-26 (388)
356 cd08281 liver_ADH_like1 Zinc-d 47.0 67 0.0015 34.0 7.6 35 329-374 190-224 (371)
357 PRK05993 short chain dehydroge 46.9 41 0.00088 33.9 5.7 33 331-375 4-37 (277)
358 cd01976 Nitrogenase_MoFe_alpha 46.9 67 0.0015 35.5 7.8 87 318-420 287-378 (421)
359 TIGR00441 gmhA phosphoheptose 46.8 1.2E+02 0.0025 28.7 8.5 26 329-355 9-34 (154)
360 PLN02695 GDP-D-mannose-3',5'-e 46.7 60 0.0013 34.7 7.3 97 330-447 20-137 (370)
361 PRK06416 dihydrolipoamide dehy 46.6 23 0.00049 38.8 4.2 33 332-376 5-37 (462)
362 PRK13394 3-hydroxybutyrate deh 46.6 50 0.0011 32.3 6.2 36 328-375 4-40 (262)
363 PRK04176 ribulose-1,5-biphosph 46.6 23 0.0005 36.4 4.0 34 331-376 25-58 (257)
364 PRK06753 hypothetical protein; 46.6 24 0.00052 36.9 4.2 20 333-352 2-21 (373)
365 PF13407 Peripla_BP_4: Peripla 46.5 76 0.0016 30.9 7.4 144 153-327 52-206 (257)
366 TIGR01286 nifK nitrogenase mol 46.4 35 0.00076 39.0 5.7 34 319-352 351-384 (515)
367 PRK12266 glpD glycerol-3-phosp 46.3 23 0.00049 39.9 4.2 33 332-376 7-39 (508)
368 PLN00093 geranylgeranyl diphos 46.3 23 0.0005 39.3 4.2 21 332-352 40-60 (450)
369 PLN02545 3-hydroxybutyryl-CoA 46.3 26 0.00057 36.1 4.4 32 332-375 5-36 (295)
370 TIGR02032 GG-red-SF geranylger 46.0 25 0.00053 34.9 4.0 33 333-377 2-34 (295)
371 PTZ00318 NADH dehydrogenase-li 45.9 16 0.00036 39.7 2.9 36 328-375 7-42 (424)
372 PRK00414 gmhA phosphoheptose i 45.9 95 0.0021 30.6 8.0 92 329-435 42-133 (192)
373 PRK06171 sorbitol-6-phosphate 45.9 84 0.0018 31.1 7.7 76 328-421 6-87 (266)
374 PRK07424 bifunctional sterol d 45.7 33 0.00071 38.0 5.2 56 294-375 156-211 (406)
375 PRK09186 flagellin modificatio 45.5 47 0.001 32.4 5.8 35 329-375 2-37 (256)
376 PRK06841 short chain dehydroge 45.5 38 0.00083 33.1 5.2 36 328-375 12-48 (255)
377 PRK07251 pyridine nucleotide-d 45.3 26 0.00055 38.2 4.3 33 332-376 4-36 (438)
378 PLN02676 polyamine oxidase 45.1 55 0.0012 36.8 7.0 23 330-352 25-47 (487)
379 PRK11749 dihydropyrimidine deh 45.1 27 0.00058 38.4 4.5 35 329-375 138-172 (457)
380 PRK11259 solA N-methyltryptoph 45.0 26 0.00057 36.5 4.2 34 331-376 3-36 (376)
381 cd01979 Pchlide_reductase_N Pc 44.8 69 0.0015 34.9 7.5 34 319-352 264-297 (396)
382 PRK11154 fadJ multifunctional 44.7 2.7E+02 0.0058 33.1 12.7 104 408-521 413-524 (708)
383 PRK11730 fadB multifunctional 44.6 24 0.00052 41.7 4.2 105 407-521 415-527 (715)
384 COG0654 UbiH 2-polyprenyl-6-me 44.5 27 0.00059 37.4 4.3 33 331-375 2-34 (387)
385 PRK07608 ubiquinone biosynthes 44.5 24 0.00053 37.1 3.9 32 332-375 6-37 (388)
386 PF04320 DUF469: Protein with 44.5 20 0.00043 32.8 2.7 32 253-284 27-61 (101)
387 PRK03515 ornithine carbamoyltr 44.2 1.6E+02 0.0034 32.1 9.9 138 263-420 91-234 (336)
388 PF01946 Thi4: Thi4 family; PD 44.1 34 0.00073 35.5 4.6 37 330-378 16-52 (230)
389 PLN02463 lycopene beta cyclase 44.1 25 0.00055 39.2 4.1 32 332-375 29-60 (447)
390 PRK12770 putative glutamate sy 44.1 34 0.00075 36.1 4.9 35 329-375 16-50 (352)
391 PRK07067 sorbitol dehydrogenas 44.1 23 0.00051 34.8 3.4 79 328-422 3-91 (257)
392 PRK09853 putative selenate red 44.0 26 0.00057 43.2 4.5 35 329-375 537-571 (1019)
393 PRK05732 2-octaprenyl-6-methox 44.0 30 0.00065 36.4 4.4 36 331-375 3-38 (395)
394 PRK12416 protoporphyrinogen ox 43.9 15 0.00032 40.1 2.2 47 332-378 2-55 (463)
395 TIGR01377 soxA_mon sarcosine o 43.7 28 0.00061 36.4 4.2 33 333-377 2-34 (380)
396 PRK12831 putative oxidoreducta 43.7 29 0.00063 38.6 4.5 35 329-375 138-172 (464)
397 PRK12778 putative bifunctional 43.7 32 0.00069 40.6 5.0 36 328-375 428-463 (752)
398 TIGR03693 ocin_ThiF_like putat 43.6 1.1E+02 0.0024 36.1 9.1 64 291-377 101-164 (637)
399 PF13241 NAD_binding_7: Putati 43.3 19 0.00042 31.7 2.5 37 328-376 4-40 (103)
400 PRK10157 putative oxidoreducta 43.2 26 0.00057 38.3 4.0 21 332-352 6-26 (428)
401 COG1063 Tdh Threonine dehydrog 43.0 43 0.00094 35.8 5.5 97 305-420 143-247 (350)
402 COG1086 Predicted nucleoside-d 43.0 40 0.00086 39.2 5.4 75 328-420 247-334 (588)
403 COG0562 Glf UDP-galactopyranos 42.9 27 0.00059 38.2 3.9 34 333-378 3-36 (374)
404 TIGR02053 MerA mercuric reduct 42.9 28 0.00061 38.1 4.2 30 334-375 3-32 (463)
405 cd01974 Nitrogenase_MoFe_beta 42.8 25 0.00055 38.8 3.8 84 320-420 292-386 (435)
406 PRK12814 putative NADPH-depend 42.8 31 0.00068 40.1 4.7 34 330-375 192-225 (652)
407 TIGR01789 lycopene_cycl lycope 42.7 35 0.00076 36.7 4.8 35 334-378 2-36 (370)
408 PRK10892 D-arabinose 5-phospha 42.6 1.3E+02 0.0028 31.5 8.9 83 332-450 48-132 (326)
409 TIGR01984 UbiH 2-polyprenyl-6- 42.5 25 0.00053 36.9 3.5 20 334-353 2-21 (382)
410 cd01490 Ube1_repeat2 Ubiquitin 42.5 28 0.00062 39.0 4.1 37 333-375 1-37 (435)
411 TIGR00292 thiazole biosynthesi 42.3 29 0.00064 35.7 4.0 37 330-378 20-56 (254)
412 TIGR01373 soxB sarcosine oxida 42.3 37 0.00079 36.3 4.8 38 330-377 29-66 (407)
413 COG3288 PntA NAD/NADP transhyd 42.2 34 0.00074 37.2 4.4 50 402-457 237-292 (356)
414 PRK11559 garR tartronate semia 42.1 98 0.0021 31.8 7.8 32 332-375 3-34 (296)
415 PLN02172 flavin-containing mon 42.1 31 0.00066 38.6 4.3 36 329-376 202-237 (461)
416 PRK07890 short chain dehydroge 42.0 62 0.0013 31.6 6.1 36 329-375 3-38 (258)
417 TIGR03736 PRTRC_ThiF PRTRC sys 42.0 37 0.00079 35.3 4.6 42 330-376 10-55 (244)
418 COG1252 Ndh NADH dehydrogenase 42.0 25 0.00055 39.1 3.6 35 331-375 3-37 (405)
419 TIGR01179 galE UDP-glucose-4-e 42.0 99 0.0022 31.0 7.6 97 333-445 1-119 (328)
420 PRK00048 dihydrodipicolinate r 42.0 1.5E+02 0.0033 30.4 9.1 88 332-445 2-90 (257)
421 PRK08773 2-octaprenyl-3-methyl 41.9 25 0.00055 37.3 3.5 34 331-376 6-39 (392)
422 PF02558 ApbA: Ketopantoate re 41.8 36 0.00079 31.1 4.1 31 334-376 1-31 (151)
423 PRK13369 glycerol-3-phosphate 41.8 28 0.00061 38.9 4.0 33 332-376 7-39 (502)
424 PRK07588 hypothetical protein; 41.6 32 0.00069 36.5 4.2 21 332-352 1-21 (391)
425 PRK11101 glpA sn-glycerol-3-ph 41.5 31 0.00067 39.2 4.3 33 331-375 6-38 (546)
426 PRK08244 hypothetical protein; 41.4 30 0.00066 38.2 4.2 21 332-352 3-23 (493)
427 PRK15408 autoinducer 2-binding 41.3 82 0.0018 33.4 7.2 156 154-342 78-244 (336)
428 PRK01747 mnmC bifunctional tRN 41.2 32 0.00069 39.9 4.5 33 332-376 261-293 (662)
429 PRK08010 pyridine nucleotide-d 41.2 29 0.00064 37.7 4.0 32 332-375 4-35 (441)
430 PRK08294 phenol 2-monooxygenas 41.2 27 0.00059 40.6 3.9 35 330-375 31-65 (634)
431 PRK06823 ornithine cyclodeamin 41.0 1.8E+02 0.0039 31.1 9.7 105 330-460 127-236 (315)
432 PF13738 Pyr_redox_3: Pyridine 41.0 30 0.00066 32.7 3.6 25 328-352 164-188 (203)
433 COG0673 MviM Predicted dehydro 40.9 71 0.0015 33.0 6.5 43 399-444 55-102 (342)
434 PRK05976 dihydrolipoamide dehy 40.9 31 0.00068 38.0 4.2 33 331-375 4-36 (472)
435 KOG3851 Sulfide:quinone oxidor 40.8 20 0.00044 39.3 2.6 135 330-475 38-230 (446)
436 PRK00711 D-amino acid dehydrog 40.8 33 0.00071 36.5 4.2 31 333-375 2-32 (416)
437 TIGR01988 Ubi-OHases Ubiquinon 40.8 29 0.00063 36.1 3.7 31 334-376 2-32 (385)
438 TIGR01350 lipoamide_DH dihydro 40.7 32 0.0007 37.5 4.2 30 333-374 3-32 (461)
439 COG4017 Uncharacterized protei 40.5 67 0.0015 33.1 6.0 150 327-527 41-190 (254)
440 PRK04690 murD UDP-N-acetylmura 40.5 34 0.00073 38.1 4.4 24 329-352 6-29 (468)
441 PRK06912 acoL dihydrolipoamide 40.5 34 0.00073 37.7 4.3 31 333-375 2-32 (458)
442 PRK06182 short chain dehydroge 40.4 64 0.0014 32.2 6.0 74 330-422 2-85 (273)
443 PRK06185 hypothetical protein; 40.4 33 0.00071 36.5 4.1 34 331-376 6-39 (407)
444 PRK08243 4-hydroxybenzoate 3-m 40.3 36 0.00077 36.4 4.4 22 331-352 2-23 (392)
445 PRK05749 3-deoxy-D-manno-octul 40.3 84 0.0018 33.8 7.2 37 402-444 312-349 (425)
446 TIGR00658 orni_carb_tr ornithi 40.3 2.4E+02 0.0051 30.1 10.4 114 288-419 106-224 (304)
447 PRK09466 metL bifunctional asp 40.3 77 0.0017 38.4 7.5 106 331-444 458-570 (810)
448 PRK14694 putative mercuric red 40.2 36 0.00079 37.5 4.5 34 330-375 5-38 (468)
449 PRK10262 thioredoxin reductase 40.2 28 0.00061 36.0 3.5 24 329-352 4-27 (321)
450 PRK11728 hydroxyglutarate oxid 40.2 35 0.00076 36.4 4.3 34 332-375 3-36 (393)
451 cd05188 MDR Medium chain reduc 40.1 72 0.0016 30.8 6.1 46 318-375 122-167 (271)
452 PRK08219 short chain dehydroge 40.1 1.1E+02 0.0023 29.2 7.3 71 332-422 4-82 (227)
453 PRK08849 2-octaprenyl-3-methyl 40.1 36 0.00079 36.2 4.4 32 332-375 4-35 (384)
454 PRK12391 tryptophan synthase s 40.0 2.3E+02 0.005 31.8 10.7 48 322-376 247-294 (427)
455 TIGR00670 asp_carb_tr aspartat 39.9 5E+02 0.011 27.8 15.6 136 262-421 85-226 (301)
456 PF12831 FAD_oxidored: FAD dep 39.9 35 0.00077 37.4 4.4 33 334-378 2-34 (428)
457 PRK05714 2-octaprenyl-3-methyl 39.9 27 0.00059 37.2 3.4 31 333-375 4-34 (405)
458 PLN02568 polyamine oxidase 39.8 18 0.0004 41.2 2.2 24 330-353 4-27 (539)
459 PRK14852 hypothetical protein; 39.8 28 0.00061 42.8 3.8 38 327-375 328-365 (989)
460 TIGR01317 GOGAT_sm_gam glutama 39.8 36 0.00079 38.1 4.5 34 330-375 142-175 (485)
461 PRK12491 pyrroline-5-carboxyla 39.7 59 0.0013 33.8 5.7 107 332-465 3-110 (272)
462 PRK09897 hypothetical protein; 39.7 35 0.00075 39.2 4.4 33 333-375 3-35 (534)
463 PRK08265 short chain dehydroge 39.7 33 0.00071 34.2 3.8 37 328-375 3-39 (261)
464 PRK06200 2,3-dihydroxy-2,3-dih 39.7 30 0.00066 34.2 3.5 37 328-375 3-39 (263)
465 PRK08013 oxidoreductase; Provi 39.6 34 0.00074 36.7 4.1 33 331-375 3-35 (400)
466 COG1087 GalE UDP-glucose 4-epi 39.6 66 0.0014 35.0 6.1 99 333-447 2-118 (329)
467 TIGR03143 AhpF_homolog putativ 39.5 33 0.00072 39.0 4.2 32 333-376 6-37 (555)
468 PLN02366 spermidine synthase 39.4 60 0.0013 34.7 5.8 93 331-435 92-194 (308)
469 KOG1201 Hydroxysteroid 17-beta 39.4 54 0.0012 35.3 5.4 41 314-357 21-61 (300)
470 TIGR03315 Se_ygfK putative sel 39.3 33 0.00071 42.4 4.3 34 330-375 536-569 (1012)
471 TIGR01282 nifD nitrogenase mol 39.3 44 0.00095 37.6 5.0 136 264-420 268-413 (466)
472 PRK06046 alanine dehydrogenase 39.2 1.7E+02 0.0038 31.1 9.3 103 330-459 128-236 (326)
473 PRK07538 hypothetical protein; 39.2 35 0.00076 36.7 4.1 20 333-352 2-21 (413)
474 TIGR03364 HpnW_proposed FAD de 39.1 34 0.00074 35.8 4.0 31 333-375 2-32 (365)
475 COG3349 Uncharacterized conser 39.1 23 0.0005 40.3 2.8 44 332-380 1-51 (485)
476 PLN02653 GDP-mannose 4,6-dehyd 39.1 1.1E+02 0.0024 31.7 7.7 82 328-421 3-93 (340)
477 KOG2012 Ubiquitin activating e 39.0 20 0.00043 43.3 2.3 116 327-470 426-552 (1013)
478 cd05017 SIS_PGI_PMI_1 The memb 38.8 1.4E+02 0.0031 26.6 7.4 35 411-448 43-78 (119)
479 PF00743 FMO-like: Flavin-bind 38.7 27 0.00058 39.9 3.3 26 327-352 179-204 (531)
480 PLN02350 phosphogluconate dehy 38.7 83 0.0018 35.9 7.1 97 333-450 8-110 (493)
481 PRK14806 bifunctional cyclohex 38.6 67 0.0015 37.6 6.6 94 332-447 4-97 (735)
482 PRK08020 ubiF 2-octaprenyl-3-m 38.6 33 0.00071 36.3 3.8 33 331-375 5-37 (391)
483 COG1893 ApbA Ketopantoate redu 38.5 60 0.0013 34.5 5.6 101 332-454 1-108 (307)
484 PRK12809 putative oxidoreducta 38.4 42 0.00091 38.9 4.9 35 330-376 309-343 (639)
485 CHL00076 chlB photochlorophyll 38.3 44 0.00095 38.1 4.9 79 327-419 301-382 (513)
486 PRK06834 hypothetical protein; 38.3 40 0.00087 37.8 4.5 35 330-376 2-36 (488)
487 PRK12562 ornithine carbamoyltr 38.2 2.5E+02 0.0055 30.5 10.4 138 262-419 90-233 (334)
488 PRK12826 3-ketoacyl-(acyl-carr 38.2 88 0.0019 30.2 6.4 36 328-375 3-39 (251)
489 TIGR02931 anfK_nitrog Fe-only 38.2 53 0.0012 36.8 5.5 25 328-352 309-333 (461)
490 COG0529 CysC Adenylylsulfate k 38.0 28 0.00061 35.2 2.9 15 60-74 65-79 (197)
491 COG0565 LasT rRNA methylase [T 37.9 78 0.0017 33.1 6.2 74 330-423 3-84 (242)
492 PRK06815 hypothetical protein; 37.9 2.4E+02 0.0052 29.7 10.0 37 331-377 170-206 (317)
493 PRK06292 dihydrolipoamide dehy 37.9 40 0.00087 36.8 4.4 32 332-375 4-35 (460)
494 PLN02342 ornithine carbamoyltr 37.8 4.1E+02 0.009 29.1 11.9 126 269-419 136-267 (348)
495 PRK13301 putative L-aspartate 37.5 69 0.0015 33.9 5.8 116 332-473 3-122 (267)
496 PRK11761 cysM cysteine synthas 37.5 3.9E+02 0.0084 28.1 11.4 96 270-376 105-204 (296)
497 PTZ00367 squalene epoxidase; P 37.4 81 0.0018 36.4 6.9 30 323-352 22-54 (567)
498 COG2355 Zn-dependent dipeptida 37.2 52 0.0011 35.5 5.0 42 425-474 150-191 (313)
499 PRK05868 hypothetical protein; 37.2 41 0.0009 35.9 4.3 21 332-352 2-22 (372)
500 cd00316 Oxidoreductase_nitroge 37.2 1.3E+02 0.0028 32.1 8.0 103 320-450 268-376 (399)
No 1
>KOG1257 consensus NADP+-dependent malic enzyme [Energy production and conversion]
Probab=100.00 E-value=7.1e-224 Score=1763.77 Aligned_cols=559 Identities=65% Similarity=1.045 Sum_probs=546.1
Q ss_pred ccCcccccccccccc-ccccccccccccCCCCccCCCCCHHHHhhcccCCCCCCcccCHHHHHHHHHHHHhcCCCchhHH
Q 007703 31 YGEDRATEDQLVTPW-TISVASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKY 109 (592)
Q Consensus 31 ~~~~~~~~~~~~~~~-~~~~~~G~~ll~~p~~NKG~aFt~~ER~~l~L~GLLPp~v~t~e~Q~~r~~~~~~~~~~~l~Ky 109 (592)
+++...+..+...+| ..++++|+++|+||++|||+|||.+||++|||||||||+|+|+|+|++||+.+|+++++||+||
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~g~~ll~~p~~NKglAFTl~ERq~l~i~GLLPp~v~t~d~Q~~r~~~~l~~~~~~l~ky 88 (582)
T KOG1257|consen 9 YSTAPLTLAHRITPRPVESKKRGYDLLRDPRYNKGLAFTLEERQRLGIHGLLPPVVRTQDEQALRCMNNLRSLTSPLAKY 88 (582)
T ss_pred ccCCCccccccccccccccccCChhhccCCCcccccccCHHHHHhhCccccCCccccCHHHHHHHHHHHHHhccchHHHH
Confidence 333333333334455 6678899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHhhhhhhhhhHHHhhhcccccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEec
Q 007703 110 VAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTD 189 (592)
Q Consensus 110 ~~L~~L~~~Ne~Lfy~ll~~~~ee~lPivYTPtVG~ac~~~s~i~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTD 189 (592)
+||++||+|||+|||++|++|+||+||||||||||+|||+||+|||+|+|||||++|+|||.++|+|||.++|++|||||
T Consensus 89 ~~L~~L~~rNerLfY~~l~~nie~~~PIvYTPTvG~acq~y~~i~r~p~Glfisi~D~Ghi~~~l~nWp~~~V~~IvVTD 168 (582)
T KOG1257|consen 89 IYLMDLQDRNERLFYRLLIDNIEELLPIVYTPTVGLACQQYGLIFRRPQGLFISIKDKGHIKQVLKNWPERNVKAIVVTD 168 (582)
T ss_pred HHHHHHHHhhhHHHHHHHHhhHHHhCCeeecCcHHHHHHHhhhhhccCceeEEEecccchHHHHHHhCCccceeEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceecccCCCCCCccccchhhHHHHHHhcCCCCCceeeEEeecCCCchhcccCcccccccccCCChhhhHHHHHHHHHHH
Q 007703 190 GERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAV 269 (592)
Q Consensus 190 G~rILGLGDlG~~GmgI~iGKl~LYta~gGI~P~~~LPI~LDvGTnNe~LL~Dp~YlG~r~~R~~geeY~~~idefv~av 269 (592)
|||||||||||++|||||+|||+||||||||+|++|||||||||||||+||+||||+|+||+|++|++||+|+||||+||
T Consensus 169 GerILGLGDlG~~GmgIpvgKL~Lyta~~GI~P~~cLPV~LDVGTNNe~Ll~DplYiGLr~~R~~g~eYd~~~dEFm~Av 248 (582)
T KOG1257|consen 169 GERILGLGDLGVNGMGIPVGKLALYTALGGIRPSRCLPVCLDVGTNNEKLLNDPLYIGLRQRRVRGKEYDEFLDEFMEAV 248 (582)
T ss_pred CCceecccccccCcccceecHHHHHHHhcCCChhhceeEEEeccCChHHHhcCccccccccccccccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCeeeeeecCCCchHHHHHHHHcCCCceeccCCcchHHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHH
Q 007703 270 KQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAEL 349 (592)
Q Consensus 270 ~~~fGp~~lIqfEDf~~~~Af~lL~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA~l 349 (592)
+++|||++|||||||+++|||++|+|||++||||||||||||+|+|||||+|+|++|++|+|++|||+|||+||+|||+|
T Consensus 249 ~~~yG~~~lIqFEDF~~~nAfrlL~kYr~~~c~FNDDIQGTaaValAgllaa~rit~~~lsd~~ilf~GAG~A~~GIA~l 328 (582)
T KOG1257|consen 249 VQRYGPNTLIQFEDFANHNAFRLLEKYRNKYCMFNDDIQGTAAVALAGLLAALRITGKPLSDHVILFLGAGEAALGIANL 328 (582)
T ss_pred HHHhCcceEEEehhccchhHHHHHHHhccccceecccccchhHHHHHHHHHHHHHhCCccccceEEEecCchHHhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHH
Q 007703 350 IALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEV 429 (592)
Q Consensus 350 l~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~ev 429 (592)
|+.+|+++ |+|+|||++||||||++|||+++|+.+++++|++|||+++++++|+|||+.||||||||+|++||+|||||
T Consensus 329 ~v~~m~~~-Gl~~eeA~kkIwlvD~~GLi~~~r~~~l~~~~~~fAk~~~~~~~L~e~V~~vKPtvLiG~S~~~g~Fteev 407 (582)
T KOG1257|consen 329 IVMAMVKE-GLSEEEARKKIWLVDSKGLITKGRKASLTEEKKPFAKDHEEIKDLEEAVKEVKPTVLIGASGVGGAFTEEV 407 (582)
T ss_pred HHHHHHHc-CCCHHHHhccEEEEecCceeeccccCCCChhhccccccChHHHHHHHHHHhcCCcEEEecccCCccCCHHH
Confidence 99999996 99999999999999999999999987899999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCCCceEEecCCCCCCCCCCHHHHhccccCcEEEecCCCCCcceeCCeeeCccCCcccccchhhhHHHHHhCC
Q 007703 430 IEAMASFNEVKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGA 509 (592)
Q Consensus 430 v~~Ma~~~e~rPIIFaLSNPt~~aEct~e~A~~wt~G~aifAsGSPF~pV~~~G~~~~p~Q~NN~yiFPGiglG~~~s~a 509 (592)
||+|+++|| |||||||||||+++||||||||+||+|||||||||||+||+++||+|+||||||+|+|||||||+++|++
T Consensus 408 l~~Ma~~~e-rPiIFalSNPT~~aECtae~ay~~t~Gr~ifaSGSPF~pV~~~gK~~~pgQ~NN~yiFPGi~Lg~vlsg~ 486 (582)
T KOG1257|consen 408 LRAMAKSNE-RPIIFALSNPTSKAECTAEQAYKWTKGRAIFASGSPFPPVEYNGKVYVPGQGNNAYIFPGIGLGVVLSGA 486 (582)
T ss_pred HHHHHhcCC-CceEEecCCCccccccCHHHHhhhcCCcEEEecCCCCCCceeCCcEecccCCceeEecchHHHHHHHcCC
Confidence 999999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHHHHHHHcccCccccCCCcccCCCCCchhhHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHhCCccCCCC
Q 007703 510 IRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYR 589 (592)
Q Consensus 510 ~~Itd~m~~aAA~aLA~~v~~~~~~~g~l~P~~~~ir~vs~~VA~aVa~~A~~~G~a~~~~~p~d~~~~i~~~m~~P~Y~ 589 (592)
++|+|+||++||++||++++++++++|.||||+++||+||.+||++|+++|+++|+|+..|+|+|+.+|++++||+|+|+
T Consensus 487 ~~i~D~mfl~Aae~LA~~v~~e~~~~g~lyPpl~~ir~iS~~Ia~aV~~~a~~~glA~~~p~P~d~~~~~~~~~y~~~Y~ 566 (582)
T KOG1257|consen 487 RRIPDEMFLAAAEALAEQVSEEELEKGRLYPPLSNIREISANIAAAVLKYAYEEGLATRYPEPKDKEKFIEESMYNPEYR 566 (582)
T ss_pred ccCCHHHHHHHHHHHHhhCCHhHhhcCCcCCChhHHHHHHHHHHHHHHHHHHhcCccccCCCcccHHHHHHhccCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 007703 590 NY 591 (592)
Q Consensus 590 ~~ 591 (592)
++
T Consensus 567 ~~ 568 (582)
T KOG1257|consen 567 NS 568 (582)
T ss_pred cc
Confidence 85
No 2
>PRK13529 malate dehydrogenase; Provisional
Probab=100.00 E-value=1e-211 Score=1704.23 Aligned_cols=541 Identities=49% Similarity=0.847 Sum_probs=531.0
Q ss_pred cccccccccccCCCCccCCCCCHHHHhhcccCCCCCCcccCHHHHHHHHHHHHhcCCCchhHHHHhHHhhhhhhhhhHHH
Q 007703 47 ISVASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKL 126 (592)
Q Consensus 47 ~~~~~G~~ll~~p~~NKG~aFt~~ER~~l~L~GLLPp~v~t~e~Q~~r~~~~~~~~~~~l~Ky~~L~~L~~~Ne~Lfy~l 126 (592)
.+..+|.++|+||++|||||||.+||++|||+|||||+|+|+|+|++|||.||+++++||+||+||++||+|||+||||+
T Consensus 12 ~~~~~G~~lL~~p~~NKgtaFt~~ER~~lgl~GLLPp~v~t~e~Q~~R~~~~~~~~~~~l~ky~~L~~L~~~Ne~Lfy~l 91 (563)
T PRK13529 12 YTPLRGPALLNNPLLNKGTAFTEEEREEFGLEGLLPPAVETLEEQAERAYRQYQSKPTDLEKHIYLRNLQDRNETLFYRL 91 (563)
T ss_pred eecccchhhhcCcccccccCCCHHHHHhcCCCCCCCCCccCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCchhhHHH
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecCceecccCCCCCCcccc
Q 007703 127 LIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGI 206 (592)
Q Consensus 127 l~~~~ee~lPivYTPtVG~ac~~~s~i~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~GmgI 206 (592)
|++|+||+||||||||||+|||+||++||+|||||||++|+|+|.++|+|||.++|++||||||||||||||||++||||
T Consensus 92 l~~~~ee~~PivYTPTVG~ac~~~s~~~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~Gm~I 171 (563)
T PRK13529 92 LSDHLEEMMPIIYTPTVGEACERFSHIYRRPRGLFISYDDRDRIEDILQNAPNRDIKLIVVTDGERILGIGDQGIGGMGI 171 (563)
T ss_pred HHhCHHHhCCeeecccHHHHHHHHhhcccCCCceEeccCCHHHHHHHHhcCCcccceEEEEeCCceeeeccccCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHhcCCCCCceeeEEeecCCCchhcccCcccccccccCCChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCC
Q 007703 207 PVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFAN 286 (592)
Q Consensus 207 ~iGKl~LYta~gGI~P~~~LPI~LDvGTnNe~LL~Dp~YlG~r~~R~~geeY~~~idefv~av~~~fGp~~lIqfEDf~~ 286 (592)
|+||++|||+||||||++|||||||||||||+||+||+|+|+||+|++|++|++|+||||+||+.+| |+++||||||++
T Consensus 172 ~~GKl~Ly~a~aGI~P~~~lPI~LDvGTnNe~Ll~DP~YlG~r~~R~~g~eY~~f~defv~av~~~~-P~~~I~~EDf~~ 250 (563)
T PRK13529 172 PIGKLSLYTACGGIDPARTLPVVLDVGTNNEQLLNDPLYLGWRHPRIRGEEYDEFVDEFVQAVKRRF-PNALLQFEDFAQ 250 (563)
T ss_pred cccHHHHhhccCCCChhheeceEEecCCCchhhccCccccCcCCCCCchHHHHHHHHHHHHHHHHhC-CCeEEehhhcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred chHHHHHHHHcCCCceeccCCcchHHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhc
Q 007703 287 HNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETR 366 (592)
Q Consensus 287 ~~Af~lL~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~ 366 (592)
+|||++|+|||++||||||||||||+|+|||+|||+|++|++|+||||||+|||+||+|||+||+++|++ +|+|+|||+
T Consensus 251 ~~af~iL~ryr~~i~~FnDDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~-~Gl~~eeA~ 329 (563)
T PRK13529 251 KNARRILERYRDEICTFNDDIQGTGAVTLAGLLAALKITGEPLSDQRIVFLGAGSAGCGIADQIVAAMVR-EGLSEEEAR 329 (563)
T ss_pred chHHHHHHHhccCCCeeccccchHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHH-cCCChhHhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999997 599999999
Q ss_pred CcEEEEccCCcccCCCccCCchhchhhccccCCC---------CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHccC
Q 007703 367 KKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPV---------NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFN 437 (592)
Q Consensus 367 ~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~---------~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~ 437 (592)
++||+||++|||+++|.+ |+++|++|||+.++. .+|+|+|+.+|||||||+|+++|+|||||||+|+++|
T Consensus 330 ~~i~~vD~~GLl~~~r~~-l~~~k~~fa~~~~~~~~~~~~~~~~~L~e~v~~~kPtvLIG~S~~~g~Ft~evv~~Ma~~~ 408 (563)
T PRK13529 330 KRFFMVDRQGLLTDDMPD-LLDFQKPYARKREELADWDTEGDVISLLEVVRNVKPTVLIGVSGQPGAFTEEIVKEMAAHC 408 (563)
T ss_pred CeEEEEcCCCeEeCCCCc-chHHHHHHhhhcccccccccccCCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcC
Confidence 999999999999999975 999999999975543 6899999999999999999999999999999999999
Q ss_pred CCCceEEecCCCCCCCCCCHHHHhccccCcEEEecCCCCCcceeCCeeeCccCCcccccchhhhHHHHHhCCcccCHHHH
Q 007703 438 EVKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDML 517 (592)
Q Consensus 438 e~rPIIFaLSNPt~~aEct~e~A~~wt~G~aifAsGSPF~pV~~~G~~~~p~Q~NN~yiFPGiglG~~~s~a~~Itd~m~ 517 (592)
| |||||||||||++|||||||||+||+|||||||||||+||+|+|++++||||||+|||||||||+++++|++|||+||
T Consensus 409 e-rPIIFaLSNPt~~aE~tpe~a~~~T~Grai~AtGspf~pv~~~G~~~~p~Q~NN~~iFPGiglGa~~~~a~~Itd~m~ 487 (563)
T PRK13529 409 E-RPIIFPLSNPTSRAEATPEDLIAWTDGRALVATGSPFAPVEYNGKTYPIGQCNNAYIFPGLGLGVIASGARRVTDGML 487 (563)
T ss_pred C-CCEEEECCCcCCCcccCHHHHHHhhcCCEEEEECCCCCCeeeCCeEeccCcCcceeecccchhhhhhcCCcCCCHHHH
Confidence 9 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcccCccccCCCcccCCCCCchhhHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHhCCccCCCCCCC
Q 007703 518 LAASEALAKQVTEENFEKGLIYPPFSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 592 (592)
Q Consensus 518 ~aAA~aLA~~v~~~~~~~g~l~P~~~~ir~vs~~VA~aVa~~A~~~G~a~~~~~p~d~~~~i~~~m~~P~Y~~~~ 592 (592)
++||++||++++++++.++.|||++++||+||.+||+||+++|+++|+|+. +.|+|+.+||+++||+|+|+|++
T Consensus 488 ~aAA~alA~~v~~~~l~~~~l~P~~~~ir~vs~~VA~aVa~~A~~~GlA~~-~~~~~~~~~i~~~~w~P~Y~~~~ 561 (563)
T PRK13529 488 MAAAHALADCVPLAKPGEGALLPPVEDIREVSRAIAIAVAKAAIEEGLARE-TSDEDLEQAIEDNMWQPEYRPYR 561 (563)
T ss_pred HHHHHHHHhhCccccCCCCeeECCCcchhhhHHHHHHHHHHHHHHhCCCCC-CCHHHHHHHHHhcCcCCCCcccc
Confidence 999999999999999999999999999999999999999999999999984 67899999999999999999974
No 3
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=100.00 E-value=2.3e-211 Score=1706.14 Aligned_cols=543 Identities=76% Similarity=1.191 Sum_probs=535.9
Q ss_pred cccccccccCCCCccCCCCCHHHHhhcccCCCCCCcccCHHHHHHHHHHHHhcCCCchhHHHHhHHhhhhhhhhhHHHhh
Q 007703 49 VASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLI 128 (592)
Q Consensus 49 ~~~G~~ll~~p~~NKG~aFt~~ER~~l~L~GLLPp~v~t~e~Q~~r~~~~~~~~~~~l~Ky~~L~~L~~~Ne~Lfy~ll~ 128 (592)
..+|+++|+||++|||||||.+||++|||+|||||+|+|+|+|++|||.||++++++|+||+||++||+|||+|||++++
T Consensus 39 ~~~G~~ll~~p~~NKgtaFt~~ER~~lgl~GLlP~~v~t~e~Q~~R~~~~~~~~~~~l~ky~~L~~L~~~Ne~Lfy~ll~ 118 (581)
T PLN03129 39 VASGYDLLRDPRYNKGLAFTETERDRLGLRGLLPPAVLSQELQVKRFMENLRALESPLAKYRALMDLQERNERLFYRVLI 118 (581)
T ss_pred CCcchhhhcCcccccccCCCHHHHhhcCCccCCCCCcCCHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhCcccchhhhh
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecCceecccCCCCCCccccch
Q 007703 129 DNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPV 208 (592)
Q Consensus 129 ~~~ee~lPivYTPtVG~ac~~~s~i~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~GmgI~i 208 (592)
+|++|+||||||||||+||++||++||+|||||||++|+|+|+++|+|||.++|++||||||||||||||||++||||||
T Consensus 119 ~~~~e~lpiiYTPtVg~ac~~~s~~~r~prGlyis~~d~~~i~~~l~n~p~~~v~viVVTDG~rILGLGDlG~~Gm~I~~ 198 (581)
T PLN03129 119 DNIEELLPIVYTPTVGEACQKYGSLFRRPRGLYISLKDKGRVLSMLKNWPERDVQVIVVTDGERILGLGDLGVQGMGIPV 198 (581)
T ss_pred cCHHHhCCeeeCCcHHHHHHHHHHhhcCCCceeecccCHHHHHHHHhcCCCcCceEEEEecCcceeeccccCCCccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhcCCCCCceeeEEeecCCCchhcccCcccccccccCCChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCCch
Q 007703 209 GKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHN 288 (592)
Q Consensus 209 GKl~LYta~gGI~P~~~LPI~LDvGTnNe~LL~Dp~YlG~r~~R~~geeY~~~idefv~av~~~fGp~~lIqfEDf~~~~ 288 (592)
||++|||+||||||++|||||||+|||||+||+||+|+||||+|++|+||++|+||||++|+.+|||+++||||||+++|
T Consensus 199 GKl~Ly~a~aGI~P~~~lPI~LDvGTnNe~LL~DP~YlG~r~~Rv~g~eY~~~~defv~av~~~fGp~~~I~~EDf~~~~ 278 (581)
T PLN03129 199 GKLDLYTAAGGIRPSAVLPVCIDVGTNNEKLLNDPFYIGLRQPRLTGEEYDELVDEFMEAVKQRWGPKVLVQFEDFANKN 278 (581)
T ss_pred hHHHHHHhhcCCChhhccceEEecCCCchhhccCccccCcCCCCCchhhHHHhHHHHHHHHHHHhCCccEEehhhcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCceeccCCcchHHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCc
Q 007703 289 AFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 368 (592)
Q Consensus 289 Af~lL~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~ 368 (592)
||++|+|||+++|||||||||||+|+|||+|||+|++|++|+||||||+|||+||+|||+||+.+|+++.|+|+|||+++
T Consensus 279 af~iL~ryr~~i~~FnDDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~ 358 (581)
T PLN03129 279 AFRLLQRYRTTHLCFNDDIQGTAAVALAGLLAALRATGGDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKR 358 (581)
T ss_pred HHHHHHHhccCCCEeccccchHHHHHHHHHHHHHHHhCCchhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999987669999999999
Q ss_pred EEEEccCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHccCCCCceEEecCC
Q 007703 369 ICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVKPLILALSN 448 (592)
Q Consensus 369 i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~e~rPIIFaLSN 448 (592)
||+||++|||+++|.++|+++|++||++.++..+|+|+|+.+|||||||+|+++|+|||||||+|+++|+ |||||||||
T Consensus 359 i~~vD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~~-rPIIFaLSN 437 (581)
T PLN03129 359 IWLVDSKGLVTKSRKDSLQPFKKPFAHDHEPGASLLEAVKAIKPTVLIGLSGVGGTFTKEVLEAMASLNE-RPIIFALSN 437 (581)
T ss_pred EEEEcCCCeEeCCCCccChHHHHHHHhhcccCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCC-CCEEEECCC
Confidence 9999999999999976699999999998777899999999999999999999999999999999999999 999999999
Q ss_pred CCCCCCCCHHHHhccccCcEEEecCCCCCcceeCCeeeCccCCcccccchhhhHHHHHhCCcccCHHHHHHHHHHHHccc
Q 007703 449 PTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQV 528 (592)
Q Consensus 449 Pt~~aEct~e~A~~wt~G~aifAsGSPF~pV~~~G~~~~p~Q~NN~yiFPGiglG~~~s~a~~Itd~m~~aAA~aLA~~v 528 (592)
||++|||||||||+||+|+|||||||||+||+|+||+++||||||+|||||||||+++++|++|||+||++||++||+++
T Consensus 438 Pt~~~E~~pe~a~~~T~G~ai~AtGSPf~pv~~~Gr~~~p~Q~NN~~iFPGiglGal~~~a~~Itd~m~~aAA~aLA~~v 517 (581)
T PLN03129 438 PTSKAECTAEEAYTWTGGRAIFASGSPFDPVEYNGKTFHPGQANNAYIFPGIGLGALLSGAIRVTDDMLLAAAEALAAQV 517 (581)
T ss_pred CCCCcCcCHHHHHHhhcCCEEEEeCCCCCCeeeCCeeecCccccceeeccchhhHHHhcCCcCCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCcccCCCCCchhhHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHhCCccCCCCCCC
Q 007703 529 TEENFEKGLIYPPFSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 592 (592)
Q Consensus 529 ~~~~~~~g~l~P~~~~ir~vs~~VA~aVa~~A~~~G~a~~~~~p~d~~~~i~~~m~~P~Y~~~~ 592 (592)
+++++..+.|||++++||+||.+||+||+++|+++|+|+..++|+++.+|++++||+|+|+|++
T Consensus 518 ~~~~l~~~~l~P~~~~ir~vs~~VA~aVa~~A~~~G~A~~~~~~~~~~~~i~~~mw~P~Y~~~~ 581 (581)
T PLN03129 518 TEEELAKGAIYPPFSRIRDISAHVAAAVAAKAYEEGLATRLPRPEDLVEYAESCMYSPVYRPYR 581 (581)
T ss_pred CcccCCCCeecCCCcchhHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHcCcCCCCCCCC
Confidence 9999999999999999999999999999999999999987778899999999999999999985
No 4
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=100.00 E-value=2.6e-209 Score=1684.29 Aligned_cols=539 Identities=50% Similarity=0.841 Sum_probs=526.8
Q ss_pred ccccccccccccCCCCccCCCCCHHHHhhcccCCCCCCcccCHHHHHHHHHHHHhcCCCchhHHHHhHHhhhhhhhhhHH
Q 007703 46 TISVASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYK 125 (592)
Q Consensus 46 ~~~~~~G~~ll~~p~~NKG~aFt~~ER~~l~L~GLLPp~v~t~e~Q~~r~~~~~~~~~~~l~Ky~~L~~L~~~Ne~Lfy~ 125 (592)
..+..+|.++|+||++|||||||.+||++|||+|||||+|+|+|+|++|+|.||+++++||+||+||++||+|||+||||
T Consensus 13 ~~~~~~G~~lL~~p~~NKgtAFt~~ER~~l~l~GLlPp~v~t~e~Q~~R~~~~~~~~~~~l~Ky~~L~~L~~~Ne~Lfy~ 92 (559)
T PTZ00317 13 VPSNARGVDVLRNRFLNKGTAFTAEEREHLGIEGLLPPTVETLEQQVERLWTQFNRIETPINKYQFLRNIHDTNETLFYA 92 (559)
T ss_pred cccCCcchhhhcCcccccccCCCHHHHHhcCCCCCCCCCccCHHHHHHHHHHHHhhCCChHHHHHHHHHHhhcCchHHHH
Confidence 44567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcccccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecCceecccCCCCCCccc
Q 007703 126 LLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMG 205 (592)
Q Consensus 126 ll~~~~ee~lPivYTPtVG~ac~~~s~i~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~Gmg 205 (592)
+|++|+|||||||||||||+||++||++||+|||||||++|||+|.++|+|||.++|++||||||||||||||||++|||
T Consensus 93 ll~~~~ee~lpivYTPtVg~ac~~~s~~~r~p~Gly~s~~drg~i~~~l~Nwp~~~v~viVVTDG~rILGLGDlG~~Gm~ 172 (559)
T PTZ00317 93 LLLKYLKELLPIIYTPTVGEACQNYSNLFQRDRGLYLSRAHKGKIREILKNWPYDNVDVIVITDGSRILGLGDLGANGMG 172 (559)
T ss_pred HHHhCHHHhcceecCcchHHHHHHHHhcccccCceEEeecCcchHHHHHhcCCccCceEEEEeccccccccCCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHhcCCCCCceeeEEeecCCCchhcccCcccccccccCCChhhhHHHHHHHHHHHHHhcCCCeeeeeecCC
Q 007703 206 IPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFA 285 (592)
Q Consensus 206 I~iGKl~LYta~gGI~P~~~LPI~LDvGTnNe~LL~Dp~YlG~r~~R~~geeY~~~idefv~av~~~fGp~~lIqfEDf~ 285 (592)
||+||++|||+||||||++|||||||||||||+||+||+||||||+|++|++|++|+||||+||+.+| |+++||||||+
T Consensus 173 I~~GKl~Ly~a~aGI~P~~~lPI~LDvGTnN~~LL~DPlYlG~r~~R~~g~eY~~f~defv~av~~~~-P~~~Iq~EDf~ 251 (559)
T PTZ00317 173 ISIGKLSLYVAGGGINPSRVLPVVLDVGTNNEKLLNDPLYLGLREKRLDDDEYYELLDEFMEAVSSRW-PNAVVQFEDFS 251 (559)
T ss_pred ccccHHHHHHhhcCCChhhccceEEecCCChhhhccCcccccccCCCCChhhHHHHHHHHHHHHHHhC-CCeEEehhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred CchHHHHHHHHcCCCceeccCCcchHHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhh
Q 007703 286 NHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEET 365 (592)
Q Consensus 286 ~~~Af~lL~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA 365 (592)
++|||++|+|||+++|||||||||||+|+|||+|||+|++|++|+||||||+|||+||+|||+||+.+|++ +|+|+|||
T Consensus 252 ~~naf~iL~kyr~~i~~FnDDiQGTaaV~lAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~m~~-~Gls~eeA 330 (559)
T PTZ00317 252 NNHCFDLLERYQNKYRCFNDDIQGTGAVIAAGFLNALKLSGVPPEEQRIVFFGAGSAAIGVANNIADLAAE-YGVTREEA 330 (559)
T ss_pred CccHHHHHHHhccCCCEecccchhHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHH-cCCChhHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987 59999999
Q ss_pred cCcEEEEccCCcccCCCccCCchhchhhcccc--CC---CCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHccCCCC
Q 007703 366 RKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH--EP---VNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVK 440 (592)
Q Consensus 366 ~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~--~~---~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~e~r 440 (592)
++|||+||++|||+++|.++|+++|++|||+. .+ ..+|+|||+.+|||||||+|+++|+|||||||+|+++|+ |
T Consensus 331 ~~~i~~vD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~~~~~~L~e~v~~~KPtvLIG~S~~~g~Ft~evv~~Ma~~~~-r 409 (559)
T PTZ00317 331 LKSFYLVDSKGLVTTTRGDKLAKHKVPFARTDISAEDSSLKTLEDVVRFVKPTALLGLSGVGGVFTEEVVKTMASNVE-R 409 (559)
T ss_pred cCeEEEEcCCCeEeCCCCccccHHHHHHhccccccccccCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCC-C
Confidence 99999999999999999767999999999973 33 579999999999999999999999999999999999999 9
Q ss_pred ceEEecCCCCCCCCCCHHHHhccccCcEEEecCCCCCcceeCCeeeCccCCcccccchhhhHHHHHhCCcccCHHHHHHH
Q 007703 441 PLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAA 520 (592)
Q Consensus 441 PIIFaLSNPt~~aEct~e~A~~wt~G~aifAsGSPF~pV~~~G~~~~p~Q~NN~yiFPGiglG~~~s~a~~Itd~m~~aA 520 (592)
||||||||||++|||||||||+||+|||||||||||+||+||||+++||||||+|||||||||+++++|++|||+||++|
T Consensus 410 PIIFaLSNPt~~aE~tpeda~~~T~Grai~AtGspf~pv~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~m~~aA 489 (559)
T PTZ00317 410 PIIFPLSNPTSKAECTAEDAYKWTNGRAIVASGSPFPPVTLNGKTIQPSQGNNLYVFPGVGLGCAIAQPSYIPDEMLIAA 489 (559)
T ss_pred CEEEECCCCCCCCCcCHHHHHhhccCCEEEEECCCCCCcccCCeeeccCcCcceeeccchhhhhHhhcccCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcccCccccCCCcccCCCCCchhhHHHHHHHHHHHHHHcCCCCC--CCC-chhHHHHHHhCCccCC
Q 007703 521 SEALAKQVTEENFEKGLIYPPFSNIRKISANIAANVAAKAYELGVATR--LPR-PQNLVKCAESCMYTPV 587 (592)
Q Consensus 521 A~aLA~~v~~~~~~~g~l~P~~~~ir~vs~~VA~aVa~~A~~~G~a~~--~~~-p~d~~~~i~~~m~~P~ 587 (592)
|++||++++++++..|.|||++++||+||.+||+||+++|+++|+|+. .|+ ++|+.+||+++||+|.
T Consensus 490 A~aLA~~v~~~~l~~~~l~P~~~~ir~vs~~VA~aV~~~A~~~G~A~~~~~~~~~~~~~~~i~~~~w~P~ 559 (559)
T PTZ00317 490 AASLATLVSEEDLREGKLYPPLEDIREISAHIAVDVIEEAQEMGIAKNKDLPDNRDELLALVKDRMWVPK 559 (559)
T ss_pred HHHHHhhCCccccCCCeeeCCCccHhHHHHHHHHHHHHHHHHhCCCccCCCCCCHHHHHHHHHhcCcCCC
Confidence 999999999999999999999999999999999999999999999985 344 3689999999999995
No 5
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=100.00 E-value=1.3e-118 Score=943.28 Aligned_cols=427 Identities=37% Similarity=0.536 Sum_probs=382.6
Q ss_pred ccCHHHHHHHHHHHHhcCCC-chhHHHHhHHhhhhhhhhhHHHhhhcccccCCcccchhhHHHHHHHhhhhcCCCccccc
Q 007703 85 VISQQLQEKKLMNSIRQYEV-PLQKYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYIS 163 (592)
Q Consensus 85 v~t~e~Q~~r~~~~~~~~~~-~l~Ky~~L~~L~~~Ne~Lfy~ll~~~~ee~lPivYTPtVG~ac~~~s~i~r~p~Glyis 163 (592)
++|+| |.+|.+.++..+.+ +|++|.|+ ++|+.+||.++-.|..|+|||+||||||++|++||+.|++++
T Consensus 1 v~t~~-q~~~~~~~~~~~~~~aL~~h~~~----~~gki~~~~~~~~~~~~dl~l~YTPgVa~~~~~i~~d~~~~~----- 70 (432)
T COG0281 1 VETIE-QAERAYEQYEQLKTEALDKHEYL----DPGKILIYPTVPLHTQEDLPLAYTPGVAEACKAISEDPRKAY----- 70 (432)
T ss_pred CccHH-HHHHHHHHHhhhhhhhHHHhccC----CCCeEEEEEcccccCHhhcCcccCCchHHHHHHHHhCcchhh-----
Confidence 57889 99999999999888 99999999 899999999999999999999999999999999999888875
Q ss_pred ccCcchHHHHHhcCCCCCeeEEEEecCceecccCCCC-CCccccchhhHHHHHHhcCCCCCceeeEEeecCCCchhcccC
Q 007703 164 LKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLG-CQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKD 242 (592)
Q Consensus 164 ~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG-~~GmgI~iGKl~LYta~gGI~P~~~LPI~LDvGTnNe~LL~D 242 (592)
.++.++++|||||||+|||||||+| ..||+||+||++|||+||||| +|||+||+|||||
T Consensus 71 ------------~yt~~~n~vaVvTDgtaVLGLGniGp~ag~pVmeGKa~Lfk~faGid---~~pI~ld~~~~~e----- 130 (432)
T COG0281 71 ------------SYTARGNLVAVVTDGTAVLGLGNIGPLAGKPVMEGKAVLFKAFAGID---VLPIELDVGTNNE----- 130 (432)
T ss_pred ------------hcCCCCceEEEEECCceeecccccccccCcchhhhHHHHHHHhcCCC---ceeeEeeCCChHH-----
Confidence 4455566999999999999999999 679999999999999999999 9999999999987
Q ss_pred cccccccccCCChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCCchHHHHHHHHcCCCceeccCCcchHHHHHHHHHHHH
Q 007703 243 EFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAAL 322 (592)
Q Consensus 243 p~YlG~r~~R~~geeY~~~idefv~av~~~fGp~~lIqfEDf~~~~Af~lL~ryr~~~~~FNDDiQGTaaV~LAgll~Al 322 (592)
+++||++++++||. ..+|||||..-|+.+.+.|||.+||||||||||||+|+|||||||+
T Consensus 131 -------------------i~~~Vkal~p~Fgg-inLedi~ap~cf~ie~~lr~~~~IPvFhDDqqGTaiv~lA~llnal 190 (432)
T COG0281 131 -------------------IIEFVKALEPTFGG-INLEDIDAPRCFAIEERLRYRMNIPVFHDDQQGTAIVTLAALLNAL 190 (432)
T ss_pred -------------------HHHHHHHhhhcCCC-cceeecccchhhHHHHHHhhcCCCCcccccccHHHHHHHHHHHHHH
Confidence 89999999999955 4444444444444445667778999999999999999999999999
Q ss_pred HHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCcc-CCchhchhhcc-ccCCC
Q 007703 323 KLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD-SLQHFKKPWAH-EHEPV 400 (592)
Q Consensus 323 r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~-~l~~~k~~fA~-~~~~~ 400 (592)
|++|++|+|+||||+|||+||+||++||..++++ +++||+|||+|+|+++|.+ .++++|..+|. +....
T Consensus 191 k~~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~---------~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~~~ 261 (432)
T COG0281 191 KLTGKKLKDQKIVINGAGAAGIAIADLLVAAGVK---------EENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTGER 261 (432)
T ss_pred HHhCCCccceEEEEeCCcHHHHHHHHHHHHhCCC---------cccEEEEecCCcccCCCcccccchHHHHHHHhhhccc
Confidence 9999999999999999999999999999987543 2899999999999999976 36777777775 44444
Q ss_pred CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHccCCCCceEEecCCCCCCCCCCHHHHhccccCcEEEecCCCCCcce
Q 007703 401 NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFE 480 (592)
Q Consensus 401 ~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~e~rPIIFaLSNPt~~aEct~e~A~~wt~G~aifAsGSPF~pV~ 480 (592)
.+ .+++ .+||||||+|++ |+||+|+|++|++ +|||||||||| +|++||||.+|++|++|+|||||
T Consensus 262 ~~-~~~~--~~adv~iG~S~~-G~~t~e~V~~Ma~----~PiIfalaNP~--pEi~Pe~a~~~~~~aaivaTGrs----- 326 (432)
T COG0281 262 TL-DLAL--AGADVLIGVSGV-GAFTEEMVKEMAK----HPIIFALANPT--PEITPEDAKEWGDGAAIVATGRS----- 326 (432)
T ss_pred cc-cccc--cCCCEEEEcCCC-CCcCHHHHHHhcc----CCEEeecCCCC--ccCCHHHHhhcCCCCEEEEeCCC-----
Confidence 42 3444 569999999998 8999999999997 89999999999 99999999999999999999975
Q ss_pred eCCeeeCccCCcccccchhhhHHHHHhCCcccCHHHHHHHHHHHHcccCccccCCCcccCCCCCchhhHHHHHHHHHHHH
Q 007703 481 YNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRKISANIAANVAAKA 560 (592)
Q Consensus 481 ~~G~~~~p~Q~NN~yiFPGiglG~~~s~a~~Itd~m~~aAA~aLA~~v~~~~~~~g~l~P~~~~ir~vs~~VA~aVa~~A 560 (592)
++|||+||+|+|||||+|++++||++|||+|++|||+|||+++.++.. .+.|+|+++++|.+|. ||.||+++|
T Consensus 327 -----d~PnQvNNvL~FPgIfrGaLd~rA~~ItdeM~~AAa~AiA~~~~~~~~-~~~iiP~~~d~r~~~~-vA~AVa~aA 399 (432)
T COG0281 327 -----DYPNQVNNVLIFPGIFRGALDVRAKTITDEMKIAAAEAIADLAREEVL-EEYIIPPPFDPRVISR-VAVAVAKAA 399 (432)
T ss_pred -----CCcccccceeEcchhhhhhHhhccccCCHHHHHHHHHHHHhhccccCC-cCCCCCCCCchhHHHH-HHHHHHHHH
Confidence 566699999999999999999999999999999999999999887665 7899999999999998 999999999
Q ss_pred HHcCCCCCCCCc-hhHHHHHHhCCccCCCCCCC
Q 007703 561 YELGVATRLPRP-QNLVKCAESCMYTPVYRNYR 592 (592)
Q Consensus 561 ~~~G~a~~~~~p-~d~~~~i~~~m~~P~Y~~~~ 592 (592)
.++|+|+..+.. +++.++++..+|.|.|.+++
T Consensus 400 ~~~GvA~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (432)
T COG0281 400 MEEGVARRPIDDEEAYEQALEARLWKPEYRMKR 432 (432)
T ss_pred HHcCCccCCCCCHHHHHHHHHHHhcCcccccCC
Confidence 999999965554 46899999999999998763
No 6
>PRK12861 malic enzyme; Reviewed
Probab=100.00 E-value=1.1e-110 Score=942.76 Aligned_cols=370 Identities=32% Similarity=0.495 Sum_probs=336.9
Q ss_pred cccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecCceecccCCCCCCc-cccchhh
Q 007703 132 EELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQG-MGIPVGK 210 (592)
Q Consensus 132 ee~lPivYTPtVG~ac~~~s~i~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~G-mgI~iGK 210 (592)
.+.|.++|||||+++|++ |+++|+++| .|+.+.+.|+|||||||||||||+|++| ||||+||
T Consensus 34 ~~dl~l~YtPgVa~~c~~---i~~~p~~~~--------------~~t~r~n~v~VvtdG~~vLGLGdiG~~a~~pvmeGK 96 (764)
T PRK12861 34 QRDLALAYTPGVASACEE---IAADPLNAF--------------RFTSRGNLVGVITNGTAVLGLGNIGALASKPVMEGK 96 (764)
T ss_pred hHHceeecCCchHHHHHH---HHhChHhhh--------------hhhccCcEEEEEecchhhccCCCcCcccccchHHHH
Confidence 445999999999999999 899999997 4445555699999999999999999997 9999999
Q ss_pred HHHHHHhcCCCCCceeeEEeecCCCchhcccCcccccccccCCChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCCchHH
Q 007703 211 LALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAF 290 (592)
Q Consensus 211 l~LYta~gGI~P~~~LPI~LDvGTnNe~LL~Dp~YlG~r~~R~~geeY~~~idefv~av~~~fGp~~lIqfEDf~~~~Af 290 (592)
++|||+||||| ++|+|||| +|| ++|| |||++++++||. ||||||++||||
T Consensus 97 ~~L~~~~agid-------~~di~~~~----~dp---------------d~~v-~~v~a~~~~fg~---i~lED~~~p~~f 146 (764)
T PRK12861 97 AVLFKKFAGID-------VFDIEINE----TDP---------------DKLV-DIIAGLEPTFGG---INLEDIKAPECF 146 (764)
T ss_pred HHHHhhccCCC-------ccccccCC----CCH---------------HHHH-HHHHHHHhhcCC---ceeeeccCchHH
Confidence 99999999999 56666666 677 7888 999999999977 999999999999
Q ss_pred HHHHHHcC--CCceeccCCcchHHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCc
Q 007703 291 ELLAKYGT--THLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 368 (592)
Q Consensus 291 ~lL~ryr~--~~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~ 368 (592)
++|+|||+ +||||||||||||+|+|||||||+|++|++|+||||||+|||+||+|||++|+. .|+++| +
T Consensus 147 ~il~~~~~~~~ipvf~DD~qGTa~v~lA~llnal~~~gk~l~d~~iv~~GAGaAg~~ia~~l~~-----~G~~~~----~ 217 (764)
T PRK12861 147 TVERKLRERMKIPVFHDDQHGTAITVSAAFINGLKVVGKSIKEVKVVTSGAGAAALACLDLLVD-----LGLPVE----N 217 (764)
T ss_pred HHHHHHHhcCCCCeeccccchHHHHHHHHHHHHHHHhCCChhHcEEEEECHhHHHHHHHHHHHH-----cCCChh----h
Confidence 99999998 699999999999999999999999999999999999999999999999999975 499864 9
Q ss_pred EEEEccCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHccCCCCceEEecCC
Q 007703 369 ICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVKPLILALSN 448 (592)
Q Consensus 369 i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~e~rPIIFaLSN 448 (592)
||+||++|||+++|.+.|+++|++||++. +..+|+|+|+. ||||||+|+ +|+||+|+|++|++ |||||||||
T Consensus 218 i~~~D~~Gli~~~r~~~l~~~k~~~a~~~-~~~~L~eai~~--advliG~S~-~g~ft~e~v~~Ma~----~PIIFaLsN 289 (764)
T PRK12861 218 IWVTDIEGVVYRGRTTLMDPDKERFAQET-DARTLAEVIGG--ADVFLGLSA-GGVLKAEMLKAMAA----RPLILALAN 289 (764)
T ss_pred EEEEcCCCeeeCCCcccCCHHHHHHHhhc-CCCCHHHHHhc--CCEEEEcCC-CCCCCHHHHHHhcc----CCEEEECCC
Confidence 99999999999999766999999999985 45799999998 899999998 89999999999996 999999999
Q ss_pred CCCCCCCCHHHHhccccCcEEEecCCCCCcceeCCeeeCccCCcccccchhhhHHHHHhCCcccCHHHHHHHHHHHHccc
Q 007703 449 PTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQV 528 (592)
Q Consensus 449 Pt~~aEct~e~A~~wt~G~aifAsGSPF~pV~~~G~~~~p~Q~NN~yiFPGiglG~~~s~a~~Itd~m~~aAA~aLA~~v 528 (592)
|| +|||||||++ |+|+|||||| |+++|||+||+|+|||||+|+++++|++|||+|+++||++||+++
T Consensus 290 Pt--pE~~pe~a~~-~~g~aivaTG----------rs~~pnQ~NN~l~FPgi~~Gal~~~a~~I~~~M~~aAa~alA~~~ 356 (764)
T PRK12861 290 PT--PEIFPELAHA-TRDDVVIATG----------RSDYPNQVNNVLCFPYIFRGALDVGATTITREMEIAAVHAIAGLA 356 (764)
T ss_pred CC--ccCCHHHHHh-cCCCEEEEeC----------CcCCCCccceeeecchhhHHHHHcCCccCCHHHHHHHHHHHHhhC
Confidence 99 8999999987 9999999997 799999999999999999999999999999999999999999999
Q ss_pred CccccC------------CCccc--CCCCCchhhHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHh
Q 007703 529 TEENFE------------KGLIY--PPFSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAES 581 (592)
Q Consensus 529 ~~~~~~------------~g~l~--P~~~~ir~vs~~VA~aVa~~A~~~G~a~~~~~p~d~~~~i~~ 581 (592)
+++++. .|.+| |+..+ ++||.+||.||+++|+++|+|+. |. +|+.+|+++
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~iiP~~~~-~~v~~~VA~aVa~~a~~~GvA~~-~~-~~~~~~~~~ 420 (764)
T PRK12861 357 EEEQNDVVAAAYGAYDVSFGPQYLIPKPFD-PRLIVRIAPAVAKAAMEGGVATR-PI-ADLDAYVEQ 420 (764)
T ss_pred CcccCHHHHHhhccccccCCCCCCCCCCCC-hhHHHHHHHHHHHHHHHhCCCCC-Cc-hhHHHHHHH
Confidence 987533 45555 95555 68999999999999999999985 32 566666544
No 7
>PRK12862 malic enzyme; Reviewed
Probab=100.00 E-value=1.1e-109 Score=939.20 Aligned_cols=369 Identities=29% Similarity=0.455 Sum_probs=338.7
Q ss_pred cccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecCceecccCCCCCCc-cccchhh
Q 007703 132 EELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQG-MGIPVGK 210 (592)
Q Consensus 132 ee~lPivYTPtVG~ac~~~s~i~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~G-mgI~iGK 210 (592)
.+.|.++|||||+++|++ |+++|+++| .|+.+.+.|||||||||||||||+|++| ||||+||
T Consensus 38 ~~dl~~~ytpgv~~~~~~---i~~~~~~~~--------------~~t~~~n~v~vvtdg~~vLGlGd~G~~~~~pv~egK 100 (763)
T PRK12862 38 QRDLALAYSPGVAAPCLE---IAADPANAA--------------RYTSRGNLVAVVSNGTAVLGLGNIGPLASKPVMEGK 100 (763)
T ss_pred HHHceeeeCCchHHHHHH---HHhChHhhh--------------hcccCCcEEEEEechhhhccccccCcccccchHHHH
Confidence 345999999999999999 789999998 6677778899999999999999999996 9999999
Q ss_pred HHHHHHhcCCCCCceeeEEeecCCCchhcccCcccccccccCCChhhhHHHHHHHHHHHHHhcCCC-eeeeeecCCCchH
Q 007703 211 LALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEK-VLIQFEDFANHNA 289 (592)
Q Consensus 211 l~LYta~gGI~P~~~LPI~LDvGTnNe~LL~Dp~YlG~r~~R~~geeY~~~idefv~av~~~fGp~-~lIqfEDf~~~~A 289 (592)
++|||+||||| ++|| ||||+ || ||||++|+..| |+ ..||||||+++||
T Consensus 101 ~~l~~~~~gi~---~~~i----~~~~~----d~-------------------d~~v~~v~~~~-p~f~~i~~ED~~~~~~ 149 (763)
T PRK12862 101 AVLFKKFAGID---VFDI----ELDES----DP-------------------DKLVEIVAALE-PTFGGINLEDIKAPEC 149 (763)
T ss_pred HHHHHhhcCCC---cccc----ccCCC----CH-------------------HHHHHHHHHhC-CCcceeeeecccCchH
Confidence 99999999999 5555 55565 55 89999999999 88 7999999999999
Q ss_pred HHHHHHHcCC--CceeccCCcchHHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcC
Q 007703 290 FELLAKYGTT--HLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRK 367 (592)
Q Consensus 290 f~lL~ryr~~--~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~ 367 (592)
|+||+|||++ ||||||||||||+|+||||+||+|++|++|+||||||+|||+||+|||+||+. .|+++ +
T Consensus 150 f~i~~~~~~~~~ip~f~DD~~GTa~v~la~l~~a~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~-----~G~~~----~ 220 (763)
T PRK12862 150 FYIERELRERMKIPVFHDDQHGTAIIVAAALLNGLKLVGKDIEDVKLVASGAGAAALACLDLLVS-----LGVKR----E 220 (763)
T ss_pred HHHHHHHHhcCCCceEecCcccHHHHHHHHHHHHHHHhCCChhhcEEEEEChhHHHHHHHHHHHH-----cCCCc----c
Confidence 9999999986 89999999999999999999999999999999999999999999999999987 39874 8
Q ss_pred cEEEEccCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHccCCCCceEEecC
Q 007703 368 KICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVKPLILALS 447 (592)
Q Consensus 368 ~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~e~rPIIFaLS 447 (592)
+|||||++|||+++|.+.|+++|++||++. +..+|+|+|+. ||||||+|+ +|+||+|+|++|+ + ||||||||
T Consensus 221 ~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~-~~~~l~e~~~~--~~v~iG~s~-~g~~~~~~v~~M~---~-~piifals 292 (763)
T PRK12862 221 NIWVTDIKGVVYEGRTELMDPWKARYAQKT-DARTLAEVIEG--ADVFLGLSA-AGVLKPEMVKKMA---P-RPLIFALA 292 (763)
T ss_pred cEEEEcCCCeeeCCCCccccHHHHHHhhhc-ccCCHHHHHcC--CCEEEEcCC-CCCCCHHHHHHhc---c-CCEEEeCC
Confidence 999999999999999766999999999985 45799999998 999999999 8999999999999 5 99999999
Q ss_pred CCCCCCCCCHHHHhccccCcEEEecCCCCCcceeCCeeeCccCCcccccchhhhHHHHHhCCcccCHHHHHHHHHHHHcc
Q 007703 448 NPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQ 527 (592)
Q Consensus 448 NPt~~aEct~e~A~~wt~G~aifAsGSPF~pV~~~G~~~~p~Q~NN~yiFPGiglG~~~s~a~~Itd~m~~aAA~aLA~~ 527 (592)
||| |||||||||+||+| |||||| |+++|||+||+|+|||||+|+++++|++|||+|+++||++||++
T Consensus 293 NP~--~E~~p~~a~~~~~~-~i~atG----------rs~~p~Q~NN~~~FPgi~~g~l~~~a~~i~~~m~~aaa~ala~~ 359 (763)
T PRK12862 293 NPT--PEILPEEARAVRPD-AIIATG----------RSDYPNQVNNVLCFPYIFRGALDVGATTINEEMKIAAVRAIAEL 359 (763)
T ss_pred CCc--ccCCHHHHHHhcCC-EEEEEC----------CcCCCCcccceeeccchhhhHHhcCCeeCCHHHHHHHHHHHHhc
Confidence 999 89999999999999 999998 79999999999999999999999999999999999999999999
Q ss_pred cCccc--------------cCCCcccCCCCCchhhHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHh
Q 007703 528 VTEEN--------------FEKGLIYPPFSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAES 581 (592)
Q Consensus 528 v~~~~--------------~~~g~l~P~~~~ir~vs~~VA~aVa~~A~~~G~a~~~~~p~d~~~~i~~ 581 (592)
+++++ +....|||+..+ ++||..||.+|+++|+++|+|+. + .+|+.+|+++
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~i~P~~~~-~~v~~~va~aVa~~a~~~g~a~~-~-~~~~~~~~~~ 424 (763)
T PRK12862 360 AREEQSDVVAAAYGGEDLSFGPDYLIPKPFD-PRLILKIAPAVAQAAMDSGVATR-P-IEDMDAYREQ 424 (763)
T ss_pred ccccCCHHHHHhhccccccCCCCcccCCCCC-hhHHHHHHHHHHHHHHHhCCCCC-C-chhHHHHHHH
Confidence 99873 445569996666 78999999999999999999985 3 3466676654
No 8
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=100.00 E-value=2.1e-108 Score=924.83 Aligned_cols=358 Identities=32% Similarity=0.505 Sum_probs=334.2
Q ss_pred cccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecCceecccCCCCCC-ccccchhh
Q 007703 132 EELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQ-GMGIPVGK 210 (592)
Q Consensus 132 ee~lPivYTPtVG~ac~~~s~i~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~-GmgI~iGK 210 (592)
.+.|+++||||||++|+. |+++|+++| ++.+|| +.|+|||||+|||||||+|++ |||||+||
T Consensus 30 ~~dl~~~Ytpgv~~~c~~---i~~~~~~~~-~~t~~~-------------n~v~vvtdg~~vLGlGd~G~~a~~pv~egK 92 (752)
T PRK07232 30 QRDLSLAYSPGVAAPCLE---IAKDPADAY-KYTARG-------------NLVAVISNGTAVLGLGNIGALASKPVMEGK 92 (752)
T ss_pred hhhcceecCCchHHHHHH---HHhChhhcc-ccccCC-------------cEEEEEccchhhccccccccccCccHHHHH
Confidence 445999999999999995 889999999 666665 359999999999999999999 89999999
Q ss_pred HHHHHHhcCCCCCceeeEEeecCCCchhcccCcccccccccCCChhhhHHHHHHHHHHHHHhcCCCe-eeeeecCCCchH
Q 007703 211 LALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKV-LIQFEDFANHNA 289 (592)
Q Consensus 211 l~LYta~gGI~P~~~LPI~LDvGTnNe~LL~Dp~YlG~r~~R~~geeY~~~idefv~av~~~fGp~~-lIqfEDf~~~~A 289 (592)
++|||+||||| + +|+||||++ +||||++|+..| |.. +||||||+++||
T Consensus 93 ~~l~~~~~gid---~----~~i~~~~~d-----------------------~de~v~~v~~~~-p~~g~i~~ED~~~p~~ 141 (752)
T PRK07232 93 GVLFKKFAGID---V----FDIEVDEED-----------------------PDKFIEAVAALE-PTFGGINLEDIKAPEC 141 (752)
T ss_pred HHHHHhhcCCC---c----cccccCCCC-----------------------HHHHHHHHHHhC-CCccEEeeeecCCchH
Confidence 99999999999 5 555556663 799999999999 775 999999999999
Q ss_pred HHHHHHHcCC--CceeccCCcchHHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcC
Q 007703 290 FELLAKYGTT--HLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRK 367 (592)
Q Consensus 290 f~lL~ryr~~--~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~ 367 (592)
|++|+|||++ ||||||||||||+|+||||+||+|++|++|+||||||+|||+||+|||+||+. .|++ ++
T Consensus 142 f~i~~~~~~~~~ip~f~DD~~GTa~v~lA~l~na~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~-----~G~~----~~ 212 (752)
T PRK07232 142 FYIEEKLRERMDIPVFHDDQHGTAIISAAALLNALELVGKKIEDVKIVVSGAGAAAIACLNLLVA-----LGAK----KE 212 (752)
T ss_pred HHHHHHHHHhcCCCeeccccchHHHHHHHHHHHHHHHhCCChhhcEEEEECccHHHHHHHHHHHH-----cCCC----cc
Confidence 9999999985 89999999999999999999999999999999999999999999999999986 4887 68
Q ss_pred cEEEEccCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHccCCCCceEEecC
Q 007703 368 KICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVKPLILALS 447 (592)
Q Consensus 368 ~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~e~rPIIFaLS 447 (592)
+||+||++|||+++|.++|+++|++||++ .+..+|+|+|+. ||||||+|+ +|+||+|+|++|++ ||||||||
T Consensus 213 ~i~~~D~~G~i~~~r~~~~~~~k~~~a~~-~~~~~l~~~i~~--~~v~iG~s~-~g~~~~~~v~~M~~----~piifals 284 (752)
T PRK07232 213 NIIVCDSKGVIYKGRTEGMDEWKAAYAVD-TDARTLAEAIEG--ADVFLGLSA-AGVLTPEMVKSMAD----NPIIFALA 284 (752)
T ss_pred cEEEEcCCCeecCCCcccccHHHHHHhcc-CCCCCHHHHHcC--CCEEEEcCC-CCCCCHHHHHHhcc----CCEEEecC
Confidence 99999999999999966699999999998 455799999998 999999999 89999999999995 99999999
Q ss_pred CCCCCCCCCHHHHhccccCcEEEecCCCCCcceeCCeeeCccCCcccccchhhhHHHHHhCCcccCHHHHHHHHHHHHcc
Q 007703 448 NPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQ 527 (592)
Q Consensus 448 NPt~~aEct~e~A~~wt~G~aifAsGSPF~pV~~~G~~~~p~Q~NN~yiFPGiglG~~~s~a~~Itd~m~~aAA~aLA~~ 527 (592)
||| +|||||||++||+| +||||| |+++|||+||+|+|||||+|+++++|++|||+|+++||++||++
T Consensus 285 NP~--~E~~p~~a~~~~~~-~i~atG----------rs~~pnQ~NN~~~FPgi~~g~l~~~a~~i~~~m~~aaa~ala~~ 351 (752)
T PRK07232 285 NPD--PEITPEEAKAVRPD-AIIATG----------RSDYPNQVNNVLCFPYIFRGALDVGATTINEEMKLAAVRAIAEL 351 (752)
T ss_pred CCC--ccCCHHHHHHhcCC-EEEEEC----------CcCCCCcccceeecchhhHHHHHcCCccCCHHHHHHHHHHHHhh
Confidence 999 89999999999999 999999 79999999999999999999999999999999999999999999
Q ss_pred cCcc--------------ccCCCcccCCCCCchhhHHHHHHHHHHHHHHcCCCCC
Q 007703 528 VTEE--------------NFEKGLIYPPFSNIRKISANIAANVAAKAYELGVATR 568 (592)
Q Consensus 528 v~~~--------------~~~~g~l~P~~~~ir~vs~~VA~aVa~~A~~~G~a~~ 568 (592)
++++ ++....|+|+.++ ++|+..||.||+++|+++|+|+.
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~iip~~~~-~~~~~~va~av~~~a~~~g~a~~ 405 (752)
T PRK07232 352 AREEVSDEVAAAYGGQKLSFGPEYIIPKPFD-PRLIVKIAPAVAKAAMDSGVATR 405 (752)
T ss_pred cccccchhhhhhhccccccCCCCccCCCCCC-hhHHHHHHHHHHHHHHhhCcccC
Confidence 9986 7888999999888 56999999999999999999985
No 9
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=100.00 E-value=3.6e-99 Score=768.49 Aligned_cols=277 Identities=60% Similarity=0.974 Sum_probs=270.3
Q ss_pred CcchHHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCC
Q 007703 307 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 386 (592)
Q Consensus 307 iQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l 386 (592)
|||||+|+|||+|||+|++|++|+||||||+|||+||+|||+||+.+|++ +|+|+|||+++||++|++|||+++|.+ |
T Consensus 1 IqGTa~V~lAgllnAlk~~g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~-~G~~~eeA~~~i~~vD~~Gll~~~r~~-l 78 (279)
T cd05312 1 IQGTAAVALAGLLAALRITGKPLSDQRILFLGAGSAGIGIADLIVSAMVR-EGLSEEEARKKIWLVDSKGLLTKDRKD-L 78 (279)
T ss_pred CchHHHHHHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHH-cCCChhhccCeEEEEcCCCeEeCCCCc-c
Confidence 89999999999999999999999999999999999999999999999998 599999999999999999999999976 9
Q ss_pred chhchhhccccC--CCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHccCCCCceEEecCCCCCCCCCCHHHHhccc
Q 007703 387 QHFKKPWAHEHE--PVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVKPLILALSNPTSQSECTAEEAYTWS 464 (592)
Q Consensus 387 ~~~k~~fA~~~~--~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~e~rPIIFaLSNPt~~aEct~e~A~~wt 464 (592)
+++|++||++.. +..+|+|+|+.+|||||||+|+++|+||+|+||+|+++|+ |||||||||||+++||||||||+||
T Consensus 79 ~~~~~~~a~~~~~~~~~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~-~PIIFaLSNPt~~~E~~pe~a~~~t 157 (279)
T cd05312 79 TPFKKPFARKDEEKEGKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNE-RPIIFALSNPTSKAECTAEDAYKWT 157 (279)
T ss_pred hHHHHHHHhhcCcccCCCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCC-CCEEEECCCcCCccccCHHHHHHhh
Confidence 999999999766 6689999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred cCcEEEecCCCCCcceeCCeeeCccCCcccccchhhhHHHHHhCCcccCHHHHHHHHHHHHcccCccccCCCcccCCCCC
Q 007703 465 KGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSN 544 (592)
Q Consensus 465 ~G~aifAsGSPF~pV~~~G~~~~p~Q~NN~yiFPGiglG~~~s~a~~Itd~m~~aAA~aLA~~v~~~~~~~g~l~P~~~~ 544 (592)
+|+|||||||||+||+||||+++||||||+|+|||||||+++++|++|||+||++||++||++++++++..+.|||++++
T Consensus 158 ~G~ai~ATGsPf~pv~~~Gr~~~p~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~~~~~~l~~~~l~P~~~~ 237 (279)
T cd05312 158 DGRALFASGSPFPPVEYNGKTYVPGQGNNAYIFPGIGLGAILSGARHITDEMFLAAAEALASLVTDEELARGRLYPPLSN 237 (279)
T ss_pred cCCEEEEeCCCCCCeeeCCeEecCCCcceeeeccchhhHHHHcCCeeCCHHHHHHHHHHHHHhCCccccCCCeeeCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHhCCccC
Q 007703 545 IRKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTP 586 (592)
Q Consensus 545 ir~vs~~VA~aVa~~A~~~G~a~~~~~p~d~~~~i~~~m~~P 586 (592)
+|+||..||.+|+++|+++|+|+..++|+|+++||++.||+|
T Consensus 238 ~r~vs~~VA~aVa~~A~~~gla~~~~~~~~~~~~i~~~~w~P 279 (279)
T cd05312 238 IREISAQIAVAVAKYAYEEGLATRYPPPEDLEEYVKSQMWEP 279 (279)
T ss_pred HhHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHhCccCC
Confidence 999999999999999999999987677789999999999998
No 10
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=100.00 E-value=5.4e-96 Score=737.21 Aligned_cols=252 Identities=54% Similarity=0.898 Sum_probs=229.9
Q ss_pred CcchHHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCC
Q 007703 307 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 386 (592)
Q Consensus 307 iQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l 386 (592)
|||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+.+|+++ |+|++|||+||||||++|||+++|. +|
T Consensus 1 iqGTaaV~lAgll~Al~~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~-G~~~~eA~~~i~lvD~~Gll~~~r~-~l 78 (255)
T PF03949_consen 1 IQGTAAVVLAGLLNALRVTGKKLSDQRIVFFGAGSAGIGIARLLVAAMVRE-GLSEEEARKRIWLVDSKGLLTDDRE-DL 78 (255)
T ss_dssp CHHHHHHHHHHHHHHHHHHTS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCT-TS-HHHHHTTEEEEETTEEEBTTTS-SH
T ss_pred CchhHHHHHHHHHHHHHHhCCCHHHcEEEEeCCChhHHHHHHHHHHHHHHh-cCCHHHHhccEEEEeccceEeccCc-cC
Confidence 799999999999999999999999999999999999999999999999986 9999999999999999999999995 59
Q ss_pred chhchhhccccCCC---CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHccCCCCceEEecCCCCCCCCCCHHHHhcc
Q 007703 387 QHFKKPWAHEHEPV---NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVKPLILALSNPTSQSECTAEEAYTW 463 (592)
Q Consensus 387 ~~~k~~fA~~~~~~---~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~e~rPIIFaLSNPt~~aEct~e~A~~w 463 (592)
+++|++|||+..+. .+|+|+|+.+|||||||+|+++|+||||+||+|+++|| |||||||||||+++||||||||+|
T Consensus 79 ~~~~~~~a~~~~~~~~~~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~e-rPIIF~LSNPt~~aE~~peda~~~ 157 (255)
T PF03949_consen 79 NPHKKPFARKTNPEKDWGSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNE-RPIIFPLSNPTPKAECTPEDAYEW 157 (255)
T ss_dssp SHHHHHHHBSSSTTT--SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSS-SEEEEE-SSSCGGSSS-HHHHHHT
T ss_pred ChhhhhhhccCcccccccCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCC-CCEEEECCCCCCcccCCHHHHHhh
Confidence 99999999987665 49999999999999999999999999999999999999 999999999999999999999999
Q ss_pred ccCcEEEecCCCCCcceeCCeeeCccCCcccccchhhhHHHHHhCCcccCHHHHHHHHHHHHcccCccccCCCcccCCCC
Q 007703 464 SKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFS 543 (592)
Q Consensus 464 t~G~aifAsGSPF~pV~~~G~~~~p~Q~NN~yiFPGiglG~~~s~a~~Itd~m~~aAA~aLA~~v~~~~~~~g~l~P~~~ 543 (592)
|+|+|||||||||+||+|+||+++||||||+|||||||||+++++|++|||+||++||++||++++++++..|.|||+++
T Consensus 158 t~g~ai~AtGSpf~pv~~~Gr~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aAA~aLA~~v~~~~~~~~~l~P~~~ 237 (255)
T PF03949_consen 158 TDGRAIFATGSPFPPVEYNGRSDYPNQCNNSYIFPGIGLGALDSRARRITDEMFLAAAEALADLVSEEELAPGRLYPPLF 237 (255)
T ss_dssp TTSEEEEEESS----EEETSCEESSCE-SGGGTHHHHHHHHHHCTBSS--HHHHHHHHHHHHHTSSHHHHHTTBSS-SGG
T ss_pred CCceEEEecCCccCCeeeCCeEEecCCCCeeEeeccceeeeeecCCeecCHHHHHHHHHHHHHhCCcccCCCCcccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhHHHHHHHHHHHHH
Q 007703 544 NIRKISANIAANVAAKAY 561 (592)
Q Consensus 544 ~ir~vs~~VA~aVa~~A~ 561 (592)
++|+||.+||.+|+++||
T Consensus 238 ~ir~vs~~VA~aVa~~Ai 255 (255)
T PF03949_consen 238 DIREVSARVAAAVAKQAI 255 (255)
T ss_dssp GHHHHHHHHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHHHhC
Confidence 999999999999999996
No 11
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=100.00 E-value=4.2e-93 Score=715.54 Aligned_cols=251 Identities=51% Similarity=0.775 Sum_probs=245.5
Q ss_pred CcchHHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCC
Q 007703 307 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 386 (592)
Q Consensus 307 iQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l 386 (592)
|||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+++|++ +|+|+||||++||+||++|||+++|.+ |
T Consensus 1 iqGTaaV~lAgllnAlk~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~-~Gls~e~A~~~i~~vD~~Gll~~~r~~-l 78 (254)
T cd00762 1 IQGTASVAVAGLLAALKVTKKKISEHKVLFNGAGAAALGIANLIVXLXVK-EGISKEEACKRIWXVDRKGLLVKNRKE-T 78 (254)
T ss_pred CchhHHHHHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHh-cCCCHHHHhccEEEECCCCeEeCCCCc-c
Confidence 79999999999999999999999999999999999999999999999997 499999999999999999999999975 8
Q ss_pred chhchh---hccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHccCCCCceEEecCCCCCCCCCCHHHHhcc
Q 007703 387 QHFKKP---WAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVKPLILALSNPTSQSECTAEEAYTW 463 (592)
Q Consensus 387 ~~~k~~---fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~e~rPIIFaLSNPt~~aEct~e~A~~w 463 (592)
.++|++ |+++..+..+|+|+|+.+|||||||+|+++|+||+|+||+|+++|+ |||||||||||+++||||||||+|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~-~PIIFaLSNPt~~aE~tpe~a~~~ 157 (254)
T cd00762 79 CPNEYHLARFANPERESGDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINE-RPVIFALSNPTSKAECTAEEAYTA 157 (254)
T ss_pred CHHHHHHHHHcCcccccCCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCC-CCEEEECCCcCCccccCHHHHHhh
Confidence 999999 8888777889999999999999999999999999999999999999 999999999999999999999999
Q ss_pred ccCcEEEecCCCCCcceeCCeeeCccCCcccccchhhhHHHHHhCCcccCHHHHHHHHHHHHcccCccccCCCcccCCCC
Q 007703 464 SKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFS 543 (592)
Q Consensus 464 t~G~aifAsGSPF~pV~~~G~~~~p~Q~NN~yiFPGiglG~~~s~a~~Itd~m~~aAA~aLA~~v~~~~~~~g~l~P~~~ 543 (592)
|+|||||||||||+||+||||+|+|+||||+|||||||||+++++|++|||+||++||++||++++++++..+.|||+++
T Consensus 158 t~G~ai~AtGspf~pv~~~g~~~~~~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~v~~~~l~~~~i~P~~~ 237 (254)
T cd00762 158 TEGRAIFASGSPFHPVELNGGTYKPGQGNNLYIFPGVALGVILCRIRHITDDVFLSAAEAIASSVTEESLKPGRLYPPLF 237 (254)
T ss_pred cCCCEEEEECCCCCCcccCCceeecccccceeeccchhhhhHhhcCeECCHHHHHHHHHHHHhhCChhcCCCCceeCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhHHHHHHHHHHHH
Q 007703 544 NIRKISANIAANVAAKA 560 (592)
Q Consensus 544 ~ir~vs~~VA~aVa~~A 560 (592)
+||+||.+||.+|+++|
T Consensus 238 ~ir~vs~~VA~aVa~~a 254 (254)
T cd00762 238 DIQEVSLNIAVAVAKYA 254 (254)
T ss_pred hhhhHHHHHHHHHHHhC
Confidence 99999999999999875
No 12
>PF00390 malic: Malic enzyme, N-terminal domain; InterPro: IPR012301 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 2HAE_B 1VL6_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A ....
Probab=100.00 E-value=2.5e-84 Score=623.45 Aligned_cols=182 Identities=65% Similarity=1.207 Sum_probs=164.3
Q ss_pred hhhhhhhhHHHhhhcccccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecCceecc
Q 007703 116 EERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILG 195 (592)
Q Consensus 116 ~~~Ne~Lfy~ll~~~~ee~lPivYTPtVG~ac~~~s~i~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILG 195 (592)
|++||+|||++|.+|++|+||||||||||+|||+||++|++|+|+|+|++|+|+|.++|+|||.++|++|||||||||||
T Consensus 1 q~~n~~Lfy~~l~~~~~e~lpivYTPtVg~ac~~~s~~~~~~~Gly~s~~d~g~i~~~l~n~~~~~v~v~VVTDG~rILG 80 (182)
T PF00390_consen 1 QDRNETLFYRLLSSHLEEMLPIVYTPTVGEACQNYSHLFRRPRGLYLSISDRGHIEEILRNWPERDVRVIVVTDGERILG 80 (182)
T ss_dssp HTTEHHHHHHHHHHTHHHHHHHHSTTCHHHHHHHHHHHGGCHHSCCCEGGGETCHHHHHTTSS-SS--EEEEE-SSSBTT
T ss_pred CCccEEEEEeehhhChHhhCceecCchHHHHHHHHHHhhccccceEEecCChHHHHHHHHhhhccCceEEEEeCchhhcc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCccccchhhHHHHHHhcCCCCCceeeEEeecCCCchhcccCcccccccccCCChhhhHHHHHHHHHHHHHhcCC
Q 007703 196 LGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGE 275 (592)
Q Consensus 196 LGDlG~~GmgI~iGKl~LYta~gGI~P~~~LPI~LDvGTnNe~LL~Dp~YlG~r~~R~~geeY~~~idefv~av~~~fGp 275 (592)
|||||++|||||+||++|||+||||||++|||||||||||||+||+||+|+|+||+|++|++|++||||||+||+++|||
T Consensus 81 lGD~G~~Gm~I~~GKl~ly~~~gGI~P~~~lPv~LDvGTnn~~ll~Dp~Y~G~r~~R~~g~~y~~fvdefv~av~~~~gp 160 (182)
T PF00390_consen 81 LGDLGVNGMGIPIGKLALYTACGGIDPSRCLPVCLDVGTNNEELLNDPLYLGLRHPRVRGEEYDEFVDEFVEAVKRRFGP 160 (182)
T ss_dssp TBS-GGGGHHHHHHHHHHHHHHHS-EGGGEEEEEEESBBS-HHHHH-TT--S-SSB---THHHHHHHHHHHHHHHHHHGC
T ss_pred ccCcCcceEEeeehhhhhHHhhcCcCcccccCeEeecCcchhhhccCcchhccccCCCChhhhhhCHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeeeeecCCCchHHHHHHHHc
Q 007703 276 KVLIQFEDFANHNAFELLAKYG 297 (592)
Q Consensus 276 ~~lIqfEDf~~~~Af~lL~ryr 297 (592)
+++||||||+++|||++|+|||
T Consensus 161 ~~~IqfEDf~~~nAf~iL~kYr 182 (182)
T PF00390_consen 161 NALIQFEDFSNPNAFRILDKYR 182 (182)
T ss_dssp TSEEEE-S--CCHHHHHHHHHT
T ss_pred CeEEEEecCCChhHHHHHHhcC
Confidence 9999999999999999999997
No 13
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=100.00 E-value=2.3e-58 Score=456.94 Aligned_cols=223 Identities=38% Similarity=0.518 Sum_probs=207.4
Q ss_pred CcchHHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCC
Q 007703 307 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 386 (592)
Q Consensus 307 iQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l 386 (592)
+||||+|++||+++|++..|.+++|+||||+|||+||.|||++|.. .|++ +++||++|++||++.+|.++|
T Consensus 1 ~qgt~~v~lAG~~~al~~~g~~l~~~rvlvlGAGgAg~aiA~~L~~-----~G~~----~~~i~ivdr~gl~~~~r~~~L 71 (226)
T cd05311 1 QHGTAIVTLAGLLNALKLVGKKIEEVKIVINGAGAAGIAIARLLLA-----AGAK----PENIVVVDSKGVIYEGREDDL 71 (226)
T ss_pred CCchHHHHHHHHHHHHHHhCCCccCCEEEEECchHHHHHHHHHHHH-----cCcC----cceEEEEeCCCccccccchhh
Confidence 6999999999999999999999999999999999999999999975 3886 679999999999999997679
Q ss_pred chhchhhcccc--CCC-CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHccCCCCceEEecCCCCCCCCCCHHHHhcc
Q 007703 387 QHFKKPWAHEH--EPV-NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVKPLILALSNPTSQSECTAEEAYTW 463 (592)
Q Consensus 387 ~~~k~~fA~~~--~~~-~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~e~rPIIFaLSNPt~~aEct~e~A~~w 463 (592)
.++|++|+++. .+. .+|.|+++. ||+|||+|+ +|+||+++++.|+ + +||||+||||+ +||++++|++|
T Consensus 72 ~~~~~~la~~~~~~~~~~~l~~~l~~--~dvlIgaT~-~G~~~~~~l~~m~---~-~~ivf~lsnP~--~e~~~~~A~~~ 142 (226)
T cd05311 72 NPDKNEIAKETNPEKTGGTLKEALKG--ADVFIGVSR-PGVVKKEMIKKMA---K-DPIVFALANPV--PEIWPEEAKEA 142 (226)
T ss_pred hHHHHHHHHHhccCcccCCHHHHHhc--CCEEEeCCC-CCCCCHHHHHhhC---C-CCEEEEeCCCC--CcCCHHHHHHc
Confidence 99999999864 222 378899976 999999999 8899999999998 4 99999999999 89999999999
Q ss_pred ccCcEEEecCCCCCcceeCCeeeCccCCcccccchhhhHHHHHhCCcccCHHHHHHHHHHHHcccCccccCCCcccCCCC
Q 007703 464 SKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFS 543 (592)
Q Consensus 464 t~G~aifAsGSPF~pV~~~G~~~~p~Q~NN~yiFPGiglG~~~s~a~~Itd~m~~aAA~aLA~~v~~~~~~~g~l~P~~~ 543 (592)
|..||+|| +++.|+|+||+|||||||||++++++++|||+||++||++||++++++++..|.|||+++
T Consensus 143 --ga~i~a~G----------~~~~~~Q~nn~~~fPg~~~g~~~~~~~~i~~~m~~~aa~~la~~~~~~~~~~~~~~P~~~ 210 (226)
T cd05311 143 --GADIVATG----------RSDFPNQVNNVLGFPGIFRGALDVRATKITEEMKLAAAEAIADLAEEEVLGEEYIIPTPF 210 (226)
T ss_pred --CCcEEEeC----------CCCCccccceeeecchhhHHHHHcCCcCCCHHHHHHHHHHHHhhCCccccCCCcccCCCC
Confidence 55599999 789999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhHHHHHHHHHHHH
Q 007703 544 NIRKISANIAANVAAKA 560 (592)
Q Consensus 544 ~ir~vs~~VA~aVa~~A 560 (592)
+ |+||..||.+|+++|
T Consensus 211 ~-~~~~~~va~~v~~~a 226 (226)
T cd05311 211 D-PRVVPRVATAVAKAA 226 (226)
T ss_pred c-hhHHHHHHHHHHHhC
Confidence 9 999999999999875
No 14
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=98.82 E-value=4.6e-08 Score=83.42 Aligned_cols=86 Identities=37% Similarity=0.492 Sum_probs=75.8
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCch
Q 007703 309 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 388 (592)
Q Consensus 309 GTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~ 388 (592)
+||.++++++..+.+..+.+++..+++|+|+|.+|.+++..+.+. | -++++++|+
T Consensus 1 ~t~~~~~~~l~~~~~~~~~~~~~~~v~i~G~G~~g~~~a~~l~~~-----~------~~~v~v~~r-------------- 55 (86)
T cd05191 1 ATAAGAVALLKAAGKVTNKSLKGKTVVVLGAGEVGKGIAKLLADE-----G------GKKVVLCDR-------------- 55 (86)
T ss_pred ChhHHHHHHHHHHHHHhCCCCCCCEEEEECCCHHHHHHHHHHHHc-----C------CCEEEEEcC--------------
Confidence 699999999999999999999999999999999999999988763 3 267999988
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHccCCCCceEEecC
Q 007703 389 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVKPLILALS 447 (592)
Q Consensus 389 ~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~e~rPIIFaLS 447 (592)
|+||++++.++.|.++ .|+..++ .|+||.++
T Consensus 56 ------------------------di~i~~~~~~~~~~~~---~~~~~~~-~~~v~~~a 86 (86)
T cd05191 56 ------------------------DILVTATPAGVPVLEE---ATAKINE-GAVVIDLA 86 (86)
T ss_pred ------------------------CEEEEcCCCCCCchHH---HHHhcCC-CCEEEecC
Confidence 9999999999999888 5555567 99999875
No 15
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=97.72 E-value=0.0026 Score=69.90 Aligned_cols=159 Identities=18% Similarity=0.246 Sum_probs=104.3
Q ss_pred CCChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCCchHHHH---------------------HHHHc-------CCCcee
Q 007703 252 RATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFEL---------------------LAKYG-------TTHLVF 303 (592)
Q Consensus 252 R~~geeY~~~idefv~av~~~fGp~~lIqfEDf~~~~Af~l---------------------L~ryr-------~~~~~F 303 (592)
..+-+||...+++.+ ..+.|+.+| |.+..-...+ ..||+ ..+|+|
T Consensus 105 ~~~~~ey~~~~~~~l----~~~~p~iii---DdGgdl~~~~~~~~~~~~~~i~G~~EeTttGv~rl~~~~~~~~l~~Pv~ 177 (425)
T PRK05476 105 GETLEEYWECIERAL----DGHGPNMIL---DDGGDLTLLVHTERPELLANIKGVTEETTTGVHRLYAMAKDGALKFPAI 177 (425)
T ss_pred CCCHHHHHHHHHHHh----cCCCCCEEE---ecccHHHHHHHHHhhHhHhccEeeeecchHHHHHHHHHHHcCCCCCCEE
Confidence 345678888777766 345566655 4444433322 13443 369999
Q ss_pred c----------cCCcchHHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEc
Q 007703 304 N----------DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVD 373 (592)
Q Consensus 304 N----------DDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD 373 (592)
| |...||+--++-|+.. .++..+.+.+++|+|+|..|.++|..+.. .|. +++++|
T Consensus 178 ~vn~s~~K~~~dn~~gt~~s~~~ai~r---at~~~l~Gk~VlViG~G~IG~~vA~~lr~-----~Ga-------~ViV~d 242 (425)
T PRK05476 178 NVNDSVTKSKFDNRYGTGESLLDGIKR---ATNVLIAGKVVVVAGYGDVGKGCAQRLRG-----LGA-------RVIVTE 242 (425)
T ss_pred ecCCcccCccccccHHHHhhhHHHHHH---hccCCCCCCEEEEECCCHHHHHHHHHHHh-----CCC-------EEEEEc
Confidence 8 6678888777666653 44677899999999999999999988864 253 588888
Q ss_pred cCCcccCCCccCCchhchhhcc-ccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHccCCCCceEEecCCCC
Q 007703 374 SKGLIVSSRKDSLQHFKKPWAH-EHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVKPLILALSNPT 450 (592)
Q Consensus 374 ~~GLv~~~R~~~l~~~k~~fA~-~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~e~rPIIFaLSNPt 450 (592)
.+- .| ...|+ ..-...++.++++. .|++|-+++..++|+.+.++.|.. .-|++-.+.+.
T Consensus 243 ~dp----~r--------a~~A~~~G~~v~~l~eal~~--aDVVI~aTG~~~vI~~~~~~~mK~----GailiNvG~~d 302 (425)
T PRK05476 243 VDP----IC--------ALQAAMDGFRVMTMEEAAEL--GDIFVTATGNKDVITAEHMEAMKD----GAILANIGHFD 302 (425)
T ss_pred CCc----hh--------hHHHHhcCCEecCHHHHHhC--CCEEEECCCCHHHHHHHHHhcCCC----CCEEEEcCCCC
Confidence 641 11 11111 11123468888874 899999888777888888888864 34555444443
No 16
>PRK09414 glutamate dehydrogenase; Provisional
Probab=97.18 E-value=0.018 Score=63.87 Aligned_cols=189 Identities=16% Similarity=0.160 Sum_probs=130.5
Q ss_pred CChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCCchHHH--HHHHHcCC---C-------cee----ccCCcchHHHHHH
Q 007703 253 ATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFE--LLAKYGTT---H-------LVF----NDDIQGTASVVLA 316 (592)
Q Consensus 253 ~~geeY~~~idefv~av~~~fGp~~lIqfEDf~~~~Af~--lL~ryr~~---~-------~~F----NDDiQGTaaV~LA 316 (592)
.+..|-..|...|+.++.+.+||..=|-=+|++..-.-. +.+.|+.- . ++. .+-...||-=+..
T Consensus 138 ~s~~Eler~~r~~~~~l~~~iG~~~DipapDvgt~~~~M~~~~d~y~~~~~~~~g~vtGkp~~~gGs~gr~~aTg~Gv~~ 217 (445)
T PRK09414 138 KSDAEIMRFCQSFMTELYRHIGPDTDVPAGDIGVGGREIGYLFGQYKRLTNRFEGVLTGKGLSFGGSLIRTEATGYGLVY 217 (445)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCcCccccCCCHHHHHHHHHHHHhhcCcceEEEecCCcccCCCCCCCCcccHHHHH
Confidence 455688889999999999999998888888887432222 66777632 1 111 1233467777888
Q ss_pred HHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEE-ccCCcccCCCccCCchh-----c
Q 007703 317 GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLV-DSKGLIVSSRKDSLQHF-----K 390 (592)
Q Consensus 317 gll~Alr~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lv-D~~GLv~~~R~~~l~~~-----k 390 (592)
++..+++..|.+|++.||+|.|-|..|...|++|.. .|. +++-+ |++|-|+...+ |+.. |
T Consensus 218 ~~~~~~~~~~~~l~g~rVaIqGfGnVG~~~A~~L~~-----~Ga-------kVVavsDs~G~iyn~~G--LD~~~L~~~k 283 (445)
T PRK09414 218 FAEEMLKARGDSFEGKRVVVSGSGNVAIYAIEKAQQ-----LGA-------KVVTCSDSSGYVYDEEG--IDLEKLKEIK 283 (445)
T ss_pred HHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHH-----CCC-------EEEEEEcCCceEECCCC--CCHHHHHHHH
Confidence 889999999999999999999999999999999854 363 55555 99999998753 4332 1
Q ss_pred h-------hhccc-cCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHccCCCCceEEecCC-CCCCCCCCHHHHh
Q 007703 391 K-------PWAHE-HEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVKPLILALSN-PTSQSECTAEEAY 461 (592)
Q Consensus 391 ~-------~fA~~-~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~e~rPIIFaLSN-Pt~~aEct~e~A~ 461 (592)
. .|... ....-+- +.+-.++.||||=+.. ++..|++-...+-. +. -.||.=-+| |+ -+| +++++
T Consensus 284 ~~~~~~l~~~~~~~~~~~i~~-~~i~~~d~DVliPaAl-~n~It~~~a~~i~~-~~-akiIvEgAN~p~-t~~--A~~~L 356 (445)
T PRK09414 284 EVRRGRISEYAEEFGAEYLEG-GSPWSVPCDIALPCAT-QNELDEEDAKTLIA-NG-VKAVAEGANMPS-TPE--AIEVF 356 (445)
T ss_pred HhcCCchhhhhhhcCCeecCC-ccccccCCcEEEecCC-cCcCCHHHHHHHHH-cC-CeEEEcCCCCCC-CHH--HHHHH
Confidence 1 11110 0001122 2344568999996665 78999999999853 34 678888888 76 234 44555
Q ss_pred c
Q 007703 462 T 462 (592)
Q Consensus 462 ~ 462 (592)
.
T Consensus 357 ~ 357 (445)
T PRK09414 357 L 357 (445)
T ss_pred H
Confidence 4
No 17
>PLN02477 glutamate dehydrogenase
Probab=97.10 E-value=0.014 Score=64.07 Aligned_cols=186 Identities=22% Similarity=0.241 Sum_probs=127.6
Q ss_pred CChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCCchHHH--HHHHHcC----CCcee----------ccCCcchHHHHHH
Q 007703 253 ATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFE--LLAKYGT----THLVF----------NDDIQGTASVVLA 316 (592)
Q Consensus 253 ~~geeY~~~idefv~av~~~fGp~~lIqfEDf~~~~Af~--lL~ryr~----~~~~F----------NDDiQGTaaV~LA 316 (592)
.+..|-..|...|+.++.+.-||..=|-=+|.+..-.-. +.++|+. .-.|+ .+--.-||-=+..
T Consensus 112 ~s~~e~e~l~r~f~~~l~~~iG~~~DipapDvgt~~~~M~w~~d~y~~~~g~~~~~vtGkp~~~gGs~~r~~aTg~Gv~~ 191 (410)
T PLN02477 112 LSESELERLTRVFTQKIHDLIGIHTDVPAPDMGTNAQTMAWILDEYSKFHGFSPAVVTGKPIDLGGSLGREAATGRGVVF 191 (410)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCHHHHHHHHHHHHHhhCCCCceEeCCCcccCCCCCCCccchHHHHH
Confidence 456788889999999999999996556667776542211 5667753 11111 2233458888888
Q ss_pred HHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEE-EEccCCcccCCCccCCchhch-hhc
Q 007703 317 GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKIC-LVDSKGLIVSSRKDSLQHFKK-PWA 394 (592)
Q Consensus 317 gll~Alr~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~-lvD~~GLv~~~R~~~l~~~k~-~fA 394 (592)
++-.+++..|.+|++.||+|.|-|..|.+.|++|.+ .|. ++. +.|++|-|+...+ |+.... .+.
T Consensus 192 ~~~~~~~~~g~~l~g~~VaIqGfGnVG~~~A~~L~e-----~Ga-------kVVaVsD~~G~iy~~~G--LD~~~L~~~k 257 (410)
T PLN02477 192 ATEALLAEHGKSIAGQTFVIQGFGNVGSWAAQLIHE-----KGG-------KIVAVSDITGAVKNENG--LDIPALRKHV 257 (410)
T ss_pred HHHHHHHHcCCCccCCEEEEECCCHHHHHHHHHHHH-----cCC-------EEEEEECCCCeEECCCC--CCHHHHHHHH
Confidence 889999999999999999999999999999998865 363 566 8999999998753 543221 111
Q ss_pred ccc------CC--CCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHccCCCCceEEecCC-CCCCCCCCHHHHhc
Q 007703 395 HEH------EP--VNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVKPLILALSN-PTSQSECTAEEAYT 462 (592)
Q Consensus 395 ~~~------~~--~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~e~rPIIFaLSN-Pt~~aEct~e~A~~ 462 (592)
+.. +. .-+-.+.+. .+.||||=+. .++..|++.+..+. -.||.--+| |+ .+| +++.++
T Consensus 258 ~~~g~l~~~~~a~~i~~~e~l~-~~~DvliP~A-l~~~I~~~na~~i~-----ak~I~egAN~p~-t~e--a~~~L~ 324 (410)
T PLN02477 258 AEGGGLKGFPGGDPIDPDDILV-EPCDVLIPAA-LGGVINKENAADVK-----AKFIVEAANHPT-DPE--ADEILR 324 (410)
T ss_pred HhcCchhccccceEecCcccee-ccccEEeecc-ccccCCHhHHHHcC-----CcEEEeCCCCCC-CHH--HHHHHH
Confidence 110 00 012233343 4899999655 47799999998863 789999998 66 344 455554
No 18
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.08 E-value=0.0022 Score=69.88 Aligned_cols=121 Identities=25% Similarity=0.369 Sum_probs=81.3
Q ss_pred cchHHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCc
Q 007703 308 QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (592)
Q Consensus 308 QGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~ 387 (592)
.+.-++..+++--|.+..| ++.+.+++|+|+|..|..++..+.. .|. .+++++|+.. .| ..
T Consensus 158 ~~~vSv~~~Av~la~~~~~-~l~~~~VlViGaG~iG~~~a~~L~~-----~G~------~~V~v~~rs~----~r---a~ 218 (417)
T TIGR01035 158 AGAVSISSAAVELAERIFG-SLKGKKALLIGAGEMGELVAKHLLR-----KGV------GKILIANRTY----ER---AE 218 (417)
T ss_pred CCCcCHHHHHHHHHHHHhC-CccCCEEEEECChHHHHHHHHHHHH-----CCC------CEEEEEeCCH----HH---HH
Confidence 5566777777666666654 4889999999999999999888754 264 5788888741 11 11
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCC-CCCCHHHHHHHHccCCCCc-eEEecCCCC
Q 007703 388 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVG-RTFTKEVIEAMASFNEVKP-LILALSNPT 450 (592)
Q Consensus 388 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~-g~Ft~evv~~Ma~~~e~rP-IIFaLSNPt 450 (592)
...+.+....-+..++.+++.. .|++|-+++.+ ..++++.++.+..... +| +|+-+++|-
T Consensus 219 ~la~~~g~~~i~~~~l~~~l~~--aDvVi~aT~s~~~ii~~e~l~~~~~~~~-~~~~viDla~Pr 280 (417)
T TIGR01035 219 DLAKELGGEAVKFEDLEEYLAE--ADIVISSTGAPHPIVSKEDVERALRERT-RPLFIIDIAVPR 280 (417)
T ss_pred HHHHHcCCeEeeHHHHHHHHhh--CCEEEECCCCCCceEcHHHHHHHHhcCC-CCeEEEEeCCCC
Confidence 1111111111112367778875 89999887644 4789999998754334 56 889999997
No 19
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.03 E-value=0.0094 Score=65.43 Aligned_cols=129 Identities=18% Similarity=0.227 Sum_probs=93.6
Q ss_pred CCceec----------cCCcchHHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCc
Q 007703 299 THLVFN----------DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 368 (592)
Q Consensus 299 ~~~~FN----------DDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~ 368 (592)
.+|+|+ |.-.||+--++-+++ |.++..+.+.+++|+|+|..|.++|..+.. .|. +
T Consensus 163 ~~Pv~~vnds~~K~~~dn~~g~g~s~~~~i~---r~t~~~l~GktVvViG~G~IG~~va~~ak~-----~Ga-------~ 227 (413)
T cd00401 163 KFPAINVNDSVTKSKFDNLYGCRESLIDGIK---RATDVMIAGKVAVVAGYGDVGKGCAQSLRG-----QGA-------R 227 (413)
T ss_pred CCCEEEecchhhcccccccchhchhhHHHHH---HhcCCCCCCCEEEEECCCHHHHHHHHHHHH-----CCC-------E
Confidence 778875 667899998887776 566788999999999999999999987754 363 4
Q ss_pred EEEEccCCcccCCCccCCchhchhhccc-cCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHccCCCCceEEecC
Q 007703 369 ICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVKPLILALS 447 (592)
Q Consensus 369 i~lvD~~GLv~~~R~~~l~~~k~~fA~~-~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~e~rPIIFaLS 447 (592)
++++|.+ +.+...|+. +-...++.|+++. .|++|-+++..++|+++.++.|.. .-+|.-.+
T Consensus 228 ViV~d~d------------~~R~~~A~~~G~~~~~~~e~v~~--aDVVI~atG~~~~i~~~~l~~mk~----GgilvnvG 289 (413)
T cd00401 228 VIVTEVD------------PICALQAAMEGYEVMTMEEAVKE--GDIFVTTTGNKDIITGEHFEQMKD----GAIVCNIG 289 (413)
T ss_pred EEEEECC------------hhhHHHHHhcCCEEccHHHHHcC--CCEEEECCCCHHHHHHHHHhcCCC----CcEEEEeC
Confidence 7777763 222333332 1112346788865 799999998888888888888875 55676677
Q ss_pred CCCCCCCCCHHHHhc
Q 007703 448 NPTSQSECTAEEAYT 462 (592)
Q Consensus 448 NPt~~aEct~e~A~~ 462 (592)
.+. .|+...+...
T Consensus 290 ~~~--~eId~~~L~~ 302 (413)
T cd00401 290 HFD--VEIDVKGLKE 302 (413)
T ss_pred CCC--CccCHHHHHh
Confidence 663 6888877654
No 20
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=96.94 E-value=0.012 Score=64.50 Aligned_cols=127 Identities=20% Similarity=0.238 Sum_probs=86.5
Q ss_pred CCceec----------cCCcchHHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCc
Q 007703 299 THLVFN----------DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 368 (592)
Q Consensus 299 ~~~~FN----------DDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~ 368 (592)
.+|+|| |.-.||+--++-+++ |.++..+.+.+++|+|.|..|.++|..+.. .|. +
T Consensus 156 ~~Pvi~vnds~~K~~fDn~yg~g~s~~~~i~---r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~-----~Ga-------~ 220 (406)
T TIGR00936 156 KFPAINVNDAYTKSLFDNRYGTGQSTIDGIL---RATNLLIAGKTVVVAGYGWCGKGIAMRARG-----MGA-------R 220 (406)
T ss_pred CCcEEEecchhhchhhhcccccchhHHHHHH---HhcCCCCCcCEEEEECCCHHHHHHHHHHhh-----CcC-------E
Confidence 788886 667899977766655 566778999999999999999999997753 253 5
Q ss_pred EEEEccCCcccCCCccCCchhchhhcc-ccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHccCCCCceEEecC
Q 007703 369 ICLVDSKGLIVSSRKDSLQHFKKPWAH-EHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVKPLILALS 447 (592)
Q Consensus 369 i~lvD~~GLv~~~R~~~l~~~k~~fA~-~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~e~rPIIFaLS 447 (592)
++++|.+- .| ...|+ +.-...++.|+++. .|++|-+++..++++.+.+..|.. .-||.-.+
T Consensus 221 ViV~d~dp----~r--------~~~A~~~G~~v~~leeal~~--aDVVItaTG~~~vI~~~~~~~mK~----GailiN~G 282 (406)
T TIGR00936 221 VIVTEVDP----IR--------ALEAAMDGFRVMTMEEAAKI--GDIFITATGNKDVIRGEHFENMKD----GAIVANIG 282 (406)
T ss_pred EEEEeCCh----hh--------HHHHHhcCCEeCCHHHHHhc--CCEEEECCCCHHHHHHHHHhcCCC----CcEEEEEC
Confidence 88887641 11 11111 11122357788864 799998887777788877777764 55666666
Q ss_pred CCCCCCCCCHHHH
Q 007703 448 NPTSQSECTAEEA 460 (592)
Q Consensus 448 NPt~~aEct~e~A 460 (592)
-.. .|+.-++.
T Consensus 283 ~~~--~eId~~aL 293 (406)
T TIGR00936 283 HFD--VEIDVKAL 293 (406)
T ss_pred CCC--ceeCHHHH
Confidence 654 45554443
No 21
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=96.93 E-value=0.011 Score=59.55 Aligned_cols=130 Identities=21% Similarity=0.232 Sum_probs=92.1
Q ss_pred hHHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchh
Q 007703 310 TASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (592)
Q Consensus 310 TaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~ 389 (592)
||-=+..++-.+++..+.+|++.||+|.|-|..|.++|++|.+. |. +-+.+.|++|-++.. + |+..
T Consensus 2 Tg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~~~-----G~------~vV~vsD~~g~i~~~-G--ld~~ 67 (217)
T cd05211 2 TGYGVVVAMKAAMKHLGDSLEGLTVAVQGLGNVGWGLAKKLAEE-----GG------KVLAVSDPDGYIYDP-G--ITTE 67 (217)
T ss_pred chhHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHc-----CC------EEEEEEcCCCcEECC-C--CCHH
Confidence 45556677788889999999999999999999999999999763 53 678899999988876 4 4332
Q ss_pred -chhhccccCCCCC-------HHHHhcccCCcEEEeccCCCCCCCHHHHHHHHccCCCCceEEecCC-CCCCCCCCHHHH
Q 007703 390 -KKPWAHEHEPVNN-------LLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVKPLILALSN-PTSQSECTAEEA 460 (592)
Q Consensus 390 -k~~fA~~~~~~~~-------L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~e~rPIIFaLSN-Pt~~aEct~e~A 460 (592)
...+.++...... =.+.+..++.||||=++. ++..|++..+.+. -++|..-+| |++. .+++.
T Consensus 68 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~DVlipaA~-~~~i~~~~a~~l~-----a~~V~e~AN~p~t~---~a~~~ 138 (217)
T cd05211 68 ELINYAVALGGSARVKVQDYFPGEAILGLDVDIFAPCAL-GNVIDLENAKKLK-----AKVVAEGANNPTTD---EALRI 138 (217)
T ss_pred HHHHHHHhhCCccccCcccccCcccceeccccEEeeccc-cCccChhhHhhcC-----ccEEEeCCCCCCCH---HHHHH
Confidence 1222221111100 013444568899997776 6699999999885 678888887 8842 45666
Q ss_pred hc
Q 007703 461 YT 462 (592)
Q Consensus 461 ~~ 462 (592)
++
T Consensus 139 L~ 140 (217)
T cd05211 139 LH 140 (217)
T ss_pred HH
Confidence 64
No 22
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=96.92 E-value=0.0049 Score=64.54 Aligned_cols=138 Identities=22% Similarity=0.347 Sum_probs=85.7
Q ss_pred chHHHHHHHHcCCCceeccCCcchHHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhc
Q 007703 287 HNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETR 366 (592)
Q Consensus 287 ~~Af~lL~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~ 366 (592)
.+||++=++.|.+.-+. .+-.+|+.+++-.|....|. +.+.+|+|+|+|..|..++..+.. .|.
T Consensus 139 ~~a~~~~k~vr~et~i~----~~~~sv~~~Av~~a~~~~~~-l~~~~V~ViGaG~iG~~~a~~L~~-----~g~------ 202 (311)
T cd05213 139 QKAIKVGKRVRTETGIS----RGAVSISSAAVELAEKIFGN-LKGKKVLVIGAGEMGELAAKHLAA-----KGV------ 202 (311)
T ss_pred HHHHHHHHHHhhhcCCC----CCCcCHHHHHHHHHHHHhCC-ccCCEEEEECcHHHHHHHHHHHHH-----cCC------
Confidence 46777777777654444 34456666665555555554 889999999999999988887754 243
Q ss_pred CcEEEEccCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHH-ccCCCCceEEe
Q 007703 367 KKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMA-SFNEVKPLILA 445 (592)
Q Consensus 367 ~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma-~~~e~rPIIFa 445 (592)
++|+++|+. ..| .....+.|-.......++.+++.. .|++|-+++.+.. +++++.+. ......-+|+=
T Consensus 203 ~~V~v~~r~----~~r---a~~la~~~g~~~~~~~~~~~~l~~--aDvVi~at~~~~~--~~~~~~~~~~~~~~~~~viD 271 (311)
T cd05213 203 AEITIANRT----YER---AEELAKELGGNAVPLDELLELLNE--ADVVISATGAPHY--AKIVERAMKKRSGKPRLIVD 271 (311)
T ss_pred CEEEEEeCC----HHH---HHHHHHHcCCeEEeHHHHHHHHhc--CCEEEECCCCCch--HHHHHHHHhhCCCCCeEEEE
Confidence 679999873 111 111222221111112357777765 8999999887754 66666653 32210347778
Q ss_pred cCCCCC
Q 007703 446 LSNPTS 451 (592)
Q Consensus 446 LSNPt~ 451 (592)
||||-.
T Consensus 272 lavPrd 277 (311)
T cd05213 272 LAVPRD 277 (311)
T ss_pred eCCCCC
Confidence 999863
No 23
>PRK14031 glutamate dehydrogenase; Provisional
Probab=96.88 E-value=0.041 Score=61.10 Aligned_cols=182 Identities=16% Similarity=0.120 Sum_probs=123.9
Q ss_pred CChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCCchHHH--HHHHHcCC---C-cee----------ccCCcchHHHHHH
Q 007703 253 ATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFE--LLAKYGTT---H-LVF----------NDDIQGTASVVLA 316 (592)
Q Consensus 253 ~~geeY~~~idefv~av~~~fGp~~lIqfEDf~~~~Af~--lL~ryr~~---~-~~F----------NDDiQGTaaV~LA 316 (592)
.+-.|...|.-.||..+...+||+.-|--+|++..-.-. +.+.|+.. . -+| .+--..||-=+.-
T Consensus 134 ~s~~Eler~~r~f~~~L~~~iGp~~dipApDvgt~~~~M~~i~d~y~~~~~~~~g~~tgkp~~~GGs~~r~~aTg~Gv~~ 213 (444)
T PRK14031 134 KSNAEVMRFCQAFMLELWRHIGPETDVPAGDIGVGGREVGFMFGMYKKLSHEFTGTFTGKGREFGGSLIRPEATGYGNIY 213 (444)
T ss_pred CCHHHHHHHHHHHHHHHHhccCCCCccCccccCCCHHHHHHHHHHHHhhcCCcceEECCCccccCCCCCCCcccHHHHHH
Confidence 456778899999999999999999989899987633322 66777531 1 233 2334568888888
Q ss_pred HHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhccc
Q 007703 317 GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE 396 (592)
Q Consensus 317 gll~Alr~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~ 396 (592)
++-.+++..|.+|+++||+|-|.|..|.-.|++|.+. |. +=+-+-|++|-|+... .|+..+..|-.+
T Consensus 214 ~~~~~~~~~g~~l~g~rVaVQGfGNVG~~aA~~L~e~-----GA------kVVaVSD~~G~iy~~~--Gld~~~l~~~~~ 280 (444)
T PRK14031 214 FLMEMLKTKGTDLKGKVCLVSGSGNVAQYTAEKVLEL-----GG------KVVTMSDSDGYIYDPD--GIDREKLDYIME 280 (444)
T ss_pred HHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEECCCCeEECCC--CCCHHHHHHHHH
Confidence 8999999999999999999999999999999988753 63 3355699999988754 465544332111
Q ss_pred cCC--CCCHH-------------HHhcccCCcEEEeccCCCCCCCHHHHHHHHccCCCCceEEecCC-CC
Q 007703 397 HEP--VNNLL-------------DAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVKPLILALSN-PT 450 (592)
Q Consensus 397 ~~~--~~~L~-------------e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~e~rPIIFaLSN-Pt 450 (592)
... .+++. |.+-.++.|+||=+.. .+..|++.++.+.... .-+|.--+| |+
T Consensus 281 ~k~~~~~~v~~~~~~~ga~~i~~d~~~~~~cDIliPaAl-~n~I~~~na~~l~a~g--~~~V~EgAN~P~ 347 (444)
T PRK14031 281 LKNLYRGRIREYAEKYGCKYVEGARPWGEKGDIALPSAT-QNELNGDDARQLVANG--VIAVSEGANMPS 347 (444)
T ss_pred HHhhcCCchhhhHhhcCCEEcCCcccccCCCcEEeeccc-ccccCHHHHHHHHhcC--CeEEECCCCCCC
Confidence 000 01111 1111246788885555 6788999888885310 126666777 54
No 24
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=96.76 E-value=0.0073 Score=65.89 Aligned_cols=120 Identities=27% Similarity=0.419 Sum_probs=77.3
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCch
Q 007703 309 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 388 (592)
Q Consensus 309 GTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~ 388 (592)
+..+|+.+++--|.+..| ++.+.+++|+|+|..|..++..+.. .|. ++++++|+.. .| ...
T Consensus 161 ~~~Sv~~~Av~~a~~~~~-~~~~~~vlViGaG~iG~~~a~~L~~-----~G~------~~V~v~~r~~----~r---a~~ 221 (423)
T PRK00045 161 GAVSVASAAVELAKQIFG-DLSGKKVLVIGAGEMGELVAKHLAE-----KGV------RKITVANRTL----ER---AEE 221 (423)
T ss_pred CCcCHHHHHHHHHHHhhC-CccCCEEEEECchHHHHHHHHHHHH-----CCC------CeEEEEeCCH----HH---HHH
Confidence 355666666544444444 6889999999999999999887753 364 6799887741 22 111
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCC-CCCCHHHHHHHHcc--CCCCceEEecCCCC
Q 007703 389 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVG-RTFTKEVIEAMASF--NEVKPLILALSNPT 450 (592)
Q Consensus 389 ~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~-g~Ft~evv~~Ma~~--~e~rPIIFaLSNPt 450 (592)
..+.|.....+..++.+++. +.|++|-+++.+ ..++++.++.+.+. .. ..+|+=||+|-
T Consensus 222 la~~~g~~~~~~~~~~~~l~--~aDvVI~aT~s~~~~i~~~~l~~~~~~~~~~-~~vviDla~Pr 283 (423)
T PRK00045 222 LAEEFGGEAIPLDELPEALA--EADIVISSTGAPHPIIGKGMVERALKARRHR-PLLLVDLAVPR 283 (423)
T ss_pred HHHHcCCcEeeHHHHHHHhc--cCCEEEECCCCCCcEEcHHHHHHHHhhccCC-CeEEEEeCCCC
Confidence 22222101111235667776 489999987765 47899999987531 12 35888999997
No 25
>PLN02494 adenosylhomocysteinase
Probab=96.71 E-value=0.018 Score=64.32 Aligned_cols=130 Identities=16% Similarity=0.216 Sum_probs=93.4
Q ss_pred CCceec----------cCCcchHHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCc
Q 007703 299 THLVFN----------DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 368 (592)
Q Consensus 299 ~~~~FN----------DDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~ 368 (592)
.+|+|| |...||+--++-|++ |.++..+.+.+++|+|.|..|.++|..+.. .|. +
T Consensus 215 ~~Pvi~vnds~~K~~fDn~yGtgqS~~d~i~---r~t~i~LaGKtVvViGyG~IGr~vA~~aka-----~Ga-------~ 279 (477)
T PLN02494 215 LFPAINVNDSVTKSKFDNLYGCRHSLPDGLM---RATDVMIAGKVAVICGYGDVGKGCAAAMKA-----AGA-------R 279 (477)
T ss_pred CCCEEEEcChhhhhhhhccccccccHHHHHH---HhcCCccCCCEEEEECCCHHHHHHHHHHHH-----CCC-------E
Confidence 677776 446788888887777 667888999999999999999999998853 263 5
Q ss_pred EEEEccCCcccCCCccCCchhchhhccc-cCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHccCCCCceEEecC
Q 007703 369 ICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVKPLILALS 447 (592)
Q Consensus 369 i~lvD~~GLv~~~R~~~l~~~k~~fA~~-~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~e~rPIIFaLS 447 (592)
++++|.+.. +...|.. .-...++.|+++. .|++|=+++..++++++.++.|.. .-++.-.+
T Consensus 280 VIV~e~dp~------------r~~eA~~~G~~vv~leEal~~--ADVVI~tTGt~~vI~~e~L~~MK~----GAiLiNvG 341 (477)
T PLN02494 280 VIVTEIDPI------------CALQALMEGYQVLTLEDVVSE--ADIFVTTTGNKDIIMVDHMRKMKN----NAIVCNIG 341 (477)
T ss_pred EEEEeCCch------------hhHHHHhcCCeeccHHHHHhh--CCEEEECCCCccchHHHHHhcCCC----CCEEEEcC
Confidence 777776421 1111111 1112368888875 899998777777888999998875 66787777
Q ss_pred CCCCCCCCCHHHHhcc
Q 007703 448 NPTSQSECTAEEAYTW 463 (592)
Q Consensus 448 NPt~~aEct~e~A~~w 463 (592)
.+. .|+.-+...++
T Consensus 342 r~~--~eID~~aL~~~ 355 (477)
T PLN02494 342 HFD--NEIDMLGLETY 355 (477)
T ss_pred CCC--CccCHHHHhhc
Confidence 765 77777666554
No 26
>PRK14982 acyl-ACP reductase; Provisional
Probab=96.60 E-value=0.013 Score=62.75 Aligned_cols=113 Identities=21% Similarity=0.341 Sum_probs=79.2
Q ss_pred hHHHHHHHHHHHHHHhCCCcccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCch
Q 007703 310 TASVVLAGVVAALKLIGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 388 (592)
Q Consensus 310 TaaV~LAgll~Alr~~g~~l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~ 388 (592)
|+++...++--|.+..|..|++.+++|.|| |+.|--++++|... .|. +++++++++ ..| +..
T Consensus 134 T~~ll~~~V~la~~~lg~~l~~k~VLVtGAtG~IGs~lar~L~~~----~gv------~~lilv~R~----~~r---l~~ 196 (340)
T PRK14982 134 TAYVICRQVEQNAPRLGIDLSKATVAVVGATGDIGSAVCRWLDAK----TGV------AELLLVARQ----QER---LQE 196 (340)
T ss_pred HHHHHHHHHHHhHHHhccCcCCCEEEEEccChHHHHHHHHHHHhh----CCC------CEEEEEcCC----HHH---HHH
Confidence 678888888889999999999999999999 89999999888642 243 678888764 112 333
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCCCC--CCHHHHHHHHccCCCCc-eEEecCCCCC
Q 007703 389 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRT--FTKEVIEAMASFNEVKP-LILALSNPTS 451 (592)
Q Consensus 389 ~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~--Ft~evv~~Ma~~~e~rP-IIFaLSNPt~ 451 (592)
.+.++.. ....+|.+++.. +|+++=+++.+.. .+++.++ +| +|+=++.|-.
T Consensus 197 La~el~~--~~i~~l~~~l~~--aDiVv~~ts~~~~~~I~~~~l~--------~~~~viDiAvPRD 250 (340)
T PRK14982 197 LQAELGG--GKILSLEEALPE--ADIVVWVASMPKGVEIDPETLK--------KPCLMIDGGYPKN 250 (340)
T ss_pred HHHHhcc--ccHHhHHHHHcc--CCEEEECCcCCcCCcCCHHHhC--------CCeEEEEecCCCC
Confidence 3333321 122367788875 8999988776432 6776552 55 4556899864
No 27
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=96.56 E-value=0.014 Score=60.88 Aligned_cols=138 Identities=19% Similarity=0.256 Sum_probs=89.8
Q ss_pred cchHHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCc
Q 007703 308 QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (592)
Q Consensus 308 QGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~ 387 (592)
..+-+++=.++.-+++..+..|.+.+++|+|+|.+|..+|+.+.. .|. +++++|++. . .+.
T Consensus 128 ~n~~~~Ae~ai~~al~~~~~~l~gk~v~IiG~G~iG~avA~~L~~-----~G~-------~V~v~~R~~----~---~~~ 188 (287)
T TIGR02853 128 YNSIPTAEGAIMMAIEHTDFTIHGSNVMVLGFGRTGMTIARTFSA-----LGA-------RVFVGARSS----A---DLA 188 (287)
T ss_pred EccHhHHHHHHHHHHHhcCCCCCCCEEEEEcChHHHHHHHHHHHH-----CCC-------EEEEEeCCH----H---HHH
Confidence 445566656666777888889999999999999999999998864 252 588888741 1 111
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHccCCCCceEEecCCCCCCCCCCHHHHhccccCc
Q 007703 388 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVKPLILALSNPTSQSECTAEEAYTWSKGR 467 (592)
Q Consensus 388 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~e~rPIIFaLSNPt~~aEct~e~A~~wt~G~ 467 (592)
..+ .+....-...+|.+.++. .|++|=+. +.+.++++.++.|.+ .-+|+=+|..- -++.++.|-+ -+-+
T Consensus 189 ~~~-~~g~~~~~~~~l~~~l~~--aDiVint~-P~~ii~~~~l~~~k~----~aliIDlas~P--g~tdf~~Ak~-~G~~ 257 (287)
T TIGR02853 189 RIT-EMGLIPFPLNKLEEKVAE--IDIVINTI-PALVLTADVLSKLPK----HAVIIDLASKP--GGTDFEYAKK-RGIK 257 (287)
T ss_pred HHH-HCCCeeecHHHHHHHhcc--CCEEEECC-ChHHhCHHHHhcCCC----CeEEEEeCcCC--CCCCHHHHHH-CCCE
Confidence 111 000001112357777764 89999654 345889998888864 66788776422 4555644433 3447
Q ss_pred EEEecCCC
Q 007703 468 AIFASGSP 475 (592)
Q Consensus 468 aifAsGSP 475 (592)
++.+-|-|
T Consensus 258 a~~~~glP 265 (287)
T TIGR02853 258 ALLAPGLP 265 (287)
T ss_pred EEEeCCCC
Confidence 88888865
No 28
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=96.49 E-value=0.2 Score=55.93 Aligned_cols=188 Identities=17% Similarity=0.184 Sum_probs=129.3
Q ss_pred CChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCCchHHH---HHHHHcC---CC-ceec----------cCCcchHHHHH
Q 007703 253 ATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFE---LLAKYGT---TH-LVFN----------DDIQGTASVVL 315 (592)
Q Consensus 253 ~~geeY~~~idefv~av~~~fGp~~lIqfEDf~~~~Af~---lL~ryr~---~~-~~FN----------DDiQGTaaV~L 315 (592)
.+..|-..|...||..+.+..||+.=|-=.|++. ++.+ +.+.|+. .+ .|+- +--..||-=++
T Consensus 143 ~s~~El~r~~r~f~~eL~~~IGp~~DvpA~DvGt-~~rem~~~~~~y~~~~~~~~gv~TGK~~~~GGs~~r~eATG~Gv~ 221 (454)
T PTZ00079 143 KSDNEVMRFCQSFMTELYRHIGPDTDVPAGDIGV-GGREIGYLFGQYKKLRNNFEGTLTGKNVKWGGSNIRPEATGYGLV 221 (454)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCccchhhcCC-CHHHHHHHHHHHHHHhCCCCceeCCCCCCCCCCCCCCcccHHHHH
Confidence 4556678999999999999999999999999984 3333 5556642 22 2221 11224887788
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEE-EEccCCcccCCCccCCchhch---
Q 007703 316 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKIC-LVDSKGLIVSSRKDSLQHFKK--- 391 (592)
Q Consensus 316 Agll~Alr~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~-lvD~~GLv~~~R~~~l~~~k~--- 391 (592)
.++-.+++..|.+|++.|++|-|.|..|...|+.|.+ .|. +++ +.|++|-|+... .|+..+.
T Consensus 222 ~~~~~~l~~~~~~l~Gk~VaVqG~GnVg~~aa~~L~e-----~Ga-------kVVavSD~~G~iy~~~--Gld~~~l~~l 287 (454)
T PTZ00079 222 YFVLEVLKKLNDSLEGKTVVVSGSGNVAQYAVEKLLQ-----LGA-------KVLTMSDSDGYIHEPN--GFTKEKLAYL 287 (454)
T ss_pred HHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHH-----CCC-------EEEEEEcCCCcEECCC--CCCHHHHHHH
Confidence 8889999999999999999999999999999998865 363 455 999999999875 4654332
Q ss_pred ------------hhccccCCCC--CHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHccCCCCceEEecCC-CCCCCCCC
Q 007703 392 ------------PWAHEHEPVN--NLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVKPLILALSN-PTSQSECT 456 (592)
Q Consensus 392 ------------~fA~~~~~~~--~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~e~rPIIFaLSN-Pt~~aEct 456 (592)
.|+...+..+ +- +.+-.++.|||+=+.. .+..|++-.+.+-+. . -.+|.=-+| |++. |
T Consensus 288 ~~~k~~~~g~i~~~~~~~~~a~~~~~-~~~~~~~cDI~iPcA~-~n~I~~~~a~~l~~~-~-ak~V~EgAN~p~t~-e-- 360 (454)
T PTZ00079 288 MDLKNVKRGRLKEYAKHSSTAKYVPG-KKPWEVPCDIAFPCAT-QNEINLEDAKLLIKN-G-CKLVAEGANMPTTI-E-- 360 (454)
T ss_pred HHHHhhcCCcHHhhhhccCCcEEeCC-cCcccCCccEEEeccc-cccCCHHHHHHHHHc-C-CeEEEecCCCCCCH-H--
Confidence 1211000000 11 1122368899997776 679999999988532 3 558887888 7732 2
Q ss_pred HHHHhc
Q 007703 457 AEEAYT 462 (592)
Q Consensus 457 ~e~A~~ 462 (592)
+++.+.
T Consensus 361 A~~~L~ 366 (454)
T PTZ00079 361 ATHLFK 366 (454)
T ss_pred HHHHHH
Confidence 445543
No 29
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=96.42 E-value=0.023 Score=55.12 Aligned_cols=89 Identities=20% Similarity=0.340 Sum_probs=67.5
Q ss_pred HHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhcc
Q 007703 317 GVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH 395 (592)
Q Consensus 317 gll~Alr~~g~~l~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~ 395 (592)
+.+-.++....+|.+.+++|+|+|. .|..+|+.|.. .| .++++++++
T Consensus 30 a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~-----~g-------~~V~v~~r~-------------------- 77 (168)
T cd01080 30 GILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLN-----RN-------ATVTVCHSK-------------------- 77 (168)
T ss_pred HHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhh-----CC-------CEEEEEECC--------------------
Confidence 3344555566789999999999998 59889888864 24 258888864
Q ss_pred ccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHccCCCCceEEecCCCC
Q 007703 396 EHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVKPLILALSNPT 450 (592)
Q Consensus 396 ~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~e~rPIIFaLSNPt 450 (592)
...|.+.++. .|++|.+++.+..|+++.++ + .-+|+=++.|-
T Consensus 78 ----~~~l~~~l~~--aDiVIsat~~~~ii~~~~~~------~-~~viIDla~pr 119 (168)
T cd01080 78 ----TKNLKEHTKQ--ADIVIVAVGKPGLVKGDMVK------P-GAVVIDVGINR 119 (168)
T ss_pred ----chhHHHHHhh--CCEEEEcCCCCceecHHHcc------C-CeEEEEccCCC
Confidence 0357788886 99999999998899999763 2 45778888876
No 30
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=96.34 E-value=0.0038 Score=57.63 Aligned_cols=102 Identities=26% Similarity=0.454 Sum_probs=66.2
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhccc---cCCCCCH
Q 007703 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE---HEPVNNL 403 (592)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~---~~~~~~L 403 (592)
.++++.|++|+|||.+|-+++..|.. .|. ++|+++++. .+| .......|... ..+..++
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~-----~g~------~~i~i~nRt----~~r---a~~l~~~~~~~~~~~~~~~~~ 69 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAA-----LGA------KEITIVNRT----PER---AEALAEEFGGVNIEAIPLEDL 69 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHH-----TTS------SEEEEEESS----HHH---HHHHHHHHTGCSEEEEEGGGH
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHH-----cCC------CEEEEEECC----HHH---HHHHHHHcCccccceeeHHHH
Confidence 38999999999999999888887765 365 789999873 222 22333333110 1123456
Q ss_pred HHHhcccCCcEEEeccCCCC-CCCHHHHHHHHccCCCC-ceEEecCCCCCC
Q 007703 404 LDAVKVIKPTILIGSSGVGR-TFTKEVIEAMASFNEVK-PLILALSNPTSQ 452 (592)
Q Consensus 404 ~e~V~~vkPtvLIG~S~~~g-~Ft~evv~~Ma~~~e~r-PIIFaLSNPt~~ 452 (592)
.+.+.. .|++|-+++.+. .++++.++.... + .+||=||+|-.-
T Consensus 70 ~~~~~~--~DivI~aT~~~~~~i~~~~~~~~~~----~~~~v~Dla~Pr~i 114 (135)
T PF01488_consen 70 EEALQE--ADIVINATPSGMPIITEEMLKKASK----KLRLVIDLAVPRDI 114 (135)
T ss_dssp CHHHHT--ESEEEE-SSTTSTSSTHHHHTTTCH----HCSEEEES-SS-SB
T ss_pred HHHHhh--CCeEEEecCCCCcccCHHHHHHHHh----hhhceeccccCCCC
Confidence 566664 899999888763 778888764321 2 499999999743
No 31
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=96.26 E-value=0.024 Score=57.31 Aligned_cols=132 Identities=25% Similarity=0.317 Sum_probs=92.6
Q ss_pred cchHHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCc
Q 007703 308 QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (592)
Q Consensus 308 QGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~ 387 (592)
.-||-=+..++-.+++..+.+|++.||+|.|-|..|.++|++|.+. |. +=+.+.|++|-++...+ |+
T Consensus 8 ~~Tg~Gv~~~~~~~~~~~~~~l~~~~v~I~G~G~VG~~~a~~L~~~-----g~------~vv~v~D~~g~~~~~~G--ld 74 (227)
T cd01076 8 EATGRGVAYATREALKKLGIGLAGARVAIQGFGNVGSHAARFLHEA-----GA------KVVAVSDSDGTIYNPDG--LD 74 (227)
T ss_pred ccchHHHHHHHHHHHHhcCCCccCCEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEECCCCeEECCCC--CC
Confidence 4577777888888999999999999999999999999999988653 53 34559999999988653 43
Q ss_pred hhch-hhccccCC------C--CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHccCCCCceEEecCC-CCCCCCCCH
Q 007703 388 HFKK-PWAHEHEP------V--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVKPLILALSN-PTSQSECTA 457 (592)
Q Consensus 388 ~~k~-~fA~~~~~------~--~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~e~rPIIFaLSN-Pt~~aEct~ 457 (592)
.... .+.+.... . -+- +.+-..+.||||=++ .++..|++.+..+. -++|.--+| |++ +| +
T Consensus 75 ~~~l~~~~~~~g~l~~~~~~~~~~~-~~i~~~~~Dvlip~a-~~~~i~~~~~~~l~-----a~~I~egAN~~~t-~~--a 144 (227)
T cd01076 75 VPALLAYKKEHGSVLGFPGAERITN-EELLELDCDILIPAA-LENQITADNADRIK-----AKIIVEAANGPTT-PE--A 144 (227)
T ss_pred HHHHHHHHHhcCCcccCCCceecCC-ccceeecccEEEecC-ccCccCHHHHhhce-----eeEEEeCCCCCCC-HH--H
Confidence 2221 11111100 0 112 234445889999777 57799999999885 789999998 663 33 4
Q ss_pred HHHhc
Q 007703 458 EEAYT 462 (592)
Q Consensus 458 e~A~~ 462 (592)
++.++
T Consensus 145 ~~~L~ 149 (227)
T cd01076 145 DEILH 149 (227)
T ss_pred HHHHH
Confidence 45443
No 32
>PRK14030 glutamate dehydrogenase; Provisional
Probab=96.26 E-value=0.18 Score=56.05 Aligned_cols=189 Identities=15% Similarity=0.103 Sum_probs=129.7
Q ss_pred CChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCCchHHH---HHHHHcC----CCceec----------cCCcchHHHHH
Q 007703 253 ATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFE---LLAKYGT----THLVFN----------DDIQGTASVVL 315 (592)
Q Consensus 253 ~~geeY~~~idefv~av~~~fGp~~lIqfEDf~~~~Af~---lL~ryr~----~~~~FN----------DDiQGTaaV~L 315 (592)
.+..|-..|.-.||..+.+..||+.=|-=.|++. ++.+ +++.|+. ...++. +--..||-=+.
T Consensus 134 ~s~~Eler~~r~f~~~L~~~iGp~~DIpApDvgt-~~~~M~w~~d~y~~~~~~~~g~vTGkp~~~gGs~gr~~ATg~Gv~ 212 (445)
T PRK14030 134 KSDAEIMRFCQAFMLELWRHIGPDTDVPAGDIGV-GGREVGYMFGMYKKLTREFTGTLTGKGLEFGGSLIRPEATGFGAL 212 (445)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCccccccCC-CHHHHHHHHHHHHhccCccccEEEccccccCCCCCCCCccHHHHH
Confidence 4556888999999999998889988777888874 3333 5677764 222221 11223888888
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhh--
Q 007703 316 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPW-- 393 (592)
Q Consensus 316 Agll~Alr~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~f-- 393 (592)
.++-.+++..|.+|++.||+|-|-|..|...|+.|.+ .|. +=+-+-|++|-|++.. .|+..+..+
T Consensus 213 ~~~~~~~~~~g~~l~g~~vaIQGfGnVG~~aA~~L~e-----~Ga------kvVavSD~~G~i~d~~--Gld~~~l~~l~ 279 (445)
T PRK14030 213 YFVHQMLETKGIDIKGKTVAISGFGNVAWGAATKATE-----LGA------KVVTISGPDGYIYDPD--GISGEKIDYML 279 (445)
T ss_pred HHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHH-----CCC------EEEEEEcCCceEECCC--CCCHHHHHHHH
Confidence 8888999999999999999999999999999998865 364 4567789999998764 355433111
Q ss_pred -------------ccccCCC--CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHccCCCCceEEecCC-CCCCCCCCH
Q 007703 394 -------------AHEHEPV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVKPLILALSN-PTSQSECTA 457 (592)
Q Consensus 394 -------------A~~~~~~--~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~e~rPIIFaLSN-Pt~~aEct~ 457 (592)
+...+.. -+-.+ +-.++.||||=+.. ++..|++.++.+.+. . -.||.=-+| |++ +| +
T Consensus 280 ~~k~~~~~~~~~~~~~~~ga~~i~~~~-~~~~~cDVliPcAl-~n~I~~~na~~l~~~-~-ak~V~EgAN~p~t-~e--A 352 (445)
T PRK14030 280 ELRASGNDIVAPYAEKFPGSTFFAGKK-PWEQKVDIALPCAT-QNELNGEDADKLIKN-G-VLCVAEVSNMGCT-AE--A 352 (445)
T ss_pred HHHHhcCccHHHHHhcCCCCEEcCCcc-ceeccccEEeeccc-cccCCHHHHHHHHHc-C-CeEEEeCCCCCCC-HH--H
Confidence 1010010 01112 23468899996665 679999999999532 3 668888888 553 33 4
Q ss_pred HHHhc
Q 007703 458 EEAYT 462 (592)
Q Consensus 458 e~A~~ 462 (592)
++.+.
T Consensus 353 ~~iL~ 357 (445)
T PRK14030 353 IDKFI 357 (445)
T ss_pred HHHHH
Confidence 45554
No 33
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=96.04 E-value=0.049 Score=57.00 Aligned_cols=127 Identities=22% Similarity=0.292 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhh
Q 007703 314 VLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPW 393 (592)
Q Consensus 314 ~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~f 393 (592)
+-+++..+++..+.++.+.|++|+|+|.+|..++..+.. .| -+++++|++- .+..+
T Consensus 135 aegav~~a~~~~~~~l~g~kvlViG~G~iG~~~a~~L~~-----~G-------a~V~v~~r~~------------~~~~~ 190 (296)
T PRK08306 135 AEGAIMMAIEHTPITIHGSNVLVLGFGRTGMTLARTLKA-----LG-------ANVTVGARKS------------AHLAR 190 (296)
T ss_pred HHHHHHHHHHhCCCCCCCCEEEEECCcHHHHHHHHHHHH-----CC-------CEEEEEECCH------------HHHHH
Confidence 334556677888889999999999999999999888764 25 2688888851 11112
Q ss_pred cccc----CCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHccCCCCceEEecCCCCCCCCCCHHHHhccccC-cE
Q 007703 394 AHEH----EPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVKPLILALSNPTSQSECTAEEAYTWSKG-RA 468 (592)
Q Consensus 394 A~~~----~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~e~rPIIFaLSNPt~~aEct~e~A~~wt~G-~a 468 (592)
++.. -...+|.+.++. .|++|-++. ...++++.++.|.+ .-+|+=++... -.|..+.|.+ .| ++
T Consensus 191 ~~~~G~~~~~~~~l~~~l~~--aDiVI~t~p-~~~i~~~~l~~~~~----g~vIIDla~~p--ggtd~~~a~~--~Gv~~ 259 (296)
T PRK08306 191 ITEMGLSPFHLSELAEEVGK--IDIIFNTIP-ALVLTKEVLSKMPP----EALIIDLASKP--GGTDFEYAEK--RGIKA 259 (296)
T ss_pred HHHcCCeeecHHHHHHHhCC--CCEEEECCC-hhhhhHHHHHcCCC----CcEEEEEccCC--CCcCeeehhh--CCeEE
Confidence 2110 112467777774 999998654 55789999888875 66777555433 2344443322 34 45
Q ss_pred EEecCCC
Q 007703 469 IFASGSP 475 (592)
Q Consensus 469 ifAsGSP 475 (592)
+.++|-|
T Consensus 260 ~~~~~lp 266 (296)
T PRK08306 260 LLAPGLP 266 (296)
T ss_pred EEECCCC
Confidence 5566644
No 34
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=95.93 E-value=0.1 Score=58.44 Aligned_cols=122 Identities=18% Similarity=0.190 Sum_probs=83.8
Q ss_pred CCceeccCCcchHHHH-------HHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEE
Q 007703 299 THLVFNDDIQGTASVV-------LAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICL 371 (592)
Q Consensus 299 ~~~~FNDDiQGTaaV~-------LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~l 371 (592)
.+|++|-+---|-++. ++.+-+.+|.++..|.+.+++|+|.|..|.++|..+.. .|. ++++
T Consensus 215 ~iPV~nv~d~~tk~~aD~~~G~~~s~~d~~~R~~~~~LaGKtVgVIG~G~IGr~vA~rL~a-----~Ga-------~ViV 282 (476)
T PTZ00075 215 LFPAINVNDSVTKSKFDNIYGCRHSLIDGIFRATDVMIAGKTVVVCGYGDVGKGCAQALRG-----FGA-------RVVV 282 (476)
T ss_pred CceEEEeCCcchHHHHHHHHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHH-----CCC-------EEEE
Confidence 6899886654444433 44445557788899999999999999999999998864 263 4777
Q ss_pred EccCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHccCCCCceEEecCCC
Q 007703 372 VDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVKPLILALSNP 449 (592)
Q Consensus 372 vD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~e~rPIIFaLSNP 449 (592)
+|++-. +. +.... +.-...++.|+++. .|++|-+.+..++|+++.++.|.. .-|+.-.+..
T Consensus 283 ~e~dp~----~a--~~A~~-----~G~~~~~leell~~--ADIVI~atGt~~iI~~e~~~~MKp----GAiLINvGr~ 343 (476)
T PTZ00075 283 TEIDPI----CA--LQAAM-----EGYQVVTLEDVVET--ADIFVTATGNKDIITLEHMRRMKN----NAIVGNIGHF 343 (476)
T ss_pred EeCCch----hH--HHHHh-----cCceeccHHHHHhc--CCEEEECCCcccccCHHHHhccCC----CcEEEEcCCC
Confidence 766411 10 11011 11112468888875 999999888888999999999975 4555555554
No 35
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.76 E-value=0.063 Score=56.19 Aligned_cols=108 Identities=19% Similarity=0.314 Sum_probs=78.8
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCc
Q 007703 309 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (592)
Q Consensus 309 GTaaV~LAgll~Alr~~g~~l~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~ 387 (592)
+.+-.|-.|++..++..+.++++++++++|+|- +|-.||.+|.. .| | .+.+++++
T Consensus 137 ~~~p~T~~gii~~L~~~~i~l~Gk~vvViG~gg~vGkpia~~L~~-----~g-----a--tVtv~~~~------------ 192 (283)
T PRK14192 137 AYGSATPAGIMRLLKAYNIELAGKHAVVVGRSAILGKPMAMMLLN-----AN-----A--TVTICHSR------------ 192 (283)
T ss_pred cccCCcHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHHh-----CC-----C--EEEEEeCC------------
Confidence 346677799999999999999999999999997 99999998864 24 2 67788752
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHccCCCCceEEec-CCCC---CCCCCCHHHHh
Q 007703 388 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVKPLILAL-SNPT---SQSECTAEEAY 461 (592)
Q Consensus 388 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~e~rPIIFaL-SNPt---~~aEct~e~A~ 461 (592)
..+|.+.++ +.|++|-+.+.++.|+.+.++ + .-+|+=. .||. -.-++.+|++.
T Consensus 193 ------------t~~L~~~~~--~aDIvI~AtG~~~~v~~~~lk------~-gavViDvg~n~~~~~~~GDvd~~~~~ 249 (283)
T PRK14192 193 ------------TQNLPELVK--QADIIVGAVGKPELIKKDWIK------Q-GAVVVDAGFHPRDGGGVGDIELQGIE 249 (283)
T ss_pred ------------chhHHHHhc--cCCEEEEccCCCCcCCHHHcC------C-CCEEEEEEEeecCCCCcccccHHHhh
Confidence 124667776 499999999989888888764 2 4455544 3663 11245555554
No 36
>PLN00203 glutamyl-tRNA reductase
Probab=95.75 E-value=0.031 Score=63.09 Aligned_cols=201 Identities=19% Similarity=0.282 Sum_probs=114.2
Q ss_pred chHHHHHHHHHHHHHHhCC-CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCc
Q 007703 309 GTASVVLAGVVAALKLIGG-TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (592)
Q Consensus 309 GTaaV~LAgll~Alr~~g~-~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~ 387 (592)
|--+|+-+++=-|.+.-|. +|.+.+|+|+|||..|..+++.+.. .|. ++|+++++. ..| ..
T Consensus 243 ~~vSv~s~Av~la~~~~~~~~l~~kkVlVIGAG~mG~~~a~~L~~-----~G~------~~V~V~nRs----~er---a~ 304 (519)
T PLN00203 243 GAVSVSSAAVELALMKLPESSHASARVLVIGAGKMGKLLVKHLVS-----KGC------TKMVVVNRS----EER---VA 304 (519)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCCCCEEEEEeCHHHHHHHHHHHHh-----CCC------CeEEEEeCC----HHH---HH
Confidence 3445555555556666664 6999999999999999888877653 364 679998874 122 22
Q ss_pred hhchhhcc---ccCCCCCHHHHhcccCCcEEEeccCCC-CCCCHHHHHHHHccC---CCCc-eEEecCCCCCCCCCCHHH
Q 007703 388 HFKKPWAH---EHEPVNNLLDAVKVIKPTILIGSSGVG-RTFTKEVIEAMASFN---EVKP-LILALSNPTSQSECTAEE 459 (592)
Q Consensus 388 ~~k~~fA~---~~~~~~~L~e~V~~vkPtvLIG~S~~~-g~Ft~evv~~Ma~~~---e~rP-IIFaLSNPt~~aEct~e~ 459 (592)
.....|-. ...+..++.+++.. .|++|.+++.+ .+|+++.++.|-+.. . +| +|+=||.|-.--.+-.
T Consensus 305 ~La~~~~g~~i~~~~~~dl~~al~~--aDVVIsAT~s~~pvI~~e~l~~~~~~~~~~~-~~~~~IDLAvPRdIdp~v~-- 379 (519)
T PLN00203 305 ALREEFPDVEIIYKPLDEMLACAAE--ADVVFTSTSSETPLFLKEHVEALPPASDTVG-GKRLFVDISVPRNVGACVS-- 379 (519)
T ss_pred HHHHHhCCCceEeecHhhHHHHHhc--CCEEEEccCCCCCeeCHHHHHHhhhcccccC-CCeEEEEeCCCCCCccccc--
Confidence 22222210 01123467778875 89999876544 489999999985321 2 34 6677999963211111
Q ss_pred HhccccCcEEEecCCCCCcceeCCeeeCccCCcccccchhhhHHHHHhCCcccCHHHHHHHHHHH-HcccC--ccccCCC
Q 007703 460 AYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEAL-AKQVT--EENFEKG 536 (592)
Q Consensus 460 A~~wt~G~aifAsGSPF~pV~~~G~~~~p~Q~NN~yiFPGiglG~~~s~a~~Itd~m~~aAA~aL-A~~v~--~~~~~~g 536 (592)
...|+++|===-|-.+......-..+-... |+.+ .+.+. .+.+..-
T Consensus 380 ------------------------------~l~~v~lydiDdL~~i~~~n~~~R~~~~~~-Ae~II~ee~~~F~~w~~~~ 428 (519)
T PLN00203 380 ------------------------------ELESARVYNVDDLKEVVAANKEDRLRKAME-AQTIIREESKNFEAWRDSL 428 (519)
T ss_pred ------------------------------cCCCCeEEEeccHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHhc
Confidence 111222221112222332222212221222 2222 11111 1134456
Q ss_pred cccCCCCCchhhHHHHHHHHHHHHHHc
Q 007703 537 LIYPPFSNIRKISANIAANVAAKAYEL 563 (592)
Q Consensus 537 ~l~P~~~~ir~vs~~VA~aVa~~A~~~ 563 (592)
.+-|-|.++|+-+..|..+=.+.+.+.
T Consensus 429 ~~~p~I~~lr~~~~~i~~~Eler~~~k 455 (519)
T PLN00203 429 ETVPTIKKLRSYAERIRAAELEKCLSK 455 (519)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 789999999999999998888888765
No 37
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=95.74 E-value=0.048 Score=60.04 Aligned_cols=215 Identities=21% Similarity=0.300 Sum_probs=128.9
Q ss_pred CchHHHHHHHHcCCCceeccCCcchHHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhh
Q 007703 286 NHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEET 365 (592)
Q Consensus 286 ~~~Af~lL~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA 365 (592)
-..||..=+|+|.+--. -.|--+|.-|++=-|-++.|. |++.+++|+|||..|..+|.-|... |+
T Consensus 138 FqkAi~~gKrvRseT~I----~~~~VSi~saAv~lA~~~~~~-L~~~~vlvIGAGem~~lva~~L~~~-----g~----- 202 (414)
T COG0373 138 FQKAISVGKRVRSETGI----GKGAVSISSAAVELAKRIFGS-LKDKKVLVIGAGEMGELVAKHLAEK-----GV----- 202 (414)
T ss_pred HHHHHHHHHHhhcccCC----CCCccchHHHHHHHHHHHhcc-cccCeEEEEcccHHHHHHHHHHHhC-----CC-----
Confidence 35677777777753211 123334444555555555544 9999999999999999998888753 65
Q ss_pred cCcEEEEccCCcccCCCccCCchhchhhcccc----CCCCCHHHHhcccCCcEEEec-cCCCCCCCHHHHHHHHccCCCC
Q 007703 366 RKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH----EPVNNLLDAVKVIKPTILIGS-SGVGRTFTKEVIEAMASFNEVK 440 (592)
Q Consensus 366 ~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~----~~~~~L~e~V~~vkPtvLIG~-S~~~g~Ft~evv~~Ma~~~e~r 440 (592)
++|+++.+. ..| -+.+|+.- -....|.+.+.. .||+|-. |++.-+++.+.++.-.+..+ +
T Consensus 203 -~~i~IaNRT----~er-------A~~La~~~~~~~~~l~el~~~l~~--~DvVissTsa~~~ii~~~~ve~a~~~r~-~ 267 (414)
T COG0373 203 -KKITIANRT----LER-------AEELAKKLGAEAVALEELLEALAE--ADVVISSTSAPHPIITREMVERALKIRK-R 267 (414)
T ss_pred -CEEEEEcCC----HHH-------HHHHHHHhCCeeecHHHHHHhhhh--CCEEEEecCCCccccCHHHHHHHHhccc-C
Confidence 789888762 222 22334321 122456666665 8888754 45556899999887665333 3
Q ss_pred ceEEecCCCCCCCCCCHHHHhccccCcEEEecCCCCCcceeCCeeeCccCCcccccchhhhHHHHHhCCcccCHHHHHHH
Q 007703 441 PLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAA 520 (592)
Q Consensus 441 PIIFaLSNPt~~aEct~e~A~~wt~G~aifAsGSPF~pV~~~G~~~~p~Q~NN~yiFPGiglG~~~s~a~~Itd~m~~aA 520 (592)
=+||=|+||-.- ++ ..+.-||+++|===-|-.+.-.-..-..+...+
T Consensus 268 ~livDiavPRdi---------e~-----------------------~v~~l~~v~l~~iDDL~~iv~~n~~~R~~~~~~- 314 (414)
T COG0373 268 LLIVDIAVPRDV---------EP-----------------------EVGELPNVFLYTIDDLEEIVEENLEARKEEAAK- 314 (414)
T ss_pred eEEEEecCCCCC---------Cc-----------------------cccCcCCeEEEehhhHHHHHHHhHHHHHHHHHH-
Confidence 499999999831 11 123345666664444444433322222232222
Q ss_pred HHHH-----HcccCccccCCCcccCCCCCchhhHHHHHHHHHHHHHHcCC
Q 007703 521 SEAL-----AKQVTEENFEKGLIYPPFSNIRKISANIAANVAAKAYELGV 565 (592)
Q Consensus 521 A~aL-----A~~v~~~~~~~g~l~P~~~~ir~vs~~VA~aVa~~A~~~G~ 565 (592)
|+++ +.+. +.+..-.+-|.+..+|+-+..|...-.+.|.+.--
T Consensus 315 ae~iIeee~~~~~--~~l~~~~~~~~i~~lr~~a~~v~~~ele~a~~~l~ 362 (414)
T COG0373 315 AEAIIEEELAEFM--EWLKKLEVVPTIRALREQAEDVREEELEKALKKLP 362 (414)
T ss_pred HHHHHHHHHHHHH--HHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2222 2221 13445678899999999888888888888885543
No 38
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=95.63 E-value=0.071 Score=52.72 Aligned_cols=123 Identities=15% Similarity=0.186 Sum_probs=82.7
Q ss_pred chHHHHHHHHHHHHHHh--CCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCC
Q 007703 309 GTASVVLAGVVAALKLI--GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 386 (592)
Q Consensus 309 GTaaV~LAgll~Alr~~--g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l 386 (592)
.||-=+..++-.+++.. +.+|++.+++|.|.|..|..+|+.|.+. | .++++.|++. +.+
T Consensus 4 aTg~Gv~~~~~~~~~~~~~~~~l~gk~v~I~G~G~vG~~~A~~L~~~-----G-------~~Vvv~D~~~-------~~~ 64 (200)
T cd01075 4 PTAYGVFLGMKAAAEHLLGTDSLEGKTVAVQGLGKVGYKLAEHLLEE-----G-------AKLIVADINE-------EAV 64 (200)
T ss_pred hhHHHHHHHHHHHHHHhcCCCCCCCCEEEEECCCHHHHHHHHHHHHC-----C-------CEEEEEcCCH-------HHH
Confidence 35655667777788875 8899999999999999999999988652 6 3688888651 123
Q ss_pred chhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHccCCCCceEEecCC-CCCCCCCCHHHHhc
Q 007703 387 QHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVKPLILALSN-PTSQSECTAEEAYT 462 (592)
Q Consensus 387 ~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~e~rPIIFaLSN-Pt~~aEct~e~A~~ 462 (592)
..++..|.. .. -+..+... .+.|+++=++. +++.|++.++.|. -++|..-+| |++. ..+++.++
T Consensus 65 ~~~~~~~g~--~~-v~~~~l~~-~~~Dv~vp~A~-~~~I~~~~~~~l~-----~~~v~~~AN~~~~~--~~~~~~L~ 129 (200)
T cd01075 65 ARAAELFGA--TV-VAPEEIYS-VDADVFAPCAL-GGVINDDTIPQLK-----AKAIAGAANNQLAD--PRHGQMLH 129 (200)
T ss_pred HHHHHHcCC--EE-Ecchhhcc-ccCCEEEeccc-ccccCHHHHHHcC-----CCEEEECCcCccCC--HhHHHHHH
Confidence 333333311 11 12233333 37999995555 6799999999985 678888888 7733 33455554
No 39
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=95.58 E-value=0.043 Score=50.36 Aligned_cols=108 Identities=22% Similarity=0.322 Sum_probs=67.1
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhcc
Q 007703 316 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH 395 (592)
Q Consensus 316 Agll~Alr~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~ 395 (592)
.|+.+|++..+.++++.+++|+|+|..|..+++.+.. .|. ++++++|++ .. ......+.+..
T Consensus 4 ~g~~~a~~~~~~~~~~~~i~iiG~G~~g~~~a~~l~~-----~g~------~~v~v~~r~----~~---~~~~~~~~~~~ 65 (155)
T cd01065 4 LGFVRALEEAGIELKGKKVLILGAGGAARAVAYALAE-----LGA------AKIVIVNRT----LE---KAKALAERFGE 65 (155)
T ss_pred HHHHHHHHhhCCCCCCCEEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEcCC----HH---HHHHHHHHHhh
Confidence 5889999998888999999999999888888877753 231 578888874 11 12222222221
Q ss_pred c--cCCCCCHHHHhcccCCcEEEeccCCCC------CCCHHHHHHHHccCCCCceEEecC-CCC
Q 007703 396 E--HEPVNNLLDAVKVIKPTILIGSSGVGR------TFTKEVIEAMASFNEVKPLILALS-NPT 450 (592)
Q Consensus 396 ~--~~~~~~L~e~V~~vkPtvLIG~S~~~g------~Ft~evv~~Ma~~~e~rPIIFaLS-NPt 450 (592)
. .....++.++++. +|++|-+...+- .|.+.. ... ..+|+=+| +|.
T Consensus 66 ~~~~~~~~~~~~~~~~--~Dvvi~~~~~~~~~~~~~~~~~~~------~~~-~~~v~D~~~~~~ 120 (155)
T cd01065 66 LGIAIAYLDLEELLAE--ADLIINTTPVGMKPGDELPLPPSL------LKP-GGVVYDVVYNPL 120 (155)
T ss_pred cccceeecchhhcccc--CCEEEeCcCCCCCCCCCCCCCHHH------cCC-CCEEEEcCcCCC
Confidence 1 0123456666654 899997766442 132221 234 67788775 444
No 40
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=95.53 E-value=0.23 Score=51.51 Aligned_cols=133 Identities=20% Similarity=0.138 Sum_probs=91.4
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEE-EEccCCcccCCCccCCc
Q 007703 309 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKIC-LVDSKGLIVSSRKDSLQ 387 (592)
Q Consensus 309 GTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~-lvD~~GLv~~~R~~~l~ 387 (592)
.||-=+.-++-.+++..+.+|++.||+|-|-|..|.+.|++|.+ .|. +++ +.|++|-|+... .|+
T Consensus 16 aTg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~e-----~Ga-------kvvaVsD~~G~i~~~~--Gld 81 (254)
T cd05313 16 ATGYGLVYFVEEMLKDRNETLKGKRVAISGSGNVAQYAAEKLLE-----LGA-------KVVTLSDSKGYVYDPD--GFT 81 (254)
T ss_pred hhHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHH-----CCC-------EEEEEECCCceEECCC--CCC
Confidence 46666777888889999999999999999999999999998865 363 455 999999998875 344
Q ss_pred hhch---------------hhccccC--CCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHccCCCCceEEecCC-C
Q 007703 388 HFKK---------------PWAHEHE--PVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVKPLILALSN-P 449 (592)
Q Consensus 388 ~~k~---------------~fA~~~~--~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~e~rPIIFaLSN-P 449 (592)
..+. .|....+ ..-+-.| +-.++.||||=+.. ++..|++.+..+.+ +. -.||.--+| |
T Consensus 82 ~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~~~~~-~~~~~~DIliPcAl-~~~I~~~na~~i~~-~~-ak~I~EgAN~p 157 (254)
T cd05313 82 GEKLAELKEIKEVRRGRVSEYAKKYGTAKYFEGKK-PWEVPCDIAFPCAT-QNEVDAEDAKLLVK-NG-CKYVAEGANMP 157 (254)
T ss_pred HHHHHHHHHHHHhcCCcHHHHhhcCCCCEEeCCcc-hhcCCCcEEEeccc-cccCCHHHHHHHHH-cC-CEEEEeCCCCC
Confidence 3221 1110000 0012222 22457899996654 67999999999853 23 678998888 8
Q ss_pred CCCCCCCHHHHhc
Q 007703 450 TSQSECTAEEAYT 462 (592)
Q Consensus 450 t~~aEct~e~A~~ 462 (592)
++. .+++.+.
T Consensus 158 ~t~---~a~~~L~ 167 (254)
T cd05313 158 CTA---EAIEVFR 167 (254)
T ss_pred CCH---HHHHHHH
Confidence 732 2445554
No 41
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.52 E-value=0.19 Score=51.74 Aligned_cols=191 Identities=18% Similarity=0.166 Sum_probs=101.8
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhc-------hhhccc--------
Q 007703 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK-------KPWAHE-------- 396 (592)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k-------~~fA~~-------- 396 (592)
.||.|+|+|..|.+||..++.. | .+++++|.+- . .++..+ ..+...
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~-----G-------~~V~l~d~~~----~---~l~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFH-----G-------FDVTIYDISD----E---ALEKAKERIAKLADRYVRDLEATKEAP 64 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhc-----C-------CeEEEEeCCH----H---HHHHHHHHHHHHHHHHHHcCCCChhhh
Confidence 5899999999999999887642 5 3688998641 1 111111 111000
Q ss_pred -------cCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHccCCCCceEEecCCCCCCCCCCHHHHhccccCcEE
Q 007703 397 -------HEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVKPLILALSNPTSQSECTAEEAYTWSKGRAI 469 (592)
Q Consensus 397 -------~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~e~rPIIFaLSNPt~~aEct~e~A~~wt~G~ai 469 (592)
-....++.++++. .|++|=+-.-.-.+.+++++.+.+... ...|+ .||.+++ .+.++.+.++-..=
T Consensus 65 ~~~~~~~i~~~~d~~~a~~~--aDlVieavpe~~~~k~~~~~~l~~~~~-~~~ii-~sntSt~---~~~~~~~~~~~~~r 137 (287)
T PRK08293 65 AEAALNRITLTTDLAEAVKD--ADLVIEAVPEDPEIKGDFYEELAKVAP-EKTIF-ATNSSTL---LPSQFAEATGRPEK 137 (287)
T ss_pred HHHHHcCeEEeCCHHHHhcC--CCEEEEeccCCHHHHHHHHHHHHhhCC-CCCEE-EECcccC---CHHHHHhhcCCccc
Confidence 0113578888875 788875432222356777777777666 55555 3565554 44444443321111
Q ss_pred EecCCCCCcceeCCeeeCccCCcccccchhhhHHHHHhCCcccCHHHHHHHHHHHHcccCccccCCCc-cc-CCCCCchh
Q 007703 470 FASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGL-IY-PPFSNIRK 547 (592)
Q Consensus 470 fAsGSPF~pV~~~G~~~~p~Q~NN~yiFPGiglG~~~s~a~~Itd~m~~aAA~aLA~~v~~~~~~~g~-l~-P~~~~ir~ 547 (592)
|....||.|+.... ..-| .....-+++.+. .+..+...+. +.. ++ |... --
T Consensus 138 ~vg~Hf~~p~~~~~---------lvev----------v~~~~t~~~~~~-~~~~~~~~~G-----k~pv~v~~d~p--gf 190 (287)
T PRK08293 138 FLALHFANEIWKNN---------TAEI----------MGHPGTDPEVFD-TVVAFAKAIG-----MVPIVLKKEQP--GY 190 (287)
T ss_pred EEEEcCCCCCCcCC---------eEEE----------eCCCCCCHHHHH-HHHHHHHHcC-----CeEEEecCCCC--CH
Confidence 33356777754221 1122 222333555444 4555555443 222 22 2222 25
Q ss_pred hHHHHHHHHHHHHH---HcCCCCCCCCchhHHHHH
Q 007703 548 ISANIAANVAAKAY---ELGVATRLPRPQNLVKCA 579 (592)
Q Consensus 548 vs~~VA~aVa~~A~---~~G~a~~~~~p~d~~~~i 579 (592)
|..++-.++...|. ++|+++ |+|+..-.
T Consensus 191 i~nRi~~~~~~ea~~l~~~g~a~----~~~iD~a~ 221 (287)
T PRK08293 191 ILNSLLVPFLSAALALWAKGVAD----PETIDKTW 221 (287)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCC----HHHHHHHH
Confidence 66666666666654 589875 45555443
No 42
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=95.46 E-value=0.043 Score=57.11 Aligned_cols=90 Identities=18% Similarity=0.290 Sum_probs=57.4
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCch-hchhhc
Q 007703 316 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH-FKKPWA 394 (592)
Q Consensus 316 Agll~Alr~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~-~k~~fA 394 (592)
.|++.+++..+..+++++++|+|||.||..|+..+.. .|+ ++|+++|+. ..|.+.|.. .+..|.
T Consensus 112 ~G~~~~l~~~~~~~~~k~vlIlGaGGaaraia~aL~~-----~G~------~~I~I~nR~----~~ka~~la~~l~~~~~ 176 (284)
T PRK12549 112 SGFAESFRRGLPDASLERVVQLGAGGAGAAVAHALLT-----LGV------ERLTIFDVD----PARAAALADELNARFP 176 (284)
T ss_pred HHHHHHHHhhccCccCCEEEEECCcHHHHHHHHHHHH-----cCC------CEEEEECCC----HHHHHHHHHHHHhhCC
Confidence 4677788766667888999999999999999888864 375 679999985 222222211 111111
Q ss_pred c-ccCCCCCHHHHhcccCCcEEEeccCCC
Q 007703 395 H-EHEPVNNLLDAVKVIKPTILIGSSGVG 422 (592)
Q Consensus 395 ~-~~~~~~~L~e~V~~vkPtvLIG~S~~~ 422 (592)
. ......++.+.++. .|++|.++..|
T Consensus 177 ~~~~~~~~~~~~~~~~--aDiVInaTp~G 203 (284)
T PRK12549 177 AARATAGSDLAAALAA--ADGLVHATPTG 203 (284)
T ss_pred CeEEEeccchHhhhCC--CCEEEECCcCC
Confidence 0 00112345555654 89999987755
No 43
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=95.39 E-value=0.052 Score=59.64 Aligned_cols=213 Identities=14% Similarity=0.194 Sum_probs=112.5
Q ss_pred chHHHHHHHHcCCCceeccCCcchHHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhc
Q 007703 287 HNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETR 366 (592)
Q Consensus 287 ~~Af~lL~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~ 366 (592)
..||+.=.|-|.+.-. + .|.-+|+-+++=-|-+.. .++++.|++|+|||.+|-.+|..|.. .|.
T Consensus 142 ~~A~~~aKrVrteT~I-~---~~~vSv~~~Av~la~~~~-~~l~~kkvlviGaG~~a~~va~~L~~-----~g~------ 205 (414)
T PRK13940 142 QKVFATAKRVRSETRI-G---HCPVSVAFSAITLAKRQL-DNISSKNVLIIGAGQTGELLFRHVTA-----LAP------ 205 (414)
T ss_pred HHHHHHHHHHHhccCC-C---CCCcCHHHHHHHHHHHHh-cCccCCEEEEEcCcHHHHHHHHHHHH-----cCC------
Confidence 3455555566643211 0 122234434443333333 45889999999999999888887753 365
Q ss_pred CcEEEEccCCcccCCCccCCchhchhhc-cccCCCCCHHHHhcccCCcEEEeccCCCC-CCCHHHHHHHHccCCCCce-E
Q 007703 367 KKICLVDSKGLIVSSRKDSLQHFKKPWA-HEHEPVNNLLDAVKVIKPTILIGSSGVGR-TFTKEVIEAMASFNEVKPL-I 443 (592)
Q Consensus 367 ~~i~lvD~~GLv~~~R~~~l~~~k~~fA-~~~~~~~~L~e~V~~vkPtvLIG~S~~~g-~Ft~evv~~Ma~~~e~rPI-I 443 (592)
++|+++++. .+|. ......|. ....+..+|.+.+.. .|++|-+++.+. ++|++.++ . +|. |
T Consensus 206 ~~I~V~nRt----~~ra---~~La~~~~~~~~~~~~~l~~~l~~--aDiVI~aT~a~~~vi~~~~~~------~-~~~~~ 269 (414)
T PRK13940 206 KQIMLANRT----IEKA---QKITSAFRNASAHYLSELPQLIKK--ADIIIAAVNVLEYIVTCKYVG------D-KPRVF 269 (414)
T ss_pred CEEEEECCC----HHHH---HHHHHHhcCCeEecHHHHHHHhcc--CCEEEECcCCCCeeECHHHhC------C-CCeEE
Confidence 679988874 2221 11222221 011223456677775 999998877764 67866542 3 665 4
Q ss_pred EecCCCCCCCCCCHHHHhccccCcEEEecCCCCCcceeCCeeeCccCCcccccchhhhHHHHHhCCcccCHHHHHHHHHH
Q 007703 444 LALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEA 523 (592)
Q Consensus 444 FaLSNPt~~aEct~e~A~~wt~G~aifAsGSPF~pV~~~G~~~~p~Q~NN~yiFPGiglG~~~s~a~~Itd~m~~aAA~a 523 (592)
+=|++|-.--+. .+...|+++|===-|-.+......-..+....|-.-
T Consensus 270 iDLavPRdidp~--------------------------------v~~l~~v~l~~iDdl~~i~~~n~~~R~~~~~~a~~i 317 (414)
T PRK13940 270 IDISIPQALDPK--------------------------------LGELEQNVYYCVDDINAVIEDNKDKRKYESSKAQKI 317 (414)
T ss_pred EEeCCCCCCCcc--------------------------------ccCcCCeEEEeHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 679999721100 011122222211112222222111112222222111
Q ss_pred HHcccC--ccccCCCcccCCCCCchhhHHHHHHHHHHHHHHc
Q 007703 524 LAKQVT--EENFEKGLIYPPFSNIRKISANIAANVAAKAYEL 563 (592)
Q Consensus 524 LA~~v~--~~~~~~g~l~P~~~~ir~vs~~VA~aVa~~A~~~ 563 (592)
+.+.+. .+.+..-.+-|-+.++|+-+..|...-.+.+.+.
T Consensus 318 I~e~~~~f~~w~~~~~~~p~I~~lr~~~~~i~~~el~r~~~~ 359 (414)
T PRK13940 318 IVKSLEEYLEKEKAIISNSAIKELFQKADGLVDLSLEKSLAK 359 (414)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 111111 1134456788999999998888888888888754
No 44
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.31 E-value=0.064 Score=56.45 Aligned_cols=85 Identities=15% Similarity=0.306 Sum_probs=70.1
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCc
Q 007703 309 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (592)
Q Consensus 309 GTaaV~LAgll~Alr~~g~~l~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~ 387 (592)
+-.-+|-+|++.-++..+.+|++.+++++|+|. .|..+|.+|.. .| ..+++++++.
T Consensus 136 ~~~PcTp~ai~~ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~-----~g-------atVtv~~s~t----------- 192 (286)
T PRK14175 136 TFVPCTPLGIMEILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQ-----KN-------ASVTILHSRS----------- 192 (286)
T ss_pred CCCCCcHHHHHHHHHHcCCCCCCCEEEEECCCchhHHHHHHHHHH-----CC-------CeEEEEeCCc-----------
Confidence 345678889999999999999999999999988 99999999864 24 4577777641
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007703 388 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (592)
Q Consensus 388 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 431 (592)
.+|.+.+++ .|++|...+.++.|+++.++
T Consensus 193 -------------~~l~~~~~~--ADIVIsAvg~p~~i~~~~vk 221 (286)
T PRK14175 193 -------------KDMASYLKD--ADVIVSAVGKPGLVTKDVVK 221 (286)
T ss_pred -------------hhHHHHHhh--CCEEEECCCCCcccCHHHcC
Confidence 257788886 99999999999999998763
No 45
>PLN00106 malate dehydrogenase
Probab=94.93 E-value=0.15 Score=54.33 Aligned_cols=118 Identities=25% Similarity=0.333 Sum_probs=79.5
Q ss_pred HHHHHHHHHhCCCcccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhc
Q 007703 316 AGVVAALKLIGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA 394 (592)
Q Consensus 316 Agll~Alr~~g~~l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA 394 (592)
|.-|.|+|..|..-. .||+|+|| |..|.-+|..|+. .|+ ...+.|+|.+- ..+-.-+|.+-. .+.
T Consensus 4 ~~~~~~~~~~~~~~~-~KV~IiGaaG~VG~~~a~~l~~-----~~~-----~~el~L~Di~~--~~g~a~Dl~~~~-~~~ 69 (323)
T PLN00106 4 ASSLRACRAKGGAPG-FKVAVLGAAGGIGQPLSLLMKM-----NPL-----VSELHLYDIAN--TPGVAADVSHIN-TPA 69 (323)
T ss_pred hhhhhccccccCCCC-CEEEEECCCCHHHHHHHHHHHh-----CCC-----CCEEEEEecCC--CCeeEchhhhCC-cCc
Confidence 445778888887665 59999999 9999999987764 244 25799999865 111111132211 111
Q ss_pred ccc--CCCCCHHHHhcccCCcEEEeccCCCCC--------------CCHHHHHHHHccCCCCceEEecCCCC
Q 007703 395 HEH--EPVNNLLDAVKVIKPTILIGSSGVGRT--------------FTKEVIEAMASFNEVKPLILALSNPT 450 (592)
Q Consensus 395 ~~~--~~~~~L~e~V~~vkPtvLIG~S~~~g~--------------Ft~evv~~Ma~~~e~rPIIFaLSNPt 450 (592)
+-. ....++.+++++ .|++|=+.+.+.. -.+++++.+.+++. +.||+.-|||.
T Consensus 70 ~i~~~~~~~d~~~~l~~--aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p-~aivivvSNPv 138 (323)
T PLN00106 70 QVRGFLGDDQLGDALKG--ADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCP-NALVNIISNPV 138 (323)
T ss_pred eEEEEeCCCCHHHHcCC--CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEeCCCc
Confidence 111 123467888887 8888866665421 24567888889999 99999999999
No 46
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=94.51 E-value=0.08 Score=54.92 Aligned_cols=103 Identities=19% Similarity=0.177 Sum_probs=62.7
Q ss_pred CceeccCCcchHHHHHHHHHHHHHHhCC--CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCc
Q 007703 300 HLVFNDDIQGTASVVLAGVVAALKLIGG--TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (592)
Q Consensus 300 ~~~FNDDiQGTaaV~LAgll~Alr~~g~--~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GL 377 (592)
..=+|-|. .|++.+++..+. ++++++++++|||.||-.|+..|.. .|. ++|+++++.
T Consensus 100 l~G~NTD~--------~G~~~~l~~~~~~~~~~~k~vlvlGaGGaarai~~aL~~-----~G~------~~i~I~nRt-- 158 (282)
T TIGR01809 100 WKGDNTDW--------DGIAGALANIGKFEPLAGFRGLVIGAGGTSRAAVYALAS-----LGV------TDITVINRN-- 158 (282)
T ss_pred EEEecCCH--------HHHHHHHHhhCCccccCCceEEEEcCcHHHHHHHHHHHH-----cCC------CeEEEEeCC--
Confidence 44566664 356777776663 6889999999999998888777654 365 789999873
Q ss_pred ccCCCccCCchhchhhcccc--CCCC---CHHHHhcccCCcEEEeccCCCCCCCHHHH
Q 007703 378 IVSSRKDSLQHFKKPWAHEH--EPVN---NLLDAVKVIKPTILIGSSGVGRTFTKEVI 430 (592)
Q Consensus 378 v~~~R~~~l~~~k~~fA~~~--~~~~---~L~e~V~~vkPtvLIG~S~~~g~Ft~evv 430 (592)
.+|.+.|.+ .|.... .... .+.+++. ++|++|.++..+-.++.+.+
T Consensus 159 --~~ka~~La~---~~~~~~~~~~~~~~~~~~~~~~--~~DiVInaTp~g~~~~~~~l 209 (282)
T TIGR01809 159 --PDKLSRLVD---LGVQVGVITRLEGDSGGLAIEK--AAEVLVSTVPADVPADYVDL 209 (282)
T ss_pred --HHHHHHHHH---HhhhcCcceeccchhhhhhccc--CCCEEEECCCCCCCCCHHHh
Confidence 222222221 111100 0111 2223333 58999999887755554433
No 47
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=94.48 E-value=0.11 Score=55.97 Aligned_cols=95 Identities=19% Similarity=0.326 Sum_probs=63.3
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhccc----cCCCCCHH
Q 007703 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE----HEPVNNLL 404 (592)
Q Consensus 329 l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~----~~~~~~L~ 404 (592)
+...+++|+|+|.+|.++++.+.. .|. ++.++|++ ..| +......|... ..+...|.
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~-----lGa-------~V~v~d~~----~~~---~~~l~~~~g~~v~~~~~~~~~l~ 225 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANG-----LGA-------TVTILDIN----IDR---LRQLDAEFGGRIHTRYSNAYEIE 225 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHH-----CCC-------eEEEEECC----HHH---HHHHHHhcCceeEeccCCHHHHH
Confidence 567889999999999999988764 262 48888874 111 11222222211 11123577
Q ss_pred HHhcccCCcEEEeccCC-----CCCCCHHHHHHHHccCCCCceEEecCC
Q 007703 405 DAVKVIKPTILIGSSGV-----GRTFTKEVIEAMASFNEVKPLILALSN 448 (592)
Q Consensus 405 e~V~~vkPtvLIG~S~~-----~g~Ft~evv~~Ma~~~e~rPIIFaLSN 448 (592)
++++. .|++|.+... +.++|++.++.|.+ +.+|+-+|-
T Consensus 226 ~~l~~--aDvVI~a~~~~g~~~p~lit~~~l~~mk~----g~vIvDva~ 268 (370)
T TIGR00518 226 DAVKR--ADLLIGAVLIPGAKAPKLVSNSLVAQMKP----GAVIVDVAI 268 (370)
T ss_pred HHHcc--CCEEEEccccCCCCCCcCcCHHHHhcCCC----CCEEEEEec
Confidence 88874 8999987633 44689999999864 778888774
No 48
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=94.20 E-value=0.24 Score=53.41 Aligned_cols=122 Identities=11% Similarity=0.163 Sum_probs=71.8
Q ss_pred chHHHHHHHHcCCCceeccCCcchHHHHHHH--HHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhh
Q 007703 287 HNAFELLAKYGTTHLVFNDDIQGTASVVLAG--VVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEE 364 (592)
Q Consensus 287 ~~Af~lL~ryr~~~~~FNDDiQGTaaV~LAg--ll~Alr~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~ee 364 (592)
..||..=+|-|.+.-. |+++|.++. ...+ +.. .+|++.+++|+|||..|--+|+.|.. .|.
T Consensus 136 ~~A~~~aKrVRteT~I------~~~~vSv~s~av~~~-~~~-~~l~~k~vLvIGaGem~~l~a~~L~~-----~g~---- 198 (338)
T PRK00676 136 QKALKEGKVFRSKGGA------PYAEVTIESVVQQEL-RRR-QKSKKASLLFIGYSEINRKVAYYLQR-----QGY---- 198 (338)
T ss_pred HHHHHHHHHHhhhcCC------CCCCcCHHHHHHHHH-HHh-CCccCCEEEEEcccHHHHHHHHHHHH-----cCC----
Confidence 4556555666653211 444444443 2323 333 56999999999999998777766654 365
Q ss_pred hcCcEEEEccCCcccCCCccCCchhchhhccccCCCCCHH-HHhc-ccCCcEEEec----cCCCCCCCHHHHHHHHccCC
Q 007703 365 TRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLL-DAVK-VIKPTILIGS----SGVGRTFTKEVIEAMASFNE 438 (592)
Q Consensus 365 A~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~-e~V~-~vkPtvLIG~----S~~~g~Ft~evv~~Ma~~~e 438 (592)
++|+++.+.-. ..+|.. +. +++. ..+.|++|=. +++.-..|.+.++. ..+
T Consensus 199 --~~i~v~nRt~~------------~~~~~~-------~~~~~~~~~~~~DvVIs~t~~Tas~~p~i~~~~~~~---~~~ 254 (338)
T PRK00676 199 --SRITFCSRQQL------------TLPYRT-------VVREELSFQDPYDVIFFGSSESAYAFPHLSWESLAD---IPD 254 (338)
T ss_pred --CEEEEEcCCcc------------ccchhh-------hhhhhhhcccCCCEEEEcCCcCCCCCceeeHHHHhh---ccC
Confidence 67998887531 122321 10 1121 1368999964 33334667766553 222
Q ss_pred CCceEEecCCCCC
Q 007703 439 VKPLILALSNPTS 451 (592)
Q Consensus 439 ~rPIIFaLSNPt~ 451 (592)
| ++|=||+|-.
T Consensus 255 -r-~~iDLAvPRd 265 (338)
T PRK00676 255 -R-IVFDFNVPRT 265 (338)
T ss_pred -c-EEEEecCCCC
Confidence 4 9999999984
No 49
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=94.14 E-value=0.12 Score=52.94 Aligned_cols=130 Identities=22% Similarity=0.301 Sum_probs=88.4
Q ss_pred CCcchHHHHHHHHHHHHHHhCCC-cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCcc
Q 007703 306 DIQGTASVVLAGVVAALKLIGGT-LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD 384 (592)
Q Consensus 306 DiQGTaaV~LAgll~Alr~~g~~-l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~ 384 (592)
--+-||-=+..++-.+++..+.. +++.|++|-|.|..|...|+.|.+. |. +=+-+-|++|.|++..+-
T Consensus 6 ~~~aTg~GV~~~~~~~~~~~~~~~l~g~~v~IqGfG~VG~~~a~~l~~~-----Ga------~vv~vsD~~G~i~~~~Gl 74 (244)
T PF00208_consen 6 RSEATGYGVAYAIEAALEHLGGDSLEGKRVAIQGFGNVGSHAARFLAEL-----GA------KVVAVSDSSGAIYDPDGL 74 (244)
T ss_dssp TTTHHHHHHHHHHHHHHHHTTCHSSTTCEEEEEESSHHHHHHHHHHHHT-----TE------EEEEEEESSEEEEETTEE
T ss_pred CCcchHHHHHHHHHHHHHHcCCCCcCCCEEEEECCCHHHHHHHHHHHHc-----CC------EEEEEecCceEEEcCCCc
Confidence 34567777888889999996766 9999999999999999999988763 53 345667888888865421
Q ss_pred CCchhchhhccccCCCCCHH-----------H--HhcccCCcEEEeccCCCCCCCHHHHH-HHHccCCCCceEEecCC-C
Q 007703 385 SLQHFKKPWAHEHEPVNNLL-----------D--AVKVIKPTILIGSSGVGRTFTKEVIE-AMASFNEVKPLILALSN-P 449 (592)
Q Consensus 385 ~l~~~k~~fA~~~~~~~~L~-----------e--~V~~vkPtvLIG~S~~~g~Ft~evv~-~Ma~~~e~rPIIFaLSN-P 449 (592)
+++...+-..+.......+. + .+-.++.|+||=+ +.++.+|++.+. .+.+ . -+||.--+| |
T Consensus 75 d~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~il~~~~DiliP~-A~~~~I~~~~~~~~i~~--~-akiIvegAN~p 150 (244)
T PF00208_consen 75 DVEELLRIKEERGSRVDDYPLESPDGAEYIPNDDEILSVDCDILIPC-ALGNVINEDNAPSLIKS--G-AKIIVEGANGP 150 (244)
T ss_dssp HHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHCHGGTSSSSEEEEE-SSSTSBSCHHHCHCHHT--T--SEEEESSSSS
T ss_pred hHHHHHHHHHHhCCcccccccccccceeEeccccccccccccEEEEc-CCCCeeCHHHHHHHHhc--c-CcEEEeCcchh
Confidence 11111111111111011111 1 3455799999988 668899999999 7764 3 569999998 5
Q ss_pred C
Q 007703 450 T 450 (592)
Q Consensus 450 t 450 (592)
+
T Consensus 151 ~ 151 (244)
T PF00208_consen 151 L 151 (244)
T ss_dssp B
T ss_pred c
Confidence 5
No 50
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=93.83 E-value=0.4 Score=46.80 Aligned_cols=119 Identities=18% Similarity=0.276 Sum_probs=74.2
Q ss_pred cchHHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCc
Q 007703 308 QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (592)
Q Consensus 308 QGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~ 387 (592)
.||+--++-|++ |.++..|...++|++|-|--|-|+|+.+... | -++.++|.+
T Consensus 3 yG~g~S~~d~i~---r~t~~~l~Gk~vvV~GYG~vG~g~A~~lr~~-----G-------a~V~V~e~D------------ 55 (162)
T PF00670_consen 3 YGTGQSLVDGIM---RATNLMLAGKRVVVIGYGKVGKGIARALRGL-----G-------ARVTVTEID------------ 55 (162)
T ss_dssp HHHHHHHHHHHH---HHH-S--TTSEEEEE--SHHHHHHHHHHHHT-----T--------EEEEE-SS------------
T ss_pred cccchhHHHHHH---hcCceeeCCCEEEEeCCCcccHHHHHHHhhC-----C-------CEEEEEECC------------
Confidence 467766777766 5788999999999999999999999988653 5 367766653
Q ss_pred hhchhhcc-ccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHccCCCCceEEecCCCCCCCCCCHHHHh
Q 007703 388 HFKKPWAH-EHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVKPLILALSNPTSQSECTAEEAY 461 (592)
Q Consensus 388 ~~k~~fA~-~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~e~rPIIFaLSNPt~~aEct~e~A~ 461 (592)
|.+.-=|+ +.-+..++.|+++. +|++|-+++...+.+.|.++.|.. .-|+.-..- ..-|+.-+..-
T Consensus 56 Pi~alqA~~dGf~v~~~~~a~~~--adi~vtaTG~~~vi~~e~~~~mkd----gail~n~Gh--~d~Eid~~~L~ 122 (162)
T PF00670_consen 56 PIRALQAAMDGFEVMTLEEALRD--ADIFVTATGNKDVITGEHFRQMKD----GAILANAGH--FDVEIDVDALE 122 (162)
T ss_dssp HHHHHHHHHTT-EEE-HHHHTTT---SEEEE-SSSSSSB-HHHHHHS-T----TEEEEESSS--STTSBTHHHHH
T ss_pred hHHHHHhhhcCcEecCHHHHHhh--CCEEEECCCCccccCHHHHHHhcC----CeEEeccCc--CceeEeecccc
Confidence 22211122 22223579999986 999999999888999999999985 455543332 23666666543
No 51
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=93.80 E-value=0.13 Score=56.75 Aligned_cols=105 Identities=20% Similarity=0.352 Sum_probs=67.3
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhc-CCChhhhcCcEEEEccCCcccCCCccCCchhchhhccc-cCC-----CCCHH
Q 007703 332 HRFLFLGAGEAGTGIAELIALEISKQT-KAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEP-----VNNLL 404 (592)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~-G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~-~~~-----~~~L~ 404 (592)
.||+|+||||+ -.-.|+..+.+.. .++ -+.|||+|-+ .+|-+.+...-+.+++. ..+ ..++.
T Consensus 1 ~KI~iIGgGS~---~tp~li~~l~~~~~~l~----~~ei~L~Did----~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD~~ 69 (425)
T cd05197 1 VKIAIIGGGSS---FTPELVSGLLKTPEELP----ISEVTLYDID----EERLDIILTIAKRYVEEVGADIKFEKTMDLE 69 (425)
T ss_pred CEEEEECCchH---hHHHHHHHHHcChhhCC----CCEEEEEcCC----HHHHHHHHHHHHHHHHhhCCCeEEEEeCCHH
Confidence 38999999995 4444555444322 342 3789999975 44422122222223222 112 25799
Q ss_pred HHhcccCCcEEEe--------------------------ccCCCCCCC--------HHHHHHHHccCCCCceEEecCCCC
Q 007703 405 DAVKVIKPTILIG--------------------------SSGVGRTFT--------KEVIEAMASFNEVKPLILALSNPT 450 (592)
Q Consensus 405 e~V~~vkPtvLIG--------------------------~S~~~g~Ft--------~evv~~Ma~~~e~rPIIFaLSNPt 450 (592)
||++. +|.+|- +.|.||.|. .++++.|.++|. .-+|+-.|||.
T Consensus 70 ~Al~g--ADfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~P-~a~lin~TNP~ 146 (425)
T cd05197 70 DAIID--ADFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLSP-DAWYLNFTNPA 146 (425)
T ss_pred HHhCC--CCEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhCC-CcEEEecCChH
Confidence 99987 777772 234455554 388999999999 99999999998
No 52
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=93.68 E-value=0.1 Score=44.40 Aligned_cols=95 Identities=13% Similarity=0.250 Sum_probs=61.9
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEE-ccCCcccCCCccCCchhchhhccccCCCCCHHHHhcccC
Q 007703 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLV-DSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 411 (592)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lv-D~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vk 411 (592)
||.|+|+|..|..+++.+... |. ...+|+++ +++ .+.+.+.++.|.... -..+..|+++.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~-----g~----~~~~v~~~~~r~-------~~~~~~~~~~~~~~~-~~~~~~~~~~~-- 61 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLAS-----GI----KPHEVIIVSSRS-------PEKAAELAKEYGVQA-TADDNEEAAQE-- 61 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHT-----TS-----GGEEEEEEESS-------HHHHHHHHHHCTTEE-ESEEHHHHHHH--
T ss_pred CEEEECCCHHHHHHHHHHHHC-----CC----CceeEEeeccCc-------HHHHHHHHHhhcccc-ccCChHHhhcc--
Confidence 789999999999999888763 54 34678855 553 122333333332110 01268899995
Q ss_pred CcEEEeccCCCCCCCHHHHHHHHccCCCCceEEecCCC
Q 007703 412 PTILIGSSGVGRTFTKEVIEAMASFNEVKPLILALSNP 449 (592)
Q Consensus 412 PtvLIG~S~~~g~Ft~evv~~Ma~~~e~rPIIFaLSNP 449 (592)
+|++| ++-.+ ..-+++++.+....+ ..+|..++||
T Consensus 62 advvi-lav~p-~~~~~v~~~i~~~~~-~~~vis~~ag 96 (96)
T PF03807_consen 62 ADVVI-LAVKP-QQLPEVLSEIPHLLK-GKLVISIAAG 96 (96)
T ss_dssp TSEEE-E-S-G-GGHHHHHHHHHHHHT-TSEEEEESTT
T ss_pred CCEEE-EEECH-HHHHHHHHHHhhccC-CCEEEEeCCC
Confidence 88887 55545 456678888855667 8899988886
No 53
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=93.50 E-value=0.24 Score=47.85 Aligned_cols=54 Identities=31% Similarity=0.441 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHHHHHhCCCcccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 310 TASVVLAGVVAALKLIGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 310 TaaV~LAgll~Alr~~g~~l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
||+.+++.+..+++..|.++++.+++++|+ |..|..++..+.. .| .++++++++
T Consensus 7 ta~aav~~~~~~l~~~~~~l~~~~vlVlGgtG~iG~~~a~~l~~-----~g-------~~V~l~~R~ 61 (194)
T cd01078 7 TAAAAVAAAGKALELMGKDLKGKTAVVLGGTGPVGQRAAVLLAR-----EG-------ARVVLVGRD 61 (194)
T ss_pred HHHHHHHHHHHHHHHhCcCCCCCEEEEECCCCHHHHHHHHHHHH-----CC-------CEEEEEcCC
Confidence 778888888888888899999999999997 9888888877754 24 468888764
No 54
>PRK08605 D-lactate dehydrogenase; Validated
Probab=93.03 E-value=1.4 Score=47.02 Aligned_cols=153 Identities=10% Similarity=0.173 Sum_probs=92.7
Q ss_pred HHHHHHHHHhcCCCeeeeeecCCCchHHHHHHHHcCCCceeccC-C--cchHHHHHHHHHHHHHH---------------
Q 007703 263 DEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDD-I--QGTASVVLAGVVAALKL--------------- 324 (592)
Q Consensus 263 defv~av~~~fGp~~lIqfEDf~~~~Af~lL~ryr~~~~~FNDD-i--QGTaaV~LAgll~Alr~--------------- 324 (592)
.|++++..+ .|-+ +|+.-=-+..| .++-.--+..+.+.|-- . +.+|=-+++.+|+.+|.
T Consensus 59 ~~~l~~~~~-~~lk-~I~~~~~G~d~-id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~ 135 (332)
T PRK08605 59 EAIYKLLNE-LGIK-QIAQRSAGFDT-YDLELATKYNLIISNVPSYSPESIAEFTVTQAINLVRHFNQIQTKVREHDFRW 135 (332)
T ss_pred HHHHHhhhh-cCce-EEEEcccccch-hhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHhcChHHHHHHHHhCCccc
Confidence 466666554 1111 25544333333 34333334677777742 2 34566678888876652
Q ss_pred ----hCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhccccCCC
Q 007703 325 ----IGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPV 400 (592)
Q Consensus 325 ----~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~ 400 (592)
.|..|.+++|.|+|.|..|..+|+.+... .|+ ++|.+|+.. . . ....++ ...
T Consensus 136 ~~~~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~----~g~-------~V~~~d~~~----~--~----~~~~~~---~~~ 191 (332)
T PRK08605 136 EPPILSRSIKDLKVAVIGTGRIGLAVAKIFAKG----YGS-------DVVAYDPFP----N--A----KAATYV---DYK 191 (332)
T ss_pred ccccccceeCCCEEEEECCCHHHHHHHHHHHhc----CCC-------EEEEECCCc----c--H----hHHhhc---ccc
Confidence 13468899999999999999999998532 243 688888742 1 0 011111 123
Q ss_pred CCHHHHhcccCCcEEEecc----CCCCCCCHHHHHHHHccCCCCceEEecCC
Q 007703 401 NNLLDAVKVIKPTILIGSS----GVGRTFTKEVIEAMASFNEVKPLILALSN 448 (592)
Q Consensus 401 ~~L~e~V~~vkPtvLIG~S----~~~g~Ft~evv~~Ma~~~e~rPIIFaLSN 448 (592)
.+|.|+++. .|+++=.. ...++|+++.++.|.+ ..++.=.|.
T Consensus 192 ~~l~ell~~--aDvIvl~lP~t~~t~~li~~~~l~~mk~----gailIN~sR 237 (332)
T PRK08605 192 DTIEEAVEG--ADIVTLHMPATKYNHYLFNADLFKHFKK----GAVFVNCAR 237 (332)
T ss_pred CCHHHHHHh--CCEEEEeCCCCcchhhhcCHHHHhcCCC----CcEEEECCC
Confidence 579999986 88888442 1235677777877764 777776665
No 55
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.58 E-value=3.9 Score=42.41 Aligned_cols=121 Identities=19% Similarity=0.272 Sum_probs=65.0
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhcc------c---------
Q 007703 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH------E--------- 396 (592)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~------~--------- 396 (592)
+||.|+|+|..|.+||..++.. |. +++++|.+- +.+...+....+ +
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~-----g~-------~V~~~d~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARK-----GL-------QVVLIDVME-------GALERARGVIERALGVYAPLGIASAGMG 65 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhC-----CC-------eEEEEECCH-------HHHHHHHHHHHHHHHHhhhcccHHHHhh
Confidence 5799999999999999988652 53 688888641 112221111000 0
Q ss_pred -cCCCCCHHHHhcccCCcEEEeccCCCCC-CCHHHHHHHHccCCCCceEEecCCCCCCCCCCHHHHhccccCcEEEecCC
Q 007703 397 -HEPVNNLLDAVKVIKPTILIGSSGVGRT-FTKEVIEAMASFNEVKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGS 474 (592)
Q Consensus 397 -~~~~~~L~e~V~~vkPtvLIG~S~~~g~-Ft~evv~~Ma~~~e~rPIIFaLSNPt~~aEct~e~A~~wt~G~aifAsGS 474 (592)
.....++.++++. .|++| ++..... -.+++++.+..... .-.|+. ||..+. +.++.-++.....-|..+-
T Consensus 66 ~i~~~~~~~~~~~~--aDlVi-~av~~~~~~~~~v~~~l~~~~~-~~~ii~-s~tsg~---~~~~l~~~~~~~~~~ig~h 137 (311)
T PRK06130 66 RIRMEAGLAAAVSG--ADLVI-EAVPEKLELKRDVFARLDGLCD-PDTIFA-TNTSGL---PITAIAQAVTRPERFVGTH 137 (311)
T ss_pred ceEEeCCHHHHhcc--CCEEE-EeccCcHHHHHHHHHHHHHhCC-CCcEEE-ECCCCC---CHHHHHhhcCCcccEEEEc
Confidence 0112467777765 67766 4443321 35667777776555 444443 443332 2445444443333344445
Q ss_pred CCCcc
Q 007703 475 PFDPF 479 (592)
Q Consensus 475 PF~pV 479 (592)
||.|.
T Consensus 138 ~~~p~ 142 (311)
T PRK06130 138 FFTPA 142 (311)
T ss_pred cCCCC
Confidence 66555
No 56
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=92.56 E-value=0.84 Score=51.75 Aligned_cols=228 Identities=18% Similarity=0.237 Sum_probs=114.3
Q ss_pred CeeEEEEecCceecccCCCC--CCccccchhhHHHHHHhcCCCCCceeeEEeecCCCc----hhcccCcccccccccCCC
Q 007703 181 SIQVIVVTDGERILGLGDLG--CQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNN----EQLLKDEFYIGLRQRRAT 254 (592)
Q Consensus 181 ~v~viVVTDG~rILGLGDlG--~~GmgI~iGKl~LYta~gGI~P~~~LPI~LDvGTnN----e~LL~Dp~YlG~r~~R~~ 254 (592)
..+|+|=++.+--.|.-|-- ..|..|.-.+ .+| . . .|+|-|..-. +.|.++-.++|+-|+-..
T Consensus 30 G~~V~VE~gAG~~a~fsD~~Y~~aGA~I~~~~-~v~-~---~------diilkV~~P~~~e~~~l~~g~~li~~l~p~~~ 98 (509)
T PRK09424 30 GFEVVVESGAGQLASFDDAAYREAGAEIVDGA-AVW-Q---S------DIILKVNAPSDDEIALLREGATLVSFIWPAQN 98 (509)
T ss_pred CCEEEEeCCCCcCCCCCHHHHHHCCCEEecCc-ccc-c---C------CEEEEeCCCCHHHHHhcCCCCEEEEEeCcccC
Confidence 45777777655555555521 1122232111 222 1 1 2444444332 245566777777776322
Q ss_pred hhhhHHHHHHHHHHHHHhcCCCeeeeeecCCC-chHHHHHHHHcCCCceeccCCcchHHHHHHHHHHHHHHhC-----CC
Q 007703 255 GQEYAELLDEFMSAVKQNYGEKVLIQFEDFAN-HNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIG-----GT 328 (592)
Q Consensus 255 geeY~~~idefv~av~~~fGp~~lIqfEDf~~-~~Af~lL~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g-----~~ 328 (592)
.++++.+.+ + .=.+|-+|.+-. .+|. +-+..--+-.|-|=-+|..|+-.-.--..| ..
T Consensus 99 ----~~l~~~l~~----~--~it~ia~e~vpr~sraq------~~d~lssma~IAGy~Av~~aa~~~~~~~~g~~taaG~ 162 (509)
T PRK09424 99 ----PELLEKLAA----R--GVTVLAMDAVPRISRAQ------SLDALSSMANIAGYRAVIEAAHEFGRFFTGQITAAGK 162 (509)
T ss_pred ----HHHHHHHHH----c--CCEEEEeecccccccCC------CcccccchhhhhHHHHHHHHHHHhcccCCCceeccCC
Confidence 233333332 1 234566776642 1111 112233344556655555544322111111 13
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCcc---CC------------chhchhh
Q 007703 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD---SL------------QHFKKPW 393 (592)
Q Consensus 329 l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~---~l------------~~~k~~f 393 (592)
....|++|+|||.+|++.+..... .| | +++.+|.+ ..|.+ ++ ......|
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~-----lG-----A--~V~a~D~~----~~rle~aeslGA~~v~i~~~e~~~~~~gy 226 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGS-----LG-----A--IVRAFDTR----PEVAEQVESMGAEFLELDFEEEGGSGDGY 226 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHH-----CC-----C--EEEEEeCC----HHHHHHHHHcCCeEEEeccccccccccch
Confidence 458999999999999888765543 36 2 47777764 11110 00 0011123
Q ss_pred ccccCCC------CCHHHHhcccCCcEEEeccCCCC-----CCCHHHHHHHHccCCCCceEEecCCCC-CCCCCCH
Q 007703 394 AHEHEPV------NNLLDAVKVIKPTILIGSSGVGR-----TFTKEVIEAMASFNEVKPLILALSNPT-SQSECTA 457 (592)
Q Consensus 394 A~~~~~~------~~L~e~V~~vkPtvLIG~S~~~g-----~Ft~evv~~Ma~~~e~rPIIFaLSNPt-~~aEct~ 457 (592)
++...+. ..+.+.++ +.|++|.+++.+| +++++.++.|.+ .-+|.=++.+. ..+|++.
T Consensus 227 a~~~s~~~~~~~~~~~~~~~~--gaDVVIetag~pg~~aP~lit~~~v~~mkp----GgvIVdvg~~~GG~~e~t~ 296 (509)
T PRK09424 227 AKVMSEEFIKAEMALFAEQAK--EVDIIITTALIPGKPAPKLITAEMVASMKP----GSVIVDLAAENGGNCELTV 296 (509)
T ss_pred hhhcchhHHHHHHHHHHhccC--CCCEEEECCCCCcccCcchHHHHHHHhcCC----CCEEEEEccCCCCCccccc
Confidence 3321110 01122222 4999999999876 679999999985 55566677653 3345553
No 57
>PRK08328 hypothetical protein; Provisional
Probab=92.49 E-value=0.074 Score=53.71 Aligned_cols=120 Identities=18% Similarity=0.194 Sum_probs=73.0
Q ss_pred HHHHcCCCceeccCCcchHHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEE
Q 007703 293 LAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLV 372 (592)
Q Consensus 293 L~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lv 372 (592)
++||..++..|..+. -.+|++.||+++|+|..|.-||+.|+.+ |+ ++|.++
T Consensus 7 ~~ry~Rq~~~~g~~~------------------q~~L~~~~VlIiG~GGlGs~ia~~La~~-----Gv------g~i~lv 57 (231)
T PRK08328 7 LERYDRQIMIFGVEG------------------QEKLKKAKVAVVGVGGLGSPVAYYLAAA-----GV------GRILLI 57 (231)
T ss_pred HHHHhhHHHhcCHHH------------------HHHHhCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEE
Confidence 578877776665422 2457788999999999999999999764 76 789999
Q ss_pred ccCCcccCCCccCCchhchhhccccCCC----CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHccCCCCceEE-ecC
Q 007703 373 DSKGLIVSSRKDSLQHFKKPWAHEHEPV----NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVKPLIL-ALS 447 (592)
Q Consensus 373 D~~GLv~~~R~~~l~~~k~~fA~~~~~~----~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~e~rPIIF-aLS 447 (592)
|.+= +.. .+|..+ --|-.+.-.. ....+.++...|++.|=... +.++++-+...-+ + .-+|| +.-
T Consensus 58 D~D~-ve~---sNL~Rq-~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~~~--~~~~~~~~~~~l~--~-~D~Vid~~d 127 (231)
T PRK08328 58 DEQT-PEL---SNLNRQ-ILHWEEDLGKNPKPLSAKWKLERFNSDIKIETFV--GRLSEENIDEVLK--G-VDVIVDCLD 127 (231)
T ss_pred cCCc-cCh---hhhccc-cccChhhcCchHHHHHHHHHHHHhCCCCEEEEEe--ccCCHHHHHHHHh--c-CCEEEECCC
Confidence 9861 121 124321 1111111111 12345567778998876533 3467665554332 3 55666 556
Q ss_pred CCCC
Q 007703 448 NPTS 451 (592)
Q Consensus 448 NPt~ 451 (592)
|+.+
T Consensus 128 ~~~~ 131 (231)
T PRK08328 128 NFET 131 (231)
T ss_pred CHHH
Confidence 7653
No 58
>PRK05086 malate dehydrogenase; Provisional
Probab=92.47 E-value=0.71 Score=48.82 Aligned_cols=105 Identities=22% Similarity=0.277 Sum_probs=66.2
Q ss_pred ceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhcc-ccCCCCCHHHHhcc
Q 007703 332 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-EHEPVNNLLDAVKV 409 (592)
Q Consensus 332 ~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~-~~~~~~~L~e~V~~ 409 (592)
.||+|+|| |..|..+|.++... .+. ...+.++|++-. ..+..-++.+. ..... ......++.+++++
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~----~~~-----~~el~L~d~~~~-~~g~alDl~~~-~~~~~i~~~~~~d~~~~l~~ 69 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQ----LPA-----GSELSLYDIAPV-TPGVAVDLSHI-PTAVKIKGFSGEDPTPALEG 69 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC----CCC-----ccEEEEEecCCC-CcceehhhhcC-CCCceEEEeCCCCHHHHcCC
Confidence 48999999 99999999877432 122 256889997522 11100012211 00000 00012467788876
Q ss_pred cCCcEEEeccCCC---CC-----------CCHHHHHHHHccCCCCceEEecCCCC
Q 007703 410 IKPTILIGSSGVG---RT-----------FTKEVIEAMASFNEVKPLILALSNPT 450 (592)
Q Consensus 410 vkPtvLIG~S~~~---g~-----------Ft~evv~~Ma~~~e~rPIIFaLSNPt 450 (592)
.|++|=+.|.. |. ..++++++|.+++. +.+|+-.|||.
T Consensus 70 --~DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~-~~ivivvsNP~ 121 (312)
T PRK05086 70 --ADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCP-KACIGIITNPV 121 (312)
T ss_pred --CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEccCch
Confidence 88888666553 21 45689999999999 99999999998
No 59
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.33 E-value=0.5 Score=49.90 Aligned_cols=83 Identities=16% Similarity=0.169 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHhCCCcccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchh
Q 007703 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (592)
Q Consensus 311 aaV~LAgll~Alr~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~ 389 (592)
.-+|-+|++.=++..+.++++++++++|.| ..|.-+|.++.. .|. .+.+++++ .
T Consensus 137 ~PcTp~avi~lL~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~-----~gA-------tVtv~hs~-------t------ 191 (285)
T PRK14191 137 VPATPMGVMRLLKHYHIEIKGKDVVIIGASNIVGKPLAMLMLN-----AGA-------SVSVCHIL-------T------ 191 (285)
T ss_pred CCCcHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHH-----CCC-------EEEEEeCC-------c------
Confidence 346778888888999999999999999999 999999999864 253 35556442 1
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007703 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (592)
Q Consensus 390 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 431 (592)
.+|.+.+++ .|++|...+.++.+++++|+
T Consensus 192 -----------~~l~~~~~~--ADIvV~AvG~p~~i~~~~vk 220 (285)
T PRK14191 192 -----------KDLSFYTQN--ADIVCVGVGKPDLIKASMVK 220 (285)
T ss_pred -----------HHHHHHHHh--CCEEEEecCCCCcCCHHHcC
Confidence 246788886 99999999999999999984
No 60
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=92.23 E-value=0.3 Score=51.15 Aligned_cols=49 Identities=31% Similarity=0.413 Sum_probs=39.5
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 316 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 316 Agll~Alr~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
.|++.+++..+.++++.+++++|||-|+-+|+-.+.. .|+ ++|+++++.
T Consensus 109 ~Gf~~~l~~~~~~~~~k~vlvlGaGGaarAi~~~l~~-----~g~------~~i~i~nRt 157 (288)
T PRK12749 109 TGHIRAIKESGFDIKGKTMVLLGAGGASTAIGAQGAI-----EGL------KEIKLFNRR 157 (288)
T ss_pred HHHHHHHHhcCCCcCCCEEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC
Confidence 4677888888888999999999999998877665543 365 789999984
No 61
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.22 E-value=0.28 Score=50.48 Aligned_cols=32 Identities=38% Similarity=0.576 Sum_probs=26.4
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
+||.|+|+|..|.+||..++.. | .+++++|.+
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~-----G-------~~V~~~d~~ 33 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVS-----G-------FQTTLVDIK 33 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhC-----C-------CcEEEEeCC
Confidence 4799999999999999988653 5 468888874
No 62
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=92.14 E-value=0.77 Score=52.32 Aligned_cols=163 Identities=22% Similarity=0.223 Sum_probs=109.2
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcc--cCCCccCCchhchhhccccCCCCCHHHHh
Q 007703 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI--VSSRKDSLQHFKKPWAHEHEPVNNLLDAV 407 (592)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv--~~~R~~~l~~~k~~fA~~~~~~~~L~e~V 407 (592)
.+--++|+|+|..|+|||.-++. .|+ ++.||+++-+- |++|..+|=+--..|+.. -+.+=..|++
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~-----RGl-------~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~-~e~~lvrEal 77 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAG-----RGL-------KVALVEKGDLASGTSSRSTKLIHGGLRYLEQ-YEFSLVREAL 77 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHh-----CCC-------eEEEEecCcccCcccCccccCccchhhhhhh-cchHHHHHHH
Confidence 55679999999999999998765 487 57899988776 556655566655666643 1222133555
Q ss_pred cccCCcEEEeccCCCCCCCHHHHHHHHccCC-CCceEEecCCCCCCCCCCHHHHhccccCcEEEecCCCCCcceeCCeee
Q 007703 408 KVIKPTILIGSSGVGRTFTKEVIEAMASFNE-VKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVF 486 (592)
Q Consensus 408 ~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~e-~rPIIFaLSNPt~~aEct~e~A~~wt~G~aifAsGSPF~pV~~~G~~~ 486 (592)
+. .+++..+|.|+- .-|.+||..+=+ ++
T Consensus 78 ~E-----------------r~vL~~~APH~v~p~~~~lp~~~~~-------~~--------------------------- 106 (532)
T COG0578 78 AE-----------------REVLLRIAPHLVEPLPFLLPHLPGL-------RD--------------------------- 106 (532)
T ss_pred HH-----------------HHHHHHhCccccccCcCeEeccCCc-------cc---------------------------
Confidence 53 588888988764 155666655421 01
Q ss_pred CccCCcccccchhhhHHHHHhCC-ccc--CHHHHHHHHHHHHcccCccccCCCcccCCCCCchhhHHHHHHHHHHHHHHc
Q 007703 487 VPGQANNAYIFPGFGLGLVISGA-IRV--HDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRKISANIAANVAAKAYEL 563 (592)
Q Consensus 487 ~p~Q~NN~yiFPGiglG~~~s~a-~~I--td~m~~aAA~aLA~~v~~~~~~~g~l~P~~~~ir~vs~~VA~aVa~~A~~~ 563 (592)
-.+++.|+.+...+++. +.. +..+..+++..+.-.+.++.+..+..||.-.. .+ ++...++++.|.+.
T Consensus 107 ------~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~v-dd--aRLv~~~a~~A~~~ 177 (532)
T COG0578 107 ------AWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVV-DD--ARLVAANARDAAEH 177 (532)
T ss_pred ------chHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEcccee-ch--HHHHHHHHHHHHhc
Confidence 25678899999999993 222 22233335667777777777766888997663 32 36778899999988
Q ss_pred CC
Q 007703 564 GV 565 (592)
Q Consensus 564 G~ 565 (592)
|-
T Consensus 178 Ga 179 (532)
T COG0578 178 GA 179 (532)
T ss_pred cc
Confidence 84
No 63
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=92.14 E-value=0.26 Score=54.29 Aligned_cols=125 Identities=15% Similarity=0.274 Sum_probs=73.2
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHH-hcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhccc-cCC-----CCCHH
Q 007703 332 HRFLFLGAGEAGTGIAELIALEISK-QTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEP-----VNNLL 404 (592)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~-~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~-~~~-----~~~L~ 404 (592)
.||+|+||||. -.-+++ ..+.+ ...++ -+.|||+|-+- ..|-+.+...-+.+.+. ..+ ..++.
T Consensus 1 ~KI~iIGaGS~--~tp~li-~~l~~~~~~l~----~~ei~L~Did~---~~rl~~v~~~~~~~~~~~~~~~~v~~t~d~~ 70 (419)
T cd05296 1 MKLTIIGGGSS--YTPELI-EGLIRRYEELP----VTELVLVDIDE---EEKLEIVGALAKRMVKKAGLPIKVHLTTDRR 70 (419)
T ss_pred CEEEEECCchH--hHHHHH-HHHHhccccCC----CCEEEEecCCh---HHHHHHHHHHHHHHHHhhCCCeEEEEeCCHH
Confidence 48999999996 333444 44433 22332 37899999862 22211111111122221 111 25799
Q ss_pred HHhcccCCcEEEeccCCCC--------------------------CC--------CHHHHHHHHccCCCCceEEecCCCC
Q 007703 405 DAVKVIKPTILIGSSGVGR--------------------------TF--------TKEVIEAMASFNEVKPLILALSNPT 450 (592)
Q Consensus 405 e~V~~vkPtvLIG~S~~~g--------------------------~F--------t~evv~~Ma~~~e~rPIIFaLSNPt 450 (592)
||++. +|.+|=.-.+|| .| =.++++.|.++|. .-+|+=.|||.
T Consensus 71 ~al~g--adfVi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~P-da~lin~TNP~ 147 (419)
T cd05296 71 EALEG--ADFVFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELAP-DAWLINFTNPA 147 (419)
T ss_pred HHhCC--CCEEEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHCC-CeEEEEecCHH
Confidence 99987 787774444433 11 2378888899999 99999999998
Q ss_pred CCCCCCHHHHhccccCcEEEecC
Q 007703 451 SQSECTAEEAYTWSKGRAIFASG 473 (592)
Q Consensus 451 ~~aEct~e~A~~wt~G~aifAsG 473 (592)
. ...+-++++++-| +|.+|
T Consensus 148 ~---ivt~a~~k~~~~r-viGlc 166 (419)
T cd05296 148 G---IVTEAVLRHTGDR-VIGLC 166 (419)
T ss_pred H---HHHHHHHHhccCC-EEeeC
Confidence 3 4445556667444 44443
No 64
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=92.11 E-value=0.45 Score=49.62 Aligned_cols=38 Identities=11% Similarity=-0.136 Sum_probs=28.4
Q ss_pred eCccCCcccccchhhhHHHHHhCCcccCHHHHHHHHHH
Q 007703 486 FVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEA 523 (592)
Q Consensus 486 ~~p~Q~NN~yiFPGiglG~~~s~a~~Itd~m~~aAA~a 523 (592)
..||+..|-+.++.+.=++.++..--++.+-+..+...
T Consensus 184 ~~~G~i~nrl~~a~~~EA~~l~~~g~~~~~~id~~~~~ 221 (308)
T PRK06129 184 EIDGFVLNRLQGALLREAFRLVADGVASVDDIDAVIRD 221 (308)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 35677878888888888888887777877777766543
No 65
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=92.09 E-value=0.39 Score=49.96 Aligned_cols=58 Identities=29% Similarity=0.309 Sum_probs=42.2
Q ss_pred CCceeccCCcchHHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 299 THLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 299 ~~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
+..-+|-| -.|++.+++..+..+++++++|+|||-+|-+||..+.. .|. ++|+++++.
T Consensus 102 ~l~G~NTD--------~~G~~~~l~~~~~~~~~k~vlI~GAGGagrAia~~La~-----~G~------~~V~I~~R~ 159 (289)
T PRK12548 102 KLTGHITD--------GLGFVRNLREHGVDVKGKKLTVIGAGGAATAIQVQCAL-----DGA------KEITIFNIK 159 (289)
T ss_pred EEEEEecC--------HHHHHHHHHhcCCCcCCCEEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC
Confidence 34566777 45678888877778889999999998666666555543 364 679999874
No 66
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=92.05 E-value=0.27 Score=48.58 Aligned_cols=38 Identities=29% Similarity=0.391 Sum_probs=33.5
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
.+|.+.||+++|+|..|.-+|+.|+.+ |+ ++|+++|.+
T Consensus 17 ~kl~~~~VlviG~GglGs~ia~~La~~-----Gv------~~i~lvD~d 54 (202)
T TIGR02356 17 QRLLNSHVLIIGAGGLGSPAALYLAGA-----GV------GTIVIVDDD 54 (202)
T ss_pred HHhcCCCEEEECCCHHHHHHHHHHHHc-----CC------CeEEEecCC
Confidence 478899999999999999999988764 76 799999987
No 67
>PLN02928 oxidoreductase family protein
Probab=91.86 E-value=1.3 Score=47.67 Aligned_cols=139 Identities=16% Similarity=0.182 Sum_probs=85.6
Q ss_pred cchHHHHHHHHHHHHHH----------------hCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEE
Q 007703 308 QGTASVVLAGVVAALKL----------------IGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICL 371 (592)
Q Consensus 308 QGTaaV~LAgll~Alr~----------------~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~l 371 (592)
+.+|--+++.+|+.+|. .+..|.++++.|+|.|..|..+|+.+... |+ +++.
T Consensus 120 ~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~~~~~~l~gktvGIiG~G~IG~~vA~~l~af-----G~-------~V~~ 187 (347)
T PLN02928 120 ASCAEMAIYLMLGLLRKQNEMQISLKARRLGEPIGDTLFGKTVFILGYGAIGIELAKRLRPF-----GV-------KLLA 187 (347)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHcCCcccccccCCCCCEEEEECCCHHHHHHHHHHhhC-----CC-------EEEE
Confidence 34566667777766663 24579999999999999999999998642 64 6777
Q ss_pred EccCCcccCCCccCCchhc----hhhccccCCCCCHHHHhcccCCcEEEec----cCCCCCCCHHHHHHHHccCCCCceE
Q 007703 372 VDSKGLIVSSRKDSLQHFK----KPWAHEHEPVNNLLDAVKVIKPTILIGS----SGVGRTFTKEVIEAMASFNEVKPLI 443 (592)
Q Consensus 372 vD~~GLv~~~R~~~l~~~k----~~fA~~~~~~~~L~e~V~~vkPtvLIG~----S~~~g~Ft~evv~~Ma~~~e~rPII 443 (592)
+|+.. .......+. .+ ..+........+|.|+++. .|+++-. ....+.|+++.+..|.+ ..+|
T Consensus 188 ~dr~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~ell~~--aDiVvl~lPlt~~T~~li~~~~l~~Mk~----ga~l 258 (347)
T PLN02928 188 TRRSW--TSEPEDGLL-IPNGDVDDLVDEKGGHEDIYEFAGE--ADIVVLCCTLTKETAGIVNDEFLSSMKK----GALL 258 (347)
T ss_pred ECCCC--Chhhhhhhc-cccccccccccccCcccCHHHHHhh--CCEEEECCCCChHhhcccCHHHHhcCCC----CeEE
Confidence 88741 000000000 00 0111111134689999987 8999854 23357999999999975 6677
Q ss_pred EecCCCCCCCCCCHHHHhc--cccCcEEEe
Q 007703 444 LALSNPTSQSECTAEEAYT--WSKGRAIFA 471 (592)
Q Consensus 444 FaLSNPt~~aEct~e~A~~--wt~G~aifA 471 (592)
.=.|. .++-=|+|+- -..|+.-.|
T Consensus 259 INvaR----G~lVde~AL~~AL~~g~i~gA 284 (347)
T PLN02928 259 VNIAR----GGLLDYDAVLAALESGHLGGL 284 (347)
T ss_pred EECCC----ccccCHHHHHHHHHcCCeeEE
Confidence 76654 4444444432 135665444
No 68
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=91.82 E-value=2.3 Score=47.67 Aligned_cols=163 Identities=15% Similarity=0.188 Sum_probs=85.4
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchh------------chhhccc--c
Q 007703 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF------------KKPWAHE--H 397 (592)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~------------k~~fA~~--~ 397 (592)
.||.|+|+|..|.+||..++.+ |. ++.++|..- +..+.+... +.+++.. .
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~-----G~-------~V~v~D~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i 68 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLA-----GI-------DVAVFDPHP----EAERIIGEVLANAERAYAMLTDAPLPPEGRL 68 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhC-----CC-------eEEEEeCCH----HHHHHHHHHHHHHHHHHhhhccchhhhhhce
Confidence 4799999999999999998753 64 678888731 110001100 0001110 1
Q ss_pred CCCCCHHHHhcccCCcEEEeccCCCCC-CCHHHHHHHHccCCCCceEEecCCCCCCCCCCHHHHhcc--ccCcEEEecCC
Q 007703 398 EPVNNLLDAVKVIKPTILIGSSGVGRT-FTKEVIEAMASFNEVKPLILALSNPTSQSECTAEEAYTW--SKGRAIFASGS 474 (592)
Q Consensus 398 ~~~~~L~e~V~~vkPtvLIG~S~~~g~-Ft~evv~~Ma~~~e~rPIIFaLSNPt~~aEct~e~A~~w--t~G~aifAsGS 474 (592)
....++.|+++. .|++| .+..... +.+++.+.+.+... .-.|+..| |+-.. +.+.-+. ..|+++.+ -
T Consensus 69 ~~~~~~~ea~~~--aD~Vi-eavpe~~~vk~~l~~~l~~~~~-~~~iI~Ss--Tsgi~--~s~l~~~~~~~~r~~~~--h 138 (495)
T PRK07531 69 TFCASLAEAVAG--ADWIQ-ESVPERLDLKRRVLAEIDAAAR-PDALIGSS--TSGFL--PSDLQEGMTHPERLFVA--H 138 (495)
T ss_pred EeeCCHHHHhcC--CCEEE-EcCcCCHHHHHHHHHHHHhhCC-CCcEEEEc--CCCCC--HHHHHhhcCCcceEEEE--e
Confidence 123578889876 78887 5544432 45566666666555 44566544 32222 3333222 24455544 5
Q ss_pred CCCcceeCCeeeCccCCcccccchhhhHHHHHhCCcccCHHHHHHHHHHHHcccCccccCCCcccC
Q 007703 475 PFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYP 540 (592)
Q Consensus 475 PF~pV~~~G~~~~p~Q~NN~yiFPGiglG~~~s~a~~Itd~m~~aAA~aLA~~v~~~~~~~g~l~P 540 (592)
||.|+.+. | .+.+++....+++.+.. +..+.+.+...-..-+...|
T Consensus 139 P~nP~~~~---------------~----Lvevv~g~~t~~e~~~~-~~~~~~~lG~~~v~~~k~~~ 184 (495)
T PRK07531 139 PYNPVYLL---------------P----LVELVGGGKTSPETIRR-AKEILREIGMKPVHIAKEID 184 (495)
T ss_pred cCCCcccC---------------c----eEEEcCCCCCCHHHHHH-HHHHHHHcCCEEEeecCCCc
Confidence 88877422 2 22344445556666544 55555554433333333333
No 69
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=91.79 E-value=0.23 Score=49.34 Aligned_cols=108 Identities=22% Similarity=0.261 Sum_probs=65.6
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhcccc-CC-CCCHH
Q 007703 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH-EP-VNNLL 404 (592)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~-~~-~~~L~ 404 (592)
.+|++.||+|+|+|..|.+||..|+.+ |+ +++.++|.+=+ ..+ +|+.+ ..+..+- .. ...+.
T Consensus 17 ~~L~~~~V~IvG~GglGs~ia~~La~~-----Gv------g~i~lvD~D~v-e~s---NL~Rq-~~~~~~iG~~Ka~~~~ 80 (200)
T TIGR02354 17 QKLEQATVAICGLGGLGSNVAINLARA-----GI------GKLILVDFDVV-EPS---NLNRQ-QYKASQVGEPKTEALK 80 (200)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHc-----CC------CEEEEECCCEE-ccc---ccccc-cCChhhCCCHHHHHHH
Confidence 458899999999999999999999764 76 78999999732 221 35442 1122111 11 12466
Q ss_pred HHhcccCCcEEEeccCCCCCCCHHHHHHHHccCCCCceEEecCCCCCCCC
Q 007703 405 DAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVKPLILALSNPTSQSE 454 (592)
Q Consensus 405 e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~e~rPIIFaLSNPt~~aE 454 (592)
+.++.+.|++-|-. ...-++++-+...-+ ...=||-+.-||..+.+
T Consensus 81 ~~l~~inp~~~i~~--~~~~i~~~~~~~~~~--~~DlVi~a~Dn~~~k~~ 126 (200)
T TIGR02354 81 ENISEINPYTEIEA--YDEKITEENIDKFFK--DADIVCEAFDNAEAKAM 126 (200)
T ss_pred HHHHHHCCCCEEEE--eeeeCCHhHHHHHhc--CCCEEEECCCCHHHHHH
Confidence 77777888765432 233566666655432 21234446567665544
No 70
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=91.75 E-value=0.13 Score=48.15 Aligned_cols=105 Identities=22% Similarity=0.377 Sum_probs=64.3
Q ss_pred ceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC-CcccCCCccCCchhchhhccccCCCCCHHHHhcc
Q 007703 332 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK-GLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKV 409 (592)
Q Consensus 332 ~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~-GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~ 409 (592)
.||.|+|| |..|..+|-+|+.. |+ -+.|.|+|.+ .... +..-+|.+..-+.-++..-..+..+.++.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~-----~l-----~~ei~L~D~~~~~~~-g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~ 69 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQ-----GL-----ADEIVLIDINEDKAE-GEALDLSHASAPLPSPVRITSGDYEALKD 69 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHT-----TT-----SSEEEEEESSHHHHH-HHHHHHHHHHHGSTEEEEEEESSGGGGTT
T ss_pred CEEEEECCCChHHHHHHHHHHhC-----CC-----CCceEEeccCcccce-eeehhhhhhhhhccccccccccccccccc
Confidence 38999999 99999999988763 55 2559999997 2111 10001222211111111111245577775
Q ss_pred cCCcEEEeccCCC---CC-----------CCHHHHHHHHccCCCCceEEecCCCC
Q 007703 410 IKPTILIGSSGVG---RT-----------FTKEVIEAMASFNEVKPLILALSNPT 450 (592)
Q Consensus 410 vkPtvLIG~S~~~---g~-----------Ft~evv~~Ma~~~e~rPIIFaLSNPt 450 (592)
.|++|=+.+.+ |- +-+++.+.+.+++. ..+++-.|||.
T Consensus 70 --aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p-~~~vivvtNPv 121 (141)
T PF00056_consen 70 --ADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAP-DAIVIVVTNPV 121 (141)
T ss_dssp --ESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHST-TSEEEE-SSSH
T ss_pred --ccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhCC-ccEEEEeCCcH
Confidence 89988555443 21 22467777788899 99999999997
No 71
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.52 E-value=0.7 Score=48.79 Aligned_cols=83 Identities=17% Similarity=0.193 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchh
Q 007703 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (592)
Q Consensus 311 aaV~LAgll~Alr~~g~~l~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~ 389 (592)
.-+|-+|++..++..+.+|++.+++++|-|. .|.-+|.||.. .| ..+.+|+|+
T Consensus 139 ~PcTp~av~~ll~~~~i~l~Gk~vvViGrs~iVG~Pla~lL~~-----~~-------atVtv~hs~-------------- 192 (285)
T PRK10792 139 RPCTPRGIMTLLERYGIDTYGLNAVVVGASNIVGRPMSLELLL-----AG-------CTVTVCHRF-------------- 192 (285)
T ss_pred CCCCHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHH-----CC-------CeEEEEECC--------------
Confidence 4668888999999999999999999999998 99999998864 24 356777663
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007703 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (592)
Q Consensus 390 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 431 (592)
.++|.+.+++ .|++|-+.|.++.|+.+.|+
T Consensus 193 ----------T~~l~~~~~~--ADIvi~avG~p~~v~~~~vk 222 (285)
T PRK10792 193 ----------TKNLRHHVRN--ADLLVVAVGKPGFIPGEWIK 222 (285)
T ss_pred ----------CCCHHHHHhh--CCEEEEcCCCcccccHHHcC
Confidence 1358888886 99999999999999998886
No 72
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=91.43 E-value=0.4 Score=50.16 Aligned_cols=49 Identities=16% Similarity=0.186 Sum_probs=38.6
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 316 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 316 Agll~Alr~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
.|++.+++..+.++++.+++++|||-||-+|+-.|.+ .|. ++|+++|+.
T Consensus 112 ~Gf~~~L~~~~~~~~~k~vlilGaGGaarAi~~aL~~-----~g~------~~i~i~nR~ 160 (283)
T PRK14027 112 SGFGRGMEEGLPNAKLDSVVQVGAGGVGNAVAYALVT-----HGV------QKLQVADLD 160 (283)
T ss_pred HHHHHHHHhcCcCcCCCeEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEcCC
Confidence 3567777765557888999999999999988877754 365 789999884
No 73
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=91.19 E-value=1.5 Score=47.89 Aligned_cols=157 Identities=12% Similarity=0.113 Sum_probs=96.9
Q ss_pred hHHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchh
Q 007703 310 TASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (592)
Q Consensus 310 TaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~ 389 (592)
.|=-+++.+++..|..|..|.+.++.|+|.|..|..+|+.+... |+ +++.+|... .. . .
T Consensus 95 VAE~v~~~lL~l~r~~g~~l~gktvGIIG~G~IG~~va~~l~a~-----G~-------~V~~~Dp~~------~~-~-~- 153 (381)
T PRK00257 95 VVDYVLGSLLTLAEREGVDLAERTYGVVGAGHVGGRLVRVLRGL-----GW-------KVLVCDPPR------QE-A-E- 153 (381)
T ss_pred HHHHHHHHHHHHhcccCCCcCcCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEECCcc------cc-c-c-
Confidence 34457899999999999999999999999999999999988643 65 577888631 10 0 0
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEe---cc-----CCCCCCCHHHHHHHHccCCCCceEEecCCCCCCCCCCHHHHh
Q 007703 390 KKPWAHEHEPVNNLLDAVKVIKPTILIG---SS-----GVGRTFTKEVIEAMASFNEVKPLILALSNPTSQSECTAEEAY 461 (592)
Q Consensus 390 k~~fA~~~~~~~~L~e~V~~vkPtvLIG---~S-----~~~g~Ft~evv~~Ma~~~e~rPIIFaLSNPt~~aEct~e~A~ 461 (592)
......+|.|+++. .|+++= ++ ..-++|+++.+..|.+ ..++.=.|. -++--++|+
T Consensus 154 ------~~~~~~~l~ell~~--aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~----gailIN~aR----G~vVde~AL 217 (381)
T PRK00257 154 ------GDGDFVSLERILEE--CDVISLHTPLTKEGEHPTRHLLDEAFLASLRP----GAWLINASR----GAVVDNQAL 217 (381)
T ss_pred ------cCccccCHHHHHhh--CCEEEEeCcCCCCccccccccCCHHHHhcCCC----CeEEEECCC----CcccCHHHH
Confidence 01123578898875 787761 11 2347999999999976 677776654 444444444
Q ss_pred cc--ccCcEEEecCCCC--CcceeCCeeeCccCCcccccchhhhHHHHHhC
Q 007703 462 TW--SKGRAIFASGSPF--DPFEYNGKVFVPGQANNAYIFPGFGLGLVISG 508 (592)
Q Consensus 462 ~w--t~G~aifAsGSPF--~pV~~~G~~~~p~Q~NN~yiFPGiglG~~~s~ 508 (592)
.- ..|+...|-=-=| +|. .+.... ..|+.+-|=++-....++
T Consensus 218 ~~aL~~g~i~~a~LDV~e~EP~-~~~~L~----~~nvi~TPHiAg~s~e~~ 263 (381)
T PRK00257 218 REALLSGEDLDAVLDVWEGEPQ-IDLELA----DLCTIATPHIAGYSLDGK 263 (381)
T ss_pred HHHHHhCCCcEEEEeCCCCCCC-CChhhh----hCCEEEcCccccCCHHHH
Confidence 21 2454332211111 111 111111 137888887775555444
No 74
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=91.17 E-value=0.43 Score=48.63 Aligned_cols=126 Identities=21% Similarity=0.316 Sum_probs=75.9
Q ss_pred EEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhccc--cCCCCCHHHHhccc
Q 007703 334 FLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE--HEPVNNLLDAVKVI 410 (592)
Q Consensus 334 iv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~--~~~~~~L~e~V~~v 410 (592)
|.|+|| |..|.++|..++.. |. .....++|+|.+.-..+.....|.+...++ .. -....++.+++++
T Consensus 1 I~IIGagG~vG~~ia~~l~~~-----~~---~~~~el~L~D~~~~~l~~~~~dl~~~~~~~-~~~~i~~~~d~~~~~~~- 70 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADG-----SV---LLAIELVLYDIDEEKLKGVAMDLQDAVEPL-ADIKVSITDDPYEAFKD- 70 (263)
T ss_pred CEEECCCChHHHHHHHHHHhC-----CC---CcceEEEEEeCCcccchHHHHHHHHhhhhc-cCcEEEECCchHHHhCC-
Confidence 579999 99999999887652 42 123689999986411111111132222222 11 1112467888886
Q ss_pred CCcEEEeccCCCCC--------------CCHHHHHHHHccCCCCceEEecCCCCCCCCCCHHHHhccc--cCcEEEecCC
Q 007703 411 KPTILIGSSGVGRT--------------FTKEVIEAMASFNEVKPLILALSNPTSQSECTAEEAYTWS--KGRAIFASGS 474 (592)
Q Consensus 411 kPtvLIG~S~~~g~--------------Ft~evv~~Ma~~~e~rPIIFaLSNPt~~aEct~e~A~~wt--~G~aifAsGS 474 (592)
.|++|=+.+.++. .-+++.+.|.+++. ..+++-.|||. .....-+++++ .-+-+|++|.
T Consensus 71 -aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p-~a~~i~~tNP~---d~~t~~~~~~sg~~~~kviG~~~ 145 (263)
T cd00650 71 -ADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSP-DAWIIVVSNPV---DIITYLVWRYSGLPKEKVIGLGT 145 (263)
T ss_pred -CCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEecCcH---HHHHHHHHHHhCCCchhEEEeec
Confidence 8888865554332 24688888999999 99999999998 33444455553 1223555553
No 75
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=90.82 E-value=0.84 Score=47.77 Aligned_cols=125 Identities=14% Similarity=0.230 Sum_probs=73.8
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhcccc--CCCCCHHHHhccc
Q 007703 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH--EPVNNLLDAVKVI 410 (592)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~--~~~~~L~e~V~~v 410 (592)
||.|+|+|.+|..+|..++. .|+ ...|.++|++-=..++-..+|.+.. .+.... -...+. +.++
T Consensus 2 kI~IIGaG~vG~~~a~~l~~-----~g~-----~~ei~l~D~~~~~~~~~a~dL~~~~-~~~~~~~~i~~~~~-~~l~-- 67 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVN-----QGI-----ADELVLIDINEEKAEGEALDLEDAL-AFLPSPVKIKAGDY-SDCK-- 67 (306)
T ss_pred EEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCcchhhHhHhhHHHHh-hccCCCeEEEcCCH-HHhC--
Confidence 89999999999999998764 265 2579999985211111111121111 111100 011234 3455
Q ss_pred CCcEEEeccCCCCC--------------CCHHHHHHHHccCCCCceEEecCCCCCCCCCCHHHHhccccC--cEEEecCC
Q 007703 411 KPTILIGSSGVGRT--------------FTKEVIEAMASFNEVKPLILALSNPTSQSECTAEEAYTWSKG--RAIFASGS 474 (592)
Q Consensus 411 kPtvLIG~S~~~g~--------------Ft~evv~~Ma~~~e~rPIIFaLSNPt~~aEct~e~A~~wt~G--~aifAsGS 474 (592)
..|++|=+++.+.. .=+++.+.|.+++. .-+|+-.|||.. +...-++++++= +-||.+|.
T Consensus 68 ~aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~-~~~vivvsNP~d---~~~~~~~~~~g~p~~~v~g~gt 143 (306)
T cd05291 68 DADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGF-DGIFLVASNPVD---VITYVVQKLSGLPKNRVIGTGT 143 (306)
T ss_pred CCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEecChHH---HHHHHHHHHhCcCHHHEeeccc
Confidence 49999977776521 12567788888999 999999999983 444444444211 23666664
Q ss_pred C
Q 007703 475 P 475 (592)
Q Consensus 475 P 475 (592)
-
T Consensus 144 ~ 144 (306)
T cd05291 144 S 144 (306)
T ss_pred h
Confidence 4
No 76
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=90.80 E-value=1.9 Score=40.83 Aligned_cols=82 Identities=21% Similarity=0.215 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhc
Q 007703 312 SVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK 390 (592)
Q Consensus 312 aV~LAgll~Alr~~g~~l~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k 390 (592)
-.+..|++.-++..|.+++.++++++|.+. .|.-+|.+|. + .| ..+.++|++.
T Consensus 9 p~t~~a~~~ll~~~~~~~~gk~v~VvGrs~~vG~pla~lL~----~-~g-------atV~~~~~~t-------------- 62 (140)
T cd05212 9 SPVAKAVKELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQ----R-DG-------ATVYSCDWKT-------------- 62 (140)
T ss_pred ccHHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHH----H-CC-------CEEEEeCCCC--------------
Confidence 357788899999999999999999999864 4444555443 3 35 3566776631
Q ss_pred hhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007703 391 KPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (592)
Q Consensus 391 ~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 431 (592)
++|.+.++. .|++|-..+.++.|+.+.|+
T Consensus 63 ----------~~l~~~v~~--ADIVvsAtg~~~~i~~~~ik 91 (140)
T cd05212 63 ----------IQLQSKVHD--ADVVVVGSPKPEKVPTEWIK 91 (140)
T ss_pred ----------cCHHHHHhh--CCEEEEecCCCCccCHHHcC
Confidence 267888987 99999999999999999986
No 77
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=90.73 E-value=1.6 Score=44.04 Aligned_cols=102 Identities=20% Similarity=0.293 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHhC---------CCcccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCC
Q 007703 313 VVLAGVVAALKLIG---------GTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSR 382 (592)
Q Consensus 313 V~LAgll~Alr~~g---------~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R 382 (592)
+|-.|++.=|+..+ .+++.++++++|-+ ..|.-+|.||.. .| ..+.+||++|.....+
T Consensus 35 CTp~avi~lL~~~~i~~~~~~~~~~l~GK~vvVIGrS~iVGkPla~lL~~-----~~-------AtVti~~~~~~~~~~~ 102 (197)
T cd01079 35 CTPLAIVKILEFLGIYNKILPYGNRLYGKTITIINRSEVVGRPLAALLAN-----DG-------ARVYSVDINGIQVFTR 102 (197)
T ss_pred CCHHHHHHHHHHhCCcccccccCCCCCCCEEEEECCCccchHHHHHHHHH-----CC-------CEEEEEecCccccccc
Confidence 34455555555554 48999999999986 467778877754 24 4688999999887665
Q ss_pred ccCCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCC-CCHHHHH
Q 007703 383 KDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRT-FTKEVIE 431 (592)
Q Consensus 383 ~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~-Ft~evv~ 431 (592)
..++.+.+.+. .....+|.|.+++ +|++|-..+.++. ++.|+|+
T Consensus 103 ~~~~~hs~t~~---~~~~~~l~~~~~~--ADIVIsAvG~~~~~i~~d~ik 147 (197)
T cd01079 103 GESIRHEKHHV---TDEEAMTLDCLSQ--SDVVITGVPSPNYKVPTELLK 147 (197)
T ss_pred ccccccccccc---cchhhHHHHHhhh--CCEEEEccCCCCCccCHHHcC
Confidence 43332111100 0111248888987 9999999999998 8999986
No 78
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=90.68 E-value=0.092 Score=51.97 Aligned_cols=109 Identities=17% Similarity=0.306 Sum_probs=68.9
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhccc-cCC-----CCCHHHH
Q 007703 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEP-----VNNLLDA 406 (592)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~-~~~-----~~~L~e~ 406 (592)
||+|+||||+-. ..++...+.+...++ .+.|+|+|.+ ..|-+.+...-+.+++. ..+ ..++.||
T Consensus 1 KI~iIGaGS~~~--~~~l~~~l~~~~~l~----~~ei~L~Did----~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eA 70 (183)
T PF02056_consen 1 KITIIGAGSTYF--PLLLLGDLLRTEELS----GSEIVLMDID----EERLEIVERLARRMVEEAGADLKVEATTDRREA 70 (183)
T ss_dssp EEEEETTTSCCH--HHHHHHHHHCTTTST----EEEEEEE-SC----HHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHH
T ss_pred CEEEECCchHhh--HHHHHHHHhcCccCC----CcEEEEEcCC----HHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHH
Confidence 799999999854 455555555444453 4689999986 23311111222333332 122 2589999
Q ss_pred hcccCCcEEE---------------------eccC-------CCCCCC--------HHHHHHHHccCCCCceEEecCCCC
Q 007703 407 VKVIKPTILI---------------------GSSG-------VGRTFT--------KEVIEAMASFNEVKPLILALSNPT 450 (592)
Q Consensus 407 V~~vkPtvLI---------------------G~S~-------~~g~Ft--------~evv~~Ma~~~e~rPIIFaLSNPt 450 (592)
++. .|.+| |+-+ +||.|. .|+.+.|.++|. .--||=.+||.
T Consensus 71 l~g--ADfVi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~~~~P-dAw~iNytNP~ 147 (183)
T PF02056_consen 71 LEG--ADFVINQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIEELCP-DAWLINYTNPM 147 (183)
T ss_dssp HTT--ESEEEE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHHHHTT-TSEEEE-SSSH
T ss_pred hCC--CCEEEEEeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHHHhCC-CcEEEeccChH
Confidence 997 88888 3333 334432 588999999999 99999999998
Q ss_pred CCCCCC
Q 007703 451 SQSECT 456 (592)
Q Consensus 451 ~~aEct 456 (592)
+++|
T Consensus 148 --~~vt 151 (183)
T PF02056_consen 148 --GIVT 151 (183)
T ss_dssp --HHHH
T ss_pred --HHHH
Confidence 5555
No 79
>PTZ00325 malate dehydrogenase; Provisional
Probab=90.57 E-value=1.6 Score=46.74 Aligned_cols=106 Identities=22% Similarity=0.271 Sum_probs=67.6
Q ss_pred cccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhcc--ccCCCCCHHH
Q 007703 329 LAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH--EHEPVNNLLD 405 (592)
Q Consensus 329 l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~--~~~~~~~L~e 405 (592)
++-.||+|.|| |..|..+|..|+. .|+ ...+.|+|.+ .. .+-.-+|.+... ... ......+..+
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~-----~~~-----~~elvL~Di~-~~-~g~a~Dl~~~~~-~~~v~~~td~~~~~~ 72 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQ-----NPH-----VSELSLYDIV-GA-PGVAADLSHIDT-PAKVTGYADGELWEK 72 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhc-----CCC-----CCEEEEEecC-CC-cccccchhhcCc-CceEEEecCCCchHH
Confidence 34569999999 9999999987752 243 3679999983 21 111111322111 111 1111123467
Q ss_pred HhcccCCcEEEeccCCCCC--------------CCHHHHHHHHccCCCCceEEecCCCC
Q 007703 406 AVKVIKPTILIGSSGVGRT--------------FTKEVIEAMASFNEVKPLILALSNPT 450 (592)
Q Consensus 406 ~V~~vkPtvLIG~S~~~g~--------------Ft~evv~~Ma~~~e~rPIIFaLSNPt 450 (592)
+++. .|++|=+.+.+.. ..++++++|.+++. +.||+.-|||.
T Consensus 73 ~l~g--aDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~-~~iviv~SNPv 128 (321)
T PTZ00325 73 ALRG--ADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAP-KAIVGIVSNPV 128 (321)
T ss_pred HhCC--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEecCcH
Confidence 8887 8888755554322 45688999999999 99999999999
No 80
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=90.36 E-value=0.63 Score=48.02 Aligned_cols=88 Identities=23% Similarity=0.323 Sum_probs=53.7
Q ss_pred HHHHHHHHHH-hCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhh
Q 007703 315 LAGVVAALKL-IGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPW 393 (592)
Q Consensus 315 LAgll~Alr~-~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~f 393 (592)
-.|++++++. .+..+.+.+++|+|||.+|-+|+..+.. .|. ++++++++. .++ .......+
T Consensus 106 ~~G~~~~l~~~~~~~~~~k~vlVlGaGg~a~ai~~aL~~-----~g~------~~V~v~~R~----~~~---a~~l~~~~ 167 (278)
T PRK00258 106 GIGFVRALEERLGVDLKGKRILILGAGGAARAVILPLLD-----LGV------AEITIVNRT----VER---AEELAKLF 167 (278)
T ss_pred HHHHHHHHHhccCCCCCCCEEEEEcCcHHHHHHHHHHHH-----cCC------CEEEEEeCC----HHH---HHHHHHHh
Confidence 3456777764 5678999999999999888888877763 364 679999885 121 22222222
Q ss_pred cccc-CCC-CCHHHHhcccCCcEEEeccCCC
Q 007703 394 AHEH-EPV-NNLLDAVKVIKPTILIGSSGVG 422 (592)
Q Consensus 394 A~~~-~~~-~~L~e~V~~vkPtvLIG~S~~~ 422 (592)
.... -.. .++.+.+. +.|++|-++..+
T Consensus 168 ~~~~~~~~~~~~~~~~~--~~DivInaTp~g 196 (278)
T PRK00258 168 GALGKAELDLELQEELA--DFDLIINATSAG 196 (278)
T ss_pred hhccceeecccchhccc--cCCEEEECCcCC
Confidence 1110 011 12334444 489999887755
No 81
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=90.13 E-value=2.2 Score=44.58 Aligned_cols=33 Identities=21% Similarity=0.379 Sum_probs=26.6
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
..||.|+|+|..|.++|..+... | .+++++|+.
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~-----G-------~~V~~~~r~ 36 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASAN-----G-------HRVRVWSRR 36 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHC-----C-------CEEEEEeCC
Confidence 45899999999999999999763 5 357777764
No 82
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.12 E-value=1.2 Score=47.52 Aligned_cols=92 Identities=14% Similarity=0.279 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHhCCCcccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchh
Q 007703 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (592)
Q Consensus 311 aaV~LAgll~Alr~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~ 389 (592)
.-+|-.|++.=++..|.++++++|+|+|.| ..|..+|.+|... | ..+.+++++ .
T Consensus 139 ~PcTp~aii~lL~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~-----g-------atVtv~~~~--------t----- 193 (301)
T PRK14194 139 TPCTPSGCLRLLEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQA-----H-------CSVTVVHSR--------S----- 193 (301)
T ss_pred CCCcHHHHHHHHHHhCCCCCCCEEEEECCCCccHHHHHHHHHHC-----C-------CEEEEECCC--------C-----
Confidence 356777888888999999999999999996 9999999999752 5 356777653 1
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHccCCCCceEEecC
Q 007703 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVKPLILALS 447 (592)
Q Consensus 390 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~e~rPIIFaLS 447 (592)
.++.|++++ .|++|=.-+.++.+++++++ + .-||.=.|
T Consensus 194 -----------~~l~e~~~~--ADIVIsavg~~~~v~~~~ik------~-GaiVIDvg 231 (301)
T PRK14194 194 -----------TDAKALCRQ--ADIVVAAVGRPRLIDADWLK------P-GAVVIDVG 231 (301)
T ss_pred -----------CCHHHHHhc--CCEEEEecCChhcccHhhcc------C-CcEEEEec
Confidence 268888987 89999988888888887743 3 56676666
No 83
>PRK08223 hypothetical protein; Validated
Probab=90.04 E-value=0.6 Score=49.34 Aligned_cols=58 Identities=17% Similarity=0.086 Sum_probs=45.2
Q ss_pred HHHHHHHcCCCceeccCCcchHHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcE
Q 007703 290 FELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKI 369 (592)
Q Consensus 290 f~lL~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i 369 (592)
|..-++|..++..|..+-| .+|++.||+|+|+|..|.-+|..|+.+ |+ .+|
T Consensus 4 ~~~~~~ysRq~~~iG~e~Q------------------~kL~~s~VlIvG~GGLGs~va~~LA~a-----GV------G~i 54 (287)
T PRK08223 4 FDYDEAFCRNLGWITPTEQ------------------QRLRNSRVAIAGLGGVGGIHLLTLARL-----GI------GKF 54 (287)
T ss_pred ccHHHHHhhhhhhcCHHHH------------------HHHhcCCEEEECCCHHHHHHHHHHHHh-----CC------CeE
Confidence 6667777766655544322 568899999999999999999988875 87 789
Q ss_pred EEEccCC
Q 007703 370 CLVDSKG 376 (592)
Q Consensus 370 ~lvD~~G 376 (592)
.++|.+=
T Consensus 55 ~lvD~D~ 61 (287)
T PRK08223 55 TIADFDV 61 (287)
T ss_pred EEEeCCC
Confidence 9999873
No 84
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=89.85 E-value=0.44 Score=45.03 Aligned_cols=86 Identities=21% Similarity=0.338 Sum_probs=51.4
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhch--hhccc---cCC---CCCHH
Q 007703 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKK--PWAHE---HEP---VNNLL 404 (592)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~--~fA~~---~~~---~~~L~ 404 (592)
||.|+|||+.|+.+|..+... | .++.|.+++.-..+ .|...+. .|... .+. ..+|.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~-----g-------~~V~l~~~~~~~~~----~i~~~~~n~~~~~~~~l~~~i~~t~dl~ 64 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN-----G-------HEVTLWGRDEEQIE----EINETRQNPKYLPGIKLPENIKATTDLE 64 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC-----T-------EEEEEETSCHHHHH----HHHHHTSETTTSTTSBEETTEEEESSHH
T ss_pred CEEEECcCHHHHHHHHHHHHc-----C-------CEEEEEeccHHHHH----HHHHhCCCCCCCCCcccCcccccccCHH
Confidence 789999999999999988762 5 56777776531111 1111111 11110 111 25799
Q ss_pred HHhcccCCcEEEeccCCCCCCCHHHHHHHHccCC
Q 007703 405 DAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNE 438 (592)
Q Consensus 405 e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~e 438 (592)
+++++ .|++| +.. +-.+-+++++.++.+-+
T Consensus 65 ~a~~~--ad~Ii-iav-Ps~~~~~~~~~l~~~l~ 94 (157)
T PF01210_consen 65 EALED--ADIII-IAV-PSQAHREVLEQLAPYLK 94 (157)
T ss_dssp HHHTT---SEEE-E-S--GGGHHHHHHHHTTTSH
T ss_pred HHhCc--ccEEE-ecc-cHHHHHHHHHHHhhccC
Confidence 99986 77665 333 22557899999988653
No 85
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=89.78 E-value=0.77 Score=51.01 Aligned_cols=130 Identities=17% Similarity=0.271 Sum_probs=76.7
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHh-cCCChhhhcCcEEEEccCCcccCCCccCCchhchhhccc-cCC-----CCCHH
Q 007703 332 HRFLFLGAGEAGTGIAELIALEISKQ-TKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEP-----VNNLL 404 (592)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~-~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~-~~~-----~~~L~ 404 (592)
.||+|+||||+ -+-.|+..+.+. ..++ -+.|+|+|-+. +|-+.+...-+.+++. ..+ ..++.
T Consensus 1 ~KI~iIGaGS~---~tp~li~~l~~~~~~l~----~~ei~L~DId~----~rl~~v~~l~~~~~~~~g~~~~v~~Ttdr~ 69 (437)
T cd05298 1 FKIVIAGGGST---YTPGIVKSLLDRKEDFP----LRELVLYDIDA----ERQEKVAEAVKILFKENYPEIKFVYTTDPE 69 (437)
T ss_pred CeEEEECCcHH---HHHHHHHHHHhCcccCC----CCEEEEECCCH----HHHHHHHHHHHHHHHhhCCCeEEEEECCHH
Confidence 48999999996 555555555432 2342 37899999863 3322122222222221 112 25788
Q ss_pred HHhcccCCcEEE---------------------ec-----cCCCCCC--------CHHHHHHHHccCCCCceEEecCCCC
Q 007703 405 DAVKVIKPTILI---------------------GS-----SGVGRTF--------TKEVIEAMASFNEVKPLILALSNPT 450 (592)
Q Consensus 405 e~V~~vkPtvLI---------------------G~-----S~~~g~F--------t~evv~~Ma~~~e~rPIIFaLSNPt 450 (592)
||++. +|.+| |+ .|.||.| -.++++.|.++|. .-+++-.|||.
T Consensus 70 eAl~g--ADfVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~p-da~lin~tNP~ 146 (437)
T cd05298 70 EAFTD--ADFVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYSP-DAWILNYSNPA 146 (437)
T ss_pred HHhCC--CCEEEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHCC-CeEEEEecCcH
Confidence 99987 77776 22 1344433 2578888999999 99999999999
Q ss_pred CCCCCCHHHHhccccCcEEEecCCCCC
Q 007703 451 SQSECTAEEAYTWSKGRAIFASGSPFD 477 (592)
Q Consensus 451 ~~aEct~e~A~~wt~G~aifAsGSPF~ 477 (592)
..+|-.---.++.-|+|=-+-+|+.
T Consensus 147 --~~vt~~~~~~~~~~kviGlC~~~~~ 171 (437)
T cd05298 147 --AIVAEALRRLFPNARILNICDMPIA 171 (437)
T ss_pred --HHHHHHHHHHCCCCCEEEECCcHHH
Confidence 4444322111344466555555554
No 86
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=89.72 E-value=0.75 Score=49.91 Aligned_cols=102 Identities=22% Similarity=0.263 Sum_probs=62.5
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCC--------ccCCchhchhhccc--
Q 007703 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSR--------KDSLQHFKKPWAHE-- 396 (592)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R--------~~~l~~~k~~fA~~-- 396 (592)
.+|++.||+|+|+|..|.-+|..|+.+ |+ ++|.++|.+=+ ..+. .+++-..|..-|..
T Consensus 37 ~~l~~~~VliiG~GglG~~v~~~La~~-----Gv------g~i~ivD~D~v-e~sNL~RQ~l~~~~diG~~Ka~~~~~~l 104 (370)
T PRK05600 37 ERLHNARVLVIGAGGLGCPAMQSLASA-----GV------GTITLIDDDTV-DVSNIHRQILFGASDVGRPKVEVAAERL 104 (370)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEeCCEE-ccccccccccCChhHCCCHHHHHHHHHH
Confidence 678899999999999999999998764 76 78999998732 2111 00111122111110
Q ss_pred ---cCC---------C--CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHccCCCCceEEe
Q 007703 397 ---HEP---------V--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVKPLILA 445 (592)
Q Consensus 397 ---~~~---------~--~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~e~rPIIFa 445 (592)
.+. . .++.+.++. .|++|.++... =++-.|..++.... .|.|++
T Consensus 105 ~~~np~v~i~~~~~~i~~~~~~~~~~~--~DlVid~~Dn~--~~r~~in~~~~~~~-iP~v~~ 162 (370)
T PRK05600 105 KEIQPDIRVNALRERLTAENAVELLNG--VDLVLDGSDSF--ATKFLVADAAEITG-TPLVWG 162 (370)
T ss_pred HHHCCCCeeEEeeeecCHHHHHHHHhC--CCEEEECCCCH--HHHHHHHHHHHHcC-CCEEEE
Confidence 010 1 134556654 78888766532 14556666666666 888876
No 87
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=89.65 E-value=0.73 Score=48.54 Aligned_cols=48 Identities=38% Similarity=0.513 Sum_probs=38.8
Q ss_pred HHHHHHHHhC--CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 317 GVVAALKLIG--GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 317 gll~Alr~~g--~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
|+..+|+..+ ...+++++|++|||-|+.+|+-.|.+. |. ++|+++++.
T Consensus 110 G~~~~L~~~~~~~~~~~~~vlilGAGGAarAv~~aL~~~-----g~------~~i~V~NRt 159 (283)
T COG0169 110 GFLRALKEFGLPVDVTGKRVLILGAGGAARAVAFALAEA-----GA------KRITVVNRT 159 (283)
T ss_pred HHHHHHHhcCCCcccCCCEEEEECCcHHHHHHHHHHHHc-----CC------CEEEEEeCC
Confidence 5677888766 456689999999999999998887763 65 789999883
No 88
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=89.59 E-value=2.9 Score=45.82 Aligned_cols=116 Identities=15% Similarity=0.198 Sum_probs=81.5
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCch
Q 007703 309 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 388 (592)
Q Consensus 309 GTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~ 388 (592)
..|=-+++.+++..|..|..|.+.++.|+|.|..|.-+|+.+... |+ ++..+|.. +.+ ..
T Consensus 94 aVAE~~~~~lL~l~r~~g~~L~gktvGIIG~G~IG~~vA~~l~a~-----G~-------~V~~~dp~------~~~--~~ 153 (378)
T PRK15438 94 AVVEYVFSSLLMLAERDGFSLHDRTVGIVGVGNVGRRLQARLEAL-----GI-------KTLLCDPP------RAD--RG 153 (378)
T ss_pred HHHHHHHHHHHHHhccCCCCcCCCEEEEECcCHHHHHHHHHHHHC-----CC-------EEEEECCc------ccc--cc
Confidence 455567899999899889999999999999999999999988643 65 67778852 111 00
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEE---eccC-----CCCCCCHHHHHHHHccCCCCceEEecCCCCCCCCCCHHHH
Q 007703 389 FKKPWAHEHEPVNNLLDAVKVIKPTILI---GSSG-----VGRTFTKEVIEAMASFNEVKPLILALSNPTSQSECTAEEA 460 (592)
Q Consensus 389 ~k~~fA~~~~~~~~L~e~V~~vkPtvLI---G~S~-----~~g~Ft~evv~~Ma~~~e~rPIIFaLSNPt~~aEct~e~A 460 (592)
......+|.|+++. .|+++ -++. .-+.|+++.++.|.+ ..|++=.|. -+.-=|+|
T Consensus 154 -------~~~~~~~L~ell~~--sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~----gailIN~aR----G~vVDe~A 216 (378)
T PRK15438 154 -------DEGDFRSLDELVQE--ADILTFHTPLFKDGPYKTLHLADEKLIRSLKP----GAILINACR----GAVVDNTA 216 (378)
T ss_pred -------cccccCCHHHHHhh--CCEEEEeCCCCCCcccccccccCHHHHhcCCC----CcEEEECCC----chhcCHHH
Confidence 00123579999876 88887 1222 346899999999985 667775554 44444554
Q ss_pred h
Q 007703 461 Y 461 (592)
Q Consensus 461 ~ 461 (592)
+
T Consensus 217 L 217 (378)
T PRK15438 217 L 217 (378)
T ss_pred H
Confidence 4
No 89
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=89.48 E-value=5.8 Score=40.95 Aligned_cols=32 Identities=28% Similarity=0.447 Sum_probs=26.7
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
.+|.|+|+|..|.+||..++.. |. +++++|.+
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~-----G~-------~V~l~d~~ 35 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFART-----GY-------DVTIVDVS 35 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhc-----CC-------eEEEEeCC
Confidence 5799999999999999988653 63 68889874
No 90
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.46 E-value=1.4 Score=46.66 Aligned_cols=83 Identities=20% Similarity=0.338 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHhCCCcccceEEEeCcChH-HHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchh
Q 007703 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAGEA-GTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (592)
Q Consensus 311 aaV~LAgll~Alr~~g~~l~d~riv~~GAGsA-g~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~ 389 (592)
.-+|-.|++.=++..|.++++++++++|.|.- |.-+|.+|.. .|. .+.+|+++
T Consensus 138 ~PcTp~aii~lL~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~-----~~a-------tVt~~hs~-------------- 191 (285)
T PRK14189 138 RPCTPYGVMKMLESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQ-----AGA-------TVTICHSK-------------- 191 (285)
T ss_pred cCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHH-----CCC-------EEEEecCC--------------
Confidence 45677888899999999999999999999988 9999999864 242 45555432
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007703 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (592)
Q Consensus 390 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 431 (592)
..+|.+.+++ .|++|-..+.++.|+.++++
T Consensus 192 ----------t~~l~~~~~~--ADIVV~avG~~~~i~~~~ik 221 (285)
T PRK14189 192 ----------TRDLAAHTRQ--ADIVVAAVGKRNVLTADMVK 221 (285)
T ss_pred ----------CCCHHHHhhh--CCEEEEcCCCcCccCHHHcC
Confidence 1357788886 99999999999999997775
No 91
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=89.39 E-value=1.1 Score=43.27 Aligned_cols=115 Identities=13% Similarity=0.108 Sum_probs=72.8
Q ss_pred HHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhccccCCCC
Q 007703 322 LKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVN 401 (592)
Q Consensus 322 lr~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~ 401 (592)
.+..+..|.++++.|+|.|..|..||+++... |+ +++.+|+..- +.. .+....-...
T Consensus 27 ~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~f-----G~-------~V~~~d~~~~----------~~~-~~~~~~~~~~ 83 (178)
T PF02826_consen 27 ERFPGRELRGKTVGIIGYGRIGRAVARRLKAF-----GM-------RVIGYDRSPK----------PEE-GADEFGVEYV 83 (178)
T ss_dssp TTTTBS-STTSEEEEESTSHHHHHHHHHHHHT-----T--------EEEEEESSCH----------HHH-HHHHTTEEES
T ss_pred cCCCccccCCCEEEEEEEcCCcCeEeeeeecC-----Cc-------eeEEecccCC----------hhh-hcccccceee
Confidence 34567889999999999999999999998743 64 6888888522 110 1111111235
Q ss_pred CHHHHhcccCCcEEEec----cCCCCCCCHHHHHHHHccCCCCceEEecCCCCCCCCCCHHHHhc-c-ccCcEE
Q 007703 402 NLLDAVKVIKPTILIGS----SGVGRTFTKEVIEAMASFNEVKPLILALSNPTSQSECTAEEAYT-W-SKGRAI 469 (592)
Q Consensus 402 ~L~e~V~~vkPtvLIG~----S~~~g~Ft~evv~~Ma~~~e~rPIIFaLSNPt~~aEct~e~A~~-w-t~G~ai 469 (592)
+|.|+++. .|+++=. ....+.|+++.++.|.+ .-++.-.|. .++--|+|+- + .+|+.-
T Consensus 84 ~l~ell~~--aDiv~~~~plt~~T~~li~~~~l~~mk~----ga~lvN~aR----G~~vde~aL~~aL~~g~i~ 147 (178)
T PF02826_consen 84 SLDELLAQ--ADIVSLHLPLTPETRGLINAEFLAKMKP----GAVLVNVAR----GELVDEDALLDALESGKIA 147 (178)
T ss_dssp SHHHHHHH---SEEEE-SSSSTTTTTSBSHHHHHTSTT----TEEEEESSS----GGGB-HHHHHHHHHTTSEE
T ss_pred ehhhhcch--hhhhhhhhccccccceeeeeeeeecccc----ceEEEeccc----hhhhhhhHHHHHHhhccCc
Confidence 89999987 8888743 22247999999999985 566665554 4444444432 1 356554
No 92
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=89.24 E-value=0.82 Score=48.41 Aligned_cols=126 Identities=14% Similarity=0.267 Sum_probs=74.8
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhccc-cCCCCCHHHHhcc
Q 007703 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEPVNNLLDAVKV 409 (592)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~-~~~~~~L~e~V~~ 409 (592)
..||.|+|||..|..+|-+|+. .|+ .+.|.|+|.+-=..++-.-+|.+-. +|-+. .-...+. +.+++
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~-----~~~-----~~el~L~D~~~~~~~g~~~Dl~~~~-~~~~~~~i~~~~~-~~~~~ 73 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVN-----QGI-----ADELVIIDINKEKAEGDAMDLSHAV-PFTSPTKIYAGDY-SDCKD 73 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCCchhHHHHHHHHhhc-cccCCeEEEeCCH-HHhCC
Confidence 3599999999999999998764 365 3679999974111111111122221 22111 0011344 45665
Q ss_pred cCCcEEEeccCCCCC--------------CCHHHHHHHHccCCCCceEEecCCCCCCCCCCHHHHhccc--cCcEEEecC
Q 007703 410 IKPTILIGSSGVGRT--------------FTKEVIEAMASFNEVKPLILALSNPTSQSECTAEEAYTWS--KGRAIFASG 473 (592)
Q Consensus 410 vkPtvLIG~S~~~g~--------------Ft~evv~~Ma~~~e~rPIIFaLSNPt~~aEct~e~A~~wt--~G~aifAsG 473 (592)
.|++|=+.+.+.. .=+++++.|.+++. ..+|+-.|||. +....-+++++ .-+=+|.+|
T Consensus 74 --adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~-~~~vivvsNP~---d~~~~~~~k~sg~p~~~viG~g 147 (315)
T PRK00066 74 --ADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGF-DGIFLVASNPV---DILTYATWKLSGFPKERVIGSG 147 (315)
T ss_pred --CCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEccCcH---HHHHHHHHHHhCCCHHHEeecC
Confidence 8998866655321 11466778888888 99999999998 33444555554 222356665
Q ss_pred C
Q 007703 474 S 474 (592)
Q Consensus 474 S 474 (592)
.
T Consensus 148 t 148 (315)
T PRK00066 148 T 148 (315)
T ss_pred c
Confidence 4
No 93
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=89.16 E-value=0.66 Score=42.45 Aligned_cols=36 Identities=36% Similarity=0.518 Sum_probs=31.0
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCC
Q 007703 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (592)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 376 (592)
++.||+++|+|+-|.-+|+.|+.. |+ .+|.++|.+=
T Consensus 1 r~~~v~iiG~G~vGs~va~~L~~~-----Gv------~~i~lvD~d~ 36 (135)
T PF00899_consen 1 RNKRVLIIGAGGVGSEVAKNLARS-----GV------GKITLVDDDI 36 (135)
T ss_dssp HT-EEEEESTSHHHHHHHHHHHHH-----TT------SEEEEEESSB
T ss_pred CCCEEEEECcCHHHHHHHHHHHHh-----CC------CceeecCCcc
Confidence 478999999999999999999875 76 8999999873
No 94
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=89.07 E-value=1.9 Score=46.02 Aligned_cols=110 Identities=21% Similarity=0.162 Sum_probs=67.6
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCc--ccCCCccCCchhchhhccccCCCCCHHHHhcc
Q 007703 333 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL--IVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKV 409 (592)
Q Consensus 333 riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GL--v~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~ 409 (592)
||.|.|| |..|..+|..|+. .|+-.|.-...+.|+|.+.- ..++..-+|.+..-++.+...-..+..+++++
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~-----~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~ 76 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIAS-----GELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKD 76 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHh-----CCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCC
Confidence 7999999 9999999987764 35532223347999998641 11111112333322332211111456788887
Q ss_pred cCCcEEEeccCCC---CC-----------CCHHHHHHHHccC-CCCceEEecCCCC
Q 007703 410 IKPTILIGSSGVG---RT-----------FTKEVIEAMASFN-EVKPLILALSNPT 450 (592)
Q Consensus 410 vkPtvLIG~S~~~---g~-----------Ft~evv~~Ma~~~-e~rPIIFaLSNPt 450 (592)
.|++|=+.+.+ |- .-+++++.|++++ . .-||+-.|||-
T Consensus 77 --aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~-~~iiivvsNPv 129 (323)
T cd00704 77 --VDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKP-TVKVLVVGNPA 129 (323)
T ss_pred --CCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCC-CeEEEEeCCcH
Confidence 88877454443 31 1256778888884 8 89898899998
No 95
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=89.04 E-value=12 Score=41.63 Aligned_cols=179 Identities=23% Similarity=0.264 Sum_probs=120.8
Q ss_pred CCChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCCchH-HH-HHHHHcCC-----Ccee----------ccCCcchHHHH
Q 007703 252 RATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNA-FE-LLAKYGTT-----HLVF----------NDDIQGTASVV 314 (592)
Q Consensus 252 R~~geeY~~~idefv~av~~~fGp~~lIqfEDf~~~~A-f~-lL~ryr~~-----~~~F----------NDDiQGTaaV~ 314 (592)
..+..|-.+|...||+++.+.-||+.-|-=+|++..-. .. +.+.|+.- .++| .+----||-=+
T Consensus 111 ~~S~~E~erl~raf~~~i~~~iGp~~dIpApDvgt~~~~m~wm~dey~~i~g~~~~gv~TGKp~~~GGS~~r~~aTg~Gv 190 (411)
T COG0334 111 GLSDGELERLSRAFGRAIYRLIGPDTDIPAPDVGTNPQDMAWMMDEYSKIVGNSAPGVFTGKPLELGGSLGRSEATGYGV 190 (411)
T ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCcEecccccCCCHHHHHHHHHhhhhhcCCCCcceecCCcccccCCCCCCcccceeh
Confidence 35677888999999999999999999999999986321 11 56666531 2222 12222344333
Q ss_pred HHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhc
Q 007703 315 LAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA 394 (592)
Q Consensus 315 LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA 394 (592)
.-+.-.|++..|.+|++.||.|-|-|.+|.=.|+.+.+ .|. +=+-+=|++|-|++.. .|+..+....
T Consensus 191 ~~~~~~a~~~~g~~l~G~rVaVQG~GNVg~~aa~~l~~-----~GA------kvva~sds~g~i~~~~--Gld~~~l~~~ 257 (411)
T COG0334 191 FYAIREALKALGDDLEGARVAVQGFGNVGQYAAEKLHE-----LGA------KVVAVSDSKGGIYDED--GLDVEALLEL 257 (411)
T ss_pred HHHHHHHHHHcCCCcCCCEEEEECccHHHHHHHHHHHH-----cCC------EEEEEEcCCCceecCC--CCCHHHHHHH
Confidence 33344888889988999999999999999888888764 263 5566778999888763 4553332211
Q ss_pred cc----------cCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHccCCCCceEEecCC-CCC
Q 007703 395 HE----------HEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVKPLILALSN-PTS 451 (592)
Q Consensus 395 ~~----------~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~e~rPIIFaLSN-Pt~ 451 (592)
++ .+...+ |.+-.+..|+||=+.. ++..|++-.+.+.. + +|.=-+| ||+
T Consensus 258 ~~~~~~v~~~~ga~~i~~--~e~~~~~cDIl~PcA~-~n~I~~~na~~l~a----k-~V~EgAN~P~t 317 (411)
T COG0334 258 KERRGSVAEYAGAEYITN--EELLEVDCDILIPCAL-ENVITEDNADQLKA----K-IVVEGANGPTT 317 (411)
T ss_pred hhhhhhHHhhcCceEccc--cccccccCcEEccccc-ccccchhhHHHhhh----c-EEEeccCCCCC
Confidence 11 111112 3344567899996655 67899988888764 5 7887888 774
No 96
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.76 E-value=1.3 Score=46.79 Aligned_cols=84 Identities=20% Similarity=0.345 Sum_probs=67.5
Q ss_pred hHHHHHHHHHHHHHHhCCCcccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCch
Q 007703 310 TASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 388 (592)
Q Consensus 310 TaaV~LAgll~Alr~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~ 388 (592)
=.-+|-.|++.=++..+.++++.+++++|-+ .-|--+|.++... | ..+..++++
T Consensus 131 ~~PcTp~av~~ll~~~~i~l~Gk~V~ViGrs~~vGrpla~lL~~~-----~-------atVtv~hs~------------- 185 (279)
T PRK14178 131 FAPCTPNGIMTLLHEYKISIAGKRAVVVGRSIDVGRPMAALLLNA-----D-------ATVTICHSK------------- 185 (279)
T ss_pred CCCCCHHHHHHHHHHcCCCCCCCEEEEECCCccccHHHHHHHHhC-----C-------CeeEEEecC-------------
Confidence 3456778888889999999999999999999 8888888887542 4 346666553
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007703 389 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (592)
Q Consensus 389 ~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 431 (592)
..+|.+.++. .|++|+.-+.++.+|+++|+
T Consensus 186 -----------t~~L~~~~~~--ADIvI~Avgk~~lv~~~~vk 215 (279)
T PRK14178 186 -----------TENLKAELRQ--ADILVSAAGKAGFITPDMVK 215 (279)
T ss_pred -----------hhHHHHHHhh--CCEEEECCCcccccCHHHcC
Confidence 0358889986 99999999999999999983
No 97
>PTZ00117 malate dehydrogenase; Provisional
Probab=88.65 E-value=1.9 Score=45.65 Aligned_cols=126 Identities=21% Similarity=0.339 Sum_probs=74.8
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhcccc---CCCCCHHHH
Q 007703 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH---EPVNNLLDA 406 (592)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~---~~~~~L~e~ 406 (592)
+..||.|+|||+.|.++|.+++. .|+ ..+.|+|.+-=...+..-++.+. ..+.... ....+++ +
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~-----~~~------~~l~L~Di~~~~~~g~~lDl~~~-~~~~~~~~~i~~~~d~~-~ 70 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQ-----KNL------GDVVLYDVIKGVPQGKALDLKHF-STLVGSNINILGTNNYE-D 70 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHH-----CCC------CeEEEEECCCccchhHHHHHhhh-ccccCCCeEEEeCCCHH-H
Confidence 34599999999999999987764 254 24999997521111110012111 1111100 1124565 6
Q ss_pred hcccCCcEEEeccCCCCC--------------CCHHHHHHHHccCCCCceEEecCCCCCCCCCCHHHHhcccc--CcEEE
Q 007703 407 VKVIKPTILIGSSGVGRT--------------FTKEVIEAMASFNEVKPLILALSNPTSQSECTAEEAYTWSK--GRAIF 470 (592)
Q Consensus 407 V~~vkPtvLIG~S~~~g~--------------Ft~evv~~Ma~~~e~rPIIFaLSNPt~~aEct~e~A~~wt~--G~aif 470 (592)
+++ .|++|=+.+.+.. .-+++.+.|.+++. .-+++=.|||.. .....++++++ =.-+|
T Consensus 71 l~~--ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p-~a~vivvsNP~d---i~t~~~~~~s~~p~~rvi 144 (319)
T PTZ00117 71 IKD--SDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCP-NAFVICVTNPLD---CMVKVFQEKSGIPSNKIC 144 (319)
T ss_pred hCC--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEecChHH---HHHHHHHHhhCCCcccEE
Confidence 665 8988866655432 23488899999999 887888899982 23445555542 13366
Q ss_pred ecCC
Q 007703 471 ASGS 474 (592)
Q Consensus 471 AsGS 474 (592)
++|+
T Consensus 145 G~gt 148 (319)
T PTZ00117 145 GMAG 148 (319)
T ss_pred Eecc
Confidence 6664
No 98
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=88.63 E-value=0.73 Score=49.71 Aligned_cols=38 Identities=32% Similarity=0.448 Sum_probs=32.9
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
.+|++.||+++|+|..|.-||..|+.+ |+ ++|.++|.+
T Consensus 131 ~~l~~~~VlvvG~GG~Gs~ia~~La~~-----Gv------g~i~lvD~d 168 (376)
T PRK08762 131 RRLLEARVLLIGAGGLGSPAALYLAAA-----GV------GTLGIVDHD 168 (376)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 357889999999999999999999764 76 789999986
No 99
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=88.61 E-value=1.2 Score=47.24 Aligned_cols=104 Identities=20% Similarity=0.346 Sum_probs=64.4
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhcccc---CCCCCHHHHh
Q 007703 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH---EPVNNLLDAV 407 (592)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~---~~~~~L~e~V 407 (592)
-.||.|+|||..|.++|.+++. .|+ ..+.|+|.+-=....+.-++.+. ..+.... ....++ +++
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~-----~gl------~~i~LvDi~~~~~~~~~ld~~~~-~~~~~~~~~I~~~~d~-~~l 72 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVL-----KNL------GDVVLFDIVKNIPQGKALDISHS-NVIAGSNSKVIGTNNY-EDI 72 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHh-----CCC------CeEEEEeCCCchhhHHHHHHHhh-hhccCCCeEEEECCCH-HHh
Confidence 3699999999999999997654 365 23999997532211111011111 1111111 112456 567
Q ss_pred cccCCcEEEeccCCCCCC-------------------CHHHHHHHHccCCCCceEEecCCCC
Q 007703 408 KVIKPTILIGSSGVGRTF-------------------TKEVIEAMASFNEVKPLILALSNPT 450 (592)
Q Consensus 408 ~~vkPtvLIG~S~~~g~F-------------------t~evv~~Ma~~~e~rPIIFaLSNPt 450 (592)
+. .|++|=+.+.++.- -.++++.|.+++. .-+++--|||.
T Consensus 73 ~~--aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p-~a~~iv~sNP~ 131 (321)
T PTZ00082 73 AG--SDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCP-NAFVIVITNPL 131 (321)
T ss_pred CC--CCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEecCcH
Confidence 65 89998665554321 2467888888888 77899999998
No 100
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.43 E-value=1.9 Score=45.59 Aligned_cols=84 Identities=15% Similarity=0.275 Sum_probs=68.4
Q ss_pred hHHHHHHHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCch
Q 007703 310 TASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 388 (592)
Q Consensus 310 TaaV~LAgll~Alr~~g~~l~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~ 388 (592)
=.-+|-.|++..++..+.+|++.+++++|.+. -|.-+|.+|.. .| ..+.+|+++
T Consensus 143 ~~PcTp~av~~ll~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~-----~~-------atVtv~hs~------------- 197 (287)
T PRK14176 143 LVPCTPHGVIRALEEYGVDIEGKNAVIVGHSNVVGKPMAAMLLN-----RN-------ATVSVCHVF------------- 197 (287)
T ss_pred CCCCcHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHH-----CC-------CEEEEEecc-------------
Confidence 34678889999999999999999999999998 99999998864 24 346666642
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007703 389 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (592)
Q Consensus 389 ~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 431 (592)
.++|.+.+++ .|++|-..|.++.+++++|+
T Consensus 198 -----------T~~l~~~~~~--ADIvv~AvG~p~~i~~~~vk 227 (287)
T PRK14176 198 -----------TDDLKKYTLD--ADILVVATGVKHLIKADMVK 227 (287)
T ss_pred -----------CCCHHHHHhh--CCEEEEccCCccccCHHHcC
Confidence 1247788876 99999999999999999775
No 101
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=88.12 E-value=2.1 Score=39.14 Aligned_cols=34 Identities=35% Similarity=0.390 Sum_probs=26.5
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCC
Q 007703 333 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (592)
Q Consensus 333 riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 376 (592)
||+++|+ |-.|-.|++.+.+. .|+ +=...+|++.
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~----~~~------~lv~~v~~~~ 36 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILES----PGF------ELVGAVDRKP 36 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHS----TTE------EEEEEEETTT
T ss_pred EEEEECCCCHHHHHHHHHHHhc----CCc------EEEEEEecCC
Confidence 8999999 99999999988762 343 3466788875
No 102
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=88.04 E-value=9.8 Score=41.97 Aligned_cols=95 Identities=25% Similarity=0.419 Sum_probs=57.3
Q ss_pred eeeEEeecCCCchhcccCcccccccccCCChhhhHHHHHHHH---------HHHHHhc-CCCeeeeeecCCCchHHHHHH
Q 007703 225 CLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFM---------SAVKQNY-GEKVLIQFEDFANHNAFELLA 294 (592)
Q Consensus 225 ~LPI~LDvGTnNe~LL~Dp~YlG~r~~R~~geeY~~~idefv---------~av~~~f-Gp~~lIqfEDf~~~~Af~lL~ 294 (592)
.+|...+.-..=+++.+||-+ -+||+.++.+++ ..+.+.+ |.+..+-.||+....+|++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~f---------~~~~~~~~~~~~grpTPL~~~~~Ls~~~gg~~IylK~EdlnptGS~K~-- 91 (397)
T PRK04346 23 LMPALEELEEAYEKAKNDPEF---------QAELDYLLKNYVGRPTPLYFAERLSEHLGGAKIYLKREDLNHTGAHKI-- 91 (397)
T ss_pred HHHHHHHHHHHHHHHhcCHHH---------HHHHHHHHHHhcCCCCCceEhHHHHHHcCCCeEEEEECCCCCccchHH--
Confidence 334444444444567777765 266666666654 2455666 5788888888888888865
Q ss_pred HHcCCCceeccCCcchHHHHHHHHHHHHHHhCCCcccceEEE-eCcChHHHHHHHHHHH
Q 007703 295 KYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLF-LGAGEAGTGIAELIAL 352 (592)
Q Consensus 295 ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~-~GAGsAg~GIA~ll~~ 352 (592)
| .++.-++.| +..|+ .+++. .|||..|+++|-....
T Consensus 92 r-----------------~al~~~l~A-~~~Gk----~~vIaetgaGnhG~A~A~~aa~ 128 (397)
T PRK04346 92 N-----------------NVLGQALLA-KRMGK----KRIIAETGAGQHGVATATAAAL 128 (397)
T ss_pred H-----------------HHHHHHHHH-HHcCC----CeEEEecCcHHHHHHHHHHHHH
Confidence 1 123333333 33343 35666 6999998888875543
No 103
>PRK15076 alpha-galactosidase; Provisional
Probab=87.74 E-value=1.3 Score=49.07 Aligned_cols=129 Identities=16% Similarity=0.156 Sum_probs=71.6
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCch-hchhhccccCC-----CCCHHH
Q 007703 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH-FKKPWAHEHEP-----VNNLLD 405 (592)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~-~k~~fA~~~~~-----~~~L~e 405 (592)
.||.|+|||+.| .+..++..+....++ +-..++|+|.+- +|.+.... .+.-++..... ..++.+
T Consensus 2 ~KIaIIGaGsvg--~~~~~~~~i~~~~~l----~~~evvLvDid~----er~~~~~~l~~~~~~~~~~~~~i~~ttD~~e 71 (431)
T PRK15076 2 PKITFIGAGSTV--FTKNLLGDILSVPAL----RDAEIALMDIDP----ERLEESEIVARKLAESLGASAKITATTDRRE 71 (431)
T ss_pred cEEEEECCCHHH--hHHHHHHHHhhCccC----CCCEEEEECCCH----HHHHHHHHHHHHHHHhcCCCeEEEEECCHHH
Confidence 589999999985 333343333322233 235899999752 22110000 01111111111 247788
Q ss_pred HhcccCCcEEEeccCCCCCC-------------------------------------CHHHHHHHHccCCCCceEEecCC
Q 007703 406 AVKVIKPTILIGSSGVGRTF-------------------------------------TKEVIEAMASFNEVKPLILALSN 448 (592)
Q Consensus 406 ~V~~vkPtvLIG~S~~~g~F-------------------------------------t~evv~~Ma~~~e~rPIIFaLSN 448 (592)
+++. .|++|=..+++|.- =.++++.|.+++. .-+|+-.||
T Consensus 72 al~d--ADfVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p-~a~iin~tN 148 (431)
T PRK15076 72 ALQG--ADYVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCP-DALLLNYVN 148 (431)
T ss_pred HhCC--CCEEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCC-CeEEEEcCC
Confidence 8876 77777554444211 1477788888999 999999999
Q ss_pred CCCCCCCCHHHHhccccCcEEEecC-CCCC
Q 007703 449 PTSQSECTAEEAYTWSKGRAIFASG-SPFD 477 (592)
Q Consensus 449 Pt~~aEct~e~A~~wt~G~aifAsG-SPF~ 477 (592)
|.. +-.+-++.+++ .-+|.+| +|+.
T Consensus 149 P~d---ivt~~~~~~~~-~rviG~c~~~~~ 174 (431)
T PRK15076 149 PMA---MNTWAMNRYPG-IKTVGLCHSVQG 174 (431)
T ss_pred hHH---HHHHHHhcCCC-CCEEEECCCHHH
Confidence 982 11222334533 3477777 6643
No 104
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=87.43 E-value=2.3 Score=48.36 Aligned_cols=177 Identities=15% Similarity=0.208 Sum_probs=91.8
Q ss_pred eEEeecCCCc----hhcccCcccccccccCCChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCCchHHHHHHHHcCCCce
Q 007703 227 PITVDVGTNN----EQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLV 302 (592)
Q Consensus 227 PI~LDvGTnN----e~LL~Dp~YlG~r~~R~~geeY~~~idefv~av~~~fGp~~lIqfEDf~~~~Af~lL~ryr~~~~~ 302 (592)
.|+|-|.--. +.|.++-.++|+-|+-.. .++++.+ .++ .-.+|-+|.+-.- +|- .+..+
T Consensus 66 diIlkV~~P~~~e~~~l~~g~tli~~l~p~~n----~~ll~~l----~~k--~it~ia~E~vpri------sra-q~~d~ 128 (511)
T TIGR00561 66 DIILKVNAPSDAEIAELPAGKALVSFIWPAQN----PELMEKL----AAK--NITVLAMDAVPRI------SRA-QKLDA 128 (511)
T ss_pred CEEEEeCCCCHHHHHhcCCCCEEEEEcCccCC----HHHHHHH----HHc--CCEEEEeeccccc------ccC-CccCc
Confidence 3555454332 445667778888776432 3333333 322 2345777755310 111 12222
Q ss_pred e--ccCCcchHHHHHHHHHHHHHHhC-----CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 303 F--NDDIQGTASVVLAGVVAALKLIG-----GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 303 F--NDDiQGTaaV~LAgll~Alr~~g-----~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
| +.-|.|-.+|..|+-.-.-...| ......|++|+|+|.+|+..+..+.. .|. ++.++|.+
T Consensus 129 lssma~iAGy~Avi~Aa~~lgr~~~g~~taag~vp~akVlViGaG~iGl~Aa~~ak~-----lGA-------~V~v~d~~ 196 (511)
T TIGR00561 129 LSSMANIAGYRAIIEAAHEFGRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAANS-----LGA-------IVRAFDTR 196 (511)
T ss_pred chhhHHHHHHHHHHHHHHHhhhhcCCceecCCCCCCCEEEEECCCHHHHHHHHHHHH-----CCC-------EEEEEeCC
Confidence 2 24556666666554332222222 13456899999999999988776654 252 37777775
Q ss_pred CcccCCCccCCch------------hchhhccccCC------CCCHHHHhcccCCcEEEeccCCCC-----CCCHHHHHH
Q 007703 376 GLIVSSRKDSLQH------------FKKPWAHEHEP------VNNLLDAVKVIKPTILIGSSGVGR-----TFTKEVIEA 432 (592)
Q Consensus 376 GLv~~~R~~~l~~------------~k~~fA~~~~~------~~~L~e~V~~vkPtvLIG~S~~~g-----~Ft~evv~~ 432 (592)
.-.- .+...+.. ...-||+...+ ..-+.|.++. .|++|++.-++| +.|+++++.
T Consensus 197 ~~rl-e~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~~~~--~DIVI~TalipG~~aP~Lit~emv~~ 273 (511)
T TIGR00561 197 PEVK-EQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQAKE--VDIIITTALIPGKPAPKLITEEMVDS 273 (511)
T ss_pred HHHH-HHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHHHHHhCC--CCEEEECcccCCCCCCeeehHHHHhh
Confidence 4210 00000100 00112221100 0114455554 999999984443 589999999
Q ss_pred HHc
Q 007703 433 MAS 435 (592)
Q Consensus 433 Ma~ 435 (592)
|.+
T Consensus 274 MKp 276 (511)
T TIGR00561 274 MKA 276 (511)
T ss_pred CCC
Confidence 986
No 105
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=87.27 E-value=0.75 Score=49.31 Aligned_cols=38 Identities=34% Similarity=0.534 Sum_probs=33.4
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
.+|++.||+|+|+|.-|.-+|..|+.+ |+ .+|.++|.+
T Consensus 20 ~~L~~~~VlVvG~GglGs~va~~La~a-----Gv------g~i~lvD~D 57 (339)
T PRK07688 20 QKLREKHVLIIGAGALGTANAEMLVRA-----GV------GKVTIVDRD 57 (339)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 468899999999999999999988764 76 789999996
No 106
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=87.15 E-value=1.4 Score=48.57 Aligned_cols=127 Identities=17% Similarity=0.224 Sum_probs=70.9
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhcccc------CCCCCHHHH
Q 007703 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH------EPVNNLLDA 406 (592)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~------~~~~~L~e~ 406 (592)
||.|+|||+.|.+.+- +..+..... .+-.+++|+|.+- ++.+.+...-+.++... ....++.++
T Consensus 2 KIaIIGaGs~G~a~a~--~~~i~~~~~----~~g~eV~L~Did~----e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~ea 71 (423)
T cd05297 2 KIAFIGAGSVVFTKNL--VGDLLKTPE----LSGSTIALMDIDE----ERLETVEILAKKIVEELGAPLKIEATTDRREA 71 (423)
T ss_pred eEEEECCChHHhHHHH--HHHHhcCCC----CCCCEEEEECCCH----HHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHH
Confidence 7999999999887653 111111101 1235899999752 22111111111111111 113578899
Q ss_pred hcccCCcEEEeccCCC---------------CCCC---------------------HHHHHHHHccCCCCceEEecCCCC
Q 007703 407 VKVIKPTILIGSSGVG---------------RTFT---------------------KEVIEAMASFNEVKPLILALSNPT 450 (592)
Q Consensus 407 V~~vkPtvLIG~S~~~---------------g~Ft---------------------~evv~~Ma~~~e~rPIIFaLSNPt 450 (592)
++. .|++|=.-.++ |+|. .++.+.|.+++. +.+++=.|||.
T Consensus 72 l~~--AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p-~a~~i~~tNPv 148 (423)
T cd05297 72 LDG--ADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCP-DAWLLNYANPM 148 (423)
T ss_pred hcC--CCEEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCC-CCEEEEcCChH
Confidence 886 78777443321 1221 267777788889 99999999998
Q ss_pred CCCCCCHHHHhccccCcEEEecC-CCC
Q 007703 451 SQSECTAEEAYTWSKGRAIFASG-SPF 476 (592)
Q Consensus 451 ~~aEct~e~A~~wt~G~aifAsG-SPF 476 (592)
..+| +-+++.++ .-++.+| +|+
T Consensus 149 --~i~t-~~~~k~~~-~rviG~c~~~~ 171 (423)
T cd05297 149 --AELT-WALNRYTP-IKTVGLCHGVQ 171 (423)
T ss_pred --HHHH-HHHHHhCC-CCEEEECCcHH
Confidence 3222 23346665 4467666 443
No 107
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=86.96 E-value=2 Score=44.72 Aligned_cols=100 Identities=16% Similarity=0.210 Sum_probs=63.2
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhccccCCCCCHHHHhccc-C
Q 007703 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI-K 411 (592)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~v-k 411 (592)
||-|+|.|..|..+|..+... | .++.++|++ .. ..+..+.. ......++.|+++.. +
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~-----g-------~~V~~~dr~----~~---~~~~l~~~---g~~~~~s~~~~~~~~~~ 59 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKR-----G-------HDCVGYDHD----QD---AVKAMKED---RTTGVANLRELSQRLSA 59 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHC-----C-------CEEEEEECC----HH---HHHHHHHc---CCcccCCHHHHHhhcCC
Confidence 689999999999999988652 5 356667763 11 12222211 112224666666543 5
Q ss_pred CcEEEeccCCCCCCCHHHHHHHHccCCCCceEEecCCCCCCCCCCHH
Q 007703 412 PTILIGSSGVGRTFTKEVIEAMASFNEVKPLILALSNPTSQSECTAE 458 (592)
Q Consensus 412 PtvLIG~S~~~g~Ft~evv~~Ma~~~e~rPIIFaLSNPt~~aEct~e 458 (592)
||++| ++.+.+ ..+++++.+++.-+...||+-+||.. ++-+-+
T Consensus 60 ~dvIi-~~vp~~-~~~~v~~~l~~~l~~g~ivid~st~~--~~~t~~ 102 (298)
T TIGR00872 60 PRVVW-VMVPHG-IVDAVLEELAPTLEKGDIVIDGGNSY--YKDSLR 102 (298)
T ss_pred CCEEE-EEcCch-HHHHHHHHHHhhCCCCCEEEECCCCC--cccHHH
Confidence 88887 444455 88999998886543278999999865 444444
No 108
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=86.89 E-value=2.4 Score=42.01 Aligned_cols=96 Identities=16% Similarity=0.170 Sum_probs=59.6
Q ss_pred eEEEeC-cChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhc---cc-c----CCCCCH
Q 007703 333 RFLFLG-AGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA---HE-H----EPVNNL 403 (592)
Q Consensus 333 riv~~G-AGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA---~~-~----~~~~~L 403 (592)
||.|+| +|..|..+|..+.+. | .+++++|++ .++ +......+. .. . -...+.
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~-----G-------~~V~v~~r~----~~~---~~~l~~~~~~~~~~~g~~~~~~~~~~ 62 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKA-----G-------NKIIIGSRD----LEK---AEEAAAKALEELGHGGSDIKVTGADN 62 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhC-----C-------CEEEEEEcC----HHH---HHHHHHHHHhhccccCCCceEEEeCh
Confidence 799997 899999999988652 4 467777663 111 222111111 00 0 011356
Q ss_pred HHHhcccCCcEEEeccCCCCCCCHHHHHHHHccCCCCceEEecCCCCCC
Q 007703 404 LDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVKPLILALSNPTSQ 452 (592)
Q Consensus 404 ~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~e~rPIIFaLSNPt~~ 452 (592)
.|+++. +|++| ++... ...+++++.++..-. ..+|+.++||...
T Consensus 63 ~ea~~~--aDvVi-lavp~-~~~~~~l~~l~~~l~-~~vvI~~~ngi~~ 106 (219)
T TIGR01915 63 AEAAKR--ADVVI-LAVPW-DHVLKTLESLRDELS-GKLVISPVVPLAS 106 (219)
T ss_pred HHHHhc--CCEEE-EECCH-HHHHHHHHHHHHhcc-CCEEEEeccCcee
Confidence 778775 78766 44433 345788888876555 5799999999854
No 109
>PRK13243 glyoxylate reductase; Reviewed
Probab=86.67 E-value=4.5 Score=43.18 Aligned_cols=141 Identities=13% Similarity=0.117 Sum_probs=82.0
Q ss_pred CCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhccccCCCCCHHH
Q 007703 326 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLD 405 (592)
Q Consensus 326 g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e 405 (592)
|..|.+++|.|+|.|..|..+|+.+... |+ +++.+|+.. + . .. ...+. -...+|.|
T Consensus 145 g~~L~gktvgIiG~G~IG~~vA~~l~~~-----G~-------~V~~~d~~~-----~-~-~~--~~~~~---~~~~~l~e 200 (333)
T PRK13243 145 GYDVYGKTIGIIGFGRIGQAVARRAKGF-----GM-------RILYYSRTR-----K-P-EA--EKELG---AEYRPLEE 200 (333)
T ss_pred ccCCCCCEEEEECcCHHHHHHHHHHHHC-----CC-------EEEEECCCC-----C-h-hh--HHHcC---CEecCHHH
Confidence 4568999999999999999999988642 64 577888741 1 1 10 11111 12247999
Q ss_pred HhcccCCcEEEeccC----CCCCCCHHHHHHHHccCCCCceEEecCCCCCCCCCCHHHHhccccCcEEEecCCCC--Ccc
Q 007703 406 AVKVIKPTILIGSSG----VGRTFTKEVIEAMASFNEVKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPF--DPF 479 (592)
Q Consensus 406 ~V~~vkPtvLIG~S~----~~g~Ft~evv~~Ma~~~e~rPIIFaLSNPt~~aEct~e~A~~wt~G~aifAsGSPF--~pV 479 (592)
+++. .|+++=.-- .-+.|+++.+..|.+ ..++.=.|.=.---|-.-.+|+ ..|+.-.|.=-=| +|.
T Consensus 201 ll~~--aDiV~l~lP~t~~T~~~i~~~~~~~mk~----ga~lIN~aRg~~vd~~aL~~aL--~~g~i~gAaLDV~~~EP~ 272 (333)
T PRK13243 201 LLRE--SDFVSLHVPLTKETYHMINEERLKLMKP----TAILVNTARGKVVDTKALVKAL--KEGWIAGAGLDVFEEEPY 272 (333)
T ss_pred HHhh--CCEEEEeCCCChHHhhccCHHHHhcCCC----CeEEEECcCchhcCHHHHHHHH--HcCCeEEEEeccCCCCCC
Confidence 9886 888874321 236889999999875 6677666543322222222333 3565544321111 111
Q ss_pred eeCCeeeCccCCcccccchhhhH
Q 007703 480 EYNGKVFVPGQANNAYIFPGFGL 502 (592)
Q Consensus 480 ~~~G~~~~p~Q~NN~yiFPGigl 502 (592)
. +.. -=+..|+++-|=+|-
T Consensus 273 ~--~~p--L~~~~nvilTPHia~ 291 (333)
T PRK13243 273 Y--NEE--LFSLKNVVLAPHIGS 291 (333)
T ss_pred C--Cch--hhcCCCEEECCcCCc
Confidence 1 111 123468889898874
No 110
>PRK06223 malate dehydrogenase; Reviewed
Probab=86.27 E-value=1.7 Score=45.11 Aligned_cols=119 Identities=19% Similarity=0.337 Sum_probs=70.7
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhccc----c-----CCCCC
Q 007703 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE----H-----EPVNN 402 (592)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~----~-----~~~~~ 402 (592)
.||.|+|||..|.++|..++. .|+ . .++|+|.+ .++ +......+.+. . ....+
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~-----~~~-----~-ev~L~D~~----~~~---~~~~~~dl~~~~~~~~~~~~i~~~~d 64 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLAL-----KEL-----G-DVVLFDIV----EGV---PQGKALDIAEAAPVEGFDTKITGTND 64 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----CCC-----e-EEEEEECC----Cch---hHHHHHHHHhhhhhcCCCcEEEeCCC
Confidence 489999999999999998764 254 2 79999983 111 11111111111 0 01234
Q ss_pred HHHHhcccCCcEEEeccCCC---C-----------CCCHHHHHHHHccCCCCceEEecCCCCCCCCCCHHHHhccccC--
Q 007703 403 LLDAVKVIKPTILIGSSGVG---R-----------TFTKEVIEAMASFNEVKPLILALSNPTSQSECTAEEAYTWSKG-- 466 (592)
Q Consensus 403 L~e~V~~vkPtvLIG~S~~~---g-----------~Ft~evv~~Ma~~~e~rPIIFaLSNPt~~aEct~e~A~~wt~G-- 466 (592)
. ++++. .|++|=+.+.+ | -.-+++++.|.+++. ..+++-.|||. .....-+++++ |
T Consensus 65 ~-~~~~~--aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~-~~~viv~tNP~---d~~~~~~~~~s-~~~ 136 (307)
T PRK06223 65 Y-EDIAG--SDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAP-DAIVIVVTNPV---DAMTYVALKES-GFP 136 (307)
T ss_pred H-HHHCC--CCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEecCcH---HHHHHHHHHHh-CCC
Confidence 5 45665 88888333322 2 123567777888888 89888889998 12223334444 3
Q ss_pred -cEEEecCCCC
Q 007703 467 -RAIFASGSPF 476 (592)
Q Consensus 467 -~aifAsGSPF 476 (592)
+-+|++|.-.
T Consensus 137 ~~~viG~gt~l 147 (307)
T PRK06223 137 KNRVIGMAGVL 147 (307)
T ss_pred cccEEEeCCCc
Confidence 4588888543
No 111
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=86.26 E-value=3.8 Score=43.90 Aligned_cols=100 Identities=22% Similarity=0.211 Sum_probs=68.7
Q ss_pred hHHHHHHHHHHHHH------------------HhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEE
Q 007703 310 TASVVLAGVVAALK------------------LIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICL 371 (592)
Q Consensus 310 TaaV~LAgll~Alr------------------~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~l 371 (592)
.|=-+++.+|+..| ..|..|.++++-|+|.|..|..+|+.+... |+ ++..
T Consensus 103 vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~g~el~gkTvGIiG~G~IG~~va~~l~af-----gm-------~v~~ 170 (324)
T COG0111 103 VAELVLALLLALARRIPDADASQRRGEWDRKAFRGTELAGKTVGIIGLGRIGRAVAKRLKAF-----GM-------KVIG 170 (324)
T ss_pred HHHHHHHHHHHHhcCchhhHHHHHcCCccccccccccccCCEEEEECCCHHHHHHHHHHHhC-----CC-------eEEE
Confidence 34446777888777 567789999999999999999999988653 65 6777
Q ss_pred EccCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEec----cCCCCCCCHHHHHHHH
Q 007703 372 VDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGS----SGVGRTFTKEVIEAMA 434 (592)
Q Consensus 372 vD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~----S~~~g~Ft~evv~~Ma 434 (592)
+|+. ..+. ... ........+|.+.++. .|+|.-. ...-|.++.+-+..|.
T Consensus 171 ~d~~----~~~~--~~~-----~~~~~~~~~Ld~lL~~--sDiv~lh~PlT~eT~g~i~~~~~a~MK 224 (324)
T COG0111 171 YDPY----SPRE--RAG-----VDGVVGVDSLDELLAE--ADILTLHLPLTPETRGLINAEELAKMK 224 (324)
T ss_pred ECCC----Cchh--hhc-----cccceecccHHHHHhh--CCEEEEcCCCCcchhcccCHHHHhhCC
Confidence 8873 1110 000 0111233678888886 8888743 2234688888888886
No 112
>PRK08374 homoserine dehydrogenase; Provisional
Probab=86.14 E-value=4 Score=43.74 Aligned_cols=105 Identities=18% Similarity=0.251 Sum_probs=62.7
Q ss_pred ceEEEeCcChHHHHHHHHHHH---HHHHhcCCChhhhcCcEEEEccCCcccCCCccCCc---hhchhhcccc------C-
Q 007703 332 HRFLFLGAGEAGTGIAELIAL---EISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ---HFKKPWAHEH------E- 398 (592)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~---~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~---~~k~~fA~~~------~- 398 (592)
.+|.++|-|..|.+++++|.+ .+.++.|+.. +=+-+.|++|-+...+.-++. .+++.+.... .
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l----~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~ 78 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVEL----KVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEV 78 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCE----EEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccc
Confidence 589999999999999999977 3333345321 224456999888765531121 1222222100 0
Q ss_pred CCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHccCCCCceEE
Q 007703 399 PVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVKPLIL 444 (592)
Q Consensus 399 ~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~e~rPIIF 444 (592)
..-++.|.++...+||+|-+++.. ...+-+.+.+.+ . +++|.
T Consensus 79 ~~~~~~ell~~~~~DVvVd~t~~~-~a~~~~~~al~~--G-~~VVt 120 (336)
T PRK08374 79 YNFSPEEIVEEIDADIVVDVTNDK-NAHEWHLEALKE--G-KSVVT 120 (336)
T ss_pred cCCCHHHHHhcCCCCEEEECCCcH-HHHHHHHHHHhh--C-CcEEE
Confidence 012688888878899999998632 333333333432 4 67775
No 113
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=86.06 E-value=1.6 Score=45.42 Aligned_cols=48 Identities=10% Similarity=0.063 Sum_probs=36.5
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 316 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 316 Agll~Alr~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
.|++.+++..|.+. +.+++++|||-|+-+|+-.|.+ .|. ++|+++++.
T Consensus 108 ~Gf~~~L~~~~~~~-~~~vlilGaGGaarAi~~aL~~-----~g~------~~i~i~nR~ 155 (272)
T PRK12550 108 IAIAKLLASYQVPP-DLVVALRGSGGMAKAVAAALRD-----AGF------TDGTIVARN 155 (272)
T ss_pred HHHHHHHHhcCCCC-CCeEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC
Confidence 45677777666653 4699999999999888877754 365 679999884
No 114
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.80 E-value=2.4 Score=44.84 Aligned_cols=87 Identities=17% Similarity=0.270 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHhCCCcccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchh
Q 007703 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (592)
Q Consensus 311 aaV~LAgll~Alr~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~ 389 (592)
.-+|-+|++.=++..|.+++.++++++|.+ ..|.-+|.||... |. .+ ...+..++++.
T Consensus 137 ~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~-----~~-~~--~AtVt~~hs~t------------- 195 (286)
T PRK14184 137 RPCTPAGVMTLLERYGLSPAGKKAVVVGRSNIVGKPLALMLGAP-----GK-FA--NATVTVCHSRT------------- 195 (286)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHhCC-----cc-cC--CCEEEEEeCCc-------------
Confidence 456778889999999999999999999986 5788888887531 10 00 13455565431
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007703 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (592)
Q Consensus 390 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 431 (592)
.+|.+.++. +|++|+..+.++.+++++|+
T Consensus 196 -----------~~l~~~~~~--ADIVI~AvG~p~li~~~~vk 224 (286)
T PRK14184 196 -----------PDLAEECRE--ADFLFVAIGRPRFVTADMVK 224 (286)
T ss_pred -----------hhHHHHHHh--CCEEEEecCCCCcCCHHHcC
Confidence 358889987 99999999999999999994
No 115
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.74 E-value=3 Score=44.08 Aligned_cols=83 Identities=19% Similarity=0.306 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHhCCCcccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchh
Q 007703 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (592)
Q Consensus 311 aaV~LAgll~Alr~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~ 389 (592)
.-+|-.|++.-++..|.++++++++++|.+ ..|.-+|.||.. .| ..+.+|+++
T Consensus 138 ~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~-----~~-------atVt~chs~-------------- 191 (284)
T PRK14190 138 LPCTPHGILELLKEYNIDISGKHVVVVGRSNIVGKPVGQLLLN-----EN-------ATVTYCHSK-------------- 191 (284)
T ss_pred CCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHH-----CC-------CEEEEEeCC--------------
Confidence 456778888899999999999999999985 678888888864 24 345666542
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007703 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (592)
Q Consensus 390 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 431 (592)
..+|.+.+++ +|++|...+.++.|++++|+
T Consensus 192 ----------t~~l~~~~~~--ADIvI~AvG~p~~i~~~~ik 221 (284)
T PRK14190 192 ----------TKNLAELTKQ--ADILIVAVGKPKLITADMVK 221 (284)
T ss_pred ----------chhHHHHHHh--CCEEEEecCCCCcCCHHHcC
Confidence 1368888987 99999999999999999995
No 116
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=85.33 E-value=0.9 Score=45.46 Aligned_cols=38 Identities=29% Similarity=0.340 Sum_probs=33.4
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
.+|++.||+++|+|..|..||+.|+.+ |+ .+|.++|.+
T Consensus 24 ~~L~~~~V~ViG~GglGs~ia~~La~~-----Gv------g~i~lvD~D 61 (212)
T PRK08644 24 EKLKKAKVGIAGAGGLGSNIAVALARS-----GV------GNLKLVDFD 61 (212)
T ss_pred HHHhCCCEEEECcCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 457889999999999999999999763 76 789999986
No 117
>PRK14851 hypothetical protein; Provisional
Probab=84.85 E-value=3.7 Score=48.22 Aligned_cols=123 Identities=15% Similarity=0.119 Sum_probs=78.4
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCC--Cc-----cCCchhchhhccc---
Q 007703 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSS--RK-----DSLQHFKKPWAHE--- 396 (592)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~--R~-----~~l~~~k~~fA~~--- 396 (592)
++|++.||+|+|+|..|.-+|+.|+.+ |+ .+|.++|-+=+-.++ |. +++-..|..-+..
T Consensus 39 ~kL~~~~VlIvG~GGlGs~va~~Lar~-----GV------G~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~ 107 (679)
T PRK14851 39 ERLAEAKVAIPGMGGVGGVHLITMVRT-----GI------GRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQAL 107 (679)
T ss_pred HHHhcCeEEEECcCHHHHHHHHHHHHh-----CC------CeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHH
Confidence 568899999999999999999988874 87 789999976332211 10 1122223222221
Q ss_pred --c---------CCC--CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHccCCCCceEEecC----------CCCCCC
Q 007703 397 --H---------EPV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVKPLILALS----------NPTSQS 453 (592)
Q Consensus 397 --~---------~~~--~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~e~rPIIFaLS----------NPt~~a 453 (592)
. ..+ .++.+.++. .|++|-+..-...-++..|...+..+. .|+|++-. +|.
T Consensus 108 ~inP~~~I~~~~~~i~~~n~~~~l~~--~DvVid~~D~~~~~~r~~l~~~c~~~~-iP~i~~g~~G~~g~~~~~~p~--- 181 (679)
T PRK14851 108 SINPFLEITPFPAGINADNMDAFLDG--VDVVLDGLDFFQFEIRRTLFNMAREKG-IPVITAGPLGYSSAMLVFTPQ--- 181 (679)
T ss_pred HhCCCCeEEEEecCCChHHHHHHHhC--CCEEEECCCCCcHHHHHHHHHHHHHCC-CCEEEeecccccceEEEEcCC---
Confidence 0 111 246666765 899885543211113446666777778 99998754 676
Q ss_pred CCCHHHHhccccC
Q 007703 454 ECTAEEAYTWSKG 466 (592)
Q Consensus 454 Ect~e~A~~wt~G 466 (592)
..+.++.|.+.++
T Consensus 182 ~~~~~~~~~~~~~ 194 (679)
T PRK14851 182 GMGFDDYFNIGGK 194 (679)
T ss_pred CCCHhHhccCCCC
Confidence 5788888888777
No 118
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=84.77 E-value=0.71 Score=51.45 Aligned_cols=124 Identities=19% Similarity=0.366 Sum_probs=81.6
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhccc-cCCC-----CCH
Q 007703 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEPV-----NNL 403 (592)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~-~~~~-----~~L 403 (592)
...||+|+||||. .-.+++...+.+...++. ..|||+|-+ .+|.+.....-+.+.+. ..+. .++
T Consensus 2 ~~~KI~iIGgGSt--~tp~~v~g~l~~~e~l~~----~el~L~Did----~~r~~~i~~~~~~~v~~~g~~~kv~~ttd~ 71 (442)
T COG1486 2 KKFKIVIIGGGST--YTPKLLLGDLARTEELPV----RELALYDID----EERLKIIAILAKKLVEEAGAPVKVEATTDR 71 (442)
T ss_pred CcceEEEECCCcc--ccHHHHHHHHhcCccCCc----ceEEEEeCC----HHHHHHHHHHHHHHHHhhCCCeEEEEecCH
Confidence 4568999999998 567788887777666764 789999974 44422111122223322 1222 589
Q ss_pred HHHhcccCCcEEE---------------------e-----ccCCCCCCC--------HHHHHHHHccCCCCceEEecCCC
Q 007703 404 LDAVKVIKPTILI---------------------G-----SSGVGRTFT--------KEVIEAMASFNEVKPLILALSNP 449 (592)
Q Consensus 404 ~e~V~~vkPtvLI---------------------G-----~S~~~g~Ft--------~evv~~Ma~~~e~rPIIFaLSNP 449 (592)
.||++. +|-+| | +.++||.|. -|+++.|-+.|. .--++=.+||
T Consensus 72 ~eAl~g--AdfVi~~~rvG~l~~r~~De~IplkyG~~gqET~G~GGi~~glRtIpvildi~~~m~~~~P-~Aw~lNytNP 148 (442)
T COG1486 72 REALEG--ADFVITQIRVGGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDMEKVCP-NAWMLNYTNP 148 (442)
T ss_pred HHHhcC--CCEEEEEEeeCCcccchhhhccchhhCccccccccccHHHhhcccchHHHHHHHHHHHhCC-CceEEeccCh
Confidence 999987 66665 1 234445443 488999999999 9999999999
Q ss_pred CCCCCCCHHHHhccccC-cEE
Q 007703 450 TSQSECTAEEAYTWSKG-RAI 469 (592)
Q Consensus 450 t~~aEct~e~A~~wt~G-~ai 469 (592)
- +++|- -.++|+.. +.|
T Consensus 149 ~--~~vTe-Av~r~~~~~K~V 166 (442)
T COG1486 149 A--AIVTE-AVRRLYPKIKIV 166 (442)
T ss_pred H--HHHHH-HHHHhCCCCcEE
Confidence 9 77774 34555544 444
No 119
>PRK06436 glycerate dehydrogenase; Provisional
Probab=84.76 E-value=8.6 Score=40.75 Aligned_cols=92 Identities=14% Similarity=0.138 Sum_probs=63.4
Q ss_pred CCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhccccCCCCCHHH
Q 007703 326 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLD 405 (592)
Q Consensus 326 g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e 405 (592)
+..|.++++.|+|-|..|..+|+++. + .|+ +++.+|+... .+.. + ....+|.|
T Consensus 117 ~~~L~gktvgIiG~G~IG~~vA~~l~-a----fG~-------~V~~~~r~~~-----~~~~---~-------~~~~~l~e 169 (303)
T PRK06436 117 TKLLYNKSLGILGYGGIGRRVALLAK-A----FGM-------NIYAYTRSYV-----NDGI---S-------SIYMEPED 169 (303)
T ss_pred CCCCCCCEEEEECcCHHHHHHHHHHH-H----CCC-------EEEEECCCCc-----ccCc---c-------cccCCHHH
Confidence 45799999999999999999998664 3 264 6888887521 0101 0 01247888
Q ss_pred HhcccCCcEEEec----cCCCCCCCHHHHHHHHccCCCCceEEecCCCC
Q 007703 406 AVKVIKPTILIGS----SGVGRTFTKEVIEAMASFNEVKPLILALSNPT 450 (592)
Q Consensus 406 ~V~~vkPtvLIG~----S~~~g~Ft~evv~~Ma~~~e~rPIIFaLSNPt 450 (592)
+++. .|+++=. ...-++|+++.++.|.+ ..++.=.|.-.
T Consensus 170 ll~~--aDiv~~~lp~t~~T~~li~~~~l~~mk~----ga~lIN~sRG~ 212 (303)
T PRK06436 170 IMKK--SDFVLISLPLTDETRGMINSKMLSLFRK----GLAIINVARAD 212 (303)
T ss_pred HHhh--CCEEEECCCCCchhhcCcCHHHHhcCCC----CeEEEECCCcc
Confidence 8875 8888732 12246889999999975 77888777544
No 120
>PLN02306 hydroxypyruvate reductase
Probab=84.73 E-value=5 Score=44.00 Aligned_cols=174 Identities=17% Similarity=0.213 Sum_probs=99.7
Q ss_pred cCCCceeccCC---cchHHHHHHHHHHHHHHh---------------------CCCcccceEEEeCcChHHHHHHHHHHH
Q 007703 297 GTTHLVFNDDI---QGTASVVLAGVVAALKLI---------------------GGTLAEHRFLFLGAGEAGTGIAELIAL 352 (592)
Q Consensus 297 r~~~~~FNDDi---QGTaaV~LAgll~Alr~~---------------------g~~l~d~riv~~GAGsAg~GIA~ll~~ 352 (592)
+..+.+.|--- ..+|=-+++-+|+..|.. |..|.++++.|+|.|..|..+|+++..
T Consensus 107 ~~gI~V~n~pg~~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~IG~~vA~~l~~ 186 (386)
T PLN02306 107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVE 186 (386)
T ss_pred HCCCEEEECCCcCHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCCcCCCCCEEEEECCCHHHHHHHHHHHh
Confidence 35677777532 234444577777765531 345889999999999999999999864
Q ss_pred HHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhcc--------c--cCCCCCHHHHhcccCCcEEEec----
Q 007703 353 EISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH--------E--HEPVNNLLDAVKVIKPTILIGS---- 418 (592)
Q Consensus 353 ~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~--------~--~~~~~~L~e~V~~vkPtvLIG~---- 418 (592)
+| |+ +++.+|+..- . .+..+...+.. + .....+|.|+++. .|+++-.
T Consensus 187 ~f----Gm-------~V~~~d~~~~---~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~--sDiV~lh~Plt 247 (386)
T PLN02306 187 GF----KM-------NLIYYDLYQS---T---RLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLRE--ADVISLHPVLD 247 (386)
T ss_pred cC----CC-------EEEEECCCCc---h---hhhhhhhhhcccccccccccccccccCCHHHHHhh--CCEEEEeCCCC
Confidence 43 54 6888887421 0 01111001100 0 0112489999986 8998863
Q ss_pred cCCCCCCCHHHHHHHHccCCCCceEEecCCCCCCCCCCHHHHhcc--ccCcEEEecCC-CC--CcceeCCeeeCccCCcc
Q 007703 419 SGVGRTFTKEVIEAMASFNEVKPLILALSNPTSQSECTAEEAYTW--SKGRAIFASGS-PF--DPFEYNGKVFVPGQANN 493 (592)
Q Consensus 419 S~~~g~Ft~evv~~Ma~~~e~rPIIFaLSNPt~~aEct~e~A~~w--t~G~aifAsGS-PF--~pV~~~G~~~~p~Q~NN 493 (592)
....|.|+++.++.|.+ .-++.=.| +.++-=|+|+.- ..|+.-.| |. =| +|. .+. .--+..|
T Consensus 248 ~~T~~lin~~~l~~MK~----ga~lIN~a----RG~lVDe~AL~~AL~sg~i~gA-aLDVf~~EP~-~~~---~L~~~pN 314 (386)
T PLN02306 248 KTTYHLINKERLALMKK----EAVLVNAS----RGPVIDEVALVEHLKANPMFRV-GLDVFEDEPY-MKP---GLADMKN 314 (386)
T ss_pred hhhhhhcCHHHHHhCCC----CeEEEECC----CccccCHHHHHHHHHhCCeeEE-EEeCCCCCCC-Ccc---hHhhCCC
Confidence 33347999999999985 45555444 445554544422 24554322 21 01 111 010 1124568
Q ss_pred cccchhhhH
Q 007703 494 AYIFPGFGL 502 (592)
Q Consensus 494 ~yiFPGigl 502 (592)
+.+-|=+|-
T Consensus 315 VilTPHiag 323 (386)
T PLN02306 315 AVVVPHIAS 323 (386)
T ss_pred EEECCcccc
Confidence 888888763
No 121
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.69 E-value=3.7 Score=43.39 Aligned_cols=84 Identities=18% Similarity=0.206 Sum_probs=66.8
Q ss_pred hHHHHHHHHHHHHHHhCCCcccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCch
Q 007703 310 TASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 388 (592)
Q Consensus 310 TaaV~LAgll~Alr~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~ 388 (592)
-.-+|-+|++.=++..+.+++++++|++|-+ ..|.-+|.||.. .|. .+.+++++ .
T Consensus 136 ~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~-----~~A-------tVti~hs~-------T----- 191 (281)
T PRK14183 136 FVPCTPLGVMELLEEYEIDVKGKDVCVVGASNIVGKPMAALLLN-----ANA-------TVDICHIF-------T----- 191 (281)
T ss_pred CCCCcHHHHHHHHHHcCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCC-------C-----
Confidence 3456778888889999999999999999998 889999998864 242 34455442 1
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007703 389 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (592)
Q Consensus 389 ~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 431 (592)
++|.+.+++ .|++|-..|.++.|+.++|+
T Consensus 192 ------------~~l~~~~~~--ADIvV~AvGkp~~i~~~~vk 220 (281)
T PRK14183 192 ------------KDLKAHTKK--ADIVIVGVGKPNLITEDMVK 220 (281)
T ss_pred ------------cCHHHHHhh--CCEEEEecCcccccCHHHcC
Confidence 246778886 99999999999999999997
No 122
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=84.23 E-value=24 Score=36.21 Aligned_cols=108 Identities=15% Similarity=0.205 Sum_probs=61.1
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhccccCCCCCHHHHhccc
Q 007703 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI 410 (592)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~v 410 (592)
..||.|+|+|.-|..||+.++.. |.- ...+++++|+. . .+.+...+..|- .....+..|+++.
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~-----g~~---~~~~v~v~~r~----~--~~~~~~l~~~~g--~~~~~~~~e~~~~- 65 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHA-----NVV---KGEQITVSNRS----N--ETRLQELHQKYG--VKGTHNKKELLTD- 65 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHC-----CCC---CcceEEEECCC----C--HHHHHHHHHhcC--ceEeCCHHHHHhc-
Confidence 46899999999999999988652 410 11456666642 0 011222222221 1122467777764
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHcc-CCCCceEEecCCCCCCCCCCHHHHhccc
Q 007703 411 KPTILIGSSGVGRTFTKEVIEAMASF-NEVKPLILALSNPTSQSECTAEEAYTWS 464 (592)
Q Consensus 411 kPtvLIG~S~~~g~Ft~evv~~Ma~~-~e~rPIIFaLSNPt~~aEct~e~A~~wt 464 (592)
.|++| ++-.+ -..+++++.+... .+ ..+|..+++-+ ++++.-+|.
T Consensus 66 -aDvVi-lav~p-~~~~~vl~~l~~~~~~-~~liIs~~aGi-----~~~~l~~~~ 111 (279)
T PRK07679 66 -ANILF-LAMKP-KDVAEALIPFKEYIHN-NQLIISLLAGV-----STHSIRNLL 111 (279)
T ss_pred -CCEEE-EEeCH-HHHHHHHHHHHhhcCC-CCEEEEECCCC-----CHHHHHHHc
Confidence 67655 33333 3356667777653 34 67888877655 345555554
No 123
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=84.17 E-value=1.2 Score=44.69 Aligned_cols=104 Identities=23% Similarity=0.287 Sum_probs=61.3
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhcccc--CC-CCCH
Q 007703 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH--EP-VNNL 403 (592)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~--~~-~~~L 403 (592)
.+|++.||+|+|+|..|.-||+.|+.+ |+ ++|.++|.+= |..+ +|..+- -|..+. .. ...+
T Consensus 17 ~~L~~~~VlivG~GglGs~va~~La~~-----Gv------g~i~lvD~D~-ve~s---NL~Rq~-l~~~~diG~~Ka~~~ 80 (228)
T cd00757 17 EKLKNARVLVVGAGGLGSPAAEYLAAA-----GV------GKLGLVDDDV-VELS---NLQRQI-LHTEADVGQPKAEAA 80 (228)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEcCCE-EcCc---cccccc-ccChhhCCChHHHHH
Confidence 468899999999999999999999764 76 7999999972 2222 243221 121111 11 1346
Q ss_pred HHHhcccCCcEEEeccCCCCCCCHHHHHHHHccCCCCceEEecCCCC
Q 007703 404 LDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVKPLILALSNPT 450 (592)
Q Consensus 404 ~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~e~rPIIFaLSNPt 450 (592)
.+.++.+.|++=|=.. ..-++++-+...-+.. .=||-++-||.
T Consensus 81 ~~~l~~~np~~~i~~~--~~~i~~~~~~~~~~~~--DvVi~~~d~~~ 123 (228)
T cd00757 81 AERLRAINPDVEIEAY--NERLDAENAEELIAGY--DLVLDCTDNFA 123 (228)
T ss_pred HHHHHHhCCCCEEEEe--cceeCHHHHHHHHhCC--CEEEEcCCCHH
Confidence 6777777787544222 2234554444332211 33444666665
No 124
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=84.15 E-value=6.5 Score=41.93 Aligned_cols=121 Identities=20% Similarity=0.213 Sum_probs=70.4
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcc--cCCCccCCchhchhhccccCCCCCHHHHhcc
Q 007703 333 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI--VSSRKDSLQHFKKPWAHEHEPVNNLLDAVKV 409 (592)
Q Consensus 333 riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv--~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~ 409 (592)
||+|.|| |..|..+|..|+. .|+--.+....+.++|.+.-. ..+..-++.+..-++..+.....++.+++++
T Consensus 4 kV~I~GAaG~VG~~la~~L~~-----~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~ 78 (325)
T cd01336 4 RVLVTGAAGQIAYSLLPMIAK-----GDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKD 78 (325)
T ss_pred EEEEECCCCHHHHHHHHHHHh-----CcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCC
Confidence 6999999 9999999998765 244100111379999985411 0110001221111111111112578888886
Q ss_pred cCCcEEEeccCCCCC--CC------------HHHHHHHHccC-CCCceEEecCCCCCCCCCCHHHHhccc
Q 007703 410 IKPTILIGSSGVGRT--FT------------KEVIEAMASFN-EVKPLILALSNPTSQSECTAEEAYTWS 464 (592)
Q Consensus 410 vkPtvLIG~S~~~g~--Ft------------~evv~~Ma~~~-e~rPIIFaLSNPt~~aEct~e~A~~wt 464 (592)
+|++|=+.+.+.. .| +++++.|.+++ . .-||+-.|||. ....--+++++
T Consensus 79 --aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~-~~iiivvsNPv---D~~t~~~~k~~ 142 (325)
T cd01336 79 --VDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKK-NVKVLVVGNPA---NTNALILLKYA 142 (325)
T ss_pred --CCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCC-CeEEEEecCcH---HHHHHHHHHHc
Confidence 9998866555421 23 56677788884 6 88888899997 34444455544
No 125
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=83.86 E-value=1.4 Score=46.06 Aligned_cols=32 Identities=34% Similarity=0.388 Sum_probs=25.5
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
.||.|+|+|+.|.++|..+... | .++.++|+.
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~-----G-------~~V~~~~r~ 36 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASK-----G-------VPVRLWARR 36 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHC-----C-------CeEEEEeCC
Confidence 4799999999999999988753 5 347777763
No 126
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=83.77 E-value=3.9 Score=43.24 Aligned_cols=83 Identities=24% Similarity=0.373 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHhCCCcccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchh
Q 007703 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (592)
Q Consensus 311 aaV~LAgll~Alr~~g~~l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~ 389 (592)
.-+|-+|++.=++..|.++++++++|+|. |..|.-+|.+|... |. .+.++.+ +.
T Consensus 138 ~PcTp~avi~lL~~~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~-----ga-------tVtv~~s-------~t------ 192 (284)
T PRK14179 138 IPCTPAGIMEMFREYNVELEGKHAVVIGRSNIVGKPMAQLLLDK-----NA-------TVTLTHS-------RT------ 192 (284)
T ss_pred cCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcCcHHHHHHHHHC-----CC-------EEEEECC-------CC------
Confidence 45667778888899999999999999999 99999999999752 53 3444422 11
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007703 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (592)
Q Consensus 390 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 431 (592)
.+|.+.+++ .|++|-.-+.++.+++++++
T Consensus 193 -----------~~l~~~~~~--ADIVI~avg~~~~v~~~~ik 221 (284)
T PRK14179 193 -----------RNLAEVARK--ADILVVAIGRGHFVTKEFVK 221 (284)
T ss_pred -----------CCHHHHHhh--CCEEEEecCccccCCHHHcc
Confidence 268888987 99999999999999988754
No 127
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=83.68 E-value=1.2 Score=47.79 Aligned_cols=39 Identities=26% Similarity=0.379 Sum_probs=34.4
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCC
Q 007703 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (592)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 376 (592)
.+|++.||+|+|+|..|.-+|+.|+.+ |+ .+|.++|.+=
T Consensus 20 ~~L~~~~VlIiG~GglGs~va~~La~a-----Gv------g~i~lvD~D~ 58 (338)
T PRK12475 20 RKIREKHVLIVGAGALGAANAEALVRA-----GI------GKLTIADRDY 58 (338)
T ss_pred HhhcCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEcCCc
Confidence 468899999999999999999999875 76 7899999973
No 128
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=83.24 E-value=0.36 Score=46.05 Aligned_cols=90 Identities=23% Similarity=0.378 Sum_probs=49.7
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC-------------CcccCCCccCCchhchhhcc
Q 007703 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK-------------GLIVSSRKDSLQHFKKPWAH 395 (592)
Q Consensus 329 l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~-------------GLv~~~R~~~l~~~k~~fA~ 395 (592)
+.-.+|||.|+|.+|.|.++++... |. ++...|.. ++.+ ...+.+.. +.|++
T Consensus 18 ~~p~~vvv~G~G~vg~gA~~~~~~l-----Ga-------~v~~~d~~~~~~~~~~~~~~~~i~~-~~~~~~~~--~~~~~ 82 (168)
T PF01262_consen 18 VPPAKVVVTGAGRVGQGAAEIAKGL-----GA-------EVVVPDERPERLRQLESLGAYFIEV-DYEDHLER--KDFDK 82 (168)
T ss_dssp E-T-EEEEESTSHHHHHHHHHHHHT-----T--------EEEEEESSHHHHHHHHHTTTEESEE-TTTTTTTS--B-CCH
T ss_pred CCCeEEEEECCCHHHHHHHHHHhHC-----CC-------EEEeccCCHHHHHhhhcccCceEEE-cccccccc--cccch
Confidence 5568999999999999999988653 53 33444432 0111 00000000 00222
Q ss_pred c------cCCCCCHHHHhcccCCcEEEecc-----CCCCCCCHHHHHHHHc
Q 007703 396 E------HEPVNNLLDAVKVIKPTILIGSS-----GVGRTFTKEVIEAMAS 435 (592)
Q Consensus 396 ~------~~~~~~L~e~V~~vkPtvLIG~S-----~~~g~Ft~evv~~Ma~ 435 (592)
. ......|.+.++. .|++|+.. ..+-+||++.++.|.+
T Consensus 83 ~~~~~~~~~~~~~f~~~i~~--~d~vI~~~~~~~~~~P~lvt~~~~~~m~~ 131 (168)
T PF01262_consen 83 ADYYEHPESYESNFAEFIAP--ADIVIGNGLYWGKRAPRLVTEEMVKSMKP 131 (168)
T ss_dssp HHCHHHCCHHHHHHHHHHHH---SEEEEHHHBTTSS---SBEHHHHHTSST
T ss_pred hhhhHHHHHhHHHHHHHHhh--CcEEeeecccCCCCCCEEEEhHHhhccCC
Confidence 1 1111368888876 79999743 3445899999999974
No 129
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=83.14 E-value=3.5 Score=46.20 Aligned_cols=86 Identities=16% Similarity=0.114 Sum_probs=60.0
Q ss_pred HHHHHHHHhcCCCeeeeeecCCCchHHHHHHHHcC-CCc--eeccCCcchHHHHHHHHHHHHHHh--------CCCcccc
Q 007703 264 EFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGT-THL--VFNDDIQGTASVVLAGVVAALKLI--------GGTLAEH 332 (592)
Q Consensus 264 efv~av~~~fGp~~lIqfEDf~~~~Af~lL~ryr~-~~~--~FNDDiQGTaaV~LAgll~Alr~~--------g~~l~d~ 332 (592)
+.+..+.... |+ |..|=+....-.++.++|.- ..| .+|++..+.+....+-+++.++.. ...-.+.
T Consensus 137 ~~~~~~a~~~-p~--i~~~~id~~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 213 (515)
T TIGR03140 137 QALNQMALLN-PN--ISHTMIDGALFQDEVEALGIQGVPAVFLNGEEFHNGRMDLAELLEKLEETAGVEAASALEQLDPY 213 (515)
T ss_pred HHHHHHHHhC-CC--ceEEEEEchhCHHHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhhccCcccchhccccCCC
Confidence 3334444444 54 44554666777788899973 444 458888888888888888877654 1224457
Q ss_pred eEEEeCcChHHHHHHHHHHH
Q 007703 333 RFLFLGAGEAGTGIAELIAL 352 (592)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~ 352 (592)
+++|+|||+||+..|..+..
T Consensus 214 dVvIIGgGpAGl~AA~~la~ 233 (515)
T TIGR03140 214 DVLVVGGGPAGAAAAIYAAR 233 (515)
T ss_pred CEEEECCCHHHHHHHHHHHH
Confidence 89999999999999887754
No 130
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=83.13 E-value=1.3 Score=45.11 Aligned_cols=86 Identities=23% Similarity=0.339 Sum_probs=52.5
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhccc--cCC-CCCH
Q 007703 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE--HEP-VNNL 403 (592)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~--~~~-~~~L 403 (592)
.+|++.||+++|+|..|.-+|..|+.+ |+ ++|.++|.+=+ ..+ +|..+ .-|... +.+ ...+
T Consensus 20 ~~L~~~~VlvvG~GglGs~va~~La~~-----Gv------g~i~lvD~D~v-e~s---NL~RQ-~l~~~~diG~~Ka~~a 83 (240)
T TIGR02355 20 EALKASRVLIVGLGGLGCAASQYLAAA-----GV------GNLTLLDFDTV-SLS---NLQRQ-VLHSDANIGQPKVESA 83 (240)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHc-----CC------CEEEEEeCCcc-ccc---Ccccc-eeeeHhhCCCcHHHHH
Confidence 467889999999999999999999764 76 78999999722 221 24321 111111 111 1245
Q ss_pred HHHhcccCCcEEEeccCCCCCCCHHHH
Q 007703 404 LDAVKVIKPTILIGSSGVGRTFTKEVI 430 (592)
Q Consensus 404 ~e~V~~vkPtvLIG~S~~~g~Ft~evv 430 (592)
.+.++.+.|++-|-.-. ..++++-+
T Consensus 84 ~~~l~~inp~v~i~~~~--~~i~~~~~ 108 (240)
T TIGR02355 84 KDALTQINPHIAINPIN--AKLDDAEL 108 (240)
T ss_pred HHHHHHHCCCcEEEEEe--ccCCHHHH
Confidence 56666677776664332 24454433
No 131
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=83.03 E-value=5.1 Score=42.43 Aligned_cols=82 Identities=23% Similarity=0.311 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHhCCCcccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhc
Q 007703 312 SVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK 390 (592)
Q Consensus 312 aV~LAgll~Alr~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k 390 (592)
-+|-.|++.=++..+.++++++++++|.+ ..|.-+|.||.. .| ..+.+|+|+
T Consensus 140 PcTp~avi~ll~~y~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~-------atVt~chs~--------------- 192 (284)
T PRK14177 140 PCTPYGMVLLLKEYGIDVTGKNAVVVGRSPILGKPMAMLLTE-----MN-------ATVTLCHSK--------------- 192 (284)
T ss_pred CCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CC-------CEEEEeCCC---------------
Confidence 44567777778889999999999999975 578888888864 24 346666653
Q ss_pred hhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007703 391 KPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (592)
Q Consensus 391 ~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 431 (592)
.++|.+.+++ +|++|-..|.++.++.++|+
T Consensus 193 ---------T~~l~~~~~~--ADIvIsAvGk~~~i~~~~ik 222 (284)
T PRK14177 193 ---------TQNLPSIVRQ--ADIIVGAVGKPEFIKADWIS 222 (284)
T ss_pred ---------CCCHHHHHhh--CCEEEEeCCCcCccCHHHcC
Confidence 1357788886 99999999999999999996
No 132
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=82.87 E-value=8 Score=41.23 Aligned_cols=102 Identities=25% Similarity=0.331 Sum_probs=66.2
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhccccC--CCCCHHHHhcc
Q 007703 333 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHE--PVNNLLDAVKV 409 (592)
Q Consensus 333 riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~--~~~~L~e~V~~ 409 (592)
||.|+|| |..|..+|-+|+. .|+ -..+.|+|.+ +. .+-.-+|.+-. .+.+-.. ...++.+.++.
T Consensus 2 KI~IIGaaG~VG~~~a~~l~~-----~~~-----~~elvLiDi~-~a-~g~alDL~~~~-~~~~i~~~~~~~~~y~~~~d 68 (310)
T cd01337 2 KVAVLGAAGGIGQPLSLLLKL-----NPL-----VSELALYDIV-NT-PGVAADLSHIN-TPAKVTGYLGPEELKKALKG 68 (310)
T ss_pred EEEEECCCCHHHHHHHHHHHh-----CCC-----CcEEEEEecC-cc-ceeehHhHhCC-CcceEEEecCCCchHHhcCC
Confidence 8999999 9999999987743 365 3679999998 32 22211244332 1111111 11345677876
Q ss_pred cCCcEEEeccCCC---CC-----------CCHHHHHHHHccCCCCceEEecCCCC
Q 007703 410 IKPTILIGSSGVG---RT-----------FTKEVIEAMASFNEVKPLILALSNPT 450 (592)
Q Consensus 410 vkPtvLIG~S~~~---g~-----------Ft~evv~~Ma~~~e~rPIIFaLSNPt 450 (592)
.|++|=+.|.+ |- .-+++++.+.+++. ..+|+-.|||.
T Consensus 69 --aDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~p-~a~vivvtNPv 120 (310)
T cd01337 69 --ADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACP-KALILIISNPV 120 (310)
T ss_pred --CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEccCch
Confidence 88887555553 31 12466777788999 99999999998
No 133
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=82.76 E-value=4.1 Score=43.32 Aligned_cols=86 Identities=16% Similarity=0.277 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHhCCCcccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhc
Q 007703 312 SVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK 390 (592)
Q Consensus 312 aV~LAgll~Alr~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k 390 (592)
-+|-.|++.=++..+.++++++++|+|.+ ..|.-+|.||.+.+.+ .| ..+..+.++
T Consensus 140 PcTp~ail~ll~~y~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~-~~-------atVt~~hs~--------------- 196 (295)
T PRK14174 140 SCTPYGILELLGRYNIETKGKHCVVVGRSNIVGKPMANLMLQKLKE-SN-------CTVTICHSA--------------- 196 (295)
T ss_pred CCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHhcccc-CC-------CEEEEEeCC---------------
Confidence 45666778888999999999999999986 5788888888643211 12 245555432
Q ss_pred hhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007703 391 KPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (592)
Q Consensus 391 ~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 431 (592)
..+|.+.+++ .|++|+..+.++.|++++|+
T Consensus 197 ---------t~~l~~~~~~--ADIvI~Avg~~~li~~~~vk 226 (295)
T PRK14174 197 ---------TKDIPSYTRQ--ADILIAAIGKARFITADMVK 226 (295)
T ss_pred ---------chhHHHHHHh--CCEEEEecCccCccCHHHcC
Confidence 1358888986 99999999999999999994
No 134
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=82.60 E-value=2.5 Score=46.65 Aligned_cols=83 Identities=13% Similarity=0.041 Sum_probs=47.5
Q ss_pred HHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC-CcccCCCccCCchhchhhcccc
Q 007703 319 VAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK-GLIVSSRKDSLQHFKKPWAHEH 397 (592)
Q Consensus 319 l~Alr~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~-GLv~~~R~~~l~~~k~~fA~~~ 397 (592)
+.++.-....|.+.|++++|-+.-..|+++.+.+ .|+... .+ ..+.+ ... ..+... .-+.
T Consensus 299 ~~~l~~~~~~l~Gkrvai~~~~~~~~~l~~~l~e-----lGm~v~----~~-~~~~~~~~~-----~~~~~~-~~~~--- 359 (432)
T TIGR01285 299 QDAMLDTHFFLGGKKVAIAAEPDLLAAWATFFTS-----MGAQIV----AA-VTTTGSPLL-----QKLPVE-TVVI--- 359 (432)
T ss_pred HHHHHHHHHhhCCCEEEEEcCHHHHHHHHHHHHH-----CCCEEE----EE-EeCCCCHHH-----HhCCcC-cEEe---
Confidence 3444444456778999999988888999998754 476321 11 11111 000 001110 0111
Q ss_pred CCCCCHHHHhcccCCcEEEeccC
Q 007703 398 EPVNNLLDAVKVIKPTILIGSSG 420 (592)
Q Consensus 398 ~~~~~L~e~V~~vkPtvLIG~S~ 420 (592)
.+...|++.++..+||++||-|-
T Consensus 360 ~D~~~l~~~i~~~~~dliig~s~ 382 (432)
T TIGR01285 360 GDLEDLEDLACAAGADLLITNSH 382 (432)
T ss_pred CCHHHHHHHHhhcCCCEEEECcc
Confidence 12246788888889999998664
No 135
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=82.57 E-value=3.3 Score=44.95 Aligned_cols=36 Identities=31% Similarity=0.517 Sum_probs=29.9
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 328 ~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
.+++.+++|+|+|.+|.++|+.++. .| .+++++|++
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l~~-----~G-------~~V~~~d~~ 37 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFLKK-----LG-------AKVILTDEK 37 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHH-----CC-------CEEEEEeCC
Confidence 3678899999999999999988875 36 478999886
No 136
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=82.56 E-value=7 Score=40.67 Aligned_cols=92 Identities=15% Similarity=0.237 Sum_probs=55.9
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhcccc-CCCCCHHHHhccc-
Q 007703 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH-EPVNNLLDAVKVI- 410 (592)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~-~~~~~L~e~V~~v- 410 (592)
||.|+|.|..|..+|..|... | .+++++|+.. .+ .+ .++... ....++.|+++..
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~-----g-------~~v~v~dr~~----~~---~~----~~~~~g~~~~~~~~e~~~~~~ 58 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRG-----G-------HEVVGYDRNP----EA---VE----ALAEEGATGADSLEELVAKLP 58 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHC-----C-------CeEEEEECCH----HH---HH----HHHHCCCeecCCHHHHHhhcC
Confidence 799999999999999988652 5 3577777741 11 11 222211 1235677777765
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHc-cCCCCceEEecCCC
Q 007703 411 KPTILIGSSGVGRTFTKEVIEAMAS-FNEVKPLILALSNP 449 (592)
Q Consensus 411 kPtvLIG~S~~~g~Ft~evv~~Ma~-~~e~rPIIFaLSNP 449 (592)
+||++|=+ -..+...++++..+.. ..+ ..||+-+|+-
T Consensus 59 ~~dvvi~~-v~~~~~~~~v~~~l~~~l~~-g~ivid~st~ 96 (301)
T PRK09599 59 APRVVWLM-VPAGEITDATIDELAPLLSP-GDIVIDGGNS 96 (301)
T ss_pred CCCEEEEE-ecCCcHHHHHHHHHHhhCCC-CCEEEeCCCC
Confidence 36665532 2233456677665543 345 7788888763
No 137
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=82.36 E-value=4.1 Score=43.24 Aligned_cols=115 Identities=15% Similarity=0.149 Sum_probs=63.8
Q ss_pred HHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhccc
Q 007703 317 GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE 396 (592)
Q Consensus 317 gll~Alr~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~ 396 (592)
|.+++...... ...+++|+|+|..|..++..+... .++ ++++++++. ..| ...+...+.+.
T Consensus 117 ~~laa~~la~~--~~~~v~iiGaG~qA~~~~~al~~~----~~i------~~v~V~~R~----~~~---a~~~a~~~~~~ 177 (326)
T TIGR02992 117 GAVAARHLARE--DSSVVAIFGAGMQARLQLEALTLV----RDI------RSARIWARD----SAK---AEALALQLSSL 177 (326)
T ss_pred HHHHHHHhCCC--CCcEEEEECCCHHHHHHHHHHHHh----CCc------cEEEEECCC----HHH---HHHHHHHHHhh
Confidence 44444444322 346899999999998888877543 244 678888773 222 22222222211
Q ss_pred ----cCCCCCHHHHhcccCCcEEEeccCCC-CCCCHHHHHHHHccCCCCceEEecCCCC-CCCCCCHHH
Q 007703 397 ----HEPVNNLLDAVKVIKPTILIGSSGVG-RTFTKEVIEAMASFNEVKPLILALSNPT-SQSECTAEE 459 (592)
Q Consensus 397 ----~~~~~~L~e~V~~vkPtvLIG~S~~~-g~Ft~evv~~Ma~~~e~rPIIFaLSNPt-~~aEct~e~ 459 (592)
-....++.++++. .|++|-+++.. ..|+.+.++ + .-.|.++..-+ .+-|+.++-
T Consensus 178 ~g~~v~~~~~~~~av~~--aDiVvtaT~s~~p~i~~~~l~------~-g~~i~~vg~~~p~~rEld~~~ 237 (326)
T TIGR02992 178 LGIDVTAATDPRAAMSG--ADIIVTTTPSETPILHAEWLE------P-GQHVTAMGSDAEHKNEIDPAV 237 (326)
T ss_pred cCceEEEeCCHHHHhcc--CCEEEEecCCCCcEecHHHcC------C-CcEEEeeCCCCCCceecCHHH
Confidence 1123678888875 89998765432 245555543 1 22344443222 246666654
No 138
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=82.12 E-value=2.4 Score=43.71 Aligned_cols=102 Identities=15% Similarity=0.203 Sum_probs=57.4
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCC-CccCCch--hc-hhhccccCCCCCHHHHhc
Q 007703 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSS-RKDSLQH--FK-KPWAHEHEPVNNLLDAVK 408 (592)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~-R~~~l~~--~k-~~fA~~~~~~~~L~e~V~ 408 (592)
||.|+|+|..|..+|..|... | .+++++|+..-..+. +...+.. .. ...........++.++++
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~-----g-------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARN-----G-------HDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALA 70 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhC-----C-------CEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHh
Confidence 799999999999999988652 4 357788774211100 0000000 00 000000011246777776
Q ss_pred ccCCcEEEeccCCCCCCCHHHHHHHHcc-CCCCceEEecCCCCC
Q 007703 409 VIKPTILIGSSGVGRTFTKEVIEAMASF-NEVKPLILALSNPTS 451 (592)
Q Consensus 409 ~vkPtvLIG~S~~~g~Ft~evv~~Ma~~-~e~rPIIFaLSNPt~ 451 (592)
. +|++| ++... ...+++++.+.++ .+ .-+|+.++|-..
T Consensus 71 ~--~D~vi-~~v~~-~~~~~v~~~l~~~~~~-~~~vi~~~ngv~ 109 (325)
T PRK00094 71 D--ADLIL-VAVPS-QALREVLKQLKPLLPP-DAPIVWATKGIE 109 (325)
T ss_pred C--CCEEE-EeCCH-HHHHHHHHHHHhhcCC-CCEEEEEeeccc
Confidence 5 67766 33322 3578888888765 34 668888887543
No 139
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=81.89 E-value=2.1 Score=47.86 Aligned_cols=85 Identities=16% Similarity=0.160 Sum_probs=62.7
Q ss_pred eeeecCCCchHHHHHHHHcC-CCc--eeccCCcchHHHHHHHHHHHHHHhCC--------CcccceEEEeCcChHHHHHH
Q 007703 279 IQFEDFANHNAFELLAKYGT-THL--VFNDDIQGTASVVLAGVVAALKLIGG--------TLAEHRFLFLGAGEAGTGIA 347 (592)
Q Consensus 279 IqfEDf~~~~Af~lL~ryr~-~~~--~FNDDiQGTaaV~LAgll~Alr~~g~--------~l~d~riv~~GAGsAg~GIA 347 (592)
|.+|=+....-.++.++|.- ..| .+|++....|....+-++..++.... ...+..+||+|||.||+..|
T Consensus 148 i~~~~id~~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGgGpaGl~aA 227 (517)
T PRK15317 148 ITHTMIDGALFQDEVEARNIMAVPTVFLNGEEFGQGRMTLEEILAKLDTGAAARAAEELNAKDPYDVLVVGGGPAGAAAA 227 (517)
T ss_pred ceEEEEEchhCHhHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhccccccchhhcccCCCCCEEEECCCHHHHHHH
Confidence 56666666777789999973 444 46888888888888899988875322 23456899999999999999
Q ss_pred HHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 348 ELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 348 ~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
..+.. .|+ ++.++|.+
T Consensus 228 ~~la~-----~G~-------~v~li~~~ 243 (517)
T PRK15317 228 IYAAR-----KGI-------RTGIVAER 243 (517)
T ss_pred HHHHH-----CCC-------cEEEEecC
Confidence 88854 364 56666654
No 140
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=81.84 E-value=3.5 Score=42.18 Aligned_cols=100 Identities=13% Similarity=0.156 Sum_probs=56.4
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCC-CccCCch---hchhhccccCCCCCHHHHhc
Q 007703 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSS-RKDSLQH---FKKPWAHEHEPVNNLLDAVK 408 (592)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~-R~~~l~~---~k~~fA~~~~~~~~L~e~V~ 408 (592)
||.|+|+|+.|..+|..|... | .+++++++ +--.+. +...+.- ...... ......++.++++
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~-----g-------~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~ 67 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEA-----G-------RDVTFLVR-PKRAKALRERGLVIRSDHGDAVV-PGPVITDPEELTG 67 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHC-----C-------CceEEEec-HHHHHHHHhCCeEEEeCCCeEEe-cceeecCHHHccC
Confidence 799999999999999988653 4 46788877 210000 0000100 000000 0011234555544
Q ss_pred ccCCcEEEeccCCCCCCCHHHHHHHHcc-CCCCceEEecCCCCC
Q 007703 409 VIKPTILIGSSGVGRTFTKEVIEAMASF-NEVKPLILALSNPTS 451 (592)
Q Consensus 409 ~vkPtvLIG~S~~~g~Ft~evv~~Ma~~-~e~rPIIFaLSNPt~ 451 (592)
.+|++|=+... ...+++++.++++ .+ ..+|+.+.|.-.
T Consensus 68 --~~d~vilavk~--~~~~~~~~~l~~~~~~-~~~ii~~~nG~~ 106 (305)
T PRK12921 68 --PFDLVILAVKA--YQLDAAIPDLKPLVGE-DTVIIPLQNGIG 106 (305)
T ss_pred --CCCEEEEEecc--cCHHHHHHHHHhhcCC-CCEEEEeeCCCC
Confidence 36766533322 3479999999864 34 678888999863
No 141
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=81.81 E-value=1.3 Score=43.73 Aligned_cols=39 Identities=31% Similarity=0.492 Sum_probs=34.2
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCC
Q 007703 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (592)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 376 (592)
++|++.||+++|+|.-|.-+|+.|+.+ |+ ++|.++|.+=
T Consensus 15 ~~L~~s~VlviG~gglGsevak~L~~~-----GV------g~i~lvD~d~ 53 (198)
T cd01485 15 NKLRSAKVLIIGAGALGAEIAKNLVLA-----GI------DSITIVDHRL 53 (198)
T ss_pred HHHhhCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEECCc
Confidence 467899999999999999999999874 87 7899999873
No 142
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=81.45 E-value=6.6 Score=41.48 Aligned_cols=83 Identities=18% Similarity=0.300 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHhCCCcccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchh
Q 007703 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (592)
Q Consensus 311 aaV~LAgll~Alr~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~ 389 (592)
.-+|-+|++.=++..+.+|++++++++|-+ ..|.-+|.||.. .| ..+.+|+|+
T Consensus 138 ~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~-----~~-------AtVt~chs~-------------- 191 (278)
T PRK14172 138 LPCTPNSVITLIKSLNIDIEGKEVVVIGRSNIVGKPVAQLLLN-----EN-------ATVTICHSK-------------- 191 (278)
T ss_pred cCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CC-------CEEEEeCCC--------------
Confidence 456778888889999999999999999975 578888888854 24 246666652
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007703 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (592)
Q Consensus 390 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 431 (592)
..+|.+.+++ +|++|-..|.++.|++|+|+
T Consensus 192 ----------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik 221 (278)
T PRK14172 192 ----------TKNLKEVCKK--ADILVVAIGRPKFIDEEYVK 221 (278)
T ss_pred ----------CCCHHHHHhh--CCEEEEcCCCcCccCHHHcC
Confidence 1357788886 99999999999999999986
No 143
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=81.41 E-value=12 Score=39.54 Aligned_cols=135 Identities=13% Similarity=0.182 Sum_probs=86.9
Q ss_pred CCCceeccCC---cchHHHHHHHHHHHHHHh------------------------CCCcccceEEEeCcChHHHHHHHHH
Q 007703 298 TTHLVFNDDI---QGTASVVLAGVVAALKLI------------------------GGTLAEHRFLFLGAGEAGTGIAELI 350 (592)
Q Consensus 298 ~~~~~FNDDi---QGTaaV~LAgll~Alr~~------------------------g~~l~d~riv~~GAGsAg~GIA~ll 350 (592)
..+.+.|--- ..+|=-+++-+|+..|.. +..|.++++.|+|-|..|--||+++
T Consensus 85 ~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvGIiG~G~IG~~vA~~~ 164 (311)
T PRK08410 85 KGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGTIGKRVAKIA 164 (311)
T ss_pred CCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEEEECCCHHHHHHHHHH
Confidence 4555665321 335556677777776632 2468999999999999999999988
Q ss_pred HHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEec----cCCCCCCC
Q 007703 351 ALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGS----SGVGRTFT 426 (592)
Q Consensus 351 ~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~----S~~~g~Ft 426 (592)
.. | |+ +|+.+|+.+- .. + . .| ...+|.|+++. .|+++=. ...-+.|+
T Consensus 165 ~~-f----gm-------~V~~~d~~~~---~~-~----~--~~-----~~~~l~ell~~--sDvv~lh~Plt~~T~~li~ 215 (311)
T PRK08410 165 QA-F----GA-------KVVYYSTSGK---NK-N----E--EY-----ERVSLEELLKT--SDIISIHAPLNEKTKNLIA 215 (311)
T ss_pred hh-c----CC-------EEEEECCCcc---cc-c----c--Cc-----eeecHHHHhhc--CCEEEEeCCCCchhhcccC
Confidence 53 2 64 6888888431 10 0 0 11 12479999986 7888732 33347999
Q ss_pred HHHHHHHHccCCCCceEEecCCCCCCCCCCHHHHhcc--ccCcEE
Q 007703 427 KEVIEAMASFNEVKPLILALSNPTSQSECTAEEAYTW--SKGRAI 469 (592)
Q Consensus 427 ~evv~~Ma~~~e~rPIIFaLSNPt~~aEct~e~A~~w--t~G~ai 469 (592)
++.++.|.+ ..++.=.| +.++-=|+|+-. ..|+.-
T Consensus 216 ~~~~~~Mk~----~a~lIN~a----RG~vVDe~AL~~AL~~g~i~ 252 (311)
T PRK08410 216 YKELKLLKD----GAILINVG----RGGIVNEKDLAKALDEKDIY 252 (311)
T ss_pred HHHHHhCCC----CeEEEECC----CccccCHHHHHHHHHcCCeE
Confidence 999999986 66666544 455555544422 356654
No 144
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=81.41 E-value=4.8 Score=42.82 Aligned_cols=81 Identities=17% Similarity=0.315 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHhCCCcccceEEEeC-cChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchh
Q 007703 311 ASVVLAGVVAALKLIGGTLAEHRFLFLG-AGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (592)
Q Consensus 311 aaV~LAgll~Alr~~g~~l~d~riv~~G-AGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~ 389 (592)
.-+|-.|++.=++..+.++++++++|+| .|..|..+|.+|.. .|. .+.+++++ .
T Consensus 138 ~PcTp~ai~~ll~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~-----~g~-------tVtv~~~r-------T------ 192 (296)
T PRK14188 138 VPCTPLGCMMLLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLA-----ANA-------TVTIAHSR-------T------ 192 (296)
T ss_pred cCCCHHHHHHHHHHhCCCCCCCEEEEEcCCcchHHHHHHHHHh-----CCC-------EEEEECCC-------C------
Confidence 3556777888888899999999999999 99999999999975 253 45666432 1
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHH
Q 007703 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEV 429 (592)
Q Consensus 390 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~ev 429 (592)
.+|.|+++. .|++|-+-+.++.+++++
T Consensus 193 -----------~~l~e~~~~--ADIVIsavg~~~~v~~~~ 219 (296)
T PRK14188 193 -----------RDLPAVCRR--ADILVAAVGRPEMVKGDW 219 (296)
T ss_pred -----------CCHHHHHhc--CCEEEEecCChhhcchhe
Confidence 136788876 899998888777666655
No 145
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=81.31 E-value=3.4 Score=42.36 Aligned_cols=48 Identities=21% Similarity=0.328 Sum_probs=33.4
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 316 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 316 Agll~Alr~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
.|++.+++..+....+.+++|+|+|.+|..++..+.+ .| .+++++|+.
T Consensus 102 ~G~~~~l~~~~~~~~~k~vliiGaGg~g~aia~~L~~-----~g-------~~v~v~~R~ 149 (270)
T TIGR00507 102 IGLVSDLERLIPLRPNQRVLIIGAGGAARAVALPLLK-----AD-------CNVIIANRT 149 (270)
T ss_pred HHHHHHHHhcCCCccCCEEEEEcCcHHHHHHHHHHHH-----CC-------CEEEEEeCC
Confidence 3556666654555667899999999887777776653 24 368888763
No 146
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=81.03 E-value=2.6 Score=41.88 Aligned_cols=118 Identities=12% Similarity=0.173 Sum_probs=68.2
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhccccCCCCCHHHHhcc
Q 007703 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKV 409 (592)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~ 409 (592)
++.||.|+|+|..|..++..+... |.. -.++++++++. + .+.+...+..|- .....++.+++++
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~-----~~~---~~~~i~~~~~~-----~-~~~~~~~~~~~~--~~~~~~~~~~~~~ 66 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKT-----SKE---YIEEIIVSNRS-----N-VEKLDQLQARYN--VSTTTDWKQHVTS 66 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhC-----CCC---CcCeEEEECCC-----C-HHHHHHHHHHcC--cEEeCChHHHHhc
Confidence 457899999999999999887642 310 11346656542 0 111222222221 1122567788874
Q ss_pred cCCcEEEeccCCCCCCCHHHHHHHHccCCCCceEEecCCCCCCCCCCHHHHhcccc-CcEEEecC
Q 007703 410 IKPTILIGSSGVGRTFTKEVIEAMASFNEVKPLILALSNPTSQSECTAEEAYTWSK-GRAIFASG 473 (592)
Q Consensus 410 vkPtvLIG~S~~~g~Ft~evv~~Ma~~~e~rPIIFaLSNPt~~aEct~e~A~~wt~-G~aifAsG 473 (592)
.|++| ++..+. .-+++++.++.+.. ..+|+.++.-. +.++.-+|.+ +..++-+|
T Consensus 67 --~DiVi-iavp~~-~~~~v~~~l~~~~~-~~~vis~~~gi-----~~~~l~~~~~~~~~v~r~~ 121 (245)
T PRK07634 67 --VDTIV-LAMPPS-AHEELLAELSPLLS-NQLVVTVAAGI-----GPSYLEERLPKGTPVAWIM 121 (245)
T ss_pred --CCEEE-EecCHH-HHHHHHHHHHhhcc-CCEEEEECCCC-----CHHHHHHHcCCCCeEEEEC
Confidence 77776 445443 45889999886545 55777777665 3334444443 33455565
No 147
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=80.93 E-value=5.4 Score=42.36 Aligned_cols=158 Identities=13% Similarity=0.095 Sum_probs=90.6
Q ss_pred chHHHHHHHHHHHHHHh----------------CCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEE
Q 007703 309 GTASVVLAGVVAALKLI----------------GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLV 372 (592)
Q Consensus 309 GTaaV~LAgll~Alr~~----------------g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lv 372 (592)
..|--+++-+|+..|.. +..+.++++.|+|-|..|..||+.+... |+ +++.+
T Consensus 98 ~vAE~~l~~~L~~~r~~~~~~~~~~~~~w~~~~~~~l~g~tvgIvG~G~IG~~vA~~l~af-----G~-------~V~~~ 165 (312)
T PRK15469 98 QMQEYAVSQVLHWFRRFDDYQALQNSSHWQPLPEYHREDFTIGILGAGVLGSKVAQSLQTW-----GF-------PLRCW 165 (312)
T ss_pred HHHHHHHHHHHHHHcChHHHHHHHHhCCcCCCCCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEE
Confidence 34555666666654422 3468899999999999999999998753 65 56777
Q ss_pred ccCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEecc----CCCCCCCHHHHHHHHccCCCCceEEecCC
Q 007703 373 DSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSS----GVGRTFTKEVIEAMASFNEVKPLILALSN 448 (592)
Q Consensus 373 D~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S----~~~g~Ft~evv~~Ma~~~e~rPIIFaLSN 448 (592)
|+.. .. .+... .+ ....+|.|+++. .|+++=+- ..-+.|+++.++.|.+ ..++.=.|
T Consensus 166 ~~~~----~~---~~~~~-~~----~~~~~l~e~l~~--aDvvv~~lPlt~~T~~li~~~~l~~mk~----ga~lIN~a- 226 (312)
T PRK15469 166 SRSR----KS---WPGVQ-SF----AGREELSAFLSQ--TRVLINLLPNTPETVGIINQQLLEQLPD----GAYLLNLA- 226 (312)
T ss_pred eCCC----CC---CCCce-ee----cccccHHHHHhc--CCEEEECCCCCHHHHHHhHHHHHhcCCC----CcEEEECC-
Confidence 7631 11 11111 11 123578999986 78887321 1225778888888864 55555444
Q ss_pred CCCCCCCCHHHHh--ccccCcEEEecCCCCCcceeCCeeeCccCCcccccchhhh
Q 007703 449 PTSQSECTAEEAY--TWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFG 501 (592)
Q Consensus 449 Pt~~aEct~e~A~--~wt~G~aifAsGSPF~pV~~~G~~~~p~Q~NN~yiFPGig 501 (592)
+.++--|+|+ .-..|+.-.|.--=|.+--.... ..-=+..|+++-|=+|
T Consensus 227 ---RG~vVde~aL~~aL~~g~i~gaalDVf~~EPl~~~-~pl~~~~nvi~TPHia 277 (312)
T PRK15469 227 ---RGVHVVEDDLLAALDSGKVKGAMLDVFSREPLPPE-SPLWQHPRVAITPHVA 277 (312)
T ss_pred ---CccccCHHHHHHHHhcCCeeeEEecCCCCCCCCCC-ChhhcCCCeEECCcCC
Confidence 4555555555 22456654443222321111000 0012446888888776
No 148
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=80.78 E-value=1.1 Score=48.72 Aligned_cols=38 Identities=24% Similarity=0.344 Sum_probs=33.5
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
++|++.||+|+|+|..|.-+|..|+.+ |+ ++|.++|.+
T Consensus 38 ~~L~~~~VlviG~GGlGs~va~~La~~-----Gv------g~i~lvD~D 75 (392)
T PRK07878 38 KRLKNARVLVIGAGGLGSPTLLYLAAA-----GV------GTLGIVEFD 75 (392)
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHHHc-----CC------CeEEEECCC
Confidence 567899999999999999999999864 87 789999976
No 149
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=80.70 E-value=2.1 Score=43.76 Aligned_cols=38 Identities=26% Similarity=0.400 Sum_probs=33.8
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
.+|++.||+|+|+|.-|.-+|+.|+.+ |+ ++|.++|.+
T Consensus 28 ~~L~~~~VliiG~GglGs~va~~La~~-----Gv------g~i~lvD~D 65 (245)
T PRK05690 28 EKLKAARVLVVGLGGLGCAASQYLAAA-----GV------GTLTLVDFD 65 (245)
T ss_pred HHhcCCeEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEcCC
Confidence 478899999999999999999999774 76 789999997
No 150
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=80.54 E-value=3.2 Score=46.49 Aligned_cols=47 Identities=26% Similarity=0.367 Sum_probs=36.6
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcc
Q 007703 316 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (592)
Q Consensus 316 Agll~Alr~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~ 374 (592)
.|++.+++..|.++++.+++|+|+|.+|.+++..+.. .|. +++++|+
T Consensus 317 ~G~~~~l~~~~~~~~~k~vlIiGaGgiG~aia~~L~~-----~G~-------~V~i~~R 363 (477)
T PRK09310 317 EGLFSLLKQKNIPLNNQHVAIVGAGGAAKAIATTLAR-----AGA-------ELLIFNR 363 (477)
T ss_pred HHHHHHHHhcCCCcCCCEEEEEcCcHHHHHHHHHHHH-----CCC-------EEEEEeC
Confidence 4678888888889999999999999777777766653 352 5777775
No 151
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=80.53 E-value=4.5 Score=43.90 Aligned_cols=35 Identities=23% Similarity=0.390 Sum_probs=28.0
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 329 l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
+++.+++|.|+|..|.++|+.+.+ .| .++++.|.+
T Consensus 3 ~~~k~v~v~G~g~~G~s~a~~l~~-----~G-------~~V~~~d~~ 37 (447)
T PRK02472 3 YQNKKVLVLGLAKSGYAAAKLLHK-----LG-------ANVTVNDGK 37 (447)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHH-----CC-------CEEEEEcCC
Confidence 567899999999999999888765 36 368888864
No 152
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=80.50 E-value=15 Score=41.75 Aligned_cols=33 Identities=30% Similarity=0.461 Sum_probs=27.0
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
-+||.|+|+|..|.|||..++.+ |. .++++|.+
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~a-----G~-------~V~l~d~~ 37 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASA-----GH-------QVLLYDIR 37 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhC-----CC-------eEEEEeCC
Confidence 46899999999999999988763 63 67888864
No 153
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=80.45 E-value=8.8 Score=41.00 Aligned_cols=110 Identities=15% Similarity=0.089 Sum_probs=64.1
Q ss_pred ceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcc--cCCCccCCchhchhhccccCCCCCHHHHhc
Q 007703 332 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI--VSSRKDSLQHFKKPWAHEHEPVNNLLDAVK 408 (592)
Q Consensus 332 ~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv--~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~ 408 (592)
.||.|+|| |..|..+|-.|+. .|+-.-.-...+.|+|.+.=. ..+..-+|.+...++.+...-..+..+.++
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~-----~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~ 77 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIAS-----GEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFK 77 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHh-----ccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhC
Confidence 38999999 9999998887664 254100011379999985322 111111233332233221111134567777
Q ss_pred ccCCcEEEeccCCC---CCCC------------HHHHHHHHccC-CCCceEEecCCCC
Q 007703 409 VIKPTILIGSSGVG---RTFT------------KEVIEAMASFN-EVKPLILALSNPT 450 (592)
Q Consensus 409 ~vkPtvLIG~S~~~---g~Ft------------~evv~~Ma~~~-e~rPIIFaLSNPt 450 (592)
+ .|++|=+.+.+ | .| +++...+.+++ . .-||+-.|||-
T Consensus 78 d--aDivvitaG~~~k~g-~tR~dll~~N~~i~~~i~~~i~~~~~~-~~iiivvsNPv 131 (322)
T cd01338 78 D--ADWALLVGAKPRGPG-MERADLLKANGKIFTAQGKALNDVASR-DVKVLVVGNPC 131 (322)
T ss_pred C--CCEEEEeCCCCCCCC-CcHHHHHHHHHHHHHHHHHHHHhhCCC-CeEEEEecCcH
Confidence 6 89888555543 3 23 45666777777 6 77888889998
No 154
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=80.44 E-value=8 Score=37.62 Aligned_cols=83 Identities=18% Similarity=0.319 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchh
Q 007703 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (592)
Q Consensus 311 aaV~LAgll~Alr~~g~~l~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~ 389 (592)
--+|-.|++.-++..+.++++.+++++|.+. -|.-+|.||... |. .+.+++++
T Consensus 16 ~PcTp~aii~lL~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~-----~a-------tVt~~h~~-------------- 69 (160)
T PF02882_consen 16 VPCTPLAIIELLEYYGIDLEGKKVVVVGRSNIVGKPLAMLLLNK-----GA-------TVTICHSK-------------- 69 (160)
T ss_dssp --HHHHHHHHHHHHTT-STTT-EEEEE-TTTTTHHHHHHHHHHT-----T--------EEEEE-TT--------------
T ss_pred cCCCHHHHHHHHHhcCCCCCCCEEEEECCcCCCChHHHHHHHhC-----CC-------eEEeccCC--------------
Confidence 3567788888899999999999999999984 898888888652 32 34555543
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007703 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (592)
Q Consensus 390 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 431 (592)
.++|.+.++. +|++|-..+.++.++.+.|+
T Consensus 70 ----------T~~l~~~~~~--ADIVVsa~G~~~~i~~~~ik 99 (160)
T PF02882_consen 70 ----------TKNLQEITRR--ADIVVSAVGKPNLIKADWIK 99 (160)
T ss_dssp ----------SSSHHHHHTT--SSEEEE-SSSTT-B-GGGS-
T ss_pred ----------CCcccceeee--ccEEeeeecccccccccccc
Confidence 1357777875 99999999999999998886
No 155
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=80.27 E-value=6.8 Score=41.54 Aligned_cols=85 Identities=19% Similarity=0.351 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHhCCCcccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchh
Q 007703 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (592)
Q Consensus 311 aaV~LAgll~Alr~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~ 389 (592)
.-+|-.|++.-++..|.++++++++++|.+ ..|.-+|.||... ..| ..+.+|.|+
T Consensus 138 ~PcTp~av~~ll~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~---~~~-------atVtvchs~-------------- 193 (284)
T PRK14193 138 LPCTPRGIVHLLRRYDVELAGAHVVVIGRGVTVGRPIGLLLTRR---SEN-------ATVTLCHTG-------------- 193 (284)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHhhc---cCC-------CEEEEeCCC--------------
Confidence 456778888888999999999999999985 6788888888531 013 235555542
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007703 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (592)
Q Consensus 390 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 431 (592)
..+|.+.+++ +|++|-..|.++.+++++|+
T Consensus 194 ----------T~~l~~~~k~--ADIvV~AvGkp~~i~~~~ik 223 (284)
T PRK14193 194 ----------TRDLAAHTRR--ADIIVAAAGVAHLVTADMVK 223 (284)
T ss_pred ----------CCCHHHHHHh--CCEEEEecCCcCccCHHHcC
Confidence 1358888987 99999999999999999986
No 156
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=80.25 E-value=7.2 Score=41.63 Aligned_cols=83 Identities=16% Similarity=0.243 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHhCCCcccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchh
Q 007703 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (592)
Q Consensus 311 aaV~LAgll~Alr~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~ 389 (592)
.-+|-+|++.=++..|.+|+.++++|+|-+ ..|.-+|.||.. .| ..+.+|+|+
T Consensus 147 ~PcTp~avi~lL~~~~i~l~Gk~vvVIGRS~iVGkPla~lL~~-----~~-------ATVtvchs~-------------- 200 (299)
T PLN02516 147 LPCTPKGCLELLSRSGIPIKGKKAVVVGRSNIVGLPVSLLLLK-----AD-------ATVTVVHSR-------------- 200 (299)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CC-------CEEEEeCCC--------------
Confidence 456677788888999999999999999986 568888888754 24 356777553
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007703 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (592)
Q Consensus 390 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 431 (592)
.++|.+.+++ .|++|-..|.++.|+.|+|+
T Consensus 201 ----------T~nl~~~~~~--ADIvv~AvGk~~~i~~~~vk 230 (299)
T PLN02516 201 ----------TPDPESIVRE--ADIVIAAAGQAMMIKGDWIK 230 (299)
T ss_pred ----------CCCHHHHHhh--CCEEEEcCCCcCccCHHHcC
Confidence 1357788886 99999999999999999997
No 157
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=80.15 E-value=6.3 Score=39.82 Aligned_cols=96 Identities=11% Similarity=0.229 Sum_probs=58.9
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhccccCCCCCHHHHhcccC
Q 007703 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 411 (592)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vk 411 (592)
.||.|+|+|..|..+|..+... |. ...+++++|++. +..+..+..| ...-..+..++++.
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~-----g~----~~~~v~v~~r~~-------~~~~~~~~~~--g~~~~~~~~~~~~~-- 62 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLAS-----GV----PAKDIIVSDPSP-------EKRAALAEEY--GVRAATDNQEAAQE-- 62 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhC-----CC----CcceEEEEcCCH-------HHHHHHHHhc--CCeecCChHHHHhc--
Confidence 4799999999999999887643 43 125678887641 1122222221 01122466677754
Q ss_pred CcEEEeccCCCCCCCHHHHHHHHccCCCCceEEecCCCCC
Q 007703 412 PTILIGSSGVGRTFTKEVIEAMASFNEVKPLILALSNPTS 451 (592)
Q Consensus 412 PtvLIG~S~~~g~Ft~evv~~Ma~~~e~rPIIFaLSNPt~ 451 (592)
+|++| ++..+ ...+++++.+..+.+ .+|..++|-++
T Consensus 63 advVi-l~v~~-~~~~~v~~~l~~~~~--~~vvs~~~gi~ 98 (267)
T PRK11880 63 ADVVV-LAVKP-QVMEEVLSELKGQLD--KLVVSIAAGVT 98 (267)
T ss_pred CCEEE-EEcCH-HHHHHHHHHHHhhcC--CEEEEecCCCC
Confidence 77766 44433 457788888875433 37888998773
No 158
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=80.14 E-value=11 Score=40.12 Aligned_cols=115 Identities=25% Similarity=0.345 Sum_probs=70.0
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhcccc--CCCCCHHHHhcc
Q 007703 333 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH--EPVNNLLDAVKV 409 (592)
Q Consensus 333 riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~--~~~~~L~e~V~~ 409 (592)
||.|+|| |..|..+|-+|+. .|+ -..+.|+|.+. ..+-.-+|.+.. ...+-. ....++.++++.
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~-----~~~-----~~elvL~Di~~--a~g~a~DL~~~~-~~~~i~~~~~~~~~~~~~~d 67 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKL-----QPY-----VSELSLYDIAG--AAGVAADLSHIP-TAASVKGFSGEEGLENALKG 67 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHh-----CCC-----CcEEEEecCCC--CcEEEchhhcCC-cCceEEEecCCCchHHHcCC
Confidence 6899999 9999999998754 254 26799999876 122111244322 101101 011246678887
Q ss_pred cCCcEEEeccCCCCC--------------CCHHHHHHHHccCCCCceEEecCCCCC-CCCCCHHHHhcc
Q 007703 410 IKPTILIGSSGVGRT--------------FTKEVIEAMASFNEVKPLILALSNPTS-QSECTAEEAYTW 463 (592)
Q Consensus 410 vkPtvLIG~S~~~g~--------------Ft~evv~~Ma~~~e~rPIIFaLSNPt~-~aEct~e~A~~w 463 (592)
.|++|=+.+.+.. .=+++.+.+.+++. .-||+-.|||.. ++.+...-++++
T Consensus 68 --aDivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~p-~~iiivvsNPvDv~~~i~t~~~~~~ 133 (312)
T TIGR01772 68 --ADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESCP-KAMILVITNPVNSTVPIAAEVLKKK 133 (312)
T ss_pred --CCEEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhCC-CeEEEEecCchhhHHHHHHHHHHHh
Confidence 8888755554321 11456677778889 999999999983 222244445543
No 159
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=80.00 E-value=32 Score=35.32 Aligned_cols=32 Identities=31% Similarity=0.567 Sum_probs=26.0
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
+||.|+|+|..|.+||..++.. |. +++++|.+
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~-----g~-------~V~~~d~~ 35 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVA-----GY-------DVVMVDIS 35 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHC-----CC-------ceEEEeCC
Confidence 5899999999999999988642 53 68888854
No 160
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=79.99 E-value=2.3 Score=41.24 Aligned_cols=32 Identities=34% Similarity=0.423 Sum_probs=28.2
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
||+++|+|..|..||+.|+.. |+ .+|.++|.+
T Consensus 1 ~VlViG~GglGs~ia~~La~~-----Gv------g~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS-----GV------GNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 689999999999999999764 76 789999987
No 161
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=79.94 E-value=16 Score=39.16 Aligned_cols=119 Identities=13% Similarity=0.164 Sum_probs=72.3
Q ss_pred CCCceecc-CC--cchHHHHHHHHHHHHHH-------------------hCCCcccceEEEeCcChHHHHHHHHHHHHHH
Q 007703 298 TTHLVFND-DI--QGTASVVLAGVVAALKL-------------------IGGTLAEHRFLFLGAGEAGTGIAELIALEIS 355 (592)
Q Consensus 298 ~~~~~FND-Di--QGTaaV~LAgll~Alr~-------------------~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~ 355 (592)
..+.+.|- +. +.+|=-+++-+|+.+|. .|..|.+.+|.|+|.|..|..+|+.+..
T Consensus 91 ~gI~v~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~w~~~~~~~~l~g~~VgIIG~G~IG~~vA~~L~~--- 167 (330)
T PRK12480 91 HNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAEIMSKPVKNMTVAIIGTGRIGAATAKIYAG--- 167 (330)
T ss_pred CCCEEEeCCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHhCCcccccccCccccCCCEEEEECCCHHHHHHHHHHHh---
Confidence 45555552 22 23444567777766653 1346889999999999999999998864
Q ss_pred HhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEec-cCC---CCCCCHHHHH
Q 007703 356 KQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGS-SGV---GRTFTKEVIE 431 (592)
Q Consensus 356 ~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~-S~~---~g~Ft~evv~ 431 (592)
.|. +++.+|+.. +. .. .+.+ ...+|.|+++. .|+++=. ... -+.|.++++.
T Consensus 168 --~G~-------~V~~~d~~~----~~---~~----~~~~---~~~~l~ell~~--aDiVil~lP~t~~t~~li~~~~l~ 222 (330)
T PRK12480 168 --FGA-------TITAYDAYP----NK---DL----DFLT---YKDSVKEAIKD--ADIISLHVPANKESYHLFDKAMFD 222 (330)
T ss_pred --CCC-------EEEEEeCCh----hH---hh----hhhh---ccCCHHHHHhc--CCEEEEeCCCcHHHHHHHhHHHHh
Confidence 253 688888641 10 00 1111 12478888886 7876622 221 1467777777
Q ss_pred HHHccCCCCceEEecCC
Q 007703 432 AMASFNEVKPLILALSN 448 (592)
Q Consensus 432 ~Ma~~~e~rPIIFaLSN 448 (592)
.|.+ ..++.-.|.
T Consensus 223 ~mk~----gavlIN~aR 235 (330)
T PRK12480 223 HVKK----GAILVNAAR 235 (330)
T ss_pred cCCC----CcEEEEcCC
Confidence 7764 566665543
No 162
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=79.86 E-value=7.9 Score=41.28 Aligned_cols=89 Identities=20% Similarity=0.259 Sum_probs=66.9
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCc
Q 007703 309 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (592)
Q Consensus 309 GTaaV~LAgll~Alr~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~ 387 (592)
+-.-+|-.|++.=++..|.++++++++++|.+ ..|.-+|.||.. .|.. ....+.++.|+
T Consensus 139 ~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~~~---~~atVtv~hs~------------ 198 (297)
T PRK14168 139 KFLPCTPAGIQEMLVRSGVETSGAEVVVVGRSNIVGKPIANMMTQ-----KGPG---ANATVTIVHTR------------ 198 (297)
T ss_pred CCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcccHHHHHHHHh-----cccC---CCCEEEEecCC------------
Confidence 33456777888888999999999999999985 578888887754 2321 01345555443
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007703 388 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (592)
Q Consensus 388 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 431 (592)
.++|.+.+++ +|++|-..|.++.+++++|+
T Consensus 199 ------------T~~l~~~~~~--ADIvVsAvGkp~~i~~~~ik 228 (297)
T PRK14168 199 ------------SKNLARHCQR--ADILIVAAGVPNLVKPEWIK 228 (297)
T ss_pred ------------CcCHHHHHhh--CCEEEEecCCcCccCHHHcC
Confidence 1358888886 99999999999999999997
No 163
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=79.64 E-value=1.6 Score=43.16 Aligned_cols=76 Identities=16% Similarity=0.318 Sum_probs=52.4
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhccc---cCC-CCC
Q 007703 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE---HEP-VNN 402 (592)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~---~~~-~~~ 402 (592)
++|++.||+|+|+|.-|.=+|+.|+.+ |+ ++|.++|.+- |..+ +|.. +.|... +.+ ...
T Consensus 17 ~~L~~s~VlIiG~gglG~evak~La~~-----GV------g~i~lvD~d~-ve~s---nL~r--qfl~~~~diG~~Ka~a 79 (197)
T cd01492 17 KRLRSARILLIGLKGLGAEIAKNLVLS-----GI------GSLTILDDRT-VTEE---DLGA--QFLIPAEDLGQNRAEA 79 (197)
T ss_pred HHHHhCcEEEEcCCHHHHHHHHHHHHc-----CC------CEEEEEECCc-ccHh---hCCC--CccccHHHcCchHHHH
Confidence 568899999999999999999999764 87 8999999973 2221 2332 122221 111 135
Q ss_pred HHHHhcccCCcEEEecc
Q 007703 403 LLDAVKVIKPTILIGSS 419 (592)
Q Consensus 403 L~e~V~~vkPtvLIG~S 419 (592)
+.+.++.+.|++-|=..
T Consensus 80 ~~~~L~~lNp~v~i~~~ 96 (197)
T cd01492 80 SLERLRALNPRVKVSVD 96 (197)
T ss_pred HHHHHHHHCCCCEEEEE
Confidence 77888889999877543
No 164
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=79.62 E-value=7.7 Score=41.23 Aligned_cols=85 Identities=19% Similarity=0.305 Sum_probs=67.4
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCc
Q 007703 309 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (592)
Q Consensus 309 GTaaV~LAgll~Alr~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~ 387 (592)
+=.-+|-+|++.=++..+.++++.+++++|.+ ..|.-+|.||.. .|. .+.+|+|+ .
T Consensus 137 ~~~PcTp~av~~lL~~y~i~l~GK~vvViGrS~iVGkPla~lL~~-----~~A-------TVtichs~-------T---- 193 (288)
T PRK14171 137 GFIPCTALGCLAVIKKYEPNLTGKNVVIIGRSNIVGKPLSALLLK-----ENC-------SVTICHSK-------T---- 193 (288)
T ss_pred CCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCC-------C----
Confidence 34567778888899999999999999999975 578888888854 242 35556543 1
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007703 388 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (592)
Q Consensus 388 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 431 (592)
.+|.+.+++ +|++|-..|.++.+++++|+
T Consensus 194 -------------~~L~~~~~~--ADIvV~AvGkp~~i~~~~vk 222 (288)
T PRK14171 194 -------------HNLSSITSK--ADIVVAAIGSPLKLTAEYFN 222 (288)
T ss_pred -------------CCHHHHHhh--CCEEEEccCCCCccCHHHcC
Confidence 357788886 99999999999999999997
No 165
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=79.50 E-value=5.9 Score=40.34 Aligned_cols=102 Identities=15% Similarity=0.176 Sum_probs=56.2
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCC-CccCCchhchhhccccCCCCCHHHHhcccC
Q 007703 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSS-RKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 411 (592)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~-R~~~l~~~k~~fA~~~~~~~~L~e~V~~vk 411 (592)
||.|+|+|+.|..+|..+.+. | .+++++|+++=-... +...+.-....+........++.++ + +
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~-----g-------~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~--~ 66 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQA-----G-------HDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-G--P 66 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-C--C
Confidence 799999999999999888652 4 468888874211000 0000100000000000112345443 3 5
Q ss_pred CcEEEeccCCCCCCCHHHHHHHHccCCCCceEEecCCCCC
Q 007703 412 PTILIGSSGVGRTFTKEVIEAMASFNEVKPLILALSNPTS 451 (592)
Q Consensus 412 PtvLIG~S~~~g~Ft~evv~~Ma~~~e~rPIIFaLSNPt~ 451 (592)
+|++| ++... .-++++++.+++....+-+|+.+.|.-.
T Consensus 67 ~d~vi-la~k~-~~~~~~~~~l~~~l~~~~~iv~~~nG~~ 104 (304)
T PRK06522 67 QDLVI-LAVKA-YQLPAALPSLAPLLGPDTPVLFLQNGVG 104 (304)
T ss_pred CCEEE-Eeccc-ccHHHHHHHHhhhcCCCCEEEEecCCCC
Confidence 78777 44332 3479999999875431446778999753
No 166
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=79.48 E-value=2.5 Score=38.85 Aligned_cols=32 Identities=38% Similarity=0.499 Sum_probs=28.4
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
||+++|+|.-|.-+|+.|+.. |+ ++|.++|.+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~-----Gv------~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARS-----GV------GKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHC-----CC------CEEEEEcCC
Confidence 689999999999999999764 76 789999987
No 167
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=79.42 E-value=8.4 Score=41.06 Aligned_cols=83 Identities=19% Similarity=0.233 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHhCCCcccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchh
Q 007703 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (592)
Q Consensus 311 aaV~LAgll~Alr~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~ 389 (592)
.-+|-.|++.=++..|.++++++++++|.+ ..|.-+|.||.. .| ..+.+|+|+ .
T Consensus 140 ~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~-------aTVt~chs~-------T------ 194 (294)
T PRK14187 140 IPCTPKGCLYLIKTITRNLSGSDAVVIGRSNIVGKPMACLLLG-----EN-------CTVTTVHSA-------T------ 194 (294)
T ss_pred cCcCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHhh-----CC-------CEEEEeCCC-------C------
Confidence 456777888889999999999999999986 578888888854 24 346666653 1
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007703 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (592)
Q Consensus 390 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 431 (592)
++|.+.+++ +|++|-..|.++.++.++|+
T Consensus 195 -----------~~l~~~~~~--ADIvVsAvGkp~~i~~~~ik 223 (294)
T PRK14187 195 -----------RDLADYCSK--ADILVAAVGIPNFVKYSWIK 223 (294)
T ss_pred -----------CCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 347788886 99999999999999999997
No 168
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=79.19 E-value=6.1 Score=43.59 Aligned_cols=111 Identities=15% Similarity=0.217 Sum_probs=59.8
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhccccC---CCCCHHH
Q 007703 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHE---PVNNLLD 405 (592)
Q Consensus 329 l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~---~~~~L~e 405 (592)
+..+||+|+|.|-.|+++|++|.. .|. ++.++|.+-- ......-.......- ......+
T Consensus 12 ~~~~~i~v~G~G~sG~a~a~~L~~-----~G~-------~V~~~D~~~~------~~~~~~~~~l~~~gi~~~~~~~~~~ 73 (458)
T PRK01710 12 IKNKKVAVVGIGVSNIPLIKFLVK-----LGA-------KVTAFDKKSE------EELGEVSNELKELGVKLVLGENYLD 73 (458)
T ss_pred hcCCeEEEEcccHHHHHHHHHHHH-----CCC-------EEEEECCCCC------ccchHHHHHHHhCCCEEEeCCCChH
Confidence 456799999999999999998865 363 5778886420 001110001111000 0011233
Q ss_pred HhcccCCcEEEeccCCCCCCCHHHHHHHHccCCCCceEEecCCCCCCCCCCHHHHhccccCcEEEecCC
Q 007703 406 AVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGS 474 (592)
Q Consensus 406 ~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~e~rPIIFaLSNPt~~aEct~e~A~~wt~G~aifAsGS 474 (592)
-++ ++|.+|=.++.+ .-.+++.++... . -||+ +.+| -++.+.+.+.|-.|||
T Consensus 74 ~~~--~~dlVV~Spgi~-~~~p~~~~a~~~--~-i~i~-------s~~e----~~~~~~~~~vIaITGT 125 (458)
T PRK01710 74 KLD--GFDVIFKTPSMR-IDSPELVKAKEE--G-AYIT-------SEME----EFIKYCPAKVFGVTGS 125 (458)
T ss_pred Hhc--cCCEEEECCCCC-CCchHHHHHHHc--C-CcEE-------echH----HhhhhcCCCEEEEECC
Confidence 343 478776444433 234555555542 3 5664 2222 3444445678889998
No 169
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=79.16 E-value=2.4 Score=45.76 Aligned_cols=109 Identities=21% Similarity=0.345 Sum_probs=73.1
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhccc----cCCCCCHH
Q 007703 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE----HEPVNNLL 404 (592)
Q Consensus 329 l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~----~~~~~~L~ 404 (592)
...-+++|+|.|-+|+--|+..+ |+. .++.++|.+ .+| |....-.|..+ ......++
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~-------glg-----A~Vtild~n----~~r---l~~ldd~f~~rv~~~~st~~~ie 226 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAI-------GLG-----ADVTILDLN----IDR---LRQLDDLFGGRVHTLYSTPSNIE 226 (371)
T ss_pred CCCccEEEECCccccchHHHHHh-------ccC-----CeeEEEecC----HHH---HhhhhHhhCceeEEEEcCHHHHH
Confidence 56789999999999999988654 442 467778764 233 44444445432 12234688
Q ss_pred HHhcccCCcEEEec-----cCCCCCCCHHHHHHHHccC-------CCCceEEecCCCCCCCCCCHHH
Q 007703 405 DAVKVIKPTILIGS-----SGVGRTFTKEVIEAMASFN-------EVKPLILALSNPTSQSECTAEE 459 (592)
Q Consensus 405 e~V~~vkPtvLIG~-----S~~~g~Ft~evv~~Ma~~~-------e~rPIIFaLSNPt~~aEct~e~ 459 (592)
|+|++ .|.+||. +..|.+.|+|+++.|.+-. . .==+|-=|.||+..+-|.++
T Consensus 227 e~v~~--aDlvIgaVLIpgakaPkLvt~e~vk~MkpGsVivDVAiD-qGGc~Et~~~TTh~~PtY~~ 290 (371)
T COG0686 227 EAVKK--ADLVIGAVLIPGAKAPKLVTREMVKQMKPGSVIVDVAID-QGGCFETSHPTTHDDPTYEV 290 (371)
T ss_pred HHhhh--ccEEEEEEEecCCCCceehhHHHHHhcCCCcEEEEEEEc-CCCceeccccccCCCCceee
Confidence 99985 9988886 4556689999999997621 1 22245566778777776654
No 170
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=78.85 E-value=8.6 Score=40.78 Aligned_cols=83 Identities=20% Similarity=0.395 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHhCCCcccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchh
Q 007703 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (592)
Q Consensus 311 aaV~LAgll~Alr~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~ 389 (592)
.-+|-+|++.=++..|.++++++++++|.+ ..|.-+|.||.. .| ..+.+|+|+
T Consensus 137 ~PcTp~avi~lL~~~~i~l~Gk~vvVvGrS~iVGkPla~lL~~-----~~-------atVtichs~-------------- 190 (284)
T PRK14170 137 VPCTPAGIIELIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLN-----EN-------ATVTIAHSR-------------- 190 (284)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CC-------CEEEEeCCC--------------
Confidence 456777888888999999999999999986 578888888753 24 345566542
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007703 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (592)
Q Consensus 390 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 431 (592)
..+|.+.++. +|++|-..|.++.|++++|+
T Consensus 191 ----------T~~l~~~~~~--ADIvI~AvG~~~~i~~~~vk 220 (284)
T PRK14170 191 ----------TKDLPQVAKE--ADILVVATGLAKFVKKDYIK 220 (284)
T ss_pred ----------CCCHHHHHhh--CCEEEEecCCcCccCHHHcC
Confidence 1347788886 99999999999999999997
No 171
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=78.78 E-value=8.7 Score=40.70 Aligned_cols=85 Identities=16% Similarity=0.246 Sum_probs=67.3
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCc
Q 007703 309 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (592)
Q Consensus 309 GTaaV~LAgll~Alr~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~ 387 (592)
+=.-+|-+|++.=++..|.++++++++++|-+ ..|--+|.||.. .| ..+.+|+|+ .
T Consensus 135 ~~~PcTp~avi~lL~~y~i~l~Gk~vvVvGrS~iVGkPla~lL~~-----~~-------atVt~chs~-------T---- 191 (282)
T PRK14166 135 GFLPCTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLN-----AG-------ATVSVCHIK-------T---- 191 (282)
T ss_pred CCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CC-------CEEEEeCCC-------C----
Confidence 44566778888889999999999999999986 578888888854 24 345556553 1
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007703 388 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (592)
Q Consensus 388 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 431 (592)
++|.+.+++ +|++|-..|.++.|++++|+
T Consensus 192 -------------~nl~~~~~~--ADIvIsAvGkp~~i~~~~vk 220 (282)
T PRK14166 192 -------------KDLSLYTRQ--ADLIIVAAGCVNLLRSDMVK 220 (282)
T ss_pred -------------CCHHHHHhh--CCEEEEcCCCcCccCHHHcC
Confidence 348788886 99999999999999999986
No 172
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=78.67 E-value=6 Score=41.74 Aligned_cols=124 Identities=19% Similarity=0.290 Sum_probs=70.7
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhcc-c--cCCCCCHHHHhc
Q 007703 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-E--HEPVNNLLDAVK 408 (592)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~-~--~~~~~~L~e~V~ 408 (592)
.||.|+|+|..|.++|-.++. .|+ + ++.++|..--+.+++.-++.+ ...+.. . -....++.+ ++
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~-----~g~----~--~VvlvDi~~~l~~g~a~d~~~-~~~~~~~~~~i~~t~d~~~-~~ 68 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAE-----KEL----A--DLVLLDVVEGIPQGKALDMYE-ASPVGGFDTKVTGTNNYAD-TA 68 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHH-----cCC----C--eEEEEeCCCChhHHHHHhhhh-hhhccCCCcEEEecCCHHH-hC
Confidence 489999999999999998764 254 2 499999832221111000100 000000 0 011246766 55
Q ss_pred ccCCcEEEeccCCC---C-C------CC----HHHHHHHHccCCCCceEEecCCCCCCCCCCHHHHhcccc--CcEEEec
Q 007703 409 VIKPTILIGSSGVG---R-T------FT----KEVIEAMASFNEVKPLILALSNPTSQSECTAEEAYTWSK--GRAIFAS 472 (592)
Q Consensus 409 ~vkPtvLIG~S~~~---g-~------Ft----~evv~~Ma~~~e~rPIIFaLSNPt~~aEct~e~A~~wt~--G~aifAs 472 (592)
. .|++|=+.+.+ | . ++ +++++.|.+++. ..+|+-.|||. .....-++++++ -+-+|++
T Consensus 69 ~--aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p-~~~iIv~tNP~---di~t~~~~~~sg~~~~rviG~ 142 (305)
T TIGR01763 69 N--SDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSP-NPIIVVVSNPL---DAMTYVAWQKSGFPKERVIGQ 142 (305)
T ss_pred C--CCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEecCcH---HHHHHHHHHHHCcCHHHEEEe
Confidence 4 78877444432 2 1 23 346666788888 99999999998 344445555531 1236666
Q ss_pred CC
Q 007703 473 GS 474 (592)
Q Consensus 473 GS 474 (592)
|.
T Consensus 143 g~ 144 (305)
T TIGR01763 143 AG 144 (305)
T ss_pred cc
Confidence 63
No 173
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=78.48 E-value=7 Score=42.60 Aligned_cols=23 Identities=17% Similarity=0.447 Sum_probs=20.6
Q ss_pred ccceEEEeCcChHHHHHHHHHHH
Q 007703 330 AEHRFLFLGAGEAGTGIAELIAL 352 (592)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~ 352 (592)
...||.|+|||+-|+.+|..+..
T Consensus 10 ~~~ki~ViGaG~wGtAlA~~l~~ 32 (365)
T PTZ00345 10 GPLKVSVIGSGNWGSAISKVVGE 32 (365)
T ss_pred CCCeEEEECCCHHHHHHHHHHHh
Confidence 45799999999999999999875
No 174
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=78.44 E-value=5.4 Score=42.69 Aligned_cols=31 Identities=19% Similarity=0.312 Sum_probs=25.1
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcc
Q 007703 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (592)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~ 374 (592)
.||.|+|+|..|.|||..++.+ |. ++.++|.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~a-----G~-------~V~l~D~ 38 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAH-----GL-------DVVAWDP 38 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhC-----CC-------eEEEEeC
Confidence 5899999999999999998753 64 5666665
No 175
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=78.25 E-value=2.1 Score=49.99 Aligned_cols=40 Identities=25% Similarity=0.398 Sum_probs=34.8
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCc
Q 007703 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (592)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GL 377 (592)
.+|++.||+++|||.-|.-+|+.|+.+ |+ ++|.+||.+-+
T Consensus 334 ekL~~~kVLIvGaGGLGs~VA~~La~~-----GV------g~ItlVD~D~V 373 (664)
T TIGR01381 334 ERYSQLKVLLLGAGTLGCNVARCLIGW-----GV------RHITFVDNGKV 373 (664)
T ss_pred HHHhcCeEEEECCcHHHHHHHHHHHHc-----CC------CeEEEEcCCEE
Confidence 457899999999999999999999875 87 79999998643
No 176
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=78.18 E-value=0.9 Score=51.31 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=21.4
Q ss_pred ccceEEEeCcChHHHHHHHHHHHH
Q 007703 330 AEHRFLFLGAGEAGTGIAELIALE 353 (592)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~ 353 (592)
+.-+|+|+|||-||+..|++|.+.
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~~ 37 (501)
T KOG0029|consen 14 KKKKVIVIGAGLAGLSAARQLQDF 37 (501)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHc
Confidence 345899999999999999999885
No 177
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=78.08 E-value=23 Score=37.00 Aligned_cols=46 Identities=24% Similarity=0.291 Sum_probs=28.8
Q ss_pred HHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcc
Q 007703 317 GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (592)
Q Consensus 317 gll~Alr~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~ 374 (592)
..+.|++..+. ..+++++|.|+|+.|...+.++. + .|. ++++.+|+
T Consensus 157 ~a~~al~~~~~-~~g~~VlV~G~G~vG~~aiqlak-~----~G~------~~Vi~~~~ 202 (343)
T PRK09880 157 VAIHAAHQAGD-LQGKRVFVSGVGPIGCLIVAAVK-T----LGA------AEIVCADV 202 (343)
T ss_pred HHHHHHHhcCC-CCCCEEEEECCCHHHHHHHHHHH-H----cCC------cEEEEEeC
Confidence 33555655443 36889999999877765554332 2 363 56777765
No 178
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=77.89 E-value=2.5 Score=43.16 Aligned_cols=37 Identities=27% Similarity=0.366 Sum_probs=32.8
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 328 ~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
+|++.+|+++|+|..|.-+|+.|+.+ |+ .+|.++|.+
T Consensus 8 ~L~~~~VlVvG~GGvGs~va~~Lar~-----GV------g~i~LvD~D 44 (231)
T cd00755 8 KLRNAHVAVVGLGGVGSWAAEALARS-----GV------GKLTLIDFD 44 (231)
T ss_pred HHhCCCEEEECCCHHHHHHHHHHHHc-----CC------CEEEEECCC
Confidence 57889999999999999999999764 86 799999987
No 179
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=77.72 E-value=11 Score=39.96 Aligned_cols=100 Identities=24% Similarity=0.360 Sum_probs=62.7
Q ss_pred ceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhcc----cc--CC---CC
Q 007703 332 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH----EH--EP---VN 401 (592)
Q Consensus 332 ~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~----~~--~~---~~ 401 (592)
.||.|+|| |..|..+|..++. .|+ ...+.++|++--+ +.+..++.++.+ .. .. ..
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~-----~g~-----~~~v~lvd~~~~~-----~~l~~~~~dl~d~~~~~~~~~~i~~~~ 65 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAK-----EDV-----VKEINLISRPKSL-----EKLKGLRLDIYDALAAAGIDAEIKISS 65 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHh-----CCC-----CCEEEEEECcccc-----cccccccchhhhchhccCCCcEEEECC
Confidence 37999998 9999999998765 365 2479999985211 112222222211 00 01 12
Q ss_pred CHHHHhcccCCcEEEeccCCC---C-----------CCCHHHHHHHHccCCCCceEEecCCCC
Q 007703 402 NLLDAVKVIKPTILIGSSGVG---R-----------TFTKEVIEAMASFNEVKPLILALSNPT 450 (592)
Q Consensus 402 ~L~e~V~~vkPtvLIG~S~~~---g-----------~Ft~evv~~Ma~~~e~rPIIFaLSNPt 450 (592)
+. +.+++ .|++|=+.+.+ | .+-+++++.|.+++. ..+|+--+||.
T Consensus 66 d~-~~l~~--aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~-~~~viv~~npv 124 (309)
T cd05294 66 DL-SDVAG--SDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAP-DTKILVVTNPV 124 (309)
T ss_pred CH-HHhCC--CCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEeCCch
Confidence 43 45665 88877555432 2 235677888888888 99999999997
No 180
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=77.60 E-value=4.9 Score=41.89 Aligned_cols=117 Identities=20% Similarity=0.391 Sum_probs=68.3
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCcc----CCchhchhhcccc---CCCCCHHHH
Q 007703 334 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD----SLQHFKKPWAHEH---EPVNNLLDA 406 (592)
Q Consensus 334 iv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~----~l~~~k~~fA~~~---~~~~~L~e~ 406 (592)
|.|+|||..|.++|..++. .|+ + .++|+|.+ .++.. ++.+.. .+.... ....+. ++
T Consensus 1 I~IIGaG~vG~~ia~~la~-----~~l----~--eV~L~Di~----e~~~~g~~~dl~~~~-~~~~~~~~I~~t~d~-~~ 63 (300)
T cd01339 1 ISIIGAGNVGATLAQLLAL-----KEL----G--DVVLLDIV----EGLPQGKALDISQAA-PILGSDTKVTGTNDY-ED 63 (300)
T ss_pred CEEECCCHHHHHHHHHHHh-----CCC----c--EEEEEeCC----CcHHHHHHHHHHHhh-hhcCCCeEEEEcCCH-HH
Confidence 5799999999999987764 255 1 69999986 22110 011100 000000 011344 45
Q ss_pred hcccCCcEEEeccCCC---C-----------CCCHHHHHHHHccCCCCceEEecCCCCCCCCCCHHHHhccccCc---EE
Q 007703 407 VKVIKPTILIGSSGVG---R-----------TFTKEVIEAMASFNEVKPLILALSNPTSQSECTAEEAYTWSKGR---AI 469 (592)
Q Consensus 407 V~~vkPtvLIG~S~~~---g-----------~Ft~evv~~Ma~~~e~rPIIFaLSNPt~~aEct~e~A~~wt~G~---ai 469 (592)
++. .|++|=+.+.+ | -.-+++++.|.+++. ..+|+-.|||. ......+++++ |. -+
T Consensus 64 l~d--ADiVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p-~~~iIv~sNP~---di~t~~~~~~s-~~~~~rv 136 (300)
T cd01339 64 IAG--SDVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAP-NAIVIVVTNPL---DVMTYVAYKAS-GFPRNRV 136 (300)
T ss_pred hCC--CCEEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEecCcH---HHHHHHHHHHh-CCCHHHE
Confidence 665 88888333322 2 023478888899998 89999999998 23333444544 32 37
Q ss_pred EecCC
Q 007703 470 FASGS 474 (592)
Q Consensus 470 fAsGS 474 (592)
|++|+
T Consensus 137 iGlgt 141 (300)
T cd01339 137 IGMAG 141 (300)
T ss_pred EEecc
Confidence 77774
No 181
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=77.52 E-value=3.6 Score=38.72 Aligned_cols=32 Identities=22% Similarity=0.379 Sum_probs=25.7
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCC
Q 007703 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (592)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 376 (592)
+|||+|+|.||+..|..+.. .| .++.++|+..
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~-----~~-------~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELAR-----PG-------AKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHH-----TT-------SEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhc-----CC-------CeEEEEeccc
Confidence 69999999999999999873 24 5788886643
No 182
>PRK07574 formate dehydrogenase; Provisional
Probab=77.15 E-value=15 Score=40.35 Aligned_cols=142 Identities=13% Similarity=0.130 Sum_probs=82.9
Q ss_pred CCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhccccCCCCCHHH
Q 007703 326 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLD 405 (592)
Q Consensus 326 g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e 405 (592)
+..|.+++|.|+|.|..|..||+.+... |+ +++.+|+...- . +..+.+ ......+|.|
T Consensus 187 ~~~L~gktVGIvG~G~IG~~vA~~l~~f-----G~-------~V~~~dr~~~~-----~---~~~~~~--g~~~~~~l~e 244 (385)
T PRK07574 187 SYDLEGMTVGIVGAGRIGLAVLRRLKPF-----DV-------KLHYTDRHRLP-----E---EVEQEL--GLTYHVSFDS 244 (385)
T ss_pred ceecCCCEEEEECCCHHHHHHHHHHHhC-----CC-------EEEEECCCCCc-----h---hhHhhc--CceecCCHHH
Confidence 3468999999999999999999988642 64 57788875320 0 000011 0111357999
Q ss_pred HhcccCCcEEEecc----CCCCCCCHHHHHHHHccCCCCceEEecCCCCCCCCCCHHHHhc--cccCcEEEecCCCCCcc
Q 007703 406 AVKVIKPTILIGSS----GVGRTFTKEVIEAMASFNEVKPLILALSNPTSQSECTAEEAYT--WSKGRAIFASGSPFDPF 479 (592)
Q Consensus 406 ~V~~vkPtvLIG~S----~~~g~Ft~evv~~Ma~~~e~rPIIFaLSNPt~~aEct~e~A~~--wt~G~aifAsGSPF~pV 479 (592)
+++. .|+++=.- ..-++|+++.+..|.+ ..++.=.|. .++.-++|+. ...|+.-.|..-=|.+-
T Consensus 245 ll~~--aDvV~l~lPlt~~T~~li~~~~l~~mk~----ga~lIN~aR----G~iVDe~AL~~AL~sG~i~GAaLDV~~~E 314 (385)
T PRK07574 245 LVSV--CDVVTIHCPLHPETEHLFDADVLSRMKR----GSYLVNTAR----GKIVDRDAVVRALESGHLAGYAGDVWFPQ 314 (385)
T ss_pred Hhhc--CCEEEEcCCCCHHHHHHhCHHHHhcCCC----CcEEEECCC----CchhhHHHHHHHHHhCCccEEEEecCCCC
Confidence 9986 88887332 1236899999999975 667776654 4444444431 13566655544222211
Q ss_pred ee-CCeeeCccCCcccccchhhh
Q 007703 480 EY-NGKVFVPGQANNAYIFPGFG 501 (592)
Q Consensus 480 ~~-~G~~~~p~Q~NN~yiFPGig 501 (592)
-. ....+ -+..|+.+-|=++
T Consensus 315 Plp~d~pL--~~~pNvilTPHia 335 (385)
T PRK07574 315 PAPADHPW--RTMPRNGMTPHIS 335 (385)
T ss_pred CCCCCChH--HhCCCeEECCccc
Confidence 00 01000 1334777777665
No 183
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=77.05 E-value=10 Score=37.91 Aligned_cols=91 Identities=15% Similarity=0.244 Sum_probs=51.5
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhh-hcCcEEEEccCCcccCCCccCCchhchhhccccCCCCCHHHHh
Q 007703 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEE-TRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAV 407 (592)
Q Consensus 329 l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~ee-A~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V 407 (592)
.+++||.|+|.|..+ .+|.-+...|.. ++..+- +..-+.+.|..-+++.-- +-..+-.-|++. |.-..
T Consensus 39 ~~~~rI~~~G~GgSa-~~A~~~a~~l~~--~~~~~r~gl~a~~l~~d~~~~ta~a--nd~~~~~~f~~q------l~~~~ 107 (196)
T PRK10886 39 LNGNKILCCGNGTSA-ANAQHFAASMIN--RFETERPSLPAIALNTDNVVLTAIA--NDRLHDEVYAKQ------VRALG 107 (196)
T ss_pred HcCCEEEEEECcHHH-HHHHHHHHHHhc--cccccCCCcceEEecCcHHHHHHHh--ccccHHHHHHHH------HHHcC
Confidence 457899999999887 478777776642 110000 112222333332332211 112344455542 32222
Q ss_pred cccCCcEEEeccCCCCCCCHHHHHHHH
Q 007703 408 KVIKPTILIGSSGVGRTFTKEVIEAMA 434 (592)
Q Consensus 408 ~~vkPtvLIG~S~~~g~Ft~evv~~Ma 434 (592)
-+-|++|+.|..|+ |+++++.+.
T Consensus 108 --~~gDvli~iS~SG~--s~~v~~a~~ 130 (196)
T PRK10886 108 --HAGDVLLAISTRGN--SRDIVKAVE 130 (196)
T ss_pred --CCCCEEEEEeCCCC--CHHHHHHHH
Confidence 35799999999888 899998875
No 184
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=76.64 E-value=1.2 Score=54.20 Aligned_cols=43 Identities=19% Similarity=0.311 Sum_probs=34.2
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
.+|++.||+++|+|..|+-+++.|+.+ |+.-. ...+|.++|-+
T Consensus 415 ~kL~~~kVlvvGaGGlG~e~lknLal~-----Gv~~~-~~G~i~IvD~D 457 (1008)
T TIGR01408 415 QKLQNLNIFLVGCGAIGCEMLKNFALM-----GVGTG-KKGMITVTDPD 457 (1008)
T ss_pred HHHhhCcEEEECCChHHHHHHHHHHHh-----CCCcC-CCCeEEEECCC
Confidence 467889999999999999999999875 65211 13689999987
No 185
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=76.12 E-value=14 Score=39.35 Aligned_cols=141 Identities=16% Similarity=0.202 Sum_probs=79.1
Q ss_pred CCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhccccCCCCCHHH
Q 007703 326 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLD 405 (592)
Q Consensus 326 g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e 405 (592)
|..|.++++.|+|-|..|..||+.+..++ |+ ++...|+.. . .+ ....+ .....+|.|
T Consensus 140 g~~L~gktvGIiG~G~IG~~va~~l~~~f----gm-------~V~~~~~~~----~-~~----~~~~~---~~~~~~l~e 196 (323)
T PRK15409 140 GTDVHHKTLGIVGMGRIGMALAQRAHFGF----NM-------PILYNARRH----H-KE----AEERF---NARYCDLDT 196 (323)
T ss_pred cCCCCCCEEEEEcccHHHHHHHHHHHhcC----CC-------EEEEECCCC----c-hh----hHHhc---CcEecCHHH
Confidence 45689999999999999999999875232 54 455566521 0 00 00011 112247999
Q ss_pred HhcccCCcEEEec----cCCCCCCCHHHHHHHHccCCCCceEEecCCCCCCCCCCHHHHhc-c-ccCcEEEecCCCCC--
Q 007703 406 AVKVIKPTILIGS----SGVGRTFTKEVIEAMASFNEVKPLILALSNPTSQSECTAEEAYT-W-SKGRAIFASGSPFD-- 477 (592)
Q Consensus 406 ~V~~vkPtvLIG~----S~~~g~Ft~evv~~Ma~~~e~rPIIFaLSNPt~~aEct~e~A~~-w-t~G~aifAsGSPF~-- 477 (592)
+++. .|+++=. ....|.|+++.++.|.+ .-++.=.| +.++--|+|+- + .+|+.-.|.=-=|+
T Consensus 197 ll~~--sDvv~lh~plt~~T~~li~~~~l~~mk~----ga~lIN~a----RG~vVde~AL~~AL~~g~i~gAaLDVf~~E 266 (323)
T PRK15409 197 LLQE--SDFVCIILPLTDETHHLFGAEQFAKMKS----SAIFINAG----RGPVVDENALIAALQKGEIHAAGLDVFEQE 266 (323)
T ss_pred HHHh--CCEEEEeCCCChHHhhccCHHHHhcCCC----CeEEEECC----CccccCHHHHHHHHHcCCeeEEEeecCCCC
Confidence 9886 8887621 22237899999999975 55555443 44554444432 1 45665443211111
Q ss_pred cceeCCeeeCccCCcccccchhhhH
Q 007703 478 PFEYNGKVFVPGQANNAYIFPGFGL 502 (592)
Q Consensus 478 pV~~~G~~~~p~Q~NN~yiFPGigl 502 (592)
|...+. . -=...|+.+-|=+|-
T Consensus 267 P~~~~~-p--L~~~~nvilTPHia~ 288 (323)
T PRK15409 267 PLSVDS-P--LLSLPNVVAVPHIGS 288 (323)
T ss_pred CCCCCc-h--hhcCCCEEEcCcCCC
Confidence 110010 0 113458888887763
No 186
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=76.03 E-value=19 Score=40.97 Aligned_cols=195 Identities=16% Similarity=0.128 Sum_probs=107.4
Q ss_pred CCCceeccCC---cchHHHHHHHHHHHHHH------------------hCCCcccceEEEeCcChHHHHHHHHHHHHHHH
Q 007703 298 TTHLVFNDDI---QGTASVVLAGVVAALKL------------------IGGTLAEHRFLFLGAGEAGTGIAELIALEISK 356 (592)
Q Consensus 298 ~~~~~FNDDi---QGTaaV~LAgll~Alr~------------------~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~ 356 (592)
..+++.|--- +.+|=-+++.+|+..|. .|..|.++++.|+|-|..|-.+|+.+..
T Consensus 84 ~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~~vA~~l~~---- 159 (525)
T TIGR01327 84 RGILVVNAPTGNTISAAEHALAMLLAAARNIPQADASLKEGEWDRKAFMGTELYGKTLGVIGLGRIGSIVAKRAKA---- 159 (525)
T ss_pred CCCEEEeCCCcChHHHHHHHHHHHHHHhcCHHHHHHHHHcCCccccccCccccCCCEEEEECCCHHHHHHHHHHHh----
Confidence 4555555321 23455567777766553 2557899999999999999999998864
Q ss_pred hcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEec----cCCCCCCCHHHHHH
Q 007703 357 QTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGS----SGVGRTFTKEVIEA 432 (592)
Q Consensus 357 ~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~----S~~~g~Ft~evv~~ 432 (592)
.|+ +++.+|+.. ... ... .+ ......+|.|+++. .|+++=. ...-+.|+++.+..
T Consensus 160 -fG~-------~V~~~d~~~--~~~------~~~-~~--g~~~~~~l~ell~~--aDvV~l~lPlt~~T~~li~~~~l~~ 218 (525)
T TIGR01327 160 -FGM-------KVLAYDPYI--SPE------RAE-QL--GVELVDDLDELLAR--ADFITVHTPLTPETRGLIGAEELAK 218 (525)
T ss_pred -CCC-------EEEEECCCC--Chh------HHH-hc--CCEEcCCHHHHHhh--CCEEEEccCCChhhccCcCHHHHhc
Confidence 264 588888741 110 000 00 00112478888875 7877621 12346888888888
Q ss_pred HHccCCCCceEEecCCCCCCCCCCHHHHhccccCcEEEecCCCCCcceeCCeeeCccCCcccccchhhhHHHHHhCCccc
Q 007703 433 MASFNEVKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRV 512 (592)
Q Consensus 433 Ma~~~e~rPIIFaLSNPt~~aEct~e~A~~wt~G~aifAsGSPF~pV~~~G~~~~p~Q~NN~yiFPGiglG~~~s~a~~I 512 (592)
|.+ ..++.=.|.-.---|..--+|++ .|+.-.|.=-=|++=-.... .--+..|+.+-|=+|-....+
T Consensus 219 mk~----ga~lIN~aRG~~vde~aL~~aL~--~g~i~gAaLDVf~~EP~~~~--pL~~~~nvi~TPHia~~t~e~----- 285 (525)
T TIGR01327 219 MKK----GVIIVNCARGGIIDEAALYEALE--EGHVRAAALDVFEKEPPTDN--PLFDLDNVIATPHLGASTREA----- 285 (525)
T ss_pred CCC----CeEEEEcCCCceeCHHHHHHHHH--cCCeeEEEEecCCCCCCCCC--hhhcCCCeEECCCccccHHHH-----
Confidence 875 66677666544333333334443 56654442111110000011 112456888889877433322
Q ss_pred CHHHHHHHHHHHHcccCc
Q 007703 513 HDDMLLAASEALAKQVTE 530 (592)
Q Consensus 513 td~m~~aAA~aLA~~v~~ 530 (592)
...|...+++.+-+....
T Consensus 286 ~~~~~~~~~~ni~~~~~g 303 (525)
T TIGR01327 286 QENVATQVAEQVLDALKG 303 (525)
T ss_pred HHHHHHHHHHHHHHHHcC
Confidence 233444455555555443
No 187
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=75.81 E-value=3.2 Score=44.74 Aligned_cols=38 Identities=21% Similarity=0.337 Sum_probs=33.4
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
.+|++.||+|+|+|..|.-+|+.|+.+ |+ ++|.++|.+
T Consensus 24 ~~L~~~~VlivG~GGlGs~~a~~La~~-----Gv------g~i~lvD~D 61 (355)
T PRK05597 24 QSLFDAKVAVIGAGGLGSPALLYLAGA-----GV------GHITIIDDD 61 (355)
T ss_pred HHHhCCeEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 467889999999999999999988764 87 789999997
No 188
>PRK07680 late competence protein ComER; Validated
Probab=75.80 E-value=6 Score=40.46 Aligned_cols=98 Identities=12% Similarity=0.232 Sum_probs=58.6
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCC
Q 007703 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKP 412 (592)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkP 412 (592)
+|.|+|+|..|..+|..+... |.- ...+++++|++ . ++.......|. ......+..++++. +
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~-----g~~---~~~~v~v~~r~----~---~~~~~~~~~~~-g~~~~~~~~~~~~~--a 63 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLES-----GAV---KPSQLTITNRT----P---AKAYHIKERYP-GIHVAKTIEEVISQ--S 63 (273)
T ss_pred EEEEECccHHHHHHHHHHHHC-----CCC---CcceEEEECCC----H---HHHHHHHHHcC-CeEEECCHHHHHHh--C
Confidence 689999999999999887642 420 12467777763 1 11111111110 00112467777764 7
Q ss_pred cEEEeccCCCCCCCHHHHHHHHccC-CCCceEEecCCCCC
Q 007703 413 TILIGSSGVGRTFTKEVIEAMASFN-EVKPLILALSNPTS 451 (592)
Q Consensus 413 tvLIG~S~~~g~Ft~evv~~Ma~~~-e~rPIIFaLSNPt~ 451 (592)
|++| ++..+ ...+++++.++.+- + ..+|..++|+.+
T Consensus 64 DiVi-lav~p-~~~~~vl~~l~~~l~~-~~~iis~~ag~~ 100 (273)
T PRK07680 64 DLIF-ICVKP-LDIYPLLQKLAPHLTD-EHCLVSITSPIS 100 (273)
T ss_pred CEEE-EecCH-HHHHHHHHHHHhhcCC-CCEEEEECCCCC
Confidence 7775 33333 34678888887543 4 678999998763
No 189
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=75.44 E-value=7.8 Score=41.12 Aligned_cols=102 Identities=16% Similarity=0.320 Sum_probs=63.8
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhcc--ccC-CCCCHHHHhcc
Q 007703 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH--EHE-PVNNLLDAVKV 409 (592)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~--~~~-~~~~L~e~V~~ 409 (592)
||.|+|||..|.-+|-+|+. .|+ .+.+.|+|.+-=..++..-+|.+.. .|.. ... ..++ .+.++.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~-----~~~-----~~elvL~Di~~~~a~g~a~DL~~~~-~~~~~~~~~i~~~~-y~~~~~ 68 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALA-----LGL-----FSEIVLIDVNEGVAEGEALDFHHAT-ALTYSTNTKIRAGD-YDDCAD 68 (307)
T ss_pred CEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCcchhhHHHHHHHhhh-ccCCCCCEEEEECC-HHHhCC
Confidence 68999999999999998764 255 3589999974111111111132211 2221 100 0123 456765
Q ss_pred cCCcEEEeccCC---CCCCC--------------HHHHHHHHccCCCCceEEecCCCC
Q 007703 410 IKPTILIGSSGV---GRTFT--------------KEVIEAMASFNEVKPLILALSNPT 450 (592)
Q Consensus 410 vkPtvLIG~S~~---~g~Ft--------------~evv~~Ma~~~e~rPIIFaLSNPt 450 (592)
.|++|=+.+. +| -| +++++.+.+++. ..|++-.|||.
T Consensus 69 --aDivvitaG~~~kpg-~tr~R~dll~~N~~I~~~i~~~i~~~~p-~~i~ivvsNPv 122 (307)
T cd05290 69 --ADIIVITAGPSIDPG-NTDDRLDLAQTNAKIIREIMGNITKVTK-EAVIILITNPL 122 (307)
T ss_pred --CCEEEECCCCCCCCC-CCchHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEecCcH
Confidence 8888855554 33 23 467788888999 99999999997
No 190
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=75.42 E-value=32 Score=34.81 Aligned_cols=95 Identities=12% Similarity=0.198 Sum_probs=52.0
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCC
Q 007703 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKP 412 (592)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkP 412 (592)
||.|+|+|..|..+++-|... |.. .+.+++.|+. . +........+. ......+..|+++. .
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~-----g~~----~~~i~v~~r~----~---~~~~~l~~~~~-~~~~~~~~~~~~~~--a 62 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTS-----PAD----VSEIIVSPRN----A---QIAARLAERFP-KVRIAKDNQAVVDR--S 62 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhC-----CCC----hheEEEECCC----H---HHHHHHHHHcC-CceEeCCHHHHHHh--C
Confidence 689999999999999988642 532 2456666642 1 11222222221 01122467777765 5
Q ss_pred cEEEeccCCCCCCCHHHHHHHHccCCCCceEEecCCCC
Q 007703 413 TILIGSSGVGRTFTKEVIEAMASFNEVKPLILALSNPT 450 (592)
Q Consensus 413 tvLIG~S~~~g~Ft~evv~~Ma~~~e~rPIIFaLSNPt 450 (592)
|++| ++..+.. -+++++... ..+ ..+|+..+-++
T Consensus 63 DvVi-lav~p~~-~~~vl~~l~-~~~-~~~vis~~ag~ 96 (258)
T PRK06476 63 DVVF-LAVRPQI-AEEVLRALR-FRP-GQTVISVIAAT 96 (258)
T ss_pred CEEE-EEeCHHH-HHHHHHHhc-cCC-CCEEEEECCCC
Confidence 6555 3332322 366666552 334 56777766555
No 191
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=75.17 E-value=13 Score=39.65 Aligned_cols=87 Identities=18% Similarity=0.257 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHhCCCcccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchh
Q 007703 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (592)
Q Consensus 311 aaV~LAgll~Alr~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~ 389 (592)
.-+|-.|++.=++..+.+++++++|++|.+ ..|.-+|.||.. .|.+. .-.+.+|.|+
T Consensus 137 ~PcTp~av~~lL~~~~i~l~GK~vvViGrS~iVGkPla~lL~~-----~~~~~---~aTVtvchs~-------------- 194 (293)
T PRK14185 137 VSATPNGILELLKRYHIETSGKKCVVLGRSNIVGKPMAQLMMQ-----KAYPG---DCTVTVCHSR-------------- 194 (293)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHc-----CCCCC---CCEEEEecCC--------------
Confidence 355677888888999999999999999986 578888888754 23210 0124444432
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007703 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (592)
Q Consensus 390 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 431 (592)
.++|.+.+++ +|++|-..|.++.+++++|+
T Consensus 195 ----------T~nl~~~~~~--ADIvIsAvGkp~~i~~~~vk 224 (293)
T PRK14185 195 ----------SKNLKKECLE--ADIIIAALGQPEFVKADMVK 224 (293)
T ss_pred ----------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1368888886 99999999999999999987
No 192
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=75.17 E-value=15 Score=39.83 Aligned_cols=101 Identities=19% Similarity=0.225 Sum_probs=67.3
Q ss_pred chHHHHHHHHHHHHHHh--------------------CCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCc
Q 007703 309 GTASVVLAGVVAALKLI--------------------GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 368 (592)
Q Consensus 309 GTaaV~LAgll~Alr~~--------------------g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~ 368 (592)
-||-.+++-+|.++|.. |..+.++||.|+|.|+.|.-||+.|... | ..
T Consensus 120 ~vAd~~~~lil~~~R~~~~g~~~~~~g~w~~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL~~F-----g-------~~ 187 (336)
T KOG0069|consen 120 DVADLAVSLLLALLRRFSEGNEMVRNGGWGWAGGWPLGYDLEGKTVGILGLGRIGKAIAKRLKPF-----G-------CV 187 (336)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhcCCccccCCccccccccCCEEEEecCcHHHHHHHHhhhhc-----c-------ce
Confidence 57778888888888753 3468899999999999999999988763 2 12
Q ss_pred EEEEccCCcccCCCcc-CCchhchhhccccCCCCCHHHHhcccCCcEEEeccC----CCCCCCHHHHHHHHc
Q 007703 369 ICLVDSKGLIVSSRKD-SLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG----VGRTFTKEVIEAMAS 435 (592)
Q Consensus 369 i~lvD~~GLv~~~R~~-~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~----~~g~Ft~evv~~Ma~ 435 (592)
|. +.+|.. .....+..+|. .-++.|...+ .|+|+=..- .-++|+++.+..|.+
T Consensus 188 i~--------y~~r~~~~~~~~~~~~~~----~~d~~~~~~~--sD~ivv~~pLt~~T~~liNk~~~~~mk~ 245 (336)
T KOG0069|consen 188 IL--------YHSRTQLPPEEAYEYYAE----FVDIEELLAN--SDVIVVNCPLTKETRHLINKKFIEKMKD 245 (336)
T ss_pred ee--------eecccCCchhhHHHhccc----ccCHHHHHhh--CCEEEEecCCCHHHHHHhhHHHHHhcCC
Confidence 33 333321 12233344443 3467777765 888873321 125899999999975
No 193
>PRK08291 ectoine utilization protein EutC; Validated
Probab=75.14 E-value=11 Score=40.06 Aligned_cols=115 Identities=17% Similarity=0.211 Sum_probs=63.5
Q ss_pred HHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhccc
Q 007703 317 GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE 396 (592)
Q Consensus 317 gll~Alr~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~ 396 (592)
|.+++..... -..++++|+|+|..|..++..+... .++ +++.++|+. .. +...+...+.+.
T Consensus 120 ~~~a~~~la~--~~~~~v~IiGaG~~a~~~~~al~~~----~~~------~~V~v~~R~----~~---~a~~l~~~~~~~ 180 (330)
T PRK08291 120 GAVAARHLAR--EDASRAAVIGAGEQARLQLEALTLV----RPI------REVRVWARD----AA---KAEAYAADLRAE 180 (330)
T ss_pred HHHHHHHhCC--CCCCEEEEECCCHHHHHHHHHHHhc----CCC------CEEEEEcCC----HH---HHHHHHHHHhhc
Confidence 4455544432 2347999999999987777766432 243 678888763 21 122333322211
Q ss_pred ----cCCCCCHHHHhcccCCcEEEeccCCC-CCCCHHHHHHHHccCCCCceEEec-CCCCCCCCCCHHH
Q 007703 397 ----HEPVNNLLDAVKVIKPTILIGSSGVG-RTFTKEVIEAMASFNEVKPLILAL-SNPTSQSECTAEE 459 (592)
Q Consensus 397 ----~~~~~~L~e~V~~vkPtvLIG~S~~~-g~Ft~evv~~Ma~~~e~rPIIFaL-SNPt~~aEct~e~ 459 (592)
-....++.++++. .|++|-++... .+|+.+.++. .--|.++ |+-..+-|+.++-
T Consensus 181 ~g~~v~~~~d~~~al~~--aDiVi~aT~s~~p~i~~~~l~~-------g~~v~~vg~d~~~~rEld~~~ 240 (330)
T PRK08291 181 LGIPVTVARDVHEAVAG--ADIIVTTTPSEEPILKAEWLHP-------GLHVTAMGSDAEHKNEIAPAV 240 (330)
T ss_pred cCceEEEeCCHHHHHcc--CCEEEEeeCCCCcEecHHHcCC-------CceEEeeCCCCCCcccCCHHH
Confidence 1123678899975 89998664432 3555555431 2223333 3333456787765
No 194
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=75.02 E-value=37 Score=38.70 Aligned_cols=195 Identities=14% Similarity=0.112 Sum_probs=109.9
Q ss_pred CCCceeccCC---cchHHHHHHHHHHHHHH------------------hCCCcccceEEEeCcChHHHHHHHHHHHHHHH
Q 007703 298 TTHLVFNDDI---QGTASVVLAGVVAALKL------------------IGGTLAEHRFLFLGAGEAGTGIAELIALEISK 356 (592)
Q Consensus 298 ~~~~~FNDDi---QGTaaV~LAgll~Alr~------------------~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~ 356 (592)
..+++.|-.- +.+|=-+++-+|+..|. .|..|.++++.|+|.|..|..+|+.+...
T Consensus 86 ~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~~vA~~l~~f--- 162 (526)
T PRK13581 86 RGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHASLKAGKWERKKFMGVELYGKTLGIIGLGRIGSEVAKRAKAF--- 162 (526)
T ss_pred CCCEEEeCCCCChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCccCccccccCCCEEEEECCCHHHHHHHHHHHhC---
Confidence 4566666421 22455567777777654 24568899999999999999999988642
Q ss_pred hcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEecc----CCCCCCCHHHHHH
Q 007703 357 QTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSS----GVGRTFTKEVIEA 432 (592)
Q Consensus 357 ~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S----~~~g~Ft~evv~~ 432 (592)
|+ +++.+|+.. ++ + ... .+ .-...+|.|+++. .|+++=.- ..-++|+++.+..
T Consensus 163 --G~-------~V~~~d~~~----~~-~---~~~-~~---g~~~~~l~ell~~--aDiV~l~lP~t~~t~~li~~~~l~~ 219 (526)
T PRK13581 163 --GM-------KVIAYDPYI----SP-E---RAA-QL---GVELVSLDELLAR--ADFITLHTPLTPETRGLIGAEELAK 219 (526)
T ss_pred --CC-------EEEEECCCC----Ch-h---HHH-hc---CCEEEcHHHHHhh--CCEEEEccCCChHhhcCcCHHHHhc
Confidence 64 688888742 11 0 000 00 0011268888886 78776321 2236899999998
Q ss_pred HHccCCCCceEEecCCCCCCCCCCHHHHhccccCcEEEecCCCCCcceeCCeeeCccCCcccccchhhhHHHHHhCCccc
Q 007703 433 MASFNEVKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRV 512 (592)
Q Consensus 433 Ma~~~e~rPIIFaLSNPt~~aEct~e~A~~wt~G~aifAsGSPF~pV~~~G~~~~p~Q~NN~yiFPGiglG~~~s~a~~I 512 (592)
|.+ ..++.=.|.-..--|..--+|++ .|+.-.|.=-=|++--..... --+..|+.+-|=+|-...- -
T Consensus 220 mk~----ga~lIN~aRG~~vde~aL~~aL~--~g~i~gAaLDVf~~EP~~~~p--L~~~~nvilTPHia~~t~e-----~ 286 (526)
T PRK13581 220 MKP----GVRIINCARGGIIDEAALAEALK--SGKVAGAALDVFEKEPPTDSP--LFELPNVVVTPHLGASTAE-----A 286 (526)
T ss_pred CCC----CeEEEECCCCceeCHHHHHHHHh--cCCeeEEEEecCCCCCCCCch--hhcCCCeeEcCccccchHH-----H
Confidence 875 66777666544333333334443 566543321111100000111 1234589999988743322 2
Q ss_pred CHHHHHHHHHHHHcccCcc
Q 007703 513 HDDMLLAASEALAKQVTEE 531 (592)
Q Consensus 513 td~m~~aAA~aLA~~v~~~ 531 (592)
...|...+++.+......+
T Consensus 287 ~~~~~~~~~~ni~~~~~g~ 305 (526)
T PRK13581 287 QENVAIQVAEQVIDALRGG 305 (526)
T ss_pred HHHHHHHHHHHHHHHHcCC
Confidence 3445555666666655443
No 195
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=74.98 E-value=1.4 Score=49.51 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=22.0
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHH
Q 007703 327 GTLAEHRFLFLGAGEAGTGIAELIAL 352 (592)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~ 352 (592)
+...+.||||+|||.||++-|.-|++
T Consensus 17 ~~~~~~kIvIIGAG~AGLaAA~rLle 42 (498)
T KOG0685|consen 17 KARGNAKIVIIGAGIAGLAAATRLLE 42 (498)
T ss_pred hccCCceEEEECCchHHHHHHHHHHH
Confidence 34456699999999999999999984
No 196
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=74.97 E-value=3.6 Score=43.08 Aligned_cols=41 Identities=24% Similarity=0.331 Sum_probs=34.8
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcc
Q 007703 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 378 (592)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv 378 (592)
.+|++.+|+|+|+|..|.-+|+.|+.+ |+ ++|.++|.+=+-
T Consensus 26 ~kL~~s~VlVvG~GGVGs~vae~Lar~-----GV------g~itLiD~D~V~ 66 (268)
T PRK15116 26 QLFADAHICVVGIGGVGSWAAEALART-----GI------GAITLIDMDDVC 66 (268)
T ss_pred HHhcCCCEEEECcCHHHHHHHHHHHHc-----CC------CEEEEEeCCEec
Confidence 468899999999999999999988864 76 789999987443
No 197
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=74.78 E-value=8.3 Score=43.65 Aligned_cols=102 Identities=19% Similarity=0.145 Sum_probs=53.4
Q ss_pred cCCcEEEeccCCCCCCCHHHHHHHHccCCCCceEEecCCCCC---CCC-----CCHHHHhccccCcEEE-ecCCCCCcce
Q 007703 410 IKPTILIGSSGVGRTFTKEVIEAMASFNEVKPLILALSNPTS---QSE-----CTAEEAYTWSKGRAIF-ASGSPFDPFE 480 (592)
Q Consensus 410 vkPtvLIG~S~~~g~Ft~evv~~Ma~~~e~rPIIFaLSNPt~---~aE-----ct~e~A~~wt~G~aif-AsGSPF~pV~ 480 (592)
.+|+++|...+. .++.+-+.+-.++-+ |=+-+-.-||.. ..| -|.++++++.. .++ .-|. .||.
T Consensus 112 ~~~~ailasntS--tl~i~~la~~~~~p~-r~~G~hff~Pa~v~~LvEvv~g~~Ts~~~~~~~~--~l~~~lgk--~pv~ 184 (507)
T PRK08268 112 VSPDCILATNTS--SLSITAIAAALKHPE-RVAGLHFFNPVPLMKLVEVVSGLATDPAVADALY--ALARAWGK--TPVR 184 (507)
T ss_pred CCCCcEEEECCC--CCCHHHHHhhcCCcc-cEEEEeecCCcccCeeEEEeCCCCCCHHHHHHHH--HHHHHcCC--ceEE
Confidence 478888874332 233443333333333 446677777643 222 23445444321 000 0111 1222
Q ss_pred eCCeeeCccCCcccccchhhhHHHHHhCCcccCHHHHHHHH
Q 007703 481 YNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAAS 521 (592)
Q Consensus 481 ~~G~~~~p~Q~NN~yiFPGiglG~~~s~a~~Itd~m~~aAA 521 (592)
.+ ..||-.+|-.++|.+.=+..+...--++.+-+.++-
T Consensus 185 v~---d~pGfi~Nrll~~~~~Ea~~l~~~g~~~~~~iD~al 222 (507)
T PRK08268 185 AK---DTPGFIVNRAARPYYTEALRVLEEGVADPATIDAIL 222 (507)
T ss_pred ec---CCCChHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 21 246788999999988888777766656666666554
No 198
>PRK06487 glycerate dehydrogenase; Provisional
Probab=74.72 E-value=51 Score=35.03 Aligned_cols=186 Identities=16% Similarity=0.120 Sum_probs=106.6
Q ss_pred CCCceeccCC---cchHHHHHHHHHHHHHHh------------------------CCCcccceEEEeCcChHHHHHHHHH
Q 007703 298 TTHLVFNDDI---QGTASVVLAGVVAALKLI------------------------GGTLAEHRFLFLGAGEAGTGIAELI 350 (592)
Q Consensus 298 ~~~~~FNDDi---QGTaaV~LAgll~Alr~~------------------------g~~l~d~riv~~GAGsAg~GIA~ll 350 (592)
..+.+.|--- +.+|=-+++-+|+..|.. +..|.++++.|+|-|..|--||+++
T Consensus 88 ~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~vA~~l 167 (317)
T PRK06487 88 RGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGELGGAVARLA 167 (317)
T ss_pred CCCEEEeCCCCCcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEEEECCCHHHHHHHHHH
Confidence 3555555321 345556677777765532 2358899999999999999999988
Q ss_pred HHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEe----ccCCCCCCC
Q 007703 351 ALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIG----SSGVGRTFT 426 (592)
Q Consensus 351 ~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG----~S~~~g~Ft 426 (592)
.. + |+ +++.+|+.+ ..+ . + ...+|.|+++. .|+++= +....|.|+
T Consensus 168 ~~-f----gm-------~V~~~~~~~-----~~~-------~-~----~~~~l~ell~~--sDiv~l~lPlt~~T~~li~ 216 (317)
T PRK06487 168 EA-F----GM-------RVLIGQLPG-----RPA-------R-P----DRLPLDELLPQ--VDALTLHCPLTEHTRHLIG 216 (317)
T ss_pred hh-C----CC-------EEEEECCCC-----Ccc-------c-c----cccCHHHHHHh--CCEEEECCCCChHHhcCcC
Confidence 53 2 64 566777642 100 0 0 12379999886 888873 233357999
Q ss_pred HHHHHHHHccCCCCceEEecCCCCCCCCCCHHHHh--ccccCcEEEecCCCCC--cceeCCeeeCccCCcccccchhhhH
Q 007703 427 KEVIEAMASFNEVKPLILALSNPTSQSECTAEEAY--TWSKGRAIFASGSPFD--PFEYNGKVFVPGQANNAYIFPGFGL 502 (592)
Q Consensus 427 ~evv~~Ma~~~e~rPIIFaLSNPt~~aEct~e~A~--~wt~G~aifAsGSPF~--pV~~~G~~~~p~Q~NN~yiFPGigl 502 (592)
++.+..|.+ ..++.=.|. .++--|+|+ .-.+|+.-.|.=-=|. |.. .+..+.--+..|+++-|=+|-
T Consensus 217 ~~~~~~mk~----ga~lIN~aR----G~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~-~~~pl~~~~~pnvilTPHia~ 287 (317)
T PRK06487 217 ARELALMKP----GALLINTAR----GGLVDEQALADALRSGHLGGAATDVLSVEPPV-NGNPLLAPDIPRLIVTPHSAW 287 (317)
T ss_pred HHHHhcCCC----CeEEEECCC----ccccCHHHHHHHHHcCCeeEEEeecCCCCCCC-CCCchhhcCCCCEEECCcccc
Confidence 999999975 566665443 444444444 1236666444221111 111 111111003568999998872
Q ss_pred HHHHhCCcccCHHHHHHHHHHHHccc
Q 007703 503 GLVISGAIRVHDDMLLAASEALAKQV 528 (592)
Q Consensus 503 G~~~s~a~~Itd~m~~aAA~aLA~~v 528 (592)
.. ..-...|...+++.|....
T Consensus 288 ~t-----~e~~~~~~~~~~~ni~~~~ 308 (317)
T PRK06487 288 GS-----REARQRIVGQLAENARAFF 308 (317)
T ss_pred CC-----HHHHHHHHHHHHHHHHHHH
Confidence 22 2223344555555555544
No 199
>PLN03139 formate dehydrogenase; Provisional
Probab=74.17 E-value=23 Score=39.06 Aligned_cols=142 Identities=16% Similarity=0.084 Sum_probs=83.5
Q ss_pred CCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhccccCCCCCHHH
Q 007703 326 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLD 405 (592)
Q Consensus 326 g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e 405 (592)
+..|.+.+|.|+|.|..|..+|+.+... |+ +++.+|+...- .+ ..+..-+ ....+|.|
T Consensus 194 ~~~L~gktVGIVG~G~IG~~vA~~L~af-----G~-------~V~~~d~~~~~----~~---~~~~~g~---~~~~~l~e 251 (386)
T PLN03139 194 AYDLEGKTVGTVGAGRIGRLLLQRLKPF-----NC-------NLLYHDRLKMD----PE---LEKETGA---KFEEDLDA 251 (386)
T ss_pred CcCCCCCEEEEEeecHHHHHHHHHHHHC-----CC-------EEEEECCCCcc----hh---hHhhcCc---eecCCHHH
Confidence 4569999999999999999999998642 64 57778875320 00 0110001 12247999
Q ss_pred HhcccCCcEEEeccC----CCCCCCHHHHHHHHccCCCCceEEecCCCCCCCCCCHHHHh-cc-ccCcEEEecCCCCCcc
Q 007703 406 AVKVIKPTILIGSSG----VGRTFTKEVIEAMASFNEVKPLILALSNPTSQSECTAEEAY-TW-SKGRAIFASGSPFDPF 479 (592)
Q Consensus 406 ~V~~vkPtvLIG~S~----~~g~Ft~evv~~Ma~~~e~rPIIFaLSNPt~~aEct~e~A~-~w-t~G~aifAsGSPF~pV 479 (592)
+++. .|+++=..- .-++|+++.+..|.+ .-+++=.| +.++.-|+|+ +. ..|+.-.|..-=|.+-
T Consensus 252 ll~~--sDvV~l~lPlt~~T~~li~~~~l~~mk~----ga~lIN~a----RG~iVDe~AL~~AL~sG~l~GAaLDV~~~E 321 (386)
T PLN03139 252 MLPK--CDVVVINTPLTEKTRGMFNKERIAKMKK----GVLIVNNA----RGAIMDTQAVADACSSGHIGGYGGDVWYPQ 321 (386)
T ss_pred HHhh--CCEEEEeCCCCHHHHHHhCHHHHhhCCC----CeEEEECC----CCchhhHHHHHHHHHcCCceEEEEcCCCCC
Confidence 9976 788773211 136899999999975 55666544 3444444443 22 3566665655433221
Q ss_pred ee-CCeeeCccCCcccccchhhh
Q 007703 480 EY-NGKVFVPGQANNAYIFPGFG 501 (592)
Q Consensus 480 ~~-~G~~~~p~Q~NN~yiFPGig 501 (592)
-. ... .--+..|+.+-|=++
T Consensus 322 Plp~d~--pL~~~pNvilTPHia 342 (386)
T PLN03139 322 PAPKDH--PWRYMPNHAMTPHIS 342 (386)
T ss_pred CCCCCC--hhhcCCCeEEccccc
Confidence 11 000 011345888888776
No 200
>PRK05442 malate dehydrogenase; Provisional
Probab=73.80 E-value=20 Score=38.41 Aligned_cols=110 Identities=15% Similarity=0.090 Sum_probs=63.4
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcc--cCCCccCCchhchhhccccCCCCCHHHHhcc
Q 007703 333 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI--VSSRKDSLQHFKKPWAHEHEPVNNLLDAVKV 409 (592)
Q Consensus 333 riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv--~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~ 409 (592)
||.|+|| |..|..+|-.|+.. |+-...-...|.|+|.+.-. .++..-+|.+...++-+...-..+..+.+++
T Consensus 6 KV~IiGaaG~VG~~~a~~l~~~-----~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~d 80 (326)
T PRK05442 6 RVAVTGAAGQIGYSLLFRIASG-----DMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKD 80 (326)
T ss_pred EEEEECCCcHHHHHHHHHHHhh-----hhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCC
Confidence 8999998 99999998876653 33100001389999985311 1111112333332332211111345677776
Q ss_pred cCCcEEEeccCC---CCC-----------CCHHHHHHHHccC-CCCceEEecCCCC
Q 007703 410 IKPTILIGSSGV---GRT-----------FTKEVIEAMASFN-EVKPLILALSNPT 450 (592)
Q Consensus 410 vkPtvLIG~S~~---~g~-----------Ft~evv~~Ma~~~-e~rPIIFaLSNPt 450 (592)
.|++|=+.+. +|- .=+++.+.+.+++ . ..||+-.|||.
T Consensus 81 --aDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~-~~iiivvsNPv 133 (326)
T PRK05442 81 --ADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAAR-DVKVLVVGNPA 133 (326)
T ss_pred --CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCC-CeEEEEeCCch
Confidence 8888744443 331 1245666777755 7 89999999997
No 201
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=73.70 E-value=14 Score=41.13 Aligned_cols=36 Identities=28% Similarity=0.466 Sum_probs=28.7
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 328 ~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
.+...||+|+|+|-+|.++|+.+.. .|. ++.+.|++
T Consensus 12 ~~~~~~v~v~G~G~sG~a~a~~L~~-----~G~-------~V~~~D~~ 47 (473)
T PRK00141 12 QELSGRVLVAGAGVSGRGIAAMLSE-----LGC-------DVVVADDN 47 (473)
T ss_pred cccCCeEEEEccCHHHHHHHHHHHH-----CCC-------EEEEECCC
Confidence 3566899999999999999999864 363 57888864
No 202
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=73.57 E-value=10 Score=40.25 Aligned_cols=125 Identities=18% Similarity=0.277 Sum_probs=74.2
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhcccc--CCCCCHHHHhcc
Q 007703 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH--EPVNNLLDAVKV 409 (592)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~--~~~~~L~e~V~~ 409 (592)
.||.|+|||..|..+|-.|+. .|+ ...+.|+|.+-=...+-.-+|.+.. +|.... ....+.++ +++
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~-----~~~-----~~el~LiD~~~~~~~g~a~Dl~~~~-~~~~~~~v~~~~dy~~-~~~ 71 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILA-----KGL-----ADELVLVDVVEDKLKGEAMDLQHGS-AFLKNPKIEADKDYSV-TAN 71 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCccHHHHHHHHHHHhh-ccCCCCEEEECCCHHH-hCC
Confidence 599999999999999887754 255 4679999974111111001132222 232211 11134544 665
Q ss_pred cCCcEEEeccCC---CCCCCH------------HHHHHHHccCCCCceEEecCCCCCCCCCCHHHHhccc--cCcEEEec
Q 007703 410 IKPTILIGSSGV---GRTFTK------------EVIEAMASFNEVKPLILALSNPTSQSECTAEEAYTWS--KGRAIFAS 472 (592)
Q Consensus 410 vkPtvLIG~S~~---~g~Ft~------------evv~~Ma~~~e~rPIIFaLSNPt~~aEct~e~A~~wt--~G~aifAs 472 (592)
.|++|=+.+. +| -|. ++++.|.+++. .-+|+-.|||.. ....-+++++ .-+-+|.+
T Consensus 72 --adivvitaG~~~k~g-~~R~dll~~N~~i~~~~~~~i~~~~p-~~~vivvsNP~d---~~t~~~~k~sg~p~~~viG~ 144 (312)
T cd05293 72 --SKVVIVTAGARQNEG-ESRLDLVQRNVDIFKGIIPKLVKYSP-NAILLVVSNPVD---IMTYVAWKLSGLPKHRVIGS 144 (312)
T ss_pred --CCEEEECCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEccChHH---HHHHHHHHHhCCCHHHEEec
Confidence 8988754444 33 233 67778888999 999999999983 4444555543 11236666
Q ss_pred CCC
Q 007703 473 GSP 475 (592)
Q Consensus 473 GSP 475 (592)
|.-
T Consensus 145 gt~ 147 (312)
T cd05293 145 GCN 147 (312)
T ss_pred Cch
Confidence 643
No 203
>PLN02527 aspartate carbamoyltransferase
Probab=73.25 E-value=1.1e+02 Score=32.75 Aligned_cols=131 Identities=17% Similarity=0.192 Sum_probs=80.0
Q ss_pred HHhcCCCeeeeeecCCCchHHHHHHHHcCCCceec--cCCcchHHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHH
Q 007703 270 KQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFN--DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIA 347 (592)
Q Consensus 270 ~~~fGp~~lIqfEDf~~~~Af~lL~ryr~~~~~FN--DDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA 347 (592)
-.+| .++++ .-.+...... -+.+| .++||.| |+...-=.=+||=++.-.+..| ++++.||+++|.+.=+ -++
T Consensus 93 ls~y-~D~iv-iR~~~~~~~~-~~a~~-~~vPVINa~~g~~~HPtQ~LaDl~Ti~e~~g-~l~g~kva~vGD~~~~-rv~ 166 (306)
T PLN02527 93 VEGY-SDIIV-LRHFESGAAR-RAAAT-AEIPVINAGDGPGQHPTQALLDVYTIQREIG-RLDGIKVGLVGDLANG-RTV 166 (306)
T ss_pred HHHh-CcEEE-EECCChhHHH-HHHHh-CCCCEEECCCCCCCChHHHHHHHHHHHHHhC-CcCCCEEEEECCCCCC-hhH
Confidence 3456 44433 4445444433 33454 4789999 4455566667888877766666 5999999999988422 245
Q ss_pred HHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhcccc-C---CCCCHHHHhcccCCcEEEeccCCC
Q 007703 348 ELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH-E---PVNNLLDAVKVIKPTILIGSSGVG 422 (592)
Q Consensus 348 ~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~-~---~~~~L~e~V~~vkPtvLIG~S~~~ 422 (592)
+-++.++.+-.|+ .|.++-.+|+- +++....++++. . ...++.|+|+. .||+.-.+.+.
T Consensus 167 ~Sl~~~~~~~~g~-------~v~~~~P~~~~-------~~~~~~~~~~~~g~~~~~~~d~~~a~~~--aDvvyt~~~q~ 229 (306)
T PLN02527 167 RSLAYLLAKYEDV-------KIYFVAPDVVK-------MKDDIKDYLTSKGVEWEESSDLMEVASK--CDVLYQTRIQR 229 (306)
T ss_pred HHHHHHHHhcCCC-------EEEEECCCccC-------CCHHHHHHHHHcCCEEEEEcCHHHHhCC--CCEEEECCcch
Confidence 5555554432253 57888777761 222222334321 1 12689999997 99999877653
No 204
>PRK06932 glycerate dehydrogenase; Provisional
Probab=73.01 E-value=29 Score=36.90 Aligned_cols=137 Identities=16% Similarity=0.205 Sum_probs=81.7
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhccccCCCCCHHHH
Q 007703 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDA 406 (592)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~ 406 (592)
..|.++++.|+|-|..|--+|+++.. -|+ +++.+|+..- . ... ....+|.|+
T Consensus 143 ~~l~gktvgIiG~G~IG~~va~~l~~-----fg~-------~V~~~~~~~~------~---~~~-------~~~~~l~el 194 (314)
T PRK06932 143 TDVRGSTLGVFGKGCLGTEVGRLAQA-----LGM-------KVLYAEHKGA------S---VCR-------EGYTPFEEV 194 (314)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhc-----CCC-------EEEEECCCcc------c---ccc-------cccCCHHHH
Confidence 46889999999999999999998753 264 4666665310 0 000 112479999
Q ss_pred hcccCCcEEEe----ccCCCCCCCHHHHHHHHccCCCCceEEecCCCCCCCCCCHHHHhc--cccCcEEEecCCCCC--c
Q 007703 407 VKVIKPTILIG----SSGVGRTFTKEVIEAMASFNEVKPLILALSNPTSQSECTAEEAYT--WSKGRAIFASGSPFD--P 478 (592)
Q Consensus 407 V~~vkPtvLIG----~S~~~g~Ft~evv~~Ma~~~e~rPIIFaLSNPt~~aEct~e~A~~--wt~G~aifAsGSPF~--p 478 (592)
++. .|+++= +...-|.|+++.+..|.+ ..++.=.|. .++-=|+|+. -.+|+.-.|.--=|. |
T Consensus 195 l~~--sDiv~l~~Plt~~T~~li~~~~l~~mk~----ga~lIN~aR----G~~Vde~AL~~aL~~g~i~gAaLDV~~~EP 264 (314)
T PRK06932 195 LKQ--ADIVTLHCPLTETTQNLINAETLALMKP----TAFLINTGR----GPLVDEQALLDALENGKIAGAALDVLVKEP 264 (314)
T ss_pred HHh--CCEEEEcCCCChHHhcccCHHHHHhCCC----CeEEEECCC----ccccCHHHHHHHHHcCCccEEEEecCCCCC
Confidence 987 898883 233357999999999975 566665554 4444444442 135665444322221 1
Q ss_pred ceeCCeeeC--ccCCcccccchhhhH
Q 007703 479 FEYNGKVFV--PGQANNAYIFPGFGL 502 (592)
Q Consensus 479 V~~~G~~~~--p~Q~NN~yiFPGigl 502 (592)
...+. .+. --+..|+++-|=+|-
T Consensus 265 ~~~~~-pl~~~~~~~pnvilTPHia~ 289 (314)
T PRK06932 265 PEKDN-PLIQAAKRLPNLLITPHIAW 289 (314)
T ss_pred CCCCC-hhhHhhcCCCCEEECCcccc
Confidence 11110 010 013568888887763
No 205
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=72.96 E-value=16 Score=40.17 Aligned_cols=88 Identities=18% Similarity=0.228 Sum_probs=52.1
Q ss_pred HHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhcc-
Q 007703 317 GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH- 395 (592)
Q Consensus 317 gll~Alr~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~- 395 (592)
-+..++......|.+.|++|+|.+.-.+++++.|.+. .|+.. ..+-+. +.++ +.+.+.-+.+..
T Consensus 276 ~~~~~l~~~~~~l~Gkrvai~g~~~~~~~la~~L~ee----lGm~~-------v~v~t~---~~~~-~~~~~~~~~l~~~ 340 (427)
T PRK02842 276 RARKALEPYRELLRGKRVFFLPDSQLEIPLARFLSRE----CGMEL-------VEVGTP---YLNR-RFLAAELALLPDG 340 (427)
T ss_pred HHHHHHHHhhhhcCCcEEEEECCchhHHHHHHHHHHh----CCCEE-------EEeCCC---CCCH-HHHHHHHHhccCC
Confidence 3455566666778899999999988899999998763 37632 111110 0111 101111111111
Q ss_pred ----ccCCCCCHHHHhcccCCcEEEecc
Q 007703 396 ----EHEPVNNLLDAVKVIKPTILIGSS 419 (592)
Q Consensus 396 ----~~~~~~~L~e~V~~vkPtvLIG~S 419 (592)
+..+...+.+.|+..|||.|||-|
T Consensus 341 ~~v~~~~D~~~l~~~i~~~~pDllig~~ 368 (427)
T PRK02842 341 VRIVEGQDVERQLDRIRALRPDLVVCGL 368 (427)
T ss_pred CEEEECCCHHHHHHHHHHcCCCEEEccC
Confidence 112223468899999999999977
No 206
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=72.93 E-value=17 Score=37.80 Aligned_cols=93 Identities=14% Similarity=0.195 Sum_probs=55.9
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhccc-cCCCCCHHHHhcccC
Q 007703 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEPVNNLLDAVKVIK 411 (592)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~-~~~~~~L~e~V~~vk 411 (592)
||-|+|.|..|..+|+-+... | .+++++|++. ++ .+. ++.. .....++.|+++..+
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~-----g-------~~v~v~dr~~----~~---~~~----~~~~g~~~~~s~~~~~~~~~ 58 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLRED-----G-------HEVVGYDVNQ----EA---VDV----AGKLGITARHSLEELVSKLE 58 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhC-----C-------CEEEEEECCH----HH---HHH----HHHCCCeecCCHHHHHHhCC
Confidence 689999999999999988652 5 3577777631 11 111 2111 122357778877643
Q ss_pred -CcEEEeccCCCCCCCHHHHHHHHcc-CCCCceEEecCCCC
Q 007703 412 -PTILIGSSGVGRTFTKEVIEAMASF-NEVKPLILALSNPT 450 (592)
Q Consensus 412 -PtvLIG~S~~~g~Ft~evv~~Ma~~-~e~rPIIFaLSNPt 450 (592)
++++|= +.......+++++.+... .+ ..+|.=+|+-.
T Consensus 59 ~advVi~-~vp~~~~~~~v~~~i~~~l~~-g~ivid~st~~ 97 (299)
T PRK12490 59 APRTIWV-MVPAGEVTESVIKDLYPLLSP-GDIVVDGGNSR 97 (299)
T ss_pred CCCEEEE-EecCchHHHHHHHHHhccCCC-CCEEEECCCCC
Confidence 566652 232333566777666543 34 67888887643
No 207
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=72.72 E-value=15 Score=38.90 Aligned_cols=85 Identities=18% Similarity=0.227 Sum_probs=66.3
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCc
Q 007703 309 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 387 (592)
Q Consensus 309 GTaaV~LAgll~Alr~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~ 387 (592)
+=.-+|-.|++.=++..|.+|++.+++++|.+ ..|.-+|.||.. .| ..+.+|+++ .
T Consensus 136 ~~~PcTp~aii~lL~~y~i~l~Gk~vvViGrS~~VGkPla~lL~~-----~~-------ATVt~chs~-------T---- 192 (282)
T PRK14180 136 CLESCTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLN-----AK-------ATVTTCHRF-------T---- 192 (282)
T ss_pred CcCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CC-------CEEEEEcCC-------C----
Confidence 33566788888889999999999999999986 578888888854 24 245555542 1
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007703 388 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (592)
Q Consensus 388 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 431 (592)
++|.+.+++ +|++|-..|.++.|++++|+
T Consensus 193 -------------~dl~~~~k~--ADIvIsAvGkp~~i~~~~vk 221 (282)
T PRK14180 193 -------------TDLKSHTTK--ADILIVAVGKPNFITADMVK 221 (282)
T ss_pred -------------CCHHHHhhh--cCEEEEccCCcCcCCHHHcC
Confidence 256677776 99999999999999999986
No 208
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=72.63 E-value=9.6 Score=42.90 Aligned_cols=97 Identities=19% Similarity=0.192 Sum_probs=63.1
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhccc---cCCCCCHHHHhcc
Q 007703 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE---HEPVNNLLDAVKV 409 (592)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~---~~~~~~L~e~V~~ 409 (592)
+|-|+|.|..|..+|..|... |. +++++|++ .++ .++....-.+. .....++.|+++.
T Consensus 3 ~IgvIGLG~MG~~lA~nL~~~-----G~-------~V~v~dr~----~~~---~~~l~~~~~~~g~~i~~~~s~~e~v~~ 63 (470)
T PTZ00142 3 DIGLIGLAVMGQNLALNIASR-----GF-------KISVYNRT----YEK---TEEFVKKAKEGNTRVKGYHTLEELVNS 63 (470)
T ss_pred EEEEEeEhHHHHHHHHHHHHC-----CC-------eEEEEeCC----HHH---HHHHHHhhhhcCCcceecCCHHHHHhc
Confidence 689999999999999998753 63 58888873 221 22222110000 1134689999986
Q ss_pred c-CCcEEEeccCCCCCCCHHHHHHHHcc-CCCCceEEecCCCC
Q 007703 410 I-KPTILIGSSGVGRTFTKEVIEAMASF-NEVKPLILALSNPT 450 (592)
Q Consensus 410 v-kPtvLIG~S~~~g~Ft~evv~~Ma~~-~e~rPIIFaLSNPt 450 (592)
. +|+++| +.-+++...++|++.+... .+ ..||.=+||=.
T Consensus 64 l~~~d~Ii-l~v~~~~~v~~vi~~l~~~L~~-g~iIID~gn~~ 104 (470)
T PTZ00142 64 LKKPRKVI-LLIKAGEAVDETIDNLLPLLEK-GDIIIDGGNEW 104 (470)
T ss_pred CCCCCEEE-EEeCChHHHHHHHHHHHhhCCC-CCEEEECCCCC
Confidence 5 688555 3444556788888887654 45 78899899843
No 209
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=72.18 E-value=16 Score=38.77 Aligned_cols=83 Identities=25% Similarity=0.346 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHhCCCcccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchh
Q 007703 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (592)
Q Consensus 311 aaV~LAgll~Alr~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~ 389 (592)
.-+|-.|++.=++..|.++++.+++++|.+ ..|.-+|.||.. .| ..+.+|.|+ .
T Consensus 135 ~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~-------aTVtichs~-------T------ 189 (287)
T PRK14173 135 EPCTPAGVVRLLKHYGIPLAGKEVVVVGRSNIVGKPLAALLLR-----ED-------ATVTLAHSK-------T------ 189 (287)
T ss_pred CCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHH-----CC-------CEEEEeCCC-------C------
Confidence 356777888888999999999999999975 678888888864 24 245555442 1
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007703 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (592)
Q Consensus 390 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 431 (592)
.+|.+.+++ +|++|-..|.++.+++++|+
T Consensus 190 -----------~~l~~~~~~--ADIvIsAvGkp~~i~~~~vk 218 (287)
T PRK14173 190 -----------QDLPAVTRR--ADVLVVAVGRPHLITPEMVR 218 (287)
T ss_pred -----------CCHHHHHhh--CCEEEEecCCcCccCHHHcC
Confidence 347788886 99999999999999999986
No 210
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=72.00 E-value=20 Score=38.32 Aligned_cols=135 Identities=17% Similarity=0.160 Sum_probs=77.5
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcc--cCCCccCCchhchhhccccCCCCCHHHHhcc
Q 007703 333 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI--VSSRKDSLQHFKKPWAHEHEPVNNLLDAVKV 409 (592)
Q Consensus 333 riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv--~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~ 409 (592)
||.|.|| |..|..+|..|+. .|+-..+..-.+.|+|.+.-. .+...-+|.+...++...-....+..+.+++
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~-----~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~ 75 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIAR-----GRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTD 75 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHh-----ccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCC
Confidence 6899999 9999999988764 244100001168999974221 1111112333332222111111245677776
Q ss_pred cCCcEEEeccCCC---CC-C----------CHHHHHHHHccC-CCCceEEecCCCCCCCCCCHHHHhccccC--cEEEec
Q 007703 410 IKPTILIGSSGVG---RT-F----------TKEVIEAMASFN-EVKPLILALSNPTSQSECTAEEAYTWSKG--RAIFAS 472 (592)
Q Consensus 410 vkPtvLIG~S~~~---g~-F----------t~evv~~Ma~~~-e~rPIIFaLSNPt~~aEct~e~A~~wt~G--~aifAs 472 (592)
.|++|=+.+.+ |- . =+++.+.|++++ . .-||+-.|||. .+..--+++++.+ +-+|.|
T Consensus 76 --aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~-~~iiivvsNPv---Dv~t~v~~~~sg~~~~~vig~ 149 (324)
T TIGR01758 76 --VDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKK-DCKVLVVGNPA---NTNALVLSNYAPSIPPKNFSA 149 (324)
T ss_pred --CCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCC-CeEEEEeCCcH---HHHHHHHHHHcCCCCcceEEE
Confidence 88888555554 21 1 246778888884 8 89999999997 3444455555532 227788
Q ss_pred CCCCCc
Q 007703 473 GSPFDP 478 (592)
Q Consensus 473 GSPF~p 478 (592)
|+=.+.
T Consensus 150 gt~LDs 155 (324)
T TIGR01758 150 LTRLDH 155 (324)
T ss_pred eeehHH
Confidence 865443
No 211
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=71.98 E-value=7.7 Score=32.20 Aligned_cols=35 Identities=26% Similarity=0.482 Sum_probs=29.2
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCccc
Q 007703 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIV 379 (592)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~ 379 (592)
|++|+|+|..|+-+|..+.. .| +++.++++..-+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~-----~g-------~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAE-----LG-------KEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHH-----TT-------SEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHH-----hC-------cEEEEEeccchhh
Confidence 79999999999999998854 24 6889999887766
No 212
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=71.84 E-value=8.3 Score=40.32 Aligned_cols=104 Identities=14% Similarity=0.167 Sum_probs=57.8
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCc-----hhchhhccc-cCCCCCHHH
Q 007703 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ-----HFKKPWAHE-HEPVNNLLD 405 (592)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~-----~~k~~fA~~-~~~~~~L~e 405 (592)
.||.|+|+|..|..+|..+..+ | .+++++|+..-...-+...+. ..+..+... -....++ +
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~-----G-------~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~ 69 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAA-----G-------ADVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-A 69 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhc-----C-------CcEEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccCh-h
Confidence 4799999999999999988763 5 468888874211000000000 000000000 0001233 4
Q ss_pred HhcccCCcEEEeccCCCCCCCHHHHHHHHcc-CCCCceEEecCCCCCCC
Q 007703 406 AVKVIKPTILIGSSGVGRTFTKEVIEAMASF-NEVKPLILALSNPTSQS 453 (592)
Q Consensus 406 ~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~-~e~rPIIFaLSNPt~~a 453 (592)
+++ ++|++|=+.... ..+++++.+.++ .+ ..+|..++|.....
T Consensus 70 ~~~--~~D~vil~vk~~--~~~~~~~~l~~~~~~-~~iii~~~nG~~~~ 113 (341)
T PRK08229 70 ALA--TADLVLVTVKSA--ATADAAAALAGHARP-GAVVVSFQNGVRNA 113 (341)
T ss_pred hcc--CCCEEEEEecCc--chHHHHHHHHhhCCC-CCEEEEeCCCCCcH
Confidence 454 478777443322 358888888765 34 67888889976433
No 213
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=71.72 E-value=18 Score=38.34 Aligned_cols=84 Identities=21% Similarity=0.304 Sum_probs=66.0
Q ss_pred hHHHHHHHHHHHHHHhCCCcccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCch
Q 007703 310 TASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 388 (592)
Q Consensus 310 TaaV~LAgll~Alr~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~ 388 (592)
=.-+|-.|++.=++..|.++++++++++|.+ ..|.-+|.||.. .| ..+.++.|+ .
T Consensus 135 ~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~-------atVtichs~-------T----- 190 (282)
T PRK14169 135 VVASTPYGIMALLDAYDIDVAGKRVVIVGRSNIVGRPLAGLMVN-----HD-------ATVTIAHSK-------T----- 190 (282)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CC-------CEEEEECCC-------C-----
Confidence 3466777888888999999999999999975 578888888854 24 235555442 1
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007703 389 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (592)
Q Consensus 389 ~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 431 (592)
.+|.+.+++ +|++|-..|.++.|+.++|+
T Consensus 191 ------------~~l~~~~~~--ADIvI~AvG~p~~i~~~~vk 219 (282)
T PRK14169 191 ------------RNLKQLTKE--ADILVVAVGVPHFIGADAVK 219 (282)
T ss_pred ------------CCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 357788886 99999999999999999987
No 214
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=71.50 E-value=63 Score=33.84 Aligned_cols=35 Identities=17% Similarity=0.144 Sum_probs=23.5
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcc
Q 007703 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (592)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~ 374 (592)
.+++++|+|+|..|+..+.++... .|- .+++.+|+
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~----~g~------~~vi~~~~ 197 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQI----YPE------SKLVVFGK 197 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHh----cCC------CcEEEEeC
Confidence 478999999998776655555432 131 46887775
No 215
>PRK07411 hypothetical protein; Validated
Probab=71.48 E-value=4.1 Score=44.52 Aligned_cols=38 Identities=24% Similarity=0.342 Sum_probs=33.9
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
.+|++.||+|+|+|.-|.-||+.|+.+ |+ ++|.++|.+
T Consensus 34 ~~L~~~~VlivG~GGlG~~va~~La~~-----Gv------g~l~lvD~D 71 (390)
T PRK07411 34 KRLKAASVLCIGTGGLGSPLLLYLAAA-----GI------GRIGIVDFD 71 (390)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEECCC
Confidence 567899999999999999999999875 87 789999987
No 216
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=71.03 E-value=19 Score=38.16 Aligned_cols=83 Identities=18% Similarity=0.235 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHhCCCcccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchh
Q 007703 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (592)
Q Consensus 311 aaV~LAgll~Alr~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~ 389 (592)
.-+|-.|++.=++..+.++++++++++|-+ ..|.-+|.||.. .| ..+.+|+|+
T Consensus 137 ~PcTp~avi~ll~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~-------AtVtichs~-------------- 190 (282)
T PRK14182 137 RPCTPAGVMRMLDEARVDPKGKRALVVGRSNIVGKPMAMMLLE-----RH-------ATVTIAHSR-------------- 190 (282)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CC-------CEEEEeCCC--------------
Confidence 456777888888999999999999999986 578888887754 23 245555442
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007703 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (592)
Q Consensus 390 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 431 (592)
.++|.+.+++ +|++|-..|.++.+++++|+
T Consensus 191 ----------T~nl~~~~~~--ADIvI~AvGk~~~i~~~~ik 220 (282)
T PRK14182 191 ----------TADLAGEVGR--ADILVAAIGKAELVKGAWVK 220 (282)
T ss_pred ----------CCCHHHHHhh--CCEEEEecCCcCccCHHHcC
Confidence 1357788886 99999999999999999997
No 217
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=70.97 E-value=21 Score=38.03 Aligned_cols=88 Identities=23% Similarity=0.330 Sum_probs=65.8
Q ss_pred hHHHHHHHHHHHHHHhCCCcccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCch
Q 007703 310 TASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 388 (592)
Q Consensus 310 TaaV~LAgll~Alr~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~ 388 (592)
=.-+|-.|++.=++..|.+|++++++++|-+ ..|.-+|.||.. .|... ...+.+|.|+
T Consensus 132 ~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~~~~---~AtVtvchs~------------- 190 (287)
T PRK14181 132 FIPCTPAGIIELLKYYEIPLHGRHVAIVGRSNIVGKPLAALLMQ-----KHPDT---NATVTLLHSQ------------- 190 (287)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHh-----CcCCC---CCEEEEeCCC-------------
Confidence 3456777888888999999999999999976 578888888754 22111 1234444332
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007703 389 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (592)
Q Consensus 389 ~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 431 (592)
.++|.+.+++ +|++|-..|.++.+++|+|+
T Consensus 191 -----------T~~l~~~~~~--ADIvV~AvG~p~~i~~~~ik 220 (287)
T PRK14181 191 -----------SENLTEILKT--ADIIIAAIGVPLFIKEEMIA 220 (287)
T ss_pred -----------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1358888886 99999999999999999997
No 218
>KOG2337 consensus Ubiquitin activating E1 enzyme-like protein [Coenzyme transport and metabolism]
Probab=70.81 E-value=3.6 Score=46.97 Aligned_cols=166 Identities=18% Similarity=0.249 Sum_probs=82.3
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCc-cCCchhchhhccccCCCCCHHHHh
Q 007703 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRK-DSLQHFKKPWAHEHEPVNNLLDAV 407 (592)
Q Consensus 329 l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~-~~l~~~k~~fA~~~~~~~~L~e~V 407 (592)
++..|.+++|||+-|++||+-|+.. |+ ++|.+||.--.-+.+-- .+|-.|----++..+.-.+-...+
T Consensus 338 is~~KcLLLGAGTLGC~VAR~Ll~W-----Gv------RhITFvDn~kVsySNPVRQsLy~FEDc~~~g~~KAe~Aa~rL 406 (669)
T KOG2337|consen 338 ISQTKCLLLGAGTLGCNVARNLLGW-----GV------RHITFVDNGKVSYSNPVRQSLYTFEDCLGGGRPKAETAAQRL 406 (669)
T ss_pred hhcceeEEecCcccchHHHHHHHhh-----cc------ceEEEEecCeeeccchhhhhhhhhhhhhccCCcchHHHHHHH
Confidence 4568999999999999999999887 65 78999997433332210 112222111111111112333445
Q ss_pred cccCCcEE-----EeccCCCCCCCHH-------HHHHHHccCCCCceEEecCCCCCCCCCCHHHHhccccCcEEEecCCC
Q 007703 408 KVIKPTIL-----IGSSGVGRTFTKE-------VIEAMASFNEVKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSP 475 (592)
Q Consensus 408 ~~vkPtvL-----IG~S~~~g~Ft~e-------vv~~Ma~~~e~rPIIFaLSNPt~~aEct~e~A~~wt~G~aifAsGSP 475 (592)
|.+-|.+- +-.-=.|--..++ -++.+.+.-+.+-+||=|.--- -+---|.- +....-+.++-+--=
T Consensus 407 k~IfP~m~atG~~lsIPMpGH~I~e~~~e~~~~D~~~Le~LI~~HDviFLLtDsR-ESRWLPtl-l~a~~~KivINaALG 484 (669)
T KOG2337|consen 407 KEIFPSMEATGYVLSIPMPGHPIGESLLEQTKKDLKRLEQLIKDHDVIFLLTDSR-ESRWLPTL-LAAAKNKIVINAALG 484 (669)
T ss_pred HHhCccccccceEEeccCCCCccchhhHHHHHHHHHHHHHHHhhcceEEEEeccc-hhhhhHHH-HHhhhcceEeeeecc
Confidence 55555432 1122222223332 2222222222278899875321 11111211 122334554433333
Q ss_pred CCccee--CCeee----CccCCcccccchhhhHHHHHh
Q 007703 476 FDPFEY--NGKVF----VPGQANNAYIFPGFGLGLVIS 507 (592)
Q Consensus 476 F~pV~~--~G~~~----~p~Q~NN~yiFPGiglG~~~s 507 (592)
|+...+ .|-.. .-+|.-+.-..||==||+..|
T Consensus 485 FDsylVMRHG~~~~~~~~d~q~s~~~~i~~~qLGCYFC 522 (669)
T KOG2337|consen 485 FDSYLVMRHGTGRKEASDDGQSSDLKCINGDQLGCYFC 522 (669)
T ss_pred cceeEEEecCCCCcccccccccccccccCcccceeEeE
Confidence 776543 34222 225776767778888887654
No 219
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=70.55 E-value=21 Score=37.52 Aligned_cols=106 Identities=13% Similarity=0.229 Sum_probs=61.1
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcC-CChhhhcCcEEEEccCCcccCCCccCCchhchhhccccCCCCCHHHHhccc
Q 007703 332 HRFLFLGAGEAGTGIAELIALEISKQTK-APVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI 410 (592)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G-~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~v 410 (592)
.||.|+|+|..|-.|+.-|... | +. .++|++.|+. .+........|--. ...+..++++.
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~-----g~~~----~~~I~v~~~~-------~e~~~~l~~~~g~~--~~~~~~~~~~~- 62 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKS-----GALP----PEEIIVTNRS-------EEKRAALAAEYGVV--TTTDNQEAVEE- 62 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhc-----CCCC----cceEEEeCCC-------HHHHHHHHHHcCCc--ccCcHHHHHhh-
Confidence 5899999999998888877653 5 32 3678877663 11122233334211 13455666664
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHccCCCCceEEecCCCCCCCCCCHHHHhcccc
Q 007703 411 KPTILIGSSGVGRTFTKEVIEAMASFNEVKPLILALSNPTSQSECTAEEAYTWSK 465 (592)
Q Consensus 411 kPtvLIG~S~~~g~Ft~evv~~Ma~~~e~rPIIFaLSNPt~~aEct~e~A~~wt~ 465 (592)
.|+++ ++-.| ..=++|++.+....+ ..+|..+. |=.+.++.-+|.+
T Consensus 63 -advv~-LavKP-q~~~~vl~~l~~~~~-~~lvISia-----AGv~~~~l~~~l~ 108 (266)
T COG0345 63 -ADVVF-LAVKP-QDLEEVLSKLKPLTK-DKLVISIA-----AGVSIETLERLLG 108 (266)
T ss_pred -CCEEE-EEeCh-HhHHHHHHHhhcccC-CCEEEEEe-----CCCCHHHHHHHcC
Confidence 67666 44444 233466666655445 66666655 3345556555543
No 220
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=70.55 E-value=9.5 Score=36.99 Aligned_cols=36 Identities=28% Similarity=0.404 Sum_probs=23.8
Q ss_pred CcccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 328 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 328 ~l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
++++.+++|.|| |..|..+++.++ + .|. ++++++++
T Consensus 2 ~~~~~~vlItGasg~iG~~l~~~l~----~-~G~-------~V~~~~r~ 38 (251)
T PRK07231 2 RLEGKVAIVTGASSGIGEGIARRFA----A-EGA-------RVVVTDRN 38 (251)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHH----H-CCC-------EEEEEeCC
Confidence 467789999998 445555555543 3 363 58888875
No 221
>PRK06270 homoserine dehydrogenase; Provisional
Probab=70.52 E-value=32 Score=36.85 Aligned_cols=105 Identities=17% Similarity=0.248 Sum_probs=63.0
Q ss_pred ceEEEeCcChHHHHHHHHHHHH---HHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhccccC---------C
Q 007703 332 HRFLFLGAGEAGTGIAELIALE---ISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHE---------P 399 (592)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~---~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~---------~ 399 (592)
.||.++|.|..|.+++++|.+. +.++.|+. -+=.-++|++|.+.+.+.-++... ..|+.... .
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~----~~vvai~d~~~~~~~~~Gi~~~~~-~~~~~~~~~~~~~~~~~~ 77 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLD----LKVVAIADSSGSAIDPDGLDLELA-LKVKEETGKLADYPEGGG 77 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCC----EEEEEEEeCCCcccCcCCCCHHHH-HHHHhccCCcccCccccc
Confidence 4899999999999999998753 22222321 122456799998887653122211 22332211 1
Q ss_pred CCCHHHHhcccCCcEEEeccCC---CCCCCHHHH-HHHHccCCCCceEE
Q 007703 400 VNNLLDAVKVIKPTILIGSSGV---GRTFTKEVI-EAMASFNEVKPLIL 444 (592)
Q Consensus 400 ~~~L~e~V~~vkPtvLIG~S~~---~g~Ft~evv-~~Ma~~~e~rPIIF 444 (592)
..++.|+++...+|++|=++.. ++-...+++ +++.. . .+||.
T Consensus 78 ~~d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~--G-khVVt 123 (341)
T PRK06270 78 EISGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALER--G-KHVVT 123 (341)
T ss_pred cCCHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHC--C-CEEEc
Confidence 2378999988889999977653 122224554 44443 4 67776
No 222
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=70.27 E-value=22 Score=38.05 Aligned_cols=121 Identities=17% Similarity=0.113 Sum_probs=67.2
Q ss_pred ceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcc--cCCCccCCchhchhhccccCCCCCHHHHhc
Q 007703 332 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI--VSSRKDSLQHFKKPWAHEHEPVNNLLDAVK 408 (592)
Q Consensus 332 ~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv--~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~ 408 (592)
-||.|+|| |..|..+|-.|+. .|+-.-.-...+.|+|.+.-. .++..-+|.+..-++-+...-..+..+.++
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~-----~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~ 78 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIAS-----GELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFK 78 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHh-----CCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhC
Confidence 38999998 9999999987764 254110111279999985311 111111133222122211111134567777
Q ss_pred ccCCcEEEeccCCC---CCCC------------HHHHHHHHccC-CCCceEEecCCCCCCCCCCHHHHhccc
Q 007703 409 VIKPTILIGSSGVG---RTFT------------KEVIEAMASFN-EVKPLILALSNPTSQSECTAEEAYTWS 464 (592)
Q Consensus 409 ~vkPtvLIG~S~~~---g~Ft------------~evv~~Ma~~~-e~rPIIFaLSNPt~~aEct~e~A~~wt 464 (592)
+ .|++|=+.+.+ | .| +++++.+++++ + .-||+--|||- ....--+++++
T Consensus 79 d--aDvVVitAG~~~k~g-~tR~dll~~Na~i~~~i~~~i~~~~~~-~~iiivvsNPv---Dv~t~v~~k~s 143 (323)
T TIGR01759 79 D--VDAALLVGAFPRKPG-MERADLLSKNGKIFKEQGKALNKVAKK-DVKVLVVGNPA---NTNALIASKNA 143 (323)
T ss_pred C--CCEEEEeCCCCCCCC-CcHHHHHHHHHHHHHHHHHHHHhhCCC-CeEEEEeCCcH---HHHHHHHHHHc
Confidence 6 89888555543 3 22 34566667666 4 67888889997 33333444444
No 223
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=70.12 E-value=15 Score=45.26 Aligned_cols=115 Identities=16% Similarity=0.228 Sum_probs=59.4
Q ss_pred HHHHHHHHHhCC-------C--cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhc------------Cc---EEE
Q 007703 316 AGVVAALKLIGG-------T--LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETR------------KK---ICL 371 (592)
Q Consensus 316 Agll~Alr~~g~-------~--l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~------------~~---i~l 371 (592)
+.+.+|++..|. | +.--+|||.|+|..|.|-++.+...-.+ =++.++-+ ++ +|-
T Consensus 179 ~~~~~a~~~~G~~i~~~g~p~gv~P~~vVi~G~G~Vg~gA~~i~~~lg~~--~v~~~~l~~l~~~~~~~~~~~~~~~~y~ 256 (1042)
T PLN02819 179 AAAKAAVISVGEEIASSGLPLGICPLVFVFTGSGNVSQGAQEIFKLLPHT--FVEPSKLPELKGISQNKISTKRVYQVYG 256 (1042)
T ss_pred HHHHHHHHhccceeeccCCCCCCCCeEEEEeCCchHHHHHHHHHhhcCCC--ccCHHHHHHHHHhhcCCccccccceeee
Confidence 344556655532 2 3357999999999999999987643111 02222211 11 221
Q ss_pred --EccCCccc-CCCccCCchhchhhccccCCCCCHH-HHhcccCCcEEEecc----CCCCCCCHH-HHHHHHc
Q 007703 372 --VDSKGLIV-SSRKDSLQHFKKPWAHEHEPVNNLL-DAVKVIKPTILIGSS----GVGRTFTKE-VIEAMAS 435 (592)
Q Consensus 372 --vD~~GLv~-~~R~~~l~~~k~~fA~~~~~~~~L~-e~V~~vkPtvLIG~S----~~~g~Ft~e-vv~~Ma~ 435 (592)
+.+.-.+. ++..... ..+..|+|+..=...+. +++.. .|+|||.= ..|.++|++ +++.|.+
T Consensus 257 ~~~~~~~~~~~~~~~~~f-~~~~y~~~Pe~y~s~F~~~~~~~--advlIn~i~~~~~~P~lvt~~~~~~~mk~ 326 (1042)
T PLN02819 257 CVVTSQDMVEHKDPSKQF-DKADYYAHPEHYNPVFHEKIAPY--ASVIVNCMYWEKRFPRLLTTKQLQDLTRK 326 (1042)
T ss_pred eecChHHHhhccCCcccc-chhhhccCchhccchhHHHhHhh--CCEEEeeeecCCCCCceeCHHHHHHhhcC
Confidence 11111111 1100000 11223444322224454 57776 99999984 334579999 8888875
No 224
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=70.10 E-value=6.3 Score=38.33 Aligned_cols=91 Identities=18% Similarity=0.287 Sum_probs=48.2
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhcccc--------------C
Q 007703 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH--------------E 398 (592)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~--------------~ 398 (592)
+|.|+|||..|.|||-+++.+ | -++.++|.+---...-.+.+......+.+.+ .
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~-----G-------~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~ 68 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA-----G-------YEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS 68 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT-----T-------SEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE
T ss_pred CEEEEcCCHHHHHHHHHHHhC-----C-------CcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc
Confidence 689999999999999998864 6 4788888852211000000111000110100 0
Q ss_pred CCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHccCC
Q 007703 399 PVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNE 438 (592)
Q Consensus 399 ~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~e 438 (592)
-..+|.+++ ..|.+|=+-.-.--..+++.+.+.+.+.
T Consensus 69 ~~~dl~~~~---~adlViEai~E~l~~K~~~~~~l~~~~~ 105 (180)
T PF02737_consen 69 FTTDLEEAV---DADLVIEAIPEDLELKQELFAELDEICP 105 (180)
T ss_dssp EESSGGGGC---TESEEEE-S-SSHHHHHHHHHHHHCCS-
T ss_pred cccCHHHHh---hhheehhhccccHHHHHHHHHHHHHHhC
Confidence 114676666 3677776543332456778888887775
No 225
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=70.02 E-value=46 Score=36.79 Aligned_cols=193 Identities=15% Similarity=0.187 Sum_probs=111.1
Q ss_pred cCCCceeccCC---cchHHHHHHHHHHHHHH------------------hCCCcccceEEEeCcChHHHHHHHHHHHHHH
Q 007703 297 GTTHLVFNDDI---QGTASVVLAGVVAALKL------------------IGGTLAEHRFLFLGAGEAGTGIAELIALEIS 355 (592)
Q Consensus 297 r~~~~~FNDDi---QGTaaV~LAgll~Alr~------------------~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~ 355 (592)
+..++++|--- +.+|=-+++.+|+.+|. .|..|.+.++.|+|-|..|..+|+.+...
T Consensus 96 ~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~L~gktvGIiG~G~IG~~vA~~~~~f-- 173 (409)
T PRK11790 96 KRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKSAAGSFEVRGKTLGIVGYGHIGTQLSVLAESL-- 173 (409)
T ss_pred hCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCcccccccCcccCCCCEEEEECCCHHHHHHHHHHHHC--
Confidence 35777777432 23455568888887763 24568999999999999999999987642
Q ss_pred HhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEec----cCCCCCCCHHHHH
Q 007703 356 KQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGS----SGVGRTFTKEVIE 431 (592)
Q Consensus 356 ~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~----S~~~g~Ft~evv~ 431 (592)
|+ +++.+|+.. + ..... + ....+|.|+++. .|+++=. ...-+.|+++.+.
T Consensus 174 ---Gm-------~V~~~d~~~-----~-~~~~~-----~---~~~~~l~ell~~--sDiVslh~Plt~~T~~li~~~~l~ 227 (409)
T PRK11790 174 ---GM-------RVYFYDIED-----K-LPLGN-----A---RQVGSLEELLAQ--SDVVSLHVPETPSTKNMIGAEELA 227 (409)
T ss_pred ---CC-------EEEEECCCc-----c-cccCC-----c---eecCCHHHHHhh--CCEEEEcCCCChHHhhccCHHHHh
Confidence 64 677788631 1 00000 1 123479999986 7887632 1123689999999
Q ss_pred HHHccCCCCceEEecCCCCCCCCCCHHHHhc--cccCcEEEecCCC-C--CcceeCCeee-CccCCcccccchhhhHHHH
Q 007703 432 AMASFNEVKPLILALSNPTSQSECTAEEAYT--WSKGRAIFASGSP-F--DPFEYNGKVF-VPGQANNAYIFPGFGLGLV 505 (592)
Q Consensus 432 ~Ma~~~e~rPIIFaLSNPt~~aEct~e~A~~--wt~G~aifAsGSP-F--~pV~~~G~~~-~p~Q~NN~yiFPGiglG~~ 505 (592)
.|.+ .-++.-.|. .++-=|+|+. ...|+ |.+-|.- | +|..-+.... .--+..|+++-|=+|-...
T Consensus 228 ~mk~----ga~lIN~aR----G~~vde~aL~~aL~~g~-i~gaalDVf~~EP~~~~~~~~~pL~~~~nvilTPHia~~t~ 298 (409)
T PRK11790 228 LMKP----GAILINASR----GTVVDIDALADALKSGH-LAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTPHIGGSTQ 298 (409)
T ss_pred cCCC----CeEEEECCC----CcccCHHHHHHHHHcCC-ceEEEEcCCCCCCCCccccccchhhcCCCEEECCcCCCCHH
Confidence 9975 555665543 4444444431 13566 3322211 1 2221110000 1123468999998884432
Q ss_pred HhCCcccCHHHHHHHHHHHHcccCcc
Q 007703 506 ISGAIRVHDDMLLAASEALAKQVTEE 531 (592)
Q Consensus 506 ~s~a~~Itd~m~~aAA~aLA~~v~~~ 531 (592)
- -...|...+++.+......+
T Consensus 299 e-----a~~~~~~~~~~nl~~~~~~~ 319 (409)
T PRK11790 299 E-----AQENIGLEVAGKLVKYSDNG 319 (409)
T ss_pred H-----HHHHHHHHHHHHHHHHHcCC
Confidence 2 23445555666666655433
No 226
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=69.63 E-value=21 Score=38.11 Aligned_cols=86 Identities=14% Similarity=0.254 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHhCCCcccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhc
Q 007703 312 SVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK 390 (592)
Q Consensus 312 aV~LAgll~Alr~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k 390 (592)
-+|-.|++.=++..+.++++++++++|.+ .-|.-+|.||... +... ...+.+|.|+
T Consensus 138 PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~-----~~~~---~aTVtvchs~--------------- 194 (297)
T PRK14167 138 PCTPHGIQKLLAAAGVDTEGADVVVVGRSDIVGKPMANLLIQK-----ADGG---NATVTVCHSR--------------- 194 (297)
T ss_pred CCCHHHHHHHHHHhCCCCCCCEEEEECCCcccHHHHHHHHhcC-----ccCC---CCEEEEeCCC---------------
Confidence 46777888888999999999999999986 5788888888541 1100 0234444432
Q ss_pred hhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007703 391 KPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (592)
Q Consensus 391 ~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 431 (592)
.++|.+.+++ +|++|-..|.++.++.++|+
T Consensus 195 ---------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik 224 (297)
T PRK14167 195 ---------TDDLAAKTRR--ADIVVAAAGVPELIDGSMLS 224 (297)
T ss_pred ---------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1357888886 99999999999999999997
No 227
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=69.54 E-value=4.4 Score=42.84 Aligned_cols=38 Identities=32% Similarity=0.438 Sum_probs=34.0
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
++|++-+|+++|+|..|.-||+.|+.+ |+ ++|.++|.+
T Consensus 15 ~kL~~s~VLIvG~gGLG~EiaKnLala-----GV------g~itI~D~d 52 (286)
T cd01491 15 KKLQKSNVLISGLGGLGVEIAKNLILA-----GV------KSVTLHDTK 52 (286)
T ss_pred HHHhcCcEEEEcCCHHHHHHHHHHHHc-----CC------CeEEEEcCC
Confidence 457889999999999999999999875 87 899999987
No 228
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=69.52 E-value=5.4 Score=37.79 Aligned_cols=30 Identities=20% Similarity=0.392 Sum_probs=20.6
Q ss_pred EEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 335 LFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 335 v~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
+|+|||.||+..|-.|.+ .|+ +.+.++|+.
T Consensus 1 ~IIGaG~aGl~~a~~l~~-----~g~------~~v~v~e~~ 30 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLE-----RGI------DPVVVLERN 30 (203)
T ss_dssp EEE--SHHHHHHHHHHHH-----TT---------EEEEESS
T ss_pred CEECcCHHHHHHHHHHHh-----CCC------CcEEEEeCC
Confidence 689999999999977754 375 348889987
No 229
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=69.47 E-value=12 Score=39.14 Aligned_cols=102 Identities=16% Similarity=0.132 Sum_probs=59.0
Q ss_pred cccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCch-h----chhhcc-ccCCCC
Q 007703 329 LAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH-F----KKPWAH-EHEPVN 401 (592)
Q Consensus 329 l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~-~----k~~fA~-~~~~~~ 401 (592)
+++.+|+|.|| |-.|..+++.|++ .| .+++.+|++.- .. ....+ . +..+.. +-.+..
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~-----~G-------~~V~~~~r~~~---~~-~~~~~~~~~~~~~~~~~~Dl~~~~ 65 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLE-----LG-------AEVYGYSLDPP---TS-PNLFELLNLAKKIEDHFGDIRDAA 65 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHH-----CC-------CEEEEEeCCCc---cc-hhHHHHHhhcCCceEEEccCCCHH
Confidence 35678999996 7777777777764 25 46777776521 10 00100 0 001111 212224
Q ss_pred CHHHHhcccCCcEEEeccCCCCC----------------CCHHHHHHHHccC-CCCceEEecC
Q 007703 402 NLLDAVKVIKPTILIGSSGVGRT----------------FTKEVIEAMASFN-EVKPLILALS 447 (592)
Q Consensus 402 ~L~e~V~~vkPtvLIG~S~~~g~----------------Ft~evv~~Ma~~~-e~rPIIFaLS 447 (592)
++.++++..+||++|=+.+.... .+..+++++.+.+ . +.+||.=|
T Consensus 66 ~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~-~~iv~~SS 127 (349)
T TIGR02622 66 KLRKAIAEFKPEIVFHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSV-KAVVNVTS 127 (349)
T ss_pred HHHHHHhhcCCCEEEECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCC-CEEEEEec
Confidence 67788888899999977764311 1345567776554 4 67888655
No 230
>PRK13938 phosphoheptose isomerase; Provisional
Probab=68.39 E-value=16 Score=36.55 Aligned_cols=91 Identities=16% Similarity=0.194 Sum_probs=47.9
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhh-hcCcEEEEccCCcccCCCccCCchhchhhccccCCCCCHHHHhc
Q 007703 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEE-TRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVK 408 (592)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~ee-A~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~ 408 (592)
.+.||.|+|.|..| -+|..+...|.. +++.+- +-..+-++......+.- .+ =..+...|++. +.-.+
T Consensus 44 ~g~rI~i~G~G~S~-~~A~~fa~~L~~--~~~~~r~~lg~~~l~~~~~~~~a~-~n-d~~~~~~~~~~------~~~~~- 111 (196)
T PRK13938 44 AGARVFMCGNGGSA-ADAQHFAAELTG--HLIFDRPPLGAEALHANSSHLTAV-AN-DYDYDTVFARA------LEGSA- 111 (196)
T ss_pred CCCEEEEEeCcHHH-HHHHHHHHHcCC--CccCCcCccceEEEeCChHHHHHh-hc-cccHHHHHHHH------HHhcC-
Confidence 57899999999988 677777766542 111110 00112222221111100 00 01122233321 22222
Q ss_pred ccCCcEEEeccCCCCCCCHHHHHHHHc
Q 007703 409 VIKPTILIGSSGVGRTFTKEVIEAMAS 435 (592)
Q Consensus 409 ~vkPtvLIG~S~~~g~Ft~evv~~Ma~ 435 (592)
-+-|++|+.|..|. |+++++.+..
T Consensus 112 -~~~DllI~iS~SG~--t~~vi~a~~~ 135 (196)
T PRK13938 112 -RPGDTLFAISTSGN--SMSVLRAAKT 135 (196)
T ss_pred -CCCCEEEEEcCCCC--CHHHHHHHHH
Confidence 35789999999886 9999998753
No 231
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=68.36 E-value=6.5 Score=40.30 Aligned_cols=32 Identities=28% Similarity=0.473 Sum_probs=28.4
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
||+++|+|..|.-+++.|+.. |+ ++|.++|.+
T Consensus 1 kVlvvG~GGlG~eilk~La~~-----Gv------g~i~ivD~D 32 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALM-----GF------GQIHVIDMD 32 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 689999999999999998764 76 789999987
No 232
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=68.33 E-value=8 Score=41.20 Aligned_cols=102 Identities=16% Similarity=0.202 Sum_probs=51.9
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCc--ccCCC--ccCCc-hhchhhccccCCCCCHHH
Q 007703 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL--IVSSR--KDSLQ-HFKKPWAHEHEPVNNLLD 405 (592)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GL--v~~~R--~~~l~-~~k~~fA~~~~~~~~L~e 405 (592)
..||.|+|||+-|..+|..+... | . -.+|..|..-. +.+.+ .+.+. ..+.+ ....-..++.+
T Consensus 7 ~mkI~IiGaGa~G~alA~~La~~-----g-~-----v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~--~~i~~t~d~~~ 73 (341)
T PRK12439 7 EPKVVVLGGGSWGTTVASICARR-----G-P-----TLQWVRSAETADDINDNHRNSRYLGNDVVLS--DTLRATTDFAE 73 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHHC-----C-C-----EEEEeCCHHHHHHHHhcCCCcccCCCCcccC--CCeEEECCHHH
Confidence 37899999999999999988642 4 1 23554432210 00000 00111 00000 00001145667
Q ss_pred HhcccCCcEEE-eccCCCCCCCHHHHHHHHccCCCCceEEecCCCC
Q 007703 406 AVKVIKPTILI-GSSGVGRTFTKEVIEAMASFNEVKPLILALSNPT 450 (592)
Q Consensus 406 ~V~~vkPtvLI-G~S~~~g~Ft~evv~~Ma~~~e~rPIIFaLSNPt 450 (592)
+++. +|++| .+.+ -+.+++++.++.+-...-+|..++|--
T Consensus 74 a~~~--aDlVilavps---~~~~~vl~~i~~~l~~~~~vIsl~kGi 114 (341)
T PRK12439 74 AANC--ADVVVMGVPS---HGFRGVLTELAKELRPWVPVVSLVKGL 114 (341)
T ss_pred HHhc--CCEEEEEeCH---HHHHHHHHHHHhhcCCCCEEEEEEeCC
Confidence 7654 55443 3333 357788887775432144566777744
No 233
>PRK06153 hypothetical protein; Provisional
Probab=68.31 E-value=4.5 Score=44.69 Aligned_cols=161 Identities=17% Similarity=0.279 Sum_probs=85.6
Q ss_pred hhhHHHHHHHHHHHHHhcCCCeeeeeecCCCchHHHHHHHHcCCCceec--cCCcchHHHHHHHHHHHHHHhCCCcccce
Q 007703 256 QEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFN--DDIQGTASVVLAGVVAALKLIGGTLAEHR 333 (592)
Q Consensus 256 eeY~~~idefv~av~~~fGp~~lIqfEDf~~~~Af~lL~ryr~~~~~FN--DDiQGTaaV~LAgll~Alr~~g~~l~d~r 333 (592)
..|-.+.++++.-+.---||-..|..+ .++.-|+.... +++=.+|| |=.=..+. + ++ .-.+|++.|
T Consensus 111 ~~y~~y~~k~~~Y~~ii~~~A~~~~~~--~~~~~~~~~~~-~~~~svf~y~dt~s~R~~--i----~~---~q~kL~~~~ 178 (393)
T PRK06153 111 GGYADYYHKMTTYATIISGPARVLDPT--ASARTFRVIED-AEEDSVFNYPDTASSRAG--I----GA---LSAKLEGQR 178 (393)
T ss_pred CCcccHHHHHHHHHHHhcchhhhcCCC--CCCcccCCCCC-cccCCceehhhhhccccC--h----HH---HHHHHhhCc
Confidence 467777777777666666664444433 23333332111 11122332 11111110 1 11 125788999
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhcccc--C---CCCCHHHHhc
Q 007703 334 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH--E---PVNNLLDAVK 408 (592)
Q Consensus 334 iv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~--~---~~~~L~e~V~ 408 (592)
|+|+|+|..|.-|+++|+.. |+ ++|.++|.+=+ ..+ +|...---|-.+. . ...-+.+.++
T Consensus 179 VaIVG~GG~GS~Va~~LAR~-----GV------geI~LVD~D~V-e~S---NLnRQ~gaf~~~DvGk~~~KVevaa~rl~ 243 (393)
T PRK06153 179 IAIIGLGGTGSYILDLVAKT-----PV------REIHLFDGDDF-LQH---NAFRSPGAASIEELREAPKKVDYFKSRYS 243 (393)
T ss_pred EEEEcCCccHHHHHHHHHHc-----CC------CEEEEECCCEe-ccc---ccccccccCCHhHcCCcchHHHHHHHHHH
Confidence 99999999999999999874 76 78999998722 221 2432210111110 1 1123666666
Q ss_pred ccCCcEEEeccCCCCCCCHHHHHHHHccCCCCceEE-ecCCCCC
Q 007703 409 VIKPTILIGSSGVGRTFTKEVIEAMASFNEVKPLIL-ALSNPTS 451 (592)
Q Consensus 409 ~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~e~rPIIF-aLSNPt~ 451 (592)
...|.+ ......++++-+..+. + -.+|| ++=|..+
T Consensus 244 ~in~~I----~~~~~~I~~~n~~~L~---~-~DiV~dcvDn~~a 279 (393)
T PRK06153 244 NMRRGI----VPHPEYIDEDNVDELD---G-FTFVFVCVDKGSS 279 (393)
T ss_pred HhCCeE----EEEeecCCHHHHHHhc---C-CCEEEEcCCCHHH
Confidence 667654 2334456888777654 3 44555 4444443
No 234
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=68.28 E-value=6.3 Score=42.26 Aligned_cols=68 Identities=26% Similarity=0.331 Sum_probs=43.3
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhccc----cCC-CCCHHHHh
Q 007703 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE----HEP-VNNLLDAV 407 (592)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~----~~~-~~~L~e~V 407 (592)
||+++|+|.-|.-||+.|+.+ |+ ++|.++|.+= |..+ +|..+- -|-.+ +.+ ...+.+.+
T Consensus 1 kVLIvGaGGLGs~vA~~La~a-----GV------g~ItlvD~D~-Ve~s---NL~RQ~-L~~~~D~~iGk~Ka~aaa~~L 64 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGW-----GV------RHITFVDSGK-VSYS---NPVRQS-LFTFEDCKGGKPKAEAAAERL 64 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CC------CeEEEECCCE-eccc---cCCccc-ccccchhhcCccHHHHHHHHH
Confidence 689999999999999999875 87 7999999862 2222 232211 11111 111 12566777
Q ss_pred cccCCcEEE
Q 007703 408 KVIKPTILI 416 (592)
Q Consensus 408 ~~vkPtvLI 416 (592)
+.+.|++=|
T Consensus 65 ~~iNP~v~v 73 (307)
T cd01486 65 KEIFPSIDA 73 (307)
T ss_pred HHHCCCcEE
Confidence 777777644
No 235
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=68.19 E-value=21 Score=39.27 Aligned_cols=83 Identities=17% Similarity=0.239 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHhCCCcccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchh
Q 007703 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (592)
Q Consensus 311 aaV~LAgll~Alr~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~ 389 (592)
.-+|-.|++.=|+..+.+++.+++||+|-+ ..|.-+|.||.. .| ..+.+|.|+
T Consensus 211 ~PCTp~avielL~~y~i~l~GK~vvVIGRS~iVGkPLa~LL~~-----~~-------ATVTicHs~-------------- 264 (364)
T PLN02616 211 VPCTPKGCIELLHRYNVEIKGKRAVVIGRSNIVGMPAALLLQR-----ED-------ATVSIVHSR-------------- 264 (364)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCccccHHHHHHHHH-----CC-------CeEEEeCCC--------------
Confidence 355667788888999999999999999975 578888888754 24 245566442
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007703 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (592)
Q Consensus 390 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 431 (592)
.++|.+.+++ +|++|-..|.++.++.++|+
T Consensus 265 ----------T~nl~~~~r~--ADIVIsAvGkp~~i~~d~vK 294 (364)
T PLN02616 265 ----------TKNPEEITRE--ADIIISAVGQPNMVRGSWIK 294 (364)
T ss_pred ----------CCCHHHHHhh--CCEEEEcCCCcCcCCHHHcC
Confidence 1357788886 99999999999999999997
No 236
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=67.34 E-value=7.2 Score=39.39 Aligned_cols=34 Identities=21% Similarity=0.294 Sum_probs=24.8
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCc
Q 007703 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (592)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GL 377 (592)
-+|+|+|||.||+..|..|... |+ ++.++|++.-
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~-----G~-------~v~i~E~~~~ 35 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARA-----GI-------DVTIIERRPD 35 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHT-----TC-------EEEEEESSSS
T ss_pred ceEEEECCCHHHHHHHHHHHhc-----cc-------ccccchhccc
Confidence 4799999999999999888763 65 4777887644
No 237
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=67.09 E-value=13 Score=40.05 Aligned_cols=108 Identities=19% Similarity=0.332 Sum_probs=66.4
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC-CcccCCCccCCchhchhhc-ccc--CCCCCHHHHh
Q 007703 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK-GLIVSSRKDSLQHFKKPWA-HEH--EPVNNLLDAV 407 (592)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~-GLv~~~R~~~l~~~k~~fA-~~~--~~~~~L~e~V 407 (592)
.||.++|||..|...|-+|+. .++. +.+.|+|.. +...-...| |.+-. .+. .+. ....+ .+.+
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~-----~~~~-----~el~LiDi~~~~~~G~a~D-L~~~~-~~~~~~~~i~~~~~-y~~~ 67 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLL-----QGLG-----SELVLIDINEEKAEGVALD-LSHAA-APLGSDVKITGDGD-YEDL 67 (313)
T ss_pred CeEEEECCChHHHHHHHHHhc-----cccc-----ceEEEEEcccccccchhcc-hhhcc-hhccCceEEecCCC-hhhh
Confidence 389999999999988888843 2542 479999987 221111111 32211 111 110 00022 3556
Q ss_pred cccCCcEEEec---cCCCCC-----------CCHHHHHHHHccCCCCceEEecCCCCCCCCCCHHHHhcc
Q 007703 408 KVIKPTILIGS---SGVGRT-----------FTKEVIEAMASFNEVKPLILALSNPTSQSECTAEEAYTW 463 (592)
Q Consensus 408 ~~vkPtvLIG~---S~~~g~-----------Ft~evv~~Ma~~~e~rPIIFaLSNPt~~aEct~e~A~~w 463 (592)
+. .|+.+=+ ...+|- .-+++.+++++++. ..||+-.|||. |..+|
T Consensus 68 ~~--aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~-d~ivlVvtNPv--------D~~ty 126 (313)
T COG0039 68 KG--ADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAP-DAIVLVVTNPV--------DILTY 126 (313)
T ss_pred cC--CCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCC-CeEEEEecCcH--------HHHHH
Confidence 65 7777633 334441 33578888899999 99999999999 77666
No 238
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=67.08 E-value=12 Score=42.74 Aligned_cols=38 Identities=26% Similarity=0.455 Sum_probs=27.8
Q ss_pred CCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 326 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 326 g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
+..+++.+++|+|||.+|-+|+..+.+ .| + +++++|+.
T Consensus 374 ~~~~~~k~vlIlGaGGagrAia~~L~~-----~G-----~--~V~i~nR~ 411 (529)
T PLN02520 374 GSPLAGKLFVVIGAGGAGKALAYGAKE-----KG-----A--RVVIANRT 411 (529)
T ss_pred ccCCCCCEEEEECCcHHHHHHHHHHHH-----CC-----C--EEEEEcCC
Confidence 456888999999999777666666553 35 2 68888873
No 239
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=66.87 E-value=31 Score=35.91 Aligned_cols=95 Identities=15% Similarity=0.131 Sum_probs=50.4
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhccccCCCCCHHHHhccc
Q 007703 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI 410 (592)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~v 410 (592)
..+|.|+|+|..|..+|..+... |. ..+++++|++. . .+...++.-. ......++.++++.
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~-----g~-----~~~V~~~dr~~----~---~~~~a~~~g~-~~~~~~~~~~~~~~- 66 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRL-----GL-----AGEIVGADRSA----E---TRARARELGL-GDRVTTSAAEAVKG- 66 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhc-----CC-----CcEEEEEECCH----H---HHHHHHhCCC-CceecCCHHHHhcC-
Confidence 36899999999999999887642 53 14688888742 1 1111110000 00112355566653
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHcc-CCCCceEEecCC
Q 007703 411 KPTILIGSSGVGRTFTKEVIEAMASF-NEVKPLILALSN 448 (592)
Q Consensus 411 kPtvLIG~S~~~g~Ft~evv~~Ma~~-~e~rPIIFaLSN 448 (592)
+|++| ++.+. ...+++++.+... .+ ..+|+-++.
T Consensus 67 -aDvVi-iavp~-~~~~~v~~~l~~~l~~-~~iv~dvgs 101 (307)
T PRK07502 67 -ADLVI-LCVPV-GASGAVAAEIAPHLKP-GAIVTDVGS 101 (307)
T ss_pred -CCEEE-ECCCH-HHHHHHHHHHHhhCCC-CCEEEeCcc
Confidence 67666 33322 2346666666543 23 445555443
No 240
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=66.78 E-value=17 Score=38.30 Aligned_cols=126 Identities=21% Similarity=0.325 Sum_probs=70.5
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhccccC-CCCCHHHHhcccC
Q 007703 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHE-PVNNLLDAVKVIK 411 (592)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~-~~~~L~e~V~~vk 411 (592)
||.|+|+|..|..+|-.++. .|+ .+.++++|.+-=...+...++.+. .+|-.... ...+. +.++.
T Consensus 2 kI~IIGaG~VG~~~a~~l~~-----~g~-----~~ev~l~D~~~~~~~g~a~dl~~~-~~~~~~~~i~~~d~-~~l~~-- 67 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLL-----RGL-----ASEIVLVDINKAKAEGEAMDLAHG-TPFVKPVRIYAGDY-ADCKG-- 67 (308)
T ss_pred EEEEECCCHHHHHHHHHHHH-----cCC-----CCEEEEEECCchhhhhHHHHHHcc-ccccCCeEEeeCCH-HHhCC--
Confidence 79999999999999987764 264 367999997410000000002111 11111100 01344 45665
Q ss_pred CcEEEeccCCCCC----C----------CHHHHHHHHccCCCCceEEecCCCCCCCCCCHHHHhcccc--CcEEEecCCC
Q 007703 412 PTILIGSSGVGRT----F----------TKEVIEAMASFNEVKPLILALSNPTSQSECTAEEAYTWSK--GRAIFASGSP 475 (592)
Q Consensus 412 PtvLIG~S~~~g~----F----------t~evv~~Ma~~~e~rPIIFaLSNPt~~aEct~e~A~~wt~--G~aifAsGSP 475 (592)
.|+.|=+.+.+.. . =+++++.+.+++. .-+|+-.+||. +....-+++.++ -+-+|.+|.-
T Consensus 68 aDiViita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~-~giiiv~tNP~---d~~~~~~~~~sg~p~~~viG~gt~ 143 (308)
T cd05292 68 ADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAP-DAILLVVTNPV---DVLTYVAYKLSGLPPNRVIGSGTV 143 (308)
T ss_pred CCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEecCcH---HHHHHHHHHHHCcCHHHeecccch
Confidence 6777644443311 1 1367777788888 88999999996 444555555441 1236666654
Q ss_pred C
Q 007703 476 F 476 (592)
Q Consensus 476 F 476 (592)
-
T Consensus 144 L 144 (308)
T cd05292 144 L 144 (308)
T ss_pred h
Confidence 3
No 241
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=66.30 E-value=14 Score=41.51 Aligned_cols=94 Identities=13% Similarity=0.161 Sum_probs=61.2
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhccc--cCCCCCHHHHhccc-
Q 007703 334 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE--HEPVNNLLDAVKVI- 410 (592)
Q Consensus 334 iv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~--~~~~~~L~e~V~~v- 410 (592)
|-|+|.|..|..+|..|+.. |. ++++.|+. .. ..+..++.+... .....++.|+++..
T Consensus 2 IG~IGLG~MG~~mA~nL~~~-----G~-------~V~v~drt----~~---~~~~l~~~~~~g~~~~~~~s~~e~v~~l~ 62 (467)
T TIGR00873 2 IGVIGLAVMGSNLALNMADH-----GF-------TVSVYNRT----PE---KTDEFLAEHAKGKKIVGAYSIEEFVQSLE 62 (467)
T ss_pred EEEEeeHHHHHHHHHHHHhc-----CC-------eEEEEeCC----HH---HHHHHHhhccCCCCceecCCHHHHHhhcC
Confidence 77999999999999998653 63 57777763 11 122222221111 12235788888654
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHcc-CCCCceEEecCC
Q 007703 411 KPTILIGSSGVGRTFTKEVIEAMASF-NEVKPLILALSN 448 (592)
Q Consensus 411 kPtvLIG~S~~~g~Ft~evv~~Ma~~-~e~rPIIFaLSN 448 (592)
+|+++| ++-+++...++|++.+..+ .+ .-||.=.||
T Consensus 63 ~~dvIi-l~v~~~~~v~~Vi~~l~~~L~~-g~iIID~gn 99 (467)
T TIGR00873 63 RPRKIM-LMVKAGAPVDAVINQLLPLLEK-GDIIIDGGN 99 (467)
T ss_pred CCCEEE-EECCCcHHHHHHHHHHHhhCCC-CCEEEECCC
Confidence 588666 4444566788898888764 45 789999988
No 242
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=66.12 E-value=27 Score=37.31 Aligned_cols=83 Identities=19% Similarity=0.316 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHhCCCcccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchh
Q 007703 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (592)
Q Consensus 311 aaV~LAgll~Alr~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~ 389 (592)
.-+|-.|++.=++..|.++++++++++|.+ ..|.-+|.||.. .|. .+.+|.|+
T Consensus 138 ~PcTp~aii~lL~~~~i~l~Gk~vvVIGrS~iVGkPla~lL~~-----~~a-------tVtv~hs~-------------- 191 (297)
T PRK14186 138 RSCTPAGVMRLLRSQQIDIAGKKAVVVGRSILVGKPLALMLLA-----ANA-------TVTIAHSR-------------- 191 (297)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CCC-------EEEEeCCC--------------
Confidence 356777888888999999999999999976 578888888864 242 34555432
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007703 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (592)
Q Consensus 390 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 431 (592)
..+|.+.+++ +|++|-..|.++.|+.++|+
T Consensus 192 ----------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik 221 (297)
T PRK14186 192 ----------TQDLASITRE--ADILVAAAGRPNLIGAEMVK 221 (297)
T ss_pred ----------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1357788886 99999999999999999997
No 243
>PRK06141 ornithine cyclodeaminase; Validated
Probab=66.07 E-value=47 Score=35.14 Aligned_cols=103 Identities=17% Similarity=0.180 Sum_probs=61.5
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhcccc---CCCCCHHHH
Q 007703 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH---EPVNNLLDA 406 (592)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~---~~~~~L~e~ 406 (592)
...+++|+|+|..|..++..++.. .+. ++|+++|+. .++ ...+...+.+.. ....++.++
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~----~~~------~~V~V~~Rs----~~~---a~~~a~~~~~~g~~~~~~~~~~~a 186 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASV----RPI------KQVRVWGRD----PAK---AEALAAELRAQGFDAEVVTDLEAA 186 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhc----CCC------CEEEEEcCC----HHH---HHHHHHHHHhcCCceEEeCCHHHH
Confidence 568999999999999998866542 233 678888763 221 223333332211 123678889
Q ss_pred hcccCCcEEEeccCCC-CCCCHHHHHHHHccCCCCceEEec-CCCCCCCCCCHH
Q 007703 407 VKVIKPTILIGSSGVG-RTFTKEVIEAMASFNEVKPLILAL-SNPTSQSECTAE 458 (592)
Q Consensus 407 V~~vkPtvLIG~S~~~-g~Ft~evv~~Ma~~~e~rPIIFaL-SNPt~~aEct~e 458 (592)
++. .|++|-+++.. .+|+.+.++ + .-.|-+. |++..+-|+.++
T Consensus 187 v~~--aDIVi~aT~s~~pvl~~~~l~------~-g~~i~~ig~~~~~~~El~~~ 231 (314)
T PRK06141 187 VRQ--ADIISCATLSTEPLVRGEWLK------P-GTHLDLVGNFTPDMRECDDE 231 (314)
T ss_pred Hhc--CCEEEEeeCCCCCEecHHHcC------C-CCEEEeeCCCCcccccCCHH
Confidence 875 89988765543 235554442 2 2234333 445567788875
No 244
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=65.72 E-value=24 Score=38.55 Aligned_cols=83 Identities=17% Similarity=0.225 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHhCCCcccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchh
Q 007703 311 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 389 (592)
Q Consensus 311 aaV~LAgll~Alr~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~ 389 (592)
.-+|-.|++.=++..|.+++++++||+|-+ ..|.-+|.||.. .|. .+.+|.++ .
T Consensus 194 ~PCTp~avi~LL~~~~i~l~GK~vvVIGRS~iVGkPla~LL~~-----~~A-------TVTicHs~-------T------ 248 (345)
T PLN02897 194 VSCTPKGCVELLIRSGVEIAGKNAVVIGRSNIVGLPMSLLLQR-----HDA-------TVSTVHAF-------T------ 248 (345)
T ss_pred cCCCHHHHHHHHHHhCCCCCCCEEEEECCCccccHHHHHHHHH-----CCC-------EEEEEcCC-------C------
Confidence 456777888888999999999999999975 568888887754 242 34555442 1
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007703 390 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 431 (592)
Q Consensus 390 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 431 (592)
++|.+.+++ +|++|-..|.++.|+.++|+
T Consensus 249 -----------~nl~~~~~~--ADIvIsAvGkp~~v~~d~vk 277 (345)
T PLN02897 249 -----------KDPEQITRK--ADIVIAAAGIPNLVRGSWLK 277 (345)
T ss_pred -----------CCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 357788886 99999999999999999997
No 245
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=65.64 E-value=8.8 Score=41.20 Aligned_cols=36 Identities=17% Similarity=0.295 Sum_probs=27.7
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
+..||||+|+|.||+..|+.|.+. |. ..+|.++|..
T Consensus 2 ~~~~vvIIGgG~AG~~aA~~Lr~~-----~~-----~~~I~li~~e 37 (396)
T PRK09754 2 KEKTIIIVGGGQAAAMAAASLRQQ-----GF-----TGELHLFSDE 37 (396)
T ss_pred CcCcEEEECChHHHHHHHHHHHhh-----CC-----CCCEEEeCCC
Confidence 457899999999999999988653 42 2367777764
No 246
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=65.50 E-value=16 Score=38.28 Aligned_cols=31 Identities=32% Similarity=0.429 Sum_probs=24.9
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
||.|+|||+.|..+|..|.+. | .++.+++++
T Consensus 2 kI~IiGaGa~G~ala~~L~~~-----g-------~~V~l~~r~ 32 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSK-----K-------ISVNLWGRN 32 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHC-----C-------CeEEEEecC
Confidence 699999999999999988653 4 456777764
No 247
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=65.45 E-value=7.5 Score=41.23 Aligned_cols=32 Identities=28% Similarity=0.524 Sum_probs=28.6
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
||+++|+|.-|.-+++.|+.. |+ ++|.++|.+
T Consensus 1 kVlVVGaGGlG~eilknLal~-----Gv------g~I~IvD~D 32 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALS-----GF------RNIHVIDMD 32 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CC------CeEEEECCC
Confidence 689999999999999999874 87 699999987
No 248
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=64.00 E-value=10 Score=40.59 Aligned_cols=47 Identities=23% Similarity=0.297 Sum_probs=42.8
Q ss_pred CCcchHHHHHHHHHHHHHHhCCCcccceEEEeCc-ChHHHHHHHHHHH
Q 007703 306 DIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGA-GEAGTGIAELIAL 352 (592)
Q Consensus 306 DiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GA-GsAg~GIA~ll~~ 352 (592)
---+||-++.-+++-+....|..|++..+-|+|| |..|.+||+.|..
T Consensus 142 gns~Tayaa~r~Vl~~~~~lGidlsqatvaivGa~G~Ia~~Iar~la~ 189 (351)
T COG5322 142 GNSHTAYAACRQVLKHFAQLGIDLSQATVAIVGATGDIASAIARWLAP 189 (351)
T ss_pred CCccchHHHHHHHHHHHHHhCcCHHHCeEEEecCCchHHHHHHHHhcc
Confidence 3347999999999999999999999999999998 9999999999865
No 249
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=63.65 E-value=11 Score=33.51 Aligned_cols=81 Identities=12% Similarity=0.181 Sum_probs=46.1
Q ss_pred CcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEe
Q 007703 338 GAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIG 417 (592)
Q Consensus 338 GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG 417 (592)
|.|..|.+++++|...-.. -++ +=..++|+++++... +...........++.+.++..++|++|=
T Consensus 1 G~G~VG~~l~~~l~~~~~~-~~~------~v~~v~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~dvvVE 65 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQER-IDL------EVVGVADRSMLISKD--------WAASFPDEAFTTDLEELIDDPDIDVVVE 65 (117)
T ss_dssp --SHHHHHHHHHHHHTHHH-CEE------EEEEEEESSEEEETT--------HHHHHTHSCEESSHHHHHTHTT-SEEEE
T ss_pred CCCHHHHHHHHHHHhCccc-CCE------EEEEEEECCchhhhh--------hhhhcccccccCCHHHHhcCcCCCEEEE
Confidence 7899999999999764211 011 346677877444432 1111122233468999999888999999
Q ss_pred ccCCCCCCCHHHHHHHH
Q 007703 418 SSGVGRTFTKEVIEAMA 434 (592)
Q Consensus 418 ~S~~~g~Ft~evv~~Ma 434 (592)
+++ ....++-+.+.+.
T Consensus 66 ~t~-~~~~~~~~~~~L~ 81 (117)
T PF03447_consen 66 CTS-SEAVAEYYEKALE 81 (117)
T ss_dssp -SS-CHHHHHHHHHHHH
T ss_pred CCC-chHHHHHHHHHHH
Confidence 954 3344444444444
No 250
>PLN02688 pyrroline-5-carboxylate reductase
Probab=63.49 E-value=23 Score=35.79 Aligned_cols=94 Identities=18% Similarity=0.287 Sum_probs=54.3
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEE-ccCCcccCCCccCCchhchhhcccc-CCCCCHHHHhccc
Q 007703 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLV-DSKGLIVSSRKDSLQHFKKPWAHEH-EPVNNLLDAVKVI 410 (592)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lv-D~~GLv~~~R~~~l~~~k~~fA~~~-~~~~~L~e~V~~v 410 (592)
||.|+|.|..|..||+-|+.. |.- -..+|+++ |+. .++ . +.+...+ ....+..|+++.
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~-----g~~---~~~~i~v~~~r~----~~~---~----~~~~~~g~~~~~~~~e~~~~- 61 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVAS-----GVV---PPSRISTADDSN----PAR---R----DVFQSLGVKTAASNTEVVKS- 61 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHC-----CCC---CcceEEEEeCCC----HHH---H----HHHHHcCCEEeCChHHHHhc-
Confidence 689999999999999988653 420 02367777 542 111 1 1222111 122467788764
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHcc-CCCCceEEecCCCC
Q 007703 411 KPTILIGSSGVGRTFTKEVIEAMASF-NEVKPLILALSNPT 450 (592)
Q Consensus 411 kPtvLIG~S~~~g~Ft~evv~~Ma~~-~e~rPIIFaLSNPt 450 (592)
.|++| ++..+ ...+++++.+... .+ ..+|..+++.+
T Consensus 62 -aDvVi-l~v~~-~~~~~vl~~l~~~~~~-~~~iIs~~~g~ 98 (266)
T PLN02688 62 -SDVII-LAVKP-QVVKDVLTELRPLLSK-DKLLVSVAAGI 98 (266)
T ss_pred -CCEEE-EEECc-HHHHHHHHHHHhhcCC-CCEEEEecCCC
Confidence 66665 33333 4477888777543 34 55666665554
No 251
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=63.32 E-value=6.5 Score=41.09 Aligned_cols=32 Identities=34% Similarity=0.614 Sum_probs=27.0
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
..+-|+|||-.|.|||+..+.+ |+ ++||+|++
T Consensus 12 ~~V~ivGaG~MGSGIAQv~a~s-----g~-------~V~l~d~~ 43 (298)
T KOG2304|consen 12 KNVAIVGAGQMGSGIAQVAATS-----GL-------NVWLVDAN 43 (298)
T ss_pred cceEEEcccccchhHHHHHHhc-----CC-------ceEEecCC
Confidence 4678999999999999988764 75 79999985
No 252
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=63.20 E-value=27 Score=37.43 Aligned_cols=130 Identities=19% Similarity=0.339 Sum_probs=76.4
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCc-ccCCCccCCchhchhhccccC--CCCCH
Q 007703 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL-IVSSRKDSLQHFKKPWAHEHE--PVNNL 403 (592)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GL-v~~~R~~~l~~~k~~fA~~~~--~~~~L 403 (592)
.+.+..||.++|+|..|+.+|-.|+.- |++ +++.++|-+== +--...| |+ |-.+|-+... ..++.
T Consensus 16 ~~~~~~KItVVG~G~VGmAca~siL~k-----~La-----del~lvDv~~dklkGE~MD-Lq-H~s~f~~~~~V~~~~Dy 83 (332)
T KOG1495|consen 16 KEFKHNKITVVGVGQVGMACAISILLK-----GLA-----DELVLVDVNEDKLKGEMMD-LQ-HGSAFLSTPNVVASKDY 83 (332)
T ss_pred ccccCceEEEEccchHHHHHHHHHHHh-----hhh-----hceEEEecCcchhhhhhhh-hc-cccccccCCceEecCcc
Confidence 456678999999999999999888753 774 67889996411 1111122 43 3345544211 11222
Q ss_pred HHHhcccCCcEEEeccCCCCC--------------CCHHHHHHHHccCCCCceEEecCCCCCCCCCCHHHHhccccC---
Q 007703 404 LDAVKVIKPTILIGSSGVGRT--------------FTKEVIEAMASFNEVKPLILALSNPTSQSECTAEEAYTWSKG--- 466 (592)
Q Consensus 404 ~e~V~~vkPtvLIG~S~~~g~--------------Ft~evv~~Ma~~~e~rPIIFaLSNPt~~aEct~e~A~~wt~G--- 466 (592)
. +-+ .-++.|=+.+..+. .=+.+|.++.++.+ .-|++-.|||. |.++|---
T Consensus 84 ~-~sa--~S~lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~ySp-d~~llvvSNPV--------DilTYv~wKLS 151 (332)
T KOG1495|consen 84 S-VSA--NSKLVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKYSP-DCILLVVSNPV--------DILTYVTWKLS 151 (332)
T ss_pred c-ccC--CCcEEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCC-CeEEEEecCch--------HHHHHHHHHHc
Confidence 1 111 24455544443321 12456777788899 99999999999 77665211
Q ss_pred ----cEEEecCCCCCcce
Q 007703 467 ----RAIFASGSPFDPFE 480 (592)
Q Consensus 467 ----~aifAsGSPF~pV~ 480 (592)
.-+|.||.-.+...
T Consensus 152 gfP~nRViGsGcnLDsaR 169 (332)
T KOG1495|consen 152 GFPKNRVIGSGCNLDSAR 169 (332)
T ss_pred CCcccceeccCcCccHHH
Confidence 23556665555443
No 253
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=63.19 E-value=47 Score=35.87 Aligned_cols=137 Identities=17% Similarity=0.247 Sum_probs=84.2
Q ss_pred HHHHHHHHHhcCCCeeeeeecCCCchHHHHHHHHcCCCceecc-CCcchHHHHHHHHHHHHHHhCCCcccceEEEeCcCh
Q 007703 263 DEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFND-DIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE 341 (592)
Q Consensus 263 defv~av~~~fGp~~lIqfEDf~~~~Af~lL~ryr~~~~~FND-DiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGs 341 (592)
...+..+ .+| .++++ +-.+. +.+.+.+.+| .++||.|- |-.---.=+|+=++.-.+..|+++++.||+++|-+.
T Consensus 92 ~DTarvl-s~y-~D~iv-~R~~~-~~~~~~~a~~-~~vPVINa~~~~~HPtQaL~Dl~Ti~e~~g~~l~gl~ia~vGD~~ 166 (334)
T PRK01713 92 KDTARVL-GRM-YDAIE-YRGFK-QSIVNELAEY-AGVPVFNGLTDEFHPTQMLADVLTMIENCDKPLSEISYVYIGDAR 166 (334)
T ss_pred HHHHHHH-HHh-CCEEE-EEcCc-hHHHHHHHHh-CCCCEEECCCCCCChHHHHHHHHHHHHHcCCCcCCcEEEEECCCc
Confidence 3444433 446 55544 33343 3334444454 47899993 333445567888888777777789999999999874
Q ss_pred HHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhccc-c---CCCCCHHHHhcccCCcEEEe
Q 007703 342 AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-H---EPVNNLLDAVKVIKPTILIG 417 (592)
Q Consensus 342 Ag~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~-~---~~~~~L~e~V~~vkPtvLIG 417 (592)
- ++++-++.++.+ .|+ +|.++-.+++.-.. + +-+.-+.+++. + ....++.++++. .||+.-
T Consensus 167 ~--~v~~Sl~~~~~~-~g~-------~v~~~~P~~~~p~~--~-~~~~~~~~~~~~g~~~~~~~d~~~a~~~--aDvVyt 231 (334)
T PRK01713 167 N--NMGNSLLLIGAK-LGM-------DVRICAPKALLPEA--S-LVEMCEKFAKESGARITVTDDIDKAVKG--VDFVHT 231 (334)
T ss_pred c--CHHHHHHHHHHH-cCC-------EEEEECCchhcCCH--H-HHHHHHHHHHHcCCeEEEEcCHHHHhCC--CCEEEE
Confidence 3 478877777665 475 68888888773321 1 11112234332 1 123689999997 999986
Q ss_pred cc
Q 007703 418 SS 419 (592)
Q Consensus 418 ~S 419 (592)
.+
T Consensus 232 ~~ 233 (334)
T PRK01713 232 DV 233 (334)
T ss_pred cc
Confidence 53
No 254
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=62.88 E-value=9.9 Score=38.59 Aligned_cols=38 Identities=34% Similarity=0.527 Sum_probs=32.9
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
++|++-|++++|+|.-|.-+++.++.+ |+ .+++++|.+
T Consensus 26 ~~l~~s~vlvvG~GglG~~~~~~la~a-----Gv------g~l~i~D~d 63 (254)
T COG0476 26 QKLKDSRVLVVGAGGLGSPAAKYLALA-----GV------GKLTIVDFD 63 (254)
T ss_pred HHHhhCCEEEEecChhHHHHHHHHHHc-----CC------CeEEEEcCC
Confidence 578899999999999999999988875 76 569999986
No 255
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=62.72 E-value=9 Score=38.23 Aligned_cols=31 Identities=26% Similarity=0.371 Sum_probs=25.3
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
+++|+|||.||+..|..+.. .| .++.++|+.
T Consensus 2 dvvIIG~G~aGl~aA~~l~~-----~g-------~~v~lie~~ 32 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAAR-----AN-------LKTLIIEGM 32 (300)
T ss_pred cEEEECCCHHHHHHHHHHHH-----CC-------CCEEEEecc
Confidence 68999999999999987754 25 368899975
No 256
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=62.30 E-value=5.1 Score=42.86 Aligned_cols=22 Identities=18% Similarity=0.321 Sum_probs=19.6
Q ss_pred ceEEEeCcChHHHHHHHHHHHH
Q 007703 332 HRFLFLGAGEAGTGIAELIALE 353 (592)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~ 353 (592)
.+|+|+|||-||+..|..|.+.
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~ 22 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKK 22 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHh
Confidence 4799999999999999988764
No 257
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=62.25 E-value=29 Score=34.72 Aligned_cols=60 Identities=20% Similarity=0.400 Sum_probs=41.1
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhccccCCCCCHHHHhcccC
Q 007703 333 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 411 (592)
Q Consensus 333 riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vk 411 (592)
||+|.|| |-.|-.+++.+.+ .| .+++.+++. ..| +. ...++.++++.++
T Consensus 1 kilv~G~tG~iG~~l~~~l~~-----~g-------~~v~~~~r~------~~d-~~-----------~~~~~~~~~~~~~ 50 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSP-----EG-------RVVVALTSS------QLD-LT-----------DPEALERLLRAIR 50 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHh-----cC-------CEEEEeCCc------ccC-CC-----------CHHHHHHHHHhCC
Confidence 6889997 8888888887754 25 367777763 111 21 1235778888889
Q ss_pred CcEEEeccCCC
Q 007703 412 PTILIGSSGVG 422 (592)
Q Consensus 412 PtvLIG~S~~~ 422 (592)
||++|=+.+..
T Consensus 51 ~d~vi~~a~~~ 61 (287)
T TIGR01214 51 PDAVVNTAAYT 61 (287)
T ss_pred CCEEEECCccc
Confidence 99999887653
No 258
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=61.77 E-value=23 Score=37.73 Aligned_cols=118 Identities=17% Similarity=0.240 Sum_probs=82.4
Q ss_pred CeeeeeecCCCchHHHHHHHHc--CCCceecc--------CCcchHHHHHHHHHHHHHHhCCCcccceEEEeCcCh-HHH
Q 007703 276 KVLIQFEDFANHNAFELLAKYG--TTHLVFND--------DIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGT 344 (592)
Q Consensus 276 ~~lIqfEDf~~~~Af~lL~ryr--~~~~~FND--------DiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGs-Ag~ 344 (592)
-.+||+==...-++-.+|+.-- +++==||- ...+--.+|-+|++.-++..+.+|.+.++|++|.+. -|-
T Consensus 91 GIlVQlPLp~hld~~~il~~I~p~KDVDG~hp~N~g~L~~~~~~~~PCTp~gi~~ll~~~~i~l~Gk~~vVVGrS~iVGk 170 (283)
T COG0190 91 GILVQLPLPKHLDEQKLLQAIDPEKDVDGFHPYNLGKLAQGEPGFLPCTPAGIMTLLEEYGIDLRGKNVVVVGRSNIVGK 170 (283)
T ss_pred EEEEeCCCCCCCCHHHHHhhcCcCCCccccChhHhcchhcCCCCCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcCcH
Confidence 3567776555555666665532 22111111 133344678899999999999999999999999975 577
Q ss_pred HHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCC
Q 007703 345 GIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRT 424 (592)
Q Consensus 345 GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~ 424 (592)
-+|.+|..+ + ..+.+|+|+ .++|.+.++. +|++|-.-|.++.
T Consensus 171 Pla~lL~~~-----n-------aTVtvcHs~------------------------T~~l~~~~k~--ADIvv~AvG~p~~ 212 (283)
T COG0190 171 PLALLLLNA-----N-------ATVTVCHSR------------------------TKDLASITKN--ADIVVVAVGKPHF 212 (283)
T ss_pred HHHHHHHhC-----C-------CEEEEEcCC------------------------CCCHHHHhhh--CCEEEEecCCccc
Confidence 788887652 3 335555543 1357778886 9999999999999
Q ss_pred CCHHHHH
Q 007703 425 FTKEVIE 431 (592)
Q Consensus 425 Ft~evv~ 431 (592)
|+.++|+
T Consensus 213 i~~d~vk 219 (283)
T COG0190 213 IKADMVK 219 (283)
T ss_pred ccccccc
Confidence 9988886
No 259
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=61.48 E-value=34 Score=36.27 Aligned_cols=37 Identities=32% Similarity=0.516 Sum_probs=26.5
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHccCCC-CceEEecC-CCC
Q 007703 411 KPTILIGSSGVGRTFTKEVIEAMASFNEV-KPLILALS-NPT 450 (592)
Q Consensus 411 kPtvLIG~S~~~g~Ft~evv~~Ma~~~e~-rPIIFaLS-NPt 450 (592)
+-|++||+|..|. |+++++.+....+. -|+ ++++ ||.
T Consensus 127 ~~DvvI~IS~SG~--T~~vi~al~~Ak~~Ga~~-IaIT~~~~ 165 (296)
T PRK12570 127 ADDVVVGIAASGR--TPYVIGALEYAKQIGATT-IALSCNPD 165 (296)
T ss_pred CCCEEEEEeCCCC--CHHHHHHHHHHHHCCCeE-EEEECCCC
Confidence 5699999999887 99999998654441 244 5555 455
No 260
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=61.33 E-value=11 Score=40.43 Aligned_cols=32 Identities=25% Similarity=0.449 Sum_probs=28.5
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
||+++|+|.-|.-+++.|+.+ |+ ++|.++|.+
T Consensus 1 kVlIVGaGGlG~EiaKnLal~-----Gv------g~ItIvD~D 32 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLT-----GF------GEIHIIDLD 32 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHh-----cC------CeEEEEcCC
Confidence 689999999999999999864 76 789999986
No 261
>PRK00536 speE spermidine synthase; Provisional
Probab=61.33 E-value=11 Score=39.44 Aligned_cols=101 Identities=16% Similarity=0.168 Sum_probs=60.1
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhccccCCC-CCHHHHhccc
Q 007703 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPV-NNLLDAVKVI 410 (592)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~-~~L~e~V~~v 410 (592)
.||+|+|+|-.| +++-++.. + +++.|||-++-|++--++.++..+.-|..+.-.. .-+.+.- .-
T Consensus 74 k~VLIiGGGDGg--~~REvLkh-------~-----~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~~~~~~-~~ 138 (262)
T PRK00536 74 KEVLIVDGFDLE--LAHQLFKY-------D-----THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLD-IK 138 (262)
T ss_pred CeEEEEcCCchH--HHHHHHCc-------C-----CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeehhhhcc-CC
Confidence 899999999984 55555442 1 3899999999777543334655554443221111 1122211 13
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHccCCCCceEEecCCCCCCCCCCHHHHhccccCcEEEecCCCC
Q 007703 411 KPTILIGSSGVGRTFTKEVIEAMASFNEVKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPF 476 (592)
Q Consensus 411 kPtvLIG~S~~~g~Ft~evv~~Ma~~~e~rPIIFaLSNPt~~aEct~e~A~~wt~G~aifAsGSPF 476 (592)
+=||+|-=| .|+++-.+.+.+ +++ -+|-.+.-|||||
T Consensus 139 ~fDVIIvDs----~~~~~fy~~~~~------------------------~L~-~~Gi~v~Qs~sp~ 175 (262)
T PRK00536 139 KYDLIICLQ----EPDIHKIDGLKR------------------------MLK-EDGVFISVAKHPL 175 (262)
T ss_pred cCCEEEEcC----CCChHHHHHHHH------------------------hcC-CCcEEEECCCCcc
Confidence 578888655 377776666553 122 2677777788887
No 262
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=61.21 E-value=10 Score=40.71 Aligned_cols=35 Identities=29% Similarity=0.408 Sum_probs=26.7
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcc
Q 007703 334 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 378 (592)
Q Consensus 334 iv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv 378 (592)
|+|+|||.||..+|..+..+ ..| .++.++|++--.
T Consensus 2 viIvGaGpAGlslA~~l~~~---~~g-------~~Vllid~~~~~ 36 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADA---RPG-------LSVLLIDPKPKP 36 (374)
T ss_pred EEEECCcHHHHHHHHHHHhc---CCC-------CEEEEEcCCccc
Confidence 78999999999999988443 123 578899986443
No 263
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=61.07 E-value=12 Score=35.88 Aligned_cols=36 Identities=14% Similarity=0.188 Sum_probs=28.7
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 328 ~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
+|++.++||+|+|..|.-.+++|+.+ | .++.+++.+
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~-----g-------a~V~VIsp~ 45 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDT-----G-------AFVTVVSPE 45 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhC-----C-------CEEEEEcCc
Confidence 57899999999999999888888763 4 467777543
No 264
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=60.60 E-value=12 Score=37.26 Aligned_cols=35 Identities=17% Similarity=0.298 Sum_probs=28.5
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcc
Q 007703 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (592)
Q Consensus 328 ~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~ 374 (592)
+|++.++||+|+|..|.-.++.|..+ | .+|++++.
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~-----g-------a~V~VIs~ 41 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKY-----G-------AHIVVISP 41 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEcC
Confidence 57899999999999998888877653 4 47888864
No 265
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=59.96 E-value=26 Score=35.47 Aligned_cols=47 Identities=36% Similarity=0.461 Sum_probs=29.2
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcc
Q 007703 316 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (592)
Q Consensus 316 Agll~Alr~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~ 374 (592)
+..+.|++..+. ..+.+++|+|+|..|.-.+.+.. ..|. ++++.+|+
T Consensus 107 ~ta~~al~~~~~-~~g~~VlV~G~G~vG~~~~~~ak-----~~G~------~~Vi~~~~ 153 (280)
T TIGR03366 107 ATVMAALEAAGD-LKGRRVLVVGAGMLGLTAAAAAA-----AAGA------ARVVAADP 153 (280)
T ss_pred HHHHHHHHhccC-CCCCEEEEECCCHHHHHHHHHHH-----HcCC------CEEEEECC
Confidence 334556665544 37889999999876655444332 2364 56887764
No 266
>PLN02602 lactate dehydrogenase
Probab=59.80 E-value=28 Score=37.81 Aligned_cols=123 Identities=20% Similarity=0.324 Sum_probs=73.6
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhccccCCC---CCHHHHhc
Q 007703 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPV---NNLLDAVK 408 (592)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~---~~L~e~V~ 408 (592)
.||.|+|||..|..+|-.|+. .|+ ...|.|+|.+-=...+-.-+|.+.. +|-.. ... .+.++ ++
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~-----~~l-----~~el~LiDi~~~~~~g~a~DL~~~~-~~~~~-~~i~~~~dy~~-~~ 104 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILT-----QDL-----ADELALVDVNPDKLRGEMLDLQHAA-AFLPR-TKILASTDYAV-TA 104 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----CCC-----CCEEEEEeCCCchhhHHHHHHHhhh-hcCCC-CEEEeCCCHHH-hC
Confidence 499999999999999998764 265 3679999974110111101132221 22211 111 24444 66
Q ss_pred ccCCcEEEeccCCC---CCCCH------------HHHHHHHccCCCCceEEecCCCCCCCCCCHHHHhcccc--CcEEEe
Q 007703 409 VIKPTILIGSSGVG---RTFTK------------EVIEAMASFNEVKPLILALSNPTSQSECTAEEAYTWSK--GRAIFA 471 (592)
Q Consensus 409 ~vkPtvLIG~S~~~---g~Ft~------------evv~~Ma~~~e~rPIIFaLSNPt~~aEct~e~A~~wt~--G~aifA 471 (592)
+ .|++|=+.+.+ | -|. ++++.|.+++. .-+|+-.|||. .....-++++++ =+-+|.
T Consensus 105 d--aDiVVitAG~~~k~g-~tR~dll~~N~~I~~~i~~~I~~~~p-~~ivivvtNPv---dv~t~~~~k~sg~p~~rviG 177 (350)
T PLN02602 105 G--SDLCIVTAGARQIPG-ESRLNLLQRNVALFRKIIPELAKYSP-DTILLIVSNPV---DVLTYVAWKLSGFPANRVIG 177 (350)
T ss_pred C--CCEEEECCCCCCCcC-CCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEecCch---HHHHHHHHHHhCCCHHHEEe
Confidence 5 88888555543 3 233 67788888999 99999999997 334444555542 133666
Q ss_pred cCC
Q 007703 472 SGS 474 (592)
Q Consensus 472 sGS 474 (592)
+|.
T Consensus 178 ~gt 180 (350)
T PLN02602 178 SGT 180 (350)
T ss_pred ecc
Confidence 663
No 267
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=59.36 E-value=12 Score=40.08 Aligned_cols=33 Identities=21% Similarity=0.314 Sum_probs=27.5
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCC
Q 007703 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (592)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 376 (592)
.+|+|+|||-+|+.+|-.|.+. | .++.++|++-
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~-----g-------~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQR-----G-------YQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeCCC
Confidence 4899999999999999988752 5 4688999864
No 268
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=59.11 E-value=7 Score=34.21 Aligned_cols=83 Identities=12% Similarity=0.157 Sum_probs=47.8
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCC
Q 007703 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKP 412 (592)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkP 412 (592)
||.|+|+|..|......+... ..+. +=..++|++. +......+.|-- +...++.|+++.-++
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~---~~~~------~v~~v~d~~~-------~~~~~~~~~~~~--~~~~~~~~ll~~~~~ 63 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRS---SPDF------EVVAVCDPDP-------ERAEAFAEKYGI--PVYTDLEELLADEDV 63 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHT---TTTE------EEEEEECSSH-------HHHHHHHHHTTS--EEESSHHHHHHHTTE
T ss_pred EEEEECCcHHHHHHHHHHHhc---CCCc------EEEEEEeCCH-------HHHHHHHHHhcc--cchhHHHHHHHhhcC
Confidence 799999999977665544432 0111 2244666531 112222222221 244789999998889
Q ss_pred cEEEeccCCCCCCCHHHHHHHHc
Q 007703 413 TILIGSSGVGRTFTKEVIEAMAS 435 (592)
Q Consensus 413 tvLIG~S~~~g~Ft~evv~~Ma~ 435 (592)
|+++ +++.. ....++++...+
T Consensus 64 D~V~-I~tp~-~~h~~~~~~~l~ 84 (120)
T PF01408_consen 64 DAVI-IATPP-SSHAEIAKKALE 84 (120)
T ss_dssp SEEE-EESSG-GGHHHHHHHHHH
T ss_pred CEEE-EecCC-cchHHHHHHHHH
Confidence 9888 55544 456666665544
No 269
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=58.80 E-value=13 Score=37.10 Aligned_cols=36 Identities=17% Similarity=0.327 Sum_probs=29.6
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 328 ~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
+|+++|+||+|+|..|..-++.|+.+ | .++.+++.+
T Consensus 6 ~l~gk~vlVvGgG~va~rk~~~Ll~~-----g-------a~VtVvsp~ 41 (205)
T TIGR01470 6 NLEGRAVLVVGGGDVALRKARLLLKA-----G-------AQLRVIAEE 41 (205)
T ss_pred EcCCCeEEEECcCHHHHHHHHHHHHC-----C-------CEEEEEcCC
Confidence 47889999999999999988888763 5 468888774
No 270
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=58.69 E-value=35 Score=33.26 Aligned_cols=35 Identities=29% Similarity=0.294 Sum_probs=23.8
Q ss_pred cccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 329 LAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 329 l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
+++++++|.|+ |..|..+|+.+++ .| .++++++++
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~-----~g-------~~v~~~~r~ 37 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAK-----EG-------AKVVIADLN 37 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHH-----CC-------CeEEEEeCC
Confidence 46789999996 6666666666643 25 367887764
No 271
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=58.29 E-value=18 Score=38.38 Aligned_cols=102 Identities=17% Similarity=0.171 Sum_probs=51.8
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhcc---ccCCCCCHHHHh
Q 007703 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH---EHEPVNNLLDAV 407 (592)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~---~~~~~~~L~e~V 407 (592)
-.++.|+|+|.-|..-++.++.. .++ ++|+++|+. .. +...+...+.+ +-....++++++
T Consensus 128 ~~~l~viGaG~QA~~~~~a~~~~----~~i------~~v~v~~r~----~~---~~~~~~~~~~~~~~~v~~~~~~~~av 190 (313)
T PF02423_consen 128 ARTLGVIGAGVQARWHLRALAAV----RPI------KEVRVYSRS----PE---RAEAFAARLRDLGVPVVAVDSAEEAV 190 (313)
T ss_dssp --EEEEE--SHHHHHHHHHHHHH----S--------SEEEEE-SS----HH---HHHHHHHHHHCCCTCEEEESSHHHHH
T ss_pred CceEEEECCCHHHHHHHHHHHHh----CCc------eEEEEEccC----hh---HHHHHHHhhccccccceeccchhhhc
Confidence 36999999999888777766654 244 789988874 11 12333333333 111236899999
Q ss_pred cccCCcEEEeccCCCC---CCCHHHHHHHHccCCCCceEEecCCCC-CCCCCCHH
Q 007703 408 KVIKPTILIGSSGVGR---TFTKEVIEAMASFNEVKPLILALSNPT-SQSECTAE 458 (592)
Q Consensus 408 ~~vkPtvLIG~S~~~g---~Ft~evv~~Ma~~~e~rPIIFaLSNPt-~~aEct~e 458 (592)
+. .|+++-++.... +|..+.++ + .-.|-++.--+ .+.|+.++
T Consensus 191 ~~--aDii~taT~s~~~~P~~~~~~l~------~-g~hi~~iGs~~~~~~El~~~ 236 (313)
T PF02423_consen 191 RG--ADIIVTATPSTTPAPVFDAEWLK------P-GTHINAIGSYTPGMRELDDE 236 (313)
T ss_dssp TT--SSEEEE----SSEEESB-GGGS-------T-T-EEEE-S-SSTTBESB-HH
T ss_pred cc--CCEEEEccCCCCCCccccHHHcC------C-CcEEEEecCCCCchhhcCHH
Confidence 97 899997755442 56666654 2 34455554321 23566654
No 272
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=58.09 E-value=25 Score=39.11 Aligned_cols=85 Identities=12% Similarity=0.133 Sum_probs=47.0
Q ss_pred HHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCcc--CCchhchh--hc
Q 007703 319 VAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD--SLQHFKKP--WA 394 (592)
Q Consensus 319 l~Alr~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~--~l~~~k~~--fA 394 (592)
..++......|.+.|+++++.+.-..++++++.+ .|+. +..+.+. .....+ .+...... ..
T Consensus 314 ~~~l~~~~~~L~Gkrv~i~~g~~~~~~l~~~l~e-----lGme-------vv~~~t~---~~~~~d~~~l~~~~~~~~~v 378 (456)
T TIGR01283 314 RPALEPYRERLKGKKAAIYTGGVKSWSLVSALQD-----LGME-------VVATGTQ---KGTEEDYARIRELMGEGTVM 378 (456)
T ss_pred HHHHHHHHHHcCCCEEEEEcCCchHHHHHHHHHH-----CCCE-------EEEEeee---cCCHHHHHHHHHHcCCCeEE
Confidence 4444445567889999999888888999997654 4872 2222111 111100 01111000 00
Q ss_pred cccCCCCCHHHHhcccCCcEEEec
Q 007703 395 HEHEPVNNLLDAVKVIKPTILIGS 418 (592)
Q Consensus 395 ~~~~~~~~L~e~V~~vkPtvLIG~ 418 (592)
.+..+...+.+.++..+||++||-
T Consensus 379 ~~~~d~~e~~~~i~~~~pDl~ig~ 402 (456)
T TIGR01283 379 LDDANPRELLKLLLEYKADLLIAG 402 (456)
T ss_pred EeCCCHHHHHHHHhhcCCCEEEEc
Confidence 011122457888899999999984
No 273
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=57.74 E-value=20 Score=38.90 Aligned_cols=100 Identities=18% Similarity=0.268 Sum_probs=54.1
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCc--ccCCCcc--CCchhchhhccccCCCCCHHHHh
Q 007703 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL--IVSSRKD--SLQHFKKPWAHEHEPVNNLLDAV 407 (592)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GL--v~~~R~~--~l~~~k~~fA~~~~~~~~L~e~V 407 (592)
.+|.|+|||+=|+.+|..+.+. |- .=++|..|.+=. |-.+|.+ .|+.. .+-..-.-..+|.+++
T Consensus 2 ~kI~ViGaGswGTALA~~la~n-----g~-----~V~lw~r~~~~~~~i~~~~~N~~yLp~i--~lp~~l~at~Dl~~a~ 69 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARN-----GH-----EVRLWGRDEEIVAEINETRENPKYLPGI--LLPPNLKATTDLAEAL 69 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhc-----CC-----eeEEEecCHHHHHHHHhcCcCccccCCc--cCCcccccccCHHHHH
Confidence 5899999999999999998763 41 235777664310 1122211 11110 0100011125788888
Q ss_pred cccCCcEEEeccCCCCCCCHHHHHHHHccCCCCceEEecC
Q 007703 408 KVIKPTILIGSSGVGRTFTKEVIEAMASFNEVKPLILALS 447 (592)
Q Consensus 408 ~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~e~rPIIFaLS 447 (592)
+. -=-+|++++++ |.+++++.|..+...+.+|.-+|
T Consensus 70 ~~-ad~iv~avPs~---~~r~v~~~l~~~l~~~~~iv~~s 105 (329)
T COG0240 70 DG-ADIIVIAVPSQ---ALREVLRQLKPLLLKDAIIVSAT 105 (329)
T ss_pred hc-CCEEEEECChH---HHHHHHHHHhhhccCCCeEEEEe
Confidence 75 13345566663 47788888753322144444443
No 274
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=57.63 E-value=29 Score=36.26 Aligned_cols=103 Identities=12% Similarity=0.075 Sum_probs=55.1
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCch----hchhhccccCCCCCHH
Q 007703 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH----FKKPWAHEHEPVNNLL 404 (592)
Q Consensus 329 l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~----~k~~fA~~~~~~~~L~ 404 (592)
-...||.|+|+|+-|..+|-.|.++ | .++.++++... ..-+...+.- ....+. ...-..+.
T Consensus 3 ~~~m~I~IiG~GaiG~~lA~~L~~~-----g-------~~V~~~~r~~~-~~~~~~g~~~~~~~~~~~~~-~~~~~~~~- 67 (313)
T PRK06249 3 SETPRIGIIGTGAIGGFYGAMLARA-----G-------FDVHFLLRSDY-EAVRENGLQVDSVHGDFHLP-PVQAYRSA- 67 (313)
T ss_pred CcCcEEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEEeCCH-HHHHhCCeEEEeCCCCeeec-CceEEcch-
Confidence 3456899999999999999888653 4 34555555321 1111111100 000000 00001122
Q ss_pred HHhcccCCcEEEeccCCCCCCCHHHHHHHHccC-CCCceEEecCCCCC
Q 007703 405 DAVKVIKPTILIGSSGVGRTFTKEVIEAMASFN-EVKPLILALSNPTS 451 (592)
Q Consensus 405 e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~-e~rPIIFaLSNPt~ 451 (592)
+.+. .+|++| ++... .-++++++.+.... . ..+|+.|-|=-.
T Consensus 68 ~~~~--~~D~vi-lavK~-~~~~~~~~~l~~~~~~-~~~iv~lqNG~~ 110 (313)
T PRK06249 68 EDMP--PCDWVL-VGLKT-TANALLAPLIPQVAAP-DAKVLLLQNGLG 110 (313)
T ss_pred hhcC--CCCEEE-EEecC-CChHhHHHHHhhhcCC-CCEEEEecCCCC
Confidence 2233 367776 44432 34788898887643 4 678888998764
No 275
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=57.53 E-value=12 Score=40.49 Aligned_cols=31 Identities=32% Similarity=0.496 Sum_probs=24.0
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
+|+|+|||.||...|..+.. .|+ ++.++|++
T Consensus 2 ~VvIVGaGPAG~~aA~~la~-----~G~-------~V~llE~~ 32 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLAS-----AGI-------QTFLLERK 32 (398)
T ss_pred eEEEECCcHHHHHHHHHHHh-----CCC-------cEEEEecC
Confidence 68999999999999988764 364 46666664
No 276
>PRK07877 hypothetical protein; Provisional
Probab=57.46 E-value=25 Score=41.81 Aligned_cols=101 Identities=21% Similarity=0.193 Sum_probs=63.2
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCch----------hchhhccc
Q 007703 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH----------FKKPWAHE 396 (592)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~----------~k~~fA~~ 396 (592)
.+|++.||+|+|+| .|.-+|..|+.+ |+ ..+|.++|.+=+ ..+ +|+- .|..-|+.
T Consensus 103 ~~L~~~~V~IvG~G-lGs~~a~~Lara-----Gv-----vG~l~lvD~D~v-e~s---NLnRq~~~~~diG~~Kv~~a~~ 167 (722)
T PRK07877 103 ERLGRLRIGVVGLS-VGHAIAHTLAAE-----GL-----CGELRLADFDTL-ELS---NLNRVPAGVFDLGVNKAVVAAR 167 (722)
T ss_pred HHHhcCCEEEEEec-HHHHHHHHHHHc-----cC-----CCeEEEEcCCEE-ccc---ccccccCChhhcccHHHHHHHH
Confidence 56889999999998 888899888764 63 268999998733 211 2333 22221211
Q ss_pred -----cCC---------C--CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHccCCCCceEEecC
Q 007703 397 -----HEP---------V--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVKPLILALS 447 (592)
Q Consensus 397 -----~~~---------~--~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~e~rPIIFaLS 447 (592)
.+. . .++.+.++. .|++|-++-- .=++-.|...+.... .|+|++.+
T Consensus 168 ~l~~inp~i~v~~~~~~i~~~n~~~~l~~--~DlVvD~~D~--~~~R~~ln~~a~~~~-iP~i~~~~ 229 (722)
T PRK07877 168 RIAELDPYLPVEVFTDGLTEDNVDAFLDG--LDVVVEECDS--LDVKVLLREAARARR-IPVLMATS 229 (722)
T ss_pred HHHHHCCCCEEEEEeccCCHHHHHHHhcC--CCEEEECCCC--HHHHHHHHHHHHHcC-CCEEEEcC
Confidence 011 1 245555654 7777766652 236666777776677 88888775
No 277
>PRK07334 threonine dehydratase; Provisional
Probab=57.46 E-value=1.5e+02 Score=32.52 Aligned_cols=36 Identities=19% Similarity=0.169 Sum_probs=21.2
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCC
Q 007703 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (592)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 376 (592)
|.-|+-+|.|.--.||+.-+... + -.-+||.|+..|
T Consensus 173 d~vv~~vG~GG~~~Gi~~~lk~~-----~-----~~~~vi~ve~~~ 208 (403)
T PRK07334 173 DTLVVPIGGGGLISGMATAAKAL-----K-----PDIEIIGVQTEL 208 (403)
T ss_pred CEEEEecCHHHHHHHHHHHHHHh-----C-----CCCEEEEEEECC
Confidence 44444444444447888766432 1 124899999975
No 278
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=57.38 E-value=45 Score=36.20 Aligned_cols=33 Identities=15% Similarity=0.395 Sum_probs=26.6
Q ss_pred cceEEEeC-cChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 331 EHRFLFLG-AGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 331 d~riv~~G-AGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
..+|.|+| +|..|..+|..+..+ |. .++++|++
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~-----G~-------~V~~~d~~ 131 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLS-----GY-------QVRILEQD 131 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHC-----CC-------eEEEeCCC
Confidence 37899999 999999999988653 53 58888874
No 279
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=57.34 E-value=6.7 Score=41.15 Aligned_cols=36 Identities=11% Similarity=0.282 Sum_probs=26.6
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCc
Q 007703 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (592)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GL 377 (592)
+|||+|+|.||+-.|+.+.... . ...+|.++|++.-
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~----~-----~~~~I~li~~~~~ 36 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKP----L-----PGVRVTLINPSST 36 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcC----C-----CCCEEEEECCCCC
Confidence 5899999999998888775321 0 1357999997654
No 280
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=56.97 E-value=41 Score=34.74 Aligned_cols=98 Identities=12% Similarity=0.106 Sum_probs=53.3
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcC-CChhhhcCcEEEEccCCcccCCCccCCchhchhhccccCCCCCHHHHhccc
Q 007703 332 HRFLFLGAGEAGTGIAELIALEISKQTK-APVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI 410 (592)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G-~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~v 410 (592)
+||.|+|+|..|..+|..+... | ++ ..+++++|++.- +.+......+. ......+..++++.
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~-----g~~~----~~~V~~~~r~~~------~~~~~l~~~~~-~~~~~~~~~e~~~~- 64 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLET-----EVAT----PEEIILYSSSKN------EHFNQLYDKYP-TVELADNEAEIFTK- 64 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHC-----CCCC----cccEEEEeCCcH------HHHHHHHHHcC-CeEEeCCHHHHHhh-
Confidence 4799999999999999987652 4 21 246777776310 11111111110 00112456666654
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHccC-CCCceEEecCCCC
Q 007703 411 KPTILIGSSGVGRTFTKEVIEAMASFN-EVKPLILALSNPT 450 (592)
Q Consensus 411 kPtvLIG~S~~~g~Ft~evv~~Ma~~~-e~rPIIFaLSNPt 450 (592)
+|++| ++..+ ...+++++.+..+- . ..+|..++|-.
T Consensus 65 -aDvVi-lavpp-~~~~~vl~~l~~~l~~-~~~ivS~~aGi 101 (277)
T PRK06928 65 -CDHSF-ICVPP-LAVLPLLKDCAPVLTP-DRHVVSIAAGV 101 (277)
T ss_pred -CCEEE-EecCH-HHHHHHHHHHHhhcCC-CCEEEEECCCC
Confidence 67666 44433 34556776665432 3 44555566654
No 281
>PF06690 DUF1188: Protein of unknown function (DUF1188); InterPro: IPR009573 This family consists of several hypothetical archaeal proteins of around 260 residues in length, which seem to be specific to Methanobacterium, Methanococcus and Methanopyrus species. The function of this family is unknown.
Probab=56.84 E-value=20 Score=37.48 Aligned_cols=144 Identities=18% Similarity=0.268 Sum_probs=84.1
Q ss_pred hCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhccccCCCC-CH
Q 007703 325 IGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVN-NL 403 (592)
Q Consensus 325 ~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~-~L 403 (592)
-|..++ +++|+||=--|.+||+.|... .+|+++|.+ ||-+.+-.+.-... .+
T Consensus 38 e~~~~k--~~lI~G~YltG~~iA~~L~~~-------------~eV~lvDI~------------p~lk~ll~~~i~F~~~~ 90 (252)
T PF06690_consen 38 EGEEFK--QALIFGAYLTGNFIASALSKK-------------CEVTLVDIH------------PHLKELLNENIKFMEFR 90 (252)
T ss_pred cccccc--eEEEEEEEeehHHHHHHhccC-------------ceEEEEeCc------------HHHHHHhcCCCceeecc
Confidence 345555 899999999999999877432 279999874 33333332111111 11
Q ss_pred HHHhcccCCcEEEeccCCCCCCCHHHHHHHHccCCCCceEEecCCCCCCCCCCHHHHhccccCcEEEecCCCCCcceeCC
Q 007703 404 LDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNG 483 (592)
Q Consensus 404 ~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~e~rPIIFaLSNPt~~aEct~e~A~~wt~G~aifAsGSPF~pV~~~G 483 (592)
.+ + .++||++|=++|-||+ +++.++.. .|=+|=.=||. ++-.=...++..+
T Consensus 91 ~~-~-~~~~DlIID~TGlGGv-~~~~Ls~~------~p~v~IVEdP~--~~~sD~~I~~~~n------------------ 141 (252)
T PF06690_consen 91 NG-L-EGNPDLIIDTTGLGGV-DPDFLSKF------NPKVFIVEDPK--GDGSDKTIYEINN------------------ 141 (252)
T ss_pred CC-C-CCCCCEEEECCCCCCC-CHHHHhcc------CCCEEEEECCC--ccCcchhhhhccc------------------
Confidence 11 1 2479999999999997 99988865 45577778888 4443333333211
Q ss_pred eeeCcc--CCcccccchhh--hHHHHHhCCcccCHHHHHHHHHHH
Q 007703 484 KVFVPG--QANNAYIFPGF--GLGLVISGAIRVHDDMLLAASEAL 524 (592)
Q Consensus 484 ~~~~p~--Q~NN~yiFPGi--glG~~~s~a~~Itd~m~~aAA~aL 524 (592)
..-.+. -+.+..+.=-. |+.+=.||--.+|=+.+..|+..+
T Consensus 142 t~erl~~~~~~~kg~LkT~r~~~~sKTSGTMTLTIdt~r~s~~~i 186 (252)
T PF06690_consen 142 TEERLNAINGEKKGILKTYRSGLVSKTSGTMTLTIDTLRDSMNEI 186 (252)
T ss_pred HHHHHhhhcccceeEEEEeeccccccccceEEEEHHHHHHHHHHH
Confidence 111111 11222332223 455556777777777777666554
No 282
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=56.51 E-value=13 Score=39.68 Aligned_cols=31 Identities=23% Similarity=0.377 Sum_probs=23.7
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
.|+|+|||.||...|..+.+ .|+ ++.++|++
T Consensus 2 DVvIVGaGpAG~~aA~~La~-----~G~-------~V~l~E~~ 32 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLAR-----AGI-------ETILLERA 32 (388)
T ss_pred eEEEECCCHHHHHHHHHHHh-----CCC-------cEEEEECC
Confidence 48999999999999988764 254 46666665
No 283
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=56.37 E-value=20 Score=40.60 Aligned_cols=36 Identities=17% Similarity=0.248 Sum_probs=27.8
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 328 ~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
+-.+.+|+|+|||.||+..|..+.. .|. ++.++|+.
T Consensus 134 ~~~g~~V~VIGaGpaGL~aA~~l~~-----~G~-------~V~v~e~~ 169 (564)
T PRK12771 134 PDTGKRVAVIGGGPAGLSAAYHLRR-----MGH-------AVTIFEAG 169 (564)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEecC
Confidence 3467899999999999999887754 363 47788853
No 284
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=56.27 E-value=21 Score=38.53 Aligned_cols=20 Identities=40% Similarity=0.664 Sum_probs=18.3
Q ss_pred eEEEeCcChHHHHHHHHHHH
Q 007703 333 RFLFLGAGEAGTGIAELIAL 352 (592)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~ 352 (592)
||.|+|||+-|+.+|..+..
T Consensus 1 kI~VIGaG~wGtALA~~la~ 20 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAE 20 (342)
T ss_pred CEEEECcCHHHHHHHHHHHH
Confidence 68999999999999999865
No 285
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=56.25 E-value=20 Score=36.99 Aligned_cols=38 Identities=26% Similarity=0.298 Sum_probs=28.0
Q ss_pred cCCcEEEeccCCCCCCCHHHHHHHHc--cCCCCceEEecCCCC
Q 007703 410 IKPTILIGSSGVGRTFTKEVIEAMAS--FNEVKPLILALSNPT 450 (592)
Q Consensus 410 vkPtvLIG~S~~~g~Ft~evv~~Ma~--~~e~rPIIFaLSNPt 450 (592)
-+-|++||.|..|. |+++++.+.. ... -|+|.=-+||.
T Consensus 117 ~~~DvvI~IS~SG~--T~~vi~al~~Ak~~G-a~~I~It~~~~ 156 (257)
T cd05007 117 TERDVVIGIAASGR--TPYVLGALRYARARG-ALTIGIACNPG 156 (257)
T ss_pred CCCCEEEEEeCCCC--CHHHHHHHHHHHHCC-CeEEEEECCCC
Confidence 36799999999887 9999998853 333 46666556666
No 286
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=55.99 E-value=10 Score=39.82 Aligned_cols=42 Identities=24% Similarity=0.378 Sum_probs=33.7
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccC
Q 007703 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVS 380 (592)
Q Consensus 328 ~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~ 380 (592)
+|++++|+++|.|-.|-=+++.|+. .|+ .+|.++|-+-+=.+
T Consensus 27 kl~~~~V~VvGiGGVGSw~veALaR-----sGi------g~itlID~D~v~vT 68 (263)
T COG1179 27 KLKQAHVCVVGIGGVGSWAVEALAR-----SGI------GRITLIDMDDVCVT 68 (263)
T ss_pred HHhhCcEEEEecCchhHHHHHHHHH-----cCC------CeEEEEeccccccc
Confidence 5889999999999888777776665 487 89999999866443
No 287
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=55.76 E-value=17 Score=40.03 Aligned_cols=29 Identities=17% Similarity=0.174 Sum_probs=24.2
Q ss_pred HhCCCcccceEEEeCcChHHHHHHHHHHH
Q 007703 324 LIGGTLAEHRFLFLGAGEAGTGIAELIAL 352 (592)
Q Consensus 324 ~~g~~l~d~riv~~GAGsAg~GIA~ll~~ 352 (592)
..|..++.++++|+|+|.+|+.+|+.+.+
T Consensus 9 ~~~~~~~~~~v~viG~G~~G~~~A~~L~~ 37 (480)
T PRK01438 9 SWHSDWQGLRVVVAGLGVSGFAAADALLE 37 (480)
T ss_pred hcccCcCCCEEEEECCCHHHHHHHHHHHH
Confidence 34566788899999999999999988764
No 288
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=55.74 E-value=19 Score=40.69 Aligned_cols=104 Identities=17% Similarity=0.303 Sum_probs=65.6
Q ss_pred CCCCccccchhhHHHHHHhcCCCCCceeeEEe-ecCCCchhcccCcccccccccCCChhhhHHHHHHHHHHHHHhcCCCe
Q 007703 199 LGCQGMGIPVGKLALYTALGGIRPSACLPITV-DVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKV 277 (592)
Q Consensus 199 lG~~GmgI~iGKl~LYta~gGI~P~~~LPI~L-DvGTnNe~LL~Dp~YlG~r~~R~~geeY~~~idefv~av~~~fGp~~ 277 (592)
.|+-|. ||.++-.|.|+-=--...-+.| .|+.| .+ +...+ ...= ++.
T Consensus 241 YGPPGT----GKSS~IaAmAn~L~ydIydLeLt~v~~n-~d-----------------------Lr~LL---~~t~-~kS 288 (457)
T KOG0743|consen 241 YGPPGT----GKSSFIAAMANYLNYDIYDLELTEVKLD-SD-----------------------LRHLL---LATP-NKS 288 (457)
T ss_pred eCCCCC----CHHHHHHHHHhhcCCceEEeeeccccCc-HH-----------------------HHHHH---HhCC-CCc
Confidence 466663 7999999999865333555666 66643 22 23333 3333 788
Q ss_pred eeeeecCCCchHHHHHHHHcCCCceeccCCcchHHHHHHHHHHHHHHhCCCcccceEEEeCc
Q 007703 278 LIQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGA 339 (592)
Q Consensus 278 lIqfEDf~~~~Af~lL~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GA 339 (592)
+|-.|||.. +|.+=++-.++-.-|.+ .-.-|+|.||||++--.-..=.|.||+|+=.
T Consensus 289 IivIEDIDc--s~~l~~~~~~~~~~~~~---~~~~VTlSGLLNfiDGlwSscg~ERIivFTT 345 (457)
T KOG0743|consen 289 ILLIEDIDC--SFDLRERRKKKKENFEG---DLSRVTLSGLLNFLDGLWSSCGDERIIVFTT 345 (457)
T ss_pred EEEEeeccc--ccccccccccccccccC---CcceeehHHhhhhhccccccCCCceEEEEec
Confidence 999999964 45554443333333333 4667999999999765555555778888754
No 289
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=55.72 E-value=47 Score=34.93 Aligned_cols=105 Identities=16% Similarity=0.209 Sum_probs=62.1
Q ss_pred hCCCcccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchh----------chhh
Q 007703 325 IGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF----------KKPW 393 (592)
Q Consensus 325 ~g~~l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~----------k~~f 393 (592)
++-.++..||+|.|| |-.|.-+++.|+.. | .+++.+|+. .......+... +..|
T Consensus 9 ~~~~~~~~~vlVtGatGfiG~~lv~~L~~~-----g-------~~V~~~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (348)
T PRK15181 9 TKLVLAPKRWLITGVAGFIGSGLLEELLFL-----N-------QTVIGLDNF---STGYQHNLDDVRTSVSEEQWSRFIF 73 (348)
T ss_pred hcccccCCEEEEECCccHHHHHHHHHHHHC-----C-------CEEEEEeCC---CCcchhhhhhhhhccccccCCceEE
Confidence 344567789999997 99998888887652 4 357777753 11110111111 0111
Q ss_pred cc-ccCCCCCHHHHhcccCCcEEEeccCCCCC----------------CCHHHHHHHHccCCCCceEEecC
Q 007703 394 AH-EHEPVNNLLDAVKVIKPTILIGSSGVGRT----------------FTKEVIEAMASFNEVKPLILALS 447 (592)
Q Consensus 394 A~-~~~~~~~L~e~V~~vkPtvLIG~S~~~g~----------------Ft~evv~~Ma~~~e~rPIIFaLS 447 (592)
-. +-.+...|.++++. ||++|=+.+.... .|..+++++.+..- +.+||+=|
T Consensus 74 ~~~Di~d~~~l~~~~~~--~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~-~~~v~~SS 141 (348)
T PRK15181 74 IQGDIRKFTDCQKACKN--VDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHV-SSFTYAAS 141 (348)
T ss_pred EEccCCCHHHHHHHhhC--CCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCC-CeEEEeec
Confidence 11 11122356677774 9999988775432 24578888877655 78998754
No 290
>PRK07340 ornithine cyclodeaminase; Validated
Probab=55.64 E-value=58 Score=34.36 Aligned_cols=103 Identities=9% Similarity=0.094 Sum_probs=59.2
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhccccCC--CCCHHHH
Q 007703 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEP--VNNLLDA 406 (592)
Q Consensus 329 l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~--~~~L~e~ 406 (592)
....+++|+|+|..|...++.++.. .+. ++|+++|+. ..+ ...+...+.....+ ..++.|+
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~----~~~------~~v~v~~r~----~~~---a~~~a~~~~~~~~~~~~~~~~~a 185 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAG----LPV------RRVWVRGRT----AAS---AAAFCAHARALGPTAEPLDGEAI 185 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHh----CCC------CEEEEEcCC----HHH---HHHHHHHHHhcCCeeEECCHHHH
Confidence 3568999999999998888877653 243 578888874 221 22222222211111 3578889
Q ss_pred hcccCCcEEEeccCCC-CCCCHHHHHHHHccCCCCceEEecCCC-CCCCCCCHH
Q 007703 407 VKVIKPTILIGSSGVG-RTFTKEVIEAMASFNEVKPLILALSNP-TSQSECTAE 458 (592)
Q Consensus 407 V~~vkPtvLIG~S~~~-g~Ft~evv~~Ma~~~e~rPIIFaLSNP-t~~aEct~e 458 (592)
++. .|++|-++... .+|..+ ++ + .--|-++.-. ..+.|+.+|
T Consensus 186 v~~--aDiVitaT~s~~Pl~~~~-~~------~-g~hi~~iGs~~p~~~El~~~ 229 (304)
T PRK07340 186 PEA--VDLVVTATTSRTPVYPEA-AR------A-GRLVVAVGAFTPDMAELAPR 229 (304)
T ss_pred hhc--CCEEEEccCCCCceeCcc-CC------C-CCEEEecCCCCCCcccCCHH
Confidence 974 99999776543 244432 21 2 3345555432 135677665
No 291
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=55.52 E-value=25 Score=37.12 Aligned_cols=123 Identities=17% Similarity=0.201 Sum_probs=70.6
Q ss_pred EeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEE
Q 007703 336 FLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTIL 415 (592)
Q Consensus 336 ~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvL 415 (592)
|+|||..|..+|-+|+. .|+ ...|.|+|.+-=..++-.-+|.+-.-.+.++..-..+-.+.+++ .|++
T Consensus 1 iIGaG~VG~~~a~~l~~-----~~l-----~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~d--aDiv 68 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLN-----QGI-----ADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKD--ADLV 68 (299)
T ss_pred CCCcCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCC--CCEE
Confidence 58999999999998864 265 26899999842111111111322221111110001122466776 8998
Q ss_pred EeccCCC---CC-----------CCHHHHHHHHccCCCCceEEecCCCCCCCCCCHHHHhccccC--cEEEecCC
Q 007703 416 IGSSGVG---RT-----------FTKEVIEAMASFNEVKPLILALSNPTSQSECTAEEAYTWSKG--RAIFASGS 474 (592)
Q Consensus 416 IG~S~~~---g~-----------Ft~evv~~Ma~~~e~rPIIFaLSNPt~~aEct~e~A~~wt~G--~aifAsGS 474 (592)
|=+.+.+ |- .=+++.+.+.+++. .-+|+-.|||.. ....-++++++= +-+|.+|.
T Consensus 69 Vitag~~rk~g~~R~dll~~N~~i~~~~~~~i~~~~p-~~~vivvsNP~d---~~t~~~~~~sg~p~~~viG~gt 139 (299)
T TIGR01771 69 VITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSGF-DGIFLVATNPVD---ILTYVAWKLSGFPKNRVIGSGT 139 (299)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEeCCHHH---HHHHHHHHHhCCCHHHEEeccc
Confidence 8666653 21 11357778888898 999999999983 444455554421 23666653
No 292
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=55.40 E-value=15 Score=37.81 Aligned_cols=32 Identities=34% Similarity=0.528 Sum_probs=26.5
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
+||.|+|+|..|.+||..++.. | .+++++|.+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~-----G-------~~V~l~d~~ 36 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALA-----G-------YDVLLNDVS 36 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHC-----C-------CeEEEEeCC
Confidence 6899999999999999988653 5 368888864
No 293
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=55.39 E-value=15 Score=38.33 Aligned_cols=22 Identities=45% Similarity=0.679 Sum_probs=19.4
Q ss_pred ceEEEeCcChHHHHHHHHHHHH
Q 007703 332 HRFLFLGAGEAGTGIAELIALE 353 (592)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~ 353 (592)
.||.|+|||..|.|||.+++.+
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~ 27 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARA 27 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhC
Confidence 4899999999999999988753
No 294
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=55.31 E-value=12 Score=41.01 Aligned_cols=33 Identities=18% Similarity=0.297 Sum_probs=25.5
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
||||+|+|.||+..|+.|.+. +- .-+|.|+|+.
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~-----~~-----~~~I~li~~~ 35 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRL-----DK-----ESDIIIFEKD 35 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhh-----CC-----CCCEEEEECC
Confidence 899999999999999998642 11 1467777775
No 295
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=55.24 E-value=12 Score=35.20 Aligned_cols=36 Identities=17% Similarity=0.311 Sum_probs=28.0
Q ss_pred EEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCc
Q 007703 335 LFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (592)
Q Consensus 335 v~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GL 377 (592)
+|+|+|.+|+.+++.|+... .....-+|.++|.++.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~-------~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQA-------DPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhc-------CCCCCCEEEEEcCCCc
Confidence 48999999999999998863 1123468999999755
No 296
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=55.12 E-value=43 Score=35.76 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=21.6
Q ss_pred cccceEEEeCcChHHHHHHHHHHH
Q 007703 329 LAEHRFLFLGAGEAGTGIAELIAL 352 (592)
Q Consensus 329 l~d~riv~~GAGsAg~GIA~ll~~ 352 (592)
|++.+|.|+|+|.-|-++|..|..
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~ 24 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRD 24 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHH
Confidence 578899999999999999998865
No 297
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=55.05 E-value=17 Score=36.76 Aligned_cols=32 Identities=25% Similarity=0.366 Sum_probs=27.2
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCC
Q 007703 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (592)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 376 (592)
.|+|+|||-+|+.+|-.|.+ .| .++.++|+..
T Consensus 1 DvvIIGaGi~G~~~A~~La~-----~G-------~~V~l~e~~~ 32 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELAR-----RG-------HSVTLLERGD 32 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHH-----TT-------SEEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHH-----CC-------CeEEEEeecc
Confidence 38999999999999998876 36 4899999983
No 298
>PRK05866 short chain dehydrogenase; Provisional
Probab=54.51 E-value=39 Score=34.71 Aligned_cols=39 Identities=26% Similarity=0.379 Sum_probs=25.4
Q ss_pred CCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 326 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 326 g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
+..+++.+++|.||++ ||...++..+.+ .| .+++++|++
T Consensus 35 ~~~~~~k~vlItGasg---gIG~~la~~La~-~G-------~~Vi~~~R~ 73 (293)
T PRK05866 35 PVDLTGKRILLTGASS---GIGEAAAEQFAR-RG-------ATVVAVARR 73 (293)
T ss_pred CcCCCCCEEEEeCCCc---HHHHHHHHHHHH-CC-------CEEEEEECC
Confidence 4557788999999843 444455554444 36 368888875
No 299
>PRK06184 hypothetical protein; Provisional
Probab=54.43 E-value=16 Score=40.64 Aligned_cols=35 Identities=23% Similarity=0.335 Sum_probs=27.2
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCC
Q 007703 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (592)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 376 (592)
++..|+|+|||.+|+..|-+|.+ .|+ ++.++|+.-
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~-----~Gi-------~v~viE~~~ 36 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELAR-----RGV-------SFRLIEKAP 36 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHH-----CCC-------cEEEEeCCC
Confidence 45789999999999999988765 375 467777653
No 300
>PRK07233 hypothetical protein; Provisional
Probab=53.83 E-value=14 Score=39.16 Aligned_cols=31 Identities=19% Similarity=0.369 Sum_probs=25.1
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
||+|+|||-||+..|..|.+. | .++.+++++
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~-----G-------~~v~vlE~~ 31 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKR-----G-------HEVTVFEAD 31 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHC-----C-------CcEEEEEeC
Confidence 689999999999999887652 5 367778776
No 301
>PRK06847 hypothetical protein; Provisional
Probab=53.40 E-value=17 Score=37.94 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=19.1
Q ss_pred cceEEEeCcChHHHHHHHHHHH
Q 007703 331 EHRFLFLGAGEAGTGIAELIAL 352 (592)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~ 352 (592)
..+|+|+|||.||+..|..|..
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~ 25 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRR 25 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHh
Confidence 4589999999999999988764
No 302
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=53.21 E-value=19 Score=39.73 Aligned_cols=36 Identities=19% Similarity=0.331 Sum_probs=28.9
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 328 ~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
+.+..+|+|+|+|.||+..|..+.. .| .++.++|+.
T Consensus 130 ~~~~~~V~IIG~G~aGl~aA~~l~~-----~G-------~~V~vie~~ 165 (449)
T TIGR01316 130 PSTHKKVAVIGAGPAGLACASELAK-----AG-------HSVTVFEAL 165 (449)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHH-----CC-------CcEEEEecC
Confidence 4567899999999999999988864 25 468888874
No 303
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=53.13 E-value=18 Score=40.21 Aligned_cols=36 Identities=17% Similarity=0.394 Sum_probs=28.6
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCC
Q 007703 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (592)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 376 (592)
+.-+++|+|||.+|+++|.-|.++ |++ ++.++|+..
T Consensus 7 ~~~~v~IIGaG~sGlaaa~~L~~~-----g~~------~~~i~Ek~~ 42 (443)
T COG2072 7 THTDVAIIGAGQSGLAAAYALKQA-----GVP------DFVIFEKRD 42 (443)
T ss_pred CcccEEEECCCHHHHHHHHHHHHc-----CCC------cEEEEEccC
Confidence 346899999999999999988764 763 377888764
No 304
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=52.87 E-value=20 Score=38.85 Aligned_cols=36 Identities=14% Similarity=0.252 Sum_probs=27.6
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCc
Q 007703 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (592)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GL 377 (592)
.||||+|+|.||+..|..|.+. |- .-+|.|+|++.-
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~-----~~-----~~~Vtli~~~~~ 36 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRL-----NK-----ELEITVYEKTDI 36 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHH-----CC-----CCcEEEEECCCc
Confidence 3899999999999999987542 21 137889988754
No 305
>PRK07236 hypothetical protein; Provisional
Probab=52.79 E-value=19 Score=38.19 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=21.0
Q ss_pred cccceEEEeCcChHHHHHHHHHHH
Q 007703 329 LAEHRFLFLGAGEAGTGIAELIAL 352 (592)
Q Consensus 329 l~d~riv~~GAGsAg~GIA~ll~~ 352 (592)
....+|+|+|||.||+..|..|.+
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~ 27 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRR 27 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHh
Confidence 456799999999999999998876
No 306
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=52.75 E-value=78 Score=35.80 Aligned_cols=118 Identities=19% Similarity=0.208 Sum_probs=65.1
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhcccc--CCCCCHHH
Q 007703 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH--EPVNNLLD 405 (592)
Q Consensus 328 ~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~--~~~~~L~e 405 (592)
.+.++||+++|-|-.|+++|+.|.. .| .++++.|.+=. ......++...+. -......+
T Consensus 4 ~~~~~kv~V~GLG~sG~a~a~~L~~-----~G-------~~v~v~D~~~~-------~~~~~~~~~~~~~i~~~~g~~~~ 64 (448)
T COG0771 4 DFQGKKVLVLGLGKSGLAAARFLLK-----LG-------AEVTVSDDRPA-------PEGLAAQPLLLEGIEVELGSHDD 64 (448)
T ss_pred cccCCEEEEEecccccHHHHHHHHH-----CC-------CeEEEEcCCCC-------ccchhhhhhhccCceeecCccch
Confidence 3458999999999999999998875 36 46888886411 1111111111110 01111111
Q ss_pred HhcccCCcEEEeccCCCCCCCHHHHHHHHccCCCCceEEecCCCCCCCCCCHHHHhccc-cCcEEEecCCCCCcceeCCe
Q 007703 406 AVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVKPLILALSNPTSQSECTAEEAYTWS-KGRAIFASGSPFDPFEYNGK 484 (592)
Q Consensus 406 ~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~e~rPIIFaLSNPt~~aEct~e~A~~wt-~G~aifAsGSPF~pV~~~G~ 484 (592)
...-..|++|=--|.+ .-++.|.++-+..- || .+.-|-++... ....|-.||| |||
T Consensus 65 -~~~~~~d~vV~SPGi~-~~~p~v~~A~~~gi---~i-----------~~dieL~~r~~~~~p~vaITGT-------NGK 121 (448)
T COG0771 65 -EDLAEFDLVVKSPGIP-PTHPLVEAAKAAGI---EI-----------IGDIELFYRLSGEAPIVAITGT-------NGK 121 (448)
T ss_pred -hccccCCEEEECCCCC-CCCHHHHHHHHcCC---cE-----------EeHHHHHHHhcCCCCEEEEECC-------Cch
Confidence 2223467777555554 34565665555432 33 33445555543 4566777886 787
Q ss_pred eeC
Q 007703 485 VFV 487 (592)
Q Consensus 485 ~~~ 487 (592)
|-+
T Consensus 122 TTT 124 (448)
T COG0771 122 TTT 124 (448)
T ss_pred HHH
Confidence 543
No 307
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=52.59 E-value=89 Score=33.68 Aligned_cols=93 Identities=16% Similarity=0.202 Sum_probs=61.1
Q ss_pred HhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhh-ccccCCCCC
Q 007703 324 LIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPW-AHEHEPVNN 402 (592)
Q Consensus 324 ~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~f-A~~~~~~~~ 402 (592)
..|..+.+.++-|+|-|..|..||+.+. ++ |+ +|...|++.. +...+.+ ++. -+
T Consensus 139 ~~~~~l~gktvGIiG~GrIG~avA~r~~-~F----gm-------~v~y~~~~~~---------~~~~~~~~~~y----~~ 193 (324)
T COG1052 139 LLGFDLRGKTLGIIGLGRIGQAVARRLK-GF----GM-------KVLYYDRSPN---------PEAEKELGARY----VD 193 (324)
T ss_pred ccccCCCCCEEEEECCCHHHHHHHHHHh-cC----CC-------EEEEECCCCC---------hHHHhhcCcee----cc
Confidence 3456788999999999999999999887 43 54 4555666432 1111111 211 23
Q ss_pred HHHHhcccCCcEEEecc----CCCCCCCHHHHHHHHccCCCCceEEecC
Q 007703 403 LLDAVKVIKPTILIGSS----GVGRTFTKEVIEAMASFNEVKPLILALS 447 (592)
Q Consensus 403 L~e~V~~vkPtvLIG~S----~~~g~Ft~evv~~Ma~~~e~rPIIFaLS 447 (592)
|.|.++. .|+|+-.. ...++|+++.++.|.+ .-+|.=.|
T Consensus 194 l~ell~~--sDii~l~~Plt~~T~hLin~~~l~~mk~----ga~lVNta 236 (324)
T COG1052 194 LDELLAE--SDIISLHCPLTPETRHLINAEELAKMKP----GAILVNTA 236 (324)
T ss_pred HHHHHHh--CCEEEEeCCCChHHhhhcCHHHHHhCCC----CeEEEECC
Confidence 8888886 88888432 1236899999999986 44554433
No 308
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=52.19 E-value=6.8 Score=41.90 Aligned_cols=81 Identities=21% Similarity=0.349 Sum_probs=48.6
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhch-------hhcc-ccCCCCCHHH
Q 007703 334 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKK-------PWAH-EHEPVNNLLD 405 (592)
Q Consensus 334 iv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~-------~fA~-~~~~~~~L~e 405 (592)
|+|+|+|..|-.+++.|.+. ... .++.+.|++ ..+ +..... .+.+ +..+..+|.+
T Consensus 1 IlvlG~G~vG~~~~~~L~~~----~~~------~~v~va~r~----~~~---~~~~~~~~~~~~~~~~~~d~~~~~~l~~ 63 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARR----GPF------EEVTVADRN----PEK---AERLAEKLLGDRVEAVQVDVNDPESLAE 63 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCT----TCE-------EEEEEESS----HHH---HHHHHT--TTTTEEEEE--TTTHHHHHH
T ss_pred CEEEcCcHHHHHHHHHHhcC----CCC------CcEEEEECC----HHH---HHHHHhhccccceeEEEEecCCHHHHHH
Confidence 78999999999999988653 111 278888885 111 111111 1111 1122235888
Q ss_pred HhcccCCcEEEeccCCCCCCCHHHHHHHHc
Q 007703 406 AVKVIKPTILIGSSGVGRTFTKEVIEAMAS 435 (592)
Q Consensus 406 ~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~ 435 (592)
.++. .|++|-+++.. ++..|+++-.+
T Consensus 64 ~~~~--~dvVin~~gp~--~~~~v~~~~i~ 89 (386)
T PF03435_consen 64 LLRG--CDVVINCAGPF--FGEPVARACIE 89 (386)
T ss_dssp HHTT--SSEEEE-SSGG--GHHHHHHHHHH
T ss_pred HHhc--CCEEEECCccc--hhHHHHHHHHH
Confidence 8887 69999988865 78888887654
No 309
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=52.10 E-value=98 Score=29.45 Aligned_cols=112 Identities=19% Similarity=0.209 Sum_probs=60.5
Q ss_pred eecccCCCCCCccccchhhHHHHHHhcCCCCCceeeEEeecCCCchhcccCcccccccccCCChhhhHHHHHHHHHHHHH
Q 007703 192 RILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQ 271 (592)
Q Consensus 192 rILGLGDlG~~GmgI~iGKl~LYta~gGI~P~~~LPI~LDvGTnNe~LL~Dp~YlG~r~~R~~geeY~~~idefv~av~~ 271 (592)
||||+ |.|....|..+-.. ..--|-.+|.|+=.. ..+....+....+.+++.+ +..
T Consensus 1 rILGI-DPGl~~~G~av~~~-----------~~~~~~~~~~g~i~t-----------~~~~~~~~rl~~I~~~l~~-~i~ 56 (154)
T cd00529 1 RILGI-DPGSRNTGYGVIEQ-----------EGRKLIYLASGVIRT-----------SSDAPLPSRLKTIYDGLNE-VID 56 (154)
T ss_pred CEEEE-ccCcCceEEEEEEe-----------eCCeEEEEEeeEEEC-----------CCCCCHHHHHHHHHHHHHH-HHH
Confidence 56666 66766555554221 012356677775321 1222334555554454444 445
Q ss_pred hcCCCeeeeeec-CCCchHHHHHHHHcCCCceeccCCcchHHHHHHHHHHHHHHhCCCcc-----cceEEEeCcChHHH
Q 007703 272 NYGEKVLIQFED-FANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLA-----EHRFLFLGAGEAGT 344 (592)
Q Consensus 272 ~fGp~~lIqfED-f~~~~Af~lL~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~-----d~riv~~GAGsAg~ 344 (592)
.|-|+ .+-.|+ |-+.|.-..+.- .-+-..++.++...|.++. ..|-.+.|.|.|.-
T Consensus 57 ~~~Pd-~vaiE~~~~~~n~~s~~~l----------------~~~~Gvi~~~~~~~~i~v~e~~P~~vKk~~tG~G~A~K 118 (154)
T cd00529 57 QFQPD-VVAIERVFFAKNPDSALKL----------------GQARGALILALANRNLPVFEYTPNQVKKAVTGYGKADK 118 (154)
T ss_pred HhCCC-EEEEEEhhcccChHHHHHH----------------HHHHHHHHHHHHHcCCCEEEEccCeeEEEEECCCCCCH
Confidence 78786 566898 334442222110 1134556667777777754 45778889998875
No 310
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=52.01 E-value=54 Score=35.98 Aligned_cols=117 Identities=16% Similarity=0.243 Sum_probs=63.3
Q ss_pred ccc-ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhccccCCCCCHHHHh
Q 007703 329 LAE-HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAV 407 (592)
Q Consensus 329 l~d-~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V 407 (592)
+.. +||+|+|.|-.|++.+.+|... .| .-++...|.+=. ....+.|.. ...+...+ .+. +.+
T Consensus 4 ~~~~~~v~viG~G~sG~s~~~~l~~~----~~------~~~v~~~D~~~~--~~~~~~l~~-g~~~~~g~---~~~-~~~ 66 (438)
T PRK04663 4 WQGIKNVVVVGLGITGLSVVKHLRKY----QP------QLTVKVIDTRET--PPGQEQLPE-DVELHSGG---WNL-EWL 66 (438)
T ss_pred ccCCceEEEEeccHHHHHHHHHHHhc----CC------CCeEEEEeCCCC--chhHHHhhc-CCEEEeCC---CCh-HHh
Confidence 344 6899999999999999988753 22 125777886421 000011211 11111110 111 234
Q ss_pred cccCCcEEEeccCCCCCCCHHHHHHHHccCCCCceEEecCCCCCCCCCCHHHHhccccCcEEEecCCCCCcceeCCeee
Q 007703 408 KVIKPTILIGSSGVGRTFTKEVIEAMASFNEVKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVF 486 (592)
Q Consensus 408 ~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~e~rPIIFaLSNPt~~aEct~e~A~~wt~G~aifAsGSPF~pV~~~G~~~ 486 (592)
. ++|.+|=.++.+ --++++.++... . -||+ +.+|. ++.+.+.+.|-.||| ||||-
T Consensus 67 ~--~~d~vV~SpgI~-~~~p~~~~a~~~--g-i~i~-------~~~el----~~~~~~~~~I~VTGT-------nGKTT 121 (438)
T PRK04663 67 L--EADLVVTNPGIA-LATPEIQQVLAA--G-IPVV-------GDIEL----FAWAVDKPVIAITGS-------NGKST 121 (438)
T ss_pred c--cCCEEEECCCCC-CCCHHHHHHHHC--C-CcEE-------EHHHH----HHhhcCCCEEEEeCC-------CCHHH
Confidence 3 378777556655 346777776554 3 4553 33333 333445678888997 67654
No 311
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=51.99 E-value=48 Score=36.30 Aligned_cols=110 Identities=18% Similarity=0.183 Sum_probs=60.4
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchh--chhhccccCCCCCHHHHh
Q 007703 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF--KKPWAHEHEPVNNLLDAV 407 (592)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~--k~~fA~~~~~~~~L~e~V 407 (592)
+|-.|+|+|.|-.|+++|++|.+ .|. ++...|.+-- ....+.|... ..++.. ...+ .+.+
T Consensus 5 ~~~~~~v~G~G~sG~s~a~~L~~-----~G~-------~v~~~D~~~~--~~~~~~l~~~~~g~~~~~---~~~~-~~~~ 66 (448)
T PRK03803 5 SDGLHIVVGLGKTGLSVVRFLAR-----QGI-------PFAVMDSREQ--PPGLDTLAREFPDVELRC---GGFD-CELL 66 (448)
T ss_pred cCCeEEEEeecHhHHHHHHHHHh-----CCC-------eEEEEeCCCC--chhHHHHHhhcCCcEEEe---CCCC-hHHh
Confidence 57789999999999998888765 363 5778886421 0000112110 001110 0011 2334
Q ss_pred cccCCcEEEeccCCCCCCCHHHHHHHHccCCCCceEEecCCCCCCCCCCHHHHhccccCcEEEecCC
Q 007703 408 KVIKPTILIGSSGVGRTFTKEVIEAMASFNEVKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGS 474 (592)
Q Consensus 408 ~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~e~rPIIFaLSNPt~~aEct~e~A~~wt~G~aifAsGS 474 (592)
+ ++|++|=.++.+ --.+++.++... . .||+ +.+|.- +.....+.|-.|||
T Consensus 67 ~--~~d~vV~sp~i~-~~~p~~~~a~~~--~-i~i~-------~~~el~----~~~~~~~~I~VTGT 116 (448)
T PRK03803 67 V--QASEIIISPGLA-LDTPALRAAAAM--G-IEVI-------GDIELF----AREAKAPVIAITGS 116 (448)
T ss_pred c--CCCEEEECCCCC-CCCHHHHHHHHC--C-CcEE-------EHHHHH----HHhcCCCEEEEECC
Confidence 4 478887666665 346777776553 3 5665 223332 22235678888997
No 312
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=51.81 E-value=21 Score=39.02 Aligned_cols=86 Identities=9% Similarity=0.129 Sum_probs=46.8
Q ss_pred HHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhc----
Q 007703 319 VAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA---- 394 (592)
Q Consensus 319 l~Alr~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA---- 394 (592)
..++......|.+.|++|+|.+.-..++++++.+ .|+. +..+-+. .... +.....+..+.
T Consensus 275 ~~~l~~~~~~l~gkrv~i~~~~~~~~~la~~l~e-----lGm~-------v~~~~~~---~~~~-~~~~~~~~~~~~~~~ 338 (410)
T cd01968 275 RPELAPYRARLEGKKAALYTGGVKSWSLVSALQD-----LGME-------VVATGTQ---KGTK-EDYERIKELLGEGTV 338 (410)
T ss_pred HHHHHHHHHHhCCCEEEEEcCCchHHHHHHHHHH-----CCCE-------EEEEecc---cCCH-HHHHHHHHHhCCCcE
Confidence 3344444456778999999988888999987643 4873 2223111 1111 00111111110
Q ss_pred -cccCCCCCHHHHhcccCCcEEEeccC
Q 007703 395 -HEHEPVNNLLDAVKVIKPTILIGSSG 420 (592)
Q Consensus 395 -~~~~~~~~L~e~V~~vkPtvLIG~S~ 420 (592)
-...+...+.+.++..+||++||-|.
T Consensus 339 v~~~~~~~e~~~~i~~~~pDl~ig~s~ 365 (410)
T cd01968 339 IVDDANPRELKKLLKEKKADLLVAGGK 365 (410)
T ss_pred EEeCCCHHHHHHHHhhcCCCEEEECCc
Confidence 00111124668888899999999755
No 313
>PRK08163 salicylate hydroxylase; Provisional
Probab=51.69 E-value=18 Score=38.18 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=19.0
Q ss_pred cceEEEeCcChHHHHHHHHHHH
Q 007703 331 EHRFLFLGAGEAGTGIAELIAL 352 (592)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~ 352 (592)
..+|+|+|||.||+..|-.|..
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~ 25 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALAR 25 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHh
Confidence 4689999999999999987764
No 314
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=51.50 E-value=41 Score=35.57 Aligned_cols=104 Identities=16% Similarity=0.205 Sum_probs=63.6
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhccc----cCCCCCHHH
Q 007703 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE----HEPVNNLLD 405 (592)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~----~~~~~~L~e 405 (592)
.-+++.|+|+|.=|..-++.++.. ..+ ++|.+.|+. .+ +...+...+.+. -....+++|
T Consensus 116 da~~l~iiGaG~QA~~~~~a~~~v----~~i------~~v~v~~r~----~~---~a~~f~~~~~~~~~~~v~~~~~~~e 178 (301)
T PRK06407 116 NVENFTIIGSGFQAETQLEGMASV----YNP------KRIRVYSRN----FD---HARAFAERFSKEFGVDIRPVDNAEA 178 (301)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhc----CCC------CEEEEECCC----HH---HHHHHHHHHHHhcCCcEEEeCCHHH
Confidence 458999999999888777666552 233 778888773 22 233444444322 122468999
Q ss_pred HhcccCCcEEEeccCCC-CCCCHHHHHHHHccCCCCceEEec-CCCCCCCCCCHHH
Q 007703 406 AVKVIKPTILIGSSGVG-RTFTKEVIEAMASFNEVKPLILAL-SNPTSQSECTAEE 459 (592)
Q Consensus 406 ~V~~vkPtvLIG~S~~~-g~Ft~evv~~Ma~~~e~rPIIFaL-SNPt~~aEct~e~ 459 (592)
+++. .|+++-+++.. .+|..+.++. .--|-++ |+--.+.|+.++-
T Consensus 179 av~~--aDIV~taT~s~~P~~~~~~l~p-------g~hV~aiGs~~p~~~El~~~~ 225 (301)
T PRK06407 179 ALRD--ADTITSITNSDTPIFNRKYLGD-------EYHVNLAGSNYPNRREAEHSV 225 (301)
T ss_pred HHhc--CCEEEEecCCCCcEecHHHcCC-------CceEEecCCCCCCcccCCHHH
Confidence 9986 99999764432 3677776652 2234444 2222468888763
No 315
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=51.34 E-value=57 Score=33.61 Aligned_cols=63 Identities=14% Similarity=0.358 Sum_probs=39.1
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhccccCCCCCHHHHhcccC
Q 007703 333 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 411 (592)
Q Consensus 333 riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vk 411 (592)
||+|.|| |-.|--+++.|.. .| +++.+|+..-. +.-+-.....+.++++..+
T Consensus 2 ~iLVtG~~GfiGs~l~~~L~~-----~g--------~V~~~~~~~~~--------------~~~Dl~d~~~~~~~~~~~~ 54 (299)
T PRK09987 2 NILLFGKTGQVGWELQRALAP-----LG--------NLIALDVHSTD--------------YCGDFSNPEGVAETVRKIR 54 (299)
T ss_pred eEEEECCCCHHHHHHHHHhhc-----cC--------CEEEecccccc--------------ccCCCCCHHHHHHHHHhcC
Confidence 7999997 9999888776643 13 35666653110 0011112235777888888
Q ss_pred CcEEEeccCCC
Q 007703 412 PTILIGSSGVG 422 (592)
Q Consensus 412 PtvLIG~S~~~ 422 (592)
||++|=+.+..
T Consensus 55 ~D~Vih~Aa~~ 65 (299)
T PRK09987 55 PDVIVNAAAHT 65 (299)
T ss_pred CCEEEECCccC
Confidence 99999766544
No 316
>PLN02268 probable polyamine oxidase
Probab=51.30 E-value=5.7 Score=42.82 Aligned_cols=31 Identities=23% Similarity=0.395 Sum_probs=23.8
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcC--CChhhhcCc
Q 007703 333 RFLFLGAGEAGTGIAELIALEISKQTK--APVEETRKK 368 (592)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G--~s~eeA~~~ 368 (592)
+|+|+|||-||+..|..|.+. | +..=||+.|
T Consensus 2 ~VvVIGaGisGL~aA~~L~~~-----g~~v~vlEa~~r 34 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHDA-----SFKVTLLESRDR 34 (435)
T ss_pred CEEEECCCHHHHHHHHHHHhC-----CCeEEEEeCCCC
Confidence 789999999999999998763 4 344556553
No 317
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=51.30 E-value=19 Score=43.88 Aligned_cols=40 Identities=18% Similarity=0.265 Sum_probs=31.6
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC----CcccC
Q 007703 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK----GLIVS 380 (592)
Q Consensus 329 l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~----GLv~~ 380 (592)
-.+.||+|+|||.||+..|..|.. .|. ++.++|+. |++.-
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar-----~G~-------~VtVfE~~~~~GG~l~y 347 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAV-----EGF-------PVTVFEAFHDLGGVLRY 347 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEeeCCCCCceEEc
Confidence 458999999999999999998875 363 67888875 66543
No 318
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=51.25 E-value=18 Score=41.86 Aligned_cols=35 Identities=26% Similarity=0.471 Sum_probs=28.1
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 329 l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
-.+.+|+|+|||.||+..|..|.. .|. ++.++|+.
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~-----~G~-------~V~V~E~~ 359 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLAR-----NGV-------AVTVYDRH 359 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEecC
Confidence 357899999999999999988875 363 47788874
No 319
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=51.02 E-value=20 Score=33.17 Aligned_cols=31 Identities=32% Similarity=0.363 Sum_probs=20.6
Q ss_pred HHHHhcccCCcEEEeccCCCCCCCHHHHHHHHc
Q 007703 403 LLDAVKVIKPTILIGSSGVGRTFTKEVIEAMAS 435 (592)
Q Consensus 403 L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~ 435 (592)
+.+..+.-+-|+||+.|+.|+ |+-+|+++..
T Consensus 95 ~~~~~~~~~gDvli~iS~SG~--s~~vi~a~~~ 125 (138)
T PF13580_consen 95 LLALYDIRPGDVLIVISNSGN--SPNVIEAAEE 125 (138)
T ss_dssp HHHHTT--TT-EEEEEESSS---SHHHHHHHHH
T ss_pred HHHHcCCCCCCEEEEECCCCC--CHHHHHHHHH
Confidence 444433346799999999998 8999988753
No 320
>PRK12828 short chain dehydrogenase; Provisional
Probab=50.99 E-value=26 Score=33.56 Aligned_cols=36 Identities=22% Similarity=0.367 Sum_probs=23.5
Q ss_pred CcccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 328 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 328 ~l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
.+++.+++|.|| |..|..+++.++ + .|. +++++|++
T Consensus 4 ~~~~k~vlItGatg~iG~~la~~l~----~-~G~-------~v~~~~r~ 40 (239)
T PRK12828 4 SLQGKVVAITGGFGGLGRATAAWLA----A-RGA-------RVALIGRG 40 (239)
T ss_pred CCCCCEEEEECCCCcHhHHHHHHHH----H-CCC-------eEEEEeCC
Confidence 466789999997 555555555553 3 253 58888874
No 321
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=50.81 E-value=22 Score=37.60 Aligned_cols=38 Identities=29% Similarity=0.313 Sum_probs=27.3
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHccCCC-CceEEecCCCC
Q 007703 411 KPTILIGSSGVGRTFTKEVIEAMASFNEV-KPLILALSNPT 450 (592)
Q Consensus 411 kPtvLIG~S~~~g~Ft~evv~~Ma~~~e~-rPIIFaLSNPt 450 (592)
+-|++||.|..|. |++++.++....+. -|+|.=-+||.
T Consensus 131 ~~DvvI~IS~SG~--T~~vi~al~~Ak~~Ga~tI~IT~~~~ 169 (299)
T PRK05441 131 AKDVVVGIAASGR--TPYVIGALEYARERGALTIGISCNPG 169 (299)
T ss_pred CCCEEEEEeCCCC--CHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 5799999999886 99999998643331 35555555666
No 322
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=50.67 E-value=27 Score=36.93 Aligned_cols=38 Identities=26% Similarity=0.372 Sum_probs=28.2
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHccCCC-CceEEecCCCC
Q 007703 411 KPTILIGSSGVGRTFTKEVIEAMASFNEV-KPLILALSNPT 450 (592)
Q Consensus 411 kPtvLIG~S~~~g~Ft~evv~~Ma~~~e~-rPIIFaLSNPt 450 (592)
+-|++||+|..|. |+++++.+....+. -|+|.=-+||.
T Consensus 126 ~~DvvI~IS~SG~--T~~vi~al~~Ak~~Ga~tIaIT~~~~ 164 (291)
T TIGR00274 126 KNDVVVGIAASGR--TPYVIAGLQYARSLGALTISIACNPK 164 (291)
T ss_pred CCCEEEEEeCCCC--cHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 5699999999886 99999998643330 37776566676
No 323
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=50.63 E-value=23 Score=33.56 Aligned_cols=102 Identities=17% Similarity=0.234 Sum_probs=54.7
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhccc-cCCCCCHHHHhccc
Q 007703 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEPVNNLLDAVKVI 410 (592)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~-~~~~~~L~e~V~~v 410 (592)
.||-|+|.|..|.+||+-|... | -+++.+|+. .+ ..+ .+... .....|+.|+++.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~-----g-------~~v~~~d~~----~~---~~~----~~~~~g~~~~~s~~e~~~~- 57 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKA-----G-------YEVTVYDRS----PE---KAE----ALAEAGAEVADSPAEAAEQ- 57 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHT-----T-------TEEEEEESS----HH---HHH----HHHHTTEEEESSHHHHHHH-
T ss_pred CEEEEEchHHHHHHHHHHHHhc-----C-------CeEEeeccc----hh---hhh----hhHHhhhhhhhhhhhHhhc-
Confidence 5899999999999999998642 5 368888753 11 122 22221 2234688999987
Q ss_pred CCcEEEeccCCCCCCCHHHHHH--HHc-cCCCCceEEecCCCCCCCCCCHHHHhc
Q 007703 411 KPTILIGSSGVGRTFTKEVIEA--MAS-FNEVKPLILALSNPTSQSECTAEEAYT 462 (592)
Q Consensus 411 kPtvLIG~S~~~g~Ft~evv~~--Ma~-~~e~rPIIFaLSNPt~~aEct~e~A~~ 462 (592)
.|++|=+-.-+ .=.++++.. +.+ ..+ ..||.=+|+-. +|.+-+-+-.
T Consensus 58 -~dvvi~~v~~~-~~v~~v~~~~~i~~~l~~-g~iiid~sT~~--p~~~~~~~~~ 107 (163)
T PF03446_consen 58 -ADVVILCVPDD-DAVEAVLFGENILAGLRP-GKIIIDMSTIS--PETSRELAER 107 (163)
T ss_dssp -BSEEEE-SSSH-HHHHHHHHCTTHGGGS-T-TEEEEE-SS----HHHHHHHHHH
T ss_pred -ccceEeecccc-hhhhhhhhhhHHhhcccc-ceEEEecCCcc--hhhhhhhhhh
Confidence 57776432211 113444444 333 334 66777777655 5554443333
No 324
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=50.52 E-value=21 Score=39.58 Aligned_cols=34 Identities=21% Similarity=0.408 Sum_probs=27.6
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
.+.+|+|+|||.||+..|..+.. .| .++.++|+.
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~-----~G-------~~V~vie~~ 175 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLAR-----AG-------HKVTVFERA 175 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHh-----CC-------CcEEEEecC
Confidence 46799999999999999887754 25 368888875
No 325
>PRK06392 homoserine dehydrogenase; Provisional
Probab=50.32 E-value=63 Score=34.83 Aligned_cols=82 Identities=15% Similarity=0.269 Sum_probs=48.9
Q ss_pred eEEEeCcChHHHHHHHHHHHHHH-HhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhccc----cCCCC--CHHH
Q 007703 333 RFLFLGAGEAGTGIAELIALEIS-KQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE----HEPVN--NLLD 405 (592)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~-~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~----~~~~~--~L~e 405 (592)
||.++|-|..|-+++++|.+.-. ++.|+. -+=+-+.|++|.+...+.=++.+... +... ..... ++.+
T Consensus 2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~----l~VVaVsds~g~l~~~~Gldl~~l~~-~~~~g~l~~~~~~~~~~~~ 76 (326)
T PRK06392 2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNG----ISVVSVSDSKLSYYNERGLDIGKIIS-YKEKGRLEEIDYEKIKFDE 76 (326)
T ss_pred EEEEECCCHHHHHHHHHHHhCHHhHhcCCC----eEEEEEEECCCcccCCcCCChHHHHH-HHhcCccccCCCCcCCHHH
Confidence 79999999999999999876210 112321 12245679999888765322322211 1110 01112 5666
Q ss_pred HhcccCCcEEEeccC
Q 007703 406 AVKVIKPTILIGSSG 420 (592)
Q Consensus 406 ~V~~vkPtvLIG~S~ 420 (592)
.+. .+||++|=+++
T Consensus 77 ll~-~~~DVvVE~t~ 90 (326)
T PRK06392 77 IFE-IKPDVIVDVTP 90 (326)
T ss_pred Hhc-CCCCEEEECCC
Confidence 665 58999998874
No 326
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=50.32 E-value=1.3e+02 Score=38.14 Aligned_cols=120 Identities=21% Similarity=0.276 Sum_probs=73.7
Q ss_pred HHHHHHHHHhcCCCeeeeeecCCCc-------hHHHHHHHHcCCCceeccCCcchHHHHHHHHHHHHHHhCCCcccceEE
Q 007703 263 DEFMSAVKQNYGEKVLIQFEDFANH-------NAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFL 335 (592)
Q Consensus 263 defv~av~~~fGp~~lIqfEDf~~~-------~Af~lL~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~d~riv 335 (592)
-+.+++.-+.++.+.+|| |++.. +-+++..+|.-.+++.+=|-+|.+.- .+.|
T Consensus 441 ~~ViEaaLk~~~G~~IIN--SIs~~~~~~~~~~~~~l~~kyga~vV~m~~de~G~~~t----------------~e~r-- 500 (1229)
T PRK09490 441 WEVIEAGLKCIQGKGIVN--SISLKEGEEKFIEHARLVRRYGAAVVVMAFDEQGQADT----------------RERK-- 500 (1229)
T ss_pred HHHHHHHHhhcCCCCEEE--eCCCCCCCccHHHHHHHHHHhCCCEEEEecCCCCCCCC----------------HHHH--
Confidence 466777777776777876 44432 36778889988888888776775533 1222
Q ss_pred EeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhccccCCCCCHHHHhcccC----
Q 007703 336 FLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK---- 411 (592)
Q Consensus 336 ~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vk---- 411 (592)
+-||+.+...+.++.|++. ++|+ +|.-=+ +-+ ....+| ..+|. ...|+|+.+|
T Consensus 501 --------~~ia~r~~~~~~~~~Gi~~----~dIi-~Dplv~-~v~--t~~ee~-~~~~~------~~leair~ik~~~P 557 (1229)
T PRK09490 501 --------IEICKRAYDILTEEVGFPP----EDII-FDPNIF-AVA--TGIEEH-NNYAV------DFIEATRWIKQNLP 557 (1229)
T ss_pred --------HHHHHHHHHHHHHHcCCCH----HHEE-EcCCcc-eee--cChHHH-HHHHH------HHHHHHHHHHHHCC
Confidence 3788888887765579975 4565 787311 211 112222 23443 2346666333
Q ss_pred -CcEEEeccCCCCCC
Q 007703 412 -PTILIGSSGVGRTF 425 (592)
Q Consensus 412 -PtvLIG~S~~~g~F 425 (592)
..+.+|+|...=-|
T Consensus 558 ~~~~~~GlSNiSFgl 572 (1229)
T PRK09490 558 HAKISGGVSNVSFSF 572 (1229)
T ss_pred CCcEEEeeccccccC
Confidence 35889999987555
No 327
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=50.32 E-value=70 Score=32.01 Aligned_cols=78 Identities=13% Similarity=0.215 Sum_probs=43.3
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhc----hhhcc-ccCCCCCHHHH
Q 007703 333 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK----KPWAH-EHEPVNNLLDA 406 (592)
Q Consensus 333 riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k----~~fA~-~~~~~~~L~e~ 406 (592)
+|+|.|| |..|-.+++.|+.. |- ..+++.+|+... ..+.+.+.... ..+-. +-....++.++
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~-----~~-----~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 68 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNE-----HP-----DAEVIVLDKLTY--AGNLENLADLEDNPRYRFVKGDIGDRELVSRL 68 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHh-----CC-----CCEEEEecCCCc--chhhhhhhhhccCCCcEEEEcCCcCHHHHHHH
Confidence 5788887 77887777766542 31 136777775211 01111111110 11111 22233467888
Q ss_pred hcccCCcEEEeccCCC
Q 007703 407 VKVIKPTILIGSSGVG 422 (592)
Q Consensus 407 V~~vkPtvLIG~S~~~ 422 (592)
++..+||++|=+++..
T Consensus 69 ~~~~~~d~vi~~a~~~ 84 (317)
T TIGR01181 69 FTEHQPDAVVHFAAES 84 (317)
T ss_pred HhhcCCCEEEEccccc
Confidence 8888899999888753
No 328
>PLN02240 UDP-glucose 4-epimerase
Probab=50.27 E-value=32 Score=35.54 Aligned_cols=107 Identities=17% Similarity=0.180 Sum_probs=58.4
Q ss_pred CcccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCch------hchhhcc-ccCC
Q 007703 328 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH------FKKPWAH-EHEP 399 (592)
Q Consensus 328 ~l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~------~k~~fA~-~~~~ 399 (592)
.|+..+|+|.|| |--|..+++.|++ .| .+++++|+..--.......+.. ....+.. +...
T Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~-----~g-------~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 69 (352)
T PLN02240 2 SLMGRTILVTGGAGYIGSHTVLQLLL-----AG-------YKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRD 69 (352)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHH-----CC-------CEEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCC
Confidence 466789999997 7788777777754 25 4688887542100000000000 0011111 1122
Q ss_pred CCCHHHHhcccCCcEEEeccCCCCC----------------CCHHHHHHHHccCCCCceEEecC
Q 007703 400 VNNLLDAVKVIKPTILIGSSGVGRT----------------FTKEVIEAMASFNEVKPLILALS 447 (592)
Q Consensus 400 ~~~L~e~V~~vkPtvLIG~S~~~g~----------------Ft~evv~~Ma~~~e~rPIIFaLS 447 (592)
..++.++++..+||++|=+.+.... -+..++++|.+.+- +.+||.=|
T Consensus 70 ~~~l~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~~v~~Ss 132 (352)
T PLN02240 70 KEALEKVFASTRFDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGC-KKLVFSSS 132 (352)
T ss_pred HHHHHHHHHhCCCCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCC-CEEEEEcc
Confidence 2356677777789999977764321 12356677766555 67887533
No 329
>PRK08618 ornithine cyclodeaminase; Validated
Probab=50.24 E-value=67 Score=34.08 Aligned_cols=104 Identities=15% Similarity=0.204 Sum_probs=58.6
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhccc----cCCCCCHHH
Q 007703 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE----HEPVNNLLD 405 (592)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~----~~~~~~L~e 405 (592)
...++.|+|+|..|-.++..++.. .++ +++.++|+. .+| ...+...+... .....++.+
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~----~~~------~~v~v~~r~----~~~---a~~~~~~~~~~~~~~~~~~~~~~~ 188 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAV----RDI------ERVRVYSRT----FEK---AYAFAQEIQSKFNTEIYVVNSADE 188 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhc----CCc------cEEEEECCC----HHH---HHHHHHHHHHhcCCcEEEeCCHHH
Confidence 457899999999987777655432 244 789988874 222 22233322211 112467888
Q ss_pred HhcccCCcEEEeccCCC-CCCCHHHHHHHHccCCCCceEEecC-CCCCCCCCCHHHHh
Q 007703 406 AVKVIKPTILIGSSGVG-RTFTKEVIEAMASFNEVKPLILALS-NPTSQSECTAEEAY 461 (592)
Q Consensus 406 ~V~~vkPtvLIG~S~~~-g~Ft~evv~~Ma~~~e~rPIIFaLS-NPt~~aEct~e~A~ 461 (592)
+++. .|++|-++..+ ..|+ +.++ . ---|.++- +--.+.|+.+ +.+
T Consensus 189 ~~~~--aDiVi~aT~s~~p~i~-~~l~------~-G~hV~~iGs~~p~~~E~~~-~~~ 235 (325)
T PRK08618 189 AIEE--ADIIVTVTNAKTPVFS-EKLK------K-GVHINAVGSFMPDMQELPS-EAI 235 (325)
T ss_pred HHhc--CCEEEEccCCCCcchH-HhcC------C-CcEEEecCCCCcccccCCH-HHH
Confidence 8875 88888665433 1233 3331 2 34455553 2224678887 344
No 330
>PRK09126 hypothetical protein; Provisional
Probab=50.09 E-value=19 Score=37.93 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=19.1
Q ss_pred cceEEEeCcChHHHHHHHHHHH
Q 007703 331 EHRFLFLGAGEAGTGIAELIAL 352 (592)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~ 352 (592)
+..|+|+|||.||+..|-.|.+
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~ 24 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAG 24 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHh
Confidence 4579999999999999988865
No 331
>PRK06138 short chain dehydrogenase; Provisional
Probab=49.63 E-value=54 Score=31.85 Aligned_cols=37 Identities=24% Similarity=0.381 Sum_probs=22.6
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 328 ~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
.|++.+++|.||.. ||+..|+..+.+ .| .++++++++
T Consensus 2 ~~~~k~~lItG~sg---~iG~~la~~l~~-~G-------~~v~~~~r~ 38 (252)
T PRK06138 2 RLAGRVAIVTGAGS---GIGRATAKLFAR-EG-------ARVVVADRD 38 (252)
T ss_pred CCCCcEEEEeCCCc---hHHHHHHHHHHH-CC-------CeEEEecCC
Confidence 36778999999831 444444444443 25 367877764
No 332
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=49.60 E-value=21 Score=38.52 Aligned_cols=35 Identities=20% Similarity=0.299 Sum_probs=26.5
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcc
Q 007703 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 378 (592)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv 378 (592)
-.|+|+|||.||...|..+.+. |+ ++.++|++..+
T Consensus 4 ~DVvIVGaGPAGs~aA~~la~~-----G~-------~VlvlEk~~~~ 38 (396)
T COG0644 4 YDVVIVGAGPAGSSAARRLAKA-----GL-------DVLVLEKGSEP 38 (396)
T ss_pred eeEEEECCchHHHHHHHHHHHc-----CC-------eEEEEecCCCC
Confidence 4689999999999999988764 54 45666665444
No 333
>PRK06475 salicylate hydroxylase; Provisional
Probab=49.57 E-value=18 Score=38.63 Aligned_cols=21 Identities=38% Similarity=0.322 Sum_probs=18.5
Q ss_pred ceEEEeCcChHHHHHHHHHHH
Q 007703 332 HRFLFLGAGEAGTGIAELIAL 352 (592)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~ 352 (592)
+||+|+|||.||+..|-.|.+
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~ 23 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAA 23 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHh
Confidence 799999999999999877754
No 334
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=49.48 E-value=16 Score=38.84 Aligned_cols=35 Identities=20% Similarity=0.348 Sum_probs=26.3
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCC
Q 007703 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (592)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 376 (592)
.+|||+|+|.||+..|+.|... +- .-+|.+++...
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~-----~~-----~~~Itvi~~~~ 37 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQ-----DA-----HIPITLITADS 37 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhh-----Cc-----CCCEEEEeCCC
Confidence 4899999999999999988542 11 24688887654
No 335
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=49.42 E-value=51 Score=36.92 Aligned_cols=82 Identities=11% Similarity=0.004 Sum_probs=44.8
Q ss_pred HHHHHHHHHhcCCCeeeeee-cCCCchHHHHHHHHcC----CCceeccCCcchHHHHHHHHHHHHHHhCCCcccceEEEe
Q 007703 263 DEFMSAVKQNYGEKVLIQFE-DFANHNAFELLAKYGT----THLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFL 337 (592)
Q Consensus 263 defv~av~~~fGp~~lIqfE-Df~~~~Af~lL~ryr~----~~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~ 337 (592)
.++.+.++++||--.+ .+. =++-.+.-+.|++..+ ..+ +.++.-= +-++.++.-...-|.+.|+.|.
T Consensus 246 ~~~a~~Lee~~GiP~~-~~~~p~G~~~t~~~l~~l~~~~g~~~~---~~i~~er----~~~~~~~~d~~~~l~gkrvai~ 317 (455)
T PRK14476 246 RKAAEALEARTGVPYL-VFPSLTGLEAVDRFIATLAQISGRPVP---AKYRRQR----AQLQDAMLDGHFYFGGKRVAIA 317 (455)
T ss_pred HHHHHHHHHHhCCCeE-ecCCCcChHHHHHHHHHHHHHHCCCCc---HHHHHHH----HHHHHHHHHHHHHhcCCEEEEE
Confidence 4677778888874322 221 1444444455544432 111 1111111 1123333333345668999999
Q ss_pred CcChHHHHHHHHHHH
Q 007703 338 GAGEAGTGIAELIAL 352 (592)
Q Consensus 338 GAGsAg~GIA~ll~~ 352 (592)
|-+.-..|+++.|.+
T Consensus 318 ~~~~~~~~la~~L~e 332 (455)
T PRK14476 318 AEPDLLLALGSFLAE 332 (455)
T ss_pred eCHHHHHHHHHHHHH
Confidence 988999999998875
No 336
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=49.27 E-value=48 Score=34.83 Aligned_cols=122 Identities=20% Similarity=0.271 Sum_probs=68.5
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC-CcccCCCccCCchhchhhcccc-CCCCCHHHHhcccC
Q 007703 334 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK-GLIVSSRKDSLQHFKKPWAHEH-EPVNNLLDAVKVIK 411 (592)
Q Consensus 334 iv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~-GLv~~~R~~~l~~~k~~fA~~~-~~~~~L~e~V~~vk 411 (592)
|.|+|||..|..+|-.++. .|+. +.+.++|.+ .++..-.. +|.+...++.... ....+ .+.+++
T Consensus 1 i~iiGaG~VG~~~a~~l~~-----~~~~-----~el~l~D~~~~~~~g~~~-DL~~~~~~~~~~~i~~~~~-~~~l~~-- 66 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIA-----KGLA-----SELVLVDVNEEKAKGDAL-DLSHASAFLATGTIVRGGD-YADAAD-- 66 (300)
T ss_pred CEEECCCHHHHHHHHHHHh-----cCCC-----CEEEEEeCCccHHHHHHH-hHHHhccccCCCeEEECCC-HHHhCC--
Confidence 5789999999999876654 3652 579999973 22111111 2433332221100 00133 356665
Q ss_pred CcEEEeccCCC---CC-----------CCHHHHHHHHccCCCCceEEecCCCCCCCCCCHHHHhccc--cCcEEEecC
Q 007703 412 PTILIGSSGVG---RT-----------FTKEVIEAMASFNEVKPLILALSNPTSQSECTAEEAYTWS--KGRAIFASG 473 (592)
Q Consensus 412 PtvLIG~S~~~---g~-----------Ft~evv~~Ma~~~e~rPIIFaLSNPt~~aEct~e~A~~wt--~G~aifAsG 473 (592)
.|++|=+.+.+ |- .=+++.+.+.+++. .-+|+=.|||. +....-+++++ +-+-+|++|
T Consensus 67 aDiVIitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p-~~~viv~sNP~---d~~~~~~~~~sg~~~~kviG~g 140 (300)
T cd00300 67 ADIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYGP-DAIILVVSNPV---DILTYVAQKLSGLPKNRVIGSG 140 (300)
T ss_pred CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEccChH---HHHHHHHHHHhCcCHHHEEecC
Confidence 78777444432 21 11457777788898 99999999998 34444444432 112355554
No 337
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=49.21 E-value=97 Score=29.58 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=20.1
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHcc
Q 007703 411 KPTILIGSSGVGRTFTKEVIEAMASF 436 (592)
Q Consensus 411 kPtvLIG~S~~~g~Ft~evv~~Ma~~ 436 (592)
+-|++|+.|..|. |+++++.+...
T Consensus 101 ~~Dv~I~iS~SG~--t~~~i~~~~~a 124 (177)
T cd05006 101 PGDVLIGISTSGN--SPNVLKALEAA 124 (177)
T ss_pred CCCEEEEEeCCCC--CHHHHHHHHHH
Confidence 4799999999875 99999998643
No 338
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=49.18 E-value=24 Score=28.99 Aligned_cols=30 Identities=20% Similarity=0.347 Sum_probs=23.1
Q ss_pred EeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCc
Q 007703 336 FLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (592)
Q Consensus 336 ~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GL 377 (592)
|+|||.+|+..|-.|.+. | .++.+++++--
T Consensus 1 IiGaG~sGl~aA~~L~~~-----g-------~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKA-----G-------YRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHT-----T-------SEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHC-----C-------CcEEEEecCcc
Confidence 789999999999888652 4 58899988643
No 339
>PRK12829 short chain dehydrogenase; Provisional
Probab=49.12 E-value=54 Score=32.11 Aligned_cols=37 Identities=24% Similarity=0.396 Sum_probs=23.1
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 328 ~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
.+++.+++|.||. . ||...++..+.+ .| .++++++++
T Consensus 8 ~~~~~~vlItGa~-g--~iG~~~a~~L~~-~g-------~~V~~~~r~ 44 (264)
T PRK12829 8 PLDGLRVLVTGGA-S--GIGRAIAEAFAE-AG-------ARVHVCDVS 44 (264)
T ss_pred ccCCCEEEEeCCC-C--cHHHHHHHHHHH-CC-------CEEEEEeCC
Confidence 3788999999984 1 334444444433 36 358888763
No 340
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=48.97 E-value=56 Score=35.67 Aligned_cols=31 Identities=26% Similarity=0.343 Sum_probs=25.2
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
||.|+|+|..|..+|..+... | .+++.+|++
T Consensus 2 kI~vIGlG~~G~~lA~~La~~-----G-------~~V~~~d~~ 32 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADL-----G-------HEVTGVDID 32 (411)
T ss_pred EEEEECCCchhHHHHHHHHhc-----C-------CeEEEEECC
Confidence 789999999999999988652 5 357888874
No 341
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=48.89 E-value=1.1e+02 Score=32.73 Aligned_cols=104 Identities=14% Similarity=0.120 Sum_probs=63.8
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhcccc---CCCCCHHHH
Q 007703 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH---EPVNNLLDA 406 (592)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~---~~~~~L~e~ 406 (592)
.-.++.|+|+|.-|-.-++.+... . . -++++++|+. .++ ...+...+.+.. ....+..|+
T Consensus 127 ~~~~lgiiG~G~qA~~~l~al~~~--~--~------~~~v~V~~r~----~~~---~~~~~~~~~~~g~~v~~~~~~~ea 189 (325)
T TIGR02371 127 DSSVLGIIGAGRQAWTQLEALSRV--F--D------LEEVSVYCRT----PST---REKFALRASDYEVPVRAATDPREA 189 (325)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhc--C--C------CCEEEEECCC----HHH---HHHHHHHHHhhCCcEEEeCCHHHH
Confidence 358899999999876655444331 1 2 2788988873 222 223333222211 124689999
Q ss_pred hcccCCcEEEecc-CCCCCCCHHHHHHHHccCCCCceEEecCCCC-CCCCCCHHH
Q 007703 407 VKVIKPTILIGSS-GVGRTFTKEVIEAMASFNEVKPLILALSNPT-SQSECTAEE 459 (592)
Q Consensus 407 V~~vkPtvLIG~S-~~~g~Ft~evv~~Ma~~~e~rPIIFaLSNPt-~~aEct~e~ 459 (592)
++. .|++|-++ +....|..+.++ + ..-|-++.-.+ .+.|+.++-
T Consensus 190 v~~--aDiVitaT~s~~P~~~~~~l~------~-g~~v~~vGs~~p~~~Eld~~~ 235 (325)
T TIGR02371 190 VEG--CDILVTTTPSRKPVVKADWVS------E-GTHINAIGADAPGKQELDPEI 235 (325)
T ss_pred hcc--CCEEEEecCCCCcEecHHHcC------C-CCEEEecCCCCcccccCCHHH
Confidence 975 89998654 333477777664 3 55688886544 368999864
No 342
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=48.80 E-value=18 Score=38.42 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=19.4
Q ss_pred cceEEEeCcChHHHHHHHHHHH
Q 007703 331 EHRFLFLGAGEAGTGIAELIAL 352 (592)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~ 352 (592)
+.+|+|+|||.||+..|-.|.+
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~ 39 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKD 39 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhc
Confidence 4689999999999999988865
No 343
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=48.59 E-value=20 Score=39.04 Aligned_cols=40 Identities=25% Similarity=0.412 Sum_probs=33.7
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCc
Q 007703 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (592)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GL 377 (592)
.+|++|=||++|||..|.=++++|+.. |+ .+|-+||-+-.
T Consensus 70 ~kl~~syVVVVG~GgVGSwv~nmL~RS-----G~------qKi~iVDfdqV 109 (430)
T KOG2018|consen 70 EKLTNSYVVVVGAGGVGSWVANMLLRS-----GV------QKIRIVDFDQV 109 (430)
T ss_pred HHhcCcEEEEEecCchhHHHHHHHHHh-----cC------ceEEEechhhc
Confidence 468899999999999999999999864 76 78888887643
No 344
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=48.54 E-value=23 Score=39.60 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=21.1
Q ss_pred CcccceEEEeCcChHHHHHHHHHHH
Q 007703 328 TLAEHRFLFLGAGEAGTGIAELIAL 352 (592)
Q Consensus 328 ~l~d~riv~~GAGsAg~GIA~ll~~ 352 (592)
+....+|+|+|||.||+..|..+.+
T Consensus 7 ~~~~~~VaIIGAG~aGL~aA~~l~~ 31 (461)
T PLN02172 7 PINSQHVAVIGAGAAGLVAARELRR 31 (461)
T ss_pred CCCCCCEEEECCcHHHHHHHHHHHh
Confidence 3456799999999999999988765
No 345
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=48.45 E-value=20 Score=37.87 Aligned_cols=31 Identities=26% Similarity=0.424 Sum_probs=24.6
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCC
Q 007703 334 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (592)
Q Consensus 334 iv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 376 (592)
|+|+|||.||+..|..+.+ .|+ ++.++|++.
T Consensus 2 viIiGaG~AGl~~A~~la~-----~g~-------~v~liE~~~ 32 (388)
T TIGR01790 2 LAVIGGGPAGLAIALELAR-----PGL-------RVQLIEPHP 32 (388)
T ss_pred EEEECCCHHHHHHHHHHHh-----CCC-------eEEEEccCC
Confidence 7999999999999977653 253 688898764
No 346
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=48.36 E-value=55 Score=33.68 Aligned_cols=31 Identities=16% Similarity=0.248 Sum_probs=24.8
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
||-|+|.|..|..+|..+... |. +++++|++
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~-----G~-------~V~~~dr~ 31 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKA-----GY-------QLHVTTIG 31 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHC-----CC-------eEEEEcCC
Confidence 588999999999999988752 53 57777765
No 347
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=47.96 E-value=28 Score=38.28 Aligned_cols=105 Identities=18% Similarity=0.259 Sum_probs=57.6
Q ss_pred eEEEeCcChHHHH-HHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhccccCCCCCHHHHhcccC
Q 007703 333 RFLFLGAGEAGTG-IAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 411 (592)
Q Consensus 333 riv~~GAGsAg~G-IA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vk 411 (592)
+|.|+|.|-+|++ +|++|.+ .|. ++...|.+--- ..+.|......+- .. .+ .+.++ +
T Consensus 1 ~~~~iGiggsGm~~la~~L~~-----~G~-------~v~~~D~~~~~---~~~~l~~~gi~~~---~g-~~-~~~~~--~ 58 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLN-----RGY-------QVSGSDIAENA---TTKRLEALGIPIY---IG-HS-AENLD--D 58 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHH-----CCC-------eEEEECCCcch---HHHHHHHCcCEEe---CC-CC-HHHCC--C
Confidence 5899999999998 8998865 363 57778864210 1011211111110 01 11 12343 3
Q ss_pred CcEEEeccCCCCCCCHHHHHHHHccCCCCceEEecCCCCCCCCCCHHHHhccc-cCcEEEecCC
Q 007703 412 PTILIGSSGVGRTFTKEVIEAMASFNEVKPLILALSNPTSQSECTAEEAYTWS-KGRAIFASGS 474 (592)
Q Consensus 412 PtvLIG~S~~~g~Ft~evv~~Ma~~~e~rPIIFaLSNPt~~aEct~e~A~~wt-~G~aifAsGS 474 (592)
+|.+|=.++.+ --++++.++... . .||+ +.+|. ++.+. +.+.|-.|||
T Consensus 59 ~d~vV~spgi~-~~~p~~~~a~~~--~-i~v~-------~~~el----~~~~~~~~~~IaITGT 107 (448)
T TIGR01082 59 ADVVVVSAAIK-DDNPEIVEAKER--G-IPVI-------RRAEM----LAELMRFRHSIAVAGT 107 (448)
T ss_pred CCEEEECCCCC-CCCHHHHHHHHc--C-CceE-------eHHHH----HHHHHhcCcEEEEECC
Confidence 78888666665 357788777654 3 4554 33333 22332 3467777886
No 348
>PRK13937 phosphoheptose isomerase; Provisional
Probab=47.84 E-value=69 Score=31.29 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=19.3
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHc
Q 007703 411 KPTILIGSSGVGRTFTKEVIEAMAS 435 (592)
Q Consensus 411 kPtvLIG~S~~~g~Ft~evv~~Ma~ 435 (592)
+-|++|++|..|. |+++++.+..
T Consensus 106 ~~Dl~i~iS~sG~--t~~~~~~~~~ 128 (188)
T PRK13937 106 PGDVLIGISTSGN--SPNVLAALEK 128 (188)
T ss_pred CCCEEEEEeCCCC--cHHHHHHHHH
Confidence 4699999999886 9999988754
No 349
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=47.81 E-value=74 Score=35.43 Aligned_cols=103 Identities=22% Similarity=0.270 Sum_probs=76.1
Q ss_pred ccCCcchHHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCc
Q 007703 304 NDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRK 383 (592)
Q Consensus 304 NDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~ 383 (592)
.|.-.||+--++-|++. .|..-+....+|+.|=|--|-|||..+.. .| -++++.+-
T Consensus 185 FDNrYGtgqS~~DgI~R---aTn~liaGK~vVV~GYG~vGrG~A~~~rg-----~G-------A~ViVtEv--------- 240 (420)
T COG0499 185 FDNRYGTGQSLLDGILR---ATNVLLAGKNVVVAGYGWVGRGIAMRLRG-----MG-------ARVIVTEV--------- 240 (420)
T ss_pred cccccccchhHHHHHHh---hhceeecCceEEEecccccchHHHHHhhc-----CC-------CeEEEEec---------
Confidence 36778999999999874 56677899999999999999999987743 24 23443322
Q ss_pred cCCchhchhhcc-ccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHc
Q 007703 384 DSLQHFKKPWAH-EHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMAS 435 (592)
Q Consensus 384 ~~l~~~k~~fA~-~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~ 435 (592)
+|.+.-=|. ++=..-++.||++. .|++|=++|.-++.+.|.++.|..
T Consensus 241 ---DPI~AleA~MdGf~V~~m~~Aa~~--gDifiT~TGnkdVi~~eh~~~MkD 288 (420)
T COG0499 241 ---DPIRALEAAMDGFRVMTMEEAAKT--GDIFVTATGNKDVIRKEHFEKMKD 288 (420)
T ss_pred ---CchHHHHHhhcCcEEEEhHHhhhc--CCEEEEccCCcCccCHHHHHhccC
Confidence 122211121 22233578999987 899999999999999999999984
No 350
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=47.75 E-value=67 Score=36.26 Aligned_cols=111 Identities=11% Similarity=0.013 Sum_probs=63.2
Q ss_pred ceEEEeCc-ChHHHHHHHHHHHH-HHH-hcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhccccCCCCCHHHHhc
Q 007703 332 HRFLFLGA-GEAGTGIAELIALE-ISK-QTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVK 408 (592)
Q Consensus 332 ~riv~~GA-GsAg~GIA~ll~~~-~~~-~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~ 408 (592)
.||.|+|| |..|..+|-.|+.. +.. .+|+ -.++.++|.+-=...+-.-+|.+-.-++-++-.-..+-.+..+
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i-----~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~k 175 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPI-----ALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQ 175 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCc-----ccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhC
Confidence 69999999 99999999987652 100 0133 2468888874111111100122222122211000112346666
Q ss_pred ccCCcEEEeccCCC---CC-----------CCHHHHHHHHc-cCCCCceEEecCCCC
Q 007703 409 VIKPTILIGSSGVG---RT-----------FTKEVIEAMAS-FNEVKPLILALSNPT 450 (592)
Q Consensus 409 ~vkPtvLIG~S~~~---g~-----------Ft~evv~~Ma~-~~e~rPIIFaLSNPt 450 (592)
+ .|++|=+.+.+ |- .=+++.+.+.+ .+. .-||+-.|||-
T Consensus 176 d--aDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p-~~ivIVVsNPv 229 (444)
T PLN00112 176 D--AEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASR-NVKVIVVGNPC 229 (444)
T ss_pred c--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCC-CeEEEEcCCcH
Confidence 5 88888665553 21 12456777777 588 99999999997
No 351
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=47.70 E-value=21 Score=39.82 Aligned_cols=38 Identities=24% Similarity=0.323 Sum_probs=33.0
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
+.|++-+|+++|+|..|.-+++.|+.. |+ ++|.++|.+
T Consensus 16 ~~L~~s~VlliG~gglGsEilKNLvL~-----GI------g~~tIvD~~ 53 (425)
T cd01493 16 AALESAHVCLLNATATGTEILKNLVLP-----GI------GSFTIVDGS 53 (425)
T ss_pred HHHhhCeEEEEcCcHHHHHHHHHHHHc-----CC------CeEEEECCC
Confidence 357889999999999999999988774 87 789999986
No 352
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=47.54 E-value=22 Score=38.87 Aligned_cols=31 Identities=26% Similarity=0.616 Sum_probs=25.0
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
.++|+|||.||+.+|..+.+ .| .++.++|+.
T Consensus 3 DvvIIGaG~aGlsaA~~La~-----~G-------~~V~viEk~ 33 (377)
T TIGR00031 3 DYIIVGAGLSGIVLANILAQ-----LN-------KRVLVVEKR 33 (377)
T ss_pred cEEEECCCHHHHHHHHHHHh-----CC-------CeEEEEecC
Confidence 58999999999999987764 25 468888874
No 353
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=47.36 E-value=19 Score=38.32 Aligned_cols=72 Identities=14% Similarity=0.230 Sum_probs=48.2
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhccccCCC----CC
Q 007703 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPV----NN 402 (592)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~----~~ 402 (592)
++|..-+|+++|+|.-|.-+|+-|+.+ |+ ++|.++|.+-. ..+ +| .+.|-...+-. .+
T Consensus 22 ~KL~~SrVLVVG~GGLGsEVAKnLaLA-----GV------GsItIvDdD~V-e~S---NL---~RQfl~~~dvGk~KAea 83 (287)
T PTZ00245 22 QQLMHTSVALHGVAGAAAEAAKNLVLA-----GV------RAVAVADEGLV-TDA---DV---CTNYLMQGEAGGTRGAR 83 (287)
T ss_pred HHHhhCeEEEECCCchHHHHHHHHHHc-----CC------CeEEEecCCcc-chh---hh---ccccccccccCCcHHHH
Confidence 568899999999999999999988775 87 78999998732 211 12 22222211111 24
Q ss_pred HHHHhcccCCcEEE
Q 007703 403 LLDAVKVIKPTILI 416 (592)
Q Consensus 403 L~e~V~~vkPtvLI 416 (592)
..+-++.+.|+|-|
T Consensus 84 Aa~~L~eLNP~V~V 97 (287)
T PTZ00245 84 ALGALQRLNPHVSV 97 (287)
T ss_pred HHHHHHHHCCCcEE
Confidence 56667777888877
No 354
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=47.30 E-value=2.1e+02 Score=36.23 Aligned_cols=91 Identities=18% Similarity=0.267 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhccccCCCCCHHHHhccc-----CCcEEEecc
Q 007703 345 GIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI-----KPTILIGSS 419 (592)
Q Consensus 345 GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~v-----kPtvLIG~S 419 (592)
-|++.++..+.++.|++. ++|| +|.- ..+-+-. .+ .+..++. . -.|+|+.+ ..-+++|+|
T Consensus 486 ~i~~~~~~~~~~~~Gi~~----edIi-~DP~-i~~v~~g--~~-e~n~~~~-----~-~le~i~~ik~~~pg~~~~~GlS 550 (1178)
T TIGR02082 486 EICKRAYNILTEKVGFPP----EDII-FDPN-ILTIATG--IE-EHRRYAI-----N-FIEAIRWIKEELPDAKISGGVS 550 (1178)
T ss_pred HHHHHHHHHHHHHcCCCH----HHEE-EeCC-ccccccC--ch-HHHHHHH-----H-HHHHHHHHHHhCCCCceEEEec
Confidence 388888887775579974 5666 7772 2221111 11 1112222 2 33666766 456899999
Q ss_pred CCCCCCC-----HHHHHH----HHccCCCCceEEecCCCCCCC
Q 007703 420 GVGRTFT-----KEVIEA----MASFNEVKPLILALSNPTSQS 453 (592)
Q Consensus 420 ~~~g~Ft-----~evv~~----Ma~~~e~rPIIFaLSNPt~~a 453 (592)
...=-|. .+++.. ||- . .=.=+|+.||....
T Consensus 551 N~SFglp~~~~~R~~ln~~FL~~a~--~-~Gld~aIvnp~~~~ 590 (1178)
T TIGR02082 551 NVSFSFRGNPAAREAMHSVFLYHAI--R-AGMDMGIVNAGKIL 590 (1178)
T ss_pred ccccCCCCCchHHHHHHHHHHHHHH--H-cCCchhhcChhhhh
Confidence 9875563 343322 111 1 33446777887543
No 355
>PRK07045 putative monooxygenase; Reviewed
Probab=47.04 E-value=24 Score=37.40 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=18.4
Q ss_pred ceEEEeCcChHHHHHHHHHHH
Q 007703 332 HRFLFLGAGEAGTGIAELIAL 352 (592)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~ 352 (592)
-+|+|+|||.||+..|-.|.+
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~ 26 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGA 26 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHh
Confidence 479999999999999988765
No 356
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=46.97 E-value=67 Score=33.95 Aligned_cols=35 Identities=17% Similarity=0.151 Sum_probs=22.1
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcc
Q 007703 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (592)
Q Consensus 329 l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~ 374 (592)
-.+++++|.|+|+.|.-.+.+. +..|. ++++.+|+
T Consensus 190 ~~g~~VlV~G~G~vG~~a~~la-----k~~G~------~~Vi~~~~ 224 (371)
T cd08281 190 RPGQSVAVVGLGGVGLSALLGA-----VAAGA------SQVVAVDL 224 (371)
T ss_pred CCCCEEEEECCCHHHHHHHHHH-----HHcCC------CcEEEEcC
Confidence 3578999999987665443322 22464 46777765
No 357
>PRK05993 short chain dehydrogenase; Provisional
Probab=46.93 E-value=41 Score=33.92 Aligned_cols=33 Identities=15% Similarity=0.184 Sum_probs=20.2
Q ss_pred cceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 331 EHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 331 d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
..+++|.|| |..|..+|+.+ .+ .| .++++++++
T Consensus 4 ~k~vlItGasggiG~~la~~l----~~-~G-------~~Vi~~~r~ 37 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARAL----QS-DG-------WRVFATCRK 37 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHH----HH-CC-------CEEEEEECC
Confidence 357999998 44444455544 33 36 368888764
No 358
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=46.87 E-value=67 Score=35.48 Aligned_cols=87 Identities=14% Similarity=0.102 Sum_probs=46.7
Q ss_pred HHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhch-----h
Q 007703 318 VVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKK-----P 392 (592)
Q Consensus 318 ll~Alr~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~-----~ 392 (592)
+..++.-....|++.|++++|.++-.-.++.++ ++.|+.. ..+ |.-.... +.....++ .
T Consensus 287 ~~~~l~~~~~~L~Gkrv~i~~g~~~~~~~~~~l-----~elGmev-------v~~---g~~~~~~-~~~~~~~~~~~~~~ 350 (421)
T cd01976 287 MEAVIAKYRPRLEGKTVMLYVGGLRPRHYIGAY-----EDLGMEV-------VGT---GYEFAHR-DDYERTEVIPKEGT 350 (421)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHH-----HHCCCEE-------EEE---EeecCCH-HHHhhHHhhcCCce
Confidence 455555666788999999998776555666533 3458732 111 0000000 00111110 0
Q ss_pred hccccCCCCCHHHHhcccCCcEEEeccC
Q 007703 393 WAHEHEPVNNLLDAVKVIKPTILIGSSG 420 (592)
Q Consensus 393 fA~~~~~~~~L~e~V~~vkPtvLIG~S~ 420 (592)
..-+..+...+++.++..+||++||-|.
T Consensus 351 ~i~~~~d~~e~~~~i~~~~pDliig~~~ 378 (421)
T cd01976 351 LLYDDVTHYELEEFVKRLKPDLIGSGIK 378 (421)
T ss_pred EEEcCCCHHHHHHHHHHhCCCEEEecCc
Confidence 0001122346888999999999998765
No 359
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=46.85 E-value=1.2e+02 Score=28.68 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=19.9
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHH
Q 007703 329 LAEHRFLFLGAGEAGTGIAELIALEIS 355 (592)
Q Consensus 329 l~d~riv~~GAGsAg~GIA~ll~~~~~ 355 (592)
.+..||.|+|.|..+. +|..+...+.
T Consensus 9 ~~a~rI~~~G~G~S~~-~A~~~a~~~~ 34 (154)
T TIGR00441 9 KAGGKVLICGNGGSAC-DAQHFAAELT 34 (154)
T ss_pred HCCCEEEEEeCcHHHH-HHHHHHHHhh
Confidence 3578999999999874 7777766543
No 360
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=46.69 E-value=60 Score=34.73 Aligned_cols=97 Identities=18% Similarity=0.106 Sum_probs=56.6
Q ss_pred ccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchh--chhhcc-ccCCCCCHHH
Q 007703 330 AEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF--KKPWAH-EHEPVNNLLD 405 (592)
Q Consensus 330 ~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~--k~~fA~-~~~~~~~L~e 405 (592)
+++||+|.|+ |-.|..+++.|.+ .| .+++.+|+..- ..+... ...+-. +..+..++..
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~-----~G-------~~V~~v~r~~~------~~~~~~~~~~~~~~~Dl~d~~~~~~ 81 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKA-----EG-------HYIIASDWKKN------EHMSEDMFCHEFHLVDLRVMENCLK 81 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHh-----CC-------CEEEEEEeccc------cccccccccceEEECCCCCHHHHHH
Confidence 4589999998 9999888888865 25 36888886431 001110 111111 1111223445
Q ss_pred HhcccCCcEEEeccCCCC--C---------------CCHHHHHHHHccCCCCceEEecC
Q 007703 406 AVKVIKPTILIGSSGVGR--T---------------FTKEVIEAMASFNEVKPLILALS 447 (592)
Q Consensus 406 ~V~~vkPtvLIG~S~~~g--~---------------Ft~evv~~Ma~~~e~rPIIFaLS 447 (592)
+++ ++|++|=+.+..+ . .|..+++++.+..- +.+||.=|
T Consensus 82 ~~~--~~D~Vih~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~v-k~~V~~SS 137 (370)
T PLN02695 82 VTK--GVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGV-KRFFYASS 137 (370)
T ss_pred HHh--CCCEEEEcccccCCccccccCchhhHHHHHHHHHHHHHHHHHhCC-CEEEEeCc
Confidence 554 5899998765431 1 23557777766655 78888654
No 361
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=46.62 E-value=23 Score=38.79 Aligned_cols=33 Identities=24% Similarity=0.273 Sum_probs=26.8
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCC
Q 007703 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (592)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 376 (592)
-.++|+|||+||+..|..+.+. | .++.++|++.
T Consensus 5 yDvvVIGaGpaG~~aA~~aa~~-----G-------~~V~liE~~~ 37 (462)
T PRK06416 5 YDVIVIGAGPGGYVAAIRAAQL-----G-------LKVAIVEKEK 37 (462)
T ss_pred ccEEEECCCHHHHHHHHHHHHC-----C-------CcEEEEeccc
Confidence 3699999999999999887652 5 5789999864
No 362
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=46.60 E-value=50 Score=32.32 Aligned_cols=36 Identities=25% Similarity=0.289 Sum_probs=23.1
Q ss_pred CcccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 328 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 328 ~l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
.++..+++|.|| |..|..+++.+++ .|. +++++++.
T Consensus 4 ~~~~~~vlItGasg~iG~~la~~l~~-----~G~-------~v~~~~r~ 40 (262)
T PRK13394 4 NLNGKTAVVTGAASGIGKEIALELAR-----AGA-------AVAIADLN 40 (262)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHH-----CCC-------eEEEEeCC
Confidence 356778999998 5555555555543 363 57777764
No 363
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=46.59 E-value=23 Score=36.39 Aligned_cols=34 Identities=26% Similarity=0.332 Sum_probs=26.8
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCC
Q 007703 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (592)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 376 (592)
+..++|+|||.||+..|-.+.. .|+ ++.++|++-
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~-----~G~-------~V~liEk~~ 58 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAK-----AGL-------KVAVFERKL 58 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHh-----CCC-------eEEEEecCC
Confidence 5689999999999998887654 363 688888764
No 364
>PRK06753 hypothetical protein; Provisional
Probab=46.58 E-value=24 Score=36.95 Aligned_cols=20 Identities=30% Similarity=0.489 Sum_probs=17.6
Q ss_pred eEEEeCcChHHHHHHHHHHH
Q 007703 333 RFLFLGAGEAGTGIAELIAL 352 (592)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~ 352 (592)
+|+|+|||.||+..|..|.+
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~ 21 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQE 21 (373)
T ss_pred EEEEECCCHHHHHHHHHHHh
Confidence 79999999999999888765
No 365
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=46.54 E-value=76 Score=30.93 Aligned_cols=144 Identities=16% Similarity=0.213 Sum_probs=87.2
Q ss_pred hhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecC--ceecccCCCCCC--ccccchhhHHHHHHhcCCCCCceeeE
Q 007703 153 IFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDG--ERILGLGDLGCQ--GMGIPVGKLALYTALGGIRPSACLPI 228 (592)
Q Consensus 153 i~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG--~rILGLGDlG~~--GmgI~iGKl~LYta~gGI~P~~~LPI 228 (592)
+-+++.|+-++..|.....+.++.+-..+|.|+.+-.. ..-..+--.|.+ .+|-..|+..+-....+ ..|
T Consensus 52 i~~~~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~d~~~~~~~~~~~~v~~d~~~~G~~~a~~l~~~~~~~------~~v 125 (257)
T PF13407_consen 52 ISQGVDGIIVSPVDPDSLAPFLEKAKAAGIPVVTVDSDEAPDSPRAAYVGTDNYEAGKLAAEYLAEKLGAK------GKV 125 (257)
T ss_dssp HHTTESEEEEESSSTTTTHHHHHHHHHTTSEEEEESSTHHTTSTSSEEEEE-HHHHHHHHHHHHHHHHTTT------EEE
T ss_pred HHhcCCEEEecCCCHHHHHHHHHHHhhcCceEEEEeccccccccceeeeeccHHHHHHHHHHHHHHHhccC------ceE
Confidence 45679999999999988889998888888988887555 111122223332 35666676666666554 445
Q ss_pred EeecCCCchhcccCcccccccccCCChhhhHHHHHHHHHHHHHhcCCCe-eee---eecCCCchHHHHHHHHcCCC---c
Q 007703 229 TVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKV-LIQ---FEDFANHNAFELLAKYGTTH---L 301 (592)
Q Consensus 229 ~LDvGTnNe~LL~Dp~YlG~r~~R~~geeY~~~idefv~av~~~fGp~~-lIq---fEDf~~~~Af~lL~ryr~~~---~ 301 (592)
++=.|..+ .....+.++-|.+++++ ++ ++ ++. +.++....+.+.++++-... .
T Consensus 126 ~~~~~~~~------------------~~~~~~r~~g~~~~l~~-~~-~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~ 185 (257)
T PF13407_consen 126 LILSGSPG------------------NPNTQERLEGFRDALKE-YP-GVEIVDEYEYTDWDPEDARQAIENLLQANPVDA 185 (257)
T ss_dssp EEEESSTT------------------SHHHHHHHHHHHHHHHH-CT-TEEEEEEEEECTTSHHHHHHHHHHHHHHTTEEE
T ss_pred EeccCCCC------------------chHHHHHHHHHHHHHhh-cc-eeeeeeeeeccCCCHHHHHHHHHHhhhcCCceE
Confidence 54444321 12333557888888888 64 43 232 23677777876655553222 2
Q ss_pred eeccCCcchHHHHHHHHHHHHHHhCC
Q 007703 302 VFNDDIQGTASVVLAGVVAALKLIGG 327 (592)
Q Consensus 302 ~FNDDiQGTaaV~LAgll~Alr~~g~ 327 (592)
+|. +....+-|++.|++..|+
T Consensus 186 i~~-----~~~~~~~g~~~al~~~g~ 206 (257)
T PF13407_consen 186 IIA-----CNDGMALGAAQALQQAGR 206 (257)
T ss_dssp EEE-----SSHHHHHHHHHHHHHTTC
T ss_pred EEe-----CCChHHHHHHHHHHHcCC
Confidence 222 223344477888888887
No 366
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=46.40 E-value=35 Score=38.97 Aligned_cols=34 Identities=21% Similarity=0.246 Sum_probs=26.1
Q ss_pred HHHHHHhCCCcccceEEEeCcChHHHHHHHHHHH
Q 007703 319 VAALKLIGGTLAEHRFLFLGAGEAGTGIAELIAL 352 (592)
Q Consensus 319 l~Alr~~g~~l~d~riv~~GAGsAg~GIA~ll~~ 352 (592)
+.++.-...-|...|+.++|-..-.+|+++.|.+
T Consensus 351 ~dam~d~~~~l~GKrvaI~gdpd~~~~l~~fL~E 384 (515)
T TIGR01286 351 VDAMTDSHAWLHGKRFAIYGDPDFVMGLVRFVLE 384 (515)
T ss_pred HHHHHHHHHHhcCceEEEECCHHHHHHHHHHHHH
Confidence 3344334456788999999999999999999874
No 367
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=46.35 E-value=23 Score=39.87 Aligned_cols=33 Identities=27% Similarity=0.381 Sum_probs=26.6
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCC
Q 007703 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (592)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 376 (592)
-.|||+|+|.+|++||..+.. .|+ ++.|+|+..
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~-----rGl-------~V~LvEk~d 39 (508)
T PRK12266 7 YDLLVIGGGINGAGIARDAAG-----RGL-------SVLLCEQDD 39 (508)
T ss_pred CCEEEECcCHHHHHHHHHHHH-----CCC-------eEEEEecCC
Confidence 469999999999999988765 375 578888763
No 368
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=46.32 E-value=23 Score=39.35 Aligned_cols=21 Identities=38% Similarity=0.515 Sum_probs=18.3
Q ss_pred ceEEEeCcChHHHHHHHHHHH
Q 007703 332 HRFLFLGAGEAGTGIAELIAL 352 (592)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~ 352 (592)
-.|+|+|||.||...|..+..
T Consensus 40 ~DViIVGaGPAG~~aA~~LA~ 60 (450)
T PLN00093 40 LRVAVIGGGPAGACAAETLAK 60 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHh
Confidence 479999999999999987764
No 369
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=46.32 E-value=26 Score=36.14 Aligned_cols=32 Identities=38% Similarity=0.605 Sum_probs=26.3
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
.+|.|+|+|..|.+||..++.+ | .+++++|.+
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~-----G-------~~V~~~d~~ 36 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAA-----G-------MDVWLLDSD 36 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhc-----C-------CeEEEEeCC
Confidence 5799999999999999988753 5 468888863
No 370
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=46.05 E-value=25 Score=34.86 Aligned_cols=33 Identities=27% Similarity=0.433 Sum_probs=25.0
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCc
Q 007703 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (592)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GL 377 (592)
.|+|+|||.||+..|-.+.+ .|+ ++.++|++..
T Consensus 2 dv~IiGaG~aGl~~A~~l~~-----~g~-------~v~vie~~~~ 34 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLAD-----KGL-------RVLLLEKKSF 34 (295)
T ss_pred CEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEeccCC
Confidence 48999999999999877753 364 5778887643
No 371
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=45.92 E-value=16 Score=39.72 Aligned_cols=36 Identities=19% Similarity=0.361 Sum_probs=26.1
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 328 ~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
..+..||||+|+|.||+..|+.|. + . .-+|.++|.+
T Consensus 7 ~~~~~~vVIvGgG~aGl~~a~~L~----~-~-------~~~ItlI~~~ 42 (424)
T PTZ00318 7 RLKKPNVVVLGTGWAGAYFVRNLD----P-K-------KYNITVISPR 42 (424)
T ss_pred CCCCCeEEEECCCHHHHHHHHHhC----c-C-------CCeEEEEcCC
Confidence 345679999999999998876552 1 1 2368888864
No 372
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=45.89 E-value=95 Score=30.62 Aligned_cols=92 Identities=16% Similarity=0.174 Sum_probs=46.3
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhccccCCCCCHHHHhc
Q 007703 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVK 408 (592)
Q Consensus 329 l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~ 408 (592)
.++.||.|+|.|..+ -+|..+...|..+.++.. --.+++..+....+.. -. +-..+...|++ ...+.
T Consensus 42 ~~~~rI~i~G~G~S~-~~A~~~a~~l~~~~~~~r--~g~~~~~~~d~~~~~~-~~-~d~~~~~~~~~-------~~~~~- 108 (192)
T PRK00414 42 KAGGKVLSCGNGGSH-CDAMHFAEELTGRYRENR--PGYPAIAISDVSHLSC-VS-NDFGYDYVFSR-------YVEAV- 108 (192)
T ss_pred HCCCEEEEEeCcHHH-HHHHHHHHHhcccccCCC--CCceEEecCcHHHHhh-hh-ccCCHHHHHHH-------HHHHh-
Confidence 457899999999987 667777665542112110 0112222211111110 00 00111112221 11111
Q ss_pred ccCCcEEEeccCCCCCCCHHHHHHHHc
Q 007703 409 VIKPTILIGSSGVGRTFTKEVIEAMAS 435 (592)
Q Consensus 409 ~vkPtvLIG~S~~~g~Ft~evv~~Ma~ 435 (592)
.-+-|++|++|..|. |+++++.+..
T Consensus 109 ~~~~Dv~I~iS~SG~--t~~~i~~~~~ 133 (192)
T PRK00414 109 GREGDVLLGISTSGN--SGNIIKAIEA 133 (192)
T ss_pred CCCCCEEEEEeCCCC--CHHHHHHHHH
Confidence 125699999999875 9999998753
No 373
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=45.85 E-value=84 Score=31.11 Aligned_cols=76 Identities=18% Similarity=0.207 Sum_probs=40.5
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhch-hhccccCCCCCHHHH
Q 007703 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKK-PWAHEHEPVNNLLDA 406 (592)
Q Consensus 328 ~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~-~fA~~~~~~~~L~e~ 406 (592)
.|++.+++|.||++ ||...++..+.+ .| .+++++|++.- .+...+. .+.-|-....++.++
T Consensus 6 ~l~~k~vlItG~s~---gIG~~la~~l~~-~G-------~~v~~~~~~~~-------~~~~~~~~~~~~D~~~~~~~~~~ 67 (266)
T PRK06171 6 NLQGKIIIVTGGSS---GIGLAIVKELLA-NG-------ANVVNADIHGG-------DGQHENYQFVPTDVSSAEEVNHT 67 (266)
T ss_pred cCCCCEEEEeCCCC---hHHHHHHHHHHH-CC-------CEEEEEeCCcc-------ccccCceEEEEccCCCHHHHHHH
Confidence 46788999999753 555555555554 36 36777776421 1111111 111122222345555
Q ss_pred hccc-----CCcEEEeccCC
Q 007703 407 VKVI-----KPTILIGSSGV 421 (592)
Q Consensus 407 V~~v-----kPtvLIG~S~~ 421 (592)
++.+ ++|+||=+.+.
T Consensus 68 ~~~~~~~~g~id~li~~Ag~ 87 (266)
T PRK06171 68 VAEIIEKFGRIDGLVNNAGI 87 (266)
T ss_pred HHHHHHHcCCCCEEEECCcc
Confidence 5543 67999976654
No 374
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=45.68 E-value=33 Score=38.00 Aligned_cols=56 Identities=21% Similarity=0.294 Sum_probs=37.0
Q ss_pred HHHcCCCceeccCCcchHHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEc
Q 007703 294 AKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVD 373 (592)
Q Consensus 294 ~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD 373 (592)
++|....+.+.|=..||+ .++++++++|.||.+ ||...++..+.+ .|. ++.++|
T Consensus 156 ~~~~~~~~~~~d~~~~ta---------------~sl~gK~VLITGASg---GIG~aLA~~La~-~G~-------~Vi~l~ 209 (406)
T PRK07424 156 NAYYCGTFTLVDKLMGTA---------------LSLKGKTVAVTGASG---TLGQALLKELHQ-QGA-------KVVALT 209 (406)
T ss_pred cceeeeeEEEeehhcCcc---------------cCCCCCEEEEeCCCC---HHHHHHHHHHHH-CCC-------EEEEEe
Confidence 356677889999888888 256778999999733 344444444443 353 566776
Q ss_pred cC
Q 007703 374 SK 375 (592)
Q Consensus 374 ~~ 375 (592)
++
T Consensus 210 r~ 211 (406)
T PRK07424 210 SN 211 (406)
T ss_pred CC
Confidence 54
No 375
>PRK09186 flagellin modification protein A; Provisional
Probab=45.47 E-value=47 Score=32.42 Aligned_cols=35 Identities=23% Similarity=0.351 Sum_probs=20.9
Q ss_pred cccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 329 LAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 329 l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
+++.+++|.||+ ..|..+|+.+ .+ .|. ++.+++++
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l----~~-~g~-------~v~~~~r~ 37 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAI----LE-AGG-------IVIAADID 37 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHH----HH-CCC-------EEEEEecC
Confidence 467899999984 3444444444 33 353 46666653
No 376
>PRK06841 short chain dehydrogenase; Provisional
Probab=45.45 E-value=38 Score=33.13 Aligned_cols=36 Identities=31% Similarity=0.455 Sum_probs=23.4
Q ss_pred CcccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 328 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 328 ~l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
++.+.+++|.|| |..|..+|+.++ + .|. ++++++++
T Consensus 12 ~~~~k~vlItGas~~IG~~la~~l~----~-~G~-------~Vi~~~r~ 48 (255)
T PRK06841 12 DLSGKVAVVTGGASGIGHAIAELFA----A-KGA-------RVALLDRS 48 (255)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHH----H-CCC-------EEEEEeCC
Confidence 467889999998 445555555543 3 363 57777764
No 377
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=45.26 E-value=26 Score=38.17 Aligned_cols=33 Identities=30% Similarity=0.509 Sum_probs=27.1
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCC
Q 007703 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (592)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 376 (592)
-.+||+|||+||+..|..+.+ .| .++.++|++.
T Consensus 4 ~dvvVIG~GpaG~~aA~~l~~-----~g-------~~V~liE~~~ 36 (438)
T PRK07251 4 YDLIVIGFGKAGKTLAAKLAS-----AG-------KKVALVEESK 36 (438)
T ss_pred cCEEEECCCHHHHHHHHHHHh-----CC-------CEEEEEecCC
Confidence 469999999999999987765 36 5799999864
No 378
>PLN02676 polyamine oxidase
Probab=45.12 E-value=55 Score=36.76 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=20.0
Q ss_pred ccceEEEeCcChHHHHHHHHHHH
Q 007703 330 AEHRFLFLGAGEAGTGIAELIAL 352 (592)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~ 352 (592)
...+++|+|||.+|+..|..|.+
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~ 47 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSE 47 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHH
Confidence 35579999999999999998875
No 379
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=45.10 E-value=27 Score=38.41 Aligned_cols=35 Identities=20% Similarity=0.351 Sum_probs=27.4
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 329 l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
-...+|+|+|+|.||+..|..+.. .| .++.++|+.
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~-----~g-------~~V~lie~~ 172 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLAR-----KG-------YDVTIFEAR 172 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHh-----CC-------CeEEEEccC
Confidence 345799999999999998887754 25 468888875
No 380
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=45.02 E-value=26 Score=36.54 Aligned_cols=34 Identities=15% Similarity=0.202 Sum_probs=27.0
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCC
Q 007703 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (592)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 376 (592)
...|+|+|||-+|+.+|-.|.+. | .++.++|+..
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~-----g-------~~V~lie~~~ 36 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARR-----G-------LRVLGLDRFM 36 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeccc
Confidence 34699999999999999877652 5 4688898764
No 381
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=44.78 E-value=69 Score=34.91 Aligned_cols=34 Identities=18% Similarity=0.199 Sum_probs=26.6
Q ss_pred HHHHHHhCCCcccceEEEeCcChHHHHHHHHHHH
Q 007703 319 VAALKLIGGTLAEHRFLFLGAGEAGTGIAELIAL 352 (592)
Q Consensus 319 l~Alr~~g~~l~d~riv~~GAGsAg~GIA~ll~~ 352 (592)
.-++......|.+.|++|+|-+.-..++++.+.+
T Consensus 264 ~~~l~~~~~~l~Gkrv~i~g~~~~~~~la~~L~e 297 (396)
T cd01979 264 WRALEPYLDLLRGKSIFFMGDNLLEIPLARFLTR 297 (396)
T ss_pred HHHHHHHHHhhcCCEEEEECCchHHHHHHHHHHH
Confidence 4445555566778899999999889999998876
No 382
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=44.71 E-value=2.7e+02 Score=33.08 Aligned_cols=104 Identities=16% Similarity=0.039 Sum_probs=55.2
Q ss_pred cccCCcEEEeccCCCCCCCHHHHHHHHccCCCCceEEecCCCCCC--------CCCCHHHHhccccCcEEEecCCCCCcc
Q 007703 408 KVIKPTILIGSSGVGRTFTKEVIEAMASFNEVKPLILALSNPTSQ--------SECTAEEAYTWSKGRAIFASGSPFDPF 479 (592)
Q Consensus 408 ~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~e~rPIIFaLSNPt~~--------aEct~e~A~~wt~G~aifAsGSPF~pV 479 (592)
+.++|+++|..++.+ +.-.-+.....+-+ |=|.+=.-||... .+-|-++..++... |+..-=..||
T Consensus 413 ~~~~~~~ilasnTS~--l~i~~la~~~~~p~-r~ig~Hff~P~~~~~lVEvv~g~~Ts~~~~~~~~~---~~~~~gk~pv 486 (708)
T PRK11154 413 QNCAPHTIFASNTSS--LPIGQIAAAAARPE-QVIGLHYFSPVEKMPLVEVIPHAKTSAETIATTVA---LAKKQGKTPI 486 (708)
T ss_pred hhCCCCcEEEECCCC--CCHHHHHHhcCccc-ceEEEecCCccccCceEEEECCCCCCHHHHHHHHH---HHHHcCCceE
Confidence 456899999877743 44444443334445 6688888898752 33444444332210 1111113355
Q ss_pred eeCCeeeCccCCcccccchhhhHHHHHhCCcccCHHHHHHHH
Q 007703 480 EYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAAS 521 (592)
Q Consensus 480 ~~~G~~~~p~Q~NN~yiFPGiglG~~~s~a~~Itd~m~~aAA 521 (592)
.. ...||..=|-..+|-+--++.+...- ++.+-+-.|.
T Consensus 487 ~v---~d~pGfi~nRl~~~~~~EA~~lv~eG-v~~~dID~a~ 524 (708)
T PRK11154 487 VV---RDGAGFYVNRILAPYINEAARLLLEG-EPIEHIDAAL 524 (708)
T ss_pred EE---eccCcHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH
Confidence 44 24667777777777665555554432 3555454443
No 383
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=44.59 E-value=24 Score=41.71 Aligned_cols=105 Identities=17% Similarity=0.117 Sum_probs=58.2
Q ss_pred hcccCCcEEEeccCCCCCCCHHHHHHHHccCCCCceEEecCCCCC--------CCCCCHHHHhccccCcEEEecCCCCCc
Q 007703 407 VKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVKPLILALSNPTS--------QSECTAEEAYTWSKGRAIFASGSPFDP 478 (592)
Q Consensus 407 V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~e~rPIIFaLSNPt~--------~aEct~e~A~~wt~G~aifAsGSPF~p 478 (592)
=+.++|+++|..++. .+.-.-|....++-+ |=|.+=..||.. ..+-|.++.+++... |+..-=..|
T Consensus 415 ~~~~~~~~ilasNTS--sl~i~~la~~~~~p~-r~~g~Hff~P~~~~~lVEvv~g~~T~~~~~~~~~~---~~~~lgk~p 488 (715)
T PRK11730 415 EQKVREDTILASNTS--TISISLLAKALKRPE-NFCGMHFFNPVHRMPLVEVIRGEKTSDETIATVVA---YASKMGKTP 488 (715)
T ss_pred HhhCCCCcEEEEcCC--CCCHHHHHhhcCCCc-cEEEEecCCcccccceEEeeCCCCCCHHHHHHHHH---HHHHhCCce
Confidence 345689999987774 354444444334444 558888999863 344455444443211 111112445
Q ss_pred ceeCCeeeCccCCcccccchhhhHHHHHhCCcccCHHHHHHHH
Q 007703 479 FEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAAS 521 (592)
Q Consensus 479 V~~~G~~~~p~Q~NN~yiFPGiglG~~~s~a~~Itd~m~~aAA 521 (592)
|..+ ..||-.=|-..+|-+--++.+...- .+.+.+-+|.
T Consensus 489 v~v~---d~pGfv~nRi~~~~~~ea~~lv~~G-a~~e~ID~a~ 527 (715)
T PRK11730 489 IVVN---DCPGFFVNRVLFPYFAGFSQLLRDG-ADFRQIDKVM 527 (715)
T ss_pred EEec---CcCchhHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH
Confidence 5552 5678777777777665554443333 5555555543
No 384
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=44.49 E-value=27 Score=37.38 Aligned_cols=33 Identities=24% Similarity=0.348 Sum_probs=25.9
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
...|+|+|||.||+-.|-+|.. .|+ ++.++++.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~-----~G~-------~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALAR-----AGL-------DVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHh-----CCC-------cEEEEccC
Confidence 3579999999999998887765 374 56777775
No 385
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=44.49 E-value=24 Score=37.06 Aligned_cols=32 Identities=19% Similarity=0.427 Sum_probs=24.7
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
..|+|+|||.||+..|-.|.+ .|+ ++.++|++
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~-----~G~-------~v~v~E~~ 37 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQ-----SGL-------RVALLAPR 37 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHh-----CCC-------eEEEEecC
Confidence 469999999999999977754 364 57777765
No 386
>PF04320 DUF469: Protein with unknown function (DUF469); InterPro: IPR007416 This entry represents a family of uncharacterised proteins which are predicted to function as phosphotransferases.
Probab=44.47 E-value=20 Score=32.81 Aligned_cols=32 Identities=19% Similarity=0.489 Sum_probs=25.0
Q ss_pred CChhhhHHHHHHHHHHHHH---hcCCCeeeeeecC
Q 007703 253 ATGQEYAELLDEFMSAVKQ---NYGEKVLIQFEDF 284 (592)
Q Consensus 253 ~~geeY~~~idefv~av~~---~fGp~~lIqfEDf 284 (592)
.+.++||.|+|+|+..|.+ .||....-+||-|
T Consensus 27 ~~~e~~D~~~D~fId~Ie~~gL~~~Ggg~~~~eG~ 61 (101)
T PF04320_consen 27 TSEEQIDAFVDAFIDVIEPNGLAFGGGGYEQWEGF 61 (101)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEecCCccCEeEE
Confidence 5678999999999998888 4666556666655
No 387
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=44.24 E-value=1.6e+02 Score=32.09 Aligned_cols=138 Identities=13% Similarity=0.154 Sum_probs=83.7
Q ss_pred HHHHHHHHHhcCCCeeeeeecCCCchHHHHHHHHcCCCceecc-CCcchHHHHHHHHHHHHHHhC-CCcccceEEEeCcC
Q 007703 263 DEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFND-DIQGTASVVLAGVVAALKLIG-GTLAEHRFLFLGAG 340 (592)
Q Consensus 263 defv~av~~~fGp~~lIqfEDf~~~~Af~lL~ryr~~~~~FND-DiQGTaaV~LAgll~Alr~~g-~~l~d~riv~~GAG 340 (592)
.+.+.. -.+| .++++ +-.+. +.+.+.+.+| .++|++|- |-..--.=+||=++.-.+..| +++++.+|.++|-+
T Consensus 91 ~Dtarv-ls~y-~D~Iv-~R~~~-~~~~~~~a~~-~~vPVINa~~~~~HPtQaLaDl~Ti~e~~g~~~l~g~~ia~vGD~ 165 (336)
T PRK03515 91 KDTARV-LGRM-YDGIQ-YRGYG-QEIVETLAEY-AGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLAYAGDA 165 (336)
T ss_pred HHHHHH-HHHh-CcEEE-EEeCC-hHHHHHHHHh-CCCCEEECCCCCCChHHHHHHHHHHHHHhCCCCcCCCEEEEeCCC
Confidence 334433 3456 45444 33333 3344444454 47999993 334455667888888777776 47999999999986
Q ss_pred hHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhccc-cC---CCCCHHHHhcccCCcEEE
Q 007703 341 EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HE---PVNNLLDAVKVIKPTILI 416 (592)
Q Consensus 341 sAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~-~~---~~~~L~e~V~~vkPtvLI 416 (592)
.- ++++-++.++.+ .|+ ++.++-.+|+.-.. + +-..-+.+++. +. -..++.|+++. .||+.
T Consensus 166 ~~--~v~~Sl~~~~~~-~g~-------~v~~~~P~~~~~~~--~-~~~~~~~~~~~~g~~i~~~~d~~ea~~~--aDvvy 230 (336)
T PRK03515 166 RN--NMGNSLLEAAAL-TGL-------DLRLVAPKACWPEA--A-LVTECRALAQKNGGNITLTEDIAEGVKG--ADFIY 230 (336)
T ss_pred cC--cHHHHHHHHHHH-cCC-------EEEEECCchhcCcH--H-HHHHHHHHHHHcCCeEEEEcCHHHHhCC--CCEEE
Confidence 33 477777776665 474 68888887773321 1 11111233332 11 23689999997 99999
Q ss_pred eccC
Q 007703 417 GSSG 420 (592)
Q Consensus 417 G~S~ 420 (592)
-.+=
T Consensus 231 td~W 234 (336)
T PRK03515 231 TDVW 234 (336)
T ss_pred ecCc
Confidence 7643
No 388
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=44.13 E-value=34 Score=35.52 Aligned_cols=37 Identities=27% Similarity=0.284 Sum_probs=25.6
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcc
Q 007703 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 378 (592)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv 378 (592)
.+--++|+|||+||+..|..|.+. |+ ++.+++++=-+
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~-----g~-------kV~v~E~~~~~ 52 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKA-----GL-------KVAVIERKLSP 52 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHH-----TS--------EEEEESSSS-
T ss_pred ccCCEEEECCChhHHHHHHHHHHC-----CC-------eEEEEecCCCC
Confidence 356789999999999999877764 64 68888876333
No 389
>PLN02463 lycopene beta cyclase
Probab=44.13 E-value=25 Score=39.18 Aligned_cols=32 Identities=22% Similarity=0.538 Sum_probs=25.1
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
-.|+|+|||.||+.+|..+.+ .|+ ++.++|+.
T Consensus 29 ~DVvIVGaGpAGLalA~~La~-----~Gl-------~V~liE~~ 60 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVSE-----AGL-------SVCCIDPS 60 (447)
T ss_pred ceEEEECCCHHHHHHHHHHHH-----CCC-------eEEEeccC
Confidence 479999999999999987754 364 57777764
No 390
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=44.12 E-value=34 Score=36.11 Aligned_cols=35 Identities=23% Similarity=0.318 Sum_probs=27.9
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 329 l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
-..++|+|+|+|.||+..|..+.+ .| .++.++|+.
T Consensus 16 ~~~~~VvIIG~G~aGl~aA~~l~~-----~g-------~~v~lie~~ 50 (352)
T PRK12770 16 PTGKKVAIIGAGPAGLAAAGYLAC-----LG-------YEVHVYDKL 50 (352)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHH-----CC-------CcEEEEeCC
Confidence 345799999999999999887764 25 468888875
No 391
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=44.06 E-value=23 Score=34.85 Aligned_cols=79 Identities=16% Similarity=0.127 Sum_probs=40.2
Q ss_pred CcccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchh-c---hhhccccCCCCC
Q 007703 328 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF-K---KPWAHEHEPVNN 402 (592)
Q Consensus 328 ~l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~-k---~~fA~~~~~~~~ 402 (592)
.+.+.+++|.|| |.-|..||+.+ .+ .| .++.++|++. .+.+.+... . ..+.-|..+..+
T Consensus 3 ~l~~~~vlItGas~~iG~~ia~~l----~~-~G-------~~v~~~~r~~----~~~~~~~~~~~~~~~~~~~D~~~~~~ 66 (257)
T PRK07067 3 RLQGKVALLTGAASGIGEAVAERY----LA-EG-------ARVVIADIKP----ARARLAALEIGPAAIAVSLDVTRQDS 66 (257)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHH----HH-cC-------CEEEEEcCCH----HHHHHHHHHhCCceEEEEccCCCHHH
Confidence 467889999997 44444444444 43 36 3577887641 110001000 0 011112222235
Q ss_pred HHHHhccc-----CCcEEEeccCCC
Q 007703 403 LLDAVKVI-----KPTILIGSSGVG 422 (592)
Q Consensus 403 L~e~V~~v-----kPtvLIG~S~~~ 422 (592)
+.++++.+ ++|+||=+.+..
T Consensus 67 ~~~~~~~~~~~~~~id~li~~ag~~ 91 (257)
T PRK07067 67 IDRIVAAAVERFGGIDILFNNAALF 91 (257)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCcC
Confidence 56666654 689999776643
No 392
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=44.03 E-value=26 Score=43.23 Aligned_cols=35 Identities=20% Similarity=0.355 Sum_probs=28.4
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 329 l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
-+.+||+|+|||.||+..|..|.. .| .++.++|++
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar-----~G-------~~VtV~Ek~ 571 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLAR-----AG-------HPVTVFERE 571 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHH-----cC-------CeEEEEecc
Confidence 457899999999999999998865 26 357788865
No 393
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=44.02 E-value=30 Score=36.41 Aligned_cols=36 Identities=17% Similarity=0.292 Sum_probs=25.9
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
..+|+|+|||.||+..|-+|...- +.|+ ++.++|++
T Consensus 3 ~~dv~IvGaG~aGl~~A~~L~~~~--~~G~-------~v~v~E~~ 38 (395)
T PRK05732 3 RMDVIIVGGGMAGATLALALSRLS--HGGL-------PVALIEAF 38 (395)
T ss_pred cCCEEEECcCHHHHHHHHHhhhcc--cCCC-------EEEEEeCC
Confidence 457999999999999988876520 0154 57777773
No 394
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=43.86 E-value=15 Score=40.12 Aligned_cols=47 Identities=19% Similarity=0.231 Sum_probs=30.7
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHh---cCCChhhhcC----cEEEEccCCcc
Q 007703 332 HRFLFLGAGEAGTGIAELIALEISKQ---TKAPVEETRK----KICLVDSKGLI 378 (592)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~---~G~s~eeA~~----~i~lvD~~GLv 378 (592)
++|+|+|||-||+..|..|.++-... .-++.=||+. +++-+...|..
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~g~~ 55 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEKDFI 55 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeCCEE
Confidence 47999999999999999987642100 0256666665 35555445543
No 395
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=43.74 E-value=28 Score=36.40 Aligned_cols=33 Identities=30% Similarity=0.306 Sum_probs=26.0
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCc
Q 007703 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (592)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GL 377 (592)
.|+|+|||.+|+.+|-.|.+ .| .++.++|+...
T Consensus 2 dvvIIGaGi~G~s~A~~La~-----~g-------~~V~l~e~~~~ 34 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAK-----HG-------KKTLLLEQFDL 34 (380)
T ss_pred cEEEECCCHHHHHHHHHHHH-----CC-------CeEEEEeccCC
Confidence 58999999999999987764 25 35888888654
No 396
>PRK12831 putative oxidoreductase; Provisional
Probab=43.74 E-value=29 Score=38.62 Aligned_cols=35 Identities=17% Similarity=0.233 Sum_probs=27.8
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 329 l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
-...+|+|+|||.||+..|..+... | .++.++|+.
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~-----G-------~~V~v~e~~ 172 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKM-----G-------YDVTIFEAL 172 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhC-----C-------CeEEEEecC
Confidence 3567999999999999999888752 5 367888863
No 397
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=43.70 E-value=32 Score=40.58 Aligned_cols=36 Identities=17% Similarity=0.273 Sum_probs=29.1
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 328 ~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
+-.+.+|+|+|||.||+..|..+... | .++.++|+.
T Consensus 428 ~~~~~~V~IIGaGpAGl~aA~~l~~~-----G-------~~V~v~e~~ 463 (752)
T PRK12778 428 EKNGKKVAVIGSGPAGLSFAGDLAKR-----G-------YDVTVFEAL 463 (752)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHC-----C-------CeEEEEecC
Confidence 34678999999999999999988652 6 368888874
No 398
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=43.64 E-value=1.1e+02 Score=36.12 Aligned_cols=64 Identities=17% Similarity=0.205 Sum_probs=41.4
Q ss_pred HHHHHHcCCCceeccCCcchHHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEE
Q 007703 291 ELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKIC 370 (592)
Q Consensus 291 ~lL~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~ 370 (592)
.+++||..++=-|+-... .++.|-. ..++.||+++|.|.-|.-+.-.|+. .|+ .+|.
T Consensus 101 a~lERYaaqI~F~~~fs~----------s~~~rF~--~qR~akVlVlG~Gg~~s~lv~sL~~-----sG~------~~I~ 157 (637)
T TIGR03693 101 ALLDRYAAQIEFIEADAD----------SGALKFE--LSRNAKILAAGSGDFLTKLVRSLID-----SGF------PRFH 157 (637)
T ss_pred HHHHHHHHHHHHHHHhcc----------Cchhhhh--hhhcccEEEEecCchHHHHHHHHHh-----cCC------CcEE
Confidence 478999877655543321 1122221 2289999999999887776666554 487 7888
Q ss_pred EEccCCc
Q 007703 371 LVDSKGL 377 (592)
Q Consensus 371 lvD~~GL 377 (592)
.+|.+=.
T Consensus 158 ~vd~D~v 164 (637)
T TIGR03693 158 AIVTDAE 164 (637)
T ss_pred EEecccc
Confidence 8876544
No 399
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=43.31 E-value=19 Score=31.71 Aligned_cols=37 Identities=22% Similarity=0.342 Sum_probs=26.6
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCC
Q 007703 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (592)
Q Consensus 328 ~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 376 (592)
+|++.++||+|+|..|.-=+++|+++ | -++.++...-
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~-----g-------A~v~vis~~~ 40 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEA-----G-------AKVTVISPEI 40 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCC-----T-------BEEEEEESSE
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhC-----C-------CEEEEECCch
Confidence 57899999999999998777777642 4 4677777653
No 400
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=43.18 E-value=26 Score=38.29 Aligned_cols=21 Identities=33% Similarity=0.422 Sum_probs=18.3
Q ss_pred ceEEEeCcChHHHHHHHHHHH
Q 007703 332 HRFLFLGAGEAGTGIAELIAL 352 (592)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~ 352 (592)
-.|+|+|||.||...|-.+.+
T Consensus 6 ~DViIVGaGpAG~~aA~~La~ 26 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLAR 26 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHh
Confidence 479999999999999988764
No 401
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=43.04 E-value=43 Score=35.79 Aligned_cols=97 Identities=19% Similarity=0.183 Sum_probs=50.2
Q ss_pred cCCcchHHHHHHHHHHH-HHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCc
Q 007703 305 DDIQGTASVVLAGVVAA-LKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRK 383 (592)
Q Consensus 305 DDiQGTaaV~LAgll~A-lr~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~ 383 (592)
|+..+.-+=-+|.-+.+ ....+.+..+ +++|+|||+.|+..+.+. +..|. ++|+++|.. ..|
T Consensus 143 ~~~~aal~epla~~~~~~a~~~~~~~~~-~V~V~GaGpIGLla~~~a-----~~~Ga------~~Viv~d~~----~~R- 205 (350)
T COG1063 143 DEEAAALTEPLATAYHGHAERAAVRPGG-TVVVVGAGPIGLLAIALA-----KLLGA------SVVIVVDRS----PER- 205 (350)
T ss_pred ChhhhhhcChhhhhhhhhhhccCCCCCC-EEEEECCCHHHHHHHHHH-----HHcCC------ceEEEeCCC----HHH-
Confidence 33444444444544444 2223333333 999999999997763322 22464 789988763 222
Q ss_pred cCCchhchhhccc--cCCCC-CHHHHh----cccCCcEEEeccC
Q 007703 384 DSLQHFKKPWAHE--HEPVN-NLLDAV----KVIKPTILIGSSG 420 (592)
Q Consensus 384 ~~l~~~k~~fA~~--~~~~~-~L~e~V----~~vkPtvLIG~S~ 420 (592)
|+..++.++-+ ..... ...+.+ ..-..|+.|=+|+
T Consensus 206 --l~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G 247 (350)
T COG1063 206 --LELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG 247 (350)
T ss_pred --HHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC
Confidence 33333323221 01111 233333 2236899999998
No 402
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=43.02 E-value=40 Score=39.23 Aligned_cols=75 Identities=17% Similarity=0.202 Sum_probs=50.9
Q ss_pred CcccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhcc-----------
Q 007703 328 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH----------- 395 (592)
Q Consensus 328 ~l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~----------- 395 (592)
-+.+++|+|-|| ||.|-.+.++++.. + .++|.++|+.=. ++..-.+++..
T Consensus 247 ~~~gK~vLVTGagGSiGsel~~qil~~-----~------p~~i~l~~~~E~-------~~~~i~~el~~~~~~~~~~~~i 308 (588)
T COG1086 247 MLTGKTVLVTGGGGSIGSELCRQILKF-----N------PKEIILFSRDEY-------KLYLIDMELREKFPELKLRFYI 308 (588)
T ss_pred HcCCCEEEEeCCCCcHHHHHHHHHHhc-----C------CCEEEEecCchH-------HHHHHHHHHHhhCCCcceEEEe
Confidence 377899999998 68888888888763 3 378999987411 22222223322
Q ss_pred -ccCCCCCHHHHhcccCCcEEEeccC
Q 007703 396 -EHEPVNNLLDAVKVIKPTILIGSSG 420 (592)
Q Consensus 396 -~~~~~~~L~e~V~~vkPtvLIG~S~ 420 (592)
+-.+...+.++++..|||+++=+.+
T Consensus 309 gdVrD~~~~~~~~~~~kvd~VfHAAA 334 (588)
T COG1086 309 GDVRDRDRVERAMEGHKVDIVFHAAA 334 (588)
T ss_pred cccccHHHHHHHHhcCCCceEEEhhh
Confidence 1122346899999999999997655
No 403
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=42.93 E-value=27 Score=38.21 Aligned_cols=34 Identities=35% Similarity=0.594 Sum_probs=26.0
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcc
Q 007703 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 378 (592)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv 378 (592)
+++|+|||-+|.=||+.+.+ .| +++.+||++--|
T Consensus 3 d~lIVGaGlsG~V~A~~a~~-----~g-------k~VLIvekR~HI 36 (374)
T COG0562 3 DYLIVGAGLSGAVIAEVAAQ-----LG-------KRVLIVEKRNHI 36 (374)
T ss_pred cEEEECCchhHHHHHHHHHH-----cC-------CEEEEEeccccC
Confidence 58999999999999994432 35 788888875433
No 404
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=42.88 E-value=28 Score=38.14 Aligned_cols=30 Identities=20% Similarity=0.304 Sum_probs=24.9
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 334 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 334 iv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
++|+|||+||+..|..+.+ .| .++.++|++
T Consensus 3 vvVIGaGpaG~~aA~~aa~-----~g-------~~v~lie~~ 32 (463)
T TIGR02053 3 LVIIGSGAAAFAAAIKAAE-----LG-------ASVAMVERG 32 (463)
T ss_pred EEEECCCHHHHHHHHHHHH-----CC-------CeEEEEeCC
Confidence 7999999999999887765 36 478899975
No 405
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=42.79 E-value=25 Score=38.79 Aligned_cols=84 Identities=11% Similarity=0.112 Sum_probs=48.4
Q ss_pred HHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhcc----
Q 007703 320 AALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH---- 395 (592)
Q Consensus 320 ~Alr~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~---- 395 (592)
.++.-....|...|+.|+|-..-.+++++.|.+ .|+.. .. +++........+.-+.+..
T Consensus 292 ~~~~~~~~~l~gkrv~i~g~~~~~~~la~~L~e-----lGm~v------~~------~~~~~~~~~~~~~~~~~l~~~~~ 354 (435)
T cd01974 292 DAMTDSHQYLHGKKFALYGDPDFLIGLTSFLLE-----LGMEP------VH------VLTGNGGKRFEKEMQALLDASPY 354 (435)
T ss_pred HHHHHHHHhcCCCEEEEEcChHHHHHHHHHHHH-----CCCEE------EE------EEeCCCCHHHHHHHHHHHhhcCC
Confidence 334444456788999999988889999998874 38732 11 1111111100111111111
Q ss_pred -------ccCCCCCHHHHhcccCCcEEEeccC
Q 007703 396 -------EHEPVNNLLDAVKVIKPTILIGSSG 420 (592)
Q Consensus 396 -------~~~~~~~L~e~V~~vkPtvLIG~S~ 420 (592)
...+...+.+.++..+||++||-|.
T Consensus 355 ~~~~~v~~~~d~~e~~~~i~~~~pDliiG~s~ 386 (435)
T cd01974 355 GAGAKVYPGKDLWHLRSLLFTEPVDLLIGNTY 386 (435)
T ss_pred CCCcEEEECCCHHHHHHHHhhcCCCEEEECcc
Confidence 1122345788889999999999775
No 406
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=42.79 E-value=31 Score=40.13 Aligned_cols=34 Identities=21% Similarity=0.379 Sum_probs=26.9
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
...||+|+|||.||+..|..+.. .| .++.++|+.
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~-----~G-------~~Vtv~e~~ 225 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLR-----KG-------HDVTIFDAN 225 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-----CC-------CcEEEEecC
Confidence 45799999999999999988864 25 357777764
No 407
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=42.66 E-value=35 Score=36.75 Aligned_cols=35 Identities=23% Similarity=0.321 Sum_probs=25.3
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcc
Q 007703 334 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 378 (592)
Q Consensus 334 iv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv 378 (592)
|+|+|||.||+.+|..|.+. ..| .++.++|+.-.+
T Consensus 2 viIvGaG~AGl~lA~~L~~~---~~g-------~~V~lle~~~~~ 36 (370)
T TIGR01789 2 CIIVGGGLAGGLIALRLQRA---RPD-------FRIRVIEAGRTI 36 (370)
T ss_pred EEEECccHHHHHHHHHHHhc---CCC-------CeEEEEeCCCCC
Confidence 79999999999999877643 124 357777775433
No 408
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=42.63 E-value=1.3e+02 Score=31.50 Aligned_cols=83 Identities=19% Similarity=0.286 Sum_probs=49.6
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhccccCCCCCHHHHhcccC
Q 007703 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 411 (592)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vk 411 (592)
+||.|+|.|+.+. +|+.+...|.+ .| ++.++++...... .. + . .+ -+
T Consensus 48 ~~I~i~G~G~S~~-~a~~~~~~l~~-~g-------~~~~~~~~~~~~~---------~~---~------~----~~--~~ 94 (326)
T PRK10892 48 GKVVVMGMGKSGH-IGRKMAATFAS-TG-------TPSFFVHPGEAAH---------GD---L------G----MV--TP 94 (326)
T ss_pred CeEEEEeCcHhHH-HHHHHHHHHhc-CC-------ceeEEeChHHhhc---------cc---c------c----cC--CC
Confidence 6899999998775 77777666654 34 3444433211000 00 0 0 01 14
Q ss_pred CcEEEeccCCCCCCCHHHHHHHHc--cCCCCceEEecCCCC
Q 007703 412 PTILIGSSGVGRTFTKEVIEAMAS--FNEVKPLILALSNPT 450 (592)
Q Consensus 412 PtvLIG~S~~~g~Ft~evv~~Ma~--~~e~rPIIFaLSNPt 450 (592)
-|++|+.|..|. |+++++.+.. .+. -|+|-==+||.
T Consensus 95 ~d~~I~iS~sG~--t~~~~~~~~~ak~~g-~~vi~iT~~~~ 132 (326)
T PRK10892 95 QDVVIAISNSGE--SSEILALIPVLKRLH-VPLICITGRPE 132 (326)
T ss_pred CCEEEEEeCCCC--CHHHHHHHHHHHHCC-CcEEEEECCCC
Confidence 689999999886 9999998754 333 46655444454
No 409
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=42.51 E-value=25 Score=36.93 Aligned_cols=20 Identities=20% Similarity=0.376 Sum_probs=17.7
Q ss_pred EEEeCcChHHHHHHHHHHHH
Q 007703 334 FLFLGAGEAGTGIAELIALE 353 (592)
Q Consensus 334 iv~~GAGsAg~GIA~ll~~~ 353 (592)
|+|+|||.||+..|-.|.+.
T Consensus 2 v~IvGaG~aGl~~A~~L~~~ 21 (382)
T TIGR01984 2 VIIVGGGLVGLSLALALSRL 21 (382)
T ss_pred EEEECccHHHHHHHHHHhcC
Confidence 79999999999999988753
No 410
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=42.46 E-value=28 Score=39.04 Aligned_cols=37 Identities=24% Similarity=0.390 Sum_probs=29.3
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
||+++|||..|+-+++.|+.+ |+...+ ..+|.++|.+
T Consensus 1 kVlvVGaGGlGcE~lKnLal~-----Gv~~g~-~G~I~IvD~D 37 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALM-----GVGTGE-SGEITVTDMD 37 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CCCcCC-CCeEEEECCC
Confidence 689999999999999999875 652211 2689999986
No 411
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=42.28 E-value=29 Score=35.66 Aligned_cols=37 Identities=27% Similarity=0.454 Sum_probs=28.6
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcc
Q 007703 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 378 (592)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv 378 (592)
.+-.++|+|||.||+..|..+.+ .| .++.+++++.-+
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~-----~G-------~~V~vlEk~~~~ 56 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAK-----NG-------LKVCVLERSLAF 56 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHH-----CC-------CcEEEEecCCCC
Confidence 46789999999999999887654 35 468888887543
No 412
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=42.28 E-value=37 Score=36.27 Aligned_cols=38 Identities=18% Similarity=0.306 Sum_probs=29.0
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCc
Q 007703 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (592)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GL 377 (592)
++-.|+|+|||.+|+.+|-.|.+. .|. +++.++|++.+
T Consensus 29 ~~~dvvIIGgGi~G~s~A~~L~~~----~g~------~~V~vle~~~~ 66 (407)
T TIGR01373 29 PTYDVIIVGGGGHGLATAYYLAKE----HGI------TNVAVLEKGWL 66 (407)
T ss_pred ccCCEEEECCcHHHHHHHHHHHHh----cCC------CeEEEEEcccc
Confidence 456799999999999999887652 253 47888987643
No 413
>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]
Probab=42.21 E-value=34 Score=37.25 Aligned_cols=50 Identities=22% Similarity=0.274 Sum_probs=36.5
Q ss_pred CHHHHhcccCCcEEEeccCCCC-----CCCHHHHHHHHccCCCCceEEecCCCC-CCCCCCH
Q 007703 402 NLLDAVKVIKPTILIGSSGVGR-----TFTKEVIEAMASFNEVKPLILALSNPT-SQSECTA 457 (592)
Q Consensus 402 ~L~e~V~~vkPtvLIG~S~~~g-----~Ft~evv~~Ma~~~e~rPIIFaLSNPt-~~aEct~ 457 (592)
-+.|.+++ -|++|=+.-.|| +.|+++|++|.. --+|.=|+--+ -++|+|-
T Consensus 237 ~~a~~~~~--~DivITTAlIPGrpAP~Lvt~~mv~sMkp----GSViVDlAa~~GGNce~t~ 292 (356)
T COG3288 237 LVAEQAKE--VDIVITTALIPGRPAPKLVTAEMVASMKP----GSVIVDLAAETGGNCELTE 292 (356)
T ss_pred HHHHHhcC--CCEEEEecccCCCCCchhhHHHHHHhcCC----CcEEEEehhhcCCCccccc
Confidence 45666765 888887766665 799999999986 67788777544 4566654
No 414
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=42.10 E-value=98 Score=31.82 Aligned_cols=32 Identities=16% Similarity=0.295 Sum_probs=25.1
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
.||.|+|.|..|..+|..+.. .| .+++++|++
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~-----~g-------~~v~~~d~~ 34 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLK-----AG-------YSLVVYDRN 34 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHH-----CC-------CeEEEEcCC
Confidence 479999999999999998865 25 356777764
No 415
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=42.09 E-value=31 Score=38.61 Aligned_cols=36 Identities=17% Similarity=0.260 Sum_probs=29.1
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCC
Q 007703 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (592)
Q Consensus 329 l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 376 (592)
+++++|||+|+|..|+-||..|... .++++++-+.+
T Consensus 202 ~~gk~VvVVG~G~Sg~diA~~L~~~------------a~~V~l~~r~~ 237 (461)
T PLN02172 202 FKNEVVVVIGNFASGADISRDIAKV------------AKEVHIASRAS 237 (461)
T ss_pred cCCCEEEEECCCcCHHHHHHHHHHh------------CCeEEEEEeec
Confidence 6899999999999999999887653 26788776654
No 416
>PRK07890 short chain dehydrogenase; Provisional
Probab=42.05 E-value=62 Score=31.64 Aligned_cols=36 Identities=19% Similarity=0.397 Sum_probs=24.1
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 329 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 329 l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
+++.+++|.||++ ||...++..+.+ .|. +++++|+.
T Consensus 3 l~~k~vlItGa~~---~IG~~la~~l~~-~G~-------~V~~~~r~ 38 (258)
T PRK07890 3 LKGKVVVVSGVGP---GLGRTLAVRAAR-AGA-------DVVLAART 38 (258)
T ss_pred cCCCEEEEECCCC---cHHHHHHHHHHH-cCC-------EEEEEeCC
Confidence 5678999999844 455555555554 363 68888863
No 417
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=42.04 E-value=37 Score=35.27 Aligned_cols=42 Identities=14% Similarity=0.234 Sum_probs=30.4
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhh----cCcEEEEccCC
Q 007703 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEET----RKKICLVDSKG 376 (592)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA----~~~i~lvD~~G 376 (592)
+..||+++|+|.-|.-+++.|+.. |+...+- --+|.++|.+=
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~-----G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARL-----HHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHc-----cccccccCCCCCCEEEEECCCE
Confidence 467999999999999999999875 3211000 02899999873
No 418
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=42.03 E-value=25 Score=39.07 Aligned_cols=35 Identities=31% Similarity=0.521 Sum_probs=27.4
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
.+||||+|+|-+|+-.|..+.... . .-+|.+||++
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~-~---------~~~itLVd~~ 37 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKL-P---------DVEITLVDRR 37 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcC-C---------CCcEEEEeCC
Confidence 579999999999999998886532 1 2368888875
No 419
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=42.00 E-value=99 Score=31.01 Aligned_cols=97 Identities=16% Similarity=0.200 Sum_probs=50.5
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhc----hhhcc-ccCCCCCHHHH
Q 007703 333 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK----KPWAH-EHEPVNNLLDA 406 (592)
Q Consensus 333 riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k----~~fA~-~~~~~~~L~e~ 406 (592)
||+|.|| |..|..+++.+.+ .| .++.++|+. .......+.... ..+.. +.....++.++
T Consensus 1 kvlV~GatG~iG~~l~~~l~~-----~g-------~~V~~~~~~---~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 65 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLE-----SG-------HEVVVLDNL---SNGSPEALKRGERITRVTFVEGDLRDRELLDRL 65 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHh-----CC-------CeEEEEeCC---CccchhhhhhhccccceEEEECCCCCHHHHHHH
Confidence 5788876 7777777766654 25 356677642 111001111110 01111 22223457777
Q ss_pred hcccCCcEEEeccCCCCCC----------------CHHHHHHHHccCCCCceEEe
Q 007703 407 VKVIKPTILIGSSGVGRTF----------------TKEVIEAMASFNEVKPLILA 445 (592)
Q Consensus 407 V~~vkPtvLIG~S~~~g~F----------------t~evv~~Ma~~~e~rPIIFa 445 (592)
++..++|++|=+.+....+ +..++++|.+..- +.+||.
T Consensus 66 ~~~~~~d~vv~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~~v~~ 119 (328)
T TIGR01179 66 FEEHKIDAVIHFAGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGV-KKFIFS 119 (328)
T ss_pred HHhCCCcEEEECccccCcchhhcCchhhhhhhHHHHHHHHHHHHhcCC-CEEEEe
Confidence 8777899999655532111 2455677776555 667763
No 420
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=41.98 E-value=1.5e+02 Score=30.37 Aligned_cols=88 Identities=20% Similarity=0.256 Sum_probs=52.5
Q ss_pred ceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhccccCCCCCHHHHhccc
Q 007703 332 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI 410 (592)
Q Consensus 332 ~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~v 410 (592)
.||.++|+ |..|-.+++.+... .++ +=..++|++. ++.... ..+ +-....++.++++
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~----~~~------elvav~d~~~----~~~~~~----~~~--~i~~~~dl~~ll~-- 59 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAA----EDL------ELVAAVDRPG----SPLVGQ----GAL--GVAITDDLEAVLA-- 59 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhC----CCC------EEEEEEecCC----cccccc----CCC--CccccCCHHHhcc--
Confidence 38999999 99998888766431 232 3355677652 111101 111 1112367888886
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHccCCCCceEEe
Q 007703 411 KPTILIGSSGVGRTFTKEVIEAMASFNEVKPLILA 445 (592)
Q Consensus 411 kPtvLIG~S~~~g~Ft~evv~~Ma~~~e~rPIIFa 445 (592)
+||++|=+|.+. . ..++++...+. . .|+|..
T Consensus 60 ~~DvVid~t~p~-~-~~~~~~~al~~-G-~~vvig 90 (257)
T PRK00048 60 DADVLIDFTTPE-A-TLENLEFALEH-G-KPLVIG 90 (257)
T ss_pred CCCEEEECCCHH-H-HHHHHHHHHHc-C-CCEEEE
Confidence 599999888543 2 36666665543 4 678755
No 421
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=41.90 E-value=25 Score=37.29 Aligned_cols=34 Identities=21% Similarity=0.349 Sum_probs=26.2
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCC
Q 007703 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (592)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 376 (592)
...|+|+|||.+|+..|-.|.+ .|+ ++.++|++-
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~-----~G~-------~v~liE~~~ 39 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALAD-----AGL-------SVALVEGRE 39 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhc-----CCC-------EEEEEeCCC
Confidence 3579999999999999977654 364 577888753
No 422
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=41.84 E-value=36 Score=31.06 Aligned_cols=31 Identities=29% Similarity=0.423 Sum_probs=24.8
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCC
Q 007703 334 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (592)
Q Consensus 334 iv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 376 (592)
|+|+|||+.|.-+|-.|.++ | .++.++++..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~-----g-------~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA-----G-------HDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT-----T-------CEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHC-----C-------CceEEEEccc
Confidence 78999999999998888652 4 4688888765
No 423
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=41.78 E-value=28 Score=38.88 Aligned_cols=33 Identities=27% Similarity=0.391 Sum_probs=27.1
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCC
Q 007703 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (592)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 376 (592)
..|||+|+|.+|+++|..+.. .|+ ++.|++++-
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~-----rG~-------~V~LlEk~d 39 (502)
T PRK13369 7 YDLFVIGGGINGAGIARDAAG-----RGL-------KVLLCEKDD 39 (502)
T ss_pred cCEEEECCCHHHHHHHHHHHh-----CCC-------cEEEEECCC
Confidence 479999999999999998865 365 588888763
No 424
>PRK07588 hypothetical protein; Provisional
Probab=41.56 E-value=32 Score=36.54 Aligned_cols=21 Identities=29% Similarity=0.349 Sum_probs=18.0
Q ss_pred ceEEEeCcChHHHHHHHHHHH
Q 007703 332 HRFLFLGAGEAGTGIAELIAL 352 (592)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~ 352 (592)
.+|+|+|||.||+..|-.|.+
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~ 21 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRR 21 (391)
T ss_pred CeEEEECccHHHHHHHHHHHH
Confidence 379999999999999987764
No 425
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=41.48 E-value=31 Score=39.20 Aligned_cols=33 Identities=33% Similarity=0.550 Sum_probs=26.8
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
+-.|+|+|+|..|++||..+.. .|+ ++.|+|+.
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~-----rG~-------~V~LlEk~ 38 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCAL-----RGL-------RCILVERH 38 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHH-----cCC-------eEEEEECC
Confidence 3569999999999999998875 264 57888875
No 426
>PRK08244 hypothetical protein; Provisional
Probab=41.39 E-value=30 Score=38.21 Aligned_cols=21 Identities=29% Similarity=0.506 Sum_probs=18.4
Q ss_pred ceEEEeCcChHHHHHHHHHHH
Q 007703 332 HRFLFLGAGEAGTGIAELIAL 352 (592)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~ 352 (592)
..|+|+|||.+|+..|-.|.+
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~ 23 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELAL 23 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHH
Confidence 469999999999999988765
No 427
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=41.31 E-value=82 Score=33.45 Aligned_cols=156 Identities=12% Similarity=0.129 Sum_probs=77.1
Q ss_pred hcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecC----ceecccCCCCCCccccchhhHHHHHHhcCCCCCceeeEE
Q 007703 154 FRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDG----ERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPIT 229 (592)
Q Consensus 154 ~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG----~rILGLGDlG~~GmgI~iGKl~LYta~gGI~P~~~LPI~ 229 (592)
-+++.|+-++..|...+...++..-...+-|+.+-.. .+..-.|--..+.+|-..+++... ..++ ...+.. ++
T Consensus 78 ~~~vdgIiv~~~d~~al~~~l~~a~~~gIpVV~~d~~~~~~~~~~~V~~~~~~~~G~~~~~~l~~-~l~~-g~gki~-il 154 (336)
T PRK15408 78 NQGYNAIIVSAVSPDGLCPALKRAMQRGVKVLTWDSDTKPECRSYYINQGTPEQLGSMLVEMAAK-QVGK-DKAKVA-FF 154 (336)
T ss_pred HcCCCEEEEecCCHHHHHHHHHHHHHCCCeEEEeCCCCCCccceEEEecCCHHHHHHHHHHHHHH-hcCC-CCCEEE-EE
Confidence 4678899998888777777777665566666666321 232222210112333333343332 2221 111222 22
Q ss_pred eecCCCchhcccCcccccccccCCChhhhHHHHHHHHHHHHHhcCCCeee---eeecCCCchHH----HHHHHHcCCCce
Q 007703 230 VDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLI---QFEDFANHNAF----ELLAKYGTTHLV 302 (592)
Q Consensus 230 LDvGTnNe~LL~Dp~YlG~r~~R~~geeY~~~idefv~av~~~fGp~~lI---qfEDf~~~~Af----~lL~ryr~~~~~ 302 (592)
.|.-+. ....+..+.|.+.+++.| |+.-| ++.|+....|+ ++|++|-+--.+
T Consensus 155 --~g~~~~------------------~~~~~r~~g~~~~l~~~~-p~~~vv~~~~~~~d~~~a~~~~~~lL~~~pdi~aI 213 (336)
T PRK15408 155 --YSSPTV------------------TDQNQWVKEAKAKIAKEH-PGWEIVTTQFGYNDATKSLQTAEGILKAYPDLDAI 213 (336)
T ss_pred --ECCCCC------------------ccHHHHHHHHHHHHHhhC-CCCEEEeecCCCCcHHHHHHHHHHHHHHCCCCcEE
Confidence 231100 011233566666777777 65433 34455555555 466665442222
Q ss_pred eccCCcchHHHHHHHHHHHHHHhCCCcccceEEEeCcChH
Q 007703 303 FNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEA 342 (592)
Q Consensus 303 FNDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsA 342 (592)
|--| ...+.|.+.|++..|+. +|.++|-+.-
T Consensus 214 ~~~~-----~~~~~Ga~~Al~~~g~~----~v~VvG~D~~ 244 (336)
T PRK15408 214 IAPD-----ANALPAAAQAAENLKRD----KVAIVGFSTP 244 (336)
T ss_pred EECC-----CccHHHHHHHHHhCCCC----CEEEEEeCCc
Confidence 2212 23445668888888863 5777776543
No 428
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=41.23 E-value=32 Score=39.89 Aligned_cols=33 Identities=21% Similarity=0.320 Sum_probs=27.5
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCC
Q 007703 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (592)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 376 (592)
..|+|+|||.+|+.+|-.|.+ .|. ++.++|++.
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~-----~G~-------~V~VlE~~~ 293 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALAR-----RGW-------QVTLYEADE 293 (662)
T ss_pred CCEEEECccHHHHHHHHHHHH-----CCC-------eEEEEecCC
Confidence 479999999999999998865 363 689999874
No 429
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=41.23 E-value=29 Score=37.74 Aligned_cols=32 Identities=22% Similarity=0.414 Sum_probs=26.4
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
-.+||+|+|+||+..|..+.+. | .++.++|++
T Consensus 4 yDvvVIGgGpaGl~aA~~la~~-----g-------~~V~lie~~ 35 (441)
T PRK08010 4 YQAVIIGFGKAGKTLAVTLAKA-----G-------WRVALIEQS 35 (441)
T ss_pred CCEEEECCCHhHHHHHHHHHHC-----C-------CeEEEEcCC
Confidence 4699999999999999888652 5 568999975
No 430
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=41.16 E-value=27 Score=40.58 Aligned_cols=35 Identities=26% Similarity=0.374 Sum_probs=26.8
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
++..|+|+|||.||+-.|-.|.+. .|+ ++.++|++
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~----~Gi-------~v~IiE~~ 65 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAF----PDI-------TTRIVERK 65 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcC----CCC-------cEEEEEcC
Confidence 356899999999999998887651 265 46778876
No 431
>PRK06823 ornithine cyclodeaminase; Validated
Probab=41.02 E-value=1.8e+02 Score=31.12 Aligned_cols=105 Identities=10% Similarity=0.118 Sum_probs=65.2
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhcccc---CCCCCHHHH
Q 007703 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH---EPVNNLLDA 406 (592)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~---~~~~~L~e~ 406 (592)
.-.++.++|+|.-+-..++.++.. ..+ ++|+++|+. .++ ...+...+.+.. ....+.+|+
T Consensus 127 d~~~l~iiG~G~qA~~~~~a~~~v----~~i------~~v~v~~r~----~~~---a~~~~~~~~~~~~~v~~~~~~~~a 189 (315)
T PRK06823 127 HVSAIGIVGTGIQARMQLMYLKNV----TDC------RQLWVWGRS----ETA---LEEYRQYAQALGFAVNTTLDAAEV 189 (315)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhc----CCC------CEEEEECCC----HHH---HHHHHHHHHhcCCcEEEECCHHHH
Confidence 357999999999988887776553 123 788888773 222 222332221111 123689999
Q ss_pred hcccCCcEEEeccCC-CCCCCHHHHHHHHccCCCCceEEecCCCC-CCCCCCHHHH
Q 007703 407 VKVIKPTILIGSSGV-GRTFTKEVIEAMASFNEVKPLILALSNPT-SQSECTAEEA 460 (592)
Q Consensus 407 V~~vkPtvLIG~S~~-~g~Ft~evv~~Ma~~~e~rPIIFaLSNPt-~~aEct~e~A 460 (592)
|+. .|+++-+++. ..+|..+.++ + .-.|.+...-+ .+.|+.++-.
T Consensus 190 v~~--ADIV~taT~s~~P~~~~~~l~------~-G~hi~~iGs~~p~~~Eld~~~l 236 (315)
T PRK06823 190 AHA--ANLIVTTTPSREPLLQAEDIQ------P-GTHITAVGADSPGKQELDAELV 236 (315)
T ss_pred hcC--CCEEEEecCCCCceeCHHHcC------C-CcEEEecCCCCcccccCCHHHH
Confidence 976 9999875432 3477777775 2 45577775322 4688888654
No 432
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=40.96 E-value=30 Score=32.65 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=19.5
Q ss_pred CcccceEEEeCcChHHHHHHHHHHH
Q 007703 328 TLAEHRFLFLGAGEAGTGIAELIAL 352 (592)
Q Consensus 328 ~l~d~riv~~GAGsAg~GIA~ll~~ 352 (592)
.+++++|+|+|+|..|+-+|..|..
T Consensus 164 ~~~~k~V~VVG~G~SA~d~a~~l~~ 188 (203)
T PF13738_consen 164 DFKGKRVVVVGGGNSAVDIAYALAK 188 (203)
T ss_dssp GCTTSEEEEE--SHHHHHHHHHHTT
T ss_pred hcCCCcEEEEcChHHHHHHHHHHHh
Confidence 6778999999999999988877654
No 433
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=40.90 E-value=71 Score=32.98 Aligned_cols=43 Identities=19% Similarity=0.213 Sum_probs=28.4
Q ss_pred CCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHH-HHc----cCCCCceEE
Q 007703 399 PVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEA-MAS----FNEVKPLIL 444 (592)
Q Consensus 399 ~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~-Ma~----~~e~rPIIF 444 (592)
-..++.|.++.-++|+++ ..++. .+..|++.+ +.. +|| +|+-.
T Consensus 55 ~~~~~~~ll~~~~iD~V~-Iatp~-~~H~e~~~~AL~aGkhVl~E-KPla~ 102 (342)
T COG0673 55 AYTDLEELLADPDIDAVY-IATPN-ALHAELALAALEAGKHVLCE-KPLAL 102 (342)
T ss_pred ccCCHHHHhcCCCCCEEE-EcCCC-hhhHHHHHHHHhcCCEEEEc-CCCCC
Confidence 457899999997788887 44433 566666543 432 467 87654
No 434
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=40.89 E-value=31 Score=38.00 Aligned_cols=33 Identities=24% Similarity=0.267 Sum_probs=26.8
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
.-.+||+|+|+||+..|..+.+ .| +++.++|+.
T Consensus 4 ~ydvvVIG~GpaG~~aA~~aa~-----~G-------~~v~lie~~ 36 (472)
T PRK05976 4 EYDLVIIGGGPGGYVAAIRAGQ-----LG-------LKTALVEKG 36 (472)
T ss_pred cccEEEECCCHHHHHHHHHHHh-----CC-------CeEEEEEcc
Confidence 3469999999999999987765 26 579999975
No 435
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=40.84 E-value=20 Score=39.30 Aligned_cols=135 Identities=20% Similarity=0.368 Sum_probs=73.2
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhh-----cCcEEEEccCCccc--CCCc--cCCchhchhhccc----
Q 007703 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEET-----RKKICLVDSKGLIV--SSRK--DSLQHFKKPWAHE---- 396 (592)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA-----~~~i~lvD~~GLv~--~~R~--~~l~~~k~~fA~~---- 396 (592)
+..+++++|.|++|+|+|..+..-+-+. .+-.-|- .+-.|-+=--||-. ++|. .+|-+-...|-++
T Consensus 38 ~h~kvLVvGGGsgGi~~A~k~~rkl~~g-~vgIvep~e~HyYQPgfTLvGgGl~~l~~srr~~a~liP~~a~wi~ekv~~ 116 (446)
T KOG3851|consen 38 KHFKVLVVGGGSGGIGMAAKFYRKLGSG-SVGIVEPAEDHYYQPGFTLVGGGLKSLDSSRRKQASLIPKGATWIKEKVKE 116 (446)
T ss_pred cceEEEEEcCCcchhHHHHHHHhhcCCC-ceEEecchhhcccCcceEEeccchhhhhhccCcccccccCCcHHHHHHHHh
Confidence 4689999999999999999987755331 1111111 12244443445532 2232 1333333334331
Q ss_pred ------------cC------------------CCCCHHHHhcccCCcEEEeccCCCCCCCHH----HHHHHHccCCCCce
Q 007703 397 ------------HE------------------PVNNLLDAVKVIKPTILIGSSGVGRTFTKE----VIEAMASFNEVKPL 442 (592)
Q Consensus 397 ------------~~------------------~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~e----vv~~Ma~~~e~rPI 442 (592)
++ .++.|.|+++. | |+.+ ..++. +-++.-..++ --.
T Consensus 117 f~P~~N~v~t~gg~eIsYdylviA~Giql~y~~IkGl~Eal~t--P----~VcS---nYSpkyvdk~y~~~~~fk~-GNA 186 (446)
T KOG3851|consen 117 FNPDKNTVVTRGGEEISYDYLVIAMGIQLDYGKIKGLVEALDT--P----GVCS---NYSPKYVDKVYKELMNFKK-GNA 186 (446)
T ss_pred cCCCcCeEEccCCcEEeeeeEeeeeeceeccchhcChHhhccC--C----Cccc---ccChHHHHHHHHHHHhccC-Cce
Confidence 01 12378888886 6 3333 33443 3444455666 778
Q ss_pred EEecCCCCCCCCCCHHHHh-------cc----ccCcEEEecCCC
Q 007703 443 ILALSNPTSQSECTAEEAY-------TW----SKGRAIFASGSP 475 (592)
Q Consensus 443 IFaLSNPt~~aEct~e~A~-------~w----t~G~aifAsGSP 475 (592)
||..-|-.-|+---|+-+. .. ++-..||+|+-|
T Consensus 187 IfTfPntpiKCAGAPQKi~yise~y~Rk~gvRd~a~iiy~Tsl~ 230 (446)
T KOG3851|consen 187 IFTFPNTPIKCAGAPQKIMYISESYFRKRGVRDNANIIYNTSLP 230 (446)
T ss_pred EEecCCCccccCCCchhhhhhhHHHHHHhCccccccEEEecCcc
Confidence 9999884433433333322 11 344679999866
No 436
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=40.82 E-value=33 Score=36.52 Aligned_cols=31 Identities=26% Similarity=0.458 Sum_probs=25.1
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
+|+|+|||-+|+.+|..+.. .| .++.++|+.
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~-----~g-------~~V~vle~~ 32 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQ-----AG-------HEVTVIDRQ 32 (416)
T ss_pred EEEEECCcHHHHHHHHHHHH-----CC-------CEEEEEeCC
Confidence 68999999999999987754 25 368888875
No 437
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=40.82 E-value=29 Score=36.11 Aligned_cols=31 Identities=26% Similarity=0.471 Sum_probs=23.7
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCC
Q 007703 334 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (592)
Q Consensus 334 iv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 376 (592)
|+|+|||.||+-.|-.|.+ .|+ ++.++|+.-
T Consensus 2 ViIvGaG~aGl~~A~~L~~-----~G~-------~v~v~Er~~ 32 (385)
T TIGR01988 2 IVIVGGGMVGLALALALAR-----SGL-------KIALIEATP 32 (385)
T ss_pred EEEECCCHHHHHHHHHHhc-----CCC-------EEEEEeCCC
Confidence 7999999999999987764 364 466676663
No 438
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=40.67 E-value=32 Score=37.47 Aligned_cols=30 Identities=27% Similarity=0.321 Sum_probs=25.0
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcc
Q 007703 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 374 (592)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~ 374 (592)
.++|+|||.||+..|..+.. .| .++.++|+
T Consensus 3 DvvVIG~G~aGl~aA~~la~-----~G-------~~v~lie~ 32 (461)
T TIGR01350 3 DVVVIGGGPGGYVAAIRAAQ-----LG-------LKVALVEK 32 (461)
T ss_pred cEEEECCCHHHHHHHHHHHh-----CC-------CeEEEEec
Confidence 58999999999999988765 25 47889998
No 439
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=40.50 E-value=67 Score=33.06 Aligned_cols=150 Identities=17% Similarity=0.286 Sum_probs=84.8
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhccccCCCCCHHHH
Q 007703 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDA 406 (592)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~ 406 (592)
.-.+-.++||+|+=--|.-+|++|..+ .+++++|-+ ++.+.|-+..-....+.--
T Consensus 41 ~~~E~~~vli~G~YltG~~~a~~Ls~~-------------~~vtv~Di~------------p~~r~~lp~~v~Fr~~~~~ 95 (254)
T COG4017 41 EGEEFKEVLIFGVYLTGNYTAQMLSKA-------------DKVTVVDIH------------PFMRGFLPNNVKFRNLLKF 95 (254)
T ss_pred cccCcceEEEEEeeehhHHHHHHhccc-------------ceEEEecCC------------HHHHhcCCCCccHhhhcCC
Confidence 334567999999999998898877432 679999864 2333333221111111111
Q ss_pred hcccCCcEEEeccCCCCCCCHHHHHHHHccCCCCceEEecCCCCCCCCCCHHHHhccccCcEEEecCCCCCcceeCCeee
Q 007703 407 VKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVF 486 (592)
Q Consensus 407 V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~e~rPIIFaLSNPt~~aEct~e~A~~wt~G~aifAsGSPF~pV~~~G~~~ 486 (592)
++. .-|++|-+.|-|| .++++++.. .|=+|-.-||++ -..-++.|.+.+ |---..+++-+=|
T Consensus 96 ~~G-~~DlivDlTGlGG-~~Pe~L~~f------np~vfiVEdP~g--n~~D~~I~eyn~------T~eRlea~ee~~k-- 157 (254)
T COG4017 96 IRG-EVDLIVDLTGLGG-IEPEFLAKF------NPKVFIVEDPKG--NVFDVDIYEYNN------TYERLEAFEEKAK-- 157 (254)
T ss_pred CCC-ceeEEEeccccCC-CCHHHHhcc------CCceEEEECCCC--CCCccchhhcCC------HHHHHHhhHhhhh--
Confidence 111 2378888999887 588888754 566888889984 222223332211 0000000000000
Q ss_pred CccCCcccccchhhhHHHHHhCCcccCHHHHHHHHHHHHcc
Q 007703 487 VPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQ 527 (592)
Q Consensus 487 ~p~Q~NN~yiFPGiglG~~~s~a~~Itd~m~~aAA~aLA~~ 527 (592)
+-+ =-.+++|=.||--.+|-+.+..||.+|-+.
T Consensus 158 -------~~l-~~~~~~AKTSGTmTLtv~tir~aa~~le~~ 190 (254)
T COG4017 158 -------VGL-LKTYRKAKTSGTMTLTVDTIRDAARELESL 190 (254)
T ss_pred -------hhh-hhccccccccceEEEEhHHHHHHHHHHhhh
Confidence 000 113567777888889999999999998654
No 440
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=40.49 E-value=34 Score=38.14 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=21.9
Q ss_pred cccceEEEeCcChHHHHHHHHHHH
Q 007703 329 LAEHRFLFLGAGEAGTGIAELIAL 352 (592)
Q Consensus 329 l~d~riv~~GAGsAg~GIA~ll~~ 352 (592)
++++||+|+|.|..|.++|++|..
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~ 29 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRA 29 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHH
Confidence 567899999999999999999875
No 441
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=40.49 E-value=34 Score=37.68 Aligned_cols=31 Identities=29% Similarity=0.448 Sum_probs=26.0
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
|++|+|+|+||+..|..+.+ .| +++.++|+.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~-----~g-------~~V~lie~~ 32 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQ-----NG-------KNVTLIDEA 32 (458)
T ss_pred eEEEECCCHHHHHHHHHHHh-----CC-------CcEEEEECC
Confidence 79999999999999888765 25 479999975
No 442
>PRK06182 short chain dehydrogenase; Validated
Probab=40.40 E-value=64 Score=32.21 Aligned_cols=74 Identities=18% Similarity=0.283 Sum_probs=38.1
Q ss_pred ccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhc---h-hhccccCCCCCHH
Q 007703 330 AEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK---K-PWAHEHEPVNNLL 404 (592)
Q Consensus 330 ~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k---~-~fA~~~~~~~~L~ 404 (592)
+..+++|.|| |-.|..+|+.+ .+ .| .++++++++- +.+.... . .+.-|-....++.
T Consensus 2 ~~k~vlItGasggiG~~la~~l----~~-~G-------~~V~~~~r~~-------~~l~~~~~~~~~~~~~Dv~~~~~~~ 62 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRL----AA-QG-------YTVYGAARRV-------DKMEDLASLGVHPLSLDVTDEASIK 62 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHH----HH-CC-------CEEEEEeCCH-------HHHHHHHhCCCeEEEeeCCCHHHHH
Confidence 3578999997 33444444444 33 35 3677776641 1121111 1 1111222223555
Q ss_pred HHhccc-----CCcEEEeccCCC
Q 007703 405 DAVKVI-----KPTILIGSSGVG 422 (592)
Q Consensus 405 e~V~~v-----kPtvLIG~S~~~ 422 (592)
++++.+ ++|+||=..+..
T Consensus 63 ~~~~~~~~~~~~id~li~~ag~~ 85 (273)
T PRK06182 63 AAVDTIIAEEGRIDVLVNNAGYG 85 (273)
T ss_pred HHHHHHHHhcCCCCEEEECCCcC
Confidence 666644 799999777654
No 443
>PRK06185 hypothetical protein; Provisional
Probab=40.40 E-value=33 Score=36.51 Aligned_cols=34 Identities=18% Similarity=0.350 Sum_probs=25.9
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCC
Q 007703 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (592)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 376 (592)
+..|+|+|||.+|+..|-.|.+ .|+ ++.++|++.
T Consensus 6 ~~dV~IvGgG~~Gl~~A~~La~-----~G~-------~v~liE~~~ 39 (407)
T PRK06185 6 TTDCCIVGGGPAGMMLGLLLAR-----AGV-------DVTVLEKHA 39 (407)
T ss_pred cccEEEECCCHHHHHHHHHHHh-----CCC-------cEEEEecCC
Confidence 4579999999999999877654 364 567777753
No 444
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=40.34 E-value=36 Score=36.36 Aligned_cols=22 Identities=32% Similarity=0.572 Sum_probs=18.8
Q ss_pred cceEEEeCcChHHHHHHHHHHH
Q 007703 331 EHRFLFLGAGEAGTGIAELIAL 352 (592)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~ 352 (592)
..+|+|+|||.||+-.|-.|.+
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~ 23 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHL 23 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHh
Confidence 3679999999999999887764
No 445
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=40.32 E-value=84 Score=33.77 Aligned_cols=37 Identities=27% Similarity=0.235 Sum_probs=24.8
Q ss_pred CHHHHhcccCCcE-EEeccCCCCCCCHHHHHHHHccCCCCceEE
Q 007703 402 NLLDAVKVIKPTI-LIGSSGVGRTFTKEVIEAMASFNEVKPLIL 444 (592)
Q Consensus 402 ~L~e~V~~vkPtv-LIG~S~~~g~Ft~evv~~Ma~~~e~rPIIF 444 (592)
.|.+.... .|+ ++|.|-..+ |...++|+|+. . .|||+
T Consensus 312 el~~~y~~--aDi~~v~~S~~e~-~g~~~lEAma~--G-~PVI~ 349 (425)
T PRK05749 312 ELGLLYAI--ADIAFVGGSLVKR-GGHNPLEPAAF--G-VPVIS 349 (425)
T ss_pred HHHHHHHh--CCEEEECCCcCCC-CCCCHHHHHHh--C-CCEEE
Confidence 35555554 777 677665333 55668999985 5 88886
No 446
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=40.29 E-value=2.4e+02 Score=30.11 Aligned_cols=114 Identities=19% Similarity=0.279 Sum_probs=72.9
Q ss_pred hHHHHHHHHcCCCceecc-CCcchHHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhc
Q 007703 288 NAFELLAKYGTTHLVFND-DIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETR 366 (592)
Q Consensus 288 ~Af~lL~ryr~~~~~FND-DiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~ 366 (592)
.+.+.+.+| .++|++|- |-..-=.=+|+=++.-.+..| .+++.||.++|-.+ -+++-++.++.+ .|+
T Consensus 106 ~~~~~~a~~-~~vPVINa~~~~~HPtQaL~Dl~Ti~e~~g-~l~g~~v~~vGd~~---~v~~Sl~~~l~~-~g~------ 173 (304)
T TIGR00658 106 EDVEELAKY-ASVPVINGLTDLFHPCQALADLLTIIEHFG-KLKGVKVVYVGDGN---NVCNSLMLAGAK-LGM------ 173 (304)
T ss_pred HHHHHHHHh-CCCCEEECCCCCCChHHHHHHHHHHHHHhC-CCCCcEEEEEeCCC---chHHHHHHHHHH-cCC------
Confidence 344455554 47899994 333344556777777666666 49999999999863 488888877766 464
Q ss_pred CcEEEEccCCcccCCCccCCchhchhhccc-c---CCCCCHHHHhcccCCcEEEecc
Q 007703 367 KKICLVDSKGLIVSSRKDSLQHFKKPWAHE-H---EPVNNLLDAVKVIKPTILIGSS 419 (592)
Q Consensus 367 ~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~-~---~~~~~L~e~V~~vkPtvLIG~S 419 (592)
++.++-.+++.-.. .+...-+.+++. + ....++.|+++. .||+.-.+
T Consensus 174 -~v~~~~P~~~~~~~---~~~~~~~~~~~~~g~~~~~~~d~~~a~~~--aDvvy~~~ 224 (304)
T TIGR00658 174 -DVVVATPEGYEPDA---DIVKKAQEIAKENGGSVELTHDPVEAVKG--ADVIYTDV 224 (304)
T ss_pred -EEEEECCchhcCCH---HHHHHHHHHHHHcCCeEEEEcCHHHHhCC--CCEEEEcC
Confidence 68888887763321 111112233332 1 123689999997 99998754
No 447
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=40.27 E-value=77 Score=38.35 Aligned_cols=106 Identities=14% Similarity=0.135 Sum_probs=63.5
Q ss_pred cceEEEeCcChHHHHHHHHHHHH---HHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhccc--cCCCCCHHH
Q 007703 331 EHRFLFLGAGEAGTGIAELIALE---ISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE--HEPVNNLLD 405 (592)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~---~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~--~~~~~~L~e 405 (592)
..+|.++|-|..|.|++++|.+. +.++.|+.. +=.-++||+|.+.+.+.-++..+...|... ..+...+.|
T Consensus 458 ~i~i~l~G~G~VG~~l~~~l~~~~~~l~~~~g~~~----~v~~I~~s~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~e 533 (810)
T PRK09466 458 RIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEF----VLVGVVDSRRSLLNYDGLDASRALAFFDDEAVEWDEESLFL 533 (810)
T ss_pred eEEEEEEecCCChHHHHHHHHHHHHHHHHhcCCCE----EEEEEEeCCccccCccCCCHHHHHhhHHhhcCCccHHHHHH
Confidence 46899999999999999999874 222334321 113457999888776532222333333321 122345667
Q ss_pred HhcccCCc--EEEeccCCCCCCCHHHHHHHHccCCCCceEE
Q 007703 406 AVKVIKPT--ILIGSSGVGRTFTKEVIEAMASFNEVKPLIL 444 (592)
Q Consensus 406 ~V~~vkPt--vLIG~S~~~g~Ft~evv~~Ma~~~e~rPIIF 444 (592)
.+....++ |+|=+++.. -....+.+++.. . ..+|-
T Consensus 534 ~i~~~~~~~~vvVd~t~~~-~~~~~~~~aL~~--G-~~VVt 570 (810)
T PRK09466 534 WLRAHPYDELVVLDVTASE-QLALQYPDFASH--G-FHVIS 570 (810)
T ss_pred HHhhcCCCCcEEEECCCCh-HHHHHHHHHHHc--C-CEEEc
Confidence 77766665 888888732 344556666764 3 44554
No 448
>PRK14694 putative mercuric reductase; Provisional
Probab=40.25 E-value=36 Score=37.53 Aligned_cols=34 Identities=12% Similarity=0.231 Sum_probs=27.2
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
.+-.++|+|||+||+..|..+.+. | .++.++|+.
T Consensus 5 ~~~dviVIGaG~aG~~aA~~l~~~-----g-------~~v~lie~~ 38 (468)
T PRK14694 5 NNLHIAVIGSGGSAMAAALKATER-----G-------ARVTLIERG 38 (468)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhC-----C-------CcEEEEEcc
Confidence 345799999999999999888653 5 478899975
No 449
>PRK10262 thioredoxin reductase; Provisional
Probab=40.23 E-value=28 Score=36.02 Aligned_cols=24 Identities=33% Similarity=0.433 Sum_probs=20.4
Q ss_pred cccceEEEeCcChHHHHHHHHHHH
Q 007703 329 LAEHRFLFLGAGEAGTGIAELIAL 352 (592)
Q Consensus 329 l~d~riv~~GAGsAg~GIA~ll~~ 352 (592)
-+..+|+|+|||.||+..|..+..
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~ 27 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAAR 27 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHH
Confidence 356789999999999999987765
No 450
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=40.21 E-value=35 Score=36.42 Aligned_cols=34 Identities=18% Similarity=0.374 Sum_probs=26.6
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
..|+|+|||.+|+.+|-.|.+.. .| .++.++|+.
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~---~g-------~~V~llE~~ 36 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERY---PG-------ARIAVLEKE 36 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhC---CC-------CeEEEEeCC
Confidence 46999999999999998887531 13 478889886
No 451
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=40.15 E-value=72 Score=30.77 Aligned_cols=46 Identities=26% Similarity=0.313 Sum_probs=28.6
Q ss_pred HHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 318 VVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 318 ll~Alr~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
.+.++...+.-..++++++.|+|+.|..++++... .| .+++.++++
T Consensus 122 a~~~l~~~~~~~~~~~vli~g~~~~G~~~~~~a~~-----~g-------~~v~~~~~~ 167 (271)
T cd05188 122 AYHALRRAGVLKPGDTVLVLGAGGVGLLAAQLAKA-----AG-------ARVIVTDRS 167 (271)
T ss_pred HHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHH-----cC-------CeEEEEcCC
Confidence 34455555554578999999999866555543322 35 357777664
No 452
>PRK08219 short chain dehydrogenase; Provisional
Probab=40.14 E-value=1.1e+02 Score=29.15 Aligned_cols=71 Identities=21% Similarity=0.286 Sum_probs=38.1
Q ss_pred ceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhh-----cc-ccCCCCCHH
Q 007703 332 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPW-----AH-EHEPVNNLL 404 (592)
Q Consensus 332 ~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~f-----A~-~~~~~~~L~ 404 (592)
.+++|.|| |..|..+++.|++ . .+++++|++. +.++...... -+ +-.+..++.
T Consensus 4 ~~vlVtG~~g~iG~~l~~~l~~------------~-~~V~~~~r~~-------~~~~~~~~~~~~~~~~~~D~~~~~~~~ 63 (227)
T PRK08219 4 PTALITGASRGIGAAIARELAP------------T-HTLLLGGRPA-------ERLDELAAELPGATPFPVDLTDPEAIA 63 (227)
T ss_pred CEEEEecCCcHHHHHHHHHHHh------------h-CCEEEEeCCH-------HHHHHHHHHhccceEEecCCCCHHHHH
Confidence 57899887 4455555554432 1 3577887641 1111111111 01 112224566
Q ss_pred HHhccc-CCcEEEeccCCC
Q 007703 405 DAVKVI-KPTILIGSSGVG 422 (592)
Q Consensus 405 e~V~~v-kPtvLIG~S~~~ 422 (592)
++++.+ ++|++|-+.+..
T Consensus 64 ~~~~~~~~id~vi~~ag~~ 82 (227)
T PRK08219 64 AAVEQLGRLDVLVHNAGVA 82 (227)
T ss_pred HHHHhcCCCCEEEECCCcC
Confidence 777655 689999887764
No 453
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=40.06 E-value=36 Score=36.20 Aligned_cols=32 Identities=16% Similarity=0.247 Sum_probs=24.7
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
.+|+|+|||.||+..|-.|.+ .|+ ++.++|+.
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~-----~G~-------~v~l~E~~ 35 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAK-----QGR-------SVAVIEGG 35 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHh-----CCC-------cEEEEcCC
Confidence 479999999999999977654 365 56677754
No 454
>PRK12391 tryptophan synthase subunit beta; Reviewed
Probab=39.97 E-value=2.3e+02 Score=31.76 Aligned_cols=48 Identities=17% Similarity=0.167 Sum_probs=29.9
Q ss_pred HHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCC
Q 007703 322 LKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (592)
Q Consensus 322 lr~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 376 (592)
+...|.. -|.-|+-+|.|+--.||+.-...... .|. -.-+|+.|+..|
T Consensus 247 l~~~g~~-pD~Vv~~vG~Gg~~aGi~~~f~~~~~--~g~----~~~riiaVEp~~ 294 (427)
T PRK12391 247 LELAGEY-PDVVIGCVGGGSNFAGLAFPFLGDKL--EGK----KDTRFIAVEPAA 294 (427)
T ss_pred HHhcCCC-CCEEEEecCchHHHHHHHHHHHHHHh--cCC----CCceEEEEeecc
Confidence 3333343 38889999999888899874433211 241 124789888864
No 455
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=39.93 E-value=5e+02 Score=27.77 Aligned_cols=136 Identities=13% Similarity=0.157 Sum_probs=81.0
Q ss_pred HHHHHHHHHHhcCCCeeeeeecCCCchHHHHHHHHcCCCceecc--CCcchHHHHHHHHHHHHHHhCCCcccceEEEeCc
Q 007703 262 LDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFND--DIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGA 339 (592)
Q Consensus 262 idefv~av~~~fGp~~lIqfEDf~~~~Af~lL~ryr~~~~~FND--DiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GA 339 (592)
+.+.+..+ .+| .++++ +-.+.. ...+.+.+| .++||.|- +..--=.=+||=++.-.+..| ++++.||+++|-
T Consensus 85 i~Dta~vl-s~y-~D~iv-iR~~~~-~~~~~~a~~-s~vPVINa~~g~~~HPtQ~LaDl~Ti~e~~g-~l~g~~va~vGD 158 (301)
T TIGR00670 85 LADTIKTL-SGY-SDAIV-IRHPLE-GAARLAAEV-SEVPVINAGDGSNQHPTQTLLDLYTIYEEFG-RLDGLKIALVGD 158 (301)
T ss_pred HHHHHHHH-HHh-CCEEE-EECCch-hHHHHHHhh-CCCCEEeCCCCCCCCcHHHHHHHHHHHHHhC-CCCCCEEEEEcc
Confidence 34444443 446 44444 444443 333444555 47999995 333344556777777666665 699999999998
Q ss_pred ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhccc-cC---CCCCHHHHhcccCCcEE
Q 007703 340 GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HE---PVNNLLDAVKVIKPTIL 415 (592)
Q Consensus 340 GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~-~~---~~~~L~e~V~~vkPtvL 415 (592)
|.=+ -+++-++.++.+ .|+ ++.++-.+|+- +++.....|+. +. -..++.++++. .||+
T Consensus 159 ~~~~-~v~~Sl~~~~a~-~g~-------~v~~~~P~~~~-------~~~~~~~~~~~~G~~v~~~~d~~~a~~~--aDvv 220 (301)
T TIGR00670 159 LKYG-RTVHSLAEALTR-FGV-------EVYLISPEELR-------MPKEILEELKAKGIKVRETESLEEVIDE--ADVL 220 (301)
T ss_pred CCCC-cHHHHHHHHHHH-cCC-------EEEEECCcccc-------CCHHHHHHHHHcCCEEEEECCHHHHhCC--CCEE
Confidence 6311 445655555554 475 57778777661 22222223332 11 13689999997 9999
Q ss_pred EeccCC
Q 007703 416 IGSSGV 421 (592)
Q Consensus 416 IG~S~~ 421 (592)
.-.+-+
T Consensus 221 yt~~~~ 226 (301)
T TIGR00670 221 YVTRIQ 226 (301)
T ss_pred EECCcc
Confidence 987754
No 456
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=39.91 E-value=35 Score=37.37 Aligned_cols=33 Identities=27% Similarity=0.483 Sum_probs=22.8
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcc
Q 007703 334 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 378 (592)
Q Consensus 334 iv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv 378 (592)
|||+|+|.||+.-|-..+. .| .++.|+++.+-+
T Consensus 2 VVVvGgG~aG~~AAi~AAr-----~G-------~~VlLiE~~~~l 34 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAIAAAR-----AG-------AKVLLIEKGGFL 34 (428)
T ss_dssp EEEE--SHHHHHHHHHHHH-----TT-------S-EEEE-SSSSS
T ss_pred EEEECccHHHHHHHHHHHH-----CC-------CEEEEEECCccC
Confidence 7999999999888776554 37 478999998765
No 457
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=39.88 E-value=27 Score=37.22 Aligned_cols=31 Identities=26% Similarity=0.453 Sum_probs=24.4
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
.|+|+|||.+|+..|-.|.. .|+ ++.++|+.
T Consensus 4 dV~IVGaG~aGl~~A~~L~~-----~G~-------~v~viE~~ 34 (405)
T PRK05714 4 DLLIVGAGMVGSALALALQG-----SGL-------EVLLLDGG 34 (405)
T ss_pred cEEEECccHHHHHHHHHHhc-----CCC-------EEEEEcCC
Confidence 69999999999999987754 364 56777765
No 458
>PLN02568 polyamine oxidase
Probab=39.85 E-value=18 Score=41.24 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=20.8
Q ss_pred ccceEEEeCcChHHHHHHHHHHHH
Q 007703 330 AEHRFLFLGAGEAGTGIAELIALE 353 (592)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~ 353 (592)
+..+|+|+|||.||+..|..|...
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~ 27 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTS 27 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhc
Confidence 346899999999999999999764
No 459
>PRK14852 hypothetical protein; Provisional
Probab=39.77 E-value=28 Score=42.84 Aligned_cols=38 Identities=21% Similarity=0.153 Sum_probs=33.0
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
.+|+..||+|+|+|..|.-||..|+.+ |+ .+|.++|-+
T Consensus 328 ~kL~~srVlVvGlGGlGs~ia~~LAra-----GV------G~I~L~D~D 365 (989)
T PRK14852 328 RRLLRSRVAIAGLGGVGGIHLMTLART-----GI------GNFNLADFD 365 (989)
T ss_pred HHHhcCcEEEECCcHHHHHHHHHHHHc-----CC------CeEEEEcCC
Confidence 478899999999998888888888764 87 789999987
No 460
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=39.76 E-value=36 Score=38.06 Aligned_cols=34 Identities=15% Similarity=0.367 Sum_probs=27.2
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
.+.+++|+|+|.||+..|..|.. .| .+++++|+.
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~-----~g-------~~V~v~e~~ 175 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNR-----AG-------HTVTVFERE 175 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHH-----cC-------CeEEEEecC
Confidence 45799999999999999988764 25 358888865
No 461
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=39.74 E-value=59 Score=33.77 Aligned_cols=107 Identities=13% Similarity=0.162 Sum_probs=56.2
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhccccCCCCCHHHHhcccC
Q 007703 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 411 (592)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vk 411 (592)
.||.|+|+|..|-.||.-|+. .|.- ...+|+++|+. . +++......|. .....+..|+++.
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~-----~g~~---~~~~I~v~~r~----~---~~~~~l~~~~g--~~~~~~~~e~~~~-- 63 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMIN-----KNIV---SPDQIICSDLN----V---SNLKNASDKYG--ITITTNNNEVANS-- 63 (272)
T ss_pred CeEEEECccHHHHHHHHHHHH-----CCCC---CCceEEEECCC----H---HHHHHHHHhcC--cEEeCCcHHHHhh--
Confidence 379999999999999988764 2531 23468888763 1 11222221121 1112345566553
Q ss_pred CcEEEeccCCCCCCCHHHHHHHHcc-CCCCceEEecCCCCCCCCCCHHHHhcccc
Q 007703 412 PTILIGSSGVGRTFTKEVIEAMASF-NEVKPLILALSNPTSQSECTAEEAYTWSK 465 (592)
Q Consensus 412 PtvLIG~S~~~g~Ft~evv~~Ma~~-~e~rPIIFaLSNPt~~aEct~e~A~~wt~ 465 (592)
.|++| ++-.+ ---++|++.+..+ .+ ..+|..+. |=++-++.-+|.+
T Consensus 64 aDiIi-LavkP-~~~~~vl~~l~~~~~~-~~lvISi~-----AGi~i~~l~~~l~ 110 (272)
T PRK12491 64 ADILI-LSIKP-DLYSSVINQIKDQIKN-DVIVVTIA-----AGKSIKSTENEFD 110 (272)
T ss_pred CCEEE-EEeCh-HHHHHHHHHHHHhhcC-CcEEEEeC-----CCCcHHHHHHhcC
Confidence 56655 33334 2345555555542 23 44666554 3334555555543
No 462
>PRK09897 hypothetical protein; Provisional
Probab=39.71 E-value=35 Score=39.16 Aligned_cols=33 Identities=18% Similarity=0.268 Sum_probs=26.7
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
+|+|+|+|.+|+.+|..|+.. + ..-+|.++|+.
T Consensus 3 ~IAIIGgGp~Gl~~a~~L~~~-----~-----~~l~V~lfEp~ 35 (534)
T PRK09897 3 KIAIVGAGPTGIYTFFSLLQQ-----Q-----TPLSISIFEQA 35 (534)
T ss_pred eEEEECCcHHHHHHHHHHHhc-----C-----CCCcEEEEecC
Confidence 799999999999999999752 2 12479999984
No 463
>PRK08265 short chain dehydrogenase; Provisional
Probab=39.69 E-value=33 Score=34.20 Aligned_cols=37 Identities=22% Similarity=0.284 Sum_probs=24.5
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 328 ~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
++++++++|.||.+ ||...++..+.+ .|. +++++|++
T Consensus 3 ~~~~k~vlItGas~---gIG~~ia~~l~~-~G~-------~V~~~~r~ 39 (261)
T PRK08265 3 GLAGKVAIVTGGAT---LIGAAVARALVA-AGA-------RVAIVDID 39 (261)
T ss_pred CCCCCEEEEECCCC---hHHHHHHHHHHH-CCC-------EEEEEeCC
Confidence 47789999999843 455555555554 363 67888764
No 464
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=39.67 E-value=30 Score=34.24 Aligned_cols=37 Identities=19% Similarity=0.329 Sum_probs=23.6
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 328 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 328 ~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
.+++.++||.||.+ ||...++..+.+ .|. +++++|++
T Consensus 3 ~~~~k~vlVtGas~---gIG~~ia~~l~~-~G~-------~V~~~~r~ 39 (263)
T PRK06200 3 WLHGQVALITGGGS---GIGRALVERFLA-EGA-------RVAVLERS 39 (263)
T ss_pred CCCCCEEEEeCCCc---hHHHHHHHHHHH-CCC-------EEEEEeCC
Confidence 36778999999753 444445555544 363 58888764
No 465
>PRK08013 oxidoreductase; Provisional
Probab=39.60 E-value=34 Score=36.68 Aligned_cols=33 Identities=12% Similarity=0.286 Sum_probs=24.7
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
+-.|+|+|||.+|+..|-.|.. .|+ ++.++|++
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~-----~G~-------~v~viE~~ 35 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQG-----SGL-------RVAVLEQR 35 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhh-----CCC-------EEEEEeCC
Confidence 3479999999999999877654 365 46667654
No 466
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=39.57 E-value=66 Score=34.96 Aligned_cols=99 Identities=19% Similarity=0.218 Sum_probs=63.7
Q ss_pred eEEEe-CcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhcc-ccCCCCCHHHHhccc
Q 007703 333 RFLFL-GAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-EHEPVNNLLDAVKVI 410 (592)
Q Consensus 333 riv~~-GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~-~~~~~~~L~e~V~~v 410 (592)
+||+. |||-.|.-.+.+|+++ | .++.++|. |-+..+ +.+...+-+|-. +-.+..-|.++++..
T Consensus 2 ~iLVtGGAGYIGSHtv~~Ll~~-----G-------~~vvV~DN--L~~g~~-~~v~~~~~~f~~gDi~D~~~L~~vf~~~ 66 (329)
T COG1087 2 KVLVTGGAGYIGSHTVRQLLKT-----G-------HEVVVLDN--LSNGHK-IALLKLQFKFYEGDLLDRALLTAVFEEN 66 (329)
T ss_pred eEEEecCcchhHHHHHHHHHHC-----C-------CeEEEEec--CCCCCH-HHhhhccCceEEeccccHHHHHHHHHhc
Confidence 45555 6888998888887753 5 57888987 334333 334332223332 222224588899999
Q ss_pred CCcEEEec---cCCCC------------CC-CHHHHHHHHccCCCCceEEecC
Q 007703 411 KPTILIGS---SGVGR------------TF-TKEVIEAMASFNEVKPLILALS 447 (592)
Q Consensus 411 kPtvLIG~---S~~~g------------~F-t~evv~~Ma~~~e~rPIIFaLS 447 (592)
||+++|=. +.+|- +. |-..|++|.+++- +.|||.=|
T Consensus 67 ~idaViHFAa~~~VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv-~~~vFSSt 118 (329)
T COG1087 67 KIDAVVHFAASISVGESVQNPLKYYDNNVVGTLNLIEAMLQTGV-KKFIFSST 118 (329)
T ss_pred CCCEEEECccccccchhhhCHHHHHhhchHhHHHHHHHHHHhCC-CEEEEecc
Confidence 99999844 33331 11 5678999999998 99999654
No 467
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=39.48 E-value=33 Score=39.00 Aligned_cols=32 Identities=16% Similarity=0.350 Sum_probs=25.2
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCC
Q 007703 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (592)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 376 (592)
.|+|+|||.||+..|..+.. .| .++.++|+..
T Consensus 6 DVvIIGgGpAGL~AA~~lar-----~g-------~~V~liE~~~ 37 (555)
T TIGR03143 6 DLIIIGGGPAGLSAGIYAGR-----AK-------LDTLIIEKDD 37 (555)
T ss_pred cEEEECCCHHHHHHHHHHHH-----CC-------CCEEEEecCC
Confidence 69999999999999987754 24 4688888653
No 468
>PLN02366 spermidine synthase
Probab=39.45 E-value=60 Score=34.67 Aligned_cols=93 Identities=16% Similarity=0.282 Sum_probs=48.3
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhccccCC--CCCHHHHhc
Q 007703 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEP--VNNLLDAVK 408 (592)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~--~~~L~e~V~ 408 (592)
..||+++|.|..+ +++.++.. -++ +++.+||-+.-+.+--++.++.....+..+.-. ..+-.+.++
T Consensus 92 pkrVLiIGgG~G~--~~rellk~----~~v------~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~ 159 (308)
T PLN02366 92 PKKVLVVGGGDGG--VLREIARH----SSV------EQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLK 159 (308)
T ss_pred CCeEEEEcCCccH--HHHHHHhC----CCC------CeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHh
Confidence 5799999999865 34444322 122 689999988755432112222211111111000 123323333
Q ss_pred cc---CCcEEEeccCC-----CCCCCHHHHHHHHc
Q 007703 409 VI---KPTILIGSSGV-----GRTFTKEVIEAMAS 435 (592)
Q Consensus 409 ~v---kPtvLIG~S~~-----~g~Ft~evv~~Ma~ 435 (592)
.. +=|++|-=+.. ..+||++..+.+.+
T Consensus 160 ~~~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~ 194 (308)
T PLN02366 160 NAPEGTYDAIIVDSSDPVGPAQELFEKPFFESVAR 194 (308)
T ss_pred hccCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHH
Confidence 22 45888764433 23678888888764
No 469
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=39.39 E-value=54 Score=35.26 Aligned_cols=41 Identities=27% Similarity=0.345 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHh
Q 007703 314 VLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQ 357 (592)
Q Consensus 314 ~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~ 357 (592)
.+|-+..-++..-++.+.+.+||-|+|+ |+.++|+..+.+.
T Consensus 21 ~~s~~~~~l~~~~k~v~g~~vLITGgg~---GlGr~ialefa~r 61 (300)
T KOG1201|consen 21 LESLIKLLLPKPLKSVSGEIVLITGGGS---GLGRLIALEFAKR 61 (300)
T ss_pred HHHHHHHhcccchhhccCCEEEEeCCCc---hHHHHHHHHHHHh
Confidence 3333444444566778899999999987 8889999988874
No 470
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=39.32 E-value=33 Score=42.43 Aligned_cols=34 Identities=24% Similarity=0.460 Sum_probs=27.3
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
...+|+|+|||.||+..|..|.. .| .++.++|+.
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr-----~G-------~~VTV~Ek~ 569 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLAR-----AG-------HPVTVFEKK 569 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHH-----CC-------CeEEEEecc
Confidence 35799999999999999998865 36 357888865
No 471
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=39.28 E-value=44 Score=37.57 Aligned_cols=136 Identities=17% Similarity=0.193 Sum_probs=65.9
Q ss_pred HHHHHHHHhcCCC-eeeeeecCCCchHHHHHHHHcCCCceeccCCcchHHHHHH----HHHHHHHHhCCCcccceEEEeC
Q 007703 264 EFMSAVKQNYGEK-VLIQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVLA----GVVAALKLIGGTLAEHRFLFLG 338 (592)
Q Consensus 264 efv~av~~~fGp~-~lIqfEDf~~~~Af~lL~ryr~~~~~FNDDiQGTaaV~LA----gll~Alr~~g~~l~d~riv~~G 338 (592)
...+.++++||-- ..+.| ++-.+.-+.|++... .|++++...+--+++ -+...+......|++.|++++|
T Consensus 268 ~~A~~Le~~fGiP~~~~~~--~Gi~~T~~~Lr~ia~---~~g~~i~~~~e~~I~~e~~~~~~~ld~~~~~L~GKrv~i~~ 342 (466)
T TIGR01282 268 YISRHMEEKYGIPWMEYNF--FGPTKIAESLRKIAE---FFDDEIKEKAEEVIAKYQPAVDAVIAKYRPRLEGKTVMLYV 342 (466)
T ss_pred HHHHHHHHHhCCceEeCCC--CCHHHHHHHHHHHHH---HHCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 3445566777632 22333 555555555544432 234444322211111 1333344456788999999998
Q ss_pred cChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhcc-----ccCCCCCHHHHhcccCCc
Q 007703 339 AGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-----EHEPVNNLLDAVKVIKPT 413 (592)
Q Consensus 339 AGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~-----~~~~~~~L~e~V~~vkPt 413 (592)
.|+=...++.++ ++.|+.. .++-. .....++.....+.... +..+...|++.++..|||
T Consensus 343 g~~~~~~~~~~l-----~ELGmev-------v~~g~----~~~~~~~~~~~~~~~~~~~~i~~~~d~~el~~~i~~~~pD 406 (466)
T TIGR01282 343 GGLRPRHVIGAF-----EDLGMEV-------IGTGY----EFAHNDDYERTTKYMKDGTLIYDDVTHYEFEEFVEKLKPD 406 (466)
T ss_pred CCCcHHHHHHHH-----HHCCCEE-------EEEee----ecCCHHHHHHHHHhcCCCeEEeeCCCHHHHHHHHHHhCCC
Confidence 876666666643 2458732 11100 00000111111111100 111223688888999999
Q ss_pred EEEeccC
Q 007703 414 ILIGSSG 420 (592)
Q Consensus 414 vLIG~S~ 420 (592)
++||-|.
T Consensus 407 l~ig~~~ 413 (466)
T TIGR01282 407 LVGSGIK 413 (466)
T ss_pred EEEecCC
Confidence 9998664
No 472
>PRK06046 alanine dehydrogenase; Validated
Probab=39.24 E-value=1.7e+02 Score=31.06 Aligned_cols=103 Identities=16% Similarity=0.161 Sum_probs=62.6
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhccc----cCCCCCHHH
Q 007703 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE----HEPVNNLLD 405 (592)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~----~~~~~~L~e 405 (592)
.-.++.|+|+|..|...++.+... .++ ++++++|++- ++ .+.+...+... .....++.+
T Consensus 128 ~~~~vgiiG~G~qa~~h~~al~~~----~~i------~~v~v~~r~~----~~---~~~~~~~~~~~~~~~v~~~~~~~~ 190 (326)
T PRK06046 128 DSKVVGIIGAGNQARTQLLALSEV----FDL------EEVRVYDRTK----SS---AEKFVERMSSVVGCDVTVAEDIEE 190 (326)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhh----CCc------eEEEEECCCH----HH---HHHHHHHHHhhcCceEEEeCCHHH
Confidence 357999999999987777666432 233 7899998851 11 22333333211 112357888
Q ss_pred HhcccCCcEEEeccCC-CCCCCHHHHHHHHccCCCCceEEec-CCCCCCCCCCHHH
Q 007703 406 AVKVIKPTILIGSSGV-GRTFTKEVIEAMASFNEVKPLILAL-SNPTSQSECTAEE 459 (592)
Q Consensus 406 ~V~~vkPtvLIG~S~~-~g~Ft~evv~~Ma~~~e~rPIIFaL-SNPt~~aEct~e~ 459 (592)
+++ .|+++-++.. ..+|..+.++ + --.|-++ |+-..+.|+.++-
T Consensus 191 ~l~---aDiVv~aTps~~P~~~~~~l~------~-g~hV~~iGs~~p~~~El~~~~ 236 (326)
T PRK06046 191 ACD---CDILVTTTPSRKPVVKAEWIK------E-GTHINAIGADAPGKQELDPEI 236 (326)
T ss_pred Hhh---CCEEEEecCCCCcEecHHHcC------C-CCEEEecCCCCCccccCCHHH
Confidence 885 7888866543 2467777664 2 3346666 4444679999874
No 473
>PRK07538 hypothetical protein; Provisional
Probab=39.21 E-value=35 Score=36.68 Aligned_cols=20 Identities=25% Similarity=0.398 Sum_probs=16.3
Q ss_pred eEEEeCcChHHHHHHHHHHH
Q 007703 333 RFLFLGAGEAGTGIAELIAL 352 (592)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~ 352 (592)
+|+|+|||.||+..|-.|.+
T Consensus 2 dV~IVGaG~aGl~~A~~L~~ 21 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQ 21 (413)
T ss_pred eEEEECCCHHHHHHHHHHHh
Confidence 68899999999888877654
No 474
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=39.14 E-value=34 Score=35.77 Aligned_cols=31 Identities=19% Similarity=0.295 Sum_probs=24.8
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
.|+|+|||-+|+.+|-.|.+ .| .++.++|+.
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~-----~G-------~~V~vle~~ 32 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAAR-----RG-------LSVTVIERS 32 (365)
T ss_pred CEEEECCCHHHHHHHHHHHH-----CC-------CeEEEEeCC
Confidence 48999999999999988864 25 357888875
No 475
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=39.13 E-value=23 Score=40.31 Aligned_cols=44 Identities=32% Similarity=0.312 Sum_probs=32.3
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCC--ChhhhcCcE-----EEEccCCcccC
Q 007703 332 HRFLFLGAGEAGTGIAELIALEISKQTKA--PVEETRKKI-----CLVDSKGLIVS 380 (592)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~--s~eeA~~~i-----~lvD~~GLv~~ 380 (592)
+||+|+|||-||++.|..|+++ |. +.=||+.++ -..|++|..++
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~-----g~~vt~~ea~~~~GGk~~s~~~~dg~~~E 51 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADA-----GYDVTLYEARDRLGGKVASWRDSDGNHVE 51 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhC-----CCceEEEeccCccCceeeeeecCCCCeee
Confidence 5899999999999999999875 64 445666542 12567776664
No 476
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=39.06 E-value=1.1e+02 Score=31.71 Aligned_cols=82 Identities=13% Similarity=0.119 Sum_probs=46.9
Q ss_pred CcccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcc-cCCCccCCch------hchhhcc-ccC
Q 007703 328 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI-VSSRKDSLQH------FKKPWAH-EHE 398 (592)
Q Consensus 328 ~l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv-~~~R~~~l~~------~k~~fA~-~~~ 398 (592)
+++..+++|.|| |-.|..+++.|+. .|. +++.+|+..-- ...+...+.. .+..|-. +-.
T Consensus 3 ~~~~~~vlVTGatGfiG~~l~~~L~~-----~G~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~ 70 (340)
T PLN02653 3 DPPRKVALITGITGQDGSYLTEFLLS-----KGY-------EVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLS 70 (340)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHH-----CCC-------EEEEEecccccccccchhhhccccccccCceEEEEecCC
Confidence 466789999997 7788888777764 263 57777654210 0000000100 0111111 222
Q ss_pred CCCCHHHHhcccCCcEEEeccCC
Q 007703 399 PVNNLLDAVKVIKPTILIGSSGV 421 (592)
Q Consensus 399 ~~~~L~e~V~~vkPtvLIG~S~~ 421 (592)
+..++.++++..+||++|=+.+.
T Consensus 71 d~~~~~~~~~~~~~d~Vih~A~~ 93 (340)
T PLN02653 71 DASSLRRWLDDIKPDEVYNLAAQ 93 (340)
T ss_pred CHHHHHHHHHHcCCCEEEECCcc
Confidence 23467788888899999988775
No 477
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]
Probab=38.98 E-value=20 Score=43.27 Aligned_cols=116 Identities=23% Similarity=0.388 Sum_probs=68.9
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhccccC---C-CCC
Q 007703 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHE---P-VNN 402 (592)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~---~-~~~ 402 (592)
++|.++++.++|||+.|+-.-+-++. .|+.--+- ..|.+.|-+ +|.++ +|+. |--| |+.+ + ...
T Consensus 426 eKL~~~~~FlVGaGAIGCE~LKN~am-----~Gvg~g~~-g~ItVTDmD-~IEkS---NLnR-QFLF-R~~dVgk~KSe~ 493 (1013)
T KOG2012|consen 426 EKLADQKVFLVGAGAIGCELLKNFAL-----MGVGCGNS-GKITVTDMD-HIEKS---NLNR-QFLF-RPWDVGKPKSEV 493 (1013)
T ss_pred HHHhhCcEEEEccchhhHHHHHhhhh-----eeeccCCC-CceEEeccc-hhhhc---cccc-eeec-cccccCchHHHH
Confidence 67999999999999999876665543 26532221 256666654 33333 2432 1111 2211 1 124
Q ss_pred HHHHhcccCCcEEE-------eccCCCCCCCHHHHHHHHccCCCCceEEecCCCCCCCCCCHHHHhccccCcEEE
Q 007703 403 LLDAVKVIKPTILI-------GSSGVGRTFTKEVIEAMASFNEVKPLILALSNPTSQSECTAEEAYTWSKGRAIF 470 (592)
Q Consensus 403 L~e~V~~vkPtvLI-------G~S~~~g~Ft~evv~~Ma~~~e~rPIIFaLSNPt~~aEct~e~A~~wt~G~aif 470 (592)
-++|+....|++.| |--+ -++|+.+--+.+.- ++=||=|= ||-.|-|+||+|
T Consensus 494 AA~A~~~mNp~l~I~a~~~rvgpeT-E~If~D~Ff~~ld~------VanALDNV---------dAR~YvD~RCv~ 552 (1013)
T KOG2012|consen 494 AAAAARGMNPDLNIIALQNRVGPET-EHIFNDEFFENLDG------VANALDNV---------DARRYVDRRCVY 552 (1013)
T ss_pred HHHHHHhcCCCceeeehhhccCccc-ccccchhHHhhhHH------HHHhhcch---------hhhhhhhhhhhh
Confidence 67889999999987 3333 35788877766532 22234442 567777888877
No 478
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=38.76 E-value=1.4e+02 Score=26.60 Aligned_cols=35 Identities=26% Similarity=0.419 Sum_probs=24.1
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHccCCC-CceEEecCC
Q 007703 411 KPTILIGSSGVGRTFTKEVIEAMASFNEV-KPLILALSN 448 (592)
Q Consensus 411 kPtvLIG~S~~~g~Ft~evv~~Ma~~~e~-rPIIFaLSN 448 (592)
+.|++|++|-.|. |+|+++.+....+. -||| ++++
T Consensus 43 ~~dl~I~iS~SG~--t~e~i~~~~~a~~~g~~iI-~IT~ 78 (119)
T cd05017 43 RKTLVIAVSYSGN--TEETLSAVEQAKERGAKIV-AITS 78 (119)
T ss_pred CCCEEEEEECCCC--CHHHHHHHHHHHHCCCEEE-EEeC
Confidence 5699999999886 99999987533331 3444 5554
No 479
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=38.72 E-value=27 Score=39.93 Aligned_cols=26 Identities=27% Similarity=0.486 Sum_probs=22.3
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHH
Q 007703 327 GTLAEHRFLFLGAGEAGTGIAELIAL 352 (592)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~ 352 (592)
..++++||||+|.|..|+-||..|..
T Consensus 179 ~~f~gKrVlVVG~g~Sg~DIa~el~~ 204 (531)
T PF00743_consen 179 EPFKGKRVLVVGGGNSGADIAVELSR 204 (531)
T ss_dssp GGGTTSEEEEESSSHHHHHHHHHHTT
T ss_pred hhcCCCEEEEEeCCHhHHHHHHHHHH
Confidence 45678999999999999999987754
No 480
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=38.69 E-value=83 Score=35.93 Aligned_cols=97 Identities=20% Similarity=0.156 Sum_probs=62.8
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhcccc-C---CCCCHHHHhc
Q 007703 333 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH-E---PVNNLLDAVK 408 (592)
Q Consensus 333 riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~-~---~~~~L~e~V~ 408 (592)
+|-|+|-|..|.++|.-|+.. |. ++.+.|+. .++ .+++...+++.+ . ...|+.|+++
T Consensus 8 ~IG~IGLG~MG~~mA~nL~~~-----G~-------~V~V~NRt----~~k---~~~l~~~~~~~Ga~~~~~a~s~~e~v~ 68 (493)
T PLN02350 8 RIGLAGLAVMGQNLALNIAEK-----GF-------PISVYNRT----TSK---VDETVERAKKEGNLPLYGFKDPEDFVL 68 (493)
T ss_pred CEEEEeeHHHHHHHHHHHHhC-----CC-------eEEEECCC----HHH---HHHHHHhhhhcCCcccccCCCHHHHHh
Confidence 699999999999999998753 63 67777763 222 223332222211 1 3468999997
Q ss_pred cc-CCcEEEeccCCCCCCCHHHHHHHHcc-CCCCceEEecCCCC
Q 007703 409 VI-KPTILIGSSGVGRTFTKEVIEAMASF-NEVKPLILALSNPT 450 (592)
Q Consensus 409 ~v-kPtvLIG~S~~~g~Ft~evv~~Ma~~-~e~rPIIFaLSNPt 450 (592)
.+ +|+++| ++=..+.-.++|+..+.+. .+ .-||.=+||=.
T Consensus 69 ~l~~~dvIi-~~v~~~~aV~~Vi~gl~~~l~~-G~iiID~sT~~ 110 (493)
T PLN02350 69 SIQKPRSVI-ILVKAGAPVDQTIKALSEYMEP-GDCIIDGGNEW 110 (493)
T ss_pred cCCCCCEEE-EECCCcHHHHHHHHHHHhhcCC-CCEEEECCCCC
Confidence 64 588888 4444555566776555443 35 77999999854
No 481
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=38.60 E-value=67 Score=37.64 Aligned_cols=94 Identities=13% Similarity=0.197 Sum_probs=52.1
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhccccCCCCCHHHHhcccC
Q 007703 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 411 (592)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vk 411 (592)
+||.|+|+|..|..+|..+... |. ..+++.+|++ .++ +...++ +........++.++++.
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~-----G~-----~~~V~~~d~~----~~~---~~~a~~-~g~~~~~~~~~~~~~~~-- 63 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRER-----GL-----AREVVAVDRR----AKS---LELAVS-LGVIDRGEEDLAEAVSG-- 63 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc-----CC-----CCEEEEEECC----hhH---HHHHHH-CCCCCcccCCHHHHhcC--
Confidence 6899999999999999988653 53 2458888874 111 111110 00000122356666653
Q ss_pred CcEEEeccCCCCCCCHHHHHHHHccCCCCceEEecC
Q 007703 412 PTILIGSSGVGRTFTKEVIEAMASFNEVKPLILALS 447 (592)
Q Consensus 412 PtvLIG~S~~~g~Ft~evv~~Ma~~~e~rPIIFaLS 447 (592)
+|++| ++... ...+++++.|+++....-||.-++
T Consensus 64 aDvVi-lavp~-~~~~~vl~~l~~~~~~~~ii~d~~ 97 (735)
T PRK14806 64 ADVIV-LAVPV-LAMEKVLADLKPLLSEHAIVTDVG 97 (735)
T ss_pred CCEEE-ECCCH-HHHHHHHHHHHHhcCCCcEEEEcC
Confidence 66666 44433 356777777765432033444444
No 482
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=38.60 E-value=33 Score=36.27 Aligned_cols=33 Identities=15% Similarity=0.287 Sum_probs=25.8
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
+..|+|+|||.||+..|-.|.+ .|+ ++.++|+.
T Consensus 5 ~~dViIvGgG~aGl~~A~~La~-----~G~-------~V~liE~~ 37 (391)
T PRK08020 5 PTDIAIVGGGMVGAALALGLAQ-----HGF-------SVAVLEHA 37 (391)
T ss_pred cccEEEECcCHHHHHHHHHHhc-----CCC-------EEEEEcCC
Confidence 4579999999999999877653 364 57888875
No 483
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=38.46 E-value=60 Score=34.50 Aligned_cols=101 Identities=18% Similarity=0.198 Sum_probs=55.6
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEcc-------CCcccCCCccCCchhchhhccccCCCCCHH
Q 007703 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS-------KGLIVSSRKDSLQHFKKPWAHEHEPVNNLL 404 (592)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~-------~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~ 404 (592)
.||.|+|||+-|.-.|-.|.++ | . .=.+|.-++ +||...+-.. ........ .+-.
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~-----g-~----~V~~~~R~~~~~~l~~~GL~i~~~~~------~~~~~~~~--~~~~ 62 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKA-----G-H----DVTLLVRSRRLEALKKKGLRIEDEGG------NFTTPVVA--ATDA 62 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhC-----C-C----eEEEEecHHHHHHHHhCCeEEecCCC------cccccccc--ccCh
Confidence 4899999999998888777664 4 1 012333333 3666544321 00111000 0111
Q ss_pred HHhcccCCcEEEeccCCCCCCCHHHHHHHHccCCCCceEEecCCCCCCCC
Q 007703 405 DAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVKPLILALSNPTSQSE 454 (592)
Q Consensus 405 e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~e~rPIIFaLSNPt~~aE 454 (592)
+.. .++|++| ++... -.++++++.+.++.....+|..|-|=-..-|
T Consensus 63 ~~~--~~~Dlvi-v~vKa-~q~~~al~~l~~~~~~~t~vl~lqNG~g~~e 108 (307)
T COG1893 63 EAL--GPADLVI-VTVKA-YQLEEALPSLAPLLGPNTVVLFLQNGLGHEE 108 (307)
T ss_pred hhc--CCCCEEE-EEecc-ccHHHHHHHhhhcCCCCcEEEEEeCCCcHHH
Confidence 111 1466655 22222 4688888888876653557888888776666
No 484
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=38.39 E-value=42 Score=38.93 Aligned_cols=35 Identities=26% Similarity=0.472 Sum_probs=28.1
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCC
Q 007703 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (592)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 376 (592)
...||+|+|+|.||+..|..+... |. ++.++|+..
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~-----G~-------~Vtv~e~~~ 343 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARA-----GV-------QVDVFDRHP 343 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHc-----CC-------cEEEEeCCC
Confidence 579999999999999999888752 63 577787653
No 485
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=38.31 E-value=44 Score=38.08 Aligned_cols=79 Identities=10% Similarity=0.260 Sum_probs=47.1
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhccc---cCCCCCH
Q 007703 327 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE---HEPVNNL 403 (592)
Q Consensus 327 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~---~~~~~~L 403 (592)
..|.+.|++|+|-++-.+|+++.+... .|+. +..++.. .....+.+.+.-+.+... .++...+
T Consensus 301 ~~l~Gkrv~I~gd~~~a~~l~~~L~~E----LGm~-------vv~~g~~---~~~~~~~~~~~~~~~~~~~~i~~D~~ei 366 (513)
T CHL00076 301 QNLTGKKAVVFGDATHAASMTKILARE----MGIR-------VSCAGTY---CKHDAEWFKEQVQGFCDEILITDDHTEV 366 (513)
T ss_pred cccCCCEEEEEcCchHHHHHHHHHHHh----CCCE-------EEEecCc---ccchhHHHHHHHHHhccCcEEecCHHHH
Confidence 678899999999999999999988765 4873 2223321 000000011111111110 1122357
Q ss_pred HHHhcccCCcEEEecc
Q 007703 404 LDAVKVIKPTILIGSS 419 (592)
Q Consensus 404 ~e~V~~vkPtvLIG~S 419 (592)
.+.|+..+||++||.|
T Consensus 367 ~~~I~~~~pdliiGs~ 382 (513)
T CHL00076 367 GDMIARVEPSAIFGTQ 382 (513)
T ss_pred HHHHHhcCCCEEEECc
Confidence 7889999999999966
No 486
>PRK06834 hypothetical protein; Provisional
Probab=38.28 E-value=40 Score=37.77 Aligned_cols=35 Identities=26% Similarity=0.489 Sum_probs=27.3
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCC
Q 007703 330 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 376 (592)
Q Consensus 330 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 376 (592)
.+..|+|+|||.+|+-.|-.|.+ .|+ ++.++|+.-
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~-----~G~-------~v~vlEr~~ 36 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELAL-----AGV-------DVAIVERRP 36 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHH-----CCC-------cEEEEecCC
Confidence 45789999999999999988765 375 466777653
No 487
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=38.22 E-value=2.5e+02 Score=30.50 Aligned_cols=138 Identities=12% Similarity=0.163 Sum_probs=82.8
Q ss_pred HHHHHHHHHHhcCCCeeeeeecCCCchHHHHHHHHcCCCceecc-CCcchHHHHHHHHHHHHHHhC-CCcccceEEEeCc
Q 007703 262 LDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFND-DIQGTASVVLAGVVAALKLIG-GTLAEHRFLFLGA 339 (592)
Q Consensus 262 idefv~av~~~fGp~~lIqfEDf~~~~Af~lL~ryr~~~~~FND-DiQGTaaV~LAgll~Alr~~g-~~l~d~riv~~GA 339 (592)
+.+.+..+ .+| .++++ +-.+ .+.+.+.+.+| .++||.|- |...--.=+|+=++.-.+..| +++++.+|+++|-
T Consensus 90 l~Dtarvl-s~y-~D~iv-iR~~-~~~~~~~~a~~-~~vPVINa~~~~~HPtQaLaDl~Ti~e~~g~~~l~gl~va~vGD 164 (334)
T PRK12562 90 IKDTARVL-GRM-YDGIQ-YRGH-GQEVVETLAEY-AGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLVYAGD 164 (334)
T ss_pred HHHHHHHH-HHh-CCEEE-EECC-chHHHHHHHHh-CCCCEEECCCCCCChHHHHHHHHHHHHHhCCCCcCCcEEEEECC
Confidence 34444443 445 44433 2223 23344555555 47899993 223344556788787777776 4699999999998
Q ss_pred ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhccc-cCC---CCCHHHHhcccCCcEE
Q 007703 340 GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEP---VNNLLDAVKVIKPTIL 415 (592)
Q Consensus 340 GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~-~~~---~~~L~e~V~~vkPtvL 415 (592)
+.- .+++-++.++.+ .|+ ++.++-.+|+--.. + +-+.-+.+++. +.. ..++.|+++. .||+
T Consensus 165 ~~~--~v~~S~~~~~~~-~G~-------~v~~~~P~~~~~~~--~-~~~~~~~~~~~~g~~~~~~~d~~~a~~~--aDvv 229 (334)
T PRK12562 165 ARN--NMGNSMLEAAAL-TGL-------DLRLVAPQACWPEA--S-LVAECSALAQKHGGKITLTEDIAAGVKG--ADFI 229 (334)
T ss_pred CCC--CHHHHHHHHHHH-cCC-------EEEEECCcccCCcH--H-HHHHHHHHHHHcCCeEEEEcCHHHHhCC--CCEE
Confidence 742 477777776665 474 68888887763321 1 11111233332 111 2689999997 8999
Q ss_pred Eecc
Q 007703 416 IGSS 419 (592)
Q Consensus 416 IG~S 419 (592)
.-.+
T Consensus 230 yt~~ 233 (334)
T PRK12562 230 YTDV 233 (334)
T ss_pred EEcC
Confidence 9765
No 488
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=38.20 E-value=88 Score=30.19 Aligned_cols=36 Identities=28% Similarity=0.269 Sum_probs=24.2
Q ss_pred CcccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 328 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 328 ~l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
.+.+.+++|.|| |..|..+++.+++ .| .++++++++
T Consensus 3 ~~~~~~ilItGasg~iG~~l~~~l~~-----~g-------~~V~~~~r~ 39 (251)
T PRK12826 3 DLEGRVALVTGAARGIGRAIAVRLAA-----DG-------AEVIVVDIC 39 (251)
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHHH-----CC-------CEEEEEeCC
Confidence 356779999996 5566666666543 25 368888764
No 489
>TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively.
Probab=38.18 E-value=53 Score=36.80 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=21.6
Q ss_pred CcccceEEEeCcChHHHHHHHHHHH
Q 007703 328 TLAEHRFLFLGAGEAGTGIAELIAL 352 (592)
Q Consensus 328 ~l~d~riv~~GAGsAg~GIA~ll~~ 352 (592)
-|.+.|++|+|-++-.+|+++.+.+
T Consensus 309 ~l~Gkrvai~~~~~~~~~l~~~l~e 333 (461)
T TIGR02931 309 FLADKRVAIYGNPDLVIGLAEFCLD 333 (461)
T ss_pred HhCCCeEEEEeCHHHHHHHHHHHHH
Confidence 4678999999999999999998864
No 490
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=38.00 E-value=28 Score=35.21 Aligned_cols=15 Identities=27% Similarity=0.488 Sum_probs=13.1
Q ss_pred CCccCCCCCHHHHhh
Q 007703 60 RHNKGLAFTEKERDA 74 (592)
Q Consensus 60 ~~NKG~aFt~~ER~~ 74 (592)
-+|++++||.++|.+
T Consensus 65 gL~~dLgFs~edR~e 79 (197)
T COG0529 65 GLNRDLGFSREDRIE 79 (197)
T ss_pred cccCCCCCChHHHHH
Confidence 379999999999964
No 491
>COG0565 LasT rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=37.90 E-value=78 Score=33.13 Aligned_cols=74 Identities=15% Similarity=0.232 Sum_probs=47.2
Q ss_pred ccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhcccc-------CCCC
Q 007703 330 AEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH-------EPVN 401 (592)
Q Consensus 330 ~d~riv~~GA-GsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~-------~~~~ 401 (592)
..-+||++.. ++.++|-+ +.+|.. .|+ +++++|+.+ . .+++.-..+|... .-..
T Consensus 3 ~~i~iVLVep~~~gNIG~v---ARaMKN-fGl------~eL~LV~Pr-------~-~~~eeA~a~A~gA~dile~A~i~~ 64 (242)
T COG0565 3 ENIRIVLVEPSHPGNIGSV---ARAMKN-FGL------SELRLVNPR-------A-GLDEEARALAAGARDILENAKIVD 64 (242)
T ss_pred CccEEEEEcCCCCccHHHH---HHHHHh-CCc------ceEEEECCC-------C-CCCHHHHHHhccchhhhccCeeec
Confidence 3457777754 55566653 344543 598 569998875 2 2445554555321 2236
Q ss_pred CHHHHhcccCCcEEEeccCCCC
Q 007703 402 NLLDAVKVIKPTILIGSSGVGR 423 (592)
Q Consensus 402 ~L~e~V~~vkPtvLIG~S~~~g 423 (592)
||.|+|.. .+.+||+|+-..
T Consensus 65 tL~eAl~d--~~~v~aTtar~r 84 (242)
T COG0565 65 TLEEALAD--CDLVVATTARSR 84 (242)
T ss_pred CHHHHhcC--CCEEEEeccccC
Confidence 99999997 999999997554
No 492
>PRK06815 hypothetical protein; Provisional
Probab=37.87 E-value=2.4e+02 Score=29.73 Aligned_cols=37 Identities=19% Similarity=0.217 Sum_probs=23.0
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCc
Q 007703 331 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 377 (592)
Q Consensus 331 d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GL 377 (592)
|.-|+-+|.|..-.||+.-+... + -.-+|+.|+..|-
T Consensus 170 d~vv~~vG~Gg~~~Gi~~~~k~~-----~-----~~~~vigVep~~~ 206 (317)
T PRK06815 170 DAVFVAVGGGGLISGIATYLKTL-----S-----PKTEIIGCWPANS 206 (317)
T ss_pred CEEEEECcHHHHHHHHHHHHHHh-----C-----CCCEEEEEEeCCC
Confidence 55555555555558888766442 1 1247999988754
No 493
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=37.87 E-value=40 Score=36.80 Aligned_cols=32 Identities=31% Similarity=0.396 Sum_probs=25.9
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccC
Q 007703 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 375 (592)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 375 (592)
-.+||+|||.||+..|..+.+ .| +++.++|+.
T Consensus 4 yDvvIIG~G~aGl~aA~~l~~-----~g-------~~v~lie~~ 35 (460)
T PRK06292 4 YDVIVIGAGPAGYVAARRAAK-----LG-------KKVALIEKG 35 (460)
T ss_pred ccEEEECCCHHHHHHHHHHHH-----CC-------CeEEEEeCC
Confidence 469999999999999987765 25 578889983
No 494
>PLN02342 ornithine carbamoyltransferase
Probab=37.80 E-value=4.1e+02 Score=29.12 Aligned_cols=126 Identities=20% Similarity=0.249 Sum_probs=80.5
Q ss_pred HHHhcCCCeeeeeecCCCchHHHHHHHHcCCCceecc-CCcchHHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHH
Q 007703 269 VKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFND-DIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIA 347 (592)
Q Consensus 269 v~~~fGp~~lIqfEDf~~~~Af~lL~ryr~~~~~FND-DiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAg~GIA 347 (592)
+-.+| .++++ +-.+ .+.+.+.+.+| .++|+.|- |-..-=.=+|+=++.-.+..| +|++.||+++|-+. -++
T Consensus 136 vLs~y-~D~Iv-iR~~-~~~~~~~la~~-~~vPVINA~~~~~HPtQaLaDl~Ti~e~~G-~l~glkva~vGD~~---nva 207 (348)
T PLN02342 136 VLSRY-NDIIM-ARVF-AHQDVLDLAEY-SSVPVINGLTDYNHPCQIMADALTIIEHIG-RLEGTKVVYVGDGN---NIV 207 (348)
T ss_pred HHHHh-CCEEE-EeCC-ChHHHHHHHHh-CCCCEEECCCCCCChHHHHHHHHHHHHHhC-CcCCCEEEEECCCc---hhH
Confidence 34556 55555 2223 33344555555 47899993 333455667888777666666 69999999999874 388
Q ss_pred HHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhcccc-----CCCCCHHHHhcccCCcEEEecc
Q 007703 348 ELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH-----EPVNNLLDAVKVIKPTILIGSS 419 (592)
Q Consensus 348 ~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~-----~~~~~L~e~V~~vkPtvLIG~S 419 (592)
+-++.++.+ .|+ ++.++-.+|+.-. +.....|++. ....++.|+|+. .||+.-.+
T Consensus 208 ~Sli~~~~~-~G~-------~v~~~~P~~~~~~-------~~~~~~a~~~g~~~~~~~~d~~eav~~--aDVvy~~~ 267 (348)
T PLN02342 208 HSWLLLAAV-LPF-------HFVCACPKGYEPD-------AKTVEKARAAGISKIEITNDPAEAVKG--ADVVYTDV 267 (348)
T ss_pred HHHHHHHHH-cCC-------EEEEECCcccccC-------HHHHHHHHHhCCCcEEEEcCHHHHhCC--CCEEEECC
Confidence 888877765 474 5888888776332 1111122211 123689999996 99999875
No 495
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=37.50 E-value=69 Score=33.94 Aligned_cols=116 Identities=14% Similarity=0.230 Sum_probs=64.7
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccCCchhchhhccccCCCCCHHHHhcccC
Q 007703 332 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 411 (592)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vk 411 (592)
+||.++|-|..|--|++.|... +. +..+-.++.|+.. + ..+.++...+.+.+|.|.+. -+
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~-----~~---~~~~l~~V~~~~~----~-------~~~~~~~~~~~~~~l~~ll~-~~ 62 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLAD-----AA---QPCQLAALTRNAA----D-------LPPALAGRVALLDGLPGLLA-WR 62 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcC-----CC---CceEEEEEecCCH----H-------HHHHhhccCcccCCHHHHhh-cC
Confidence 6999999999999999987541 11 0113344555531 1 11223332344578888653 37
Q ss_pred CcEEEeccCCCCCCCHHHHHHHHccCCCCceEEecCCCCCCCCCCHH----HHhccccCcEEEecC
Q 007703 412 PTILIGSSGVGRTFTKEVIEAMASFNEVKPLILALSNPTSQSECTAE----EAYTWSKGRAIFASG 473 (592)
Q Consensus 412 PtvLIG~S~~~g~Ft~evv~~Ma~~~e~rPIIFaLSNPt~~aEct~e----~A~~wt~G~aifAsG 473 (592)
||+++=+.++. ++.+-..+.+.+... ++.+| +...+.-..+ ++-+-.+++..+.||
T Consensus 63 ~DlVVE~A~~~-av~e~~~~iL~~g~d----lvv~S-vGALaD~~~~~~l~~~A~~~g~~i~ipSG 122 (267)
T PRK13301 63 PDLVVEAAGQQ-AIAEHAEGCLTAGLD----MIICS-AGALADDALRARLIAAAEAGGARIRVPAG 122 (267)
T ss_pred CCEEEECCCHH-HHHHHHHHHHhcCCC----EEEEC-hhHhcCHHHHHHHHHHHHhCCCEEEEeCh
Confidence 99999988854 444444444443333 22222 3333322222 333335678888887
No 496
>PRK11761 cysM cysteine synthase B; Provisional
Probab=37.47 E-value=3.9e+02 Score=28.06 Aligned_cols=96 Identities=13% Similarity=0.119 Sum_probs=46.2
Q ss_pred HHhcCCCeeeeeecCCCchHHHHHHHHcCCCceeccCCcchHHHHHHHH-HHH---HHHhCCCcccceEEEeCcChHHHH
Q 007703 270 KQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGV-VAA---LKLIGGTLAEHRFLFLGAGEAGTG 345 (592)
Q Consensus 270 ~~~fGp~~lIqfEDf~~~~Af~lL~ryr~~~~~FNDDiQGTaaV~LAgl-l~A---lr~~g~~l~d~riv~~GAGsAg~G 345 (592)
-+.||.++++.=++-....|.+.-++++.+...|.-++-.......++. --+ +...+.++ |.-|+-+|.|..-.|
T Consensus 105 ~~~~GA~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~n~~~~~~~~~t~~~Ei~eq~~~~~-d~iv~~vG~Gg~~~G 183 (296)
T PRK11761 105 MRAYGAELILVPKEQGMEGARDLALQMQAEGEGKVLDQFANPDNPLAHYETTGPEIWRQTEGRI-THFVSSMGTTGTIMG 183 (296)
T ss_pred HHHcCCEEEEeCCCCChHHHHHHHHHHHhccCCEecCCCCChhhHHHHhhchHHHHHHhcCCCC-CEEEecCCcHHHHHH
Confidence 3458887755432112344555555554322222222222222222221 011 22222233 655666677766678
Q ss_pred HHHHHHHHHHHhcCCChhhhcCcEEEEccCC
Q 007703 346 IAELIALEISKQTKAPVEETRKKICLVDSKG 376 (592)
Q Consensus 346 IA~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 376 (592)
|++-+... + -.-+++.|+..|
T Consensus 184 i~~~lk~~-----~-----~~~kvigVep~~ 204 (296)
T PRK11761 184 VSRYLKEQ-----N-----PAVQIVGLQPEE 204 (296)
T ss_pred HHHHHHHh-----C-----CCCEEEEEecCC
Confidence 88776543 1 125899999865
No 497
>PTZ00367 squalene epoxidase; Provisional
Probab=37.43 E-value=81 Score=36.45 Aligned_cols=30 Identities=17% Similarity=0.204 Sum_probs=23.3
Q ss_pred HHhCCCc---ccceEEEeCcChHHHHHHHHHHH
Q 007703 323 KLIGGTL---AEHRFLFLGAGEAGTGIAELIAL 352 (592)
Q Consensus 323 r~~g~~l---~d~riv~~GAGsAg~GIA~ll~~ 352 (592)
++..+|. .+-+|+|+|||.||+..|-.|.+
T Consensus 22 ~~~~~~~~~~~~~dViIVGaGiaGlalA~aLar 54 (567)
T PTZ00367 22 RLRFKPARTNYDYDVIIVGGSIAGPVLAKALSK 54 (567)
T ss_pred HHccCccccccCccEEEECCCHHHHHHHHHHHh
Confidence 4455665 45689999999999999988764
No 498
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=37.20 E-value=52 Score=35.55 Aligned_cols=42 Identities=33% Similarity=0.366 Sum_probs=27.7
Q ss_pred CCHHHHHHHHccCCCCceEEecCCCCCCCCCCHHHHhccccCcEEEecCC
Q 007703 425 FTKEVIEAMASFNEVKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGS 474 (592)
Q Consensus 425 Ft~evv~~Ma~~~e~rPIIFaLSNPt~~aEct~e~A~~wt~G~aifAsGS 474 (592)
|-+++|++|.+ -=||.=|| ...|=|.+|+..+|+ +-++||=|
T Consensus 150 ~Gk~lV~~~N~----LgIiiDlS---H~s~kt~~Dvl~~s~-~PviaSHS 191 (313)
T COG2355 150 FGKELVREMNE----LGIIIDLS---HLSDKTFWDVLDLSK-APVVASHS 191 (313)
T ss_pred HHHHHHHHHHh----cCCEEEec---ccCCccHHHHHhccC-CceEEecC
Confidence 56788887775 66677776 556777777777764 44555544
No 499
>PRK05868 hypothetical protein; Validated
Probab=37.19 E-value=41 Score=35.91 Aligned_cols=21 Identities=29% Similarity=0.305 Sum_probs=17.2
Q ss_pred ceEEEeCcChHHHHHHHHHHH
Q 007703 332 HRFLFLGAGEAGTGIAELIAL 352 (592)
Q Consensus 332 ~riv~~GAGsAg~GIA~ll~~ 352 (592)
.+|+|+|||.||+..|-.|.+
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~ 22 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGR 22 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHh
Confidence 378999999999988877654
No 500
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=37.16 E-value=1.3e+02 Score=32.13 Aligned_cols=103 Identities=16% Similarity=0.256 Sum_probs=55.1
Q ss_pred HHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcEEEEccCCcccCCCccC-Cchhchhhcc---
Q 007703 320 AALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDS-LQHFKKPWAH--- 395 (592)
Q Consensus 320 ~Alr~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~-l~~~k~~fA~--- 395 (592)
.++......+.+.|++++|-+.-..++++++.. .|+.... +. +....+. ..........
T Consensus 268 ~~~~~~~~~l~g~~~~i~~~~~~~~~~~~~l~e-----~G~~v~~----~~--------~~~~~~~~~~~~~~~~~~~~~ 330 (399)
T cd00316 268 DALADYHEYLGGKKVAIFGDGDLLLALARFLLE-----LGMEVVA----AG--------TTFGHKADYERREELLGEGTE 330 (399)
T ss_pred HHHHHHHHHhcCCEEEEECCCcHHHHHHHHHHH-----CCCEEEE----EE--------eCCCCHHHHHHHHHhcCCCCE
Confidence 444444456788999999998888899876654 4763211 11 1111010 0000000000
Q ss_pred --ccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHccCCCCceEEecCCCC
Q 007703 396 --EHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEVKPLILALSNPT 450 (592)
Q Consensus 396 --~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~e~rPIIFaLSNPt 450 (592)
.......+.+.++..+||.+||-|.. ....+.+ . .|. +.+++|.
T Consensus 331 ~~~~~d~~~~~~~~~~~~pdl~ig~~~~-----~~~~~~~----~-ip~-~~~~~p~ 376 (399)
T cd00316 331 VVDDGDLEELEELIRELKPDLIIGGSKG-----RYIAKKL----G-IPL-VRIGFPI 376 (399)
T ss_pred EEeCCCHHHHHHHHhhcCCCEEEECCcH-----HHHHHHh----C-CCE-EEcCCcc
Confidence 11222457777888889999997752 2333333 3 675 3566664
Done!