BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007704
(592 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DYH|A Chain A, Crystal Structure Of The Keap1 Protein In Complexed With
The N-Terminal Region Of The Nrf2 Transcription Factor
pdb|2Z32|A Chain A, Crystal Structure Of Keap1 Complexed With Prothymosin
Alpha
pdb|3ADE|A Chain A, Crystal Structure Of Keap1 In Complex With Sequestosome-
1P62
Length = 318
Score = 133 bits (334), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 79/243 (32%), Positives = 124/243 (51%), Gaps = 6/243 (2%)
Query: 355 MLNGELYIFGG----GDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATIDNKIFAI 410
++ G LY GG DGN+ + ++ Y+P ++W+ S++ + + ID I+A+
Sbjct: 62 VVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCASMSVPRNRIGVGVIDGHIYAV 121
Query: 411 GGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAE 470
GG +G S VE + + +W ML +R + A LN +LYA GG+DG +NSAE
Sbjct: 122 GGSHGCIHHSSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAE 181
Query: 471 RFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGE 530
+ P + W I MN R + VL+ +YA GG+DG + S+E YD +W
Sbjct: 182 CYYPERNEWRMITPMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVA 241
Query: 531 PMKLSRGYLGAAVVKEAIYVIGGVKNGSEIVDTVERF-KEGQGWEEINSRAIGKRCFMSV 589
PM+ R LG V + IYV+GG +G +D+VE + + W E+ G+
Sbjct: 242 PMRHHRSALGITVHQGKIYVLGGY-DGHTFLDSVECYDPDSDTWSEVTRMTSGRSGVGVA 300
Query: 590 VTV 592
VT+
Sbjct: 301 VTM 303
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 92/192 (47%)
Query: 355 MLNGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATIDNKIFAIGGGN 414
+++G +Y GG G H++VE Y P DEW + + + A ++ ++A+GG +
Sbjct: 113 VIDGHIYAVGGSHGCIHHSSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFD 172
Query: 415 GLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAERFDP 474
G + E + +W M R L+ +YA GGYDG + +NS ER+D
Sbjct: 173 GTNRLNSAECYYPERNEWRMITPMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDV 232
Query: 475 REHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKL 534
WT +A M R + V GK+Y LGG+DG + S+E YDP +W M
Sbjct: 233 ETETWTFVAPMRHHRSALGITVHQGKIYVLGGYDGHTFLDSVECYDPDSDTWSEVTRMTS 292
Query: 535 SRGYLGAAVVKE 546
R +G AV E
Sbjct: 293 GRSGVGVAVTME 304
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 76/174 (43%), Gaps = 6/174 (3%)
Query: 323 EKLLESSDELHLDPSESIYLPMXXXXXXXXXXMLNGELYIFGGGDGNSWHNTVESYSPAN 382
E+ DE HL PM +LN LY GG DG + N+ E Y P
Sbjct: 134 ERYEPERDEWHL------VAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPER 187
Query: 383 DEWTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKR 442
+EW +N + + N I+A GG +G + + VE D++ W M R
Sbjct: 188 NEWRMITPMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMRHHR 247
Query: 443 FALAAAELNGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAV 496
AL G +Y GGYDG+ +++S E +DP W+++ M R +AV
Sbjct: 248 SALGITVHQGKIYVLGGYDGHTFLDSVECYDPDSDTWSEVTRMTSGRSGVGVAV 301
>pdb|1X2J|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
pdb|1X2R|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
Length = 316
Score = 133 bits (334), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 79/243 (32%), Positives = 124/243 (51%), Gaps = 6/243 (2%)
Query: 355 MLNGELYIFGG----GDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATIDNKIFAI 410
++ G LY GG DGN+ + ++ Y+P ++W+ S++ + + ID I+A+
Sbjct: 61 VVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCASMSVPRNRIGVGVIDGHIYAV 120
Query: 411 GGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAE 470
GG +G S VE + + +W ML +R + A LN +LYA GG+DG +NSAE
Sbjct: 121 GGSHGCIHHSSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAE 180
Query: 471 RFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGE 530
+ P + W I MN R + VL+ +YA GG+DG + S+E YD +W
Sbjct: 181 CYYPERNEWRMITPMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVA 240
Query: 531 PMKLSRGYLGAAVVKEAIYVIGGVKNGSEIVDTVERF-KEGQGWEEINSRAIGKRCFMSV 589
PM+ R LG V + IYV+GG +G +D+VE + + W E+ G+
Sbjct: 241 PMRHHRSALGITVHQGKIYVLGGY-DGHTFLDSVECYDPDSDTWSEVTRMTSGRSGVGVA 299
Query: 590 VTV 592
VT+
Sbjct: 300 VTM 302
Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 92/192 (47%)
Query: 355 MLNGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATIDNKIFAIGGGN 414
+++G +Y GG G H++VE Y P DEW + + + A ++ ++A+GG +
Sbjct: 112 VIDGHIYAVGGSHGCIHHSSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFD 171
Query: 415 GLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAERFDP 474
G + E + +W M R L+ +YA GGYDG + +NS ER+D
Sbjct: 172 GTNRLNSAECYYPERNEWRMITPMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDV 231
Query: 475 REHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKL 534
WT +A M R + V GK+Y LGG+DG + S+E YDP +W M
Sbjct: 232 ETETWTFVAPMRHHRSALGITVHQGKIYVLGGYDGHTFLDSVECYDPDSDTWSEVTRMTS 291
Query: 535 SRGYLGAAVVKE 546
R +G AV E
Sbjct: 292 GRSGVGVAVTME 303
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 76/174 (43%), Gaps = 6/174 (3%)
Query: 323 EKLLESSDELHLDPSESIYLPMXXXXXXXXXXMLNGELYIFGGGDGNSWHNTVESYSPAN 382
E+ DE HL PM +LN LY GG DG + N+ E Y P
Sbjct: 133 ERYEPERDEWHL------VAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPER 186
Query: 383 DEWTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKR 442
+EW +N + + N I+A GG +G + + VE D++ W M R
Sbjct: 187 NEWRMITPMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMRHHR 246
Query: 443 FALAAAELNGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAV 496
AL G +Y GGYDG+ +++S E +DP W+++ M R +AV
Sbjct: 247 SALGITVHQGKIYVLGGYDGHTFLDSVECYDPDSDTWSEVTRMTSGRSGVGVAV 300
>pdb|2VPJ|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl12
Length = 301
Score = 128 bits (322), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 75/234 (32%), Positives = 120/234 (51%), Gaps = 6/234 (2%)
Query: 356 LNGELYIFGGGDGNSWHNTVESYSPANDE---WTSRPSLNGTKGSLAGATIDNKIFAIGG 412
L+ +Y+ GG DG S ++VE DE W S +N +G T+ + I+ GG
Sbjct: 61 LHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGG 120
Query: 413 GNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAERF 472
+G + +E D +I +W M R +GV+Y GGYDG +NS E++
Sbjct: 121 FDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKY 180
Query: 473 DPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPM 532
DP +WT + M +R +A+LN +Y +GGFDG+A + S+E Y+ R SW + M
Sbjct: 181 DPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSM 240
Query: 533 KLSRGYLGAAVVKEAIYVIGGVKNGSEIVDTVERFKE-GQGWEEINSRAIGKRC 585
R Y+GA V++ +Y I G +G+ ++ ++E + WE + S +RC
Sbjct: 241 TTPRCYVGATVLRGRLYAIAG-YDGNSLLSSIECYDPIIDSWEVVTSMGT-QRC 292
Score = 128 bits (321), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 118/236 (50%), Gaps = 7/236 (2%)
Query: 357 NGELYIFGG-GDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATIDNKIFAIGGGNG 415
N L + GG G S + VE Y P EW+ PS+ + +A ++ ++I+ IGG +G
Sbjct: 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDG 73
Query: 416 LECFSDVEMLDLDI---GKWIRTRSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAERF 472
S VE LD G W M +R A L ++Y +GG+DG+ S ER+
Sbjct: 74 RSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERY 133
Query: 473 DPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPM 532
DP W+ + +M R L V +G +Y LGG+DG ++ S+E YDP G W + PM
Sbjct: 134 DPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPM 193
Query: 533 KLSRGYLGAAVVKEAIYVIGGVKNGSEIVDTVERFK-EGQGWEEINSRAIGKRCFM 587
R G A++ + IYV+GG +G+ + +VE + W + S RC++
Sbjct: 194 ATKRSGAGVALLNDHIYVVGGF-DGTAHLSSVEAYNIRTDSWTTVTSMTT-PRCYV 247
Score = 119 bits (299), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 96/204 (47%)
Query: 343 PMXXXXXXXXXXMLNGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGAT 402
PM L +Y+ GG DG+ H ++E Y P D+W+ + +
Sbjct: 98 PMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV 157
Query: 403 IDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNGVLYATGGYDG 462
I+ +GG +GL + VE D G W M KR A LN +Y GG+DG
Sbjct: 158 ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDG 217
Query: 463 NEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPR 522
+++S E ++ R WT + +M R VL G+LYA+ G+DG++++ SIE YDP
Sbjct: 218 TAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPI 277
Query: 523 LGSWMSGEPMKLSRGYLGAAVVKE 546
+ SW M R G V++E
Sbjct: 278 IDSWEVVTSMGTQRCDAGVCVLRE 301
>pdb|3VNG|A Chain A, Crystal Structure Of Keap1 In Complex With Synthetic Small
Molecular Based On A Co-crystallization
pdb|3VNH|A Chain A, Crystal Structure Of Keap1 Soaked With Synthetic Small
Molecular
Length = 309
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 78/242 (32%), Positives = 122/242 (50%), Gaps = 6/242 (2%)
Query: 355 MLNGELYIFGG----GDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATIDNKIFAI 410
++ G LY GG DGN+ + ++ Y+P ++W+ ++ + + ID I+A+
Sbjct: 69 VVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAV 128
Query: 411 GGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAE 470
GG +G + VE + + +W ML +R + A LN +LYA GG+DG +NSAE
Sbjct: 129 GGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAE 188
Query: 471 RFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGE 530
+ P + W I MN R + VL+ +YA GG+DG + S+E YD +W
Sbjct: 189 CYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVA 248
Query: 531 PMKLSRGYLGAAVVKEAIYVIGGVKNGSEIVDTVERF-KEGQGWEEINSRAIGKRCFMSV 589
PMK R LG V + IYV+GG +G +D+VE + + W E+ G+
Sbjct: 249 PMKHRRSALGITVHQGRIYVLGGY-DGHTFLDSVECYDPDTDTWSEVTRMTSGRSGVGVA 307
Query: 590 VT 591
VT
Sbjct: 308 VT 309
Score = 115 bits (288), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 95/202 (47%)
Query: 343 PMXXXXXXXXXXMLNGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGAT 402
PM +++G +Y GG G HN+VE Y P DEW + + + A
Sbjct: 108 PMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAV 167
Query: 403 IDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNGVLYATGGYDG 462
++ ++A+GG +G + E + +W +M R L+ +YA GGYDG
Sbjct: 168 LNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDG 227
Query: 463 NEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPR 522
+ +NS ER+D WT +A M RR + V G++Y LGG+DG + S+E YDP
Sbjct: 228 QDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPD 287
Query: 523 LGSWMSGEPMKLSRGYLGAAVV 544
+W M R +G AV
Sbjct: 288 TDTWSEVTRMTSGRSGVGVAVT 309
>pdb|1U6D|X Chain X, Crystal Structure Of The Kelch Domain Of Human Keap1
pdb|2FLU|X Chain X, Crystal Structure Of The Kelch-Neh2 Complex
Length = 308
Score = 127 bits (318), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 78/242 (32%), Positives = 122/242 (50%), Gaps = 6/242 (2%)
Query: 355 MLNGELYIFGG----GDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATIDNKIFAI 410
++ G LY GG DGN+ + ++ Y+P ++W+ ++ + + ID I+A+
Sbjct: 68 VVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAV 127
Query: 411 GGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAE 470
GG +G + VE + + +W ML +R + A LN +LYA GG+DG +NSAE
Sbjct: 128 GGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAE 187
Query: 471 RFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGE 530
+ P + W I MN R + VL+ +YA GG+DG + S+E YD +W
Sbjct: 188 CYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVA 247
Query: 531 PMKLSRGYLGAAVVKEAIYVIGGVKNGSEIVDTVERF-KEGQGWEEINSRAIGKRCFMSV 589
PMK R LG V + IYV+GG +G +D+VE + + W E+ G+
Sbjct: 248 PMKHRRSALGITVHQGRIYVLGGY-DGHTFLDSVECYDPDTDTWSEVTRMTSGRSGVGVA 306
Query: 590 VT 591
VT
Sbjct: 307 VT 308
Score = 115 bits (288), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 95/202 (47%)
Query: 343 PMXXXXXXXXXXMLNGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGAT 402
PM +++G +Y GG G HN+VE Y P DEW + + + A
Sbjct: 107 PMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAV 166
Query: 403 IDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNGVLYATGGYDG 462
++ ++A+GG +G + E + +W +M R L+ +YA GGYDG
Sbjct: 167 LNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDG 226
Query: 463 NEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPR 522
+ +NS ER+D WT +A M RR + V G++Y LGG+DG + S+E YDP
Sbjct: 227 QDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPD 286
Query: 523 LGSWMSGEPMKLSRGYLGAAVV 544
+W M R +G AV
Sbjct: 287 TDTWSEVTRMTSGRSGVGVAVT 308
>pdb|2XN4|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl2
(mayven)
pdb|2XN4|B Chain B, Crystal Structure Of The Kelch Domain Of Human Klhl2
(mayven)
Length = 302
Score = 123 bits (308), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 123/240 (51%), Gaps = 4/240 (1%)
Query: 356 LNGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATIDNKIFAIGGGNG 415
+ G ++ GG +G+ TV+SY P D+WTS ++ + +L A ++ ++A+GG +G
Sbjct: 60 MAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDG 119
Query: 416 LECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNGVLYATGGYD--GNEYMNSAERFD 473
S VE ++ +W M +R ++ + G+LYA GGYD + +++ E ++
Sbjct: 120 STGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYN 179
Query: 474 PREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMK 533
+ WT IA M+ RR + VLN LYA+GG DG + S+EVYDP +W M
Sbjct: 180 ATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMN 239
Query: 534 LSRGYLGAAVVKEAIYVIGGVKNGSEIVDTVERFK-EGQGWEEINSRAIGKRCFMSVVTV 592
+ R G V +YV+GG +GS + +VE + W ++S R + V +
Sbjct: 240 MCRRNAGVCAVNGLLYVVGG-DDGSCNLASVEYYNPTTDKWTVVSSCMSTGRSYAGVTVI 298
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 101/197 (51%), Gaps = 3/197 (1%)
Query: 355 MLNGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATIDNKIFAIGGGN 414
+LNG LY GG DG++ ++VE+Y+ ++EW +N + S+ + ++A+GG +
Sbjct: 106 VLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYD 165
Query: 415 --GLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAERF 472
+C S VE + +W M +R LN +LYA GG+DG S E +
Sbjct: 166 VASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVY 225
Query: 473 DPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGSW-MSGEP 531
DP + W ++A+MN R + +NG LY +GG DGS + S+E Y+P W +
Sbjct: 226 DPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVVSSC 285
Query: 532 MKLSRGYLGAAVVKEAI 548
M R Y G V+ + +
Sbjct: 286 MSTGRSYAGVTVIDKRL 302
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 84/163 (51%), Gaps = 1/163 (0%)
Query: 406 KIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNGVLYATGGYDGNEY 465
K+ + GG + VE D +W + + +R + G+++A GG++G+
Sbjct: 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLR 75
Query: 466 MNSAERFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGS 525
+ + + +DP + WT +ANM RR AVLNG LYA+GGFDGS + S+E Y+ +
Sbjct: 76 VRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNE 135
Query: 526 WMSGEPMKLSRGYLGAAVVKEAIYVIGGVKNGS-EIVDTVERF 567
W PM R +G VV +Y +GG S + + TVE +
Sbjct: 136 WFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECY 178
>pdb|1ZGK|A Chain A, 1.35 Angstrom Structure Of The Kelch Domain Of Keap1
Length = 308
Score = 118 bits (296), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 75/242 (30%), Positives = 118/242 (48%), Gaps = 6/242 (2%)
Query: 355 MLNGELYIFGG----GDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATIDNKIFAI 410
++ G LY GG DGN+ + ++ Y+P ++W+ + + + ID I+A+
Sbjct: 68 VVGGLLYAVGGRNNSPDGNTDSSALDCYNPXTNQWSPCAPXSVPRNRIGVGVIDGHIYAV 127
Query: 411 GGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAE 470
GG +G + VE + + +W L +R + A LN +LYA GG+DG +NSAE
Sbjct: 128 GGSHGCIHHNSVERYEPERDEWHLVAPXLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAE 187
Query: 471 RFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGE 530
+ P + W I N R + VL+ +YA GG+DG + S+E YD +W
Sbjct: 188 CYYPERNEWRXITAXNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVA 247
Query: 531 PMKLSRGYLGAAVVKEAIYVIGGVKNGSEIVDTVERF-KEGQGWEEINSRAIGKRCFMSV 589
P K R LG V + IYV+GG +G +D+VE + + W E+ G+
Sbjct: 248 PXKHRRSALGITVHQGRIYVLGGY-DGHTFLDSVECYDPDTDTWSEVTRXTSGRSGVGVA 306
Query: 590 VT 591
VT
Sbjct: 307 VT 308
>pdb|3II7|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl7
Length = 306
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 88/204 (43%), Gaps = 5/204 (2%)
Query: 375 VESYSPANDEWTSRPSLNGTKGSLAGATIDNKIFAIGGGN-GLECFSDVEMLDLDIGKWI 433
++ Y+ D W S+ + SLA + KI+ GG G E D W
Sbjct: 72 MDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWH 131
Query: 434 RTRSMLQKRFALAAAELNGVLYATGGYDGN----EYMNSAERFDPREHYWTKIANMNRRR 489
SML +R + E NG++Y GG GN +NS E +DP WT++ M R
Sbjct: 132 TKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEAR 191
Query: 490 GCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVVKEAIY 549
H L + K++A+GG +G + ++E YD +L W PM + A V +Y
Sbjct: 192 KNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAVGSIVY 251
Query: 550 VIGGVKNGSEIVDTVERFKEGQGW 573
V+ G + + +E E W
Sbjct: 252 VLAGFQGVGRLGHILEYNTETDKW 275
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 94/219 (42%), Gaps = 21/219 (9%)
Query: 359 ELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATIDNKIFAIGGGN---- 414
+ +FGG S ++P + WT + A DN ++ +GG
Sbjct: 14 RIALFGGSQPQS----CRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPI 69
Query: 415 -GLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNGVLYATGGYD-GNEYMNSAERF 472
++C++ V+ W R +LAA G +Y +GG + GN + E +
Sbjct: 70 KRMDCYNVVK------DSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECY 123
Query: 473 DPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGS----AMVPSIEVYDPRLGSWMS 528
D R W +M +R H + NG +Y GG G+ ++ S EVYDP +W
Sbjct: 124 DTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTE 183
Query: 529 GEPMKLSRGYLGAAVVKEAIYVIGGVKNGSEIVDTVERF 567
PM +R G VK+ I+ +GG +NG +D VE +
Sbjct: 184 LCPMIEARKNHGLVFVKDKIFAVGG-QNGLGGLDNVEYY 221
>pdb|2WOZ|A Chain A, The Novel Beta-Propeller Of The Btb-Kelch Protein Krp1
Provides The Binding Site For Lasp-1 That Is Necessary
For Pseudopodia Extension
Length = 318
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 86/201 (42%), Gaps = 10/201 (4%)
Query: 401 ATIDNKIFAIGGGNGLECFSDVEM------LDLDIGKWIRTRSMLQKRFALAAAELNGVL 454
T N+++ +GG E D + LD +W+ + R E++ +
Sbjct: 53 VTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEVDDKI 112
Query: 455 YATGGYD--GNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGG-FDGSA 511
Y G D ++S +DP W+++ N+ + H++ NG +Y LGG D
Sbjct: 113 YVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKK 172
Query: 512 MVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVVKEAIYVIGGVKNGSEIVDTVERFKEGQ 571
+ +Y+P+ G W PMK R G A+ K I + GGV + +VE F
Sbjct: 173 CTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDG-LSASVEAFDLKT 231
Query: 572 GWEEINSRAIGKRCFMSVVTV 592
E+ + +R +S+V++
Sbjct: 232 NKWEVMTEFPQERSSISLVSL 252
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 81/204 (39%), Gaps = 9/204 (4%)
Query: 359 ELYIFGG--GDGNSWHNTVESY----SPANDEWTSRPSLNGTKGSLAGATIDNKIFAIGG 412
++Y+ GG D + ++SY + EW P L + +D+KI+ + G
Sbjct: 58 QVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAG 117
Query: 413 GN--GLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNGVLYATGG-YDGNEYMNSA 469
+ V D KW +++ K + NG++Y GG D + N
Sbjct: 118 KDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRV 177
Query: 470 ERFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGSWMSG 529
++P++ W +A M R +A+ GK+ GG + S+E +D + W
Sbjct: 178 FIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVM 237
Query: 530 EPMKLSRGYLGAAVVKEAIYVIGG 553
R + + ++Y IGG
Sbjct: 238 TEFPQERSSISLVSLAGSLYAIGG 261
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 47/108 (43%), Gaps = 7/108 (6%)
Query: 357 NGELYIFGG-GDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATIDNKIFAIGGG-- 413
NG +Y GG D N V Y+P +W + T S+ G I I GG
Sbjct: 158 NGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMK-TPRSMFGVAIHKGKIVIAGGVT 216
Query: 414 -NGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNGVLYATGGY 460
+GL + VE DL KW Q+R +++ L G LYA GG+
Sbjct: 217 EDGLS--ASVEAFDLKTNKWEVMTEFPQERSSISLVSLAGSLYAIGGF 262
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 64/155 (41%), Gaps = 3/155 (1%)
Query: 356 LNGELYIFGGGD--GNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATIDNKIFAIGG- 412
++ ++Y+ G D + ++V Y P +W+ +L + + I+ +GG
Sbjct: 108 VDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGK 167
Query: 413 GNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAERF 472
+ +C + V + + G W M R A G + GG + S E F
Sbjct: 168 TDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAF 227
Query: 473 DPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGF 507
D + + W + + R SL L G LYA+GGF
Sbjct: 228 DLKTNKWEVMTEFPQERSSISLVSLAGSLYAIGGF 262
>pdb|4ASC|A Chain A, Crystal Structure Of The Kelch Domain Of Human Kbtbd5
Length = 315
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 64/176 (36%), Gaps = 4/176 (2%)
Query: 382 NDEWTSRPSLNGTKGSLAGATIDNKIFAIGG---GNGLECFSDVEMLDLDIGKWIRTRSM 438
+ EW P L + N I+ +GG +G C V D KW + +
Sbjct: 76 DSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPL 135
Query: 439 LQKRFALAAAELNGVLYATGGYDGN-EYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL 497
+ ++Y GG + + +N +DP++ W ++A M R V
Sbjct: 136 PYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH 195
Query: 498 NGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVVKEAIYVIGG 553
+G++ G + + S EVY W E R L + +Y IGG
Sbjct: 196 DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSLVGTLYAIGG 251
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 54/134 (40%), Gaps = 12/134 (8%)
Query: 360 LYIFGG-GDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATI-DNKIFAIGGGNGLE 417
+Y+ GG G N + Y P EW + T SL GAT+ D +I G
Sbjct: 151 VYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQ-TARSLFGATVHDGRIIVAAGVTDTG 209
Query: 418 CFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNGVLYATGGYDGNEY---------MNS 468
S E+ + KW + Q+R +L+ L G LYA GG+ E +N
Sbjct: 210 LTSSAEVYSITDNKWAPFEAFPQERSSLSLVSLVGTLYAIGGFATLETESGELVPTELND 269
Query: 469 AERFDPREHYWTKI 482
R++ E W +
Sbjct: 270 IWRYNEEEKKWEGV 283
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 63/153 (41%), Gaps = 6/153 (3%)
Query: 360 LYIFGG---GDGNSWHNTVESYSPANDEW-TSRPSLNGTKGSLAGATIDNKIFAIGG-GN 414
+Y+ GG DG ++V Y + +W S P G + +D ++ IGG G+
Sbjct: 101 IYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMD-LVYVIGGKGS 159
Query: 415 GLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAERFDP 474
+C + + + D +W M R A +G + G +SAE +
Sbjct: 160 DRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSI 219
Query: 475 REHYWTKIANMNRRRGCHSLAVLNGKLYALGGF 507
++ W + R SL L G LYA+GGF
Sbjct: 220 TDNKWAPFEAFPQERSSLSLVSLVGTLYAIGGF 252
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 76/195 (38%), Gaps = 19/195 (9%)
Query: 377 SYSPANDE-WTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLE---------CFSDVEMLD 426
+Y PA +E + + S K ++ T +N++F GG E F + LD
Sbjct: 17 AYDPAANECYXASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLD 76
Query: 427 LDIGKWIRTRSMLQKRFALAAAELNGVLYATGGY---DGNEYMNSAERFDPREHYWTKIA 483
+W+ + R E +Y GG DG ++S +D W +
Sbjct: 77 ---SEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESD 133
Query: 484 NMNRRRGCHSLAVLNGKLYALGGFDGS--AMVPSIEVYDPRLGSWMSGEPMKLSRGYLGA 541
+ H++ +Y +GG GS + + VYDP+ W PM+ +R GA
Sbjct: 134 PLPYVVYGHTVLSHMDLVYVIGG-KGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGA 192
Query: 542 AVVKEAIYVIGGVKN 556
V I V GV +
Sbjct: 193 TVHDGRIIVAAGVTD 207
>pdb|2WQ8|A Chain A, Glycan Labelling Using Engineered Variants Of Galactose
Oxidase Obtained By Directed Evolution
Length = 661
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 451 NGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL-NGKLYALGG-FD 508
NG + TGG D + +D W +M RG S A + +G+++ +GG F
Sbjct: 258 NGQIVVTGGNDAKK----TSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSFS 313
Query: 509 GSAMVPSIEVYDPRLGSWMS 528
G + EVY P +W S
Sbjct: 314 GGVFEKNGEVYSPSSKTWTS 333
Score = 35.4 bits (80), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 498 NGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVVKEA-IYVIGGVKN 556
NG++ GG D +YD SW+ G M+++RGY +A + + ++ IGG +
Sbjct: 258 NGQIVVTGGNDAK----KTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSFS 313
Query: 557 G 557
G
Sbjct: 314 G 314
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 54/258 (20%), Positives = 97/258 (37%), Gaps = 44/258 (17%)
Query: 184 DGDDRPLESH-LDMKDVDQDEKSLILMALKELAINH---EHQDFSSTDYEN---ELATGG 236
+GD +P ++ +DMK Q+ L ++ ++ N H+ + S+D N +A+G
Sbjct: 68 NGDPKPPHTYTIDMKTT-QNVNGLSVLPRQDGNQNGWIGRHEVYLSSDGTNWGSPVASG- 125
Query: 237 DRHCSFIGEQMSSEEKIETCSSSRCQSII-----NELIKEVAELKAFKTEQTLKMK---- 287
S+ + + ET + + + + +AE+ F+ +
Sbjct: 126 ----SWFADSTTKYSNFETRPARYVRLVAITEANGQPWTSIAEINVFQASSYTAPQPGLG 181
Query: 288 ----ELEQKLVDAEAEIQRLKEHCLMVQSPNNDTKECMYEKLLESSDELHLDPSESIYLP 343
++ +V A A I+ LM S ND E + +S DPS I
Sbjct: 182 RWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFEGSPGGITLTSS---WDPSTGIV-- 236
Query: 344 MXXXXXXXXXXML--------NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTK 395
M NG++ + GG D Y ++D W P + +
Sbjct: 237 SDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKK----TSLYDSSSDSWIPGPDMQVAR 292
Query: 396 GSLAGATI-DNKIFAIGG 412
G + AT+ D ++F IGG
Sbjct: 293 GYQSSATMSDGRVFTIGG 310
>pdb|2EIC|A Chain A, Crystal Structure Of Galactose Oxidase Mutant W290f
Length = 639
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 451 NGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL-NGKLYALGG-FD 508
NG + TGG D + +D W +M RG S A + +G+++ +GG F
Sbjct: 236 NGQIVVTGGNDAKK----TSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSFS 291
Query: 509 GSAMVPSIEVYDPRLGSWMS 528
G + EVY P +W S
Sbjct: 292 GGVFEKNGEVYSPSSKTWTS 311
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 498 NGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVVKEA-IYVIGGVKN 556
NG++ GG D +YD SW+ G M+++RGY +A + + ++ IGG +
Sbjct: 236 NGQIVVTGGNDAK----KTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSFS 291
Query: 557 G 557
G
Sbjct: 292 G 292
Score = 32.0 bits (71), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 53/258 (20%), Positives = 96/258 (37%), Gaps = 44/258 (17%)
Query: 184 DGDDRPLESH-LDMKDVDQDEKSLILMALKELAINH---EHQDFSSTDYEN---ELATGG 236
+GD +P ++ +DMK Q+ L ++ ++ N H+ + S+D N +A+G
Sbjct: 46 NGDPKPPHTYTIDMKTT-QNVNGLSMLPRQDGNQNGWIGRHEVYLSSDGTNWGSPVASG- 103
Query: 237 DRHCSFIGEQMSSEEKIETCSSSRCQSII-----NELIKEVAELKAFKTEQTLKMK---- 287
S+ + + ET + + + + +AE+ F+ +
Sbjct: 104 ----SWFADSTTKYSNFETRPARYVRLVAITEANGQPWTSIAEINVFQASSYTAPQPGLG 159
Query: 288 ----ELEQKLVDAEAEIQRLKEHCLMVQSPNNDTKECMYEKLLESSDELHLDPSESIYLP 343
++ +V A A I+ LM S ND + +S DPS I
Sbjct: 160 RWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSS---WDPSTGIV-- 214
Query: 344 MXXXXXXXXXXML--------NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTK 395
M NG++ + GG D Y ++D W P + +
Sbjct: 215 SDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKK----TSLYDSSSDSWIPGPDMQVAR 270
Query: 396 GSLAGATI-DNKIFAIGG 412
G + AT+ D ++F IGG
Sbjct: 271 GYQSSATMSDGRVFTIGG 288
>pdb|2EIB|A Chain A, Crystal Structure Of Galactose Oxidase, W290h Mutant
Length = 639
Score = 36.2 bits (82), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 498 NGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVVKEA-IYVIGGVKN 556
NG++ GG D +YD SW+ G M+++RGY +A + + ++ IGG +
Sbjct: 236 NGQIVVTGGNDAK----KTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSHS 291
Query: 557 G 557
G
Sbjct: 292 G 292
Score = 32.0 bits (71), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 54/265 (20%), Positives = 98/265 (36%), Gaps = 44/265 (16%)
Query: 184 DGDDRPLESH-LDMKDVDQDEKSLILMALKELAINH---EHQDFSSTDYEN---ELATGG 236
+GD +P ++ +DMK Q+ L ++ ++ N H+ + S+D N +A+G
Sbjct: 46 NGDPKPPHTYTIDMKTT-QNVNGLSMLPRQDGNQNGWIGRHEVYLSSDGTNWGSPVASG- 103
Query: 237 DRHCSFIGEQMSSEEKIETCSSSRCQSII-----NELIKEVAELKAFKTEQTLKMK---- 287
S+ + + ET + + + + +AE+ F+ +
Sbjct: 104 ----SWFADSTTKYSNFETRPARYVRLVAITEANGQPWTSIAEINVFQASSYTAPQPGLG 159
Query: 288 ----ELEQKLVDAEAEIQRLKEHCLMVQSPNNDTKECMYEKLLESSDELHLDPSESIYLP 343
++ +V A A I+ LM S ND + +S DPS I
Sbjct: 160 RWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSS---WDPSTGIV-- 214
Query: 344 MXXXXXXXXXXML--------NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTK 395
M NG++ + GG D Y ++D W P + +
Sbjct: 215 SDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKK----TSLYDSSSDSWIPGPDMQVAR 270
Query: 396 GSLAGATI-DNKIFAIGGGNGLECF 419
G + AT+ D ++F IGG + F
Sbjct: 271 GYQSSATMSDGRVFTIGGSHSGGVF 295
>pdb|2EID|A Chain A, Galactose Oxidase W290g Mutant
Length = 639
Score = 35.8 bits (81), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 498 NGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVVKEA-IYVIGGVKN 556
NG++ GG D +YD SW+ G M+++RGY +A + + ++ IGG +
Sbjct: 236 NGQIVVTGGNDAK----KTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSGS 291
Query: 557 G 557
G
Sbjct: 292 G 292
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 53/258 (20%), Positives = 96/258 (37%), Gaps = 44/258 (17%)
Query: 184 DGDDRPLESH-LDMKDVDQDEKSLILMALKELAINH---EHQDFSSTDYEN---ELATGG 236
+GD +P ++ +DMK Q+ L ++ ++ N H+ + S+D N +A+G
Sbjct: 46 NGDPKPPHTYTIDMKTT-QNVNGLSMLPRQDGNQNGWIGRHEVYLSSDGTNWGSPVASG- 103
Query: 237 DRHCSFIGEQMSSEEKIETCSSSRCQSII-----NELIKEVAELKAFKTEQTLKMK---- 287
S+ + + ET + + + + +AE+ F+ +
Sbjct: 104 ----SWFADSTTKYSNFETRPARYVRLVAITEANGQPWTSIAEINVFQASSYTAPQPGLG 159
Query: 288 ----ELEQKLVDAEAEIQRLKEHCLMVQSPNNDTKECMYEKLLESSDELHLDPSESIYLP 343
++ +V A A I+ LM S ND + +S DPS I
Sbjct: 160 RWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSS---WDPSTGIV-- 214
Query: 344 MXXXXXXXXXXML--------NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTK 395
M NG++ + GG D Y ++D W P + +
Sbjct: 215 SDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKK----TSLYDSSSDSWIPGPDMQVAR 270
Query: 396 GSLAGATI-DNKIFAIGG 412
G + AT+ D ++F IGG
Sbjct: 271 GYQSSATMSDGRVFTIGG 288
>pdb|1T2X|A Chain A, Glactose Oxidase C383s Mutant Identified By Directed
Evolution
Length = 639
Score = 35.4 bits (80), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 498 NGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVVKEA-IYVIGGVKN 556
NG++ GG D +YD SW+ G M+++RGY +A + + ++ IGG +
Sbjct: 236 NGQIVVTGGNDAK----KTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWS 291
Query: 557 G 557
G
Sbjct: 292 G 292
Score = 32.0 bits (71), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 53/258 (20%), Positives = 96/258 (37%), Gaps = 44/258 (17%)
Query: 184 DGDDRPLESH-LDMKDVDQDEKSLILMALKELAINH---EHQDFSSTDYEN---ELATGG 236
+GD +P ++ +DMK Q+ L ++ ++ N H+ + S+D N +A+G
Sbjct: 46 NGDPKPPHTYTIDMKTT-QNVNGLSMLPRQDGNQNGWIGRHEVYLSSDGTNWGSPVASG- 103
Query: 237 DRHCSFIGEQMSSEEKIETCSSSRCQSII-----NELIKEVAELKAFKTEQTLKMK---- 287
S+ + + ET + + + + +AE+ F+ +
Sbjct: 104 ----SWFADSTTKYSNFETRPARYVRLVAITEANGQPWTSIAEINVFQASSYTAPQPGLG 159
Query: 288 ----ELEQKLVDAEAEIQRLKEHCLMVQSPNNDTKECMYEKLLESSDELHLDPSESIYLP 343
++ +V A A I+ LM S ND + +S DPS I
Sbjct: 160 RWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSS---WDPSTGIV-- 214
Query: 344 MXXXXXXXXXXML--------NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTK 395
M NG++ + GG D Y ++D W P + +
Sbjct: 215 SDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKK----TSLYDSSSDSWIPGPDMQVAR 270
Query: 396 GSLAGATI-DNKIFAIGG 412
G + AT+ D ++F IGG
Sbjct: 271 GYQSSATMSDGRVFTIGG 288
>pdb|2EIE|A Chain A, Crystal Structure Of Galactose Oxidase Complexed With
Azide
pdb|1GOF|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|1GOG|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|1GOH|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|2JKX|A Chain A, Galactose Oxidase. Matgo. Copper Free, Expressed In Pichia
Pastoris.
pdb|2VZ1|A Chain A, Premat-Galactose Oxidase
pdb|2VZ3|A Chain A, Bleached Galactose Oxidase
Length = 639
Score = 35.4 bits (80), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 498 NGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVVKEA-IYVIGGVKN 556
NG++ GG D +YD SW+ G M+++RGY +A + + ++ IGG +
Sbjct: 236 NGQIVVTGGNDAK----KTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWS 291
Query: 557 G 557
G
Sbjct: 292 G 292
Score = 32.0 bits (71), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 53/258 (20%), Positives = 96/258 (37%), Gaps = 44/258 (17%)
Query: 184 DGDDRPLESH-LDMKDVDQDEKSLILMALKELAINH---EHQDFSSTDYEN---ELATGG 236
+GD +P ++ +DMK Q+ L ++ ++ N H+ + S+D N +A+G
Sbjct: 46 NGDPKPPHTYTIDMKTT-QNVNGLSMLPRQDGNQNGWIGRHEVYLSSDGTNWGSPVASG- 103
Query: 237 DRHCSFIGEQMSSEEKIETCSSSRCQSII-----NELIKEVAELKAFKTEQTLKMK---- 287
S+ + + ET + + + + +AE+ F+ +
Sbjct: 104 ----SWFADSTTKYSNFETRPARYVRLVAITEANGQPWTSIAEINVFQASSYTAPQPGLG 159
Query: 288 ----ELEQKLVDAEAEIQRLKEHCLMVQSPNNDTKECMYEKLLESSDELHLDPSESIYLP 343
++ +V A A I+ LM S ND + +S DPS I
Sbjct: 160 RWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSS---WDPSTGIV-- 214
Query: 344 MXXXXXXXXXXML--------NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTK 395
M NG++ + GG D Y ++D W P + +
Sbjct: 215 SDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKK----TSLYDSSSDSWIPGPDMQVAR 270
Query: 396 GSLAGATI-DNKIFAIGG 412
G + AT+ D ++F IGG
Sbjct: 271 GYQSSATMSDGRVFTIGG 288
>pdb|1K3I|A Chain A, Crystal Structure Of The Precursor Of Galactose Oxidase
Length = 656
Score = 35.4 bits (80), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 498 NGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVVKEA-IYVIGGVKN 556
NG++ GG D +YD SW+ G M+++RGY +A + + ++ IGG +
Sbjct: 253 NGQIVVTGGNDAK----KTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWS 308
Query: 557 G 557
G
Sbjct: 309 G 309
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 52/256 (20%), Positives = 95/256 (37%), Gaps = 40/256 (15%)
Query: 184 DGDDRPLESH-LDMKDVDQDEKSLILMALKELAINH---EHQDFSSTDYEN---ELATGG 236
+GD +P ++ +DMK Q+ L ++ ++ N H+ + S+D N +A+G
Sbjct: 63 NGDPKPPHTYTIDMKTT-QNVNGLSMLPRQDGNQNGWIGRHEVYLSSDGTNWGSPVASG- 120
Query: 237 DRHCSFIGEQMSSEEKIETCSSSRCQSII-----NELIKEVAELKAFKTEQTLKMK---- 287
S+ + + ET + + + + +AE+ F+ +
Sbjct: 121 ----SWFADSTTKYSNFETRPARYVRLVAITEANGQPWTSIAEINVFQASSYTAPQPGLG 176
Query: 288 ----ELEQKLVDAEAEIQRLKEHCLMVQSPNNDTKECMYEKLLESSDELHLDPSESIYLP 343
++ +V A A I+ LM S ND + +S DPS I
Sbjct: 177 RWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSS---WDPSTGIVSD 233
Query: 344 MXXXXXXXXXXML------NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGS 397
NG++ + GG D Y ++D W P + +G
Sbjct: 234 RTVTVTKHDMFXPGISMDGNGQIVVTGGNDAKK----TSLYDSSSDSWIPGPDMQVARGY 289
Query: 398 LAGATI-DNKIFAIGG 412
+ AT+ D ++F IGG
Sbjct: 290 QSSATMSDGRVFTIGG 305
>pdb|3SYJ|A Chain A, Crystal Structure Of The Haemophilus Influenzae Hap
Adhesin
Length = 1011
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 62 NYTDRKLHGIFEAASPGMMNINPYGWTDGSERTSYPAQVQIRVRMQCQPLNEEKFKPIIA 121
+Y + +LH A+P M N G T S+RT YP +V+I Q +++K +
Sbjct: 115 DYHNPRLHKFVTEAAPIDMTSNMNGSTY-SDRTKYPERVRIGSGRQFWRNDQDKGDQVAG 173
Query: 122 ANYY 125
A +Y
Sbjct: 174 AYHY 177
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,833,112
Number of Sequences: 62578
Number of extensions: 760868
Number of successful extensions: 1829
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1691
Number of HSP's gapped (non-prelim): 72
length of query: 592
length of database: 14,973,337
effective HSP length: 104
effective length of query: 488
effective length of database: 8,465,225
effective search space: 4131029800
effective search space used: 4131029800
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)