Query 007705
Match_columns 592
No_of_seqs 301 out of 1353
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 08:26:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007705.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007705hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ll2_A Glycogenin-1; protein-s 100.0 3.4E-45 1.2E-49 382.9 18.2 270 295-578 2-319 (333)
2 3u2u_A Glycogenin-1, GN-1, GN1 100.0 1.1E-43 3.8E-48 360.9 18.3 239 295-541 3-257 (263)
3 3tzt_A Glycosyl transferase fa 100.0 2.8E-33 9.7E-38 285.2 12.4 224 303-543 10-273 (276)
4 1g9r_A Glycosyl transferase; a 100.0 6.5E-30 2.2E-34 263.6 15.7 206 303-510 5-255 (311)
5 1qg8_A Protein (spore coat pol 61.2 17 0.0006 34.1 7.1 99 297-399 3-104 (255)
6 3f1y_A Mannosyl-3-phosphoglyce 48.9 32 0.0011 36.0 7.3 96 294-395 93-191 (387)
7 3bcv_A Putative glycosyltransf 44.0 9.6 0.00033 35.5 2.1 92 295-399 5-100 (240)
8 2p6w_A VP54, putative glycosyl 42.1 31 0.001 33.6 5.2 56 379-434 68-135 (213)
9 2d7i_A Polypeptide N-acetylgal 34.8 25 0.00085 38.4 3.9 102 293-404 110-218 (570)
10 1fo8_A Alpha-1,3-mannosyl-glyc 34.6 63 0.0021 33.5 6.7 90 313-403 16-119 (343)
11 1xhb_A Polypeptide N-acetylgal 32.1 65 0.0022 33.7 6.5 102 292-404 26-136 (472)
12 3ckj_A Putative uncharacterize 30.6 81 0.0028 31.5 6.6 102 294-404 47-154 (329)
13 2z86_A Chondroitin synthase; G 29.2 99 0.0034 33.5 7.5 96 294-399 92-190 (625)
14 1o7q_A N-acetyllactosaminide a 27.9 53 0.0018 33.5 4.6 168 295-474 48-264 (289)
15 2ffu_A Ppgalnact-2, polypeptid 22.3 1.4E+02 0.005 31.4 7.0 100 293-404 64-168 (501)
No 1
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*
Probab=100.00 E-value=3.4e-45 Score=382.88 Aligned_cols=270 Identities=29% Similarity=0.421 Sum_probs=193.1
Q ss_pred CCEEEEEEeecChhhHHHHHHHHHHHHHhCCCCcEEEEECCCCCHHHHHHHHHcCCEEEEEeeccCccccc-----ccCC
Q 007705 295 KREAYATVLHSSEAYVCGAITLAQSLRKTGTKRDLVLLIDNSISIPKREALTAAGWKIRIIKRIRNPRAEK-----KTYN 369 (592)
Q Consensus 295 ~r~AYVTlLtsdd~Yl~gAlVL~~SLr~~ns~~dLvVLvtd~ise~~r~~L~~~g~~Ii~V~~i~~p~~~~-----~~~~ 369 (592)
+++||||+. +|++|++++.|+++||++++++++++||++++++++.++.|++.+.+++.|+.+..+.... ....
T Consensus 2 s~~a~vt~~-~d~~Yl~~a~vl~~SL~~~~s~~~l~vlv~~~is~~~~~~L~~~~~~v~~v~~l~~~~~~~~~~~~~~~~ 80 (333)
T 1ll2_A 2 TDQAFVTLT-TNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVDILDSGDSAHLTLMKRPEL 80 (333)
T ss_dssp CSEEEEEEE-SSHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCHHHHHHHHHHCSEEEECCTTSTTSTTHHHHHHCGGG
T ss_pred CceEEEEEE-eCHHHHHHHHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHhCCEEEEEeecCCcchhhcccccccch
Confidence 579999975 6899999999999999999999999999999999999999999999999998776543211 1223
Q ss_pred ccceeeeecccccCcceEEEEecCeeeccCchhhhCCCCceeecCCC--cceeceEEEEeCCHHHHHHHHHHHHcCCCCC
Q 007705 370 EYNYSKFRLWQLTDYDKIIFIDADIIVLRNLDLLFHFPQMSATGNDI--WIFNSGIMVIEPSNCTFRILMSKRKEIVSYN 447 (592)
Q Consensus 370 ~~tytKL~iw~LtdYDRVLYLDaD~LVl~nIDeLFdlp~iaAvpD~~--~yFNSGVMVInPs~~~fe~Lle~~~e~~sy~ 447 (592)
..+|+||++|++++||||||||+|+||++|||+||+++.++|++|.+ .||||||||+||+..+++++++.+.+.+++.
T Consensus 81 ~~t~~Kl~i~~l~~ydrvlYLDaD~lv~~di~eLf~~~~~aAv~d~~~~~~fNsGvmlin~~~~~~~~l~~~~~~~~~~~ 160 (333)
T 1ll2_A 81 GVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFD 160 (333)
T ss_dssp HHHHHHGGGGGCTTCSEEEEECTTEEECSCCGGGGGSCSSEEEECSSSTTSEEEEEEEECCCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHhHhcCCCeEEEEeCCEEeccCHHHHhCCCceeEEecCCCCcceeeeEEEEeCCHHHHHHHHHHHHhcCCCC
Confidence 46899999999999999999999999999999999999999999875 5999999999999999999999998878889
Q ss_pred CCCcchHHhhccce------eecCCcccccccccccchhhhhhcccccCCCCCCcEEEEecC-CCCCCccCCCCCcccCC
Q 007705 448 GGDQGFLNEVYVWW------HRLPRRVNFLKNFWANTTLEASVKNHLFGADPPKLYAIHYLG-LKPWACYRDYDCNWDIG 520 (592)
Q Consensus 448 ~~DQdiLN~vF~~w------~~LP~rYN~l~~~~~~~~~~~~~~~~~~~~~~~~~kIIHF~G-~KPW~~~~~~dcnw~~~ 520 (592)
++|||+||.+|.+| ..||.+||++.+..+.. .+.+.....+++||||+| .|||...... .
T Consensus 161 ~~DQ~~LN~~f~~~~~~~~~~~Lp~~yN~~~~~~~~~-------~p~~~~~~~~~~IiHf~g~~KPW~~~~~~------~ 227 (333)
T 1ll2_A 161 GGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSY-------LPAFKAFGANAKVVHFLGQTKPWNYTYDT------K 227 (333)
T ss_dssp SSHHHHHHHHTTTTTTSCGGGBCCGGGSEETTHHHHT-------HHHHHHHGGGCSEEECCSSCCGGGSCEET------T
T ss_pred CCCHHHHHHHHHhhcccCccccCCcHHhcccccchhc-------cHHHHhhcCCCEEEEECCCCCCCCCCCCC------C
Confidence 99999999999977 79999999986531110 001112246799999999 5999875321 1
Q ss_pred CCccc-C-------CchhHHHHHHHHHHH-HHHHhhhc------C---------------C----CcccccCcHHHHHHH
Q 007705 521 NQRVY-A-------SDVAHERWWKLHDSM-DDKLQKFC------G---------------L----TKRRRIDLDWDRKKA 566 (592)
Q Consensus 521 ~~~~~-a-------sd~~~~~WW~vyd~~-~e~l~~~c------~---------------l----~~~~~~~~~~~R~~a 566 (592)
....+ + .+.++++||++|++. ...++..| + + +..+.+...++||+|
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~WW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (333)
T 1ll2_A 228 TKSVRSEGHDPTMTHPQFLNVWWDIFTTSVVPLLQQFGLVQDTCSYQHVEDVSGAVSHLSLGETPATTQPFVSSEERKER 307 (333)
T ss_dssp TTEEC--------CCHHHHHHHHHHHHHTHHHHHTC--------------------------------------------
T ss_pred ccccccccccccccHHHHHHHHHHHHHhhcccccchhhccCCCCCccchhhhhhhhhccccccccCccCCCCCcHHHHHH
Confidence 11111 0 246789999999954 34444333 1 0 111223368899999
Q ss_pred HHcCCCCcccee
Q 007705 567 REAGLPDQHWRI 578 (592)
Q Consensus 567 ~~~~~~d~h~~~ 578 (592)
||.|+.||.|+-
T Consensus 308 we~g~~dy~g~d 319 (333)
T 1ll2_A 308 WEQGQADYMGAD 319 (333)
T ss_dssp ------------
T ss_pred HhccCCccccch
Confidence 999999999974
No 2
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A
Probab=100.00 E-value=1.1e-43 Score=360.90 Aligned_cols=239 Identities=28% Similarity=0.422 Sum_probs=191.3
Q ss_pred CCEEEEEEeecChhhHHHHHHHHHHHHHhCCCCcEEEEECCCCCHHHHHHHHHcCCEEEEEeeccCcccc-----cccCC
Q 007705 295 KREAYATVLHSSEAYVCGAITLAQSLRKTGTKRDLVLLIDNSISIPKREALTAAGWKIRIIKRIRNPRAE-----KKTYN 369 (592)
Q Consensus 295 ~r~AYVTlLtsdd~Yl~gAlVL~~SLr~~ns~~dLvVLvtd~ise~~r~~L~~~g~~Ii~V~~i~~p~~~-----~~~~~ 369 (592)
+++||||++ +|++|++||+|+++||+++++++++++|++++++++.++.|++.|.+++.|+.+..+... .....
T Consensus 3 ~~~AyvTl~-td~~Yl~ga~vL~~SL~~~~s~~~lvvLvt~~vs~~~~~~L~~~~~~vi~V~~l~~~~~~~~~~~~rp~~ 81 (263)
T 3u2u_A 3 TDQAFVTLT-TNDAYAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETVFDEVIMVDVLDSGDSAHLTLMKRPEL 81 (263)
T ss_dssp TTEEEEEEE-SSHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCHHHHHHHHHHSSEEEECCCCCCCCHHHHHHTTCTTG
T ss_pred cceEEEEEE-ECHHHHHHHHHHHHHHHHhCCCCCEEEEecCCCCHHHHHHHHHcCCeEEEeeecCCcchhhhhhhcCcch
Confidence 589999976 589999999999999999999999999999999999999999999999999887654221 11223
Q ss_pred ccceeeeecccccCcceEEEEecCeeeccCchhhhCCCCceeecCCC--cceeceEEEEeCCHHHHHHHHHHHHcCCCCC
Q 007705 370 EYNYSKFRLWQLTDYDKIIFIDADIIVLRNLDLLFHFPQMSATGNDI--WIFNSGIMVIEPSNCTFRILMSKRKEIVSYN 447 (592)
Q Consensus 370 ~~tytKL~iw~LtdYDRVLYLDaD~LVl~nIDeLFdlp~iaAvpD~~--~yFNSGVMVInPs~~~fe~Lle~~~e~~sy~ 447 (592)
..+|+||++|++++||||||||+|++|++|||+||+++.++|++|.+ .|||||||||+|+..+++++++.+.+.+++.
T Consensus 82 ~~~~~kl~~~~l~~~~~vlylD~D~~v~~~~~~Lf~~~~~aA~~d~~~~~~fNsGv~li~p~~~~~~~l~~~~~~~~~~~ 161 (263)
T 3u2u_A 82 GVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFDREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHLASEQGSFD 161 (263)
T ss_dssp GGGGGGGGGGGCTTCSEEEEECTTEEECSCCGGGGGSCSSEEEECTTSTTSEEEEEEEECCCHHHHHHHHHHHHHHCCTT
T ss_pred hHHhHHHHhccccCcceEEEEcCCEeeccCHHHHhCCCcceEeccCCCCccccCeEEEEcccHHHHHHHHHHHHhcCCCC
Confidence 56999999999999999999999999999999999999999999975 5999999999999999999999998878899
Q ss_pred CCCcchHHhhccc------eeecCCcccccccccccchhhhhhcccccCCCCCCcEEEEecC-CCCCCccCCCCC-cccC
Q 007705 448 GGDQGFLNEVYVW------WHRLPRRVNFLKNFWANTTLEASVKNHLFGADPPKLYAIHYLG-LKPWACYRDYDC-NWDI 519 (592)
Q Consensus 448 ~~DQdiLN~vF~~------w~~LP~rYN~l~~~~~~~~~~~~~~~~~~~~~~~~~kIIHF~G-~KPW~~~~~~dc-nw~~ 519 (592)
++|||+||.+|.+ |..||.+||++.+..+.. .+.+....++++||||+| .|||+...+... .-..
T Consensus 162 ~~DQd~LN~~f~~w~~~~~~~~Lp~~yN~~~~~~y~~-------~~~~~~~~~~~~IIHf~g~~KPW~~~~~~~~~~~~~ 234 (263)
T 3u2u_A 162 GGDQGILNTFFSSWATTDIRKHLPFIYNLSSISIYSY-------LPAFKVFGASAKVVHFLGRVKPWNYTYDPKTKSVKS 234 (263)
T ss_dssp SSHHHHHHHHTTTTTTSCGGGBCCGGGSEEHHHHHSS-------HHHHHHHGGGCSEEECCSSSCGGGSEEETTTTEEEC
T ss_pred cccHHHHHHHhccccccCeeEeCCcccccccchhccc-------cHHHHhhcCCeEEEEECCCCcCCCCCCCCCCCcccc
Confidence 9999999999985 479999999986431110 111222346799999999 599986432110 0000
Q ss_pred CCCccc-CCchhHHHHHHHHHHH
Q 007705 520 GNQRVY-ASDVAHERWWKLHDSM 541 (592)
Q Consensus 520 ~~~~~~-asd~~~~~WW~vyd~~ 541 (592)
.....+ ..+.+-++||.+|++.
T Consensus 235 ~~~~~~~~~~~~~~~ww~~~~~~ 257 (263)
T 3u2u_A 235 EAHDPNMTHPEFLILWWNIFTTN 257 (263)
T ss_dssp CSSCGGGSSTHHHHHHHHHHHHH
T ss_pred cCCCcchhHHHHHHHHHHHHHhh
Confidence 000000 1156789999999863
No 3
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0
Probab=100.00 E-value=2.8e-33 Score=285.22 Aligned_cols=224 Identities=18% Similarity=0.223 Sum_probs=155.0
Q ss_pred eecChhhHHHHHHHHHHHHHhCCCCcEEE-EECCCCCHHHHHHHHH----cCCEEEEEeeccCccc---ccccCCcccee
Q 007705 303 LHSSEAYVCGAITLAQSLRKTGTKRDLVL-LIDNSISIPKREALTA----AGWKIRIIKRIRNPRA---EKKTYNEYNYS 374 (592)
Q Consensus 303 Ltsdd~Yl~gAlVL~~SLr~~ns~~dLvV-Lvtd~ise~~r~~L~~----~g~~Ii~V~~i~~p~~---~~~~~~~~tyt 374 (592)
+++|++|+.++.|+++||++|+++.++.+ +.+++++++.++.|++ .++++..++.-...+. ...+++..+|+
T Consensus 10 ~~~d~~Y~~~~~v~i~Sl~~~~~~~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~s~~~~~ 89 (276)
T 3tzt_A 10 LTLDENYIPQMKVLMTSIYINNPGRIFDVYLIHSRISEDKLKDLGEDLKKFSYTLYPIRATDDLFSFAKVTDRYPKEMYY 89 (276)
T ss_dssp EECCGGGHHHHHHHHHHHHHHSTTCCEEEEEEESCCCHHHHHHHHHHHHTTTCEEEEEECC-------------CHHHHH
T ss_pred EEeCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCHHHHHHHHHHHHHcCCEEEEEEeCHHHHhcCccccccCHHHHH
Confidence 56799999999999999999998555433 4456799988877776 4677666543221111 11245567899
Q ss_pred eeeccccc--CcceEEEEecCeeeccCchhhhCCC----CceeecCC-----------------CcceeceEEEEeCCHH
Q 007705 375 KFRLWQLT--DYDKIIFIDADIIVLRNLDLLFHFP----QMSATGND-----------------IWIFNSGIMVIEPSNC 431 (592)
Q Consensus 375 KL~iw~Lt--dYDRVLYLDaD~LVl~nIDeLFdlp----~iaAvpD~-----------------~~yFNSGVMVInPs~~ 431 (592)
||+++++. +++||||||+|++|++||++||+++ .++|++|. +.||||||||+|++.|
T Consensus 90 rl~~~~l~p~~~~kvlylD~D~iv~~di~~L~~~dl~~~~~aav~d~~~~~~~~~~~~~~l~~~~~yfNsGV~linl~~~ 169 (276)
T 3tzt_A 90 RLLAGEFLPENLGEILYLDPDMLVINPLDDLLRTDISDYILAAASHTGKTDMANNVNRIRLGTDTDYYNSGLLLINLKRA 169 (276)
T ss_dssp HHTHHHHSCTTCCEEEEECSSEEECSCSHHHHTCCCTTSSEEEEEC--------------------CEEEEEEEEEHHHH
T ss_pred HHHHHHHcccccCeEEEEeCCeeecCCHHHHhhcCCCCCeEEEEEecccchHHHHHHHhcCCCCCCeEEeeEEEEEHHHH
Confidence 99999985 5999999999999999999999987 37888763 2699999999999999
Q ss_pred HHH----HHHHHHHcC-CCCCCCCcchHHhhcc-ceeecCC-cccccccccccchhhhhh-cccccCCCCCCcEEEEecC
Q 007705 432 TFR----ILMSKRKEI-VSYNGGDQGFLNEVYV-WWHRLPR-RVNFLKNFWANTTLEASV-KNHLFGADPPKLYAIHYLG 503 (592)
Q Consensus 432 ~fe----~Lle~~~e~-~sy~~~DQdiLN~vF~-~w~~LP~-rYN~l~~~~~~~~~~~~~-~~~~~~~~~~~~kIIHF~G 503 (592)
+.+ ++++.+.+. .++.++|||+||.+|. +|+.||. +||++.++. ....... +...+....++++||||+|
T Consensus 170 R~~~~~~~~~~~~~~~~~~~~~~DQd~LN~~f~~~~~~Lp~~~wN~~~~~~--~~~~~~~~~~~~~~~~~~~~~iiHy~g 247 (276)
T 3tzt_A 170 REEIDPDEIFSFVEDNHMNLLLPDQDILNAMYGDRIYPLDDLIYNYDARNY--SSYLIRSKKQADLAWLMDHTVVLHFCG 247 (276)
T ss_dssp HHHCCHHHHHHHHHHC--------CHHHHHHHGGGEEEEEHHHHSEETTCH--HHHHHHTTTCCSHHHHHHHCCEEECCS
T ss_pred HhhhHHHHHHHHHHhccccccCCChhHHHHHHhCCEEECCchheeeecccc--hhhhccccchhhhhhhccCCeEEEECC
Confidence 764 455555544 3567899999999999 8999998 999987641 1111000 0000111245799999999
Q ss_pred C-CCCCccCCCCCcccCCCCcccCCchhHHHHHHHHHHHHH
Q 007705 504 L-KPWACYRDYDCNWDIGNQRVYASDVAHERWWKLHDSMDD 543 (592)
Q Consensus 504 ~-KPW~~~~~~dcnw~~~~~~~~asd~~~~~WW~vyd~~~e 543 (592)
. |||..... ..+++.||+|++...+
T Consensus 248 ~~KPW~~~~~---------------~~~~~~w~~Y~~~~~~ 273 (276)
T 3tzt_A 248 RDKPWKKNHR---------------NKFTSLYKHYMSLTKR 273 (276)
T ss_dssp SCCTTSTTCC---------------STTHHHHHHHHHHHHH
T ss_pred CCCCcCCCCC---------------CchHHHHHHHHHHHHH
Confidence 5 99986421 3578999999875544
No 4
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*
Probab=99.96 E-value=6.5e-30 Score=263.62 Aligned_cols=206 Identities=22% Similarity=0.295 Sum_probs=148.8
Q ss_pred eecChhhHHHHHHHHHHH-HHhC-CCCcEEEEECCCCCHHHHHHHHHc----CCEEEEEeeccCcc---cc-cccCCccc
Q 007705 303 LHSSEAYVCGAITLAQSL-RKTG-TKRDLVLLIDNSISIPKREALTAA----GWKIRIIKRIRNPR---AE-KKTYNEYN 372 (592)
Q Consensus 303 Ltsdd~Yl~gAlVL~~SL-r~~n-s~~dLvVLvtd~ise~~r~~L~~~----g~~Ii~V~~i~~p~---~~-~~~~~~~t 372 (592)
+++|++|+.++.|+++|| ++++ ++..++|+ +++++++.++.|++. +.++..++.-.... .. ...++..+
T Consensus 5 ~~~d~~Y~~~~~vli~Sl~l~~~~~~~~f~il-~~~ls~~~~~~L~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~~ 83 (311)
T 1g9r_A 5 FAADDNYAAYLCVAAKSVEAAHPDTEIRFHVL-DAGISEANRAAVAANLRGGGGNIRFIDVNPEDFAGFPLNIRHISITT 83 (311)
T ss_dssp EEECGGGHHHHHHHHHHHHHTCTTSCCEEEEE-ESSCCHHHHHHHHHHSGGGTTTEEEEECCGGGGTTSCCCCTTCCGGG
T ss_pred EECCHhHHHHHHHHHHHHHHHcCCCCceEEEE-ECCCCHHHHHHHHHHHHHcCCEEEEEEcCHHHHhcCccccccCCHHH
Confidence 346899999999999999 5553 34556666 567999998888874 66555443211111 11 12345679
Q ss_pred eeeeecccc-cCcceEEEEecCeeeccCchhhhCCC----CceeecC-----------------CCcceeceEEEEeCCH
Q 007705 373 YSKFRLWQL-TDYDKIIFIDADIIVLRNLDLLFHFP----QMSATGN-----------------DIWIFNSGIMVIEPSN 430 (592)
Q Consensus 373 ytKL~iw~L-tdYDRVLYLDaD~LVl~nIDeLFdlp----~iaAvpD-----------------~~~yFNSGVMVInPs~ 430 (592)
|+||+++++ .+||||||||+|+||++||++||+++ .++|++| ...||||||||+|++.
T Consensus 84 y~Rl~l~~ll~~~~kvlyLD~D~iv~~di~eL~~~~l~~~~~aav~d~~~~~~~~~~~~~~~~~~~~yfNsGv~linl~~ 163 (311)
T 1g9r_A 84 YARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVERQEGYKQKIGMADGEYYFNAGVLLINLKK 163 (311)
T ss_dssp GGGGGHHHHCCSCSCEEEECSSEEECSCCHHHHTCCCTTCSEEEEECHHHHTSTTHHHHTTCCTTSCCEEEEEEEECHHH
T ss_pred HHHHHHHHHhhhcCEEEEEcCCeEeccCHHHHhccCCCCcEEEEEeccchhhhHHHHHhcCCCCCCceEeeeeeeeeHHH
Confidence 999999995 68999999999999999999999986 3777764 2359999999999999
Q ss_pred HH----HHHHHHHHHcC-CCCCCCCcchHHhhcc-ceeecCCcccccccccccchhhhhhcc------cccCCCCCCcEE
Q 007705 431 CT----FRILMSKRKEI-VSYNGGDQGFLNEVYV-WWHRLPRRVNFLKNFWANTTLEASVKN------HLFGADPPKLYA 498 (592)
Q Consensus 431 ~~----fe~Lle~~~e~-~sy~~~DQdiLN~vF~-~w~~LP~rYN~l~~~~~~~~~~~~~~~------~~~~~~~~~~kI 498 (592)
|+ ++++++.+.+. .++.++|||+||.+|. +|..||.+||++.+...... ....+. ..+....++++|
T Consensus 164 ~r~~~~~~~~~~~~~~~~~~~~~~DQd~lN~~f~~~~~~Lp~~wN~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i 242 (311)
T 1g9r_A 164 WRRHDIFKMSSEWVEQYKDVMQYQDQDILNGLFKGGVCYANSRFNFMPTNYAFMA-NWFASRHTDPLYRDRTNTVMPVAV 242 (311)
T ss_dssp HTTSCHHHHHHHHHHHHTTTCSSHHHHHHHHHHTTSEEEECGGGSBCHHHHHTCC-----CSCCCHHHHHHHSCCSSCSE
T ss_pred HHhcchHHHHHHHHHhccCcCccCCcCHHHHHHcCCEEEcChhhccCcchhhHHh-hhcccccchhhhhHHhhccCCCEE
Confidence 85 46667766543 4578899999999999 89999999999865411000 000000 001233568899
Q ss_pred EEecCC-CCCCcc
Q 007705 499 IHYLGL-KPWACY 510 (592)
Q Consensus 499 IHF~G~-KPW~~~ 510 (592)
|||+|. |||...
T Consensus 243 iHy~g~~KPW~~~ 255 (311)
T 1g9r_A 243 SHYCGPAKPWHRD 255 (311)
T ss_dssp EECCSSCCTTSSS
T ss_pred EEeCCcCCCCCCC
Confidence 999995 999864
No 5
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=61.22 E-value=17 Score=34.05 Aligned_cols=99 Identities=10% Similarity=0.131 Sum_probs=49.6
Q ss_pred EEEEEEeecChhhHHHHHHHHHHHHHhC-CCCcEEEEECCCCCHHHHHHHHHc--CCEEEEEeeccCcccccccCCccce
Q 007705 297 EAYATVLHSSEAYVCGAITLAQSLRKTG-TKRDLVLLIDNSISIPKREALTAA--GWKIRIIKRIRNPRAEKKTYNEYNY 373 (592)
Q Consensus 297 ~AYVTlLtsdd~Yl~gAlVL~~SLr~~n-s~~dLvVLvtd~ise~~r~~L~~~--g~~Ii~V~~i~~p~~~~~~~~~~ty 373 (592)
.+.++..+....|+.. ++.||.... +.+. +|+++++-++.+.+.+++. ...+..+..-.........-.....
T Consensus 3 vSViIp~yn~~~~l~~---~l~Sl~~q~~~~~e-iivvDd~S~d~t~~~~~~~~~~~~i~~i~~~~~~~~~~~~n~G~~~ 78 (255)
T 1qg8_A 3 VSVIMTSYNKSDYVAK---SISSILSQTFSDFE-LFIMDDNSNEETLNVIRPFLNDNRVRFYQSDISGVKERTEKTRYAA 78 (255)
T ss_dssp EEEEEEESSCTTTHHH---HHHHHHTCSCCCEE-EEEEECSCCHHHHHHHGGGGGSTTEEEEECCCCSHHHHHSSCHHHH
T ss_pred EEEEEEcCCCHHHHHH---HHHHHHhccCCceE-EEEEECCCCchHHHHHHHHhhcCCEEEEecccccccccccccCHHH
Confidence 4445544545566554 566776532 3333 4456677777777777765 2233222211000000000000111
Q ss_pred eeeecccccCcceEEEEecCeeeccC
Q 007705 374 SKFRLWQLTDYDKIIFIDADIIVLRN 399 (592)
Q Consensus 374 tKL~iw~LtdYDRVLYLDaD~LVl~n 399 (592)
.+-...+....|-|++||+|.++..+
T Consensus 79 a~N~gi~~a~g~~i~~lD~Dd~~~~~ 104 (255)
T 1qg8_A 79 LINQAIEMAEGEYITYATDDNIYMPD 104 (255)
T ss_dssp HHHHHHHHCCCSEEEEEETTEEECTT
T ss_pred HHHHHHHHcCCCEEEEeCCCCccChH
Confidence 22233344578999999999999765
No 6
>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A*
Probab=48.93 E-value=32 Score=35.98 Aligned_cols=96 Identities=16% Similarity=0.120 Sum_probs=53.9
Q ss_pred CCCEEEEEEeecChhhHHHHHHHHHHHH-HhCCCCcEEEEECCCCCHHHHHHHHHcCCEEEEEe--eccCcccccccCCc
Q 007705 294 AKREAYATVLHSSEAYVCGAITLAQSLR-KTGTKRDLVLLIDNSISIPKREALTAAGWKIRIIK--RIRNPRAEKKTYNE 370 (592)
Q Consensus 294 ~~r~AYVTlLtsdd~Yl~gAlVL~~SLr-~~ns~~dLvVLvtd~ise~~r~~L~~~g~~Ii~V~--~i~~p~~~~~~~~~ 370 (592)
..+...|.-.++...++..++-.+.++. +......+ |+++|+-++.+.+.+++.+.+++... .+..+.. . .
T Consensus 93 ~p~vSVVIP~yNe~~~l~~~l~sl~~~l~~~~~~~EI-IVVDDgStD~T~~i~~~~~~~v~~~~~~~i~~~~n-~----G 166 (387)
T 3f1y_A 93 GLTVSAVLPSRNVADTVGGIIDEIHALNERAPLIDQI-LVVDADSEDGTAGVAASHGAEVYSENELMSGYGDA-H----G 166 (387)
T ss_dssp TCCEEEEEEESSCTTTHHHHHHHHHHHHHHSCCCSEE-EEEECSCSSSHHHHHHHTTCEEEEGGGTTGGGCSC-C----S
T ss_pred CCeEEEEEEcCCCHHHHHHHHHHHHHHHhcCCCCeEE-EEEcCcCCccHHHHHHHhCchhcccceeEecCCcc-C----C
Confidence 3455566555555677776665555543 33344544 45566666677788888888765422 1111110 0 0
Q ss_pred cceeeeecccccCcceEEEEecCee
Q 007705 371 YNYSKFRLWQLTDYDKIIFIDADII 395 (592)
Q Consensus 371 ~tytKL~iw~LtdYDRVLYLDaD~L 395 (592)
.....-..+....+|-|+++|+|..
T Consensus 167 ~g~A~n~G~~~A~gd~i~~lDaD~~ 191 (387)
T 3f1y_A 167 KGDAMWRALSVTRGDLVLYIDADTR 191 (387)
T ss_dssp HHHHHHHHTTTCCSSEEEECCTTCS
T ss_pred HHHHHHHHHHhcCCCEEEEEcCCCC
Confidence 1111222334457899999999998
No 7
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=43.97 E-value=9.6 Score=35.45 Aligned_cols=92 Identities=15% Similarity=0.121 Sum_probs=46.8
Q ss_pred CCEEEEEEeecChhhHHHHHHHHHHHHHh-CCCCcEEEEECCCCCHHHHHHHHHc---CCEEEEEeeccCcccccccCCc
Q 007705 295 KREAYATVLHSSEAYVCGAITLAQSLRKT-GTKRDLVLLIDNSISIPKREALTAA---GWKIRIIKRIRNPRAEKKTYNE 370 (592)
Q Consensus 295 ~r~AYVTlLtsdd~Yl~gAlVL~~SLr~~-ns~~dLvVLvtd~ise~~r~~L~~~---g~~Ii~V~~i~~p~~~~~~~~~ 370 (592)
.+...++..+....|+. -++.||... .+...++ +++++-++.+.+.+++. ...++.+.. +...
T Consensus 5 p~vsViIp~yn~~~~l~---~~l~Sl~~q~~~~~eiI-vvDd~S~d~t~~~~~~~~~~~~~i~~i~~---~n~G------ 71 (240)
T 3bcv_A 5 PKVSVIVPIYNVEKYLD---QCVQALLAQTLSDIEII-LIDDESPDNCPKICDDYAAQYPNIKVIHK---KNAG------ 71 (240)
T ss_dssp CSEEEEEEESSCTTTHH---HHHHHHHTCSSSSEEEE-EEECCCSSSHHHHHHHHHHHCSSEEEEEC---CCCC------
T ss_pred CcEEEEEecCCCHHHHH---HHHHHHHhCcCCCeEEE-EEECCCCcCHHHHHHHHHhhCCCEEEEEC---CCCC------
Confidence 34556665555566765 455677643 2333444 45554444444444442 333333321 1110
Q ss_pred cceeeeecccccCcceEEEEecCeeeccC
Q 007705 371 YNYSKFRLWQLTDYDKIIFIDADIIVLRN 399 (592)
Q Consensus 371 ~tytKL~iw~LtdYDRVLYLDaD~LVl~n 399 (592)
....+=...+....|-|++||+|.++..+
T Consensus 72 ~~~a~N~g~~~a~g~~i~~lD~Dd~~~~~ 100 (240)
T 3bcv_A 72 LGMACNSGLDVATGEYVAFCDSDDYVDSD 100 (240)
T ss_dssp HHHHHHHHHHHCCSSEEEECCTTCCCCTT
T ss_pred hHHHHHHHHHHcCCCEEEEECCCCcCCHH
Confidence 01111123334467899999999988665
No 8
>2p6w_A VP54, putative glycosyltransferase (mannosyltransferase in glycosylating the PBCV-1 major...; HET: FLC; 1.60A {Paramecium bursaria chlorella virus 1} PDB: 2p72_A* 2p73_A*
Probab=42.08 E-value=31 Score=33.57 Aligned_cols=56 Identities=9% Similarity=0.232 Sum_probs=32.6
Q ss_pred ccccCcceEEEEecCeeecc-----CchhhhCCCCceee----cC-CC--cceeceEEEEeCCHHHHH
Q 007705 379 WQLTDYDKIIFIDADIIVLR-----NLDLLFHFPQMSAT----GN-DI--WIFNSGIMVIEPSNCTFR 434 (592)
Q Consensus 379 w~LtdYDRVLYLDaD~LVl~-----nIDeLFdlp~iaAv----pD-~~--~yFNSGVMVInPs~~~fe 434 (592)
-...+.+-+-|||+|++|++ +|..-.++..--.+ .+ .. -..|+|++++..+.-...
T Consensus 68 ~khPeAEWfWWLDsDAlIMDmnf~lPLe~yldl~~~NlvvHGw~e~~~~~~~lNtGvfL~~~~~~~ir 135 (213)
T 2p6w_A 68 EKFPSTEWFLWLDSDVYVNPKNKNKPITSFIDLSDPNILYHTFHEAPWGSYPINTGVKFVHKDALEIE 135 (213)
T ss_dssp HHCTTCSEEEEECTTEEECGGGTTSCGGGTCCCCCTTCCEEEECCTTTSSSSCCTTEEEEEGGGHHHH
T ss_pred HHCCCceEEEEecCCceeecCCCCCcHHHccccccCceeeccccccccccccccceeeeecccchhhh
Confidence 33467899999999999983 22222222211111 11 11 257999999876654433
No 9
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=34.83 E-value=25 Score=38.45 Aligned_cols=102 Identities=16% Similarity=0.152 Sum_probs=51.1
Q ss_pred CCCCEEEEEEeecChhhHHHHHHHHHHHHHhCCC-Cc-EEEEECCCCCHHH-HHHHHHc---CCEEEEEeeccCcccccc
Q 007705 293 IAKREAYATVLHSSEAYVCGAITLAQSLRKTGTK-RD-LVLLIDNSISIPK-REALTAA---GWKIRIIKRIRNPRAEKK 366 (592)
Q Consensus 293 ~~~r~AYVTlLtsdd~Yl~gAlVL~~SLr~~ns~-~d-LvVLvtd~ise~~-r~~L~~~---g~~Ii~V~~i~~p~~~~~ 366 (592)
..++...|+..+ |+. +....-++.||...... .. =+|+++++-++.+ .+.|+++ ...++.+. .+...
T Consensus 110 ~~P~vSVIIp~y-Ne~-~~~L~~~L~Sll~qt~~~~~~EIIVVDDgS~D~tl~~~l~~~~~~~~~v~vi~---~~~n~-- 182 (570)
T 2d7i_A 110 TLPNTSIIIPFH-NEG-WSSLLRTVHSVLNRSPPELVAEIVLVDDFSDREHLKKPLEDYMALFPSVRILR---TKKRE-- 182 (570)
T ss_dssp SCCCEEEEEEES-SCC-HHHHHHHHHHHHHHSCGGGEEEEEEEECSCCCGGGTHHHHHHHTTSTTEEEEE---CSSCC--
T ss_pred CCCCeEEEEEEC-CCC-HHHHHHHHHHHHhcCCccCcEEEEEEECCCCcHHHHHHHHHHHHhCCeEEEEE---CCCCC--
Confidence 345666666555 332 34455677888765433 22 2455555544444 4444442 22232222 11100
Q ss_pred cCCccceeeeecccccCcceEEEEecCeeeccC-chhhh
Q 007705 367 TYNEYNYSKFRLWQLTDYDKIIFIDADIIVLRN-LDLLF 404 (592)
Q Consensus 367 ~~~~~tytKL~iw~LtdYDRVLYLDaD~LVl~n-IDeLF 404 (592)
...-.+-...+....|-|+|||+|+++..+ |..|.
T Consensus 183 ---G~~~A~N~G~~~A~gd~i~fLD~D~~~~p~~L~~ll 218 (570)
T 2d7i_A 183 ---GLIRTRMLGASVATGDVITFLDSHCEANVNWLPPLL 218 (570)
T ss_dssp ---CHHHHHHHHHHHCCSSEEEECCSSEEECTTCSHHHH
T ss_pred ---CHHHHHHHHHHhcCCCEEEEEcCCccccccHHHHHH
Confidence 011122223334467899999999999655 44444
No 10
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*
Probab=34.60 E-value=63 Score=33.50 Aligned_cols=90 Identities=10% Similarity=0.102 Sum_probs=50.4
Q ss_pred HHHHHHHHHHhCCC--CcEEEEECCCCCHHHHHHHHHcCCEEEEEe--eccC-cccccccCCccceee---------eec
Q 007705 313 AITLAQSLRKTGTK--RDLVLLIDNSISIPKREALTAAGWKIRIIK--RIRN-PRAEKKTYNEYNYSK---------FRL 378 (592)
Q Consensus 313 AlVL~~SLr~~ns~--~dLvVLvtd~ise~~r~~L~~~g~~Ii~V~--~i~~-p~~~~~~~~~~tytK---------L~i 378 (592)
+.-++.||++.... ...+++.+|+-.+++++.+++.+.++..+. .+.. +...+ ...-..|.| =.+
T Consensus 16 l~~~L~sL~~~~p~~~~~~iivsdDgs~~~~~~vi~~~~~~I~~~~~~d~~~~~~~~~-N~g~~~y~~ia~h~~~al~~v 94 (343)
T 1fo8_A 16 VRRCLDKLLHYRPSAELFPIIVSQDCGHEETAQVIASYGSAVTHIRQPDLSNIAVQPD-HRKFQGYYKIARHYRWALGQI 94 (343)
T ss_dssp HHHHHHHHHHHCSCTTTSCEEEEECTTCHHHHHHHHTTGGGSEEEECSCCCCCCCCTT-CGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcCCcEEEEEECCCCHHHHHHHHHcCCceEEEEcCCccccccchh-hcCcccchhHhHHHHHHHHHH
Confidence 56777888887532 345666777778888888888764333221 1100 00000 000000111 123
Q ss_pred ccccCcceEEEEecCeeeccCchhh
Q 007705 379 WQLTDYDKIIFIDADIIVLRNLDLL 403 (592)
Q Consensus 379 w~LtdYDRVLYLDaD~LVl~nIDeL 403 (592)
++...+++||+||-|+++-.+.=+-
T Consensus 95 f~~~~~~~vIiLEDDl~~spdF~~y 119 (343)
T 1fo8_A 95 FHNFNYPAAVVVEDDLEVAPDFFEY 119 (343)
T ss_dssp HTTSCCSEEEEEETTEEECTTHHHH
T ss_pred HHhccCCEEEEEcCCCeECHHHHHH
Confidence 4444799999999999998775333
No 11
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=32.08 E-value=65 Score=33.67 Aligned_cols=102 Identities=13% Similarity=0.149 Sum_probs=50.3
Q ss_pred CCCCCEEEEEEeecCh-hhHHHHHHHHHHHHHhCCCC-cE-EEEECCCCCH-HHHHHHHHc---CC-EEEEEeeccCccc
Q 007705 292 KIAKREAYATVLHSSE-AYVCGAITLAQSLRKTGTKR-DL-VLLIDNSISI-PKREALTAA---GW-KIRIIKRIRNPRA 363 (592)
Q Consensus 292 ~~~~r~AYVTlLtsdd-~Yl~gAlVL~~SLr~~ns~~-dL-vVLvtd~ise-~~r~~L~~~---g~-~Ii~V~~i~~p~~ 363 (592)
.+.++...|+..+... .++. -++.||....... .+ +|+++++-++ ++.+.|+++ .. .++.|.. +..
T Consensus 26 ~~~p~vSVIIp~yN~~~~~l~---~~l~Sl~~q~~~~~~~EIIvVDd~S~d~~t~~~l~~~~~~~~~~v~vi~~---~~n 99 (472)
T 1xhb_A 26 DNLPTTSVVIVFHNEAWSTLL---RTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLESYVKKLKVPVHVIRM---EQR 99 (472)
T ss_dssp SCCCCEEEEEEESSCCHHHHH---HHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHHHHHHSSSSCEEEEEC---SSC
T ss_pred cCCCCeEEEEEeCCCCHHHHH---HHHHHHHhcCcHhHceEEEEEECCCCcHHHHHHHHHHHHHCCCcEEEEEC---CCC
Confidence 3455677776655443 4544 4677887654322 12 4445544333 344444432 22 3333321 110
Q ss_pred ccccCCccceeeeecccccCcceEEEEecCeeeccC-chhhh
Q 007705 364 EKKTYNEYNYSKFRLWQLTDYDKIIFIDADIIVLRN-LDLLF 404 (592)
Q Consensus 364 ~~~~~~~~tytKL~iw~LtdYDRVLYLDaD~LVl~n-IDeLF 404 (592)
. + ..-.+-...+....|-|++||+|+++..+ |..|.
T Consensus 100 ~-G----~~~a~N~g~~~A~gd~i~flD~D~~~~p~~L~~ll 136 (472)
T 1xhb_A 100 S-G----LIRARLKGAAVSRGQVITFLDAHCECTAGWLEPLL 136 (472)
T ss_dssp C-C----HHHHHHHHHHHCCSSEEEEEESSEEECTTCHHHHH
T ss_pred C-C----hHHHHHHHHHhccCCeEEEECCCeEeCccHHHHHH
Confidence 0 0 11112223334567999999999998765 44444
No 12
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=30.59 E-value=81 Score=31.49 Aligned_cols=102 Identities=14% Similarity=0.154 Sum_probs=56.3
Q ss_pred CCCEEEEEEeecChhhHHHHHHHHHHHHHhC-CC-CcEEEEECCCCCHHHHHHHHHcCCEEEE-Eeecc-CcccccccCC
Q 007705 294 AKREAYATVLHSSEAYVCGAITLAQSLRKTG-TK-RDLVLLIDNSISIPKREALTAAGWKIRI-IKRIR-NPRAEKKTYN 369 (592)
Q Consensus 294 ~~r~AYVTlLtsdd~Yl~gAlVL~~SLr~~n-s~-~dLvVLvtd~ise~~r~~L~~~g~~Ii~-V~~i~-~p~~~~~~~~ 369 (592)
..+...++-.+....|+. -++.||.... +. .. +|+++++-++.+.+.+++.+.++.. +..+. .+.. .+
T Consensus 47 ~~~vSViIp~yN~~~~l~---~~l~sl~~q~~~~~~e-iivVDdgS~D~t~~~~~~~~~~~~~~~~~~~~~~~n-~G--- 118 (329)
T 3ckj_A 47 GRTISVVLPALDEEDTIG---SVIDSISPLVDGLVDE-LIVLDSGSTDDTEIRAVAAGARVVSREQALPEVPIR-PG--- 118 (329)
T ss_dssp TCCEEEEEEESSCTTTHH---HHHHHHGGGBTTTBSE-EEEEECSCCSSHHHHHHHTTCEEEEHHHHCTTSCCC-CS---
T ss_pred CCcEEEEEeeCCCHHHHH---HHHHHHHHhhCCCCcE-EEEEeCCCCchHHHHHHHhhhhhccceeeeccCCCC-CC---
Confidence 345666665555556655 4566776543 22 34 4456666666778888888877543 22221 1110 00
Q ss_pred ccceeeeecccccCcceEEEEecCee-eccC-chhhh
Q 007705 370 EYNYSKFRLWQLTDYDKIIFIDADII-VLRN-LDLLF 404 (592)
Q Consensus 370 ~~tytKL~iw~LtdYDRVLYLDaD~L-Vl~n-IDeLF 404 (592)
....+-...+....|-|++||+|.+ +..+ |..+.
T Consensus 119 -~~~a~n~g~~~a~gd~i~~lD~D~~~~~p~~l~~l~ 154 (329)
T 3ckj_A 119 -KGEALWRSLAASRGDIVVFVDSDLINPHPMFVPWLV 154 (329)
T ss_dssp -HHHHHHHHHHHCCCSEEEECCTTEESCCTTHHHHHH
T ss_pred -HHHHHHHHHHhCCCCEEEEECCCCCCcChHHHHHHH
Confidence 1111112333456799999999999 6544 44443
No 13
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=29.22 E-value=99 Score=33.52 Aligned_cols=96 Identities=10% Similarity=0.024 Sum_probs=50.2
Q ss_pred CCCEEEEEEeecChhhHHHHHHHHHHHHHhCCCCcE-EEEECCCCCHHHHHHHHHcC--CEEEEEeeccCcccccccCCc
Q 007705 294 AKREAYATVLHSSEAYVCGAITLAQSLRKTGTKRDL-VLLIDNSISIPKREALTAAG--WKIRIIKRIRNPRAEKKTYNE 370 (592)
Q Consensus 294 ~~r~AYVTlLtsdd~Yl~gAlVL~~SLr~~ns~~dL-vVLvtd~ise~~r~~L~~~g--~~Ii~V~~i~~p~~~~~~~~~ 370 (592)
..+...++..+.... ...-++.||.......++ +++++++-++.+.+.+++.. ..+..+..-.....
T Consensus 92 ~p~vsviIp~~n~~~---~l~~~l~sl~~q~~~~~~eiivvDd~s~d~t~~~~~~~~~~~~i~~i~~~~~~~g------- 161 (625)
T 2z86_A 92 IDGLSIVIPTYNRAK---ILAITLACLCNQKTIYDYEVIVADDGSKENIEEIVREFESLLNIKYVRQKDYGYQ------- 161 (625)
T ss_dssp CCCEEEEEEESSCHH---HHHHHHHHHHTCCCSSCEEEEEEEESCSSCHHHHHHTTTTTSCEEEEEECCCSCC-------
T ss_pred CCcEEEEEecCCcHH---HHHHHHHHHHhhccCCCeEEEEEeCCCchhHHHHHHHhhhcCCeEEEEeCCCCcc-------
Confidence 356666665554433 344567888765432233 34555555555666676642 12222221111100
Q ss_pred cceeeeecccccCcceEEEEecCeeeccC
Q 007705 371 YNYSKFRLWQLTDYDKIIFIDADIIVLRN 399 (592)
Q Consensus 371 ~tytKL~iw~LtdYDRVLYLDaD~LVl~n 399 (592)
....+-...+....|-|++||+|+++..+
T Consensus 162 ~~~a~N~g~~~a~g~~v~~lD~D~~~~~~ 190 (625)
T 2z86_A 162 LCAVRNLGLRAAKYNYVAILDCDMAPNPL 190 (625)
T ss_dssp HHHHHHHHHHHCCSSEEEEECTTEEECTT
T ss_pred hhHHHHHHHHhCCcCEEEEECCCCCCCHH
Confidence 01111123344578999999999999665
No 14
>1o7q_A N-acetyllactosaminide alpha-1,3- galactosyltransferase; 3-galactosyltransferase-UDP complex, glycosyltransferase, glycoprotein, transmembrane; HET: GAL NAG UDP; 1.3A {Bos taurus} SCOP: c.68.1.9 PDB: 1gwv_A* 1gx0_A* 1gww_A* 1k4v_A* 1gx4_A* 2jco_A 1g8o_A* 1fg5_N* 1g93_A* 2wgz_A* 1o7o_A* 2vs4_A* 2jck_A* 2jcl_A 2vfz_A* 2vs3_A* 1vzu_A* 1vzx_A* 1vzt_A* 2jcj_A* ...
Probab=27.90 E-value=53 Score=33.54 Aligned_cols=168 Identities=11% Similarity=0.174 Sum_probs=85.4
Q ss_pred CCEEEEEEeecChhhH-HHHHHHHHHHHHh---CCCCcEEEEECCC--CCHHHHHHHHHcC-CEEEEEeeccCccccccc
Q 007705 295 KREAYATVLHSSEAYV-CGAITLAQSLRKT---GTKRDLVLLIDNS--ISIPKREALTAAG-WKIRIIKRIRNPRAEKKT 367 (592)
Q Consensus 295 ~r~AYVTlLtsdd~Yl-~gAlVL~~SLr~~---ns~~dLvVLvtd~--ise~~r~~L~~~g-~~Ii~V~~i~~p~~~~~~ 367 (592)
-+.+...+.+ ..|. .-.--.+.|-.++ |-+...+|+.++. ++.- ..| -+-+.|-.+.. ...
T Consensus 48 ~tIGl~vfa~--GkY~~~fl~~Fl~SAEk~Fm~g~~v~YYVFTD~~~~~p~v------~l~~~r~~~V~~i~~----~~~ 115 (289)
T 1o7q_A 48 ITVGLTVFAV--GRYIEHYLEEFLTSANKHFMVGHPVIFYIMVDDVSRMPLI------ELGPLRSFKVFKIKP----EKR 115 (289)
T ss_dssp CCEEEEEEEC--TTHHHHHHHHHHHHHHHHBSTTSCEEEEEEESCGGGCCCC------CCCTTEEEEEEECCC----CSS
T ss_pred CeEEEEEEEe--cccHHHHHHHHHHHHHHhccCCCeEEEEEEeCChhhCCcc------ccCCCCeEEEEEecc----ccC
Confidence 3454444333 3788 6677777777765 4444555665531 1110 011 11112222211 011
Q ss_pred CCccceeeeeccc-------ccCcceEEEEecCeeeccCchhhhCCCCcee------------------------ec-CC
Q 007705 368 YNEYNYSKFRLWQ-------LTDYDKIIFIDADIIVLRNLDLLFHFPQMSA------------------------TG-ND 415 (592)
Q Consensus 368 ~~~~tytKL~iw~-------LtdYDRVLYLDaD~LVl~nIDeLFdlp~iaA------------------------vp-D~ 415 (592)
+...+..|+.++. +.++|-+.++|+|+++.+++..=.--+.++. .| +.
T Consensus 116 W~d~sm~Rm~~i~~~~~~~~~~evDYLf~~dvd~~F~~~vG~E~Lg~lv~~lHp~~y~~~~~~fpYERrp~S~AyIp~~e 195 (289)
T 1o7q_A 116 WQDISMMRMKTIGEHIVAHIQHEVDFLFCMDVDQVFQDKFGVETLGESVAQLQAWWYKADPNDFTYERRKESAAYIPFGE 195 (289)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHCSEEEEECSSEEECSCBCGGGCSSEEEEECTTTTTSCGGGSCCCCCTTSTTCCCTTC
T ss_pred CchhHHHHHHHHHHHHHHHHhhcCCEEEEeeCCcEeeccCCHHHHHHHHHccCHHHhCCCCCCCCCCCCcCceeeecCCC
Confidence 1122444444332 2468999999999999998743111111110 11 12
Q ss_pred C-cceeceEEEEeCCHH------HHHHHHHHHHcCCCCCCCCcchHHhhcc---ceeecCCcccccccc
Q 007705 416 I-WIFNSGIMVIEPSNC------TFRILMSKRKEIVSYNGGDQGFLNEVYV---WWHRLPRRVNFLKNF 474 (592)
Q Consensus 416 ~-~yFNSGVMVInPs~~------~fe~Lle~~~e~~sy~~~DQdiLN~vF~---~w~~LP~rYN~l~~~ 474 (592)
| .|+-+|++-=.+..- -.+.|++-..+.-.-.+.|-.-||.+|- ..+.||+.|+...++
T Consensus 196 GdfYY~Ga~fGGt~~~vl~l~~~c~~~i~~D~~n~I~A~wHDESHLNKYf~~~KPtKvLSPEY~wd~~~ 264 (289)
T 1o7q_A 196 GDFYYHAAIFGGTPTQVLNITQECFKGILKDKKNDIEAQWHDESHLNKYFLLNKPTKILSPEYCWDYHI 264 (289)
T ss_dssp CSCCEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTCCCTTTHHHHHHHHHHHSCCSEEECGGGSBCGGG
T ss_pred CCEEEEceeeCCcHHHHHHHHHHHHHHHHHHHhCCeEEEecchhhhhHHHhhcCCCEEECHHHCCCccc
Confidence 2 377777665444321 1122222222222346799999999975 356799999876543
No 15
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=22.32 E-value=1.4e+02 Score=31.41 Aligned_cols=100 Identities=19% Similarity=0.253 Sum_probs=47.8
Q ss_pred CCCCEEEEEEeecChh-hHHHHHHHHHHHHHhCCCC---cEEEEECCCCCHHHHHHHHHcCCEEEEEeeccCcccccccC
Q 007705 293 IAKREAYATVLHSSEA-YVCGAITLAQSLRKTGTKR---DLVLLIDNSISIPKREALTAAGWKIRIIKRIRNPRAEKKTY 368 (592)
Q Consensus 293 ~~~r~AYVTlLtsdd~-Yl~gAlVL~~SLr~~ns~~---dLvVLvtd~ise~~r~~L~~~g~~Ii~V~~i~~p~~~~~~~ 368 (592)
..++...|+..+.... ++ .-++.||....... . +|+++++-++.+...+.+....++.+. .+...
T Consensus 64 ~~p~vSVIIp~yN~~~~~L---~~~l~Sl~~q~~~~~~~E-IIvVDDgS~D~t~~~~~~~~~~v~vi~---~~~n~---- 132 (501)
T 2ffu_A 64 DLPATSVVITFHNEARSAL---LRTVVSVLKKSPPHLIKE-IILVDDYSNDPEDGALLGKIEKVRVLR---NDRRE---- 132 (501)
T ss_dssp SCCCEEEEEEESSCCHHHH---HHHHHHHHHHSCGGGEEE-EEEEECSCSCTHHHHGGGGBTTEEEEE---CSSCC----
T ss_pred CCCCEEEEEEeCcCcHHHH---HHHHHHHHhhCchhhcee-EEEEECCCCchHHHHHHhcCCCEEEEE---CCCCc----
Confidence 4456666665553332 44 45567777654322 3 445555444433222222222222222 11100
Q ss_pred CccceeeeecccccCcceEEEEecCeeeccC-chhhh
Q 007705 369 NEYNYSKFRLWQLTDYDKIIFIDADIIVLRN-LDLLF 404 (592)
Q Consensus 369 ~~~tytKL~iw~LtdYDRVLYLDaD~LVl~n-IDeLF 404 (592)
.....+-...+....|-|++||+|+.+..+ |..|.
T Consensus 133 -G~~~A~N~G~~~A~gd~i~flD~D~~~~p~~L~~ll 168 (501)
T 2ffu_A 133 -GLMRSRVRGADAAQAKVLTFLDSHCECNEHWLEPLL 168 (501)
T ss_dssp -HHHHHHHHHHHHCCSSEEEECCSSEEECTTCHHHHH
T ss_pred -CHHHHHHHHHHhcCCCEEEEECCCcccCccHHHHHH
Confidence 011122233334567999999999998765 34444
Done!