Query 007704
Match_columns 592
No_of_seqs 368 out of 2222
Neff 7.5
Searched_HMMs 46136
Date Thu Mar 28 14:12:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007704.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007704hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10539 Dev_Cell_Death: Devel 100.0 3.8E-63 8.3E-68 435.9 12.6 129 18-146 1-130 (130)
2 smart00767 DCD DCD is a plant 100.0 4.7E-63 1E-67 432.5 12.4 132 16-148 1-132 (132)
3 KOG4441 Proteins containing BT 100.0 1.4E-42 3.1E-47 386.7 29.1 258 332-591 304-567 (571)
4 PHA02713 hypothetical protein; 100.0 9.5E-40 2.1E-44 364.9 28.2 244 332-579 275-543 (557)
5 KOG4441 Proteins containing BT 100.0 3.1E-39 6.7E-44 359.9 27.7 235 355-590 282-520 (571)
6 PLN02153 epithiospecifier prot 100.0 1.6E-37 3.6E-42 328.0 31.5 235 344-578 19-293 (341)
7 PLN02193 nitrile-specifier pro 100.0 4.1E-36 9E-41 329.9 32.6 235 344-579 162-420 (470)
8 PHA03098 kelch-like protein; P 100.0 7.1E-36 1.5E-40 333.9 30.0 233 348-581 285-523 (534)
9 PHA02713 hypothetical protein; 100.0 8.6E-36 1.9E-40 333.1 30.2 230 360-591 260-510 (557)
10 TIGR03548 mutarot_permut cycli 100.0 2.8E-35 6.1E-40 308.7 30.0 246 346-592 2-302 (323)
11 TIGR03547 muta_rot_YjhT mutatr 100.0 4E-35 8.7E-40 310.3 30.2 244 343-591 3-319 (346)
12 PHA02790 Kelch-like protein; P 100.0 9.7E-35 2.1E-39 319.9 29.1 210 353-576 267-477 (480)
13 PLN02153 epithiospecifier prot 100.0 9.5E-34 2.1E-38 299.3 28.6 221 349-569 77-338 (341)
14 PLN02193 nitrile-specifier pro 100.0 4.6E-33 9.9E-38 305.8 30.0 222 348-570 219-468 (470)
15 TIGR03548 mutarot_permut cycli 100.0 2.3E-33 5.1E-38 294.1 26.1 220 342-562 57-320 (323)
16 KOG1230 Protein containing rep 100.0 3.6E-34 7.8E-39 290.9 17.7 237 340-576 59-347 (521)
17 PRK14131 N-acetylneuraminic ac 100.0 1.1E-32 2.4E-37 294.9 29.6 246 341-591 22-341 (376)
18 TIGR03547 muta_rot_YjhT mutatr 100.0 1.3E-32 2.8E-37 291.1 27.9 226 343-568 48-344 (346)
19 PRK14131 N-acetylneuraminic ac 100.0 1.1E-31 2.3E-36 287.4 27.7 233 343-575 69-374 (376)
20 PHA03098 kelch-like protein; P 100.0 1.6E-30 3.5E-35 290.7 26.5 229 359-591 252-485 (534)
21 KOG4693 Uncharacterized conser 100.0 1.1E-30 2.4E-35 252.6 20.6 246 346-591 12-301 (392)
22 KOG0379 Kelch repeat-containin 100.0 6.9E-30 1.5E-34 280.5 26.0 238 343-580 56-312 (482)
23 KOG4693 Uncharacterized conser 100.0 1.6E-30 3.4E-35 251.5 17.6 213 344-556 75-313 (392)
24 PHA02790 Kelch-like protein; P 100.0 2.7E-29 5.8E-34 276.8 24.3 187 331-530 289-478 (480)
25 KOG4152 Host cell transcriptio 99.9 9E-26 2E-30 234.1 16.5 248 342-592 27-331 (830)
26 KOG0379 Kelch repeat-containin 99.9 1.2E-24 2.6E-29 239.2 22.9 202 389-591 55-273 (482)
27 KOG1230 Protein containing rep 99.9 4.7E-23 1E-27 210.2 18.8 203 389-591 61-304 (521)
28 KOG4152 Host cell transcriptio 99.9 6.9E-22 1.5E-26 205.5 17.4 225 343-568 77-361 (830)
29 COG3055 Uncharacterized protei 99.7 2.2E-15 4.8E-20 152.8 19.1 221 346-568 81-372 (381)
30 COG3055 Uncharacterized protei 99.6 4.6E-14 1E-18 143.3 20.8 242 343-590 32-346 (381)
31 KOG2437 Muskelin [Signal trans 99.6 4.8E-16 1E-20 162.2 6.3 234 343-576 256-541 (723)
32 KOG2437 Muskelin [Signal trans 99.3 4.3E-13 9.2E-18 140.4 4.1 177 392-569 258-470 (723)
33 PF13964 Kelch_6: Kelch motif 99.1 1.1E-10 2.4E-15 87.8 6.5 49 347-395 1-50 (50)
34 PF13964 Kelch_6: Kelch motif 99.1 2.4E-10 5.1E-15 86.0 6.4 49 394-442 1-50 (50)
35 PF01344 Kelch_1: Kelch motif; 98.8 4.2E-09 9.2E-14 77.9 4.9 46 347-392 1-47 (47)
36 PF01344 Kelch_1: Kelch motif; 98.8 5.3E-09 1.2E-13 77.4 5.3 46 394-439 1-47 (47)
37 PF13415 Kelch_3: Galactose ox 98.8 1.3E-08 2.9E-13 76.1 6.0 47 357-403 1-49 (49)
38 PF13415 Kelch_3: Galactose ox 98.8 1.5E-08 3.4E-13 75.8 5.8 47 451-497 1-49 (49)
39 PF13418 Kelch_4: Galactose ox 98.7 1.6E-08 3.4E-13 75.6 4.2 47 347-393 1-49 (49)
40 PF07646 Kelch_2: Kelch motif; 98.7 5.2E-08 1.1E-12 72.9 6.4 46 347-392 1-49 (49)
41 PF07646 Kelch_2: Kelch motif; 98.7 6.3E-08 1.4E-12 72.5 6.3 46 441-486 1-49 (49)
42 PF13418 Kelch_4: Galactose ox 98.6 4.3E-08 9.2E-13 73.3 4.5 47 441-487 1-49 (49)
43 smart00612 Kelch Kelch domain. 98.6 1.1E-07 2.3E-12 69.7 5.3 47 359-405 1-47 (47)
44 smart00612 Kelch Kelch domain. 98.6 1.1E-07 2.5E-12 69.6 5.1 47 406-452 1-47 (47)
45 PF07250 Glyoxal_oxid_N: Glyox 98.5 4.1E-06 8.9E-11 83.8 15.5 153 419-586 45-215 (243)
46 PLN02772 guanylate kinase 98.4 1.4E-06 3E-11 92.4 11.2 83 346-430 23-110 (398)
47 TIGR01640 F_box_assoc_1 F-box 98.4 7.6E-05 1.6E-09 74.4 22.9 192 373-570 14-228 (230)
48 PLN02772 guanylate kinase 98.4 2E-06 4.3E-11 91.2 10.7 84 440-525 23-111 (398)
49 PF13854 Kelch_5: Kelch motif 98.3 1.2E-06 2.6E-11 63.3 5.3 39 344-382 1-41 (42)
50 PF07250 Glyoxal_oxid_N: Glyox 98.3 4E-05 8.7E-10 76.8 17.6 149 374-535 47-211 (243)
51 PF13854 Kelch_5: Kelch motif 98.2 3.4E-06 7.3E-11 61.0 5.1 39 438-476 1-41 (42)
52 TIGR01640 F_box_assoc_1 F-box 98.1 0.00045 9.8E-09 68.8 19.9 159 420-580 14-188 (230)
53 PF03089 RAG2: Recombination a 97.7 0.00075 1.6E-08 67.7 14.3 152 407-558 41-232 (337)
54 PF03089 RAG2: Recombination a 97.5 0.01 2.3E-07 59.7 19.3 190 359-550 40-280 (337)
55 PF13360 PQQ_2: PQQ-like domai 97.3 0.17 3.7E-06 49.9 24.6 183 354-574 33-237 (238)
56 PF07893 DUF1668: Protein of u 97.2 0.018 4E-07 61.1 17.2 119 403-532 75-217 (342)
57 PF07893 DUF1668: Protein of u 97.1 0.022 4.8E-07 60.5 17.2 122 356-488 75-220 (342)
58 PRK11138 outer membrane biogen 97.0 0.15 3.2E-06 55.1 22.8 190 352-575 64-282 (394)
59 PRK00809 hypothetical protein; 96.5 0.013 2.9E-07 54.1 8.6 97 22-120 5-112 (144)
60 PRK11138 outer membrane biogen 96.5 0.5 1.1E-05 51.0 22.2 187 350-575 113-320 (394)
61 PF08450 SGL: SMP-30/Gluconola 96.5 0.74 1.6E-05 46.0 22.0 200 357-589 11-231 (246)
62 TIGR03866 PQQ_ABC_repeats PQQ- 96.0 0.98 2.1E-05 45.4 20.2 142 359-526 2-149 (300)
63 TIGR03300 assembly_YfgL outer 95.9 2.2 4.8E-05 45.5 23.6 188 351-575 59-267 (377)
64 PRK04792 tolB translocation pr 95.9 2.3 4.9E-05 46.9 23.8 188 373-576 242-431 (448)
65 PF13360 PQQ_2: PQQ-like domai 95.8 2.1 4.6E-05 41.9 24.9 174 373-576 3-200 (238)
66 TIGR03300 assembly_YfgL outer 95.8 2.2 4.7E-05 45.5 22.7 185 352-575 100-305 (377)
67 PF12768 Rax2: Cortical protei 95.8 0.54 1.2E-05 48.5 17.0 117 408-531 2-130 (281)
68 cd00200 WD40 WD40 domain, foun 95.6 2 4.4E-05 41.6 20.1 181 357-570 20-207 (289)
69 KOG0310 Conserved WD40 repeat- 95.6 0.93 2E-05 48.9 18.1 185 357-576 79-273 (487)
70 PRK04792 tolB translocation pr 95.5 3.9 8.5E-05 45.1 23.8 190 372-576 197-389 (448)
71 PF12768 Rax2: Cortical protei 95.5 0.23 5.1E-06 51.1 13.1 119 455-578 2-130 (281)
72 PRK00178 tolB translocation pr 95.4 3.4 7.4E-05 45.0 23.0 182 373-570 223-406 (430)
73 TIGR02800 propeller_TolB tol-p 95.3 5 0.00011 43.2 24.1 196 357-571 200-398 (417)
74 PRK04922 tolB translocation pr 95.2 4.4 9.4E-05 44.4 22.9 194 357-570 214-411 (433)
75 PRK05137 tolB translocation pr 95.2 4.9 0.00011 44.0 23.2 205 357-577 212-420 (435)
76 PF03178 CPSF_A: CPSF A subuni 95.1 1.4 3.1E-05 46.0 18.1 138 405-554 42-191 (321)
77 cd00094 HX Hemopexin-like repe 95.1 1.3 2.7E-05 43.0 16.3 142 352-525 11-178 (194)
78 PRK00178 tolB translocation pr 94.9 6.1 0.00013 43.0 22.9 145 420-577 223-371 (430)
79 cd00200 WD40 WD40 domain, foun 94.8 4.2 9.1E-05 39.3 20.1 181 357-570 62-249 (289)
80 KOG2055 WD40 repeat protein [G 94.7 1.7 3.8E-05 46.7 16.8 184 357-570 224-417 (514)
81 PF08450 SGL: SMP-30/Gluconola 94.6 2.6 5.7E-05 42.0 17.7 178 351-552 43-244 (246)
82 KOG0310 Conserved WD40 repeat- 94.6 2.6 5.6E-05 45.6 17.9 173 355-556 120-301 (487)
83 PRK04922 tolB translocation pr 94.5 7.6 0.00016 42.5 22.6 146 419-577 227-376 (433)
84 PF02191 OLF: Olfactomedin-lik 94.5 3.3 7.2E-05 42.0 18.0 183 357-552 30-237 (250)
85 TIGR02800 propeller_TolB tol-p 94.3 9.2 0.0002 41.1 22.9 161 403-577 199-362 (417)
86 PRK05137 tolB translocation pr 94.2 11 0.00023 41.3 22.8 150 372-530 181-330 (435)
87 PTZ00421 coronin; Provisional 94.1 12 0.00026 41.8 23.9 193 357-574 87-295 (493)
88 cd00094 HX Hemopexin-like repe 94.0 3 6.6E-05 40.4 16.1 143 399-570 11-175 (194)
89 cd00216 PQQ_DH Dehydrogenases 93.9 13 0.00029 41.4 23.2 120 350-482 54-192 (488)
90 PF03178 CPSF_A: CPSF A subuni 93.3 3.5 7.7E-05 43.0 16.5 149 420-582 2-172 (321)
91 KOG2055 WD40 repeat protein [G 93.2 1.1 2.4E-05 48.1 12.1 151 404-576 224-385 (514)
92 KOG0286 G-protein beta subunit 93.0 12 0.00026 38.4 22.4 193 343-569 94-302 (343)
93 TIGR03866 PQQ_ABC_repeats PQQ- 93.0 6.9 0.00015 39.1 17.7 138 406-570 2-145 (300)
94 PF09910 DUF2139: Uncharacteri 92.9 8 0.00017 39.9 17.1 160 348-522 37-230 (339)
95 PLN00181 protein SPA1-RELATED; 92.5 11 0.00025 44.6 21.0 142 404-570 587-738 (793)
96 PRK03629 tolB translocation pr 92.4 20 0.00042 39.3 23.3 192 371-577 177-371 (429)
97 PRK04043 tolB translocation pr 92.2 20 0.00044 39.1 23.6 183 373-570 213-400 (419)
98 PF05096 Glu_cyclase_2: Glutam 92.0 2.3 4.9E-05 43.3 12.2 108 446-570 49-157 (264)
99 PRK03629 tolB translocation pr 92.0 22 0.00047 38.9 24.2 183 373-570 223-406 (429)
100 KOG0291 WD40-repeat-containing 92.0 28 0.00061 40.1 22.0 211 344-582 303-520 (893)
101 PRK11028 6-phosphogluconolacto 91.9 18 0.00039 37.7 19.8 146 359-524 3-158 (330)
102 PRK02889 tolB translocation pr 91.6 24 0.00051 38.6 23.1 196 357-570 206-403 (427)
103 PF05096 Glu_cyclase_2: Glutam 91.6 3.3 7.2E-05 42.1 12.8 107 403-525 54-160 (264)
104 PLN00181 protein SPA1-RELATED; 91.4 16 0.00035 43.3 20.6 178 357-569 494-689 (793)
105 PF02897 Peptidase_S9_N: Proly 91.3 22 0.00048 38.3 20.1 210 357-576 134-363 (414)
106 COG1520 FOG: WD40-like repeat 90.9 25 0.00054 37.5 20.3 152 354-528 65-225 (370)
107 smart00284 OLF Olfactomedin-li 90.9 20 0.00044 36.4 18.8 184 357-551 34-241 (255)
108 PF02897 Peptidase_S9_N: Proly 90.8 27 0.00058 37.7 21.6 192 372-576 201-411 (414)
109 PRK02889 tolB translocation pr 90.5 30 0.00065 37.8 21.1 189 373-576 176-367 (427)
110 PTZ00420 coronin; Provisional 89.5 44 0.00095 38.1 21.8 148 358-523 87-249 (568)
111 PRK01742 tolB translocation pr 89.4 30 0.00064 37.8 19.1 177 357-555 214-392 (429)
112 smart00284 OLF Olfactomedin-li 89.2 28 0.0006 35.4 16.9 171 404-587 34-225 (255)
113 PF10282 Lactonase: Lactonase, 89.0 33 0.00072 36.2 21.5 197 362-576 3-231 (345)
114 KOG1332 Vesicle coat complex C 88.7 16 0.00035 36.6 14.4 101 453-578 176-296 (299)
115 PF02191 OLF: Olfactomedin-lik 88.2 31 0.00066 35.0 16.7 154 343-505 64-237 (250)
116 KOG0266 WD40 repeat-containing 88.1 47 0.001 36.7 20.1 185 357-570 214-409 (456)
117 PF08268 FBA_3: F-box associat 87.7 6.5 0.00014 35.2 10.5 81 448-529 2-87 (129)
118 PRK13684 Ycf48-like protein; P 87.4 42 0.00091 35.4 19.5 172 357-554 142-322 (334)
119 KOG1036 Mitotic spindle checkp 87.3 28 0.00062 35.9 15.5 131 373-524 35-165 (323)
120 TIGR02658 TTQ_MADH_Hv methylam 86.2 51 0.0011 35.2 21.0 74 357-434 57-142 (352)
121 KOG4378 Nuclear protein COP1 [ 85.7 9.8 0.00021 41.6 11.8 87 469-570 189-280 (673)
122 KOG0316 Conserved WD40 repeat- 84.4 27 0.00058 35.0 13.2 143 357-525 28-176 (307)
123 PF13088 BNR_2: BNR repeat-lik 84.0 36 0.00077 34.2 15.1 192 357-550 58-275 (275)
124 cd00216 PQQ_DH Dehydrogenases 83.7 52 0.0011 36.6 17.4 117 399-528 56-191 (488)
125 KOG0316 Conserved WD40 repeat- 83.5 48 0.001 33.3 14.5 132 420-570 39-173 (307)
126 PF08268 FBA_3: F-box associat 82.5 15 0.00033 32.8 10.3 80 496-576 3-87 (129)
127 PTZ00421 coronin; Provisional 82.5 89 0.0019 35.0 19.5 152 358-528 138-296 (493)
128 TIGR03075 PQQ_enz_alc_DH PQQ-d 82.3 30 0.00064 39.1 14.8 117 400-528 65-197 (527)
129 PF14870 PSII_BNR: Photosynthe 81.8 68 0.0015 33.5 16.1 184 347-554 103-295 (302)
130 PF14870 PSII_BNR: Photosynthe 81.7 71 0.0015 33.3 20.9 195 352-578 66-270 (302)
131 PLN02919 haloacid dehalogenase 80.6 1.5E+02 0.0033 36.5 25.1 146 404-570 694-888 (1057)
132 PF09910 DUF2139: Uncharacteri 80.3 78 0.0017 32.9 17.3 127 418-551 76-219 (339)
133 PRK11028 6-phosphogluconolacto 79.8 80 0.0017 32.7 24.0 190 373-583 102-320 (330)
134 PRK04043 tolB translocation pr 79.4 1E+02 0.0022 33.7 20.7 149 420-578 213-366 (419)
135 PRK10115 protease 2; Provision 79.3 1.4E+02 0.0029 35.1 24.8 214 351-578 175-403 (686)
136 PLN03215 ascorbic acid mannose 79.0 81 0.0018 33.9 15.8 96 429-533 189-305 (373)
137 PF12217 End_beta_propel: Cata 78.9 79 0.0017 32.2 20.8 207 349-555 76-334 (367)
138 KOG0646 WD40 repeat protein [G 78.4 39 0.00084 36.8 13.0 59 350-415 84-145 (476)
139 COG1520 FOG: WD40-like repeat 78.4 97 0.0021 32.9 19.1 195 357-569 111-319 (370)
140 COG4257 Vgb Streptogramin lyas 77.2 54 0.0012 33.7 12.9 116 399-530 194-313 (353)
141 PRK02268 hypothetical protein; 76.9 5.9 0.00013 36.4 5.7 100 36-146 20-136 (141)
142 TIGR03075 PQQ_enz_alc_DH PQQ-d 75.8 39 0.00084 38.2 13.1 116 447-575 65-197 (527)
143 PTZ00420 coronin; Provisional 75.2 1.6E+02 0.0034 33.7 20.1 148 359-529 139-300 (568)
144 PF01878 EVE: EVE domain; Int 75.1 4.3 9.2E-05 37.2 4.4 96 48-145 36-143 (143)
145 PLN02919 haloacid dehalogenase 72.0 2.3E+02 0.005 35.0 19.3 106 405-525 752-891 (1057)
146 PRK01742 tolB translocation pr 71.7 1.6E+02 0.0034 32.1 21.4 143 373-529 184-331 (429)
147 KOG0272 U4/U6 small nuclear ri 70.9 1.6E+02 0.0035 31.9 15.4 110 450-579 313-426 (459)
148 KOG0289 mRNA splicing factor [ 69.7 1.4E+02 0.003 32.5 14.4 123 357-497 358-484 (506)
149 PLN03215 ascorbic acid mannose 69.6 1.7E+02 0.0036 31.6 16.4 96 382-486 189-305 (373)
150 KOG1036 Mitotic spindle checkp 69.3 94 0.002 32.3 12.6 128 420-570 35-163 (323)
151 PRK10115 protease 2; Provision 67.7 2.5E+02 0.0054 32.9 23.6 207 357-576 137-353 (686)
152 PRK13684 Ycf48-like protein; P 66.1 1.8E+02 0.0039 30.6 22.7 189 357-578 99-297 (334)
153 COG4880 Secreted protein conta 65.9 1.4E+02 0.0031 32.5 13.5 198 350-578 379-599 (603)
154 KOG2321 WD40 repeat protein [G 64.9 44 0.00095 37.5 9.8 75 438-525 130-208 (703)
155 KOG0281 Beta-TrCP (transducin 64.5 71 0.0015 33.7 10.8 169 355-555 204-379 (499)
156 KOG1898 Splicing factor 3b, su 62.8 2.5E+02 0.0053 34.2 15.8 159 418-589 851-1025(1205)
157 KOG0289 mRNA splicing factor [ 61.6 2.5E+02 0.0054 30.7 16.3 137 397-553 350-494 (506)
158 COG0823 TolB Periplasmic compo 61.5 99 0.0021 33.9 12.1 149 373-530 218-367 (425)
159 KOG0296 Angio-associated migra 61.4 2.3E+02 0.005 30.2 15.9 101 404-524 75-180 (399)
160 KOG2321 WD40 repeat protein [G 60.5 57 0.0012 36.6 9.7 119 343-478 129-261 (703)
161 PF02239 Cytochrom_D1: Cytochr 60.0 2.4E+02 0.0053 30.2 14.7 133 373-524 16-160 (369)
162 KOG0649 WD40 repeat protein [G 59.8 2E+02 0.0044 29.1 13.9 149 383-552 99-263 (325)
163 KOG1898 Splicing factor 3b, su 59.7 2.9E+02 0.0062 33.6 15.6 167 369-546 849-1030(1205)
164 KOG0315 G-protein beta subunit 57.2 2.3E+02 0.0049 28.9 16.6 142 404-570 51-197 (311)
165 KOG0305 Anaphase promoting com 56.6 3.3E+02 0.007 30.5 15.2 106 396-521 218-330 (484)
166 PLN00033 photosystem II stabil 54.6 3.2E+02 0.0069 29.8 23.0 196 351-577 140-364 (398)
167 PF14583 Pectate_lyase22: Olig 53.5 1.3E+02 0.0027 32.6 10.8 134 371-508 166-303 (386)
168 TIGR03074 PQQ_membr_DH membran 52.5 4.6E+02 0.01 31.2 16.3 34 445-484 188-223 (764)
169 PF10282 Lactonase: Lactonase, 52.5 3E+02 0.0065 28.9 22.5 164 398-582 147-338 (345)
170 KOG2111 Uncharacterized conser 51.9 3.1E+02 0.0067 28.8 13.2 149 357-526 58-216 (346)
171 PF12329 TMF_DNA_bd: TATA elem 50.6 58 0.0013 26.4 6.1 43 263-305 12-54 (74)
172 KOG3637 Vitronectin receptor, 49.9 2.6E+02 0.0056 34.4 14.0 149 348-497 211-392 (1030)
173 KOG0318 WD40 repeat stress pro 49.8 2.3E+02 0.0049 31.7 12.1 104 357-476 454-561 (603)
174 KOG0278 Serine/threonine kinas 48.6 3.1E+02 0.0068 27.9 12.3 139 419-576 164-308 (334)
175 KOG0286 G-protein beta subunit 48.1 3.4E+02 0.0074 28.2 19.4 100 404-524 108-219 (343)
176 COG4946 Uncharacterized protei 47.6 4.4E+02 0.0094 29.3 17.2 154 354-530 232-398 (668)
177 KOG0274 Cdc4 and related F-box 47.2 4.8E+02 0.01 29.6 18.5 166 373-570 311-482 (537)
178 KOG0266 WD40 repeat-containing 46.2 4.4E+02 0.0096 29.0 21.6 106 404-527 214-323 (456)
179 KOG0299 U3 snoRNP-associated p 46.2 4.4E+02 0.0096 29.0 17.5 131 354-510 210-349 (479)
180 KOG4378 Nuclear protein COP1 [ 45.7 3.7E+02 0.0081 30.0 12.8 31 443-478 212-242 (673)
181 PHA02681 ORF089 virion membran 44.0 28 0.0006 28.8 3.2 27 127-153 45-71 (92)
182 KOG0278 Serine/threonine kinas 43.6 2.3E+02 0.005 28.8 10.1 123 373-510 165-290 (334)
183 KOG0647 mRNA export protein (c 42.8 2.6E+02 0.0057 29.1 10.6 135 357-509 83-220 (347)
184 PHA02902 putative IMV membrane 42.5 26 0.00056 27.5 2.7 43 106-149 27-69 (70)
185 PF06433 Me-amine-dh_H: Methyl 42.4 1.5E+02 0.0032 31.5 9.2 201 357-570 47-277 (342)
186 COG3386 Gluconolactonase [Carb 41.5 4.4E+02 0.0095 27.6 19.1 176 373-570 47-243 (307)
187 KOG1332 Vesicle coat complex C 41.2 4E+02 0.0087 27.1 13.7 102 406-531 176-296 (299)
188 PF14298 DUF4374: Domain of un 40.7 4.8E+02 0.01 28.7 12.9 62 418-480 365-429 (435)
189 KOG0270 WD40 repeat-containing 39.5 5.5E+02 0.012 28.2 14.7 172 359-556 257-441 (463)
190 KOG0265 U5 snRNP-specific prot 38.5 4.2E+02 0.0092 27.6 11.3 61 404-480 58-125 (338)
191 PF14583 Pectate_lyase22: Olig 38.1 5.5E+02 0.012 27.8 15.0 74 357-439 46-121 (386)
192 KOG0296 Angio-associated migra 37.9 5.4E+02 0.012 27.6 17.1 142 357-524 75-222 (399)
193 KOG0279 G protein beta subunit 37.0 4.9E+02 0.011 26.9 18.1 177 354-555 71-253 (315)
194 PF06433 Me-amine-dh_H: Methyl 36.5 2.6E+02 0.0057 29.7 9.9 191 357-570 106-320 (342)
195 PF12217 End_beta_propel: Cata 36.0 5E+02 0.011 26.6 17.3 202 354-555 22-259 (367)
196 PF08662 eIF2A: Eukaryotic tra 35.7 3.7E+02 0.0081 25.7 10.4 89 451-554 71-163 (194)
197 KOG3545 Olfactomedin and relat 35.2 4.9E+02 0.011 26.4 14.4 186 375-587 12-219 (249)
198 PRK01029 tolB translocation pr 34.8 6.3E+02 0.014 27.5 21.4 189 373-578 211-412 (428)
199 COG3074 Uncharacterized protei 34.5 1.7E+02 0.0037 23.5 6.1 44 262-305 17-60 (79)
200 COG3823 Glutamine cyclotransfe 34.3 3.7E+02 0.008 26.8 9.7 97 400-506 51-148 (262)
201 KOG1523 Actin-related protein 33.8 4.2E+02 0.0092 27.9 10.5 96 373-480 32-137 (361)
202 KOG2048 WD40 repeat protein [G 33.3 8.1E+02 0.018 28.3 21.2 213 341-582 63-290 (691)
203 PF13088 BNR_2: BNR repeat-lik 33.3 4.9E+02 0.011 25.8 19.8 199 381-582 28-255 (275)
204 KOG0643 Translation initiation 32.9 5.7E+02 0.012 26.4 14.2 196 357-570 104-319 (327)
205 KOG1523 Actin-related protein 32.8 6.1E+02 0.013 26.7 11.5 101 419-528 31-138 (361)
206 KOG0640 mRNA cleavage stimulat 32.8 4.1E+02 0.0089 27.9 10.2 147 358-525 184-338 (430)
207 KOG0274 Cdc4 and related F-box 32.7 7.8E+02 0.017 27.9 17.9 130 420-570 311-441 (537)
208 COG4257 Vgb Streptogramin lyas 31.3 6.2E+02 0.013 26.3 18.2 181 374-578 125-314 (353)
209 PF04102 SlyX: SlyX; InterPro 31.0 2.4E+02 0.0053 22.4 6.8 51 261-311 2-52 (69)
210 PF05377 FlaC_arch: Flagella a 30.4 1.7E+02 0.0036 22.5 5.3 41 265-305 2-42 (55)
211 KOG0772 Uncharacterized conser 29.3 8.6E+02 0.019 27.4 12.9 206 361-588 182-418 (641)
212 TIGR02338 gimC_beta prefoldin, 29.3 1.9E+02 0.0042 25.1 6.6 46 258-303 62-107 (110)
213 PRK01029 tolB translocation pr 29.2 7.8E+02 0.017 26.8 14.2 60 420-483 351-411 (428)
214 KOG0649 WD40 repeat protein [G 29.2 6.3E+02 0.014 25.7 14.0 65 357-434 126-192 (325)
215 KOG3545 Olfactomedin and relat 29.0 6.2E+02 0.014 25.6 15.7 181 357-551 30-235 (249)
216 PF08662 eIF2A: Eukaryotic tra 28.9 5.2E+02 0.011 24.7 10.4 66 357-431 71-136 (194)
217 PF07734 FBA_1: F-box associat 28.6 4.7E+02 0.01 24.1 14.8 80 401-482 2-90 (164)
218 PRK15422 septal ring assembly 28.3 2.2E+02 0.0048 23.5 6.0 45 261-305 16-60 (79)
219 COG0823 TolB Periplasmic compo 27.9 6.8E+02 0.015 27.4 11.9 148 420-578 218-368 (425)
220 KOG0305 Anaphase promoting com 27.1 6.4E+02 0.014 28.2 11.4 137 357-510 312-454 (484)
221 PF07433 DUF1513: Protein of u 27.0 7.5E+02 0.016 25.9 15.3 158 391-553 1-180 (305)
222 COG0656 ARA1 Aldo/keto reducta 26.5 21 0.00045 36.9 -0.2 54 95-151 213-268 (280)
223 PRK00736 hypothetical protein; 25.8 3E+02 0.0066 21.9 6.5 45 263-307 5-49 (68)
224 PRK02888 nitrous-oxide reducta 25.6 1.1E+03 0.024 27.4 14.1 51 514-570 296-351 (635)
225 KOG0291 WD40-repeat-containing 25.4 1.2E+03 0.025 27.6 21.3 140 398-555 310-456 (893)
226 PF07734 FBA_1: F-box associat 24.8 5.5E+02 0.012 23.6 14.0 81 448-529 2-90 (164)
227 KOG0272 U4/U6 small nuclear ri 24.5 9.5E+02 0.021 26.3 11.9 132 356-508 313-451 (459)
228 PRK04325 hypothetical protein; 24.0 3.2E+02 0.0069 22.2 6.4 47 261-307 7-53 (74)
229 KOG1538 Uncharacterized conser 24.0 1.2E+03 0.026 27.2 16.3 49 357-414 24-74 (1081)
230 KOG1240 Protein kinase contain 23.9 8.3E+02 0.018 30.6 12.0 94 466-570 1172-1273(1431)
231 KOG1901 Uncharacterized high-g 23.7 1.4E+02 0.0031 33.2 5.5 92 53-150 342-440 (487)
232 PRK04406 hypothetical protein; 23.6 2.1E+02 0.0047 23.3 5.3 45 261-305 9-53 (75)
233 KOG0301 Phospholipase A2-activ 23.5 1.2E+03 0.026 27.1 15.8 29 357-390 24-52 (745)
234 KOG3881 Uncharacterized conser 23.5 9.6E+02 0.021 26.0 12.4 146 358-523 161-321 (412)
235 PF10779 XhlA: Haemolysin XhlA 23.1 3.5E+02 0.0077 21.5 6.5 45 261-305 4-48 (71)
236 KOG0263 Transcription initiati 22.7 6E+02 0.013 29.6 10.3 60 404-475 588-649 (707)
237 KOG1577 Aldo/keto reductase fa 22.6 17 0.00036 37.8 -1.6 51 95-148 234-286 (300)
238 PF06005 DUF904: Protein of un 22.6 2.8E+02 0.006 22.4 5.7 34 261-294 16-49 (72)
239 COG3823 Glutamine cyclotransfe 22.5 5.1E+02 0.011 25.8 8.4 102 443-554 47-149 (262)
240 KOG2264 Exostosin EXT1L [Signa 22.4 4.5E+02 0.0097 29.8 8.8 47 259-305 103-149 (907)
241 PRK00846 hypothetical protein; 22.3 3.1E+02 0.0068 22.6 6.0 53 259-311 9-61 (77)
242 cd00225 API3 Ascaris pepsin in 21.9 6.5E+02 0.014 23.4 8.7 10 400-409 106-115 (159)
243 PF15525 DUF4652: Domain of un 21.9 7.5E+02 0.016 24.1 12.0 73 417-489 85-162 (200)
244 TIGR02658 TTQ_MADH_Hv methylam 21.8 9.9E+02 0.022 25.5 18.7 65 498-570 259-330 (352)
245 COG4398 Uncharacterized protei 21.4 74 0.0016 32.8 2.6 41 12-58 317-357 (389)
246 KOG0318 WD40 repeat stress pro 21.4 1.2E+03 0.026 26.3 17.3 100 450-570 453-560 (603)
247 KOG1240 Protein kinase contain 21.2 1.6E+03 0.034 28.3 13.6 94 420-524 1173-1275(1431)
248 PF14781 BBS2_N: Ciliary BBSom 21.0 6.5E+02 0.014 23.1 10.7 66 499-577 64-135 (136)
249 PLN00033 photosystem II stabil 20.8 1.1E+03 0.024 25.6 21.5 176 353-553 184-389 (398)
250 PF08232 Striatin: Striatin fa 20.8 2.4E+02 0.0052 25.7 5.6 47 258-304 27-73 (134)
251 PF13815 Dzip-like_N: Iguana/D 20.6 3.6E+02 0.0077 23.8 6.6 43 264-306 74-116 (118)
252 KOG0639 Transducin-like enhanc 20.4 8.5E+02 0.018 27.4 10.3 32 498-534 476-507 (705)
253 PRK02793 phi X174 lysis protei 20.1 4E+02 0.0086 21.5 6.2 46 261-306 6-51 (72)
No 1
>PF10539 Dev_Cell_Death: Development and cell death domain; InterPro: IPR013989 The DCD (Development and Cell Death) domain is found in plant proteins involved in development and cell death. The DCD domain is an ~130 amino acid long stretch that contains several mostly invariable motifs. These include a FGLP and a LFL motif at the N terminus and a PAQV and a PLxE motif towards the C terminus of the domain. The DCD domain is present in proteins with different architectures. Some of these proteins contain additional recognizable motifs, like the KELCH repeats or the ParB domain []. Biological studies indicate a role of these proteins in phytohormone response, embryo development and programmed cell death by pathogens or ozone. The predicted secondary structure of the DCD domain is mostly composed of beta strands and confined by an alpha-helix at the N- and at the C terminus []. Proteins known to contain a DCD domain are listed below: Carrot B2 protein. Pea Gda-1 protein. Soybean N-rich protein (NRP).
Probab=100.00 E-value=3.8e-63 Score=435.95 Aligned_cols=129 Identities=56% Similarity=1.046 Sum_probs=127.6
Q ss_pred cceEEEeecCCChHHHhhhccccCCccCccchhccCCCCeEEEEecCCCeEeeEEEeccCCCccccCCCCC-CCCCCCCC
Q 007704 18 LGGVIFGCKKSTIKECLAKQLFGLPAQHFLYVRKVDPGLPLFLFNYTDRKLHGIFEAASPGMMNINPYGWT-DGSERTSY 96 (592)
Q Consensus 18 ~~g~if~c~~~t~~e~~~~~~fgl~~~~~~~v~~i~~g~~lfl~~~~~~~l~g~~~a~s~g~~~~~~~a~~-~~~~~~~~ 96 (592)
|||||||||++|++|||+++|||||+.++++|++||||||||||||++|+|||||||+|+|+|||+|+||+ +|+.+++|
T Consensus 1 lgG~IF~Cn~~T~~ECf~~~lFGLP~~~~~~V~~I~pG~~LFLfn~~~r~L~GifeA~S~G~~ni~p~Af~~~~~~~~~f 80 (130)
T PF10539_consen 1 LGGFIFMCNNKTKPECFRRQLFGLPAGHKDFVKKIKPGMPLFLFNYSDRKLYGIFEATSDGGMNIEPYAFSGSGSGESPF 80 (130)
T ss_pred CceEEEEECCCCHHHHHhcccccCChhhhhHHheeCCCCEEEEEEcCCCEEEEEEEecCCCccCcChhhhCCCCCCCccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999 78899999
Q ss_pred CceEEEEEeeeecCCCCCcchhHHHhcccCCCCCCCCCCHHHHHHHHHhh
Q 007704 97 PAQVQIRVRMQCQPLNEEKFKPIIAANYYTPHHFWFELDHSQASKLIALL 146 (592)
Q Consensus 97 paqv~~~~~~~~~pl~e~~~~~~i~~n~~~~~~f~~~l~~~q~~~l~~lf 146 (592)
||||||+|+++|+||+|++||+||+||||.++||+||||++||++|++||
T Consensus 81 PAQVrf~i~~~C~PL~E~~fk~aI~~Ny~~~~kF~~eLs~~Qv~~L~~LF 130 (130)
T PF10539_consen 81 PAQVRFRIRWDCPPLPESQFKPAIKDNYYDKNKFRFELSHQQVRKLLSLF 130 (130)
T ss_pred ceEEEEEEeeeeecCCHHHHHHHHHHhCCCCCcccCcCCHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999998
No 2
>smart00767 DCD DCD is a plant specific domain in proteins involved in development and programmed cell death. The domain is shared by several proteins in the Arabidopsis and the rice genomes, which otherwise show a different protein architecture. Biological studies indicate a role of these proteins in phytohormone response, embryo development and programmed cell death by pathogens or ozone.
Probab=100.00 E-value=4.7e-63 Score=432.51 Aligned_cols=132 Identities=48% Similarity=0.901 Sum_probs=127.5
Q ss_pred CccceEEEeecCCChHHHhhhccccCCccCccchhccCCCCeEEEEecCCCeEeeEEEeccCCCccccCCCCCCCCCCCC
Q 007704 16 SYLGGVIFGCKKSTIKECLAKQLFGLPAQHFLYVRKVDPGLPLFLFNYTDRKLHGIFEAASPGMMNINPYGWTDGSERTS 95 (592)
Q Consensus 16 ~~~~g~if~c~~~t~~e~~~~~~fgl~~~~~~~v~~i~~g~~lfl~~~~~~~l~g~~~a~s~g~~~~~~~a~~~~~~~~~ 95 (592)
++|||+|||||++|++|||+++|||||+.++++|++||||||||||||++|+|||||||+|+|+|||+|+||.+.. .++
T Consensus 1 ~~lgG~IF~Cn~~T~~Ecf~~~lFGLP~~~~~~V~~IkpG~~LFLfn~~~r~L~GifeA~S~G~~ni~p~Af~~~~-~s~ 79 (132)
T smart00767 1 ETLGGYIFMCNNDTKEECFRRQLFGLPRGYRDFVRNIKPGLPLFLYNYDTRKLHGIFEATSFGGLNIDPNAFEGKK-ESR 79 (132)
T ss_pred CCcceEEEEeCCCCHHHHHhcccccCChhhhhhhheeCCCCEEEEEecCCceeeeEEEeccCCcCCcChhHhcCCC-CCc
Confidence 4699999999999999999999999999999999999999999999999999999999999999999999999322 689
Q ss_pred CCceEEEEEeeeecCCCCCcchhHHHhcccCCCCCCCCCCHHHHHHHHHhhcc
Q 007704 96 YPAQVQIRVRMQCQPLNEEKFKPIIAANYYTPHHFWFELDHSQASKLIALLSS 148 (592)
Q Consensus 96 ~paqv~~~~~~~~~pl~e~~~~~~i~~n~~~~~~f~~~l~~~q~~~l~~lf~~ 148 (592)
|||||||+|+|+|+||+|++||+||++|||.++||+||||++||++|++||+|
T Consensus 80 fPaQVrf~i~~~C~PL~E~~f~~aI~~nY~~~~kF~~eLs~~Qv~~L~~LF~~ 132 (132)
T smart00767 80 FPAQVRFRIRKDCKPLPESEFRSAILENYDGPSKFRFELSHAQVLRLLDLFAP 132 (132)
T ss_pred cCcEEEEEEeeeecCCCHHHHHHHHHHhCcCCccccccCCHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999986
No 3
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=1.4e-42 Score=386.67 Aligned_cols=258 Identities=36% Similarity=0.661 Sum_probs=242.3
Q ss_pred ccccCCCcccc---CCCccCcceEEEEECCEEEEEeeCC-CCCCcceEEEEECCCCeEEECCCCCCCCcceEEEEECCEE
Q 007704 332 LHLDPSESIYL---PMSSARSYASAAMLNGELYIFGGGD-GNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATIDNKI 407 (592)
Q Consensus 332 ~~~~p~~~~~~---p~p~~R~~~s~v~~~~~Iyv~GG~~-~~~~~~~v~~yd~~t~~W~~l~~lp~~r~~~~~~~~~~~I 407 (592)
..++|....|. +||.+|..+++++++|+||++||.+ +...++++++||+.+++|..+++|+.+|..+++++++|.|
T Consensus 304 e~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~i 383 (571)
T KOG4441|consen 304 ECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKL 383 (571)
T ss_pred EEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEE
Confidence 34666666554 7899999999999999999999999 7888999999999999999999999999999999999999
Q ss_pred EEEecCCCCcccceEEEEeCCCCeEEEcccccCcccceEEEEECCEEEEEeccCCCC-CCCeeEEEeCCCCeEEEeccCC
Q 007704 408 FAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNGVLYATGGYDGNE-YMNSAERFDPREHYWTKIANMN 486 (592)
Q Consensus 408 yv~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~~~a~~~~g~IYV~GG~~~~~-~~~~v~~yD~~t~~W~~i~~~p 486 (592)
|++||.++...++++++|||.+++|+.+++|+.+|++|++++++++||++||.++.. .++++++|||.+++|+.+++|+
T Consensus 384 YavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~ 463 (571)
T KOG4441|consen 384 YAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMN 463 (571)
T ss_pred EEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcc
Confidence 999999999999999999999999999999999999999999999999999999887 9999999999999999999999
Q ss_pred CCCceeEEEEECCEEEEEecCCCCCCCCeEEEEeCCCCeEEEcCCCCCCCcceEEEEECCEEEEEecccCCCccccEEEE
Q 007704 487 RRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVVKEAIYVIGGVKNGSEIVDTVER 566 (592)
Q Consensus 487 ~~R~~~s~v~~~~~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~lp~~R~~~s~~v~~~~Iyv~GG~~~~~~~~~~v~~ 566 (592)
.+|.++++++++++||++||+++.....++++|||.+++|+.+++|+.+|..+.++++++++|++||.++ ...+++|++
T Consensus 464 ~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~-~~~l~~ve~ 542 (571)
T KOG4441|consen 464 TRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGGFDG-NNNLNTVEC 542 (571)
T ss_pred cccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEecccC-ccccceeEE
Confidence 9999999999999999999999877788899999999999999999999999999999999999999654 479999999
Q ss_pred EcCC-CcEEEccccCCCCccceEEEE
Q 007704 567 FKEG-QGWEEINSRAIGKRCFMSVVT 591 (592)
Q Consensus 567 Yd~~-~~W~~v~~~p~~~r~~~savv 591 (592)
|||. ++|+..+. |...|+.+++++
T Consensus 543 ydp~~d~W~~~~~-~~~~~~~~~~~~ 567 (571)
T KOG4441|consen 543 YDPETDTWTEVTE-PESGRGGAGVAV 567 (571)
T ss_pred cCCCCCceeeCCC-ccccccCcceEE
Confidence 9999 99999999 666687777765
No 4
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=9.5e-40 Score=364.92 Aligned_cols=244 Identities=18% Similarity=0.244 Sum_probs=219.6
Q ss_pred ccccCCCcccc---CCCccCcceEEEEECCEEEEEeeCC-CCCCcceEEEEECCCCeEEECCCCCCCCcceEEEEECCEE
Q 007704 332 LHLDPSESIYL---PMSSARSYASAAMLNGELYIFGGGD-GNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATIDNKI 407 (592)
Q Consensus 332 ~~~~p~~~~~~---p~p~~R~~~s~v~~~~~Iyv~GG~~-~~~~~~~v~~yd~~t~~W~~l~~lp~~r~~~~~~~~~~~I 407 (592)
+.++|....|. ++|.+|.++++++++++|||+||.+ +....+++++||+.+++|..+++||.+|..+++++++|+|
T Consensus 275 ~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~I 354 (557)
T PHA02713 275 LVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTI 354 (557)
T ss_pred EEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEE
Confidence 45677766654 7888999999999999999999976 4456789999999999999999999999999999999999
Q ss_pred EEEecCCCCcccceEEEEeCCCCeEEEcccccCcccceEEEEECCEEEEEeccCCCC------------------CCCee
Q 007704 408 FAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNGVLYATGGYDGNE------------------YMNSA 469 (592)
Q Consensus 408 yv~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~~~a~~~~g~IYV~GG~~~~~------------------~~~~v 469 (592)
|++||.++....+++++|||.+++|+.+++||.+|.++++++++|+|||+||.++.. .++++
T Consensus 355 YviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~v 434 (557)
T PHA02713 355 YAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKV 434 (557)
T ss_pred EEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceE
Confidence 999998776678899999999999999999999999999999999999999986431 36789
Q ss_pred EEEeCCCCeEEEeccCCCCCceeEEEEECCEEEEEecCCCCCC-CCeEEEEeCCC-CeEEEcCCCCCCCcceEEEEECCE
Q 007704 470 ERFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAM-VPSIEVYDPRL-GSWMSGEPMKLSRGYLGAAVVKEA 547 (592)
Q Consensus 470 ~~yD~~t~~W~~i~~~p~~R~~~s~v~~~~~Lyv~GG~~~~~~-~~~v~~yD~~t-~~W~~v~~lp~~R~~~s~~v~~~~ 547 (592)
++|||.+++|+.+++|+.+|..+++++++++||++||.++... .+.+++|||.+ ++|+.+++||.+|..+++++++++
T Consensus 435 e~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~~~~ 514 (557)
T PHA02713 435 IRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILHDNT 514 (557)
T ss_pred EEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEECCE
Confidence 9999999999999999999999999999999999999875433 35689999999 899999999999999999999999
Q ss_pred EEEEecccCCCccccEEEEEcCC-CcEEEcccc
Q 007704 548 IYVIGGVKNGSEIVDTVERFKEG-QGWEEINSR 579 (592)
Q Consensus 548 Iyv~GG~~~~~~~~~~v~~Yd~~-~~W~~v~~~ 579 (592)
||++||.++. .++++||+. ++|+.+++-
T Consensus 515 iyv~Gg~~~~----~~~e~yd~~~~~W~~~~~~ 543 (557)
T PHA02713 515 IMMLHCYESY----MLQDTFNVYTYEWNHICHQ 543 (557)
T ss_pred EEEEeeecce----eehhhcCcccccccchhhh
Confidence 9999998763 579999999 999988763
No 5
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=3.1e-39 Score=359.92 Aligned_cols=235 Identities=34% Similarity=0.636 Sum_probs=221.8
Q ss_pred EECCEEEEEeeCCC-CCCcceEEEEECCCCeEEECCCCCCCCcceEEEEECCEEEEEecCC-CCcccceEEEEeCCCCeE
Q 007704 355 MLNGELYIFGGGDG-NSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATIDNKIFAIGGGN-GLECFSDVEMLDLDIGKW 432 (592)
Q Consensus 355 ~~~~~Iyv~GG~~~-~~~~~~v~~yd~~t~~W~~l~~lp~~r~~~~~~~~~~~Iyv~GG~~-~~~~~~~v~~yD~~t~~W 432 (592)
...+.||++||..+ ....+.+..||+.++.|..+++||.+|..+++++++|+||++||.+ +...++++|+||+.+++|
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W 361 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQW 361 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCce
Confidence 56789999999986 7888999999999999999999999999999999999999999999 788899999999999999
Q ss_pred EEcccccCcccceEEEEECCEEEEEeccCCCCCCCeeEEEeCCCCeEEEeccCCCCCceeEEEEECCEEEEEecCCCCC-
Q 007704 433 IRTRSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGSA- 511 (592)
Q Consensus 433 ~~i~~~p~~R~~~~a~~~~g~IYV~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~~s~v~~~~~Lyv~GG~~~~~- 511 (592)
+.+++|+.+|..+++++++|.||++||+++..+++++++|||.++.|+.+++|+.+|++|++++++++||++||.++..
T Consensus 362 ~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~ 441 (571)
T KOG4441|consen 362 TPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSN 441 (571)
T ss_pred eccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred CCCeEEEEeCCCCeEEEcCCCCCCCcceEEEEECCEEEEEecccCCCccccEEEEEcCC-CcEEEccccCCCCccceEEE
Q 007704 512 MVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVVKEAIYVIGGVKNGSEIVDTVERFKEG-QGWEEINSRAIGKRCFMSVV 590 (592)
Q Consensus 512 ~~~~v~~yD~~t~~W~~v~~lp~~R~~~s~~v~~~~Iyv~GG~~~~~~~~~~v~~Yd~~-~~W~~v~~~p~~~r~~~sav 590 (592)
.++++++|||.+++|+.+++|+.+|.+++++++++.||++||.++ .....+|++|||. ++|+.+++|+.++.....++
T Consensus 442 ~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~-~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~ 520 (571)
T KOG4441|consen 442 CLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDG-TSALSSVERYDPETNQWTMVAPMTSPRSAVGVVV 520 (571)
T ss_pred ccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccC-CCccceEEEEcCCCCceeEcccCccccccccEEE
Confidence 899999999999999999999999999999999999999999988 4677889999999 99999999998844444443
No 6
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=1.6e-37 Score=328.02 Aligned_cols=235 Identities=20% Similarity=0.371 Sum_probs=202.1
Q ss_pred CCccCcceEEEEECCEEEEEeeCCC--CCCcceEEEEECCCCeEEECCCCC-CCC---cceEEEEECCEEEEEecCCCCc
Q 007704 344 MSSARSYASAAMLNGELYIFGGGDG--NSWHNTVESYSPANDEWTSRPSLN-GTK---GSLAGATIDNKIFAIGGGNGLE 417 (592)
Q Consensus 344 ~p~~R~~~s~v~~~~~Iyv~GG~~~--~~~~~~v~~yd~~t~~W~~l~~lp-~~r---~~~~~~~~~~~Iyv~GG~~~~~ 417 (592)
+|.+|..|++++++++|||+||... ....+++++||+.+++|..+++++ .|| ..|++++++++||||||.+...
T Consensus 19 ~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~ 98 (341)
T PLN02153 19 GPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKR 98 (341)
T ss_pred CCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCC
Confidence 6789999999999999999999753 334689999999999999987764 344 3688999999999999987777
Q ss_pred ccceEEEEeCCCCeEEEcccc-----cCcccceEEEEECCEEEEEeccCCC------CCCCeeEEEeCCCCeEEEeccCC
Q 007704 418 CFSDVEMLDLDIGKWIRTRSM-----LQKRFALAAAELNGVLYATGGYDGN------EYMNSAERFDPREHYWTKIANMN 486 (592)
Q Consensus 418 ~~~~v~~yD~~t~~W~~i~~~-----p~~R~~~~a~~~~g~IYV~GG~~~~------~~~~~v~~yD~~t~~W~~i~~~p 486 (592)
.++++++||+.+++|+.++++ |.+|..|++++++++|||+||.+.. ..++++++||+.+++|+.++++.
T Consensus 99 ~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~ 178 (341)
T PLN02153 99 EFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPG 178 (341)
T ss_pred ccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCC
Confidence 788999999999999999877 8899999999999999999998643 24578999999999999998664
Q ss_pred ---CCCceeEEEEECCEEEEEecCCCC--------CCCCeEEEEeCCCCeEEEcCC---CCCCCcceEEEEECCEEEEEe
Q 007704 487 ---RRRGCHSLAVLNGKLYALGGFDGS--------AMVPSIEVYDPRLGSWMSGEP---MKLSRGYLGAAVVKEAIYVIG 552 (592)
Q Consensus 487 ---~~R~~~s~v~~~~~Lyv~GG~~~~--------~~~~~v~~yD~~t~~W~~v~~---lp~~R~~~s~~v~~~~Iyv~G 552 (592)
.+|.+|++++++++|||+||.+.. ...+++++||+.+++|+.+.. +|.+|..|++++++++|||||
T Consensus 179 ~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~G 258 (341)
T PLN02153 179 ENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFG 258 (341)
T ss_pred CCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEEC
Confidence 789999999999999999997421 235789999999999999864 688999999999999999999
Q ss_pred cccC--------CCccccEEEEEcCC-CcEEEccc
Q 007704 553 GVKN--------GSEIVDTVERFKEG-QGWEEINS 578 (592)
Q Consensus 553 G~~~--------~~~~~~~v~~Yd~~-~~W~~v~~ 578 (592)
|... .+...+++|+||+. ++|+.+..
T Consensus 259 G~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~ 293 (341)
T PLN02153 259 GEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGE 293 (341)
T ss_pred cccCCccccccccccccccEEEEEcCccEEEeccC
Confidence 9742 23457899999999 99999863
No 7
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=4.1e-36 Score=329.92 Aligned_cols=235 Identities=18% Similarity=0.351 Sum_probs=206.2
Q ss_pred CCccCcceEEEEECCEEEEEeeCCC--CCCcceEEEEECCCCeEEECCCC---CC-CCcceEEEEECCEEEEEecCCCCc
Q 007704 344 MSSARSYASAAMLNGELYIFGGGDG--NSWHNTVESYSPANDEWTSRPSL---NG-TKGSLAGATIDNKIFAIGGGNGLE 417 (592)
Q Consensus 344 ~p~~R~~~s~v~~~~~Iyv~GG~~~--~~~~~~v~~yd~~t~~W~~l~~l---p~-~r~~~~~~~~~~~Iyv~GG~~~~~ 417 (592)
+|.+|.+|++++++++||||||... ....+++|+||+.+++|..++.+ |. +|..|++++++++|||+||.....
T Consensus 162 ~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~ 241 (470)
T PLN02193 162 GPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASR 241 (470)
T ss_pred CCCCccccEEEEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCC
Confidence 5789999999999999999999753 23457899999999999988653 33 356888999999999999988777
Q ss_pred ccceEEEEeCCCCeEEEcccc---cCcccceEEEEECCEEEEEeccCCCCCCCeeEEEeCCCCeEEEecc---CCCCCce
Q 007704 418 CFSDVEMLDLDIGKWIRTRSM---LQKRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHYWTKIAN---MNRRRGC 491 (592)
Q Consensus 418 ~~~~v~~yD~~t~~W~~i~~~---p~~R~~~~a~~~~g~IYV~GG~~~~~~~~~v~~yD~~t~~W~~i~~---~p~~R~~ 491 (592)
.++++|+||+.+++|++++++ |.+|..|++++++++|||+||.+....++++++||+.+++|+.+++ ++.+|.+
T Consensus 242 ~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~ 321 (470)
T PLN02193 242 QYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGG 321 (470)
T ss_pred CCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCC
Confidence 789999999999999999887 8899999999999999999999887788999999999999999864 6788999
Q ss_pred eEEEEECCEEEEEecCCCCCCCCeEEEEeCCCCeEEEcCC---CCCCCcceEEEEECCEEEEEecccC--------CCcc
Q 007704 492 HSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEP---MKLSRGYLGAAVVKEAIYVIGGVKN--------GSEI 560 (592)
Q Consensus 492 ~s~v~~~~~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~---lp~~R~~~s~~v~~~~Iyv~GG~~~--------~~~~ 560 (592)
|++++++++||++||.++. .++++++||+.+++|+.+.. +|.+|..|++++++++||||||... .+..
T Consensus 322 ~~~~~~~gkiyviGG~~g~-~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~ 400 (470)
T PLN02193 322 AGLEVVQGKVWVVYGFNGC-EVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQL 400 (470)
T ss_pred cEEEEECCcEEEEECCCCC-ccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccce
Confidence 9999999999999998754 46899999999999999865 4889999999999999999999753 1246
Q ss_pred ccEEEEEcCC-CcEEEcccc
Q 007704 561 VDTVERFKEG-QGWEEINSR 579 (592)
Q Consensus 561 ~~~v~~Yd~~-~~W~~v~~~ 579 (592)
.+++|+||+. ++|+.++.+
T Consensus 401 ~ndv~~~D~~t~~W~~~~~~ 420 (470)
T PLN02193 401 TDGTFALDTETLQWERLDKF 420 (470)
T ss_pred eccEEEEEcCcCEEEEcccC
Confidence 7899999999 999998653
No 8
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=7.1e-36 Score=333.86 Aligned_cols=233 Identities=22% Similarity=0.404 Sum_probs=210.5
Q ss_pred CcceEEEEECCEEEEEeeCCC-CCCcceEEEEECCCCeEEECCCCCCCCcceEEEEECCEEEEEecCCCCcccceEEEEe
Q 007704 348 RSYASAAMLNGELYIFGGGDG-NSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLD 426 (592)
Q Consensus 348 R~~~s~v~~~~~Iyv~GG~~~-~~~~~~v~~yd~~t~~W~~l~~lp~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~v~~yD 426 (592)
+..+++++++++|||+||.++ ....+++++||+.+++|..+++|+.+|..|++++++++||++||.+.....+++++||
T Consensus 285 ~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd 364 (534)
T PHA03098 285 VYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWK 364 (534)
T ss_pred cccceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEc
Confidence 455688899999999999875 3456799999999999999999999999999999999999999988666788999999
Q ss_pred CCCCeEEEcccccCcccceEEEEECCEEEEEeccCCC-CCCCeeEEEeCCCCeEEEeccCCCCCceeEEEEECCEEEEEe
Q 007704 427 LDIGKWIRTRSMLQKRFALAAAELNGVLYATGGYDGN-EYMNSAERFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALG 505 (592)
Q Consensus 427 ~~t~~W~~i~~~p~~R~~~~a~~~~g~IYV~GG~~~~-~~~~~v~~yD~~t~~W~~i~~~p~~R~~~s~v~~~~~Lyv~G 505 (592)
+.+++|+.++++|.+|.+|+++.++++|||+||.... ..++++++||+.+++|+.++++|.+|.+|++++++++||++|
T Consensus 365 ~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~G 444 (534)
T PHA03098 365 PGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIG 444 (534)
T ss_pred CCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEEC
Confidence 9999999999999999999999999999999997533 457899999999999999999999999999999999999999
Q ss_pred cCCCCC---CCCeEEEEeCCCCeEEEcCCCCCCCcceEEEEECCEEEEEecccCCCccccEEEEEcCC-CcEEEccccCC
Q 007704 506 GFDGSA---MVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVVKEAIYVIGGVKNGSEIVDTVERFKEG-QGWEEINSRAI 581 (592)
Q Consensus 506 G~~~~~---~~~~v~~yD~~t~~W~~v~~lp~~R~~~s~~v~~~~Iyv~GG~~~~~~~~~~v~~Yd~~-~~W~~v~~~p~ 581 (592)
|.+... ..+.+++||+.+++|+.++++|.+|..+++++++++|||+||.++. ...++|++||+. ++|..++.+|.
T Consensus 445 G~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~~p~ 523 (534)
T PHA03098 445 GISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIFNNKIYVVGGDKYE-YYINEIEVYDDKTNTWTLFCKFPK 523 (534)
T ss_pred CccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEECCEEEEEcCCcCC-cccceeEEEeCCCCEEEecCCCcc
Confidence 976432 2567999999999999999999999999999999999999998754 456899999999 99999988664
No 9
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=8.6e-36 Score=333.08 Aligned_cols=230 Identities=19% Similarity=0.312 Sum_probs=201.8
Q ss_pred EEEEeeCCCCCCcceEEEEECCCCeEEECCCCCCCCcceEEEEECCEEEEEecCC-CCcccceEEEEeCCCCeEEEcccc
Q 007704 360 LYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATIDNKIFAIGGGN-GLECFSDVEMLDLDIGKWIRTRSM 438 (592)
Q Consensus 360 Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~lp~~r~~~~~~~~~~~Iyv~GG~~-~~~~~~~v~~yD~~t~~W~~i~~~ 438 (592)
|++.||.. ......+++||+.+++|..+++||.+|..+++++++++|||+||.+ .....+++++||+.+++|..+++|
T Consensus 260 l~~~~g~~-~~~~~~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m 338 (557)
T PHA02713 260 LVCHDTKY-NVCNPCILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPM 338 (557)
T ss_pred EEEecCcc-ccCCCCEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCC
Confidence 45555522 2233578999999999999999999999999999999999999975 344678999999999999999999
Q ss_pred cCcccceEEEEECCEEEEEeccCCCCCCCeeEEEeCCCCeEEEeccCCCCCceeEEEEECCEEEEEecCCCCC-------
Q 007704 439 LQKRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGSA------- 511 (592)
Q Consensus 439 p~~R~~~~a~~~~g~IYV~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~~s~v~~~~~Lyv~GG~~~~~------- 511 (592)
+.+|..+++++++|+||++||.++...++++++|||.+++|+.+++||.+|..+++++++++||++||.++..
T Consensus 339 ~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~ 418 (557)
T PHA02713 339 IKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHH 418 (557)
T ss_pred cchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccc
Confidence 9999999999999999999999877778899999999999999999999999999999999999999986421
Q ss_pred -----------CCCeEEEEeCCCCeEEEcCCCCCCCcceEEEEECCEEEEEecccCCCccccEEEEEcCC--CcEEEccc
Q 007704 512 -----------MVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVVKEAIYVIGGVKNGSEIVDTVERFKEG--QGWEEINS 578 (592)
Q Consensus 512 -----------~~~~v~~yD~~t~~W~~v~~lp~~R~~~s~~v~~~~Iyv~GG~~~~~~~~~~v~~Yd~~--~~W~~v~~ 578 (592)
..+++++|||.+++|+.+++|+.+|..+++++++++|||+||.++.....+.|++|||+ ++|+.+++
T Consensus 419 ~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~ 498 (557)
T PHA02713 419 MNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITT 498 (557)
T ss_pred cccccccccccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccc
Confidence 25789999999999999999999999999999999999999987544445678999999 38999999
Q ss_pred cCCCCccceEEEE
Q 007704 579 RAIGKRCFMSVVT 591 (592)
Q Consensus 579 ~p~~~r~~~savv 591 (592)
||.. |..+++++
T Consensus 499 m~~~-r~~~~~~~ 510 (557)
T PHA02713 499 TESR-LSALHTIL 510 (557)
T ss_pred cCcc-cccceeEE
Confidence 9997 55666555
No 10
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=2.8e-35 Score=308.71 Aligned_cols=246 Identities=18% Similarity=0.226 Sum_probs=205.9
Q ss_pred ccCcceEEEEECCEEEEEeeCCCC----------CCcceEEEEE-CCC-CeEEECCCCCCCCcceEEEEECCEEEEEecC
Q 007704 346 SARSYASAAMLNGELYIFGGGDGN----------SWHNTVESYS-PAN-DEWTSRPSLNGTKGSLAGATIDNKIFAIGGG 413 (592)
Q Consensus 346 ~~R~~~s~v~~~~~Iyv~GG~~~~----------~~~~~v~~yd-~~t-~~W~~l~~lp~~r~~~~~~~~~~~Iyv~GG~ 413 (592)
..++++.++++++.|||+||.+.. ..+++++.|+ +.. .+|..+++||.+|..+++++++++||++||.
T Consensus 2 ~~~~g~~~~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~~r~~~~~~~~~~~lyviGG~ 81 (323)
T TIGR03548 2 LGVAGCYAGIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQLPYEAAYGASVSVENGIYYIGGS 81 (323)
T ss_pred CceeeEeeeEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccCCccccceEEEEECCEEEEEcCC
Confidence 356788899999999999997632 3567899886 332 3799999999999999999999999999998
Q ss_pred CCCcccceEEEEeCCCCeE----EEcccccCcccceEEEEECCEEEEEeccCCCCCCCeeEEEeCCCCeEEEeccCC-CC
Q 007704 414 NGLECFSDVEMLDLDIGKW----IRTRSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMN-RR 488 (592)
Q Consensus 414 ~~~~~~~~v~~yD~~t~~W----~~i~~~p~~R~~~~a~~~~g~IYV~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p-~~ 488 (592)
+....++++++||+.+++| +.+++||.+|..|++++++++|||+||......++++++||+.+++|+.++++| .+
T Consensus 82 ~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~ 161 (323)
T TIGR03548 82 NSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEP 161 (323)
T ss_pred CCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCC
Confidence 8777789999999999988 778999999999999999999999999866666899999999999999999887 58
Q ss_pred CceeEEEEECCEEEEEecCCCCCCCCeEEEEeCCCCeEEEcCCCC---CCC--cceE-EEEECCEEEEEecccCCC----
Q 007704 489 RGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMK---LSR--GYLG-AAVVKEAIYVIGGVKNGS---- 558 (592)
Q Consensus 489 R~~~s~v~~~~~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~lp---~~R--~~~s-~~v~~~~Iyv~GG~~~~~---- 558 (592)
|..|++++++++|||+||.++.. ..++++||+.+++|+.+++|+ .|+ ..++ +++.+++|||+||.+...
T Consensus 162 r~~~~~~~~~~~iYv~GG~~~~~-~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~ 240 (323)
T TIGR03548 162 RVQPVCVKLQNELYVFGGGSNIA-YTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDA 240 (323)
T ss_pred CCcceEEEECCEEEEEcCCCCcc-ccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHH
Confidence 99999999999999999986543 467899999999999998763 333 3333 344579999999986421
Q ss_pred ---------------------------ccccEEEEEcCC-CcEEEccccCCCCccceEEEEC
Q 007704 559 ---------------------------EIVDTVERFKEG-QGWEEINSRAIGKRCFMSVVTV 592 (592)
Q Consensus 559 ---------------------------~~~~~v~~Yd~~-~~W~~v~~~p~~~r~~~savvl 592 (592)
.+.++|++||+. ++|+.++.+|...|+.++++++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~ 302 (323)
T TIGR03548 241 VIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPFFARCGAALLLT 302 (323)
T ss_pred HhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcccccccccCchheEEE
Confidence 124789999999 9999999888667888877653
No 11
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=4e-35 Score=310.32 Aligned_cols=244 Identities=17% Similarity=0.272 Sum_probs=200.7
Q ss_pred CCCccCcceEEEEECCEEEEEeeCCCCCCcceEEEEEC--CCCeEEECCCCC-CCCcceEEEEECCEEEEEecCCCC---
Q 007704 343 PMSSARSYASAAMLNGELYIFGGGDGNSWHNTVESYSP--ANDEWTSRPSLN-GTKGSLAGATIDNKIFAIGGGNGL--- 416 (592)
Q Consensus 343 p~p~~R~~~s~v~~~~~Iyv~GG~~~~~~~~~v~~yd~--~t~~W~~l~~lp-~~r~~~~~~~~~~~Iyv~GG~~~~--- 416 (592)
++|.+|..+++|+++++|||+||... +++++||+ .+++|..+++|| .+|..+++++++++|||+||....
T Consensus 3 ~lp~~~~~~~~~~~~~~vyv~GG~~~----~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~ 78 (346)
T TIGR03547 3 DLPVGFKNGTGAIIGDKVYVGLGSAG----TSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSE 78 (346)
T ss_pred CCCccccCceEEEECCEEEEEccccC----CeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCCC
Confidence 57889999999899999999999743 67899996 678999999999 589999999999999999997532
Q ss_pred ---cccceEEEEeCCCCeEEEcc-cccCcccceEEE-EECCEEEEEeccCCCC---------------------------
Q 007704 417 ---ECFSDVEMLDLDIGKWIRTR-SMLQKRFALAAA-ELNGVLYATGGYDGNE--------------------------- 464 (592)
Q Consensus 417 ---~~~~~v~~yD~~t~~W~~i~-~~p~~R~~~~a~-~~~g~IYV~GG~~~~~--------------------------- 464 (592)
..++++|+||+.+++|+.++ ++|.+|.+++++ +++++||++||++...
T Consensus 79 ~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (346)
T TIGR03547 79 GSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFS 158 (346)
T ss_pred CcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhC
Confidence 24689999999999999987 567788888777 7899999999986421
Q ss_pred -------CCCeeEEEeCCCCeEEEeccCCC-CCceeEEEEECCEEEEEecCCCCC-CCCeEEEEe--CCCCeEEEcCCCC
Q 007704 465 -------YMNSAERFDPREHYWTKIANMNR-RRGCHSLAVLNGKLYALGGFDGSA-MVPSIEVYD--PRLGSWMSGEPMK 533 (592)
Q Consensus 465 -------~~~~v~~yD~~t~~W~~i~~~p~-~R~~~s~v~~~~~Lyv~GG~~~~~-~~~~v~~yD--~~t~~W~~v~~lp 533 (592)
.++++++|||.+++|+.+++||. +|.++++++++++|||+||..... ...+++.|| +.+++|+.+++||
T Consensus 159 ~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~ 238 (346)
T TIGR03547 159 QPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLP 238 (346)
T ss_pred CChhHcCccceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCC
Confidence 24789999999999999999985 688999999999999999976432 234566565 5778999999998
Q ss_pred CCC-------cceEEEEECCEEEEEecccCCC----------------ccccEEEEEcCC-CcEEEccccCCCCccceEE
Q 007704 534 LSR-------GYLGAAVVKEAIYVIGGVKNGS----------------EIVDTVERFKEG-QGWEEINSRAIGKRCFMSV 589 (592)
Q Consensus 534 ~~R-------~~~s~~v~~~~Iyv~GG~~~~~----------------~~~~~v~~Yd~~-~~W~~v~~~p~~~r~~~sa 589 (592)
.+| ..|++++++++|||+||.+..+ .....+++||++ ++|+.++++|.+ |..+++
T Consensus 239 ~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~-~~~~~~ 317 (346)
T TIGR03547 239 PPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQG-LAYGVS 317 (346)
T ss_pred CCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCCC-ceeeEE
Confidence 875 2455778999999999975321 012479999999 999999999987 566666
Q ss_pred EE
Q 007704 590 VT 591 (592)
Q Consensus 590 vv 591 (592)
++
T Consensus 318 ~~ 319 (346)
T TIGR03547 318 VS 319 (346)
T ss_pred EE
Confidence 55
No 12
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=9.7e-35 Score=319.89 Aligned_cols=210 Identities=22% Similarity=0.381 Sum_probs=192.6
Q ss_pred EEEECCEEEEEeeCCCCCCcceEEEEECCCCeEEECCCCCCCCcceEEEEECCEEEEEecCCCCcccceEEEEeCCCCeE
Q 007704 353 AAMLNGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIGKW 432 (592)
Q Consensus 353 ~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~lp~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~v~~yD~~t~~W 432 (592)
++.+++.||++||.++....+++++||+.+++|..+++|+.+|..+++++++++||++||.++ .++++.||+.+++|
T Consensus 267 ~~~~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~---~~sve~ydp~~n~W 343 (480)
T PHA02790 267 STHVGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPN---PTSVERWFHGDAAW 343 (480)
T ss_pred eEEECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCC---CCceEEEECCCCeE
Confidence 445899999999988767788999999999999999999999999999999999999999753 26799999999999
Q ss_pred EEcccccCcccceEEEEECCEEEEEeccCCCCCCCeeEEEeCCCCeEEEeccCCCCCceeEEEEECCEEEEEecCCCCCC
Q 007704 433 IRTRSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAM 512 (592)
Q Consensus 433 ~~i~~~p~~R~~~~a~~~~g~IYV~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~~s~v~~~~~Lyv~GG~~~~~~ 512 (592)
+.+++||.+|.++++++++|+|||+||.++. .+.+++|||.+++|+.+++|+.+|..|++++++++||++||.
T Consensus 344 ~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~--~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG~----- 416 (480)
T PHA02790 344 VNMPSLLKPRCNPAVASINNVIYVIGGHSET--DTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGRN----- 416 (480)
T ss_pred EECCCCCCCCcccEEEEECCEEEEecCcCCC--CccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECCc-----
Confidence 9999999999999999999999999998643 367999999999999999999999999999999999999983
Q ss_pred CCeEEEEeCCCCeEEEcCCCCCCCcceEEEEECCEEEEEecccCCCccccEEEEEcCC-CcEEEc
Q 007704 513 VPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVVKEAIYVIGGVKNGSEIVDTVERFKEG-QGWEEI 576 (592)
Q Consensus 513 ~~~v~~yD~~t~~W~~v~~lp~~R~~~s~~v~~~~Iyv~GG~~~~~~~~~~v~~Yd~~-~~W~~v 576 (592)
+++||+.+++|+.+++|+.+|..+++++++++|||+||.++. ...+.|++|||. ++|+..
T Consensus 417 ---~e~ydp~~~~W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~~-~~~~~ve~Yd~~~~~W~~~ 477 (480)
T PHA02790 417 ---AEFYCESSNTWTLIDDPIYPRDNPELIIVDNKLLLIGGFYRG-SYIDTIEVYNNRTYSWNIW 477 (480)
T ss_pred ---eEEecCCCCcEeEcCCCCCCccccEEEEECCEEEEECCcCCC-cccceEEEEECCCCeEEec
Confidence 678999999999999999999999999999999999998743 456889999999 999864
No 13
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=9.5e-34 Score=299.33 Aligned_cols=221 Identities=21% Similarity=0.296 Sum_probs=186.2
Q ss_pred cceEEEEECCEEEEEeeCCCCCCcceEEEEECCCCeEEECCCC-----CCCCcceEEEEECCEEEEEecCCCC------c
Q 007704 349 SYASAAMLNGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSL-----NGTKGSLAGATIDNKIFAIGGGNGL------E 417 (592)
Q Consensus 349 ~~~s~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~l-----p~~r~~~~~~~~~~~Iyv~GG~~~~------~ 417 (592)
.+|++++++++||||||.++...++++++||+.+++|+.+++| |.+|..|++++++++|||+||.+.. .
T Consensus 77 ~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 156 (341)
T PLN02153 77 LGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPE 156 (341)
T ss_pred CceEEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCc
Confidence 3788999999999999988777789999999999999999877 7889999999999999999997532 2
Q ss_pred ccceEEEEeCCCCeEEEccccc---CcccceEEEEECCEEEEEeccCCC--------CCCCeeEEEeCCCCeEEEecc--
Q 007704 418 CFSDVEMLDLDIGKWIRTRSML---QKRFALAAAELNGVLYATGGYDGN--------EYMNSAERFDPREHYWTKIAN-- 484 (592)
Q Consensus 418 ~~~~v~~yD~~t~~W~~i~~~p---~~R~~~~a~~~~g~IYV~GG~~~~--------~~~~~v~~yD~~t~~W~~i~~-- 484 (592)
.++++++||+.+++|+.++++. .+|.+|++++++++|||+||.... ..++++++||+.+++|+.++.
T Consensus 157 ~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g 236 (341)
T PLN02153 157 RFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTG 236 (341)
T ss_pred ccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccC
Confidence 4578999999999999998664 789999999999999999997521 225789999999999999864
Q ss_pred -CCCCCceeEEEEECCEEEEEecCCC---------CCCCCeEEEEeCCCCeEEEcC-----CCCCCCcceEEEE-EC-CE
Q 007704 485 -MNRRRGCHSLAVLNGKLYALGGFDG---------SAMVPSIEVYDPRLGSWMSGE-----PMKLSRGYLGAAV-VK-EA 547 (592)
Q Consensus 485 -~p~~R~~~s~v~~~~~Lyv~GG~~~---------~~~~~~v~~yD~~t~~W~~v~-----~lp~~R~~~s~~v-~~-~~ 547 (592)
+|.+|..|++++++++||||||... ....+++++||+.+++|+.+. ++|.+|..++++. .+ ++
T Consensus 237 ~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~ 316 (341)
T PLN02153 237 AKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYGKNG 316 (341)
T ss_pred CCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccccccccccCCcce
Confidence 6889999999999999999999731 234679999999999999986 4455554444443 43 58
Q ss_pred EEEEecccCCCccccEEEEEcC
Q 007704 548 IYVIGGVKNGSEIVDTVERFKE 569 (592)
Q Consensus 548 Iyv~GG~~~~~~~~~~v~~Yd~ 569 (592)
|||+||.++....++++++|+.
T Consensus 317 ~~~~gG~~~~~~~~~~~~~~~~ 338 (341)
T PLN02153 317 LLMHGGKLPTNERTDDLYFYAV 338 (341)
T ss_pred EEEEcCcCCCCccccceEEEec
Confidence 9999999887678899999985
No 14
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=4.6e-33 Score=305.85 Aligned_cols=222 Identities=16% Similarity=0.319 Sum_probs=193.8
Q ss_pred CcceEEEEECCEEEEEeeCCCCCCcceEEEEECCCCeEEECCCC---CCCCcceEEEEECCEEEEEecCCCCcccceEEE
Q 007704 348 RSYASAAMLNGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSL---NGTKGSLAGATIDNKIFAIGGGNGLECFSDVEM 424 (592)
Q Consensus 348 R~~~s~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~l---p~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~v~~ 424 (592)
|.+|++++++++||||||.++...++++|+||+.+++|+.++++ |.+|+.|++++++++|||+||......+++++.
T Consensus 219 ~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~ 298 (470)
T PLN02193 219 CLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDS 298 (470)
T ss_pred ccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEE
Confidence 56899999999999999988777889999999999999999887 789999999999999999999887777899999
Q ss_pred EeCCCCeEEEccc---ccCcccceEEEEECCEEEEEeccCCCCCCCeeEEEeCCCCeEEEeccC---CCCCceeEEEEEC
Q 007704 425 LDLDIGKWIRTRS---MLQKRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHYWTKIANM---NRRRGCHSLAVLN 498 (592)
Q Consensus 425 yD~~t~~W~~i~~---~p~~R~~~~a~~~~g~IYV~GG~~~~~~~~~v~~yD~~t~~W~~i~~~---p~~R~~~s~v~~~ 498 (592)
||+.+++|+.++. ++.+|.+|++++++++||++||.++. .++++++||+.+++|+.++++ |.+|..|++++++
T Consensus 299 yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~-~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~ 377 (470)
T PLN02193 299 YNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGC-EVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVG 377 (470)
T ss_pred EECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCC-ccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEEC
Confidence 9999999999864 67889999999999999999998764 368999999999999999654 8899999999999
Q ss_pred CEEEEEecCCC---------CCCCCeEEEEeCCCCeEEEcCC------CCCCCcceEEE--EEC--CEEEEEecccCCCc
Q 007704 499 GKLYALGGFDG---------SAMVPSIEVYDPRLGSWMSGEP------MKLSRGYLGAA--VVK--EAIYVIGGVKNGSE 559 (592)
Q Consensus 499 ~~Lyv~GG~~~---------~~~~~~v~~yD~~t~~W~~v~~------lp~~R~~~s~~--v~~--~~Iyv~GG~~~~~~ 559 (592)
++|||+||... ....+++++||+.+++|+.+.. .|.+|..++++ .+. +.|++|||.++...
T Consensus 378 ~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~~~~~~P~~R~~~~~~~~~~~~~~~~~~fGG~~~~~~ 457 (470)
T PLN02193 378 KHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFGEEEETPSSRGWTASTTGTIDGKKGLVMHGGKAPTND 457 (470)
T ss_pred CEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcccCCCCCCCCCCCccccceeeEEcCCceEEEEcCCCCccc
Confidence 99999999753 1345789999999999999864 36678777542 333 45999999988778
Q ss_pred cccEEEEEcCC
Q 007704 560 IVDTVERFKEG 570 (592)
Q Consensus 560 ~~~~v~~Yd~~ 570 (592)
.++|+|+|++.
T Consensus 458 ~~~D~~~~~~~ 468 (470)
T PLN02193 458 RFDDLFFYGID 468 (470)
T ss_pred cccceEEEecC
Confidence 99999999864
No 15
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=2.3e-33 Score=294.15 Aligned_cols=220 Identities=16% Similarity=0.265 Sum_probs=187.6
Q ss_pred cCCCccCcceEEEEECCEEEEEeeCCCCCCcceEEEEECCCCeE----EECCCCCCCCcceEEEEECCEEEEEecCCCCc
Q 007704 342 LPMSSARSYASAAMLNGELYIFGGGDGNSWHNTVESYSPANDEW----TSRPSLNGTKGSLAGATIDNKIFAIGGGNGLE 417 (592)
Q Consensus 342 ~p~p~~R~~~s~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W----~~l~~lp~~r~~~~~~~~~~~Iyv~GG~~~~~ 417 (592)
.++|.+|.++++++++++||++||.++...++++++||+.+++| ..+++||.+|..|++++++++|||+||.....
T Consensus 57 ~~lp~~r~~~~~~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~ 136 (323)
T TIGR03548 57 GQLPYEAAYGASVSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGK 136 (323)
T ss_pred ccCCccccceEEEEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCc
Confidence 36888999899999999999999988877889999999999987 78899999999999999999999999976555
Q ss_pred ccceEEEEeCCCCeEEEccccc-CcccceEEEEECCEEEEEeccCCCCCCCeeEEEeCCCCeEEEeccCC-----CCCce
Q 007704 418 CFSDVEMLDLDIGKWIRTRSML-QKRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMN-----RRRGC 491 (592)
Q Consensus 418 ~~~~v~~yD~~t~~W~~i~~~p-~~R~~~~a~~~~g~IYV~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p-----~~R~~ 491 (592)
..+++++||+.+++|+.++++| .+|..+++++++++|||+||.+... ..++++||+.+++|+.+++++ ..+.+
T Consensus 137 ~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~-~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~ 215 (323)
T TIGR03548 137 PSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIA-YTDGYKYSPKKNQWQKVADPTTDSEPISLLG 215 (323)
T ss_pred cCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCcc-ccceEEEecCCCeeEECCCCCCCCCceeccc
Confidence 6789999999999999999988 4899999999999999999987543 457899999999999998763 23334
Q ss_pred eEEEE-ECCEEEEEecCCCCC--------------------------------CCCeEEEEeCCCCeEEEcCCCC-CCCc
Q 007704 492 HSLAV-LNGKLYALGGFDGSA--------------------------------MVPSIEVYDPRLGSWMSGEPMK-LSRG 537 (592)
Q Consensus 492 ~s~v~-~~~~Lyv~GG~~~~~--------------------------------~~~~v~~yD~~t~~W~~v~~lp-~~R~ 537 (592)
++.++ .+++||++||.+... ..+++++||+.+++|+.++++| .+|.
T Consensus 216 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~ 295 (323)
T TIGR03548 216 AASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPFFARC 295 (323)
T ss_pred eeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcccccccccC
Confidence 44444 479999999986421 2367999999999999999887 5899
Q ss_pred ceEEEEECCEEEEEecccCCCcccc
Q 007704 538 YLGAAVVKEAIYVIGGVKNGSEIVD 562 (592)
Q Consensus 538 ~~s~~v~~~~Iyv~GG~~~~~~~~~ 562 (592)
.+++++++++||++||....+....
T Consensus 296 ~~~~~~~~~~iyv~GG~~~pg~rt~ 320 (323)
T TIGR03548 296 GAALLLTGNNIFSINGELKPGVRTP 320 (323)
T ss_pred chheEEECCEEEEEeccccCCcCCc
Confidence 9999999999999999866544433
No 16
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=100.00 E-value=3.6e-34 Score=290.92 Aligned_cols=237 Identities=22% Similarity=0.361 Sum_probs=205.8
Q ss_pred cccCCCccCcceEEEEE--CCEEEEEee--CCC--CCCcceEEEEECCCCeEEEC--CCCCCCCcceEEEEEC-CEEEEE
Q 007704 340 IYLPMSSARSYASAAML--NGELYIFGG--GDG--NSWHNTVESYSPANDEWTSR--PSLNGTKGSLAGATID-NKIFAI 410 (592)
Q Consensus 340 ~~~p~p~~R~~~s~v~~--~~~Iyv~GG--~~~--~~~~~~v~~yd~~t~~W~~l--~~lp~~r~~~~~~~~~-~~Iyv~ 410 (592)
...|.|+||.++++++. .+.|++||| .++ ...+|++|+||..+++|+.+ |+.|.||++|.++++- |.+|+|
T Consensus 59 ~~~~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~f 138 (521)
T KOG1230|consen 59 TSVPPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLF 138 (521)
T ss_pred ccCCCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEe
Confidence 34578999999999987 568999999 343 56799999999999999987 5678899999999885 899999
Q ss_pred ecCC------CCcccceEEEEeCCCCeEEEcc--cccCcccceEEEEECCEEEEEeccCCC----CCCCeeEEEeCCCCe
Q 007704 411 GGGN------GLECFSDVEMLDLDIGKWIRTR--SMLQKRFALAAAELNGVLYATGGYDGN----EYMNSAERFDPREHY 478 (592)
Q Consensus 411 GG~~------~~~~~~~v~~yD~~t~~W~~i~--~~p~~R~~~~a~~~~g~IYV~GG~~~~----~~~~~v~~yD~~t~~ 478 (592)
||.- .+.+++|+|+||+.|++|+++. .-|.+|++|.|+++..+|++|||+... .|+||+|+||+.+.+
T Consensus 139 GGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtyk 218 (521)
T KOG1230|consen 139 GGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYK 218 (521)
T ss_pred ccccCCcchhhhhhhhheeeeeeccchheeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEecccee
Confidence 9942 3457899999999999999884 678999999999999999999998654 589999999999999
Q ss_pred EEEecc---CCCCCceeEEEEE-CCEEEEEecCCC---------CCCCCeEEEEeCCC-----CeEEEcC---CCCCCCc
Q 007704 479 WTKIAN---MNRRRGCHSLAVL-NGKLYALGGFDG---------SAMVPSIEVYDPRL-----GSWMSGE---PMKLSRG 537 (592)
Q Consensus 479 W~~i~~---~p~~R~~~s~v~~-~~~Lyv~GG~~~---------~~~~~~v~~yD~~t-----~~W~~v~---~lp~~R~ 537 (592)
|+++.+ .|.+|++|++.+. ++.|||+|||+. ....+|+|.+++++ ..|+.+. -.|.||.
T Consensus 219 W~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRs 298 (521)
T KOG1230|consen 219 WSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRS 298 (521)
T ss_pred eeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCC
Confidence 999843 4899999999999 999999999863 24678999999998 7899986 4688999
Q ss_pred ceEEEEE-CCEEEEEecccC--------CCccccEEEEEcCC-CcEEEc
Q 007704 538 YLGAAVV-KEAIYVIGGVKN--------GSEIVDTVERFKEG-QGWEEI 576 (592)
Q Consensus 538 ~~s~~v~-~~~Iyv~GG~~~--------~~~~~~~v~~Yd~~-~~W~~v 576 (592)
++++++. +++.|.|||+.+ .+.|+|+++.||.+ ++|+..
T Consensus 299 gfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~ 347 (521)
T KOG1230|consen 299 GFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEG 347 (521)
T ss_pred ceeEEEecCCceEEecceecccccchhhhhhhhhhhhheecccchhhHh
Confidence 9999988 569999999987 25699999999999 999875
No 17
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=1.1e-32 Score=294.94 Aligned_cols=246 Identities=17% Similarity=0.257 Sum_probs=198.4
Q ss_pred ccCCCccCcceEEEEECCEEEEEeeCCCCCCcceEEEEECC--CCeEEECCCCC-CCCcceEEEEECCEEEEEecCCC--
Q 007704 341 YLPMSSARSYASAAMLNGELYIFGGGDGNSWHNTVESYSPA--NDEWTSRPSLN-GTKGSLAGATIDNKIFAIGGGNG-- 415 (592)
Q Consensus 341 ~~p~p~~R~~~s~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~--t~~W~~l~~lp-~~r~~~~~~~~~~~Iyv~GG~~~-- 415 (592)
..++|.+|..+++++++++|||+||..+ +.+++||+. +++|..++++| .+|..+++++++++|||+||...
T Consensus 22 l~~lP~~~~~~~~~~~~~~iyv~gG~~~----~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~ 97 (376)
T PRK14131 22 LPDLPVPFKNGTGAIDNNTVYVGLGSAG----TSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTN 97 (376)
T ss_pred CCCCCcCccCCeEEEECCEEEEEeCCCC----CeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCC
Confidence 3478889998899999999999999754 458899986 47899999998 58999999999999999999754
Q ss_pred ----CcccceEEEEeCCCCeEEEccc-ccCcccceEEEE-ECCEEEEEeccCCC--------------------------
Q 007704 416 ----LECFSDVEMLDLDIGKWIRTRS-MLQKRFALAAAE-LNGVLYATGGYDGN-------------------------- 463 (592)
Q Consensus 416 ----~~~~~~v~~yD~~t~~W~~i~~-~p~~R~~~~a~~-~~g~IYV~GG~~~~-------------------------- 463 (592)
...++++|+||+.+++|+.+++ .|.++.+|++++ .+++||++||.+..
T Consensus 98 ~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~ 177 (376)
T PRK14131 98 SEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAY 177 (376)
T ss_pred CCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHH
Confidence 1346899999999999999985 477778888777 89999999997532
Q ss_pred --------CCCCeeEEEeCCCCeEEEeccCCC-CCceeEEEEECCEEEEEecCCCC-CCCCeEE--EEeCCCCeEEEcCC
Q 007704 464 --------EYMNSAERFDPREHYWTKIANMNR-RRGCHSLAVLNGKLYALGGFDGS-AMVPSIE--VYDPRLGSWMSGEP 531 (592)
Q Consensus 464 --------~~~~~v~~yD~~t~~W~~i~~~p~-~R~~~s~v~~~~~Lyv~GG~~~~-~~~~~v~--~yD~~t~~W~~v~~ 531 (592)
...+++++||+.+++|+.++++|. +|.+|+++.++++||++||.... ....+++ .||+.+++|..+.+
T Consensus 178 ~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~ 257 (376)
T PRK14131 178 FDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPD 257 (376)
T ss_pred hcCChhhcCcCceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCC
Confidence 124789999999999999999985 78889999999999999997533 2233444 56788999999999
Q ss_pred CCCCCcc--------eEEEEECCEEEEEecccCCCc----------------cccEEEEEcCC-CcEEEccccCCCCccc
Q 007704 532 MKLSRGY--------LGAAVVKEAIYVIGGVKNGSE----------------IVDTVERFKEG-QGWEEINSRAIGKRCF 586 (592)
Q Consensus 532 lp~~R~~--------~s~~v~~~~Iyv~GG~~~~~~----------------~~~~v~~Yd~~-~~W~~v~~~p~~~r~~ 586 (592)
||.+|.. +.+++++++|||+||.+.... ....+++||++ ++|+.++.+|.+ |..
T Consensus 258 ~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~-r~~ 336 (376)
T PRK14131 258 LPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQG-LAY 336 (376)
T ss_pred CCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCC-ccc
Confidence 9887642 235678999999999764211 01357899999 999999999998 555
Q ss_pred eEEEE
Q 007704 587 MSVVT 591 (592)
Q Consensus 587 ~savv 591 (592)
++|++
T Consensus 337 ~~av~ 341 (376)
T PRK14131 337 GVSVS 341 (376)
T ss_pred eEEEE
Confidence 66654
No 18
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=1.3e-32 Score=291.12 Aligned_cols=226 Identities=19% Similarity=0.247 Sum_probs=186.9
Q ss_pred CCC-ccCcceEEEEECCEEEEEeeCCCC------CCcceEEEEECCCCeEEECC-CCCCCCcceEEE-EECCEEEEEecC
Q 007704 343 PMS-SARSYASAAMLNGELYIFGGGDGN------SWHNTVESYSPANDEWTSRP-SLNGTKGSLAGA-TIDNKIFAIGGG 413 (592)
Q Consensus 343 p~p-~~R~~~s~v~~~~~Iyv~GG~~~~------~~~~~v~~yd~~t~~W~~l~-~lp~~r~~~~~~-~~~~~Iyv~GG~ 413 (592)
++| .+|..+++++++++|||+||.... ..++++++||+.+++|+.++ ++|.+|..++++ +++++||++||.
T Consensus 48 ~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~ 127 (346)
T TIGR03547 48 DFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGV 127 (346)
T ss_pred CCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCc
Confidence 567 589999999999999999997532 25789999999999999997 456677777776 689999999997
Q ss_pred CCCc----------------------------------ccceEEEEeCCCCeEEEcccccC-cccceEEEEECCEEEEEe
Q 007704 414 NGLE----------------------------------CFSDVEMLDLDIGKWIRTRSMLQ-KRFALAAAELNGVLYATG 458 (592)
Q Consensus 414 ~~~~----------------------------------~~~~v~~yD~~t~~W~~i~~~p~-~R~~~~a~~~~g~IYV~G 458 (592)
+... ..+++++|||.+++|+.+++||. +|.++++++++++|||+|
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~G 207 (346)
T TIGR03547 128 NKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLIN 207 (346)
T ss_pred ChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEe
Confidence 5320 24789999999999999999996 689999999999999999
Q ss_pred ccCCCCC-CCeeEEEe--CCCCeEEEeccCCCCC-------ceeEEEEECCEEEEEecCCCC-----------------C
Q 007704 459 GYDGNEY-MNSAERFD--PREHYWTKIANMNRRR-------GCHSLAVLNGKLYALGGFDGS-----------------A 511 (592)
Q Consensus 459 G~~~~~~-~~~v~~yD--~~t~~W~~i~~~p~~R-------~~~s~v~~~~~Lyv~GG~~~~-----------------~ 511 (592)
|...... ...++.|| +.+++|+.+++|+.+| .+|++++++++||++||.+.. .
T Consensus 208 G~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~ 287 (346)
T TIGR03547 208 GEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLI 287 (346)
T ss_pred eeeCCCccchheEEEEecCCCceeeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCC
Confidence 9864432 24455565 5778999999998765 356678889999999997521 1
Q ss_pred CCCeEEEEeCCCCeEEEcCCCCCCCcceEEEEECCEEEEEecccCCCccccEEEEEc
Q 007704 512 MVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVVKEAIYVIGGVKNGSEIVDTVERFK 568 (592)
Q Consensus 512 ~~~~v~~yD~~t~~W~~v~~lp~~R~~~s~~v~~~~Iyv~GG~~~~~~~~~~v~~Yd 568 (592)
....+++||+.+++|+.+.+||.+|..+++++++++|||+||.+..+..+++|+.|.
T Consensus 288 ~~~~~e~yd~~~~~W~~~~~lp~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~~ 344 (346)
T TIGR03547 288 KAWSSEVYALDNGKWSKVGKLPQGLAYGVSVSWNNGVLLIGGENSGGKAVTDVYLLS 344 (346)
T ss_pred ceeEeeEEEecCCcccccCCCCCCceeeEEEEcCCEEEEEeccCCCCCEeeeEEEEE
Confidence 124689999999999999999999999998899999999999988778889998764
No 19
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=1.1e-31 Score=287.39 Aligned_cols=233 Identities=19% Similarity=0.263 Sum_probs=190.3
Q ss_pred CCC-ccCcceEEEEECCEEEEEeeCCC------CCCcceEEEEECCCCeEEECCC-CCCCCcceEEEE-ECCEEEEEecC
Q 007704 343 PMS-SARSYASAAMLNGELYIFGGGDG------NSWHNTVESYSPANDEWTSRPS-LNGTKGSLAGAT-IDNKIFAIGGG 413 (592)
Q Consensus 343 p~p-~~R~~~s~v~~~~~Iyv~GG~~~------~~~~~~v~~yd~~t~~W~~l~~-lp~~r~~~~~~~-~~~~Iyv~GG~ 413 (592)
++| .+|.++++++++++|||+||... ...++++++||+.+++|+.+++ +|.++..|++++ .+++|||+||.
T Consensus 69 ~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~ 148 (376)
T PRK14131 69 AFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGV 148 (376)
T ss_pred cCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCC
Confidence 455 48999999999999999999764 1346899999999999999985 466677787777 79999999997
Q ss_pred CCC----------------------------------cccceEEEEeCCCCeEEEcccccC-cccceEEEEECCEEEEEe
Q 007704 414 NGL----------------------------------ECFSDVEMLDLDIGKWIRTRSMLQ-KRFALAAAELNGVLYATG 458 (592)
Q Consensus 414 ~~~----------------------------------~~~~~v~~yD~~t~~W~~i~~~p~-~R~~~~a~~~~g~IYV~G 458 (592)
... ...+++++||+.+++|+.++++|. +|.+++++.++++|||+|
T Consensus 149 ~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~G 228 (376)
T PRK14131 149 NKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLIN 228 (376)
T ss_pred CHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEe
Confidence 531 124789999999999999999996 788899999999999999
Q ss_pred ccCCCC-CCCeeE--EEeCCCCeEEEeccCCCCCc--------eeEEEEECCEEEEEecCCCCC----------------
Q 007704 459 GYDGNE-YMNSAE--RFDPREHYWTKIANMNRRRG--------CHSLAVLNGKLYALGGFDGSA---------------- 511 (592)
Q Consensus 459 G~~~~~-~~~~v~--~yD~~t~~W~~i~~~p~~R~--------~~s~v~~~~~Lyv~GG~~~~~---------------- 511 (592)
|..... ...+++ .||+++++|..+++||.+|. ++.+++++++|||+||.+...
T Consensus 229 G~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~ 308 (376)
T PRK14131 229 GEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGL 308 (376)
T ss_pred eeECCCcCChhheEEEecCCCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCC
Confidence 975432 233444 45788999999999987763 233567899999999975211
Q ss_pred -CCCeEEEEeCCCCeEEEcCCCCCCCcceEEEEECCEEEEEecccCCCccccEEEEEcCC-CcEEE
Q 007704 512 -MVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVVKEAIYVIGGVKNGSEIVDTVERFKEG-QGWEE 575 (592)
Q Consensus 512 -~~~~v~~yD~~t~~W~~v~~lp~~R~~~s~~v~~~~Iyv~GG~~~~~~~~~~v~~Yd~~-~~W~~ 575 (592)
....+++||+.+++|+.+++||.+|.++++++++++|||+||....+...++|++|++. .+|..
T Consensus 309 ~~~~~~e~yd~~~~~W~~~~~lp~~r~~~~av~~~~~iyv~GG~~~~~~~~~~v~~~~~~~~~~~~ 374 (376)
T PRK14131 309 KKSWSDEIYALVNGKWQKVGELPQGLAYGVSVSWNNGVLLIGGETAGGKAVSDVTLLSWDGKKLTV 374 (376)
T ss_pred cceeehheEEecCCcccccCcCCCCccceEEEEeCCEEEEEcCCCCCCcEeeeEEEEEEcCCEEEE
Confidence 11357899999999999999999999999999999999999987666788999999988 67764
No 20
>PHA03098 kelch-like protein; Provisional
Probab=99.97 E-value=1.6e-30 Score=290.68 Aligned_cols=229 Identities=20% Similarity=0.325 Sum_probs=196.2
Q ss_pred EEEEEeeCCCCCCcceEEEEECCCCeEEECCCCCCCCcceEEEEECCEEEEEecCCCCc-ccceEEEEeCCCCeEEEccc
Q 007704 359 ELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLE-CFSDVEMLDLDIGKWIRTRS 437 (592)
Q Consensus 359 ~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~lp~~r~~~~~~~~~~~Iyv~GG~~~~~-~~~~v~~yD~~t~~W~~i~~ 437 (592)
.+++.||.+ ..+..+..|+..+++|..+++++. +..|+++++++.||++||..... ..++++.||+.+++|..+++
T Consensus 252 ~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~ 328 (534)
T PHA03098 252 IIYIHITMS--IFTYNYITNYSPLSEINTIIDIHY-VYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPE 328 (534)
T ss_pred ceEeecccc--hhhceeeecchhhhhcccccCccc-cccceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCC
Confidence 455556644 234456789999999999876664 44578899999999999976543 56799999999999999999
Q ss_pred ccCcccceEEEEECCEEEEEeccCCCCCCCeeEEEeCCCCeEEEeccCCCCCceeEEEEECCEEEEEecCCCC-CCCCeE
Q 007704 438 MLQKRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGS-AMVPSI 516 (592)
Q Consensus 438 ~p~~R~~~~a~~~~g~IYV~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~~s~v~~~~~Lyv~GG~~~~-~~~~~v 516 (592)
|+.+|..|+++.++++||++||.+.....+++++||+.+++|+.++++|.+|..|++++++++||++||.... ..++++
T Consensus 329 ~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v 408 (534)
T PHA03098 329 LIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTV 408 (534)
T ss_pred CCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceE
Confidence 9999999999999999999999987777899999999999999999999999999999999999999997533 457899
Q ss_pred EEEeCCCCeEEEcCCCCCCCcceEEEEECCEEEEEecccCCCc--cccEEEEEcCC-CcEEEccccCCCCccceEEEE
Q 007704 517 EVYDPRLGSWMSGEPMKLSRGYLGAAVVKEAIYVIGGVKNGSE--IVDTVERFKEG-QGWEEINSRAIGKRCFMSVVT 591 (592)
Q Consensus 517 ~~yD~~t~~W~~v~~lp~~R~~~s~~v~~~~Iyv~GG~~~~~~--~~~~v~~Yd~~-~~W~~v~~~p~~~r~~~savv 591 (592)
++||+.+++|+.++++|.+|..+++++++++|||+||.+.... ..+.+++||+. ++|+.++.+|.+ |..+++++
T Consensus 409 ~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~-r~~~~~~~ 485 (534)
T PHA03098 409 ECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFP-RINASLCI 485 (534)
T ss_pred EEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcc-cccceEEE
Confidence 9999999999999999999999999999999999999865422 35679999999 999999999887 55555554
No 21
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.97 E-value=1.1e-30 Score=252.57 Aligned_cols=246 Identities=20% Similarity=0.321 Sum_probs=206.3
Q ss_pred ccCcceEEEEECCEEEEEeeCCC-----CCCcceEEEEECCCCeEEECCC-------------CCCCCcceEEEEECCEE
Q 007704 346 SARSYASAAMLNGELYIFGGGDG-----NSWHNTVESYSPANDEWTSRPS-------------LNGTKGSLAGATIDNKI 407 (592)
Q Consensus 346 ~~R~~~s~v~~~~~Iyv~GG~~~-----~~~~~~v~~yd~~t~~W~~l~~-------------lp~~r~~~~~~~~~~~I 407 (592)
..|..|+++.++..||-|||.-. ...--||.++|..+-+|+.+++ .|.-|++|+++.+++++
T Consensus 12 PrRVNHAavaVG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~ 91 (392)
T KOG4693|consen 12 PRRVNHAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKA 91 (392)
T ss_pred cccccceeeeecceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceE
Confidence 46889999999999999999542 2223479999999999999865 23449999999999999
Q ss_pred EEEecCCC-CcccceEEEEeCCCCeEEEc---ccccCcccceEEEEECCEEEEEeccCCC--CCCCeeEEEeCCCCeEEE
Q 007704 408 FAIGGGNG-LECFSDVEMLDLDIGKWIRT---RSMLQKRFALAAAELNGVLYATGGYDGN--EYMNSAERFDPREHYWTK 481 (592)
Q Consensus 408 yv~GG~~~-~~~~~~v~~yD~~t~~W~~i---~~~p~~R~~~~a~~~~g~IYV~GG~~~~--~~~~~v~~yD~~t~~W~~ 481 (592)
||.||... ...-+.++.|||+|++|.+. .-+|.+|-+|++|++++.+|||||+... ...++++++|..+.+|+.
T Consensus 92 yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~ 171 (392)
T KOG4693|consen 92 YVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWRE 171 (392)
T ss_pred EEEcCccCcccccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeee
Confidence 99999754 55678899999999999865 4688999999999999999999998654 678999999999999999
Q ss_pred ec---cCCCCCceeEEEEECCEEEEEecCCCC---------CCCCeEEEEeCCCCeEEEcC---CCCCCCcceEEEEECC
Q 007704 482 IA---NMNRRRGCHSLAVLNGKLYALGGFDGS---------AMVPSIEVYDPRLGSWMSGE---PMKLSRGYLGAAVVKE 546 (592)
Q Consensus 482 i~---~~p~~R~~~s~v~~~~~Lyv~GG~~~~---------~~~~~v~~yD~~t~~W~~v~---~lp~~R~~~s~~v~~~ 546 (592)
+. ..|.=|-.|+++++++.+|||||.... .+.+.+..+|..|..|.+-. -.|.+|..|++.+.++
T Consensus 172 ~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng 251 (392)
T KOG4693|consen 172 MHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNG 251 (392)
T ss_pred hhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEcc
Confidence 83 445667899999999999999997532 35678899999999999874 3577899999999999
Q ss_pred EEEEEecccCC-CccccEEEEEcCC-CcEEEcc---ccCCCCccceEEEE
Q 007704 547 AIYVIGGVKNG-SEIVDTVERFKEG-QGWEEIN---SRAIGKRCFMSVVT 591 (592)
Q Consensus 547 ~Iyv~GG~~~~-~~~~~~v~~Yd~~-~~W~~v~---~~p~~~r~~~savv 591 (592)
+||+|||+++. +.-.+++|+|||. ..|+.+. .-|..+|..|++++
T Consensus 252 ~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~ 301 (392)
T KOG4693|consen 252 KMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVVS 301 (392)
T ss_pred eEEEecccchhhhhhhcceeecccccchheeeeccCCCCCcccceeEEEE
Confidence 99999999864 3468999999999 9999983 36777666666653
No 22
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.97 E-value=6.9e-30 Score=280.54 Aligned_cols=238 Identities=18% Similarity=0.314 Sum_probs=211.8
Q ss_pred CCCccCcceEEEEECCEEEEEeeCCCCCCcc--eEEEEECCCCeEEEC---CCCCCCCcceEEEEECCEEEEEecCCC-C
Q 007704 343 PMSSARSYASAAMLNGELYIFGGGDGNSWHN--TVESYSPANDEWTSR---PSLNGTKGSLAGATIDNKIFAIGGGNG-L 416 (592)
Q Consensus 343 p~p~~R~~~s~v~~~~~Iyv~GG~~~~~~~~--~v~~yd~~t~~W~~l---~~lp~~r~~~~~~~~~~~Iyv~GG~~~-~ 416 (592)
..|.+|..|+++.+++++|||||........ ++|++|..+..|... ...|.+|++|++++++++||+|||.+. .
T Consensus 56 ~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~ 135 (482)
T KOG0379|consen 56 VGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKY 135 (482)
T ss_pred CCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCCC
Confidence 4678999999999999999999977544444 499999999999765 446789999999999999999999874 5
Q ss_pred cccceEEEEeCCCCeEEEcc---cccCcccceEEEEECCEEEEEeccCCCC-CCCeeEEEeCCCCeEEEe---ccCCCCC
Q 007704 417 ECFSDVEMLDLDIGKWIRTR---SMLQKRFALAAAELNGVLYATGGYDGNE-YMNSAERFDPREHYWTKI---ANMNRRR 489 (592)
Q Consensus 417 ~~~~~v~~yD~~t~~W~~i~---~~p~~R~~~~a~~~~g~IYV~GG~~~~~-~~~~v~~yD~~t~~W~~i---~~~p~~R 489 (592)
..+++++.||+.|++|+.+. ..|.+|.+|+++++++++|||||.+... ..+++|+||+++.+|.++ +..|.||
T Consensus 136 ~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR 215 (482)
T KOG0379|consen 136 RNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPR 215 (482)
T ss_pred CChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCC
Confidence 56889999999999999764 5689999999999999999999998776 899999999999999998 4668899
Q ss_pred ceeEEEEECCEEEEEecCC-CCCCCCeEEEEeCCCCeEEEc---CCCCCCCcceEEEEECCEEEEEecccCCCc-cccEE
Q 007704 490 GCHSLAVLNGKLYALGGFD-GSAMVPSIEVYDPRLGSWMSG---EPMKLSRGYLGAAVVKEAIYVIGGVKNGSE-IVDTV 564 (592)
Q Consensus 490 ~~~s~v~~~~~Lyv~GG~~-~~~~~~~v~~yD~~t~~W~~v---~~lp~~R~~~s~~v~~~~Iyv~GG~~~~~~-~~~~v 564 (592)
.+|++++++++++++||.+ +..+++|++.+|+.+..|..+ +.+|.+|.+|++++.++.++|+||...... .+.++
T Consensus 216 ~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~~~~~~~l~gG~~~~~~~~l~~~ 295 (482)
T KOG0379|consen 216 YGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTVSGDHLLLFGGGTDPKQEPLGDL 295 (482)
T ss_pred CCceEEEECCeEEEEeccccCCceecceEeeecccceeeeccccCCCCCCcceeeeEEECCEEEEEcCCccccccccccc
Confidence 9999999999999999988 678999999999999999976 468999999999999999999999877544 78999
Q ss_pred EEEcCC-CcEEEccccC
Q 007704 565 ERFKEG-QGWEEINSRA 580 (592)
Q Consensus 565 ~~Yd~~-~~W~~v~~~p 580 (592)
|.||.. ..|..+....
T Consensus 296 ~~l~~~~~~w~~~~~~~ 312 (482)
T KOG0379|consen 296 YGLDLETLVWSKVESVG 312 (482)
T ss_pred ccccccccceeeeeccc
Confidence 999999 9999886544
No 23
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.97 E-value=1.6e-30 Score=251.53 Aligned_cols=213 Identities=21% Similarity=0.416 Sum_probs=187.8
Q ss_pred CCccCcceEEEEECCEEEEEeeCCC-CCCcceEEEEECCCCeEEEC---CCCCCCCcceEEEEECCEEEEEecCCC--Cc
Q 007704 344 MSSARSYASAAMLNGELYIFGGGDG-NSWHNTVESYSPANDEWTSR---PSLNGTKGSLAGATIDNKIFAIGGGNG--LE 417 (592)
Q Consensus 344 ~p~~R~~~s~v~~~~~Iyv~GG~~~-~~~~~~v~~yd~~t~~W~~l---~~lp~~r~~~~~~~~~~~Iyv~GG~~~--~~ 417 (592)
.|--|++|++|.+++++||.||.++ ....|.+++||+.+++|.+. ...|.+|-+|++|++++.+|||||+.. ..
T Consensus 75 VPyqRYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~ 154 (392)
T KOG4693|consen 75 VPYQRYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQR 154 (392)
T ss_pred cchhhcCceEEEEcceEEEEcCccCcccccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHh
Confidence 4667999999999999999999886 77889999999999999764 568999999999999999999999743 45
Q ss_pred ccceEEEEeCCCCeEEEcc---cccCcccceEEEEECCEEEEEeccCCC---------CCCCeeEEEeCCCCeEEEecc-
Q 007704 418 CFSDVEMLDLDIGKWIRTR---SMLQKRFALAAAELNGVLYATGGYDGN---------EYMNSAERFDPREHYWTKIAN- 484 (592)
Q Consensus 418 ~~~~v~~yD~~t~~W~~i~---~~p~~R~~~~a~~~~g~IYV~GG~~~~---------~~~~~v~~yD~~t~~W~~i~~- 484 (592)
..+++..+|..|.+|+.+. +.|.=|--|+++++++.+|||||..+. .|-+.+..+|++++.|.+.++
T Consensus 155 FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~ 234 (392)
T KOG4693|consen 155 FSQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPEN 234 (392)
T ss_pred hhccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCC
Confidence 6789999999999999874 445667889999999999999997543 456788999999999998853
Q ss_pred --CCCCCceeEEEEECCEEEEEecCCCC--CCCCeEEEEeCCCCeEEEcC---CCCCCCcceEEEEECCEEEEEecccC
Q 007704 485 --MNRRRGCHSLAVLNGKLYALGGFDGS--AMVPSIEVYDPRLGSWMSGE---PMKLSRGYLGAAVVKEAIYVIGGVKN 556 (592)
Q Consensus 485 --~p~~R~~~s~v~~~~~Lyv~GG~~~~--~~~~~v~~yD~~t~~W~~v~---~lp~~R~~~s~~v~~~~Iyv~GG~~~ 556 (592)
.|.+|..|++.+++++||+|||+++. .-++++|.|||.+..|..+. .-|.+|.-+++++.++++|+|||.+-
T Consensus 235 ~~~P~GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~g~kv~LFGGTsP 313 (392)
T KOG4693|consen 235 TMKPGGRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVVSGGKVYLFGGTSP 313 (392)
T ss_pred CcCCCcccccceEEEcceEEEecccchhhhhhhcceeecccccchheeeeccCCCCCcccceeEEEECCEEEEecCCCC
Confidence 57899999999999999999999876 56899999999999999874 67889999999999999999999863
No 24
>PHA02790 Kelch-like protein; Provisional
Probab=99.97 E-value=2.7e-29 Score=276.77 Aligned_cols=187 Identities=28% Similarity=0.431 Sum_probs=168.6
Q ss_pred cccccCCCcccc---CCCccCcceEEEEECCEEEEEeeCCCCCCcceEEEEECCCCeEEECCCCCCCCcceEEEEECCEE
Q 007704 331 ELHLDPSESIYL---PMSSARSYASAAMLNGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATIDNKI 407 (592)
Q Consensus 331 ~~~~~p~~~~~~---p~p~~R~~~s~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~lp~~r~~~~~~~~~~~I 407 (592)
.+.++|....|. +||.+|..+++++++++||++||.++. +++++||+.+++|..+++||.+|..|++++++|+|
T Consensus 289 v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~---~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~I 365 (480)
T PHA02790 289 AIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNP---TSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVI 365 (480)
T ss_pred EEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCC---CceEEEECCCCeEEECCCCCCCCcccEEEEECCEE
Confidence 345777776665 678899999999999999999997642 57999999999999999999999999999999999
Q ss_pred EEEecCCCCcccceEEEEeCCCCeEEEcccccCcccceEEEEECCEEEEEeccCCCCCCCeeEEEeCCCCeEEEeccCCC
Q 007704 408 FAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNR 487 (592)
Q Consensus 408 yv~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~~~a~~~~g~IYV~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~ 487 (592)
||+||.++. .+.+++|||.+++|+.+++|+.+|..+++++++|+|||+||. +++|||++++|+.+++|+.
T Consensus 366 YviGG~~~~--~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG~--------~e~ydp~~~~W~~~~~m~~ 435 (480)
T PHA02790 366 YVIGGHSET--DTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGRN--------AEFYCESSNTWTLIDDPIY 435 (480)
T ss_pred EEecCcCCC--CccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECCc--------eEEecCCCCcEeEcCCCCC
Confidence 999997543 368999999999999999999999999999999999999983 6899999999999999999
Q ss_pred CCceeEEEEECCEEEEEecCCCCCCCCeEEEEeCCCCeEEEcC
Q 007704 488 RRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGE 530 (592)
Q Consensus 488 ~R~~~s~v~~~~~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~ 530 (592)
+|..+++++++++||++||+++....+++++||+.+++|+...
T Consensus 436 ~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~~~~ 478 (480)
T PHA02790 436 PRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYSWNIWD 478 (480)
T ss_pred CccccEEEEECCEEEEECCcCCCcccceEEEEECCCCeEEecC
Confidence 9999999999999999999876666788999999999998753
No 25
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.93 E-value=9e-26 Score=234.14 Aligned_cols=248 Identities=19% Similarity=0.313 Sum_probs=202.5
Q ss_pred cCCCccCcceEEEEECCEEEEEeeCCCCCCcceEEEEECCCCeEEE---CCCCCCCCcceEEEEECCEEEEEecCCCC-c
Q 007704 342 LPMSSARSYASAAMLNGELYIFGGGDGNSWHNTVESYSPANDEWTS---RPSLNGTKGSLAGATIDNKIFAIGGGNGL-E 417 (592)
Q Consensus 342 ~p~p~~R~~~s~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~---l~~lp~~r~~~~~~~~~~~Iyv~GG~~~~-~ 417 (592)
.|.|.||++|.+|++..-|.||||.+. ...+++.+||..+++|.. ..+.|.+...|..++.+.+||+|||.... .
T Consensus 27 GPvPrpRHGHRAVaikELiviFGGGNE-GiiDELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtrilvFGGMvEYGk 105 (830)
T KOG4152|consen 27 GPVPRPRHGHRAVAIKELIVIFGGGNE-GIIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTRILVFGGMVEYGK 105 (830)
T ss_pred CCCCCccccchheeeeeeEEEecCCcc-cchhhhhhhccccceeecchhcCCCCCchhhcceEecCceEEEEccEeeecc
Confidence 488999999999999999999999774 456889999999999964 36788889999999999999999996543 3
Q ss_pred ccceEEEEeCCCCeEEEcc-------cccCcccceEEEEECCEEEEEeccCC---------CCCCCeeEEEeCCCCe---
Q 007704 418 CFSDVEMLDLDIGKWIRTR-------SMLQKRFALAAAELNGVLYATGGYDG---------NEYMNSAERFDPREHY--- 478 (592)
Q Consensus 418 ~~~~v~~yD~~t~~W~~i~-------~~p~~R~~~~a~~~~g~IYV~GG~~~---------~~~~~~v~~yD~~t~~--- 478 (592)
+.+++|.+.-..-.|+++. ..|.||-+|+..+++++-|+|||... ..|++|+|+.++.-+.
T Consensus 106 YsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv 185 (830)
T KOG4152|consen 106 YSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVV 185 (830)
T ss_pred ccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceE
Confidence 5667666665555666652 46789999999999999999999532 2689999999988553
Q ss_pred -EEEe---ccCCCCCceeEEEEE------CCEEEEEecCCCCCCCCeEEEEeCCCCeEEEcC---CCCCCCcceEEEEEC
Q 007704 479 -WTKI---ANMNRRRGCHSLAVL------NGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGE---PMKLSRGYLGAAVVK 545 (592)
Q Consensus 479 -W~~i---~~~p~~R~~~s~v~~------~~~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~---~lp~~R~~~s~~v~~ 545 (592)
|... +.+|.+|..|++|.+ ..++||+||.++. .+.|+|.+|+++.+|.+.. -.|.||+.|++++++
T Consensus 186 ~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~-RLgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~IG 264 (830)
T KOG4152|consen 186 AWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGC-RLGDLWTLDLDTLTWNKPSLSGVAPLPRSLHSATTIG 264 (830)
T ss_pred EEecccccCCCCCCcccceeEEEEeccCCcceEEEEcccccc-cccceeEEecceeecccccccCCCCCCcccccceeec
Confidence 8765 678999999999998 3579999998764 5789999999999999863 578899999999999
Q ss_pred CEEEEEecccC-------------CCccccEEEEEcCC-CcEEEc-----cc--cCCCCccceEEEEC
Q 007704 546 EAIYVIGGVKN-------------GSEIVDTVERFKEG-QGWEEI-----NS--RAIGKRCFMSVVTV 592 (592)
Q Consensus 546 ~~Iyv~GG~~~-------------~~~~~~~v~~Yd~~-~~W~~v-----~~--~p~~~r~~~savvl 592 (592)
+++|||||.-- +-...+++-+++++ ..|..+ ++ .|-+ |..|||+.+
T Consensus 265 nKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR~-RAGHCAvAi 331 (830)
T KOG4152|consen 265 NKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPRA-RAGHCAVAI 331 (830)
T ss_pred ceeEEecceeeeeccccccccccceeeeccceeeeeecchheeeeeeccccccccccc-cccceeEEe
Confidence 99999999631 12356778889998 999876 22 4555 777777764
No 26
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.93 E-value=1.2e-24 Score=239.20 Aligned_cols=202 Identities=21% Similarity=0.344 Sum_probs=177.9
Q ss_pred CCCCCCCcceEEEEECCEEEEEecCCCCcccce--EEEEeCCCCeEEEc---ccccCcccceEEEEECCEEEEEeccCC-
Q 007704 389 PSLNGTKGSLAGATIDNKIFAIGGGNGLECFSD--VEMLDLDIGKWIRT---RSMLQKRFALAAAELNGVLYATGGYDG- 462 (592)
Q Consensus 389 ~~lp~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~--v~~yD~~t~~W~~i---~~~p~~R~~~~a~~~~g~IYV~GG~~~- 462 (592)
...|.+|..|+++.+++++|||||........+ +|++|..+..|... ...|.+|++|+++.++++||+|||.+.
T Consensus 55 ~~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~ 134 (482)
T KOG0379|consen 55 GVGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKK 134 (482)
T ss_pred CCCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCC
Confidence 456888999999999999999999876655555 99999999999875 356789999999999999999999985
Q ss_pred CCCCCeeEEEeCCCCeEEEe---ccCCCCCceeEEEEECCEEEEEecCCCCC-CCCeEEEEeCCCCeEEEc---CCCCCC
Q 007704 463 NEYMNSAERFDPREHYWTKI---ANMNRRRGCHSLAVLNGKLYALGGFDGSA-MVPSIEVYDPRLGSWMSG---EPMKLS 535 (592)
Q Consensus 463 ~~~~~~v~~yD~~t~~W~~i---~~~p~~R~~~s~v~~~~~Lyv~GG~~~~~-~~~~v~~yD~~t~~W~~v---~~lp~~ 535 (592)
...+++++.||+.+++|..+ ...|.+|.+|++++++++||||||.+... ..+++|+||+.+.+|.++ ++.|.|
T Consensus 135 ~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~p 214 (482)
T KOG0379|consen 135 YRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSP 214 (482)
T ss_pred CCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCC
Confidence 56789999999999999987 34689999999999999999999988765 899999999999999997 477889
Q ss_pred CcceEEEEECCEEEEEecccCCCccccEEEEEcCC-CcEEEcc---ccCCCCccceEEEE
Q 007704 536 RGYLGAAVVKEAIYVIGGVKNGSEIVDTVERFKEG-QGWEEIN---SRAIGKRCFMSVVT 591 (592)
Q Consensus 536 R~~~s~~v~~~~Iyv~GG~~~~~~~~~~v~~Yd~~-~~W~~v~---~~p~~~r~~~savv 591 (592)
|.+|++++++++++||||.+....+++|+|.+|.. ..|..+. ..|.+ |..|+.++
T Consensus 215 R~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~-R~~h~~~~ 273 (482)
T KOG0379|consen 215 RYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSP-RSGHSLTV 273 (482)
T ss_pred CCCceEEEECCeEEEEeccccCCceecceEeeecccceeeeccccCCCCCC-cceeeeEE
Confidence 99999999999999999998666899999999999 9999764 35555 77777664
No 27
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.90 E-value=4.7e-23 Score=210.18 Aligned_cols=203 Identities=18% Similarity=0.263 Sum_probs=166.6
Q ss_pred CCCCCCCcceEEEEE--CCEEEEEecC--CC--CcccceEEEEeCCCCeEEEc--ccccCcccceEEEEEC-CEEEEEec
Q 007704 389 PSLNGTKGSLAGATI--DNKIFAIGGG--NG--LECFSDVEMLDLDIGKWIRT--RSMLQKRFALAAAELN-GVLYATGG 459 (592)
Q Consensus 389 ~~lp~~r~~~~~~~~--~~~Iyv~GG~--~~--~~~~~~v~~yD~~t~~W~~i--~~~p~~R~~~~a~~~~-g~IYV~GG 459 (592)
.+.|.||.++++.+. .+.+++|||. ++ ...+++++.||..+++|+++ ++.|.||++|.++++- |.+|+|||
T Consensus 61 ~~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGG 140 (521)
T KOG1230|consen 61 VPPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGG 140 (521)
T ss_pred CCCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEecc
Confidence 356788999888876 5689999994 22 23679999999999999986 5778999999999884 89999999
Q ss_pred cCCC------CCCCeeEEEeCCCCeEEEe--ccCCCCCceeEEEEECCEEEEEecCCCC----CCCCeEEEEeCCCCeEE
Q 007704 460 YDGN------EYMNSAERFDPREHYWTKI--ANMNRRRGCHSLAVLNGKLYALGGFDGS----AMVPSIEVYDPRLGSWM 527 (592)
Q Consensus 460 ~~~~------~~~~~v~~yD~~t~~W~~i--~~~p~~R~~~s~v~~~~~Lyv~GG~~~~----~~~~~v~~yD~~t~~W~ 527 (592)
--.. ....|+|+||+.+++|+++ +..|++|++|-|++.+.+|++|||+... .++||+|+||+++-+|.
T Consensus 141 EfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~ 220 (521)
T KOG1230|consen 141 EFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWS 220 (521)
T ss_pred ccCCcchhhhhhhhheeeeeeccchheeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeee
Confidence 5332 2357999999999999998 4679999999999999999999997533 57899999999999999
Q ss_pred EcCC---CCCCCcceEEEEE-CCEEEEEecccCC--------CccccEEEEEcCC------CcEEEccc--cCCCCccce
Q 007704 528 SGEP---MKLSRGYLGAAVV-KEAIYVIGGVKNG--------SEIVDTVERFKEG------QGWEEINS--RAIGKRCFM 587 (592)
Q Consensus 528 ~v~~---lp~~R~~~s~~v~-~~~Iyv~GG~~~~--------~~~~~~v~~Yd~~------~~W~~v~~--~p~~~r~~~ 587 (592)
.+.+ .|.||+++++.+. ++.|||+||++.. +...+|+|..+|. ..|..+.+ ++..+|...
T Consensus 221 Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgf 300 (521)
T KOG1230|consen 221 KLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGF 300 (521)
T ss_pred eccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCce
Confidence 9853 5889999999988 9999999998742 5678999999976 35777743 444447666
Q ss_pred EEEE
Q 007704 588 SVVT 591 (592)
Q Consensus 588 savv 591 (592)
+++|
T Consensus 301 sv~v 304 (521)
T KOG1230|consen 301 SVAV 304 (521)
T ss_pred eEEE
Confidence 6654
No 28
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.88 E-value=6.9e-22 Score=205.47 Aligned_cols=225 Identities=16% Similarity=0.224 Sum_probs=183.7
Q ss_pred CCCccCcceEEEEECCEEEEEeeCCC-CCCcceEEEEECCCCeEEECC-------CCCCCCcceEEEEECCEEEEEecCC
Q 007704 343 PMSSARSYASAAMLNGELYIFGGGDG-NSWHNTVESYSPANDEWTSRP-------SLNGTKGSLAGATIDNKIFAIGGGN 414 (592)
Q Consensus 343 p~p~~R~~~s~v~~~~~Iyv~GG~~~-~~~~~~v~~yd~~t~~W~~l~-------~lp~~r~~~~~~~~~~~Iyv~GG~~ 414 (592)
..|.+-..|.++..+.+||+|||... +.+.|++|.+-.....|+++. .+|.||-+|+...++++.|+|||..
T Consensus 77 DiPpgcAA~GfvcdGtrilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLa 156 (830)
T KOG4152|consen 77 DIPPGCAAFGFVCDGTRILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLA 156 (830)
T ss_pred CCCCchhhcceEecCceEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEecccc
Confidence 56667778888999999999999765 667889888888888888873 3678999999999999999999952
Q ss_pred C---------CcccceEEEEeCCCC----eEEEc---ccccCcccceEEEEE------CCEEEEEeccCCCCCCCeeEEE
Q 007704 415 G---------LECFSDVEMLDLDIG----KWIRT---RSMLQKRFALAAAEL------NGVLYATGGYDGNEYMNSAERF 472 (592)
Q Consensus 415 ~---------~~~~~~v~~yD~~t~----~W~~i---~~~p~~R~~~~a~~~------~g~IYV~GG~~~~~~~~~v~~y 472 (592)
+ -.+++|+|+.++.-+ -|... ..+|.+|..|.++.+ ..++||+||.++-. +.|+|.+
T Consensus 157 NdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~R-LgDLW~L 235 (830)
T KOG4152|consen 157 NDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGCR-LGDLWTL 235 (830)
T ss_pred ccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEccccccc-ccceeEE
Confidence 2 126889999988744 37653 478999999999998 45799999988654 7899999
Q ss_pred eCCCCeEEEe---ccCCCCCceeEEEEECCEEEEEecCC--------------CCCCCCeEEEEeCCCCeEEEcC-----
Q 007704 473 DPREHYWTKI---ANMNRRRGCHSLAVLNGKLYALGGFD--------------GSAMVPSIEVYDPRLGSWMSGE----- 530 (592)
Q Consensus 473 D~~t~~W~~i---~~~p~~R~~~s~v~~~~~Lyv~GG~~--------------~~~~~~~v~~yD~~t~~W~~v~----- 530 (592)
|+++.+|.+. +-.|-+|+-|+++.+++++|||||+- ..+..+++-++++++..|+.+-
T Consensus 236 dl~Tl~W~kp~~~G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~e 315 (830)
T KOG4152|consen 236 DLDTLTWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLE 315 (830)
T ss_pred ecceeecccccccCCCCCCcccccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchheeeeeecccc
Confidence 9999999987 45678999999999999999999952 1145678889999999999862
Q ss_pred --CCCCCCcceEEEEECCEEEEEecccCCC------ccccEEEEEc
Q 007704 531 --PMKLSRGYLGAAVVKEAIYVIGGVKNGS------EIVDTVERFK 568 (592)
Q Consensus 531 --~lp~~R~~~s~~v~~~~Iyv~GG~~~~~------~~~~~v~~Yd 568 (592)
..|.+|.+|+++.++.++|+..|.++-. ....|+|..|
T Consensus 316 d~tiPR~RAGHCAvAigtRlYiWSGRDGYrKAwnnQVCCkDlWyLd 361 (830)
T KOG4152|consen 316 DNTIPRARAGHCAVAIGTRLYIWSGRDGYRKAWNNQVCCKDLWYLD 361 (830)
T ss_pred ccccccccccceeEEeccEEEEEeccchhhHhhccccchhhhhhhc
Confidence 4789999999999999999999976521 2445566665
No 29
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.68 E-value=2.2e-15 Score=152.81 Aligned_cols=221 Identities=19% Similarity=0.262 Sum_probs=167.5
Q ss_pred ccCcceEEEEECCEEEEEeeCCC-----CCCcceEEEEECCCCeEEECCC-CCCCCcceEEEEECC-EEEEEecCCC---
Q 007704 346 SARSYASAAMLNGELYIFGGGDG-----NSWHNTVESYSPANDEWTSRPS-LNGTKGSLAGATIDN-KIFAIGGGNG--- 415 (592)
Q Consensus 346 ~~R~~~s~v~~~~~Iyv~GG~~~-----~~~~~~v~~yd~~t~~W~~l~~-lp~~r~~~~~~~~~~-~Iyv~GG~~~--- 415 (592)
.+|....+++++++||||||... .+.++++|+|||.+++|..+.. .|.....++++++++ +||++||...
T Consensus 81 ~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if 160 (381)
T COG3055 81 GARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIF 160 (381)
T ss_pred cccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCChhheeccccccccccceeEecCCceEEEEccccHHhh
Confidence 57999999999999999999653 4568999999999999999854 345567788888877 9999999410
Q ss_pred -------------------------------CcccceEEEEeCCCCeEEEcccccC-cccceEEEEECCEEEEEeccCCC
Q 007704 416 -------------------------------LECFSDVEMLDLDIGKWIRTRSMLQ-KRFALAAAELNGVLYATGGYDGN 463 (592)
Q Consensus 416 -------------------------------~~~~~~v~~yD~~t~~W~~i~~~p~-~R~~~~a~~~~g~IYV~GG~~~~ 463 (592)
......++.|+|.+++|+.+...|. ++++.+.+.-++++.++-|.-..
T Consensus 161 ~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~aGsa~~~~~n~~~lInGEiKp 240 (381)
T COG3055 161 NGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPFYGNAGSAVVIKGNKLTLINGEIKP 240 (381)
T ss_pred hhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCcCcccCccCcceeecCCeEEEEcceecC
Confidence 1134578999999999999886664 66665555557778888886443
Q ss_pred C-CCCeeEEEeCC--CCeEEEeccCCCCC-------ceeEEEEECCEEEEEecCCC-------------------CCCCC
Q 007704 464 E-YMNSAERFDPR--EHYWTKIANMNRRR-------GCHSLAVLNGKLYALGGFDG-------------------SAMVP 514 (592)
Q Consensus 464 ~-~~~~v~~yD~~--t~~W~~i~~~p~~R-------~~~s~v~~~~~Lyv~GG~~~-------------------~~~~~ 514 (592)
. ....+.+++.. ..+|..++++|.+- .++..-..++.+.+.||-.- ....+
T Consensus 241 GLRt~~~k~~~~~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~ 320 (381)
T COG3055 241 GLRTAEVKQADFGGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNS 320 (381)
T ss_pred CccccceeEEEeccCceeeeeccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhc
Confidence 2 22345556654 55799998776443 22333344788888888421 02456
Q ss_pred eEEEEeCCCCeEEEcCCCCCCCcceEEEEECCEEEEEecccCCCccccEEEEEc
Q 007704 515 SIEVYDPRLGSWMSGEPMKLSRGYLGAAVVKEAIYVIGGVKNGSEIVDTVERFK 568 (592)
Q Consensus 515 ~v~~yD~~t~~W~~v~~lp~~R~~~s~~v~~~~Iyv~GG~~~~~~~~~~v~~Yd 568 (592)
+|+.|| .+.|+.++.||.++.+...+..++.+|++||....+..+..|+..-
T Consensus 321 ~Vy~~d--~g~Wk~~GeLp~~l~YG~s~~~nn~vl~IGGE~~~Gka~~~v~~l~ 372 (381)
T COG3055 321 EVYIFD--NGSWKIVGELPQGLAYGVSLSYNNKVLLIGGETSGGKATTRVYSLS 372 (381)
T ss_pred eEEEEc--CCceeeecccCCCccceEEEecCCcEEEEccccCCCeeeeeEEEEE
Confidence 889998 8999999999999999999999999999999998888777776544
No 30
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.61 E-value=4.6e-14 Score=143.28 Aligned_cols=242 Identities=16% Similarity=0.271 Sum_probs=179.5
Q ss_pred CCCccCcceEEEEECCEEEEEeeCCCCCCcceEEEEECCC--CeEEECCCCC-CCCcceEEEEECCEEEEEecCCC----
Q 007704 343 PMSSARSYASAAMLNGELYIFGGGDGNSWHNTVESYSPAN--DEWTSRPSLN-GTKGSLAGATIDNKIFAIGGGNG---- 415 (592)
Q Consensus 343 p~p~~R~~~s~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t--~~W~~l~~lp-~~r~~~~~~~~~~~Iyv~GG~~~---- 415 (592)
.+|.+--.-+-+..++.+||-=|..+.. .+..|... ..|++++..| .+|....++.++++||||||...
T Consensus 32 dlPvg~KnG~Ga~ig~~~YVGLGs~G~a----fy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~ 107 (381)
T COG3055 32 DLPVGFKNGAGALIGDTVYVGLGSAGTA----FYVLDLKKPGKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGKSVSS 107 (381)
T ss_pred CCCccccccccceecceEEEEeccCCcc----ceehhhhcCCCCceEcccCCCcccccchheeeCCeEEEeeccccCCCC
Confidence 4566655567777888999987755533 46666654 5899999988 56888999999999999999632
Q ss_pred -CcccceEEEEeCCCCeEEEcc-cccCcccceEEEEECC-EEEEEeccCCC-----------------------------
Q 007704 416 -LECFSDVEMLDLDIGKWIRTR-SMLQKRFALAAAELNG-VLYATGGYDGN----------------------------- 463 (592)
Q Consensus 416 -~~~~~~v~~yD~~t~~W~~i~-~~p~~R~~~~a~~~~g-~IYV~GG~~~~----------------------------- 463 (592)
...++++++|||.+++|+++. ..|....++.++.+++ +||++||++..
T Consensus 108 ~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~ 187 (381)
T COG3055 108 SPQVFNDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDK 187 (381)
T ss_pred CceEeeeeEEecCCCChhheeccccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCC
Confidence 235789999999999999986 3466678888888887 99999996321
Q ss_pred -----CCCCeeEEEeCCCCeEEEeccCC-CCCceeEEEEECCEEEEEecCCCC-CCCCeEEEEeCC--CCeEEEcCCCCC
Q 007704 464 -----EYMNSAERFDPREHYWTKIANMN-RRRGCHSLAVLNGKLYALGGFDGS-AMVPSIEVYDPR--LGSWMSGEPMKL 534 (592)
Q Consensus 464 -----~~~~~v~~yD~~t~~W~~i~~~p-~~R~~~s~v~~~~~Lyv~GG~~~~-~~~~~v~~yD~~--t~~W~~v~~lp~ 534 (592)
.....+..|||.++.|+.+...| .++++.+.+.-++++.++-|.-.. .....+.+++.. ..+|..++++|.
T Consensus 188 ~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~ 267 (381)
T COG3055 188 KAEDYFFNKEVLSYDPSTNQWRNLGENPFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPA 267 (381)
T ss_pred CHHHhcccccccccccccchhhhcCcCcccCccCcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCC
Confidence 12456889999999999998766 566665555558888888886543 334556666654 558999998877
Q ss_pred CCcce-------EEEEECCEEEEEecccCC------------------CccccEEEEEcCCCcEEEccccCCCCccceEE
Q 007704 535 SRGYL-------GAAVVKEAIYVIGGVKNG------------------SEIVDTVERFKEGQGWEEINSRAIGKRCFMSV 589 (592)
Q Consensus 535 ~R~~~-------s~~v~~~~Iyv~GG~~~~------------------~~~~~~v~~Yd~~~~W~~v~~~p~~~r~~~sa 589 (592)
+-..- -.-..++.++|.||-+-. -...++||.|| +..|..++.+|.+ +++..+
T Consensus 268 ~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d-~g~Wk~~GeLp~~-l~YG~s 345 (381)
T COG3055 268 PIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD-NGSWKIVGELPQG-LAYGVS 345 (381)
T ss_pred CCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc-CCceeeecccCCC-ccceEE
Confidence 64332 112347888999986532 12577899999 5999999999996 777665
Q ss_pred E
Q 007704 590 V 590 (592)
Q Consensus 590 v 590 (592)
+
T Consensus 346 ~ 346 (381)
T COG3055 346 L 346 (381)
T ss_pred E
Confidence 5
No 31
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.61 E-value=4.8e-16 Score=162.18 Aligned_cols=234 Identities=18% Similarity=0.215 Sum_probs=173.3
Q ss_pred CCCccCcceEEEEECC--EEEEEeeCCCCCCcceEEEEECCCCeEEEC---CCCCCCCcceEEEEECC--EEEEEecCCC
Q 007704 343 PMSSARSYASAAMLNG--ELYIFGGGDGNSWHNTVESYSPANDEWTSR---PSLNGTKGSLAGATIDN--KIFAIGGGNG 415 (592)
Q Consensus 343 p~p~~R~~~s~v~~~~--~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l---~~lp~~r~~~~~~~~~~--~Iyv~GG~~~ 415 (592)
--|+.|.+|.+|...+ .||+.||++|-..+.|.|.|+...+.|..+ ...|..|++|.++..-. ++|+.|-+-+
T Consensus 256 ~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCHRMVid~S~~KLYLlG~Y~~ 335 (723)
T KOG2437|consen 256 NRPGMRGGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDTEGPGARSCHRMVIDISRRKLYLLGRYLD 335 (723)
T ss_pred cCccccCcceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcceeEEeecCCCCCcchhhhhhhhhhhHhHHhhhhhccc
Confidence 4578999999999855 899999999999999999999999999887 44789999999998754 8999998522
Q ss_pred ------CcccceEEEEeCCCCeEEEcc------cccCcccceEEEEECCE--EEEEeccCCC---CCCCeeEEEeCCCCe
Q 007704 416 ------LECFSDVEMLDLDIGKWIRTR------SMLQKRFALAAAELNGV--LYATGGYDGN---EYMNSAERFDPREHY 478 (592)
Q Consensus 416 ------~~~~~~v~~yD~~t~~W~~i~------~~p~~R~~~~a~~~~g~--IYV~GG~~~~---~~~~~v~~yD~~t~~ 478 (592)
...-+|+|.||..++.|..++ .-|..-+.|.|++.+.+ |||+||.... ..+..+++||.....
T Consensus 336 sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~~ 415 (723)
T KOG2437|consen 336 SSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRILTCNEPQFSGLYAFNCQCQT 415 (723)
T ss_pred cccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCeeccCCCccccceEEEecCCcc
Confidence 234579999999999999774 34566789999999887 9999997433 457889999999999
Q ss_pred EEEecc----------CCCCCceeEEEEE--CCEEEEEecCCCCCCCCeEEEEeCCCCeEEEc-------CCCCCCCcce
Q 007704 479 WTKIAN----------MNRRRGCHSLAVL--NGKLYALGGFDGSAMVPSIEVYDPRLGSWMSG-------EPMKLSRGYL 539 (592)
Q Consensus 479 W~~i~~----------~p~~R~~~s~v~~--~~~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v-------~~lp~~R~~~ 539 (592)
|..+.. -...|.+|+|-.+ +.++|++||.....-++-.+.||.....=..+ +.+...+...
T Consensus 416 w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~El~L~f~y~I~~E~~~~~s~~~k~dsS~~pS~~f~ 495 (723)
T KOG2437|consen 416 WKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKTELNLFFSYDIDSEHVDIISDGTKKDSSMVPSTGFT 495 (723)
T ss_pred HHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccceEEeehhcceeccccchhhhccCcCccccCCCcchh
Confidence 987631 1256888888776 78899999976655455556665543322221 1222222222
Q ss_pred EEEEE---CCEEEEEecccCC-----CccccEEEEEcCC-CcEEEc
Q 007704 540 GAAVV---KEAIYVIGGVKNG-----SEIVDTVERFKEG-QGWEEI 576 (592)
Q Consensus 540 s~~v~---~~~Iyv~GG~~~~-----~~~~~~v~~Yd~~-~~W~~v 576 (592)
.-++. ...|.+.-|.... +...+.+|+|+.. ..|..+
T Consensus 496 qRs~~dp~~~~i~~~~G~~~~~~~~e~~~rns~wi~~i~~~~w~cI 541 (723)
T KOG2437|consen 496 QRATIDPELNEIHVLSGLSKDKEKREENVRNSFWIYDIVRNSWSCI 541 (723)
T ss_pred hhcccCCCCcchhhhcccchhccCccccccCcEEEEEecccchhhH
Confidence 22333 3567776665432 2367889999988 889876
No 32
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.35 E-value=4.3e-13 Score=140.39 Aligned_cols=177 Identities=16% Similarity=0.191 Sum_probs=139.2
Q ss_pred CCCCcceEEEEECC--EEEEEecCCCCcccceEEEEeCCCCeEEEcc---cccCcccceEEEEECC--EEEEEeccCCC-
Q 007704 392 NGTKGSLAGATIDN--KIFAIGGGNGLECFSDVEMLDLDIGKWIRTR---SMLQKRFALAAAELNG--VLYATGGYDGN- 463 (592)
Q Consensus 392 p~~r~~~~~~~~~~--~Iyv~GG~~~~~~~~~v~~yD~~t~~W~~i~---~~p~~R~~~~a~~~~g--~IYV~GG~~~~- 463 (592)
|..|++|.++...+ -||++||+++...+.|+|.|+...+.|+.+. ..|..|.+|.|+.... ++|+.|-+-+.
T Consensus 258 p~~RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCHRMVid~S~~KLYLlG~Y~~sS 337 (723)
T KOG2437|consen 258 PGMRGGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDTEGPGARSCHRMVIDISRRKLYLLGRYLDSS 337 (723)
T ss_pred ccccCcceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcceeEEeecCCCCCcchhhhhhhhhhhHhHHhhhhhccccc
Confidence 56799999998755 8999999999999999999999999999874 4788999999998755 99999987443
Q ss_pred -----CCCCeeEEEeCCCCeEEEec------cCCCCCceeEEEEECCE--EEEEecCCCC---CCCCeEEEEeCCCCeEE
Q 007704 464 -----EYMNSAERFDPREHYWTKIA------NMNRRRGCHSLAVLNGK--LYALGGFDGS---AMVPSIEVYDPRLGSWM 527 (592)
Q Consensus 464 -----~~~~~v~~yD~~t~~W~~i~------~~p~~R~~~s~v~~~~~--Lyv~GG~~~~---~~~~~v~~yD~~t~~W~ 527 (592)
..-.|+|+||..++.|.-+. .-|...+-|.|++..++ |||+||..-. ..+..++.||.....|.
T Consensus 338 ~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~ 417 (723)
T KOG2437|consen 338 VRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRILTCNEPQFSGLYAFNCQCQTWK 417 (723)
T ss_pred cccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCeeccCCCccccceEEEecCCccHH
Confidence 34578999999999999873 23667788999999766 9999997533 34677999999999998
Q ss_pred EcCC----------CCCCCcceEEEEE--CCEEEEEecccCCCccccEEEEEcC
Q 007704 528 SGEP----------MKLSRGYLGAAVV--KEAIYVIGGVKNGSEIVDTVERFKE 569 (592)
Q Consensus 528 ~v~~----------lp~~R~~~s~~v~--~~~Iyv~GG~~~~~~~~~~v~~Yd~ 569 (592)
.+.. .-..|.+|+|-.+ +..+|++||.... .-++-...||+
T Consensus 418 ~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~-~El~L~f~y~I 470 (723)
T KOG2437|consen 418 LLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSK-TELNLFFSYDI 470 (723)
T ss_pred HHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccc-eEEeehhccee
Confidence 8642 2234778887666 5679999996543 22333445543
No 33
>PF13964 Kelch_6: Kelch motif
Probab=99.13 E-value=1.1e-10 Score=87.82 Aligned_cols=49 Identities=33% Similarity=0.727 Sum_probs=46.6
Q ss_pred cCcceEEEEECCEEEEEeeCCC-CCCcceEEEEECCCCeEEECCCCCCCC
Q 007704 347 ARSYASAAMLNGELYIFGGGDG-NSWHNTVESYSPANDEWTSRPSLNGTK 395 (592)
Q Consensus 347 ~R~~~s~v~~~~~Iyv~GG~~~-~~~~~~v~~yd~~t~~W~~l~~lp~~r 395 (592)
||.+|++|+++++|||+||..+ ....+++++||+.+++|+.+++||.||
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCCC
Confidence 6899999999999999999887 788999999999999999999999987
No 34
>PF13964 Kelch_6: Kelch motif
Probab=99.09 E-value=2.4e-10 Score=86.02 Aligned_cols=49 Identities=22% Similarity=0.372 Sum_probs=45.9
Q ss_pred CCcceEEEEECCEEEEEecCCC-CcccceEEEEeCCCCeEEEcccccCcc
Q 007704 394 TKGSLAGATIDNKIFAIGGGNG-LECFSDVEMLDLDIGKWIRTRSMLQKR 442 (592)
Q Consensus 394 ~r~~~~~~~~~~~Iyv~GG~~~-~~~~~~v~~yD~~t~~W~~i~~~p~~R 442 (592)
||.+|++++++++|||+||... ....+++++||+.|++|+++++||.+|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCCC
Confidence 6899999999999999999877 678899999999999999999999987
No 35
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.84 E-value=4.2e-09 Score=77.90 Aligned_cols=46 Identities=35% Similarity=0.704 Sum_probs=42.8
Q ss_pred cCcceEEEEECCEEEEEeeCCC-CCCcceEEEEECCCCeEEECCCCC
Q 007704 347 ARSYASAAMLNGELYIFGGGDG-NSWHNTVESYSPANDEWTSRPSLN 392 (592)
Q Consensus 347 ~R~~~s~v~~~~~Iyv~GG~~~-~~~~~~v~~yd~~t~~W~~l~~lp 392 (592)
||.+|++++++++|||+||.++ ....+++++||+.+++|+.+++||
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 6899999999999999999887 889999999999999999998876
No 36
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.83 E-value=5.3e-09 Score=77.36 Aligned_cols=46 Identities=28% Similarity=0.484 Sum_probs=42.4
Q ss_pred CCcceEEEEECCEEEEEecCCC-CcccceEEEEeCCCCeEEEccccc
Q 007704 394 TKGSLAGATIDNKIFAIGGGNG-LECFSDVEMLDLDIGKWIRTRSML 439 (592)
Q Consensus 394 ~r~~~~~~~~~~~Iyv~GG~~~-~~~~~~v~~yD~~t~~W~~i~~~p 439 (592)
||+.|++++++++|||+||.+. ....+++++||+.+++|+.+++||
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 6899999999999999999877 778899999999999999999886
No 37
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.78 E-value=1.3e-08 Score=76.13 Aligned_cols=47 Identities=28% Similarity=0.513 Sum_probs=43.5
Q ss_pred CCEEEEEeeCC--CCCCcceEEEEECCCCeEEECCCCCCCCcceEEEEE
Q 007704 357 NGELYIFGGGD--GNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATI 403 (592)
Q Consensus 357 ~~~Iyv~GG~~--~~~~~~~v~~yd~~t~~W~~l~~lp~~r~~~~~~~~ 403 (592)
+++||||||.+ +...++++|+||+.+++|++++++|.+|.+|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCccceEEEEC
Confidence 57999999988 688899999999999999999999999999999863
No 38
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.76 E-value=1.5e-08 Score=75.79 Aligned_cols=47 Identities=34% Similarity=0.647 Sum_probs=43.3
Q ss_pred CCEEEEEeccC--CCCCCCeeEEEeCCCCeEEEeccCCCCCceeEEEEE
Q 007704 451 NGVLYATGGYD--GNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL 497 (592)
Q Consensus 451 ~g~IYV~GG~~--~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~~s~v~~ 497 (592)
+++||||||.+ ....++++++||+.+++|++++++|.+|.+|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCccceEEEEC
Confidence 57999999998 567899999999999999999999999999999864
No 39
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.70 E-value=1.6e-08 Score=75.62 Aligned_cols=47 Identities=30% Similarity=0.518 Sum_probs=31.6
Q ss_pred cCcceEEEEE-CCEEEEEeeCCCC-CCcceEEEEECCCCeEEECCCCCC
Q 007704 347 ARSYASAAML-NGELYIFGGGDGN-SWHNTVESYSPANDEWTSRPSLNG 393 (592)
Q Consensus 347 ~R~~~s~v~~-~~~Iyv~GG~~~~-~~~~~v~~yd~~t~~W~~l~~lp~ 393 (592)
||.+|+++.+ +++||||||.+.. ..++++|+||+.+++|++++++|.
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P~ 49 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMPS 49 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS--
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCCC
Confidence 6999999999 6999999998864 789999999999999999988773
No 40
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.68 E-value=5.2e-08 Score=72.94 Aligned_cols=46 Identities=33% Similarity=0.632 Sum_probs=42.2
Q ss_pred cCcceEEEEECCEEEEEeeC---CCCCCcceEEEEECCCCeEEECCCCC
Q 007704 347 ARSYASAAMLNGELYIFGGG---DGNSWHNTVESYSPANDEWTSRPSLN 392 (592)
Q Consensus 347 ~R~~~s~v~~~~~Iyv~GG~---~~~~~~~~v~~yd~~t~~W~~l~~lp 392 (592)
||.+|++++++++||||||. ......+++++||+.+++|+.+++++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 68999999999999999999 46788999999999999999998775
No 41
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.65 E-value=6.3e-08 Score=72.47 Aligned_cols=46 Identities=33% Similarity=0.663 Sum_probs=41.8
Q ss_pred cccceEEEEECCEEEEEecc---CCCCCCCeeEEEeCCCCeEEEeccCC
Q 007704 441 KRFALAAAELNGVLYATGGY---DGNEYMNSAERFDPREHYWTKIANMN 486 (592)
Q Consensus 441 ~R~~~~a~~~~g~IYV~GG~---~~~~~~~~v~~yD~~t~~W~~i~~~p 486 (592)
+|++|++++++++|||+||+ ......+++++||+++++|+.+++++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 68999999999999999999 45578899999999999999998765
No 42
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.62 E-value=4.3e-08 Score=73.26 Aligned_cols=47 Identities=26% Similarity=0.522 Sum_probs=31.6
Q ss_pred cccceEEEEE-CCEEEEEeccCCC-CCCCeeEEEeCCCCeEEEeccCCC
Q 007704 441 KRFALAAAEL-NGVLYATGGYDGN-EYMNSAERFDPREHYWTKIANMNR 487 (592)
Q Consensus 441 ~R~~~~a~~~-~g~IYV~GG~~~~-~~~~~v~~yD~~t~~W~~i~~~p~ 487 (592)
||.+|+++.+ +++|||+||.+.. ..++++++||+++++|++++++|.
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P~ 49 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMPS 49 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS--
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCCC
Confidence 6899999998 5899999999887 589999999999999999988773
No 43
>smart00612 Kelch Kelch domain.
Probab=98.56 E-value=1.1e-07 Score=69.72 Aligned_cols=47 Identities=32% Similarity=0.659 Sum_probs=42.8
Q ss_pred EEEEEeeCCCCCCcceEEEEECCCCeEEECCCCCCCCcceEEEEECC
Q 007704 359 ELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATIDN 405 (592)
Q Consensus 359 ~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~lp~~r~~~~~~~~~~ 405 (592)
+|||+||..+....+++++||+.+++|..+++|+.+|..|+++++++
T Consensus 1 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCCceeeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence 48999998876778999999999999999999999999999988764
No 44
>smart00612 Kelch Kelch domain.
Probab=98.55 E-value=1.1e-07 Score=69.57 Aligned_cols=47 Identities=34% Similarity=0.537 Sum_probs=42.6
Q ss_pred EEEEEecCCCCcccceEEEEeCCCCeEEEcccccCcccceEEEEECC
Q 007704 406 KIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNG 452 (592)
Q Consensus 406 ~Iyv~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~~~a~~~~g 452 (592)
+|||+||.......+++++||+.+++|+.+++|+.+|..++++++++
T Consensus 1 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCCceeeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence 58999998766678999999999999999999999999999988764
No 45
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.47 E-value=4.1e-06 Score=83.84 Aligned_cols=153 Identities=14% Similarity=0.183 Sum_probs=103.6
Q ss_pred cceEEEEeCCCCeEEEcccccCcccceEE-EEECCEEEEEeccCCCCCCCeeEEEeCCC----CeEEEec-cCCCCCcee
Q 007704 419 FSDVEMLDLDIGKWIRTRSMLQKRFALAA-AELNGVLYATGGYDGNEYMNSAERFDPRE----HYWTKIA-NMNRRRGCH 492 (592)
Q Consensus 419 ~~~v~~yD~~t~~W~~i~~~p~~R~~~~a-~~~~g~IYV~GG~~~~~~~~~v~~yD~~t----~~W~~i~-~~p~~R~~~ 492 (592)
......||+.|++++.+... ..-++.+. ..-+|++.++||... ....+-.|++.+ ..|.+.+ .|..+|...
T Consensus 45 ~a~s~~yD~~tn~~rpl~v~-td~FCSgg~~L~dG~ll~tGG~~~--G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYp 121 (243)
T PF07250_consen 45 PAHSVEYDPNTNTFRPLTVQ-TDTFCSGGAFLPDGRLLQTGGDND--GNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYP 121 (243)
T ss_pred eEEEEEEecCCCcEEeccCC-CCCcccCcCCCCCCCEEEeCCCCc--cccceEEEecCCCCCCCCceECcccccCCCccc
Confidence 34466899999999887533 22233333 334899999999754 345677888875 6798875 589999999
Q ss_pred EEEEE-CCEEEEEecCCCCCCCCeEEEEeCCC-----CeEEEcCC----CCCCCcceEEEEECCEEEEEecccCCCcccc
Q 007704 493 SLAVL-NGKLYALGGFDGSAMVPSIEVYDPRL-----GSWMSGEP----MKLSRGYLGAAVVKEAIYVIGGVKNGSEIVD 562 (592)
Q Consensus 493 s~v~~-~~~Lyv~GG~~~~~~~~~v~~yD~~t-----~~W~~v~~----lp~~R~~~s~~v~~~~Iyv~GG~~~~~~~~~ 562 (592)
+++.+ +|+++|+||... ...+.+.... ..|..+.. .+..-+-+....-+++||+++..
T Consensus 122 T~~~L~DG~vlIvGG~~~----~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~-------- 189 (243)
T PF07250_consen 122 TATTLPDGRVLIVGGSNN----PTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR-------- 189 (243)
T ss_pred cceECCCCCEEEEeCcCC----CcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC--------
Confidence 99999 999999999762 2233333321 12222221 22223334444558999999984
Q ss_pred EEEEEcCC-CcE-EEccccCCCCccc
Q 007704 563 TVERFKEG-QGW-EEINSRAIGKRCF 586 (592)
Q Consensus 563 ~v~~Yd~~-~~W-~~v~~~p~~~r~~ 586 (592)
.-.+||+. +++ ..+|.+|-+.|.+
T Consensus 190 ~s~i~d~~~n~v~~~lP~lPg~~R~Y 215 (243)
T PF07250_consen 190 GSIIYDYKTNTVVRTLPDLPGGPRNY 215 (243)
T ss_pred CcEEEeCCCCeEEeeCCCCCCCceec
Confidence 35688998 776 7899999988875
No 46
>PLN02772 guanylate kinase
Probab=98.42 E-value=1.4e-06 Score=92.37 Aligned_cols=83 Identities=13% Similarity=0.320 Sum_probs=70.3
Q ss_pred ccCcceEEEEECCEEEEEeeCCCCC-CcceEEEEECCCCeEEEC---CCCCCCCcceEEEEE-CCEEEEEecCCCCcccc
Q 007704 346 SARSYASAAMLNGELYIFGGGDGNS-WHNTVESYSPANDEWTSR---PSLNGTKGSLAGATI-DNKIFAIGGGNGLECFS 420 (592)
Q Consensus 346 ~~R~~~s~v~~~~~Iyv~GG~~~~~-~~~~v~~yd~~t~~W~~l---~~lp~~r~~~~~~~~-~~~Iyv~GG~~~~~~~~ 420 (592)
.++..++++.+++++||+||.++.. ..+.+++||..+++|... +..|.||-+|+++++ +++|+|++++.... .
T Consensus 23 ~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~~--~ 100 (398)
T PLN02772 23 KPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAPD--D 100 (398)
T ss_pred CCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCCc--c
Confidence 4788999999999999999987654 789999999999999764 678899999999999 68999999865443 6
Q ss_pred eEEEEeCCCC
Q 007704 421 DVEMLDLDIG 430 (592)
Q Consensus 421 ~v~~yD~~t~ 430 (592)
++|.+...|-
T Consensus 101 ~~w~l~~~t~ 110 (398)
T PLN02772 101 SIWFLEVDTP 110 (398)
T ss_pred ceEEEEcCCH
Confidence 7888877653
No 47
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.41 E-value=7.6e-05 Score=74.41 Aligned_cols=192 Identities=16% Similarity=0.111 Sum_probs=114.7
Q ss_pred ceEEEEECCCCeEEECCCCCCCCc---ce-EEEEEC-----CEEEEEecCCCCcccceEEEEeCCCCeEEEcccccCc-c
Q 007704 373 NTVESYSPANDEWTSRPSLNGTKG---SL-AGATID-----NKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQK-R 442 (592)
Q Consensus 373 ~~v~~yd~~t~~W~~l~~lp~~r~---~~-~~~~~~-----~~Iyv~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~-R 442 (592)
..+.++||.|++|..+|+.+.++. .+ .+.-++ -||..+...........+++|+..+++|+.+...+.. .
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~~~~~Wr~~~~~~~~~~ 93 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTLGSNSWRTIECSPPHHP 93 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEEeCCCCccccccCCCCcc
Confidence 468999999999999986554211 11 111111 2566554432222345789999999999988643221 1
Q ss_pred cceEEEEECCEEEEEeccCCCCCCCeeEEEeCCCCeEEE-eccCCCCC----ceeEEEEECCEEEEEecCCCCCCCCeEE
Q 007704 443 FALAAAELNGVLYATGGYDGNEYMNSAERFDPREHYWTK-IANMNRRR----GCHSLAVLNGKLYALGGFDGSAMVPSIE 517 (592)
Q Consensus 443 ~~~~a~~~~g~IYV~GG~~~~~~~~~v~~yD~~t~~W~~-i~~~p~~R----~~~s~v~~~~~Lyv~GG~~~~~~~~~v~ 517 (592)
.....+.++|.+|-+...........+..||+.+.+|.. ++ +|..+ ....++.++|+|.++...... ..-+||
T Consensus 94 ~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~-~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~-~~~~IW 171 (230)
T TIGR01640 94 LKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIP-LPCGNSDSVDYLSLINYKGKLAVLKQKKDT-NNFDLW 171 (230)
T ss_pred ccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeee-cCccccccccceEEEEECCEEEEEEecCCC-CcEEEE
Confidence 122267789999888754322111268999999999995 54 33322 234567779999887654321 124788
Q ss_pred EEe-CCCCeEEEcCCCC---CCCcc----eEEEEECCEEEEEecccCCCccccEEEEEcCC
Q 007704 518 VYD-PRLGSWMSGEPMK---LSRGY----LGAAVVKEAIYVIGGVKNGSEIVDTVERFKEG 570 (592)
Q Consensus 518 ~yD-~~t~~W~~v~~lp---~~R~~----~s~~v~~~~Iyv~GG~~~~~~~~~~v~~Yd~~ 570 (592)
+.+ .....|++.-.++ .+... ...+.-+++|++..+. .. ..-+..||++
T Consensus 172 vl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~-~~---~~~~~~y~~~ 228 (230)
T TIGR01640 172 VLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCED-EN---PFYIFYYNVG 228 (230)
T ss_pred EECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCC-CC---ceEEEEEecc
Confidence 886 4456798753222 11111 2234446788876653 11 1248888875
No 48
>PLN02772 guanylate kinase
Probab=98.36 E-value=2e-06 Score=91.24 Aligned_cols=84 Identities=12% Similarity=0.105 Sum_probs=71.4
Q ss_pred CcccceEEEEECCEEEEEeccCCCC-CCCeeEEEeCCCCeEEEe---ccCCCCCceeEEEEE-CCEEEEEecCCCCCCCC
Q 007704 440 QKRFALAAAELNGVLYATGGYDGNE-YMNSAERFDPREHYWTKI---ANMNRRRGCHSLAVL-NGKLYALGGFDGSAMVP 514 (592)
Q Consensus 440 ~~R~~~~a~~~~g~IYV~GG~~~~~-~~~~v~~yD~~t~~W~~i---~~~p~~R~~~s~v~~-~~~Lyv~GG~~~~~~~~ 514 (592)
.++.+++++.+++++||+||.++.. ..+.+++||+.+++|... +..|.+|.+|++|++ +++|+|+++.... -.
T Consensus 23 ~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~--~~ 100 (398)
T PLN02772 23 KPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAP--DD 100 (398)
T ss_pred CCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCC--cc
Confidence 4788999999999999999987764 678999999999999876 577899999999999 7999999875433 36
Q ss_pred eEEEEeCCCCe
Q 007704 515 SIEVYDPRLGS 525 (592)
Q Consensus 515 ~v~~yD~~t~~ 525 (592)
++|.+...|..
T Consensus 101 ~~w~l~~~t~~ 111 (398)
T PLN02772 101 SIWFLEVDTPF 111 (398)
T ss_pred ceEEEEcCCHH
Confidence 78888877754
No 49
>PF13854 Kelch_5: Kelch motif
Probab=98.31 E-value=1.2e-06 Score=63.34 Aligned_cols=39 Identities=31% Similarity=0.480 Sum_probs=35.6
Q ss_pred CCccCcceEEEEECCEEEEEeeCC--CCCCcceEEEEECCC
Q 007704 344 MSSARSYASAAMLNGELYIFGGGD--GNSWHNTVESYSPAN 382 (592)
Q Consensus 344 ~p~~R~~~s~v~~~~~Iyv~GG~~--~~~~~~~v~~yd~~t 382 (592)
.|.+|.+|++++++++|||+||.+ ....++++|+||+.+
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCC
Confidence 478999999999999999999988 478899999999876
No 50
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.29 E-value=4e-05 Score=76.79 Aligned_cols=149 Identities=15% Similarity=0.215 Sum_probs=98.3
Q ss_pred eEEEEECCCCeEEECCCCCCCCcceEEEEECCEEEEEecCCCCcccceEEEEeCCC----CeEEEcc-cccCcccceEEE
Q 007704 374 TVESYSPANDEWTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDI----GKWIRTR-SMLQKRFALAAA 448 (592)
Q Consensus 374 ~v~~yd~~t~~W~~l~~lp~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~v~~yD~~t----~~W~~i~-~~p~~R~~~~a~ 448 (592)
.-..||+.+++++.+......-++-.+..-+|++++.||... -...+-.|++.+ ..|.+.+ .|..+|...+++
T Consensus 47 ~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~--G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~ 124 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDND--GNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTAT 124 (243)
T ss_pred EEEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCc--cccceEEEecCCCCCCCCceECcccccCCCccccce
Confidence 345799999999988644333333333344899999999643 335677888865 6798875 588999888887
Q ss_pred EE-CCEEEEEeccCCCCCCCeeEEEeCCCC-----eEEEecc----CCCCCceeEEEEECCEEEEEecCCCCCCCCeEEE
Q 007704 449 EL-NGVLYATGGYDGNEYMNSAERFDPREH-----YWTKIAN----MNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEV 518 (592)
Q Consensus 449 ~~-~g~IYV~GG~~~~~~~~~v~~yD~~t~-----~W~~i~~----~p~~R~~~s~v~~~~~Lyv~GG~~~~~~~~~v~~ 518 (592)
.+ +|+++|+||... ...+.+..... .|..+.. .+...+-+..+.=+|+||+++.. .-.+
T Consensus 125 ~L~DG~vlIvGG~~~----~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~-------~s~i 193 (243)
T PF07250_consen 125 TLPDGRVLIVGGSNN----PTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR-------GSII 193 (243)
T ss_pred ECCCCCEEEEeCcCC----CcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC-------CcEE
Confidence 76 889999999773 33444444221 2222221 12222222333339999999874 4568
Q ss_pred EeCCCCeE-EEcCCCCCC
Q 007704 519 YDPRLGSW-MSGEPMKLS 535 (592)
Q Consensus 519 yD~~t~~W-~~v~~lp~~ 535 (592)
||+.++++ +.++.+|..
T Consensus 194 ~d~~~n~v~~~lP~lPg~ 211 (243)
T PF07250_consen 194 YDYKTNTVVRTLPDLPGG 211 (243)
T ss_pred EeCCCCeEEeeCCCCCCC
Confidence 99999987 778887764
No 51
>PF13854 Kelch_5: Kelch motif
Probab=98.17 E-value=3.4e-06 Score=60.96 Aligned_cols=39 Identities=28% Similarity=0.501 Sum_probs=35.5
Q ss_pred ccCcccceEEEEECCEEEEEeccCC--CCCCCeeEEEeCCC
Q 007704 438 MLQKRFALAAAELNGVLYATGGYDG--NEYMNSAERFDPRE 476 (592)
Q Consensus 438 ~p~~R~~~~a~~~~g~IYV~GG~~~--~~~~~~v~~yD~~t 476 (592)
+|.+|.+|++++++++|||+||.+. ...++++|+||+.+
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCC
Confidence 4789999999999999999999984 57899999999876
No 52
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.06 E-value=0.00045 Score=68.82 Aligned_cols=159 Identities=13% Similarity=0.098 Sum_probs=97.8
Q ss_pred ceEEEEeCCCCeEEEcccccCccc---c-eEEEEECC-----EEEEEeccCCCCCCCeeEEEeCCCCeEEEeccCCCC-C
Q 007704 420 SDVEMLDLDIGKWIRTRSMLQKRF---A-LAAAELNG-----VLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRR-R 489 (592)
Q Consensus 420 ~~v~~yD~~t~~W~~i~~~p~~R~---~-~~a~~~~g-----~IYV~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~-R 489 (592)
..+.++||.|++|..+|+.+.++. . ..+..++. ++..+...........+++|+..++.|+.+...+.. .
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~~~~~Wr~~~~~~~~~~ 93 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTLGSNSWRTIECSPPHHP 93 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEEeCCCCccccccCCCCcc
Confidence 578999999999999976543211 1 11112221 444444322222345789999999999998743321 1
Q ss_pred ceeEEEEECCEEEEEecCCCCCCCCeEEEEeCCCCeEEEcCCCCCCCc----ceEEEEECCEEEEEecccCCCccccEEE
Q 007704 490 GCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRG----YLGAAVVKEAIYVIGGVKNGSEIVDTVE 565 (592)
Q Consensus 490 ~~~s~v~~~~~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~lp~~R~----~~s~~v~~~~Iyv~GG~~~~~~~~~~v~ 565 (592)
.....+.++|.||-+...........|..||..+.+|...-++|..+. ...++.++|++.++....... .-+||
T Consensus 94 ~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~--~~~IW 171 (230)
T TIGR01640 94 LKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLINYKGKLAVLKQKKDTN--NFDLW 171 (230)
T ss_pred ccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCccccccccceEEEEECCEEEEEEecCCCC--cEEEE
Confidence 122266779999988754322111269999999999996223443332 345677889988877653321 14688
Q ss_pred EEcCC--CcEEEccccC
Q 007704 566 RFKEG--QGWEEINSRA 580 (592)
Q Consensus 566 ~Yd~~--~~W~~v~~~p 580 (592)
+.+.. ..|+.+-..+
T Consensus 172 vl~d~~~~~W~k~~~i~ 188 (230)
T TIGR01640 172 VLNDAGKQEWSKLFTVP 188 (230)
T ss_pred EECCCCCCceeEEEEEc
Confidence 88733 6798864443
No 53
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=97.73 E-value=0.00075 Score=67.66 Aligned_cols=152 Identities=17% Similarity=0.161 Sum_probs=95.5
Q ss_pred EEEEecCCC-CcccceEEEEeCCCCe----EE-------EcccccCcccceEEEEE----CCEEEEEeccCCC-------
Q 007704 407 IFAIGGGNG-LECFSDVEMLDLDIGK----WI-------RTRSMLQKRFALAAAEL----NGVLYATGGYDGN------- 463 (592)
Q Consensus 407 Iyv~GG~~~-~~~~~~v~~yD~~t~~----W~-------~i~~~p~~R~~~~a~~~----~g~IYV~GG~~~~------- 463 (592)
.+|.||.+. ++..+.+|+....+.. -+ .+.++|.+|++|++-++ +....+|||....
T Consensus 41 YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRTT 120 (337)
T PF03089_consen 41 YLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRTT 120 (337)
T ss_pred EEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccccch
Confidence 456677654 4566788887665433 11 23689999999999876 2347889996421
Q ss_pred -------CCCCeeEEEeCCCCeEEE--eccCCCCCceeEEEEECCEEEEEecCCCC--CCCCeEEEEeCCC--C-eEEEc
Q 007704 464 -------EYMNSAERFDPREHYWTK--IANMNRRRGCHSLAVLNGKLYALGGFDGS--AMVPSIEVYDPRL--G-SWMSG 529 (592)
Q Consensus 464 -------~~~~~v~~yD~~t~~W~~--i~~~p~~R~~~s~v~~~~~Lyv~GG~~~~--~~~~~v~~yD~~t--~-~W~~v 529 (592)
.....++..|++-+-.+. ++.+..+.+.|.+.+-++.+|++||+.-. .....+++...+. + -+...
T Consensus 121 enWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvslar~D~VYilGGHsl~sd~Rpp~l~rlkVdLllGSP~vsC 200 (337)
T PF03089_consen 121 ENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVSLARNDCVYILGGHSLESDSRPPRLYRLKVDLLLGSPAVSC 200 (337)
T ss_pred hhcceeccCCCeEEEEeccccccccccchhhcCCeEEEEEEecCceEEEEccEEccCCCCCCcEEEEEEeecCCCceeEE
Confidence 234568888888877654 57777889999999999999999997533 2223344433221 1 01111
Q ss_pred CCCCCCCcceEEEEE---CCEEEEEecccCCC
Q 007704 530 EPMKLSRGYLGAAVV---KEAIYVIGGVKNGS 558 (592)
Q Consensus 530 ~~lp~~R~~~s~~v~---~~~Iyv~GG~~~~~ 558 (592)
.-++......++++. .+..+|+||+..+.
T Consensus 201 ~vl~~glSisSAIvt~~~~~e~iIlGGY~sds 232 (337)
T PF03089_consen 201 TVLQGGLSISSAIVTQTGPHEYIILGGYQSDS 232 (337)
T ss_pred EECCCCceEeeeeEeecCCCceEEEecccccc
Confidence 123334444444433 36678889997664
No 54
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=97.54 E-value=0.01 Score=59.66 Aligned_cols=190 Identities=16% Similarity=0.173 Sum_probs=106.6
Q ss_pred EEEEEeeCCC-CCCcceEEEEECCCCe----E-------EECCCCCCCCcceEEEEE--CC--EEEEEecCCC-------
Q 007704 359 ELYIFGGGDG-NSWHNTVESYSPANDE----W-------TSRPSLNGTKGSLAGATI--DN--KIFAIGGGNG------- 415 (592)
Q Consensus 359 ~Iyv~GG~~~-~~~~~~v~~yd~~t~~----W-------~~l~~lp~~r~~~~~~~~--~~--~Iyv~GG~~~------- 415 (592)
..++.||.+. +...+.+|.....+.. - ..++..|.+|++|++-++ .| -+++|||...
T Consensus 40 ~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRT 119 (337)
T PF03089_consen 40 QYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRT 119 (337)
T ss_pred eEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccccc
Confidence 3556677664 4455667776544332 1 123778999999998776 33 3788999521
Q ss_pred -------CcccceEEEEeCCCCeEE--EcccccCcccceEEEEECCEEEEEeccCCCC--CCCeeEEEe--CCCC-eEEE
Q 007704 416 -------LECFSDVEMLDLDIGKWI--RTRSMLQKRFALAAAELNGVLYATGGYDGNE--YMNSAERFD--PREH-YWTK 481 (592)
Q Consensus 416 -------~~~~~~v~~yD~~t~~W~--~i~~~p~~R~~~~a~~~~g~IYV~GG~~~~~--~~~~v~~yD--~~t~-~W~~ 481 (592)
-.+...|+..|++-+-.+ .++.+....+-|.+..-++.+|++||..-.. ....+++.- +-.+ -+-.
T Consensus 120 TenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvslar~D~VYilGGHsl~sd~Rpp~l~rlkVdLllGSP~vs 199 (337)
T PF03089_consen 120 TENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVSLARNDCVYILGGHSLESDSRPPRLYRLKVDLLLGSPAVS 199 (337)
T ss_pred hhhcceeccCCCeEEEEeccccccccccchhhcCCeEEEEEEecCceEEEEccEEccCCCCCCcEEEEEEeecCCCceeE
Confidence 125567888888766554 3566677788888888999999999965332 123333332 1111 1222
Q ss_pred eccCCCCCceeEEEEE---CCEEEEEecCCCC---CCCCeEEEEeCC--------CCeEEEcCCCCCCCcceEEEEECCE
Q 007704 482 IANMNRRRGCHSLAVL---NGKLYALGGFDGS---AMVPSIEVYDPR--------LGSWMSGEPMKLSRGYLGAAVVKEA 547 (592)
Q Consensus 482 i~~~p~~R~~~s~v~~---~~~Lyv~GG~~~~---~~~~~v~~yD~~--------t~~W~~v~~lp~~R~~~s~~v~~~~ 547 (592)
..-++.+.+..++.+. .+..+|+|||... .+......+|-. +-.|+ ++..+.|.++....-++.
T Consensus 200 C~vl~~glSisSAIvt~~~~~e~iIlGGY~sdsQKRm~C~~V~Ldd~~I~ie~~E~P~Wt--~dI~hSrtWFGgs~G~G~ 277 (337)
T PF03089_consen 200 CTVLQGGLSISSAIVTQTGPHEYIILGGYQSDSQKRMECNTVSLDDDGIHIEEREPPEWT--GDIKHSRTWFGGSMGKGS 277 (337)
T ss_pred EEECCCCceEeeeeEeecCCCceEEEecccccceeeeeeeEEEEeCCceEeccCCCCCCC--CCcCcCccccccccCCce
Confidence 2223334433333332 4678889998543 222222333332 33343 233455666655554555
Q ss_pred EEE
Q 007704 548 IYV 550 (592)
Q Consensus 548 Iyv 550 (592)
+++
T Consensus 278 ~Li 280 (337)
T PF03089_consen 278 ALI 280 (337)
T ss_pred EEE
Confidence 443
No 55
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.26 E-value=0.17 Score=49.86 Aligned_cols=183 Identities=17% Similarity=0.241 Sum_probs=110.6
Q ss_pred EEECCEEEEEeeCCCCCCcceEEEEECCCCe--EEECCCCCCCCcceEEEEECCEEEEEecCCCCcccceEEEEeCCCC-
Q 007704 354 AMLNGELYIFGGGDGNSWHNTVESYSPANDE--WTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIG- 430 (592)
Q Consensus 354 v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~--W~~l~~lp~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~v~~yD~~t~- 430 (592)
+..++.+|+..+ ...++++|..+++ |+.- ++.+-... .+..++.||+..+ .+.++.+|..++
T Consensus 33 ~~~~~~v~~~~~------~~~l~~~d~~tG~~~W~~~--~~~~~~~~-~~~~~~~v~v~~~------~~~l~~~d~~tG~ 97 (238)
T PF13360_consen 33 VPDGGRVYVASG------DGNLYALDAKTGKVLWRFD--LPGPISGA-PVVDGGRVYVGTS------DGSLYALDAKTGK 97 (238)
T ss_dssp EEETTEEEEEET------TSEEEEEETTTSEEEEEEE--CSSCGGSG-EEEETTEEEEEET------TSEEEEEETTTSC
T ss_pred EEeCCEEEEEcC------CCEEEEEECCCCCEEEEee--ccccccce-eeecccccccccc------eeeeEecccCCcc
Confidence 346888998843 3579999998875 6543 23322222 4777899988863 137899998776
Q ss_pred -eEE-EcccccC--cccceEEEEECCEEEEEeccCCCCCCCeeEEEeCCCCe--EEEeccCCCCC--------ceeEEEE
Q 007704 431 -KWI-RTRSMLQ--KRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHY--WTKIANMNRRR--------GCHSLAV 496 (592)
Q Consensus 431 -~W~-~i~~~p~--~R~~~~a~~~~g~IYV~GG~~~~~~~~~v~~yD~~t~~--W~~i~~~p~~R--------~~~s~v~ 496 (592)
.|+ .....+. .+......+.++.+|+... ...+..+|++++. |+.-...+... .....+.
T Consensus 98 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (238)
T PF13360_consen 98 VLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS------SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVI 171 (238)
T ss_dssp EEEEEEE-SSCTCSTB--SEEEEETTEEEEEET------CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEEC
T ss_pred eeeeeccccccccccccccCceEecCEEEEEec------cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEE
Confidence 487 3433222 2334445555778877653 2578999999876 87654443321 1233344
Q ss_pred ECCEEEEEecCCCCCCCCeEEEEeCCCCe--EEEcCCCCCCCcceEEEEECCEEEEEecccCCCccccEEEEEcCC---C
Q 007704 497 LNGKLYALGGFDGSAMVPSIEVYDPRLGS--WMSGEPMKLSRGYLGAAVVKEAIYVIGGVKNGSEIVDTVERFKEG---Q 571 (592)
Q Consensus 497 ~~~~Lyv~GG~~~~~~~~~v~~yD~~t~~--W~~v~~lp~~R~~~s~~v~~~~Iyv~GG~~~~~~~~~~v~~Yd~~---~ 571 (592)
.++.+|+..+.. .+..+|..++. |+.. +.. ........++.+|+.. .+ ..|.++|+. .
T Consensus 172 ~~~~v~~~~~~g------~~~~~d~~tg~~~w~~~--~~~--~~~~~~~~~~~l~~~~-~~------~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 172 SDGRVYVSSGDG------RVVAVDLATGEKLWSKP--ISG--IYSLPSVDGGTLYVTS-SD------GRLYALDLKTGKV 234 (238)
T ss_dssp CTTEEEEECCTS------SEEEEETTTTEEEEEEC--SS---ECECEECCCTEEEEEE-TT------TEEEEEETTTTEE
T ss_pred ECCEEEEEcCCC------eEEEEECCCCCEEEEec--CCC--ccCCceeeCCEEEEEe-CC------CEEEEEECCCCCE
Confidence 468888886643 15666999986 8433 111 1122444567777766 32 569999987 4
Q ss_pred cEE
Q 007704 572 GWE 574 (592)
Q Consensus 572 ~W~ 574 (592)
.|+
T Consensus 235 ~W~ 237 (238)
T PF13360_consen 235 VWQ 237 (238)
T ss_dssp EEE
T ss_pred EeE
Confidence 575
No 56
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=97.15 E-value=0.018 Score=61.10 Aligned_cols=119 Identities=15% Similarity=0.154 Sum_probs=83.6
Q ss_pred ECCEEEEEecCCCCcccceEEEEeCCCCeEEEcccccCcccceEEEEECCEEEEEeccCCCCCCC-----eeEEE--e--
Q 007704 403 IDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNGVLYATGGYDGNEYMN-----SAERF--D-- 473 (592)
Q Consensus 403 ~~~~Iyv~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~~~a~~~~g~IYV~GG~~~~~~~~-----~v~~y--D-- 473 (592)
.+++|+.++.. ..+.+||..|..-...|.++.+.....++.++++||++.......... ..+++ +
T Consensus 75 ~gskIv~~d~~------~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~ 148 (342)
T PF07893_consen 75 HGSKIVAVDQS------GRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPP 148 (342)
T ss_pred cCCeEEEEcCC------CCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEeccccc
Confidence 48899999653 348899999998888888888888888888899999998864432111 44444 4
Q ss_pred ------CCCCeEEEeccCCCCCc-------eeEEEEE-CCEEEE-EecCCCCCCCCeEEEEeCCCCeEEEcCCC
Q 007704 474 ------PREHYWTKIANMNRRRG-------CHSLAVL-NGKLYA-LGGFDGSAMVPSIEVYDPRLGSWMSGEPM 532 (592)
Q Consensus 474 ------~~t~~W~~i~~~p~~R~-------~~s~v~~-~~~Lyv-~GG~~~~~~~~~v~~yD~~t~~W~~v~~l 532 (592)
.....|+.+++.|..+. -.+-+++ +..|+| .-|.. ...+.||+.+.+|+.++..
T Consensus 149 ~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~-----~GTysfDt~~~~W~~~GdW 217 (342)
T PF07893_consen 149 PDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR-----WGTYSFDTESHEWRKHGDW 217 (342)
T ss_pred cccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCCc-----eEEEEEEcCCcceeeccce
Confidence 22346888877663322 2344455 677888 43321 3489999999999999853
No 57
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=97.10 E-value=0.022 Score=60.46 Aligned_cols=122 Identities=15% Similarity=0.168 Sum_probs=83.5
Q ss_pred ECCEEEEEeeCCCCCCcceEEEEECCCCeEEECCCCCCCCcceEEEEECCEEEEEecCCCCccc-----ceEEEE--e--
Q 007704 356 LNGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECF-----SDVEML--D-- 426 (592)
Q Consensus 356 ~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~lp~~r~~~~~~~~~~~Iyv~GG~~~~~~~-----~~v~~y--D-- 426 (592)
.+.+|+.++.. ..+.+||..+..-..+|.++.+...-.++.++++||++......... ..++.+ +
T Consensus 75 ~gskIv~~d~~------~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~ 148 (342)
T PF07893_consen 75 HGSKIVAVDQS------GRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPP 148 (342)
T ss_pred cCCeEEEEcCC------CCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEeccccc
Confidence 48899998664 33889999999999999998888777888889999999875332211 144444 4
Q ss_pred ------CCCCeEEEcccccCccc-------ceEEEEE-CCEEEE-EeccCCCCCCCeeEEEeCCCCeEEEeccCCCC
Q 007704 427 ------LDIGKWIRTRSMLQKRF-------ALAAAEL-NGVLYA-TGGYDGNEYMNSAERFDPREHYWTKIANMNRR 488 (592)
Q Consensus 427 ------~~t~~W~~i~~~p~~R~-------~~~a~~~-~g~IYV-~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~ 488 (592)
...-.|+.+|+.|..+. -.+-+++ +.+|+| +-|.. ...+.||..+.+|++.+...-|
T Consensus 149 ~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~-----~GTysfDt~~~~W~~~GdW~LP 220 (342)
T PF07893_consen 149 PDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR-----WGTYSFDTESHEWRKHGDWMLP 220 (342)
T ss_pred cccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCCc-----eEEEEEEcCCcceeeccceecC
Confidence 22336778876554332 2233445 667888 43321 3479999999999999765433
No 58
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.99 E-value=0.15 Score=55.08 Aligned_cols=190 Identities=13% Similarity=0.159 Sum_probs=108.0
Q ss_pred EEEEECCEEEEEeeCCCCCCcceEEEEECCCC--eEEEC-CCC----C---CCCcceEEEEECCEEEEEecCCCCcccce
Q 007704 352 SAAMLNGELYIFGGGDGNSWHNTVESYSPAND--EWTSR-PSL----N---GTKGSLAGATIDNKIFAIGGGNGLECFSD 421 (592)
Q Consensus 352 s~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~--~W~~l-~~l----p---~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~ 421 (592)
+.++.+++||+.+.. ..+++||..++ .|+.- +.- . .++.....++.+++||+.+. ...
T Consensus 64 sPvv~~~~vy~~~~~------g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~------~g~ 131 (394)
T PRK11138 64 HPAVAYNKVYAADRA------GLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE------KGQ 131 (394)
T ss_pred ccEEECCEEEEECCC------CeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcC------CCE
Confidence 456679999997652 36899998866 58653 210 0 11222335566888887532 246
Q ss_pred EEEEeCCCC--eEEEcccccCcccceEEEEECCEEEEEeccCCCCCCCeeEEEeCCCCe--EEEeccCCC--CCceeEEE
Q 007704 422 VEMLDLDIG--KWIRTRSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHY--WTKIANMNR--RRGCHSLA 495 (592)
Q Consensus 422 v~~yD~~t~--~W~~i~~~p~~R~~~~a~~~~g~IYV~GG~~~~~~~~~v~~yD~~t~~--W~~i~~~p~--~R~~~s~v 495 (592)
++.+|..|+ .|+.-.+ .+ ...+-++.++.+|+..+ ...++.+|+++++ |+.-...+. .+...+-+
T Consensus 132 l~ald~~tG~~~W~~~~~--~~-~~ssP~v~~~~v~v~~~------~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~ 202 (394)
T PRK11138 132 VYALNAEDGEVAWQTKVA--GE-ALSRPVVSDGLVLVHTS------NGMLQALNESDGAVKWTVNLDVPSLTLRGESAPA 202 (394)
T ss_pred EEEEECCCCCCcccccCC--Cc-eecCCEEECCEEEEECC------CCEEEEEEccCCCEeeeecCCCCcccccCCCCCE
Confidence 889999876 4865321 11 11223456888887543 1368999998876 887543321 12222334
Q ss_pred EECCEEEEEecCCCCCCCCeEEEEeCCCC--eEEEcCCCCCC--------CcceEEEEECCEEEEEecccCCCccccEEE
Q 007704 496 VLNGKLYALGGFDGSAMVPSIEVYDPRLG--SWMSGEPMKLS--------RGYLGAAVVKEAIYVIGGVKNGSEIVDTVE 565 (592)
Q Consensus 496 ~~~~~Lyv~GG~~~~~~~~~v~~yD~~t~--~W~~v~~lp~~--------R~~~s~~v~~~~Iyv~GG~~~~~~~~~~v~ 565 (592)
+.++.+|+..+ + ..+..+|+.+. .|+.--..|.. ....+.++.++.+|+.+. + ..++
T Consensus 203 v~~~~v~~~~~-~-----g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~-~------g~l~ 269 (394)
T PRK11138 203 TAFGGAIVGGD-N-----GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAY-N------GNLV 269 (394)
T ss_pred EECCEEEEEcC-C-----CEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEc-C------CeEE
Confidence 45777766433 2 35788888775 48652211111 111234456788887553 1 2467
Q ss_pred EEcCC---CcEEE
Q 007704 566 RFKEG---QGWEE 575 (592)
Q Consensus 566 ~Yd~~---~~W~~ 575 (592)
++|+. ..|+.
T Consensus 270 ald~~tG~~~W~~ 282 (394)
T PRK11138 270 ALDLRSGQIVWKR 282 (394)
T ss_pred EEECCCCCEEEee
Confidence 77765 34654
No 59
>PRK00809 hypothetical protein; Provisional
Probab=96.49 E-value=0.013 Score=54.11 Aligned_cols=97 Identities=19% Similarity=0.285 Sum_probs=74.4
Q ss_pred EEeecCCChHHHhhhccccCCccCccchhccCCCCeEEEEecC-------CCeEeeEEEeccCCCccccCCCCC---CCC
Q 007704 22 IFGCKKSTIKECLAKQLFGLPAQHFLYVRKVDPGLPLFLFNYT-------DRKLHGIFEAASPGMMNINPYGWT---DGS 91 (592)
Q Consensus 22 if~c~~~t~~e~~~~~~fgl~~~~~~~v~~i~~g~~lfl~~~~-------~~~l~g~~~a~s~g~~~~~~~a~~---~~~ 91 (592)
|++-|.+....|..+.++|++.++..+++.++||..||-|--. .....||.|-+++. ..||.+|- ...
T Consensus 5 i~~~~~~~~~~~~~~gv~g~~~~~rn~lr~Mk~GD~v~fYhs~~~~~~~~~~~ivgi~eV~~~~--y~D~t~~~p~~~~~ 82 (144)
T PRK00809 5 LCITNEDNWEVIKDKNVWGVPERYKNTIEKVKPGDKLIIYVSQEYGAERLPGKIVGIYEVVSEW--YEDSTPIFPAEPVR 82 (144)
T ss_pred EEecCHHHHHHHHhCCEeecchhhhhHHhhCCCCCEEEEEECCccCCCCCCceEEEEEEEecCc--ccCCccCCCccccC
Confidence 5555778888999999999999999999999999999999887 58899999999876 44666653 122
Q ss_pred CCCCCCceEEEEEeeeec-CCCCCcchhHH
Q 007704 92 ERTSYPAQVQIRVRMQCQ-PLNEEKFKPII 120 (592)
Q Consensus 92 ~~~~~paqv~~~~~~~~~-pl~e~~~~~~i 120 (592)
...+||..|+++...... |++=.++.+.+
T Consensus 83 ~~~~~p~rvdV~~~~~~~~~v~l~~L~~~L 112 (144)
T PRK00809 83 PKEIYPYRVKLKPVKIFEEPIDFKPLIPKL 112 (144)
T ss_pred CCCCceEEEEEEEeeecCCcccHHHHHhhh
Confidence 347899999998764322 35555554444
No 60
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.47 E-value=0.5 Score=50.97 Aligned_cols=187 Identities=17% Similarity=0.229 Sum_probs=109.7
Q ss_pred ceEEEEECCEEEEEeeCCCCCCcceEEEEECCCC--eEEECCCCCCCCcceEEEEECCEEEEEecCCCCcccceEEEEeC
Q 007704 350 YASAAMLNGELYIFGGGDGNSWHNTVESYSPAND--EWTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDL 427 (592)
Q Consensus 350 ~~s~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~--~W~~l~~lp~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~v~~yD~ 427 (592)
..+.++.+++||+.+. + ..++++|..++ .|+.-. +.+. ..+-++.++.+|+..+ ...++.+|+
T Consensus 113 ~~~~~v~~~~v~v~~~-~-----g~l~ald~~tG~~~W~~~~--~~~~-~ssP~v~~~~v~v~~~------~g~l~ald~ 177 (394)
T PRK11138 113 SGGVTVAGGKVYIGSE-K-----GQVYALNAEDGEVAWQTKV--AGEA-LSRPVVSDGLVLVHTS------NGMLQALNE 177 (394)
T ss_pred ccccEEECCEEEEEcC-C-----CEEEEEECCCCCCcccccC--CCce-ecCCEEECCEEEEECC------CCEEEEEEc
Confidence 3445667889987432 2 36899999876 586532 2111 1223445788887543 246899999
Q ss_pred CCCe--EEEcccccC--cccceEEEEECCEEEEEeccCCCCCCCeeEEEeCCCCe--EEEeccCCCC--------CceeE
Q 007704 428 DIGK--WIRTRSMLQ--KRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHY--WTKIANMNRR--------RGCHS 493 (592)
Q Consensus 428 ~t~~--W~~i~~~p~--~R~~~~a~~~~g~IYV~GG~~~~~~~~~v~~yD~~t~~--W~~i~~~p~~--------R~~~s 493 (592)
.+++ |+.-...+. .+...+-++.++.+|+..+ + ..++.+|+.++. |+.-...+.. ....+
T Consensus 178 ~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~-~-----g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~s 251 (394)
T PRK11138 178 SDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGD-N-----GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTT 251 (394)
T ss_pred cCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcC-C-----CEEEEEEccCChhhheeccccCCCccchhcccccCCC
Confidence 8876 765433221 1222233455777777443 2 357888888764 8753222211 11233
Q ss_pred EEEECCEEEEEecCCCCCCCCeEEEEeCCCC--eEEEcCCCCCCCcceEEEEECCEEEEEecccCCCccccEEEEEcCC-
Q 007704 494 LAVLNGKLYALGGFDGSAMVPSIEVYDPRLG--SWMSGEPMKLSRGYLGAAVVKEAIYVIGGVKNGSEIVDTVERFKEG- 570 (592)
Q Consensus 494 ~v~~~~~Lyv~GG~~~~~~~~~v~~yD~~t~--~W~~v~~lp~~R~~~s~~v~~~~Iyv~GG~~~~~~~~~~v~~Yd~~- 570 (592)
-++.++.+|+.+. + ..++.+|+.+. .|+.- .... ...++.++.||+.... ..++++|++
T Consensus 252 P~v~~~~vy~~~~-~-----g~l~ald~~tG~~~W~~~--~~~~---~~~~~~~~~vy~~~~~-------g~l~ald~~t 313 (394)
T PRK11138 252 PVVVGGVVYALAY-N-----GNLVALDLRSGQIVWKRE--YGSV---NDFAVDGGRIYLVDQN-------DRVYALDTRG 313 (394)
T ss_pred cEEECCEEEEEEc-C-----CeEEEEECCCCCEEEeec--CCCc---cCcEEECCEEEEEcCC-------CeEEEEECCC
Confidence 4556898888653 2 36889999876 48762 1111 2345678899986532 458888876
Q ss_pred --CcEEE
Q 007704 571 --QGWEE 575 (592)
Q Consensus 571 --~~W~~ 575 (592)
..|+.
T Consensus 314 G~~~W~~ 320 (394)
T PRK11138 314 GVELWSQ 320 (394)
T ss_pred CcEEEcc
Confidence 45854
No 61
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=96.47 E-value=0.74 Score=46.01 Aligned_cols=200 Identities=19% Similarity=0.157 Sum_probs=110.4
Q ss_pred CCEEEEEeeCCCCCCcceEEEEECCCCeEEECCCCCCCCcceEEEEE--CCEEEEEecCCCCcccceEEEEeCCCCeEEE
Q 007704 357 NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATI--DNKIFAIGGGNGLECFSDVEMLDLDIGKWIR 434 (592)
Q Consensus 357 ~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~lp~~r~~~~~~~~--~~~Iyv~GG~~~~~~~~~v~~yD~~t~~W~~ 434 (592)
++.+|+.-- .-..++.+|+.++.-....... ..+++.. ++++|+... ....++|+.+++++.
T Consensus 11 ~g~l~~~D~-----~~~~i~~~~~~~~~~~~~~~~~----~~G~~~~~~~g~l~v~~~-------~~~~~~d~~~g~~~~ 74 (246)
T PF08450_consen 11 DGRLYWVDI-----PGGRIYRVDPDTGEVEVIDLPG----PNGMAFDRPDGRLYVADS-------GGIAVVDPDTGKVTV 74 (246)
T ss_dssp TTEEEEEET-----TTTEEEEEETTTTEEEEEESSS----EEEEEEECTTSEEEEEET-------TCEEEEETTTTEEEE
T ss_pred CCEEEEEEc-----CCCEEEEEECCCCeEEEEecCC----CceEEEEccCCEEEEEEc-------CceEEEecCCCcEEE
Confidence 577777733 2367999999998776542222 2344444 688888864 344677999999988
Q ss_pred ccccc-----CcccceEEEEECCEEEEEeccCCC-CCC--CeeEEEeCCCCeEEEec-cCCCCCceeEEEEE-C-CEEEE
Q 007704 435 TRSML-----QKRFALAAAELNGVLYATGGYDGN-EYM--NSAERFDPREHYWTKIA-NMNRRRGCHSLAVL-N-GKLYA 503 (592)
Q Consensus 435 i~~~p-----~~R~~~~a~~~~g~IYV~GG~~~~-~~~--~~v~~yD~~t~~W~~i~-~~p~~R~~~s~v~~-~-~~Lyv 503 (592)
+...+ ..+..-.++--+|.||+..-.... ... ..++++++. ++...+. .+..+ ..++.- + ..||+
T Consensus 75 ~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~p---NGi~~s~dg~~lyv 150 (246)
T PF08450_consen 75 LADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFP---NGIAFSPDGKTLYV 150 (246)
T ss_dssp EEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSE---EEEEEETTSSEEEE
T ss_pred EeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccc---cceEECCcchheee
Confidence 76553 222333333347888886432211 111 569999999 6665553 22222 234444 3 45777
Q ss_pred EecCCCCCCCCeEEEEeCCCCe--EEE---cCCCCCCCc-ceEEEEE-CCEEEEEecccCCCccccEEEEEcCC-CcEEE
Q 007704 504 LGGFDGSAMVPSIEVYDPRLGS--WMS---GEPMKLSRG-YLGAAVV-KEAIYVIGGVKNGSEIVDTVERFKEG-QGWEE 575 (592)
Q Consensus 504 ~GG~~~~~~~~~v~~yD~~t~~--W~~---v~~lp~~R~-~~s~~v~-~~~Iyv~GG~~~~~~~~~~v~~Yd~~-~~W~~ 575 (592)
.-- ....+++|++.... +.. +..++.... .-.+++- ++.|||..-.. ..|++||++ ..-..
T Consensus 151 ~ds-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~------~~I~~~~p~G~~~~~ 219 (246)
T PF08450_consen 151 ADS-----FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGG------GRIVVFDPDGKLLRE 219 (246)
T ss_dssp EET-----TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETT------TEEEEEETTSCEEEE
T ss_pred ccc-----ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCC------CEEEEECCCccEEEE
Confidence 533 34569999986432 332 222333222 2233333 68899863321 569999999 54444
Q ss_pred ccccCCCCccceEE
Q 007704 576 INSRAIGKRCFMSV 589 (592)
Q Consensus 576 v~~~p~~~r~~~sa 589 (592)
+. +|.. +..++|
T Consensus 220 i~-~p~~-~~t~~~ 231 (246)
T PF08450_consen 220 IE-LPVP-RPTNCA 231 (246)
T ss_dssp EE--SSS-SEEEEE
T ss_pred Ec-CCCC-CEEEEE
Confidence 43 3422 444443
No 62
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=95.99 E-value=0.98 Score=45.40 Aligned_cols=142 Identities=18% Similarity=0.137 Sum_probs=72.9
Q ss_pred EEEEEeeCCCCCCcceEEEEECCCCeEEECCCC-CCCCcceEEEEECC-EEEEEecCCCCcccceEEEEeCCCCeEEE-c
Q 007704 359 ELYIFGGGDGNSWHNTVESYSPANDEWTSRPSL-NGTKGSLAGATIDN-KIFAIGGGNGLECFSDVEMLDLDIGKWIR-T 435 (592)
Q Consensus 359 ~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~l-p~~r~~~~~~~~~~-~Iyv~GG~~~~~~~~~v~~yD~~t~~W~~-i 435 (592)
.+|+.++.+ +.+..||+.+++-...-.. ..++ .....-++ .+|+.++. ...+.+||..+++... +
T Consensus 2 ~~~~s~~~d-----~~v~~~d~~t~~~~~~~~~~~~~~--~l~~~~dg~~l~~~~~~-----~~~v~~~d~~~~~~~~~~ 69 (300)
T TIGR03866 2 KAYVSNEKD-----NTISVIDTATLEVTRTFPVGQRPR--GITLSKDGKLLYVCASD-----SDTIQVIDLATGEVIGTL 69 (300)
T ss_pred cEEEEecCC-----CEEEEEECCCCceEEEEECCCCCC--ceEECCCCCEEEEEECC-----CCeEEEEECCCCcEEEec
Confidence 567777655 3788899887764332111 1122 11222244 46777653 2468899998877644 2
Q ss_pred ccccCcccceEEEEE--CCEEEEEeccCCCCCCCeeEEEeCCCCeEEEeccCCCCCceeEEEEE-CCEEEEEecCCCCCC
Q 007704 436 RSMLQKRFALAAAEL--NGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL-NGKLYALGGFDGSAM 512 (592)
Q Consensus 436 ~~~p~~R~~~~a~~~--~g~IYV~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~~s~v~~-~~~Lyv~GG~~~~~~ 512 (592)
+....+ ...+.. ++.+|+.++.+ ..+.+||+.+..- +...+.....++++.. ++.+++++..+.
T Consensus 70 ~~~~~~---~~~~~~~~g~~l~~~~~~~-----~~l~~~d~~~~~~--~~~~~~~~~~~~~~~~~dg~~l~~~~~~~--- 136 (300)
T TIGR03866 70 PSGPDP---ELFALHPNGKILYIANEDD-----NLVTVIDIETRKV--LAEIPVGVEPEGMAVSPDGKIVVNTSETT--- 136 (300)
T ss_pred cCCCCc---cEEEECCCCCEEEEEcCCC-----CeEEEEECCCCeE--EeEeeCCCCcceEEECCCCCEEEEEecCC---
Confidence 221111 122222 34566665432 3688899987542 2111111111223332 677777765332
Q ss_pred CCeEEEEeCCCCeE
Q 007704 513 VPSIEVYDPRLGSW 526 (592)
Q Consensus 513 ~~~v~~yD~~t~~W 526 (592)
+.+..||..+..-
T Consensus 137 -~~~~~~d~~~~~~ 149 (300)
T TIGR03866 137 -NMAHFIDTKTYEI 149 (300)
T ss_pred -CeEEEEeCCCCeE
Confidence 2466678776543
No 63
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=95.94 E-value=2.2 Score=45.49 Aligned_cols=188 Identities=18% Similarity=0.223 Sum_probs=102.0
Q ss_pred eEEEEECCEEEEEeeCCCCCCcceEEEEECCCCe--EEECCCCCCCCcceEEEEECCEEEEEecCCCCcccceEEEEeCC
Q 007704 351 ASAAMLNGELYIFGGGDGNSWHNTVESYSPANDE--WTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLD 428 (592)
Q Consensus 351 ~s~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~--W~~l~~lp~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~v~~yD~~ 428 (592)
.+.++.++.+|+.+.. ..+++||..+++ |+.-- +.. ...+.+..++.+|+.+. + ..++.+|..
T Consensus 59 ~~p~v~~~~v~v~~~~------g~v~a~d~~tG~~~W~~~~--~~~-~~~~p~v~~~~v~v~~~-~-----g~l~ald~~ 123 (377)
T TIGR03300 59 LQPAVAGGKVYAADAD------GTVVALDAETGKRLWRVDL--DER-LSGGVGADGGLVFVGTE-K-----GEVIALDAE 123 (377)
T ss_pred cceEEECCEEEEECCC------CeEEEEEccCCcEeeeecC--CCC-cccceEEcCCEEEEEcC-C-----CEEEEEECC
Confidence 3445668888876542 369999988764 86431 111 11223444677776432 2 478999987
Q ss_pred CCe--EEEcccccCcccceEEEEECCEEEEEeccCCCCCCCeeEEEeCCCCe--EEEeccCCC--CCceeEEEEECCEEE
Q 007704 429 IGK--WIRTRSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHY--WTKIANMNR--RRGCHSLAVLNGKLY 502 (592)
Q Consensus 429 t~~--W~~i~~~p~~R~~~~a~~~~g~IYV~GG~~~~~~~~~v~~yD~~t~~--W~~i~~~p~--~R~~~s~v~~~~~Ly 502 (592)
+++ |+.-.. .. .....+..++.+|+..+ ...++.+|++++. |+.-...+. .+...+.+..++.+|
T Consensus 124 tG~~~W~~~~~--~~-~~~~p~v~~~~v~v~~~------~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~ 194 (377)
T TIGR03300 124 DGKELWRAKLS--SE-VLSPPLVANGLVVVRTN------DGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVL 194 (377)
T ss_pred CCcEeeeeccC--ce-eecCCEEECCEEEEECC------CCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEE
Confidence 764 764321 11 11223446788877543 1458899998764 875432221 122233455576554
Q ss_pred EEecCCCCCCCCeEEEEeCCCC--eEEEcCCCCCCC--------cceEEEEECCEEEEEecccCCCccccEEEEEcCC--
Q 007704 503 ALGGFDGSAMVPSIEVYDPRLG--SWMSGEPMKLSR--------GYLGAAVVKEAIYVIGGVKNGSEIVDTVERFKEG-- 570 (592)
Q Consensus 503 v~GG~~~~~~~~~v~~yD~~t~--~W~~v~~lp~~R--------~~~s~~v~~~~Iyv~GG~~~~~~~~~~v~~Yd~~-- 570 (592)
+|..+ ..+..+|+.+. .|+.-...+... ...+.++.++.+|+.+. + ..+++||++
T Consensus 195 -~~~~~-----g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~-~------g~l~a~d~~tG 261 (377)
T TIGR03300 195 -VGFAG-----GKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSY-Q------GRVAALDLRSG 261 (377)
T ss_pred -EECCC-----CEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEc-C------CEEEEEECCCC
Confidence 44322 36889998765 486532212111 11233445677776443 1 347777765
Q ss_pred -CcEEE
Q 007704 571 -QGWEE 575 (592)
Q Consensus 571 -~~W~~ 575 (592)
..|..
T Consensus 262 ~~~W~~ 267 (377)
T TIGR03300 262 RVLWKR 267 (377)
T ss_pred cEEEee
Confidence 34654
No 64
>PRK04792 tolB translocation protein TolB; Provisional
Probab=95.87 E-value=2.3 Score=46.95 Aligned_cols=188 Identities=10% Similarity=0.054 Sum_probs=99.5
Q ss_pred ceEEEEECCCCeEEECCCCCCCCcceEEEEECC-EEEEEecCCCCcccceEEEEeCCCCeEEEcccccCcccceEEEEEC
Q 007704 373 NTVESYSPANDEWTSRPSLNGTKGSLAGATIDN-KIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELN 451 (592)
Q Consensus 373 ~~v~~yd~~t~~W~~l~~lp~~r~~~~~~~~~~-~Iyv~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~~~a~~~~ 451 (592)
..+|.+|+.+++-..+...+...... ..+-++ +|++....++ ..+++.+|..+++.+.+......-...+ ..-+
T Consensus 242 ~~L~~~dl~tg~~~~lt~~~g~~~~~-~wSPDG~~La~~~~~~g---~~~Iy~~dl~tg~~~~lt~~~~~~~~p~-wSpD 316 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSFPGINGAP-RFSPDGKKLALVLSKDG---QPEIYVVDIATKALTRITRHRAIDTEPS-WHPD 316 (448)
T ss_pred cEEEEEECCCCCeEEecCCCCCcCCe-eECCCCCEEEEEEeCCC---CeEEEEEECCCCCeEECccCCCCccceE-ECCC
Confidence 57999999988877775554322221 222344 4655543322 3589999999998887654221111111 1124
Q ss_pred C-EEEEEeccCCCCCCCeeEEEeCCCCeEEEeccCCCCCceeEEEEECCEEEEEecCCCCCCCCeEEEEeCCCCeEEEcC
Q 007704 452 G-VLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGE 530 (592)
Q Consensus 452 g-~IYV~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~~s~v~~~~~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~ 530 (592)
+ .|++.....+ ...++++|+.++.++++..... ........-+++.+++.+.... ...++.+|+.+...+.+.
T Consensus 317 G~~I~f~s~~~g---~~~Iy~~dl~~g~~~~Lt~~g~-~~~~~~~SpDG~~l~~~~~~~g--~~~I~~~dl~~g~~~~lt 390 (448)
T PRK04792 317 GKSLIFTSERGG---KPQIYRVNLASGKVSRLTFEGE-QNLGGSITPDGRSMIMVNRTNG--KFNIARQDLETGAMQVLT 390 (448)
T ss_pred CCEEEEEECCCC---CceEEEEECCCCCEEEEecCCC-CCcCeeECCCCCEEEEEEecCC--ceEEEEEECCCCCeEEcc
Confidence 4 4554432222 2579999999999988742111 1111112224444444333222 347899999998887765
Q ss_pred CCCCCCcceEEEEECCEEEEEecccCCCccccEEEEEcCCCcEEEc
Q 007704 531 PMKLSRGYLGAAVVKEAIYVIGGVKNGSEIVDTVERFKEGQGWEEI 576 (592)
Q Consensus 531 ~lp~~R~~~s~~v~~~~Iyv~GG~~~~~~~~~~v~~Yd~~~~W~~v 576 (592)
.-.... .. ...-+++.+++....+. ...+++++.+.++...
T Consensus 391 ~~~~d~-~p-s~spdG~~I~~~~~~~g---~~~l~~~~~~G~~~~~ 431 (448)
T PRK04792 391 STRLDE-SP-SVAPNGTMVIYSTTYQG---KQVLAAVSIDGRFKAR 431 (448)
T ss_pred CCCCCC-Cc-eECCCCCEEEEEEecCC---ceEEEEEECCCCceEE
Confidence 322111 11 12224554444443322 1457788877556543
No 65
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=95.81 E-value=2.1 Score=41.95 Aligned_cols=174 Identities=18% Similarity=0.259 Sum_probs=101.1
Q ss_pred ceEEEEECCCCe--EEECCCCCCCCcceE--EEEECCEEEEEecCCCCcccceEEEEeCCCCe--EEEcccccCcccceE
Q 007704 373 NTVESYSPANDE--WTSRPSLNGTKGSLA--GATIDNKIFAIGGGNGLECFSDVEMLDLDIGK--WIRTRSMLQKRFALA 446 (592)
Q Consensus 373 ~~v~~yd~~t~~--W~~l~~lp~~r~~~~--~~~~~~~Iyv~GG~~~~~~~~~v~~yD~~t~~--W~~i~~~p~~R~~~~ 446 (592)
..+.++|+.+++ |+.- +..+..... .+..++.+|+..+ ...++.+|+.+++ |+.-. +.+-.. .
T Consensus 3 g~l~~~d~~tG~~~W~~~--~~~~~~~~~~~~~~~~~~v~~~~~------~~~l~~~d~~tG~~~W~~~~--~~~~~~-~ 71 (238)
T PF13360_consen 3 GTLSALDPRTGKELWSYD--LGPGIGGPVATAVPDGGRVYVASG------DGNLYALDAKTGKVLWRFDL--PGPISG-A 71 (238)
T ss_dssp SEEEEEETTTTEEEEEEE--CSSSCSSEEETEEEETTEEEEEET------TSEEEEEETTTSEEEEEEEC--SSCGGS-G
T ss_pred CEEEEEECCCCCEEEEEE--CCCCCCCccceEEEeCCEEEEEcC------CCEEEEEECCCCCEEEEeec--cccccc-e
Confidence 357788887764 7652 211223323 3347888988843 4689999998886 55432 222122 2
Q ss_pred EEEECCEEEEEeccCCCCCCCeeEEEeCCCCe--EE-EeccCCC--CCceeEEEEECCEEEEEecCCCCCCCCeEEEEeC
Q 007704 447 AAELNGVLYATGGYDGNEYMNSAERFDPREHY--WT-KIANMNR--RRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDP 521 (592)
Q Consensus 447 a~~~~g~IYV~GG~~~~~~~~~v~~yD~~t~~--W~-~i~~~p~--~R~~~s~v~~~~~Lyv~GG~~~~~~~~~v~~yD~ 521 (592)
....++.+|+..+. +.++.+|..++. |+ .....+. .+......+.++.+|+... ...+..+|+
T Consensus 72 ~~~~~~~v~v~~~~------~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~l~~~d~ 139 (238)
T PF13360_consen 72 PVVDGGRVYVGTSD------GSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS------SGKLVALDP 139 (238)
T ss_dssp EEEETTEEEEEETT------SEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET------CSEEEEEET
T ss_pred eeecccccccccce------eeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec------cCcEEEEec
Confidence 47789999887631 378999988765 98 4533232 2233444455777777653 247899999
Q ss_pred CCCe--EEEcCCCCCCC--------cceEEEEECCEEEEEecccCCCccccEEEEEcCC-C--cEEEc
Q 007704 522 RLGS--WMSGEPMKLSR--------GYLGAAVVKEAIYVIGGVKNGSEIVDTVERFKEG-Q--GWEEI 576 (592)
Q Consensus 522 ~t~~--W~~v~~lp~~R--------~~~s~~v~~~~Iyv~GG~~~~~~~~~~v~~Yd~~-~--~W~~v 576 (592)
.++. |..-...+... .....+..++.+|+..+... +..+|.. . .|+..
T Consensus 140 ~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~-------~~~~d~~tg~~~w~~~ 200 (238)
T PF13360_consen 140 KTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGR-------VVAVDLATGEKLWSKP 200 (238)
T ss_dssp TTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSS-------EEEEETTTTEEEEEEC
T ss_pred CCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCe-------EEEEECCCCCEEEEec
Confidence 8764 77644333211 12233344678888766421 4555876 4 38544
No 66
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=95.78 E-value=2.2 Score=45.55 Aligned_cols=185 Identities=17% Similarity=0.261 Sum_probs=103.8
Q ss_pred EEEEECCEEEEEeeCCCCCCcceEEEEECCCC--eEEECCCCCCCCcceEEEEECCEEEEEecCCCCcccceEEEEeCCC
Q 007704 352 SAAMLNGELYIFGGGDGNSWHNTVESYSPAND--EWTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDI 429 (592)
Q Consensus 352 s~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~--~W~~l~~lp~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~v~~yD~~t 429 (592)
+.++.++.+|+. +.+ ..++.+|..++ .|+.- ++.. .....+..++++|+..+ ...++.+|+.+
T Consensus 100 ~p~v~~~~v~v~-~~~-----g~l~ald~~tG~~~W~~~--~~~~-~~~~p~v~~~~v~v~~~------~g~l~a~d~~t 164 (377)
T TIGR03300 100 GVGADGGLVFVG-TEK-----GEVIALDAEDGKELWRAK--LSSE-VLSPPLVANGLVVVRTN------DGRLTALDAAT 164 (377)
T ss_pred ceEEcCCEEEEE-cCC-----CEEEEEECCCCcEeeeec--cCce-eecCCEEECCEEEEECC------CCeEEEEEcCC
Confidence 344457777754 333 46999998776 47653 2211 11223345777777543 24688999987
Q ss_pred Ce--EEEcccccC--cccceEEEEECCEEEEEeccCCCCCCCeeEEEeCCCCe--EEEeccCCCCC--------ceeEEE
Q 007704 430 GK--WIRTRSMLQ--KRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHY--WTKIANMNRRR--------GCHSLA 495 (592)
Q Consensus 430 ~~--W~~i~~~p~--~R~~~~a~~~~g~IYV~GG~~~~~~~~~v~~yD~~t~~--W~~i~~~p~~R--------~~~s~v 495 (592)
++ |+.-...+. .+...+.+..++.+|+ |..+ ..+..+|++++. |+.-...+... ...+.+
T Consensus 165 G~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~-~~~~-----g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~ 238 (377)
T TIGR03300 165 GERLWTYSRVTPALTLRGSASPVIADGGVLV-GFAG-----GKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPV 238 (377)
T ss_pred CceeeEEccCCCceeecCCCCCEEECCEEEE-ECCC-----CEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccE
Confidence 64 764322211 1222334556776654 3322 368899988764 86532222111 122334
Q ss_pred EECCEEEEEecCCCCCCCCeEEEEeCCCC--eEEEcCCCCCCCcceEEEEECCEEEEEecccCCCccccEEEEEcCC---
Q 007704 496 VLNGKLYALGGFDGSAMVPSIEVYDPRLG--SWMSGEPMKLSRGYLGAAVVKEAIYVIGGVKNGSEIVDTVERFKEG--- 570 (592)
Q Consensus 496 ~~~~~Lyv~GG~~~~~~~~~v~~yD~~t~--~W~~v~~lp~~R~~~s~~v~~~~Iyv~GG~~~~~~~~~~v~~Yd~~--- 570 (592)
+.++.+|+.+. + ..++.||+.+. .|+.-. ....+.++.++.||+.... ..++++|..
T Consensus 239 ~~~~~vy~~~~-~-----g~l~a~d~~tG~~~W~~~~-----~~~~~p~~~~~~vyv~~~~-------G~l~~~d~~tG~ 300 (377)
T TIGR03300 239 VDGGQVYAVSY-Q-----GRVAALDLRSGRVLWKRDA-----SSYQGPAVDDNRLYVTDAD-------GVVVALDRRSGS 300 (377)
T ss_pred EECCEEEEEEc-C-----CEEEEEECCCCcEEEeecc-----CCccCceEeCCEEEEECCC-------CeEEEEECCCCc
Confidence 55888888643 1 35889998765 476531 1223445668888886431 458888875
Q ss_pred CcEEE
Q 007704 571 QGWEE 575 (592)
Q Consensus 571 ~~W~~ 575 (592)
..|..
T Consensus 301 ~~W~~ 305 (377)
T TIGR03300 301 ELWKN 305 (377)
T ss_pred EEEcc
Confidence 45865
No 67
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=95.78 E-value=0.54 Score=48.48 Aligned_cols=117 Identities=15% Similarity=0.213 Sum_probs=73.1
Q ss_pred EEEecCCCCc--ccceEEEEeCCCCeEEEcccccCcccceEEEEE-CCEEEEEeccCCCC-CCCeeEEEeCCCCeEEEec
Q 007704 408 FAIGGGNGLE--CFSDVEMLDLDIGKWIRTRSMLQKRFALAAAEL-NGVLYATGGYDGNE-YMNSAERFDPREHYWTKIA 483 (592)
Q Consensus 408 yv~GG~~~~~--~~~~v~~yD~~t~~W~~i~~~p~~R~~~~a~~~-~g~IYV~GG~~~~~-~~~~v~~yD~~t~~W~~i~ 483 (592)
||-|-++... .-..+.+||+.+.+|.....-.... -..+... ++++|+.|-..-.. ....+..||..+.+|..++
T Consensus 2 ~VGG~F~~aGsL~C~~lC~yd~~~~qW~~~g~~i~G~-V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~ 80 (281)
T PF12768_consen 2 YVGGSFTSAGSLPCPGLCLYDTDNSQWSSPGNGISGT-VTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLG 80 (281)
T ss_pred EEeeecCCCCCcCCCEEEEEECCCCEeecCCCCceEE-EEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecC
Confidence 4444344333 3568999999999999876542222 2333333 77888888665444 4567899999999999886
Q ss_pred cC-----CCCCceeEEEEE---CCEEEEEecCCCCCCCCeEEEEeCCCCeEEEcCC
Q 007704 484 NM-----NRRRGCHSLAVL---NGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEP 531 (592)
Q Consensus 484 ~~-----p~~R~~~s~v~~---~~~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~ 531 (592)
.. |.+. .+.... ...+++.|.. .....-+..|| -.+|..+..
T Consensus 81 ~~~s~~ipgpv--~a~~~~~~d~~~~~~aG~~--~~g~~~l~~~d--Gs~W~~i~~ 130 (281)
T PF12768_consen 81 GGSSNSIPGPV--TALTFISNDGSNFWVAGRS--ANGSTFLMKYD--GSSWSSIGS 130 (281)
T ss_pred CcccccCCCcE--EEEEeeccCCceEEEecee--cCCCceEEEEc--CCceEeccc
Confidence 62 3332 223222 3457777664 22234566774 567998865
No 68
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=95.58 E-value=2 Score=41.56 Aligned_cols=181 Identities=19% Similarity=0.308 Sum_probs=83.8
Q ss_pred CCEEEEEeeCCCCCCcceEEEEECCCCeEEECCCCCCCCcce-EEEE-ECCEEEEEecCCCCcccceEEEEeCCCCeEEE
Q 007704 357 NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSL-AGAT-IDNKIFAIGGGNGLECFSDVEMLDLDIGKWIR 434 (592)
Q Consensus 357 ~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~lp~~r~~~-~~~~-~~~~Iyv~GG~~~~~~~~~v~~yD~~t~~W~~ 434 (592)
++.++++|+.+ ..+..||..+..-... +....... .+.. -+++.+++|+.+ ..+.+||..+++...
T Consensus 20 ~~~~l~~~~~~-----g~i~i~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~~-----~~i~i~~~~~~~~~~ 87 (289)
T cd00200 20 DGKLLATGSGD-----GTIKVWDLETGELLRT--LKGHTGPVRDVAASADGTYLASGSSD-----KTIRLWDLETGECVR 87 (289)
T ss_pred CCCEEEEeecC-----cEEEEEEeeCCCcEEE--EecCCcceeEEEECCCCCEEEEEcCC-----CeEEEEEcCcccceE
Confidence 45677777754 4577788776542111 11111111 2222 245566666643 478888887753221
Q ss_pred cccccCcc-cceEEEEE-CCEEEEEeccCCCCCCCeeEEEeCCCCeEEEeccCCCCCceeEEEEE-CCEEEEEecCCCCC
Q 007704 435 TRSMLQKR-FALAAAEL-NGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL-NGKLYALGGFDGSA 511 (592)
Q Consensus 435 i~~~p~~R-~~~~a~~~-~g~IYV~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~~s~v~~-~~~Lyv~GG~~~~~ 511 (592)
. +.... .-.++... ++.+++.|+.+ ..+.+||+.+..-...-. .......++... ++.+++.|+.+
T Consensus 88 ~--~~~~~~~i~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~--- 156 (289)
T cd00200 88 T--LTGHTSYVSSVAFSPDGRILSSSSRD-----KTIKVWDVETGKCLTTLR-GHTDWVNSVAFSPDGTFVASSSQD--- 156 (289)
T ss_pred E--EeccCCcEEEEEEcCCCCEEEEecCC-----CeEEEEECCCcEEEEEec-cCCCcEEEEEEcCcCCEEEEEcCC---
Confidence 1 11111 11222222 34666666533 468889988554322211 111122233333 34555554423
Q ss_pred CCCeEEEEeCCCCeEEEcCCCCCCC-cceEEEEE-CCEEEEEecccCCCccccEEEEEcCC
Q 007704 512 MVPSIEVYDPRLGSWMSGEPMKLSR-GYLGAAVV-KEAIYVIGGVKNGSEIVDTVERFKEG 570 (592)
Q Consensus 512 ~~~~v~~yD~~t~~W~~v~~lp~~R-~~~s~~v~-~~~Iyv~GG~~~~~~~~~~v~~Yd~~ 570 (592)
..+.+||..+..-.. .+.... ...++... ++..+++|+.+ ..+.+||..
T Consensus 157 --~~i~i~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~~------~~i~i~d~~ 207 (289)
T cd00200 157 --GTIKLWDLRTGKCVA--TLTGHTGEVNSVAFSPDGEKLLSSSSD------GTIKLWDLS 207 (289)
T ss_pred --CcEEEEEccccccce--eEecCccccceEEECCCcCEEEEecCC------CcEEEEECC
Confidence 357888886433211 111111 12233333 34355556653 347788864
No 69
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=95.57 E-value=0.93 Score=48.94 Aligned_cols=185 Identities=17% Similarity=0.223 Sum_probs=97.3
Q ss_pred CCEEEEEeeCCCCCCcceEEEEECCCCeE-EECCCCCCCCcceEEEEECCEEEEEecCCCCcccceEEEEeCCCCeEE-E
Q 007704 357 NGELYIFGGGDGNSWHNTVESYSPANDEW-TSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIGKWI-R 434 (592)
Q Consensus 357 ~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W-~~l~~lp~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~v~~yD~~t~~W~-~ 434 (592)
+|+++.+|+..| -|-+||..+..- +.+-.-..|...-..+..++.+++.|+.+. -+-.+|..+..=+ .
T Consensus 79 DG~LlaaGD~sG-----~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~-----v~k~~d~s~a~v~~~ 148 (487)
T KOG0310|consen 79 DGRLLAAGDESG-----HVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDK-----VVKYWDLSTAYVQAE 148 (487)
T ss_pred CCeEEEccCCcC-----cEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCc-----eEEEEEcCCcEEEEE
Confidence 799999998664 467888444211 111111122222234456899999987542 3334455444311 1
Q ss_pred cccccCcccceEEEEECCEEEEEeccCCCCCCCeeEEEeCCCCeEEEeccCCCCCceeEEEEE-C-CEEEEEecCCCCCC
Q 007704 435 TRSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL-N-GKLYALGGFDGSAM 512 (592)
Q Consensus 435 i~~~p~~R~~~~a~~~~g~IYV~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~~s~v~~-~-~~Lyv~GG~~~~~~ 512 (592)
+..-..--.+-++...++.|.+.|||++ .+-.||.+..+ ..+-.+..+..--.++.+ + ..|...||
T Consensus 149 l~~htDYVR~g~~~~~~~hivvtGsYDg-----~vrl~DtR~~~-~~v~elnhg~pVe~vl~lpsgs~iasAgG------ 216 (487)
T KOG0310|consen 149 LSGHTDYVRCGDISPANDHIVVTGSYDG-----KVRLWDTRSLT-SRVVELNHGCPVESVLALPSGSLIASAGG------ 216 (487)
T ss_pred ecCCcceeEeeccccCCCeEEEecCCCc-----eEEEEEeccCC-ceeEEecCCCceeeEEEcCCCCEEEEcCC------
Confidence 1111111112223334788999999985 46678888773 223333322222234555 3 34444555
Q ss_pred CCeEEEEeCCCCeEEEcCCCCCCCcce-----EEEEE-CCEEEEEecccCCCccccEEEEEcCCCcEEEc
Q 007704 513 VPSIEVYDPRLGSWMSGEPMKLSRGYL-----GAAVV-KEAIYVIGGVKNGSEIVDTVERFKEGQGWEEI 576 (592)
Q Consensus 513 ~~~v~~yD~~t~~W~~v~~lp~~R~~~-----s~~v~-~~~Iyv~GG~~~~~~~~~~v~~Yd~~~~W~~v 576 (592)
+.+-++|+.++. .++..+..| ++... ++.-++-||.+.. |-+||. ..|+.+
T Consensus 217 -n~vkVWDl~~G~-----qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~------VKVfd~-t~~Kvv 273 (487)
T KOG0310|consen 217 -NSVKVWDLTTGG-----QLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRH------VKVFDT-TNYKVV 273 (487)
T ss_pred -CeEEEEEecCCc-----eehhhhhcccceEEEEEeecCCceEeecccccc------eEEEEc-cceEEE
Confidence 567788876542 222222222 22222 4578888998765 888985 444444
No 70
>PRK04792 tolB translocation protein TolB; Provisional
Probab=95.49 E-value=3.9 Score=45.07 Aligned_cols=190 Identities=12% Similarity=-0.064 Sum_probs=94.9
Q ss_pred cceEEEEECCCCeEEECCCCCCCCcceEEEEECCEEEEEecCCCCcccceEEEEeCCCCeEEEcccccCcccceEEEEEC
Q 007704 372 HNTVESYSPANDEWTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELN 451 (592)
Q Consensus 372 ~~~v~~yd~~t~~W~~l~~lp~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~~~a~~~~ 451 (592)
...++..|.....-+.+...+.+- .....+-+|+.+++..... -...+|++|+.+++-+.+...+......+...-+
T Consensus 197 ~~~l~i~d~dG~~~~~l~~~~~~~-~~p~wSPDG~~La~~s~~~--g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG 273 (448)
T PRK04792 197 PYQLMIADYDGYNEQMLLRSPEPL-MSPAWSPDGRKLAYVSFEN--RKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDG 273 (448)
T ss_pred ceEEEEEeCCCCCceEeecCCCcc-cCceECCCCCEEEEEEecC--CCcEEEEEECCCCCeEEecCCCCCcCCeeECCCC
Confidence 356777776555444332222111 1122223554333332211 1357999999988877665544322222221124
Q ss_pred CEEEEEeccCCCCCCCeeEEEeCCCCeEEEeccCCCCCceeEEEEECC-EEEEEecCCCCCCCCeEEEEeCCCCeEEEcC
Q 007704 452 GVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVLNG-KLYALGGFDGSAMVPSIEVYDPRLGSWMSGE 530 (592)
Q Consensus 452 g~IYV~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~~s~v~~~~-~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~ 530 (592)
..|++....++ ..+++.+|+.++..+++......... ....-++ .|++....++ ...++.+|..++.++.+.
T Consensus 274 ~~La~~~~~~g---~~~Iy~~dl~tg~~~~lt~~~~~~~~-p~wSpDG~~I~f~s~~~g---~~~Iy~~dl~~g~~~~Lt 346 (448)
T PRK04792 274 KKLALVLSKDG---QPEIYVVDIATKALTRITRHRAIDTE-PSWHPDGKSLIFTSERGG---KPQIYRVNLASGKVSRLT 346 (448)
T ss_pred CEEEEEEeCCC---CeEEEEEECCCCCeEECccCCCCccc-eEECCCCCEEEEEECCCC---CceEEEEECCCCCEEEEe
Confidence 45655543332 35799999999988877543211111 1111244 4544433222 257999999998888874
Q ss_pred CCCCCCcceEEEE-ECCEEEEEecccCCCccccEEEEEcCC-CcEEEc
Q 007704 531 PMKLSRGYLGAAV-VKEAIYVIGGVKNGSEIVDTVERFKEG-QGWEEI 576 (592)
Q Consensus 531 ~lp~~R~~~s~~v-~~~~Iyv~GG~~~~~~~~~~v~~Yd~~-~~W~~v 576 (592)
. ........+. -+++.+++.+..++ ...++++|+. .....+
T Consensus 347 ~--~g~~~~~~~~SpDG~~l~~~~~~~g---~~~I~~~dl~~g~~~~l 389 (448)
T PRK04792 347 F--EGEQNLGGSITPDGRSMIMVNRTNG---KFNIARQDLETGAMQVL 389 (448)
T ss_pred c--CCCCCcCeeECCCCCEEEEEEecCC---ceEEEEEECCCCCeEEc
Confidence 2 1111112222 24444444433221 2468888877 555554
No 71
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=95.47 E-value=0.23 Score=51.11 Aligned_cols=119 Identities=18% Similarity=0.243 Sum_probs=75.1
Q ss_pred EEEeccCCCC--CCCeeEEEeCCCCeEEEeccCCCCCceeEEEEE-CCEEEEEecCCCCC-CCCeEEEEeCCCCeEEEcC
Q 007704 455 YATGGYDGNE--YMNSAERFDPREHYWTKIANMNRRRGCHSLAVL-NGKLYALGGFDGSA-MVPSIEVYDPRLGSWMSGE 530 (592)
Q Consensus 455 YV~GG~~~~~--~~~~v~~yD~~t~~W~~i~~~p~~R~~~s~v~~-~~~Lyv~GG~~~~~-~~~~v~~yD~~t~~W~~v~ 530 (592)
||-|-+.... .-..+-.||+.+.+|..+..-..+ .-..+... +++||+.|-..-.. ....+-.||..+.+|..++
T Consensus 2 ~VGG~F~~aGsL~C~~lC~yd~~~~qW~~~g~~i~G-~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~ 80 (281)
T PF12768_consen 2 YVGGSFTSAGSLPCPGLCLYDTDNSQWSSPGNGISG-TVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLG 80 (281)
T ss_pred EEeeecCCCCCcCCCEEEEEECCCCEeecCCCCceE-EEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecC
Confidence 4444454443 256789999999999988755222 22334444 67788777654333 4567889999999999886
Q ss_pred C-----CCCCCcceEEEEEC-CEEEEEecccCCCccccEEEEEcCCCcEEEccc
Q 007704 531 P-----MKLSRGYLGAAVVK-EAIYVIGGVKNGSEIVDTVERFKEGQGWEEINS 578 (592)
Q Consensus 531 ~-----lp~~R~~~s~~v~~-~~Iyv~GG~~~~~~~~~~v~~Yd~~~~W~~v~~ 578 (592)
. +|.+-........+ +.+++.|.... -...+..||- .+|+.+..
T Consensus 81 ~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~---g~~~l~~~dG-s~W~~i~~ 130 (281)
T PF12768_consen 81 GGSSNSIPGPVTALTFISNDGSNFWVAGRSAN---GSTFLMKYDG-SSWSSIGS 130 (281)
T ss_pred CcccccCCCcEEEEEeeccCCceEEEeceecC---CCceEEEEcC-CceEeccc
Confidence 5 23332112222223 45777776532 2356888876 89999876
No 72
>PRK00178 tolB translocation protein TolB; Provisional
Probab=95.42 E-value=3.4 Score=44.98 Aligned_cols=182 Identities=10% Similarity=0.037 Sum_probs=96.1
Q ss_pred ceEEEEECCCCeEEECCCCCCCCcceEEEEECC-EEEEEecCCCCcccceEEEEeCCCCeEEEcccccCcccceEEEEEC
Q 007704 373 NTVESYSPANDEWTSRPSLNGTKGSLAGATIDN-KIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELN 451 (592)
Q Consensus 373 ~~v~~yd~~t~~W~~l~~lp~~r~~~~~~~~~~-~Iyv~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~~~a~~~~ 451 (592)
..+|.+|+.+++-..+...+..-.. ...+-++ +|++....++ ..+++++|..+++.+.+......-.......-+
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~g~~~~-~~~SpDG~~la~~~~~~g---~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg 298 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFEGLNGA-PAWSPDGSKLAFVLSKDG---NPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDG 298 (430)
T ss_pred CEEEEEECCCCCEEEccCCCCCcCC-eEECCCCCEEEEEEccCC---CceEEEEECCCCCeEEcccCCCCcCCeEECCCC
Confidence 4799999999988877554422111 1222244 4544332222 258999999999888765432211111111123
Q ss_pred CEEEEEeccCCCCCCCeeEEEeCCCCeEEEeccCCCCCceeEEEEEC-CEEEEEecCCCCCCCCeEEEEeCCCCeEEEcC
Q 007704 452 GVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVLN-GKLYALGGFDGSAMVPSIEVYDPRLGSWMSGE 530 (592)
Q Consensus 452 g~IYV~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~~s~v~~~-~~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~ 530 (592)
..|++..... ....++.+|+.++.++++.... .........-+ +.|++....++ ...++.+|+.+..++.+.
T Consensus 299 ~~i~f~s~~~---g~~~iy~~d~~~g~~~~lt~~~-~~~~~~~~Spdg~~i~~~~~~~~---~~~l~~~dl~tg~~~~lt 371 (430)
T PRK00178 299 RTLYFTSDRG---GKPQIYKVNVNGGRAERVTFVG-NYNARPRLSADGKTLVMVHRQDG---NFHVAAQDLQRGSVRILT 371 (430)
T ss_pred CEEEEEECCC---CCceEEEEECCCCCEEEeecCC-CCccceEECCCCCEEEEEEccCC---ceEEEEEECCCCCEEEcc
Confidence 4555543222 2357899999998888774321 11111111224 44544433222 236999999998888876
Q ss_pred CCCCCCcceEEEEECCEEEEEecccCCCccccEEEEEcCC
Q 007704 531 PMKLSRGYLGAAVVKEAIYVIGGVKNGSEIVDTVERFKEG 570 (592)
Q Consensus 531 ~lp~~R~~~s~~v~~~~Iyv~GG~~~~~~~~~~v~~Yd~~ 570 (592)
..... ..-...-+++.+++....++ ...++..+..
T Consensus 372 ~~~~~--~~p~~spdg~~i~~~~~~~g---~~~l~~~~~~ 406 (430)
T PRK00178 372 DTSLD--ESPSVAPNGTMLIYATRQQG---RGVLMLVSIN 406 (430)
T ss_pred CCCCC--CCceECCCCCEEEEEEecCC---ceEEEEEECC
Confidence 43211 11112225666666554332 1446777765
No 73
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=95.34 E-value=5 Score=43.16 Aligned_cols=196 Identities=14% Similarity=0.065 Sum_probs=103.0
Q ss_pred CCEEEEEeeCCCCCCcceEEEEECCCCeEEECCCCCCCCcceEEEEECC-EEEEEecCCCCcccceEEEEeCCCCeEEEc
Q 007704 357 NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATIDN-KIFAIGGGNGLECFSDVEMLDLDIGKWIRT 435 (592)
Q Consensus 357 ~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~lp~~r~~~~~~~~~~-~Iyv~GG~~~~~~~~~v~~yD~~t~~W~~i 435 (592)
+++.+++....+.. ..++++|..++....+...+...... ...-++ .|++....++ ..+++.+|+.++..+.+
T Consensus 200 dg~~la~~~~~~~~--~~i~v~d~~~g~~~~~~~~~~~~~~~-~~spDg~~l~~~~~~~~---~~~i~~~d~~~~~~~~l 273 (417)
T TIGR02800 200 DGQKLAYVSFESGK--PEIYVQDLATGQREKVASFPGMNGAP-AFSPDGSKLAVSLSKDG---NPDIYVMDLDGKQLTRL 273 (417)
T ss_pred CCCEEEEEEcCCCC--cEEEEEECCCCCEEEeecCCCCccce-EECCCCCEEEEEECCCC---CccEEEEECCCCCEEEC
Confidence 55555555543322 57999999988776665443332221 222354 4555443222 25799999998887776
Q ss_pred ccccCcccceEEEEECC-EEEEEeccCCCCCCCeeEEEeCCCCeEEEeccCCCCCceeEEE-EECCEEEEEecCCCCCCC
Q 007704 436 RSMLQKRFALAAAELNG-VLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLA-VLNGKLYALGGFDGSAMV 513 (592)
Q Consensus 436 ~~~p~~R~~~~a~~~~g-~IYV~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~~s~v-~~~~~Lyv~GG~~~~~~~ 513 (592)
............ .-++ +|++.....+ ...++++|+.+..+..+.... ....... .-+++.+++...+. ..
T Consensus 274 ~~~~~~~~~~~~-s~dg~~l~~~s~~~g---~~~iy~~d~~~~~~~~l~~~~--~~~~~~~~spdg~~i~~~~~~~--~~ 345 (417)
T TIGR02800 274 TNGPGIDTEPSW-SPDGKSIAFTSDRGG---SPQIYMMDADGGEVRRLTFRG--GYNASPSWSPDGDLIAFVHREG--GG 345 (417)
T ss_pred CCCCCCCCCEEE-CCCCCEEEEEECCCC---CceEEEEECCCCCEEEeecCC--CCccCeEECCCCCEEEEEEccC--Cc
Confidence 543221111111 1244 4544432222 247999999988887764322 1111222 22566666655433 23
Q ss_pred CeEEEEeCCCCeEEEcCCCCCCCcceEEEEECCEEEEEecccCCCccccEEEEEcCCC
Q 007704 514 PSIEVYDPRLGSWMSGEPMKLSRGYLGAAVVKEAIYVIGGVKNGSEIVDTVERFKEGQ 571 (592)
Q Consensus 514 ~~v~~yD~~t~~W~~v~~lp~~R~~~s~~v~~~~Iyv~GG~~~~~~~~~~v~~Yd~~~ 571 (592)
..++.+|+.+..++.+..-... .......++..+++....+.. ..+++++...
T Consensus 346 ~~i~~~d~~~~~~~~l~~~~~~--~~p~~spdg~~l~~~~~~~~~---~~l~~~~~~g 398 (417)
T TIGR02800 346 FNIAVMDLDGGGERVLTDTGLD--ESPSFAPNGRMILYATTRGGR---GVLGLVSTDG 398 (417)
T ss_pred eEEEEEeCCCCCeEEccCCCCC--CCceECCCCCEEEEEEeCCCc---EEEEEEECCC
Confidence 4799999998777776532111 111222345544444443321 4566766553
No 74
>PRK04922 tolB translocation protein TolB; Provisional
Probab=95.19 E-value=4.4 Score=44.36 Aligned_cols=194 Identities=14% Similarity=0.137 Sum_probs=101.2
Q ss_pred CCEEEEEeeCCCCCCcceEEEEECCCCeEEECCCCCCCCcceEEEEECC-EEEEEecCCCCcccceEEEEeCCCCeEEEc
Q 007704 357 NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATIDN-KIFAIGGGNGLECFSDVEMLDLDIGKWIRT 435 (592)
Q Consensus 357 ~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~lp~~r~~~~~~~~~~-~Iyv~GG~~~~~~~~~v~~yD~~t~~W~~i 435 (592)
+++-+++....+. ...++.+|..+++...+...+.... .....-++ +|++....++ ..+++++|+.+++.+++
T Consensus 214 Dg~~la~~s~~~~--~~~l~~~dl~~g~~~~l~~~~g~~~-~~~~SpDG~~l~~~~s~~g---~~~Iy~~d~~~g~~~~l 287 (433)
T PRK04922 214 DGKKLAYVSFERG--RSAIYVQDLATGQRELVASFRGING-APSFSPDGRRLALTLSRDG---NPEIYVMDLGSRQLTRL 287 (433)
T ss_pred CCCEEEEEecCCC--CcEEEEEECCCCCEEEeccCCCCcc-CceECCCCCEEEEEEeCCC---CceEEEEECCCCCeEEC
Confidence 4444444443322 3579999999988877765543221 12222345 4554433222 25899999999887666
Q ss_pred ccccCcccceEEEEECC-EEEEEeccCCCCCCCeeEEEeCCCCeEEEeccCCCCCceeEEEEE-CC-EEEEEecCCCCCC
Q 007704 436 RSMLQKRFALAAAELNG-VLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL-NG-KLYALGGFDGSAM 512 (592)
Q Consensus 436 ~~~p~~R~~~~a~~~~g-~IYV~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~~s~v~~-~~-~Lyv~GG~~~~~~ 512 (592)
..........+. .-++ .|++.....+ ...++.+|..++.++++.... ......... ++ .|++..+. +.
T Consensus 288 t~~~~~~~~~~~-spDG~~l~f~sd~~g---~~~iy~~dl~~g~~~~lt~~g--~~~~~~~~SpDG~~Ia~~~~~-~~-- 358 (433)
T PRK04922 288 TNHFGIDTEPTW-APDGKSIYFTSDRGG---RPQIYRVAASGGSAERLTFQG--NYNARASVSPDGKKIAMVHGS-GG-- 358 (433)
T ss_pred ccCCCCccceEE-CCCCCEEEEEECCCC---CceEEEEECCCCCeEEeecCC--CCccCEEECCCCCEEEEEECC-CC--
Confidence 432211111111 1244 4444432222 257899999888888775321 111122222 44 45554432 11
Q ss_pred CCeEEEEeCCCCeEEEcCCCCCCCcceEEEEECCEEEEEecccCCCccccEEEEEcCC
Q 007704 513 VPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVVKEAIYVIGGVKNGSEIVDTVERFKEG 570 (592)
Q Consensus 513 ~~~v~~yD~~t~~W~~v~~lp~~R~~~s~~v~~~~Iyv~GG~~~~~~~~~~v~~Yd~~ 570 (592)
...++++|+.++.++.+..-... ......-+++.+++.....+ ...++.++..
T Consensus 359 ~~~I~v~d~~~g~~~~Lt~~~~~--~~p~~spdG~~i~~~s~~~g---~~~L~~~~~~ 411 (433)
T PRK04922 359 QYRIAVMDLSTGSVRTLTPGSLD--ESPSFAPNGSMVLYATREGG---RGVLAAVSTD 411 (433)
T ss_pred ceeEEEEECCCCCeEECCCCCCC--CCceECCCCCEEEEEEecCC---ceEEEEEECC
Confidence 23789999998888877532211 11112225555555544322 2568888876
No 75
>PRK05137 tolB translocation protein TolB; Provisional
Probab=95.16 E-value=4.9 Score=43.98 Aligned_cols=205 Identities=13% Similarity=0.009 Sum_probs=103.4
Q ss_pred CCEEEEEeeCCCCCCcceEEEEECCCCeEEECCCCCCCCcceEEEEECC-EEEEEecCCCCcccceEEEEeCCCCeEEEc
Q 007704 357 NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATIDN-KIFAIGGGNGLECFSDVEMLDLDIGKWIRT 435 (592)
Q Consensus 357 ~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~lp~~r~~~~~~~~~~-~Iyv~GG~~~~~~~~~v~~yD~~t~~W~~i 435 (592)
+++-+++....+.. ..++.+|+.+++...+...+...... ..+-+| +|++....++ ..++|.+|..++..+.+
T Consensus 212 DG~~lay~s~~~g~--~~i~~~dl~~g~~~~l~~~~g~~~~~-~~SPDG~~la~~~~~~g---~~~Iy~~d~~~~~~~~L 285 (435)
T PRK05137 212 NRQEITYMSYANGR--PRVYLLDLETGQRELVGNFPGMTFAP-RFSPDGRKVVMSLSQGG---NTDIYTMDLRSGTTTRL 285 (435)
T ss_pred CCCEEEEEEecCCC--CEEEEEECCCCcEEEeecCCCcccCc-EECCCCCEEEEEEecCC---CceEEEEECCCCceEEc
Confidence 55544444332222 67999999999888776554332222 222355 4544433222 35799999999887776
Q ss_pred ccccCcccceEEEEECC-EEEEEeccCCCCCCCeeEEEeCCCCeEEEeccCCCCCceeEEEEECCEEEEEecCCCCCCCC
Q 007704 436 RSMLQKRFALAAAELNG-VLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVP 514 (592)
Q Consensus 436 ~~~p~~R~~~~a~~~~g-~IYV~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~~s~v~~~~~Lyv~GG~~~~~~~~ 514 (592)
...+..-... ...-++ .|+......+ ...++++|+.+...+.+.... .........-+++.+++...... ..
T Consensus 286 t~~~~~~~~~-~~spDG~~i~f~s~~~g---~~~Iy~~d~~g~~~~~lt~~~-~~~~~~~~SpdG~~ia~~~~~~~--~~ 358 (435)
T PRK05137 286 TDSPAIDTSP-SYSPDGSQIVFESDRSG---SPQLYVMNADGSNPRRISFGG-GRYSTPVWSPRGDLIAFTKQGGG--QF 358 (435)
T ss_pred cCCCCccCce-eEcCCCCEEEEEECCCC---CCeEEEEECCCCCeEEeecCC-CcccCeEECCCCCEEEEEEcCCC--ce
Confidence 5433211111 111244 4443322221 257899999888777765322 11111112224444444332221 24
Q ss_pred eEEEEeCCCCeEEEcCCCCCCCcceEEEEE-CCEEEEEecccCCCccccEEEEEcCC-CcEEEcc
Q 007704 515 SIEVYDPRLGSWMSGEPMKLSRGYLGAAVV-KEAIYVIGGVKNGSEIVDTVERFKEG-QGWEEIN 577 (592)
Q Consensus 515 ~v~~yD~~t~~W~~v~~lp~~R~~~s~~v~-~~~Iyv~GG~~~~~~~~~~v~~Yd~~-~~W~~v~ 577 (592)
.++.+|+.....+.+..-. . ....... +++.+++............++.+|.. ..-..++
T Consensus 359 ~i~~~d~~~~~~~~lt~~~--~-~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~ 420 (435)
T PRK05137 359 SIGVMKPDGSGERILTSGF--L-VEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVP 420 (435)
T ss_pred EEEEEECCCCceEeccCCC--C-CCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEcc
Confidence 7889998777666554321 1 1122222 45554444432221112468899887 5445554
No 76
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=95.11 E-value=1.4 Score=46.02 Aligned_cols=138 Identities=19% Similarity=0.115 Sum_probs=90.7
Q ss_pred CEEEEEecCC--C--Cccc-ceEEEEeCCCC-----eEEEcccccCcccceEEEEECCEEEEEeccCCCCCCCeeEEEeC
Q 007704 405 NKIFAIGGGN--G--LECF-SDVEMLDLDIG-----KWIRTRSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAERFDP 474 (592)
Q Consensus 405 ~~Iyv~GG~~--~--~~~~-~~v~~yD~~t~-----~W~~i~~~p~~R~~~~a~~~~g~IYV~GG~~~~~~~~~v~~yD~ 474 (592)
...+++|... + ..+. ..+.+|+.... +++.+.....+-.-.+++.+++++.+..| +.+.+|++
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g-------~~l~v~~l 114 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVG-------NKLYVYDL 114 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEET-------TEEEEEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeec-------CEEEEEEc
Confidence 4677777631 1 1122 56889999885 66666655555556777788999777666 67889998
Q ss_pred CCCe-EEEeccCCCCCceeEEEEECCEEEEEecCCCCCCCCeEEEEeCCCCeEEEcCCCCCCCcceEEEEE-CCEEEEEe
Q 007704 475 REHY-WTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVV-KEAIYVIG 552 (592)
Q Consensus 475 ~t~~-W~~i~~~p~~R~~~s~v~~~~~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~lp~~R~~~s~~v~-~~~Iyv~G 552 (592)
.... +.....+..+-...++.++++.|++-.-.. .-.++.|+....+-..++.-..++...++..+ ++. .+++
T Consensus 115 ~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~----sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~-~~i~ 189 (321)
T PF03178_consen 115 DNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMK----SVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDED-TIIV 189 (321)
T ss_dssp ETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSS----SEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSS-EEEE
T ss_pred cCcccchhhheecceEEEEEEeccccEEEEEEccc----CEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCc-EEEE
Confidence 8888 888887766667778888888766543322 12355778877778888766667777777777 655 4445
Q ss_pred cc
Q 007704 553 GV 554 (592)
Q Consensus 553 G~ 554 (592)
+-
T Consensus 190 ~D 191 (321)
T PF03178_consen 190 GD 191 (321)
T ss_dssp EE
T ss_pred Ec
Confidence 53
No 77
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=95.07 E-value=1.3 Score=43.03 Aligned_cols=142 Identities=22% Similarity=0.204 Sum_probs=79.5
Q ss_pred EEEEECCEEEEEeeCCCCCCcceEEEEECCCCeE--EEC----CCCCCCCcceEEEEE-C-CEEEEEecCCCCcccceEE
Q 007704 352 SAAMLNGELYIFGGGDGNSWHNTVESYSPANDEW--TSR----PSLNGTKGSLAGATI-D-NKIFAIGGGNGLECFSDVE 423 (592)
Q Consensus 352 s~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W--~~l----~~lp~~r~~~~~~~~-~-~~Iyv~GG~~~~~~~~~v~ 423 (592)
+++...+++|+|-| +.+|+++...... ..+ +.+|. ... ++... + +++|+|-| +..|
T Consensus 11 A~~~~~g~~y~FkG-------~~~w~~~~~~~~~~p~~I~~~w~~~p~-~ID-Aa~~~~~~~~~yfFkg-------~~yw 74 (194)
T cd00094 11 AVTTLRGELYFFKG-------RYFWRLSPGKPPGSPFLISSFWPSLPS-PVD-AAFERPDTGKIYFFKG-------DKYW 74 (194)
T ss_pred eEEEeCCEEEEEeC-------CEEEEEeCCCCCCCCeEhhhhCCCCCC-Ccc-EEEEECCCCEEEEECC-------CEEE
Confidence 44455799999988 5688888652211 122 11221 122 23233 3 89999977 5788
Q ss_pred EEeCCCCeEE---EcccccCc---ccceEEEEE--CCEEEEEeccCCCCCCCeeEEEeCCCCeEEEe---------ccCC
Q 007704 424 MLDLDIGKWI---RTRSMLQK---RFALAAAEL--NGVLYATGGYDGNEYMNSAERFDPREHYWTKI---------ANMN 486 (592)
Q Consensus 424 ~yD~~t~~W~---~i~~~p~~---R~~~~a~~~--~g~IYV~GG~~~~~~~~~v~~yD~~t~~W~~i---------~~~p 486 (592)
+||..+..+. .+.....+ ..--++... ++++|+|.| +..++||...++...- +.+|
T Consensus 75 ~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg-------~~y~ry~~~~~~v~~~yP~~i~~~w~g~p 147 (194)
T cd00094 75 VYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKG-------DKYWRYDEKTQKMDPGYPKLIETDFPGVP 147 (194)
T ss_pred EEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeC-------CEEEEEeCCCccccCCCCcchhhcCCCcC
Confidence 8877642221 11111111 111223333 689999988 5678888765543211 1222
Q ss_pred CCCceeEEEEE-CCEEEEEecCCCCCCCCeEEEEeCCCCe
Q 007704 487 RRRGCHSLAVL-NGKLYALGGFDGSAMVPSIEVYDPRLGS 525 (592)
Q Consensus 487 ~~R~~~s~v~~-~~~Lyv~GG~~~~~~~~~v~~yD~~t~~ 525 (592)
.. ..++... ++++|+|-| +.+++||..+.+
T Consensus 148 ~~--idaa~~~~~~~~yfF~g-------~~y~~~d~~~~~ 178 (194)
T cd00094 148 DK--VDAAFRWLDGYYYFFKG-------DQYWRFDPRSKE 178 (194)
T ss_pred CC--cceeEEeCCCcEEEEEC-------CEEEEEeCccce
Confidence 22 2233334 489999977 468999988765
No 78
>PRK00178 tolB translocation protein TolB; Provisional
Probab=94.88 E-value=6.1 Score=42.98 Aligned_cols=145 Identities=12% Similarity=-0.005 Sum_probs=76.0
Q ss_pred ceEEEEeCCCCeEEEcccccCcccceEEEEECCEEEEEeccCCCCCCCeeEEEeCCCCeEEEeccCCCCCceeEEEEECC
Q 007704 420 SDVEMLDLDIGKWIRTRSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVLNG 499 (592)
Q Consensus 420 ~~v~~yD~~t~~W~~i~~~p~~R~~~~a~~~~g~IYV~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~~s~v~~~~ 499 (592)
..++++|+.+++-+.+...+..-.......-+.+|++....++ ..+++++|+.++.++.+...+..-... ...-++
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g---~~~Iy~~d~~~~~~~~lt~~~~~~~~~-~~spDg 298 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDG---NPEIYVMDLASRQLSRVTNHPAIDTEP-FWGKDG 298 (430)
T ss_pred CEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCC---CceEEEEECCCCCeEEcccCCCCcCCe-EECCCC
Confidence 5799999999887776543321111111111334544332222 258999999999888775432211111 111244
Q ss_pred -EEEEEecCCCCCCCCeEEEEeCCCCeEEEcCCCCCCCcceEEEE-ECC-EEEEEecccCCCccccEEEEEcCC-CcEEE
Q 007704 500 -KLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAV-VKE-AIYVIGGVKNGSEIVDTVERFKEG-QGWEE 575 (592)
Q Consensus 500 -~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~lp~~R~~~s~~v-~~~-~Iyv~GG~~~~~~~~~~v~~Yd~~-~~W~~ 575 (592)
.|++....++ ...++.+|..+..++++... ......... -++ .|+......+ ...++++|+. ..+..
T Consensus 299 ~~i~f~s~~~g---~~~iy~~d~~~g~~~~lt~~--~~~~~~~~~Spdg~~i~~~~~~~~----~~~l~~~dl~tg~~~~ 369 (430)
T PRK00178 299 RTLYFTSDRGG---KPQIYKVNVNGGRAERVTFV--GNYNARPRLSADGKTLVMVHRQDG----NFHVAAQDLQRGSVRI 369 (430)
T ss_pred CEEEEEECCCC---CceEEEEECCCCCEEEeecC--CCCccceEECCCCCEEEEEEccCC----ceEEEEEECCCCCEEE
Confidence 4555432222 34799999988888876421 111111222 234 4444433221 2358888887 66666
Q ss_pred cc
Q 007704 576 IN 577 (592)
Q Consensus 576 v~ 577 (592)
+.
T Consensus 370 lt 371 (430)
T PRK00178 370 LT 371 (430)
T ss_pred cc
Confidence 53
No 79
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=94.78 E-value=4.2 Score=39.31 Aligned_cols=181 Identities=17% Similarity=0.271 Sum_probs=84.2
Q ss_pred CCEEEEEeeCCCCCCcceEEEEECCCCeEEECCCCCCCCcceEEEEE--CCEEEEEecCCCCcccceEEEEeCCCCeEEE
Q 007704 357 NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATI--DNKIFAIGGGNGLECFSDVEMLDLDIGKWIR 434 (592)
Q Consensus 357 ~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~lp~~r~~~~~~~~--~~~Iyv~GG~~~~~~~~~v~~yD~~t~~W~~ 434 (592)
++..+++|+.+ ..+..||..+++.... +.........+.+ ++++++.|+.+ ..+.+||+.+.+-..
T Consensus 62 ~~~~l~~~~~~-----~~i~i~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~~ 129 (289)
T cd00200 62 DGTYLASGSSD-----KTIRLWDLETGECVRT--LTGHTSYVSSVAFSPDGRILSSSSRD-----KTIKVWDVETGKCLT 129 (289)
T ss_pred CCCEEEEEcCC-----CeEEEEEcCcccceEE--EeccCCcEEEEEEcCCCCEEEEecCC-----CeEEEEECCCcEEEE
Confidence 45567777754 4688888887532211 1111111222222 34666666533 468889987554322
Q ss_pred cccccCcccceEEEEEC-CEEEEEeccCCCCCCCeeEEEeCCCCeE-EEeccCCCCCceeEEEEE-CCEEEEEecCCCCC
Q 007704 435 TRSMLQKRFALAAAELN-GVLYATGGYDGNEYMNSAERFDPREHYW-TKIANMNRRRGCHSLAVL-NGKLYALGGFDGSA 511 (592)
Q Consensus 435 i~~~p~~R~~~~a~~~~-g~IYV~GG~~~~~~~~~v~~yD~~t~~W-~~i~~~p~~R~~~s~v~~-~~~Lyv~GG~~~~~ 511 (592)
.-. .....-.++.... +.+++.|+.+ ..+.+||+.+..- ..+.. ......++... ++..+++++.+
T Consensus 130 ~~~-~~~~~i~~~~~~~~~~~l~~~~~~-----~~i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~~--- 198 (289)
T cd00200 130 TLR-GHTDWVNSVAFSPDGTFVASSSQD-----GTIKLWDLRTGKCVATLTG--HTGEVNSVAFSPDGEKLLSSSSD--- 198 (289)
T ss_pred Eec-cCCCcEEEEEEcCcCCEEEEEcCC-----CcEEEEEccccccceeEec--CccccceEEECCCcCEEEEecCC---
Confidence 111 1111122233333 4454444423 3578888875432 22221 11112223333 44456666543
Q ss_pred CCCeEEEEeCCCCeEEEcCCC-CCCCcceEEEEEC-CEEEEEecccCCCccccEEEEEcCC
Q 007704 512 MVPSIEVYDPRLGSWMSGEPM-KLSRGYLGAAVVK-EAIYVIGGVKNGSEIVDTVERFKEG 570 (592)
Q Consensus 512 ~~~~v~~yD~~t~~W~~v~~l-p~~R~~~s~~v~~-~~Iyv~GG~~~~~~~~~~v~~Yd~~ 570 (592)
..+.+||..+..... .+ .......++.... +.+++.|+.+ ..+.+||..
T Consensus 199 --~~i~i~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~------~~i~i~~~~ 249 (289)
T cd00200 199 --GTIKLWDLSTGKCLG--TLRGHENGVNSVAFSPDGYLLASGSED------GTIRVWDLR 249 (289)
T ss_pred --CcEEEEECCCCceec--chhhcCCceEEEEEcCCCcEEEEEcCC------CcEEEEEcC
Confidence 358889987643322 22 1222223333333 4555555423 347777764
No 80
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=94.66 E-value=1.7 Score=46.72 Aligned_cols=184 Identities=14% Similarity=0.170 Sum_probs=101.1
Q ss_pred CCEEEEEeeCCCCCCcceEEEEECCCCeEEECCCCCCCCcceEEEEE--CCE-EEEEecCCCCcccceEEEEeCCCCeEE
Q 007704 357 NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATI--DNK-IFAIGGGNGLECFSDVEMLDLDIGKWI 433 (592)
Q Consensus 357 ~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~lp~~r~~~~~~~~--~~~-Iyv~GG~~~~~~~~~v~~yD~~t~~W~ 433 (592)
.-.+.+.+|.++.. .+|..|-.+|. .+.++...++-...+.+ +|+ ..+++|. ..-++.||..+.+-+
T Consensus 224 ~~plllvaG~d~~l---rifqvDGk~N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~r-----rky~ysyDle~ak~~ 293 (514)
T KOG2055|consen 224 TAPLLLVAGLDGTL---RIFQVDGKVNP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSGR-----RKYLYSYDLETAKVT 293 (514)
T ss_pred CCceEEEecCCCcE---EEEEecCccCh--hheeeeeccCccceeeecCCCceEEEeccc-----ceEEEEeeccccccc
Confidence 56699999988532 35566666655 34344333332222222 555 7777763 346789999999888
Q ss_pred Eccccc---CcccceEEEEECCEEEEEeccCCCCCCCeeEEEeCCCCeEEEeccCCCCCceeEEEEECCEEEEEecCCCC
Q 007704 434 RTRSML---QKRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGS 510 (592)
Q Consensus 434 ~i~~~p---~~R~~~~a~~~~g~IYV~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~~s~v~~~~~Lyv~GG~~~~ 510 (592)
++.++. .+-...-.+...+.++++-|..+ -++.+...++.|..-=.++......+....+..||+.||+
T Consensus 294 k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G-----~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~--- 365 (514)
T KOG2055|consen 294 KLKPPYGVEEKSMERFEVSHDSNFIAIAGNNG-----HIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGT--- 365 (514)
T ss_pred cccCCCCcccchhheeEecCCCCeEEEcccCc-----eEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCC---
Confidence 876542 12222223445666777777553 3556666677664322222222222333335678888885
Q ss_pred CCCCeEEEEeCCCCe----EEEcCCCCCCCcceEEEEECCEEEEEecccCCCccccEEEEEcCC
Q 007704 511 AMVPSIEVYDPRLGS----WMSGEPMKLSRGYLGAAVVKEAIYVIGGVKNGSEIVDTVERFKEG 570 (592)
Q Consensus 511 ~~~~~v~~yD~~t~~----W~~v~~lp~~R~~~s~~v~~~~Iyv~GG~~~~~~~~~~v~~Yd~~ 570 (592)
..||++|+.++. |..-+.. ...+-|...++..+..|. +. .-|-+||.+
T Consensus 366 ---GeV~v~nl~~~~~~~rf~D~G~v---~gts~~~S~ng~ylA~GS-~~-----GiVNIYd~~ 417 (514)
T KOG2055|consen 366 ---GEVYVWNLRQNSCLHRFVDDGSV---HGTSLCISLNGSYLATGS-DS-----GIVNIYDGN 417 (514)
T ss_pred ---ceEEEEecCCcceEEEEeecCcc---ceeeeeecCCCceEEecc-Cc-----ceEEEeccc
Confidence 379999999873 4443322 111222334666444444 32 236677754
No 81
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=94.59 E-value=2.6 Score=42.03 Aligned_cols=178 Identities=19% Similarity=0.183 Sum_probs=94.9
Q ss_pred eEEEEE--CCEEEEEeeCCCCCCcceEEEEECCCCeEEECCCCC-----CCCcceEEEEECCEEEEEecCCCC-ccc--c
Q 007704 351 ASAAML--NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLN-----GTKGSLAGATIDNKIFAIGGGNGL-ECF--S 420 (592)
Q Consensus 351 ~s~v~~--~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~lp-----~~r~~~~~~~~~~~Iyv~GG~~~~-~~~--~ 420 (592)
.+++.. ++.+|+... ..+..+|+.+++++.+...+ ..+..-.++.-+|.||+-.-.... ... .
T Consensus 43 ~G~~~~~~~g~l~v~~~-------~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g 115 (246)
T PF08450_consen 43 NGMAFDRPDGRLYVADS-------GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPG 115 (246)
T ss_dssp EEEEEECTTSEEEEEET-------TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSE
T ss_pred ceEEEEccCCEEEEEEc-------CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCcccccccc
Confidence 334444 688888765 23567799999998875552 222233333347888886432211 111 5
Q ss_pred eEEEEeCCCCeEEEcc-cccCcccceEEEEE--CCEEEEEeccCCCCCCCeeEEEeCCC--CeEEE---eccCCCCC-ce
Q 007704 421 DVEMLDLDIGKWIRTR-SMLQKRFALAAAEL--NGVLYATGGYDGNEYMNSAERFDPRE--HYWTK---IANMNRRR-GC 491 (592)
Q Consensus 421 ~v~~yD~~t~~W~~i~-~~p~~R~~~~a~~~--~g~IYV~GG~~~~~~~~~v~~yD~~t--~~W~~---i~~~p~~R-~~ 491 (592)
.++++++. ++.+.+. .+..+ ...+.. ++.+|+.-- ....+++||+.. ..+.. +...+... .-
T Consensus 116 ~v~~~~~~-~~~~~~~~~~~~p---NGi~~s~dg~~lyv~ds-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~p 186 (246)
T PF08450_consen 116 SVYRIDPD-GKVTVVADGLGFP---NGIAFSPDGKTLYVADS-----FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYP 186 (246)
T ss_dssp EEEEEETT-SEEEEEEEEESSE---EEEEEETTSSEEEEEET-----TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEE
T ss_pred ceEEECCC-CeEEEEecCcccc---cceEECCcchheeeccc-----ccceeEEEeccccccceeeeeeEEEcCCCCcCC
Confidence 79999999 6665543 22222 223333 446887532 235689998863 32432 22233322 22
Q ss_pred eEEEEE-CCEEEEEecCCCCCCCCeEEEEeCCCCeEEEcCCCCCCCcceEEEEE----CCEEEEEe
Q 007704 492 HSLAVL-NGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVV----KEAIYVIG 552 (592)
Q Consensus 492 ~s~v~~-~~~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~lp~~R~~~s~~v~----~~~Iyv~G 552 (592)
-.+++- +|.||+..-. ...|++||++-.....+. +|.+ ..+.+.+ .+.|||.-
T Consensus 187 DG~~vD~~G~l~va~~~-----~~~I~~~~p~G~~~~~i~-~p~~--~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 187 DGLAVDSDGNLWVADWG-----GGRIVVFDPDGKLLREIE-LPVP--RPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEEEBTTS-EEEEEET-----TTEEEEEETTSCEEEEEE--SSS--SEEEEEEESTTSSEEEEEE
T ss_pred CcceEcCCCCEEEEEcC-----CCEEEEECCCccEEEEEc-CCCC--CEEEEEEECCCCCEEEEEe
Confidence 334433 7899997321 247999999955455443 4433 2333343 25677753
No 82
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=94.55 E-value=2.6 Score=45.64 Aligned_cols=173 Identities=17% Similarity=0.194 Sum_probs=92.0
Q ss_pred EECCEEEEEeeCCCCCCcceEEEEECCCCeEEECCCCCCC---CcceEEEEECCEEEEEecCCCCcccceEEEEeCCCC-
Q 007704 355 MLNGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGT---KGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIG- 430 (592)
Q Consensus 355 ~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~lp~~---r~~~~~~~~~~~Iyv~GG~~~~~~~~~v~~yD~~t~- 430 (592)
..++.+++.|+-+. .+..+|..+..- .. .+... ..+.++...++.|++-||+++ .+-.||..+.
T Consensus 120 ~~d~t~l~s~sDd~-----v~k~~d~s~a~v-~~-~l~~htDYVR~g~~~~~~~hivvtGsYDg-----~vrl~DtR~~~ 187 (487)
T KOG0310|consen 120 PQDNTMLVSGSDDK-----VVKYWDLSTAYV-QA-ELSGHTDYVRCGDISPANDHIVVTGSYDG-----KVRLWDTRSLT 187 (487)
T ss_pred ccCCeEEEecCCCc-----eEEEEEcCCcEE-EE-EecCCcceeEeeccccCCCeEEEecCCCc-----eEEEEEeccCC
Confidence 45889999998553 233444444432 11 11111 112233445788999999875 5667888766
Q ss_pred eEEEcccccCcccceEEEEE--CCEEEEEeccCCCCCCCeeEEEeCCCCeEEEeccCC-CCCceeEEEEE-CCEEEEEec
Q 007704 431 KWIRTRSMLQKRFALAAAEL--NGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMN-RRRGCHSLAVL-NGKLYALGG 506 (592)
Q Consensus 431 ~W~~i~~~p~~R~~~~a~~~--~g~IYV~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p-~~R~~~s~v~~-~~~Lyv~GG 506 (592)
.|..--+-..|-.. ++.+ +..|...|| +.+-++|+.++.-. +..+. .-..--|++.. ++.=++.||
T Consensus 188 ~~v~elnhg~pVe~--vl~lpsgs~iasAgG-------n~vkVWDl~~G~ql-l~~~~~H~KtVTcL~l~s~~~rLlS~s 257 (487)
T KOG0310|consen 188 SRVVELNHGCPVES--VLALPSGSLIASAGG-------NSVKVWDLTTGGQL-LTSMFNHNKTVTCLRLASDSTRLLSGS 257 (487)
T ss_pred ceeEEecCCCceee--EEEcCCCCEEEEcCC-------CeEEEEEecCCcee-hhhhhcccceEEEEEeecCCceEeecc
Confidence 44322111111111 2222 345555666 56777777654322 12221 11111222222 445667778
Q ss_pred CCCCCCCCeEEEEeCCCCeEEEcCCCCCCCcceEEEEE-CCEEEEEecccC
Q 007704 507 FDGSAMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVV-KEAIYVIGGVKN 556 (592)
Q Consensus 507 ~~~~~~~~~v~~yD~~t~~W~~v~~lp~~R~~~s~~v~-~~~Iyv~GG~~~ 556 (592)
.|+ .+-+|| +..|+.+..+..|-.-.++++. ++.-.++|+.++
T Consensus 258 LD~-----~VKVfd--~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnG 301 (487)
T KOG0310|consen 258 LDR-----HVKVFD--TTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNG 301 (487)
T ss_pred ccc-----ceEEEE--ccceEEEEeeecccceeeEEecCCCceEEEecccc
Confidence 765 377888 4557777665555555566555 567777787665
No 83
>PRK04922 tolB translocation protein TolB; Provisional
Probab=94.54 E-value=7.6 Score=42.46 Aligned_cols=146 Identities=17% Similarity=0.023 Sum_probs=76.6
Q ss_pred cceEEEEeCCCCeEEEcccccCcccceEEEEECCEEEEEeccCCCCCCCeeEEEeCCCCeEEEeccCCCCCceeEEEEEC
Q 007704 419 FSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVLN 498 (592)
Q Consensus 419 ~~~v~~yD~~t~~W~~i~~~p~~R~~~~a~~~~g~IYV~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~~s~v~~~ 498 (592)
...++++|+.+++.+.+...+..........-+.+|++....++ ..+++++|+.++..+.+.......... ...-+
T Consensus 227 ~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g---~~~Iy~~d~~~g~~~~lt~~~~~~~~~-~~spD 302 (433)
T PRK04922 227 RSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDG---NPEIYVMDLGSRQLTRLTNHFGIDTEP-TWAPD 302 (433)
T ss_pred CcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCC---CceEEEEECCCCCeEECccCCCCccce-EECCC
Confidence 35799999999887776654322111111111345655433322 257999999998877664332111111 11124
Q ss_pred CE-EEEEecCCCCCCCCeEEEEeCCCCeEEEcCCCCCCCcceEEEEE-CC-EEEEEecccCCCccccEEEEEcCC-CcEE
Q 007704 499 GK-LYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVV-KE-AIYVIGGVKNGSEIVDTVERFKEG-QGWE 574 (592)
Q Consensus 499 ~~-Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~lp~~R~~~s~~v~-~~-~Iyv~GG~~~~~~~~~~v~~Yd~~-~~W~ 574 (592)
++ |+......+ ...++.+|..+..++.+..- .......... ++ .|++..+..+ ...++++|+. ..+.
T Consensus 303 G~~l~f~sd~~g---~~~iy~~dl~~g~~~~lt~~--g~~~~~~~~SpDG~~Ia~~~~~~~----~~~I~v~d~~~g~~~ 373 (433)
T PRK04922 303 GKSIYFTSDRGG---RPQIYRVAASGGSAERLTFQ--GNYNARASVSPDGKKIAMVHGSGG----QYRIAVMDLSTGSVR 373 (433)
T ss_pred CCEEEEEECCCC---CceEEEEECCCCCeEEeecC--CCCccCEEECCCCCEEEEEECCCC----ceeEEEEECCCCCeE
Confidence 54 444332222 24799999988888776421 1222222222 34 4544444211 1368888876 6666
Q ss_pred Ecc
Q 007704 575 EIN 577 (592)
Q Consensus 575 ~v~ 577 (592)
.+.
T Consensus 374 ~Lt 376 (433)
T PRK04922 374 TLT 376 (433)
T ss_pred ECC
Confidence 553
No 84
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=94.46 E-value=3.3 Score=41.95 Aligned_cols=183 Identities=15% Similarity=0.198 Sum_probs=105.2
Q ss_pred CCEEEEEeeCCCCCCcceEEEEECCC-----CeEEECCCCCCCCcceEEEEECCEEEEEecCCCCcccceEEEEeCCCCe
Q 007704 357 NGELYIFGGGDGNSWHNTVESYSPAN-----DEWTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIGK 431 (592)
Q Consensus 357 ~~~Iyv~GG~~~~~~~~~v~~yd~~t-----~~W~~l~~lp~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~v~~yD~~t~~ 431 (592)
.+++|++.|..+. .++.|.-.. +.+...-.+|.+-.+.+.++++|.+|---. ..+.+..||+.+++
T Consensus 30 ~~~iy~~~~~~~~----~v~ey~~~~~f~~~~~~~~~~~Lp~~~~GtG~vVYngslYY~~~-----~s~~IvkydL~t~~ 100 (250)
T PF02191_consen 30 SEKIYVTSGFSGN----TVYEYRNYEDFLRNGRSSRTYKLPYPWQGTGHVVYNGSLYYNKY-----NSRNIVKYDLTTRS 100 (250)
T ss_pred CCCEEEECccCCC----EEEEEcCHhHHhhcCCCceEEEEeceeccCCeEEECCcEEEEec-----CCceEEEEECcCCc
Confidence 5789999886653 566664322 223222234555555666777888776532 35789999999886
Q ss_pred EEEcccccCcccc------------eEEEEECCEEEEEeccCCCCCCCeeEEEeCCCC----eEEEeccCCCCCceeEEE
Q 007704 432 WIRTRSMLQKRFA------------LAAAELNGVLYATGGYDGNEYMNSAERFDPREH----YWTKIANMNRRRGCHSLA 495 (592)
Q Consensus 432 W~~i~~~p~~R~~------------~~a~~~~g~IYV~GG~~~~~~~~~v~~yD~~t~----~W~~i~~~p~~R~~~s~v 495 (592)
-..-..+|.+.+. .-.++-++-|+|+-........--+-..|+.+- +|.. ..+.+..+ .+.
T Consensus 101 v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~ivvskld~~tL~v~~tw~T--~~~k~~~~-naF 177 (250)
T PF02191_consen 101 VVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNIVVSKLDPETLSVEQTWNT--SYPKRSAG-NAF 177 (250)
T ss_pred EEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCcEEEEeeCcccCceEEEEEe--ccCchhhc-cee
Confidence 5522223322221 233444566777755444332234556677654 4653 33333333 345
Q ss_pred EECCEEEEEecCCCCCCCCeEEEEeCCCCeEEEcC-CCCCCCcceEEEEE---CCEEEEEe
Q 007704 496 VLNGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGE-PMKLSRGYLGAAVV---KEAIYVIG 552 (592)
Q Consensus 496 ~~~~~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~-~lp~~R~~~s~~v~---~~~Iyv~G 552 (592)
++-|.||++...+... ..-.+.||+.+++=..+. +++.+-..+++... +.+||+.-
T Consensus 178 mvCGvLY~~~s~~~~~-~~I~yafDt~t~~~~~~~i~f~~~~~~~~~l~YNP~dk~LY~wd 237 (250)
T PF02191_consen 178 MVCGVLYATDSYDTRD-TEIFYAFDTYTGKEEDVSIPFPNPYGNISMLSYNPRDKKLYAWD 237 (250)
T ss_pred eEeeEEEEEEECCCCC-cEEEEEEECCCCceeceeeeeccccCceEeeeECCCCCeEEEEE
Confidence 5578899998765433 344689999988766543 33333445555555 46788863
No 85
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=94.30 E-value=9.2 Score=41.14 Aligned_cols=161 Identities=14% Similarity=-0.006 Sum_probs=84.9
Q ss_pred ECCEEEEEecCCCCcccceEEEEeCCCCeEEEcccccCcccceEEEEECCEEEEEeccCCCCCCCeeEEEeCCCCeEEEe
Q 007704 403 IDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHYWTKI 482 (592)
Q Consensus 403 ~~~~Iyv~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~~~a~~~~g~IYV~GG~~~~~~~~~v~~yD~~t~~W~~i 482 (592)
-+++.+++...... ...++++|+.+++...+..........+...-+..|++....++ ..+++.+|+.++..+.+
T Consensus 199 pdg~~la~~~~~~~--~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~---~~~i~~~d~~~~~~~~l 273 (417)
T TIGR02800 199 PDGQKLAYVSFESG--KPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDG---NPDIYVMDLDGKQLTRL 273 (417)
T ss_pred CCCCEEEEEEcCCC--CcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCC---CccEEEEECCCCCEEEC
Confidence 35555555443221 26799999998877665544332222221111335655443222 25789999998887777
Q ss_pred ccCCCCCceeEEEEECCE-EEEEecCCCCCCCCeEEEEeCCCCeEEEcCCCCCCCcceEEEE-ECCEEEEEecccCCCcc
Q 007704 483 ANMNRRRGCHSLAVLNGK-LYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAV-VKEAIYVIGGVKNGSEI 560 (592)
Q Consensus 483 ~~~p~~R~~~s~v~~~~~-Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~lp~~R~~~s~~v-~~~~Iyv~GG~~~~~~~ 560 (592)
.......... ...-+++ |++.....+ ...++.+|..+..++.+..- ......... -+++.++++.....
T Consensus 274 ~~~~~~~~~~-~~s~dg~~l~~~s~~~g---~~~iy~~d~~~~~~~~l~~~--~~~~~~~~~spdg~~i~~~~~~~~--- 344 (417)
T TIGR02800 274 TNGPGIDTEP-SWSPDGKSIAFTSDRGG---SPQIYMMDADGGEVRRLTFR--GGYNASPSWSPDGDLIAFVHREGG--- 344 (417)
T ss_pred CCCCCCCCCE-EECCCCCEEEEEECCCC---CceEEEEECCCCCEEEeecC--CCCccCeEECCCCCEEEEEEccCC---
Confidence 5432211111 1112444 444433222 24799999988888776422 112222222 25555555554321
Q ss_pred ccEEEEEcCC-CcEEEcc
Q 007704 561 VDTVERFKEG-QGWEEIN 577 (592)
Q Consensus 561 ~~~v~~Yd~~-~~W~~v~ 577 (592)
...++.+|+. ..+..+.
T Consensus 345 ~~~i~~~d~~~~~~~~l~ 362 (417)
T TIGR02800 345 GFNIAVMDLDGGGERVLT 362 (417)
T ss_pred ceEEEEEeCCCCCeEEcc
Confidence 2468999987 5565554
No 86
>PRK05137 tolB translocation protein TolB; Provisional
Probab=94.16 E-value=11 Score=41.34 Aligned_cols=150 Identities=9% Similarity=-0.052 Sum_probs=77.2
Q ss_pred cceEEEEECCCCeEEECCCCCCCCcceEEEEECCEEEEEecCCCCcccceEEEEeCCCCeEEEcccccCcccceEEEEEC
Q 007704 372 HNTVESYSPANDEWTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELN 451 (592)
Q Consensus 372 ~~~v~~yd~~t~~W~~l~~lp~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~~~a~~~~ 451 (592)
...+|..|.....-+.+..-..+ ......+-+++-+++...... ...++++|+.+++.+.+...+..-...+...-+
T Consensus 181 ~~~l~~~d~dg~~~~~lt~~~~~-v~~p~wSpDG~~lay~s~~~g--~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG 257 (435)
T PRK05137 181 IKRLAIMDQDGANVRYLTDGSSL-VLTPRFSPNRQEITYMSYANG--RPRVYLLDLETGQRELVGNFPGMTFAPRFSPDG 257 (435)
T ss_pred ceEEEEECCCCCCcEEEecCCCC-eEeeEECCCCCEEEEEEecCC--CCEEEEEECCCCcEEEeecCCCcccCcEECCCC
Confidence 46788888765443333221111 111122235554444332211 268999999999887776544322222221123
Q ss_pred CEEEEEeccCCCCCCCeeEEEeCCCCeEEEeccCCCCCceeEEEEECCEEEEEecCCCCCCCCeEEEEeCCCCeEEEcC
Q 007704 452 GVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGE 530 (592)
Q Consensus 452 g~IYV~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~~s~v~~~~~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~ 530 (592)
.+|++....++ ..+++++|+.++...++...+.... .....-+++-++|..... -...++++|......+.+.
T Consensus 258 ~~la~~~~~~g---~~~Iy~~d~~~~~~~~Lt~~~~~~~-~~~~spDG~~i~f~s~~~--g~~~Iy~~d~~g~~~~~lt 330 (435)
T PRK05137 258 RKVVMSLSQGG---NTDIYTMDLRSGTTTRLTDSPAIDT-SPSYSPDGSQIVFESDRS--GSPQLYVMNADGSNPRRIS 330 (435)
T ss_pred CEEEEEEecCC---CceEEEEECCCCceEEccCCCCccC-ceeEcCCCCEEEEEECCC--CCCeEEEEECCCCCeEEee
Confidence 35554433322 3679999999988777754332111 111122444333432111 1257999998887777764
No 87
>PTZ00421 coronin; Provisional
Probab=94.11 E-value=12 Score=41.83 Aligned_cols=193 Identities=17% Similarity=0.193 Sum_probs=91.3
Q ss_pred CCEEEEEeeCCCCCCcceEEEEECCCCeEE-----ECCCCCCCCcceEEEEE---CCEEEEEecCCCCcccceEEEEeCC
Q 007704 357 NGELYIFGGGDGNSWHNTVESYSPANDEWT-----SRPSLNGTKGSLAGATI---DNKIFAIGGGNGLECFSDVEMLDLD 428 (592)
Q Consensus 357 ~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~-----~l~~lp~~r~~~~~~~~---~~~Iyv~GG~~~~~~~~~v~~yD~~ 428 (592)
++.+++.|+.++ .+.+||..+.... .+..+......-..+.+ ++.+++.||.+ ..+.+||+.
T Consensus 87 d~~~LaSgS~Dg-----tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~D-----gtVrIWDl~ 156 (493)
T PTZ00421 87 DPQKLFTASEDG-----TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGAD-----MVVNVWDVE 156 (493)
T ss_pred CCCEEEEEeCCC-----EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCC-----CEEEEEECC
Confidence 456777787663 5677887654321 11111111111122233 24577777755 467889988
Q ss_pred CCeEEEcccccC-cccceEEEE-ECCEEEEEeccCCCCCCCeeEEEeCCCCeEE-EeccCCCCCceeEEEEECCEEEEEe
Q 007704 429 IGKWIRTRSMLQ-KRFALAAAE-LNGVLYATGGYDGNEYMNSAERFDPREHYWT-KIANMNRRRGCHSLAVLNGKLYALG 505 (592)
Q Consensus 429 t~~W~~i~~~p~-~R~~~~a~~-~~g~IYV~GG~~~~~~~~~v~~yD~~t~~W~-~i~~~p~~R~~~s~v~~~~~Lyv~G 505 (592)
+++-.. .+.. ...-.+++. .++.+++.|+.+ ..+.+||++++.-. .+..-...+....+...++..++..
T Consensus 157 tg~~~~--~l~~h~~~V~sla~spdG~lLatgs~D-----g~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~ 229 (493)
T PTZ00421 157 RGKAVE--VIKCHSDQITSLEWNLDGSLLCTTSKD-----KKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITL 229 (493)
T ss_pred CCeEEE--EEcCCCCceEEEEEECCCCEEEEecCC-----CEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEE
Confidence 765322 1111 111112222 267777888765 45788999876522 2221111111111111233344444
Q ss_pred cCCCCCCCCeEEEEeCCCCe--EEEcCCCCCCCcceEEEEE--CCEEEEEecccCCCccccEEEEEcCC-CcEE
Q 007704 506 GFDGSAMVPSIEVYDPRLGS--WMSGEPMKLSRGYLGAAVV--KEAIYVIGGVKNGSEIVDTVERFKEG-QGWE 574 (592)
Q Consensus 506 G~~~~~~~~~v~~yD~~t~~--W~~v~~lp~~R~~~s~~v~--~~~Iyv~GG~~~~~~~~~~v~~Yd~~-~~W~ 574 (592)
|.+.. .-..+.+||+.+.. .... ..... ....+..+ ++.++++||..+ ..|.+||.. ....
T Consensus 230 G~s~s-~Dr~VklWDlr~~~~p~~~~-~~d~~-~~~~~~~~d~d~~~L~lggkgD-----g~Iriwdl~~~~~~ 295 (493)
T PTZ00421 230 GCSKS-QQRQIMLWDTRKMASPYSTV-DLDQS-SALFIPFFDEDTNLLYIGSKGE-----GNIRCFELMNERLT 295 (493)
T ss_pred ecCCC-CCCeEEEEeCCCCCCceeEe-ccCCC-CceEEEEEcCCCCEEEEEEeCC-----CeEEEEEeeCCceE
Confidence 54321 12468889986532 1111 11111 11222233 455666676433 458888876 5443
No 88
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=93.96 E-value=3 Score=40.36 Aligned_cols=143 Identities=18% Similarity=0.100 Sum_probs=75.9
Q ss_pred EEEEECCEEEEEecCCCCcccceEEEEeCCCCe--EEEcccc-c-CcccceEEEEE--CCEEEEEeccCCCCCCCeeEEE
Q 007704 399 AGATIDNKIFAIGGGNGLECFSDVEMLDLDIGK--WIRTRSM-L-QKRFALAAAEL--NGVLYATGGYDGNEYMNSAERF 472 (592)
Q Consensus 399 ~~~~~~~~Iyv~GG~~~~~~~~~v~~yD~~t~~--W~~i~~~-p-~~R~~~~a~~~--~g~IYV~GG~~~~~~~~~v~~y 472 (592)
++....+++|+|-| ..+|.++..... -..+... | .+..--++... ++++|+|-| +..|+|
T Consensus 11 A~~~~~g~~y~FkG-------~~~w~~~~~~~~~~p~~I~~~w~~~p~~IDAa~~~~~~~~~yfFkg-------~~yw~~ 76 (194)
T cd00094 11 AVTTLRGELYFFKG-------RYFWRLSPGKPPGSPFLISSFWPSLPSPVDAAFERPDTGKIYFFKG-------DKYWVY 76 (194)
T ss_pred eEEEeCCEEEEEeC-------CEEEEEeCCCCCCCCeEhhhhCCCCCCCccEEEEECCCCEEEEECC-------CEEEEE
Confidence 34445699999977 467777765211 1222111 1 11122223333 389999977 467888
Q ss_pred eCCCCeEE---Eec--cCCC-CCceeEEEEE--CCEEEEEecCCCCCCCCeEEEEeCCCCeEEE-----cCC-C-CCCCc
Q 007704 473 DPREHYWT---KIA--NMNR-RRGCHSLAVL--NGKLYALGGFDGSAMVPSIEVYDPRLGSWMS-----GEP-M-KLSRG 537 (592)
Q Consensus 473 D~~t~~W~---~i~--~~p~-~R~~~s~v~~--~~~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~-----v~~-l-p~~R~ 537 (592)
|..+..+. .+. ..+. +..--++... ++++|+|-| +..|+||...++... +.. . ..+..
T Consensus 77 ~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg-------~~y~ry~~~~~~v~~~yP~~i~~~w~g~p~~ 149 (194)
T cd00094 77 TGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKG-------DKYWRYDEKTQKMDPGYPKLIETDFPGVPDK 149 (194)
T ss_pred cCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeC-------CEEEEEeCCCccccCCCCcchhhcCCCcCCC
Confidence 76642221 111 1111 1111233333 689999987 468889876654321 110 1 11221
Q ss_pred ceEEEEE-CCEEEEEecccCCCccccEEEEEcCC
Q 007704 538 YLGAAVV-KEAIYVIGGVKNGSEIVDTVERFKEG 570 (592)
Q Consensus 538 ~~s~~v~-~~~Iyv~GG~~~~~~~~~~v~~Yd~~ 570 (592)
--++... ++++|+|-| +.+|+||..
T Consensus 150 idaa~~~~~~~~yfF~g--------~~y~~~d~~ 175 (194)
T cd00094 150 VDAAFRWLDGYYYFFKG--------DQYWRFDPR 175 (194)
T ss_pred cceeEEeCCCcEEEEEC--------CEEEEEeCc
Confidence 2223333 489999988 569999986
No 89
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=93.86 E-value=13 Score=41.38 Aligned_cols=120 Identities=16% Similarity=0.235 Sum_probs=66.5
Q ss_pred ceEEEEECCEEEEEeeCCCCCCcceEEEEECCCCe--EEECCCCCCCC-----cceEEEEEC-CEEEEEecCCCCcccce
Q 007704 350 YASAAMLNGELYIFGGGDGNSWHNTVESYSPANDE--WTSRPSLNGTK-----GSLAGATID-NKIFAIGGGNGLECFSD 421 (592)
Q Consensus 350 ~~s~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~--W~~l~~lp~~r-----~~~~~~~~~-~~Iyv~GG~~~~~~~~~ 421 (592)
..+.++.++.||+.... ..++.+|..+.+ |+.-...+..+ .....+..+ ++||+... ...
T Consensus 54 ~~sPvv~~g~vy~~~~~------g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~------~g~ 121 (488)
T cd00216 54 EGTPLVVDGDMYFTTSH------SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF------DGR 121 (488)
T ss_pred ccCCEEECCEEEEeCCC------CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC------CCe
Confidence 34456779999986542 468999988764 86532222111 111223445 78876432 247
Q ss_pred EEEEeCCCCe--EEEcccccC-cc--cceEEEEECCEEEEEeccCCC----CCCCeeEEEeCCCCe--EEEe
Q 007704 422 VEMLDLDIGK--WIRTRSMLQ-KR--FALAAAELNGVLYATGGYDGN----EYMNSAERFDPREHY--WTKI 482 (592)
Q Consensus 422 v~~yD~~t~~--W~~i~~~p~-~R--~~~~a~~~~g~IYV~GG~~~~----~~~~~v~~yD~~t~~--W~~i 482 (592)
++.+|..|++ |+.-..... .. ...+.++.++.+|+ |..+.. .....++.+|..+++ |+.-
T Consensus 122 v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~v-g~~~~~~~~~~~~g~v~alD~~TG~~~W~~~ 192 (488)
T cd00216 122 LVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVII-GSSGAEFFACGVRGALRAYDVETGKLLWRFY 192 (488)
T ss_pred EEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEE-eccccccccCCCCcEEEEEECCCCceeeEee
Confidence 8889988764 765322111 11 12233455676665 322211 123578999998765 8753
No 90
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=93.34 E-value=3.5 Score=43.02 Aligned_cols=149 Identities=14% Similarity=0.127 Sum_probs=87.0
Q ss_pred ceEEEEeCCCCeEEEcc--cccCcccceEEEEE--C------CEEEEEec-cCCCC---CC-CeeEEEeCCCC-----eE
Q 007704 420 SDVEMLDLDIGKWIRTR--SMLQKRFALAAAEL--N------GVLYATGG-YDGNE---YM-NSAERFDPREH-----YW 479 (592)
Q Consensus 420 ~~v~~yD~~t~~W~~i~--~~p~~R~~~~a~~~--~------g~IYV~GG-~~~~~---~~-~~v~~yD~~t~-----~W 479 (592)
+.+.++|+.+.+ .+. .++..-...+++.+ . ..++++|- +.... .. ..+.+|+..+. .+
T Consensus 2 s~i~l~d~~~~~--~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l 79 (321)
T PF03178_consen 2 SSIRLVDPTTFE--VLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKL 79 (321)
T ss_dssp -EEEEEETTTSS--EEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EE
T ss_pred cEEEEEeCCCCe--EEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEE
Confidence 356777776544 333 23322223333332 2 35666663 22221 12 56889998885 56
Q ss_pred EEeccCCCCCceeEEEEECCEEEEEecCCCCCCCCeEEEEeCCCCe-EEEcCCCCCCCcceEEEEECCEEEEEecccCCC
Q 007704 480 TKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGS-WMSGEPMKLSRGYLGAAVVKEAIYVIGGVKNGS 558 (592)
Q Consensus 480 ~~i~~~p~~R~~~s~v~~~~~Lyv~GG~~~~~~~~~v~~yD~~t~~-W~~v~~lp~~R~~~s~~v~~~~Iyv~GG~~~~~ 558 (592)
+.+........-.+++.++++|++.-| +.+.+|+..... |...+.+..+-...++.+.++.|++ |-...+
T Consensus 80 ~~i~~~~~~g~V~ai~~~~~~lv~~~g-------~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~v-gD~~~s- 150 (321)
T PF03178_consen 80 KLIHSTEVKGPVTAICSFNGRLVVAVG-------NKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILV-GDAMKS- 150 (321)
T ss_dssp EEEEEEEESS-EEEEEEETTEEEEEET-------TEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEE-EESSSS-
T ss_pred EEEEEEeecCcceEhhhhCCEEEEeec-------CEEEEEEccCcccchhhheecceEEEEEEeccccEEEE-EEcccC-
Confidence 666555445556778888999776655 468888888877 8888876666666777788886665 544333
Q ss_pred ccccEEEEEcCC-CcEEEccccCCC
Q 007704 559 EIVDTVERFKEG-QGWEEINSRAIG 582 (592)
Q Consensus 559 ~~~~~v~~Yd~~-~~W~~v~~~p~~ 582 (592)
-.+..|+.+ .+-..++.-+.+
T Consensus 151 ---v~~~~~~~~~~~l~~va~d~~~ 172 (321)
T PF03178_consen 151 ---VSLLRYDEENNKLILVARDYQP 172 (321)
T ss_dssp ---EEEEEEETTTE-EEEEEEESS-
T ss_pred ---EEEEEEEccCCEEEEEEecCCC
Confidence 445567776 556666654444
No 91
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=93.18 E-value=1.1 Score=48.10 Aligned_cols=151 Identities=14% Similarity=0.176 Sum_probs=86.6
Q ss_pred CCEEEEEecCCCCcccceEEEEeCCCCeEEEcccccCcccceEEEE--ECCE-EEEEeccCCCCCCCeeEEEeCCCCeEE
Q 007704 404 DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAE--LNGV-LYATGGYDGNEYMNSAERFDPREHYWT 480 (592)
Q Consensus 404 ~~~Iyv~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~~~a~~--~~g~-IYV~GG~~~~~~~~~v~~yD~~t~~W~ 480 (592)
.-.+.+++|.++. -.++..|-+++. .+.++...++--..+. -+|. ..+++|.. .-++.||+.+..-+
T Consensus 224 ~~plllvaG~d~~---lrifqvDGk~N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rr-----ky~ysyDle~ak~~ 293 (514)
T KOG2055|consen 224 TAPLLLVAGLDGT---LRIFQVDGKVNP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRR-----KYLYSYDLETAKVT 293 (514)
T ss_pred CCceEEEecCCCc---EEEEEecCccCh--hheeeeeccCccceeeecCCCceEEEecccc-----eEEEEeeccccccc
Confidence 4568888887643 244445555554 4444443332222222 2555 66777643 45789999999988
Q ss_pred EeccC---CCCCceeEEEEECCEEEEEecCCCCCCCCeEEEEeCCCCeEEEcCCCCCCCcceEEEEECCEEEEEecccCC
Q 007704 481 KIANM---NRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVVKEAIYVIGGVKNG 557 (592)
Q Consensus 481 ~i~~~---p~~R~~~s~v~~~~~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~lp~~R~~~s~~v~~~~Iyv~GG~~~~ 557 (592)
++.++ +..-....-|..++.++++-|..+ -|..+...++.|..--.++-.-..++...-+..||+.||+
T Consensus 294 k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G-----~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~--- 365 (514)
T KOG2055|consen 294 KLKPPYGVEEKSMERFEVSHDSNFIAIAGNNG-----HIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGT--- 365 (514)
T ss_pred cccCCCCcccchhheeEecCCCCeEEEcccCc-----eEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCC---
Confidence 88654 222333445666777777777544 4667777777775432232222222222223567777776
Q ss_pred CccccEEEEEcCC-----CcEEEc
Q 007704 558 SEIVDTVERFKEG-----QGWEEI 576 (592)
Q Consensus 558 ~~~~~~v~~Yd~~-----~~W~~v 576 (592)
..||+||+. .+|..=
T Consensus 366 ----GeV~v~nl~~~~~~~rf~D~ 385 (514)
T KOG2055|consen 366 ----GEVYVWNLRQNSCLHRFVDD 385 (514)
T ss_pred ----ceEEEEecCCcceEEEEeec
Confidence 349999976 356553
No 92
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=93.04 E-value=12 Score=38.41 Aligned_cols=193 Identities=18% Similarity=0.264 Sum_probs=97.3
Q ss_pred CCCccCcceEEEEECCEEEEEeeCCCCCCcceEEEEECCCCeEE----ECCCCCCCCcceEEEEE-CCEEEEEecCCCCc
Q 007704 343 PMSSARSYASAAMLNGELYIFGGGDGNSWHNTVESYSPANDEWT----SRPSLNGTKGSLAGATI-DNKIFAIGGGNGLE 417 (592)
Q Consensus 343 p~p~~R~~~s~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~----~l~~lp~~r~~~~~~~~-~~~Iyv~GG~~~~~ 417 (592)
|+|+.=.-.++..-.+.....||.+ |.+-+|+..+..=. ....++....+.++|.+ ++.-++.|..+
T Consensus 94 pl~s~WVMtCA~sPSg~~VAcGGLd-----N~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD--- 165 (343)
T KOG0286|consen 94 PLPSSWVMTCAYSPSGNFVACGGLD-----NKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGD--- 165 (343)
T ss_pred ecCceeEEEEEECCCCCeEEecCcC-----ceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCC---
Confidence 5544333333333478888889977 56678887754222 11234555666666655 44444444333
Q ss_pred ccceEEEEeCCCCeEEEcccccCcccceEEEE-------ECCEEEEEeccCCCCCCCeeEEEeCCCCeEEEeccCCCCCc
Q 007704 418 CFSDVEMLDLDIGKWIRTRSMLQKRFALAAAE-------LNGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRG 490 (592)
Q Consensus 418 ~~~~v~~yD~~t~~W~~i~~~p~~R~~~~a~~-------~~g~IYV~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~ 490 (592)
.+.-.+|+++++-... -.+|++-+ .+++.||.||.+.. ...+|.+...-.+. .+.--+
T Consensus 166 --~TCalWDie~g~~~~~------f~GH~gDV~slsl~p~~~ntFvSg~cD~~-----aklWD~R~~~c~qt--F~ghes 230 (343)
T KOG0286|consen 166 --MTCALWDIETGQQTQV------FHGHTGDVMSLSLSPSDGNTFVSGGCDKS-----AKLWDVRSGQCVQT--FEGHES 230 (343)
T ss_pred --ceEEEEEcccceEEEE------ecCCcccEEEEecCCCCCCeEEecccccc-----eeeeeccCcceeEe--eccccc
Confidence 4667788888754332 11232221 27789999997743 35566665533221 110000
Q ss_pred -eeEEEEE-CCEEEEEecCCCCCCCCeEEEEeCCCCeEEEcCCCCCCCcceEEE--EECCEEEEEecccCCCccccEEEE
Q 007704 491 -CHSLAVL-NGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAA--VVKEAIYVIGGVKNGSEIVDTVER 566 (592)
Q Consensus 491 -~~s~v~~-~~~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~lp~~R~~~s~~--v~~~~Iyv~GG~~~~~~~~~~v~~ 566 (592)
-.++..+ +|.-|+.|--+ ...-.||++.++=..+=..+..-.+...+ ...++++..|..+ ..+.+
T Consensus 231 DINsv~ffP~G~afatGSDD-----~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d------~~c~v 299 (343)
T KOG0286|consen 231 DINSVRFFPSGDAFATGSDD-----ATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDD------FTCNV 299 (343)
T ss_pred ccceEEEccCCCeeeecCCC-----ceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecC------CceeE
Confidence 1122222 55556665433 24567888776432221111112222222 2357776666433 33666
Q ss_pred EcC
Q 007704 567 FKE 569 (592)
Q Consensus 567 Yd~ 569 (592)
||.
T Consensus 300 WDt 302 (343)
T KOG0286|consen 300 WDT 302 (343)
T ss_pred eec
Confidence 663
No 93
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=93.03 E-value=6.9 Score=39.14 Aligned_cols=138 Identities=15% Similarity=0.089 Sum_probs=68.7
Q ss_pred EEEEEecCCCCcccceEEEEeCCCCeEEEcccccCcccceEEEEE-C-CEEEEEeccCCCCCCCeeEEEeCCCCeEEEe-
Q 007704 406 KIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAEL-N-GVLYATGGYDGNEYMNSAERFDPREHYWTKI- 482 (592)
Q Consensus 406 ~Iyv~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~~~a~~~-~-g~IYV~GG~~~~~~~~~v~~yD~~t~~W~~i- 482 (592)
.+|+.++.+ ..+.+||+.+++-...-.... +. ..++.. + ..+|+.++.+ +.+.+||+.++.....
T Consensus 2 ~~~~s~~~d-----~~v~~~d~~t~~~~~~~~~~~-~~-~~l~~~~dg~~l~~~~~~~-----~~v~~~d~~~~~~~~~~ 69 (300)
T TIGR03866 2 KAYVSNEKD-----NTISVIDTATLEVTRTFPVGQ-RP-RGITLSKDGKLLYVCASDS-----DTIQVIDLATGEVIGTL 69 (300)
T ss_pred cEEEEecCC-----CEEEEEECCCCceEEEEECCC-CC-CceEECCCCCEEEEEECCC-----CeEEEEECCCCcEEEec
Confidence 467776644 478889988775433211111 11 112222 3 4577776533 4688999988776442
Q ss_pred ccCCCCCceeEEEEE-C-CEEEEEecCCCCCCCCeEEEEeCCCCeEEEcCCCCCCCcceEEEEE-CCEEEEEecccCCCc
Q 007704 483 ANMNRRRGCHSLAVL-N-GKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVV-KEAIYVIGGVKNGSE 559 (592)
Q Consensus 483 ~~~p~~R~~~s~v~~-~-~~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~lp~~R~~~s~~v~-~~~Iyv~GG~~~~~~ 559 (592)
+....+ ..++.. + +.+|+.++.+ ..+.+||+.+..-. ..++......+++.. ++.+++++...+
T Consensus 70 ~~~~~~---~~~~~~~~g~~l~~~~~~~-----~~l~~~d~~~~~~~--~~~~~~~~~~~~~~~~dg~~l~~~~~~~--- 136 (300)
T TIGR03866 70 PSGPDP---ELFALHPNGKILYIANEDD-----NLVTVIDIETRKVL--AEIPVGVEPEGMAVSPDGKIVVNTSETT--- 136 (300)
T ss_pred cCCCCc---cEEEECCCCCEEEEEcCCC-----CeEEEEECCCCeEE--eEeeCCCCcceEEECCCCCEEEEEecCC---
Confidence 221122 222222 3 4566665432 36889998875422 212211112233332 566666655432
Q ss_pred cccEEEEEcCC
Q 007704 560 IVDTVERFKEG 570 (592)
Q Consensus 560 ~~~~v~~Yd~~ 570 (592)
+.+..||..
T Consensus 137 --~~~~~~d~~ 145 (300)
T TIGR03866 137 --NMAHFIDTK 145 (300)
T ss_pred --CeEEEEeCC
Confidence 235556654
No 94
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=92.88 E-value=8 Score=39.86 Aligned_cols=160 Identities=16% Similarity=0.173 Sum_probs=91.4
Q ss_pred CcceEEEEECCEEEEEeeCCC-----------------CCCcceEEEEECCCCeEEEC--CCCCCCCcceEEE------E
Q 007704 348 RSYASAAMLNGELYIFGGGDG-----------------NSWHNTVESYSPANDEWTSR--PSLNGTKGSLAGA------T 402 (592)
Q Consensus 348 R~~~s~v~~~~~Iyv~GG~~~-----------------~~~~~~v~~yd~~t~~W~~l--~~lp~~r~~~~~~------~ 402 (592)
-.+.++.++++.|| ||||-. ..-++.+..||..+++-+.+ .+...++....=+ -
T Consensus 37 DTYNAV~~vDd~Iy-FGGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e~~~VrLLWkesih~~~~WaGEVSdIlYdP 115 (339)
T PF09910_consen 37 DTYNAVEWVDDFIY-FGGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTENDSVRLLWKESIHDKTKWAGEVSDILYDP 115 (339)
T ss_pred ccceeeeeecceEE-EeeeecCCceeeeccCCceEEEEeeccceEEEEEcCCCeEEEEEecccCCccccccchhheeeCC
Confidence 33455556676666 688320 22367899999998864333 1233333332222 1
Q ss_pred ECCEEEEEecCCCCcccceEEEEeCCCCeEEEcccccCcccceEEEEECCEEEEEeccCCCCCCCeeEEEeCCCCeE--E
Q 007704 403 IDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHYW--T 480 (592)
Q Consensus 403 ~~~~Iyv~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~~~a~~~~g~IYV~GG~~~~~~~~~v~~yD~~t~~W--~ 480 (592)
+++++++.-+ ++ ...--+|..|..++.-+.+..-|..+ .+.+.+..+|-+ .+.....+.+.+||+.+++| +
T Consensus 116 ~~D~LLlAR~-DG-h~nLGvy~ldr~~g~~~~L~~~ps~K---G~~~~D~a~F~i--~~~~~g~~~i~~~Dli~~~~~~e 188 (339)
T PF09910_consen 116 YEDRLLLARA-DG-HANLGVYSLDRRTGKAEKLSSNPSLK---GTLVHDYACFGI--NNFHKGVSGIHCLDLISGKWVIE 188 (339)
T ss_pred CcCEEEEEec-CC-cceeeeEEEcccCCceeeccCCCCcC---ceEeeeeEEEec--cccccCCceEEEEEccCCeEEEE
Confidence 2677877644 22 11235788888899888877666553 222333333433 33445678999999999999 4
Q ss_pred EeccCC-------CCCceeEEEEECCEEEEEecCCCCCCCCeEEEEeCC
Q 007704 481 KIANMN-------RRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPR 522 (592)
Q Consensus 481 ~i~~~p-------~~R~~~s~v~~~~~Lyv~GG~~~~~~~~~v~~yD~~ 522 (592)
..+... ..|..-.++...+++|.|=+ ..+.+.||.
T Consensus 189 ~f~~~~s~Dg~~~~~~~~G~~~s~ynR~faF~r-------GGi~vgnP~ 230 (339)
T PF09910_consen 189 SFDVSLSVDGGPVIRPELGAMASAYNRLFAFVR-------GGIFVGNPY 230 (339)
T ss_pred ecccccCCCCCceEeeccccEEEEeeeEEEEEe-------ccEEEeCCC
Confidence 442111 12344456677788777622 125666665
No 95
>PLN00181 protein SPA1-RELATED; Provisional
Probab=92.51 E-value=11 Score=44.58 Aligned_cols=142 Identities=13% Similarity=0.171 Sum_probs=69.6
Q ss_pred CCEEEEEecCCCCcccceEEEEeCCCCeEEEcccccCcccceEEEE--ECCEEEEEeccCCCCCCCeeEEEeCCCCe--E
Q 007704 404 DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAE--LNGVLYATGGYDGNEYMNSAERFDPREHY--W 479 (592)
Q Consensus 404 ~~~Iyv~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~~~a~~--~~g~IYV~GG~~~~~~~~~v~~yD~~t~~--W 479 (592)
++.+++.||.+ ..+.+||..++.-. ..+.....-.++.. -++.++++|+.+ ..+.+||+.+.. .
T Consensus 587 ~~~~L~Sgs~D-----g~v~iWd~~~~~~~--~~~~~~~~v~~v~~~~~~g~~latgs~d-----g~I~iwD~~~~~~~~ 654 (793)
T PLN00181 587 DPTLLASGSDD-----GSVKLWSINQGVSI--GTIKTKANICCVQFPSESGRSLAFGSAD-----HKVYYYDLRNPKLPL 654 (793)
T ss_pred CCCEEEEEcCC-----CEEEEEECCCCcEE--EEEecCCCeEEEEEeCCCCCEEEEEeCC-----CeEEEEECCCCCccc
Confidence 56788888755 35788888765322 11111111111211 246778888765 468899987642 2
Q ss_pred EEeccCCCCCceeEEEEECCEEEEEecCCCCCCCCeEEEEeCCCC----eEEEcCCCCCCCc--ceEEEEECCEEEEEec
Q 007704 480 TKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLG----SWMSGEPMKLSRG--YLGAAVVKEAIYVIGG 553 (592)
Q Consensus 480 ~~i~~~p~~R~~~s~v~~~~~Lyv~GG~~~~~~~~~v~~yD~~t~----~W~~v~~lp~~R~--~~s~~v~~~~Iyv~GG 553 (592)
..+.. ....-..+...++..++.|+.++ .+.+||.... .|..+..+..... .......++.+++.|+
T Consensus 655 ~~~~~--h~~~V~~v~f~~~~~lvs~s~D~-----~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs 727 (793)
T PLN00181 655 CTMIG--HSKTVSYVRFVDSSTLVSSSTDN-----TLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGS 727 (793)
T ss_pred eEecC--CCCCEEEEEEeCCCEEEEEECCC-----EEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEe
Confidence 22211 11111222233666777777653 4777887643 2332222111111 1111222456667777
Q ss_pred ccCCCccccEEEEEcCC
Q 007704 554 VKNGSEIVDTVERFKEG 570 (592)
Q Consensus 554 ~~~~~~~~~~v~~Yd~~ 570 (592)
.+ ..|.+|+..
T Consensus 728 ~D------~~v~iw~~~ 738 (793)
T PLN00181 728 ET------NEVFVYHKA 738 (793)
T ss_pred CC------CEEEEEECC
Confidence 54 347777753
No 96
>PRK03629 tolB translocation protein TolB; Provisional
Probab=92.40 E-value=20 Score=39.28 Aligned_cols=192 Identities=9% Similarity=-0.084 Sum_probs=94.3
Q ss_pred CcceEEEEECCCCeEEECCCCCCCCcceEEEEECCEEEEEecCCCCcccceEEEEeCCCCeEEEcccccCcccceEEEEE
Q 007704 371 WHNTVESYSPANDEWTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAEL 450 (592)
Q Consensus 371 ~~~~v~~yd~~t~~W~~l~~lp~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~~~a~~~ 450 (592)
....+|..|.....=+.+..-+. .......+-+|+.+++-.... ....++++|+.+++-+.+...+..-.......-
T Consensus 177 ~~~~l~~~d~dg~~~~~lt~~~~-~~~~p~wSPDG~~la~~s~~~--g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPD 253 (429)
T PRK03629 177 FPYELRVSDYDGYNQFVVHRSPQ-PLMSPAWSPDGSKLAYVTFES--GRSALVIQTLANGAVRQVASFPRHNGAPAFSPD 253 (429)
T ss_pred cceeEEEEcCCCCCCEEeecCCC-ceeeeEEcCCCCEEEEEEecC--CCcEEEEEECCCCCeEEccCCCCCcCCeEECCC
Confidence 35678888876543233321111 111222233555444322211 125789999988877666544332222111111
Q ss_pred CCEEEEEeccCCCCCCCeeEEEeCCCCeEEEeccCCCCCceeEEEEE--CCEEEEEecCCCCCCCCeEEEEeCCCCeEEE
Q 007704 451 NGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL--NGKLYALGGFDGSAMVPSIEVYDPRLGSWMS 528 (592)
Q Consensus 451 ~g~IYV~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~~s~v~~--~~~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~ 528 (592)
+.+|++.....+ ..+++++|+.++..+.+...... .....+ +++.+++..... ....+|.+|+.+...++
T Consensus 254 G~~La~~~~~~g---~~~I~~~d~~tg~~~~lt~~~~~---~~~~~wSPDG~~I~f~s~~~--g~~~Iy~~d~~~g~~~~ 325 (429)
T PRK03629 254 GSKLAFALSKTG---SLNLYVMDLASGQIRQVTDGRSN---NTEPTWFPDSQNLAYTSDQA--GRPQVYKVNINGGAPQR 325 (429)
T ss_pred CCEEEEEEcCCC---CcEEEEEECCCCCEEEccCCCCC---cCceEECCCCCEEEEEeCCC--CCceEEEEECCCCCeEE
Confidence 345555433222 24699999999888777543321 122222 555444433211 13478999998877666
Q ss_pred cCCCCCCCcceEEEEECCEEEEEecccCCCccccEEEEEcCC-CcEEEcc
Q 007704 529 GEPMKLSRGYLGAAVVKEAIYVIGGVKNGSEIVDTVERFKEG-QGWEEIN 577 (592)
Q Consensus 529 v~~lp~~R~~~s~~v~~~~Iyv~GG~~~~~~~~~~v~~Yd~~-~~W~~v~ 577 (592)
+..... ........-+++.+++.+..+. ...++++|+. ..+..+.
T Consensus 326 lt~~~~-~~~~~~~SpDG~~Ia~~~~~~g---~~~I~~~dl~~g~~~~Lt 371 (429)
T PRK03629 326 ITWEGS-QNQDADVSSDGKFMVMVSSNGG---QQHIAKQDLATGGVQVLT 371 (429)
T ss_pred eecCCC-CccCEEECCCCCEEEEEEccCC---CceEEEEECCCCCeEEeC
Confidence 632111 1111111224544444433222 1468888987 7676654
No 97
>PRK04043 tolB translocation protein TolB; Provisional
Probab=92.25 E-value=20 Score=39.13 Aligned_cols=183 Identities=6% Similarity=-0.081 Sum_probs=101.0
Q ss_pred ceEEEEECCCCeEEECCCCCCCCcceEEEEECC-EEEEEecCCCCcccceEEEEeCCCCeEEEcccccCcccceEEEEEC
Q 007704 373 NTVESYSPANDEWTSRPSLNGTKGSLAGATIDN-KIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELN 451 (592)
Q Consensus 373 ~~v~~yd~~t~~W~~l~~lp~~r~~~~~~~~~~-~Iyv~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~~~a~~~~ 451 (592)
.++|.+|+.+++=+.+...+..- .....+-++ +|.+.-...+ ..++|++|..++.++++...+..-.......-+
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~~g~~-~~~~~SPDG~~la~~~~~~g---~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG 288 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASSQGML-VVSDVSKDGSKLLLTMAPKG---QPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDD 288 (419)
T ss_pred CEEEEEECCCCcEEEEecCCCcE-EeeEECCCCCEEEEEEccCC---CcEEEEEECCCCcEEEcccCCCccCccEECCCC
Confidence 38999999998777765432211 112223355 5554433222 368999999999998886544311112211124
Q ss_pred CEEEEEeccCCCCCCCeeEEEeCCCCeEEEeccCCCCCceeEEEEECCEEEEEecCCC-CC---CCCeEEEEeCCCCeEE
Q 007704 452 GVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDG-SA---MVPSIEVYDPRLGSWM 527 (592)
Q Consensus 452 g~IYV~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~~s~v~~~~~Lyv~GG~~~-~~---~~~~v~~yD~~t~~W~ 527 (592)
.+||...... ....++++|+.++..+++..... .. ....-+++.+++-.... .. ...+++.+|+.++.++
T Consensus 289 ~~I~F~Sdr~---g~~~Iy~~dl~~g~~~rlt~~g~--~~-~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~ 362 (419)
T PRK04043 289 KRIVFVSDRL---GYPNIFMKKLNSGSVEQVVFHGK--NN-SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR 362 (419)
T ss_pred CEEEEEECCC---CCceEEEEECCCCCeEeCccCCC--cC-ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE
Confidence 4676665432 23689999999998877753221 11 12222444333333221 11 2358999999999999
Q ss_pred EcCCCCCCCcceEEEEECCEEEEEecccCCCccccEEEEEcCC
Q 007704 528 SGEPMKLSRGYLGAAVVKEAIYVIGGVKNGSEIVDTVERFKEG 570 (592)
Q Consensus 528 ~v~~lp~~R~~~s~~v~~~~Iyv~GG~~~~~~~~~~v~~Yd~~ 570 (592)
.+..-. ....-...-+++.++|-...++ ...++.++..
T Consensus 363 ~LT~~~--~~~~p~~SPDG~~I~f~~~~~~---~~~L~~~~l~ 400 (419)
T PRK04043 363 RLTANG--VNQFPRFSSDGGSIMFIKYLGN---QSALGIIRLN 400 (419)
T ss_pred ECCCCC--CcCCeEECCCCCEEEEEEccCC---cEEEEEEecC
Confidence 886531 1111112225554444333222 2468888877
No 98
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=92.04 E-value=2.3 Score=43.29 Aligned_cols=108 Identities=18% Similarity=0.156 Sum_probs=75.9
Q ss_pred EEEE-ECCEEEEEeccCCCCCCCeeEEEeCCCCeEEEeccCCCCCceeEEEEECCEEEEEecCCCCCCCCeEEEEeCCCC
Q 007704 446 AAAE-LNGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLG 524 (592)
Q Consensus 446 ~a~~-~~g~IYV~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~~s~v~~~~~Lyv~GG~~~~~~~~~v~~yD~~t~ 524 (592)
.... .+|.+|.--|.-+. +.+.+||+.+++-....++|..-++=+++.++++||..== .....++||+.+
T Consensus 49 GL~~~~~g~LyESTG~yG~---S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTW-----k~~~~f~yd~~t- 119 (264)
T PF05096_consen 49 GLEFLDDGTLYESTGLYGQ---SSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTW-----KEGTGFVYDPNT- 119 (264)
T ss_dssp EEEEEETTEEEEEECSTTE---EEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEES-----SSSEEEEEETTT-
T ss_pred cEEecCCCEEEEeCCCCCc---EEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEe-----cCCeEEEEcccc-
Confidence 3444 57899998886553 6788999999998888889998899999999999999832 235688999876
Q ss_pred eEEEcCCCCCCCcceEEEEECCEEEEEecccCCCccccEEEEEcCC
Q 007704 525 SWMSGEPMKLSRGYLGAAVVKEAIYVIGGVKNGSEIVDTVERFKEG 570 (592)
Q Consensus 525 ~W~~v~~lp~~R~~~s~~v~~~~Iyv~GG~~~~~~~~~~v~~Yd~~ 570 (592)
.+.++..+.+..+.+++.-+..+++--|. +.++..||+
T Consensus 120 -l~~~~~~~y~~EGWGLt~dg~~Li~SDGS-------~~L~~~dP~ 157 (264)
T PF05096_consen 120 -LKKIGTFPYPGEGWGLTSDGKRLIMSDGS-------SRLYFLDPE 157 (264)
T ss_dssp -TEEEEEEE-SSS--EEEECSSCEEEE-SS-------SEEEEE-TT
T ss_pred -ceEEEEEecCCcceEEEcCCCEEEEECCc-------cceEEECCc
Confidence 45555556666778888777888887774 456677764
No 99
>PRK03629 tolB translocation protein TolB; Provisional
Probab=91.99 E-value=22 Score=38.91 Aligned_cols=183 Identities=9% Similarity=-0.020 Sum_probs=95.9
Q ss_pred ceEEEEECCCCeEEECCCCCCCCcceEEEEECCE-EEEEecCCCCcccceEEEEeCCCCeEEEcccccCcccceEEEEEC
Q 007704 373 NTVESYSPANDEWTSRPSLNGTKGSLAGATIDNK-IFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELN 451 (592)
Q Consensus 373 ~~v~~yd~~t~~W~~l~~lp~~r~~~~~~~~~~~-Iyv~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~~~a~~~~ 451 (592)
..++.+|..+++-+.+...+..-.. ...+-+++ |++.....+ ..+++++|..+++.+++......-.... ..-+
T Consensus 223 ~~i~i~dl~~G~~~~l~~~~~~~~~-~~~SPDG~~La~~~~~~g---~~~I~~~d~~tg~~~~lt~~~~~~~~~~-wSPD 297 (429)
T PRK03629 223 SALVIQTLANGAVRQVASFPRHNGA-PAFSPDGSKLAFALSKTG---SLNLYVMDLASGQIRQVTDGRSNNTEPT-WFPD 297 (429)
T ss_pred cEEEEEECCCCCeEEccCCCCCcCC-eEECCCCCEEEEEEcCCC---CcEEEEEECCCCCEEEccCCCCCcCceE-ECCC
Confidence 5789999998887777655432221 22233554 554433222 2469999999988877654322111111 1124
Q ss_pred CEEEEEeccCCCCCCCeeEEEeCCCCeEEEeccCCCCCceeEEEEECCEEEEEecCCCCCCCCeEEEEeCCCCeEEEcCC
Q 007704 452 GVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEP 531 (592)
Q Consensus 452 g~IYV~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~~s~v~~~~~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~ 531 (592)
++.+++..... ....++.+|+.++..+++...... .......-+++.+++.+.... ...++.+|+.++.++.+..
T Consensus 298 G~~I~f~s~~~--g~~~Iy~~d~~~g~~~~lt~~~~~-~~~~~~SpDG~~Ia~~~~~~g--~~~I~~~dl~~g~~~~Lt~ 372 (429)
T PRK03629 298 SQNLAYTSDQA--GRPQVYKVNINGGAPQRITWEGSQ-NQDADVSSDGKFMVMVSSNGG--QQHIAKQDLATGGVQVLTD 372 (429)
T ss_pred CCEEEEEeCCC--CCceEEEEECCCCCeEEeecCCCC-ccCEEECCCCCEEEEEEccCC--CceEEEEECCCCCeEEeCC
Confidence 44333333221 125788999988877666432211 111111225554444433222 2468999999999888764
Q ss_pred CCCCCcceEEEEECCEEEEEecccCCCccccEEEEEcCC
Q 007704 532 MKLSRGYLGAAVVKEAIYVIGGVKNGSEIVDTVERFKEG 570 (592)
Q Consensus 532 lp~~R~~~s~~v~~~~Iyv~GG~~~~~~~~~~v~~Yd~~ 570 (592)
.. ........-+++.+++.+..+. ...+++.+.+
T Consensus 373 ~~--~~~~p~~SpDG~~i~~~s~~~~---~~~l~~~~~~ 406 (429)
T PRK03629 373 TF--LDETPSIAPNGTMVIYSSSQGM---GSVLNLVSTD 406 (429)
T ss_pred CC--CCCCceECCCCCEEEEEEcCCC---ceEEEEEECC
Confidence 21 1111112236666666665432 2346666654
No 100
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=91.98 E-value=28 Score=40.13 Aligned_cols=211 Identities=14% Similarity=0.170 Sum_probs=111.2
Q ss_pred CCccCcceEEEEEC--CEEEEEeeCCCCCCcceEEEEECCCCeEEECCCCCCCCcceEEEEECCEEEEEecCCCCcccce
Q 007704 344 MSSARSYASAAMLN--GELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSD 421 (592)
Q Consensus 344 ~p~~R~~~s~v~~~--~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~lp~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~ 421 (592)
+...+..-..++++ |.=+.||+.. +..+.+|+-.+....--..-..+|......+-+|++.+.|+.++ .
T Consensus 303 LSis~~~I~t~~~N~tGDWiA~g~~k----lgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDg-----K 373 (893)
T KOG0291|consen 303 LSISDQKILTVSFNSTGDWIAFGCSK----LGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDG-----K 373 (893)
T ss_pred eecccceeeEEEecccCCEEEEcCCc----cceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCC-----c
Confidence 33344444445554 6666666633 45678887666655332222223333333344899999998764 5
Q ss_pred EEEEeCCCCeEEEcccccCcccceEEEEE--CCEEEEEeccCCCCCCCeeEEEeCCCCeEEEeccCCCCCceeEEEEEC-
Q 007704 422 VEMLDLDIGKWIRTRSMLQKRFALAAAEL--NGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVLN- 498 (592)
Q Consensus 422 v~~yD~~t~~W~~i~~~p~~R~~~~a~~~--~g~IYV~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~~s~v~~~- 498 (592)
+-+||...+.... .....-.+++++.+ .++..+-..-++ ++-.+|+....=-+.=..|. |...+++..+
T Consensus 374 VKvWn~~SgfC~v--TFteHts~Vt~v~f~~~g~~llssSLDG-----tVRAwDlkRYrNfRTft~P~-p~QfscvavD~ 445 (893)
T KOG0291|consen 374 VKVWNTQSGFCFV--TFTEHTSGVTAVQFTARGNVLLSSSLDG-----TVRAWDLKRYRNFRTFTSPE-PIQFSCVAVDP 445 (893)
T ss_pred EEEEeccCceEEE--EeccCCCceEEEEEEecCCEEEEeecCC-----eEEeeeecccceeeeecCCC-ceeeeEEEEcC
Confidence 6677776553321 12222334444332 344444333332 34556655433222112233 3345556665
Q ss_pred -CEEEEEecCCCCCCCCeEEEEeCCCCeEEEc-CCCCCCCcceEEEEECCEEEEEecccCCCccccEEEEEcCCCcEEEc
Q 007704 499 -GKLYALGGFDGSAMVPSIEVYDPRLGSWMSG-EPMKLSRGYLGAAVVKEAIYVIGGVKNGSEIVDTVERFKEGQGWEEI 576 (592)
Q Consensus 499 -~~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v-~~lp~~R~~~s~~v~~~~Iyv~GG~~~~~~~~~~v~~Yd~~~~W~~v 576 (592)
|.|++.|+.+. -+|++++..|++-..+ ..-..|-...++-. .+.+++-|.++ .+|..||.-.+|..+
T Consensus 446 sGelV~AG~~d~----F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~-~~~~LaS~SWD------kTVRiW~if~s~~~v 514 (893)
T KOG0291|consen 446 SGELVCAGAQDS----FEIFVWSVQTGQLLDILSGHEGPVSGLSFSP-DGSLLASGSWD------KTVRIWDIFSSSGTV 514 (893)
T ss_pred CCCEEEeeccce----EEEEEEEeecCeeeehhcCCCCcceeeEEcc-ccCeEEecccc------ceEEEEEeeccCcee
Confidence 88999988653 3678888888766554 22122222222222 34455555554 568888877777777
Q ss_pred cccCCC
Q 007704 577 NSRAIG 582 (592)
Q Consensus 577 ~~~p~~ 582 (592)
+++++.
T Consensus 515 Etl~i~ 520 (893)
T KOG0291|consen 515 ETLEIR 520 (893)
T ss_pred eeEeec
Confidence 665544
No 101
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=91.87 E-value=18 Score=37.66 Aligned_cols=146 Identities=11% Similarity=0.054 Sum_probs=71.5
Q ss_pred EEEEEeeCCCCCCcceEEEEECCC-CeEEECCCCCCCCcceEEEE-ECCE-EEEEecCCCCcccceEEEEeCC-CCeEEE
Q 007704 359 ELYIFGGGDGNSWHNTVESYSPAN-DEWTSRPSLNGTKGSLAGAT-IDNK-IFAIGGGNGLECFSDVEMLDLD-IGKWIR 434 (592)
Q Consensus 359 ~Iyv~GG~~~~~~~~~v~~yd~~t-~~W~~l~~lp~~r~~~~~~~-~~~~-Iyv~GG~~~~~~~~~v~~yD~~-t~~W~~ 434 (592)
.+|+..+.+ +.+..||..+ .+++.+...+.....+.++. -+++ +|+.+. . ...+..|+.. +++++.
T Consensus 3 ~~y~~~~~~-----~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~-~----~~~i~~~~~~~~g~l~~ 72 (330)
T PRK11028 3 IVYIASPES-----QQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVR-P----EFRVLSYRIADDGALTF 72 (330)
T ss_pred EEEEEcCCC-----CCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEEC-C----CCcEEEEEECCCCceEE
Confidence 467765433 4577777753 57766654443222222222 2444 566433 2 2556667765 566765
Q ss_pred cccccCcccceEEEEE-CC-EEEEEeccCCCCCCCeeEEEeCCCC-e-EEEeccCCCCCceeEEEEE-CC-EEEEEecCC
Q 007704 435 TRSMLQKRFALAAAEL-NG-VLYATGGYDGNEYMNSAERFDPREH-Y-WTKIANMNRRRGCHSLAVL-NG-KLYALGGFD 508 (592)
Q Consensus 435 i~~~p~~R~~~~a~~~-~g-~IYV~GG~~~~~~~~~v~~yD~~t~-~-W~~i~~~p~~R~~~s~v~~-~~-~Lyv~GG~~ 508 (592)
+...+.+..-+.++.. ++ .+|+.+- . .+.+.+||+.++ . ...+...+.....|+++.. ++ .+|+..-
T Consensus 73 ~~~~~~~~~p~~i~~~~~g~~l~v~~~-~----~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~-- 145 (330)
T PRK11028 73 AAESPLPGSPTHISTDHQGRFLFSASY-N----ANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCL-- 145 (330)
T ss_pred eeeecCCCCceEEEECCCCCEEEEEEc-C----CCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeC--
Confidence 5443332221222222 34 5666542 2 256777877532 1 1222222222233554444 44 5666532
Q ss_pred CCCCCCeEEEEeCCCC
Q 007704 509 GSAMVPSIEVYDPRLG 524 (592)
Q Consensus 509 ~~~~~~~v~~yD~~t~ 524 (592)
..+.+.+||..+.
T Consensus 146 ---~~~~v~v~d~~~~ 158 (330)
T PRK11028 146 ---KEDRIRLFTLSDD 158 (330)
T ss_pred ---CCCEEEEEEECCC
Confidence 2357889998763
No 102
>PRK02889 tolB translocation protein TolB; Provisional
Probab=91.61 E-value=24 Score=38.56 Aligned_cols=196 Identities=12% Similarity=0.035 Sum_probs=97.1
Q ss_pred CCEEEEEeeCCCCCCcceEEEEECCCCeEEECCCCCCCCcceEEEEECC-EEEEEecCCCCcccceEEEEeCCCCeEEEc
Q 007704 357 NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATIDN-KIFAIGGGNGLECFSDVEMLDLDIGKWIRT 435 (592)
Q Consensus 357 ~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~lp~~r~~~~~~~~~~-~Iyv~GG~~~~~~~~~v~~yD~~t~~W~~i 435 (592)
+++.+++...... ...+|.+|..+++=..+...+... .....+-++ +|++....++ ..++|.+|..++..+++
T Consensus 206 DG~~la~~s~~~~--~~~I~~~dl~~g~~~~l~~~~g~~-~~~~~SPDG~~la~~~~~~g---~~~Iy~~d~~~~~~~~l 279 (427)
T PRK02889 206 DGTKLAYVSFESK--KPVVYVHDLATGRRRVVANFKGSN-SAPAWSPDGRTLAVALSRDG---NSQIYTVNADGSGLRRL 279 (427)
T ss_pred CCCEEEEEEccCC--CcEEEEEECCCCCEEEeecCCCCc-cceEECCCCCEEEEEEccCC---CceEEEEECCCCCcEEC
Confidence 5554545443322 246999999988766664443211 112223355 4544433332 36899999988776665
Q ss_pred ccccCcccceEEEEECC-EEEEEeccCCCCCCCeeEEEeCCCCeEEEeccCCCCCceeEEEEECCEEEEEecCCCCCCCC
Q 007704 436 RSMLQKRFALAAAELNG-VLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVP 514 (592)
Q Consensus 436 ~~~p~~R~~~~a~~~~g-~IYV~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~~s~v~~~~~Lyv~GG~~~~~~~~ 514 (592)
..-........ ..-+| .|+...... ....++.+|..++..+.+.... .........-+++.+++....+. ..
T Consensus 280 t~~~~~~~~~~-wSpDG~~l~f~s~~~---g~~~Iy~~~~~~g~~~~lt~~g-~~~~~~~~SpDG~~Ia~~s~~~g--~~ 352 (427)
T PRK02889 280 TQSSGIDTEPF-FSPDGRSIYFTSDRG---GAPQIYRMPASGGAAQRVTFTG-SYNTSPRISPDGKLLAYISRVGG--AF 352 (427)
T ss_pred CCCCCCCcCeE-EcCCCCEEEEEecCC---CCcEEEEEECCCCceEEEecCC-CCcCceEECCCCCEEEEEEccCC--cE
Confidence 43221111111 12244 454433211 2357888998888777664221 11111112224544434332222 23
Q ss_pred eEEEEeCCCCeEEEcCCCCCCCcceEEEEECCEEEEEecccCCCccccEEEEEcCC
Q 007704 515 SIEVYDPRLGSWMSGEPMKLSRGYLGAAVVKEAIYVIGGVKNGSEIVDTVERFKEG 570 (592)
Q Consensus 515 ~v~~yD~~t~~W~~v~~lp~~R~~~s~~v~~~~Iyv~GG~~~~~~~~~~v~~Yd~~ 570 (592)
.++++|..+...+.+..-. ....-...-+++.+++....++ ...+++.+..
T Consensus 353 ~I~v~d~~~g~~~~lt~~~--~~~~p~~spdg~~l~~~~~~~g---~~~l~~~~~~ 403 (427)
T PRK02889 353 KLYVQDLATGQVTALTDTT--RDESPSFAPNGRYILYATQQGG---RSVLAAVSSD 403 (427)
T ss_pred EEEEEECCCCCeEEccCCC--CccCceECCCCCEEEEEEecCC---CEEEEEEECC
Confidence 7899999888877764321 1111111225666666554332 2456677765
No 103
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=91.60 E-value=3.3 Score=42.09 Aligned_cols=107 Identities=20% Similarity=0.250 Sum_probs=76.4
Q ss_pred ECCEEEEEecCCCCcccceEEEEeCCCCeEEEcccccCcccceEEEEECCEEEEEeccCCCCCCCeeEEEeCCCCeEEEe
Q 007704 403 IDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHYWTKI 482 (592)
Q Consensus 403 ~~~~Iyv~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~~~a~~~~g~IYV~GG~~~~~~~~~v~~yD~~t~~W~~i 482 (592)
.++.+|.--|..+ -+.+..||+.|++-....++|..-++-.++.++++||..-=.+ ..+++||+.+- +.+
T Consensus 54 ~~g~LyESTG~yG---~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~-----~~~f~yd~~tl--~~~ 123 (264)
T PF05096_consen 54 DDGTLYESTGLYG---QSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKE-----GTGFVYDPNTL--KKI 123 (264)
T ss_dssp ETTEEEEEECSTT---EEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSS-----SEEEEEETTTT--EEE
T ss_pred CCCEEEEeCCCCC---cEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecC-----CeEEEEccccc--eEE
Confidence 4788888877554 3788999999998877778888889999999999999985322 56799999863 555
Q ss_pred ccCCCCCceeEEEEECCEEEEEecCCCCCCCCeEEEEeCCCCe
Q 007704 483 ANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGS 525 (592)
Q Consensus 483 ~~~p~~R~~~s~v~~~~~Lyv~GG~~~~~~~~~v~~yD~~t~~ 525 (592)
...+.+.-+.+++.-+..|++..| .+.++.+||.+-+
T Consensus 124 ~~~~y~~EGWGLt~dg~~Li~SDG------S~~L~~~dP~~f~ 160 (264)
T PF05096_consen 124 GTFPYPGEGWGLTSDGKRLIMSDG------SSRLYFLDPETFK 160 (264)
T ss_dssp EEEE-SSS--EEEECSSCEEEE-S------SSEEEEE-TTT-S
T ss_pred EEEecCCcceEEEcCCCEEEEECC------ccceEEECCcccc
Confidence 555555677788877888999888 3578999998643
No 104
>PLN00181 protein SPA1-RELATED; Provisional
Probab=91.41 E-value=16 Score=43.30 Aligned_cols=178 Identities=16% Similarity=0.186 Sum_probs=87.2
Q ss_pred CCEEEEEeeCCCCCCcceEEEEECCCC--eEEEC--C--CCCCCCcceEEEEE---CCEEEEEecCCCCcccceEEEEeC
Q 007704 357 NGELYIFGGGDGNSWHNTVESYSPAND--EWTSR--P--SLNGTKGSLAGATI---DNKIFAIGGGNGLECFSDVEMLDL 427 (592)
Q Consensus 357 ~~~Iyv~GG~~~~~~~~~v~~yd~~t~--~W~~l--~--~lp~~r~~~~~~~~---~~~Iyv~GG~~~~~~~~~v~~yD~ 427 (592)
++.+++.||.++ .+..||..+. ..... + .+. .......+.+ .+..++.|+.+ ..+.+||.
T Consensus 494 dg~~latgg~D~-----~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~D-----g~v~lWd~ 562 (793)
T PLN00181 494 DGEFFATAGVNK-----KIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFE-----GVVQVWDV 562 (793)
T ss_pred CCCEEEEEeCCC-----EEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCC-----CeEEEEEC
Confidence 678888888664 4666765431 11110 0 000 0111112222 34566666654 46788898
Q ss_pred CCCeEEEccccc-CcccceEEEEE--CCEEEEEeccCCCCCCCeeEEEeCCCCeE-EEeccCCCCCceeEEEEE---CCE
Q 007704 428 DIGKWIRTRSML-QKRFALAAAEL--NGVLYATGGYDGNEYMNSAERFDPREHYW-TKIANMNRRRGCHSLAVL---NGK 500 (592)
Q Consensus 428 ~t~~W~~i~~~p-~~R~~~~a~~~--~g~IYV~GG~~~~~~~~~v~~yD~~t~~W-~~i~~~p~~R~~~s~v~~---~~~ 500 (592)
.+++-.. .+. ....-.+++.. ++.+++.||.+ ..+.+||+.+..- ..+.. . ....++.+ ++.
T Consensus 563 ~~~~~~~--~~~~H~~~V~~l~~~p~~~~~L~Sgs~D-----g~v~iWd~~~~~~~~~~~~---~-~~v~~v~~~~~~g~ 631 (793)
T PLN00181 563 ARSQLVT--EMKEHEKRVWSIDYSSADPTLLASGSDD-----GSVKLWSINQGVSIGTIKT---K-ANICCVQFPSESGR 631 (793)
T ss_pred CCCeEEE--EecCCCCCEEEEEEcCCCCCEEEEEcCC-----CEEEEEECCCCcEEEEEec---C-CCeEEEEEeCCCCC
Confidence 8764322 111 11112233332 56778888765 3578888876532 22211 1 11122222 577
Q ss_pred EEEEecCCCCCCCCeEEEEeCCCCe--EEEcCCCCCCCcceEEEEECCEEEEEecccCCCccccEEEEEcC
Q 007704 501 LYALGGFDGSAMVPSIEVYDPRLGS--WMSGEPMKLSRGYLGAAVVKEAIYVIGGVKNGSEIVDTVERFKE 569 (592)
Q Consensus 501 Lyv~GG~~~~~~~~~v~~yD~~t~~--W~~v~~lp~~R~~~s~~v~~~~Iyv~GG~~~~~~~~~~v~~Yd~ 569 (592)
+++.|+.++ .+.+||+.+.. ...+.. ......++...++..++.|+.++ .|.+||.
T Consensus 632 ~latgs~dg-----~I~iwD~~~~~~~~~~~~~--h~~~V~~v~f~~~~~lvs~s~D~------~ikiWd~ 689 (793)
T PLN00181 632 SLAFGSADH-----KVYYYDLRNPKLPLCTMIG--HSKTVSYVRFVDSSTLVSSSTDN------TLKLWDL 689 (793)
T ss_pred EEEEEeCCC-----eEEEEECCCCCccceEecC--CCCCEEEEEEeCCCEEEEEECCC------EEEEEeC
Confidence 888887653 68899987542 222211 11111223333566666676543 3556664
No 105
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=91.30 E-value=22 Score=38.33 Aligned_cols=210 Identities=13% Similarity=0.049 Sum_probs=117.0
Q ss_pred CCEEEEEeeCCCCCCcceEEEEECCCCeEEECCCCCCCCcceEEEEE-CCEEEEEecCCCCcc------cceEEEEeCCC
Q 007704 357 NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATI-DNKIFAIGGGNGLEC------FSDVEMLDLDI 429 (592)
Q Consensus 357 ~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~lp~~r~~~~~~~~-~~~Iyv~GG~~~~~~------~~~v~~yD~~t 429 (592)
+++.++++=..++.-...++++|..+++...- .++.+.... ++-. +++.+++...+.... ...++.+...+
T Consensus 134 dg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d-~i~~~~~~~-~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt 211 (414)
T PF02897_consen 134 DGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD-GIENPKFSS-VSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGT 211 (414)
T ss_dssp TSSEEEEEEEETTSSEEEEEEEETTTTEEEEE-EEEEEESEE-EEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS
T ss_pred CCCEEEEEecCCCCceEEEEEEECCCCcCcCC-cccccccce-EEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCC
Confidence 77888877655555567899999999965431 112222221 3333 456666665544322 67888888877
Q ss_pred CeEE--EcccccCccc-ceEEEE-ECCEEEEEeccCCCCCCCeeEEEeCCCC-----eEEEeccCCCCCceeEEEEECCE
Q 007704 430 GKWI--RTRSMLQKRF-ALAAAE-LNGVLYATGGYDGNEYMNSAERFDPREH-----YWTKIANMNRRRGCHSLAVLNGK 500 (592)
Q Consensus 430 ~~W~--~i~~~p~~R~-~~~a~~-~~g~IYV~GG~~~~~~~~~v~~yD~~t~-----~W~~i~~~p~~R~~~s~v~~~~~ 500 (592)
..-. .+-..+.... ...+.. -+++..++.-..+.. .+.+++.|+... .|..+.+--.. ..+.+...++.
T Consensus 212 ~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~-~s~v~~~d~~~~~~~~~~~~~l~~~~~~-~~~~v~~~~~~ 289 (414)
T PF02897_consen 212 PQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTS-ESEVYLLDLDDGGSPDAKPKLLSPREDG-VEYYVDHHGDR 289 (414)
T ss_dssp -GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSS-EEEEEEEECCCTTTSS-SEEEEEESSSS--EEEEEEETTE
T ss_pred ChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEcccc-CCeEEEEeccccCCCcCCcEEEeCCCCc-eEEEEEccCCE
Confidence 6543 2222222333 222222 244443333333222 478999999875 78887542222 22334445999
Q ss_pred EEEEecCCCCCCCCeEEEEeCCCCe---EEE-cCCCCCCCcceEEEEECCEEEEEecccCCCccccEEEEEcCCCcEEEc
Q 007704 501 LYALGGFDGSAMVPSIEVYDPRLGS---WMS-GEPMKLSRGYLGAAVVKEAIYVIGGVKNGSEIVDTVERFKEGQGWEEI 576 (592)
Q Consensus 501 Lyv~GG~~~~~~~~~v~~yD~~t~~---W~~-v~~lp~~R~~~s~~v~~~~Iyv~GG~~~~~~~~~~v~~Yd~~~~W~~v 576 (592)
+|+.-..+ .....+..+++.... |.. +.+-......-.+...++.|++..=.+. ...+.+||+...|...
T Consensus 290 ~yi~Tn~~--a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~----~~~l~v~~~~~~~~~~ 363 (414)
T PF02897_consen 290 LYILTNDD--APNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENG----SSRLRVYDLDDGKESR 363 (414)
T ss_dssp EEEEE-TT---TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETT----EEEEEEEETT-TEEEE
T ss_pred EEEeeCCC--CCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECC----ccEEEEEECCCCcEEe
Confidence 99986632 334578889888764 764 4332222344556667888887655433 3779999996355443
No 106
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=90.91 E-value=25 Score=37.49 Aligned_cols=152 Identities=18% Similarity=0.177 Sum_probs=84.5
Q ss_pred EEECCEEEEEeeCCCCCCcceEEEEECCCCe--EEECCCCCCCCcceEEEEECCEEEEEecCCCCcccceEEEEeCCCC-
Q 007704 354 AMLNGELYIFGGGDGNSWHNTVESYSPANDE--WTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIG- 430 (592)
Q Consensus 354 v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~--W~~l~~lp~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~v~~yD~~t~- 430 (592)
+..++++|+. ..+ ..++.+|+.+.+ |+................-+|+||+-.. ++ .++.||..++
T Consensus 65 ~~~dg~v~~~-~~~-----G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~-~g-----~~y~ld~~~G~ 132 (370)
T COG1520 65 ADGDGTVYVG-TRD-----GNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSW-DG-----KLYALDASTGT 132 (370)
T ss_pred EeeCCeEEEe-cCC-----CcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecc-cc-----eEEEEECCCCc
Confidence 5568899986 112 179999999887 8654321001111112222788766433 22 7889999544
Q ss_pred -eEEEcccccCcccceEEEEECCEEEEEeccCCCCCCCeeEEEeCCCC--eEEEeccC-CCCCceeEEEEECCEEEEEec
Q 007704 431 -KWIRTRSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREH--YWTKIANM-NRRRGCHSLAVLNGKLYALGG 506 (592)
Q Consensus 431 -~W~~i~~~p~~R~~~~a~~~~g~IYV~GG~~~~~~~~~v~~yD~~t~--~W~~i~~~-p~~R~~~s~v~~~~~Lyv~GG 506 (592)
.|+.-.... .+..-..+..++.+|+.. ....++.+|..++ .|+.-.+. ...+.....+..++.+|+-..
T Consensus 133 ~~W~~~~~~~-~~~~~~~v~~~~~v~~~s------~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~ 205 (370)
T COG1520 133 LVWSRNVGGS-PYYASPPVVGDGTVYVGT------DDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSD 205 (370)
T ss_pred EEEEEecCCC-eEEecCcEEcCcEEEEec------CCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecC
Confidence 577543332 444444555677777753 1246788888765 48744322 222222222344666666422
Q ss_pred CCCCCCCCeEEEEeCCCC--eEEE
Q 007704 507 FDGSAMVPSIEVYDPRLG--SWMS 528 (592)
Q Consensus 507 ~~~~~~~~~v~~yD~~t~--~W~~ 528 (592)
+ . ...++.+|+.++ .|..
T Consensus 206 -~--~-~~~~~a~~~~~G~~~w~~ 225 (370)
T COG1520 206 -G--Y-DGILYALNAEDGTLKWSQ 225 (370)
T ss_pred -C--C-cceEEEEEccCCcEeeee
Confidence 1 1 236899999765 5875
No 107
>smart00284 OLF Olfactomedin-like domains.
Probab=90.88 E-value=20 Score=36.40 Aligned_cols=184 Identities=14% Similarity=0.147 Sum_probs=99.6
Q ss_pred CCEEEEEeeCCCCCCcceEEEEEC----CCCeEEECCCCCCCCcceEEEEECCEEEEEecCCCCcccceEEEEeCCCCeE
Q 007704 357 NGELYIFGGGDGNSWHNTVESYSP----ANDEWTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIGKW 432 (592)
Q Consensus 357 ~~~Iyv~GG~~~~~~~~~v~~yd~----~t~~W~~l~~lp~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~v~~yD~~t~~W 432 (592)
++++|++.|.. ...+.++.|.- ....+...=.+|.+-.+...++++|.+|.--. ....+..||+.+++-
T Consensus 34 ~~~~wv~~~~~--~~~~~v~ey~~~~~f~~~~~~~~~~Lp~~~~GtG~VVYngslYY~~~-----~s~~iiKydL~t~~v 106 (255)
T smart00284 34 KSLYWYMPLNT--RVLRSVREYSSMSDFQMGKNPTDHPLPHAGQGTGVVVYNGSLYFNKF-----NSHDICRFDLTTETY 106 (255)
T ss_pred CceEEEEcccc--CCCcEEEEecCHHHHhccCCceEEECCCccccccEEEECceEEEEec-----CCccEEEEECCCCcE
Confidence 47888886643 12345666643 23333332235666666778888999988643 236799999999876
Q ss_pred EEcccccCcc----cc--------eEEEEECCEEEEEeccCCCCCCCeeEEEeCCCC----eEEEeccCCCCCceeEEEE
Q 007704 433 IRTRSMLQKR----FA--------LAAAELNGVLYATGGYDGNEYMNSAERFDPREH----YWTKIANMNRRRGCHSLAV 496 (592)
Q Consensus 433 ~~i~~~p~~R----~~--------~~a~~~~g~IYV~GG~~~~~~~~~v~~yD~~t~----~W~~i~~~p~~R~~~s~v~ 496 (592)
.....+|.+. +. .-.++-++-|+|+=........--+-..||.+- +|.. ..+.... ..+.+
T Consensus 107 ~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~ivvSkLnp~tL~ve~tW~T--~~~k~sa-~naFm 183 (255)
T smart00284 107 QKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKIVISKLNPATLTIENTWIT--TYNKRSA-SNAFM 183 (255)
T ss_pred EEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCCEEEEeeCcccceEEEEEEc--CCCcccc-cccEE
Confidence 5444444322 11 122333455555533322222223446677654 4654 2333322 24455
Q ss_pred ECCEEEEEecCCCCCCCCeEEEEeCCCCeEEEcC-CCCCCCcceEEEEE---CCEEEEE
Q 007704 497 LNGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGE-PMKLSRGYLGAAVV---KEAIYVI 551 (592)
Q Consensus 497 ~~~~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~-~lp~~R~~~s~~v~---~~~Iyv~ 551 (592)
+-|.||++-... .....-.+.||+.+++=..+. +++.+...+++.-. +.+||+.
T Consensus 184 vCGvLY~~~s~~-~~~~~I~yayDt~t~~~~~~~i~f~n~y~~~s~l~YNP~d~~LY~w 241 (255)
T smart00284 184 ICGILYVTRSLG-SKGEKVFYAYDTNTGKEGHLDIPFENMYEYISMLDYNPNDRKLYAW 241 (255)
T ss_pred EeeEEEEEccCC-CCCcEEEEEEECCCCccceeeeeeccccccceeceeCCCCCeEEEE
Confidence 577899985321 122334689999987643332 33333444555554 4678874
No 108
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=90.78 E-value=27 Score=37.68 Aligned_cols=192 Identities=14% Similarity=0.058 Sum_probs=100.4
Q ss_pred cceEEEEECCCCeEE--ECCCCCCCCc-c-eEEEEECCEEEEEecCCCCcccceEEEEeCCCC-----eEEEcccccCcc
Q 007704 372 HNTVESYSPANDEWT--SRPSLNGTKG-S-LAGATIDNKIFAIGGGNGLECFSDVEMLDLDIG-----KWIRTRSMLQKR 442 (592)
Q Consensus 372 ~~~v~~yd~~t~~W~--~l~~lp~~r~-~-~~~~~~~~~Iyv~GG~~~~~~~~~v~~yD~~t~-----~W~~i~~~p~~R 442 (592)
...++.+...+..-. .+=.-+.+.. . ....+-+++..++.-..+.. .+++++.|.... .|..+.+- ..-
T Consensus 201 ~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~-~s~v~~~d~~~~~~~~~~~~~l~~~-~~~ 278 (414)
T PF02897_consen 201 PRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTS-ESEVYLLDLDDGGSPDAKPKLLSPR-EDG 278 (414)
T ss_dssp CEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSS-EEEEEEEECCCTTTSS-SEEEEEES-SSS
T ss_pred CcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEcccc-CCeEEEEeccccCCCcCCcEEEeCC-CCc
Confidence 556777766655332 1111112222 2 22223355544443322222 589999999875 78877542 222
Q ss_pred cceEEEEECCEEEEEeccCCCCCCCeeEEEeCCCCe---EE-EeccCCCCCceeEEEEECCEEEEEecCCCCCCCCeEEE
Q 007704 443 FALAAAELNGVLYATGGYDGNEYMNSAERFDPREHY---WT-KIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEV 518 (592)
Q Consensus 443 ~~~~a~~~~g~IYV~GG~~~~~~~~~v~~yD~~t~~---W~-~i~~~p~~R~~~s~v~~~~~Lyv~GG~~~~~~~~~v~~ 518 (592)
..+.+...++.+|+....+ .....+..+++.... |. .+.+-......-.+...++.|++..=.+ ....+.+
T Consensus 279 ~~~~v~~~~~~~yi~Tn~~--a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~---~~~~l~v 353 (414)
T PF02897_consen 279 VEYYVDHHGDRLYILTNDD--APNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYREN---GSSRLRV 353 (414)
T ss_dssp -EEEEEEETTEEEEEE-TT---TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEET---TEEEEEE
T ss_pred eEEEEEccCCEEEEeeCCC--CCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEEC---CccEEEE
Confidence 3334445599999987633 334678888888765 76 4443333344455566688888875432 2457899
Q ss_pred EeCC-CCeEEEcCCCCCCCcceEEEEE---CCE-EEEEecccCCCccccEEEEEcCC-CcEEEc
Q 007704 519 YDPR-LGSWMSGEPMKLSRGYLGAAVV---KEA-IYVIGGVKNGSEIVDTVERFKEG-QGWEEI 576 (592)
Q Consensus 519 yD~~-t~~W~~v~~lp~~R~~~s~~v~---~~~-Iyv~GG~~~~~~~~~~v~~Yd~~-~~W~~v 576 (592)
+|+. ...-..+ ++|.. +..+.... .+. .|.+.|.... ..++.||+. ++.+.+
T Consensus 354 ~~~~~~~~~~~~-~~p~~-g~v~~~~~~~~~~~~~~~~ss~~~P----~~~y~~d~~t~~~~~~ 411 (414)
T PF02897_consen 354 YDLDDGKESREI-PLPEA-GSVSGVSGDFDSDELRFSYSSFTTP----PTVYRYDLATGELTLL 411 (414)
T ss_dssp EETT-TEEEEEE-ESSSS-SEEEEEES-TT-SEEEEEEEETTEE----EEEEEEETTTTCEEEE
T ss_pred EECCCCcEEeee-cCCcc-eEEeccCCCCCCCEEEEEEeCCCCC----CEEEEEECCCCCEEEE
Confidence 9998 3322223 33322 21111111 233 4456666544 679999988 665543
No 109
>PRK02889 tolB translocation protein TolB; Provisional
Probab=90.49 E-value=30 Score=37.75 Aligned_cols=189 Identities=11% Similarity=-0.044 Sum_probs=89.7
Q ss_pred ceEEEEECCCCeEEECCCCCCCCcceEEEEECCEEEEEecCCCCcccceEEEEeCCCCeEEEcccccCcccceEEEEECC
Q 007704 373 NTVESYSPANDEWTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNG 452 (592)
Q Consensus 373 ~~v~~yd~~t~~W~~l~~lp~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~~~a~~~~g 452 (592)
..+|..|........+...+.+-. ....+-+++.+++..... ....++++|+.+++=..+...+..... ....-++
T Consensus 176 ~~L~~~D~dG~~~~~l~~~~~~v~-~p~wSPDG~~la~~s~~~--~~~~I~~~dl~~g~~~~l~~~~g~~~~-~~~SPDG 251 (427)
T PRK02889 176 YQLQISDADGQNAQSALSSPEPII-SPAWSPDGTKLAYVSFES--KKPVVYVHDLATGRRRVVANFKGSNSA-PAWSPDG 251 (427)
T ss_pred cEEEEECCCCCCceEeccCCCCcc-cceEcCCCCEEEEEEccC--CCcEEEEEECCCCCEEEeecCCCCccc-eEECCCC
Confidence 467777776554444432222111 112223555444443321 135799999988865555433321111 1111244
Q ss_pred -EEEEEeccCCCCCCCeeEEEeCCCCeEEEeccCCCCCceeEEEEECCEEEEEecCCCCCCCCeEEEEeCCCCeEEEcCC
Q 007704 453 -VLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEP 531 (592)
Q Consensus 453 -~IYV~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~~s~v~~~~~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~ 531 (592)
+|++....++ ..++|.+|+.++..+++..-..... .....-+++-+++....+ ....++.++..+...+.+..
T Consensus 252 ~~la~~~~~~g---~~~Iy~~d~~~~~~~~lt~~~~~~~-~~~wSpDG~~l~f~s~~~--g~~~Iy~~~~~~g~~~~lt~ 325 (427)
T PRK02889 252 RTLAVALSRDG---NSQIYTVNADGSGLRRLTQSSGIDT-EPFFSPDGRSIYFTSDRG--GAPQIYRMPASGGAAQRVTF 325 (427)
T ss_pred CEEEEEEccCC---CceEEEEECCCCCcEECCCCCCCCc-CeEEcCCCCEEEEEecCC--CCcEEEEEECCCCceEEEec
Confidence 5554443332 3679999998877666643221111 111222554334432111 12478888888777776642
Q ss_pred CCCCCcceEEEE-ECCEEEEEecccCCCccccEEEEEcCC-CcEEEc
Q 007704 532 MKLSRGYLGAAV-VKEAIYVIGGVKNGSEIVDTVERFKEG-QGWEEI 576 (592)
Q Consensus 532 lp~~R~~~s~~v-~~~~Iyv~GG~~~~~~~~~~v~~Yd~~-~~W~~v 576 (592)
. ......... -+++.+++....+. . ..++++|.. .....+
T Consensus 326 ~--g~~~~~~~~SpDG~~Ia~~s~~~g-~--~~I~v~d~~~g~~~~l 367 (427)
T PRK02889 326 T--GSYNTSPRISPDGKLLAYISRVGG-A--FKLYVQDLATGQVTAL 367 (427)
T ss_pred C--CCCcCceEECCCCCEEEEEEccCC-c--EEEEEEECCCCCeEEc
Confidence 1 111112222 24443333332221 1 368888876 555544
No 110
>PTZ00420 coronin; Provisional
Probab=89.46 E-value=44 Score=38.11 Aligned_cols=148 Identities=15% Similarity=0.160 Sum_probs=70.6
Q ss_pred CEEEEEeeCCCCCCcceEEEEECCCCe--EEECC----CCCCCCcceEEEEE--CC-EEEEEecCCCCcccceEEEEeCC
Q 007704 358 GELYIFGGGDGNSWHNTVESYSPANDE--WTSRP----SLNGTKGSLAGATI--DN-KIFAIGGGNGLECFSDVEMLDLD 428 (592)
Q Consensus 358 ~~Iyv~GG~~~~~~~~~v~~yd~~t~~--W~~l~----~lp~~r~~~~~~~~--~~-~Iyv~GG~~~~~~~~~v~~yD~~ 428 (592)
+.+++.||.++ .+.+||+.+.. ...+. .+......-..+.+ ++ .+++.||.+ ..+.+||+.
T Consensus 87 ~~lLASgS~Dg-----tIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~D-----gtIrIWDl~ 156 (568)
T PTZ00420 87 SEILASGSEDL-----TIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFD-----SFVNIWDIE 156 (568)
T ss_pred CCEEEEEeCCC-----eEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCC-----CeEEEEECC
Confidence 56778887664 56777776431 11110 11111111222333 23 455666654 467888988
Q ss_pred CCeEEEcccccCcccceEEEE-ECCEEEEEeccCCCCCCCeeEEEeCCCCeEE-EeccCCCCCceeEE--EE--ECCEEE
Q 007704 429 IGKWIRTRSMLQKRFALAAAE-LNGVLYATGGYDGNEYMNSAERFDPREHYWT-KIANMNRRRGCHSL--AV--LNGKLY 502 (592)
Q Consensus 429 t~~W~~i~~~p~~R~~~~a~~-~~g~IYV~GG~~~~~~~~~v~~yD~~t~~W~-~i~~~p~~R~~~s~--v~--~~~~Ly 502 (592)
+++=. ..+.....-.++.. .+|.+++.++.+ ..+.+||++++.=. .+..-...+....+ .. -++..+
T Consensus 157 tg~~~--~~i~~~~~V~SlswspdG~lLat~s~D-----~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~I 229 (568)
T PTZ00420 157 NEKRA--FQINMPKKLSSLKWNIKGNLLSGTCVG-----KHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYI 229 (568)
T ss_pred CCcEE--EEEecCCcEEEEEECCCCCEEEEEecC-----CEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEE
Confidence 76421 11111111122222 267777777644 46889999876422 11111111111111 11 244566
Q ss_pred EEecCCCCCCCCeEEEEeCCC
Q 007704 503 ALGGFDGSAMVPSIEVYDPRL 523 (592)
Q Consensus 503 v~GG~~~~~~~~~v~~yD~~t 523 (592)
+.+|.++. ....+.+||+..
T Consensus 230 lTtG~d~~-~~R~VkLWDlr~ 249 (568)
T PTZ00420 230 LSTGFSKN-NMREMKLWDLKN 249 (568)
T ss_pred EEEEcCCC-CccEEEEEECCC
Confidence 66665542 224688899874
No 111
>PRK01742 tolB translocation protein TolB; Provisional
Probab=89.40 E-value=30 Score=37.80 Aligned_cols=177 Identities=11% Similarity=0.041 Sum_probs=86.9
Q ss_pred CCEEEEEeeCCCCCCcceEEEEECCCCeEEECCCCCCCCcceEEEEECCEEEEEec-CCCCcccceEEEEeCCCCeEEEc
Q 007704 357 NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATIDNKIFAIGG-GNGLECFSDVEMLDLDIGKWIRT 435 (592)
Q Consensus 357 ~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~lp~~r~~~~~~~~~~~Iyv~GG-~~~~~~~~~v~~yD~~t~~W~~i 435 (592)
+++.+++....+. ...++.+|..+++-+.+...+.... .....-+++.++++. .++ ..++|.+|+.++..+.+
T Consensus 214 DG~~la~~s~~~~--~~~i~i~dl~tg~~~~l~~~~g~~~-~~~wSPDG~~La~~~~~~g---~~~Iy~~d~~~~~~~~l 287 (429)
T PRK01742 214 DGSKLAYVSFENK--KSQLVVHDLRSGARKVVASFRGHNG-APAFSPDGSRLAFASSKDG---VLNIYVMGANGGTPSQL 287 (429)
T ss_pred CCCEEEEEEecCC--CcEEEEEeCCCCceEEEecCCCccC-ceeECCCCCEEEEEEecCC---cEEEEEEECCCCCeEee
Confidence 4544455543322 2468999998887666654433211 122233665444443 222 24688999988877666
Q ss_pred ccccCcccceEEEEECCE-EEEEeccCCCCCCCeeEEEeCCCCeEEEeccCCCCCceeEEEEECCEEEEEecCCCCCCCC
Q 007704 436 RSMLQKRFALAAAELNGV-LYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVP 514 (592)
Q Consensus 436 ~~~p~~R~~~~a~~~~g~-IYV~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~~s~v~~~~~Lyv~GG~~~~~~~~ 514 (592)
..-...-.... ..-+++ |+.....++ ...+|.+|..+..-..+.. ... .....-+++.+++.+. .
T Consensus 288 t~~~~~~~~~~-wSpDG~~i~f~s~~~g---~~~I~~~~~~~~~~~~l~~---~~~-~~~~SpDG~~ia~~~~------~ 353 (429)
T PRK01742 288 TSGAGNNTEPS-WSPDGQSILFTSDRSG---SPQVYRMSASGGGASLVGG---RGY-SAQISADGKTLVMING------D 353 (429)
T ss_pred ccCCCCcCCEE-ECCCCCEEEEEECCCC---CceEEEEECCCCCeEEecC---CCC-CccCCCCCCEEEEEcC------C
Confidence 43221111111 112444 544433222 2467777776654443321 111 1111224444434332 3
Q ss_pred eEEEEeCCCCeEEEcCCCCCCCcceEEEEECCEEEEEeccc
Q 007704 515 SIEVYDPRLGSWMSGEPMKLSRGYLGAAVVKEAIYVIGGVK 555 (592)
Q Consensus 515 ~v~~yD~~t~~W~~v~~lp~~R~~~s~~v~~~~Iyv~GG~~ 555 (592)
.++.+|..+..++.+..-. ........-+++.+++++..
T Consensus 354 ~i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~ 392 (429)
T PRK01742 354 NVVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQ 392 (429)
T ss_pred CEEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcC
Confidence 5778999998888764221 11111122266677776653
No 112
>smart00284 OLF Olfactomedin-like domains.
Probab=89.16 E-value=28 Score=35.42 Aligned_cols=171 Identities=15% Similarity=0.138 Sum_probs=93.0
Q ss_pred CCEEEEEecCCCCcccceEEEEe----CCCCeEEEcccccCcccceEEEEECCEEEEEeccCCCCCCCeeEEEeCCCCeE
Q 007704 404 DNKIFAIGGGNGLECFSDVEMLD----LDIGKWIRTRSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHYW 479 (592)
Q Consensus 404 ~~~Iyv~GG~~~~~~~~~v~~yD----~~t~~W~~i~~~p~~R~~~~a~~~~g~IYV~GG~~~~~~~~~v~~yD~~t~~W 479 (592)
++++|++.+.. ...+.++.|. ...+.+...-.+|.+-.+...++++|.+|.--.. .+.+.+||+.+.+-
T Consensus 34 ~~~~wv~~~~~--~~~~~v~ey~~~~~f~~~~~~~~~~Lp~~~~GtG~VVYngslYY~~~~-----s~~iiKydL~t~~v 106 (255)
T smart00284 34 KSLYWYMPLNT--RVLRSVREYSSMSDFQMGKNPTDHPLPHAGQGTGVVVYNGSLYFNKFN-----SHDICRFDLTTETY 106 (255)
T ss_pred CceEEEEcccc--CCCcEEEEecCHHHHhccCCceEEECCCccccccEEEECceEEEEecC-----CccEEEEECCCCcE
Confidence 47888886643 1234555553 3344444444567777888889999999985432 36799999999886
Q ss_pred EEeccCCCC----C-----ceeEEE---EECCEEEEEecCCCCCCCCeEEEEeCCCC----eEEEcCCCCCCCcceEEEE
Q 007704 480 TKIANMNRR----R-----GCHSLA---VLNGKLYALGGFDGSAMVPSIEVYDPRLG----SWMSGEPMKLSRGYLGAAV 543 (592)
Q Consensus 480 ~~i~~~p~~----R-----~~~s~v---~~~~~Lyv~GG~~~~~~~~~v~~yD~~t~----~W~~v~~lp~~R~~~s~~v 543 (592)
.....+|.. + .+++-+ +-.+-|+++=......-.--+-.+|+.+- +|.. ..+. +....+.+
T Consensus 107 ~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~ivvSkLnp~tL~ve~tW~T--~~~k-~sa~naFm 183 (255)
T smart00284 107 QKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKIVISKLNPATLTIENTWIT--TYNK-RSASNAFM 183 (255)
T ss_pred EEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCCEEEEeeCcccceEEEEEEc--CCCc-ccccccEE
Confidence 544444422 1 122222 22334555422111111112456777664 4554 2222 23335556
Q ss_pred ECCEEEEEecccCCCccccEEEEEcCC-CcEEEccccCCCCccce
Q 007704 544 VKEAIYVIGGVKNGSEIVDTVERFKEG-QGWEEINSRAIGKRCFM 587 (592)
Q Consensus 544 ~~~~Iyv~GG~~~~~~~~~~v~~Yd~~-~~W~~v~~~p~~~r~~~ 587 (592)
+-|.+|++-.... ....-.+.||.. .+ .....+|...|..+
T Consensus 184 vCGvLY~~~s~~~--~~~~I~yayDt~t~~-~~~~~i~f~n~y~~ 225 (255)
T smart00284 184 ICGILYVTRSLGS--KGEKVFYAYDTNTGK-EGHLDIPFENMYEY 225 (255)
T ss_pred EeeEEEEEccCCC--CCcEEEEEEECCCCc-cceeeeeecccccc
Confidence 6788999864221 122447789977 43 23344565555443
No 113
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=89.04 E-value=33 Score=36.19 Aligned_cols=197 Identities=15% Similarity=0.129 Sum_probs=100.4
Q ss_pred EEeeCCC-CCCcceEEEEECCCCeEEECCCCCCC-CcceEEE-EECCEEEEEecCCCCcccceEEEE--eCCCCeEEEcc
Q 007704 362 IFGGGDG-NSWHNTVESYSPANDEWTSRPSLNGT-KGSLAGA-TIDNKIFAIGGGNGLECFSDVEML--DLDIGKWIRTR 436 (592)
Q Consensus 362 v~GG~~~-~~~~~~v~~yd~~t~~W~~l~~lp~~-r~~~~~~-~~~~~Iyv~GG~~~~~~~~~v~~y--D~~t~~W~~i~ 436 (592)
++|++.. ..--=.++.||..+.++..+...... ...+-+. .-++.||+..... .....+..| +..+++.+.+.
T Consensus 3 ~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~--~~~g~v~~~~i~~~~g~L~~~~ 80 (345)
T PF10282_consen 3 YVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGS--GDSGGVSSYRIDPDTGTLTLLN 80 (345)
T ss_dssp EEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTS--STTTEEEEEEEETTTTEEEEEE
T ss_pred EEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccc--cCCCCEEEEEECCCcceeEEee
Confidence 4566553 22222356677799999876542211 1111122 2356788886532 122344444 55557888887
Q ss_pred cccCcccceEEEEE---CCEEEEEeccCCCCCCCeeEEEeCCCC-eEEEe---------ccCC---CCCceeEEEEE--C
Q 007704 437 SMLQKRFALAAAEL---NGVLYATGGYDGNEYMNSAERFDPREH-YWTKI---------ANMN---RRRGCHSLAVL--N 498 (592)
Q Consensus 437 ~~p~~R~~~~a~~~---~g~IYV~GG~~~~~~~~~v~~yD~~t~-~W~~i---------~~~p---~~R~~~s~v~~--~ 498 (592)
..+......+-..+ +..+|+.. +. ...+.+|++... .-... .+-+ ..-..|++... +
T Consensus 81 ~~~~~g~~p~~i~~~~~g~~l~van-y~----~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg 155 (345)
T PF10282_consen 81 SVPSGGSSPCHIAVDPDGRFLYVAN-YG----GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDG 155 (345)
T ss_dssp EEEESSSCEEEEEECTTSSEEEEEE-TT----TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTS
T ss_pred eeccCCCCcEEEEEecCCCEEEEEE-cc----CCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCC
Confidence 76643334333334 44566653 22 246778887763 22221 1111 22334555555 3
Q ss_pred CEEEEEecCCCCCCCCeEEEEeCCCCe--EEEcC--CCCCCCcceEEEEE--CCEEEEEecccCCCccccEEEEEc--CC
Q 007704 499 GKLYALGGFDGSAMVPSIEVYDPRLGS--WMSGE--PMKLSRGYLGAAVV--KEAIYVIGGVKNGSEIVDTVERFK--EG 570 (592)
Q Consensus 499 ~~Lyv~GG~~~~~~~~~v~~yD~~t~~--W~~v~--~lp~~R~~~s~~v~--~~~Iyv~GG~~~~~~~~~~v~~Yd--~~ 570 (592)
..+|+..= -.+.|++|+..... ..... .+|..-....++.. +..+||+.-.++ .|.+|+ ..
T Consensus 156 ~~v~v~dl-----G~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~------~v~v~~~~~~ 224 (345)
T PF10282_consen 156 RFVYVPDL-----GADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSN------TVSVFDYDPS 224 (345)
T ss_dssp SEEEEEET-----TTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTT------EEEEEEEETT
T ss_pred CEEEEEec-----CCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCC------cEEEEeeccc
Confidence 56777631 14578888887665 65533 23443333344444 357999887653 355554 33
Q ss_pred -CcEEEc
Q 007704 571 -QGWEEI 576 (592)
Q Consensus 571 -~~W~~v 576 (592)
..|+.+
T Consensus 225 ~g~~~~~ 231 (345)
T PF10282_consen 225 DGSLTEI 231 (345)
T ss_dssp TTEEEEE
T ss_pred CCceeEE
Confidence 455554
No 114
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.69 E-value=16 Score=36.62 Aligned_cols=101 Identities=19% Similarity=0.321 Sum_probs=56.9
Q ss_pred EEEEEeccCCCCCCCeeEEEeCCCCeEEE-------------e---ccCCCCCceeEEEEECCEEEEEecCCCCCCCCeE
Q 007704 453 VLYATGGYDGNEYMNSAERFDPREHYWTK-------------I---ANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSI 516 (592)
Q Consensus 453 ~IYV~GG~~~~~~~~~v~~yD~~t~~W~~-------------i---~~~p~~R~~~s~v~~~~~Lyv~GG~~~~~~~~~v 516 (592)
+-++.||.+. +-.+|.||- +.|.. + |....+++..+.+..++.++|+
T Consensus 176 krlvSgGcDn---~VkiW~~~~--~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIw------------ 238 (299)
T KOG1332|consen 176 KRLVSGGCDN---LVKIWKFDS--DSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIW------------ 238 (299)
T ss_pred ceeeccCCcc---ceeeeecCC--cchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEE------------
Confidence 4467787652 344555543 35532 1 3344667666666667777766
Q ss_pred EEEeCCCCeEEE--cCCCCCCCcceEEEEECCEEEEEecccCCCccccEEEEEcCC--CcEEEccc
Q 007704 517 EVYDPRLGSWMS--GEPMKLSRGYLGAAVVKEAIYVIGGVKNGSEIVDTVERFKEG--QGWEEINS 578 (592)
Q Consensus 517 ~~yD~~t~~W~~--v~~lp~~R~~~s~~v~~~~Iyv~GG~~~~~~~~~~v~~Yd~~--~~W~~v~~ 578 (592)
.-+.+...|+. +.+.|.+....+-...++.+-|-||. +.|.+|.+. .+|.+++.
T Consensus 239 -t~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~Gd-------Nkvtlwke~~~Gkw~~v~~ 296 (299)
T KOG1332|consen 239 -TKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGD-------NKVTLWKENVDGKWEEVGE 296 (299)
T ss_pred -EecCccCcccccccccCCcceEEEEEeccccEEEEecCC-------cEEEEEEeCCCCcEEEccc
Confidence 22334566765 34444443333333445555555554 446666666 79999865
No 115
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=88.15 E-value=31 Score=35.01 Aligned_cols=154 Identities=22% Similarity=0.226 Sum_probs=91.4
Q ss_pred CCCccCcceEEEEECCEEEEEeeCCCCCCcceEEEEECCCCeEEECCCCCCCC------------cceEEEEECCEEEEE
Q 007704 343 PMSSARSYASAAMLNGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTK------------GSLAGATIDNKIFAI 410 (592)
Q Consensus 343 p~p~~R~~~s~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~lp~~r------------~~~~~~~~~~~Iyv~ 410 (592)
.+|-+-.+.+.++.+|.+|---. ..+++.+||+.+.+-.....+|.+. ...-.++-.+-|+|+
T Consensus 64 ~Lp~~~~GtG~vVYngslYY~~~-----~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvI 138 (250)
T PF02191_consen 64 KLPYPWQGTGHVVYNGSLYYNKY-----NSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVI 138 (250)
T ss_pred EEeceeccCCeEEECCcEEEEec-----CCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEE
Confidence 34555567777788888887644 3478999999998755222233222 123455556667777
Q ss_pred ecCCCCcccceEEEEeCCC----CeEEEcccccCcccceEEEEECCEEEEEeccCCCCCCCeeEEEeCCCCeEEEec-cC
Q 007704 411 GGGNGLECFSDVEMLDLDI----GKWIRTRSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHYWTKIA-NM 485 (592)
Q Consensus 411 GG~~~~~~~~~v~~yD~~t----~~W~~i~~~p~~R~~~~a~~~~g~IYV~GG~~~~~~~~~v~~yD~~t~~W~~i~-~~ 485 (592)
=........--+-..|+.+ .+|.. ..+.+ ....+.++-|.||++...+... ..=.++||+.+++=..+. +.
T Consensus 139 Yat~~~~g~ivvskld~~tL~v~~tw~T--~~~k~-~~~naFmvCGvLY~~~s~~~~~-~~I~yafDt~t~~~~~~~i~f 214 (250)
T PF02191_consen 139 YATEDNNGNIVVSKLDPETLSVEQTWNT--SYPKR-SAGNAFMVCGVLYATDSYDTRD-TEIFYAFDTYTGKEEDVSIPF 214 (250)
T ss_pred EecCCCCCcEEEEeeCcccCceEEEEEe--ccCch-hhcceeeEeeEEEEEEECCCCC-cEEEEEEECCCCceeceeeee
Confidence 5433222222344556654 35653 23333 3333566788999998766443 334578999988765442 23
Q ss_pred CCCCceeEEEEE---CCEEEEEe
Q 007704 486 NRRRGCHSLAVL---NGKLYALG 505 (592)
Q Consensus 486 p~~R~~~s~v~~---~~~Lyv~G 505 (592)
+.+-..++++.. +.+||++.
T Consensus 215 ~~~~~~~~~l~YNP~dk~LY~wd 237 (250)
T PF02191_consen 215 PNPYGNISMLSYNPRDKKLYAWD 237 (250)
T ss_pred ccccCceEeeeECCCCCeEEEEE
Confidence 344446677766 67899984
No 116
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=88.09 E-value=47 Score=36.70 Aligned_cols=185 Identities=16% Similarity=0.231 Sum_probs=94.4
Q ss_pred CCEEEEEeeCCCCCCcceEEEEECCCC--eEEECCCCCCCCcceEEEE-ECCEEEEEecCCCCcccceEEEEeCCCCeEE
Q 007704 357 NGELYIFGGGDGNSWHNTVESYSPAND--EWTSRPSLNGTKGSLAGAT-IDNKIFAIGGGNGLECFSDVEMLDLDIGKWI 433 (592)
Q Consensus 357 ~~~Iyv~GG~~~~~~~~~v~~yd~~t~--~W~~l~~lp~~r~~~~~~~-~~~~Iyv~GG~~~~~~~~~v~~yD~~t~~W~ 433 (592)
+++ |++.|..+ ..+.+||...+ .-+.+...+... ++++. ..+++++.|+.+ .++.++|+.+.+-.
T Consensus 214 d~~-~l~s~s~D----~tiriwd~~~~~~~~~~l~gH~~~v--~~~~f~p~g~~i~Sgs~D-----~tvriWd~~~~~~~ 281 (456)
T KOG0266|consen 214 DGS-YLLSGSDD----KTLRIWDLKDDGRNLKTLKGHSTYV--TSVAFSPDGNLLVSGSDD-----GTVRIWDVRTGECV 281 (456)
T ss_pred CCc-EEEEecCC----ceEEEeeccCCCeEEEEecCCCCce--EEEEecCCCCEEEEecCC-----CcEEEEeccCCeEE
Confidence 455 55555444 45788888433 234444333333 23322 255899998866 47888999886543
Q ss_pred EcccccCcccceEEEEECCEEEEEeccCCCCCCCeeEEEeCCCCeEE---EeccCCCCCceeEEEEE--CCEEEEEecCC
Q 007704 434 RTRSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHYWT---KIANMNRRRGCHSLAVL--NGKLYALGGFD 508 (592)
Q Consensus 434 ~i~~~p~~R~~~~a~~~~g~IYV~GG~~~~~~~~~v~~yD~~t~~W~---~i~~~p~~R~~~s~v~~--~~~Lyv~GG~~ 508 (592)
..-..-.......+..-++.+++.+.++ ..+.+||+.++.-. .+.....+. ....+.. +++.++.+.-+
T Consensus 282 ~~l~~hs~~is~~~f~~d~~~l~s~s~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d 355 (456)
T KOG0266|consen 282 RKLKGHSDGISGLAFSPDGNLLVSASYD-----GTIRVWDLETGSKLCLKLLSGAENSA-PVTSVQFSPNGKYLLSASLD 355 (456)
T ss_pred EeeeccCCceEEEEECCCCCEEEEcCCC-----ccEEEEECCCCceeeeecccCCCCCC-ceeEEEECCCCcEEEEecCC
Confidence 3222222222222333367777777654 45788999887743 223223332 2233333 44444443322
Q ss_pred CCCCCCeEEEEeCCCCeEEE-cCCCCC-CCcceEEEEE-CCEEEEEecccCCCccccEEEEEcCC
Q 007704 509 GSAMVPSIEVYDPRLGSWMS-GEPMKL-SRGYLGAAVV-KEAIYVIGGVKNGSEIVDTVERFKEG 570 (592)
Q Consensus 509 ~~~~~~~v~~yD~~t~~W~~-v~~lp~-~R~~~s~~v~-~~~Iyv~GG~~~~~~~~~~v~~Yd~~ 570 (592)
+.+-.||+....-.. ...... .+..+.++.. ++..++.|+.+ ..|++||+.
T Consensus 356 -----~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d------~~v~~~~~~ 409 (456)
T KOG0266|consen 356 -----RTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSED------GSVYVWDSS 409 (456)
T ss_pred -----CeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCC------ceEEEEeCC
Confidence 245566665432211 111111 1444444434 55566656654 348888875
No 117
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=87.69 E-value=6.5 Score=35.23 Aligned_cols=81 Identities=22% Similarity=0.155 Sum_probs=57.4
Q ss_pred EEECCEEEEEeccCCCCCCCeeEEEeCCCCeEEEecc---CCCCCceeEEEEECCEEEEEecCCCCC-CCCeEEEEe-CC
Q 007704 448 AELNGVLYATGGYDGNEYMNSAERFDPREHYWTKIAN---MNRRRGCHSLAVLNGKLYALGGFDGSA-MVPSIEVYD-PR 522 (592)
Q Consensus 448 ~~~~g~IYV~GG~~~~~~~~~v~~yD~~t~~W~~i~~---~p~~R~~~s~v~~~~~Lyv~GG~~~~~-~~~~v~~yD-~~ 522 (592)
..++|.+|-..-. .......+..||.++.+|+.++. .........++.++|+|-++.-..... ..-++|+++ ..
T Consensus 2 icinGvly~~a~~-~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~ 80 (129)
T PF08268_consen 2 ICINGVLYWLAWS-EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYE 80 (129)
T ss_pred EEECcEEEeEEEE-CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeeccc
Confidence 3568888877665 33445778999999999998854 335556677888899998876543321 335788884 56
Q ss_pred CCeEEEc
Q 007704 523 LGSWMSG 529 (592)
Q Consensus 523 t~~W~~v 529 (592)
+..|.+.
T Consensus 81 k~~Wsk~ 87 (129)
T PF08268_consen 81 KQEWSKK 87 (129)
T ss_pred cceEEEE
Confidence 7789875
No 118
>PRK13684 Ycf48-like protein; Provisional
Probab=87.37 E-value=42 Score=35.42 Aligned_cols=172 Identities=14% Similarity=0.165 Sum_probs=87.8
Q ss_pred CCEEEEEeeCCCCCCcceEEEEECCCCeEEECCCCCCCCcceEEEEECCEEEEEecCCCCcccceEEE-EeCCCCeEEEc
Q 007704 357 NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEM-LDLDIGKWIRT 435 (592)
Q Consensus 357 ~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~lp~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~v~~-yD~~t~~W~~i 435 (592)
++.+++.|.. ..+++=+-.-.+|+.+.... .-..+.+....+..|++.|..+ .++. .|....+|+.+
T Consensus 142 ~~~~~~~g~~------G~i~~S~DgG~tW~~~~~~~-~g~~~~i~~~~~g~~v~~g~~G-----~i~~s~~~gg~tW~~~ 209 (334)
T PRK13684 142 PGTAEMATNV------GAIYRTTDGGKNWEALVEDA-AGVVRNLRRSPDGKYVAVSSRG-----NFYSTWEPGQTAWTPH 209 (334)
T ss_pred CCcceeeecc------ceEEEECCCCCCceeCcCCC-cceEEEEEECCCCeEEEEeCCc-----eEEEEcCCCCCeEEEe
Confidence 4456666542 23555555677999875433 2233444444444444433222 2222 24445689887
Q ss_pred ccccCcccceEEEE-ECCEEEEEeccCCCCCCCeeEEEe-C-CCCeEEEeccC-C-CCCceeEEEEE-CCEEEEEecCCC
Q 007704 436 RSMLQKRFALAAAE-LNGVLYATGGYDGNEYMNSAERFD-P-REHYWTKIANM-N-RRRGCHSLAVL-NGKLYALGGFDG 509 (592)
Q Consensus 436 ~~~p~~R~~~~a~~-~~g~IYV~GG~~~~~~~~~v~~yD-~-~t~~W~~i~~~-p-~~R~~~s~v~~-~~~Lyv~GG~~~ 509 (592)
+. +..+.-.+++. -++.++++|.. ...++. . ...+|+.+... . .....++++.. ++.+|+.|...
T Consensus 210 ~~-~~~~~l~~i~~~~~g~~~~vg~~-------G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G- 280 (334)
T PRK13684 210 QR-NSSRRLQSMGFQPDGNLWMLARG-------GQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNG- 280 (334)
T ss_pred eC-CCcccceeeeEcCCCCEEEEecC-------CEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEcCCC-
Confidence 54 33344444444 36778888742 223342 2 23479975421 1 11223334444 66788887531
Q ss_pred CCCCCeEEEEeCCCCeEEEcCC-CCCCCcceEEEEE-CCEEEEEecc
Q 007704 510 SAMVPSIEVYDPRLGSWMSGEP-MKLSRGYLGAAVV-KEAIYVIGGV 554 (592)
Q Consensus 510 ~~~~~~v~~yD~~t~~W~~v~~-lp~~R~~~s~~v~-~~~Iyv~GG~ 554 (592)
.++.-...-.+|+.+.. -..+...+.++.. ++++|+.|..
T Consensus 281 -----~v~~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 322 (334)
T PRK13684 281 -----TLLVSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQR 322 (334)
T ss_pred -----eEEEeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCC
Confidence 23333334468999753 2223344555555 6778887763
No 119
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=87.29 E-value=28 Score=35.93 Aligned_cols=131 Identities=16% Similarity=0.238 Sum_probs=70.8
Q ss_pred ceEEEEECCCCeEEECCCCCCCCcceEEEEECCEEEEEecCCCCcccceEEEEeCCCCeEEEcccccCcccceEEEEECC
Q 007704 373 NTVESYSPANDEWTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNG 452 (592)
Q Consensus 373 ~~v~~yd~~t~~W~~l~~lp~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~~~a~~~~g 452 (592)
..+-.||...+.-... +.....-..++..+..=.+.||.+ ..+-+||..++.=..+..-..+-.+..-. ...
T Consensus 35 gslrlYdv~~~~l~~~--~~~~~plL~c~F~d~~~~~~G~~d-----g~vr~~Dln~~~~~~igth~~~i~ci~~~-~~~ 106 (323)
T KOG1036|consen 35 GSLRLYDVPANSLKLK--FKHGAPLLDCAFADESTIVTGGLD-----GQVRRYDLNTGNEDQIGTHDEGIRCIEYS-YEV 106 (323)
T ss_pred CcEEEEeccchhhhhh--eecCCceeeeeccCCceEEEeccC-----ceEEEEEecCCcceeeccCCCceEEEEee-ccC
Confidence 4677888887733221 111122233444455555667755 46889999988766654432222111111 234
Q ss_pred EEEEEeccCCCCCCCeeEEEeCCCCeEEEeccCCCCCceeEEEEECCEEEEEecCCCCCCCCeEEEEeCCCC
Q 007704 453 VLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLG 524 (592)
Q Consensus 453 ~IYV~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~~s~v~~~~~Lyv~GG~~~~~~~~~v~~yD~~t~ 524 (592)
...|.||++ ..+..+|+.... .......+..-+++-+.+++ +|+|+.+ ..+.+||+.+.
T Consensus 107 ~~vIsgsWD-----~~ik~wD~R~~~--~~~~~d~~kkVy~~~v~g~~-LvVg~~~-----r~v~iyDLRn~ 165 (323)
T KOG1036|consen 107 GCVISGSWD-----KTIKFWDPRNKV--VVGTFDQGKKVYCMDVSGNR-LVVGTSD-----RKVLIYDLRNL 165 (323)
T ss_pred CeEEEcccC-----ccEEEEeccccc--cccccccCceEEEEeccCCE-EEEeecC-----ceEEEEEcccc
Confidence 456778887 467788887621 11222233344455555554 5556543 36888998764
No 120
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=86.24 E-value=51 Score=35.22 Aligned_cols=74 Identities=15% Similarity=0.076 Sum_probs=45.9
Q ss_pred CCEEEEEeeCC----CCCCcceEEEEECCCCeEE-ECCCCCCCCcc------eEEEEECC-EEEEEecCCCCcccceEEE
Q 007704 357 NGELYIFGGGD----GNSWHNTVESYSPANDEWT-SRPSLNGTKGS------LAGATIDN-KIFAIGGGNGLECFSDVEM 424 (592)
Q Consensus 357 ~~~Iyv~GG~~----~~~~~~~v~~yd~~t~~W~-~l~~lp~~r~~------~~~~~~~~-~Iyv~GG~~~~~~~~~v~~ 424 (592)
+..||+.-.+- -+...+.+.+||..+.+-. +++..+.||.. ....+-+| .+||.- ....+.+-+
T Consensus 57 g~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n----~~p~~~V~V 132 (352)
T TIGR02658 57 GSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQ----FSPSPAVGV 132 (352)
T ss_pred CCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEec----CCCCCEEEE
Confidence 56799887721 1334578999999998764 44444454522 22223355 477762 233578999
Q ss_pred EeCCCCeEEE
Q 007704 425 LDLDIGKWIR 434 (592)
Q Consensus 425 yD~~t~~W~~ 434 (592)
.|..+++-..
T Consensus 133 vD~~~~kvv~ 142 (352)
T TIGR02658 133 VDLEGKAFVR 142 (352)
T ss_pred EECCCCcEEE
Confidence 9999887654
No 121
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=85.69 E-value=9.8 Score=41.60 Aligned_cols=87 Identities=14% Similarity=0.092 Sum_probs=45.4
Q ss_pred eEEEeCCCC----eEEEeccCCCCCceeEEEEECCEEEEEecCCCCCCCCeEEEEeCCCCeEEEcCCCCCCCcceEEEEE
Q 007704 469 AERFDPREH----YWTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVV 544 (592)
Q Consensus 469 v~~yD~~t~----~W~~i~~~p~~R~~~s~v~~~~~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~lp~~R~~~s~~v~ 544 (592)
+..||.... .|.+.-..|. .+-++...+..|++.=|++. .+..||.....-+..-....| ..+++..
T Consensus 189 VtlwDv~g~sp~~~~~~~HsAP~--~gicfspsne~l~vsVG~Dk-----ki~~yD~~s~~s~~~l~y~~P--lstvaf~ 259 (673)
T KOG4378|consen 189 VTLWDVQGMSPIFHASEAHSAPC--RGICFSPSNEALLVSVGYDK-----KINIYDIRSQASTDRLTYSHP--LSTVAFS 259 (673)
T ss_pred EEEEeccCCCcccchhhhccCCc--CcceecCCccceEEEecccc-----eEEEeecccccccceeeecCC--cceeeec
Confidence 444554432 2544433333 34455566888999888763 588899875433221111111 1122333
Q ss_pred -CCEEEEEecccCCCccccEEEEEcCC
Q 007704 545 -KEAIYVIGGVKNGSEIVDTVERFKEG 570 (592)
Q Consensus 545 -~~~Iyv~GG~~~~~~~~~~v~~Yd~~ 570 (592)
++.++++|-..+ .++.||+-
T Consensus 260 ~~G~~L~aG~s~G------~~i~YD~R 280 (673)
T KOG4378|consen 260 ECGTYLCAGNSKG------ELIAYDMR 280 (673)
T ss_pred CCceEEEeecCCc------eEEEEecc
Confidence 355555555443 48888873
No 122
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=84.35 E-value=27 Score=34.99 Aligned_cols=143 Identities=25% Similarity=0.355 Sum_probs=84.6
Q ss_pred CCEEEEEeeCCCCCCcceEEEEECCCCeEEECCCCCCCCcceEEEEECCEEEEEecCCCCcccceEEEEeCCCCeEEEcc
Q 007704 357 NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTR 436 (592)
Q Consensus 357 ~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~lp~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~v~~yD~~t~~W~~i~ 436 (592)
+|...+.-|.+ ..+-.+||......+.=.-...-.--+..+.++.-+.-||.+ ..+.++|..|++-.+-
T Consensus 28 dGnY~ltcGsd-----rtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgD-----k~v~vwDV~TGkv~Rr- 96 (307)
T KOG0316|consen 28 DGNYCLTCGSD-----RTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGD-----KAVQVWDVNTGKVDRR- 96 (307)
T ss_pred CCCEEEEcCCC-----ceEEeecccccceeeeecCCCceeeeccccccccccccCCCC-----ceEEEEEcccCeeeee-
Confidence 45555655644 345666766654422200000000012334466666666654 5688999998864221
Q ss_pred cccCcccceEE----EEE--CCEEEEEeccCCCCCCCeeEEEeCCCCeEEEeccCCCCCceeEEEEECCEEEEEecCCCC
Q 007704 437 SMLQKRFALAA----AEL--NGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGS 510 (592)
Q Consensus 437 ~~p~~R~~~~a----~~~--~g~IYV~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~~s~v~~~~~Lyv~GG~~~~ 510 (592)
-.+|.+ +.+ +..+.+-|+++ .++-.+|.+++..+.+.-+...+-+-..+.+.+..++.|-.++.
T Consensus 97 -----~rgH~aqVNtV~fNeesSVv~SgsfD-----~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DGt 166 (307)
T KOG0316|consen 97 -----FRGHLAQVNTVRFNEESSVVASGSFD-----SSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGT 166 (307)
T ss_pred -----cccccceeeEEEecCcceEEEecccc-----ceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCCc
Confidence 122222 223 34577777766 56888999999998888888888888888888888887776653
Q ss_pred CCCCeEEEEeCCCCe
Q 007704 511 AMVPSIEVYDPRLGS 525 (592)
Q Consensus 511 ~~~~~v~~yD~~t~~ 525 (592)
+-.||.+.++
T Consensus 167 -----vRtydiR~G~ 176 (307)
T KOG0316|consen 167 -----VRTYDIRKGT 176 (307)
T ss_pred -----EEEEEeecce
Confidence 4455555443
No 123
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=84.00 E-value=36 Score=34.23 Aligned_cols=192 Identities=18% Similarity=0.242 Sum_probs=95.8
Q ss_pred CCEEEEEe--eCCCCCC--cceEEEEECC-CCeEEECCCCCCC--------CcceEEEEECCEEEEEecCCCCcccceEE
Q 007704 357 NGELYIFG--GGDGNSW--HNTVESYSPA-NDEWTSRPSLNGT--------KGSLAGATIDNKIFAIGGGNGLECFSDVE 423 (592)
Q Consensus 357 ~~~Iyv~G--G~~~~~~--~~~v~~yd~~-t~~W~~l~~lp~~--------r~~~~~~~~~~~Iyv~GG~~~~~~~~~v~ 423 (592)
+++|++|- +...... ..-.+..... -.+|+....++.. -.......-+|++++..-...........
T Consensus 58 ~g~l~l~~~~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~~~~~~~~~~~~i~~~~G~l~~~~~~~~~~~~~~~~ 137 (275)
T PF13088_consen 58 DGRLWLFYSAGSSGGGWSGSRIYYSRSTDGGKTWSEPTDLPPGWFGNFSGPGRGPPIQLPDGRLIAPYYHESGGSFSAFV 137 (275)
T ss_dssp TSEEEEEEEEEETTESCCTCEEEEEEESSTTSS-EEEEEEHHHCCCSCEECSEEEEEEECTTEEEEEEEEESSCEEEEEE
T ss_pred CCCEEEEEEEccCCCCCCceeEEEEEECCCCCCCCCccccccccccceeccceeeeeEecCCCEEEEEeeccccCcceEE
Confidence 88999886 3222111 1111233333 4589776432211 11112334488888772111112233444
Q ss_pred EEeCC-CCeEEEcccccCc-ccceEEEE-E-CCEEEEEeccCCCCCCCeeEEEeCC-CCeEEEec--cCCCCCceeEEEE
Q 007704 424 MLDLD-IGKWIRTRSMLQK-RFALAAAE-L-NGVLYATGGYDGNEYMNSAERFDPR-EHYWTKIA--NMNRRRGCHSLAV 496 (592)
Q Consensus 424 ~yD~~-t~~W~~i~~~p~~-R~~~~a~~-~-~g~IYV~GG~~~~~~~~~v~~yD~~-t~~W~~i~--~~p~~R~~~s~v~ 496 (592)
+|... -.+|+.....+.. .....+.+ . +|.|+++--..... .-...+... ..+|+... .+|.+.....++.
T Consensus 138 ~~S~D~G~tW~~~~~~~~~~~~~e~~~~~~~dG~l~~~~R~~~~~--~~~~~~S~D~G~TWs~~~~~~~~~~~~~~~~~~ 215 (275)
T PF13088_consen 138 YYSDDGGKTWSSGSPIPDGQGECEPSIVELPDGRLLAVFRTEGND--DIYISRSTDGGRTWSPPQPTNLPNPNSSISLVR 215 (275)
T ss_dssp EEESSTTSSEEEEEECECSEEEEEEEEEEETTSEEEEEEEECSST--EEEEEEESSTTSS-EEEEEEECSSCCEEEEEEE
T ss_pred EEeCCCCceeeccccccccCCcceeEEEECCCCcEEEEEEccCCC--cEEEEEECCCCCcCCCceecccCcccCCceEEE
Confidence 45554 4569887665432 33333333 3 67888886543111 333444444 34699864 5566666666666
Q ss_pred E-CCEEEEEecCCCCCCCCeEEEEeCCCCeEEEcCCCCCC----CcceEEEEE-CCEEEE
Q 007704 497 L-NGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLS----RGYLGAAVV-KEAIYV 550 (592)
Q Consensus 497 ~-~~~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~lp~~----R~~~s~~v~-~~~Iyv 550 (592)
+ +++++++.........-.+..-.-...+|.....+... -.|.+++.. +++|||
T Consensus 216 ~~~g~~~~~~~~~~~r~~l~l~~S~D~g~tW~~~~~i~~~~~~~~~Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 216 LSDGRLLLVYNNPDGRSNLSLYVSEDGGKTWSRPKTIDDGPNGDSGYPSLTQLPDGKLYI 275 (275)
T ss_dssp CTTSEEEEEEECSSTSEEEEEEEECTTCEEEEEEEEEEEEE-CCEEEEEEEEEETTEEEE
T ss_pred cCCCCEEEEEECCCCCCceEEEEEeCCCCcCCccEEEeCCCCCcEECCeeEEeCCCcCCC
Confidence 5 67888887732222122233333346789876544332 245556666 568886
No 124
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=83.69 E-value=52 Score=36.65 Aligned_cols=117 Identities=15% Similarity=0.181 Sum_probs=64.7
Q ss_pred EEEEECCEEEEEecCCCCcccceEEEEeCCCCe--EEEcccccCcc-----cceEEEEEC-CEEEEEeccCCCCCCCeeE
Q 007704 399 AGATIDNKIFAIGGGNGLECFSDVEMLDLDIGK--WIRTRSMLQKR-----FALAAAELN-GVLYATGGYDGNEYMNSAE 470 (592)
Q Consensus 399 ~~~~~~~~Iyv~GG~~~~~~~~~v~~yD~~t~~--W~~i~~~p~~R-----~~~~a~~~~-g~IYV~GG~~~~~~~~~v~ 470 (592)
+-++.+++||+.... ..++.+|..|++ |+.-...+..+ .....++.+ +++|+... ...++
T Consensus 56 sPvv~~g~vy~~~~~------g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~------~g~v~ 123 (488)
T cd00216 56 TPLVVDGDMYFTTSH------SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF------DGRLV 123 (488)
T ss_pred CCEEECCEEEEeCCC------CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC------CCeEE
Confidence 345669999986532 478888988764 87532221000 111223446 78887432 24688
Q ss_pred EEeCCCCe--EEEeccCCC-CC--ceeEEEEECCEEEEEecCCCC----CCCCeEEEEeCCCC--eEEE
Q 007704 471 RFDPREHY--WTKIANMNR-RR--GCHSLAVLNGKLYALGGFDGS----AMVPSIEVYDPRLG--SWMS 528 (592)
Q Consensus 471 ~yD~~t~~--W~~i~~~p~-~R--~~~s~v~~~~~Lyv~GG~~~~----~~~~~v~~yD~~t~--~W~~ 528 (592)
.+|.++++ |+.-..... .. ...+.++.++.+|+ |..+.. .....++.+|..+. .|+.
T Consensus 124 AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~v-g~~~~~~~~~~~~g~v~alD~~TG~~~W~~ 191 (488)
T cd00216 124 ALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVII-GSSGAEFFACGVRGALRAYDVETGKLLWRF 191 (488)
T ss_pred EEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEE-eccccccccCCCCcEEEEEECCCCceeeEe
Confidence 99988765 876432221 10 12233445666654 432211 12357899999875 5875
No 125
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=83.49 E-value=48 Score=33.26 Aligned_cols=132 Identities=20% Similarity=0.190 Sum_probs=78.1
Q ss_pred ceEEEEeCCCCeEEEcccccCccc-ceEEEEECCEEEEEeccCCCCCCCeeEEEeCCCCeEEEeccCCCCCceeEEEEEC
Q 007704 420 SDVEMLDLDIGKWIRTRSMLQKRF-ALAAAELNGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVLN 498 (592)
Q Consensus 420 ~~v~~yD~~t~~W~~i~~~p~~R~-~~~a~~~~g~IYV~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~~s~v~~~ 498 (592)
..+-.+||..+.-.+.-.- ..+. .-++...++.=+..||-+ ..+.++|..+++-.+- ...-...--.+.+|
T Consensus 39 rtvrLWNp~rg~liktYsg-hG~EVlD~~~s~Dnskf~s~GgD-----k~v~vwDV~TGkv~Rr--~rgH~aqVNtV~fN 110 (307)
T KOG0316|consen 39 RTVRLWNPLRGALIKTYSG-HGHEVLDAALSSDNSKFASCGGD-----KAVQVWDVNTGKVDRR--FRGHLAQVNTVRFN 110 (307)
T ss_pred ceEEeecccccceeeeecC-CCceeeeccccccccccccCCCC-----ceEEEEEcccCeeeee--cccccceeeEEEec
Confidence 4667777776654433211 1111 111222344444444433 4678899988764221 00000111123443
Q ss_pred --CEEEEEecCCCCCCCCeEEEEeCCCCeEEEcCCCCCCCcceEEEEECCEEEEEecccCCCccccEEEEEcCC
Q 007704 499 --GKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVVKEAIYVIGGVKNGSEIVDTVERFKEG 570 (592)
Q Consensus 499 --~~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~lp~~R~~~s~~v~~~~Iyv~GG~~~~~~~~~~v~~Yd~~ 570 (592)
..+++-|+++ .++-.+|-+.+..+.+.-+...+...+.+.+.++.+|.|..++. +..||+-
T Consensus 111 eesSVv~SgsfD-----~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DGt------vRtydiR 173 (307)
T KOG0316|consen 111 EESSVVASGSFD-----SSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGT------VRTYDIR 173 (307)
T ss_pred CcceEEEecccc-----ceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCCc------EEEEEee
Confidence 4577777765 46888999998888887777788888888888988887877653 8888865
No 126
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=82.51 E-value=15 Score=32.82 Aligned_cols=80 Identities=16% Similarity=0.059 Sum_probs=55.5
Q ss_pred EECCEEEEEecCCCCCCCCeEEEEeCCCCeEEEcCCC---CCCCcceEEEEECCEEEEEecccCCCccccEEEEEcCC--
Q 007704 496 VLNGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPM---KLSRGYLGAAVVKEAIYVIGGVKNGSEIVDTVERFKEG-- 570 (592)
Q Consensus 496 ~~~~~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~l---p~~R~~~s~~v~~~~Iyv~GG~~~~~~~~~~v~~Yd~~-- 570 (592)
.+||-||-..-. .......|..||..+.+|+.+..+ ........++.++|+|-++.-........-++|+.+-.
T Consensus 3 cinGvly~~a~~-~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~k 81 (129)
T PF08268_consen 3 CINGVLYWLAWS-EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYEK 81 (129)
T ss_pred EECcEEEeEEEE-CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeecccc
Confidence 458888877654 233456799999999999987642 33455667788899998876654432234578888633
Q ss_pred CcEEEc
Q 007704 571 QGWEEI 576 (592)
Q Consensus 571 ~~W~~v 576 (592)
..|+..
T Consensus 82 ~~Wsk~ 87 (129)
T PF08268_consen 82 QEWSKK 87 (129)
T ss_pred ceEEEE
Confidence 789875
No 127
>PTZ00421 coronin; Provisional
Probab=82.47 E-value=89 Score=34.99 Aligned_cols=152 Identities=9% Similarity=0.139 Sum_probs=73.7
Q ss_pred CEEEEEeeCCCCCCcceEEEEECCCCeEEECCCCCCCCcceEEE--EECCEEEEEecCCCCcccceEEEEeCCCCeEEE-
Q 007704 358 GELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGA--TIDNKIFAIGGGNGLECFSDVEMLDLDIGKWIR- 434 (592)
Q Consensus 358 ~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~lp~~r~~~~~~--~~~~~Iyv~GG~~~~~~~~~v~~yD~~t~~W~~- 434 (592)
+.+++.||.+ ..+.+||..+.+-... +.........+ ..++.+++.|+.+ ..+.+||+.+++-..
T Consensus 138 ~~iLaSgs~D-----gtVrIWDl~tg~~~~~--l~~h~~~V~sla~spdG~lLatgs~D-----g~IrIwD~rsg~~v~t 205 (493)
T PTZ00421 138 MNVLASAGAD-----MVVNVWDVERGKAVEV--IKCHSDQITSLEWNLDGSLLCTTSKD-----KKLNIIDPRDGTIVSS 205 (493)
T ss_pred CCEEEEEeCC-----CEEEEEECCCCeEEEE--EcCCCCceEEEEEECCCCEEEEecCC-----CEEEEEECCCCcEEEE
Confidence 4577777766 3578888887653221 11111111222 2367888888755 467889998765321
Q ss_pred cccccCcccceEEEEECCEEEEEeccCCCCCCCeeEEEeCCCCe--EEEeccCCCCCceeEEEEE--CCEEEEEecCCCC
Q 007704 435 TRSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHY--WTKIANMNRRRGCHSLAVL--NGKLYALGGFDGS 510 (592)
Q Consensus 435 i~~~p~~R~~~~a~~~~g~IYV~GG~~~~~~~~~v~~yD~~t~~--W~~i~~~p~~R~~~s~v~~--~~~Lyv~GG~~~~ 510 (592)
+......+........++..++.+|.+.. .-..+.+||+.+.. ..... ... .....+..+ ++.+++.||...
T Consensus 206 l~~H~~~~~~~~~w~~~~~~ivt~G~s~s-~Dr~VklWDlr~~~~p~~~~~-~d~-~~~~~~~~~d~d~~~L~lggkgD- 281 (493)
T PTZ00421 206 VEAHASAKSQRCLWAKRKDLIITLGCSKS-QQRQIMLWDTRKMASPYSTVD-LDQ-SSALFIPFFDEDTNLLYIGSKGE- 281 (493)
T ss_pred EecCCCCcceEEEEcCCCCeEEEEecCCC-CCCeEEEEeCCCCCCceeEec-cCC-CCceEEEEEcCCCCEEEEEEeCC-
Confidence 11111111111111123334444454321 12568889987543 11111 111 112223333 556666666421
Q ss_pred CCCCeEEEEeCCCCeEEE
Q 007704 511 AMVPSIEVYDPRLGSWMS 528 (592)
Q Consensus 511 ~~~~~v~~yD~~t~~W~~ 528 (592)
..|..||..++....
T Consensus 282 ---g~Iriwdl~~~~~~~ 296 (493)
T PTZ00421 282 ---GNIRCFELMNERLTF 296 (493)
T ss_pred ---CeEEEEEeeCCceEE
Confidence 347788887766544
No 128
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=82.27 E-value=30 Score=39.11 Aligned_cols=117 Identities=17% Similarity=0.259 Sum_probs=67.2
Q ss_pred EEEECCEEEEEecCCCCcccceEEEEeCCCC--eEEEcccccCc--------ccceEEEEECCEEEEEeccCCCCCCCee
Q 007704 400 GATIDNKIFAIGGGNGLECFSDVEMLDLDIG--KWIRTRSMLQK--------RFALAAAELNGVLYATGGYDGNEYMNSA 469 (592)
Q Consensus 400 ~~~~~~~Iyv~GG~~~~~~~~~v~~yD~~t~--~W~~i~~~p~~--------R~~~~a~~~~g~IYV~GG~~~~~~~~~v 469 (592)
-++.++.||+... ...++.+|..|+ .|+.-...+.. ......++.++++|+... + ..+
T Consensus 65 Pvv~~g~vyv~s~------~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~-d-----g~l 132 (527)
T TIGR03075 65 PLVVDGVMYVTTS------YSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL-D-----ARL 132 (527)
T ss_pred CEEECCEEEEECC------CCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC-C-----CEE
Confidence 3456899998653 236888898876 47654322211 111224566888887432 2 468
Q ss_pred EEEeCCCCe--EEEec-cCCCC-CceeEEEEECCEEEEEecCCCCCCCCeEEEEeCCCCe--EEE
Q 007704 470 ERFDPREHY--WTKIA-NMNRR-RGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGS--WMS 528 (592)
Q Consensus 470 ~~yD~~t~~--W~~i~-~~p~~-R~~~s~v~~~~~Lyv~GG~~~~~~~~~v~~yD~~t~~--W~~ 528 (592)
+.+|.++++ |+.-. ..... ....+-++.+++||+-...........+..||.++.+ |+.
T Consensus 133 ~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 133 VALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred EEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEec
Confidence 999998876 87542 22111 1223345568887774322111233568899988764 764
No 129
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=81.83 E-value=68 Score=33.51 Aligned_cols=184 Identities=13% Similarity=0.147 Sum_probs=81.0
Q ss_pred cCcceEEEEE-CCEEEEEeeCCCCCCcceEEEEECCCCeEEECCCCCCCCcceEEEE-ECCEEEEEecCCCCcccceEEE
Q 007704 347 ARSYASAAML-NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGAT-IDNKIFAIGGGNGLECFSDVEM 424 (592)
Q Consensus 347 ~R~~~s~v~~-~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~lp~~r~~~~~~~-~~~~Iyv~GG~~~~~~~~~v~~ 424 (592)
|-..+.+..+ ++.++++|.. ..+|+=.-.-.+|+.+..-.. -.-..+.. -+++++++|... +-+-.
T Consensus 103 pgs~~~i~~l~~~~~~l~~~~------G~iy~T~DgG~tW~~~~~~~~-gs~~~~~r~~dG~~vavs~~G-----~~~~s 170 (302)
T PF14870_consen 103 PGSPFGITALGDGSAELAGDR------GAIYRTTDGGKTWQAVVSETS-GSINDITRSSDGRYVAVSSRG-----NFYSS 170 (302)
T ss_dssp SS-EEEEEEEETTEEEEEETT--------EEEESSTTSSEEEEE-S-----EEEEEE-TTS-EEEEETTS-----SEEEE
T ss_pred CCCeeEEEEcCCCcEEEEcCC------CcEEEeCCCCCCeeEcccCCc-ceeEeEEECCCCcEEEEECcc-----cEEEE
Confidence 3344444544 6677777643 345665556779988743222 11222223 367766666422 12234
Q ss_pred EeCCCCeEEEcccccCcccceEEEEECCEEEEEeccCCCCCCCeeEEEe--CCCCeEEEec-cCCCCCceeEEEEE--CC
Q 007704 425 LDLDIGKWIRTRSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAERFD--PREHYWTKIA-NMNRRRGCHSLAVL--NG 499 (592)
Q Consensus 425 yD~~t~~W~~i~~~p~~R~~~~a~~~~g~IYV~GG~~~~~~~~~v~~yD--~~t~~W~~i~-~~p~~R~~~s~v~~--~~ 499 (592)
.|+-...|++.......|....+..-++.+++++ ..+ .+..=| -...+|.+.- +......+.--+.+ ++
T Consensus 171 ~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg-----~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~ 244 (302)
T PF14870_consen 171 WDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGG-----QIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPN 244 (302)
T ss_dssp E-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTT-----EEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS
T ss_pred ecCCCccceEEccCccceehhceecCCCCEEEEe-CCc-----EEEEccCCCCccccccccCCcccCceeeEEEEecCCC
Confidence 6888888987765544444444444467777764 211 122222 2345677632 22233333333334 68
Q ss_pred EEEEEecCCCCCCCCeEEEEeCCCCeEEEcCCC-CCCCcceEEEE-ECCEEEEEecc
Q 007704 500 KLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPM-KLSRGYLGAAV-VKEAIYVIGGV 554 (592)
Q Consensus 500 ~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~l-p~~R~~~s~~v-~~~~Iyv~GG~ 554 (592)
.+++.||.. .+++=.-.-.+|++.... +.+--...+.. -.++.+|+|-.
T Consensus 245 ~~wa~gg~G------~l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~ 295 (302)
T PF14870_consen 245 EIWAVGGSG------TLLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQD 295 (302)
T ss_dssp -EEEEESTT-------EEEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-ST
T ss_pred CEEEEeCCc------cEEEeCCCCccceECccccCCCCceEEEEEcCCCceEEECCC
Confidence 899999843 344444455689997532 22322223333 35799999863
No 130
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=81.69 E-value=71 Score=33.34 Aligned_cols=195 Identities=19% Similarity=0.262 Sum_probs=87.9
Q ss_pred EEEEECCEEEEEeeCCCCCCcceEEEEECCCCeEEECCC-CCCCCcceEEEEE-CCEEEEEecCCCCcccceEEEEeCCC
Q 007704 352 SAAMLNGELYIFGGGDGNSWHNTVESYSPANDEWTSRPS-LNGTKGSLAGATI-DNKIFAIGGGNGLECFSDVEMLDLDI 429 (592)
Q Consensus 352 s~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~-lp~~r~~~~~~~~-~~~Iyv~GG~~~~~~~~~v~~yD~~t 429 (592)
++...++..|++|... -++.-.-.-.+|++++. .+.|-..+.+..+ ++.++++|.. ..++.=.-.-
T Consensus 66 ~I~f~~~~g~ivG~~g------~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~------G~iy~T~DgG 133 (302)
T PF14870_consen 66 SISFDGNEGWIVGEPG------LLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDR------GAIYRTTDGG 133 (302)
T ss_dssp EEEEETTEEEEEEETT------EEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT--------EEEESSTT
T ss_pred EEEecCCceEEEcCCc------eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCC------CcEEEeCCCC
Confidence 3334588899887522 24444446679999852 2333344444444 5677777642 2444444456
Q ss_pred CeEEEcccccCcccceEEEEE-CCEEEEEeccCCCCCCCeeEEEeCCCCeEEEeccCCCCCceeEEEEE-CCEEEEEecC
Q 007704 430 GKWIRTRSMLQKRFALAAAEL-NGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL-NGKLYALGGF 507 (592)
Q Consensus 430 ~~W~~i~~~p~~R~~~~a~~~-~g~IYV~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~~s~v~~-~~~Lyv~GG~ 507 (592)
.+|+.+..-...- -..+... ++++++++ ..+. -....|+-...|+........| -.+|..- ++.|+++. .
T Consensus 134 ~tW~~~~~~~~gs-~~~~~r~~dG~~vavs-~~G~----~~~s~~~G~~~w~~~~r~~~~r-iq~~gf~~~~~lw~~~-~ 205 (302)
T PF14870_consen 134 KTWQAVVSETSGS-INDITRSSDGRYVAVS-SRGN----FYSSWDPGQTTWQPHNRNSSRR-IQSMGFSPDGNLWMLA-R 205 (302)
T ss_dssp SSEEEEE-S-----EEEEEE-TTS-EEEEE-TTSS----EEEEE-TT-SS-EEEE--SSS--EEEEEE-TTS-EEEEE-T
T ss_pred CCeeEcccCCcce-eEeEEECCCCcEEEEE-Cccc----EEEEecCCCccceEEccCccce-ehhceecCCCCEEEEe-C
Confidence 6898765322221 1222223 55655554 3222 2235678888899876554444 3344444 77888865 2
Q ss_pred CCCCCCCeEEEEe--CCCCeEEEcC-CCCCCCcc-eEEEEE-CCEEEEEecccCCCccccEEEEEcCC-CcEEEccc
Q 007704 508 DGSAMVPSIEVYD--PRLGSWMSGE-PMKLSRGY-LGAAVV-KEAIYVIGGVKNGSEIVDTVERFKEG-QGWEEINS 578 (592)
Q Consensus 508 ~~~~~~~~v~~yD--~~t~~W~~v~-~lp~~R~~-~s~~v~-~~~Iyv~GG~~~~~~~~~~v~~Yd~~-~~W~~v~~ 578 (592)
.+ .+..=+ ....+|.+-. +......+ ..++.- ++.+++.||.. .+++=.-. .+|.+.+.
T Consensus 206 Gg-----~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G-------~l~~S~DgGktW~~~~~ 270 (302)
T PF14870_consen 206 GG-----QIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG-------TLLVSTDGGKTWQKDRV 270 (302)
T ss_dssp TT-----EEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT--------EEEESSTTSS-EE-GG
T ss_pred Cc-----EEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCc-------cEEEeCCCCccceECcc
Confidence 22 233333 3445677732 22222222 333433 57899988852 35555555 89998754
No 131
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=80.60 E-value=1.5e+02 Score=36.50 Aligned_cols=146 Identities=11% Similarity=0.081 Sum_probs=80.6
Q ss_pred CCEEEEEecCCCCcccceEEEEeCCCCeEEEcccc----------cC-cc-cc-eEEEEE--CCEEEEEeccCCCCCCCe
Q 007704 404 DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSM----------LQ-KR-FA-LAAAEL--NGVLYATGGYDGNEYMNS 468 (592)
Q Consensus 404 ~~~Iyv~GG~~~~~~~~~v~~yD~~t~~W~~i~~~----------p~-~R-~~-~~a~~~--~g~IYV~GG~~~~~~~~~ 468 (592)
++.|||.... .+.+++||+.++.......- .. .. .. ..+++. ++.|||....+ +.
T Consensus 694 ~g~LyVad~~-----~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n-----~~ 763 (1057)
T PLN02919 694 NEKVYIAMAG-----QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSES-----SS 763 (1057)
T ss_pred CCeEEEEECC-----CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCC-----Ce
Confidence 6788887542 25689999887765433210 00 00 11 122222 34699876543 67
Q ss_pred eEEEeCCCCeEEEec--c--CCC----------------CCceeEEEEE-CCEEEEEecCCCCCCCCeEEEEeCCCCeEE
Q 007704 469 AERFDPREHYWTKIA--N--MNR----------------RRGCHSLAVL-NGKLYALGGFDGSAMVPSIEVYDPRLGSWM 527 (592)
Q Consensus 469 v~~yD~~t~~W~~i~--~--~p~----------------~R~~~s~v~~-~~~Lyv~GG~~~~~~~~~v~~yD~~t~~W~ 527 (592)
+.+||+.++....+. . .+. -..-.+++.- ++.|||....+ +.|.+||+.++...
T Consensus 764 Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N-----~rIrviD~~tg~v~ 838 (1057)
T PLN02919 764 IRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYN-----HKIKKLDPATKRVT 838 (1057)
T ss_pred EEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCC-----CEEEEEECCCCeEE
Confidence 899999876533221 0 000 0011123332 67899986543 56999999988877
Q ss_pred EcCCCCC----------C--CcceEEEEE-CCEEEEEecccCCCccccEEEEEcCC
Q 007704 528 SGEPMKL----------S--RGYLGAAVV-KEAIYVIGGVKNGSEIVDTVERFKEG 570 (592)
Q Consensus 528 ~v~~lp~----------~--R~~~s~~v~-~~~Iyv~GG~~~~~~~~~~v~~Yd~~ 570 (592)
.+..... . ...+.+++- ++++||.-..+ +.|.++|+.
T Consensus 839 tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~N------n~Irvid~~ 888 (1057)
T PLN02919 839 TLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNN------SLIRYLDLN 888 (1057)
T ss_pred EEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCC------CEEEEEECC
Confidence 6542110 0 112333433 67898876543 568888876
No 132
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=80.32 E-value=78 Score=32.90 Aligned_cols=127 Identities=15% Similarity=0.123 Sum_probs=73.6
Q ss_pred ccceEEEEeCCCCe----EEEcccccCcccceEEE----EECCEEEEEeccCCCCCCCeeEEEeCCCCeEEEeccCCCCC
Q 007704 418 CFSDVEMLDLDIGK----WIRTRSMLQKRFALAAA----ELNGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRR 489 (592)
Q Consensus 418 ~~~~v~~yD~~t~~----W~~i~~~p~~R~~~~a~----~~~g~IYV~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R 489 (592)
-++.+..||.++++ |.+--.-+..-.+-.+- .+++.+|+.-+ ++. ..-.+|..|.+++.-+++..-|...
T Consensus 76 KYSHVH~yd~e~~~VrLLWkesih~~~~WaGEVSdIlYdP~~D~LLlAR~-DGh-~nLGvy~ldr~~g~~~~L~~~ps~K 153 (339)
T PF09910_consen 76 KYSHVHEYDTENDSVRLLWKESIHDKTKWAGEVSDILYDPYEDRLLLARA-DGH-ANLGVYSLDRRTGKAEKLSSNPSLK 153 (339)
T ss_pred ccceEEEEEcCCCeEEEEEecccCCccccccchhheeeCCCcCEEEEEec-CCc-ceeeeEEEcccCCceeeccCCCCcC
Confidence 45789999999887 54322222111111111 12677777543 232 2346888899999888887666664
Q ss_pred ceeEEEEECCEEEEEecCCCCCCCCeEEEEeCCCCeE--EEcCCC-------CCCCcceEEEEECCEEEEE
Q 007704 490 GCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGSW--MSGEPM-------KLSRGYLGAAVVKEAIYVI 551 (592)
Q Consensus 490 ~~~s~v~~~~~Lyv~GG~~~~~~~~~v~~yD~~t~~W--~~v~~l-------p~~R~~~s~~v~~~~Iyv~ 551 (592)
.+.+++...|-+ .....-.+.+.+||+.+++| .....- ...|....++.+.+++|.|
T Consensus 154 ---G~~~~D~a~F~i--~~~~~g~~~i~~~Dli~~~~~~e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~faF 219 (339)
T PF09910_consen 154 ---GTLVHDYACFGI--NNFHKGVSGIHCLDLISGKWVIESFDVSLSVDGGPVIRPELGAMASAYNRLFAF 219 (339)
T ss_pred ---ceEeeeeEEEec--cccccCCceEEEEEccCCeEEEEecccccCCCCCceEeeccccEEEEeeeEEEE
Confidence 244445544433 33334567899999999999 332210 1113344566677777765
No 133
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=79.81 E-value=80 Score=32.72 Aligned_cols=190 Identities=12% Similarity=0.086 Sum_probs=86.6
Q ss_pred ceEEEEECCCCe-E-EECCCCCCCCcceEEEEE-CC-EEEEEecCCCCcccceEEEEeCCCC-eEEEcc----cccCccc
Q 007704 373 NTVESYSPANDE-W-TSRPSLNGTKGSLAGATI-DN-KIFAIGGGNGLECFSDVEMLDLDIG-KWIRTR----SMLQKRF 443 (592)
Q Consensus 373 ~~v~~yd~~t~~-W-~~l~~lp~~r~~~~~~~~-~~-~Iyv~GG~~~~~~~~~v~~yD~~t~-~W~~i~----~~p~~R~ 443 (592)
+.+.+||..++. . ..+...+.....|.++.. ++ .+|+..- ..+.+.+||+.+. ...... ..+....
T Consensus 102 ~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~-----~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~ 176 (330)
T PRK11028 102 NCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCL-----KEDRIRLFTLSDDGHLVAQEPAEVTTVEGAG 176 (330)
T ss_pred CeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeC-----CCCEEEEEEECCCCcccccCCCceecCCCCC
Confidence 567777775321 1 122222222233444333 44 5666542 2357899998763 222110 1111111
Q ss_pred ceEEEEE--CCEEEEEeccCCCCCCCeeEEEeCC--CCeEEE---eccCC----CCCceeEEEEE-C-CEEEEEecCCCC
Q 007704 444 ALAAAEL--NGVLYATGGYDGNEYMNSAERFDPR--EHYWTK---IANMN----RRRGCHSLAVL-N-GKLYALGGFDGS 510 (592)
Q Consensus 444 ~~~a~~~--~g~IYV~GG~~~~~~~~~v~~yD~~--t~~W~~---i~~~p----~~R~~~s~v~~-~-~~Lyv~GG~~~~ 510 (592)
-+.++.. +..+|+.... .+++.+||.. +++++. +..+| .+|....+... + ..+|+...
T Consensus 177 p~~~~~~pdg~~lyv~~~~-----~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~---- 247 (330)
T PRK11028 177 PRHMVFHPNQQYAYCVNEL-----NSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDR---- 247 (330)
T ss_pred CceEEECCCCCEEEEEecC-----CCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecC----
Confidence 1122333 3467886432 2567777765 444433 33332 23433223333 3 45777522
Q ss_pred CCCCeEEEEeC--CCCeEEEcCCCCCCCcceEEEEE--CCEEEEEecccCCCccccEEEEEc--CC-CcEEEccccCCCC
Q 007704 511 AMVPSIEVYDP--RLGSWMSGEPMKLSRGYLGAAVV--KEAIYVIGGVKNGSEIVDTVERFK--EG-QGWEEINSRAIGK 583 (592)
Q Consensus 511 ~~~~~v~~yD~--~t~~W~~v~~lp~~R~~~s~~v~--~~~Iyv~GG~~~~~~~~~~v~~Yd--~~-~~W~~v~~~p~~~ 583 (592)
..+.+.+|+. ....++.+...+..-....+... +..||+.+..+ +.|.+|+ .. ..+..+...+.+.
T Consensus 248 -~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~------~~v~v~~~~~~~g~l~~~~~~~~g~ 320 (330)
T PRK11028 248 -TASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKS------HHISVYEIDGETGLLTELGRYAVGQ 320 (330)
T ss_pred -CCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccC------CcEEEEEEcCCCCcEEEccccccCC
Confidence 1245666655 44456555433322111122222 44677755322 4466665 34 5687776665554
No 134
>PRK04043 tolB translocation protein TolB; Provisional
Probab=79.42 E-value=1e+02 Score=33.70 Aligned_cols=149 Identities=13% Similarity=0.023 Sum_probs=82.2
Q ss_pred ceEEEEeCCCCeEEEcccccCcccceEEEEECC-EEEEEeccCCCCCCCeeEEEeCCCCeEEEeccCCCCCceeEEEEEC
Q 007704 420 SDVEMLDLDIGKWIRTRSMLQKRFALAAAELNG-VLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVLN 498 (592)
Q Consensus 420 ~~v~~yD~~t~~W~~i~~~p~~R~~~~a~~~~g-~IYV~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~~s~v~~~ 498 (592)
.++|++|+.+++=+.+...+..-.... ..-+| +|++.-...+ ..++|.+|+.++.++++...+..-.......-+
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~~g~~~~~~-~SPDG~~la~~~~~~g---~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG 288 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASSQGMLVVSD-VSKDGSKLLLTMAPKG---QPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDD 288 (419)
T ss_pred CEEEEEECCCCcEEEEecCCCcEEeeE-ECCCCCEEEEEEccCC---CcEEEEEECCCCcEEEcccCCCccCccEECCCC
Confidence 489999999987766654222111111 12244 5555433222 368999999999999886544311111111114
Q ss_pred CEEEEEecCCCCCCCCeEEEEeCCCCeEEEcCCCCCCCcceEEEEECCEEEEEecccCCCc---cccEEEEEcCC-CcEE
Q 007704 499 GKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVVKEAIYVIGGVKNGSE---IVDTVERFKEG-QGWE 574 (592)
Q Consensus 499 ~~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~lp~~R~~~s~~v~~~~Iyv~GG~~~~~~---~~~~v~~Yd~~-~~W~ 574 (592)
.+||......+ ..+++++|..+...+++..- +.... ...-+++-+++-....... ....++++|++ ..+.
T Consensus 289 ~~I~F~Sdr~g---~~~Iy~~dl~~g~~~rlt~~--g~~~~-~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~ 362 (419)
T PRK04043 289 KRIVFVSDRLG---YPNIFMKKLNSGSVEQVVFH--GKNNS-SVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR 362 (419)
T ss_pred CEEEEEECCCC---CceEEEEECCCCCeEeCccC--CCcCc-eECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE
Confidence 45666654322 35899999999888776432 11111 2222444333333222111 23578999987 7787
Q ss_pred Eccc
Q 007704 575 EINS 578 (592)
Q Consensus 575 ~v~~ 578 (592)
.+..
T Consensus 363 ~LT~ 366 (419)
T PRK04043 363 RLTA 366 (419)
T ss_pred ECCC
Confidence 7744
No 135
>PRK10115 protease 2; Provisional
Probab=79.32 E-value=1.4e+02 Score=35.07 Aligned_cols=214 Identities=9% Similarity=-0.008 Sum_probs=109.9
Q ss_pred eEEEEE-CCEEEEEeeCCCC-CCcceEEEEECCCCeE--EECCCCCCCCcceEEEEE-CCEEEEEecCCCCcccceEEEE
Q 007704 351 ASAAML-NGELYIFGGGDGN-SWHNTVESYSPANDEW--TSRPSLNGTKGSLAGATI-DNKIFAIGGGNGLECFSDVEML 425 (592)
Q Consensus 351 ~s~v~~-~~~Iyv~GG~~~~-~~~~~v~~yd~~t~~W--~~l~~lp~~r~~~~~~~~-~~~Iyv~GG~~~~~~~~~v~~y 425 (592)
.+++.. +++-+++...+.. ....++|++++.+..- ..+-.-+........... +++..++....+ ..+.+++|
T Consensus 175 ~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~--~~~~~~l~ 252 (686)
T PRK10115 175 PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASA--TTSEVLLL 252 (686)
T ss_pred eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECC--ccccEEEE
Confidence 334444 5555555554332 2447899999998732 222111112222222223 555444544322 33678888
Q ss_pred eC--CCCeEEEcccccCcccceEEEEECCEEEEEeccCCCCCCCeeEEEeCC-CCeEEEeccCCCCCceeEEEEECCEEE
Q 007704 426 DL--DIGKWIRTRSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAERFDPR-EHYWTKIANMNRRRGCHSLAVLNGKLY 502 (592)
Q Consensus 426 D~--~t~~W~~i~~~p~~R~~~~a~~~~g~IYV~GG~~~~~~~~~v~~yD~~-t~~W~~i~~~p~~R~~~s~v~~~~~Ly 502 (592)
+. .+..|..+-+.+.. ........++.+|+.--.+.. ...+...++. ...|+.+-+....+.--.+...++.|+
T Consensus 253 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ly~~tn~~~~--~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~l~ 329 (686)
T PRK10115 253 DAELADAEPFVFLPRRKD-HEYSLDHYQHRFYLRSNRHGK--NFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTDWLV 329 (686)
T ss_pred ECcCCCCCceEEEECCCC-CEEEEEeCCCEEEEEEcCCCC--CceEEEecCCCcccCeEEECCCCCCEEEEEEEECCEEE
Confidence 83 33444333222221 122333456888887644322 2446777776 578988755433333334445578877
Q ss_pred EEecCCCCCCCCeEEEEeCCCCeEEEcCCCCCCCcceEEEEE----C-CEE-EEEecccCCCccccEEEEEcCC-CcEEE
Q 007704 503 ALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVV----K-EAI-YVIGGVKNGSEIVDTVERFKEG-QGWEE 575 (592)
Q Consensus 503 v~GG~~~~~~~~~v~~yD~~t~~W~~v~~lp~~R~~~s~~v~----~-~~I-yv~GG~~~~~~~~~~v~~Yd~~-~~W~~ 575 (592)
+..-.++ ...++++|..+.....+. ++.+... +.... + +.+ +.+.+.... .+++.||+. .+|..
T Consensus 330 ~~~~~~g---~~~l~~~~~~~~~~~~l~-~~~~~~~-~~~~~~~~~~~~~~~~~~ss~~~P----~~~y~~d~~~~~~~~ 400 (686)
T PRK10115 330 VEERQRG---LTSLRQINRKTREVIGIA-FDDPAYV-TWIAYNPEPETSRLRYGYSSMTTP----DTLFELDMDTGERRV 400 (686)
T ss_pred EEEEeCC---EEEEEEEcCCCCceEEec-CCCCceE-eeecccCCCCCceEEEEEecCCCC----CEEEEEECCCCcEEE
Confidence 7754332 345888887666555543 1222222 21111 1 333 334444333 779999988 78887
Q ss_pred ccc
Q 007704 576 INS 578 (592)
Q Consensus 576 v~~ 578 (592)
+..
T Consensus 401 l~~ 403 (686)
T PRK10115 401 LKQ 403 (686)
T ss_pred EEe
Confidence 754
No 136
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=78.97 E-value=81 Score=33.94 Aligned_cols=96 Identities=11% Similarity=0.152 Sum_probs=55.4
Q ss_pred CCeEEEcccccCcccceEEEEECCEEEEEeccCCCCCCCeeEEEeCCCCeEEEeccC-----CCC--CceeEEEEECCEE
Q 007704 429 IGKWIRTRSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHYWTKIANM-----NRR--RGCHSLAVLNGKL 501 (592)
Q Consensus 429 t~~W~~i~~~p~~R~~~~a~~~~g~IYV~GG~~~~~~~~~v~~yD~~t~~W~~i~~~-----p~~--R~~~s~v~~~~~L 501 (592)
.+.|+.+.. .....--++.++|++|++.- ...++.+|..- .=.++++. ..+ +...-.|...|+|
T Consensus 189 ~~~Wt~l~~--~~~~~~DIi~~kGkfYAvD~------~G~l~~i~~~l-~i~~v~~~i~~~~~~g~~~~~~yLVEs~GdL 259 (373)
T PLN03215 189 GNVLKALKQ--MGYHFSDIIVHKGQTYALDS------IGIVYWINSDL-EFSRFGTSLDENITDGCWTGDRRFVECCGEL 259 (373)
T ss_pred CCeeeEccC--CCceeeEEEEECCEEEEEcC------CCeEEEEecCC-ceeeecceecccccCCcccCceeEEEECCEE
Confidence 489999864 22234567788999999832 23456666321 11222211 111 1223356667889
Q ss_pred EEEecCCCCC------------CCC--eEEEEeCCCCeEEEcCCCC
Q 007704 502 YALGGFDGSA------------MVP--SIEVYDPRLGSWMSGEPMK 533 (592)
Q Consensus 502 yv~GG~~~~~------------~~~--~v~~yD~~t~~W~~v~~lp 533 (592)
|++..+.... ... .|+..|.+..+|.++..+.
T Consensus 260 LmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLg 305 (373)
T PLN03215 260 YIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLG 305 (373)
T ss_pred EEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecccC
Confidence 9998742110 112 3466688889999998764
No 137
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=78.90 E-value=79 Score=32.16 Aligned_cols=207 Identities=18% Similarity=0.190 Sum_probs=96.7
Q ss_pred cceEEEEECCEEEEEeeCC--CCCCcceEEEEE---CCCCeEE--ECCCCCC-------CCcceEEEEECCEEEEEecCC
Q 007704 349 SYASAAMLNGELYIFGGGD--GNSWHNTVESYS---PANDEWT--SRPSLNG-------TKGSLAGATIDNKIFAIGGGN 414 (592)
Q Consensus 349 ~~~s~v~~~~~Iyv~GG~~--~~~~~~~v~~yd---~~t~~W~--~l~~lp~-------~r~~~~~~~~~~~Iyv~GG~~ 414 (592)
.+.++.++++++|.+=-.. ....+...+.|+ ...+.|+ .++..+. ...-|+.|.+++.=|.+|=..
T Consensus 76 HCmSMGv~~NRLfa~iEtR~~a~~km~~~~Lw~RpMF~~spW~~teL~~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHn 155 (367)
T PF12217_consen 76 HCMSMGVVGNRLFAVIETRTVASNKMVRAELWSRPMFHDSPWRITELGTIASFTSAGVAVTELHSFATIDDNQFAVGYHN 155 (367)
T ss_dssp E-B-EEEETTEEEEEEEEEETTT--EEEEEEEEEE-STTS--EEEEEES-TT--------SEEEEEEE-SSS-EEEEEEE
T ss_pred eeeeeeeecceeeEEEeehhhhhhhhhhhhhhcccccccCCceeeecccccccccccceeeeeeeeeEecCCceeEEecc
Confidence 3557778899999765411 223333444444 3567785 3454443 345688899998888988544
Q ss_pred CCcccceEEE--EeC-----CCCeEEEccc-ccCcccceEEEEECCEEEEEe-ccCCCCCCCeeEEEeCCCCeEEEeccC
Q 007704 415 GLECFSDVEM--LDL-----DIGKWIRTRS-MLQKRFALAAAELNGVLYATG-GYDGNEYMNSAERFDPREHYWTKIANM 485 (592)
Q Consensus 415 ~~~~~~~v~~--yD~-----~t~~W~~i~~-~p~~R~~~~a~~~~g~IYV~G-G~~~~~~~~~v~~yD~~t~~W~~i~~~ 485 (592)
+......+-+ |.. ..-.=+.+++ ....-..++.-.++|.+|+.- |......-+.+.+-+.....|+.+.-.
T Consensus 156 GD~sPRe~G~~yfs~~~~sp~~~vrr~i~sey~~~AsEPCvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~slrfp 235 (367)
T PF12217_consen 156 GDVSPRELGFLYFSDAFASPGVFVRRIIPSEYERNASEPCVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSLRFP 235 (367)
T ss_dssp -SSSS-EEEEEEETTTTT-TT--EEEE--GGG-TTEEEEEEEEETTEEEEEEEES-TTS---EEEEESSTTSS-EEEE-T
T ss_pred CCCCcceeeEEEecccccCCcceeeeechhhhccccccchhhhhCCEEEEEEcCcCCCCCcceeeeecccCCchhhcccc
Confidence 3333333322 211 1111123332 223335566777899999886 444445556788888888889877432
Q ss_pred C-CCCceeEEEEECCEEEEEecCCCC----------C---CCCeEEE-------EeCCCCeEEEcCC-------CCCCCc
Q 007704 486 N-RRRGCHSLAVLNGKLYALGGFDGS----------A---MVPSIEV-------YDPRLGSWMSGEP-------MKLSRG 537 (592)
Q Consensus 486 p-~~R~~~s~v~~~~~Lyv~GG~~~~----------~---~~~~v~~-------yD~~t~~W~~v~~-------lp~~R~ 537 (592)
. .-....-.+..++.||+||-.... . ....++. +.++.-+|..+.+ .....+
T Consensus 236 ~nvHhtnlPFakvgD~l~mFgsERA~~EWE~G~~D~RY~~~yPRtF~~k~nv~~W~~d~~ew~nitdqIYqG~ivNSavG 315 (367)
T PF12217_consen 236 NNVHHTNLPFAKVGDVLYMFGSERAENEWEGGEPDNRYRANYPRTFMLKVNVSDWSLDDVEWVNITDQIYQGGIVNSAVG 315 (367)
T ss_dssp T---SS---EEEETTEEEEEEE-SSTT-SSTT-----SS-B--EEEEEEEETTT---TT---EEEEE-BB--SSS---SE
T ss_pred ccccccCCCceeeCCEEEEEeccccccccccCCCcccccccCCceEEEEeecccCCccceEEEEeecceecccccccccc
Confidence 1 122223345569999999863210 0 1111222 2344445665532 223334
Q ss_pred ceEEEEECCEEE-EEeccc
Q 007704 538 YLGAAVVKEAIY-VIGGVK 555 (592)
Q Consensus 538 ~~s~~v~~~~Iy-v~GG~~ 555 (592)
..++++-++-|| +|||.+
T Consensus 316 VGSv~~KD~~lyy~FGgED 334 (367)
T PF12217_consen 316 VGSVVVKDGWLYYIFGGED 334 (367)
T ss_dssp EEEEEEETTEEEEEEEEB-
T ss_pred ceeEEEECCEEEEEecCcc
Confidence 445666678765 789864
No 138
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=78.41 E-value=39 Score=36.77 Aligned_cols=59 Identities=12% Similarity=0.094 Sum_probs=33.4
Q ss_pred ceEEEEECCEEEEEeeCCCCCCcceEEEEECCCCeEEECCCCCCCCcce-EEE--EECCEEEEEecCCC
Q 007704 350 YASAAMLNGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSL-AGA--TIDNKIFAIGGGNG 415 (592)
Q Consensus 350 ~~s~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~lp~~r~~~-~~~--~~~~~Iyv~GG~~~ 415 (592)
-++.+..+.-.||+||... .++|.+...++..-.. + .+.+.. ++. +.|+..++-||.|+
T Consensus 84 v~al~s~n~G~~l~ag~i~----g~lYlWelssG~LL~v--~-~aHYQ~ITcL~fs~dgs~iiTgskDg 145 (476)
T KOG0646|consen 84 VHALASSNLGYFLLAGTIS----GNLYLWELSSGILLNV--L-SAHYQSITCLKFSDDGSHIITGSKDG 145 (476)
T ss_pred eeeeecCCCceEEEeeccc----CcEEEEEeccccHHHH--H-HhhccceeEEEEeCCCcEEEecCCCc
Confidence 4566666777788888332 3578888777643221 1 112221 111 22778888888665
No 139
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=78.40 E-value=97 Score=32.91 Aligned_cols=195 Identities=16% Similarity=0.230 Sum_probs=92.9
Q ss_pred CCEEEEEeeCCCCCCcceEEEEECCCC--eEEECCCCCCCCcceEEEEECCEEEEEecCCCCcccceEEEEeCCCC--eE
Q 007704 357 NGELYIFGGGDGNSWHNTVESYSPAND--EWTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIG--KW 432 (592)
Q Consensus 357 ~~~Iyv~GG~~~~~~~~~v~~yd~~t~--~W~~l~~lp~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~v~~yD~~t~--~W 432 (592)
+|+||+ |..++ .+++||..+. .|..-.... ++..-..+..++.+|+.- ....++.+|..++ .|
T Consensus 111 ~G~i~~-g~~~g-----~~y~ld~~~G~~~W~~~~~~~-~~~~~~~v~~~~~v~~~s------~~g~~~al~~~tG~~~W 177 (370)
T COG1520 111 DGKIYV-GSWDG-----KLYALDASTGTLVWSRNVGGS-PYYASPPVVGDGTVYVGT------DDGHLYALNADTGTLKW 177 (370)
T ss_pred CCeEEE-ecccc-----eEEEEECCCCcEEEEEecCCC-eEEecCcEEcCcEEEEec------CCCeEEEEEccCCcEEE
Confidence 677555 44443 7999999654 686543332 333334445566776653 2357788888755 57
Q ss_pred EEcccc-cCcccceEEEEECCEEEEEeccCCCCCCCeeEEEeCCCCe--EEEeccCCCCCcee--EEEEECCEEEEEecC
Q 007704 433 IRTRSM-LQKRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHY--WTKIANMNRRRGCH--SLAVLNGKLYALGGF 507 (592)
Q Consensus 433 ~~i~~~-p~~R~~~~a~~~~g~IYV~GG~~~~~~~~~v~~yD~~t~~--W~~i~~~p~~R~~~--s~v~~~~~Lyv~GG~ 507 (592)
+.-.+. ...+.....+..++.+|+-... +...++.+|+++++ |+.-...+..+..- .....++.||+-||.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~vy~~~~~----~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~ 253 (370)
T COG1520 178 TYETPAPLSLSIYGSPAIASGTVYVGSDG----YDGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGV 253 (370)
T ss_pred EEecCCccccccccCceeecceEEEecCC----CcceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEECCcE
Confidence 643222 2222222223567777775321 12258899997765 87532222221110 112223334433331
Q ss_pred CCCCCCCeEEEEeCCCC--eEEEcCCCCCC--Ccc-eEEEEECCEEEEEecccCCCccccEEEEEcC
Q 007704 508 DGSAMVPSIEVYDPRLG--SWMSGEPMKLS--RGY-LGAAVVKEAIYVIGGVKNGSEIVDTVERFKE 569 (592)
Q Consensus 508 ~~~~~~~~v~~yD~~t~--~W~~v~~lp~~--R~~-~s~~v~~~~Iyv~GG~~~~~~~~~~v~~Yd~ 569 (592)
-.......+.++|..+. .|+.-..+... +.. .....-++++|+........ ....+++++.
T Consensus 254 ~~~~~~g~~~~l~~~~G~~~W~~~~~~~~~~~~~~~~~~~~~dG~v~~~~~~~~~~-~~~~~~~~~~ 319 (370)
T COG1520 254 YAGSYGGKLLCLDADTGELIWSFPAGGSVQGSGLYTTPVAGADGKVYIGFTDNDGR-GSGSLYALAD 319 (370)
T ss_pred EEEecCCeEEEEEcCCCceEEEEecccEeccCCeeEEeecCCCccEEEEEeccccc-cccceEEEec
Confidence 00011223777776654 57764431111 111 11122356777754433211 2344555553
No 140
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=77.15 E-value=54 Score=33.72 Aligned_cols=116 Identities=16% Similarity=0.124 Sum_probs=66.3
Q ss_pred EEEEECCEEEEEecCCCCcccceEEEEeCCCCeEEEcccccCc-ccceEEEE--ECCEEEEEeccCCCCCCCeeEEEeCC
Q 007704 399 AGATIDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQK-RFALAAAE--LNGVLYATGGYDGNEYMNSAERFDPR 475 (592)
Q Consensus 399 ~~~~~~~~Iyv~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~-R~~~~a~~--~~g~IYV~GG~~~~~~~~~v~~yD~~ 475 (592)
.++.-+|.+|+.. ..-+-+-..|+.+..=+.++. |.+ ..+..-+. --+.+++. ......+++|||.
T Consensus 194 i~atpdGsvwyas-----lagnaiaridp~~~~aev~p~-P~~~~~gsRriwsdpig~~wit-----twg~g~l~rfdPs 262 (353)
T COG4257 194 ICATPDGSVWYAS-----LAGNAIARIDPFAGHAEVVPQ-PNALKAGSRRIWSDPIGRAWIT-----TWGTGSLHRFDPS 262 (353)
T ss_pred eEECCCCcEEEEe-----ccccceEEcccccCCcceecC-CCcccccccccccCccCcEEEe-----ccCCceeeEeCcc
Confidence 3444588888762 112456667777764444432 222 11111111 23556654 1223578999999
Q ss_pred CCeEEEec-cCCCCCceeEEEEECCEEEEEecCCCCCCCCeEEEEeCCCCeEEEcC
Q 007704 476 EHYWTKIA-NMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGE 530 (592)
Q Consensus 476 t~~W~~i~-~~p~~R~~~s~v~~~~~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~ 530 (592)
...|..-+ +-..+|....-|--.+++++.- -..+.+.+||+++.+.+.+.
T Consensus 263 ~~sW~eypLPgs~arpys~rVD~~grVW~se-----a~agai~rfdpeta~ftv~p 313 (353)
T COG4257 263 VTSWIEYPLPGSKARPYSMRVDRHGRVWLSE-----ADAGAIGRFDPETARFTVLP 313 (353)
T ss_pred cccceeeeCCCCCCCcceeeeccCCcEEeec-----cccCceeecCcccceEEEec
Confidence 99998875 2233443333333367777742 23467899999999988764
No 141
>PRK02268 hypothetical protein; Provisional
Probab=76.93 E-value=5.9 Score=36.44 Aligned_cols=100 Identities=12% Similarity=0.216 Sum_probs=56.8
Q ss_pred hccccCCccCccchhccCCCCeEEEEe----cCC----CeEeeEEEeccCCCccccCCCCCCCCCCCCCCceEEEEEeee
Q 007704 36 KQLFGLPAQHFLYVRKVDPGLPLFLFN----YTD----RKLHGIFEAASPGMMNINPYGWTDGSERTSYPAQVQIRVRMQ 107 (592)
Q Consensus 36 ~~~fgl~~~~~~~v~~i~~g~~lfl~~----~~~----~~l~g~~~a~s~g~~~~~~~a~~~~~~~~~~paqv~~~~~~~ 107 (592)
..+.|++.++...++++|||.-|.-|- +.. ...-||++.+++-... ..-+ ..-||.=+++ .
T Consensus 20 ~gf~qv~hgK~apl~RmkpGD~ivyYsp~~~~~~~~~~qaftAig~V~~~~~Yq-----~~m~--~~f~P~Rr~v----~ 88 (141)
T PRK02268 20 GGFMQVCHGKAAPLRRMKPGDWIIYYSPKTTFGGKDKLQAFTAIGKVKDDEPYQ-----VEMA--PGFIPWRRDV----D 88 (141)
T ss_pred CCEEEeCCCccchhhcCCCCCEEEEEeceEecCCCcccceEEEEEEEcCCceEe-----cccC--CCceeEEEEe----e
Confidence 456799999999999999999998875 333 3445566655542222 1101 1223433333 3
Q ss_pred ecCCCCCcchhHHHhcccC------CCCCC---CCCCHHHHHHHHHhh
Q 007704 108 CQPLNEEKFKPIIAANYYT------PHHFW---FELDHSQASKLIALL 146 (592)
Q Consensus 108 ~~pl~e~~~~~~i~~n~~~------~~~f~---~~l~~~q~~~l~~lf 146 (592)
..|..|-.|+++|-.=-+- ..+|+ ||++....+-+.+..
T Consensus 89 ~~~~~e~pi~pLi~~L~Fi~~k~~Wg~~fr~g~~eI~e~Df~~I~~am 136 (141)
T PRK02268 89 YYPCAETPIRPLLDHLDFTEDRKNWGYQFRFGHFEISKHDFETIASAM 136 (141)
T ss_pred EeecCccchHHhhcccceeeCcchhhHhhcCCcEecCHHHHHHHHHHh
Confidence 3356777888886532121 13444 566666655544433
No 142
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=75.79 E-value=39 Score=38.19 Aligned_cols=116 Identities=17% Similarity=0.277 Sum_probs=66.2
Q ss_pred EEEECCEEEEEeccCCCCCCCeeEEEeCCCCe--EEEeccCCCCC--------ceeEEEEECCEEEEEecCCCCCCCCeE
Q 007704 447 AAELNGVLYATGGYDGNEYMNSAERFDPREHY--WTKIANMNRRR--------GCHSLAVLNGKLYALGGFDGSAMVPSI 516 (592)
Q Consensus 447 a~~~~g~IYV~GG~~~~~~~~~v~~yD~~t~~--W~~i~~~p~~R--------~~~s~v~~~~~Lyv~GG~~~~~~~~~v 516 (592)
-++.++.||+.... ..++.+|..+++ |+.-...+... ...+.++.+++||+.. .+ ..+
T Consensus 65 Pvv~~g~vyv~s~~------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t-~d-----g~l 132 (527)
T TIGR03075 65 PLVVDGVMYVTTSY------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGT-LD-----ARL 132 (527)
T ss_pred CEEECCEEEEECCC------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEc-CC-----CEE
Confidence 45679999996542 358899988764 87653322111 1122455678888642 22 368
Q ss_pred EEEeCCCCe--EEEcC-CCCCC-CcceEEEEECCEEEEEecccCCCccccEEEEEcCC---CcEEE
Q 007704 517 EVYDPRLGS--WMSGE-PMKLS-RGYLGAAVVKEAIYVIGGVKNGSEIVDTVERFKEG---QGWEE 575 (592)
Q Consensus 517 ~~yD~~t~~--W~~v~-~lp~~-R~~~s~~v~~~~Iyv~GG~~~~~~~~~~v~~Yd~~---~~W~~ 575 (592)
+.+|..+.+ |+.-. .+... ....+-++.++.||+-.+. .+......|..||.+ ..|+.
T Consensus 133 ~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~-~~~~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 133 VALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISG-GEFGVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred EEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecc-cccCCCcEEEEEECCCCceeEec
Confidence 999998764 76532 22211 1223345668887764321 111234568999976 45764
No 143
>PTZ00420 coronin; Provisional
Probab=75.18 E-value=1.6e+02 Score=33.70 Aligned_cols=148 Identities=14% Similarity=0.121 Sum_probs=71.8
Q ss_pred EEEEEeeCCCCCCcceEEEEECCCCeE-EECCCCCCCCcceEEE-EECCEEEEEecCCCCcccceEEEEeCCCCeEEEcc
Q 007704 359 ELYIFGGGDGNSWHNTVESYSPANDEW-TSRPSLNGTKGSLAGA-TIDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTR 436 (592)
Q Consensus 359 ~Iyv~GG~~~~~~~~~v~~yd~~t~~W-~~l~~lp~~r~~~~~~-~~~~~Iyv~GG~~~~~~~~~v~~yD~~t~~W~~i~ 436 (592)
.+++.||.+ ..+..||+.+.+= ..+. . +..-.+++ ..+|.+++.|+.+ ..+.+||+.+++= +.
T Consensus 139 ~iLaSgS~D-----gtIrIWDl~tg~~~~~i~-~--~~~V~SlswspdG~lLat~s~D-----~~IrIwD~Rsg~~--i~ 203 (568)
T PTZ00420 139 YIMCSSGFD-----SFVNIWDIENEKRAFQIN-M--PKKLSSLKWNIKGNLLSGTCVG-----KHMHIIDPRKQEI--AS 203 (568)
T ss_pred eEEEEEeCC-----CeEEEEECCCCcEEEEEe-c--CCcEEEEEECCCCCEEEEEecC-----CEEEEEECCCCcE--EE
Confidence 455566655 3577888877642 1111 1 11111222 2367887777643 4688999987642 22
Q ss_pred cccC---cccceEEEE-----ECCEEEEEeccCCCCCCCeeEEEeCCC-CeEEEeccCCCCCceeEEEEE---CCEEEEE
Q 007704 437 SMLQ---KRFALAAAE-----LNGVLYATGGYDGNEYMNSAERFDPRE-HYWTKIANMNRRRGCHSLAVL---NGKLYAL 504 (592)
Q Consensus 437 ~~p~---~R~~~~a~~-----~~g~IYV~GG~~~~~~~~~v~~yD~~t-~~W~~i~~~p~~R~~~s~v~~---~~~Lyv~ 504 (592)
.+.. .+.. ..+. -++..++.+|.++. ....+.+||+++ ..-...-.+.. ..+.-+..+ .+.+|+.
T Consensus 204 tl~gH~g~~~s-~~v~~~~fs~d~~~IlTtG~d~~-~~R~VkLWDlr~~~~pl~~~~ld~-~~~~L~p~~D~~tg~l~ls 280 (568)
T PTZ00420 204 SFHIHDGGKNT-KNIWIDGLGGDDNYILSTGFSKN-NMREMKLWDLKNTTSALVTMSIDN-ASAPLIPHYDESTGLIYLI 280 (568)
T ss_pred EEecccCCcee-EEEEeeeEcCCCCEEEEEEcCCC-CccEEEEEECCCCCCceEEEEecC-CccceEEeeeCCCCCEEEE
Confidence 2211 1111 1111 24456666666542 234688899875 21111111111 001111122 4778888
Q ss_pred ecCCCCCCCCeEEEEeCCCCeEEEc
Q 007704 505 GGFDGSAMVPSIEVYDPRLGSWMSG 529 (592)
Q Consensus 505 GG~~~~~~~~~v~~yD~~t~~W~~v 529 (592)
|..+ ..+..|+...+.-..+
T Consensus 281 GkGD-----~tIr~~e~~~~~~~~l 300 (568)
T PTZ00420 281 GKGD-----GNCRYYQHSLGSIRKV 300 (568)
T ss_pred EECC-----CeEEEEEccCCcEEee
Confidence 7644 3577777766644444
No 144
>PF01878 EVE: EVE domain; InterPro: IPR002740 The EVE domain is part of the wider PUA domain superfamily. The function of this domain is not known but, given the structural similarities to PUA, is likely to involve RNA binding []. ; PDB: 2G2X_B 2AR1_A 3EOP_A 2EVE_A 2HD9_A 2ZBN_A 1WMM_A 2P5D_A 2GBS_A 1ZCE_A.
Probab=75.09 E-value=4.3 Score=37.23 Aligned_cols=96 Identities=13% Similarity=0.224 Sum_probs=53.0
Q ss_pred chhccCCCCeEEEEecC--CCeEeeEEEeccCCCccccCC----CCCCCCCCCCCCc--eEEEEEeeeecCCCCCcchhH
Q 007704 48 YVRKVDPGLPLFLFNYT--DRKLHGIFEAASPGMMNINPY----GWTDGSERTSYPA--QVQIRVRMQCQPLNEEKFKPI 119 (592)
Q Consensus 48 ~v~~i~~g~~lfl~~~~--~~~l~g~~~a~s~g~~~~~~~----a~~~~~~~~~~pa--qv~~~~~~~~~pl~e~~~~~~ 119 (592)
++++||||..+|+|--. .+.+.|+.|.+++.-.+-.+. .+.+... .++|. +|++...+.+ |++-.++|..
T Consensus 36 ~l~~mk~GD~vifY~s~~~~~~ivai~~V~~~~~~d~~~~~~~~~~~~~~~-~~~~~~v~v~~~~~~~~-pi~l~~Lk~~ 113 (143)
T PF01878_consen 36 NLKRMKPGDKVIFYHSGCKERGIVAIGEVVSEPYPDPTAFDPDSPYYDPKS-NPKPYRVDVEYVKIFEK-PIPLKELKAE 113 (143)
T ss_dssp HHHC--TT-EEEEEETSSSS-EEEEEEEEEEEEEE-GGGTSTTSTTBTTTS-CSSSEEEEEEEEEEEEE-EEEHHHHHC-
T ss_pred hhhcCCCCCEEEEEEcCCCCCEEEEEEEEeccccCCCccccccccCcCCcc-CCCeeEEEEEEEEecCC-CcCHHHHhcC
Confidence 67899999999999988 799999999998765544331 1112221 23455 4444444443 5543334321
Q ss_pred --HHhcc--cCCCCCCCCCCHHHHHHHHHh
Q 007704 120 --IAANY--YTPHHFWFELDHSQASKLIAL 145 (592)
Q Consensus 120 --i~~n~--~~~~~f~~~l~~~q~~~l~~l 145 (592)
+.+-. -+++--.+++|.+|...|++|
T Consensus 114 ~~l~~l~~i~~~r~s~~~it~~~~~~I~~~ 143 (143)
T PF01878_consen 114 PELENLSFIRNKRLSVFPITEEDFEAIMEM 143 (143)
T ss_dssp GGGTTSHHHHTTT-SEEEE-HHHHHHHHHH
T ss_pred CccccChhhhcCCcCeEEECHHHHHHHHhC
Confidence 22100 123455678899998888876
No 145
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=72.02 E-value=2.3e+02 Score=35.05 Aligned_cols=106 Identities=20% Similarity=0.305 Sum_probs=61.3
Q ss_pred CEEEEEecCCCCcccceEEEEeCCCCeEEEcc--c--ccC--------------ccc-c-eEEEE-ECCEEEEEeccCCC
Q 007704 405 NKIFAIGGGNGLECFSDVEMLDLDIGKWIRTR--S--MLQ--------------KRF-A-LAAAE-LNGVLYATGGYDGN 463 (592)
Q Consensus 405 ~~Iyv~GG~~~~~~~~~v~~yD~~t~~W~~i~--~--~p~--------------~R~-~-~~a~~-~~g~IYV~GG~~~~ 463 (592)
+.|||.... .+.+.+||+.++....+. . .+. ... . .++++ -+|.+||....+
T Consensus 752 ~~LYVADs~-----n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N-- 824 (1057)
T PLN02919 752 KELYIADSE-----SSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYN-- 824 (1057)
T ss_pred CEEEEEECC-----CCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCC--
Confidence 459988653 368899999876533211 0 000 000 1 12222 357899986543
Q ss_pred CCCCeeEEEeCCCCeEEEeccCCC----------C--CceeEEEEE-CCEEEEEecCCCCCCCCeEEEEeCCCCe
Q 007704 464 EYMNSAERFDPREHYWTKIANMNR----------R--RGCHSLAVL-NGKLYALGGFDGSAMVPSIEVYDPRLGS 525 (592)
Q Consensus 464 ~~~~~v~~yD~~t~~W~~i~~~p~----------~--R~~~s~v~~-~~~Lyv~GG~~~~~~~~~v~~yD~~t~~ 525 (592)
+.+.+||+.++....+..... . ..-+.+++- +++|||....+ +.|.++|..+..
T Consensus 825 ---~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~N-----n~Irvid~~~~~ 891 (1057)
T PLN02919 825 ---HKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNN-----SLIRYLDLNKGE 891 (1057)
T ss_pred ---CEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCC-----CEEEEEECCCCc
Confidence 679999999988876643211 0 011223333 78899986543 468889988765
No 146
>PRK01742 tolB translocation protein TolB; Provisional
Probab=71.71 E-value=1.6e+02 Score=32.12 Aligned_cols=143 Identities=13% Similarity=-0.039 Sum_probs=68.3
Q ss_pred ceEEEEECCCCeEEECCCCCCCCcceEEEEECCEEEEEecCCCCcccceEEEEeCCCCeEEEcccccCcccceEEEE-EC
Q 007704 373 NTVESYSPANDEWTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAE-LN 451 (592)
Q Consensus 373 ~~v~~yd~~t~~W~~l~~lp~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~~~a~~-~~ 451 (592)
..++..|.....=..+..... .......+-+++.+++...... ...++++|..+++-+.+...+.... ..+. -+
T Consensus 184 ~~i~i~d~dg~~~~~lt~~~~-~v~~p~wSPDG~~la~~s~~~~--~~~i~i~dl~tg~~~~l~~~~g~~~--~~~wSPD 258 (429)
T PRK01742 184 YEVRVADYDGFNQFIVNRSSQ-PLMSPAWSPDGSKLAYVSFENK--KSQLVVHDLRSGARKVVASFRGHNG--APAFSPD 258 (429)
T ss_pred EEEEEECCCCCCceEeccCCC-ccccceEcCCCCEEEEEEecCC--CcEEEEEeCCCCceEEEecCCCccC--ceeECCC
Confidence 567777765443222211111 1111222335554455443221 3578999998887666654432111 1222 24
Q ss_pred CE-EEEEeccCCCCCCCeeEEEeCCCCeEEEeccCCCCCceeEEEEE--CCE-EEEEecCCCCCCCCeEEEEeCCCCeEE
Q 007704 452 GV-LYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL--NGK-LYALGGFDGSAMVPSIEVYDPRLGSWM 527 (592)
Q Consensus 452 g~-IYV~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~~s~v~~--~~~-Lyv~GG~~~~~~~~~v~~yD~~t~~W~ 527 (592)
++ |++....++. .++|.+|+.++....+..-... .....+ +++ |+.....++ ...+|.++.....-+
T Consensus 259 G~~La~~~~~~g~---~~Iy~~d~~~~~~~~lt~~~~~---~~~~~wSpDG~~i~f~s~~~g---~~~I~~~~~~~~~~~ 329 (429)
T PRK01742 259 GSRLAFASSKDGV---LNIYVMGANGGTPSQLTSGAGN---NTEPSWSPDGQSILFTSDRSG---SPQVYRMSASGGGAS 329 (429)
T ss_pred CCEEEEEEecCCc---EEEEEEECCCCCeEeeccCCCC---cCCEEECCCCCEEEEEECCCC---CceEEEEECCCCCeE
Confidence 54 4443322222 4688999988877766432211 112222 554 444433222 246777877655433
Q ss_pred Ec
Q 007704 528 SG 529 (592)
Q Consensus 528 ~v 529 (592)
.+
T Consensus 330 ~l 331 (429)
T PRK01742 330 LV 331 (429)
T ss_pred Ee
Confidence 33
No 147
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=70.90 E-value=1.6e+02 Score=31.91 Aligned_cols=110 Identities=24% Similarity=0.258 Sum_probs=56.0
Q ss_pred ECCEEEEEeccCCCCCCCeeEEEeCCCCeEEEeccCCCCCceeEEEEE-CCEEEEEecCCCCCCCCeEEEEeCCCCeEEE
Q 007704 450 LNGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL-NGKLYALGGFDGSAMVPSIEVYDPRLGSWMS 528 (592)
Q Consensus 450 ~~g~IYV~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~~s~v~~-~~~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~ 528 (592)
.+|.+...||.+.-. -++|++++.-..+-.- ..+--+++..- ||..+..||.+. .+-++|++...=
T Consensus 313 ~DGSL~~tGGlD~~~-----RvWDlRtgr~im~L~g-H~k~I~~V~fsPNGy~lATgs~Dn-----t~kVWDLR~r~~-- 379 (459)
T KOG0272|consen 313 PDGSLAATGGLDSLG-----RVWDLRTGRCIMFLAG-HIKEILSVAFSPNGYHLATGSSDN-----TCKVWDLRMRSE-- 379 (459)
T ss_pred CCCceeeccCccchh-----heeecccCcEEEEecc-cccceeeEeECCCceEEeecCCCC-----cEEEeeeccccc--
Confidence 388999999976432 3567776654333111 22222233322 788888888653 455566544322
Q ss_pred cCCCCCCCcceEEEE---ECCEEEEEecccCCCccccEEEEEcCCCcEEEcccc
Q 007704 529 GEPMKLSRGYLGAAV---VKEAIYVIGGVKNGSEIVDTVERFKEGQGWEEINSR 579 (592)
Q Consensus 529 v~~lp~~R~~~s~~v---~~~~Iyv~GG~~~~~~~~~~v~~Yd~~~~W~~v~~~ 579 (592)
+-.+|.-+.-.+-+- ..+..++.+|++. ++-+|.. ..|+.+..+
T Consensus 380 ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~------t~kiWs~-~~~~~~ksL 426 (459)
T KOG0272|consen 380 LYTIPAHSNLVSQVKYSPQEGYFLVTASYDN------TVKIWST-RTWSPLKSL 426 (459)
T ss_pred ceecccccchhhheEecccCCeEEEEcccCc------ceeeecC-CCcccchhh
Confidence 223332222222121 1466677777653 3555554 556555443
No 148
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=69.71 E-value=1.4e+02 Score=32.54 Aligned_cols=123 Identities=15% Similarity=0.275 Sum_probs=65.2
Q ss_pred CCEEEEEeeCCCCCCcceEEEEECCCCeEEECCCCCCCCcceEEEEE-CCEEEEEecCCCCcccceEEEEeCCCCeEEEc
Q 007704 357 NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATI-DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRT 435 (592)
Q Consensus 357 ~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~lp~~r~~~~~~~~-~~~Iyv~GG~~~~~~~~~v~~yD~~t~~W~~i 435 (592)
+|-||..|-.+ ..+-+||..+.. .++.+|..-.--....+ +|-.|++-+.+. ..|.++|+...+ ..
T Consensus 358 DgLifgtgt~d-----~~vkiwdlks~~--~~a~Fpght~~vk~i~FsENGY~Lat~add----~~V~lwDLRKl~--n~ 424 (506)
T KOG0289|consen 358 DGLIFGTGTPD-----GVVKIWDLKSQT--NVAKFPGHTGPVKAISFSENGYWLATAADD----GSVKLWDLRKLK--NF 424 (506)
T ss_pred CceEEeccCCC-----ceEEEEEcCCcc--ccccCCCCCCceeEEEeccCceEEEEEecC----CeEEEEEehhhc--cc
Confidence 44455544433 457788888766 55556653333333433 333444433321 237888886543 22
Q ss_pred ccccCcc-cceEEEEE--CCEEEEEeccCCCCCCCeeEEEeCCCCeEEEeccCCCCCceeEEEEE
Q 007704 436 RSMLQKR-FALAAAEL--NGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL 497 (592)
Q Consensus 436 ~~~p~~R-~~~~a~~~--~g~IYV~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~~s~v~~ 497 (592)
...+.+- ..-....+ .|+..+++|.+ -.++.|+-.+..|+.+...+..-.-...|.+
T Consensus 425 kt~~l~~~~~v~s~~fD~SGt~L~~~g~~-----l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~F 484 (506)
T KOG0289|consen 425 KTIQLDEKKEVNSLSFDQSGTYLGIAGSD-----LQVYICKKKTKSWTEIKELADHSGLSTGVRF 484 (506)
T ss_pred ceeeccccccceeEEEcCCCCeEEeecce-----eEEEEEecccccceeeehhhhcccccceeee
Confidence 2222221 12222233 45666666632 3467778889999999776654444455555
No 149
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=69.64 E-value=1.7e+02 Score=31.59 Aligned_cols=96 Identities=11% Similarity=0.090 Sum_probs=55.6
Q ss_pred CCeEEECCCCCCCCcceEEEEECCEEEEEecCCCCcccceEEEEeCCCCeEEEccc-----ccCc--ccceEEEEECCEE
Q 007704 382 NDEWTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRS-----MLQK--RFALAAAELNGVL 454 (592)
Q Consensus 382 t~~W~~l~~lp~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~v~~yD~~t~~W~~i~~-----~p~~--R~~~~a~~~~g~I 454 (592)
.+.|+.+.. .....-.++.++|++|++.- .-.++.++..-. -.++.+ +... +.....+...|.+
T Consensus 189 ~~~Wt~l~~--~~~~~~DIi~~kGkfYAvD~------~G~l~~i~~~l~-i~~v~~~i~~~~~~g~~~~~~yLVEs~GdL 259 (373)
T PLN03215 189 GNVLKALKQ--MGYHFSDIIVHKGQTYALDS------IGIVYWINSDLE-FSRFGTSLDENITDGCWTGDRRFVECCGEL 259 (373)
T ss_pred CCeeeEccC--CCceeeEEEEECCEEEEEcC------CCeEEEEecCCc-eeeecceecccccCCcccCceeEEEECCEE
Confidence 489999964 22234467888999999932 235566653211 112221 1111 1223456678889
Q ss_pred EEEeccCCCC--------------CCCeeEEEeCCCCeEEEeccCC
Q 007704 455 YATGGYDGNE--------------YMNSAERFDPREHYWTKIANMN 486 (592)
Q Consensus 455 YV~GG~~~~~--------------~~~~v~~yD~~t~~W~~i~~~p 486 (592)
+++..+.... ..-.++..|.+...|.++..+.
T Consensus 260 LmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLg 305 (373)
T PLN03215 260 YIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLG 305 (373)
T ss_pred EEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecccC
Confidence 9998753211 1123455688889999988764
No 150
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=69.34 E-value=94 Score=32.27 Aligned_cols=128 Identities=16% Similarity=0.207 Sum_probs=69.7
Q ss_pred ceEEEEeCCCCeEEEcccccCcccceEEEEECCEEEEEeccCCCCCCCeeEEEeCCCCeEEEeccCCCCCceeEEEEE-C
Q 007704 420 SDVEMLDLDIGKWIRTRSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL-N 498 (592)
Q Consensus 420 ~~v~~yD~~t~~W~~i~~~p~~R~~~~a~~~~g~IYV~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~~s~v~~-~ 498 (592)
..+-.||..++.-. ..+.....-..++..+..=.++||.+ ..+-+||+.++.=..++.-..+..+ +... .
T Consensus 35 gslrlYdv~~~~l~--~~~~~~~plL~c~F~d~~~~~~G~~d-----g~vr~~Dln~~~~~~igth~~~i~c--i~~~~~ 105 (323)
T KOG1036|consen 35 GSLRLYDVPANSLK--LKFKHGAPLLDCAFADESTIVTGGLD-----GQVRRYDLNTGNEDQIGTHDEGIRC--IEYSYE 105 (323)
T ss_pred CcEEEEeccchhhh--hheecCCceeeeeccCCceEEEeccC-----ceEEEEEecCCcceeeccCCCceEE--EEeecc
Confidence 35567777665211 11111112223344455555667766 3578899998877777654433322 2222 3
Q ss_pred CEEEEEecCCCCCCCCeEEEEeCCCCeEEEcCCCCCCCcceEEEEECCEEEEEecccCCCccccEEEEEcCC
Q 007704 499 GKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVVKEAIYVIGGVKNGSEIVDTVERFKEG 570 (592)
Q Consensus 499 ~~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~lp~~R~~~s~~v~~~~Iyv~GG~~~~~~~~~~v~~Yd~~ 570 (592)
...+|.||+++ .|..+|++.. ..+.....+-.-+++.+.++. +|+|+.+ ..|.+||+-
T Consensus 106 ~~~vIsgsWD~-----~ik~wD~R~~--~~~~~~d~~kkVy~~~v~g~~-LvVg~~~------r~v~iyDLR 163 (323)
T KOG1036|consen 106 VGCVISGSWDK-----TIKFWDPRNK--VVVGTFDQGKKVYCMDVSGNR-LVVGTSD------RKVLIYDLR 163 (323)
T ss_pred CCeEEEcccCc-----cEEEEecccc--ccccccccCceEEEEeccCCE-EEEeecC------ceEEEEEcc
Confidence 34577888874 5778888761 112233334444555555554 4556654 458889863
No 151
>PRK10115 protease 2; Provisional
Probab=67.73 E-value=2.5e+02 Score=32.88 Aligned_cols=207 Identities=9% Similarity=-0.024 Sum_probs=107.7
Q ss_pred CCEEEEEeeCCCCCCcceEEEEECCCCeEEECCC-CCCCCcceEEEEE-CCEEEEEecCCC-CcccceEEEEeCCCCeE-
Q 007704 357 NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPS-LNGTKGSLAGATI-DNKIFAIGGGNG-LECFSDVEMLDLDIGKW- 432 (592)
Q Consensus 357 ~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~-lp~~r~~~~~~~~-~~~Iyv~GG~~~-~~~~~~v~~yD~~t~~W- 432 (592)
+++.++++-..++....++++.|+.++.. ++. ++..+ ...+.. +++-+++...+. .....++|.+++.|..-
T Consensus 137 dg~~la~~~d~~G~E~~~l~v~d~~tg~~--l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~ 212 (686)
T PRK10115 137 DNTIMALAEDFLSRRQYGIRFRNLETGNW--YPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQ 212 (686)
T ss_pred CCCEEEEEecCCCcEEEEEEEEECCCCCC--CCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhH
Confidence 77888888766666677899999988742 111 12222 233333 554444433322 12447899999998832
Q ss_pred -EEcccccCcccceEEEEE-CCEEEEEeccCCCCCCCeeEEEeC--CCCeEEEeccCCCCCceeEEEEECCEEEEEecCC
Q 007704 433 -IRTRSMLQKRFALAAAEL-NGVLYATGGYDGNEYMNSAERFDP--REHYWTKIANMNRRRGCHSLAVLNGKLYALGGFD 508 (592)
Q Consensus 433 -~~i~~~p~~R~~~~a~~~-~g~IYV~GG~~~~~~~~~v~~yD~--~t~~W~~i~~~p~~R~~~s~v~~~~~Lyv~GG~~ 508 (592)
..+-.-+........... +++..++...+.. .+.++.|+. .+..|..+.+.+... .......++.+|+.--.+
T Consensus 213 d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ly~~tn~~ 289 (686)
T PRK10115 213 DELVYEEKDDTFYVSLHKTTSKHYVVIHLASAT--TSEVLLLDAELADAEPFVFLPRRKDH-EYSLDHYQHRFYLRSNRH 289 (686)
T ss_pred CeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCc--cccEEEEECcCCCCCceEEEECCCCC-EEEEEeCCCEEEEEEcCC
Confidence 222111112222222223 4444344443332 356777773 344444333222221 123334478888875432
Q ss_pred CCCCCCeEEEEeCC-CCeEEEcCCCCCCCcceEEEEECCEEEEEecccCCCccccEEEEEcCC-CcEEEc
Q 007704 509 GSAMVPSIEVYDPR-LGSWMSGEPMKLSRGYLGAAVVKEAIYVIGGVKNGSEIVDTVERFKEG-QGWEEI 576 (592)
Q Consensus 509 ~~~~~~~v~~yD~~-t~~W~~v~~lp~~R~~~s~~v~~~~Iyv~GG~~~~~~~~~~v~~Yd~~-~~W~~v 576 (592)
. ....+...+.. ...|+.+-+....+.--.+...++.+++..-..+. ..++++|.. .....+
T Consensus 290 ~--~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~l~~~~~~~g~----~~l~~~~~~~~~~~~l 353 (686)
T PRK10115 290 G--KNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTDWLVVEERQRGL----TSLRQINRKTREVIGI 353 (686)
T ss_pred C--CCceEEEecCCCcccCeEEECCCCCCEEEEEEEECCEEEEEEEeCCE----EEEEEEcCCCCceEEe
Confidence 2 23346777776 57898876543233333455557777776544332 557777765 444444
No 152
>PRK13684 Ycf48-like protein; Provisional
Probab=66.14 E-value=1.8e+02 Score=30.65 Aligned_cols=189 Identities=19% Similarity=0.218 Sum_probs=92.8
Q ss_pred CCEEEEEeeCCCCCCcceEEEEECCCCeEEECCCC-CCCCcceEEEEE-CCEEEEEecCCCCcccceEEEEeCCCCeEEE
Q 007704 357 NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSL-NGTKGSLAGATI-DNKIFAIGGGNGLECFSDVEMLDLDIGKWIR 434 (592)
Q Consensus 357 ~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~l-p~~r~~~~~~~~-~~~Iyv~GG~~~~~~~~~v~~yD~~t~~W~~ 434 (592)
++..|+.|.. ..++.=+-.-.+|+.+... ..+...+....+ ++.+|+.|.. ..+++=+-.-.+|+.
T Consensus 99 ~~~~~~~G~~------g~i~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~g~~------G~i~~S~DgG~tW~~ 166 (334)
T PRK13684 99 GDEGWIVGQP------SLLLHTTDGGKNWTRIPLSEKLPGSPYLITALGPGTAEMATNV------GAIYRTTDGGKNWEA 166 (334)
T ss_pred CCcEEEeCCC------ceEEEECCCCCCCeEccCCcCCCCCceEEEEECCCcceeeecc------ceEEEECCCCCCcee
Confidence 5556665431 2233333344689887532 122222333334 3456666542 234444445678998
Q ss_pred cccccCcccceEEEEECCEEEEEeccCCCCCCCeeEE-EeCCCCeEEEeccCCCCCceeEEEEE-CCEEEEEecCCCCCC
Q 007704 435 TRSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAER-FDPREHYWTKIANMNRRRGCHSLAVL-NGKLYALGGFDGSAM 512 (592)
Q Consensus 435 i~~~p~~R~~~~a~~~~g~IYV~GG~~~~~~~~~v~~-yD~~t~~W~~i~~~p~~R~~~s~v~~-~~~Lyv~GG~~~~~~ 512 (592)
+...... .-+.+....+..|+..|..+ .++. .|....+|+.+.. +..+...+++.. ++.++++|.. +
T Consensus 167 ~~~~~~g-~~~~i~~~~~g~~v~~g~~G-----~i~~s~~~gg~tW~~~~~-~~~~~l~~i~~~~~g~~~~vg~~-G--- 235 (334)
T PRK13684 167 LVEDAAG-VVRNLRRSPDGKYVAVSSRG-----NFYSTWEPGQTAWTPHQR-NSSRRLQSMGFQPDGNLWMLARG-G--- 235 (334)
T ss_pred CcCCCcc-eEEEEEECCCCeEEEEeCCc-----eEEEEcCCCCCeEEEeeC-CCcccceeeeEcCCCCEEEEecC-C---
Confidence 7643322 33344444444445444332 2222 2444567998854 444444555544 7788888653 1
Q ss_pred CCeEEEEe-C-CCCeEEEcCCC-CCC-CcceEEEEE-CCEEEEEecccCCCccccEEEEEcCC-CcEEEccc
Q 007704 513 VPSIEVYD-P-RLGSWMSGEPM-KLS-RGYLGAAVV-KEAIYVIGGVKNGSEIVDTVERFKEG-QGWEEINS 578 (592)
Q Consensus 513 ~~~v~~yD-~-~t~~W~~v~~l-p~~-R~~~s~~v~-~~~Iyv~GG~~~~~~~~~~v~~Yd~~-~~W~~v~~ 578 (592)
...+. . .-.+|+.+... ... ...++++.. ++.+|++|.. + .++.-... .+|+.+..
T Consensus 236 ---~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~-G------~v~~S~d~G~tW~~~~~ 297 (334)
T PRK13684 236 ---QIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGN-G------TLLVSKDGGKTWEKDPV 297 (334)
T ss_pred ---EEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEcCC-C------eEEEeCCCCCCCeECCc
Confidence 22342 2 23489976421 111 122334443 5678887653 2 13333333 88998753
No 153
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=65.87 E-value=1.4e+02 Score=32.49 Aligned_cols=198 Identities=16% Similarity=0.190 Sum_probs=98.3
Q ss_pred ceEEEEECCEEEEEee---CC-CCCCcceEEEEECCCCeEEECCCCCCCCcceEEEEECCEEEEEecCCCCcccceEEEE
Q 007704 350 YASAAMLNGELYIFGG---GD-GNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEML 425 (592)
Q Consensus 350 ~~s~v~~~~~Iyv~GG---~~-~~~~~~~v~~yd~~t~~W~~l~~lp~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~v~~y 425 (592)
.+++..+++.+=+.-- |. .+...|+++++|..-+.--.+.-+...-.-+++-..++..|++-= ....-+++.
T Consensus 379 ~f~~deyngylRvaTt~~dW~~~de~~N~vYilDe~lnvvGkltGl~~gERIYAvRf~gdv~yiVTf----rqtDPlfvi 454 (603)
T COG4880 379 SFDGDEYNGYLRVATTLSDWTSEDEPVNAVYILDENLNVVGKLTGLAPGERIYAVRFVGDVLYIVTF----RQTDPLFVI 454 (603)
T ss_pred cccCcccceEEEEEeeecccccCCCccceeEEEcCCCcEEEEEeccCCCceEEEEEEeCceEEEEEE----eccCceEEE
Confidence 3445555665555443 32 356779999999888777666554433333455556778888732 223456666
Q ss_pred eCCCCeE-EEcccccCcccceEEEEE-CCEEEEEeccCCCCCCCeeEEEeCCCC-------------eEEEeccCCCCCc
Q 007704 426 DLDIGKW-IRTRSMLQKRFALAAAEL-NGVLYATGGYDGNEYMNSAERFDPREH-------------YWTKIANMNRRRG 490 (592)
Q Consensus 426 D~~t~~W-~~i~~~p~~R~~~~a~~~-~g~IYV~GG~~~~~~~~~v~~yD~~t~-------------~W~~i~~~p~~R~ 490 (592)
|+..-+= +.+..+..|-++.-.-.+ ++.+.=+|-+.+. -.+-.||...- .|+ |.-+-
T Consensus 455 DlsNPenPkvlGeLKIPGfS~YLHpigen~~lGvG~~~g~---vKiSLFdiSdl~~PkEv~~y~l~~~ws-----pvf~d 526 (603)
T COG4880 455 DLSNPENPKVLGELKIPGFSEYLHPIGENRLLGVGAYQGG---VKISLFDISDLAAPKEVSNYTLSNAWS-----PVFYD 526 (603)
T ss_pred EcCCCCCCceeEEEecCCchhhccccCCCcEEEeecccCC---ceEEEEeccCCCCchhhhheehhhhcc-----hhhhc
Confidence 6654321 112223333332222223 3445555544432 23455654322 233 22233
Q ss_pred eeEEEEE-CCEEEEEecCCCCCCCCeEEEEeCCCC-eEEEc--CCCCCCCcceEEEEECCEEEEEecccCCCccccEEEE
Q 007704 491 CHSLAVL-NGKLYALGGFDGSAMVPSIEVYDPRLG-SWMSG--EPMKLSRGYLGAAVVKEAIYVIGGVKNGSEIVDTVER 566 (592)
Q Consensus 491 ~~s~v~~-~~~Lyv~GG~~~~~~~~~v~~yD~~t~-~W~~v--~~lp~~R~~~s~~v~~~~Iyv~GG~~~~~~~~~~v~~ 566 (592)
.|+...- .-.|+.+--+.+ -++|-.+.+ .-+.- ...+.-| +..+++.+|++|| +.||.
T Consensus 527 hHAFl~d~~~~ifFlPay~~------gyif~iedg~kl~k~~e~k~na~R----A~fi~dylY~vg~--------~ev~~ 588 (603)
T COG4880 527 HHAFLYDPEAEIFFLPAYLG------GYIFFIEDGSKLRKRAERKLNADR----AFFIKDYLYLVGG--------NEVWK 588 (603)
T ss_pred cceeecCCcccEEEecccCc------cEEEEEecCceeeehhhhccccee----eEEecceEEEecc--------ceeEE
Confidence 3333222 233444432211 112222222 11110 1122222 4567899999999 56999
Q ss_pred EcCCCcEEEccc
Q 007704 567 FKEGQGWEEINS 578 (592)
Q Consensus 567 Yd~~~~W~~v~~ 578 (592)
||. +.|..++.
T Consensus 589 lde-nswe~Vge 599 (603)
T COG4880 589 LDE-NSWEVVGE 599 (603)
T ss_pred ecc-chHhhhhh
Confidence 998 88988764
No 154
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=64.86 E-value=44 Score=37.45 Aligned_cols=75 Identities=20% Similarity=0.225 Sum_probs=47.0
Q ss_pred ccCcccceEEEEE--CCEEEEEeccCCCCCCCeeEEEeCCCCeEEEeccCCCCCceeEEEEE--CCEEEEEecCCCCCCC
Q 007704 438 MLQKRFALAAAEL--NGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL--NGKLYALGGFDGSAMV 513 (592)
Q Consensus 438 ~p~~R~~~~a~~~--~g~IYV~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~~s~v~~--~~~Lyv~GG~~~~~~~ 513 (592)
+..|+++..++.. .--||+.|- -+++|+++++.+.|-..=....+ .--+|.+ -+.|+++||.++
T Consensus 130 ~RIP~~GRDm~y~~~scDly~~gs------g~evYRlNLEqGrfL~P~~~~~~--~lN~v~in~~hgLla~Gt~~g---- 197 (703)
T KOG2321|consen 130 TRIPKFGRDMKYHKPSCDLYLVGS------GSEVYRLNLEQGRFLNPFETDSG--ELNVVSINEEHGLLACGTEDG---- 197 (703)
T ss_pred eecCcCCccccccCCCccEEEeec------CcceEEEEccccccccccccccc--cceeeeecCccceEEecccCc----
Confidence 3456777667665 345777663 26899999999999643222211 1122333 345888888653
Q ss_pred CeEEEEeCCCCe
Q 007704 514 PSIEVYDPRLGS 525 (592)
Q Consensus 514 ~~v~~yD~~t~~ 525 (592)
.|+.+|+.+..
T Consensus 198 -~VEfwDpR~ks 208 (703)
T KOG2321|consen 198 -VVEFWDPRDKS 208 (703)
T ss_pred -eEEEecchhhh
Confidence 58899998764
No 155
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=64.51 E-value=71 Score=33.71 Aligned_cols=169 Identities=18% Similarity=0.237 Sum_probs=83.1
Q ss_pred EECCEEEEEeeCCCCCCcceEEEEECCCCeEEECCCCCCCCcceEEEEECCEEEEEecCCCCcccceEEEEeCCCCeEEE
Q 007704 355 MLNGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIGKWIR 434 (592)
Q Consensus 355 ~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~lp~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~v~~yD~~t~~W~~ 434 (592)
.+++.++|-|-.+ +++-++|..+-.... .+...-.+--+.-++++++|-|..+ +++-++|..|++-
T Consensus 204 QYDD~kiVSGlrD-----nTikiWD~n~~~c~~--~L~GHtGSVLCLqyd~rviisGSSD-----sTvrvWDv~tge~-- 269 (499)
T KOG0281|consen 204 QYDDEKIVSGLRD-----NTIKIWDKNSLECLK--ILTGHTGSVLCLQYDERVIVSGSSD-----STVRVWDVNTGEP-- 269 (499)
T ss_pred Eecchhhhccccc-----CceEEeccccHHHHH--hhhcCCCcEEeeeccceEEEecCCC-----ceEEEEeccCCch--
Confidence 3455555555443 456666655432211 1111112222334588887777543 5788899887641
Q ss_pred cccccCcccceEEEEE----CCEEEEEeccCCCCCCCeeEEEeCCCCeEEEecc---CCCCCceeEEEEECCEEEEEecC
Q 007704 435 TRSMLQKRFALAAAEL----NGVLYATGGYDGNEYMNSAERFDPREHYWTKIAN---MNRRRGCHSLAVLNGKLYALGGF 507 (592)
Q Consensus 435 i~~~p~~R~~~~a~~~----~g~IYV~GG~~~~~~~~~v~~yD~~t~~W~~i~~---~p~~R~~~s~v~~~~~Lyv~GG~ 507 (592)
...-.+|+-+++ ++.+.|....+ .++.++|...-+ .+.- +-.-|..--+|-++++..|....
T Consensus 270 ----l~tlihHceaVLhlrf~ng~mvtcSkD-----rsiaVWdm~sps--~it~rrVLvGHrAaVNvVdfd~kyIVsASg 338 (499)
T KOG0281|consen 270 ----LNTLIHHCEAVLHLRFSNGYMVTCSKD-----RSIAVWDMASPT--DITLRRVLVGHRAAVNVVDFDDKYIVSASG 338 (499)
T ss_pred ----hhHHhhhcceeEEEEEeCCEEEEecCC-----ceeEEEeccCch--HHHHHHHHhhhhhheeeeccccceEEEecC
Confidence 122234443332 33333333222 345555554432 1111 11223333344457774443221
Q ss_pred CCCCCCCeEEEEeCCCCeEEEcCCCCCCCcceEEEEECCEEEEEeccc
Q 007704 508 DGSAMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVVKEAIYVIGGVK 555 (592)
Q Consensus 508 ~~~~~~~~v~~yD~~t~~W~~v~~lp~~R~~~s~~v~~~~Iyv~GG~~ 555 (592)
+ .++-++++.+....+ .+..-+.+.++..++++++|-|..+
T Consensus 339 D-----RTikvW~~st~efvR--tl~gHkRGIAClQYr~rlvVSGSSD 379 (499)
T KOG0281|consen 339 D-----RTIKVWSTSTCEFVR--TLNGHKRGIACLQYRDRLVVSGSSD 379 (499)
T ss_pred C-----ceEEEEeccceeeeh--hhhcccccceehhccCeEEEecCCC
Confidence 1 356677777665543 2333455667788889988877654
No 156
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=62.76 E-value=2.5e+02 Score=34.17 Aligned_cols=159 Identities=13% Similarity=0.159 Sum_probs=78.9
Q ss_pred ccceEEEEeCCCCeEEEcccccCc--ccceEEEEE---CC-EEEEEeccCCCC------CCCeeEEEeCCC--CeEEEec
Q 007704 418 CFSDVEMLDLDIGKWIRTRSMLQK--RFALAAAEL---NG-VLYATGGYDGNE------YMNSAERFDPRE--HYWTKIA 483 (592)
Q Consensus 418 ~~~~v~~yD~~t~~W~~i~~~p~~--R~~~~a~~~---~g-~IYV~GG~~~~~------~~~~v~~yD~~t--~~W~~i~ 483 (592)
+.+.+..+|+.+++-...-.++.. .++.+++.+ +. .+..+|+..... ....++.|+.-. +.-+.+-
T Consensus 851 w~s~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh 930 (1205)
T KOG1898|consen 851 WVSSIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLH 930 (1205)
T ss_pred ccceEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeee
Confidence 334566677766655444333332 223333332 22 356666643332 123466676432 2233333
Q ss_pred cCCCCCceeEEEEECCEEEEEecCCCCCCCCeEEEEeCCCCeEEEcCCCCCCCcceEEEEE-CCEEEEEecccCCCcccc
Q 007704 484 NMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVV-KEAIYVIGGVKNGSEIVD 562 (592)
Q Consensus 484 ~~p~~R~~~s~v~~~~~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~lp~~R~~~s~~v~-~~~Iyv~GG~~~~~~~~~ 562 (592)
...-+..-++++.+.+++++--| +.+.+||.-..+--+......-+..-+.... ..+|+| |-...+ -
T Consensus 931 ~T~~~~~v~Ai~~f~~~~LagvG-------~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~~RI~V-gD~qeS----V 998 (1205)
T KOG1898|consen 931 KTEIPGPVGAICPFQGRVLAGVG-------RFLRLYDLGKKKLLRKCELKFIPNRISSIQTYGARIVV-GDIQES----V 998 (1205)
T ss_pred ccCCCccceEEeccCCEEEEecc-------cEEEEeeCChHHHHhhhhhccCceEEEEEeecceEEEE-eeccce----E
Confidence 33333444677777886665434 4578888876654444333332222333333 344444 554332 4
Q ss_pred EEEEEcCC-CcEEEccccCCCCccceEE
Q 007704 563 TVERFKEG-QGWEEINSRAIGKRCFMSV 589 (592)
Q Consensus 563 ~v~~Yd~~-~~W~~v~~~p~~~r~~~sa 589 (592)
...+|+++ ++-..+.+-|++ |...++
T Consensus 999 ~~~~y~~~~n~l~~fadD~~p-R~Vt~~ 1025 (1205)
T KOG1898|consen 999 HFVRYRREDNQLIVFADDPVP-RHVTAL 1025 (1205)
T ss_pred EEEEEecCCCeEEEEeCCCcc-ceeeEE
Confidence 45667777 666666666666 444433
No 157
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=61.57 E-value=2.5e+02 Score=30.70 Aligned_cols=137 Identities=19% Similarity=0.217 Sum_probs=74.5
Q ss_pred ceEEEEE-CCEEEEEecCCCCcccceEEEEeCCCCeEEEcccccCcccce-EEEE--ECCEEEEEeccCCCCCCCeeEEE
Q 007704 397 SLAGATI-DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFAL-AAAE--LNGVLYATGGYDGNEYMNSAERF 472 (592)
Q Consensus 397 ~~~~~~~-~~~Iyv~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~~-~a~~--~~g~IYV~GG~~~~~~~~~v~~y 472 (592)
.++++.+ +|.||..|-.+ ..+-+||..... .++.+|. ..+. .+.. -||+..+.+-.+ ..+..|
T Consensus 350 ~ts~~fHpDgLifgtgt~d-----~~vkiwdlks~~--~~a~Fpg-ht~~vk~i~FsENGY~Lat~add-----~~V~lw 416 (506)
T KOG0289|consen 350 YTSAAFHPDGLIFGTGTPD-----GVVKIWDLKSQT--NVAKFPG-HTGPVKAISFSENGYWLATAADD-----GSVKLW 416 (506)
T ss_pred eEEeeEcCCceEEeccCCC-----ceEEEEEcCCcc--ccccCCC-CCCceeEEEeccCceEEEEEecC-----CeEEEE
Confidence 3344444 67777776433 467788888765 4444443 1111 1111 255555554332 237888
Q ss_pred eCCCCeEEEeccCCCC-CceeEEEEE--CCEEEEEecCCCCCCCCeEEEEeCCCCeEEEcCCCCCCCcceEEEEECC-EE
Q 007704 473 DPREHYWTKIANMNRR-RGCHSLAVL--NGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVVKE-AI 548 (592)
Q Consensus 473 D~~t~~W~~i~~~p~~-R~~~s~v~~--~~~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~lp~~R~~~s~~v~~~-~I 548 (592)
|++... ..+..+.. ......+.+ .|..++++|.+ -.|+.|+-.+..|+.+..++..-+-...+-+++ ..
T Consensus 417 DLRKl~--n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~-----l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq 489 (506)
T KOG0289|consen 417 DLRKLK--NFKTIQLDEKKEVNSLSFDQSGTYLGIAGSD-----LQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQ 489 (506)
T ss_pred Eehhhc--ccceeeccccccceeEEEcCCCCeEEeecce-----eEEEEEecccccceeeehhhhcccccceeeecccce
Confidence 988655 22222211 112233344 46677777632 247778888999999987765554455566653 34
Q ss_pred EEEec
Q 007704 549 YVIGG 553 (592)
Q Consensus 549 yv~GG 553 (592)
|++-|
T Consensus 490 ~l~s~ 494 (506)
T KOG0289|consen 490 YLAST 494 (506)
T ss_pred EEeec
Confidence 44433
No 158
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=61.46 E-value=99 Score=33.94 Aligned_cols=149 Identities=13% Similarity=0.043 Sum_probs=77.9
Q ss_pred ceEEEEECCCCeEEECCCCCCCCcceEEEEECCEEEEEecCCCCcccceEEEEeCCCCeEEEcccccCcccceEEEEECC
Q 007704 373 NTVESYSPANDEWTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNG 452 (592)
Q Consensus 373 ~~v~~yd~~t~~W~~l~~lp~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~~~a~~~~g 452 (592)
..++.+|+.++.=..+.+.+..-..++. +-+|+-++|-.... -..++|++|..+.+-.++......-...+...-+.
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g~~~~P~f-spDG~~l~f~~~rd--g~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~ 294 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNGNNGAPAF-SPDGSKLAFSSSRD--GSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGS 294 (425)
T ss_pred ceEEEEeccCCccceeeccCCccCCccC-CCCCCEEEEEECCC--CCccEEEEcCCCCcceecccCCccccCccCCCCCC
Confidence 4577777777665555443322222222 22444334433211 24689999998877433333222222222222344
Q ss_pred EEEEEeccCCCCCCCeeEEEeCCCCeEEEeccCCCCCceeEEEEECCEEEEEecCCCCCCCCeEEEEeCCCCe-EEEcC
Q 007704 453 VLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGS-WMSGE 530 (592)
Q Consensus 453 ~IYV~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~~s~v~~~~~Lyv~GG~~~~~~~~~v~~yD~~t~~-W~~v~ 530 (592)
+|+..-. ......+++||++...=+++..-..... +-...-+++.++|-+..+.. .++..+|+.++. |+.+.
T Consensus 295 ~ivf~Sd---r~G~p~I~~~~~~g~~~~riT~~~~~~~-~p~~SpdG~~i~~~~~~~g~--~~i~~~~~~~~~~~~~lt 367 (425)
T COG0823 295 KIVFTSD---RGGRPQIYLYDLEGSQVTRLTFSGGGNS-NPVWSPDGDKIVFESSSGGQ--WDIDKNDLASGGKIRILT 367 (425)
T ss_pred EEEEEeC---CCCCcceEEECCCCCceeEeeccCCCCc-CccCCCCCCEEEEEeccCCc--eeeEEeccCCCCcEEEcc
Confidence 5544422 2233589999999887666643322222 22222255555554443222 678999998877 98875
No 159
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=61.38 E-value=2.3e+02 Score=30.24 Aligned_cols=101 Identities=20% Similarity=0.325 Sum_probs=55.2
Q ss_pred CCEEEEEecCCCCcccceEEEEeCCCCeEEEcccccC--cccceEEEEECCEEEEEeccCCCCCCCeeEEEeCCC--CeE
Q 007704 404 DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQ--KRFALAAAELNGVLYATGGYDGNEYMNSAERFDPRE--HYW 479 (592)
Q Consensus 404 ~~~Iyv~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~--~R~~~~a~~~~g~IYV~GG~~~~~~~~~v~~yD~~t--~~W 479 (592)
++.+.+.||.+ ...++++..++.|-- .++. ......+..+++.+.+.|+.++. +.++...+ ..|
T Consensus 75 ~~~l~aTGGgD-----D~AflW~~~~ge~~~--eltgHKDSVt~~~FshdgtlLATGdmsG~-----v~v~~~stg~~~~ 142 (399)
T KOG0296|consen 75 NNNLVATGGGD-----DLAFLWDISTGEFAG--ELTGHKDSVTCCSFSHDGTLLATGDMSGK-----VLVFKVSTGGEQW 142 (399)
T ss_pred CCceEEecCCC-----ceEEEEEccCCccee--EecCCCCceEEEEEccCceEEEecCCCcc-----EEEEEcccCceEE
Confidence 56777888876 355788888887632 1221 12234445568888999887653 44444433 345
Q ss_pred EEeccCCCCCceeEEEEE-CCEEEEEecCCCCCCCCeEEEEeCCCC
Q 007704 480 TKIANMNRRRGCHSLAVL-NGKLYALGGFDGSAMVPSIEVYDPRLG 524 (592)
Q Consensus 480 ~~i~~~p~~R~~~s~v~~-~~~Lyv~GG~~~~~~~~~v~~yD~~t~ 524 (592)
.....+..--. +.-+ ...|+++|-.++ ++|.|.....
T Consensus 143 ~~~~e~~dieW---l~WHp~a~illAG~~DG-----svWmw~ip~~ 180 (399)
T KOG0296|consen 143 KLDQEVEDIEW---LKWHPRAHILLAGSTDG-----SVWMWQIPSQ 180 (399)
T ss_pred EeecccCceEE---EEecccccEEEeecCCC-----cEEEEECCCc
Confidence 54322211000 1111 234666766543 5788877664
No 160
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=60.52 E-value=57 Score=36.61 Aligned_cols=119 Identities=17% Similarity=0.198 Sum_probs=67.8
Q ss_pred CCCccCcceEEEEE--CCEEEEEeeCCCCCCcceEEEEECCCCeEEECCCCCCCCcceEEEEE--CCEEEEEecCCCCcc
Q 007704 343 PMSSARSYASAAML--NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATI--DNKIFAIGGGNGLEC 418 (592)
Q Consensus 343 p~p~~R~~~s~v~~--~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~lp~~r~~~~~~~~--~~~Iyv~GG~~~~~~ 418 (592)
.+-.|+.+..++.. .-.||+.|-. ++||++|+..+.|-. ++...-...-++.+ -+.++++||.+
T Consensus 129 ~~RIP~~GRDm~y~~~scDly~~gsg------~evYRlNLEqGrfL~--P~~~~~~~lN~v~in~~hgLla~Gt~~---- 196 (703)
T KOG2321|consen 129 RTRIPKFGRDMKYHKPSCDLYLVGSG------SEVYRLNLEQGRFLN--PFETDSGELNVVSINEEHGLLACGTED---- 196 (703)
T ss_pred eeecCcCCccccccCCCccEEEeecC------cceEEEEcccccccc--ccccccccceeeeecCccceEEecccC----
Confidence 34457777777766 4457776643 579999999999943 22222222233333 35688888854
Q ss_pred cceEEEEeCCCCeEEE-------cccccCccc--ceEEEEE-CCEEEEEeccCCCCCCCeeEEEeCCCCe
Q 007704 419 FSDVEMLDLDIGKWIR-------TRSMLQKRF--ALAAAEL-NGVLYATGGYDGNEYMNSAERFDPREHY 478 (592)
Q Consensus 419 ~~~v~~yD~~t~~W~~-------i~~~p~~R~--~~~a~~~-~g~IYV~GG~~~~~~~~~v~~yD~~t~~ 478 (592)
..|+.+|+.+..-.. +++.|..-. ..++..+ ++-|-+.-|.. ...+++||+.+.+
T Consensus 197 -g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts----~G~v~iyDLRa~~ 261 (703)
T KOG2321|consen 197 -GVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS----TGSVLIYDLRASK 261 (703)
T ss_pred -ceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeecc----CCcEEEEEcccCC
Confidence 478888887654321 122332222 2333334 33555544532 2457899988754
No 161
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=60.04 E-value=2.4e+02 Score=30.20 Aligned_cols=133 Identities=16% Similarity=0.119 Sum_probs=68.5
Q ss_pred ceEEEEECCCCeE-EECCCCCCCCcceEEEEE---CCEEEEEecCCCCcccceEEEEeCCCCeEEEcccccCcccceEEE
Q 007704 373 NTVESYSPANDEW-TSRPSLNGTKGSLAGATI---DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAA 448 (592)
Q Consensus 373 ~~v~~yd~~t~~W-~~l~~lp~~r~~~~~~~~---~~~Iyv~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~~~a~ 448 (592)
+.+.+.|..+.+- ..++... ..|..... +..+|+.+. + ..+-++|+.+++ .+...+........+
T Consensus 16 ~~v~viD~~t~~~~~~i~~~~---~~h~~~~~s~Dgr~~yv~~r-d-----g~vsviD~~~~~--~v~~i~~G~~~~~i~ 84 (369)
T PF02239_consen 16 GSVAVIDGATNKVVARIPTGG---APHAGLKFSPDGRYLYVANR-D-----GTVSVIDLATGK--VVATIKVGGNPRGIA 84 (369)
T ss_dssp TEEEEEETTT-SEEEEEE-ST---TEEEEEE-TT-SSEEEEEET-T-----SEEEEEETTSSS--EEEEEE-SSEEEEEE
T ss_pred CEEEEEECCCCeEEEEEcCCC---CceeEEEecCCCCEEEEEcC-C-----CeEEEEECCccc--EEEEEecCCCcceEE
Confidence 5788888887653 3443322 22444433 345888853 2 368899999887 444455555444444
Q ss_pred EE-CCEEEEEeccCCCCCCCeeEEEeCCCCeEE-Eec--cC----CCCCceeEEEEECCEEEEEecCCCCCCCCeEEEEe
Q 007704 449 EL-NGVLYATGGYDGNEYMNSAERFDPREHYWT-KIA--NM----NRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYD 520 (592)
Q Consensus 449 ~~-~g~IYV~GG~~~~~~~~~v~~yD~~t~~W~-~i~--~~----p~~R~~~s~v~~~~~Lyv~GG~~~~~~~~~v~~yD 520 (592)
.. +|+..+++.+. .+++.++|.++..=. .++ .+ +.+|...-.....+..|++--. ....+|..|
T Consensus 85 ~s~DG~~~~v~n~~----~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lk----d~~~I~vVd 156 (369)
T PF02239_consen 85 VSPDGKYVYVANYE----PGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLK----DTGEIWVVD 156 (369)
T ss_dssp E--TTTEEEEEEEE----TTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEET----TTTEEEEEE
T ss_pred EcCCCCEEEEEecC----CCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEc----cCCeEEEEE
Confidence 43 55544444432 257889998876532 222 22 2334322222235555666433 245788888
Q ss_pred CCCC
Q 007704 521 PRLG 524 (592)
Q Consensus 521 ~~t~ 524 (592)
....
T Consensus 157 y~d~ 160 (369)
T PF02239_consen 157 YSDP 160 (369)
T ss_dssp TTTS
T ss_pred eccc
Confidence 6653
No 162
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=59.85 E-value=2e+02 Score=29.12 Aligned_cols=149 Identities=16% Similarity=0.235 Sum_probs=76.5
Q ss_pred CeEEECCCCCC-----CCcceE-EEEECCEEEEEecCCCCcccceEEEEeCCCCeEEEcccccCcccceEEEEEC--CEE
Q 007704 383 DEWTSRPSLNG-----TKGSLA-GATIDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELN--GVL 454 (592)
Q Consensus 383 ~~W~~l~~lp~-----~r~~~~-~~~~~~~Iyv~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~~~a~~~~--g~I 454 (592)
..|+..+++.. |-...- ..--.|.|+..||. ..++..|+++++.+..-. ...-+-|+.+.-+ +.|
T Consensus 99 ~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD------~~~y~~dlE~G~i~r~~r-GHtDYvH~vv~R~~~~qi 171 (325)
T KOG0649|consen 99 RLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGD------GVIYQVDLEDGRIQREYR-GHTDYVHSVVGRNANGQI 171 (325)
T ss_pred hhhhhcCccccCcccCCccceeEeccCCCcEEEecCC------eEEEEEEecCCEEEEEEc-CCcceeeeeeecccCcce
Confidence 45766665543 222222 22236889888872 467888999998765421 1223556665532 333
Q ss_pred EEEeccCCCCCCCeeEEEeCCCCeEEEe-cc-----CCCCCcee--EEEEECCEEEEEecCCCCCCCCeEEEEeCCCCeE
Q 007704 455 YATGGYDGNEYMNSAERFDPREHYWTKI-AN-----MNRRRGCH--SLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGSW 526 (592)
Q Consensus 455 YV~GG~~~~~~~~~v~~yD~~t~~W~~i-~~-----~p~~R~~~--s~v~~~~~Lyv~GG~~~~~~~~~v~~yD~~t~~W 526 (592)
+.|+-++ ++-++|.++.+-..+ .+ ...|..+- .++..+..-++.||- ..+-.+++...+-
T Consensus 172 -lsG~EDG-----tvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgG------p~lslwhLrsse~ 239 (325)
T KOG0649|consen 172 -LSGAEDG-----TVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGG------PKLSLWHLRSSES 239 (325)
T ss_pred -eecCCCc-----cEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCC------CceeEEeccCCCc
Confidence 3454443 466788888775443 22 22222222 334445555555552 2344566666555
Q ss_pred EEcCCCCCCCcceEEEEECCEEEEEe
Q 007704 527 MSGEPMKLSRGYLGAAVVKEAIYVIG 552 (592)
Q Consensus 527 ~~v~~lp~~R~~~s~~v~~~~Iyv~G 552 (592)
+.+-+.|.+ -+-+...++.+++.|
T Consensus 240 t~vfpipa~--v~~v~F~~d~vl~~G 263 (325)
T KOG0649|consen 240 TCVFPIPAR--VHLVDFVDDCVLIGG 263 (325)
T ss_pred eEEEecccc--eeEeeeecceEEEec
Confidence 555444332 233344445555544
No 163
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=59.74 E-value=2.9e+02 Score=33.65 Aligned_cols=167 Identities=10% Similarity=0.056 Sum_probs=95.4
Q ss_pred CCCcceEEEEECCCCeEEECCCCCCCCcceEEEEE-----CCE-EEEEecCCCCcc------cceEEEEeCC--CCeEEE
Q 007704 369 NSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATI-----DNK-IFAIGGGNGLEC------FSDVEMLDLD--IGKWIR 434 (592)
Q Consensus 369 ~~~~~~v~~yd~~t~~W~~l~~lp~~r~~~~~~~~-----~~~-Iyv~GG~~~~~~------~~~v~~yD~~--t~~W~~ 434 (592)
..|.+.+.++|+.+++-..+-.++..-..++++.. +.. +..+|+..+... ...++.|+.. .++-+.
T Consensus 849 ~~w~s~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lel 928 (1205)
T KOG1898|consen 849 NGWVSSIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLEL 928 (1205)
T ss_pred cCccceEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeee
Confidence 34777888899888776655444444333333332 333 566666433221 2346777653 234444
Q ss_pred cccccCcccceEEEEECCEEEEEeccCCCCCCCeeEEEeCCCCeEEEeccCCC-CCceeEEEEECCEEEEEecCCCCCCC
Q 007704 435 TRSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNR-RRGCHSLAVLNGKLYALGGFDGSAMV 513 (592)
Q Consensus 435 i~~~p~~R~~~~a~~~~g~IYV~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~-~R~~~s~v~~~~~Lyv~GG~~~~~~~ 513 (592)
+.....+-.-++++.+.|.+++--| +.+++||+-..+-.+...... +-.-........+|+|-.- ...
T Consensus 929 lh~T~~~~~v~Ai~~f~~~~LagvG-------~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~~RI~VgD~----qeS 997 (1205)
T KOG1898|consen 929 LHKTEIPGPVGAICPFQGRVLAGVG-------RFLRLYDLGKKKLLRKCELKFIPNRISSIQTYGARIVVGDI----QES 997 (1205)
T ss_pred eeccCCCccceEEeccCCEEEEecc-------cEEEEeeCChHHHHhhhhhccCceEEEEEeecceEEEEeec----cce
Confidence 4444455555677778886666545 678889887654332221111 2222233344566665322 122
Q ss_pred CeEEEEeCCCCeEEEcCCCCCCCcceEEEEECC
Q 007704 514 PSIEVYDPRLGSWMSGEPMKLSRGYLGAAVVKE 546 (592)
Q Consensus 514 ~~v~~yD~~t~~W~~v~~lp~~R~~~s~~v~~~ 546 (592)
-.+.+|+++.++......-|.||.-.++..++.
T Consensus 998 V~~~~y~~~~n~l~~fadD~~pR~Vt~~~~lD~ 1030 (1205)
T KOG1898|consen 998 VHFVRYRREDNQLIVFADDPVPRHVTALELLDY 1030 (1205)
T ss_pred EEEEEEecCCCeEEEEeCCCccceeeEEEEecC
Confidence 346789999999888888888887766666543
No 164
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=57.18 E-value=2.3e+02 Score=28.87 Aligned_cols=142 Identities=16% Similarity=0.143 Sum_probs=74.2
Q ss_pred CCEEEEEecCCCCcccceEEEEeCCCCeEEEcccccCcccceEEE--EECCEEEEEeccCCCCCCCeeEEEeCCCCeEEE
Q 007704 404 DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAA--ELNGVLYATGGYDGNEYMNSAERFDPREHYWTK 481 (592)
Q Consensus 404 ~~~Iyv~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~~~a~--~~~g~IYV~GG~~~~~~~~~v~~yD~~t~~W~~ 481 (592)
+++.++.+| ...+-+||+.++.=.++...-..+..-+++ ..+|+....||-++ .+-++|++.-.-++
T Consensus 51 dk~~LAaa~------~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDg-----t~kIWdlR~~~~qR 119 (311)
T KOG0315|consen 51 DKKDLAAAG------NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDG-----TVKIWDLRSLSCQR 119 (311)
T ss_pred Ccchhhhcc------CCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCc-----eEEEEeccCcccch
Confidence 556666665 357889999876432222222232333333 34778777777664 45677777644444
Q ss_pred eccCCCCCceeEEEEE-CCEEEEEecCCCCCCCCeEEEEeCCCCeEEEcCCCCCCCc-ceEEEEE-CCEEEEEecccCCC
Q 007704 482 IANMNRRRGCHSLAVL-NGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRG-YLGAAVV-KEAIYVIGGVKNGS 558 (592)
Q Consensus 482 i~~~p~~R~~~s~v~~-~~~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~lp~~R~-~~s~~v~-~~~Iyv~GG~~~~~ 558 (592)
.-..+.+. -++|.+ +..=++.|-.+ ..|+++|+.++...... +|..-. -.++++. +++++ +++.+.
T Consensus 120 ~~~~~spV--n~vvlhpnQteLis~dqs-----g~irvWDl~~~~c~~~l-iPe~~~~i~sl~v~~dgsml-~a~nnk-- 188 (311)
T KOG0315|consen 120 NYQHNSPV--NTVVLHPNQTELISGDQS-----GNIRVWDLGENSCTHEL-IPEDDTSIQSLTVMPDGSML-AAANNK-- 188 (311)
T ss_pred hccCCCCc--ceEEecCCcceEEeecCC-----CcEEEEEccCCcccccc-CCCCCcceeeEEEcCCCcEE-EEecCC--
Confidence 33333332 234444 33334444433 35899999998765532 233222 2334444 44444 344433
Q ss_pred ccccEEEEEcCC
Q 007704 559 EIVDTVERFKEG 570 (592)
Q Consensus 559 ~~~~~v~~Yd~~ 570 (592)
..+++++.-
T Consensus 189 ---G~cyvW~l~ 197 (311)
T KOG0315|consen 189 ---GNCYVWRLL 197 (311)
T ss_pred ---ccEEEEEcc
Confidence 236777643
No 165
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=56.59 E-value=3.3e+02 Score=30.49 Aligned_cols=106 Identities=20% Similarity=0.311 Sum_probs=54.4
Q ss_pred cceEEEEE--CCEEEEEecCCCCcccceEEEEeCCCCeEEEcccccCcccc-eEEEEECCEEEEEeccCCCCCCCeeEEE
Q 007704 396 GSLAGATI--DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFA-LAAAELNGVLYATGGYDGNEYMNSAERF 472 (592)
Q Consensus 396 ~~~~~~~~--~~~Iyv~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~-~~a~~~~g~IYV~GG~~~~~~~~~v~~y 472 (592)
...+.+.+ +|..+++|-. ...+++||..+.+ .+..+...... .++...++.+...|+.++. +..+
T Consensus 218 ~~vtSv~ws~~G~~LavG~~-----~g~v~iwD~~~~k--~~~~~~~~h~~rvg~laW~~~~lssGsr~~~-----I~~~ 285 (484)
T KOG0305|consen 218 ELVTSVKWSPDGSHLAVGTS-----DGTVQIWDVKEQK--KTRTLRGSHASRVGSLAWNSSVLSSGSRDGK-----ILNH 285 (484)
T ss_pred CceEEEEECCCCCEEEEeec-----CCeEEEEehhhcc--ccccccCCcCceeEEEeccCceEEEecCCCc-----EEEE
Confidence 33444444 5788888743 3478899987653 33333331222 2233457888888876643 4455
Q ss_pred eCCCCeEEEeccCCCCCceeEEEEE----CCEEEEEecCCCCCCCCeEEEEeC
Q 007704 473 DPREHYWTKIANMNRRRGCHSLAVL----NGKLYALGGFDGSAMVPSIEVYDP 521 (592)
Q Consensus 473 D~~t~~W~~i~~~p~~R~~~s~v~~----~~~Lyv~GG~~~~~~~~~v~~yD~ 521 (592)
|.....=. +..+.. ....+|.+ ++..+.-||.+ +.+.+||.
T Consensus 286 dvR~~~~~-~~~~~~--H~qeVCgLkws~d~~~lASGgnD-----N~~~Iwd~ 330 (484)
T KOG0305|consen 286 DVRISQHV-VSTLQG--HRQEVCGLKWSPDGNQLASGGND-----NVVFIWDG 330 (484)
T ss_pred EEecchhh-hhhhhc--ccceeeeeEECCCCCeeccCCCc-----cceEeccC
Confidence 54322100 000111 11122222 56667777755 35677776
No 166
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=54.64 E-value=3.2e+02 Score=29.76 Aligned_cols=196 Identities=14% Similarity=0.136 Sum_probs=91.1
Q ss_pred eEEEEECCEEEEEeeCCCCCCcceEEEEECCCCeEEECCCCC-CCCcceEEEEE-CCEEEEEecCCCCcccceEEEEeCC
Q 007704 351 ASAAMLNGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLN-GTKGSLAGATI-DNKIFAIGGGNGLECFSDVEMLDLD 428 (592)
Q Consensus 351 ~s~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~lp-~~r~~~~~~~~-~~~Iyv~GG~~~~~~~~~v~~yD~~ 428 (592)
.++...++..|++|-. ..++.=.-.-.+|+.++..+ .+-.......+ ++.++++|.. ..+++-+-.
T Consensus 140 ~~v~f~~~~g~~vG~~------G~il~T~DgG~tW~~~~~~~~~p~~~~~i~~~~~~~~~ivg~~------G~v~~S~D~ 207 (398)
T PLN00033 140 NSISFKGKEGWIIGKP------AILLHTSDGGETWERIPLSPKLPGEPVLIKATGPKSAEMVTDE------GAIYVTSNA 207 (398)
T ss_pred eeeEEECCEEEEEcCc------eEEEEEcCCCCCceECccccCCCCCceEEEEECCCceEEEecc------ceEEEECCC
Confidence 3444457778887542 13333344567899875422 11112233334 4567888742 234444445
Q ss_pred CCeEEEccccc----Ccc--------------cceEEEE-ECCEEEEEeccCCCCCCCeeEE-EeCCCCeEEEeccCCCC
Q 007704 429 IGKWIRTRSML----QKR--------------FALAAAE-LNGVLYATGGYDGNEYMNSAER-FDPREHYWTKIANMNRR 488 (592)
Q Consensus 429 t~~W~~i~~~p----~~R--------------~~~~a~~-~~g~IYV~GG~~~~~~~~~v~~-yD~~t~~W~~i~~~p~~ 488 (592)
-.+|+.+...+ ..+ ....+.. -++.++++|-. -.+++ .|.-...|+.+......
T Consensus 208 G~tW~~~~~~t~~~~l~~~~~s~~~g~~~y~Gsf~~v~~~~dG~~~~vg~~------G~~~~s~d~G~~~W~~~~~~~~~ 281 (398)
T PLN00033 208 GRNWKAAVEETVSATLNRTVSSGISGASYYTGTFSTVNRSPDGDYVAVSSR------GNFYLTWEPGQPYWQPHNRASAR 281 (398)
T ss_pred CCCceEcccccccccccccccccccccceeccceeeEEEcCCCCEEEEECC------ccEEEecCCCCcceEEecCCCcc
Confidence 56898762111 111 0011111 23444444421 12232 23333348887644433
Q ss_pred CceeEEEEECCEEEEEecCCCCCCCCeEEEEeCCCCeE-----EEcCCCCCCCcceEEEEE-CCEEEEEecccCCCcccc
Q 007704 489 RGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGSW-----MSGEPMKLSRGYLGAAVV-KEAIYVIGGVKNGSEIVD 562 (592)
Q Consensus 489 R~~~s~v~~~~~Lyv~GG~~~~~~~~~v~~yD~~t~~W-----~~v~~lp~~R~~~s~~v~-~~~Iyv~GG~~~~~~~~~ 562 (592)
+........++.+++.|... .+..-+..-..| ..+.....+....++... ++.++++|.. +
T Consensus 282 ~l~~v~~~~dg~l~l~g~~G------~l~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~-G------ 348 (398)
T PLN00033 282 RIQNMGWRADGGLWLLTRGG------GLYVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGS-G------ 348 (398)
T ss_pred ceeeeeEcCCCCEEEEeCCc------eEEEecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECC-C------
Confidence 33222233478888876531 233333333334 443221111222333333 5678887764 2
Q ss_pred EEEEEcCC-CcEEEcc
Q 007704 563 TVERFKEG-QGWEEIN 577 (592)
Q Consensus 563 ~v~~Yd~~-~~W~~v~ 577 (592)
.++.-... .+|+.+.
T Consensus 349 ~v~~s~D~G~tW~~~~ 364 (398)
T PLN00033 349 ILLRSTDGGKSWKRDK 364 (398)
T ss_pred cEEEeCCCCcceeEcc
Confidence 24444444 8898875
No 167
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=53.52 E-value=1.3e+02 Score=32.61 Aligned_cols=134 Identities=11% Similarity=0.025 Sum_probs=61.7
Q ss_pred CcceEEEEECCCCeEEECCCCCCCCcceEEEE-ECCEEEEEecCCCCccc-ceEEEEeCCCCeEEEcc-cccCcccceEE
Q 007704 371 WHNTVESYSPANDEWTSRPSLNGTKGSLAGAT-IDNKIFAIGGGNGLECF-SDVEMLDLDIGKWIRTR-SMLQKRFALAA 447 (592)
Q Consensus 371 ~~~~v~~yd~~t~~W~~l~~lp~~r~~~~~~~-~~~~Iyv~GG~~~~~~~-~~v~~yD~~t~~W~~i~-~~p~~R~~~~a 447 (592)
....+...|..+++.+.+-.-..- -+|.-.+ .+..+++|--....... ..+|..|.......++. .++....+|--
T Consensus 166 p~~~i~~idl~tG~~~~v~~~~~w-lgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEf 244 (386)
T PF14583_consen 166 PHCRIFTIDLKTGERKVVFEDTDW-LGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEF 244 (386)
T ss_dssp --EEEEEEETTT--EEEEEEESS--EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEE
T ss_pred CCceEEEEECCCCceeEEEecCcc-ccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCccccccc
Confidence 345677777777776554111110 1122222 24445555222122222 47899998776666653 33333344544
Q ss_pred EEECCE-EEEEeccCCCCCCCeeEEEeCCCCeEEEeccCCCCCceeEEEEECCEEEEEecCC
Q 007704 448 AELNGV-LYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFD 508 (592)
Q Consensus 448 ~~~~g~-IYV~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~~s~v~~~~~Lyv~GG~~ 508 (592)
-.-+|. |+..+... .+.-.-+..||+.+..=+.+..+| ++.|-+...+++|++-.|.+
T Consensus 245 w~~DG~~i~y~~~~~-~~~~~~i~~~d~~t~~~~~~~~~p--~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 245 WVPDGSTIWYDSYTP-GGQDFWIAGYDPDTGERRRLMEMP--WCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp E-TTSS-EEEEEEET-TT--EEEEEE-TTT--EEEEEEE---SEEEEEE-TTSSEEEEEE--
T ss_pred ccCCCCEEEEEeecC-CCCceEEEeeCCCCCCceEEEeCC--ceeeeEEcCCCCEEEecCCC
Confidence 444554 43333322 233345788999987544455554 57788888899999887764
No 168
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=52.55 E-value=4.6e+02 Score=31.16 Aligned_cols=34 Identities=15% Similarity=0.188 Sum_probs=23.7
Q ss_pred eEEEEECCEEEEEeccCCCCCCCeeEEEeCCCCe--EEEecc
Q 007704 445 LAAAELNGVLYATGGYDGNEYMNSAERFDPREHY--WTKIAN 484 (592)
Q Consensus 445 ~~a~~~~g~IYV~GG~~~~~~~~~v~~yD~~t~~--W~~i~~ 484 (592)
.+-+++++.||+.... +.++.+|.++++ |+.-+.
T Consensus 188 ~TPlvvgg~lYv~t~~------~~V~ALDa~TGk~lW~~d~~ 223 (764)
T TIGR03074 188 ATPLKVGDTLYLCTPH------NKVIALDAATGKEKWKFDPK 223 (764)
T ss_pred cCCEEECCEEEEECCC------CeEEEEECCCCcEEEEEcCC
Confidence 3445679999997542 468888888765 876543
No 169
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=52.54 E-value=3e+02 Score=28.89 Aligned_cols=164 Identities=17% Similarity=0.113 Sum_probs=81.7
Q ss_pred eEEEEE-C-CEEEEEecCCCCcccceEEEEeCCCCe--EEEcccccCc-ccceEE-EEE--CCEEEEEeccCCCCCCCee
Q 007704 398 LAGATI-D-NKIFAIGGGNGLECFSDVEMLDLDIGK--WIRTRSMLQK-RFALAA-AEL--NGVLYATGGYDGNEYMNSA 469 (592)
Q Consensus 398 ~~~~~~-~-~~Iyv~GG~~~~~~~~~v~~yD~~t~~--W~~i~~~p~~-R~~~~a-~~~--~g~IYV~GG~~~~~~~~~v 469 (592)
|.+... + ..+|+..= -...+++|+....+ ......+..+ -.++.- +.. +..+||..-.+ +.+
T Consensus 147 H~v~~~pdg~~v~v~dl-----G~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s-----~~v 216 (345)
T PF10282_consen 147 HQVVFSPDGRFVYVPDL-----GADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELS-----NTV 216 (345)
T ss_dssp EEEEE-TTSSEEEEEET-----TTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTT-----TEE
T ss_pred eeEEECCCCCEEEEEec-----CCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCC-----CcE
Confidence 444443 4 45777631 23678888887665 6553322211 122222 222 45789987543 556
Q ss_pred EEEeCC--CCeEEEe---ccCCC---CC-ceeEEEEE--CCEEEEEecCCCCCCCCeEEEEeC--CCCeEEEcCCCCCC-
Q 007704 470 ERFDPR--EHYWTKI---ANMNR---RR-GCHSLAVL--NGKLYALGGFDGSAMVPSIEVYDP--RLGSWMSGEPMKLS- 535 (592)
Q Consensus 470 ~~yD~~--t~~W~~i---~~~p~---~R-~~~s~v~~--~~~Lyv~GG~~~~~~~~~v~~yD~--~t~~W~~v~~lp~~- 535 (592)
.+|+.. ++.|+.+ +.+|. .. ..+.++.. +..||+.-.. .+.|.+|+. .+.+.+.+...+..
T Consensus 217 ~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~-----~~sI~vf~~d~~~g~l~~~~~~~~~G 291 (345)
T PF10282_consen 217 SVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG-----SNSISVFDLDPATGTLTLVQTVPTGG 291 (345)
T ss_dssp EEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT-----TTEEEEEEECTTTTTEEEEEEEEESS
T ss_pred EEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc-----CCEEEEEEEecCCCceEEEEEEeCCC
Confidence 665554 7777654 33332 22 23333434 4567776432 467777776 45566666544432
Q ss_pred CcceEEEEE-C-CEEEEEecccCCCccccEEEEEc--CC-CcEEEccc-cCCC
Q 007704 536 RGYLGAAVV-K-EAIYVIGGVKNGSEIVDTVERFK--EG-QGWEEINS-RAIG 582 (592)
Q Consensus 536 R~~~s~~v~-~-~~Iyv~GG~~~~~~~~~~v~~Yd--~~-~~W~~v~~-~p~~ 582 (592)
.....++.- + ..||| ++..+ +.|.+|+ .+ ..+..+.. .+++
T Consensus 292 ~~Pr~~~~s~~g~~l~V-a~~~s-----~~v~vf~~d~~tG~l~~~~~~~~~~ 338 (345)
T PF10282_consen 292 KFPRHFAFSPDGRYLYV-ANQDS-----NTVSVFDIDPDTGKLTPVGSSVPIP 338 (345)
T ss_dssp SSEEEEEE-TTSSEEEE-EETTT-----TEEEEEEEETTTTEEEEEEEEEESS
T ss_pred CCccEEEEeCCCCEEEE-EecCC-----CeEEEEEEeCCCCcEEEecccccCC
Confidence 222233332 4 44555 44332 4577775 45 77877753 3443
No 170
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=51.92 E-value=3.1e+02 Score=28.81 Aligned_cols=149 Identities=17% Similarity=0.170 Sum_probs=75.4
Q ss_pred CCEEEEEeeCC-CCCCcceEEEEECCCCeEEECCCCCCC------CcceEEEEECCEEEEEecCCCCcccceEEEEeCCC
Q 007704 357 NGELYIFGGGD-GNSWHNTVESYSPANDEWTSRPSLNGT------KGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDI 429 (592)
Q Consensus 357 ~~~Iyv~GG~~-~~~~~~~v~~yd~~t~~W~~l~~lp~~------r~~~~~~~~~~~Iyv~GG~~~~~~~~~v~~yD~~t 429 (592)
-+.+-++||.. +....|.+.++|-....-..-.....+ |..+-++++.++|||+-=.+ ....+..+|.
T Consensus 58 ~N~laLVGGg~~pky~pNkviIWDD~k~~~i~el~f~~~I~~V~l~r~riVvvl~~~I~VytF~~---n~k~l~~~et-- 132 (346)
T KOG2111|consen 58 SNYLALVGGGSRPKYPPNKVIIWDDLKERCIIELSFNSEIKAVKLRRDRIVVVLENKIYVYTFPD---NPKLLHVIET-- 132 (346)
T ss_pred hceEEEecCCCCCCCCCceEEEEecccCcEEEEEEeccceeeEEEcCCeEEEEecCeEEEEEcCC---Chhheeeeec--
Confidence 46677778766 667789999999554433211111111 44566777788888773110 1122222222
Q ss_pred CeEEEcccccCcccceEEEEE-CCEEEEEeccCCCCCCCeeEEEeCCCCeEEEeccCCCCCceeEEEEE--CCEEEEEec
Q 007704 430 GKWIRTRSMLQKRFALAAAEL-NGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL--NGKLYALGG 506 (592)
Q Consensus 430 ~~W~~i~~~p~~R~~~~a~~~-~g~IYV~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~~s~v~~--~~~Lyv~GG 506 (592)
..-|+..++++.. +..+.++=|... ..+.+-|+...+-......+.--..-+++.+ +|.++..+.
T Consensus 133 --------~~NPkGlC~~~~~~~k~~LafPg~k~----GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaS 200 (346)
T KOG2111|consen 133 --------RSNPKGLCSLCPTSNKSLLAFPGFKT----GQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATAS 200 (346)
T ss_pred --------ccCCCceEeecCCCCceEEEcCCCcc----ceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEec
Confidence 2223334444433 556777777543 3456666654332100001111222233333 677777766
Q ss_pred CCCCCCCCeEEEEeCCCCeE
Q 007704 507 FDGSAMVPSIEVYDPRLGSW 526 (592)
Q Consensus 507 ~~~~~~~~~v~~yD~~t~~W 526 (592)
..|. -|-+||+.+++-
T Consensus 201 tkGT----LIRIFdt~~g~~ 216 (346)
T KOG2111|consen 201 TKGT----LIRIFDTEDGTL 216 (346)
T ss_pred cCcE----EEEEEEcCCCcE
Confidence 5432 356788877653
No 171
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=50.63 E-value=58 Score=26.45 Aligned_cols=43 Identities=26% Similarity=0.362 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHhhhh
Q 007704 263 SIINELIKEVAELKAFKTEQTLKMKELEQKLVDAEAEIQRLKE 305 (592)
Q Consensus 263 ~~i~~l~~e~~~l~~~~~~~~~~~~~l~~~~~~~~rki~~l~e 305 (592)
+.|++|++|-++|-+....+...|..|+......+..+..+..
T Consensus 12 e~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~ 54 (74)
T PF12329_consen 12 EQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKK 54 (74)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688888888888888888888888888888888777766654
No 172
>KOG3637 consensus Vitronectin receptor, alpha subunit [Extracellular structures]
Probab=49.88 E-value=2.6e+02 Score=34.42 Aligned_cols=149 Identities=15% Similarity=0.112 Sum_probs=82.9
Q ss_pred CcceEEEEECCEEEEEeeCCCCCCcceEEEEECC-C----CeEEECCCCCCCCc-c--eEEEE--E--CCEEEEEecCCC
Q 007704 348 RSYASAAMLNGELYIFGGGDGNSWHNTVESYSPA-N----DEWTSRPSLNGTKG-S--LAGAT--I--DNKIFAIGGGNG 415 (592)
Q Consensus 348 R~~~s~v~~~~~Iyv~GG~~~~~~~~~v~~yd~~-t----~~W~~l~~lp~~r~-~--~~~~~--~--~~~Iyv~GG~~~ 415 (592)
-.+++++..++.-+++|.-....|...++.+... . ..+...+.....+. + +++++ . ++.+-++.|...
T Consensus 211 Q~GfSa~~t~~~~v~lGApG~~~W~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~sYLGYsV~~g~f~~~~~~~~VaGAPr 290 (1030)
T KOG3637|consen 211 QAGFSAAFTDEDGLVLGAPGAYYWKGGVFLYQSNLTLRHVTFINLLPENADRDDSYLGYSVAVGVFSGPGTISFVAGAPR 290 (1030)
T ss_pred ccccceeecCCCcEEEeCCccccccCeEEEeccccccccccccccCccccccccceeeEEEEeeeccCCCceEEEecCcc
Confidence 4467777776667778876667777888888864 1 11222222222212 2 23321 1 334555555444
Q ss_pred Ccc-cceEEEEeCCCCeEEEccccc----CcccceEEEEEC----C--EEEEEec--cCC--CCCCCeeEEEeCCCCe-E
Q 007704 416 LEC-FSDVEMLDLDIGKWIRTRSML----QKRFALAAAELN----G--VLYATGG--YDG--NEYMNSAERFDPREHY-W 479 (592)
Q Consensus 416 ~~~-~~~v~~yD~~t~~W~~i~~~p----~~R~~~~a~~~~----g--~IYV~GG--~~~--~~~~~~v~~yD~~t~~-W 479 (592)
... .-.+++|+...+.|+.+..+. ...+++++|+.+ | - .++|- +.. ...--.|++|=-.... |
T Consensus 291 ~~~~~G~v~if~~~~~~~~~~~~~~GeQ~GSYFG~sl~~vDlNgDG~tD-LLVGAP~y~~~~~~e~GrVYVy~~~~~~~~ 369 (1030)
T KOG3637|consen 291 YNHTGGKVYIFQLSGKSLRPLQVLRGEQIGSYFGYSLAAVDLNGDGLTD-LLVGAPLYFERDRYEVGRVYVYLNGGLGLF 369 (1030)
T ss_pred ccCcccEEEEEeccccccceeeeeeeeeehhhcCeeEEEEEcCCCCCcc-eEEecCccccCCCCcceEEEEEEecCCCCc
Confidence 343 478999999988888776543 355777777761 1 1 33332 111 1223457777544423 2
Q ss_pred EE---e--ccCCCCCceeEEEEE
Q 007704 480 TK---I--ANMNRRRGCHSLAVL 497 (592)
Q Consensus 480 ~~---i--~~~p~~R~~~s~v~~ 497 (592)
.. + +.-+..|++.+++.+
T Consensus 370 ~~~~~L~~~~~~~~RFG~Ala~L 392 (1030)
T KOG3637|consen 370 PEQITLRGPGGPSGRFGSALAAL 392 (1030)
T ss_pred ccceeEecCCCcccchhhhhhcc
Confidence 21 1 233567999998876
No 173
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=49.81 E-value=2.3e+02 Score=31.70 Aligned_cols=104 Identities=23% Similarity=0.328 Sum_probs=62.5
Q ss_pred CCEEEEEeeCCCCCCcceEEEEECCCCeEEECCCCCCCCcceEEEEE--CCEEEEEecCCCCcccceEEEEeCCCCeEEE
Q 007704 357 NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATI--DNKIFAIGGGNGLECFSDVEMLDLDIGKWIR 434 (592)
Q Consensus 357 ~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~lp~~r~~~~~~~~--~~~Iyv~GG~~~~~~~~~v~~yD~~t~~W~~ 434 (592)
++...++||.++ .+.+|-+..+.-.+...+...|...+.+.+ ++..++.|- ....+..||..++.= .
T Consensus 454 ~~~~vaVGG~Dg-----kvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~D-----a~rkvv~yd~~s~~~-~ 522 (603)
T KOG0318|consen 454 DGSEVAVGGQDG-----KVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGD-----ASRKVVLYDVASREV-K 522 (603)
T ss_pred CCCEEEEecccc-----eEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEec-----cCCcEEEEEcccCce-e
Confidence 788999999885 378888887665554445555666666666 566666653 345777888776532 1
Q ss_pred cccc--cCcccceEEEEECCEEEEEeccCCCCCCCeeEEEeCCC
Q 007704 435 TRSM--LQKRFALAAAELNGVLYATGGYDGNEYMNSAERFDPRE 476 (592)
Q Consensus 435 i~~~--p~~R~~~~a~~~~g~IYV~GG~~~~~~~~~v~~yD~~t 476 (592)
...+ ..+|...-+=.-++++...|+.+ ..+.+|+.+.
T Consensus 523 ~~~w~FHtakI~~~aWsP~n~~vATGSlD-----t~Viiysv~k 561 (603)
T KOG0318|consen 523 TNRWAFHTAKINCVAWSPNNKLVATGSLD-----TNVIIYSVKK 561 (603)
T ss_pred cceeeeeeeeEEEEEeCCCceEEEecccc-----ceEEEEEccC
Confidence 1111 12222221112277888888765 4577787654
No 174
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=48.58 E-value=3.1e+02 Score=27.92 Aligned_cols=139 Identities=15% Similarity=0.143 Sum_probs=69.1
Q ss_pred cceEEEEeCCCCeEEEcccccCcccceEEEEECCEEEEEeccCCCCCCCeeEEEeCCCCeEEEeccCCCCCceeEEEEE-
Q 007704 419 FSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL- 497 (592)
Q Consensus 419 ~~~v~~yD~~t~~W~~i~~~p~~R~~~~a~~~~g~IYV~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~~s~v~~- 497 (592)
..+|-++|..|++=.+.-.++.+....- ...+|.|..+. +-.++--+|+.+-.--+--.||.... ++.+
T Consensus 164 d~tVRLWD~rTgt~v~sL~~~s~VtSlE-vs~dG~ilTia------~gssV~Fwdaksf~~lKs~k~P~nV~---SASL~ 233 (334)
T KOG0278|consen 164 DKTVRLWDHRTGTEVQSLEFNSPVTSLE-VSQDGRILTIA------YGSSVKFWDAKSFGLLKSYKMPCNVE---SASLH 233 (334)
T ss_pred CCceEEEEeccCcEEEEEecCCCCccee-eccCCCEEEEe------cCceeEEeccccccceeeccCccccc---ccccc
Confidence 3567888888876443222222222211 12245554432 11345555555433222233444332 2223
Q ss_pred -CCEEEEEecCCCCCCCCeEEEEeCCCCeEEEcCCCCCCCcceEEEE-ECCEEEEEecccCCCccccEEEEEcCC---Cc
Q 007704 498 -NGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAV-VKEAIYVIGGVKNGSEIVDTVERFKEG---QG 572 (592)
Q Consensus 498 -~~~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~lp~~R~~~s~~v-~~~~Iyv~GG~~~~~~~~~~v~~Yd~~---~~ 572 (592)
+..+||.||.+. -++.||-.++.=...-....+.--|++-. -++.+|..|..++. -.+|.-.+. ..
T Consensus 234 P~k~~fVaGged~-----~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGT----irlWQt~~~~~~~~ 304 (334)
T KOG0278|consen 234 PKKEFFVAGGEDF-----KVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGT----IRLWQTTPGKTYGL 304 (334)
T ss_pred CCCceEEecCcce-----EEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCce----EEEEEecCCCchhh
Confidence 567999999653 36778877764222200111111233322 27899999887654 445665655 45
Q ss_pred EEEc
Q 007704 573 WEEI 576 (592)
Q Consensus 573 W~~v 576 (592)
|..+
T Consensus 305 ~~~~ 308 (334)
T KOG0278|consen 305 WKCV 308 (334)
T ss_pred cccc
Confidence 6655
No 175
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=48.13 E-value=3.4e+02 Score=28.24 Aligned_cols=100 Identities=23% Similarity=0.296 Sum_probs=51.0
Q ss_pred CCEEEEEecCCCCcccceEEEEeCCCCeEE---Ecc-cccCcccceEEEE-ECCEEEEEeccCCCCCCCeeEEEeCCCCe
Q 007704 404 DNKIFAIGGGNGLECFSDVEMLDLDIGKWI---RTR-SMLQKRFALAAAE-LNGVLYATGGYDGNEYMNSAERFDPREHY 478 (592)
Q Consensus 404 ~~~Iyv~GG~~~~~~~~~v~~yD~~t~~W~---~i~-~~p~~R~~~~a~~-~~g~IYV~GG~~~~~~~~~v~~yD~~t~~ 478 (592)
.++.+..||.+ |.+-+|++.+..=. ++. .++.-....+++. +++.-++.|.-+ .++..+|.+++.
T Consensus 108 Sg~~VAcGGLd-----N~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD-----~TCalWDie~g~ 177 (343)
T KOG0286|consen 108 SGNFVACGGLD-----NKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGD-----MTCALWDIETGQ 177 (343)
T ss_pred CCCeEEecCcC-----ceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCC-----ceEEEEEcccce
Confidence 68888899866 46678888755322 121 1222222222332 343333433222 456778888775
Q ss_pred EEEeccCCCCCceeEEEE----E---CCEEEEEecCCCCCCCCeEEEEeCCCC
Q 007704 479 WTKIANMNRRRGCHSLAV----L---NGKLYALGGFDGSAMVPSIEVYDPRLG 524 (592)
Q Consensus 479 W~~i~~~p~~R~~~s~v~----~---~~~Lyv~GG~~~~~~~~~v~~yD~~t~ 524 (592)
-...= .+|+.-+ + ++..||.||.+.. ...+|.+..
T Consensus 178 ~~~~f------~GH~gDV~slsl~p~~~ntFvSg~cD~~-----aklWD~R~~ 219 (343)
T KOG0286|consen 178 QTQVF------HGHTGDVMSLSLSPSDGNTFVSGGCDKS-----AKLWDVRSG 219 (343)
T ss_pred EEEEe------cCCcccEEEEecCCCCCCeEEecccccc-----eeeeeccCc
Confidence 44321 1222111 1 6778999987643 334555444
No 176
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=47.64 E-value=4.4e+02 Score=29.32 Aligned_cols=154 Identities=16% Similarity=0.151 Sum_probs=80.3
Q ss_pred EEECCEEEEEeeCCCCCCcceEEEEECCCCeEEECCCCCCCCcceEEEEECCEEEEEecCCCCcccceEEEEeCCCCeEE
Q 007704 354 AMLNGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIGKWI 433 (592)
Q Consensus 354 v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~lp~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~v~~yD~~t~~W~ 433 (592)
+.++++||.+.-.+| ..+++.-|...+..++...... +...-+..+|+=+||- .-.++|.|||.|.+-+
T Consensus 232 mIV~~RvYFlsD~eG---~GnlYSvdldGkDlrrHTnFtd--YY~R~~nsDGkrIvFq------~~GdIylydP~td~le 300 (668)
T COG4946 232 MIVGERVYFLSDHEG---VGNLYSVDLDGKDLRRHTNFTD--YYPRNANSDGKRIVFQ------NAGDIYLYDPETDSLE 300 (668)
T ss_pred eEEcceEEEEecccC---ccceEEeccCCchhhhcCCchh--ccccccCCCCcEEEEe------cCCcEEEeCCCcCcce
Confidence 456888888876554 2356777776655544433321 1122233466655552 1248999999999888
Q ss_pred Ecc-cccCccc------------ceEEEEECCEEEEEeccCCCCCCCeeEEEeCCCCeEEEeccCCCCCceeEEEEECCE
Q 007704 434 RTR-SMLQKRF------------ALAAAELNGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVLNGK 500 (592)
Q Consensus 434 ~i~-~~p~~R~------------~~~a~~~~g~IYV~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~~s~v~~~~~ 500 (592)
++. .+|..|. .---++++|.++++-.. ..+.++++-.+--.+++....-|+.+ ...++.
T Consensus 301 kldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR------GkaFi~~~~~~~~iqv~~~~~VrY~r--~~~~~e 372 (668)
T COG4946 301 KLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR------GKAFIMRPWDGYSIQVGKKGGVRYRR--IQVDPE 372 (668)
T ss_pred eeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec------CcEEEECCCCCeeEEcCCCCceEEEE--EccCCc
Confidence 764 2333321 11122334443333211 23455554444333443332333322 223444
Q ss_pred EEEEecCCCCCCCCeEEEEeCCCCeEEEcC
Q 007704 501 LYALGGFDGSAMVPSIEVYDPRLGSWMSGE 530 (592)
Q Consensus 501 Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~ 530 (592)
-.++|-.++ ..+.+||..+..-+.+.
T Consensus 373 ~~vigt~dg----D~l~iyd~~~~e~kr~e 398 (668)
T COG4946 373 GDVIGTNDG----DKLGIYDKDGGEVKRIE 398 (668)
T ss_pred ceEEeccCC----ceEEEEecCCceEEEee
Confidence 677777665 35788888887766553
No 177
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=47.16 E-value=4.8e+02 Score=29.64 Aligned_cols=166 Identities=17% Similarity=0.263 Sum_probs=85.7
Q ss_pred ceEEEEECCCCeEEECCCCCCCCcceEEEEECCEEEEEecCCCCcccceEEEEeCCCCeEEEcccccCcccc-eEEEEEC
Q 007704 373 NTVESYSPANDEWTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFA-LAAAELN 451 (592)
Q Consensus 373 ~~v~~yd~~t~~W~~l~~lp~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~-~~a~~~~ 451 (592)
+.|.++|..+..-..+- ...-..-.++.+++.+.|.|..++ .+-+||+.+.+.- ..+.. ..+ -....++
T Consensus 311 ~tVkVW~v~n~~~l~l~--~~h~~~V~~v~~~~~~lvsgs~d~-----~v~VW~~~~~~cl--~sl~g-H~~~V~sl~~~ 380 (537)
T KOG0274|consen 311 NTVKVWDVTNGACLNLL--RGHTGPVNCVQLDEPLLVSGSYDG-----TVKVWDPRTGKCL--KSLSG-HTGRVYSLIVD 380 (537)
T ss_pred ceEEEEeccCcceEEEe--ccccccEEEEEecCCEEEEEecCc-----eEEEEEhhhceee--eeecC-CcceEEEEEec
Confidence 56777777755443321 111112234455777878876543 6778888755432 22211 111 1111345
Q ss_pred C-EEEEEeccCCCCCCCeeEEEeCCCCeEEEeccCCCCCceeEEE----EECCEEEEEecCCCCCCCCeEEEEeCCCCeE
Q 007704 452 G-VLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLA----VLNGKLYALGGFDGSAMVPSIEVYDPRLGSW 526 (592)
Q Consensus 452 g-~IYV~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~~s~v----~~~~~Lyv~GG~~~~~~~~~v~~yD~~t~~W 526 (592)
+ ..++-|+.+ ..+-++|+.+.. ..+ ..-.+|..+ .+.+.+++-+..++ .|.++|..++.-
T Consensus 381 ~~~~~~Sgs~D-----~~IkvWdl~~~~-~c~----~tl~~h~~~v~~l~~~~~~Lvs~~aD~-----~Ik~WD~~~~~~ 445 (537)
T KOG0274|consen 381 SENRLLSGSLD-----TTIKVWDLRTKR-KCI----HTLQGHTSLVSSLLLRDNFLVSSSADG-----TIKLWDAEEGEC 445 (537)
T ss_pred CcceEEeeeec-----cceEeecCCchh-hhh----hhhcCCcccccccccccceeEeccccc-----cEEEeecccCce
Confidence 5 555666655 457778877764 111 122223333 33567777777654 577788877766
Q ss_pred EEcCCCCCCCcceEEEEECCEEEEEecccCCCccccEEEEEcCC
Q 007704 527 MSGEPMKLSRGYLGAAVVKEAIYVIGGVKNGSEIVDTVERFKEG 570 (592)
Q Consensus 527 ~~v~~lp~~R~~~s~~v~~~~Iyv~GG~~~~~~~~~~v~~Yd~~ 570 (592)
.+.-.-+ .....++.......++..+.++ .+..||..
T Consensus 446 ~~~~~~~-~~~~v~~l~~~~~~il~s~~~~------~~~l~dl~ 482 (537)
T KOG0274|consen 446 LRTLEGR-HVGGVSALALGKEEILCSSDDG------SVKLWDLR 482 (537)
T ss_pred eeeeccC-CcccEEEeecCcceEEEEecCC------eeEEEecc
Confidence 5543222 2233333334446666676654 36666643
No 178
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=46.20 E-value=4.4e+02 Score=28.98 Aligned_cols=106 Identities=20% Similarity=0.263 Sum_probs=59.7
Q ss_pred CCEEEEEecCCCCcccceEEEEeCCCC-eE-EEcccccCcccceEEEEECCEEEEEeccCCCCCCCeeEEEeCCCCeEEE
Q 007704 404 DNKIFAIGGGNGLECFSDVEMLDLDIG-KW-IRTRSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHYWTK 481 (592)
Q Consensus 404 ~~~Iyv~GG~~~~~~~~~v~~yD~~t~-~W-~~i~~~p~~R~~~~a~~~~g~IYV~GG~~~~~~~~~v~~yD~~t~~W~~ 481 (592)
++++.+-|+.+ ..+.++|...+ .- +.+.......+..+. .-.+.+++.|+.+ .++.++|.++.+-..
T Consensus 214 d~~~l~s~s~D-----~tiriwd~~~~~~~~~~l~gH~~~v~~~~f-~p~g~~i~Sgs~D-----~tvriWd~~~~~~~~ 282 (456)
T KOG0266|consen 214 DGSYLLSGSDD-----KTLRIWDLKDDGRNLKTLKGHSTYVTSVAF-SPDGNLLVSGSDD-----GTVRIWDVRTGECVR 282 (456)
T ss_pred CCcEEEEecCC-----ceEEEeeccCCCeEEEEecCCCCceEEEEe-cCCCCEEEEecCC-----CcEEEEeccCCeEEE
Confidence 56644444333 46788888433 22 223333333322222 2245889999877 468889988854433
Q ss_pred eccCCCCCceeEEEEE--CCEEEEEecCCCCCCCCeEEEEeCCCCeEE
Q 007704 482 IANMNRRRGCHSLAVL--NGKLYALGGFDGSAMVPSIEVYDPRLGSWM 527 (592)
Q Consensus 482 i~~~p~~R~~~s~v~~--~~~Lyv~GG~~~~~~~~~v~~yD~~t~~W~ 527 (592)
.-..-.. .-+.+.+ ++.+++.+.+++ .+.+||..+..-.
T Consensus 283 ~l~~hs~--~is~~~f~~d~~~l~s~s~d~-----~i~vwd~~~~~~~ 323 (456)
T KOG0266|consen 283 KLKGHSD--GISGLAFSPDGNLLVSASYDG-----TIRVWDLETGSKL 323 (456)
T ss_pred eeeccCC--ceEEEEECCCCCEEEEcCCCc-----cEEEEECCCCcee
Confidence 2211222 2233333 778888876653 5889999888743
No 179
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=46.18 E-value=4.4e+02 Score=28.97 Aligned_cols=131 Identities=15% Similarity=0.266 Sum_probs=64.4
Q ss_pred EEECCEEEEEeeCCCCCCcceEEEEECCCCeEEECCCCCCCCcceEEEEE---CCEEEEEecCCCCcccceEEEEeCCCC
Q 007704 354 AMLNGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATI---DNKIFAIGGGNGLECFSDVEMLDLDIG 430 (592)
Q Consensus 354 v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~lp~~r~~~~~~~~---~~~Iyv~GG~~~~~~~~~v~~yD~~t~ 430 (592)
+..+++.+++||.+ .-+.++|+.+.+=.. .++..|..-....+ -+.+|..+- ...+-+|+....
T Consensus 210 vS~Dgkylatgg~d-----~~v~Iw~~~t~ehv~--~~~ghr~~V~~L~fr~gt~~lys~s~------Drsvkvw~~~~~ 276 (479)
T KOG0299|consen 210 VSSDGKYLATGGRD-----RHVQIWDCDTLEHVK--VFKGHRGAVSSLAFRKGTSELYSASA------DRSVKVWSIDQL 276 (479)
T ss_pred EcCCCcEEEecCCC-----ceEEEecCcccchhh--cccccccceeeeeeecCccceeeeec------CCceEEEehhHh
Confidence 33499999999977 345567766543222 23333322222222 234655531 123334444322
Q ss_pred eEEEcccccCcccceEEEEE------CCEEEEEeccCCCCCCCeeEEEeCCCCeEEEeccCCCCCceeEEEEECCEEEEE
Q 007704 431 KWIRTRSMLQKRFALAAAEL------NGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVLNGKLYAL 504 (592)
Q Consensus 431 ~W~~i~~~p~~R~~~~a~~~------~g~IYV~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~~s~v~~~~~Lyv~ 504 (592)
.. ...-++|...+. ..+...+||.+. ++-+|+....+=... -+..-+.-+++.+++.=|+.
T Consensus 277 s~------vetlyGHqd~v~~IdaL~reR~vtVGgrDr-----T~rlwKi~eesqlif--rg~~~sidcv~~In~~Hfvs 343 (479)
T KOG0299|consen 277 SY------VETLYGHQDGVLGIDALSRERCVTVGGRDR-----TVRLWKIPEESQLIF--RGGEGSIDCVAFINDEHFVS 343 (479)
T ss_pred HH------HHHHhCCccceeeechhcccceEEeccccc-----eeEEEeccccceeee--eCCCCCeeeEEEecccceee
Confidence 21 122345544433 467778888763 344444422211110 11223344566778888999
Q ss_pred ecCCCC
Q 007704 505 GGFDGS 510 (592)
Q Consensus 505 GG~~~~ 510 (592)
|+-++.
T Consensus 344 GSdnG~ 349 (479)
T KOG0299|consen 344 GSDNGS 349 (479)
T ss_pred ccCCce
Confidence 886654
No 180
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=45.70 E-value=3.7e+02 Score=29.96 Aligned_cols=31 Identities=23% Similarity=0.335 Sum_probs=22.1
Q ss_pred cceEEEEECCEEEEEeccCCCCCCCeeEEEeCCCCe
Q 007704 443 FALAAAELNGVLYATGGYDGNEYMNSAERFDPREHY 478 (592)
Q Consensus 443 ~~~~a~~~~g~IYV~GG~~~~~~~~~v~~yD~~t~~ 478 (592)
.+-+.+..+..|+|.-|++ ..++.||.....
T Consensus 212 ~gicfspsne~l~vsVG~D-----kki~~yD~~s~~ 242 (673)
T KOG4378|consen 212 RGICFSPSNEALLVSVGYD-----KKINIYDIRSQA 242 (673)
T ss_pred CcceecCCccceEEEeccc-----ceEEEeeccccc
Confidence 3444556688888888877 568889987544
No 181
>PHA02681 ORF089 virion membrane protein; Provisional
Probab=43.97 E-value=28 Score=28.76 Aligned_cols=27 Identities=19% Similarity=0.152 Sum_probs=23.2
Q ss_pred CCCCCCCCCHHHHHHHHHhhccCCCCC
Q 007704 127 PHHFWFELDHSQASKLIALLSSMAIAP 153 (592)
Q Consensus 127 ~~~f~~~l~~~q~~~l~~lf~~~~~~~ 153 (592)
..-|+-+||.+||+.|-.||.+.+-..
T Consensus 45 ds~F~D~lTpDQVrAlHRlvTsSpe~d 71 (92)
T PHA02681 45 ASSFEDKMTDDQVRAFHALVTSSPEDD 71 (92)
T ss_pred CchhhccCCHHHHHHHHHHHhCCCCCC
Confidence 457889999999999999999887554
No 182
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=43.63 E-value=2.3e+02 Score=28.85 Aligned_cols=123 Identities=21% Similarity=0.222 Sum_probs=62.6
Q ss_pred ceEEEEECCCCeEEECCCCCCCCcceEEEEECCEEEEEecCCCCcccceEEEEeCCCCeEEEcccccCcccceEEEEECC
Q 007704 373 NTVESYSPANDEWTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNG 452 (592)
Q Consensus 373 ~~v~~yd~~t~~W~~l~~lp~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~~~a~~~~g 452 (592)
.+|-.+|.++++-.+--.++.+..+. =+..+|+|+.+.- -+.+-.+|+.+-.--+--.||..-...+. .-+.
T Consensus 165 ~tVRLWD~rTgt~v~sL~~~s~VtSl-Evs~dG~ilTia~------gssV~Fwdaksf~~lKs~k~P~nV~SASL-~P~k 236 (334)
T KOG0278|consen 165 KTVRLWDHRTGTEVQSLEFNSPVTSL-EVSQDGRILTIAY------GSSVKFWDAKSFGLLKSYKMPCNVESASL-HPKK 236 (334)
T ss_pred CceEEEEeccCcEEEEEecCCCCcce-eeccCCCEEEEec------CceeEEeccccccceeeccCccccccccc-cCCC
Confidence 46778888887765432333333221 1233666655531 13455555554322222344443222111 1255
Q ss_pred EEEEEeccCCCCCCCeeEEEeCCCCeEEEeccCCCCCceeEE-EEE--CCEEEEEecCCCC
Q 007704 453 VLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSL-AVL--NGKLYALGGFDGS 510 (592)
Q Consensus 453 ~IYV~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~~s~-v~~--~~~Lyv~GG~~~~ 510 (592)
.+||.||-+. .+++||-.++. .+..-.....+..- +.+ +|.+|..|-.++.
T Consensus 237 ~~fVaGged~-----~~~kfDy~Tge--Ei~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGT 290 (334)
T KOG0278|consen 237 EFFVAGGEDF-----KVYKFDYNTGE--EIGSYNKGHFGPVHCVRFSPDGELYASGSEDGT 290 (334)
T ss_pred ceEEecCcce-----EEEEEeccCCc--eeeecccCCCCceEEEEECCCCceeeccCCCce
Confidence 7999999552 45677777663 33322222222222 223 8999999987764
No 183
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=42.75 E-value=2.6e+02 Score=29.12 Aligned_cols=135 Identities=12% Similarity=0.132 Sum_probs=64.6
Q ss_pred CCEEEEEeeCCCCCCcceEEEEECCCCeEEECCCCCCC-CcceEEEEECCEEEEEecCCCCcccceEEEEeCCCCeEEEc
Q 007704 357 NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGT-KGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRT 435 (592)
Q Consensus 357 ~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~lp~~-r~~~~~~~~~~~Iyv~GG~~~~~~~~~v~~yD~~t~~W~~i 435 (592)
++.....||.+ +.+-.||+.+++-..++.-..| |..|-+-..+-.+++.|.++ +++-.+|+.... ++
T Consensus 83 dgskVf~g~~D-----k~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWD-----KTlKfWD~R~~~--pv 150 (347)
T KOG0647|consen 83 DGSKVFSGGCD-----KQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWD-----KTLKFWDTRSSN--PV 150 (347)
T ss_pred CCceEEeeccC-----CceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccc-----cceeecccCCCC--ee
Confidence 44455556665 4678899999988777544333 22222222233466666554 344455554322 23
Q ss_pred ccccCcccceEEEEECCEEEEEeccCCCCCCCeeEEEeCCCCeE--EEeccCCCCCceeEEEEECCEEEEEecCCC
Q 007704 436 RSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHYW--TKIANMNRRRGCHSLAVLNGKLYALGGFDG 509 (592)
Q Consensus 436 ~~~p~~R~~~~a~~~~g~IYV~GG~~~~~~~~~v~~yD~~t~~W--~~i~~~p~~R~~~s~v~~~~~Lyv~GG~~~ 509 (592)
..+..|-..+++-+...-+.|.-+ -+.+.+|+++...= .++.+...--..+-++..+...|.+|+..|
T Consensus 151 ~t~~LPeRvYa~Dv~~pm~vVata------~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEG 220 (347)
T KOG0647|consen 151 ATLQLPERVYAADVLYPMAVVATA------ERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEG 220 (347)
T ss_pred eeeeccceeeehhccCceeEEEec------CCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecc
Confidence 333333333444433333333222 25677888865532 222221111111222333666778887543
No 184
>PHA02902 putative IMV membrane protein; Provisional
Probab=42.53 E-value=26 Score=27.48 Aligned_cols=43 Identities=19% Similarity=0.193 Sum_probs=27.7
Q ss_pred eeecCCCCCcchhHHHhcccCCCCCCCCCCHHHHHHHHHhhccC
Q 007704 106 MQCQPLNEEKFKPIIAANYYTPHHFWFELDHSQASKLIALLSSM 149 (592)
Q Consensus 106 ~~~~pl~e~~~~~~i~~n~~~~~~f~~~l~~~q~~~l~~lf~~~ 149 (592)
.+|-|-|.+.=+. ..+---+..-|+-+||..|+++|-.|+.+.
T Consensus 27 ~kci~sP~~~d~~-~~~~l~~d~~F~D~lTpDQirAlHrlvT~S 69 (70)
T PHA02902 27 YKCIPSPDDRDER-FGDTLEDDPLFKDSLTPDQIKALHRLVSLS 69 (70)
T ss_pred hcCCCCCCCcccc-ccccCCCCchhhccCCHHHHHHHHHHHhcc
Confidence 3466655432222 222112346789999999999999998763
No 185
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=42.40 E-value=1.5e+02 Score=31.53 Aligned_cols=201 Identities=15% Similarity=0.153 Sum_probs=91.8
Q ss_pred CCEEEEEeeCC----CCCCcceEEEEECCCCeEEECCCCCC-CCcc------eEEEEECC-EEEEEecCCCCcccceEEE
Q 007704 357 NGELYIFGGGD----GNSWHNTVESYSPANDEWTSRPSLNG-TKGS------LAGATIDN-KIFAIGGGNGLECFSDVEM 424 (592)
Q Consensus 357 ~~~Iyv~GG~~----~~~~~~~v~~yd~~t~~W~~l~~lp~-~r~~------~~~~~~~~-~Iyv~GG~~~~~~~~~v~~ 424 (592)
+..+|+..-+- -+...+-+..||..|-+-..--.+|. +|.. ....+-++ .+||+ +..+..+|-+
T Consensus 47 gk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~----N~TPa~SVtV 122 (342)
T PF06433_consen 47 GKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQ----NFTPATSVTV 122 (342)
T ss_dssp SSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEE----EESSSEEEEE
T ss_pred CCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEE----ccCCCCeEEE
Confidence 45677766521 13445678899999985432111222 2332 22333344 46665 3346678999
Q ss_pred EeCCCCeEEEcccc-------cCcccceEEEEECCEEEEEe-ccCCCCCCCeeEEEeCCCCeEEEeccCCCCCceeEEEE
Q 007704 425 LDLDIGKWIRTRSM-------LQKRFALAAAELNGVLYATG-GYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAV 496 (592)
Q Consensus 425 yD~~t~~W~~i~~~-------p~~R~~~~a~~~~g~IYV~G-G~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~~s~v~ 496 (592)
.|...++....-+. |.+-.++++.+-+|.+..+. +.+++.....-.+||+..+-.-.-+.........-.+.
T Consensus 123 VDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~S 202 (342)
T PF06433_consen 123 VDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVS 202 (342)
T ss_dssp EETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEB
T ss_pred EECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEe
Confidence 99999987532121 22222344433455544433 22333222223466666543221121111111223355
Q ss_pred ECCEEEEEecCCCCCCCCeEEEEeCC-----CCeEEEcCCCCCCCcceEEEEE--CCEEEEEe---cccCCCccccEEEE
Q 007704 497 LNGKLYALGGFDGSAMVPSIEVYDPR-----LGSWMSGEPMKLSRGYLGAAVV--KEAIYVIG---GVKNGSEIVDTVER 566 (592)
Q Consensus 497 ~~~~Lyv~GG~~~~~~~~~v~~yD~~-----t~~W~~v~~lp~~R~~~s~~v~--~~~Iyv~G---G~~~~~~~~~~v~~ 566 (592)
++|.||-+.=.... ..-...+... ...|+.-+ +..++.. .++|||.- +..........||+
T Consensus 203 y~G~v~~~dlsg~~--~~~~~~~~~~t~~e~~~~WrPGG-------~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv 273 (342)
T PF06433_consen 203 YEGNVYSADLSGDS--AKFGKPWSLLTDAEKADGWRPGG-------WQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWV 273 (342)
T ss_dssp TTSEEEEEEETTSS--EEEEEEEESS-HHHHHTTEEE-S-------SS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEE
T ss_pred cCCEEEEEeccCCc--ccccCcccccCccccccCcCCcc-------eeeeeeccccCeEEEEecCCCCCCccCCceEEEE
Confidence 67888874321111 0111222221 13465432 2233333 57888763 22222236788999
Q ss_pred EcCC
Q 007704 567 FKEG 570 (592)
Q Consensus 567 Yd~~ 570 (592)
||++
T Consensus 274 ~D~~ 277 (342)
T PF06433_consen 274 YDLK 277 (342)
T ss_dssp EETT
T ss_pred EECC
Confidence 9987
No 186
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=41.46 E-value=4.4e+02 Score=27.57 Aligned_cols=176 Identities=17% Similarity=0.131 Sum_probs=85.4
Q ss_pred ceEEEEECCCCeEEECCCCCCCCcceEEEEECCEEEEEecCCCCcccceEEEEeCCCCeE-EEcc----cccCcccceEE
Q 007704 373 NTVESYSPANDEWTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIGKW-IRTR----SMLQKRFALAA 447 (592)
Q Consensus 373 ~~v~~yd~~t~~W~~l~~lp~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~v~~yD~~t~~W-~~i~----~~p~~R~~~~a 447 (592)
+.+++||+.++.=+... +|....+....--++.|++.. ..+..++++++.- +.+. ..+..|.+=..
T Consensus 47 ~~i~r~~~~~g~~~~~~-~p~~~~~~~~~d~~g~Lv~~~--------~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~ 117 (307)
T COG3386 47 GRIHRLDPETGKKRVFP-SPGGFSSGALIDAGGRLIACE--------HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGV 117 (307)
T ss_pred CeEEEecCCcCceEEEE-CCCCcccceeecCCCeEEEEc--------cccEEEeccCCceeEEeccccCCCCcCCCCcee
Confidence 45777887755433331 122222222222345555553 3456677654433 5443 33445666555
Q ss_pred EEECCEEEEEecc------CCCCCCCeeEEEeCCCCeEEEeccCCCCCceeEEEEE-CC-EEEEEecCCCCCCCCeEEEE
Q 007704 448 AELNGVLYATGGY------DGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL-NG-KLYALGGFDGSAMVPSIEVY 519 (592)
Q Consensus 448 ~~~~g~IYV~GG~------~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~~s~v~~-~~-~Lyv~GG~~~~~~~~~v~~y 519 (592)
+--+|.+|+-.-. ......-.+|++||. +...++..-..... -+++.- ++ .+|+.- ...+.+++|
T Consensus 118 v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~-g~~~~l~~~~~~~~-NGla~SpDg~tly~aD-----T~~~~i~r~ 190 (307)
T COG3386 118 VDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD-GGVVRLLDDDLTIP-NGLAFSPDGKTLYVAD-----TPANRIHRY 190 (307)
T ss_pred EcCCCCEEEeCCCccccCccccCCcceEEEEcCC-CCEEEeecCcEEec-CceEECCCCCEEEEEe-----CCCCeEEEE
Confidence 5567777775432 222334579999994 55554422111110 112221 33 566652 234567777
Q ss_pred eCCC--------CeEEEcCCCCCCCcceEEEEECCEEEEEecccCCCccccEEEEEcCC
Q 007704 520 DPRL--------GSWMSGEPMKLSRGYLGAAVVKEAIYVIGGVKNGSEIVDTVERFKEG 570 (592)
Q Consensus 520 D~~t--------~~W~~v~~lp~~R~~~s~~v~~~~Iyv~GG~~~~~~~~~~v~~Yd~~ 570 (592)
+... +.+.... ...++--..++--++.+|+.+...+ ..|.+|+|+
T Consensus 191 ~~d~~~g~~~~~~~~~~~~-~~~G~PDG~~vDadG~lw~~a~~~g-----~~v~~~~pd 243 (307)
T COG3386 191 DLDPATGPIGGRRGFVDFD-EEPGLPDGMAVDADGNLWVAAVWGG-----GRVVRFNPD 243 (307)
T ss_pred ecCcccCccCCcceEEEcc-CCCCCCCceEEeCCCCEEEecccCC-----ceEEEECCC
Confidence 6653 1111111 1122222344445788887444322 469999996
No 187
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.25 E-value=4e+02 Score=27.09 Aligned_cols=102 Identities=19% Similarity=0.277 Sum_probs=55.7
Q ss_pred EEEEEecCCCCcccceEEEEeCCCCeEEEc----------------ccccCcccceEEEEECCEEEEEeccCCCCCCCee
Q 007704 406 KIFAIGGGNGLECFSDVEMLDLDIGKWIRT----------------RSMLQKRFALAAAELNGVLYATGGYDGNEYMNSA 469 (592)
Q Consensus 406 ~Iyv~GG~~~~~~~~~v~~yD~~t~~W~~i----------------~~~p~~R~~~~a~~~~g~IYV~GG~~~~~~~~~v 469 (592)
+=++-||++.. -.+|.|| .++|..- |....+++..+.+.-+++++|+-
T Consensus 176 krlvSgGcDn~---VkiW~~~--~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt----------- 239 (299)
T KOG1332|consen 176 KRLVSGGCDNL---VKIWKFD--SDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWT----------- 239 (299)
T ss_pred ceeeccCCccc---eeeeecC--CcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEE-----------
Confidence 44777876632 2445554 4477421 34456777777777788877753
Q ss_pred EEEeCCCCeEEEe--ccCCCCCceeEEEEECCEEEEEecCCCCCCCCeEEEEeCCC-CeEEEcCC
Q 007704 470 ERFDPREHYWTKI--ANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRL-GSWMSGEP 531 (592)
Q Consensus 470 ~~yD~~t~~W~~i--~~~p~~R~~~s~v~~~~~Lyv~GG~~~~~~~~~v~~yD~~t-~~W~~v~~ 531 (592)
-+-+...|+.. .+.|.+... ..-.+-|.++.++|-+ +.+.++-... ++|.+++.
T Consensus 240 --~~~e~e~wk~tll~~f~~~~w~-vSWS~sGn~LaVs~Gd-----Nkvtlwke~~~Gkw~~v~~ 296 (299)
T KOG1332|consen 240 --KDEEYEPWKKTLLEEFPDVVWR-VSWSLSGNILAVSGGD-----NKVTLWKENVDGKWEEVGE 296 (299)
T ss_pred --ecCccCcccccccccCCcceEE-EEEeccccEEEEecCC-----cEEEEEEeCCCCcEEEccc
Confidence 23344567543 333433332 2333444455544422 4566666654 48998864
No 188
>PF14298 DUF4374: Domain of unknown function (DUF4374)
Probab=40.71 E-value=4.8e+02 Score=28.73 Aligned_cols=62 Identities=15% Similarity=0.104 Sum_probs=39.6
Q ss_pred ccceEEEEeCCCCeEEEcccccCc---ccceEEEEECCEEEEEeccCCCCCCCeeEEEeCCCCeEE
Q 007704 418 CFSDVEMLDLDIGKWIRTRSMLQK---RFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHYWT 480 (592)
Q Consensus 418 ~~~~v~~yD~~t~~W~~i~~~p~~---R~~~~a~~~~g~IYV~GG~~~~~~~~~v~~yD~~t~~W~ 480 (592)
..+.+.+||..+.+.+.+..+|.. ...-+..+-+|++|+-=... .....-+|.+||.+.+=+
T Consensus 365 ~~~~laI~d~~~kt~t~V~glP~~~is~~~~~~~ve~G~aYi~Vtt~-~g~~~~IY~iDp~TatAt 429 (435)
T PF14298_consen 365 DAKKLAIFDVSNKTFTWVTGLPADLISGFGNAPYVENGKAYIPVTTE-DGSDPYIYKIDPATATAT 429 (435)
T ss_pred ccceEEEEEccCceeEEeccCChhhccccccceEeeCCEEEEEEeec-CCCceeEEEEcCcccccc
Confidence 456788999999888877766654 33333445577777743211 121357899999887543
No 189
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=39.53 E-value=5.5e+02 Score=28.16 Aligned_cols=172 Identities=18% Similarity=0.157 Sum_probs=80.0
Q ss_pred EEEEEeeCCCCCCcceEEEEECCCCeEEECCCCCC-CCcceEEEE--ECCEEEEEecCCCCcccceEEEEeCC-----CC
Q 007704 359 ELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNG-TKGSLAGAT--IDNKIFAIGGGNGLECFSDVEMLDLD-----IG 430 (592)
Q Consensus 359 ~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~lp~-~r~~~~~~~--~~~~Iyv~GG~~~~~~~~~v~~yD~~-----t~ 430 (592)
.|+.-||.+ ++|-.+|..+.+-... ++. ..--.++.. ....+.+-|++++ .|-++|.. ..
T Consensus 257 nVLaSgsaD-----~TV~lWD~~~g~p~~s--~~~~~k~Vq~l~wh~~~p~~LLsGs~D~-----~V~l~D~R~~~~s~~ 324 (463)
T KOG0270|consen 257 NVLASGSAD-----KTVKLWDVDTGKPKSS--ITHHGKKVQTLEWHPYEPSVLLSGSYDG-----TVALKDCRDPSNSGK 324 (463)
T ss_pred eeEEecCCC-----ceEEEEEcCCCCccee--hhhcCCceeEEEecCCCceEEEeccccc-----eEEeeeccCccccCc
Confidence 455556544 5677888887765443 221 111112222 2445677776654 34444443 34
Q ss_pred eEEEcccccCcccceEEEEECCEEEEEeccCCCCCCCeeEEEeCCCC---eEEEeccCCCCCceeEEEEECCEEEEEecC
Q 007704 431 KWIRTRSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREH---YWTKIANMNRRRGCHSLAVLNGKLYALGGF 507 (592)
Q Consensus 431 ~W~~i~~~p~~R~~~~a~~~~g~IYV~GG~~~~~~~~~v~~yD~~t~---~W~~i~~~p~~R~~~s~v~~~~~Lyv~GG~ 507 (592)
.|+.-+..-.- +.-...-..+++| .+. ..++.||.+.. .|+..+.-. +.++-+.-...-.+.+.+|.
T Consensus 325 ~wk~~g~VEkv----~w~~~se~~f~~~-tdd----G~v~~~D~R~~~~~vwt~~AHd~-~ISgl~~n~~~p~~l~t~s~ 394 (463)
T KOG0270|consen 325 EWKFDGEVEKV----AWDPHSENSFFVS-TDD----GTVYYFDIRNPGKPVWTLKAHDD-EISGLSVNIQTPGLLSTAST 394 (463)
T ss_pred eEEeccceEEE----EecCCCceeEEEe-cCC----ceEEeeecCCCCCceeEEEeccC-CcceEEecCCCCcceeeccc
Confidence 56543322110 0000112233333 111 23566776654 466543211 22222222223335555554
Q ss_pred CCCCCCCeEEEEeCCCCeEEEcCCCCCCCcceEEE--EECCEEEEEecccC
Q 007704 508 DGSAMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAA--VVKEAIYVIGGVKN 556 (592)
Q Consensus 508 ~~~~~~~~v~~yD~~t~~W~~v~~lp~~R~~~s~~--v~~~~Iyv~GG~~~ 556 (592)
++ .-.+|.++....+-.....+...| .++++ .-....|++||...
T Consensus 395 d~---~Vklw~~~~~~~~~v~~~~~~~~r-l~c~~~~~~~a~~la~GG~k~ 441 (463)
T KOG0270|consen 395 DK---VVKLWKFDVDSPKSVKEHSFKLGR-LHCFALDPDVAFTLAFGGEKA 441 (463)
T ss_pred cc---eEEEEeecCCCCcccccccccccc-eeecccCCCcceEEEecCccc
Confidence 32 234666766665555555666677 23332 22457999999864
No 190
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=38.48 E-value=4.2e+02 Score=27.64 Aligned_cols=61 Identities=18% Similarity=0.215 Sum_probs=34.9
Q ss_pred CCEEEEEecCCCCcccceEEE-EeCCCCeEEEcccccCcccceEEEEE------CCEEEEEeccCCCCCCCeeEEEeCCC
Q 007704 404 DNKIFAIGGGNGLECFSDVEM-LDLDIGKWIRTRSMLQKRFALAAAEL------NGVLYATGGYDGNEYMNSAERFDPRE 476 (592)
Q Consensus 404 ~~~Iyv~GG~~~~~~~~~v~~-yD~~t~~W~~i~~~p~~R~~~~a~~~------~g~IYV~GG~~~~~~~~~v~~yD~~t 476 (592)
+|..++-||.+..- -+|. |.-..+.|..- +|..++. ++...+--|.+ ..+..||.++
T Consensus 58 ~gs~~aSgG~Dr~I---~LWnv~gdceN~~~lk--------gHsgAVM~l~~~~d~s~i~S~gtD-----k~v~~wD~~t 121 (338)
T KOG0265|consen 58 DGSCFASGGSDRAI---VLWNVYGDCENFWVLK--------GHSGAVMELHGMRDGSHILSCGTD-----KTVRGWDAET 121 (338)
T ss_pred CCCeEeecCCcceE---EEEeccccccceeeec--------cccceeEeeeeccCCCEEEEecCC-----ceEEEEeccc
Confidence 77888888866321 1222 44455667543 5555543 33344444433 5688899988
Q ss_pred CeEE
Q 007704 477 HYWT 480 (592)
Q Consensus 477 ~~W~ 480 (592)
++-.
T Consensus 122 G~~~ 125 (338)
T KOG0265|consen 122 GKRI 125 (338)
T ss_pred ceee
Confidence 8654
No 191
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=38.09 E-value=5.5e+02 Score=27.80 Aligned_cols=74 Identities=15% Similarity=0.117 Sum_probs=35.1
Q ss_pred CCEEEEEeeCCCCCCcceEEEEECCCCeEEECCCCCCCCcceEEEEE-CCEEEEE-ecCCCCcccceEEEEeCCCCeEEE
Q 007704 357 NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATI-DNKIFAI-GGGNGLECFSDVEMLDLDIGKWIR 434 (592)
Q Consensus 357 ~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~lp~~r~~~~~~~~-~~~Iyv~-GG~~~~~~~~~v~~yD~~t~~W~~ 434 (592)
+|+-+||+|...+ ...+|..|+.+.+-.++...+..-..-.+++- +..+|.+ .+ ..++..|+.|.+=+.
T Consensus 46 dG~kllF~s~~dg--~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~-------~~l~~vdL~T~e~~~ 116 (386)
T PF14583_consen 46 DGRKLLFASDFDG--NRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNG-------RSLRRVDLDTLEERV 116 (386)
T ss_dssp TS-EEEEEE-TTS--S-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETT-------TEEEEEETTT--EEE
T ss_pred CCCEEEEEeccCC--CcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECC-------CeEEEEECCcCcEEE
Confidence 5667777774322 25789999999999999776643222223333 4555444 33 356666666655444
Q ss_pred ccccc
Q 007704 435 TRSML 439 (592)
Q Consensus 435 i~~~p 439 (592)
+-..|
T Consensus 117 vy~~p 121 (386)
T PF14583_consen 117 VYEVP 121 (386)
T ss_dssp EEE--
T ss_pred EEECC
Confidence 43333
No 192
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=37.94 E-value=5.4e+02 Score=27.58 Aligned_cols=142 Identities=20% Similarity=0.294 Sum_probs=75.8
Q ss_pred CCEEEEEeeCCCCCCcceEEEEECCCCeEEECCCCCCCCcceEEE--EECCEEEEEecCCCCcccceEEEEeCCC--CeE
Q 007704 357 NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGA--TIDNKIFAIGGGNGLECFSDVEMLDLDI--GKW 432 (592)
Q Consensus 357 ~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~lp~~r~~~~~~--~~~~~Iyv~GG~~~~~~~~~v~~yD~~t--~~W 432 (592)
++.+.+-||.+ +-.+.++..++.|--. ++...-+-+++ ++++.+.+.|+.++ .+.++...+ .+|
T Consensus 75 ~~~l~aTGGgD-----D~AflW~~~~ge~~~e--ltgHKDSVt~~~FshdgtlLATGdmsG-----~v~v~~~stg~~~~ 142 (399)
T KOG0296|consen 75 NNNLVATGGGD-----DLAFLWDISTGEFAGE--LTGHKDSVTCCSFSHDGTLLATGDMSG-----KVLVFKVSTGGEQW 142 (399)
T ss_pred CCceEEecCCC-----ceEEEEEccCCcceeE--ecCCCCceEEEEEccCceEEEecCCCc-----cEEEEEcccCceEE
Confidence 77888889977 4567888888886332 33333333333 45788888888654 455555544 356
Q ss_pred EEcccccCcccceEEE-EE-CCEEEEEeccCCCCCCCeeEEEeCCCCeEEEeccCCCCCceeEEEEECCEEEEEecCCCC
Q 007704 433 IRTRSMLQKRFALAAA-EL-NGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFDGS 510 (592)
Q Consensus 433 ~~i~~~p~~R~~~~a~-~~-~g~IYV~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~~s~v~~~~~Lyv~GG~~~~ 510 (592)
....++.. ..-. .+ .+.|+++|-.+ ..+|+|...+..-.++=+-+..+..++-..-+|+-.+.|-.+
T Consensus 143 ~~~~e~~d----ieWl~WHp~a~illAG~~D-----GsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~d-- 211 (399)
T KOG0296|consen 143 KLDQEVED----IEWLKWHPRAHILLAGSTD-----GSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDD-- 211 (399)
T ss_pred EeecccCc----eEEEEecccccEEEeecCC-----CcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecC--
Confidence 54322110 0000 11 34566666544 357888877754443322233333222233355555554322
Q ss_pred CCCCeEEEEeCCCC
Q 007704 511 AMVPSIEVYDPRLG 524 (592)
Q Consensus 511 ~~~~~v~~yD~~t~ 524 (592)
.++.++|+.+.
T Consensus 212 ---gti~~Wn~ktg 222 (399)
T KOG0296|consen 212 ---GTIIVWNPKTG 222 (399)
T ss_pred ---ceEEEEecCCC
Confidence 35677777765
No 193
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=37.05 E-value=4.9e+02 Score=26.91 Aligned_cols=177 Identities=16% Similarity=0.118 Sum_probs=81.4
Q ss_pred EEECCEEEEEeeCCCCCCcceEEEEECCCCeEEECCCCCCCCcceEEE-EECCEEEEEecCCCCcccceEEEEeCCCCeE
Q 007704 354 AMLNGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGA-TIDNKIFAIGGGNGLECFSDVEMLDLDIGKW 432 (592)
Q Consensus 354 v~~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~lp~~r~~~~~~-~~~~~Iyv~GG~~~~~~~~~v~~yD~~t~~W 432 (592)
+.-++...+-|++++ .+..+|..+.+=++.=.- ..+--.+++ ..+++-+|-|..+ +++-.||....-=
T Consensus 71 ~s~dg~~alS~swD~-----~lrlWDl~~g~~t~~f~G-H~~dVlsva~s~dn~qivSGSrD-----kTiklwnt~g~ck 139 (315)
T KOG0279|consen 71 LSSDGNFALSASWDG-----TLRLWDLATGESTRRFVG-HTKDVLSVAFSTDNRQIVSGSRD-----KTIKLWNTLGVCK 139 (315)
T ss_pred EccCCceEEeccccc-----eEEEEEecCCcEEEEEEe-cCCceEEEEecCCCceeecCCCc-----ceeeeeeecccEE
Confidence 334777777777763 566777777533221000 011111111 2266666766544 4555566554322
Q ss_pred EEcc-cccCcccceEEEEE--C--CEEEEEeccCCCCCCCeeEEEeCCCCeEEEeccCCCCCceeEEEEECCEEEEEecC
Q 007704 433 IRTR-SMLQKRFALAAAEL--N--GVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGF 507 (592)
Q Consensus 433 ~~i~-~~p~~R~~~~a~~~--~--g~IYV~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~~s~v~~~~~Lyv~GG~ 507 (592)
-.+. .+. |.--..+.+ + +-+++-+|.+ ..+-++|+.+-+-...-.--..--....+.-+|.+.+.||.
T Consensus 140 ~t~~~~~~--~~WVscvrfsP~~~~p~Ivs~s~D-----ktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgk 212 (315)
T KOG0279|consen 140 YTIHEDSH--REWVSCVRFSPNESNPIIVSASWD-----KTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGK 212 (315)
T ss_pred EEEecCCC--cCcEEEEEEcCCCCCcEEEEccCC-----ceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCC
Confidence 1221 111 222222222 2 4456666655 34566776654322111011111112223339999999998
Q ss_pred CCCCCCCeEEEEeCCCCeEEEcCCCCCCCcceEEEEECCEEEEEeccc
Q 007704 508 DGSAMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVVKEAIYVIGGVK 555 (592)
Q Consensus 508 ~~~~~~~~v~~yD~~t~~W~~v~~lp~~R~~~s~~v~~~~Iyv~GG~~ 555 (592)
++ .+..+|+...+= +-.+...-.-++++..-++..+.-+..
T Consensus 213 dg-----~~~LwdL~~~k~--lysl~a~~~v~sl~fspnrywL~~at~ 253 (315)
T KOG0279|consen 213 DG-----EAMLWDLNEGKN--LYSLEAFDIVNSLCFSPNRYWLCAATA 253 (315)
T ss_pred Cc-----eEEEEEccCCce--eEeccCCCeEeeEEecCCceeEeeccC
Confidence 75 355666654432 212222233344555555555555543
No 194
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=36.51 E-value=2.6e+02 Score=29.67 Aligned_cols=191 Identities=16% Similarity=0.205 Sum_probs=88.0
Q ss_pred CCEEEEEeeCCCCCCcceEEEEECCCCeEEECCCCC-------CCCcceEEEEECCEEEEEe-cCCCCcccceEEEEeCC
Q 007704 357 NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLN-------GTKGSLAGATIDNKIFAIG-GGNGLECFSDVEMLDLD 428 (592)
Q Consensus 357 ~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~lp-------~~r~~~~~~~~~~~Iyv~G-G~~~~~~~~~v~~yD~~ 428 (592)
+..+||+ +.++..+|-+-|...++-...-+.| .+-..|.+.+-+|++.-+. +.++........+|++.
T Consensus 106 gk~~~V~----N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~ 181 (342)
T PF06433_consen 106 GKFLYVQ----NFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPD 181 (342)
T ss_dssp SSEEEEE----EESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTT
T ss_pred CcEEEEE----ccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCC
Confidence 4456665 2355678889999988774332222 1212344444555543332 22333333334577776
Q ss_pred CCeEEEcccccCcccceEEEEECCEEEEE--eccCCCCCCCeeEEEeCCC-----CeEEEeccCCCCCceeEEEEE--CC
Q 007704 429 IGKWIRTRSMLQKRFALAAAELNGVLYAT--GGYDGNEYMNSAERFDPRE-----HYWTKIANMNRRRGCHSLAVL--NG 499 (592)
Q Consensus 429 t~~W~~i~~~p~~R~~~~a~~~~g~IYV~--GG~~~~~~~~~v~~yD~~t-----~~W~~i~~~p~~R~~~s~v~~--~~ 499 (592)
.+-.-.-+.............++|.+|-+ +|.. . .-...+.+.+ ..|..-+ ...++.. .+
T Consensus 182 ~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~--~--~~~~~~~~~t~~e~~~~WrPGG-------~Q~~A~~~~~~ 250 (342)
T PF06433_consen 182 DDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDS--A--KFGKPWSLLTDAEKADGWRPGG-------WQLIAYHAASG 250 (342)
T ss_dssp TS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSS--E--EEEEEEESS-HHHHHTTEEE-S-------SS-EEEETTTT
T ss_pred CcccccccceECCCCeEEEEecCCEEEEEeccCCc--c--cccCcccccCccccccCcCCcc-------eeeeeeccccC
Confidence 65322212111111223335567877774 3321 0 1111222211 2354211 1123333 67
Q ss_pred EEEEEe--cCCCC--CCCCeEEEEeCCCCeEEEcCCCCCCCcceEEEEE-CCE--EEEEecccCCCccccEEEEEcCC
Q 007704 500 KLYALG--GFDGS--AMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVV-KEA--IYVIGGVKNGSEIVDTVERFKEG 570 (592)
Q Consensus 500 ~Lyv~G--G~~~~--~~~~~v~~yD~~t~~W~~v~~lp~~R~~~s~~v~-~~~--Iyv~GG~~~~~~~~~~v~~Yd~~ 570 (592)
+||+.- |..+. ..-..||+||+.+.+=..--++..+ .-++.+. +++ +|.+-+.+ .++.+||..
T Consensus 251 rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~--~~Si~Vsqd~~P~L~~~~~~~------~~l~v~D~~ 320 (342)
T PF06433_consen 251 RLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHP--IDSIAVSQDDKPLLYALSAGD------GTLDVYDAA 320 (342)
T ss_dssp EEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEE--ESEEEEESSSS-EEEEEETTT------TEEEEEETT
T ss_pred eEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCc--cceEEEccCCCcEEEEEcCCC------CeEEEEeCc
Confidence 888873 22222 3456899999999864332222222 2244444 333 55443322 469999986
No 195
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=35.96 E-value=5e+02 Score=26.65 Aligned_cols=202 Identities=16% Similarity=0.181 Sum_probs=94.5
Q ss_pred EEECCEEEE--Eee-CCCCCCcceEEEEEC-CCCeEEE---CCCC----CC-CCcceEEEEECCEEEEEecC--CCCccc
Q 007704 354 AMLNGELYI--FGG-GDGNSWHNTVESYSP-ANDEWTS---RPSL----NG-TKGSLAGATIDNKIFAIGGG--NGLECF 419 (592)
Q Consensus 354 v~~~~~Iyv--~GG-~~~~~~~~~v~~yd~-~t~~W~~---l~~l----p~-~r~~~~~~~~~~~Iyv~GG~--~~~~~~ 419 (592)
.++++-||. .+| ..|-.-+.-.|+=.- ..++|+. +.++ |. .-.++++.++++++|++=-. -....+
T Consensus 22 FVy~~VIYAPfM~~~RHGv~~LhvaWVkSgDdG~TWttPEwLtd~H~~yptvnyHCmSMGv~~NRLfa~iEtR~~a~~km 101 (367)
T PF12217_consen 22 FVYDNVIYAPFMAGDRHGVDNLHVAWVKSGDDGQTWTTPEWLTDLHPDYPTVNYHCMSMGVVGNRLFAVIETRTVASNKM 101 (367)
T ss_dssp EEETTEEEEEEEEESSSSSTT-EEEEEEESSTTSS----EESS---TTTTTEEEE-B-EEEETTEEEEEEEEEETTT--E
T ss_pred eeecCeeecccccccccCccceEEEEEEecCCCCcccCchhhhhcCCCCCccceeeeeeeeecceeeEEEeehhhhhhhh
Confidence 446777663 444 334333333344332 2456754 2222 21 12345677899999987531 112223
Q ss_pred ceEEEEe---CCCCeEEEc--ccccC-------cccceEEEEECCEEEEEeccCCCCCCCee--EEEeC----CCC-eEE
Q 007704 420 SDVEMLD---LDIGKWIRT--RSMLQ-------KRFALAAAELNGVLYATGGYDGNEYMNSA--ERFDP----REH-YWT 480 (592)
Q Consensus 420 ~~v~~yD---~~t~~W~~i--~~~p~-------~R~~~~a~~~~g~IYV~GG~~~~~~~~~v--~~yD~----~t~-~W~ 480 (592)
...+.|| ...+.|+.. +..+. .-.-|+.|.+++.=|.+|=.++...-..+ ..|.. ... .=+
T Consensus 102 ~~~~Lw~RpMF~~spW~~teL~~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHnGD~sPRe~G~~yfs~~~~sp~~~vrr 181 (367)
T PF12217_consen 102 VRAELWSRPMFHDSPWRITELGTIASFTSAGVAVTELHSFATIDDNQFAVGYHNGDVSPRELGFLYFSDAFASPGVFVRR 181 (367)
T ss_dssp EEEEEEEEE-STTS--EEEEEES-TT--------SEEEEEEE-SSS-EEEEEEE-SSSS-EEEEEEETTTTT-TT--EEE
T ss_pred hhhhhhcccccccCCceeeecccccccccccceeeeeeeeeEecCCceeEEeccCCCCcceeeEEEecccccCCcceeee
Confidence 3455555 356788753 33333 34568888888888888866665433333 22211 111 122
Q ss_pred EeccC-CCCCceeEEEEECCEEEEEe-cCCCCCCCCeEEEEeCCCCeEEEcCCC-CCCCcceEEEEECCEEEEEeccc
Q 007704 481 KIANM-NRRRGCHSLAVLNGKLYALG-GFDGSAMVPSIEVYDPRLGSWMSGEPM-KLSRGYLGAAVVKEAIYVIGGVK 555 (592)
Q Consensus 481 ~i~~~-p~~R~~~s~v~~~~~Lyv~G-G~~~~~~~~~v~~yD~~t~~W~~v~~l-p~~R~~~s~~v~~~~Iyv~GG~~ 555 (592)
.+++- ...-+-.|+-.+++.||+.- |......-+.+.+-+..-..|..+.-. ..--...-.+..++.||+||...
T Consensus 182 ~i~sey~~~AsEPCvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~slrfp~nvHhtnlPFakvgD~l~mFgsER 259 (367)
T PF12217_consen 182 IIPSEYERNASEPCVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSLRFPNNVHHTNLPFAKVGDVLYMFGSER 259 (367)
T ss_dssp E--GGG-TTEEEEEEEEETTEEEEEEEES-TTS---EEEEESSTTSS-EEEE-TT---SS---EEEETTEEEEEEE-S
T ss_pred echhhhccccccchhhhhCCEEEEEEcCcCCCCCcceeeeecccCCchhhccccccccccCCCceeeCCEEEEEeccc
Confidence 33322 22234455666799999974 443334456677777777889887421 11122334567899999999653
No 196
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=35.72 E-value=3.7e+02 Score=25.72 Aligned_cols=89 Identities=13% Similarity=0.113 Sum_probs=47.0
Q ss_pred CCEEEEEeccCCCCCCCeeEEEeCCCCeEEEeccCCCCCceeEEEEE--CCEEEEEecCCCCCCCCeEEEEeCCCCeEEE
Q 007704 451 NGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL--NGKLYALGGFDGSAMVPSIEVYDPRLGSWMS 528 (592)
Q Consensus 451 ~g~IYV~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~~s~v~~--~~~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~ 528 (592)
+.++.|+-|.. -..+..||++. ..+...+..... .+.. +|+.+++||.... ..++..||..+ +..
T Consensus 71 g~~favi~g~~----~~~v~lyd~~~---~~i~~~~~~~~n--~i~wsP~G~~l~~~g~~n~--~G~l~~wd~~~--~~~ 137 (194)
T PF08662_consen 71 GNEFAVIYGSM----PAKVTLYDVKG---KKIFSFGTQPRN--TISWSPDGRFLVLAGFGNL--NGDLEFWDVRK--KKK 137 (194)
T ss_pred CCEEEEEEccC----CcccEEEcCcc---cEeEeecCCCce--EEEECCCCCEEEEEEccCC--CcEEEEEECCC--CEE
Confidence 56676665522 13678899863 333223222111 2333 7888888886532 25689999884 444
Q ss_pred cCCCCCCCcceEEEEE--CCEEEEEecc
Q 007704 529 GEPMKLSRGYLGAAVV--KEAIYVIGGV 554 (592)
Q Consensus 529 v~~lp~~R~~~s~~v~--~~~Iyv~GG~ 554 (592)
+.....+. .+.+.. +++.++....
T Consensus 138 i~~~~~~~--~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 138 ISTFEHSD--ATDVEWSPDGRYLATATT 163 (194)
T ss_pred eeccccCc--EEEEEEcCCCCEEEEEEe
Confidence 44433332 122222 5565555543
No 197
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=35.17 E-value=4.9e+02 Score=26.35 Aligned_cols=186 Identities=16% Similarity=0.171 Sum_probs=99.1
Q ss_pred EEEEECCCCeEEECCCCCCCCcceEEEEECCEEEEEecCCCCcccceEEEEeC----CCCeEEEcccccCcccceEEEEE
Q 007704 375 VESYSPANDEWTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDL----DIGKWIRTRSMLQKRFALAAAEL 450 (592)
Q Consensus 375 v~~yd~~t~~W~~l~~lp~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~v~~yD~----~t~~W~~i~~~p~~R~~~~a~~~ 450 (592)
+.......+.|.+=|. | + ++++|++.+..+ ..+.-|.. ..+.|...-.+|.+-.+..-+++
T Consensus 12 ~~~~~~~~GsWmrDpl-~--~--------~~r~~~~~~~~~----~~l~E~~~~~~~~~~~~~~~~~lp~~~~gTg~VVy 76 (249)
T KOG3545|consen 12 VKTAGPRFGAWMRDPL-P--A--------DDRIYVMNYFDG----LMLTEYTNLEDFKRGRKAEKYRLPYSWDGTGHVVY 76 (249)
T ss_pred EEeeccccceeecCCC-c--c--------cCceEEeccccC----ceEEEeccHHHhhccCcceEEeCCCCccccceEEE
Confidence 4455556677755321 1 1 678888854332 33444433 33445555567777777778888
Q ss_pred CCEEEEEeccCCCCCCCeeEEEeCCCCe---EEEeccCC------CCCceeE---EEEECCEEEEEecCCCCCCCCeEEE
Q 007704 451 NGVLYATGGYDGNEYMNSAERFDPREHY---WTKIANMN------RRRGCHS---LAVLNGKLYALGGFDGSAMVPSIEV 518 (592)
Q Consensus 451 ~g~IYV~GG~~~~~~~~~v~~yD~~t~~---W~~i~~~p------~~R~~~s---~v~~~~~Lyv~GG~~~~~~~~~v~~ 518 (592)
+|.+|.-.+ ..+.+.+||+++.. |..++.+. -...+|+ .++-..-|+++=-..+.....-+..
T Consensus 77 nGs~yynk~-----~t~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~GLWviYat~~~~g~iv~sk 151 (249)
T KOG3545|consen 77 NGSLYYNKA-----GTRNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLAVDENGLWVIYATPENAGTIVLSK 151 (249)
T ss_pred cceEEeecc-----CCcceEEEEeecceeeeeeeccccccCCCcccccCCCccccceecccceeEEecccccCCcEEeec
Confidence 998887653 23668899998854 55554331 1111222 1222233444422222211122366
Q ss_pred EeCCC----CeEEEcCCCCCCCcceEEEEECCEEEEEecccCCCccccEE-EEEcCC-CcEEEccccCCCCccce
Q 007704 519 YDPRL----GSWMSGEPMKLSRGYLGAAVVKEAIYVIGGVKNGSEIVDTV-ERFKEG-QGWEEINSRAIGKRCFM 587 (592)
Q Consensus 519 yD~~t----~~W~~v~~lp~~R~~~s~~v~~~~Iyv~GG~~~~~~~~~~v-~~Yd~~-~~W~~v~~~p~~~r~~~ 587 (592)
+|+.+ .+|..- + ..+....+.++-|.+|++-..+... ..+ +.||.. ++= +..++|...+..+
T Consensus 152 Ldp~tl~~e~tW~T~--~-~k~~~~~aF~iCGvLY~v~S~~~~~---~~i~yaydt~~~~~-~~~~ipf~N~y~~ 219 (249)
T KOG3545|consen 152 LDPETLEVERTWNTT--L-PKRSAGNAFMICGVLYVVHSYNCTH---TQISYAYDTTTGTQ-ERIDLPFPNPYSY 219 (249)
T ss_pred cCHHHhheeeeeccc--c-CCCCcCceEEEeeeeEEEeccccCC---ceEEEEEEcCCCce-ecccccccchhhh
Confidence 77743 456432 1 2234445566678889887776542 223 688876 443 4445565554443
No 198
>PRK01029 tolB translocation protein TolB; Provisional
Probab=34.76 E-value=6.3e+02 Score=27.50 Aligned_cols=189 Identities=15% Similarity=0.004 Sum_probs=86.7
Q ss_pred ceEEEEECCCCeEEECCCCCCCCcceEEEEECC-EEEEEecCCCCcccceEEE--EeCCCC---eEEEcccccCcccceE
Q 007704 373 NTVESYSPANDEWTSRPSLNGTKGSLAGATIDN-KIFAIGGGNGLECFSDVEM--LDLDIG---KWIRTRSMLQKRFALA 446 (592)
Q Consensus 373 ~~v~~yd~~t~~W~~l~~lp~~r~~~~~~~~~~-~Iyv~GG~~~~~~~~~v~~--yD~~t~---~W~~i~~~p~~R~~~~ 446 (592)
.++|.+|..+++-..+...+...... ..+-+| +|.+.....+ ..++++ ||..++ .=+.+...........
T Consensus 211 ~~I~~~~l~~g~~~~lt~~~g~~~~p-~wSPDG~~Laf~s~~~g---~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p 286 (428)
T PRK01029 211 PKIFLGSLENPAGKKILALQGNQLMP-TFSPRKKLLAFISDRYG---NPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNP 286 (428)
T ss_pred ceEEEEECCCCCceEeecCCCCccce-EECCCCCEEEEEECCCC---CcceeEEEeecccCCCCcceEeecCCCCCcCCe
Confidence 57999999988877776655433321 222344 4544432221 123444 455442 1112211111111111
Q ss_pred EEEECCE-EEEEeccCCCCCCCeeEEEeCCC-Ce-EEEeccCCCCCceeEEEEE--CCEEEEEecCCCCCCCCeEEEEeC
Q 007704 447 AAELNGV-LYATGGYDGNEYMNSAERFDPRE-HY-WTKIANMNRRRGCHSLAVL--NGKLYALGGFDGSAMVPSIEVYDP 521 (592)
Q Consensus 447 a~~~~g~-IYV~GG~~~~~~~~~v~~yD~~t-~~-W~~i~~~p~~R~~~s~v~~--~~~Lyv~GG~~~~~~~~~v~~yD~ 521 (592)
...-+|+ |+.....++ ...+++++... +. =..+.... .. ...... +|+.+++.+.... ...+++||+
T Consensus 287 ~wSPDG~~Laf~s~~~g---~~~ly~~~~~~~g~~~~~lt~~~--~~-~~~p~wSPDG~~Laf~~~~~g--~~~I~v~dl 358 (428)
T PRK01029 287 SFSPDGTRLVFVSNKDG---RPRIYIMQIDPEGQSPRLLTKKY--RN-SSCPAWSPDGKKIAFCSVIKG--VRQICVYDL 358 (428)
T ss_pred EECCCCCEEEEEECCCC---CceEEEEECcccccceEEeccCC--CC-ccceeECCCCCEEEEEEcCCC--CcEEEEEEC
Confidence 1122454 444332222 24677777642 11 12222111 11 111222 4543443332221 357999999
Q ss_pred CCCeEEEcCCCCCCCcceEEEEE-CCEEEEEecccCCCccccEEEEEcCC-CcEEEccc
Q 007704 522 RLGSWMSGEPMKLSRGYLGAAVV-KEAIYVIGGVKNGSEIVDTVERFKEG-QGWEEINS 578 (592)
Q Consensus 522 ~t~~W~~v~~lp~~R~~~s~~v~-~~~Iyv~GG~~~~~~~~~~v~~Yd~~-~~W~~v~~ 578 (592)
.++..+.+..-+ +........ +++.+++...... ...++.+|.. .....+..
T Consensus 359 ~~g~~~~Lt~~~--~~~~~p~wSpDG~~L~f~~~~~g---~~~L~~vdl~~g~~~~Lt~ 412 (428)
T PRK01029 359 ATGRDYQLTTSP--ENKESPSWAIDSLHLVYSAGNSN---ESELYLISLITKKTRKIVI 412 (428)
T ss_pred CCCCeEEccCCC--CCccceEECCCCCEEEEEECCCC---CceEEEEECCCCCEEEeec
Confidence 999988876432 111222222 4554444332221 2679999987 77776643
No 199
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.50 E-value=1.7e+02 Score=23.45 Aligned_cols=44 Identities=25% Similarity=0.267 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHhhhh
Q 007704 262 QSIINELIKEVAELKAFKTEQTLKMKELEQKLVDAEAEIQRLKE 305 (592)
Q Consensus 262 ~~~i~~l~~e~~~l~~~~~~~~~~~~~l~~~~~~~~rki~~l~e 305 (592)
+++|.-|+=|++++..++..+.++....+...+..+++-.++++
T Consensus 17 vdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~ 60 (79)
T COG3074 17 IDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKE 60 (79)
T ss_pred HHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677777778888777777777776666666777776666665
No 200
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=34.33 E-value=3.7e+02 Score=26.78 Aligned_cols=97 Identities=20% Similarity=0.277 Sum_probs=63.7
Q ss_pred EEEECCEEEEEecCCCCcccceEEEEeCCCCeEEEccccc-CcccceEEEEECCEEEEEeccCCCCCCCeeEEEeCCCCe
Q 007704 400 GATIDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSML-QKRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHY 478 (592)
Q Consensus 400 ~~~~~~~Iyv~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p-~~R~~~~a~~~~g~IYV~GG~~~~~~~~~v~~yD~~t~~ 478 (592)
....+|+||.--|..+ .+.+..+|+.+++=..-.+++ ..-++-..+.+++.+|..-=.++ -.+.||+.+
T Consensus 51 L~~~~g~i~esTG~yg---~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~eg-----vaf~~d~~t-- 120 (262)
T COG3823 51 LEYLDGHILESTGLYG---FSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEG-----VAFKYDADT-- 120 (262)
T ss_pred eeeeCCEEEEeccccc---cceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccc-----eeEEEChHH--
Confidence 4456888888766443 478999999977643333333 34477888889999999854332 246676654
Q ss_pred EEEeccCCCCCceeEEEEECCEEEEEec
Q 007704 479 WTKIANMNRRRGCHSLAVLNGKLYALGG 506 (592)
Q Consensus 479 W~~i~~~p~~R~~~s~v~~~~~Lyv~GG 506 (592)
...+...+...-+.+.+.-+..|++-.|
T Consensus 121 ~~~lg~~~y~GeGWgLt~d~~~LimsdG 148 (262)
T COG3823 121 LEELGRFSYEGEGWGLTSDDKNLIMSDG 148 (262)
T ss_pred hhhhcccccCCcceeeecCCcceEeeCC
Confidence 3445555556666777777777777766
No 201
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=33.80 E-value=4.2e+02 Score=27.89 Aligned_cols=96 Identities=19% Similarity=0.348 Sum_probs=52.0
Q ss_pred ceEEEEECCCCe-EEECCCCCCCCcceEEEEE---CCEEEEEecCCCCcccceEEEEeC-CCCeEEEcccccCcccceEE
Q 007704 373 NTVESYSPANDE-WTSRPSLNGTKGSLAGATI---DNKIFAIGGGNGLECFSDVEMLDL-DIGKWIRTRSMLQKRFALAA 447 (592)
Q Consensus 373 ~~v~~yd~~t~~-W~~l~~lp~~r~~~~~~~~---~~~Iyv~GG~~~~~~~~~v~~yD~-~t~~W~~i~~~p~~R~~~~a 447 (592)
+++.+|....+. |.....+...-..-+.+-. .++| |-++.+ ...+++.. ..++|.+..-+. |.+-++
T Consensus 32 ~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrI-vtcs~d-----rnayVw~~~~~~~WkptlvLl--RiNrAA 103 (361)
T KOG1523|consen 32 HEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRI-VTCSHD-----RNAYVWTQPSGGTWKPTLVLL--RINRAA 103 (361)
T ss_pred ceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCce-eEccCC-----CCccccccCCCCeeccceeEE--Eeccce
Confidence 588999988888 9877555432222222222 3445 333333 23456655 778998765433 232223
Q ss_pred EEE-----CCEEEEEeccCCCCCCCeeEEEeCCCCeEE
Q 007704 448 AEL-----NGVLYATGGYDGNEYMNSAERFDPREHYWT 480 (592)
Q Consensus 448 ~~~-----~g~IYV~GG~~~~~~~~~v~~yD~~t~~W~ 480 (592)
..+ ++++-|-+| .-+-++..|.-+++-|-
T Consensus 104 t~V~WsP~enkFAVgSg----ar~isVcy~E~ENdWWV 137 (361)
T KOG1523|consen 104 TCVKWSPKENKFAVGSG----ARLISVCYYEQENDWWV 137 (361)
T ss_pred eeEeecCcCceEEeccC----ccEEEEEEEecccceeh
Confidence 222 455544444 22456777877766663
No 202
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=33.32 E-value=8.1e+02 Score=28.32 Aligned_cols=213 Identities=18% Similarity=0.197 Sum_probs=93.9
Q ss_pred ccCCCccCcceEEEEE-CCEEEEEeeCCCCCCcceEEEEECCCCeEEE-CCCCCCCCcceEEEE-ECCEEEEEecCCCCc
Q 007704 341 YLPMSSARSYASAAML-NGELYIFGGGDGNSWHNTVESYSPANDEWTS-RPSLNGTKGSLAGAT-IDNKIFAIGGGNGLE 417 (592)
Q Consensus 341 ~~p~p~~R~~~s~v~~-~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~-l~~lp~~r~~~~~~~-~~~~Iyv~GG~~~~~ 417 (592)
.++.|.-|+--+.|.. ++++|-.|+.+ .+-.||+.+.+=.. +.+...+- .+++. -.+.+..+|-.++
T Consensus 63 vi~g~~drsIE~L~W~e~~RLFS~g~sg------~i~EwDl~~lk~~~~~d~~gg~I--Wsiai~p~~~~l~IgcddG-- 132 (691)
T KOG2048|consen 63 VIHGPEDRSIESLAWAEGGRLFSSGLSG------SITEWDLHTLKQKYNIDSNGGAI--WSIAINPENTILAIGCDDG-- 132 (691)
T ss_pred EEecCCCCceeeEEEccCCeEEeecCCc------eEEEEecccCceeEEecCCCcce--eEEEeCCccceEEeecCCc--
Confidence 3456677777777777 88999998844 24444444432111 11110100 11111 1233444432111
Q ss_pred ccceEEEEeCCCCeEEEcccccCcccceEEEEECCEEE-EEeccCCCCCCCeeEEEeCCCCeEEEeccC---C----CCC
Q 007704 418 CFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNGVLY-ATGGYDGNEYMNSAERFDPREHYWTKIANM---N----RRR 489 (592)
Q Consensus 418 ~~~~v~~yD~~t~~W~~i~~~p~~R~~~~a~~~~g~IY-V~GG~~~~~~~~~v~~yD~~t~~W~~i~~~---p----~~R 489 (592)
-++.++...+.-+.-..++......-....+.... ++||..+. -+-++|..++.=-.+-.| . .+-
T Consensus 133 ---vl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg----~Iriwd~~~~~t~~~~~~~~d~l~k~~~~ 205 (691)
T KOG2048|consen 133 ---VLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDG----VIRIWDVKSGQTLHIITMQLDRLSKREPT 205 (691)
T ss_pred ---eEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCc----eEEEEEcCCCceEEEeeecccccccCCce
Confidence 22333333333322222332222222333444444 66664321 144566554432222111 1 122
Q ss_pred ceeEEEEECCEEEEEecCCCCCCCCeEEEEeCCCCeEEEcCCCCCCCcceEEEEECC-EEEEEecccCCCccccEEEEEc
Q 007704 490 GCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVVKE-AIYVIGGVKNGSEIVDTVERFK 568 (592)
Q Consensus 490 ~~~s~v~~~~~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~lp~~R~~~s~~v~~~-~Iyv~GG~~~~~~~~~~v~~Yd 568 (592)
.-.++..+.+..++.|-.. ..|..+|....+-.+--..- .....++++-++ .-++.+|.+. .+..|.
T Consensus 206 iVWSv~~Lrd~tI~sgDS~-----G~V~FWd~~~gTLiqS~~~h-~adVl~Lav~~~~d~vfsaGvd~------~ii~~~ 273 (691)
T KOG2048|consen 206 IVWSVLFLRDSTIASGDSA-----GTVTFWDSIFGTLIQSHSCH-DADVLALAVADNEDRVFSAGVDP------KIIQYS 273 (691)
T ss_pred EEEEEEEeecCcEEEecCC-----ceEEEEcccCcchhhhhhhh-hcceeEEEEcCCCCeEEEccCCC------ceEEEE
Confidence 2344555666666666543 35777887765433311111 112234555533 4555577654 355665
Q ss_pred CC---CcEEEccccCCC
Q 007704 569 EG---QGWEEINSRAIG 582 (592)
Q Consensus 569 ~~---~~W~~v~~~p~~ 582 (592)
.+ ..|.........
T Consensus 274 ~~~~~~~wv~~~~r~~h 290 (691)
T KOG2048|consen 274 LTTNKSEWVINSRRDLH 290 (691)
T ss_pred ecCCccceeeeccccCC
Confidence 44 448776553333
No 203
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=33.32 E-value=4.9e+02 Score=25.79 Aligned_cols=199 Identities=11% Similarity=0.139 Sum_probs=95.3
Q ss_pred CCCeEEECC---CCC--CCCcceEEEEE--CCEEEEEec--CCCC--cccceEEEEeCC-CCeEEEcccccCc------c
Q 007704 381 ANDEWTSRP---SLN--GTKGSLAGATI--DNKIFAIGG--GNGL--ECFSDVEMLDLD-IGKWIRTRSMLQK------R 442 (592)
Q Consensus 381 ~t~~W~~l~---~lp--~~r~~~~~~~~--~~~Iyv~GG--~~~~--~~~~~v~~yD~~-t~~W~~i~~~p~~------R 442 (592)
...+|.... ..+ ..+....+.+. +++|+++-. .... ....-.+..... -.+|+....++.. .
T Consensus 28 ~G~tWs~~~~v~~~~~~~~~~~~p~~~~~~~g~l~l~~~~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~~~~~~ 107 (275)
T PF13088_consen 28 GGKTWSEPRIVADGPKPGRRYGNPSLVVDPDGRLWLFYSAGSSGGGWSGSRIYYSRSTDGGKTWSEPTDLPPGWFGNFSG 107 (275)
T ss_dssp CTTEEEEEEEEETSTBTTCEEEEEEEEEETTSEEEEEEEEEETTESCCTCEEEEEEESSTTSS-EEEEEEHHHCCCSCEE
T ss_pred CCCeeCCCEEEeeccccCCcccCcEEEEeCCCCEEEEEEEccCCCCCCceeEEEEEECCCCCCCCCccccccccccceec
Confidence 346797642 222 22222333332 889888862 1111 111112345554 4689876543322 1
Q ss_pred --cceEEEEECCEEEEEeccCCCCCCCeeEEEeCC-CCeEEEeccCCCC-CceeEEE-EE-CCEEEEEecCCCCCCCCeE
Q 007704 443 --FALAAAELNGVLYATGGYDGNEYMNSAERFDPR-EHYWTKIANMNRR-RGCHSLA-VL-NGKLYALGGFDGSAMVPSI 516 (592)
Q Consensus 443 --~~~~a~~~~g~IYV~GG~~~~~~~~~v~~yD~~-t~~W~~i~~~p~~-R~~~s~v-~~-~~~Lyv~GG~~~~~~~~~v 516 (592)
.......-+|.+++..-............|... ..+|+.....+.. .....+. .. ++.|+++--..... .-.
T Consensus 108 ~~~~~~i~~~~G~l~~~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~~~~~~~e~~~~~~~dG~l~~~~R~~~~~--~~~ 185 (275)
T PF13088_consen 108 PGRGPPIQLPDGRLIAPYYHESGGSFSAFVYYSDDGGKTWSSGSPIPDGQGECEPSIVELPDGRLLAVFRTEGND--DIY 185 (275)
T ss_dssp CSEEEEEEECTTEEEEEEEEESSCEEEEEEEEESSTTSSEEEEEECECSEEEEEEEEEEETTSEEEEEEEECSST--EEE
T ss_pred cceeeeeEecCCCEEEEEeeccccCcceEEEEeCCCCceeeccccccccCCcceeEEEECCCCcEEEEEEccCCC--cEE
Confidence 122233448888877211111122334445555 4569988766432 3333333 33 78888886532111 223
Q ss_pred EEEeCC-CCeEEEcC--CCCCCCcceEEEEE-CCEEEEEecccCCCccccEEEEEcCC-CcEEEccccCCC
Q 007704 517 EVYDPR-LGSWMSGE--PMKLSRGYLGAAVV-KEAIYVIGGVKNGSEIVDTVERFKEG-QGWEEINSRAIG 582 (592)
Q Consensus 517 ~~yD~~-t~~W~~v~--~lp~~R~~~s~~v~-~~~Iyv~GG~~~~~~~~~~v~~Yd~~-~~W~~v~~~p~~ 582 (592)
+.+-.+ -.+|+... .+|.+.....+..+ ++.++++...... ...-.+.+-..+ .+|.....+..+
T Consensus 186 ~~~S~D~G~TWs~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-r~~l~l~~S~D~g~tW~~~~~i~~~ 255 (275)
T PF13088_consen 186 ISRSTDGGRTWSPPQPTNLPNPNSSISLVRLSDGRLLLVYNNPDG-RSNLSLYVSEDGGKTWSRPKTIDDG 255 (275)
T ss_dssp EEEESSTTSS-EEEEEEECSSCCEEEEEEECTTSEEEEEEECSST-SEEEEEEEECTTCEEEEEEEEEEEE
T ss_pred EEEECCCCCcCCCceecccCcccCCceEEEcCCCCEEEEEECCCC-CCceEEEEEeCCCCcCCccEEEeCC
Confidence 333333 34798854 45666555555554 5688888773222 222223333333 889876554433
No 204
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=32.86 E-value=5.7e+02 Score=26.38 Aligned_cols=196 Identities=15% Similarity=0.148 Sum_probs=0.0
Q ss_pred CCEEEEEeeCCCCCCcceEEEEECC-------CCeEEECCCCCCCCcceEEEEECCEEEEEecCCCCcccceEEEEeCCC
Q 007704 357 NGELYIFGGGDGNSWHNTVESYSPA-------NDEWTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDI 429 (592)
Q Consensus 357 ~~~Iyv~GG~~~~~~~~~v~~yd~~-------t~~W~~l~~lp~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~v~~yD~~t 429 (592)
++.++++---..-.....+..||.+ .++=...-++|.....-+.-..-++.+|.|+.++ .+-+||..+
T Consensus 104 ~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G-----~is~~da~~ 178 (327)
T KOG0643|consen 104 GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDG-----SISIYDART 178 (327)
T ss_pred CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCC-----cEEEEEccc
Q ss_pred C-eEEEcccccCcccceEEEEECCEEEEEeccCCCCCCCeeEEEeCCCCeEEEeccCCCCCceeEEEEECCEEEEEecCC
Q 007704 430 G-KWIRTRSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVLNGKLYALGGFD 508 (592)
Q Consensus 430 ~-~W~~i~~~p~~R~~~~a~~~~g~IYV~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~~s~v~~~~~Lyv~GG~~ 508 (592)
+ ..............--...-+...+|.|..+ ...-.+|..+-.-.+.-....|.-..++..+.+.+++-||.+
T Consensus 179 g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~D-----ttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqe 253 (327)
T KOG0643|consen 179 GKELVDSDEEHSSKINDLQFSRDRTYFITGSKD-----TTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQE 253 (327)
T ss_pred CceeeechhhhccccccccccCCcceEEecccC-----ccceeeeccceeeEEEeeecccccceecccccceEEecCCce
Q ss_pred CCCCCCeEEEEeCCCCeE----------EEcCCCCCCCcceEEEEE--CCEEEEEecccCCCccccEEEEEcCC
Q 007704 509 GSAMVPSIEVYDPRLGSW----------MSGEPMKLSRGYLGAAVV--KEAIYVIGGVKNGSEIVDTVERFKEG 570 (592)
Q Consensus 509 ~~~~~~~v~~yD~~t~~W----------~~v~~lp~~R~~~s~~v~--~~~Iyv~GG~~~~~~~~~~v~~Yd~~ 570 (592)
..+|-.=..+..++ ++++...---+.-..+.+ +++.|.-||.++- -.++.||.+
T Consensus 254 ----A~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~----VR~h~Fd~~ 319 (327)
T KOG0643|consen 254 ----AMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGY----VRLHHFDSN 319 (327)
T ss_pred ----eeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCce----EEEEEeccc
No 205
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=32.80 E-value=6.1e+02 Score=26.74 Aligned_cols=101 Identities=15% Similarity=0.206 Sum_probs=56.4
Q ss_pred cceEEEEeCCCCe-EEEcccccCcccceEEEEE---CCEEEEEeccCCCCCCCeeEEEeC-CCCeEEEeccCCCCCceeE
Q 007704 419 FSDVEMLDLDIGK-WIRTRSMLQKRFALAAAEL---NGVLYATGGYDGNEYMNSAERFDP-REHYWTKIANMNRRRGCHS 493 (592)
Q Consensus 419 ~~~v~~yD~~t~~-W~~i~~~p~~R~~~~a~~~---~g~IYV~GG~~~~~~~~~v~~yD~-~t~~W~~i~~~p~~R~~~s 493 (592)
.+++.+|.-.... |+....+..--..-.++-. .++ +|.++.+.+ .|++.+ ..++|....-+..--....
T Consensus 31 ~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snr-Ivtcs~drn-----ayVw~~~~~~~WkptlvLlRiNrAAt 104 (361)
T KOG1523|consen 31 NHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNR-IVTCSHDRN-----AYVWTQPSGGTWKPTLVLLRINRAAT 104 (361)
T ss_pred CceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCc-eeEccCCCC-----ccccccCCCCeeccceeEEEecccee
Confidence 4589999888887 9887544321111111111 233 355555533 456665 7888986654443323334
Q ss_pred EEEE--CCEEEEEecCCCCCCCCeEEEEeCCCCeEEE
Q 007704 494 LAVL--NGKLYALGGFDGSAMVPSIEVYDPRLGSWMS 528 (592)
Q Consensus 494 ~v~~--~~~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~ 528 (592)
+|.. ++..|++|+. ...-.|+.|.-+.+=|..
T Consensus 105 ~V~WsP~enkFAVgSg---ar~isVcy~E~ENdWWVs 138 (361)
T KOG1523|consen 105 CVKWSPKENKFAVGSG---ARLISVCYYEQENDWWVS 138 (361)
T ss_pred eEeecCcCceEEeccC---ccEEEEEEEecccceehh
Confidence 4444 5556666652 234567788777776654
No 206
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=32.78 E-value=4.1e+02 Score=27.90 Aligned_cols=147 Identities=16% Similarity=0.225 Sum_probs=0.0
Q ss_pred CEEEEEeeCCCCCCcceEEEEECCCCeEEECCCCCCCCcceEEEEE--CCEEEEEecCCCCcccceEEEEeCCCCeEEEc
Q 007704 358 GELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATI--DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRT 435 (592)
Q Consensus 358 ~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~lp~~r~~~~~~~~--~~~Iyv~GG~~~~~~~~~v~~yD~~t~~W~~i 435 (592)
..|++-|..+ +.+-.||...-.-++.-..-.....-.+.+. .|...++| .-...+-.||..|-+- .+
T Consensus 184 e~ILiS~srD-----~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvg-----TdHp~~rlYdv~T~Qc-fv 252 (430)
T KOG0640|consen 184 ETILISGSRD-----NTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVG-----TDHPTLRLYDVNTYQC-FV 252 (430)
T ss_pred hheEEeccCC-----CeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEe-----cCCCceeEEeccceeE-ee
Q ss_pred ccccCcccceEEEEE----CCEEEEEeccCCCCCCCeeEEEeCCCCeEEEeccCCCCCceeEEEEE--CCEEEEEecCCC
Q 007704 436 RSMLQKRFALAAAEL----NGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL--NGKLYALGGFDG 509 (592)
Q Consensus 436 ~~~p~~R~~~~a~~~----~g~IYV~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~~s~v~~--~~~Lyv~GG~~~ 509 (592)
+..|...+.-+.+.+ .++|||.|..+ ..+-.||-.++...+.-.--.....-+.+.+ |++.++..|.+
T Consensus 253 sanPd~qht~ai~~V~Ys~t~~lYvTaSkD-----G~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~D- 326 (430)
T KOG0640|consen 253 SANPDDQHTGAITQVRYSSTGSLYVTASKD-----GAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKD- 326 (430)
T ss_pred ecCcccccccceeEEEecCCccEEEEeccC-----CcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCc-
Q ss_pred CCCCCeEEEEeCCCCe
Q 007704 510 SAMVPSIEVYDPRLGS 525 (592)
Q Consensus 510 ~~~~~~v~~yD~~t~~ 525 (592)
+.+..+.+.+++
T Consensus 327 ----S~vkLWEi~t~R 338 (430)
T KOG0640|consen 327 ----STVKLWEISTGR 338 (430)
T ss_pred ----ceeeeeeecCCc
No 207
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=32.65 E-value=7.8e+02 Score=27.93 Aligned_cols=130 Identities=16% Similarity=0.271 Sum_probs=66.4
Q ss_pred ceEEEEeCCCCeEEEcccccCcccceEEEEECCEEEEEeccCCCCCCCeeEEEeCCCCeEEEeccCCCCCceeEEEEECC
Q 007704 420 SDVEMLDLDIGKWIRTRSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVLNG 499 (592)
Q Consensus 420 ~~v~~yD~~t~~W~~i~~~p~~R~~~~a~~~~g~IYV~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~~s~v~~~~ 499 (592)
+.+.++|..+++-..+-.- .-..-.++.+++.+.|.|.+++ .+-+||+.+.+--..-.. ....- ..+.+++
T Consensus 311 ~tVkVW~v~n~~~l~l~~~--h~~~V~~v~~~~~~lvsgs~d~-----~v~VW~~~~~~cl~sl~g-H~~~V-~sl~~~~ 381 (537)
T KOG0274|consen 311 NTVKVWDVTNGACLNLLRG--HTGPVNCVQLDEPLLVSGSYDG-----TVKVWDPRTGKCLKSLSG-HTGRV-YSLIVDS 381 (537)
T ss_pred ceEEEEeccCcceEEEecc--ccccEEEEEecCCEEEEEecCc-----eEEEEEhhhceeeeeecC-CcceE-EEEEecC
Confidence 5778888876654332110 1111223345677778887663 567788775443222111 11111 1224455
Q ss_pred -EEEEEecCCCCCCCCeEEEEeCCCCeEEEcCCCCCCCcceEEEEECCEEEEEecccCCCccccEEEEEcCC
Q 007704 500 -KLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVVKEAIYVIGGVKNGSEIVDTVERFKEG 570 (592)
Q Consensus 500 -~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~lp~~R~~~s~~v~~~~Iyv~GG~~~~~~~~~~v~~Yd~~ 570 (592)
..++-|+.+ ..|.++|+.+.. +.+-.+......-....+.+.+++-+..++ .|.+||.+
T Consensus 382 ~~~~~Sgs~D-----~~IkvWdl~~~~-~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~------~Ik~WD~~ 441 (537)
T KOG0274|consen 382 ENRLLSGSLD-----TTIKVWDLRTKR-KCIHTLQGHTSLVSSLLLRDNFLVSSSADG------TIKLWDAE 441 (537)
T ss_pred cceEEeeeec-----cceEeecCCchh-hhhhhhcCCcccccccccccceeEeccccc------cEEEeecc
Confidence 666667665 457788887764 333333333332233344566666666543 46666654
No 208
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=31.25 E-value=6.2e+02 Score=26.32 Aligned_cols=181 Identities=15% Similarity=0.117 Sum_probs=94.9
Q ss_pred eEEEEECCCCeEEECCCCCCC--CcceEEEEE--CCEEEEEecCCCCcccceEEEEeCCCCeEEEcccccCcccceEEEE
Q 007704 374 TVESYSPANDEWTSRPSLNGT--KGSLAGATI--DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAE 449 (592)
Q Consensus 374 ~v~~yd~~t~~W~~l~~lp~~--r~~~~~~~~--~~~Iyv~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~~~a~~ 449 (592)
-+-++|+++..-++.+ +|.. -...-.+++ .|.++..|-..... .+||.++.-+.. +.|..-.-..+|+
T Consensus 125 aI~R~dpkt~evt~f~-lp~~~a~~nlet~vfD~~G~lWFt~q~G~yG------rLdPa~~~i~vf-paPqG~gpyGi~a 196 (353)
T COG4257 125 AIGRLDPKTLEVTRFP-LPLEHADANLETAVFDPWGNLWFTGQIGAYG------RLDPARNVISVF-PAPQGGGPYGICA 196 (353)
T ss_pred eeEEecCcccceEEee-cccccCCCcccceeeCCCccEEEeeccccce------ecCcccCceeee-ccCCCCCCcceEE
Confidence 5778888887666553 2222 233334445 46777776421111 566666543322 2223222233333
Q ss_pred -ECCEEEEEeccCCCCCCCeeEEEeCCCCeEEEeccCCCCCce--eEEEEECCEEEEEecCCCCCCCCeEEEEeCCCCeE
Q 007704 450 -LNGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGC--HSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLGSW 526 (592)
Q Consensus 450 -~~g~IYV~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~--~s~v~~~~~Lyv~GG~~~~~~~~~v~~yD~~t~~W 526 (592)
-+|.+|+..=. -+-+-..|+.+..=+.++.......+ -.-+.-.+++++. ......+.+|||....|
T Consensus 197 tpdGsvwyasla-----gnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wit-----twg~g~l~rfdPs~~sW 266 (353)
T COG4257 197 TPDGSVWYASLA-----GNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWIT-----TWGTGSLHRFDPSVTSW 266 (353)
T ss_pred CCCCcEEEEecc-----ccceEEcccccCCcceecCCCcccccccccccCccCcEEEe-----ccCCceeeEeCcccccc
Confidence 37777775211 14566777777755555322210000 0111114566665 11235689999999999
Q ss_pred EEcCC-CCCCCcceEEEEECCEEEEEecccCCCccccEEEEEcCC-CcEEEccc
Q 007704 527 MSGEP-MKLSRGYLGAAVVKEAIYVIGGVKNGSEIVDTVERFKEG-QGWEEINS 578 (592)
Q Consensus 527 ~~v~~-lp~~R~~~s~~v~~~~Iyv~GG~~~~~~~~~~v~~Yd~~-~~W~~v~~ 578 (592)
.+-.- -..+|.+...+--.+++++--- -.+.+.+||++ .+.++++.
T Consensus 267 ~eypLPgs~arpys~rVD~~grVW~sea------~agai~rfdpeta~ftv~p~ 314 (353)
T COG4257 267 IEYPLPGSKARPYSMRVDRHGRVWLSEA------DAGAIGRFDPETARFTVLPI 314 (353)
T ss_pred eeeeCCCCCCCcceeeeccCCcEEeecc------ccCceeecCcccceEEEecC
Confidence 98642 2234544443444566666222 12568899998 88877654
No 209
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=30.98 E-value=2.4e+02 Score=22.39 Aligned_cols=51 Identities=16% Similarity=0.128 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHhhhhceeecc
Q 007704 261 CQSIINELIKEVAELKAFKTEQTLKMKELEQKLVDAEAEIQRLKEHCLMVQ 311 (592)
Q Consensus 261 ~~~~i~~l~~e~~~l~~~~~~~~~~~~~l~~~~~~~~rki~~l~e~~~~l~ 311 (592)
+-+.|.+|..++.-.++.+..+...+...+..+....+++..+.++...+.
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345566666666666666666666666666666666666666666554443
No 210
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=30.41 E-value=1.7e+02 Score=22.49 Aligned_cols=41 Identities=17% Similarity=0.280 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHhhhh
Q 007704 265 INELIKEVAELKAFKTEQTLKMKELEQKLVDAEAEIQRLKE 305 (592)
Q Consensus 265 i~~l~~e~~~l~~~~~~~~~~~~~l~~~~~~~~rki~~l~e 305 (592)
|++|..+..++.........+...+...+...++.++.+..
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~ 42 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEENVKDLLS 42 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555544443
No 211
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=29.32 E-value=8.6e+02 Score=27.38 Aligned_cols=206 Identities=18% Similarity=0.217 Sum_probs=0.0
Q ss_pred EEEeeCCCCCCcceEEEEECCCCeEEEC-CCCCCCCcceEEEEECCEEEEEecCCCCcccceEEEEeCCCCeEEEc----
Q 007704 361 YIFGGGDGNSWHNTVESYSPANDEWTSR-PSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRT---- 435 (592)
Q Consensus 361 yv~GG~~~~~~~~~v~~yd~~t~~W~~l-~~lp~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~v~~yD~~t~~W~~i---- 435 (592)
|+-||.+-...+-++--.|......+.+ |.-...-.+...-+-++.|+|+-| ....-+||-...+|.+.
T Consensus 182 ~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg------~aqakl~DRdG~~~~e~~KGD 255 (641)
T KOG0772|consen 182 FVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSG------SAQAKLLDRDGFEIVEFSKGD 255 (641)
T ss_pred eeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEec------CcceeEEccCCceeeeeeccc
Q ss_pred ---ccccCcccceEEEEE------CCEEEEEeccCCCCCCCeeEEEeCCCCeEEEe--ccCCCCCceeEEEEE--CCEEE
Q 007704 436 ---RSMLQKRFALAAAEL------NGVLYATGGYDGNEYMNSAERFDPREHYWTKI--ANMNRRRGCHSLAVL--NGKLY 502 (592)
Q Consensus 436 ---~~~p~~R~~~~a~~~------~g~IYV~GG~~~~~~~~~v~~yD~~t~~W~~i--~~~p~~R~~~s~v~~--~~~Ly 502 (592)
.+|......-+.... +...++..++++. -.+|-.+-...+-+-+ .++...|...+.|.+ +++++
T Consensus 256 QYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~Dgt---lRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~i 332 (641)
T KOG0772|consen 256 QYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGT---LRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLI 332 (641)
T ss_pred hhhhhhhccCCceeeeeccccccCcccceEEecCCCc---EEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchh
Q ss_pred EEecCCCCCCCCeEEEEeCCCCeEEE-----cCCCCCCCcceEEEEE--CCEEEEEecccCCCccccEEEEEcCC-----
Q 007704 503 ALGGFDGSAMVPSIEVYDPRLGSWMS-----GEPMKLSRGYLGAAVV--KEAIYVIGGVKNGSEIVDTVERFKEG----- 570 (592)
Q Consensus 503 v~GG~~~~~~~~~v~~yD~~t~~W~~-----v~~lp~~R~~~s~~v~--~~~Iyv~GG~~~~~~~~~~v~~Yd~~----- 570 (592)
..|-.++ +|.+++. ..|.. +..--.+....+++.+ ++.+++-=|.++. +.+||+.
T Consensus 333 Aagc~DG-----SIQ~W~~--~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~t------LKvWDLrq~kkp 399 (641)
T KOG0772|consen 333 AAGCLDG-----SIQIWDK--GSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDT------LKVWDLRQFKKP 399 (641)
T ss_pred hhcccCC-----ceeeeec--CCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCc------eeeeeccccccc
Q ss_pred -CcEEEccccCCCCccceE
Q 007704 571 -QGWEEINSRAIGKRCFMS 588 (592)
Q Consensus 571 -~~W~~v~~~p~~~r~~~s 588 (592)
..|+-++..-.+--|.+|
T Consensus 400 L~~~tgL~t~~~~tdc~FS 418 (641)
T KOG0772|consen 400 LNVRTGLPTPFPGTDCCFS 418 (641)
T ss_pred hhhhcCCCccCCCCccccC
No 212
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=29.32 E-value=1.9e+02 Score=25.11 Aligned_cols=46 Identities=17% Similarity=0.198 Sum_probs=36.0
Q ss_pred cccHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHhh
Q 007704 258 SSRCQSIINELIKEVAELKAFKTEQTLKMKELEQKLVDAEAEIQRL 303 (592)
Q Consensus 258 ~~~~~~~i~~l~~e~~~l~~~~~~~~~~~~~l~~~~~~~~rki~~l 303 (592)
..+.-+.+.+|.++++.++.....+.+++..+++++....+++..+
T Consensus 62 ~~~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 62 KTDKEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred eecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677888888888888888888888888888888887777654
No 213
>PRK01029 tolB translocation protein TolB; Provisional
Probab=29.20 E-value=7.8e+02 Score=26.81 Aligned_cols=60 Identities=12% Similarity=0.065 Sum_probs=36.4
Q ss_pred ceEEEEeCCCCeEEEcccccCcccceEEEEECC-EEEEEeccCCCCCCCeeEEEeCCCCeEEEec
Q 007704 420 SDVEMLDLDIGKWIRTRSMLQKRFALAAAELNG-VLYATGGYDGNEYMNSAERFDPREHYWTKIA 483 (592)
Q Consensus 420 ~~v~~yD~~t~~W~~i~~~p~~R~~~~a~~~~g-~IYV~GG~~~~~~~~~v~~yD~~t~~W~~i~ 483 (592)
.++++||+.+++.+.+...+..-..... .-++ .|++..... ....++.+|+.++..+.+.
T Consensus 351 ~~I~v~dl~~g~~~~Lt~~~~~~~~p~w-SpDG~~L~f~~~~~---g~~~L~~vdl~~g~~~~Lt 411 (428)
T PRK01029 351 RQICVYDLATGRDYQLTTSPENKESPSW-AIDSLHLVYSAGNS---NESELYLISLITKKTRKIV 411 (428)
T ss_pred cEEEEEECCCCCeEEccCCCCCccceEE-CCCCCEEEEEECCC---CCceEEEEECCCCCEEEee
Confidence 5799999999998877543221112221 1244 454443322 1257899999888887764
No 214
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=29.17 E-value=6.3e+02 Score=25.74 Aligned_cols=65 Identities=14% Similarity=0.177 Sum_probs=40.6
Q ss_pred CCEEEEEeeCCCCCCcceEEEEECCCCeEEECCCCCCCCcceEEEEE--CCEEEEEecCCCCcccceEEEEeCCCCeEEE
Q 007704 357 NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATI--DNKIFAIGGGNGLECFSDVEMLDLDIGKWIR 434 (592)
Q Consensus 357 ~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~lp~~r~~~~~~~~--~~~Iyv~GG~~~~~~~~~v~~yD~~t~~W~~ 434 (592)
.|.|+..||- ..+++.|.++++.+..=. ...-+-|+++.- +++| +-|+.++ ++-++|..|.+-.+
T Consensus 126 enSi~~AgGD------~~~y~~dlE~G~i~r~~r-GHtDYvH~vv~R~~~~qi-lsG~EDG-----tvRvWd~kt~k~v~ 192 (325)
T KOG0649|consen 126 ENSILFAGGD------GVIYQVDLEDGRIQREYR-GHTDYVHSVVGRNANGQI-LSGAEDG-----TVRVWDTKTQKHVS 192 (325)
T ss_pred CCcEEEecCC------eEEEEEEecCCEEEEEEc-CCcceeeeeeecccCcce-eecCCCc-----cEEEEeccccceeE
Confidence 7889999873 358899999998866411 112344555542 3344 4565553 56788888876544
No 215
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=28.97 E-value=6.2e+02 Score=25.64 Aligned_cols=181 Identities=12% Similarity=0.157 Sum_probs=96.6
Q ss_pred CCEEEEEeeCCCCCCcceEEEEECC----CCeEEECCCCCCCCcceEEEEECCEEEEEecCCCCcccceEEEEeCCCCe-
Q 007704 357 NGELYIFGGGDGNSWHNTVESYSPA----NDEWTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIGK- 431 (592)
Q Consensus 357 ~~~Iyv~GG~~~~~~~~~v~~yd~~----t~~W~~l~~lp~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~v~~yD~~t~~- 431 (592)
++++|+..+..+ ..+..|... ...|...=.+|.+-.+..-++++|.+|.-.+ ....+-.||+.+..
T Consensus 30 ~~r~~~~~~~~~----~~l~E~~~~~~~~~~~~~~~~~lp~~~~gTg~VVynGs~yynk~-----~t~~ivky~l~~~~~ 100 (249)
T KOG3545|consen 30 DDRIYVMNYFDG----LMLTEYTNLEDFKRGRKAEKYRLPYSWDGTGHVVYNGSLYYNKA-----GTRNIIKYDLETRTV 100 (249)
T ss_pred cCceEEeccccC----ceEEEeccHHHhhccCcceEEeCCCCccccceEEEcceEEeecc-----CCcceEEEEeeccee
Confidence 678888855443 345666542 3345444456777777778888888888753 23567889988743
Q ss_pred --EEEcccccC---------cccceEEEEECCEEEEEeccCCCCCCCeeEEEeCCC----CeEEEeccCCCCCceeEEEE
Q 007704 432 --WIRTRSMLQ---------KRFALAAAELNGVLYATGGYDGNEYMNSAERFDPRE----HYWTKIANMNRRRGCHSLAV 496 (592)
Q Consensus 432 --W~~i~~~p~---------~R~~~~a~~~~g~IYV~GG~~~~~~~~~v~~yD~~t----~~W~~i~~~p~~R~~~s~v~ 496 (592)
|..++.+.. +....-.++-.+-++++=-..+....--+-+.|+.+ .+|... .+ .+....+..
T Consensus 101 ~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~GLWviYat~~~~g~iv~skLdp~tl~~e~tW~T~--~~-k~~~~~aF~ 177 (249)
T KOG3545|consen 101 AGSAALPYAGYHNPSPYYWGGHSDIDLAVDENGLWVIYATPENAGTIVLSKLDPETLEVERTWNTT--LP-KRSAGNAFM 177 (249)
T ss_pred eeeeeccccccCCCcccccCCCccccceecccceeEEecccccCCcEEeeccCHHHhheeeeeccc--cC-CCCcCceEE
Confidence 334432211 111122333444455554333333222345667643 446322 22 222233445
Q ss_pred ECCEEEEEecCCCCCCCCeEEEEeCCCCeEEEcCCCCCCC--cceEEEEE---CCEEEEE
Q 007704 497 LNGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSR--GYLGAAVV---KEAIYVI 551 (592)
Q Consensus 497 ~~~~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~lp~~R--~~~s~~v~---~~~Iyv~ 551 (592)
+-|-||++-....... .--+.||+.+++=+.+. +|.+. ...++.-. +.++|++
T Consensus 178 iCGvLY~v~S~~~~~~-~i~yaydt~~~~~~~~~-ipf~N~y~~~~~idYNP~D~~LY~w 235 (249)
T KOG3545|consen 178 ICGVLYVVHSYNCTHT-QISYAYDTTTGTQERID-LPFPNPYSYATMIDYNPRDRRLYAW 235 (249)
T ss_pred EeeeeEEEeccccCCc-eEEEEEEcCCCceeccc-ccccchhhhhhccCCCcccceeeEe
Confidence 5667888866543321 12379999988775543 34443 33344333 4668875
No 216
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=28.91 E-value=5.2e+02 Score=24.70 Aligned_cols=66 Identities=18% Similarity=0.184 Sum_probs=37.8
Q ss_pred CCEEEEEeeCCCCCCcceEEEEECCCCeEEECCCCCCCCcceEEEEECCEEEEEecCCCCcccceEEEEeCCCCe
Q 007704 357 NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIGK 431 (592)
Q Consensus 357 ~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~lp~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~v~~yD~~t~~ 431 (592)
++++.|+-|..+ ..+..||.....-..++ ........-.-+|+.+++||..+. ..++.+||..+.+
T Consensus 71 g~~favi~g~~~----~~v~lyd~~~~~i~~~~---~~~~n~i~wsP~G~~l~~~g~~n~--~G~l~~wd~~~~~ 136 (194)
T PF08662_consen 71 GNEFAVIYGSMP----AKVTLYDVKGKKIFSFG---TQPRNTISWSPDGRFLVLAGFGNL--NGDLEFWDVRKKK 136 (194)
T ss_pred CCEEEEEEccCC----cccEEEcCcccEeEeec---CCCceEEEECCCCCEEEEEEccCC--CcEEEEEECCCCE
Confidence 556666655322 26888998644333332 222222222347888899886532 2578899998443
No 217
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=28.64 E-value=4.7e+02 Score=24.12 Aligned_cols=80 Identities=9% Similarity=-0.006 Sum_probs=47.8
Q ss_pred EEECCEEEEEecCCCCcccceEEEEeCCCCeE-EEcccccCccc----ceEEEE-ECCEEEEEeccCCCCCCCeeEEEe-
Q 007704 401 ATIDNKIFAIGGGNGLECFSDVEMLDLDIGKW-IRTRSMLQKRF----ALAAAE-LNGVLYATGGYDGNEYMNSAERFD- 473 (592)
Q Consensus 401 ~~~~~~Iyv~GG~~~~~~~~~v~~yD~~t~~W-~~i~~~p~~R~----~~~a~~-~~g~IYV~GG~~~~~~~~~v~~yD- 473 (592)
+.++|.+|-++.........-+..||..+.++ ..+ ++|.... .....+ .+++|.++-- ......-++|+.+
T Consensus 2 V~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~-~lP~~~~~~~~~~~L~~v~~~~L~~~~~-~~~~~~~~IWvm~~ 79 (164)
T PF07734_consen 2 VFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSL-PLPFCNDDDDDSVSLSVVRGDCLCVLYQ-CDETSKIEIWVMKK 79 (164)
T ss_pred EEECCEEEeeEEecCCCCceEEEEEeccccccCCEE-CCCCccCccCCEEEEEEecCCEEEEEEe-ccCCccEEEEEEee
Confidence 56788888887644333222688999999999 444 3333222 233323 3678877743 1222335778776
Q ss_pred --CCCCeEEEe
Q 007704 474 --PREHYWTKI 482 (592)
Q Consensus 474 --~~t~~W~~i 482 (592)
-...+|+++
T Consensus 80 ~~~~~~SWtK~ 90 (164)
T PF07734_consen 80 YGYGKESWTKL 90 (164)
T ss_pred eccCcceEEEE
Confidence 236789987
No 218
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=28.28 E-value=2.2e+02 Score=23.46 Aligned_cols=45 Identities=24% Similarity=0.273 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHhhhh
Q 007704 261 CQSIINELIKEVAELKAFKTEQTLKMKELEQKLVDAEAEIQRLKE 305 (592)
Q Consensus 261 ~~~~i~~l~~e~~~l~~~~~~~~~~~~~l~~~~~~~~rki~~l~e 305 (592)
-+++|.-|.-|++++..++..+.++...+.+......++.+.+++
T Consensus 16 AvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~ 60 (79)
T PRK15422 16 AIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKE 60 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 456677777778888777777777766666666666666666655
No 219
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=27.88 E-value=6.8e+02 Score=27.43 Aligned_cols=148 Identities=14% Similarity=0.020 Sum_probs=71.7
Q ss_pred ceEEEEeCCCCeEEEcccccCcccceEEEEECCEEEEEeccCCCCCCCeeEEEeCCCCeEEEeccCCCCCceeEEEEECC
Q 007704 420 SDVEMLDLDIGKWIRTRSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVLNG 499 (592)
Q Consensus 420 ~~v~~yD~~t~~W~~i~~~p~~R~~~~a~~~~g~IYV~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~~s~v~~~~ 499 (592)
..++++|+.++.=..+...+..-..++... +|+-++|-.... ...+++.+|+.+..=.++......-. +-.-.-+|
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g~~~~P~fsp-DG~~l~f~~~rd--g~~~iy~~dl~~~~~~~Lt~~~gi~~-~Ps~spdG 293 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNGNNGAPAFSP-DGSKLAFSSSRD--GSPDIYLMDLDGKNLPRLTNGFGINT-SPSWSPDG 293 (425)
T ss_pred ceEEEEeccCCccceeeccCCccCCccCCC-CCCEEEEEECCC--CCccEEEEcCCCCcceecccCCcccc-CccCCCCC
Confidence 567778887776555544332222222222 333333333221 34689999998877333322221111 12222244
Q ss_pred E-EEEEecCCCCCCCCeEEEEeCCCCeEEEcCCCCCCCcceEEEEECCEEEEEecccCCCccccEEEEEcCC-Cc-EEEc
Q 007704 500 K-LYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVVKEAIYVIGGVKNGSEIVDTVERFKEG-QG-WEEI 576 (592)
Q Consensus 500 ~-Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~lp~~R~~~s~~v~~~~Iyv~GG~~~~~~~~~~v~~Yd~~-~~-W~~v 576 (592)
+ |+..-...+ ...++.+|++...=+++..-..... +-...-+++.++|-+..++ . -++..+|+. +. |..+
T Consensus 294 ~~ivf~Sdr~G---~p~I~~~~~~g~~~~riT~~~~~~~-~p~~SpdG~~i~~~~~~~g-~--~~i~~~~~~~~~~~~~l 366 (425)
T COG0823 294 SKIVFTSDRGG---RPQIYLYDLEGSQVTRLTFSGGGNS-NPVWSPDGDKIVFESSSGG-Q--WDIDKNDLASGGKIRIL 366 (425)
T ss_pred CEEEEEeCCCC---CcceEEECCCCCceeEeeccCCCCc-CccCCCCCCEEEEEeccCC-c--eeeEEeccCCCCcEEEc
Confidence 4 444322222 3489999998876665532111111 1222224554444443321 2 568888876 44 8776
Q ss_pred cc
Q 007704 577 NS 578 (592)
Q Consensus 577 ~~ 578 (592)
..
T Consensus 367 t~ 368 (425)
T COG0823 367 TS 368 (425)
T ss_pred cc
Confidence 43
No 220
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=27.13 E-value=6.4e+02 Score=28.21 Aligned_cols=137 Identities=18% Similarity=0.187 Sum_probs=64.0
Q ss_pred CCEEEEEeeCCCCCCcceEEEEECCCCeEEE-CCCCCCCCcceEEEEECCEEEEEecCCCCcccceEEEEeCCCCeEEEc
Q 007704 357 NGELYIFGGGDGNSWHNTVESYSPANDEWTS-RPSLNGTKGSLAGATIDNKIFAIGGGNGLECFSDVEMLDLDIGKWIRT 435 (592)
Q Consensus 357 ~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~-l~~lp~~r~~~~~~~~~~~Iyv~GG~~~~~~~~~v~~yD~~t~~W~~i 435 (592)
++..+.-||.+ |.+.+||.....+.. +-....+.-..+-+-+...|.+.||+... ..+-.+|+.+++=...
T Consensus 312 d~~~lASGgnD-----N~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D---~~i~fwn~~~g~~i~~ 383 (484)
T KOG0305|consen 312 DGNQLASGGND-----NVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSAD---RCIKFWNTNTGARIDS 383 (484)
T ss_pred CCCeeccCCCc-----cceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcc---cEEEEEEcCCCcEecc
Confidence 34444444544 557777773322211 11111112222333346778999986543 3566677776643221
Q ss_pred ccccCcccceEEEEE---CCEEEEEeccCCCCCCCeeEEEeCCCCeEEEeccCC--CCCceeEEEEECCEEEEEecCCCC
Q 007704 436 RSMLQKRFALAAAEL---NGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMN--RRRGCHSLAVLNGKLYALGGFDGS 510 (592)
Q Consensus 436 ~~~p~~R~~~~a~~~---~g~IYV~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p--~~R~~~s~v~~~~~Lyv~GG~~~~ 510 (592)
.- ....-+...+ .+.|...-|+..+ .+.+|+..+. ..+..+. ..|-.|-+..-++.-++.|+.+..
T Consensus 384 --vd-tgsQVcsL~Wsk~~kEi~sthG~s~n----~i~lw~~ps~--~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DET 454 (484)
T KOG0305|consen 384 --VD-TGSQVCSLIWSKKYKELLSTHGYSEN----QITLWKYPSM--KLVAELLGHTSRVLYLALSPDGETIVTGAADET 454 (484)
T ss_pred --cc-cCCceeeEEEcCCCCEEEEecCCCCC----cEEEEecccc--ceeeeecCCcceeEEEEECCCCCEEEEecccCc
Confidence 11 1122222222 4568887787654 4555543331 1122221 234334444446666777765543
No 221
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=27.05 E-value=7.5e+02 Score=25.91 Aligned_cols=158 Identities=18% Similarity=0.188 Sum_probs=0.0
Q ss_pred CCCCCcceEEEEE--CCEEEEEecCCCCcccceEEEEeCCCCeEEEcccccCcc--cceEEEEECCEEEEEeccCCCCCC
Q 007704 391 LNGTKGSLAGATI--DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKR--FALAAAELNGVLYATGGYDGNEYM 466 (592)
Q Consensus 391 lp~~r~~~~~~~~--~~~Iyv~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R--~~~~a~~~~g~IYV~GG~~~~~~~ 466 (592)
.|.|-..|.++.. ...+.+|+-..+ .-+.+||+.+++=...-..+..| ++|++..-+|.....-=.+.....
T Consensus 1 ~~lP~RgH~~a~~p~~~~avafaRRPG----~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~ 76 (305)
T PF07433_consen 1 IPLPARGHGVAAHPTRPEAVAFARRPG----TFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGR 76 (305)
T ss_pred CCCCccccceeeCCCCCeEEEEEeCCC----cEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCc
Q ss_pred CeeEEEeCCCCeEEEeccCC-CCCceeEEEEE-CC--EEEEEecCCCC-----------CCCCeEEEEeCCCCeEEEcCC
Q 007704 467 NSAERFDPREHYWTKIANMN-RRRGCHSLAVL-NG--KLYALGGFDGS-----------AMVPSIEVYDPRLGSWMSGEP 531 (592)
Q Consensus 467 ~~v~~yD~~t~~W~~i~~~p-~~R~~~s~v~~-~~--~Lyv~GG~~~~-----------~~~~~v~~yD~~t~~W~~v~~ 531 (592)
--+-+||.. ....++...+ .+..-|-+..+ ++ -++.-||.... .+-.++...|..+..-...-.
T Consensus 77 G~IgVyd~~-~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~ 155 (305)
T PF07433_consen 77 GVIGVYDAA-RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVE 155 (305)
T ss_pred EEEEEEECc-CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeee
Q ss_pred CCCCCcceEE---EEECCEEEEEec
Q 007704 532 MKLSRGYLGA---AVVKEAIYVIGG 553 (592)
Q Consensus 532 lp~~R~~~s~---~v~~~~Iyv~GG 553 (592)
+|......+. ++-.+-+.++|.
T Consensus 156 Lp~~~~~lSiRHLa~~~~G~V~~a~ 180 (305)
T PF07433_consen 156 LPPDLHQLSIRHLAVDGDGTVAFAM 180 (305)
T ss_pred cCccccccceeeEEecCCCcEEEEE
No 222
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=26.50 E-value=21 Score=36.85 Aligned_cols=54 Identities=22% Similarity=0.230 Sum_probs=45.0
Q ss_pred CCCceEEE--EEeeeecCCCCCcchhHHHhcccCCCCCCCCCCHHHHHHHHHhhccCCC
Q 007704 95 SYPAQVQI--RVRMQCQPLNEEKFKPIIAANYYTPHHFWFELDHSQASKLIALLSSMAI 151 (592)
Q Consensus 95 ~~paqv~~--~~~~~~~pl~e~~~~~~i~~n~~~~~~f~~~l~~~q~~~l~~lf~~~~~ 151 (592)
+=||||.. .+....-|||-+.=+.-|++|+ .-|.|+||.++..+|-.|+.....
T Consensus 213 ~t~AQv~L~W~i~~gv~~Ipks~~~~ri~eN~---~~~~f~Ls~ed~~~i~~l~~~~~~ 268 (280)
T COG0656 213 KTPAQVALRWHIQRGVIVIPKSTTPERIRENL---AAFDFELSEEDMAAIDALDRGYGR 268 (280)
T ss_pred CCHHHHHHHHHHhCCcEEecCCCCHHHHHHHH---hhhcCCCCHHHHHHHHhhccccCc
Confidence 35999855 5555578999999999999985 678889999999999999998744
No 223
>PRK00736 hypothetical protein; Provisional
Probab=25.78 E-value=3e+02 Score=21.87 Aligned_cols=45 Identities=20% Similarity=0.173 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHhhhhce
Q 007704 263 SIINELIKEVAELKAFKTEQTLKMKELEQKLVDAEAEIQRLKEHC 307 (592)
Q Consensus 263 ~~i~~l~~e~~~l~~~~~~~~~~~~~l~~~~~~~~rki~~l~e~~ 307 (592)
+.|.+|..++.-.++.+.++.+.+...++.+....+++..+.++.
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl 49 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERF 49 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667666666666666666666666666666666666665543
No 224
>PRK02888 nitrous-oxide reductase; Validated
Probab=25.61 E-value=1.1e+03 Score=27.36 Aligned_cols=51 Identities=14% Similarity=0.100 Sum_probs=36.2
Q ss_pred CeEEEEeCCC---CeEEEcCCCCCCCcceEEEEE-C-CEEEEEecccCCCccccEEEEEcCC
Q 007704 514 PSIEVYDPRL---GSWMSGEPMKLSRGYLGAAVV-K-EAIYVIGGVKNGSEIVDTVERFKEG 570 (592)
Q Consensus 514 ~~v~~yD~~t---~~W~~v~~lp~~R~~~s~~v~-~-~~Iyv~GG~~~~~~~~~~v~~Yd~~ 570 (592)
+.|-++|..+ ..+..+..+|.++..|.+.+- + ..+|+.|+.+ ++|-++|..
T Consensus 296 n~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS------~tVSVIDv~ 351 (635)
T PRK02888 296 SKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLS------PTVTVIDVR 351 (635)
T ss_pred CEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCC------CcEEEEECh
Confidence 4578888876 235666677888888988876 3 4577777764 558888876
No 225
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=25.42 E-value=1.2e+03 Score=27.65 Aligned_cols=140 Identities=12% Similarity=0.214 Sum_probs=72.9
Q ss_pred eEEEEEC--CEEEEEecCCCCcccceEEEEeCCCCeEEEcccccCcccceEEEEECCEEEEEeccCCCCCCCeeEEEeCC
Q 007704 398 LAGATID--NKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAERFDPR 475 (592)
Q Consensus 398 ~~~~~~~--~~Iyv~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~~~a~~~~g~IYV~GG~~~~~~~~~v~~yD~~ 475 (592)
-..++++ |.-+.+|+.. +..+.+|+-.+.+...-.+-...|....+..-+|.+.+.|+.+++ +-+||..
T Consensus 310 I~t~~~N~tGDWiA~g~~k----lgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgK-----VKvWn~~ 380 (893)
T KOG0291|consen 310 ILTVSFNSTGDWIAFGCSK----LGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGK-----VKVWNTQ 380 (893)
T ss_pred eeEEEecccCCEEEEcCCc----cceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCc-----EEEEecc
Confidence 3445555 7777887633 446777765555554333322333333333348889999987753 5566665
Q ss_pred CCeEEEeccCCCCCceeEEEEE--CCEEEEEecCCCCCCCCeEEEEeCCCCe-EEEcCCCCCCCcceEEEEEC--CEEEE
Q 007704 476 EHYWTKIANMNRRRGCHSLAVL--NGKLYALGGFDGSAMVPSIEVYDPRLGS-WMSGEPMKLSRGYLGAAVVK--EAIYV 550 (592)
Q Consensus 476 t~~W~~i~~~p~~R~~~s~v~~--~~~Lyv~GG~~~~~~~~~v~~yD~~t~~-W~~v~~lp~~R~~~s~~v~~--~~Iyv 550 (592)
.+...- .....-++++++.+ .++.++..-.+| +|-.+|....+ ++.. ..|.| ..++++.++ +.|.+
T Consensus 381 SgfC~v--TFteHts~Vt~v~f~~~g~~llssSLDG-----tVRAwDlkRYrNfRTf-t~P~p-~QfscvavD~sGelV~ 451 (893)
T KOG0291|consen 381 SGFCFV--TFTEHTSGVTAVQFTARGNVLLSSSLDG-----TVRAWDLKRYRNFRTF-TSPEP-IQFSCVAVDPSGELVC 451 (893)
T ss_pred CceEEE--EeccCCCceEEEEEEecCCEEEEeecCC-----eEEeeeecccceeeee-cCCCc-eeeeEEEEcCCCCEEE
Confidence 543221 11122233444433 555555544444 35566654432 2222 22333 345555555 78888
Q ss_pred Eeccc
Q 007704 551 IGGVK 555 (592)
Q Consensus 551 ~GG~~ 555 (592)
.|+.+
T Consensus 452 AG~~d 456 (893)
T KOG0291|consen 452 AGAQD 456 (893)
T ss_pred eeccc
Confidence 88864
No 226
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=24.79 E-value=5.5e+02 Score=23.64 Aligned_cols=81 Identities=20% Similarity=0.110 Sum_probs=48.1
Q ss_pred EEECCEEEEEeccCCCCCCCeeEEEeCCCCeEEEeccCCCCC----ceeEEEEE-CCEEEEEecCCCCCCCCeEEEEeC-
Q 007704 448 AELNGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRR----GCHSLAVL-NGKLYALGGFDGSAMVPSIEVYDP- 521 (592)
Q Consensus 448 ~~~~g~IYV~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R----~~~s~v~~-~~~Lyv~GG~~~~~~~~~v~~yD~- 521 (592)
+.++|.+|=++.........-+..||+.+.+....-++|... ....+.++ +++|-++--.. ....-+||+.+-
T Consensus 2 V~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~~-~~~~~~IWvm~~~ 80 (164)
T PF07734_consen 2 VFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQCD-ETSKIEIWVMKKY 80 (164)
T ss_pred EEECCEEEeeEEecCCCCceEEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEecc-CCccEEEEEEeee
Confidence 467888887776544433336899999999994333333222 23333233 77887774321 122357888762
Q ss_pred --CCCeEEEc
Q 007704 522 --RLGSWMSG 529 (592)
Q Consensus 522 --~t~~W~~v 529 (592)
...+|+++
T Consensus 81 ~~~~~SWtK~ 90 (164)
T PF07734_consen 81 GYGKESWTKL 90 (164)
T ss_pred ccCcceEEEE
Confidence 36789885
No 227
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=24.49 E-value=9.5e+02 Score=26.26 Aligned_cols=132 Identities=16% Similarity=0.232 Sum_probs=64.5
Q ss_pred ECCEEEEEeeCCCCCCcceEEEEECCCCeEEEC-CCCCCCCcceEEE-EECCEEEEEecCCCCcccceEEEEeCCCCeEE
Q 007704 356 LNGELYIFGGGDGNSWHNTVESYSPANDEWTSR-PSLNGTKGSLAGA-TIDNKIFAIGGGNGLECFSDVEMLDLDIGKWI 433 (592)
Q Consensus 356 ~~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l-~~lp~~r~~~~~~-~~~~~Iyv~GG~~~~~~~~~v~~yD~~t~~W~ 433 (592)
.+|.+..-||.+... -++|.+++.-... .- ..+.-+++. .-+|.-.+.||.+ +.+-++|+...+
T Consensus 313 ~DGSL~~tGGlD~~~-----RvWDlRtgr~im~L~g--H~k~I~~V~fsPNGy~lATgs~D-----nt~kVWDLR~r~-- 378 (459)
T KOG0272|consen 313 PDGSLAATGGLDSLG-----RVWDLRTGRCIMFLAG--HIKEILSVAFSPNGYHLATGSSD-----NTCKVWDLRMRS-- 378 (459)
T ss_pred CCCceeeccCccchh-----heeecccCcEEEEecc--cccceeeEeECCCceEEeecCCC-----CcEEEeeecccc--
Confidence 389999999977422 3456665543221 11 111122222 2277788888765 345566664332
Q ss_pred EcccccCcccceEEEE---ECCEEEEEeccCCCCCCCeeEEEeCCCCeEEEeccCCC--CCceeEEEEECCEEEEEecCC
Q 007704 434 RTRSMLQKRFALAAAE---LNGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNR--RRGCHSLAVLNGKLYALGGFD 508 (592)
Q Consensus 434 ~i~~~p~~R~~~~a~~---~~g~IYV~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~--~R~~~s~v~~~~~Lyv~GG~~ 508 (592)
.+..||.-+.--+-+. -.|++.+.+|++ +.+-+|. +..|+.+..+-- .+-...-...++..++.++++
T Consensus 379 ~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD-----~t~kiWs--~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~D 451 (459)
T KOG0272|consen 379 ELYTIPAHSNLVSQVKYSPQEGYFLVTASYD-----NTVKIWS--TRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFD 451 (459)
T ss_pred cceecccccchhhheEecccCCeEEEEcccC-----cceeeec--CCCcccchhhcCCccceEEEEeccCCceEEEeccC
Confidence 2333332221111111 267888888876 3444553 345776665531 121111122255556666654
No 228
>PRK04325 hypothetical protein; Provisional
Probab=24.02 E-value=3.2e+02 Score=22.15 Aligned_cols=47 Identities=17% Similarity=0.120 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHhhhhce
Q 007704 261 CQSIINELIKEVAELKAFKTEQTLKMKELEQKLVDAEAEIQRLKEHC 307 (592)
Q Consensus 261 ~~~~i~~l~~e~~~l~~~~~~~~~~~~~l~~~~~~~~rki~~l~e~~ 307 (592)
+-+.|.+|..++.-.++.+..+.+.+...++.+....+++..+.++.
T Consensus 7 ~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl 53 (74)
T PRK04325 7 MEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQM 53 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666555555555555555555554433
No 229
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=23.96 E-value=1.2e+03 Score=27.24 Aligned_cols=49 Identities=22% Similarity=0.332 Sum_probs=29.4
Q ss_pred CCEEEEEeeCCCCCCcceEEEEECCCCeEEECCCCCCCC--cceEEEEECCEEEEEecCC
Q 007704 357 NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLNGTK--GSLAGATIDNKIFAIGGGN 414 (592)
Q Consensus 357 ~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~lp~~r--~~~~~~~~~~~Iyv~GG~~ 414 (592)
+..+++..| +.++.||+..+.--+ ++.... ....+-+.+|+.|.-||.+
T Consensus 24 GsqL~lAAg-------~rlliyD~ndG~llq--tLKgHKDtVycVAys~dGkrFASG~aD 74 (1081)
T KOG1538|consen 24 GTQLILAAG-------SRLLVYDTSDGTLLQ--PLKGHKDTVYCVAYAKDGKRFASGSAD 74 (1081)
T ss_pred CceEEEecC-------CEEEEEeCCCccccc--ccccccceEEEEEEccCCceeccCCCc
Confidence 556777777 678999988764322 222221 1122223489999998854
No 230
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=23.94 E-value=8.3e+02 Score=30.55 Aligned_cols=94 Identities=14% Similarity=0.214 Sum_probs=48.8
Q ss_pred CCeeEEEeCCCC--eEEEeccCCCCCceeEEEEECCEEEEEecCCCCCCCCeEEEEeCCCC----eEEEcCCCCCCCcce
Q 007704 466 MNSAERFDPREH--YWTKIANMNRRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLG----SWMSGEPMKLSRGYL 539 (592)
Q Consensus 466 ~~~v~~yD~~t~--~W~~i~~~p~~R~~~s~v~~~~~Lyv~GG~~~~~~~~~v~~yD~~t~----~W~~v~~lp~~R~~~ 539 (592)
...+..+|+... .|+.-.++..+-....++.-.+..+++|-..|. +..||.+-+ +|..-...|..+.
T Consensus 1172 ~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~-----l~lWDLRF~~~i~sw~~P~~~~i~~v-- 1244 (1431)
T KOG1240|consen 1172 LSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQ-----LVLWDLRFRVPILSWEHPARAPIRHV-- 1244 (1431)
T ss_pred ccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCce-----EEEEEeecCceeecccCcccCCcceE--
Confidence 345677887654 476544443333222222225667888765443 666776654 5654333222222
Q ss_pred EEEEE--CCEEEEEecccCCCccccEEEEEcCC
Q 007704 540 GAAVV--KEAIYVIGGVKNGSEIVDTVERFKEG 570 (592)
Q Consensus 540 s~~v~--~~~Iyv~GG~~~~~~~~~~v~~Yd~~ 570 (592)
.++.+ .+...|++|.... +.|..|+.+
T Consensus 1245 ~~~~~~~~~S~~vs~~~~~~----nevs~wn~~ 1273 (1431)
T KOG1240|consen 1245 WLCPTYPQESVSVSAGSSSN----NEVSTWNME 1273 (1431)
T ss_pred EeeccCCCCceEEEecccCC----Cceeeeecc
Confidence 22333 3477777876432 556666654
No 231
>KOG1901 consensus Uncharacterized high-glucose-regulated protein [General function prediction only]
Probab=23.67 E-value=1.4e+02 Score=33.15 Aligned_cols=92 Identities=21% Similarity=0.306 Sum_probs=70.1
Q ss_pred CCCCeEEEEe--cCCCeEeeEEEeccCCCccccCCCCCCCCCCCCCCceEEEEEeeeecCCCCCcchhHHHhcccCCC--
Q 007704 53 DPGLPLFLFN--YTDRKLHGIFEAASPGMMNINPYGWTDGSERTSYPAQVQIRVRMQCQPLNEEKFKPIIAANYYTPH-- 128 (592)
Q Consensus 53 ~~g~~lfl~~--~~~~~l~g~~~a~s~g~~~~~~~a~~~~~~~~~~paqv~~~~~~~~~pl~e~~~~~~i~~n~~~~~-- 128 (592)
+.+-|+|||= =...+..||-|-+++=.+|-+=.-|..-+-.+.|| ||..|+++ +|-++||++|.+|= +++
T Consensus 342 ~~~cPvfLfFSVNaSGqFCGvAEMvgPVdfn~~~~~WqQDKW~G~Fp--VKWhiVKD---VPNs~lrHI~LeNN-eNKPV 415 (487)
T KOG1901|consen 342 SGKCPVFLFFSVNASGQFCGVAEMVGPVDFNKDMEYWQQDKWSGSFP--VKWHIVKD---VPNSQLRHIILENN-ENKPV 415 (487)
T ss_pred cCCCCceEEEEEcCCccccceeeeccceecccccchhhhcccceecc--eeeEEEee---CCccceeEEEeecC-CCCCc
Confidence 3889999982 24678999999999999999988898223446888 56677665 57899999999873 332
Q ss_pred ---CCCCCCCHHHHHHHHHhhccCC
Q 007704 129 ---HFWFELDHSQASKLIALLSSMA 150 (592)
Q Consensus 129 ---~f~~~l~~~q~~~l~~lf~~~~ 150 (592)
.=..|.-..|..+.+.+|+.-+
T Consensus 416 TnSRDTQEV~leqGievlkIfk~y~ 440 (487)
T KOG1901|consen 416 TNSRDTQEVPLEQGIEVLKIFKSYA 440 (487)
T ss_pred ccccccceecHHHHHHHHHHHHhhc
Confidence 2347888899999999998643
No 232
>PRK04406 hypothetical protein; Provisional
Probab=23.56 E-value=2.1e+02 Score=23.27 Aligned_cols=45 Identities=11% Similarity=0.079 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHhhhh
Q 007704 261 CQSIINELIKEVAELKAFKTEQTLKMKELEQKLVDAEAEIQRLKE 305 (592)
Q Consensus 261 ~~~~i~~l~~e~~~l~~~~~~~~~~~~~l~~~~~~~~rki~~l~e 305 (592)
+-+.|.+|..++.-.++.+..+++.+...++.+....+++..+.+
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~ 53 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVG 53 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555444555555554444
No 233
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=23.54 E-value=1.2e+03 Score=27.14 Aligned_cols=29 Identities=24% Similarity=0.448 Sum_probs=16.9
Q ss_pred CCEEEEEeeCCCCCCcceEEEEECCCCeEEECCC
Q 007704 357 NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPS 390 (592)
Q Consensus 357 ~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~ 390 (592)
.+...+-||.++ .+-+|+...+.|.....
T Consensus 24 ~~~~i~s~sRd~-----t~~vw~~~~~~~l~~~~ 52 (745)
T KOG0301|consen 24 DGVCIISGSRDG-----TVKVWAKKGKQYLETHA 52 (745)
T ss_pred CCeEEeecCCCC-----ceeeeeccCccccccee
Confidence 444455555553 35677777788866433
No 234
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.51 E-value=9.6e+02 Score=25.95 Aligned_cols=146 Identities=14% Similarity=0.112 Sum_probs=68.9
Q ss_pred CEEEEEeeCCCCCCcceEEEEECCC--CeEEECCCCC------CCCcceEEEEEC---CEEEEEecCCCCcccceEEEEe
Q 007704 358 GELYIFGGGDGNSWHNTVESYSPAN--DEWTSRPSLN------GTKGSLAGATID---NKIFAIGGGNGLECFSDVEMLD 426 (592)
Q Consensus 358 ~~Iyv~GG~~~~~~~~~v~~yd~~t--~~W~~l~~lp------~~r~~~~~~~~~---~~Iyv~GG~~~~~~~~~v~~yD 426 (592)
..|+.+||... .+.+..||... ..|+.-...+ .|.....+..+. ..-|+.+ ..+..+-.||
T Consensus 161 p~Iva~GGke~---~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~-----T~~hqvR~YD 232 (412)
T KOG3881|consen 161 PYIVATGGKEN---INELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATI-----TRYHQVRLYD 232 (412)
T ss_pred CceEecCchhc---ccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEE-----ecceeEEEec
Confidence 45778888543 35556666554 4575432111 111111222222 2233332 2356788999
Q ss_pred CCCCeEEEcccccC---cccceEEEEECCEEEEEeccCCCCCCCeeEEEeCCCCeEEEeccCCCCCceeEEEEE-CCEEE
Q 007704 427 LDIGKWIRTRSMLQ---KRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL-NGKLY 502 (592)
Q Consensus 427 ~~t~~W~~i~~~p~---~R~~~~a~~~~g~IYV~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~~s~v~~-~~~Ly 502 (592)
+..++ +++..... +-...+.+ .+++..++|- +...+..||..++.---..--....+.-++..+ +..++
T Consensus 233 t~~qR-RPV~~fd~~E~~is~~~l~-p~gn~Iy~gn-----~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~l 305 (412)
T KOG3881|consen 233 TRHQR-RPVAQFDFLENPISSTGLT-PSGNFIYTGN-----TKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVL 305 (412)
T ss_pred CcccC-cceeEeccccCcceeeeec-CCCcEEEEec-----ccchhheecccCceeeccccCCccCCcceEEEcCCCceE
Confidence 98653 23333222 22222222 2444444443 234677899888754322111111111123344 44688
Q ss_pred EEecCCCCCCCCeEEEEeCCC
Q 007704 503 ALGGFDGSAMVPSIEVYDPRL 523 (592)
Q Consensus 503 v~GG~~~~~~~~~v~~yD~~t 523 (592)
..+|.+. -+-+||..+
T Consensus 306 as~GLDR-----yvRIhD~kt 321 (412)
T KOG3881|consen 306 ASCGLDR-----YVRIHDIKT 321 (412)
T ss_pred Eeeccce-----eEEEeeccc
Confidence 8888764 255777766
No 235
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=23.08 E-value=3.5e+02 Score=21.50 Aligned_cols=45 Identities=7% Similarity=0.152 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHhhhh
Q 007704 261 CQSIINELIKEVAELKAFKTEQTLKMKELEQKLVDAEAEIQRLKE 305 (592)
Q Consensus 261 ~~~~i~~l~~e~~~l~~~~~~~~~~~~~l~~~~~~~~rki~~l~e 305 (592)
+.+.+.++..+++++++....+++.....++.......++..+++
T Consensus 4 i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~ 48 (71)
T PF10779_consen 4 IKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKS 48 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555554444444444444444444444443
No 236
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=22.74 E-value=6e+02 Score=29.64 Aligned_cols=60 Identities=22% Similarity=0.320 Sum_probs=31.7
Q ss_pred CCEEEEEecCCCCcccceEEEEeCCCCeEEEcccccCcc--cceEEEEECCEEEEEeccCCCCCCCeeEEEeCC
Q 007704 404 DNKIFAIGGGNGLECFSDVEMLDLDIGKWIRTRSMLQKR--FALAAAELNGVLYATGGYDGNEYMNSAERFDPR 475 (592)
Q Consensus 404 ~~~Iyv~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R--~~~~a~~~~g~IYV~GG~~~~~~~~~v~~yD~~ 475 (592)
.|+-.+-|+.+ .-+-+||..+++- +..+..-. ...-....+|.+++.||.+ +++-.+|..
T Consensus 588 ~Gr~LaSg~ed-----~~I~iWDl~~~~~--v~~l~~Ht~ti~SlsFS~dg~vLasgg~D-----nsV~lWD~~ 649 (707)
T KOG0263|consen 588 CGRYLASGDED-----GLIKIWDLANGSL--VKQLKGHTGTIYSLSFSRDGNVLASGGAD-----NSVRLWDLT 649 (707)
T ss_pred CCceEeecccC-----CcEEEEEcCCCcc--hhhhhcccCceeEEEEecCCCEEEecCCC-----CeEEEEEch
Confidence 55555555543 3466777776532 21111111 1111223588999999876 556666654
No 237
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=22.64 E-value=17 Score=37.76 Aligned_cols=51 Identities=25% Similarity=0.284 Sum_probs=40.7
Q ss_pred CCCceE--EEEEeeeecCCCCCcchhHHHhcccCCCCCCCCCCHHHHHHHHHhhcc
Q 007704 95 SYPAQV--QIRVRMQCQPLNEEKFKPIIAANYYTPHHFWFELDHSQASKLIALLSS 148 (592)
Q Consensus 95 ~~paqv--~~~~~~~~~pl~e~~~~~~i~~n~~~~~~f~~~l~~~q~~~l~~lf~~ 148 (592)
+=|||| |+.++.-.-+||-+.=..-|++|+. -|.|+||.++..+|-++=..
T Consensus 234 kt~aQIlLrw~~q~g~~vipKS~~~~Ri~eN~~---vfdf~Lt~ed~~~i~~~~~~ 286 (300)
T KOG1577|consen 234 KTPAQILLRWALQRGVSVIPKSSNPERIKENFK---VFDFELTEEDMKKLDSLNSN 286 (300)
T ss_pred CCHHHHHHHHHHhCCcEEEeccCCHHHHHHHHh---hccccCCHHHHHHHhhcccc
Confidence 448887 5566777889999888889999963 79999999999998855443
No 238
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=22.56 E-value=2.8e+02 Score=22.45 Aligned_cols=34 Identities=26% Similarity=0.166 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHH
Q 007704 261 CQSIINELIKEVAELKAFKTEQTLKMKELEQKLV 294 (592)
Q Consensus 261 ~~~~i~~l~~e~~~l~~~~~~~~~~~~~l~~~~~ 294 (592)
.+++|..|..|++++..++..+..+...|.....
T Consensus 16 aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~ 49 (72)
T PF06005_consen 16 AVETIALLQMENEELKEKNNELKEENEELKEENE 49 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4566666666666666665554444444443333
No 239
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=22.47 E-value=5.1e+02 Score=25.81 Aligned_cols=102 Identities=14% Similarity=0.103 Sum_probs=59.9
Q ss_pred cceEEEEECCEEEEEeccCCCCCCCeeEEEeCCCCeEEEeccCC-CCCceeEEEEECCEEEEEecCCCCCCCCeEEEEeC
Q 007704 443 FALAAAELNGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMN-RRRGCHSLAVLNGKLYALGGFDGSAMVPSIEVYDP 521 (592)
Q Consensus 443 ~~~~a~~~~g~IYV~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p-~~R~~~s~v~~~~~Lyv~GG~~~~~~~~~v~~yD~ 521 (592)
+.......+|+||.--|.-+ .+.+.++|+.+++=..-.+++ ..-++-+.+.+++.+|..-=.++ --+.||.
T Consensus 47 fTQGL~~~~g~i~esTG~yg---~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~eg-----vaf~~d~ 118 (262)
T COG3823 47 FTQGLEYLDGHILESTGLYG---FSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEG-----VAFKYDA 118 (262)
T ss_pred hhcceeeeCCEEEEeccccc---cceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccc-----eeEEECh
Confidence 34445567888888777543 367899999976633323333 45566778888999998732211 1345554
Q ss_pred CCCeEEEcCCCCCCCcceEEEEECCEEEEEecc
Q 007704 522 RLGSWMSGEPMKLSRGYLGAAVVKEAIYVIGGV 554 (592)
Q Consensus 522 ~t~~W~~v~~lp~~R~~~s~~v~~~~Iyv~GG~ 554 (592)
. +...++..+.+..+.+.+.-+..+++--|.
T Consensus 119 ~--t~~~lg~~~y~GeGWgLt~d~~~LimsdGs 149 (262)
T COG3823 119 D--TLEELGRFSYEGEGWGLTSDDKNLIMSDGS 149 (262)
T ss_pred H--HhhhhcccccCCcceeeecCCcceEeeCCc
Confidence 3 344455555555555555555555554443
No 240
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=22.41 E-value=4.5e+02 Score=29.81 Aligned_cols=47 Identities=23% Similarity=0.436 Sum_probs=28.5
Q ss_pred ccHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHhhhh
Q 007704 259 SRCQSIINELIKEVAELKAFKTEQTLKMKELEQKLVDAEAEIQRLKE 305 (592)
Q Consensus 259 ~~~~~~i~~l~~e~~~l~~~~~~~~~~~~~l~~~~~~~~rki~~l~e 305 (592)
.++...|+++..+++++.+.+...+.+...|+...+..++....+.+
T Consensus 103 qel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~ 149 (907)
T KOG2264|consen 103 QELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRE 149 (907)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHh
Confidence 34555566666666666666655556666666666666665555554
No 241
>PRK00846 hypothetical protein; Provisional
Probab=22.33 E-value=3.1e+02 Score=22.55 Aligned_cols=53 Identities=15% Similarity=0.040 Sum_probs=35.8
Q ss_pred ccHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHhhhhceeecc
Q 007704 259 SRCQSIINELIKEVAELKAFKTEQTLKMKELEQKLVDAEAEIQRLKEHCLMVQ 311 (592)
Q Consensus 259 ~~~~~~i~~l~~e~~~l~~~~~~~~~~~~~l~~~~~~~~rki~~l~e~~~~l~ 311 (592)
.++-+.|.+|..++.-.++.+.++++.+...+.......+++..+.++...+.
T Consensus 9 ~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 9 QALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44566777777777777777777777666677777777777776666554443
No 242
>cd00225 API3 Ascaris pepsin inhibitor-3 (API3); protein inhibitor that reversibly inhibits aspartic proteinase cathepsin E, and gastric enzymes pepsin and gastricsin.
Probab=21.94 E-value=6.5e+02 Score=23.42 Aligned_cols=10 Identities=20% Similarity=0.431 Sum_probs=5.8
Q ss_pred EEEECCEEEE
Q 007704 400 GATIDNKIFA 409 (592)
Q Consensus 400 ~~~~~~~Iyv 409 (592)
+++.||+||+
T Consensus 106 C~VqnNklYv 115 (159)
T cd00225 106 CMVQNNKVYV 115 (159)
T ss_pred eEEECCEEEE
Confidence 3445666666
No 243
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=21.85 E-value=7.5e+02 Score=24.09 Aligned_cols=73 Identities=8% Similarity=0.157 Sum_probs=43.1
Q ss_pred cccceEEEEeCCCCeEEEcccccC-cccceE-EEEE-CCE-EEEEeccCCC-CCCCeeEEEeCCCCeEEEeccCCCCC
Q 007704 417 ECFSDVEMLDLDIGKWIRTRSMLQ-KRFALA-AAEL-NGV-LYATGGYDGN-EYMNSAERFDPREHYWTKIANMNRRR 489 (592)
Q Consensus 417 ~~~~~v~~yD~~t~~W~~i~~~p~-~R~~~~-a~~~-~g~-IYV~GG~~~~-~~~~~v~~yD~~t~~W~~i~~~p~~R 489 (592)
....++|++|..++.|..+.--+. ..+.+- +..+ +.. ++++|...+. .--..+++|++.++.=+.+-+...-.
T Consensus 85 EgiGkIYIkn~~~~~~~~L~i~~~~~k~sPK~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~~~ly~~~dkk 162 (200)
T PF15525_consen 85 EGIGKIYIKNLNNNNWWSLQIDQNEEKYSPKYIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNLTELYEWKDKK 162 (200)
T ss_pred ccceeEEEEecCCCceEEEEecCcccccCCceeEEecCCcEEEEEccccceEccCCeEEEEEccCCceeEeeeccccc
Confidence 356688999998888875522111 122222 2233 334 4555533222 22357999999999988887765543
No 244
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=21.83 E-value=9.9e+02 Score=25.50 Aligned_cols=65 Identities=14% Similarity=0.126 Sum_probs=40.6
Q ss_pred CCEEEEE--ecCCC--CCCCCeEEEEeCCCCeEEEcCCCCCCCcceEEEEEC--C-EEEEEecccCCCccccEEEEEcCC
Q 007704 498 NGKLYAL--GGFDG--SAMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVVK--E-AIYVIGGVKNGSEIVDTVERFKEG 570 (592)
Q Consensus 498 ~~~Lyv~--GG~~~--~~~~~~v~~yD~~t~~W~~v~~lp~~R~~~s~~v~~--~-~Iyv~GG~~~~~~~~~~v~~Yd~~ 570 (592)
++++||. ||-.+ ....+.++++|+.+ ++.+..++.++..+.+++-. . .+|+.-+.+ ++|.++|..
T Consensus 259 g~~lyV~~~~~~~~thk~~~~~V~ViD~~t--~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s------~~VsViD~~ 330 (352)
T TIGR02658 259 RDRIYLLADQRAKWTHKTASRFLFVVDAKT--GKRLRKIELGHEIDSINVSQDAKPLLYALSTGD------KTLYIFDAE 330 (352)
T ss_pred CCEEEEEecCCccccccCCCCEEEEEECCC--CeEEEEEeCCCceeeEEECCCCCeEEEEeCCCC------CcEEEEECc
Confidence 6889984 22211 13346899999755 55555555666666666653 3 567666543 558899975
No 245
>COG4398 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.41 E-value=74 Score=32.75 Aligned_cols=41 Identities=24% Similarity=0.643 Sum_probs=35.6
Q ss_pred cCcCCccceEEEeecCCChHHHhhhccccCCccCccchhccCCCCeE
Q 007704 12 NLQKSYLGGVIFGCKKSTIKECLAKQLFGLPAQHFLYVRKVDPGLPL 58 (592)
Q Consensus 12 ~~~~~~~~g~if~c~~~t~~e~~~~~~fgl~~~~~~~v~~i~~g~~l 58 (592)
.+.....|+..|.||.. .+++||.|..-.+.++..=+|.||
T Consensus 317 e~~~~avGaLmFsC~GR------G~~m~G~p~~Ds~~~~~~~~gipl 357 (389)
T COG4398 317 ELPGRAVGALLFTCNGR------GRRMFGVPDHDASTIEELLGGIPL 357 (389)
T ss_pred hCCCccceeEEEEecCc------cccccCCCCccHHHHHHHhCCCcc
Confidence 45556789999999997 578999999999999999999998
No 246
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=21.36 E-value=1.2e+03 Score=26.31 Aligned_cols=100 Identities=16% Similarity=0.212 Sum_probs=60.0
Q ss_pred ECCEEEEEeccCCCCCCCeeEEEeCCCCeEEEeccCCCCCceeEEEEE--CCEEEEEecCCCCCCCCeEEEEeCCCCeEE
Q 007704 450 LNGVLYATGGYDGNEYMNSAERFDPREHYWTKIANMNRRRGCHSLAVL--NGKLYALGGFDGSAMVPSIEVYDPRLGSWM 527 (592)
Q Consensus 450 ~~g~IYV~GG~~~~~~~~~v~~yD~~t~~W~~i~~~p~~R~~~s~v~~--~~~Lyv~GG~~~~~~~~~v~~yD~~t~~W~ 527 (592)
.++...++||.++. +++|-+....-.....+...|..-+.+.+ ++..++.|-. ...+..||..++.=
T Consensus 453 ~~~~~vaVGG~Dgk-----vhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da-----~rkvv~yd~~s~~~- 521 (603)
T KOG0318|consen 453 PDGSEVAVGGQDGK-----VHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDA-----SRKVVLYDVASREV- 521 (603)
T ss_pred CCCCEEEEecccce-----EEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEecc-----CCcEEEEEcccCce-
Confidence 37788899998753 78888777654444444455555666666 5666666543 34577788766432
Q ss_pred EcCCCCCCCcceEEEE------ECCEEEEEecccCCCccccEEEEEcCC
Q 007704 528 SGEPMKLSRGYLGAAV------VKEAIYVIGGVKNGSEIVDTVERFKEG 570 (592)
Q Consensus 528 ~v~~lp~~R~~~s~~v------~~~~Iyv~GG~~~~~~~~~~v~~Yd~~ 570 (592)
. +....+|++-+ -+++++..|+.+ ..|.+|+.+
T Consensus 522 ~----~~~w~FHtakI~~~aWsP~n~~vATGSlD------t~Viiysv~ 560 (603)
T KOG0318|consen 522 K----TNRWAFHTAKINCVAWSPNNKLVATGSLD------TNVIIYSVK 560 (603)
T ss_pred e----cceeeeeeeeEEEEEeCCCceEEEecccc------ceEEEEEcc
Confidence 1 11112233311 167777888875 348888865
No 247
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=21.23 E-value=1.6e+03 Score=28.30 Aligned_cols=94 Identities=15% Similarity=0.130 Sum_probs=46.7
Q ss_pred ceEEEEeCCCC--eEEEcccccCcccceEEEE---ECCEEEEEeccCCCCCCCeeEEEeCCC----CeEEEeccCCCCCc
Q 007704 420 SDVEMLDLDIG--KWIRTRSMLQKRFALAAAE---LNGVLYATGGYDGNEYMNSAERFDPRE----HYWTKIANMNRRRG 490 (592)
Q Consensus 420 ~~v~~yD~~t~--~W~~i~~~p~~R~~~~a~~---~~g~IYV~GG~~~~~~~~~v~~yD~~t----~~W~~i~~~p~~R~ 490 (592)
..+..+|+.+. -|+.-.+ +|++..... -.+...++|-..| .+..||++- ..|+-....+..+-
T Consensus 1173 ~~iv~~D~r~~~~~w~lk~~---~~hG~vTSi~idp~~~WlviGts~G-----~l~lWDLRF~~~i~sw~~P~~~~i~~v 1244 (1431)
T KOG1240|consen 1173 SRIVSWDTRMRHDAWRLKNQ---LRHGLVTSIVIDPWCNWLVIGTSRG-----QLVLWDLRFRVPILSWEHPARAPIRHV 1244 (1431)
T ss_pred cceEEecchhhhhHHhhhcC---ccccceeEEEecCCceEEEEecCCc-----eEEEEEeecCceeecccCcccCCcceE
Confidence 34555666542 3544333 344433222 2455666664332 255666654 45775554443333
Q ss_pred eeEEEEECCEEEEEecCCCCCCCCeEEEEeCCCC
Q 007704 491 CHSLAVLNGKLYALGGFDGSAMVPSIEVYDPRLG 524 (592)
Q Consensus 491 ~~s~v~~~~~Lyv~GG~~~~~~~~~v~~yD~~t~ 524 (592)
..+.+.-.+...|++|..+ .+.+..|+..++
T Consensus 1245 ~~~~~~~~~S~~vs~~~~~---~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1245 WLCPTYPQESVSVSAGSSS---NNEVSTWNMETG 1275 (1431)
T ss_pred EeeccCCCCceEEEecccC---CCceeeeecccC
Confidence 2222222447788888642 355666766655
No 248
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=21.02 E-value=6.5e+02 Score=23.07 Aligned_cols=66 Identities=14% Similarity=0.158 Sum_probs=38.6
Q ss_pred CEEEEEecCCCCCCCCeEEEEeCCCCeEEEcCCCCCCCcceEEEEE---CCEEEEEecccCCCccccEEEEEcCC---Cc
Q 007704 499 GKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKLSRGYLGAAVV---KEAIYVIGGVKNGSEIVDTVERFKEG---QG 572 (592)
Q Consensus 499 ~~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~lp~~R~~~s~~v~---~~~Iyv~GG~~~~~~~~~~v~~Yd~~---~~ 572 (592)
..++++|- .+.+..||...|.=.--.+++.+-....+..+ ...+.++||. -.++-||-+ --
T Consensus 64 ~D~LliGt------~t~llaYDV~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGn-------csi~Gfd~~G~e~f 130 (136)
T PF14781_consen 64 RDCLLIGT------QTSLLAYDVENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGN-------CSIQGFDYEGNEIF 130 (136)
T ss_pred cCEEEEec------cceEEEEEcccCchhhhhhCccceeEEEEEecCCCCCcEEEECce-------EEEEEeCCCCcEEE
Confidence 34677765 45799999988752112223322222222222 3568899996 348889976 34
Q ss_pred EEEcc
Q 007704 573 WEEIN 577 (592)
Q Consensus 573 W~~v~ 577 (592)
|+...
T Consensus 131 WtVtg 135 (136)
T PF14781_consen 131 WTVTG 135 (136)
T ss_pred EEecc
Confidence 87654
No 249
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=20.81 E-value=1.1e+03 Score=25.61 Aligned_cols=176 Identities=10% Similarity=0.062 Sum_probs=84.0
Q ss_pred EEEE-CCEEEEEeeCCCCCCcceEEEEECCCCeEEECCCCC------CC------------CcceEEEE-ECCEEEEEec
Q 007704 353 AAML-NGELYIFGGGDGNSWHNTVESYSPANDEWTSRPSLN------GT------------KGSLAGAT-IDNKIFAIGG 412 (592)
Q Consensus 353 ~v~~-~~~Iyv~GG~~~~~~~~~v~~yd~~t~~W~~l~~lp------~~------------r~~~~~~~-~~~~Iyv~GG 412 (592)
+..+ ++.++++|.. ..+++-+-.-.+|..+...+ .. -+.+.+.. -++.++++|-
T Consensus 184 i~~~~~~~~~ivg~~------G~v~~S~D~G~tW~~~~~~t~~~~l~~~~~s~~~g~~~y~Gsf~~v~~~~dG~~~~vg~ 257 (398)
T PLN00033 184 IKATGPKSAEMVTDE------GAIYVTSNAGRNWKAAVEETVSATLNRTVSSGISGASYYTGTFSTVNRSPDGDYVAVSS 257 (398)
T ss_pred EEEECCCceEEEecc------ceEEEECCCCCCceEcccccccccccccccccccccceeccceeeEEEcCCCCEEEEEC
Confidence 3344 4567777742 23566555667898762111 00 01112222 2556666653
Q ss_pred CCCCcccceEEE-EeCCCCeEEEcccccCcccceEEEEECCEEEEEeccCCCCCCCeeEEEeCCCCe-----EEEeccCC
Q 007704 413 GNGLECFSDVEM-LDLDIGKWIRTRSMLQKRFALAAAELNGVLYATGGYDGNEYMNSAERFDPREHY-----WTKIANMN 486 (592)
Q Consensus 413 ~~~~~~~~~v~~-yD~~t~~W~~i~~~p~~R~~~~a~~~~g~IYV~GG~~~~~~~~~v~~yD~~t~~-----W~~i~~~p 486 (592)
. -.+++ .|.-...|+.+..-...+........++.++++|.. ..+..-+-.... |..++..
T Consensus 258 ~------G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~------G~l~~S~d~G~~~~~~~f~~~~~~- 324 (398)
T PLN00033 258 R------GNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRG------GGLYVSKGTGLTEEDFDFEEADIK- 324 (398)
T ss_pred C------ccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCC------ceEEEecCCCCcccccceeecccC-
Confidence 2 12333 333333488775433333322223457888887742 123333333333 4443322
Q ss_pred CCCce-eEEEEE-CCEEEEEecCCCCCCCCeEEEEeCCCCeEEEcCCC-CCCCcceEEEEE-CCEEEEEec
Q 007704 487 RRRGC-HSLAVL-NGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPM-KLSRGYLGAAVV-KEAIYVIGG 553 (592)
Q Consensus 487 ~~R~~-~s~v~~-~~~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~l-p~~R~~~s~~v~-~~~Iyv~GG 553 (592)
..+.. ..++.. ++.+++.|... -+..-...-.+|+....- +.+-..+.+... +++.|+.|-
T Consensus 325 ~~~~~l~~v~~~~d~~~~a~G~~G------~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~ 389 (398)
T PLN00033 325 SRGFGILDVGYRSKKEAWAAGGSG------ILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGN 389 (398)
T ss_pred CCCcceEEEEEcCCCcEEEEECCC------cEEEeCCCCcceeEccccCCCCcceeEEEEcCCCceEEEeC
Confidence 22232 333333 67788887642 244444456689987521 111122333333 478888774
No 250
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=20.75 E-value=2.4e+02 Score=25.66 Aligned_cols=47 Identities=23% Similarity=0.244 Sum_probs=38.6
Q ss_pred cccHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHhhh
Q 007704 258 SSRCQSIINELIKEVAELKAFKTEQTLKMKELEQKLVDAEAEIQRLK 304 (592)
Q Consensus 258 ~~~~~~~i~~l~~e~~~l~~~~~~~~~~~~~l~~~~~~~~rki~~l~ 304 (592)
.++|...|+.|..+...++.....+..+|+.|+..+.....+...++
T Consensus 27 RaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~~~ 73 (134)
T PF08232_consen 27 RAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYKKLK 73 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 37899999999999999999999999999999887776655554433
No 251
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=20.62 E-value=3.6e+02 Score=23.81 Aligned_cols=43 Identities=26% Similarity=0.347 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHhhhhc
Q 007704 264 IINELIKEVAELKAFKTEQTLKMKELEQKLVDAEAEIQRLKEH 306 (592)
Q Consensus 264 ~i~~l~~e~~~l~~~~~~~~~~~~~l~~~~~~~~rki~~l~e~ 306 (592)
.-..|......+++......+++..++........++..++++
T Consensus 74 ~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E 116 (118)
T PF13815_consen 74 CQEYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKE 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344555555565555556666666666666666666666553
No 252
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=20.36 E-value=8.5e+02 Score=27.36 Aligned_cols=32 Identities=13% Similarity=0.251 Sum_probs=23.3
Q ss_pred CCEEEEEecCCCCCCCCeEEEEeCCCCeEEEcCCCCC
Q 007704 498 NGKLYALGGFDGSAMVPSIEVYDPRLGSWMSGEPMKL 534 (592)
Q Consensus 498 ~~~Lyv~GG~~~~~~~~~v~~yD~~t~~W~~v~~lp~ 534 (592)
+++-+++||. ..++-++|+.+-+=+.-.+++.
T Consensus 476 dgrtLivGGe-----astlsiWDLAapTprikaelts 507 (705)
T KOG0639|consen 476 DGRTLIVGGE-----ASTLSIWDLAAPTPRIKAELTS 507 (705)
T ss_pred CCceEEeccc-----cceeeeeeccCCCcchhhhcCC
Confidence 8999999996 4567888887766555555544
No 253
>PRK02793 phi X174 lysis protein; Provisional
Probab=20.14 E-value=4e+02 Score=21.47 Aligned_cols=46 Identities=15% Similarity=0.166 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHhhhhc
Q 007704 261 CQSIINELIKEVAELKAFKTEQTLKMKELEQKLVDAEAEIQRLKEH 306 (592)
Q Consensus 261 ~~~~i~~l~~e~~~l~~~~~~~~~~~~~l~~~~~~~~rki~~l~e~ 306 (592)
+-+.|.+|..++.-.++.+.++.+-+...++.+....+++..+.++
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~r 51 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEK 51 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666655555555555555555555555555555555443
Done!