BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007705
(592 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ZCV|A Chain A, Apo Form Of A Mutant Of Glycogenin In Which Asp159 Is
Replaced By Asn
Length = 353
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 106/221 (47%), Gaps = 14/221 (6%)
Query: 297 EAYATVLHSSEAYVCGAITLAQSLRKTGTKRDLVLLIDNSISIPKREALTAAGWXXXXXX 356
+A+ T L +++AY GA+ L SL++ T R L +L +S R+AL
Sbjct: 24 QAFVT-LTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVD 82
Query: 357 XXXNPRAEKKTYNE-----YNYSKFRLWQLTDYDKIIFIDADIIVLRNLDLLFHFPQMSA 411
+ + T + +K W LT Y K +F+DAD +VL N+D LF ++SA
Sbjct: 83 ILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSA 142
Query: 412 TGNDIW--IFNSGIMVIEPSNCTFRILMSKRKEIVSYNGGDQGFLNEVYVWWHR--LPRR 467
+ W FNSG+ V +PS T+ L+ E S+NGGDQG LN + W + +
Sbjct: 143 APDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFNGGDQGLLNTFFNSWATTDIRKH 202
Query: 468 VNFLKNFWANTTLEASVKNHLFGADPPKLYAIHYLG-LKPW 507
+ F+ N + + FGA+ +H+LG KPW
Sbjct: 203 LPFIYNLSSISIYSYLPAFKAFGANAK---VVHFLGQTKPW 240
>pdb|3Q4S|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1), Apo Form
pdb|3QVB|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese And Udp
pdb|3U2W|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese And Glucose Or A Glucal Species
pdb|3U2W|B Chain B, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese And Glucose Or A Glucal Species
Length = 263
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 107/221 (48%), Gaps = 14/221 (6%)
Query: 297 EAYATVLHSSEAYVCGAITLAQSLRKTGTKRDLVLLIDNSISIPKREALTAAGWXXXXXX 356
+A+ T L +++AY GA+ L SL++ T R LV+L +S R+ L
Sbjct: 5 QAFVT-LTTNDAYAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETVFDEVIMVD 63
Query: 357 XXXNPRAEKKTYNE-----YNYSKFRLWQLTDYDKIIFIDADIIVLRNLDLLFHFPQMSA 411
+ + T + +K W LT Y K +F+DAD +VL N+D LF ++SA
Sbjct: 64 VLDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFDREELSA 123
Query: 412 TGNDIW--IFNSGIMVIEPSNCTFRILMSKRKEIVSYNGGDQGFLNEVYVWWHR--LPRR 467
+ W FNSG+ V +PS T+ L+ E S++GGDQG LN + W + +
Sbjct: 124 APDPGWPDCFNSGVFVYQPSVETYNQLLHLASEQGSFDGGDQGILNTFFSSWATTDIRKH 183
Query: 468 VNFLKNFWANTTLEASVKNHLFGADPPKLYAIHYLG-LKPW 507
+ F+ N + + +FGA +H+LG +KPW
Sbjct: 184 LPFIYNLSSISIFSYLPAFKVFGASAK---VVHFLGRVKPW 221
>pdb|3U2T|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese
Length = 284
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 107/221 (48%), Gaps = 14/221 (6%)
Query: 297 EAYATVLHSSEAYVCGAITLAQSLRKTGTKRDLVLLIDNSISIPKREALTAAGWXXXXXX 356
+A+ T L +++AY GA+ L SL++ T R LV+L +S R+ L
Sbjct: 26 QAFVT-LTTNDAYAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETVFDEVIMVD 84
Query: 357 XXXNPRAEKKTYNE-----YNYSKFRLWQLTDYDKIIFIDADIIVLRNLDLLFHFPQMSA 411
+ + T + +K W LT Y K +F+DAD +VL N+D LF ++SA
Sbjct: 85 VLDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFDREELSA 144
Query: 412 TGNDIW--IFNSGIMVIEPSNCTFRILMSKRKEIVSYNGGDQGFLNEVYVWWHR--LPRR 467
+ W FNSG+ V +PS T+ L+ E S++GGDQG LN + W + +
Sbjct: 145 APDPGWPDCFNSGVFVYQPSVETYNQLLHLASEQGSFDGGDQGILNTFFSSWATTDIRKH 204
Query: 468 VNFLKNFWANTTLEASVKNHLFGADPPKLYAIHYLG-LKPW 507
+ F+ N + + +FGA +H+LG +KPW
Sbjct: 205 LPFIYNLSSISIYSYLPAFKVFGASAK---VVHFLGRVKPW 242
>pdb|3T7M|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese And Udp, In A Triclinic Closed Form
pdb|3T7M|B Chain B, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese And Udp, In A Triclinic Closed Form
pdb|3T7N|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese And Udp, In A Monoclinic Closed Form
pdb|3T7N|B Chain B, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese And Udp, In A Monoclinic Closed Form
pdb|3T7O|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp-Glucose And Glucose
pdb|3T7O|B Chain B, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp-Glucose And Glucose
pdb|3U2U|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp And Maltotetraose
pdb|3U2U|B Chain B, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp And Maltotetraose
pdb|3U2X|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp And 1'-Deoxyglucose
pdb|3U2X|B Chain B, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp And 1'-Deoxyglucose
pdb|3U2V|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp And Maltohexaose
pdb|3U2V|B Chain B, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp And Maltohexaose
Length = 263
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 107/221 (48%), Gaps = 14/221 (6%)
Query: 297 EAYATVLHSSEAYVCGAITLAQSLRKTGTKRDLVLLIDNSISIPKREALTAAGWXXXXXX 356
+A+ T L +++AY GA+ L SL++ T R LV+L +S R+ L
Sbjct: 5 QAFVT-LTTNDAYAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETVFDEVIMVD 63
Query: 357 XXXNPRAEKKTYNE-----YNYSKFRLWQLTDYDKIIFIDADIIVLRNLDLLFHFPQMSA 411
+ + T + +K W LT Y K +F+DAD +VL N+D LF ++SA
Sbjct: 64 VLDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFDREELSA 123
Query: 412 TGNDIW--IFNSGIMVIEPSNCTFRILMSKRKEIVSYNGGDQGFLNEVYVWWHR--LPRR 467
+ W FNSG+ V +PS T+ L+ E S++GGDQG LN + W + +
Sbjct: 124 APDPGWPDCFNSGVFVYQPSVETYNQLLHLASEQGSFDGGDQGILNTFFSSWATTDIRKH 183
Query: 468 VNFLKNFWANTTLEASVKNHLFGADPPKLYAIHYLG-LKPW 507
+ F+ N + + +FGA +H+LG +KPW
Sbjct: 184 LPFIYNLSSISIYSYLPAFKVFGASAK---VVHFLGRVKPW 221
>pdb|3USR|A Chain A, Structure Of Y194f Glycogenin Mutant Truncated At Residue
270
Length = 291
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 106/221 (47%), Gaps = 14/221 (6%)
Query: 297 EAYATVLHSSEAYVCGAITLAQSLRKTGTKRDLVLLIDNSISIPKREALTAAGWXXXXXX 356
+A+ T L +++AY GA+ L SL++ T R L +L +S R+AL
Sbjct: 24 QAFVT-LTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVD 82
Query: 357 XXXNPRAEKKTYNE-----YNYSKFRLWQLTDYDKIIFIDADIIVLRNLDLLFHFPQMSA 411
+ + T + +K W LT Y K +F+DAD +VL N+D LF ++SA
Sbjct: 83 ILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSA 142
Query: 412 TGNDIW--IFNSGIMVIEPSNCTFRILMSKRKEIVSYNGGDQGFLNEVYVWWHR--LPRR 467
+ W FNSG+ V +PS T+ L+ E S++GGDQG LN + W + +
Sbjct: 143 APDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKH 202
Query: 468 VNFLKNFWANTTLEASVKNHLFGADPPKLYAIHYLG-LKPW 507
+ F+ N + + FGA+ +H+LG KPW
Sbjct: 203 LPFIYNLSSISIFSYLPAFKAFGANAK---VVHFLGQTKPW 240
>pdb|3USQ|A Chain A, Structure Of D159sY194F GLYCOGENIN MUTANT TRUNCATED AT
RESIDUE 270
Length = 291
Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 106/221 (47%), Gaps = 14/221 (6%)
Query: 297 EAYATVLHSSEAYVCGAITLAQSLRKTGTKRDLVLLIDNSISIPKREALTAAGWXXXXXX 356
+A+ T L +++AY GA+ L SL++ T R L +L +S R+AL
Sbjct: 24 QAFVT-LTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVD 82
Query: 357 XXXNPRAEKKTYNE-----YNYSKFRLWQLTDYDKIIFIDADIIVLRNLDLLFHFPQMSA 411
+ + T + +K W LT Y K +F+DAD +VL N+D LF ++SA
Sbjct: 83 ILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSA 142
Query: 412 TGNDIW--IFNSGIMVIEPSNCTFRILMSKRKEIVSYNGGDQGFLNEVYVWWHR--LPRR 467
+ W FNSG+ V +PS T+ L+ E S++GGDQG LN + W + +
Sbjct: 143 APDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFSGGDQGLLNTFFNSWATTDIRKH 202
Query: 468 VNFLKNFWANTTLEASVKNHLFGADPPKLYAIHYLG-LKPW 507
+ F+ N + + FGA+ +H+LG KPW
Sbjct: 203 LPFIYNLSSISIFSYLPAFKAFGANAK---VVHFLGQTKPW 240
>pdb|1LL2|A Chain A, Crystal Structure Of Rabbit Muscle Glycogenin Complexed
With Udp- Glucose And Manganese
pdb|1LL3|A Chain A, Crystal Structure Of Rabbit Muscle Glycogenin
Length = 333
Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 106/221 (47%), Gaps = 14/221 (6%)
Query: 297 EAYATVLHSSEAYVCGAITLAQSLRKTGTKRDLVLLIDNSISIPKREALTAAGWXXXXXX 356
+A+ T L +++AY GA+ L SL++ T R L +L +S R+AL
Sbjct: 4 QAFVT-LTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVD 62
Query: 357 XXXNPRAEKKTYNE-----YNYSKFRLWQLTDYDKIIFIDADIIVLRNLDLLFHFPQMSA 411
+ + T + +K W LT Y K +F+DAD +VL N+D LF ++SA
Sbjct: 63 ILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSA 122
Query: 412 TGNDIW--IFNSGIMVIEPSNCTFRILMSKRKEIVSYNGGDQGFLNEVYVWWHR--LPRR 467
+ W FNSG+ V +PS T+ L+ E S++GGDQG LN + W + +
Sbjct: 123 APDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKH 182
Query: 468 VNFLKNFWANTTLEASVKNHLFGADPPKLYAIHYLG-LKPW 507
+ F+ N + + FGA+ +H+LG KPW
Sbjct: 183 LPFIYNLSSISIYSYLPAFKAFGANAK---VVHFLGQTKPW 220
>pdb|1LL0|A Chain A, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|B Chain B, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|C Chain C, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|D Chain D, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|E Chain E, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|F Chain F, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|G Chain G, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|H Chain H, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|I Chain I, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|J Chain J, Crystal Structure Of Rabbit Muscle Glycogenin
Length = 339
Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 106/221 (47%), Gaps = 14/221 (6%)
Query: 297 EAYATVLHSSEAYVCGAITLAQSLRKTGTKRDLVLLIDNSISIPKREALTAAGWXXXXXX 356
+A+ T L +++AY GA+ L SL++ T R L +L +S R+AL
Sbjct: 10 QAFVT-LTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVD 68
Query: 357 XXXNPRAEKKTYNE-----YNYSKFRLWQLTDYDKIIFIDADIIVLRNLDLLFHFPQMSA 411
+ + T + +K W LT Y K +F+DAD +VL N+D LF ++SA
Sbjct: 69 ILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSA 128
Query: 412 TGNDIW--IFNSGIMVIEPSNCTFRILMSKRKEIVSYNGGDQGFLNEVYVWWHR--LPRR 467
+ W FNSG+ V +PS T+ L+ E S++GGDQG LN + W + +
Sbjct: 129 APDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKH 188
Query: 468 VNFLKNFWANTTLEASVKNHLFGADPPKLYAIHYLG-LKPW 507
+ F+ N + + FGA+ +H+LG KPW
Sbjct: 189 LPFIYNLSSISIYSYLPAFKAFGANAK---VVHFLGQTKPW 226
>pdb|3RMW|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) T83m Mutant
Complexed With Manganese And Udp-Glucose
pdb|3RMV|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) T83m Mutant
Complexed With Manganese And Udp
Length = 263
Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 107/221 (48%), Gaps = 14/221 (6%)
Query: 297 EAYATVLHSSEAYVCGAITLAQSLRKTGTKRDLVLLIDNSISIPKREALTAAGWXXXXXX 356
+A+ T L +++AY GA+ L SL++ T R LV+L +S R+ L
Sbjct: 5 QAFVT-LTTNDAYAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETVFDEVIMVD 63
Query: 357 XXXNPRAEKKTYNE-----YNYSKFRLWQLTDYDKIIFIDADIIVLRNLDLLFHFPQMSA 411
+ + T + +K W LT Y K +F+DAD +VL N+D LF ++SA
Sbjct: 64 VLDSGDSAHLTLMKRPELGVMLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFDREELSA 123
Query: 412 TGNDIW--IFNSGIMVIEPSNCTFRILMSKRKEIVSYNGGDQGFLNEVYVWWHR--LPRR 467
+ W FNSG+ V +PS T+ L+ E S++GGDQG LN + W + +
Sbjct: 124 APDPGWPDCFNSGVFVYQPSVETYNQLLHLASEQGSFDGGDQGILNTFFSSWATTDIRKH 183
Query: 468 VNFLKNFWANTTLEASVKNHLFGADPPKLYAIHYLG-LKPW 507
+ F+ N + + +FGA +H+LG +KPW
Sbjct: 184 LPFIYNLSSISIYSYLPAFKVFGASAK---VVHFLGRVKPW 221
>pdb|1ZCY|A Chain A, Apo Form Of A Mutant Of Glycogenin In Which Asp159 Is
Replaced By Ser
pdb|1ZDG|A Chain A, Ser159 Mutant Of Glycogenin Complexed With Udp-Glucose And
Manganese
Length = 353
Score = 92.4 bits (228), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 106/221 (47%), Gaps = 14/221 (6%)
Query: 297 EAYATVLHSSEAYVCGAITLAQSLRKTGTKRDLVLLIDNSISIPKREALTAAGWXXXXXX 356
+A+ T L +++AY GA+ L SL++ T R L +L +S R+AL
Sbjct: 24 QAFVT-LTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVD 82
Query: 357 XXXNPRAEKKTYNE-----YNYSKFRLWQLTDYDKIIFIDADIIVLRNLDLLFHFPQMSA 411
+ + T + +K W LT Y K +F+DAD +VL N+D LF ++SA
Sbjct: 83 ILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSA 142
Query: 412 TGNDIW--IFNSGIMVIEPSNCTFRILMSKRKEIVSYNGGDQGFLNEVYVWWHR--LPRR 467
+ W FNSG+ V +PS T+ L+ E S++GGDQG LN + W + +
Sbjct: 143 APDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFSGGDQGLLNTFFNSWATTDIRKH 202
Query: 468 VNFLKNFWANTTLEASVKNHLFGADPPKLYAIHYLG-LKPW 507
+ F+ N + + FGA+ +H+LG KPW
Sbjct: 203 LPFIYNLSSISIYSYLPAFKAFGANAK---VVHFLGQTKPW 240
>pdb|3V8Y|A Chain A, Structure Of Apo-Glycogenin Truncated At Residue 270
pdb|3V8Z|A Chain A, Structure Of Apo-Glycogenin Truncated At Residue 270
Complexed With Udp
Length = 291
Score = 92.4 bits (228), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 106/221 (47%), Gaps = 14/221 (6%)
Query: 297 EAYATVLHSSEAYVCGAITLAQSLRKTGTKRDLVLLIDNSISIPKREALTAAGWXXXXXX 356
+A+ T L +++AY GA+ L SL++ T R L +L +S R+AL
Sbjct: 24 QAFVT-LTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVD 82
Query: 357 XXXNPRAEKKTYNE-----YNYSKFRLWQLTDYDKIIFIDADIIVLRNLDLLFHFPQMSA 411
+ + T + +K W LT Y K +F+DAD +VL N+D LF ++SA
Sbjct: 83 ILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSA 142
Query: 412 TGNDIW--IFNSGIMVIEPSNCTFRILMSKRKEIVSYNGGDQGFLNEVYVWWHR--LPRR 467
+ W FNSG+ V +PS T+ L+ E S++GGDQG LN + W + +
Sbjct: 143 APDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKH 202
Query: 468 VNFLKNFWANTTLEASVKNHLFGADPPKLYAIHYLG-LKPW 507
+ F+ N + + FGA+ +H+LG KPW
Sbjct: 203 LPFIYNLSSISIYSYLPAFKAFGANAK---VVHFLGQTKPW 240
>pdb|1ZCT|A Chain A, Structure Of Glycogenin Truncated At Residue 270 In A
Complex With Udp
pdb|1ZCT|B Chain B, Structure Of Glycogenin Truncated At Residue 270 In A
Complex With Udp
Length = 290
Score = 92.0 bits (227), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 106/221 (47%), Gaps = 14/221 (6%)
Query: 297 EAYATVLHSSEAYVCGAITLAQSLRKTGTKRDLVLLIDNSISIPKREALTAAGWXXXXXX 356
+A+ T L +++AY GA+ L SL++ T R L +L +S R+AL
Sbjct: 24 QAFVT-LTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVD 82
Query: 357 XXXNPRAEKKTYNE-----YNYSKFRLWQLTDYDKIIFIDADIIVLRNLDLLFHFPQMSA 411
+ + T + +K W LT Y K +F+DAD +VL N+D LF ++SA
Sbjct: 83 ILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSA 142
Query: 412 TGNDIW--IFNSGIMVIEPSNCTFRILMSKRKEIVSYNGGDQGFLNEVYVWWHR--LPRR 467
+ W FNSG+ V +PS T+ L+ E S++GGDQG LN + W + +
Sbjct: 143 APDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKH 202
Query: 468 VNFLKNFWANTTLEASVKNHLFGADPPKLYAIHYLG-LKPW 507
+ F+ N + + FGA+ +H+LG KPW
Sbjct: 203 LPFIYNLSSISIYSYLPAFKAFGANAK---VVHFLGQTKPW 240
>pdb|3V90|A Chain A, Structure Of T82m Glycogenin Mutant Truncated At Residue
270
pdb|3V91|A Chain A, Structure Of T82m Glycogenin Mutant Truncated At Residue
270 Complexed With Udp-Glucose
Length = 291
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 106/221 (47%), Gaps = 14/221 (6%)
Query: 297 EAYATVLHSSEAYVCGAITLAQSLRKTGTKRDLVLLIDNSISIPKREALTAAGWXXXXXX 356
+A+ T L +++AY GA+ L SL++ T R L +L +S R+AL
Sbjct: 24 QAFVT-LTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVD 82
Query: 357 XXXNPRAEKKTYNE-----YNYSKFRLWQLTDYDKIIFIDADIIVLRNLDLLFHFPQMSA 411
+ + T + +K W LT Y K +F+DAD +VL N+D LF ++SA
Sbjct: 83 ILDSGDSAHLTLMKRPELGVMLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSA 142
Query: 412 TGNDIW--IFNSGIMVIEPSNCTFRILMSKRKEIVSYNGGDQGFLNEVYVWWHR--LPRR 467
+ W FNSG+ V +PS T+ L+ E S++GGDQG LN + W + +
Sbjct: 143 APDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKH 202
Query: 468 VNFLKNFWANTTLEASVKNHLFGADPPKLYAIHYLG-LKPW 507
+ F+ N + + FGA+ +H+LG KPW
Sbjct: 203 LPFIYNLSSISIYSYLPAFKAFGANAK---VVHFLGQTKPW 240
>pdb|1ZCU|A Chain A, Apo Form Of The 162s Mutant Of Glycogenin
pdb|1ZDF|A Chain A, Ser162 Mutant Of Glycogenin Complexed With Udp-Glucose And
Manganese
Length = 353
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 105/221 (47%), Gaps = 14/221 (6%)
Query: 297 EAYATVLHSSEAYVCGAITLAQSLRKTGTKRDLVLLIDNSISIPKREALTAAGWXXXXXX 356
+A+ T L +++AY GA+ L SL++ T R L +L +S R+AL
Sbjct: 24 QAFVT-LTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVD 82
Query: 357 XXXNPRAEKKTYNE-----YNYSKFRLWQLTDYDKIIFIDADIIVLRNLDLLFHFPQMSA 411
+ + T + +K W LT Y K +F+DAD +VL N+D LF ++SA
Sbjct: 83 ILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSA 142
Query: 412 TGNDIW--IFNSGIMVIEPSNCTFRILMSKRKEIVSYNGGDQGFLNEVYVWWHR--LPRR 467
+ W FNSG+ V +PS T+ L+ E S++GG QG LN + W + +
Sbjct: 143 APDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGSQGLLNTFFNSWATTDIRKH 202
Query: 468 VNFLKNFWANTTLEASVKNHLFGADPPKLYAIHYLG-LKPW 507
+ F+ N + + FGA+ +H+LG KPW
Sbjct: 203 LPFIYNLSSISIYSYLPAFKAFGANAK---VVHFLGQTKPW 240
>pdb|2EX5|A Chain A, Group I Intron-encoded Homing Endonuclease I-ceui
Complexed With Dna
pdb|2EX5|B Chain B, Group I Intron-encoded Homing Endonuclease I-ceui
Complexed With Dna
Length = 207
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 13/87 (14%)
Query: 256 LEQKVSLPVGSCKLALPLWGQGVDEVYDLSRIKSATKIAKREAYATVLHSSEAYVCGAIT 315
LE + SL + + KLA +G VD ++++R + K+ + + E + G I
Sbjct: 59 LEGEASLNISTKKLATSKFGLVVDPEFNVTRHVNGVKV--------LYLALEVFKTGRIR 110
Query: 316 LAQSLRKTGTKRDLVLLIDNSISIPKR 342
K+G+ LVL IDN S+ ++
Sbjct: 111 -----HKSGSNATLVLTIDNRQSLEEK 132
>pdb|2ZKQ|BB Chain b, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 295
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Query: 60 RECHHKVEKSMKMEAILEESTKAKPKRLNVSKIEVPSFMNAMGKGVKIGMVNMDEFDTDE 119
+E EK++ E E T P+ ++ EV + +GV++ V + +F T++
Sbjct: 212 KEEQAAAEKAVTKEEFQGEWTAPAPE-FTAAQPEVADW----SEGVQVPSVPIQQFPTED 266
Query: 120 WKVRGETIPINFEPVSEYFKWQDLFPEW 147
W + T + P ++ +W EW
Sbjct: 267 WSAQPSTEDWSAAPTAQATEWVGTTTEW 294
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.443
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,924,164
Number of Sequences: 62578
Number of extensions: 762005
Number of successful extensions: 1428
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1385
Number of HSP's gapped (non-prelim): 27
length of query: 592
length of database: 14,973,337
effective HSP length: 104
effective length of query: 488
effective length of database: 8,465,225
effective search space: 4131029800
effective search space used: 4131029800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)