Query 007706
Match_columns 592
No_of_seqs 243 out of 1609
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 08:28:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007706.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007706hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l4g_B Phenylalanyl-tRNA synth 100.0 1E-138 3E-143 1166.1 61.9 585 1-592 1-589 (589)
2 3pco_B Phenylalanyl-tRNA synth 100.0 9E-105 3E-109 912.6 39.7 480 60-592 154-690 (795)
3 2rhq_B Phenylalanyl-tRNA synth 100.0 8E-100 3E-104 874.5 47.7 475 60-592 156-691 (795)
4 1b7y_B Phers, protein (phenyla 100.0 3.3E-98 1E-102 857.4 45.5 464 60-592 152-678 (785)
5 2cxi_A Phenylalanyl-tRNA synth 100.0 2.6E-77 8.8E-82 627.2 31.3 341 1-379 1-348 (348)
6 3ica_A Phenylalanyl-tRNA synth 100.0 9.4E-44 3.2E-48 350.1 16.8 190 394-592 5-213 (213)
7 3ig2_A Phenylalanyl-tRNA synth 100.0 8.4E-44 2.9E-48 350.5 14.4 191 393-592 4-213 (213)
8 2du3_A O-phosphoseryl-tRNA syn 100.0 2.1E-40 7.3E-45 360.1 17.3 227 357-591 10-333 (534)
9 2rhq_A Phenylalanyl-tRNA synth 100.0 4.3E-39 1.5E-43 331.5 21.5 213 365-591 21-262 (294)
10 2du7_A O-phosphoseryl-tRNA syn 100.0 1.2E-31 4.2E-36 291.0 18.8 208 373-591 36-337 (549)
11 2odr_B Phosphoseryl-tRNA synth 100.0 5.5E-31 1.9E-35 287.1 18.4 193 391-591 63-344 (648)
12 2odr_D Phosphoseryl-tRNA synth 100.0 6.2E-31 2.1E-35 287.0 18.8 202 382-591 50-344 (685)
13 2odr_A Phosphoseryl-tRNA synth 100.0 5.8E-31 2E-35 287.0 18.5 203 381-591 49-344 (665)
14 2odr_C Phosphoseryl-tRNA synth 100.0 7.3E-31 2.5E-35 287.0 18.8 203 381-591 49-344 (701)
15 1b7y_A Phers, protein (phenyla 100.0 2.5E-29 8.7E-34 262.9 21.5 201 380-591 84-322 (350)
16 3qtc_A Pyrrolysyl-tRNA synthet 100.0 1.6E-29 5.4E-34 260.1 19.4 181 391-591 75-263 (290)
17 3pco_A Phenylalanyl-tRNA synth 100.0 2.6E-29 8.8E-34 259.9 14.8 195 379-591 89-302 (327)
18 3l4g_A Phenylalanyl-tRNA synth 100.0 2.1E-28 7.1E-33 265.1 19.4 208 375-591 208-464 (508)
19 3cmq_A Phenylalanyl-tRNA synth 99.9 4.2E-26 1.4E-30 244.2 14.0 195 379-591 27-283 (415)
20 3dsq_A Pyrrolysyl-tRNA synthet 99.9 3.7E-25 1.3E-29 226.7 15.8 187 391-591 69-260 (288)
21 3hj7_A TRNA(Ile)-lysidine synt 97.7 6.7E-05 2.3E-09 68.1 7.0 83 163-255 43-126 (142)
22 3net_A Histidyl-tRNA synthetas 97.6 0.0005 1.7E-08 74.6 13.2 148 377-527 5-179 (465)
23 1z7m_A ATP phosphoribosyltrans 97.5 0.00089 3.1E-08 69.8 13.5 130 394-526 38-173 (344)
24 3od1_A ATP phosphoribosyltrans 97.2 0.0032 1.1E-07 66.9 13.9 129 395-526 27-159 (400)
25 1wu7_A Histidyl-tRNA synthetas 97.2 0.0026 8.9E-08 68.2 13.3 130 394-526 22-155 (434)
26 3rac_A Histidine-tRNA ligase; 97.2 0.0026 9.1E-08 66.9 12.5 130 394-526 39-180 (373)
27 1h4v_B Histidyl-tRNA synthetas 97.1 0.0052 1.8E-07 65.5 15.0 130 394-526 19-157 (421)
28 4e51_A Histidine--tRNA ligase; 97.0 0.0072 2.5E-07 65.5 14.6 133 395-527 49-187 (467)
29 3lc0_A Histidyl-tRNA synthetas 96.9 0.0043 1.5E-07 67.0 12.0 127 395-525 46-178 (456)
30 1qe0_A Histidyl-tRNA synthetas 96.9 0.0028 9.6E-08 67.6 10.0 132 394-527 18-158 (420)
31 1htt_A Histidyl-tRNA synthetas 96.8 0.0079 2.7E-07 64.1 12.8 131 394-525 20-156 (423)
32 1nnh_A Asparaginyl-tRNA synthe 96.6 0.046 1.6E-06 55.5 15.7 184 395-591 18-268 (294)
33 4g84_A Histidine--tRNA ligase, 96.5 0.022 7.5E-07 61.4 13.6 128 395-527 31-164 (464)
34 4g85_A Histidine-tRNA ligase, 96.3 0.026 8.8E-07 61.9 13.1 128 395-527 84-217 (517)
35 2i4l_A Proline-tRNA ligase; al 96.2 0.015 5.1E-07 62.8 9.8 130 394-526 69-211 (458)
36 1nyr_A Threonyl-tRNA synthetas 96.1 0.015 5.3E-07 65.5 9.9 131 394-526 273-416 (645)
37 3a32_A Probable threonyl-tRNA 95.8 0.036 1.2E-06 60.0 11.1 129 394-525 51-195 (471)
38 2j3l_A Prolyl-tRNA synthetase; 95.7 0.03 1E-06 62.1 10.0 131 394-526 49-191 (572)
39 2cxi_A Phenylalanyl-tRNA synth 95.7 0.022 7.4E-07 59.3 8.1 66 3-90 282-347 (348)
40 2dq3_A Seryl-tRNA synthetase; 95.7 0.17 5.8E-06 54.0 15.2 129 394-526 174-316 (425)
41 1evl_A Threonyl-tRNA synthetas 95.4 0.035 1.2E-06 58.7 8.7 152 372-526 5-173 (401)
42 1ses_A Seryl-tRNA synthetase; 95.3 0.082 2.8E-06 56.4 11.1 129 394-526 168-312 (421)
43 1nj8_A Proline-tRNA synthetase 94.9 0.092 3.1E-06 56.6 10.3 133 394-527 40-189 (459)
44 2dq0_A Seryl-tRNA synthetase; 94.9 0.22 7.5E-06 53.6 13.1 127 395-526 196-337 (455)
45 3uh0_A Threonyl-tRNA synthetas 94.6 0.21 7E-06 53.9 12.1 132 394-526 66-212 (460)
46 3l4g_B Phenylalanyl-tRNA synth 94.2 0.066 2.2E-06 59.6 7.4 70 3-92 306-375 (589)
47 1qf6_A THRRS, threonyl-tRNA sy 94.2 0.048 1.7E-06 61.4 6.2 131 394-526 273-414 (642)
48 1wle_A Seryl-tRNA synthetase; 94.1 0.48 1.6E-05 51.5 13.7 131 395-526 222-368 (501)
49 3err_A Fusion protein of micro 94.1 0.71 2.4E-05 50.6 15.1 128 395-526 278-421 (536)
50 3vbb_A Seryl-tRNA synthetase, 94.0 0.46 1.6E-05 51.7 13.3 132 395-526 204-358 (522)
51 3pco_B Phenylalanyl-tRNA synth 93.8 0.1 3.6E-06 59.9 8.0 69 2-92 404-472 (795)
52 2rhq_B Phenylalanyl-tRNA synth 93.8 0.11 3.7E-06 59.9 8.2 70 3-94 408-477 (795)
53 3lss_A Seryl-tRNA synthetase; 93.7 0.65 2.2E-05 50.1 13.6 130 395-526 211-356 (484)
54 1b7y_B Phers, protein (phenyla 93.7 0.11 3.9E-06 59.5 8.1 68 3-92 403-470 (785)
55 1hc7_A Prolyl-tRNA synthetase; 93.5 0.23 7.9E-06 53.8 9.8 132 394-526 46-193 (477)
56 1usy_A ATP phosphoribosyltrans 93.2 0.23 7.8E-06 49.7 8.6 112 398-526 6-123 (275)
57 3a2k_A TRNA(Ile)-lysidine synt 92.5 0.15 5.2E-06 55.0 6.6 81 164-254 375-455 (464)
58 1wyd_A Hypothetical aspartyl-t 92.5 0.6 2.1E-05 49.8 11.0 111 395-523 137-249 (429)
59 1nj1_A PROR, proline-tRNA synt 92.0 0.23 8E-06 54.1 7.3 131 395-526 74-220 (501)
60 1x54_A Asparaginyl-tRNA synthe 92.0 0.65 2.2E-05 49.6 10.6 111 394-523 137-250 (434)
61 3ial_A Prolyl-tRNA synthetase; 90.6 0.59 2E-05 51.0 8.6 134 394-527 57-206 (518)
62 3qne_A Seryl-tRNA synthetase, 89.2 1.2 4.1E-05 48.0 9.5 129 395-526 188-333 (485)
63 4hvc_A Bifunctional glutamate/ 88.8 1.8 6.1E-05 47.3 10.7 133 394-527 63-212 (519)
64 3a5y_A GENX, putative lysyl-tR 88.6 1.8 6.3E-05 44.6 10.2 113 395-523 39-158 (345)
65 3a74_A Lysyl-tRNA synthetase; 88.1 2.5 8.5E-05 45.8 11.2 111 396-523 178-291 (493)
66 1e1o_A Lysyl-tRNA synthetase, 87.5 2.8 9.4E-05 45.6 11.1 111 396-523 187-300 (504)
67 1n9w_A Aspartyl-tRNA synthetas 87.0 1.6 5.4E-05 46.4 8.7 112 395-523 128-241 (422)
68 3mf2_A BLL0957 protein; aminoa 85.5 1.6 5.4E-05 44.9 7.3 174 395-578 67-288 (346)
69 3bju_A Lysyl-tRNA synthetase; 85.2 2.8 9.5E-05 45.8 9.7 111 397-523 181-293 (521)
70 4ex5_A Lysine--tRNA ligase; st 84.1 3.4 0.00012 45.1 9.7 110 396-522 208-320 (529)
71 1ati_A Glycyl-tRNA synthetase; 84.0 2.2 7.5E-05 46.4 8.2 78 449-527 183-271 (505)
72 3i7f_A Aspartyl-tRNA synthetas 83.1 4.5 0.00015 44.3 10.1 110 396-520 248-358 (548)
73 2cja_A Seryl-tRNA synthetase; 82.8 1.3 4.6E-05 48.2 5.8 132 395-526 234-407 (522)
74 1l0w_A Aspartyl-tRNA synthetas 81.1 9.8 0.00034 42.0 12.1 113 396-523 148-261 (580)
75 1c0a_A Aspartyl tRNA synthetas 80.8 11 0.00039 41.5 12.5 113 396-523 142-255 (585)
76 3nem_A Aspartyl-tRNA synthetas 80.6 6.7 0.00023 41.7 10.2 109 396-521 141-252 (438)
77 2xgt_A Asparaginyl-tRNA synthe 80.2 3 0.0001 44.4 7.4 110 396-522 136-246 (435)
78 1eov_A ASPRS, aspartyl-tRNA sy 76.2 13 0.00043 40.2 10.8 107 396-520 182-292 (487)
79 2zt5_A Glycyl-tRNA synthetase; 75.9 11 0.00038 42.5 10.7 40 445-485 236-279 (693)
80 4ah6_A Aspartate--tRNA ligase, 75.1 18 0.00063 40.0 11.9 112 396-523 152-265 (617)
81 3m4p_A Ehasnrs, asparaginyl-tR 70.4 14 0.00046 39.6 9.2 109 396-522 160-270 (456)
82 1ni5_A Putative cell cycle pro 58.9 12 0.00042 39.5 6.2 80 164-256 348-427 (433)
83 3ikl_A DNA polymerase subunit 25.7 83 0.0028 33.5 5.8 79 449-527 147-238 (459)
84 1suy_C CIIABD, circadian clock 25.1 27 0.00093 22.1 1.1 18 234-251 1-18 (34)
85 3fn2_A Putative sensor histidi 24.4 69 0.0024 26.7 3.8 25 221-245 50-74 (106)
86 1whz_A Hypothetical protein; a 23.3 1.9E+02 0.0065 21.7 6.1 53 323-379 4-62 (70)
No 1
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=100.00 E-value=9.7e-139 Score=1166.10 Aligned_cols=585 Identities=51% Similarity=0.922 Sum_probs=536.7
Q ss_pred CCeEEechHHHHHHhCCCCCHHHHHHHhhhcCCcccccchhHHHHhhhccccccCCCCCCceEEEEecCCCcccccCHHH
Q 007706 1 MPTVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEVPANRYDLLCLEG 80 (592)
Q Consensus 1 Mp~i~~~~~~l~~~~g~~~~~~e~~~~l~~~g~e~e~~~~~~~~~~~~~~~~~~~~~~~~d~i~~ieit~NR~Dlls~~G 80 (592)
||||+|++++|++++|+++|++||+++||+||+|+|++++|++|+.+++|.++. .+.++|.+++|++|||||||||++|
T Consensus 1 Mp~i~v~~~~l~~~~g~~~~~~e~~~~~~~~g~e~d~~~~~~~~~~~~~~~~~~-~~~~~d~i~ei~itpNR~D~ls~~G 79 (589)
T 3l4g_B 1 MPTVSVKRDLLFQALGRTYTDEEFDELCFEFGLELDEITSEKEIISKEQGNVKA-AGASDVVLYKIDVPANRYDLLCLEG 79 (589)
T ss_dssp CCEEEEEHHHHHHHHTSCCCTTHHHHHHHHTTCEEEEEEEHHHHHTTTSSCCCC-CSSSSSEEEEEECCTTCSTTSSHHH
T ss_pred CCEEEECHHHHHHHHCCCCCHHHHHHHHHhcCCccccccccchhhhhccccccc-ccCCCCeEEEEecCCChhHHhHHHH
Confidence 999999999999999999999999999999999999999999998988887655 5578999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCceeecCCCCCCcceEEEeecCCCCCCeEEEEEEeccccCcCCcCCHHHHHHHHHhcCCCCCcEEE
Q 007706 81 IAQALRVFNKQQEIPKYTLSDVSKDSMLQMHVKPETSSIRPYVVCAVLRDISFDEASYNSFIDLQDKLHQNICRRRTLVA 160 (592)
Q Consensus 81 iARel~a~~g~~~~p~~~~~~~~~~~~~~i~V~~~~~~~rp~~~~~vi~~V~~~~~~~~s~~~lq~kL~~~~~r~r~~Vd 160 (592)
||||+|+++|..+.|.+...... .....+.|++++++.||||+|++||||++++++++||+|||+|||++++|+|++||
T Consensus 80 iARela~~~~~~~~p~~~~~~~~-~~~~~i~v~~~~~~~cp~y~~~vi~~V~~~~~~~~Sp~wlq~rL~~~~~r~~~~Vd 158 (589)
T 3l4g_B 80 LVRGLQVFKERIKAPVYKRVMPD-GKIQKLIITEETAKIRPFAVAAVLRNIKFTKDRYDSFIELQEKLHQNICRKRALVA 158 (589)
T ss_dssp HHHHHHHHTTSSCCCCCEEECCS-SCCCEEEECTTTTTTSCEEEEEEECCBCCCHHHHHHHHHHHHHTTTTTTTTTTSEE
T ss_pred HHHHHHHhcCCCCCCCccccCCC-CCceeEEEeecCcccCCeEEEEEEECcCcCccccCCHHHHHHHHHHccCCCceEEe
Confidence 99999999886788888765432 22456888888899999999999999999998888999999999999999999999
Q ss_pred eeeeeccccCCCeEEEecCCCceEEEeCCCcccCChhHHHhhhccccccccccccccCCCceeEEEeCCCCeeecCCccc
Q 007706 161 IGTHDLDTLQGPFTYEALPPSHINFVPLKQTRDFTADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNRTVLSLPPIIN 240 (592)
Q Consensus 161 Ign~Dld~i~~p~~y~~~~~~~i~f~~L~~~~~~~~~el~~l~~~~~~l~~y~~i~~~~~~~~vI~D~~~~vlslagIig 240 (592)
|||||+|+|++|++|++.++++++|+|||++++++.+++++++.+|.+|++|+||+++++.||||+|++|.++|||||||
T Consensus 159 Itn~Dldki~g~~~~~~~~~~~~~f~~Ld~~~~l~~~~l~~~~~~~~~~~~y~~ii~~~~~~~vI~D~~~~vlslaGImg 238 (589)
T 3l4g_B 159 IGTHDLDTLSGPFTYTAKRPSDIKFKPLNKTKEYTACELMNIYKTDNHLKHYLHIIENKPLYPVIYDSNGVVLSMPPIIN 238 (589)
T ss_dssp EEEEEGGGCCSCEEEEEECSTTCEECBTTCSSCEEHHHHHHHSTTCTTTTTTTTTTCCSSCEEEEECTTCCCCEETTTEE
T ss_pred hhhhhHHHcCCCeEEEEeCCCCcEEEECCCceEecHHHhhhhhcccccccccceecccCCCcEEEEECCCCEEEECCccC
Confidence 99999999999999999998889999999988999999999999999999999999999999999999986689999999
Q ss_pred CCcceeecCCeEEEEEecccChhhHHHHHHHHHHHHHHhcCCceeEeeEEEEeeCCceeeecCCCceEEEeehhHHhhcc
Q 007706 241 GAHSAITLKTKNVFIECTATDLTKAKIVLNTMVTIFSEYCKRKYQVEPVEVVYADGRSYVYPDLSAYNMEVSLSYINHTI 320 (592)
Q Consensus 241 g~~s~It~~T~nI~iE~a~~D~~~~~~al~~~~~~l~~~~~~~~~i~~v~v~~~~g~~~~~p~~~~~~i~l~~~~i~~~L 320 (592)
|++|+||++||||||||||+|++.+..|+++++++++++|++++++++++|++..|..+.+|...+++|+++.++|+++|
T Consensus 239 G~~S~Vt~~T~~V~lE~Ag~D~~~~~~al~~a~~li~e~~gg~~~~e~~~v~~~~g~~~~~p~~~~~~i~l~~~~i~~ll 318 (589)
T 3l4g_B 239 GDHSRITVNTRNIFIECTGTDFTKAKIVLDIIVTMFSEYCENQFTVEAAEVVFPNGKSHTFPELAYRKEMVRADLINKKV 318 (589)
T ss_dssp BSTTCCCTTCCCEEEEEEESCHHHHHHHHHHHHHHHGGGBTTSSEEECEEEECTTSCEEEECCCCCEEEEEEHHHHHHHH
T ss_pred CccceeeCCCCEEEEEEeeeCHHHHHHHHHHHHHHHHHHcCCCceEEEEEEEecCCceEecccccceEEEecHHHHHHhh
Confidence 99999999999999999999999999999999999999999988899999986547778899888899999999999999
Q ss_pred CCcCCHHHHHHHHHhcCCeEEEcCCCCCcceEEEEcCCCCcccCCCchhHhHHHHHhCCCCCCCCCCCCC---CCChHHH
Q 007706 321 GVSLEAEEVTSLLNRMQLHAERSASGNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYGYNNIPKRKPASV---KPLALNE 397 (592)
Q Consensus 321 G~~l~~~~i~~~L~~lg~~~~~~~~~~~~~~~~V~vP~~R~DI~~~~DliEEIar~yGydni~~~~p~~~---~~~~~~~ 397 (592)
|++++.++|.++|++|||+++...++ +. |.|+||+||+||+|++||||||||+|||||||+++|... ..++.++
T Consensus 319 G~~i~~~~i~~iL~~Lgf~~~~~~~~-~~--~~V~vPs~R~DI~~e~DLiEEVaRiyGYdnIp~tlP~~~~~g~~~~~~~ 395 (589)
T 3l4g_B 319 GIRETPENLAKLLTRMYLKSEVIGDG-NQ--IEIEIPPTRADIIHACDIVEDAAIAYGYNNIQMTLPKTYTIANQFPLNK 395 (589)
T ss_dssp TCCCCHHHHHHHHHHTTCEEEECSSS-SE--EEEEECSSCTTCCSHHHHHHHHHHHHCGGGSCCCCCCCCCCCCCCHHHH
T ss_pred CCCCCHHHHHHHHHHCCCeEEEcCCC-ce--EEEECCCCccccCCccHHHHHHHHHhCcccCCCcCCCccccCCCCHHHH
Confidence 99999999999999999999764322 35 999999999999999999999999999999999998654 6789999
Q ss_pred HHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCce-eeCCCcCCcccccccchHHHHHHHHhccCCCCCeeEE
Q 007706 398 FSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIKIY 476 (592)
Q Consensus 398 ~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v-i~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~~~lF 476 (592)
+.+++|+.|+++||+|++||+|+|++.+++.++.+.+..+++ |+||+|+|+++|||||+||||+++++|++++.|+|+|
T Consensus 396 ~~~~ir~~l~~~Gf~Evitysf~s~~~~~~~l~~~~~~~~~v~L~NPis~e~svmRtsLlpgLL~~l~~N~~~~~~vrlF 475 (589)
T 3l4g_B 396 LTELLRHDMAAAGFTEALTFALCSQEDIADKLGVDISATKAVHISNPKTAEFQVARTTLLPGLLKTIAANRKMPLPLKLF 475 (589)
T ss_dssp HHHHHHHHHHHTTCEECCCCSEECHHHHTGGGTSCTTSSCCCBBSSCSSGGGSEECSCSHHHHHHHHHHTTTSCSCEEEE
T ss_pred HHHHHHHHHHHCCCEEEecCcccCHHHHHHHhCCCCCCCCeEEEcCCCchhHhHHHHHHHHHHHHHHHHHhcCCCceEEE
Confidence 999999999999999999999999998777777654435679 9999999999999999999999999999987789999
Q ss_pred EeCcEeecCCCcccccccccEEEEEEeCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEecCCCCccCCceEEEEE
Q 007706 477 EVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVIGTPFVPVGDDTGYYIQRSDEPEFLPGRQASITH 556 (592)
Q Consensus 477 EiG~V~~~~~~~~~~~~~~~~l~~~~~g~~~~f~~ikg~le~ll~~lgi~~~~~~~~~~~~~~~~~~~~f~pgr~A~I~~ 556 (592)
|+|+||+++...+++.++.++++++++|+..+|+++||+++++|+.+|++... ....|++++..+++|||||||+|++
T Consensus 476 EiG~Vf~~d~~~~~~~~e~~~la~~~~g~~~~f~~lkg~le~ll~~lg~~~~~--~~~~~~~~~~~~~~~hPGr~A~I~~ 553 (589)
T 3l4g_B 476 EISDIVIKDSNTDVGAKNYRHLCAVYYNKNPGFEIIHGLLDRIMQLLDVPPGE--DKGGYVIKASEGPAFFPGRCAEIFA 553 (589)
T ss_dssp EEEEEEEECTTSTTSEEEEEEEEEEEESSSCCHHHHHHHHHHHHHHTTCCBST--TTTSEEEEECCCTTEEEEEEEEEEE
T ss_pred EeeeEEecCCccccCCccccEEEEEEECCCCCHHHHHHHHHHHHHHcCCCccc--cccceEEeccCCCCccCCCEEEEEE
Confidence 99999998765556778889999999999999999999999999999986310 0012788898999999999999999
Q ss_pred CCEEEEEEEEeCHHHHHhCCCCCCEEEEEEeccccC
Q 007706 557 KGKHVGTFGIVHPEVLNNFDISDPCSFMEIDIENFL 592 (592)
Q Consensus 557 ~g~~iG~~GelhP~vl~~~~l~~pv~~~El~l~~l~ 592 (592)
+|+.||++|+|||+|+++|||+.|||+|||||+.|+
T Consensus 554 ~g~~iG~~GelHP~v~~~~~l~~~v~~~El~l~~l~ 589 (589)
T 3l4g_B 554 RGQSVGKLGVLHPDVITKFELTMPCSSLEINIGPFL 589 (589)
T ss_dssp TTEEEEEEEEECHHHHHHTTCCSCEEEEEEECGGGC
T ss_pred CCeEEEEEEEECHHHHHHcCCCCCeEEEEEEhHHhC
Confidence 999999999999999999999999999999999885
No 2
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=100.00 E-value=9.3e-105 Score=912.56 Aligned_cols=480 Identities=22% Similarity=0.360 Sum_probs=407.3
Q ss_pred CceEEEEecCCCcccccCHHHHHHHHHHhcCC-CCCCceeecCCCCCCcceEEEeecCCCCCCeEEEEEEeccccCcCCc
Q 007706 60 EEVIYKIEVPANRYDLLCLEGIAQALRVFNKQ-QEIPKYTLSDVSKDSMLQMHVKPETSSIRPYVVCAVLRDISFDEASY 138 (592)
Q Consensus 60 ~d~i~~ieit~NR~Dlls~~GiARel~a~~g~-~~~p~~~~~~~~~~~~~~i~V~~~~~~~rp~~~~~vi~~V~~~~~~~ 138 (592)
+|+++||++|||||||||++||||||||+++. ...|.+...... ....+.|++++++.||||+|++|+||++++
T Consensus 154 ~D~viei~iTpNR~D~lS~~GiARElaa~~~~~~~~p~~~~~~~~--~~~~~~v~v~~~~~cp~y~~~vi~~V~~~~--- 228 (795)
T 3pco_B 154 DDNTIEISVTPNRADCLGIIGVARDVAVLNQLPLVQPEIVPVGAT--IDDTLPITVEAPEACPRYLGRVVKGINVKA--- 228 (795)
T ss_dssp CCEEEEEECCTTCCSCSSHHHHHHHHHHHHTCCCCCCCCCCCCCC--SCCCCCCCCSCTTTCSEEEEEEEESCCTTC---
T ss_pred CceeEEeecCCCcHHHhHHHHHHHHHHHHhCCCCCCCcccccccC--CCcceEEEecCcccCceEEEEEEEcccCCC---
Confidence 78999999999999999999999999999997 467776543221 123466777778999999999999999985
Q ss_pred CCHHHHHHHHHhcCCC-CCcEEEeee------------eeccccCCCeEEEecCCCceEEEeCCCcccCChhHHHhhhcc
Q 007706 139 NSFIDLQDKLHQNICR-RRTLVAIGT------------HDLDTLQGPFTYEALPPSHINFVPLKQTRDFTADELMEFYKS 205 (592)
Q Consensus 139 ~s~~~lq~kL~~~~~r-~r~~VdIgn------------~Dld~i~~p~~y~~~~~~~i~f~~L~~~~~~~~~el~~l~~~ 205 (592)
+||+|||+||+++++| +|++||||| ||+|++.+++.++..++++ +|++|++ +
T Consensus 229 ~SP~wlq~rL~~~g~r~in~vVDitNyv~le~GqPlhafD~dki~g~i~vr~a~~ge-~~~~Ld~--------------~ 293 (795)
T 3pco_B 229 PTPLWMKEKLRRCGIRSIDAVVDVTNYVLLELGQPMHAFDKDRIEGGIVVRMAKEGE-TLVLLDG--------------T 293 (795)
T ss_dssp CCCTHHHHHHHHTTCCCCCSHHHHHHHHHHHHSCCEEEEEGGGCCSCCEEECCCSSC-CEEETTT--------------E
T ss_pred CCHHHHHHHHHHcCCCCccHHHHHHHHHHHHhCCCCccccHhHCCCCeEEEEcCCCC-EEEecCC--------------c
Confidence 3899999999999988 588999998 5666666666666655543 6666654 4
Q ss_pred ccccccccccccCCCceeEEEeCCCCeeecCCcccCCcceeecCCeEEEEEec--------------------------c
Q 007706 206 DLKLKKYLHIIENSPLYPVLYDQNRTVLSLPPIINGAHSAITLKTKNVFIECT--------------------------A 259 (592)
Q Consensus 206 ~~~l~~y~~i~~~~~~~~vI~D~~~~vlslagIigg~~s~It~~T~nI~iE~a--------------------------~ 259 (592)
++++. +.++||+|+++ ++|+||||||++|+|+++|||||||+| |
T Consensus 294 e~~l~---------~~~lvi~D~~~-~~~lagi~gg~~s~v~~~T~~i~lE~a~f~p~~Ir~tar~~~l~tdas~RfERG 363 (795)
T 3pco_B 294 EAKLN---------ADTLVIADHNK-ALAMGGIFGGEHSGVNDETQNVLLECAFFSPLSITGRARRHGLHTDASHRYERG 363 (795)
T ss_dssp EECCC---------TTCCEEECSSS-EEEETTTCCBSTTBCCTTCCCEEEEEEECCGGGSTTHHHHTTCCCHHHHHHHHC
T ss_pred eeecC---------CCcEEEEeCCc-eEEEccccCCcceeeeCCCCeEEEEEeccCHHHHHHHHHHhCCCchHhhhhhcC
Confidence 44553 24599999996 999999999999999999999999999 6
Q ss_pred cChhhHHHHHHHHHHHHHHhcCCceeEeeEEEEeeCCceeeecCCCceEEEeehhHHhhccCCcCCHHHHHHHHHhcCCe
Q 007706 260 TDLTKAKIVLNTMVTIFSEYCKRKYQVEPVEVVYADGRSYVYPDLSAYNMEVSLSYINHTIGVSLEAEEVTSLLNRMQLH 339 (592)
Q Consensus 260 ~D~~~~~~al~~~~~~l~~~~~~~~~i~~v~v~~~~g~~~~~p~~~~~~i~l~~~~i~~~LG~~l~~~~i~~~L~~lg~~ 339 (592)
+||+.+..|+++++++++++|++ ++..+...+. . .+...+++|.++.++|+++||++++.++|.++|++|||+
T Consensus 364 vDp~~~~~al~ra~~Li~e~~gg--~v~~v~~~~~--~---~~~~~~~~i~l~~~~i~~~lG~~i~~~~i~~iL~~Lgf~ 436 (795)
T 3pco_B 364 VDPALQHKAMERATRLLIDICGG--EAGPVIDITN--E---ATLPKRATITLRRSKLDRLIGHHIADEQVTDILRRLGCE 436 (795)
T ss_dssp CCTTCHHHHHHHHHHHHHTTSSC--EEEEEEEEEC--T---TTSCCCCEEEEEHHHHHHHHSSCCCHHHHHHHHHHHTCE
T ss_pred CCHHHHHHHHHHHHHHHHHHhCC--eEEEEEEeCC--c---cCCCCCeEEEecHHHHHHHhCCCCCHHHHHHHHHHCCCe
Confidence 78889999999999999999976 4455433321 0 013456789999999999999999999999999999999
Q ss_pred EEEcCCCCCcceEEEEcCCCCcccCCCchhHhHHHHHhCCCCCCCCCCCCC----CCChHHHHHHHHHHHHHHCCceEEe
Q 007706 340 AERSASGNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYGYNNIPKRKPASV----KPLALNEFSDLMRLEIAMNGFTEVL 415 (592)
Q Consensus 340 ~~~~~~~~~~~~~~V~vP~~R~DI~~~~DliEEIar~yGydni~~~~p~~~----~~~~~~~~~~~lr~~l~~~Gf~Ev~ 415 (592)
++..+ +. |.|+||+||+||.|++||||||||+|||||||+++|... ...+.+++.+++|+.|+++||+|++
T Consensus 437 v~~~~---~~--~~V~vPs~R~DI~~e~DliEEVaRiyGydnIp~~~p~~~~~~~~~~~~~~~~~~~r~~l~~~G~~Evi 511 (795)
T 3pco_B 437 VTEGK---DE--WQAVAPSWRFDMEIEEDLVEEVARVYGYNNIPDEPVQASLIMGTHREADLSLKRVKTLLNDKGYQEVI 511 (795)
T ss_dssp EEEET---TE--EEEECCSSCSSCSSHHHHHHHHHHHHCGGGSCCCCCEEECCCCCCCTTBCCHHHHHHHHHHTTCEECC
T ss_pred EEeCC---ce--EEEECCCCccccCCccHHHHHHHHHhCcccCCccCCCccccCCCCCHHHHHHHHHHHHHHHCCCeeee
Confidence 97643 25 999999999999999999999999999999999998632 3344455789999999999999999
Q ss_pred eccccChHHHHHHcCCCCCCCCce-eeCCCcCCcccccccchHHHHHHHHhccCCCCC-eeEEEeCcEeecCCCcccccc
Q 007706 416 TWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKP-IKIYEVGDVVLLDEKKDVGAS 493 (592)
Q Consensus 416 t~sl~s~~~~~~~~~~~~~~~~~v-i~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~-~~lFEiG~V~~~~~~~~~~~~ 493 (592)
||||+|++....+ +. ..++| |+||+|+|+++|||||+||||+++++|++|+++ +++||+|+||.++.+.+.+..
T Consensus 512 tysf~~~~~~~~~-~~---~~~~v~l~NPis~e~svmRtsLlpgLL~~~~~N~~r~~~~v~lFEiG~Vf~~~~~~~~~~~ 587 (795)
T 3pco_B 512 TYSFVDPKVQQMI-HP---GVEALLLPSPISVEMSAMRLSLWTGLLATVVYNQNRQQNRVRIFESGLRFVPDTQAPLGIR 587 (795)
T ss_dssp CCSEECHHHHHHH-SS---SCCCCBCSSCSCSTTCEECSSSHHHHHHHHHHHHTSSCCCCEEEEEEEEEEECTTSSTTEE
T ss_pred ccCcCCHHHHHhh-CC---CCCeEEEcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCccEEEeeeEEecCCCcccCcc
Confidence 9999999875443 31 24678 999999999999999999999999999999875 999999999998765445678
Q ss_pred cccEEEEEEeCC-----------CCCHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEecCCCCccCCceEEEEECCEEEE
Q 007706 494 CRRRLAALYCGA-----------NSGFELIHCLVDRIMEVIGTPFVPVGDDTGYYIQRSDEPEFLPGRQASITHKGKHVG 562 (592)
Q Consensus 494 ~~~~l~~~~~g~-----------~~~f~~ikg~le~ll~~lgi~~~~~~~~~~~~~~~~~~~~f~pgr~A~I~~~g~~iG 562 (592)
|.+++|++++|. .++|+++||+++++|..+|+.. .+++++.++++|||||||+|+++|+.||
T Consensus 588 e~~~la~~~~G~~~~~~w~~~~~~~dF~dlKg~ve~ll~~lg~~~-------~~~~~~~~~~~~hPGrsA~I~~~g~~iG 660 (795)
T 3pco_B 588 QDLMLAGVICGNRYEEHWNLAKETVDFYDLKGDLESVLDLTGKLN-------EVEFRAEANPALHPGQSAAIYLKGERIG 660 (795)
T ss_dssp EEEEEEEEEESBSSCSCSSSCCCBCCHHHHHHHHHHHTTTSSCCS-------SCCEECCCCTTEEEEEEEEECTTTSCCE
T ss_pred hhheEEEEEECCCcccccccCCCCCCHHHHHHHHHHHHHHcCCCc-------ceEEEECCCCCCCCCCEEEEEECCEEEE
Confidence 889999999984 3689999999999999999721 1678888899999999999999999999
Q ss_pred EEEEeCHHHHHhCCCCCCEEEEEEeccccC
Q 007706 563 TFGIVHPEVLNNFDISDPCSFMEIDIENFL 592 (592)
Q Consensus 563 ~~GelhP~vl~~~~l~~pv~~~El~l~~l~ 592 (592)
+||+|||+++++|||+.|||+|||||+.|+
T Consensus 661 ~~GelHP~v~~~~dl~~~v~~~Eldld~L~ 690 (795)
T 3pco_B 661 FVGVVHPELERKLDLNGRTLVFELEWNKLA 690 (795)
T ss_dssp EEEEECTTTTTTTCCCSCEEEEEEEGGGSS
T ss_pred EEEEECHHHHHHcCCCCCEEEEEEEHHHhh
Confidence 999999999999999999999999999874
No 3
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B*
Probab=100.00 E-value=8.5e-100 Score=874.48 Aligned_cols=475 Identities=19% Similarity=0.337 Sum_probs=407.3
Q ss_pred CceEEEEecCCCcccccCHHHHHHHHHHhcCCC-CCCceeecCCCCCCcceEEEeecCCCCCCeEEEEEEeccccCcCCc
Q 007706 60 EEVIYKIEVPANRYDLLCLEGIAQALRVFNKQQ-EIPKYTLSDVSKDSMLQMHVKPETSSIRPYVVCAVLRDISFDEASY 138 (592)
Q Consensus 60 ~d~i~~ieit~NR~Dlls~~GiARel~a~~g~~-~~p~~~~~~~~~~~~~~i~V~~~~~~~rp~~~~~vi~~V~~~~~~~ 138 (592)
+|+++||++|||||||||++||||||||++|.. ..|.+............+.|.+++++.||||+|++|+||++.
T Consensus 156 ~D~viei~iTpNR~D~lS~~GiARelaa~~~~~~~~p~~~~~~~~~~~~~~~~v~v~~~~~cp~y~~~~i~~v~~~---- 231 (795)
T 2rhq_B 156 NDQVMEFDLTPNRADALSMVGTAYEVAALYQTEMTKPETQSNETSESATNELSVTIDNPEKVPYYSARVVKNVSIE---- 231 (795)
T ss_dssp SCEEEEEECCGGGGGGSSHHHHHHHHHHHHTCCBCCCCCCCCCCSCBGGGTCEEEESCTTTCSEEEEEEEECCCCC----
T ss_pred CceEEEEeCCCChHHHhHHHHHHHHHHHHhCCCCCCCCccccccccCCCCceEEEecCcccCceEEEEEEECCCCC----
Confidence 689999999999999999999999999999974 667664321101112346777777889999999999999996
Q ss_pred CCHHHHHHHHHhcCCC-CCcEEEeee------------eeccccC-CCeEEEecCCCceEEEeCCCcccCChhHHHhhhc
Q 007706 139 NSFIDLQDKLHQNICR-RRTLVAIGT------------HDLDTLQ-GPFTYEALPPSHINFVPLKQTRDFTADELMEFYK 204 (592)
Q Consensus 139 ~s~~~lq~kL~~~~~r-~r~~VdIgn------------~Dld~i~-~p~~y~~~~~~~i~f~~L~~~~~~~~~el~~l~~ 204 (592)
+||+|||+||+++++| +|++|||+| ||+|++. +++.++..+++ .+|+||++
T Consensus 232 ~sp~~l~~rL~~~g~r~in~vVDitNyv~le~G~Plha~D~dki~~g~i~vr~a~~g-e~~~~L~~-------------- 296 (795)
T 2rhq_B 232 PSPIWVQARLIKAGIRPINNVVDISNYVLLEYGQPLHMFDQDHIGSKEIVVRQAKDE-ETMTTLDN-------------- 296 (795)
T ss_dssp CCCHHHHHHHHHTTCCCCCHHHHHHHHHHHHHSCCCEEEEGGGSSSSEEEEEECCTT-CEEEBTTS--------------
T ss_pred CCHHHHHHHHHHCCCCCccHHHHHHHHHHHHhCCCcccccHhHCCCCceEEEEcCCC-CEEEecCC--------------
Confidence 4899999999999888 599999977 6777776 67777766654 37777765
Q ss_pred cccccccccccccCCCceeEEEeCCCCeeecCCcccCCcceeecCCeEEEEEec--------------------------
Q 007706 205 SDLKLKKYLHIIENSPLYPVLYDQNRTVLSLPPIINGAHSAITLKTKNVFIECT-------------------------- 258 (592)
Q Consensus 205 ~~~~l~~y~~i~~~~~~~~vI~D~~~~vlslagIigg~~s~It~~T~nI~iE~a-------------------------- 258 (592)
+++++. +.++||+|++| ++|+||||||++|+||++|||||||+|
T Consensus 297 ~~~~l~---------~~~lvi~D~~~-~~~~agi~gg~~s~v~~~T~~i~le~a~f~p~~Ir~tar~~~l~tdas~RfER 366 (795)
T 2rhq_B 297 NERKLV---------DTDIVISNGQE-PIALAGVMGGDFSEVTEQTTNVVIEGAIFDPVSIRHTSRRLNLRSEASSRFEK 366 (795)
T ss_dssp CEEECC---------TTCEEEESSSS-EEEETTTEEBSSSBCCTTCCEEEEEEEECCHHHHHHHHHHTTCCCHHHHHHHT
T ss_pred ceeecC---------CCcEEEEECCC-ceEecceeCCCceeeeCCCCEEEEEEEeeCHHHHHHHHHHcCCCchhhhhhcc
Confidence 344443 24589999997 999999999999999999999999999
Q ss_pred ccChhhHHHHHHHHHHHHHHhcCCceeEeeEEEEeeCCceeeec-CCCceEEEeehhHHhhccCCcCCHHHHHHHHHhcC
Q 007706 259 ATDLTKAKIVLNTMVTIFSEYCKRKYQVEPVEVVYADGRSYVYP-DLSAYNMEVSLSYINHTIGVSLEAEEVTSLLNRMQ 337 (592)
Q Consensus 259 ~~D~~~~~~al~~~~~~l~~~~~~~~~i~~v~v~~~~g~~~~~p-~~~~~~i~l~~~~i~~~LG~~l~~~~i~~~L~~lg 337 (592)
|+|+..+..|+++++.++.++|++.+. . +..+.+| ..++++|+++.++|+++||++++.++|.++|++||
T Consensus 367 GvD~~~~~~al~~~~~ll~~~~gg~v~-~--------~v~~~~~~~~~~~~i~l~~~~i~~~lG~~i~~~~i~~iL~~Lg 437 (795)
T 2rhq_B 367 GIATEFVDEAVDRACYLLQELASGEVL-Q--------DRVSSGDLGSFVTPIDITAEKVNKTIGFNLSNDEIQSIFRQLG 437 (795)
T ss_dssp CCCGGGHHHHHHHHHHHHHHHSCCEEC-B--------CCEEEECCCCSEEEEEEEHHHHHHHHTCCCCHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCccc-c--------ceEEccCCCCCCeeEEecHHHHHHHhCCCCCHHHHHHHHHHCC
Confidence 888999999999999999999976321 2 3334455 35677999999999999999999999999999999
Q ss_pred CeEEEcCCCCCcceEEEEcCCCCcccCCCchhHhHHHHHhCCCCCCCCCCC-CC----CCChHHHHHHHHHHHHHHCCce
Q 007706 338 LHAERSASGNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYGYNNIPKRKPA-SV----KPLALNEFSDLMRLEIAMNGFT 412 (592)
Q Consensus 338 ~~~~~~~~~~~~~~~~V~vP~~R~DI~~~~DliEEIar~yGydni~~~~p~-~~----~~~~~~~~~~~lr~~l~~~Gf~ 412 (592)
|+++..+ +. |.|+||+||+||.|++||||||||+|||||||.++|. .. ..++.+++.+++|+.|+++||+
T Consensus 438 ~~v~~~~---~~--~~V~vPs~R~Di~~e~DliEEVaRiyGydnIp~tlP~~~~~~~g~~~~~~~~~~~ir~~L~~~Gf~ 512 (795)
T 2rhq_B 438 FETTLKG---ET--LTVNVPSRRKDITIKEDLIEEVARIYGYDEIPSSLPVFGEVTSGELTDRQHKTRTLKETLEGAGLN 512 (795)
T ss_dssp CEEEEET---TE--EEEEEETTCTTCCSHHHHHHHHHHHHCTTTSCCCCCCCSSCCCCCCCHHHHHHHHHHHHHHHTTCE
T ss_pred CeEEeCC---ce--EEEECCCCccccCCccHHHHHHHHHhCcccCCccCCCccccCCCCCCHHHHHHHHHHHHHHHCCCE
Confidence 9996432 35 9999999999999999999999999999999999996 32 6788999999999999999999
Q ss_pred EEeeccccChHHHHHHcCCCCCCCC-ce-eeCCCcCCcccccccchHHHHHHHHhccCCCC-CeeEEEeCcEeecCCCcc
Q 007706 413 EVLTWILCSSKEISTMLNRQTDEST-AV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPK-PIKIYEVGDVVLLDEKKD 489 (592)
Q Consensus 413 Ev~t~sl~s~~~~~~~~~~~~~~~~-~v-i~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~-~~~lFEiG~V~~~~~~~~ 489 (592)
|++||+|++++.. ++++ + + .+ .+ |.||+|+|+++|||||+||||+++++|++|+. ++++||+|+||.++...+
T Consensus 513 Evitysfvs~~~~-~~l~-~-~-~~~~v~L~NPis~e~svLRtsLlpgLL~~l~~N~~r~~~~vrlFEiG~Vf~~d~~~~ 588 (795)
T 2rhq_B 513 QAITYSLVSKDHA-KDFA-L-Q-ERPTISLLMPMSEAHATLRQSLLPHLIEATAYNVARKNKDVRLYEIGRVFFGNGEGE 588 (795)
T ss_dssp ECCCCSEECTTTT-TTTC-S-S-CCCCEECSSCSCTTSSEECSCSHHHHHHHHHHHHHTTCCCEEEEEEEEEEECCCTTS
T ss_pred EEecCCccCHHHH-HhhC-C-C-CCceEEEcCCCchhhhhhhhccHHHHHHHHHHHhcCCCCCeEEEEEeeEEecCCccc
Confidence 9999999999865 5554 2 1 45 69 99999999999999999999999999999875 699999999998654321
Q ss_pred cccccccEEEEEEeCCC-----------CCHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEecCCCCccCCceEEEEECC
Q 007706 490 VGASCRRRLAALYCGAN-----------SGFELIHCLVDRIMEVIGTPFVPVGDDTGYYIQRSDEPEFLPGRQASITHKG 558 (592)
Q Consensus 490 ~~~~~~~~l~~~~~g~~-----------~~f~~ikg~le~ll~~lgi~~~~~~~~~~~~~~~~~~~~f~pgr~A~I~~~g 558 (592)
+. .+.++++++++|.. ++|+++||+++++|+.+|++ +.+++..+|+|||||||+|+++|
T Consensus 589 ~~-~e~~~la~l~~G~~~~~~w~~~~~~~dF~dlKg~le~ll~~lG~~---------~~~~~~~~p~~hPGr~a~I~~~g 658 (795)
T 2rhq_B 589 LP-DEVEYLSGILTGEYVVNAWQGKKEEIDFFIAKGVVDRVAEKLNLE---------FSYKAGKIEGLHPGRTAIVSLEG 658 (795)
T ss_dssp CC-EEEEEEEEEEESEEEEEGGGTEEEECCHHHHHHHHHHHHHHHTCC---------CEEEECCCTTEEEEEEEEEEETT
T ss_pred Cc-chhhEEEEEEEeccccccccCCCCCCCHHHHHHHHHHHHHHcCCc---------EEEEECCCCcccCCcEEEEEECC
Confidence 22 68889999999975 89999999999999999986 56777888999999999999999
Q ss_pred EEEEEEEEeCHHHHHhCCCCCCEEEEEEeccccC
Q 007706 559 KHVGTFGIVHPEVLNNFDISDPCSFMEIDIENFL 592 (592)
Q Consensus 559 ~~iG~~GelhP~vl~~~~l~~pv~~~El~l~~l~ 592 (592)
+.||++|+|||+|+++|||+.| |+|||+|+.|+
T Consensus 659 ~~IG~~G~lHP~Vl~~~~l~~~-~afEL~le~L~ 691 (795)
T 2rhq_B 659 QDIGFIGELHPQVAADNDLKRT-YVFELNYDAMM 691 (795)
T ss_dssp EEEEEEEEECHHHHHHTTCCSE-EEEEEEHHHHT
T ss_pred EEEEEEEEECHHHHHHcCCCCc-EEEEEEHHHHh
Confidence 9999999999999999999999 99999998763
No 4
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
Probab=100.00 E-value=3.3e-98 Score=857.37 Aligned_cols=464 Identities=22% Similarity=0.311 Sum_probs=400.6
Q ss_pred CceEEEEecCCCcccccCHHHHHHHHHHhcCC-CCCCceeecCCCCCCcceEEEeecCCCCCCeEEEEEEeccccCcCCc
Q 007706 60 EEVIYKIEVPANRYDLLCLEGIAQALRVFNKQ-QEIPKYTLSDVSKDSMLQMHVKPETSSIRPYVVCAVLRDISFDEASY 138 (592)
Q Consensus 60 ~d~i~~ieit~NR~Dlls~~GiARel~a~~g~-~~~p~~~~~~~~~~~~~~i~V~~~~~~~rp~~~~~vi~~V~~~~~~~ 138 (592)
+|+++||++||||+||||++|||||+||+ |. ...|........ ....+.|++++++.||||+|++|+||++.
T Consensus 152 ~D~viei~iTpNR~D~ls~~GiARE~aa~-~~~~~~p~~~~~~~~--~~~~~~v~i~~~~~cp~y~~~~i~~v~~~---- 224 (785)
T 1b7y_B 152 EEVVLDLEVTPNRPDALGLLGLARDLHAL-GYALVEPEAALKAEA--LPLPFALKVEDPEGAPHFTLGYAFGLRVA---- 224 (785)
T ss_dssp CCEEEECCCCTTCGGGGSHHHHHHHHHHT-TCCCCCCCCCCCEEC--CCCSSEEEESCTTTCSEEEEEEEESCCCC----
T ss_pred CceEEEecCCCChHHHhHHHHHHHHHHhc-CCCCCCCCccccccc--cCCceEEEecCcccCceEEEEEEECCCCC----
Confidence 69999999999999999999999999999 76 355544221001 12336777778889999999999999996
Q ss_pred CCHHHHHHHHHhcCCC-CCcEEEeee------------eeccccCCCeEEEecCCCceEEEeCCCcccCChhHHHhhhcc
Q 007706 139 NSFIDLQDKLHQNICR-RRTLVAIGT------------HDLDTLQGPFTYEALPPSHINFVPLKQTRDFTADELMEFYKS 205 (592)
Q Consensus 139 ~s~~~lq~kL~~~~~r-~r~~VdIgn------------~Dld~i~~p~~y~~~~~~~i~f~~L~~~~~~~~~el~~l~~~ 205 (592)
+||+|||+||+++++| +|++|||+| ||+|++++++.++..+++ .+|+||++ +
T Consensus 225 ~Sp~wl~~rL~~~g~r~in~vVDitNyv~le~G~Plha~D~dki~g~i~vr~a~~g-e~~~~Ld~--------------~ 289 (785)
T 1b7y_B 225 PSPLWMQRALFAAGMRPINNVVDVTNYVMLERAQPMHAFDLRFVGEGIAVRRAREG-ERLKTLDG--------------V 289 (785)
T ss_dssp CCCHHHHHHHHHTTCCCCCHHHHHHHHHHHHSSCCCEEEEGGGTBTEEEEEECCTT-CEEEBTTS--------------C
T ss_pred CCHHHHHHHHHHCCCCCccHHHHHHHHHHHHhCCCcccccHhHCCCCeEEEEcCCC-CEEEeCCC--------------c
Confidence 4899999999999888 689999887 677777777777776655 37777765 3
Q ss_pred ccccccccccccCCCceeEEEe----CCCCeeecCCcccCCcceeecCCeEEEEEec-----------------------
Q 007706 206 DLKLKKYLHIIENSPLYPVLYD----QNRTVLSLPPIINGAHSAITLKTKNVFIECT----------------------- 258 (592)
Q Consensus 206 ~~~l~~y~~i~~~~~~~~vI~D----~~~~vlslagIigg~~s~It~~T~nI~iE~a----------------------- 258 (592)
++++. +.++||+| +++ ++|+||||||++|+|+++|||||||+|
T Consensus 290 ~~~l~---------~~~lvi~D~~~~~~~-~~~lagi~gg~~s~v~~~T~~i~lE~a~F~p~~Ir~tar~~~l~tdas~R 359 (785)
T 1b7y_B 290 ERTLH---------PEDLVIAGWRGEESF-PLGLAGVMGGAESEVREDTEAIALEVACFDPVSIRKTARRHGLRTEASHR 359 (785)
T ss_dssp EEECC---------TTCEEEEEEETTEEE-EEEETTTEEBTTTBCCTTCCEEEEEEEECCHHHHHHHHHHTTCCCHHHHH
T ss_pred eeecC---------CCcEEEEeccCCCCC-eEEecceeCCCceEeecCCceEEEEEEeeCHHHHHHHHHHcCCCchhhhh
Confidence 34443 24599999 665 999999999999999999999999999
Q ss_pred ---ccChhhHHHHHHHHHHHHHHhcCCceeEeeEEEEeeCCceeeecCCCceEEEeehhHHhhccCCcCCHHHHHHHHHh
Q 007706 259 ---ATDLTKAKIVLNTMVTIFSEYCKRKYQVEPVEVVYADGRSYVYPDLSAYNMEVSLSYINHTIGVSLEAEEVTSLLNR 335 (592)
Q Consensus 259 ---~~D~~~~~~al~~~~~~l~~~~~~~~~i~~v~v~~~~g~~~~~p~~~~~~i~l~~~~i~~~LG~~l~~~~i~~~L~~ 335 (592)
|+|++.+..|+++++.++.++|++.+. . +..+.+|..++++|.++.++|+++||++++.++|.++|++
T Consensus 360 fERGvD~~~~~~al~~~~~ll~~~~gg~v~-~--------~v~~~~~~~~~~~i~l~~~~i~~~lG~~i~~~~i~~iL~~ 430 (785)
T 1b7y_B 360 FERGVDPLGQVPAQRRALSLLQALAGARVA-E--------ALLEAGSPKPPEAIPFRPEYANRLLGTSYPEAEQIAILKR 430 (785)
T ss_dssp HHHCCCTTCHHHHHHHHHHHHHHHSCCEEE-S--------CCEEECCCCCCCCEEECHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHcCCccc-c--------ceEEeccCCCCeeEEecHHHHHHHhCCCCCHHHHHHHHHH
Confidence 888999999999999999999976321 2 3444566566779999999999999999999999999999
Q ss_pred cCCeEEEcCCCCCcceEEEEcCCCCcccCCCchhHhHHHHHhCCCCCCCCCCCC---C---CCChHHHHHHHHHHHHHHC
Q 007706 336 MQLHAERSASGNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYGYNNIPKRKPAS---V---KPLALNEFSDLMRLEIAMN 409 (592)
Q Consensus 336 lg~~~~~~~~~~~~~~~~V~vP~~R~DI~~~~DliEEIar~yGydni~~~~p~~---~---~~~~~~~~~~~lr~~l~~~ 409 (592)
|||+++..+ +. |.|+||+||+||.|++||||||||+|||||||+++|.. . ..++.+++.+++|+.|+++
T Consensus 431 Lg~~v~~~~---~~--~~V~vPs~R~Di~~e~DliEEVaRiyGydnIp~~~p~~~~~~~~~~~~~~~~~~~~ir~~L~~~ 505 (785)
T 1b7y_B 431 LGCRVEGEG---PT--YRVTPPSHRLDLRLEEDLVEEVARIQGYETIPLALPAFFPAPDNRGVEAPYRKEQRLREVLSGL 505 (785)
T ss_dssp TTCEEESSS---SS--EEEECCTTCCSCCSHHHHHHHHHHHHCGGGSCCCCCCCCCCGGGSSTTHHHHHHHHHHHHHHHH
T ss_pred CCCeEEeCC---ce--EEEECCCcccccCCccHHHHHHHHHhCcccCCccCCCcccccccccCCHHHHHHHHHHHHHHHC
Confidence 999996422 35 99999999999999999999999999999999999965 3 5677889999999999999
Q ss_pred CceEEeeccccChHHHHHHcCCCCCCCCce-eeCCCcCCcccccccchHHHHHHHHhccCCC-C-CeeEEEeCcEeecCC
Q 007706 410 GFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHP-K-PIKIYEVGDVVLLDE 486 (592)
Q Consensus 410 Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v-i~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~-~-~~~lFEiG~V~~~~~ 486 (592)
||+|++||||++++.. +++.. + .+.+ |.||+|+|+++|||||+||||+++++|++|+ + ++++||+|+||. +
T Consensus 506 Gf~Evitysfvs~~~~-~~l~~--~-~~~v~L~NPis~d~svLRtsLlpgLL~~l~~N~~r~~~~~vrlFEiG~Vf~-~- 579 (785)
T 1b7y_B 506 GFQEVYTYSFMDPEDA-RRFRL--D-PPRLLLLNPLAPEKAALRTHLFPGLVRVLKENLDLDRPERALLFEVGRVFR-E- 579 (785)
T ss_dssp TCEECCCCSEECTTHH-HHTTC--C-CCSCEESSCSSTTSSEECSCSHHHHHHHHHHHHHHSCCSCEEEEEEEEEES-S-
T ss_pred CCEEEecCcccCHHHH-HhcCC--C-CCeEEEcCCCchhhhhhhhhhHHHHHHHHHHHhhcCCCCCeEEEEEeeeec-c-
Confidence 9999999999999865 55532 1 4568 9999999999999999999999999999988 5 699999999997 1
Q ss_pred CcccccccccEEEEEEeCCC----------CCHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEecCCCCccCCceEEEEE
Q 007706 487 KKDVGASCRRRLAALYCGAN----------SGFELIHCLVDRIMEVIGTPFVPVGDDTGYYIQRSDEPEFLPGRQASITH 556 (592)
Q Consensus 487 ~~~~~~~~~~~l~~~~~g~~----------~~f~~ikg~le~ll~~lgi~~~~~~~~~~~~~~~~~~~~f~pgr~A~I~~ 556 (592)
.+.++++++++|.. ++|+++||+++++|+.+|++ +.+++..+|+|||||||+|++
T Consensus 580 ------~e~~~lagl~~G~~~~~~w~~~~~vdf~dlKg~le~ll~~lgi~---------~~~~~~~~p~~hPGr~a~I~~ 644 (785)
T 1b7y_B 580 ------REETHLAGLLFGEGVGLPWAKERLSGYFLLKGYLEALFARLGLA---------FRVEAQAFPFLHPGVSGRVLV 644 (785)
T ss_dssp ------SEEEEEEEEEESSCBSCSSSSCCBCSHHHHHHHHHHHHHHHTCC---------CEEECCCCTTEEEEEEEEEEE
T ss_pred ------ChhhEEEEEEECCCcccccCccCCcCHHHHHHHHHHHHHHcCCc---------eEEeecCCCcccCceEEEEEE
Confidence 57889999999976 89999999999999999985 677888889999999999999
Q ss_pred CCEEEEEEEEeCHHHHHhCCCCCCEEEEEEeccccC
Q 007706 557 KGKHVGTFGIVHPEVLNNFDISDPCSFMEIDIENFL 592 (592)
Q Consensus 557 ~g~~iG~~GelhP~vl~~~~l~~pv~~~El~l~~l~ 592 (592)
+|+.+|++|+|||+|+++|||+ |+|+|||+|+ |+
T Consensus 645 ~g~~iG~~G~lHP~Vl~~~~l~-~v~afEl~Ld-L~ 678 (785)
T 1b7y_B 645 EGEEVGFLGALHPEIAQELELP-PVHLFELRLP-LP 678 (785)
T ss_dssp TTEEEEEEEEECHHHHHHTTCC-CCEEEEEEES-CC
T ss_pred CCEEEEEEEEECHHHHHHCCCC-cEEEEEEEee-hh
Confidence 9999999999999999999999 9999999999 64
No 5
>2cxi_A Phenylalanyl-tRNA synthetase beta chain; aminoacyl-tRNA synthetase, ligase, structural genomics; HET: MSE; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=2.6e-77 Score=627.19 Aligned_cols=341 Identities=37% Similarity=0.592 Sum_probs=304.5
Q ss_pred CCeEEechHHHHHHhCCCCCHHHHHHHhhhcCCcccccchhHHHHhhhccccccCCCCCCceEEEEecC-----CCcccc
Q 007706 1 MPTVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEVP-----ANRYDL 75 (592)
Q Consensus 1 Mp~i~~~~~~l~~~~g~~~~~~e~~~~l~~~g~e~e~~~~~~~~~~~~~~~~~~~~~~~~d~i~~ieit-----~NR~Dl 75 (592)
||||+|++++|++++|+++|++||++.||++|.|+++..+ .+++|++| ||||||
T Consensus 1 Mp~i~v~~~~L~~~lg~~~~~~el~~~~~~~G~~~~~~~d---------------------~iiei~it~~~~~pNR~D~ 59 (348)
T 2cxi_A 1 MPKFDVSKSDLERLIGRSFSIEEWEDLVLYAKCELDDVWE---------------------ENGKVYFKLDSKDTNRPDL 59 (348)
T ss_dssp -CEEEEEHHHHHHHHTSCCCHHHHHHHHHHTTEEEEEEEE---------------------ETTEEEEEEEECCTTCGGG
T ss_pred CCEEEECHHHHHHHHCCCCCHHHHHhhhhhccCCHHHcCc---------------------eEEEEEccCCCCCCChHHH
Confidence 9999999999999999999999999999999999998753 37999999 999999
Q ss_pred cCHHHHHHHHHHhcCCC-CCCceeecCCCCCCcceEEEeecCCCCCCeEEEEEEeccccCcCCcCCHHHHHHHHHhcCCC
Q 007706 76 LCLEGIAQALRVFNKQQ-EIPKYTLSDVSKDSMLQMHVKPETSSIRPYVVCAVLRDISFDEASYNSFIDLQDKLHQNICR 154 (592)
Q Consensus 76 ls~~GiARel~a~~g~~-~~p~~~~~~~~~~~~~~i~V~~~~~~~rp~~~~~vi~~V~~~~~~~~s~~~lq~kL~~~~~r 154 (592)
||++||||||++++|.. +.|.+.... ....+.|+....+.||||+|++++||+++++.|+||+|||+|||+++||
T Consensus 60 lS~~GiARelaa~~~~~~~~p~~~~~~----~~~~v~v~~~~~~~~p~~~~~vi~~v~~~~~~~~sp~wlq~rL~~~~G~ 135 (348)
T 2cxi_A 60 WSAEGVARQIKWALGIEKGLPKYEVKK----SNVTVYVDEKLKDIRPYGVYAIVEGLRLDEDSLSQMIQLQEKIALTFGR 135 (348)
T ss_dssp SSHHHHHHHHHHHTTSSCSSCCCCEEE----EEEEEEECGGGTTTSCEEEEEEEESCCCCHHHHHHHHHHHHHHHHTTTT
T ss_pred hHHHHHHHHHHHHhCCCCCCCCccccc----cceEEEECCCccccCCeEEEEEEECcccCcCCCCCHHHHHHHHHHHhCC
Confidence 99999999999999974 567765421 1234445443348999999999999999877788999999999999888
Q ss_pred CCcEEEeeeeeccccCCCeEEEecCCCceEEEeCCCcccCChhHHHhhhccccccccccccccCCCceeEEEeCCCCeee
Q 007706 155 RRTLVAIGTHDLDTLQGPFTYEALPPSHINFVPLKQTRDFTADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNRTVLS 234 (592)
Q Consensus 155 ~r~~VdIgn~Dld~i~~p~~y~~~~~~~i~f~~L~~~~~~~~~el~~l~~~~~~l~~y~~i~~~~~~~~vI~D~~~~vls 234 (592)
+|+.|.|+.||+|++++|+.|++.++++ +|+||++.++++.+++++ .+.++++|.+++++++.+|||+|++|+++|
T Consensus 136 ~r~~Vpi~a~Dldki~g~i~vr~a~~ge-~f~~L~~~~~l~~~e~~~---~~~~~~ky~~~~~~~~~~~vI~D~~~~vls 211 (348)
T 2cxi_A 136 RRREVAIGIFDFDKIKPPIYYKAAEKTE-KFAPLGYKEEMTLEEILE---KHEKGREYGHLIKDKQFYPLLIDSEGNVLS 211 (348)
T ss_dssp TTTSEEEEEEEGGGSCSSEEEEEECTTC-EECBTTCSSCEEHHHHHH---HSHHHHHHGGGTTTSSSEEEEEETTSCEEE
T ss_pred cccCCcccccCHHHCCCCeEEEEcCCCC-EEEECCCccccCHHHhhh---hhccccccchhhccCCceEEEEECCCCEEE
Confidence 8888999999999999999999999887 999999977899999988 557788999999999999999999977999
Q ss_pred cCCcccCCcc-eeecCCeEEEEEecccChhhHHHHHHHHHHHHHHhcCCceeEeeEEEEeeCCceeeecCCCceEEEeeh
Q 007706 235 LPPIINGAHS-AITLKTKNVFIECTATDLTKAKIVLNTMVTIFSEYCKRKYQVEPVEVVYADGRSYVYPDLSAYNMEVSL 313 (592)
Q Consensus 235 lagIigg~~s-~It~~T~nI~iE~a~~D~~~~~~al~~~~~~l~~~~~~~~~i~~v~v~~~~g~~~~~p~~~~~~i~l~~ 313 (592)
+||||||++| +||++|||||||+||+|++.+..|+++++++|+++| + +++++.++++++ ...+|.+.++++.++.
T Consensus 212 l~gi~~g~~sg~Vt~~T~~iliE~ag~d~~~~~~al~~~~~ll~e~g-g--~v~~v~~~~~~~-~~~~~~~~~~~i~~~~ 287 (348)
T 2cxi_A 212 MPPIINSEFTGRVTTDTKNVFIDVTGWKLEKVMLALNVMVTALAERG-G--KIRSVRVVYKDF-EIETPDLTPKEFEVEL 287 (348)
T ss_dssp ETTTEEBSSSSCCCTTCCSEEEEEEESCHHHHHHHHHHHHHHHHTTT-C--EEEEEEEECSSC-EEEECCCCCEEEEEEH
T ss_pred ecCeecCCCcCcccCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHhC-C--CccceEEEecCc-ccccCCCCCeEEEecH
Confidence 9999999999 999999999999999999999999999999999994 2 567887776532 3445767788999999
Q ss_pred hHHhhccCCcCCHHHHHHHHHhcCCeEEEcCCCCCcceEEEEcCCCCcccCCCchhHhHHHHHhCC
Q 007706 314 SYINHTIGVSLEAEEVTSLLNRMQLHAERSASGNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYGY 379 (592)
Q Consensus 314 ~~i~~~LG~~l~~~~i~~~L~~lg~~~~~~~~~~~~~~~~V~vP~~R~DI~~~~DliEEIar~yGy 379 (592)
++|+++||++++.++|.++|++|||+++..+ +. |.|+||+||+||+|++||||||||+|||
T Consensus 288 ~~i~~~lG~~l~~~~i~~iL~~lg~~~~~~~---~~--~~V~vP~~R~DI~~~~DliEEVaR~yGy 348 (348)
T 2cxi_A 288 DYIRKLSGLELNDGEIKELLEKMMYEVEISR---GR--AKLKYPAFRDDIMHARDILEDVLIAYGY 348 (348)
T ss_dssp HHHHHHHTCCCCHHHHHHHHHHTTCEEEEET---TE--EEEEECTTCCCCCSHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCCCCHHHHHHHHHHcCCeEEeCC---Ce--EEEECCCCcccCCcccHHHHHhHHhcCC
Confidence 9999999999999999999999999997532 35 9999999999999999999999999999
No 6
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis}
Probab=100.00 E-value=9.4e-44 Score=350.08 Aligned_cols=190 Identities=23% Similarity=0.400 Sum_probs=165.1
Q ss_pred hHHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCce-eeCCCcCCcccccccchHHHHHHHHhccCCCCC
Q 007706 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKP 472 (592)
Q Consensus 394 ~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v-i~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~ 472 (592)
..+++++++|+.|+++||+|++||||+|++. ++.++... ..++| |+||+|+|+++|||||+||||+++++|++|+.+
T Consensus 5 ~~~~~~~~ir~~L~~~G~~Evitysf~s~~~-~~~~~~~~-~~~~v~l~NPls~e~~vmRtsLlpgLL~~~~~N~~r~~~ 82 (213)
T 3ica_A 5 RRYKWQTVVSEQLVGAGFNEILNNSLTAGSY-YEGLKSHP-REMAVELMNPLSQELNCMRQTLLFGGLETLSHNLRRKHL 82 (213)
T ss_dssp HHHHHHHHHHHHHHHTTCEECCCCSEEEGGG-GTTCSSSC-GGGCCBCSSBSCSSEEEECSSSHHHHHHHHHHHHTTTCS
T ss_pred HHHHHHHHHHHHHHHCCCceeeeccCCCHHH-HhhhcccC-cCCeEEecCCccHHHHHHHHHhHHHHHHHHHHHHcCCCC
Confidence 4678999999999999999999999999874 55554322 24578 999999999999999999999999999999987
Q ss_pred -eeEEEeCcEeecCCCcc------cccccccEEEEEEeCC-----------CCCHHHHHHHHHHHHHHhCCCCCCCCCCc
Q 007706 473 -IKIYEVGDVVLLDEKKD------VGASCRRRLAALYCGA-----------NSGFELIHCLVDRIMEVIGTPFVPVGDDT 534 (592)
Q Consensus 473 -~~lFEiG~V~~~~~~~~------~~~~~~~~l~~~~~g~-----------~~~f~~ikg~le~ll~~lgi~~~~~~~~~ 534 (592)
+++||||+||.+++... .+..+.++++++++|. .++|+++||+|+++|+.+|++..
T Consensus 83 ~~~lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~d~Kg~ve~ll~~lgi~~~------ 156 (213)
T 3ica_A 83 SLYLFEWGKCYRFHAAKRTDETPLAAYAEDDRLGIWICGQRVHNSWAHPEEPTSVFELKAVVEQVLCRVGIETG------ 156 (213)
T ss_dssp EEEEEEEEEEEEEECCCC--CCSSCEEEEEEEEEEEEEEBCCC-----CCCBCCHHHHHHHHHHHHHHTTCCGG------
T ss_pred CeeEEEeeeEEecCCccccccccccccchhhEEEEEEeCCCCcccCCCCCCCcCHHHHHHHHHHHHHHhCCCcc------
Confidence 99999999998754210 2246788999999883 57999999999999999998621
Q ss_pred cEEEEecCCCCccCCceEEEEECCEEEEEEEEeCHHHHHhCCCCCCEEEEEEeccccC
Q 007706 535 GYYIQRSDEPEFLPGRQASITHKGKHVGTFGIVHPEVLNNFDISDPCSFMEIDIENFL 592 (592)
Q Consensus 535 ~~~~~~~~~~~f~pgr~A~I~~~g~~iG~~GelhP~vl~~~~l~~pv~~~El~l~~l~ 592 (592)
.+++++..+++|||||+|+ +++|+.||++|+|||+|+++|||+.|||+|||||+.|+
T Consensus 157 ~~~~~~~~~~~~hpgr~a~-~~~g~~iG~~G~lhP~v~~~~~l~~~v~~~Eldl~~l~ 213 (213)
T 3ica_A 157 AYTLKTADNDLYASAMEVK-TRSGKLLGTFGTVSTELIKRFEIEQPVYFAELLWDALM 213 (213)
T ss_dssp GEEEEECCCTTEEEEEEEE-ETTCCEEEEEEEECHHHHHHTTCCSCEEEEEEEHHHHC
T ss_pred ceEEeeccCCCCCCCeEEE-eECCcEEEEEeEECHHHHHHcCCCCCeEEEEEEhHHhC
Confidence 1788888899999999999 88999999999999999999999999999999999874
No 7
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis}
Probab=100.00 E-value=8.4e-44 Score=350.46 Aligned_cols=191 Identities=22% Similarity=0.371 Sum_probs=160.1
Q ss_pred ChHHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCce-eeCCCcCCcccccccchHHHHHHHHhccCCCC
Q 007706 393 LALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPK 471 (592)
Q Consensus 393 ~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v-i~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~ 471 (592)
+..+++.+++|+.|+++||+|++||||+|++. ++.++... ..++| |+||+|+|+++|||||+||||+++++|++|+.
T Consensus 4 d~~~~~~~~ir~~l~~~G~~Evitysf~~~~~-~~~~~~~~-~~~~v~l~NPls~e~~vmRtsLlpgLL~~~~~N~~r~~ 81 (213)
T 3ig2_A 4 DKSNKLQNLVAEQLVGCGFNEILNNSLTRAAY-YDGLESYP-SKNLVMLLNPLSADLNCMRQTLLFGGLESIAHNANRKN 81 (213)
T ss_dssp CHHHHHHHHHHHHHHHTTCEECCCCSEECGGG-GTTCSSSC-GGGCEEBSSGGGCSCCEECSCSHHHHHHHHHHC-----
T ss_pred CHHHHHHHHHHHHHHHCCCeEEeccccCCHHH-HHhhcccC-cCCeEEEeCCcchhHHHHHHHhHHHHHHHHHHHhcCCC
Confidence 45678999999999999999999999999874 55554322 24679 99999999999999999999999999999987
Q ss_pred C-eeEEEeCcEeecCCCc------ccccccccEEEEEEeC-----------CCCCHHHHHHHHHHHHHHhCCCCCCCCCC
Q 007706 472 P-IKIYEVGDVVLLDEKK------DVGASCRRRLAALYCG-----------ANSGFELIHCLVDRIMEVIGTPFVPVGDD 533 (592)
Q Consensus 472 ~-~~lFEiG~V~~~~~~~------~~~~~~~~~l~~~~~g-----------~~~~f~~ikg~le~ll~~lgi~~~~~~~~ 533 (592)
+ +++||+|+||.+++.. ..+..+.++++++++| ..++|+++||+|+++|..+|++..
T Consensus 82 ~~v~lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~dlKg~ve~ll~~lg~~~~----- 156 (213)
T 3ig2_A 82 ADLKFFEFGNCYHFDAEKKNPEKVLAPYSEDYHLGLWVTGKMVSNSWAHADENTSVYELKAYVENIFKRLGLDLH----- 156 (213)
T ss_dssp -CCEEEEEEEEEEECC----------CEEEEEEEEEEEEEEECCSCC----CHHHHHHHHHHHHHHHHHTTBCGG-----
T ss_pred CCeeEEEeeeEEecCcccccccccccccchhHEEEEEEECCCccccCCCCCCCcCHHHHHHHHHHHHHHhCCCcc-----
Confidence 6 9999999999976421 0234678899999998 346899999999999999998621
Q ss_pred ccEEEEecCCCCccCCceEEEEECCEEEEEEEEeCHHHHHhCCCCCCEEEEEEeccccC
Q 007706 534 TGYYIQRSDEPEFLPGRQASITHKGKHVGTFGIVHPEVLNNFDISDPCSFMEIDIENFL 592 (592)
Q Consensus 534 ~~~~~~~~~~~~f~pgr~A~I~~~g~~iG~~GelhP~vl~~~~l~~pv~~~El~l~~l~ 592 (592)
.+++++..+++|||||+|+ +++|+.||++|+|||+|+++|||+.|||+|||||+.|+
T Consensus 157 -~~~~~~~~~~~~hPgr~a~-~~~g~~iG~~G~lhP~v~~~~~l~~~v~~~Eldl~~l~ 213 (213)
T 3ig2_A 157 -SLVVGNLSDDIYSTALTVN-TKGGKRLATFGVVTKKMLKAFDVDNEVYYADLNWKELM 213 (213)
T ss_dssp -GCEEEEECSSSEEEEEEEE-CTTCCEEEEEEEECHHHHHHTTCCEEEEEEEEETGGGC
T ss_pred -ceEEeeccCCCCCCCeEEE-eECCcEEEEEeEECHHHHHHcCcCCCeEEEEEEhHHhC
Confidence 1678888899999999999 88999999999999999999999999999999999875
No 8
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A*
Probab=100.00 E-value=2.1e-40 Score=360.14 Aligned_cols=227 Identities=17% Similarity=0.263 Sum_probs=194.0
Q ss_pred CCCCcccCCCchhHhHHHHHhCCCCCCCCCCCCC-CCChHHHHHHHHHHHHHHCCceEEeeccccChHHHHHHc------
Q 007706 357 PPTRSDVLHPCDVMEDVAIAYGYNNIPKRKPASV-KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTML------ 429 (592)
Q Consensus 357 P~~R~DI~~~~DliEEIar~yGydni~~~~p~~~-~~~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~------ 429 (592)
+..|.||.+++|++|||||+||||+++++++... ..+|.+++.+++|+.|+++||+|++||+|+++..++...
T Consensus 10 ~~tR~Di~~~~DliEEvaR~yGyd~i~~~~~~~~g~~hp~~~~~~~Ir~~l~~lGF~Ev~~~s~~s~~~n~p~~~Hpar~ 89 (534)
T 2du3_A 10 ELAEKDFEAAWKAGKEILAERSPNELYPRVGFSFGKEHPLFATIQRLREAYLSIGFSEVVNPLIVEDVHVKKQFGREALA 89 (534)
T ss_dssp HHHHHCHHHHHHHGGGGSCCCCGGGSTTSSCCCCCCCCHHHHHHHHHHHHHHHTTCEECCCCCEEETHHHHHHHGGGHHH
T ss_pred cCChhhcchhhHHHhhhhhccCCCCCCCccCCCCCCCCHHHHHHHHHHHHHHHCCCEEEeCceEeChhhcccccccchhh
Confidence 4578999999999999999999999998874333 789999999999999999999999999999997622110
Q ss_pred --C--C--CC--------------------------------------------C------------CCCce-eeCCCcC
Q 007706 430 --N--R--QT--------------------------------------------D------------ESTAV-VGNPRTS 446 (592)
Q Consensus 430 --~--~--~~--------------------------------------------~------------~~~~v-i~NP~s~ 446 (592)
. . .. + +...+ ++||+|+
T Consensus 90 ~~Dr~fyl~~~~~~~~g~~~~~~e~I~~~~G~~l~~~~l~~~~~~y~~~~~~~~~~~~~v~~vh~~fds~~v~l~NPis~ 169 (534)
T 2du3_A 90 VLDRCFYLATLPKPNVGISAEKIRQIEAITKREVDSKPLQEIFHRYKKGEIDGDDLSYLIAEVLDVDDITAVKILDEVFP 169 (534)
T ss_dssp HHTTSCEEEECCCCCTTGGGTTTTTTSCCCCSSCCCSCTTTTTTHHHHSCCSGGGTTTTTTSSSCSGGGSHHHHHHTTCT
T ss_pred hccceeeccCcccccccccchhhhhhhhhccccchhhhhhhhhhhhhccccccccccccccchhcccccceeeecCCCCh
Confidence 0 0 00 0 01127 9999999
Q ss_pred C---------cccccccchHHHHHHHHhccCCC-CCeeEEEeCcEeecCCC-cccccccccEEEEEEeCCCCCHHHHHHH
Q 007706 447 D---------FEVVRTTLMPGILKTIGHNKDHP-KPIKIYEVGDVVLLDEK-KDVGASCRRRLAALYCGANSGFELIHCL 515 (592)
Q Consensus 447 e---------~~~lR~SLlpgLL~~~~~N~~~~-~~~~lFEiG~V~~~~~~-~~~~~~~~~~l~~~~~g~~~~f~~ikg~ 515 (592)
| +++|||||+||||.++++|++++ .|+++||+|+||..+.. +.++..+.++++++++|...+|+++||+
T Consensus 170 e~~~~~~~~~~svLRTsLlPgLL~~lr~N~~r~~~pvrLFEIG~VFr~d~~~d~th~~Ef~qLagli~G~~vdf~dLKgi 249 (534)
T 2du3_A 170 EFKELKPISSTLTLRSHMTTGWFITLSHIADKLPLPIKLFSIDRCFRREQGEDATRLYTYFSASCVLVDEELSVDDGKAV 249 (534)
T ss_dssp TTTTCCCEEEEEEECSSHHHHHHHHHHTTTTTSCSSEEEEEEEEEECCCTTCSSSCCSEEEEEEEEEECSSCCHHHHHHH
T ss_pred hhccccccccccccCccchhhHHHHHHHHHhCCCCCeeEEEEeeEEecCccccccccceeeEEEEEEECCCCCHHHHHHH
Confidence 9 79999999999999999999885 46999999999987543 3345678899999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCCCccEEEEecCCC--CccCCceEEEEE-------------CC-EEEEEEEEeCHHHHHhCCCCC
Q 007706 516 VDRIMEVIGTPFVPVGDDTGYYIQRSDEP--EFLPGRQASITH-------------KG-KHVGTFGIVHPEVLNNFDISD 579 (592)
Q Consensus 516 le~ll~~lgi~~~~~~~~~~~~~~~~~~~--~f~pgr~A~I~~-------------~g-~~iG~~GelhP~vl~~~~l~~ 579 (592)
++.+|+.+|+.. +.+++++++ +||||++|+|++ +| ..||++|++||+|+++|||+.
T Consensus 250 lE~LL~~LGi~~--------~r~~~~~~~~~~yhPgt~aeI~v~~~~~~g~~~~~~~gW~eIG~~G~vhP~VL~~~gi~~ 321 (534)
T 2du3_A 250 AEALLRQFGFEN--------FRFRKDEKRSKYYIPDTQTEVFAFHPKLVGSSTKYSDGWIEIATFGIYSPTALAEYDIPY 321 (534)
T ss_dssp HHHHHGGGTCCE--------EEEEECTTCCTTBCTTTCEEEEEEEEEEETCSSSCTEEEEEEEEEEEBCHHHHHTTTCCS
T ss_pred HHHHHHHcCCCe--------EEEEECCCCcccccCCeEEEEEEEeccccccccccCCCCEEEEEEEEECHHHHHHcCCCC
Confidence 999999999852 778887766 599999999988 57 899999999999999999999
Q ss_pred CEEEEEEecccc
Q 007706 580 PCSFMEIDIENF 591 (592)
Q Consensus 580 pv~~~El~l~~l 591 (592)
|+++|||+|+.|
T Consensus 322 ~v~afeLgLErL 333 (534)
T 2du3_A 322 PVMNLGLGVERL 333 (534)
T ss_dssp CEEEEEEEHHHH
T ss_pred cEEEEEecHHHH
Confidence 999999999865
No 9
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A*
Probab=100.00 E-value=4.3e-39 Score=331.50 Aligned_cols=213 Identities=16% Similarity=0.151 Sum_probs=176.6
Q ss_pred CCchhHhHHHHHhCCCCCCCCCCCCC----CCChHHHHHHHHHHHHHHCCceEEeeccccChHH-HHHHcCCCCCC----
Q 007706 365 HPCDVMEDVAIAYGYNNIPKRKPASV----KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKE-ISTMLNRQTDE---- 435 (592)
Q Consensus 365 ~~~DliEEIar~yGydni~~~~p~~~----~~~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~-~~~~~~~~~~~---- 435 (592)
.++||||||||+|||||||.++|... ..++.+++.+++|+.|+++||+|+ +|+|++.+. +++.++.+.+.
T Consensus 21 ~~~DliEEv~R~~gyd~i~~tlp~~~~~~g~~~~~~~~~~~iR~~l~~~Gf~Ev-~~s~l~~~~~nf~~l~~~~~~par~ 99 (294)
T 2rhq_A 21 MGTELMEKLNQQLAEETIDVTLPSRQISIGSKHPLTRTVEEIEDLFLGLGYEIV-DGYEVEQDYYNFEALNLPKSHPARD 99 (294)
T ss_dssp ----CTTHHHHHTTTTCCCTTSCCCCCCCCCCCHHHHHHHHHHHHHHTTTCEEC-CCCSEEEHHHHTGGGTCCTTCGGGC
T ss_pred CcchHHHHHHHHhCcccCCccCCCcccCCCCCCHHHHHHHHHHHHHHHCCCEEE-cCcceeeehhhHHhhCCCCCccccc
Confidence 47799999999999999999998542 678999999999999999999999 999998753 45555433221
Q ss_pred -CCce-eeCCCcCCcccccccchHHHHHHHHhccCCCCCeeEEEeCcEeecCCCcccccccccEEEEEEeCCCCCHHHHH
Q 007706 436 -STAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIH 513 (592)
Q Consensus 436 -~~~v-i~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~g~~~~f~~ik 513 (592)
.+.+ |. |+++|||||+|+|++++++|+ +..++++||+|+||.+++.+.++..+..+++++++|..++|+++|
T Consensus 100 ~~d~~~l~-----e~~vLRtsl~p~ll~~l~~N~-~~~~~riFEiG~Vfr~d~~d~~h~~Ef~~Le~~~~g~~~df~dlK 173 (294)
T 2rhq_A 100 MQDSFYIT-----DEILMRTHTSPVQARTMEKRN-GQGPVKIICPGKVYRRDSDDATHSHQFTQIEGLVVDKNIKMSDLK 173 (294)
T ss_dssp TTTSCBSS-----SSEEECSSSHHHHHHHHHHTT-TCSCEEEEEEEEEECCCCCBTTBCSEEEEEEEEEEESSCCHHHHH
T ss_pred cCCcEEEc-----CcceeeccCHHHHHHHHHhcC-CCCCccEEEEcCEEecCCCCCCCCChhhEEEEEEECCCCCHHHHH
Confidence 1135 52 899999999999999999998 445799999999998754222344578899999999999999999
Q ss_pred HHHHHHHHHh-CCCCCCCCCCccEEEEecCCCCccCCceEEEEE---CC-----------EEEEEEEEeCHHHHHhCCCC
Q 007706 514 CLVDRIMEVI-GTPFVPVGDDTGYYIQRSDEPEFLPGRQASITH---KG-----------KHVGTFGIVHPEVLNNFDIS 578 (592)
Q Consensus 514 g~le~ll~~l-gi~~~~~~~~~~~~~~~~~~~~f~pgr~A~I~~---~g-----------~~iG~~GelhP~vl~~~~l~ 578 (592)
|.|+.+++.+ |+... +.++++.+|++|||++|+|++ +| +.||++|+|||+|+++|||+
T Consensus 174 g~le~ll~~l~g~~~~-------~~~~~~~~p~~hPg~~a~i~~~~~~g~~~~~~~~~~w~eiG~~G~vhP~Vl~~~gl~ 246 (294)
T 2rhq_A 174 GTLELVAKKLFGADRE-------IRLRPSYFPFTEPSVEVDVSCFKCKGKGCNVCKHTGWIEILGAGMVHPNVLEMAGFD 246 (294)
T ss_dssp HHHHHHHHHHHCTTCC-------EEEEECCBTTEEEEEEEEEECSSSTTSCCTTTTTSSEEEEEEEEEECHHHHHTTTCC
T ss_pred HHHHHHHHHHhCCCcE-------EEEecCcCCCCCCcEEEEEEEEccCCcccccccCCCCeEEEEEeeECHHHHHHcCCC
Confidence 9999999988 87421 677887889999999999998 77 58999999999999999998
Q ss_pred C---CEEEEEEecccc
Q 007706 579 D---PCSFMEIDIENF 591 (592)
Q Consensus 579 ~---pv~~~El~l~~l 591 (592)
. |+++|||+|+.|
T Consensus 247 ~~~~~~~afel~le~L 262 (294)
T 2rhq_A 247 SNEYSGFAFGMGPDRI 262 (294)
T ss_dssp TTTCEEEEEEECHHHH
T ss_pred CCcCeEEEEEEeHHHH
Confidence 5 899999999865
No 10
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Probab=99.97 E-value=1.2e-31 Score=291.00 Aligned_cols=208 Identities=14% Similarity=0.256 Sum_probs=172.0
Q ss_pred HHHHhCCCCCCCCCCCC---C-CCChHHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCC-CCCC-ce-eeCCCc
Q 007706 373 VAIAYGYNNIPKRKPAS---V-KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQT-DEST-AV-VGNPRT 445 (592)
Q Consensus 373 Iar~yGydni~~~~p~~---~-~~~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~-~~~~-~v-i~NP~s 445 (592)
+++.|++| .++|.. . +.+|.+++.+.+|+.|.++||+|+.++.++|..+++..++.+. +-.+ .+ |.||..
T Consensus 36 ~~~~~~~d---~~~P~~~~~~G~~HPl~~~~~~ir~~f~~mGF~e~~~p~ies~~~n~pq~ghpAr~~~D~tfyl~~p~~ 112 (549)
T 2du7_A 36 LIKDKHID---NKYPRLKPVYGKPHPVMETIERLRQAYLRMGFEEMINPVIVDEMEIYKQFGPEAMAVLDRCFYLAGLPR 112 (549)
T ss_dssp SSCCCTTT---TSSSSSCCCCCCCCHHHHHHHHHHHHHHTTTCEECCCCSCEEHHHHHHHTCTTHHHHGGGCCEEECCCC
T ss_pred hhhccCcC---CCCCCCCCCCCCcCHHHHHHHHHHHHHHHCCCEEeeCCeEeehHHhCCCcCCCcccccCceEEECCCCC
Confidence 45566666 344432 2 8899999999999999999999999999999998866553211 0023 67 998842
Q ss_pred --------------------------------------------------------------------C---------Cc
Q 007706 446 --------------------------------------------------------------------S---------DF 448 (592)
Q Consensus 446 --------------------------------------------------------------------~---------e~ 448 (592)
. ++
T Consensus 113 ~~~g~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~v~~~~~~~~s~g~~~~d~~~~e~~~~~~~~e~ 192 (549)
T 2du7_A 113 PDVGLGNEKVEIIKNLGIDIDEEKKERLREVLHLYKKGAIDGDDLVFEIAKALNVSNEMGLKVLETAFPEFKDLKPESTT 192 (549)
T ss_dssp CCCSSSSTTSCCSSCSCCCCSCCCSSSCCCSCCCSSSSCCCSSSCCSCCCSSSSCCSCSCCCSSSSSCTTSSSCCCCEEE
T ss_pred cccccchhhhhhhhhcccccccchhhhhhhhhhhhccCCCchhhhhhHhhhhhhcccccccccccccchhhccccccccc
Confidence 1 47
Q ss_pred ccccccchHHHHHHHHhccCCCC-CeeEEEeCcEeecCCC-cccccccccEEEEEEeCCCCCHHHHHHHHHHHHHHhCCC
Q 007706 449 EVVRTTLMPGILKTIGHNKDHPK-PIKIYEVGDVVLLDEK-KDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVIGTP 526 (592)
Q Consensus 449 ~~lR~SLlpgLL~~~~~N~~~~~-~~~lFEiG~V~~~~~~-~~~~~~~~~~l~~~~~g~~~~f~~ikg~le~ll~~lgi~ 526 (592)
++|||||+||||.++++|++++. |+++||+|+||.++.. +.++..+.++++++++|..++|+++||+|+++|+.+|+.
T Consensus 193 svLRTsLlPGLL~~vr~N~~r~~~pvrlFEiGrVFr~D~~~d~th~~ef~qLaglv~G~~vdF~DLKG~Le~ll~~LGi~ 272 (549)
T 2du7_A 193 LTLRSHMTSGWFITLSSLIKKRKLPLKLFSIDRCFRREQREDRSHLMSYHSASCVVVGEDVSVDDGKVVAEGLLAQFGFT 272 (549)
T ss_dssp EECCSTTHHHHHHHHHTTTTTSCSSEEEEEEEEECCCCSSCSSSCCSCEEEEEEEEECTTCCHHHHHHHHHHHHGGGTCC
T ss_pred cccccccchhHHHHHHHHHhcCCCCeEEEEEeeEEecCCcccCcCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 89999999999999999988764 6999999999987542 234567899999999999999999999999999999974
Q ss_pred CCCCCCCccEEEEecC--CCCccCCceEEEEEC-----C-EEEEEEEEeCHHHHHhCCCCCCEEEEEEecccc
Q 007706 527 FVPVGDDTGYYIQRSD--EPEFLPGRQASITHK-----G-KHVGTFGIVHPEVLNNFDISDPCSFMEIDIENF 591 (592)
Q Consensus 527 ~~~~~~~~~~~~~~~~--~~~f~pgr~A~I~~~-----g-~~iG~~GelhP~vl~~~~l~~pv~~~El~l~~l 591 (592)
. ++++++. +++|||||+|+|.++ | +.||++|+|||+|+++|||+.|+++|||+|+.|
T Consensus 273 ~--------~rfrps~~~~p~yhPGr~AeI~v~~~g~~gw~eIG~~GeVHP~VLk~~gId~~v~aFELgLErL 337 (549)
T 2du7_A 273 K--------FKFKPDEKKSKYYTPETQTEVYAYHPKLGEWIEVATFGVYSPIALAKYNIDVPVMNLGLGVERL 337 (549)
T ss_dssp C--------CCCEECTTCCTTBCTTTCEEEEECCSSSSCSEEEEEEEEBCHHHHHHTTCCSCEEEEEEBHHHH
T ss_pred e--------EEEEECCCCCcccCCceEEEEEEecCCCCCcEEEEEEEEECHHHHHHcCCCCCeEEEEEeHHHH
Confidence 2 5666653 688999999999996 5 899999999999999999999999999999865
No 11
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=99.97 E-value=5.5e-31 Score=287.06 Aligned_cols=193 Identities=13% Similarity=0.253 Sum_probs=164.4
Q ss_pred CCChHHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCC-CCCC-ce-eeCCCc----------------------
Q 007706 391 KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQT-DEST-AV-VGNPRT---------------------- 445 (592)
Q Consensus 391 ~~~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~-~~~~-~v-i~NP~s---------------------- 445 (592)
+.+|.+++.+++|+.+.++||+|+.++.+++..+++..++.+. +-.+ .+ |.||..
T Consensus 63 ~~HPl~~~~~~IR~if~~mGF~E~~~p~vese~~n~pq~gHpAR~~~D~tFyl~~P~~~~vg~~~~~~~~i~~~g~~is~ 142 (648)
T 2odr_B 63 KTHPVNDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEKISQIEKLGIKVSE 142 (648)
T ss_dssp BCCHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHGGGHHHHHHTCEEEEBCCC----------------------
T ss_pred CCCHHHHHHHHHHHHHHHCCCEEeeCCEEeehhhhCCCcCCCccccCCceEEECCCCCCccccchhhhhhhhhcccccch
Confidence 7899999999999999999999999999999988765542110 0012 67 999851
Q ss_pred ---------------------------------------------C---------CcccccccchHHHHHHHHhccCCCC
Q 007706 446 ---------------------------------------------S---------DFEVVRTTLMPGILKTIGHNKDHPK 471 (592)
Q Consensus 446 ---------------------------------------------~---------e~~~lR~SLlpgLL~~~~~N~~~~~ 471 (592)
. ++++|||||+||||.++++|++++.
T Consensus 143 ~~~~l~~~~~~yk~~~~~~~dl~~~v~~~h~~~~s~g~~~~~~~~~e~~~l~~~~~~sVLRTsLlPGLL~~vr~N~~R~~ 222 (648)
T 2odr_B 143 HKESLQKILHGYKKGTLDGDDLVLEISNALEISSEMGLKILEDVFPEFKDLTAVSSKLTLRSHMTSGWFLTVSDLMNKKP 222 (648)
T ss_dssp -----------------------------------------------CCCCCCBCCSEEECCCTHHHHHHHHHHHTTTSC
T ss_pred hhhhhhhhhhhhccCCCChHHHHHHHHHHhccccccceeeccccChhhhccccccccCcccccchhhHHHHHHHHHhcCC
Confidence 1 4899999999999999999988764
Q ss_pred -CeeEEEeCcEeecCCC-cccccccccEEEEEEeCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEecC--CCCcc
Q 007706 472 -PIKIYEVGDVVLLDEK-KDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVIGTPFVPVGDDTGYYIQRSD--EPEFL 547 (592)
Q Consensus 472 -~~~lFEiG~V~~~~~~-~~~~~~~~~~l~~~~~g~~~~f~~ikg~le~ll~~lgi~~~~~~~~~~~~~~~~~--~~~f~ 547 (592)
|+++||+|+||.++.. +.++..+.++++++++|...+|+++||+|+.+|+.+|+.. ++++++. +++||
T Consensus 223 ~pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vdF~DLKGvLE~LL~~LGi~~--------vrfrpse~~~p~yh 294 (648)
T 2odr_B 223 LPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQFGFTN--------FKFIPDEKKSKYYT 294 (648)
T ss_dssp SCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTTTCCC--------EEEEECTTCCTTBC
T ss_pred CCeEEEEEeeEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHcCCCe--------EEEEECCCCCcCcC
Confidence 6999999999986543 3345678999999999999999999999999999999742 7888763 78899
Q ss_pred CCceEEEEEC-----C-EEEEEEEEeCHHHHHhCCCCCCEEEEEEecccc
Q 007706 548 PGRQASITHK-----G-KHVGTFGIVHPEVLNNFDISDPCSFMEIDIENF 591 (592)
Q Consensus 548 pgr~A~I~~~-----g-~~iG~~GelhP~vl~~~~l~~pv~~~El~l~~l 591 (592)
|||+|+|.++ | +.||++|+|||+|+++|||+.|+++|||+|+.|
T Consensus 295 PGreAEI~v~~~g~~GW~EIG~~GeVHP~VLk~~GId~~V~AFELgLErL 344 (648)
T 2odr_B 295 PETQTEVYAYHPKLKEWLEVATFGVYSPVALSKYGIDVPVMNLGLGVERL 344 (648)
T ss_dssp TTCCEEEEEEETTTTEEEEEEEEEEBCHHHHHHTTCCSCEEEEEEEHHHH
T ss_pred CceEEEEEEecCCCCCCEEEEEEeEECHHHHHHcCCCCCEEEEEEeHHHH
Confidence 9999999985 4 799999999999999999999999999999865
No 12
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=99.97 E-value=6.2e-31 Score=287.01 Aligned_cols=202 Identities=14% Similarity=0.254 Sum_probs=168.3
Q ss_pred CCCCCCCC---C-CCChHHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCC-CCCC-ce-eeCCCc---------
Q 007706 382 IPKRKPAS---V-KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQT-DEST-AV-VGNPRT--------- 445 (592)
Q Consensus 382 i~~~~p~~---~-~~~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~-~~~~-~v-i~NP~s--------- 445 (592)
|+.++|.. . +.+|.+++.+++|+.+.++||+|+.++.+++..+++..++.+. +-.+ .+ |.||..
T Consensus 50 id~~~P~~~~~~G~~HPl~~~~~~IReif~~mGF~E~~~p~vese~~n~pq~gHPAR~~~D~tFyL~~P~~~~vg~~~~~ 129 (685)
T 2odr_D 50 INESYPRIKPVFGKTHPVNDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEK 129 (685)
T ss_dssp GGGSTTTCCCCCCBCCHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHGGGHHHHHHTCEEEEBCCC---------
T ss_pred cCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHCCCEEeeCCEEeehHHhCCCcCCCccccCCcEEEECCCCCCccccchhh
Confidence 44455543 2 7899999999999999999999999999999988765542110 0012 67 998851
Q ss_pred ----------------------------------------------------------C---------CcccccccchHH
Q 007706 446 ----------------------------------------------------------S---------DFEVVRTTLMPG 458 (592)
Q Consensus 446 ----------------------------------------------------------~---------e~~~lR~SLlpg 458 (592)
. ++++|||||+||
T Consensus 130 ~~~i~~~g~~is~~~~~l~~~~h~yk~~~~~~~dl~~~v~~~h~~~~s~g~~~~~~~~~ef~~l~~~a~~sVLRTSLlPG 209 (685)
T 2odr_D 130 ISQIEKLGIKVSEHKESLQKILHGYKKGTLDGDDLVLEISNALEISSEMGLKILEDVFPEFKDLTAVSSKLTLRSHMTSG 209 (685)
T ss_dssp ------------------------------------------------------------CCCCCCBCCSEEECCCTHHH
T ss_pred hhhhhhcccccchhhhhhhhhhhhhccCCCChHHHHHHHHHHhccccccceeeccccChhhhccCcccccCcccccchhh
Confidence 1 489999999999
Q ss_pred HHHHHHhccCCCC-CeeEEEeCcEeecCCC-cccccccccEEEEEEeCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccE
Q 007706 459 ILKTIGHNKDHPK-PIKIYEVGDVVLLDEK-KDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVIGTPFVPVGDDTGY 536 (592)
Q Consensus 459 LL~~~~~N~~~~~-~~~lFEiG~V~~~~~~-~~~~~~~~~~l~~~~~g~~~~f~~ikg~le~ll~~lgi~~~~~~~~~~~ 536 (592)
||.++++|++++. |+++||+|+||.++.. +.++..+.++++++++|...+|+++||+|+.+|+.+|+.. +
T Consensus 210 LL~~vr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vDF~DLKGvLE~LL~~LGi~~--------v 281 (685)
T 2odr_D 210 WFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQFGFTN--------F 281 (685)
T ss_dssp HHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTTTCCC--------E
T ss_pred HHHHHHHHHhCCCCCeEEEEeccEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHcCCCe--------E
Confidence 9999999988764 6999999999986543 3345678999999999999999999999999999999742 7
Q ss_pred EEEecC--CCCccCCceEEEEEC-----C-EEEEEEEEeCHHHHHhCCCCCCEEEEEEecccc
Q 007706 537 YIQRSD--EPEFLPGRQASITHK-----G-KHVGTFGIVHPEVLNNFDISDPCSFMEIDIENF 591 (592)
Q Consensus 537 ~~~~~~--~~~f~pgr~A~I~~~-----g-~~iG~~GelhP~vl~~~~l~~pv~~~El~l~~l 591 (592)
+++++. +++|||||+|+|.++ | +.||++|+|||+|+++|||+.|+++|||+|+.|
T Consensus 282 rfrpse~~~p~yHPGreAEI~V~~~g~~GW~EIG~~GeVHPeVLk~~GId~~V~AFELgLErL 344 (685)
T 2odr_D 282 KFIPDEKKSKYYTPETQTEVYAYHPKLKEWLEVATFGVYSPVALSKYGIDVPVMNLGLGVERL 344 (685)
T ss_dssp EEEECTTCCTTBCTTCCEEEEEEETTTTEEEEEEEEEEBCHHHHHHTTCCSCEEEEEEEHHHH
T ss_pred EEEECCCCCCCcCCceEEEEEEecCCCCCCEEEEEEeEECHHHHHHcCCCCCEEEEEEeHHHH
Confidence 888763 788999999999985 4 799999999999999999999999999999865
No 13
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=99.97 E-value=5.8e-31 Score=287.02 Aligned_cols=203 Identities=14% Similarity=0.254 Sum_probs=168.8
Q ss_pred CCCCCCCCC---C-CCChHHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCC-CCCC-ce-eeCCCc--------
Q 007706 381 NIPKRKPAS---V-KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQT-DEST-AV-VGNPRT-------- 445 (592)
Q Consensus 381 ni~~~~p~~---~-~~~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~-~~~~-~v-i~NP~s-------- 445 (592)
+|+.++|.. . +.+|.+++.+++|+.+.++||+|+.++.+++..+++..++.+. +-.+ .+ |.||..
T Consensus 49 ~id~~~P~~~~~~G~~HPl~~~~~~IR~if~~mGF~E~~~p~vese~~n~pq~gHpAR~~~D~tFyL~~P~~~~vg~~~~ 128 (665)
T 2odr_A 49 KINESYPRIKPVFGKTHPVNDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDE 128 (665)
T ss_dssp CTTTSGGGSCCCCCBCCHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHGGGHHHHHHTCEEEEBCCC--------
T ss_pred ccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEeeCCEEeeehhhCCCcCCCccccCCcEEEECCCCCCccccchh
Confidence 344555533 2 7899999999999999999999999999999988765542110 0012 67 999851
Q ss_pred -----------------------------------------------------------C---------CcccccccchH
Q 007706 446 -----------------------------------------------------------S---------DFEVVRTTLMP 457 (592)
Q Consensus 446 -----------------------------------------------------------~---------e~~~lR~SLlp 457 (592)
. ++++|||||+|
T Consensus 129 ~~~~i~~~g~~is~~~~~l~~~~~~yk~~~~~~~dl~~~v~~~h~~~~s~g~~~~~~~~~e~~~l~~~a~~sVLRTSLlP 208 (665)
T 2odr_A 129 KISQIEKLGIKVSEHKESLQKILHGYKKGTLDGDDLVLEISNALEISSEMGLKILEDVFPEFKDLTAVSSKLTLRSHMTS 208 (665)
T ss_dssp -------------------------------------------------------------CCCCCCBCCSEEECCCTHH
T ss_pred hhhhhhhcccccchhhhhhhhhhhhhccCCCChHHHHHHHHHHhccccccceeeccccChhhhccCcccccCcccccchh
Confidence 1 48999999999
Q ss_pred HHHHHHHhccCCCC-CeeEEEeCcEeecCCC-cccccccccEEEEEEeCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcc
Q 007706 458 GILKTIGHNKDHPK-PIKIYEVGDVVLLDEK-KDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVIGTPFVPVGDDTG 535 (592)
Q Consensus 458 gLL~~~~~N~~~~~-~~~lFEiG~V~~~~~~-~~~~~~~~~~l~~~~~g~~~~f~~ikg~le~ll~~lgi~~~~~~~~~~ 535 (592)
|||.++++|++++. |+++||+|+||.++.. +.++..+.++++++++|..++|+++||+|+.+|+.+|+..
T Consensus 209 GLL~~lr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vdF~DLKGvLE~LL~~LGi~~-------- 280 (665)
T 2odr_A 209 GWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQFGFTN-------- 280 (665)
T ss_dssp HHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTTTCCC--------
T ss_pred hHHHHHHHHHhcCCCCeEEEEEeeEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHcCCCe--------
Confidence 99999999988764 6999999999986543 3345678999999999999999999999999999999742
Q ss_pred EEEEecC--CCCccCCceEEEEEC-----C-EEEEEEEEeCHHHHHhCCCCCCEEEEEEecccc
Q 007706 536 YYIQRSD--EPEFLPGRQASITHK-----G-KHVGTFGIVHPEVLNNFDISDPCSFMEIDIENF 591 (592)
Q Consensus 536 ~~~~~~~--~~~f~pgr~A~I~~~-----g-~~iG~~GelhP~vl~~~~l~~pv~~~El~l~~l 591 (592)
++++++. +++|||||+|+|.++ | +.||++|+|||+|+++|||+.|+++|||+|+.|
T Consensus 281 vrfrpse~~~p~yhPGreAEI~V~~~g~~GW~EIG~~GeVHPeVLk~~GId~~V~AFELgLErL 344 (665)
T 2odr_A 281 FKFIPDEKKSKYYTPETQTEVYAYHPKLKEWLEVATFGVYSPVALSKYGIDVPVMNLGLGVERL 344 (665)
T ss_dssp EEEEECTTCCTTBCTTCCEEEEEEETTTTEEEEEEEEEEBCHHHHHHTTCCSCEEEEEEEHHHH
T ss_pred EEEEECCCCCCCcCCceEEEEEEecCCCCCCEEEEEEeEECHHHHHHcCCCCCEEEEEEeHHHH
Confidence 7888763 788999999999985 4 799999999999999999999999999999865
No 14
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=99.97 E-value=7.3e-31 Score=287.04 Aligned_cols=203 Identities=14% Similarity=0.254 Sum_probs=168.9
Q ss_pred CCCCCCCCC---C-CCChHHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCC-CCCC-ce-eeCCCc--------
Q 007706 381 NIPKRKPAS---V-KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQT-DEST-AV-VGNPRT-------- 445 (592)
Q Consensus 381 ni~~~~p~~---~-~~~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~-~~~~-~v-i~NP~s-------- 445 (592)
+|+.++|.. . +.+|.+++.+++|+.+.++||+|+.++.+++..+++..++.+. +-.+ .+ |.||..
T Consensus 49 ~id~~~P~~~~~~G~~HPl~~~~~~IReif~~mGF~Ev~~p~Vese~~n~pq~gHPAR~~~D~tFYL~~P~~~~vg~~~~ 128 (701)
T 2odr_C 49 KINESYPRIKPVFGKTHPVNDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDE 128 (701)
T ss_dssp CTTTSSTTCCCCCCBCCHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHGGGHHHHHHTCEEEEECCC--------
T ss_pred ccCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHCCCEEeeCCEEeeehhhCCCcCCCccccCCcEEEECCCCCCccccchh
Confidence 345555543 2 7899999999999999999999999999999988765542110 0012 67 898751
Q ss_pred -----------------------------------------------------------C---------CcccccccchH
Q 007706 446 -----------------------------------------------------------S---------DFEVVRTTLMP 457 (592)
Q Consensus 446 -----------------------------------------------------------~---------e~~~lR~SLlp 457 (592)
. ++++|||||+|
T Consensus 129 ~~~~i~~~g~~is~~~~~l~~~~h~yk~~~~~~~dlv~~v~~~h~~~~s~g~~~~~~~~~ef~~l~~~a~~sVLRTSLlP 208 (701)
T 2odr_C 129 KISQIEKLGIKVSEHKESLQKILHGYKKGTLDGDDLVLEISNALEISSEMGLKILEDVFPEFKDLTAVSSKLTLRSHMTS 208 (701)
T ss_dssp -------------------------------------------------------------CCCCCCEEEEEEECCCTHH
T ss_pred hhhhhhhcccccchhhhhhhhhhhhhccCCCChHHHHHHHHHHhccccccceeeccccChhhhccCcccccCcccccchh
Confidence 1 37899999999
Q ss_pred HHHHHHHhccCCCC-CeeEEEeCcEeecCCC-cccccccccEEEEEEeCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcc
Q 007706 458 GILKTIGHNKDHPK-PIKIYEVGDVVLLDEK-KDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVIGTPFVPVGDDTG 535 (592)
Q Consensus 458 gLL~~~~~N~~~~~-~~~lFEiG~V~~~~~~-~~~~~~~~~~l~~~~~g~~~~f~~ikg~le~ll~~lgi~~~~~~~~~~ 535 (592)
|||.++++|++++. |+++||+|+||.++.. +.++..+.++++++++|..++|+++||+|+.+|+.+|+..
T Consensus 209 GLL~~vr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~EfhqLeGlv~G~~vDF~DLKGvLE~LL~~LGi~~-------- 280 (701)
T 2odr_C 209 GWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQFGFTN-------- 280 (701)
T ss_dssp HHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTTTCCC--------
T ss_pred hHHHHHHHHHhCCCCCeEEEEEeeEEccCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHcCCCe--------
Confidence 99999999988764 6999999999986543 3345678999999999999999999999999999999742
Q ss_pred EEEEecC--CCCccCCceEEEEEC-----C-EEEEEEEEeCHHHHHhCCCCCCEEEEEEecccc
Q 007706 536 YYIQRSD--EPEFLPGRQASITHK-----G-KHVGTFGIVHPEVLNNFDISDPCSFMEIDIENF 591 (592)
Q Consensus 536 ~~~~~~~--~~~f~pgr~A~I~~~-----g-~~iG~~GelhP~vl~~~~l~~pv~~~El~l~~l 591 (592)
++++++. +++|||||+|+|.++ | +.||++|+|||+|+++|||+.|+++|||+|+.|
T Consensus 281 vrfrpse~~~p~yHPGreAEI~V~~~g~~GW~EIG~~GeVHPeVLk~~GId~~V~AFELgLErL 344 (701)
T 2odr_C 281 FKFIPDEKKSKYYTPETQTEVYAYHPKLKEWLEVATFGVYSPVALSKYGIDVPVMNLGLGVERL 344 (701)
T ss_dssp EEEEECTTCCTTBCTTCCEEEEEEETTTTEEEEEEEEEEBCHHHHHHTTCCSCEEEEEEEHHHH
T ss_pred EEEEECCCCCCCcCCceEEEEEEecCCCCCCEEEEEEeEECHHHHHHcCCCCCEEEEEEeHHHH
Confidence 7888763 788999999999985 4 799999999999999999999999999999865
No 15
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A*
Probab=99.96 E-value=2.5e-29 Score=262.94 Aligned_cols=201 Identities=15% Similarity=0.168 Sum_probs=169.0
Q ss_pred CCCCCCCCCCC----CCChHHHHHHHHHHHHHHCCceEEeeccccChH-HHHHHcCCCCCC-----CCce-eeCCCc---
Q 007706 380 NNIPKRKPASV----KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSK-EISTMLNRQTDE-----STAV-VGNPRT--- 445 (592)
Q Consensus 380 dni~~~~p~~~----~~~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~-~~~~~~~~~~~~-----~~~v-i~NP~s--- 445 (592)
++|+.++|... ..+|.+++.+.+|+.|+++||+|+. ++++..+ .+|+.++.+.+. .+.+ |.||+|
T Consensus 84 ~~i~~tlP~~~~~~g~~hp~~~~~~~Ir~~f~~~Gf~Ev~-~p~v~~~~~nfd~L~~p~~hpar~~~dt~~l~nP~s~~~ 162 (350)
T 1b7y_A 84 ERVDVSLPGASLFSGGLHPITLMERELVEIFRALGYQAVE-GPEVESEFFNFDALNIPEHHPARDMWDTFWLTGEGFRLE 162 (350)
T ss_dssp --CCTTSCCCCCCCCBCCHHHHHHHHHHHHHHTTTCEECC-CCSEEEHHHHTTTTTCCSSSTTTTSSCCCBEECSSCCCB
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEE-CcchhcchhHHHhhCCCCCCccccccccEEEcCcccccc
Confidence 47787777432 6789999999999999999999999 7777654 466676544321 3468 999999
Q ss_pred -------CCcccccccchHHHHHHHHhccCCCCCeeEEEeCcEeecCCCcccccccccEEEEEEeCCCCCHHHHHHHHHH
Q 007706 446 -------SDFEVVRTTLMPGILKTIGHNKDHPKPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDR 518 (592)
Q Consensus 446 -------~e~~~lR~SLlpgLL~~~~~N~~~~~~~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~g~~~~f~~ikg~le~ 518 (592)
+++++||||++|+++++++++ ..|+|+||+|+||+.+..+.++..+.++++++++|...+|+++||.|+.
T Consensus 163 ~~~~~~~~~~~vLRt~tsp~llr~l~~~---~~piriFEiGrVFR~d~~d~tH~pEF~qlegl~~g~~v~f~dLKg~le~ 239 (350)
T 1b7y_A 163 GPLGEEVEGRLLLRTHTSPMQVRYMVAH---TPPFRIVVPGRVFRFEQTDATHEAVFHQLEGLVVGEGIAMAHLKGAIYE 239 (350)
T ss_dssp CTTSCBCCSCEEECSSSTHHHHHHHHHC---CSSEEEEEEEEEECCCCCCSSCCSEEEEEEEEEEETTCCHHHHHHHHHH
T ss_pred ccccccccccceeeccchHHHHHHHHhc---CCCeeEEEeeeEEECCCCCCCCCChhHEEEEEEECCCCCHHHHHHHHHH
Confidence 699999999999999999983 4579999999999876533456678899999999999999999999999
Q ss_pred HHHHh-CCCCCCCCCCccEEEEecCCCCccCCceEEEEE--CC--EEEEEEEEeCHHHHHhC-------CCCC-----CE
Q 007706 519 IMEVI-GTPFVPVGDDTGYYIQRSDEPEFLPGRQASITH--KG--KHVGTFGIVHPEVLNNF-------DISD-----PC 581 (592)
Q Consensus 519 ll~~l-gi~~~~~~~~~~~~~~~~~~~~f~pgr~A~I~~--~g--~~iG~~GelhP~vl~~~-------~l~~-----pv 581 (592)
+++.+ |.+. .+.++++.+|.+|||++++|++ +| ..||.+|+|||+|++++ ||+. ++
T Consensus 240 ll~~lfG~~~-------~~r~rps~fPft~Ps~e~~i~~~~~g~w~eIg~~G~VhP~Vl~~~~~~~~~~gid~~~~~~~~ 312 (350)
T 1b7y_A 240 LAQALFGPDS-------KVRFQPVYFPFVEPGAQFAVWWPEGGKWLELGGAGMVHPKVFQAVDAYRERLGLPPAYRGVTG 312 (350)
T ss_dssp HHHHHSCSSC-------CEEEEECCBTTEEEEEEEEEEETTTTEEEEEEEEEEECHHHHHHHHHHHHHTTCCCCCTTCEE
T ss_pred HHHhhcCCCc-------eEEEecCCCCCCCCccEEEEEEEeCCCeEEEEEEEEEeHHHHHhhccccccCCCCCccccceE
Confidence 99988 8642 1788888889999999999998 88 78999999999999999 9984 89
Q ss_pred EEEEEecccc
Q 007706 582 SFMEIDIENF 591 (592)
Q Consensus 582 ~~~El~l~~l 591 (592)
++|||+|+.|
T Consensus 313 ~afglglerl 322 (350)
T 1b7y_A 313 FAFGLGVERL 322 (350)
T ss_dssp EEEEEEHHHH
T ss_pred EEEEEeHHHH
Confidence 9999999864
No 16
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A*
Probab=99.96 E-value=1.6e-29 Score=260.12 Aligned_cols=181 Identities=15% Similarity=0.219 Sum_probs=151.5
Q ss_pred CCChHHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCceeeCCCcC------CcccccccchHHHHHHHH
Q 007706 391 KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAVVGNPRTS------DFEVVRTTLMPGILKTIG 464 (592)
Q Consensus 391 ~~~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~vi~NP~s~------e~~~lR~SLlpgLL~~~~ 464 (592)
..++.+++.+.+|+.|.++||+|+.||+|++.+ .++.++... .||+++ +..+||||++|+|+++++
T Consensus 75 ~~~~~~~i~~~ir~~l~~~Gf~EV~Tp~l~~~~-~~~~~~~~~-------~~p~~~~~~~~~~~~~LR~slsp~L~~~l~ 146 (290)
T 3qtc_A 75 RENYLGKLEREITRFFVDRGFLEIKSPILIPLE-YIERMGIDN-------DTELSKQIFRVDKNFCLRPMLTPNLYNYLR 146 (290)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCEEECCCSEEETH-HHHHTTCCT-------TSSGGGGCCEETTTEEECSCSHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHCCCEEEECCceeeHH-HHHhcCCCc-------CCchhhhheeeCCCeeEcccChHHHHHHHH
Confidence 667889999999999999999999999999986 455554322 244433 789999999999999999
Q ss_pred hccCCC-CCeeEEEeCcEeecCCCcccccccccEEEEEEeCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEecCC
Q 007706 465 HNKDHP-KPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVIGTPFVPVGDDTGYYIQRSDE 543 (592)
Q Consensus 465 ~N~~~~-~~~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~g~~~~f~~ikg~le~ll~~lgi~~~~~~~~~~~~~~~~~~ 543 (592)
+|.++. .|+|+||+|+||..+.......++.+++++.++|...+|+++||+++.+|+.+|++ |.+. ++
T Consensus 147 ~n~~~~~~p~rlfeiG~vFR~E~~~~~~~~Ef~ql~~~~~g~~~~f~elkg~le~ll~~lGl~---------~~~~--~~ 215 (290)
T 3qtc_A 147 KLDRALPDPIKIFEIGPCYRKESDGKEHLEEFTMLVFWQMGSGCTRENLESIITDFLNHLGID---------FKIV--GD 215 (290)
T ss_dssp HHTTTSCSSEEEEEEEEEECCCSCSSSCCSEEEEEEEEEESTTCCHHHHHHHHHHHHHHHTCC---------CEEE--C-
T ss_pred HhhccCCCCeEEEEEcCEEecCCCCCcCcchheEEEEEEEcCChHHHHHHHHHHHHHHHcCCC---------cEEe--CC
Confidence 998764 57999999999987644334567888999999999999999999999999999996 5665 56
Q ss_pred CCccCCceEEEEECCEEEEEEEEeCHHHH-HhCCCCCCEEEEEEecccc
Q 007706 544 PEFLPGRQASITHKGKHVGTFGIVHPEVL-NNFDISDPCSFMEIDIENF 591 (592)
Q Consensus 544 ~~f~pgr~A~I~~~g~~iG~~GelhP~vl-~~~~l~~pv~~~El~l~~l 591 (592)
+.|||||||+|+++|+.||+ |+|||+|+ ++|||+.|||+|||+|+.|
T Consensus 216 ~~~hpgr~a~i~~~~~~iG~-G~lhP~vl~~~~~i~~~v~~~el~le~l 263 (290)
T 3qtc_A 216 SCMVFGDTLDVMHGDLELSS-ALVGPIPLDREWGIDKPWIGAGFGLERL 263 (290)
T ss_dssp -----CEEEEEEETTEEEEE-EEESCCGGGGGGTCCSCEEEEEEEHHHH
T ss_pred CccccCCcccEeeCCEEEEE-EEecHHHHHHhCCCCCceEEEEECHHHH
Confidence 88999999999999999999 99999999 8999999999999999865
No 17
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=99.96 E-value=2.6e-29 Score=259.88 Aligned_cols=195 Identities=18% Similarity=0.176 Sum_probs=166.6
Q ss_pred CCCCCCCCCCCC----CCChHHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCC-----CCce-eeCCCcCCc
Q 007706 379 YNNIPKRKPASV----KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDE-----STAV-VGNPRTSDF 448 (592)
Q Consensus 379 ydni~~~~p~~~----~~~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~-----~~~v-i~NP~s~e~ 448 (592)
=++|+.++|... +.+|.+++.+++|+.|+++||+|+.++.+.+...+|+.|+.+.+. .+.+ | | ++
T Consensus 89 ~e~id~TLP~~~~~~G~~hp~~~~~~~Ir~if~~~Gf~ev~~~~ve~~~~nFd~Ln~p~dhpaR~~~dt~~i-~----e~ 163 (327)
T 3pco_A 89 AETIDVSLPGRRIENGGLHPVTRTIDRIESFFGELGFTVATGPEIEDDYHNFDALNIPGHHPARADHDTFWF-D----TT 163 (327)
T ss_dssp TTCCCTTSCCCCCCCCCCCHHHHHHHHHHHHHHTTTCBCCCCCSEECTCCCCCTTTCCSSSHHHHHTTCCBS-S----SS
T ss_pred hCCCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCeEEECCCccCCHHHHHhhCCCCCChhhcccccEEe-C----CC
Confidence 478999998653 789999999999999999999999999998888888888876542 1133 4 2 78
Q ss_pred ccccccchHHHHHHHHhccCCCCCeeEEEeCcEeecCCCcccccccccEEEEEEeCCCCCHHHHHHHHHHHHHHh-C--C
Q 007706 449 EVVRTTLMPGILKTIGHNKDHPKPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVI-G--T 525 (592)
Q Consensus 449 ~~lR~SLlpgLL~~~~~N~~~~~~~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~g~~~~f~~ikg~le~ll~~l-g--i 525 (592)
++|||+++|++++++++| ..|+++||+|+||+.+. +.++....+++.+++.++.++|+++||+|+.+++.+ | +
T Consensus 164 ~vLRThtsp~~lr~l~~~---~~pirifeiGrVyR~d~-d~th~p~fhqlegl~v~~~v~f~dLKg~Le~~l~~lfg~~~ 239 (327)
T 3pco_A 164 RLLRTQTSGVQIRTMKAQ---QPPIRIIAPGRVYRNDY-DQTHTPMFHQMEGLIVDTNISFTNLKGTLHDFLRNFFEEDL 239 (327)
T ss_dssp CEECSCTHHHHHHHHTTC---CSSCCBCCEECCBCSCC-BTTBCSBCCEEEEEEEETTCCHHHHHHHHHHHHHHHHCSCS
T ss_pred ceecccCCHHHHHHHHhC---CCCeeEEeeccEEecCC-CcccCCcccEEEEEEECCCCCHHHHHHHHHHHHHHHhCCCc
Confidence 999999999999999874 35799999999998863 334445567888889999999999999999999998 3 3
Q ss_pred CCCCCCCCccEEEEecCCCCccCCceEEEEE-CCE--EEEEEEEeCHHHHHhCCCCCC---EEEEEEecccc
Q 007706 526 PFVPVGDDTGYYIQRSDEPEFLPGRQASITH-KGK--HVGTFGIVHPEVLNNFDISDP---CSFMEIDIENF 591 (592)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~f~pgr~A~I~~-~g~--~iG~~GelhP~vl~~~~l~~p---v~~~El~l~~l 591 (592)
+ +.++++..|++|||++|+|++ +|+ .||.+|+|||+|++++||+.+ +|+|||+++.|
T Consensus 240 ~---------vr~rps~fPftePs~eadI~~~~G~w~EIgg~G~VHP~Vl~~~gid~~~~~g~AFglgleRl 302 (327)
T 3pco_A 240 Q---------IRFRPSYFPFTEPSAEVDVMGKNGKWLEVLGCGMVHPNVLRNVGIDPEVYSGFAFGMGMERL 302 (327)
T ss_dssp E---------EEEEEECCTTEEEEEEEEEECSSSCEEEEEEEEEECHHHHHTTTCCTTTCEEEEEEEEHHHH
T ss_pred e---------EEEecCcCCCCCCcEEEEEEEeCCCeEEEEEEEEECHHHHHHcCCCCccceEEEEEechHHH
Confidence 3 788999999999999999999 775 999999999999999999954 99999999864
No 18
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=99.96 E-value=2.1e-28 Score=265.11 Aligned_cols=208 Identities=15% Similarity=0.159 Sum_probs=175.4
Q ss_pred HHhCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHCCceEEeecccc-ChHHHHHHcCCCCCC-----CCce-eeCCCcC-
Q 007706 375 IAYGYNNIPKRKPASVKPLALNEFSDLMRLEIAMNGFTEVLTWILC-SSKEISTMLNRQTDE-----STAV-VGNPRTS- 446 (592)
Q Consensus 375 r~yGydni~~~~p~~~~~~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~-s~~~~~~~~~~~~~~-----~~~v-i~NP~s~- 446 (592)
|.|+|+...+..+ ....+|.+++.+.+|++|.++||+|+++.+++ +...+|+.|+.+.+. .+.+ |.||++.
T Consensus 208 ~~y~~~~~g~~~~-~G~lHPl~~v~~~Ir~if~~mGF~Ev~t~~~ves~~~NFDaLn~P~dHPaR~~~Dtfyi~~P~~~~ 286 (508)
T 3l4g_A 208 KPYNFLAHGVLPD-SGHLHPLLKVRSQFRQIFLEMGFTEMPTDNFIESSFWNFDALFQPQQHPARDQHDTFFLRDPAEAL 286 (508)
T ss_dssp CCCCSSSCCCCCC-CCBCCHHHHHHHHHHHHHHHTTCEECCCCCSEEEHHHHTGGGTCCSSSTTSSTTTSCBBSTTCBCS
T ss_pred eecccCCCCCCCC-CCCCCHHHHHHHHHHHHHHHCcCeEeccCCccccHHHHHHhcCCCCCCcccccCceEEEcCccccc
Confidence 6788887664332 12789999999999999999999999974444 445578888876532 2458 9999875
Q ss_pred ---------------------------------CcccccccchHHHHHHHHhccC-CC-CCeeEEEeCcEeecCCCcccc
Q 007706 447 ---------------------------------DFEVVRTTLMPGILKTIGHNKD-HP-KPIKIYEVGDVVLLDEKKDVG 491 (592)
Q Consensus 447 ---------------------------------e~~~lR~SLlpgLL~~~~~N~~-~~-~~~~lFEiG~V~~~~~~~~~~ 491 (592)
+.++|||+++|++++++++|.+ ++ .|+|+||+|+||+.+..+.++
T Consensus 287 ~~~e~~~~~v~~~He~g~~~s~g~~~~~~~~~~~~~vLRThtsp~~lr~l~~N~~~~~~~PiriFeiGrVFR~d~~DatH 366 (508)
T 3l4g_A 287 QLPMDYVQRVKRTHSQGGYGSQGYKYNWKLDEARKNLLRTHTTSASARALYRLAQKKPFTPVKYFSIDRVFRNETLDATH 366 (508)
T ss_dssp CCCHHHHHHHHHHHHTCBTTBCCCCSCCCHHHHTBEEECCCTHHHHHHHHHHHHTSSSCCCEEEEEEEEEECCSCCCSSS
T ss_pred cccHHHHHhhhhhhhccccCCccccccccccccccccccCCChHHHHHHHHHhhhhcCCCCceEEEEccEEecCCCCCCc
Confidence 5899999999999999999987 44 579999999999987655566
Q ss_pred cccccEEEEEEeCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEecCCCCccCCceEEEEECC----EEEEEEEEe
Q 007706 492 ASCRRRLAALYCGANSGFELIHCLVDRIMEVIGTPFVPVGDDTGYYIQRSDEPEFLPGRQASITHKG----KHVGTFGIV 567 (592)
Q Consensus 492 ~~~~~~l~~~~~g~~~~f~~ikg~le~ll~~lgi~~~~~~~~~~~~~~~~~~~~f~pgr~A~I~~~g----~~iG~~Gel 567 (592)
..+.+++.++++|...+|+++||+|+.+++.+|+.. +.++++..|++||++.+.++.+| ..||.+|+|
T Consensus 367 lpeFhQlegl~~~~~v~f~dLKg~Le~~l~~lG~~~--------~rfrps~fPftePS~ev~i~~~G~~~W~EIGg~G~v 438 (508)
T 3l4g_A 367 LAEFHQIEGVVADHGLTLGHLMGVLREFFTKLGITQ--------LRFKPAYNPYTEPSMEVFSYHQGLKKWVEVGNSGVF 438 (508)
T ss_dssp CSEEEEEEEEEEEESCCHHHHHHHHHHHHHTTTCCC--------CEEEECCCTTCSSEEEEEECCSTTSSCEEEEEEECC
T ss_pred CCeEEEEEEEEECCCCCHHHHHHHHHHHHHHcCCcc--------eEeeccCCCCCCCeEEEEEEECCccceEEEEeeeeE
Confidence 677889999999999999999999999999999742 78899999999998888887777 799999999
Q ss_pred CHHHHHhCCCC--CCEEEEEEecccc
Q 007706 568 HPEVLNNFDIS--DPCSFMEIDIENF 591 (592)
Q Consensus 568 hP~vl~~~~l~--~pv~~~El~l~~l 591 (592)
||+|++++||+ +|+++|||+|+.|
T Consensus 439 hP~VL~~~Gipe~~~v~AfgLgLeRL 464 (508)
T 3l4g_A 439 RPEMLLPMGLPENVSVIAWGLSLERP 464 (508)
T ss_dssp CHHHHGGGTCCTTEEEEEEEEESHHH
T ss_pred cHHHHHHCCCCCCceEEEEEecHHHH
Confidence 99999999996 5999999999864
No 19
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A
Probab=99.93 E-value=4.2e-26 Score=244.16 Aligned_cols=195 Identities=13% Similarity=0.094 Sum_probs=158.4
Q ss_pred CCCCCCC---CCCCC----CCChHHHHHHHHHHHHHHC--------CceEEee-ccccChHHHHHHcCCCCCC-----CC
Q 007706 379 YNNIPKR---KPASV----KPLALNEFSDLMRLEIAMN--------GFTEVLT-WILCSSKEISTMLNRQTDE-----ST 437 (592)
Q Consensus 379 ydni~~~---~p~~~----~~~~~~~~~~~lr~~l~~~--------Gf~Ev~t-~sl~s~~~~~~~~~~~~~~-----~~ 437 (592)
|+||+++ .|... +.+|.+++.+.+|+.|+++ ||+|+.+ +.++|..++|+.|+.+.+. .+
T Consensus 27 ~~ni~~~~~~~~~~~~~~g~~hPl~~~~~~i~~~f~~~~~~~~g~~Gf~e~~~~~~v~s~~~NFd~L~~p~dHpaR~~~D 106 (415)
T 3cmq_A 27 HSNLTRKVLTRVGRNLHNQQHHPLWLIKERVKEHFYKQYVGRFGTPLFSVYDNLSPVVTTWQNFDSLLIPADHPSRKKGD 106 (415)
T ss_dssp SCCCCHHHHTTTTCCGGGSTTCHHHHHHHHHHHHHHHHHHHCSSSCCCEEECCCCSEEEHHHHTGGGTCCTTCGGGCGGG
T ss_pred cccCChhhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhccccCCCCcEEEcCCCccccHHHHHHHhCCCCCCCcccccc
Confidence 7899876 55322 7899999999999999999 9999999 9999999999999876542 12
Q ss_pred ce-eeCCCcCCcccccccchHHHHHHHHhccCCCCCeeEEEeCcEeecCCCcccccc---------------------cc
Q 007706 438 AV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIKIYEVGDVVLLDEKKDVGAS---------------------CR 495 (592)
Q Consensus 438 ~v-i~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~~~lFEiG~V~~~~~~~~~~~~---------------------~~ 495 (592)
.. | | +..+|||++.|+++++++.|. | ++||+|+||++|..+.+... +.
T Consensus 107 tfyi-~----~~~vLRThts~~~~~~l~~~~----~-k~~~~G~VyR~D~~da~h~n~fhQ~egv~lfe~g~~f~~~~~~ 176 (415)
T 3cmq_A 107 NYYL-N----RTHMLRAHTSAHQWDLLHAGL----D-AFLVVGDVYRRDQIDSQHYPIFHQLEAVRLFSKHELFAGIKDG 176 (415)
T ss_dssp SCBS-S----SSEEECSSGGGGHHHHHHTTC----S-EEEEEEEEECCCCCBTTBCSEEEEEEEEEEEEHHHHTTTSTTG
T ss_pred eEEe-c----CCeEEcCCCcHHHHHHHHHCC----C-CEEEeeeEEeccchhhhhhHHhcCCCcEEEEeccceecccccc
Confidence 23 4 2 468999999999999999862 4 99999999998753222111 13
Q ss_pred cEEEEEEeCCC--------------CCHHHHHHHHHHHHHHh-CCCCCCCCCCccEEEEecCCCCccCCceEEEEECCE-
Q 007706 496 RRLAALYCGAN--------------SGFELIHCLVDRIMEVI-GTPFVPVGDDTGYYIQRSDEPEFLPGRQASITHKGK- 559 (592)
Q Consensus 496 ~~l~~~~~g~~--------------~~f~~ikg~le~ll~~l-gi~~~~~~~~~~~~~~~~~~~~f~pgr~A~I~~~g~- 559 (592)
++++++++|.. ++|+++||.|+++|+.+ |++.. ++++++.+|+|||||+|+|+++|+
T Consensus 177 ~~la~~~~g~~~~~~~~~~~~~~vd~~f~dlKg~le~ll~~lfg~~~~-------~~~~~~~~p~~hPgr~a~I~~~g~w 249 (415)
T 3cmq_A 177 ESLQLFEQSSRSAHKQETHTMEAVKLVEFDLKQTLTRLMAHLFGDELE-------IRWVDCYFPFTHPSFEMEINFHGEW 249 (415)
T ss_dssp GGCCSBCCCCCCSSCCTTBCHHHHHHHHHHHHHHHHHHHHHHHCTTCC-------EEEEEEEETTEEEEEEEEEEETTEE
T ss_pred ceEEEEEecCcccccccccccccccccHHHHHHHHHHHHHHHcCCCce-------EEEecCCCCCCCCceEEEEEECCee
Confidence 34555555542 24999999999999987 98521 778887889999999999999999
Q ss_pred --EEEEEEEeCHHHHHhCCCCCCE-EEEEEecccc
Q 007706 560 --HVGTFGIVHPEVLNNFDISDPC-SFMEIDIENF 591 (592)
Q Consensus 560 --~iG~~GelhP~vl~~~~l~~pv-~~~El~l~~l 591 (592)
.+|+ |+|||+|+++|||+.++ ++|||+|+.|
T Consensus 250 lE~lG~-G~lhP~Vl~~~gl~~~vg~afel~le~l 283 (415)
T 3cmq_A 250 LEVLGC-GVMEQQLVNSAGAQDRIGWAFGLGLERL 283 (415)
T ss_dssp EEEEEE-EEECHHHHHHTTCTTEEEEEEEEEHHHH
T ss_pred EEEEEE-EEeCHHHHHHcCCCCcceEEEEEcHHHH
Confidence 9999 99999999999999899 9999999865
No 20
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A
Probab=99.92 E-value=3.7e-25 Score=226.66 Aligned_cols=187 Identities=15% Similarity=0.204 Sum_probs=158.3
Q ss_pred CCChHHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCce-eeCCCcCCcccccccchHHHHHHHHhccCC
Q 007706 391 KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDH 469 (592)
Q Consensus 391 ~~~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v-i~NP~s~e~~~lR~SLlpgLL~~~~~N~~~ 469 (592)
+.++.+++.+.+|+.|.++||+|+.|++|.+.+. +...+...+ .+.+ +.||+++++ +|||++.|+++.++++|.++
T Consensus 69 ~~h~~~~l~~~ir~~~~~~Gf~EV~tP~Le~~~l-~~~~g~~~~-~~m~~~~npl~e~~-~LRp~l~p~l~~~~r~~~~~ 145 (288)
T 3dsq_A 69 HRPALLELEEKLAKALHQQGFVQVVTPTIITKSA-LAKMTIGED-HPLFSQVFWLDGKK-CLRPMLAPNLYTLWRELERL 145 (288)
T ss_dssp SSCHHHHHHHHHHHHHHTTTCEECCCCSEEEHHH-HHTTSSCC---CCTTTSCEEETTE-EECSCSHHHHHHHHHHHTTT
T ss_pred CcCHHHHHHHHHHHHHHHCCCEEEECCeeecHHH-HhhcCCCcc-cccEEeecccccch-hhhhcChHHHHHHHHHHHhC
Confidence 6788999999999999999999999999999875 343332221 2466 899999886 99999999999999999764
Q ss_pred -CCCeeEEEeCcEeecCCCcccccccccEEEEEEeCC--CCCHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEecCCCCc
Q 007706 470 -PKPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGA--NSGFELIHCLVDRIMEVIGTPFVPVGDDTGYYIQRSDEPEF 546 (592)
Q Consensus 470 -~~~~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~g~--~~~f~~ikg~le~ll~~lgi~~~~~~~~~~~~~~~~~~~~f 546 (592)
..|+|+||+|+||+.+.......++..++++.+.|. ..+|+++||+++.+++.||++. |.+.+... .
T Consensus 146 ~~~PlrlfeiG~vFR~E~~~~~r~~EF~qle~~i~g~~~~~~f~elkg~le~ll~~LGl~~--------~~~~~~s~--e 215 (288)
T 3dsq_A 146 WDKPIRIFEIGTCYRKESQGAQHLNEFTMLNLTELGTPLEERHQRLEDMARWVLEAAGIRE--------FELVTESS--V 215 (288)
T ss_dssp SCSCEEEEEEEEEECSCCSSSCCCSEEEEEEEEEETCCGGGHHHHHHHHHHHHHHHHTCCC--------CEEEECCC--C
T ss_pred CCCCEEEEEEeeEEecCCCCCCcCccEEEEEEEEEcCCchhhHHHHHHHHHHHHHHcCCCC--------cEEecCCc--c
Confidence 458999999999987655444557888999999987 6789999999999999999952 67766543 4
Q ss_pred cCCceEEEEECCEEEEEEEEeCHHHH-HhCCCCCCEEEEEEecccc
Q 007706 547 LPGRQASITHKGKHVGTFGIVHPEVL-NNFDISDPCSFMEIDIENF 591 (592)
Q Consensus 547 ~pgr~A~I~~~g~~iG~~GelhP~vl-~~~~l~~pv~~~El~l~~l 591 (592)
++|+||++.++|..||.+| +||.++ ++|||+.|+++|||+|+.|
T Consensus 216 ~~~~~~~l~~~~~eig~~G-v~p~vl~~~~gi~~~~~gfglglerl 260 (288)
T 3dsq_A 216 VYGDTVDVMKGDLELASGA-MGPHFLDEKWEIFDPWVGLGFGLERL 260 (288)
T ss_dssp SSCCCEEEEETTEEEEEEE-EESCTTTTTTTCCSCEEEEEEEHHHH
T ss_pred eEEEEEEEEeCCEEEEEEE-ecHHHHHHhcCCCCCeEEEEECHHHH
Confidence 7899999999999999999 999999 9999999999999999865
No 21
>3hj7_A TRNA(Ile)-lysidine synthase; helix-turn-helix, pseudo-knot, ATP-binding, ligase, nucleoti binding, tRNA processing; 2.20A {Geobacillus kaustophilus}
Probab=97.68 E-value=6.7e-05 Score=68.13 Aligned_cols=83 Identities=13% Similarity=0.183 Sum_probs=63.3
Q ss_pred ee-eccccCCCeEEEecCCCceEEEeCCCcccCChhHHHhhhccccccccccccccCCCceeEEEeCCCCeeecCCcccC
Q 007706 163 TH-DLDTLQGPFTYEALPPSHINFVPLKQTRDFTADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNRTVLSLPPIING 241 (592)
Q Consensus 163 n~-Dld~i~~p~~y~~~~~~~i~f~~L~~~~~~~~~el~~l~~~~~~l~~y~~i~~~~~~~~vI~D~~~~vlslagIigg 241 (592)
.+ |+|++.+|+.++...+++ +|+|++.....+.++++. +.+.... ..+.+|+|+|+++++++++|+-.+
T Consensus 43 ~~~D~dki~~pL~vR~r~~GD-r~~p~g~~g~KkLKklf~----d~kIP~~-----~R~~~Pll~~~~~~IiwV~G~~~s 112 (142)
T 3hj7_A 43 FVVDPASVSLPLRVRTRRRGD-RMVLKGTGGTKKLKEIFI----EAKIPRM-----ERDRWPIVEDADGRILWVPGLKKS 112 (142)
T ss_dssp EEECGGGSCSSEEEECCCTTC-EEEBSTTCCEEEHHHHHH----HTTCCHH-----HHTTCCEEECTTCCEEEETTTEEB
T ss_pred EEECHHHCCCCEEEEecCCCC-EEEECCCCCCccHHHHHH----HcCCCHH-----HhCCceEEEECCCeEEEEeCeeec
Confidence 47 999999999999888776 899997644445666654 3333321 124579999965579999999999
Q ss_pred CcceeecCCeEEEE
Q 007706 242 AHSAITLKTKNVFI 255 (592)
Q Consensus 242 ~~s~It~~T~nI~i 255 (592)
+..+++++|++|+.
T Consensus 113 ~~~kv~~~T~~vl~ 126 (142)
T 3hj7_A 113 AFEAQNRGQARYIL 126 (142)
T ss_dssp TTSCCCSCCSCEEE
T ss_pred cceeeCCCCCEEEE
Confidence 99999999998763
No 22
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=97.56 E-value=0.0005 Score=74.62 Aligned_cols=148 Identities=14% Similarity=0.059 Sum_probs=100.0
Q ss_pred hCCCCCCCCCCCCC-CCCh-----HHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCC-ce-eeCCC----
Q 007706 377 YGYNNIPKRKPASV-KPLA-----LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDEST-AV-VGNPR---- 444 (592)
Q Consensus 377 yGydni~~~~p~~~-~~~~-----~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~-~v-i~NP~---- 444 (592)
....+|..+.|... -..| .+.+.+.+|+.+...||+|+.|..|-..+..... + .. .+. .. +.+..
T Consensus 5 ~~~~~~~~~~p~G~~D~lP~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~~E~~~~~~~~-G-~~-~ke~m~~~~d~~~~g~ 81 (465)
T 3net_A 5 AKNDKINFSTPSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAK-G-NQ-GDNIIYGLEPILPPNR 81 (465)
T ss_dssp ----CCCCSCCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHGG-G-CC---CBEEEEEEEC----
T ss_pred cCCccccccCCCCccccCHHHHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHHhcc-C-CC-CccceEEEeccccccc
Confidence 45667777777655 3333 3457889999999999999999999887643332 3 22 244 55 76653
Q ss_pred ----------cCCcccccccchHHHHHHHHhccC-CCCCeeEEEeCcEeecCCCcccccccccEEEEEEeCCCCCHH---
Q 007706 445 ----------TSDFEVVRTTLMPGILKTIGHNKD-HPKPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFE--- 510 (592)
Q Consensus 445 ----------s~e~~~lR~SLlpgLL~~~~~N~~-~~~~~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~g~~~~f~--- 510 (592)
+.+.-+||+-+.|++.+.++.|.+ ...|+|+|.+|.||+.+.......++..++.+=+.|...-..
T Consensus 82 ~~~~~~~~~~~g~~l~LRpd~T~~~aR~~~~~~~~~~~p~r~~y~g~vfR~e~~~~gr~Ref~Q~g~ei~G~~~~~a~~D 161 (465)
T 3net_A 82 QAEKDKSGDTGSEARALKFDQTVPLAAYIARHLNDLTFPFARYQMDVVFRGERAKDGRFRQFRQCDIDVVGREKLSLLYD 161 (465)
T ss_dssp ------------CCEEECSCSHHHHHHHHHHHGGGSCSSEEEEECCEEECBC------CCEEEEEEEEEECSSCCCHHHH
T ss_pred ccccccccCCCCCEEEeCCCChHHHHHHHHhcccccCCCeEEEEeccEEecCCCCCCCcceeEEeeEEEECCCCccchhh
Confidence 245668999999999999999875 356899999999998654333345677777776666543323
Q ss_pred -HHHHHHHHHHHHhCCCC
Q 007706 511 -LIHCLVDRIMEVIGTPF 527 (592)
Q Consensus 511 -~ikg~le~ll~~lgi~~ 527 (592)
++-.++..+|+.+|++.
T Consensus 162 aEvi~l~~~~l~~lgl~~ 179 (465)
T 3net_A 162 AQMPAIITEIFEAVNIGD 179 (465)
T ss_dssp HHHHHHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHHHHcCCCc
Confidence 46678888899999863
No 23
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Probab=97.49 E-value=0.00089 Score=69.77 Aligned_cols=130 Identities=9% Similarity=0.110 Sum_probs=91.6
Q ss_pred hHHHHHHHHHHHHHHCCceEEeeccccChHHHHHH-cCC--CCCCCCce-eeCCCcCCcccccccchHHHHHHHHhccCC
Q 007706 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTM-LNR--QTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDH 469 (592)
Q Consensus 394 ~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~-~~~--~~~~~~~v-i~NP~s~e~~~lR~SLlpgLL~~~~~N~~~ 469 (592)
..+++++.+|+.+...||+|+.|..|...+. +.. +.. ....++.. +..+ +.+.-+||+-+.|++.+.++.| ..
T Consensus 38 ~~~~i~~~i~~~~~~~Gy~eI~tP~le~~el-~~~s~~g~~~~~~~~my~~~D~-~g~~l~LRpd~T~~~aR~~~~~-~~ 114 (344)
T 1z7m_A 38 SLRQIEGRLRKLFSLKNYQEVMPPSFEYTQL-YTALESNGKTFNQEKMFQFIKH-EGQSITLRYDFTLPLVRLYSQI-KD 114 (344)
T ss_dssp HHHHHHHHHHHHHHHTTCEECCCCSEEEHHH-HHHHHCSSSCCCTTSCCEEECT-TCCEEEECCCSHHHHHHHHHTC-CS
T ss_pred HHHHHHHHHHHHHHHcCCEEecCcccCcHHH-HhhccCCccccccccEEEEECC-CCCEEecCCCCcHHHHHHHHhc-CC
Confidence 4557889999999999999999999988764 432 111 11123455 6665 4556689999999999999998 55
Q ss_pred CCCeeEEEeCcEeecCCCcccccccccEEEEEEeCCCCCH--HHHHHHHHHHHHHhCCC
Q 007706 470 PKPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGF--ELIHCLVDRIMEVIGTP 526 (592)
Q Consensus 470 ~~~~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~g~~~~f--~~ikg~le~ll~~lgi~ 526 (592)
..|+|+|++|.||..+.......++..++.+=+.|...-. .++-.++..+++.+|++
T Consensus 115 ~~P~rl~y~g~vfR~e~p~~gR~REF~Q~g~ei~g~~~~~aDaEvi~l~~~~l~~lgl~ 173 (344)
T 1z7m_A 115 STSARYSYFGKIFRKEKRHKGRSTENYQIGIELFGESADKSELEILSLALQVIEQLGLN 173 (344)
T ss_dssp CCCEEEEEEEECCCCCC-------CCEEEEEEEESSCHHHHHHHHHHHHHHHHHHHTCS
T ss_pred CCCeEEEEECcEEccCCCCCCCcceeEEEEEEEEcCCCcHHHHHHHHHHHHHHHHCCCC
Confidence 6799999999999765332234567777777666653222 35667888899999986
No 24
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=97.20 E-value=0.0032 Score=66.90 Aligned_cols=129 Identities=12% Similarity=0.129 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCce-eeCCCcCCcccccccchHHHHHHHHhccCC-CCC
Q 007706 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDH-PKP 472 (592)
Q Consensus 395 ~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v-i~NP~s~e~~~lR~SLlpgLL~~~~~N~~~-~~~ 472 (592)
.+.+++.+|+.+...||+|+.|..|...+. +...+. ...++.. +..+ +.+.=+||+-+.|++.+.++.|.+. ..|
T Consensus 27 ~~~i~~~l~~~~~~~Gy~eI~tP~lE~~el-~~~~g~-~~~~~my~f~D~-~g~~l~LRpd~T~~~aR~~~~~~~~~~~P 103 (400)
T 3od1_A 27 KKNICDQMTEEINLWGYDMIETPTLEYYET-VGVVSA-ILDQQLFKLLDQ-QGNTLVLRPDMTAPIARLVASSLKDRAYP 103 (400)
T ss_dssp HHHHHHHHHHHHHHTTCEECBCCSEEETTT-HHHHSS-SCGGGSCEEECT-TSCEEEECSCSHHHHHHHHHHHCSSSCSC
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCccccHHH-HhhcCC-ccccceEEEECC-CCCEEEECCCCHHHHHHHHHhhcccCCCC
Confidence 456789999999999999999999977654 332221 1123445 6655 3445689999999999999988763 568
Q ss_pred eeEEEeCcEeecCCCcccccccccEEEEEEeCCCCCH--HHHHHHHHHHHHHhCCC
Q 007706 473 IKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGF--ELIHCLVDRIMEVIGTP 526 (592)
Q Consensus 473 ~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~g~~~~f--~~ikg~le~ll~~lgi~ 526 (592)
+|+|++|.||+.+.......++..++.+=+.|...-. .++-.++..+++.+|++
T Consensus 104 ~r~~y~g~vfR~e~~~~gR~Ref~Q~g~ei~G~~~~~aDaEvi~l~~~~l~~lgl~ 159 (400)
T 3od1_A 104 LRLAYQSNVYRAQQNEGGKPAEFEQLGVELIGDGTASADGEVIALMIAALKRAGLS 159 (400)
T ss_dssp EEEEEEEEEECCCC---CCCSEEEEEEEEEESCCSHHHHHHHHHHHHHHHHHTTCC
T ss_pred eEEEEEcCEEeCCCCCCCCCCccEEeEEEEECCCChHhHHHHHHHHHHHHHHCCCC
Confidence 9999999999865432234467777777666654323 34667888889999985
No 25
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=97.20 E-value=0.0026 Score=68.24 Aligned_cols=130 Identities=12% Similarity=0.063 Sum_probs=91.0
Q ss_pred hHHHHHHHHHHHHHHCCceEEeeccccChHHHHHH-cCCCCCCCCce-eeCCCcCCcccccccchHHHHHHHHhccCCCC
Q 007706 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTM-LNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPK 471 (592)
Q Consensus 394 ~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~-~~~~~~~~~~v-i~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~ 471 (592)
..+++++.+|+.+...||+|+.|..|...+. +.. .+. ...++.. +... +.+.=+||+.+.|++.+..+.|.....
T Consensus 22 ~~~~i~~~i~~~~~~~G~~ei~tP~le~~el-~~~~~G~-~~~~em~~~~D~-~g~~l~LrPd~t~~~aR~~~~~~~~~l 98 (434)
T 1wu7_A 22 VEKFIFKTAEEAAEAFGFRRIDFPSLEYLDL-YRIKSGE-ELLQQTYSFVDK-GGREVTLIPEATPSTVRMVTSRKDLQR 98 (434)
T ss_dssp HHHHHHHHHHHHHHHTTCEECBCCSEEETHH-HHTTSCT-TGGGGSCEEECT-TSCEEEECSCSHHHHHHHHTTCTTCCS
T ss_pred HHHHHHHHHHHHHHHcCCEEeeccccccHHH-hhhccCC-ccccceEEEECC-CCCEEEeCCCChHHHHHHHHhcCCCCC
Confidence 3457889999999999999999999988654 332 221 1123445 6655 445568999999999999998822346
Q ss_pred CeeEEEeCcEeecCCCcccccccccEEEEEEeCCCCCH--HHHHHHHHHHHHHhCCC
Q 007706 472 PIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGF--ELIHCLVDRIMEVIGTP 526 (592)
Q Consensus 472 ~~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~g~~~~f--~~ikg~le~ll~~lgi~ 526 (592)
|+|+|.+|.||+.+...-...++..+..+=+.|...-. .++-.++..+++.+|++
T Consensus 99 P~rl~~~g~vfR~erp~~gR~REF~Q~d~ei~g~~~~~ad~E~i~~~~~~l~~lgl~ 155 (434)
T 1wu7_A 99 PLRWYSFPKVWRYEEPQAGRYREHYQFNADIFGSDSPEADAEVIALASSILDRLGLQ 155 (434)
T ss_dssp SEEEEECCEEECCCCSCSSCCSEEEEEEEEEESCCSHHHHHHHHHHHHHHHHHTTTT
T ss_pred CeEEEEEcCeecCCCCCCCCccceEEeeEEEEcCCChHhhHHHHHHHHHHHHHcCCC
Confidence 89999999999755332223466666666555543221 34557778889999986
No 26
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=97.16 E-value=0.0026 Score=66.91 Aligned_cols=130 Identities=11% Similarity=0.044 Sum_probs=91.2
Q ss_pred hHHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCC-CCce-eeCCCcCCcccccccchHHHHHHHHhccC-CC
Q 007706 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDE-STAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKD-HP 470 (592)
Q Consensus 394 ~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~-~~~v-i~NP~s~e~~~lR~SLlpgLL~~~~~N~~-~~ 470 (592)
..+++++.+|+.+...||+|+.|..|...+. +...+. ... ++.. +..+ +.+.=+||+-+.|++.+.++.|.+ +.
T Consensus 39 ~~~~i~~~i~~~f~~~Gy~eI~tP~le~~el-~~~~g~-~~~~~~my~~~D~-~g~~l~LRpd~T~~~aR~~~~~~~~~~ 115 (373)
T 3rac_A 39 RRRAVETRLLSFVEDAGYEPVTSGLFEYVDT-LLRARS-PESSRDWIRLFDG-GGDAVALRPEMTPSIARMAAPRVAAGR 115 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCEECCCCSEEEHHH-HHTTSC-TTSCCCCCBCCCC-SSSCEEECSSSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHcCCeEEECCceeeHHH-HhhcCC-ccchhceEEEECC-CCCEEEECCcCHHHHHHHHHhccccCC
Confidence 3456889999999999999999999987664 332221 112 3445 6555 445568999999999999998865 45
Q ss_pred CCeeEEEeCcEeecCCC------cccccccccEEEEEEeCCC-CCH--HHHHHHHHHHHHHhCCC
Q 007706 471 KPIKIYEVGDVVLLDEK------KDVGASCRRRLAALYCGAN-SGF--ELIHCLVDRIMEVIGTP 526 (592)
Q Consensus 471 ~~~~lFEiG~V~~~~~~------~~~~~~~~~~l~~~~~g~~-~~f--~~ikg~le~ll~~lgi~ 526 (592)
.|+|+|++|.||+.+.. .....++..++.+=+.|.. .-. .++-.++..+++.+|++
T Consensus 116 ~P~r~~y~g~vfR~e~~g~~~~~~~gR~ReF~Q~g~ei~g~~d~~~aDaEvi~l~~~~l~~lgl~ 180 (373)
T 3rac_A 116 TPIRWCYCERVYRRTDDPASLSWASGKAAESTQVGIERIGEEASVDVDMDVLRLLHEASAAAGVR 180 (373)
T ss_dssp CCCEEEEEEEEEECC------------CEEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCeEEEEEcceEccCCCcccccccCCccceeEEeeeEEECCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 78999999999986543 2223466677777666654 223 24667788889999985
No 27
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=97.15 E-value=0.0052 Score=65.55 Aligned_cols=130 Identities=9% Similarity=0.074 Sum_probs=90.0
Q ss_pred hHHHHHHHHHHHHHHCCceEEeeccccChHHHHHHc-CCC--CCCCCce-eeCCCcCCcccccccchHHHHHHHHhcc-C
Q 007706 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTML-NRQ--TDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNK-D 468 (592)
Q Consensus 394 ~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~-~~~--~~~~~~v-i~NP~s~e~~~lR~SLlpgLL~~~~~N~-~ 468 (592)
..+++++.+|+.+...||+|+.|..|...+. +..- +.. ...++.. +.+. +.+.=+||+-+.|++.+..+.|. +
T Consensus 19 ~~~~i~~~i~~~~~~~G~~ei~tP~le~~el-~~~~~G~~~d~~~~em~~~~D~-~g~~l~Lrpd~t~~~ar~~~~~~~~ 96 (421)
T 1h4v_B 19 MHQRIVATARKVLEAAGALELVTPIFEETQV-FEKGVGAATDIVRKEMFTFQDR-GGRSLTLRPEGTAAMVRAYLEHGMK 96 (421)
T ss_pred HHHHHHHHHHHHHHHcCCEEecccccccHHH-hhhccCCcccccccceEEEECC-CCCEEeeCCcchHHHHHHHHhcccc
Confidence 4567899999999999999999999988764 3221 210 0112345 6654 44566899999999999998763 3
Q ss_pred -CCCCeeEEEeCcEeecCCCcccccccccEEEEEEeCCC---CCHHHHHHHHHHHHHHhCCC
Q 007706 469 -HPKPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGAN---SGFELIHCLVDRIMEVIGTP 526 (592)
Q Consensus 469 -~~~~~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~g~~---~~f~~ikg~le~ll~~lgi~ 526 (592)
+..|+|+|++|.||+.+...-...++..+..+=+.|.. ++ .++..++..+++.+|++
T Consensus 97 ~~~lP~rl~~~g~vfR~e~p~~gR~REf~Q~g~e~~g~~~~~ad-~e~i~~~~~~l~~lgl~ 157 (421)
T 1h4v_B 97 VWPQPVRLWMAGPMFRAERPQKGRYRQFHQVNYEALGSENPILD-AEAVVLLYECLKELGLR 157 (421)
T ss_pred ccCCCeEEEEecCeecCCCCCCCCcccEEEccEEEECCCChhhh-HHHHHHHHHHHHHcCCC
Confidence 35799999999999755332223356666665344432 23 35667888899999986
No 28
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=97.01 E-value=0.0072 Score=65.50 Aligned_cols=133 Identities=11% Similarity=0.099 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCC--CCCce-eeCCCcCCcccccccchHHHHHHHHhccC-CC
Q 007706 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTD--ESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKD-HP 470 (592)
Q Consensus 395 ~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~--~~~~v-i~NP~s~e~~~lR~SLlpgLL~~~~~N~~-~~ 470 (592)
.+.+.+.+|+.+...||+|+.|..|...+......+...+ .++.. +...-+.+.=+||+.+.|++....+.|.. ..
T Consensus 49 ~~~l~~~i~~~~~~~Gy~eI~tP~le~~el~~~~~G~~~d~~~~~my~~~D~~~g~~l~LRPd~t~~~ar~~~~~~~~~~ 128 (467)
T 4e51_A 49 WEFFEATVKSLLRAYGYQNIRTPIVEHTPLFTRGIGEVTDIVEKEMYSFVDALNGENLTLRPENTAAVVRAAIEHNMLYD 128 (467)
T ss_dssp HHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTCTTSHHHHHTCCEEECTTTCCEEEECSCSHHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHHcCCEEEECCccccHHHhhhccCCcccccccceEEEecCCCCCEEEeCcccHHHHHHHHHHcccccC
Confidence 4567899999999999999999999887642222122100 12344 65533245568999999999999988754 34
Q ss_pred CCeeEEEeCcEeecCCCcccccccccEEEEEEeCCCCCH--HHHHHHHHHHHHHhCCCC
Q 007706 471 KPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGF--ELIHCLVDRIMEVIGTPF 527 (592)
Q Consensus 471 ~~~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~g~~~~f--~~ikg~le~ll~~lgi~~ 527 (592)
.|+|+|++|.||+.+.......++..+..+=+.|...-. .++-.++..+++.||++.
T Consensus 129 lP~r~~~~g~vfR~E~~~~gR~ReF~Q~d~ei~g~~~~~adaEvi~l~~~~l~~lGl~~ 187 (467)
T 4e51_A 129 GPKRLWYIGPMFRHERPQRGRYRQFHQVGVEALGFAGPDADAEIVMMCQRLWEDLGLTG 187 (467)
T ss_dssp SCEEEEEEEEEECCCCC---CCSEEEEEEEEEETCCCSHHHHHHHHHHHHHHHHHTCCC
T ss_pred CCEEEEEEccEEccCCCCCCCcCceEEEEEEEEeCCChHHHHHHHHHHHHHHHHcCCCc
Confidence 689999999999765432233466666666555554333 356688889999999963
No 29
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=96.94 E-value=0.0043 Score=67.03 Aligned_cols=127 Identities=13% Similarity=0.091 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCC--CCCce-eeCCCcCCcccccccchHHHHHHHHhccCC-C
Q 007706 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTD--ESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDH-P 470 (592)
Q Consensus 395 ~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~--~~~~v-i~NP~s~e~~~lR~SLlpgLL~~~~~N~~~-~ 470 (592)
.+.+.+.+|+.+...||+|+.|..|...+. +. ..... .++.. +... +.+.-+||+-+.|++.+.++.|.+. .
T Consensus 46 ~~~i~~~i~~~~~~~Gy~eI~tP~lE~~el-~~--~~~G~~~~~~my~f~D~-~g~~l~LRpd~T~~~aR~~~~~~~~~~ 121 (456)
T 3lc0_A 46 RRHLFDVFHATAKTFGFEEYDAPVLESEEL-YI--RKAGEEITEQMFNFITK-GGHRVALRPEMTPSLARLLLGKGRSLL 121 (456)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEEEGGG-GC--CCSCCHHHHTCEEEECS-SSCEEEECSCSHHHHHHHHHHSCTTCC
T ss_pred HHHHHHHHHHHHHHCCCEEEECCcEeehhh-hc--cccccchhhceEEEEcC-CCCEEecCCcCHHHHHHHHHhcCcccC
Confidence 456788999999999999999999887653 11 11010 12345 6655 4555689999999999999998653 4
Q ss_pred CCeeEEEeCcEeecCCCcccccccccEEEEEEeCCCCCHH--HHHHHHHHHHHHhCC
Q 007706 471 KPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFE--LIHCLVDRIMEVIGT 525 (592)
Q Consensus 471 ~~~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~g~~~~f~--~ikg~le~ll~~lgi 525 (592)
.|+|+|++|.||+.+.......++..++.+=+.|...-.. ++-.++..+++.+|+
T Consensus 122 ~P~r~~y~g~vfR~e~~~~gR~ReF~Q~g~ei~G~~~~~~DaEvi~l~~~~l~~lgl 178 (456)
T 3lc0_A 122 LPAKWYSIPQCWRYEAITRGRRREHYQWNMDIVGVKSVSAEVELVCAACWAMRSLGL 178 (456)
T ss_dssp SSEEEEECCEEECCCC-----CCEEEEEEEEEESCCSTHHHHHHHHHHHHHHHHTTC
T ss_pred CCEEEEEeccEEecCCCCCCCccceEEEEEEEEcCCChHhhHHHHHHHHHHHHHcCC
Confidence 6899999999998654322335677777776666544333 456788888999998
No 30
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=96.90 E-value=0.0028 Score=67.58 Aligned_cols=132 Identities=13% Similarity=0.109 Sum_probs=86.5
Q ss_pred hHHHHHHHHHHHHHHCCceEEeeccccChHHHHHHc--CCC-CCCCCce-eeCCCcCCcccccccchHHHHHHHHhccC-
Q 007706 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTML--NRQ-TDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKD- 468 (592)
Q Consensus 394 ~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~--~~~-~~~~~~v-i~NP~s~e~~~lR~SLlpgLL~~~~~N~~- 468 (592)
..+.+.+.+|+.+...||+|+.|..|.+.+. +..- ... ...++.. +... +.+.-+||+.+.|++....+.+..
T Consensus 18 ~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l-~~~~~g~~~~~~~~~m~~~~D~-~g~~~~Lrp~~t~~~~r~~~~~~~~ 95 (420)
T 1qe0_A 18 KWRYIENQLDELMTFYNYKEIRTPIFESTDL-FARGVGDSTDVVQKEMYTFKDK-GDRSITLRPEGTAAVVRSYIEHKMQ 95 (420)
T ss_dssp HHHHHHHHHHHHHHHHTCEECBCCSEEEHHH-HCC-----------CCEEECHH-HHCCEEECSCSHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHHHHHHcCCEEccCcccchHHH-hhhccCCccchhhhheEEEEcC-CCCEEEeCCCChHHHHHHHHhcccc
Confidence 3567889999999999999999999998763 2211 000 0012334 5433 233458999999999999987654
Q ss_pred --CCCCeeEEEeCcEeecCCCcccccccccEEEEEEeCCCCCH--HHHHHHHHHHHHHhCCCC
Q 007706 469 --HPKPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGF--ELIHCLVDRIMEVIGTPF 527 (592)
Q Consensus 469 --~~~~~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~g~~~~f--~~ikg~le~ll~~lgi~~ 527 (592)
+..|+|+|.+|.||+.+.......++..+..+=+.|..... .++-.++..+++.||++.
T Consensus 96 ~~~~lP~r~~~~g~vfR~E~~~~gR~reF~q~~~e~~~~~~~~~d~e~i~~~~~~l~~lgl~~ 158 (420)
T 1qe0_A 96 GNPNQPIKLYYNGPMFRYERKQKGRYRQFNQFGVEAIGAENPSVDAEVLAMVMHIYQSFGLKH 158 (420)
T ss_dssp GCSSCSEEEEEEEEEECC-------CCEEEEEEEEEESCCCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred ccCCCCeEEEEecCEeecCCCcCCCcccEEEeeEEEECCCCchhHHHHHHHHHHHHHHcCCCc
Confidence 35799999999999765332223456666666555554322 456678888999999973
No 31
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=96.82 E-value=0.0079 Score=64.15 Aligned_cols=131 Identities=11% Similarity=0.107 Sum_probs=90.5
Q ss_pred hHHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCC--CCCce-eeCCCcCCcccccccchHHHHHHHHhccC-C
Q 007706 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTD--ESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKD-H 469 (592)
Q Consensus 394 ~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~--~~~~v-i~NP~s~e~~~lR~SLlpgLL~~~~~N~~-~ 469 (592)
..+++++.+|+.+...||+|+.|..|...+......+..-+ .++.. +... +.+.=+||+-+.|++.+..+.|.. +
T Consensus 20 ~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~-~g~~l~Lrpd~t~~~aR~~~~~~~~~ 98 (423)
T 1htt_A 20 IWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFEDR-NGDSLTLRPEGTAGCVRAGIEHGLLY 98 (423)
T ss_dssp HHHHHHHHHHHHHHTTTCEECBCCSEEEHHHHHHHHCSSSHHHHHTCEEEECT-TSCEEEECSCSHHHHHHHHHHHTCST
T ss_pred HHHHHHHHHHHHHHHcCCEEecccccCHHHHHhhccCCchhhhhhheEEEEcC-CCCEEEeCCCchHHHHHHHHhccccc
Confidence 34578899999999999999999999887642222121100 12345 6665 455568999999999999986643 4
Q ss_pred CCCeeEEEeCcEeecCCCcccccccccEEEEEEeCCCCC--HHHHHHHHHHHHHHhCC
Q 007706 470 PKPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSG--FELIHCLVDRIMEVIGT 525 (592)
Q Consensus 470 ~~~~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~g~~~~--f~~ikg~le~ll~~lgi 525 (592)
..|+|+|.+|.||+.+...-...++..+..+=+.|.... -.++..++..+++.+|+
T Consensus 99 ~~P~rl~~~g~vfR~e~p~~gR~Ref~Q~d~e~~g~~~~~ad~e~i~~~~~~l~~lgl 156 (423)
T 1htt_A 99 NQEQRLWYIGPMFRHERPQKGRYRQFHQLGCEVFGLQGPDIDAELIMLTARWWRALGI 156 (423)
T ss_dssp TCCEEEEEEEEEECCCCCCSSCCSEEEEEEEEEESCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCeEEEEEcCEecCCCCCCCccceeEEeeEEEECCCCchhhHHHHHHHHHHHHHCCC
Confidence 579999999999975533222346666666645554322 22455788889999998
No 32
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=96.57 E-value=0.046 Score=55.47 Aligned_cols=184 Identities=15% Similarity=0.084 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCC--CCCCCce-eeCCCcCCcccccccchHHH-HHHHHhccCCC
Q 007706 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQ--TDESTAV-VGNPRTSDFEVVRTTLMPGI-LKTIGHNKDHP 470 (592)
Q Consensus 395 ~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~--~~~~~~v-i~NP~s~e~~~lR~SLlpgL-L~~~~~N~~~~ 470 (592)
..++.+.+|+.+...||.||-|..|.+..+ .+..+ .+..+.. +. -......||+|- .+ ++.+.. +
T Consensus 18 rs~i~~~ir~~f~~~GF~EVeTP~l~~~~~---~~~~~~~~e~a~~f~~~--~~~~~~~L~~Sp--e~~~~~l~~----~ 86 (294)
T 1nnh_A 18 QTKILEYMTDFFVKEGFKWLLPVIISPITD---PLWPDPAGEGMEPAEVE--IYGVKMRLTHSM--ILHKQLAIA----M 86 (294)
T ss_dssp HHHHHHHHHHHHHHTTCEEECCCCEESCCC---CCCSCTTCCCCCCCEEE--ETTEEEEECSCS--HHHHHHHHH----T
T ss_pred HHHHHHHHHHHHHHCCCEEEECCEEEEccc---hhccCCCCCcceeEEEE--cCCCCEEeccCh--HHHHHHHhh----c
Confidence 346788999999999999999999998711 11111 0111122 21 111234677654 33 222221 2
Q ss_pred CCeeEEEeCcEeecCC--Cc-ccccccccEEEEEEeCCCCCHHHHHHHHHHHHHHhC--C------CCCCCCC-------
Q 007706 471 KPIKIYEVGDVVLLDE--KK-DVGASCRRRLAALYCGANSGFELIHCLVDRIMEVIG--T------PFVPVGD------- 532 (592)
Q Consensus 471 ~~~~lFEiG~V~~~~~--~~-~~~~~~~~~l~~~~~g~~~~f~~ikg~le~ll~~lg--i------~~~~~~~------- 532 (592)
.+.|+|+||+||+.+. .+ .+...+.+++-+-+++. ++.++.+.++.+++.+. + ....+..
T Consensus 87 g~~rvf~ig~~FR~E~pq~~~~RH~~EFtqle~e~~~~--~~~~l~~~~e~l~~~l~~~~~~~~~~~i~~~~~~~r~~y~ 164 (294)
T 1nnh_A 87 GLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVERA--KMEDIMRLIERLVYGLFRKAEEWTGREFPKTKRFEVFEYS 164 (294)
T ss_dssp TCCEEEEEEEEECCCCGGGCSSSCCSEEEEEEEEEETC--CHHHHHHHHHHHHHHHHHHHHHHHSSCCCCCSSCEEEEHH
T ss_pred CccceEEEEccEeCCCCCCCCCccccceeEEEEEecCC--CHHHHHHHHHHHHHHHHHHHHhhhccccccCCCceEeEHH
Confidence 2589999999998765 32 23434677888777775 69999999999887764 1 0000000
Q ss_pred ----------------CccEEEEecCCCCccCC-----ceEEEEEC-CE-EEEEEEE--eCHHHH----Hh---------
Q 007706 533 ----------------DTGYYIQRSDEPEFLPG-----RQASITHK-GK-HVGTFGI--VHPEVL----NN--------- 574 (592)
Q Consensus 533 ----------------~~~~~~~~~~~~~f~pg-----r~A~I~~~-g~-~iG~~Ge--lhP~vl----~~--------- 574 (592)
.....+.....|.+.|- ++.+++++ |. .|+--|+ .||+++ +.
T Consensus 165 ea~~~~g~~~er~~~~~~P~~v~~~P~pf~~~~d~~~~~~~Dl~~~~g~~Ei~~g~~r~~d~~~l~~~~~~~g~~~~~~~ 244 (294)
T 1nnh_A 165 EVLEEFGSDEKASQEMEEPFWIINIPREFYDREVDGFWRNYDLILPYGYGEVASGGEREWEYEKIVAKIRKAGLNEDSFR 244 (294)
T ss_dssp HHHHHTSSHHHHHHHCSSCEEEECCCCCTTBCEETTEECEEEEEETTTTEEEEEEEEBCCCHHHHHHHHHHTTCCGGGGH
T ss_pred HHHHHhCChHhhhhhcCCCEEEEcCChHHhCCCCCCeEEEEEEEECCCcEEEecCeeecCCHHHHHHHHHHcCCCccCHH
Confidence 00011111114455554 78899999 86 6655554 889875 22
Q ss_pred -------CCCCCCEEEEEEecccc
Q 007706 575 -------FDISDPCSFMEIDIENF 591 (592)
Q Consensus 575 -------~~l~~pv~~~El~l~~l 591 (592)
+|.+.|+..|=|-+|.|
T Consensus 245 ~~l~~l~~G~p~P~~G~glGieRL 268 (294)
T 1nnh_A 245 PYLEIAKAGKLKPSAGAGIGVERL 268 (294)
T ss_dssp HHHHHHHTTCCCCEEEEEEEHHHH
T ss_pred HHHHHHhcCCCCCceEEEEcHHHH
Confidence 25556888888877754
No 33
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=96.50 E-value=0.022 Score=61.39 Aligned_cols=128 Identities=12% Similarity=-0.001 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCce-eeCCCcCCcccccccchHHHHHHHHhccCCCCCe
Q 007706 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPI 473 (592)
Q Consensus 395 ~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v-i~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~~ 473 (592)
.+++++.+|+.+...||+|+.|..|...+. +..- ...+.+... +... +.+.=+||+-+.+++.+.++.|. ..|+
T Consensus 31 ~~~i~~~~~~~~~~~Gy~eI~tP~le~~el-~~~~-~g~~~~~~y~f~D~-~g~~l~LRPd~T~~~aR~~~~~~--~~p~ 105 (464)
T 4g84_A 31 REKVFDVIIRCFKRHGAEVIDTPVFELKET-LMGK-YGEDSKLIYDLKDQ-GGELLSLRYDLTVPFARYLAMNK--LTNI 105 (464)
T ss_dssp HHHHHHHHHHHHHHTTCEECBCCSEEEHHH-HTTS-CC----CCCBBCCC-SSCCEEECSCSHHHHHHHHHHTT--CSCE
T ss_pred HHHHHHHHHHHHHHCCCeEEECcccCcHHH-hccc-cCcCcceeEEEECC-CCCEEEeCCcCcHHHHHHHHhcC--CCCc
Confidence 456889999999999999999999977653 2111 111112334 6665 55566899999999999998863 4689
Q ss_pred eEEEeCcEeecCCCc-c-cccccccEEEEEEeCCCCC-H--HHHHHHHHHHHHHhCCCC
Q 007706 474 KIYEVGDVVLLDEKK-D-VGASCRRRLAALYCGANSG-F--ELIHCLVDRIMEVIGTPF 527 (592)
Q Consensus 474 ~lFEiG~V~~~~~~~-~-~~~~~~~~l~~~~~g~~~~-f--~~ikg~le~ll~~lgi~~ 527 (592)
|+|.+|.||+.+... . ...++..++++=+.|.... . .++-.++..+++.+|+..
T Consensus 106 k~~y~g~vfR~erp~~~~gR~Ref~Q~g~ei~G~~~~~~aDaEvi~l~~~~l~~lgl~~ 164 (464)
T 4g84_A 106 KRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGNFDPMIPDAECLKIMCEILSSLQIGD 164 (464)
T ss_dssp EEEEEEEEECCCC------CCSEEEEEEEEEESCCSTTHHHHHHHHHHHHHHHHHTCCC
T ss_pred eeEEEecceeccCCccccCccceeeecceeccCCccchhhHHHHHHHHHHHHHHhCCCC
Confidence 999999999754321 1 1235666776655554222 2 234466777888999863
No 34
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=96.34 E-value=0.026 Score=61.90 Aligned_cols=128 Identities=12% Similarity=0.029 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCce-eeCCCcCCcccccccchHHHHHHHHhccCCCCCe
Q 007706 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPI 473 (592)
Q Consensus 395 ~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v-i~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~~ 473 (592)
.+++++.+|+.+...||+|+.|..|-..+......+ .+.+... +... +.+.=+||+-+.+++.+.++.|. ..|+
T Consensus 84 ~~~ie~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~g--e~~~~my~f~D~-~g~~l~LRPd~T~~~aR~~~~~~--~~p~ 158 (517)
T 4g85_A 84 REKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYG--EDSKLIYDLKDQ-GGELLSLRYDLTVPFARYLAMNK--LTNI 158 (517)
T ss_dssp HHHHHHHHHHHHHHHTCEECBCCSEEEHHHHHCC--------CSCBBCCT-TSCCEEECSCSHHHHHHHHHHTT--CSCE
T ss_pred HHHHHHHHHHHHHHCCCeEEECcccCcHHHhhcccC--cCcceeEEEECC-CCCEEEeCCcCcHHHHHHHHhCC--CCCc
Confidence 456889999999999999999999977654211111 1112234 5554 45556899999999999998864 4589
Q ss_pred eEEEeCcEeecCCCc-cc-ccccccEEEEEEeCCCCC-H--HHHHHHHHHHHHHhCCCC
Q 007706 474 KIYEVGDVVLLDEKK-DV-GASCRRRLAALYCGANSG-F--ELIHCLVDRIMEVIGTPF 527 (592)
Q Consensus 474 ~lFEiG~V~~~~~~~-~~-~~~~~~~l~~~~~g~~~~-f--~~ikg~le~ll~~lgi~~ 527 (592)
|+|++|.||+.+... .. ..|+..++.+=+.|.... . .++-.++..+++.+|+..
T Consensus 159 k~yyig~vfR~Erp~~~~GR~ReF~Q~g~ei~G~~~~~~aDaEvi~l~~~~l~~lgl~~ 217 (517)
T 4g85_A 159 KRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGNFDPMIPDAECLKIMCEILSSLQIGD 217 (517)
T ss_dssp EEEEEEEEECCCC-------CCEEEEEEEEEESCCCTTHHHHHHHHHHHHHHHHHCCCC
T ss_pred eeEEEeceEeccCcccccCccceeeeeceeccCCccchHHHHHHHHHHHHHHHhhcCCc
Confidence 999999999865321 11 246667777655664222 2 235567778888999863
No 35
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=96.15 E-value=0.015 Score=62.85 Aligned_cols=130 Identities=12% Similarity=0.115 Sum_probs=86.1
Q ss_pred hHHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCC-CCCCCce-eeCCCcCCcccccc---cchHHHHHHHHhccC
Q 007706 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQ-TDESTAV-VGNPRTSDFEVVRT---TLMPGILKTIGHNKD 468 (592)
Q Consensus 394 ~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~-~~~~~~v-i~NP~s~e~~~lR~---SLlpgLL~~~~~N~~ 468 (592)
..+++.+.+|+.+...||+|+.|..|.+.+. +..-+.. ...++.. +.+.- .+.-+||+ -+++++.+....+.
T Consensus 69 ~~~~i~~~ir~~~~~~G~~ei~tP~l~~~el-~~~sg~~d~~~~em~~~~d~~-~~~~~LrPt~ee~t~~i~r~~~~s~- 145 (458)
T 2i4l_A 69 VLKKIEQIVREEQNRAGAIELLMPTLQLADL-WRESGRYDAYGPEMLRIADRH-KRELLYGPTNEEMITEIFRAYIKSY- 145 (458)
T ss_dssp HHHHHHHHHHHHHHHTTCEECBCCSEEEHHH-HHHHTHHHHSCTTSEEEECTT-CCEEEECSCCHHHHHHHHHHHCCBG-
T ss_pred HHHHHHHHHHHHHHHcCCEEEEcCccCcHHH-HHhcCCccccccceEEEEeCC-CCeEEECCCChHHHHHHHHHHHhhc-
Confidence 4567889999999999999999999998764 3222210 0113445 65532 33458999 47777777776644
Q ss_pred CCCCeeEEEeCcEeecCCCcccc---cccccEEEEEEeCCC-----CCHHHHHHHHHHHHHHhCCC
Q 007706 469 HPKPIKIYEVGDVVLLDEKKDVG---ASCRRRLAALYCGAN-----SGFELIHCLVDRIMEVIGTP 526 (592)
Q Consensus 469 ~~~~~~lFEiG~V~~~~~~~~~~---~~~~~~l~~~~~g~~-----~~f~~ikg~le~ll~~lgi~ 526 (592)
+..|+++|++|+||+.+.....| .++..+..+-+.|.+ ..+..+......+++.||++
T Consensus 146 ~~lP~rl~~ig~~fR~E~~p~~Gl~R~REF~q~d~~~f~~~~~~ad~e~~~~~~~~~~i~~~lGl~ 211 (458)
T 2i4l_A 146 KSLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDVDEAGARKSYNKMFVAYLRTFARMGLK 211 (458)
T ss_dssp GGCSEEEEEEEEEECCCSSCBTGGGBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred cccCeeeEEecCEeeCCCCCCCCcccccceEEeEEEEEECCHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 35799999999999765222222 356666665444532 23444557788899999987
No 36
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=96.08 E-value=0.015 Score=65.50 Aligned_cols=131 Identities=12% Similarity=0.088 Sum_probs=89.4
Q ss_pred hHHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCC-CCCCce-eeCCCcC-CcccccccchHHHHHHHHhccC--
Q 007706 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQT-DESTAV-VGNPRTS-DFEVVRTTLMPGILKTIGHNKD-- 468 (592)
Q Consensus 394 ~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~-~~~~~v-i~NP~s~-e~~~lR~SLlpgLL~~~~~N~~-- 468 (592)
..+.+.+.+|+.+...||+|+.|..|.+.+. +..-+..+ ..++.. +.. ... +.-+||+..-|++....+.+.+
T Consensus 273 ~~~~l~~~ir~~~~~~Gy~eV~tP~l~~~~l-~~~sG~~d~~~~~mf~~~d-~~~~~~~~LrP~~~~~~~~~~~~~~~sy 350 (645)
T 1nyr_A 273 IRREIERYIVDKEVSMGYDHVYTPVLANVDL-YKTSGHWDHYQEDMFPPMQ-LDETESMVLRPMNCPHHMMIYANKPHSY 350 (645)
T ss_dssp HHHHHHHHHHHHHHHTTEEECBCCSEEETHH-HHHHTHHHHCTTSSCCCEE-ETTTEEEEECSSSHHHHHHHHHTSCCBG
T ss_pred HHHHHHHHHHHHHHHcCCEEEECCeeccHHH-HhhCCCccccccCcceeEe-cCCCeEEEeCCCCCHHHHHHHHhhhhhc
Confidence 4567889999999999999999999998874 22211100 012333 322 112 3347999999999999998865
Q ss_pred CCCCeeEEEeCcEeecCCCcc-cc---cccccEEEEEEeCCCC----CHHHHHHHHHHHHHHhCCC
Q 007706 469 HPKPIKIYEVGDVVLLDEKKD-VG---ASCRRRLAALYCGANS----GFELIHCLVDRIMEVIGTP 526 (592)
Q Consensus 469 ~~~~~~lFEiG~V~~~~~~~~-~~---~~~~~~l~~~~~g~~~----~f~~ikg~le~ll~~lgi~ 526 (592)
+..|+|+|++|.||+.+.... .| .|+..+..+-+-+... .|.++..++..+++.||++
T Consensus 351 r~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~Q~d~~~f~~~~~~~d~~~e~i~~~~~~l~~lGl~ 416 (645)
T 1nyr_A 351 RELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIFVRPDQIKEEFKRVVNMIIDVYKDFGFE 416 (645)
T ss_dssp GGCCEEEEEEEEEECCCCTTTCBTTTBCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHTTCC
T ss_pred cCCCeEEEEeccEEecCCCccccCcceeeeEEEccEEEEcCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 357999999999998654421 22 3555555554434322 3567778889999999995
No 37
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Probab=95.84 E-value=0.036 Score=60.02 Aligned_cols=129 Identities=13% Similarity=0.048 Sum_probs=89.0
Q ss_pred hHHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCC-CCCCCce-eeCCCcCCcccccccchHHHHHHHHhccC--C
Q 007706 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQ-TDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKD--H 469 (592)
Q Consensus 394 ~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~-~~~~~~v-i~NP~s~e~~~lR~SLlpgLL~~~~~N~~--~ 469 (592)
..+.+.+.+|+.+...||+|+.|..|...+. +..-+.. ...++.. + -...+.-+||+...|++....+.+.+ +
T Consensus 51 ~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l-~~~sg~~~~~~~emy~~--d~~~~~l~LRP~~t~~i~~~~~~~~~s~r 127 (471)
T 3a32_A 51 IRYALAEVLAKFHARRGYYVVETPIIASTEL-FKVSGHIEFYRNNMYLF--DIEGHEFAVKPMNCPYHILLFLNEVAKHR 127 (471)
T ss_dssp HHHHHHHHHHHHHHHTTCEECCCCSEEETHH-HHHTCCCTTGGGGSEEE--EETTEEEEECSCSHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHcCCEEEECCeeeehHH-hhhccCccccccceEEE--ecCCcEEEEccccHHHHHHHHHhhhhhcc
Confidence 4567889999999999999999999999875 3332211 1113344 5 12344568999999999999988843 3
Q ss_pred ---CCCeeEEEeCcEeecCCCcc-cc---cccccEEEEEEeCCCC----CHHHHHHHHHHHHHH-hCC
Q 007706 470 ---PKPIKIYEVGDVVLLDEKKD-VG---ASCRRRLAALYCGANS----GFELIHCLVDRIMEV-IGT 525 (592)
Q Consensus 470 ---~~~~~lFEiG~V~~~~~~~~-~~---~~~~~~l~~~~~g~~~----~f~~ikg~le~ll~~-lgi 525 (592)
..|+|+|.+|.||+.+.... .| .++..+..+=+.|... .|.++..+...++.. ||+
T Consensus 128 ~~~~lP~rl~~~g~vfR~E~~~~~~Gl~R~REF~Q~~~e~f~~~~~~~de~~e~i~~~~~~l~~~lGl 195 (471)
T 3a32_A 128 SKLPLPFKVFEFGRVHRYEPSGSIYGLLRVRGFTQDDAHIIVPGGRVIDVVYDVFEEMKLVLERLFKL 195 (471)
T ss_dssp GGSCSSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEEEGGGHHHHHHHHHHHHHHHHHHTSCC
T ss_pred ccccCCeEEeeccceeccCCCcccccceeEEEEEECCeEEEcChHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 67999999999997654321 33 3555554443333322 245677888899999 999
No 38
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=95.71 E-value=0.03 Score=62.09 Aligned_cols=131 Identities=14% Similarity=0.098 Sum_probs=88.9
Q ss_pred hHHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCC-CCCCce-eeCCCcCCcccccccchHHHHHHHHhccC--C
Q 007706 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQT-DESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKD--H 469 (592)
Q Consensus 394 ~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~-~~~~~v-i~NP~s~e~~~lR~SLlpgLL~~~~~N~~--~ 469 (592)
-.+++.+.+|+.+...||+|+.|..|.+.+. +..-+..+ -.++.. +.. ...+.-+||+..-|++....+.+.+ +
T Consensus 49 ~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l-~~~sG~~~~~~~~m~~~~d-~~~~~~~LrP~~~~~~~~~~~~~~~s~~ 126 (572)
T 2j3l_A 49 VLEKLKTIMREEFEKIDAVEMLMPALLPAEL-WKESGRYETYGPNLYRLKD-RNDRDYILGPTHEETFTELIRDEINSYK 126 (572)
T ss_dssp HHHHHHHHHHHHHHTTTCEECBCCSEEETHH-HHHHSHHHHSCTTSCEEEC-TTCCEEEECSCCHHHHHHHHHHHCCBGG
T ss_pred HHHHHHHHHHHHHHHcCCEEEECCccccHHH-HHhcCCccccchheEEEec-CCCCeEEEccccHHHHHHHHHhhccChh
Confidence 3557889999999999999999999999874 33222100 012344 543 2334568999999999998888765 3
Q ss_pred CCCeeEEEeCcEeecCCCccc---ccccccEEEEEEeCCC-----CCHHHHHHHHHHHHHHhCCC
Q 007706 470 PKPIKIYEVGDVVLLDEKKDV---GASCRRRLAALYCGAN-----SGFELIHCLVDRIMEVIGTP 526 (592)
Q Consensus 470 ~~~~~lFEiG~V~~~~~~~~~---~~~~~~~l~~~~~g~~-----~~f~~ikg~le~ll~~lgi~ 526 (592)
..|+|+|++|.+|+.+..... ..|+..+..+-+.+.+ ..+..+..+...+++.||++
T Consensus 127 ~lP~r~~~~g~~fR~E~~~~~Gl~R~ReF~q~d~~~f~~~~~~~~~e~~~~~~~~~~~~~~lgl~ 191 (572)
T 2j3l_A 127 RLPLNLYQIQTKYRDEKRSRSGLLRGREFIMKDGYSFHADEASLDQSYRDYEKAYSRIFERCGLE 191 (572)
T ss_dssp GCCEEEEEEEEEECCCSSCCTGGGSCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred hcCHhhheecCeeccCcCcccCccccceeEEeeeEEEcCCHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 579999999999986543212 2355555555444431 12344556788899999997
No 39
>2cxi_A Phenylalanyl-tRNA synthetase beta chain; aminoacyl-tRNA synthetase, ligase, structural genomics; HET: MSE; 1.94A {Pyrococcus horikoshii}
Probab=95.68 E-value=0.022 Score=59.29 Aligned_cols=66 Identities=18% Similarity=0.161 Sum_probs=59.0
Q ss_pred eEEechHHHHHHhCCCCCHHHHHHHhhhcCCcccccchhHHHHhhhccccccCCCCCCceEEEEecCCCcccccCHHHHH
Q 007706 3 TVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEVPANRYDLLCLEGIA 82 (592)
Q Consensus 3 ~i~~~~~~l~~~~g~~~~~~e~~~~l~~~g~e~e~~~~~~~~~~~~~~~~~~~~~~~~d~i~~ieit~NR~Dlls~~GiA 82 (592)
+|.++.+++.+++|.+++.+|+.++|..+|++++. .++ .+.+.+|+-|+|+..-.=|+
T Consensus 282 ~i~~~~~~i~~~lG~~l~~~~i~~iL~~lg~~~~~-~~~---------------------~~~V~vP~~R~DI~~~~Dli 339 (348)
T 2cxi_A 282 EFEVELDYIRKLSGLELNDGEIKELLEKMMYEVEI-SRG---------------------RAKLKYPAFRDDIMHARDIL 339 (348)
T ss_dssp EEEEEHHHHHHHHTCCCCHHHHHHHHHHTTCEEEE-ETT---------------------EEEEEECTTCCCCCSHHHHH
T ss_pred EEEecHHHHHHHhCCCCCHHHHHHHHHHcCCeEEe-CCC---------------------eEEEECCCCcccCCcccHHH
Confidence 68999999999999999999999999999999952 111 48999999999999999999
Q ss_pred HHHHHhcC
Q 007706 83 QALRVFNK 90 (592)
Q Consensus 83 Rel~a~~g 90 (592)
-|++-++|
T Consensus 340 EEVaR~yG 347 (348)
T 2cxi_A 340 EDVLIAYG 347 (348)
T ss_dssp HHHHHHHT
T ss_pred HHhHHhcC
Confidence 99988776
No 40
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=95.66 E-value=0.17 Score=53.98 Aligned_cols=129 Identities=10% Similarity=0.007 Sum_probs=88.9
Q ss_pred hHHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCce-eeCCCcCCcccccccchHHHHHHHHhccC--CC
Q 007706 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKD--HP 470 (592)
Q Consensus 394 ~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v-i~NP~s~e~~~lR~SLlpgLL~~~~~N~~--~~ 470 (592)
-.+.+.+.+++.+...||+|+.|..|.+.+........+...++.. +.+ +.-+||++--|++....+.+.. +.
T Consensus 174 l~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~~~----~~l~LrPt~e~~i~~~~~~~i~s~~~ 249 (425)
T 2dq3_A 174 LERALINFMLDLHTKKGYKEICPPHLVKPEILIGTGQLPKFEEDLYKCER----DNLYLIPTAEVPLTNLYREEILKEEN 249 (425)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHHHSCTTTTGGGSCBCTT----TCCEECSSTHHHHHGGGTTEEEETTT
T ss_pred HHHHHHHHHHHHHHHcCCEEEECCccccHHHHHhcCCCCcChhhheEecC----CeEEEcCCCcHHHHHHHHhhcccccc
Confidence 3456788889999999999999999999886433322121113344 542 3447999999999988887754 34
Q ss_pred CCeeEEEeCcEeecCCCc----ccc---cccccEEEEEEeCCCC----CHHHHHHHHHHHHHHhCCC
Q 007706 471 KPIKIYEVGDVVLLDEKK----DVG---ASCRRRLAALYCGANS----GFELIHCLVDRIMEVIGTP 526 (592)
Q Consensus 471 ~~~~lFEiG~V~~~~~~~----~~~---~~~~~~l~~~~~g~~~----~f~~ikg~le~ll~~lgi~ 526 (592)
.|++++++|.||+...+. ..| .++..+.-+...+... .+.++......+++.||++
T Consensus 250 LPlrl~~~g~~FR~E~~~~Gr~~~Gl~R~reF~q~E~~~f~~pe~s~~~~~e~i~~~~~il~~LGL~ 316 (425)
T 2dq3_A 250 LPIYLTAYTPCYRREAGAYGKDIRGIIRQHQFDKVELVKIVHPDTSYDELEKLVKDAEEVLQLLGLP 316 (425)
T ss_dssp CCEEEEEEEEEECCCCSCCSSSCSSSSSCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCeEEEEecCEecCCCCcccccccCcccccceEEeeEEEECCHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 699999999999865432 112 2444454443333221 2678889999999999998
No 41
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=95.39 E-value=0.035 Score=58.73 Aligned_cols=152 Identities=11% Similarity=0.083 Sum_probs=94.5
Q ss_pred HHHHHhCCCCCCCCCCCCC-----CCChHHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCC-CCCce-eeCCC
Q 007706 372 DVAIAYGYNNIPKRKPASV-----KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTD-ESTAV-VGNPR 444 (592)
Q Consensus 372 EIar~yGydni~~~~p~~~-----~~~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~-~~~~v-i~NP~ 444 (592)
++++-.|+=-|....+.+. ...-.+.+.+.+|+.+...||+|+.|..|.+.+. +..-+..+. .++.. +. .
T Consensus 5 ~l~~~~~l~~~~~~~~G~~d~lP~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l-~~~sG~~~~~~~em~~~d--~ 81 (401)
T 1evl_A 5 KIGKQLDLYHMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVL-WEKTGHWDNYKDAMFTTS--S 81 (401)
T ss_dssp HHHHHTTCEECCTTSTTCCEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHH-HHHHTHHHHSGGGCCEEE--E
T ss_pred HHHHhCCceEecCCCCcceEECchHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHH-HHhcCcHhhhchhhEeEe--c
Confidence 4455555544444333222 2223456888999999999999999999999874 322111000 01111 11 1
Q ss_pred cCCcccccccchHHHHHHHHhccC--CCCCeeEEEeCcEeecCCCc-ccc---cccccEEEEEEeCCCC----CHHHHHH
Q 007706 445 TSDFEVVRTTLMPGILKTIGHNKD--HPKPIKIYEVGDVVLLDEKK-DVG---ASCRRRLAALYCGANS----GFELIHC 514 (592)
Q Consensus 445 s~e~~~lR~SLlpgLL~~~~~N~~--~~~~~~lFEiG~V~~~~~~~-~~~---~~~~~~l~~~~~g~~~----~f~~ikg 514 (592)
..+.-+||++.-|++....+.+.+ +..|+++|++|.+|+.+... ..| .++..+..+-+-+... .|.++..
T Consensus 82 ~~~~~~LrP~~~~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~~p~~Gl~R~reF~q~d~~~f~~~~~~~~e~~e~i~ 161 (401)
T 1evl_A 82 ENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDEVNGCIR 161 (401)
T ss_dssp TTEEEEECSCSHHHHHHHHTSSCCBGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEECGGGHHHHHHHHHH
T ss_pred CCceEEEcCCCCHHHHHHHHhhhhhhhhCChhhccccceecCCCCcccccccccCcEEecceEEeCCHHHHHHHHHHHHH
Confidence 233458999999999999987755 25799999999999865431 123 3454444443323221 2446788
Q ss_pred HHHHHHHHhCCC
Q 007706 515 LVDRIMEVIGTP 526 (592)
Q Consensus 515 ~le~ll~~lgi~ 526 (592)
....+++.||++
T Consensus 162 ~~~~~~~~lgl~ 173 (401)
T 1evl_A 162 LVYDMYSTFGFE 173 (401)
T ss_dssp HHHHHHHTTTCS
T ss_pred HHHHHHHHcCCC
Confidence 888999999994
No 42
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=95.28 E-value=0.082 Score=56.38 Aligned_cols=129 Identities=9% Similarity=-0.028 Sum_probs=88.2
Q ss_pred hHHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCce-eeCCCcCCcccccccchHHHHHHHHhccC--CC
Q 007706 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKD--HP 470 (592)
Q Consensus 394 ~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v-i~NP~s~e~~~lR~SLlpgLL~~~~~N~~--~~ 470 (592)
-.+.+.+.+++.+...||+|+.+..|.+.+........+...++.. +.+ +--+||++--+++....+.+.. +.
T Consensus 168 l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~~d----~~l~L~Pt~e~~~~~~~~~~~~s~~~ 243 (421)
T 1ses_A 168 YELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAIAE----TDLYLTGTAEVVLNALHSGEILPYEA 243 (421)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHTCTTTTGGGSCBBTT----SSEEECSSTHHHHHHTTTTCEEEGGG
T ss_pred HHHHHHHHHHHHHHHcCCEEEeCCceecHHHHHhcCCCCcCchhcEEEcC----CeEEEeecCcHHHHHHhcccccCchh
Confidence 3456788889999999999999999999886444322221123344 643 3447999999999888877643 34
Q ss_pred CCeeEEEeCcEeecCCCc----ccc---cccccEEEEEE-eCC---C--CCHHHHHHHHHHHHHHhCCC
Q 007706 471 KPIKIYEVGDVVLLDEKK----DVG---ASCRRRLAALY-CGA---N--SGFELIHCLVDRIMEVIGTP 526 (592)
Q Consensus 471 ~~~~lFEiG~V~~~~~~~----~~~---~~~~~~l~~~~-~g~---~--~~f~~ikg~le~ll~~lgi~ 526 (592)
.|++++++|.+|+...++ ..| .++..+.-+.. +.. . ..|.++....+.+++.||++
T Consensus 244 LPlr~~~~g~~FR~E~g~~Gr~~~GL~R~rqF~q~E~~~f~~p~~e~s~~~~~e~~~~~~~il~~LGL~ 312 (421)
T 1ses_A 244 LPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEILRLLELP 312 (421)
T ss_dssp CSEEEEEEEEEECCCCSCCCSCCCTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCEEEEecCCeecCCccccCcCCCCCeeeeeeeeeeEEEEeCCCHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 799999999999865421 122 24444444333 332 1 23668889999999999998
No 43
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1
Probab=94.91 E-value=0.092 Score=56.64 Aligned_cols=133 Identities=14% Similarity=0.099 Sum_probs=88.3
Q ss_pred hHHHHHHHHHHHHHHCCceEEeeccccChHHHHHH-cCCCCC-CCCce-eeCCC---cCCcccccccchHHHHHHHHhcc
Q 007706 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTM-LNRQTD-ESTAV-VGNPR---TSDFEVVRTTLMPGILKTIGHNK 467 (592)
Q Consensus 394 ~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~-~~~~~~-~~~~v-i~NP~---s~e~~~lR~SLlpgLL~~~~~N~ 467 (592)
-.+.+.+.+|+.+...||+|+.|..|.+.+. +.. .+..+. .++.. +..-- ..+.-+||+..-+++....+.+.
T Consensus 40 l~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l-~~~~~G~~~~~~~emy~~~d~g~~~~~~~l~LRP~~~~~i~~~~~~~~ 118 (459)
T 1nj8_A 40 IRRYTFEIIRNLLDESGHDEALFPMLIPEDL-LAKEAEHIKGFEDEVYWVTHGGKTQLDVKLALRPTSETPIYYMMKLWV 118 (459)
T ss_dssp HHHHHHHHHHHHHHHTTCEECBCCSEEEHHH-HHHHCSSSGGGGGGCEEEEESSSSEEEEEEEECSSSHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHcCCEEeeCCcccCHHH-HhhhcCcccccchhhEEEeccCcccCCCeeEECCCCcHHHHHHHHHhh
Confidence 3456788999999999999999999999774 332 221110 12333 43211 13446899999999999999875
Q ss_pred C--CCCCeeEEEeCcEeecCCCcccc---ccccc-EEEEEEeCCC-----CCHHHHHHHHHHHHHHhCCCC
Q 007706 468 D--HPKPIKIYEVGDVVLLDEKKDVG---ASCRR-RLAALYCGAN-----SGFELIHCLVDRIMEVIGTPF 527 (592)
Q Consensus 468 ~--~~~~~~lFEiG~V~~~~~~~~~~---~~~~~-~l~~~~~g~~-----~~f~~ikg~le~ll~~lgi~~ 527 (592)
+ +..|+++|++|.||+.+.....| .|+.. ...+-+.+.+ ..+.++..+...+++.||++.
T Consensus 119 ~s~r~LP~rl~qig~~fR~E~~~~rGl~R~REF~qq~d~~~~~~~~~~a~~e~~~~i~~~~~~~~~LGl~~ 189 (459)
T 1nj8_A 119 KVHTDLPIKIYQIVNTFRYETKHTRPLIRLREIMTFKEAHTAHSTKEEAENQVKEAISIYKKFFDTLGIPY 189 (459)
T ss_dssp CBTTSCCCCEEEEECCBCCCCSCCBTTTBCSBCSCEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred hhcccCCeEEEEEccEecCccCCCCCceEeeeeeccCcEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCce
Confidence 4 35799999999999765431222 24555 4443222321 224457788889999999983
No 44
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=94.89 E-value=0.22 Score=53.59 Aligned_cols=127 Identities=13% Similarity=0.068 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCC-CCCce-eeCCCcCCcccccccchHHHHHHHHhccC--CC
Q 007706 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTD-ESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKD--HP 470 (592)
Q Consensus 395 ~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~-~~~~v-i~NP~s~e~~~lR~SLlpgLL~~~~~N~~--~~ 470 (592)
.+.+.+.+++.+...||+|+.+..|.+.+..... +...+ .++.. +.+ +--+||++--+++....+.+.. +.
T Consensus 196 ~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~s-G~~~~f~~emy~~~d----~~l~LrPt~e~~~~~~~~~~~~s~~~ 270 (455)
T 2dq0_A 196 DLALIRFALDRLIEKGFTPVIPPYMVRRFVEEGS-TSFEDFEDVIYKVED----EDLYLIPTAEHPLAGMHANEILDGKD 270 (455)
T ss_dssp HHHHHHHHHHHHHHTTCEEEECCSEECHHHHHTT-SCTTHHHHTCCBBTT----SSCEECSSTHHHHHHTTTTEEEETTT
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCcccCHHHHHhc-CCCCCChHhhCeecC----CcEEEcCcCcHHHHHHHHhCccCchh
Confidence 4567888899999999999999999998853322 21111 12233 532 3447999999999998887754 45
Q ss_pred CCeeEEEeCcEeecCCCc---c-cc---cccccEEEEE-EeCCC---CCHHHHHHHHHHHHHHhCCC
Q 007706 471 KPIKIYEVGDVVLLDEKK---D-VG---ASCRRRLAAL-YCGAN---SGFELIHCLVDRIMEVIGTP 526 (592)
Q Consensus 471 ~~~~lFEiG~V~~~~~~~---~-~~---~~~~~~l~~~-~~g~~---~~f~~ikg~le~ll~~lgi~ 526 (592)
.|++++++|.+|+..... + .| .++....-+. ++... ..|.++....+.+++.||++
T Consensus 271 LPlr~~~~g~~FR~E~~~~G~~~~GL~R~rqF~kvE~~~f~~pe~s~~~~~e~l~~~~~il~~LGL~ 337 (455)
T 2dq0_A 271 LPLLYVGVSPCFRKEAGTAGKDTKGIFRVHQFHKVEQFVYSRPEESWEWHEKIIRNAEELFQELEIP 337 (455)
T ss_dssp CSEEEEEEEEEECCCTTCSSCSCCSSSSCSEEEEEEEEEEECTTTHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCEEEEEecCcccCCCCccccccCCceeeeeeEeeeEEEecCHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 799999999999865431 1 12 2343333332 23332 13667888999999999998
No 45
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Probab=94.61 E-value=0.21 Score=53.91 Aligned_cols=132 Identities=14% Similarity=0.166 Sum_probs=84.7
Q ss_pred hHHHHHHHHHHHH-HHCCceEEeeccccChHHHHHHcCCCCC-CCCce-eeCC-CcCCcccccccchHHHHHHHHhccC-
Q 007706 394 ALNEFSDLMRLEI-AMNGFTEVLTWILCSSKEISTMLNRQTD-ESTAV-VGNP-RTSDFEVVRTTLMPGILKTIGHNKD- 468 (592)
Q Consensus 394 ~~~~~~~~lr~~l-~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~-~~~~v-i~NP-~s~e~~~lR~SLlpgLL~~~~~N~~- 468 (592)
-.+.+.+.+|+.+ ...||+|+.|..|.+.+..... +..+. .++.. +... ...+.=+||++--|++....+....
T Consensus 66 l~~~l~~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~s-Gh~~~~~~emy~~~d~~~~~~~l~LrPt~~~~~~~~~~~~~~s 144 (460)
T 3uh0_A 66 IFNKLIEFMKLQQKFKFGFNEVVTPLIYKKTLWEKS-GHWENYADDMFKVETTDEEKEEYGLKPMNCPGHCLIFGKKDRS 144 (460)
T ss_dssp HHHHHHHHHHHHHHHTSCCEECCCCSEEEHHHHHHH-TCTTTSGGGSCEECC------CEEECSCSHHHHHHHHTTSCCB
T ss_pred HHHHHHHHHHHHHHHhcCCEEEECCeeccHHHHHhc-CCccccccceEEEecCCCCCceEEEcccCcHHHHHHHHhcccc
Confidence 3456888999999 8999999999999998753322 22111 12333 5432 1234457999999999988777654
Q ss_pred -CCCCeeEEEeCcEeecCCCcc-cc---cccccEEEEEE-eCCC---CCHHHHHHHHHHHH-HHhCCC
Q 007706 469 -HPKPIKIYEVGDVVLLDEKKD-VG---ASCRRRLAALY-CGAN---SGFELIHCLVDRIM-EVIGTP 526 (592)
Q Consensus 469 -~~~~~~lFEiG~V~~~~~~~~-~~---~~~~~~l~~~~-~g~~---~~f~~ikg~le~ll-~~lgi~ 526 (592)
+..|+|++++|.||+...... .| .++..+..+-+ +... ..+.++..+...++ +.||++
T Consensus 145 ~r~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~q~d~~~f~~~e~~~~e~~~~i~~~~~~~~~~lGl~ 212 (460)
T 3uh0_A 145 YNELPLRFSDFSPLHRNEASGALSGLTRLRKFHQDDGHIFCTPSQVKSEIFNSLKLIDIVYNKIFPFV 212 (460)
T ss_dssp GGGCSEEEEECCEEECCCCTTTCBTTTBCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHTTTSCCC
T ss_pred ccccCeEEEEecCeeeCCCCCCCCCceeeeeEEEeeEEEEcCHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 356999999999998654421 23 24444444322 3322 12344667777888 888987
No 46
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=94.25 E-value=0.066 Score=59.63 Aligned_cols=70 Identities=17% Similarity=0.168 Sum_probs=61.4
Q ss_pred eEEechHHHHHHhCCCCCHHHHHHHhhhcCCcccccchhHHHHhhhccccccCCCCCCceEEEEecCCCcccccCHHHHH
Q 007706 3 TVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEVPANRYDLLCLEGIA 82 (592)
Q Consensus 3 ~i~~~~~~l~~~~g~~~~~~e~~~~l~~~g~e~e~~~~~~~~~~~~~~~~~~~~~~~~d~i~~ieit~NR~Dlls~~GiA 82 (592)
+|+++.+++.+++|.+++.+++.++|..+|++++...+ +..+.+.+|+-|+|+..-.=|+
T Consensus 306 ~i~l~~~~i~~llG~~i~~~~i~~iL~~Lgf~~~~~~~--------------------~~~~~V~vPs~R~DI~~e~DLi 365 (589)
T 3l4g_B 306 KEMVRADLINKKVGIRETPENLAKLLTRMYLKSEVIGD--------------------GNQIEIEIPPTRADIIHACDIV 365 (589)
T ss_dssp EEEEEHHHHHHHHTCCCCHHHHHHHHHHTTCEEEECSS--------------------SSEEEEEECSSCTTCCSHHHHH
T ss_pred EEEecHHHHHHhhCCCCCHHHHHHHHHHCCCeEEEcCC--------------------CceEEEECCCCccccCCccHHH
Confidence 68999999999999999999999999999999864321 1159999999999999999999
Q ss_pred HHHHHhcCCC
Q 007706 83 QALRVFNKQQ 92 (592)
Q Consensus 83 Rel~a~~g~~ 92 (592)
-|++-++|-.
T Consensus 366 EEVaRiyGYd 375 (589)
T 3l4g_B 366 EDAAIAYGYN 375 (589)
T ss_dssp HHHHHHHCGG
T ss_pred HHHHHHhCcc
Confidence 9999998853
No 47
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=94.18 E-value=0.048 Score=61.36 Aligned_cols=131 Identities=11% Similarity=0.078 Sum_probs=85.1
Q ss_pred hHHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCC-CCCceeeCCCcCCcccccccchHHHHHHHHhccC--CC
Q 007706 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTD-ESTAVVGNPRTSDFEVVRTTLMPGILKTIGHNKD--HP 470 (592)
Q Consensus 394 ~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~-~~~~vi~NP~s~e~~~lR~SLlpgLL~~~~~N~~--~~ 470 (592)
-.+.+.+.+|+.+...||+|+.|..|.+.+. +..-+..+. .++..- --...+.-+||+..-|++....+.+.+ +.
T Consensus 273 l~~~l~~~~r~~~~~~Gy~ev~tP~l~~~~l-~~~sGh~~~~~~~my~-~d~~~~~~~LrP~~~~~~~~~~~~~~~syr~ 350 (642)
T 1qf6_A 273 IFRELEVFVRSKLKEYQYQEVKGPFMMDRVL-WEKTGHWDNYKDAMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSYRD 350 (642)
T ss_dssp HHHHHHHHHHHHHHHTTCEECCCCSEEETHH-HHHHSHHHHHGGGCEE-EEETTEEEEECSSSHHHHHHHHTTSCEEGGG
T ss_pred HHHHHHHHHHHHHHHcCCEEEECCcCccHHH-HhhcCcccccccccee-eecCCceEEecCCCCHHHHHHHHhhhhhccc
Confidence 3567889999999999999999999999874 222111000 011111 001123348999999999999988754 35
Q ss_pred CCeeEEEeCcEeecCCCc-ccc---cccccEEEEEEeCCC----CCHHHHHHHHHHHHHHhCCC
Q 007706 471 KPIKIYEVGDVVLLDEKK-DVG---ASCRRRLAALYCGAN----SGFELIHCLVDRIMEVIGTP 526 (592)
Q Consensus 471 ~~~~lFEiG~V~~~~~~~-~~~---~~~~~~l~~~~~g~~----~~f~~ikg~le~ll~~lgi~ 526 (592)
.|+|+|++|.||+.+.+. -.| .|+..+..+-+-+.. ..|..+......+++.||++
T Consensus 351 LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~~~i~~~~~i~~~lGl~ 414 (642)
T 1qf6_A 351 LPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDEVNGCIRLVYDMYSTFGFE 414 (642)
T ss_dssp CSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHGGGTCC
T ss_pred cCeEEEEeccEEecCCCccccCCceeeeEEEccEEEEcCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 799999999999866542 123 355554444332221 12445677788889999984
No 48
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=94.14 E-value=0.48 Score=51.50 Aligned_cols=131 Identities=11% Similarity=0.047 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCC-Cce-eeCCCcCCcccccccchHHHHHHHHhccC--CC
Q 007706 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDES-TAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKD--HP 470 (592)
Q Consensus 395 ~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~-~~v-i~NP~s~e~~~lR~SLlpgLL~~~~~N~~--~~ 470 (592)
.+.+.+.+++.+...||+||.+..|.+.+........+...+ +.. +..- ..+--+||++-=+.+....+.... +.
T Consensus 222 ~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~~~~f~e~emf~v~~~-~~~~l~L~PTaE~~~~~l~~~~i~s~~~ 300 (501)
T 1wle_A 222 QHGLVNFTLNKLIHRGFTPMTVPDLLRGVVFEGCGMTPNAKPSQIYNIDPS-RFEDLNLAGTAEVGLAGYFMDHSVAFRD 300 (501)
T ss_dssp HHHHHHHHHHHHHHTTCEEEECCSEECHHHHHHHTCCSSSSSCSSCBBCTT-TSSSCEECSSHHHHHHHHHTTEEEEGGG
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCccccHHHHHhhcCCCccCccccEEEecC-CCCeEEECCcCcHHHHHHHhhccCCccc
Confidence 456788889999999999999999999886444332222112 334 5321 112347999999988877776654 35
Q ss_pred CCeeEEEeCcEeecCCCc---cccc---ccccEEEEE-EeCCC-----CCHHHHHHHHHHHHHHhCCC
Q 007706 471 KPIKIYEVGDVVLLDEKK---DVGA---SCRRRLAAL-YCGAN-----SGFELIHCLVDRIMEVIGTP 526 (592)
Q Consensus 471 ~~~~lFEiG~V~~~~~~~---~~~~---~~~~~l~~~-~~g~~-----~~f~~ikg~le~ll~~lgi~ 526 (592)
.|++++++|.+|...... ..|. ++..+.-+. ++... ..|..+....+.+++.||++
T Consensus 301 LPlrl~~~s~~FR~Ea~~G~d~~GL~RvhqF~kvE~~~f~~pe~e~s~~~~e~~l~~~~~il~~LgLp 368 (501)
T 1wle_A 301 LPIRMVCSSTCYRAETDTGKEPWGLYRVHHFTKVEMFGVTGPGLEQSSELLEEFLSLQMEILTELGLH 368 (501)
T ss_dssp CSEEEEEEEEEECCCCSCC--CCSSSSCSEEEEEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCeeEEeccCcccCCCCCCCCCcCceeeeeeeeeeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 799999999999865430 1121 333333332 23332 34778889999999999998
No 49
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=94.13 E-value=0.71 Score=50.61 Aligned_cols=128 Identities=9% Similarity=0.005 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCce-eeCCCcCCcccccccchHHHHHHHHhccC--CCC
Q 007706 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKD--HPK 471 (592)
Q Consensus 395 ~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v-i~NP~s~e~~~lR~SLlpgLL~~~~~N~~--~~~ 471 (592)
.+.+.+.+++.+...||+|+.+..+.+.+........+...++.. +.+ +--+||++-=+++....+.... +..
T Consensus 278 ~~aL~~~~~~~~~~~Gy~ev~~P~lv~~~l~~~sG~~~~f~e~mf~~~~----~~~~L~PT~E~~~~~l~~~~i~s~~~L 353 (536)
T 3err_A 278 ELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAIAE----TDLYLTGTAEVVLNALHSGEILPYEAL 353 (536)
T ss_dssp HHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHTCTTTTGGGCCEETT----TTEEECSSTHHHHHHHTTTCEEEGGGC
T ss_pred HHHHHHHHHHHHHHcCCEEEeccccccHHHHHhcCCcccChhhceEecC----CCEEEccCCcHHHHHHHhcccccHhhC
Confidence 456778889999999999999999999886444433332223344 654 3458899988887666554433 347
Q ss_pred CeeEEEeCcEeecCCCc---c-ccc---ccccEEEE-EEeCCC-----CCHHHHHHHHHHHHHHhCCC
Q 007706 472 PIKIYEVGDVVLLDEKK---D-VGA---SCRRRLAA-LYCGAN-----SGFELIHCLVDRIMEVIGTP 526 (592)
Q Consensus 472 ~~~lFEiG~V~~~~~~~---~-~~~---~~~~~l~~-~~~g~~-----~~f~~ikg~le~ll~~lgi~ 526 (592)
|++++++|.+|+...++ + .|. ++..+.-+ .++... ..|..+....+.+++.||++
T Consensus 354 Plr~~~~~~~fR~E~gs~Gr~~~GL~RvrqF~k~e~~~f~~pe~e~s~~~~e~~~~~~~~i~~~LgLp 421 (536)
T 3err_A 354 PLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEILRLLELP 421 (536)
T ss_dssp SEEEEEEEEEECCCTTCTTSSCSTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CeeEEEecccccCCccccCCCCCCceeeeeeEEEEEEEEECCchHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 99999999999865421 1 222 33333333 234332 23677888889999999998
No 50
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=94.03 E-value=0.46 Score=51.69 Aligned_cols=132 Identities=12% Similarity=0.117 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCce-eeCC-------CcCCcccccccchHHHHHHHHhc
Q 007706 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNP-------RTSDFEVVRTTLMPGILKTIGHN 466 (592)
Q Consensus 395 ~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v-i~NP-------~s~e~~~lR~SLlpgLL~~~~~N 466 (592)
...+.+.+++.+...||+|+.+..|++.+........+.-.++.. +... ...+--+||++--+++....+..
T Consensus 204 ~raL~~f~~d~~~~~Gy~EV~~P~lv~~el~~~sG~l~~f~eemy~v~~~g~~~~~~~~~~~l~L~PTaE~~l~~l~~~e 283 (522)
T 3vbb_A 204 EQALIQYALRTLGSRGYIPIYTPFFMRKEVMQEVAQLSQFDEELYKVIGKGSEKSDDNSYDEKYLIATSEQPIAALHRDE 283 (522)
T ss_dssp HHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHSCCC-CCSCCCEEC------------CCEEECSSTHHHHHTTSTTC
T ss_pred HHHHHHHHHHHHHHcCCEEEECCcccchHHHhhcCCcccCcccceEeecCCccccccccCcceeEcccCcHHHHHHHhhh
Confidence 446778888888999999999999999886444332222123344 5432 11233478998888876554444
Q ss_pred cC--CCCCeeEEEeCcEeecCCCc---c-ccc---ccccEEEE-EEeCCCC-----CHHHHHHHHHHHHHHhCCC
Q 007706 467 KD--HPKPIKIYEVGDVVLLDEKK---D-VGA---SCRRRLAA-LYCGANS-----GFELIHCLVDRIMEVIGTP 526 (592)
Q Consensus 467 ~~--~~~~~~lFEiG~V~~~~~~~---~-~~~---~~~~~l~~-~~~g~~~-----~f~~ikg~le~ll~~lgi~ 526 (592)
.. +..|++++++|.+|+...++ + .|. ++..+.-+ .++.... .|..+....+.+++.||++
T Consensus 284 i~s~~dLPlr~~~~s~cFR~Eags~GrdtrGL~RvhQF~kvE~~~f~~pe~e~s~~e~e~ml~~~e~il~~LGLp 358 (522)
T 3vbb_A 284 WLRPEDLPIKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMITTAEEFYQSLGIP 358 (522)
T ss_dssp EECTTTCCEEEEEEEEEECSCCCC----CCCSSSCSEEEEEEEEEEECSSTTHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred ecccccCCeeEEEecccccCCCCcCCccCCCcceeeeeEEEEEEEEeCCChHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 32 34699999999999865431 1 121 33333323 2344322 2667788889999999998
No 51
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=93.78 E-value=0.1 Score=59.94 Aligned_cols=69 Identities=17% Similarity=0.316 Sum_probs=61.7
Q ss_pred CeEEechHHHHHHhCCCCCHHHHHHHhhhcCCcccccchhHHHHhhhccccccCCCCCCceEEEEecCCCcccccCHHHH
Q 007706 2 PTVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEVPANRYDLLCLEGI 81 (592)
Q Consensus 2 p~i~~~~~~l~~~~g~~~~~~e~~~~l~~~g~e~e~~~~~~~~~~~~~~~~~~~~~~~~d~i~~ieit~NR~Dlls~~Gi 81 (592)
++|.++.+++.+++|.+++.+++.++|..+|++++... + .+.+.+|+-|+|+..-.=|
T Consensus 404 ~~i~l~~~~i~~~lG~~i~~~~i~~iL~~Lgf~v~~~~-~---------------------~~~V~vPs~R~DI~~e~Dl 461 (795)
T 3pco_B 404 ATITLRRSKLDRLIGHHIADEQVTDILRRLGCEVTEGK-D---------------------EWQAVAPSWRFDMEIEEDL 461 (795)
T ss_dssp CEEEEEHHHHHHHHSSCCCHHHHHHHHHHHTCEEEEET-T---------------------EEEEECCSSCSSCSSHHHH
T ss_pred eEEEecHHHHHHHhCCCCCHHHHHHHHHHCCCeEEeCC-c---------------------eEEEECCCCccccCCccHH
Confidence 47999999999999999999999999999999996321 1 3999999999999999999
Q ss_pred HHHHHHhcCCC
Q 007706 82 AQALRVFNKQQ 92 (592)
Q Consensus 82 ARel~a~~g~~ 92 (592)
+-|++-++|-.
T Consensus 462 iEEVaRiyGyd 472 (795)
T 3pco_B 462 VEEVARVYGYN 472 (795)
T ss_dssp HHHHHHHHCGG
T ss_pred HHHHHHHhCcc
Confidence 99999999853
No 52
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B*
Probab=93.78 E-value=0.11 Score=59.85 Aligned_cols=70 Identities=17% Similarity=0.328 Sum_probs=61.8
Q ss_pred eEEechHHHHHHhCCCCCHHHHHHHhhhcCCcccccchhHHHHhhhccccccCCCCCCceEEEEecCCCcccccCHHHHH
Q 007706 3 TVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEVPANRYDLLCLEGIA 82 (592)
Q Consensus 3 ~i~~~~~~l~~~~g~~~~~~e~~~~l~~~g~e~e~~~~~~~~~~~~~~~~~~~~~~~~d~i~~ieit~NR~Dlls~~GiA 82 (592)
+|.++.+++.+++|.+++.+++.++|..+|++++. .+ + .+.+.+|+-|+|+..-.=|+
T Consensus 408 ~i~l~~~~i~~~lG~~i~~~~i~~iL~~Lg~~v~~-~~--------------------~-~~~V~vPs~R~Di~~e~Dli 465 (795)
T 2rhq_B 408 PIDITAEKVNKTIGFNLSNDEIQSIFRQLGFETTL-KG--------------------E-TLTVNVPSRRKDITIKEDLI 465 (795)
T ss_dssp EEEEEHHHHHHHHTCCCCHHHHHHHHHHTTCEEEE-ET--------------------T-EEEEEEETTCTTCCSHHHHH
T ss_pred eEEecHHHHHHHhCCCCCHHHHHHHHHHCCCeEEe-CC--------------------c-eEEEECCCCccccCCccHHH
Confidence 68999999999999999999999999999999952 11 1 48999999999999999999
Q ss_pred HHHHHhcCCCCC
Q 007706 83 QALRVFNKQQEI 94 (592)
Q Consensus 83 Rel~a~~g~~~~ 94 (592)
-|++-++|-..+
T Consensus 466 EEVaRiyGydnI 477 (795)
T 2rhq_B 466 EEVARIYGYDEI 477 (795)
T ss_dssp HHHHHHHCTTTS
T ss_pred HHHHHHhCcccC
Confidence 999999985433
No 53
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=93.71 E-value=0.65 Score=50.14 Aligned_cols=130 Identities=11% Similarity=0.083 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCce-eeCCCcCCcccccccchHHHHHHHHhccC--CCC
Q 007706 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKD--HPK 471 (592)
Q Consensus 395 ~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v-i~NP~s~e~~~lR~SLlpgLL~~~~~N~~--~~~ 471 (592)
...+.+.+++.+...||+|+++..|++.+........+...++.. +.+. .+--+|+++-=+.+....+.-.. +..
T Consensus 211 ~~aL~~f~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~~~~f~e~mf~v~~~--~~~~~L~PTaE~~l~~l~~~~i~sy~dL 288 (484)
T 3lss_A 211 QVALVSYSLDFLVKRGYTPFYPPFFLNRDVMGEVAQLSQFDEELYQVSGD--GDKKYLIATSEMPIAAYHRGRWFTELKE 288 (484)
T ss_dssp HHHHHHHHHHHHHTTTCEEEECCSEEEHHHHHHHSCHHHHHHTCCEEESS--SSCEEECSSTHHHHHHHTTTCEESCCSS
T ss_pred HHHHHHHHHHHHHHcCCEEEecCccccHHHHHhcCCcccccccceEeecC--CcceEEeccCcHHHHHHHhccccchhhC
Confidence 456778888889999999999999999876433221111012334 6543 33457888877777554443322 346
Q ss_pred CeeEEEeCcEeecCCCc---c-ccc---ccccEEEE-EEeCCCC-----CHHHHHHHHHHHHHHhCCC
Q 007706 472 PIKIYEVGDVVLLDEKK---D-VGA---SCRRRLAA-LYCGANS-----GFELIHCLVDRIMEVIGTP 526 (592)
Q Consensus 472 ~~~lFEiG~V~~~~~~~---~-~~~---~~~~~l~~-~~~g~~~-----~f~~ikg~le~ll~~lgi~ 526 (592)
|++++++|.+|+....+ + .|. ++..+.-+ .++.... .|..+....+.+++.||++
T Consensus 289 Plr~~~~s~cFR~Eags~Grdt~GL~RvrqF~kvE~~~f~~pe~~~s~~e~e~~~~~~e~il~~LGLp 356 (484)
T 3lss_A 289 PLKYAGMSTCFRKEAGAHGRDTLGIFRVHQFDKIEQFVVCSPRQEESWRHLEDMITTSEEFNKSLGLP 356 (484)
T ss_dssp CEEEEEEEEEECCCTTCSSSCCSTTSSCSEEEEEEEEEEECSSTTHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CeeEEeecCccCCCCCcCCcccCCcceeeeEEEEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 99999999999865421 1 222 33333322 2344332 2667778889999999998
No 54
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
Probab=93.66 E-value=0.11 Score=59.54 Aligned_cols=68 Identities=18% Similarity=0.294 Sum_probs=60.7
Q ss_pred eEEechHHHHHHhCCCCCHHHHHHHhhhcCCcccccchhHHHHhhhccccccCCCCCCceEEEEecCCCcccccCHHHHH
Q 007706 3 TVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEVPANRYDLLCLEGIA 82 (592)
Q Consensus 3 ~i~~~~~~l~~~~g~~~~~~e~~~~l~~~g~e~e~~~~~~~~~~~~~~~~~~~~~~~~d~i~~ieit~NR~Dlls~~GiA 82 (592)
+|.++.+++.+++|.+++.+++.+.|..+|++++. .+ + .+.+.+|+-|+|+..-.=|+
T Consensus 403 ~i~l~~~~i~~~lG~~i~~~~i~~iL~~Lg~~v~~-~~--------------------~-~~~V~vPs~R~Di~~e~Dli 460 (785)
T 1b7y_B 403 AIPFRPEYANRLLGTSYPEAEQIAILKRLGCRVEG-EG--------------------P-TYRVTPPSHRLDLRLEEDLV 460 (785)
T ss_dssp CEEECHHHHHHHHTCCCCHHHHHHHHHHTTCEEES-SS--------------------S-SEEEECCTTCCSCCSHHHHH
T ss_pred eEEecHHHHHHHhCCCCCHHHHHHHHHHCCCeEEe-CC--------------------c-eEEEECCCcccccCCccHHH
Confidence 69999999999999999999999999999999952 11 1 38999999999999999999
Q ss_pred HHHHHhcCCC
Q 007706 83 QALRVFNKQQ 92 (592)
Q Consensus 83 Rel~a~~g~~ 92 (592)
-|++-++|-.
T Consensus 461 EEVaRiyGyd 470 (785)
T 1b7y_B 461 EEVARIQGYE 470 (785)
T ss_dssp HHHHHHHCGG
T ss_pred HHHHHHhCcc
Confidence 9999998853
No 55
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=93.49 E-value=0.23 Score=53.76 Aligned_cols=132 Identities=11% Similarity=0.017 Sum_probs=83.2
Q ss_pred hHHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCC-CCCCCce-eeCCCc---CCcccccccchHHHHHHHHhccC
Q 007706 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQ-TDESTAV-VGNPRT---SDFEVVRTTLMPGILKTIGHNKD 468 (592)
Q Consensus 394 ~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~-~~~~~~v-i~NP~s---~e~~~lR~SLlpgLL~~~~~N~~ 468 (592)
..+.+.+.+|+.+...||+|+.|..|.+.+......+.. .-.++.. +..--. .+--+||+..-+++....+.+.+
T Consensus 46 l~~~I~~~~r~~~~~~G~~ei~tP~l~~~el~~~~sgh~d~f~~emy~~~d~g~~~l~~~l~LRP~~~~~i~~~~~~~~~ 125 (477)
T 1hc7_A 46 IWENIQQVLDRMFKETGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAVVTHAGGEELEEPLAVRPTSETVIGYMWSKWIR 125 (477)
T ss_dssp HHHHHHHHHHHHHHHTTCEECBCCSEEESTTC---------CCTTCEEEEEESSSEEEEEEEECSCSHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHcCCEEEecCccccHHHHhhcCCcccccccceEEEECCCCccCCCeEEEcCCCcHHHHHHHHhhhh
Confidence 345688899999999999999999999876421101110 0012333 433110 23458999999999999988855
Q ss_pred --CCCCeeEEEeCcEeecCCCcccc---cccccEEEEEEeCCC-----CCHHHHHHHHHHHH-HHhCCC
Q 007706 469 --HPKPIKIYEVGDVVLLDEKKDVG---ASCRRRLAALYCGAN-----SGFELIHCLVDRIM-EVIGTP 526 (592)
Q Consensus 469 --~~~~~~lFEiG~V~~~~~~~~~~---~~~~~~l~~~~~g~~-----~~f~~ikg~le~ll-~~lgi~ 526 (592)
+..|+++|++|.||+.+.. ..| .|+.....+=+.|.+ ..+..+..+...++ +.||++
T Consensus 126 s~r~LP~rl~qig~vfR~E~~-~rGl~R~REF~q~d~~~~~~~~~~ad~E~~~~l~~~~~i~~~~Lgl~ 193 (477)
T 1hc7_A 126 SWRDLPQLLNQWGNVVRWEMR-TRPFLRTSEFLWQEGHTAHATREEAEEEVRRMLSIYARLAREYAAIP 193 (477)
T ss_dssp BGGGCCEEEEEEEEEECCCSS-CBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred ccccCCeeeEeecCEEeCCCC-CCCcceeEEEEEccEEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCCe
Confidence 3579999999999976533 223 244444433232432 12333445578888 799997
No 56
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C*
Probab=93.23 E-value=0.23 Score=49.72 Aligned_cols=112 Identities=14% Similarity=0.126 Sum_probs=75.6
Q ss_pred HHHHHH--HHHHHCCceEEeeccccChHHHHHHcCCCCCCCCceeeCCCcCCcccccccchHHHHHHHHhccC-CC-CCe
Q 007706 398 FSDLMR--LEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAVVGNPRTSDFEVVRTTLMPGILKTIGHNKD-HP-KPI 473 (592)
Q Consensus 398 ~~~~lr--~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~vi~NP~s~e~~~lR~SLlpgLL~~~~~N~~-~~-~~~ 473 (592)
+++.+| +.+...||+|+.|..|-..+. +. . + .+... +.+.=.||+-+.|++. +++.+ +. .|+
T Consensus 6 le~~~r~~~~~~~~Gy~eI~tP~le~~~l-~~---~----d--~f~d~-~g~~l~LRpd~T~~~a---~~~~~~~~~~p~ 71 (275)
T 1usy_A 6 FEKVFSFYSKATKKGFSPFFVPALEKAEE-PA---G----N--FFLDR-KGNLFSIREDFTKTVL---NHRKRYSPDSQI 71 (275)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEEECSS-CC---S----S--CEEET-TSCEEEECCCHHHHHH---HHHTTCTTCCCE
T ss_pred HHHHHHHHHHHHHCCCEEecCccccchhh-hc---c----c--ccCCC-CCCEEEeCCcChHHHH---HHHhhcCCCCce
Confidence 344444 999999999999998876542 11 1 1 11121 3455689999999999 44444 35 789
Q ss_pred eEEEeCcEeecCCCcccccccccEEEEEEeCCCCCH--HHHHHHHHHHHHHhCCC
Q 007706 474 KIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGF--ELIHCLVDRIMEVIGTP 526 (592)
Q Consensus 474 ~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~g~~~~f--~~ikg~le~ll~~lgi~ 526 (592)
|+|++|.||+.+... .++..++.+=+.|...-. .++-.++..+++.+|++
T Consensus 72 R~~y~g~vfR~e~~~---~Ref~Q~g~ei~g~~~~~~DaEvi~l~~~~l~~lgl~ 123 (275)
T 1usy_A 72 KVWYADFVYRYSGSD---LVAEYQLGLEKVPRNSLDDSLEVLEIIVESASEFFEG 123 (275)
T ss_dssp EEECCEEEEEEETTE---EEEEEEEEEEEESCCSHHHHHHHHHHHHHHHHHHCCS
T ss_pred EEEEeceEEecCCCC---CCeeeEeCEEEecCCCchhHHHHHHHHHHHHHHcCCC
Confidence 999999999865432 267777777566653322 34557778888999986
No 57
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=92.54 E-value=0.15 Score=54.98 Aligned_cols=81 Identities=14% Similarity=0.170 Sum_probs=58.7
Q ss_pred eeccccCCCeEEEecCCCceEEEeCCCcccCChhHHHhhhccccccccccccccCCCceeEEEeCCCCeeecCCcccCCc
Q 007706 164 HDLDTLQGPFTYEALPPSHINFVPLKQTRDFTADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNRTVLSLPPIINGAH 243 (592)
Q Consensus 164 ~Dld~i~~p~~y~~~~~~~i~f~~L~~~~~~~~~el~~l~~~~~~l~~y~~i~~~~~~~~vI~D~~~~vlslagIigg~~ 243 (592)
+|.+++..|+..+...+++ +|.|.+.......++++. +.+..... .+..|+|+++++++++++|+--+..
T Consensus 375 ~~~~~~~~~l~vR~r~~GD-~~~~~g~~g~kklk~~f~----d~kIP~~~-----R~~~pll~~~~~~ii~v~g~~~~~~ 444 (464)
T 3a2k_A 375 VDPASVSLPLRVRTRRRGD-RMVLKGTGGTKKLKEIFI----EAKIPRME-----RDRWPIVEDADGRILWVPGLKKSAF 444 (464)
T ss_dssp ECSTTSCSCEEEEECCTTC-EEECSSSSCEEEHHHHHH----HTTCCHHH-----HHHCEEEEETTCCEEEETTTEECSC
T ss_pred ecHHHcCCCEEEeCCCCCC-EEEECCCCCCcCHHHHHH----hcCCCHHH-----HCCeeEEEECCCcEEEEeccccccc
Confidence 6888888898888877766 888887532233444443 33433321 1346999998457999999999999
Q ss_pred ceeecCCeEEE
Q 007706 244 SAITLKTKNVF 254 (592)
Q Consensus 244 s~It~~T~nI~ 254 (592)
.+++++|++|+
T Consensus 445 ~~~~~~t~~~l 455 (464)
T 3a2k_A 445 EAQNRGQARYI 455 (464)
T ss_dssp SCCSSCSSCEE
T ss_pred cccCCCCceEE
Confidence 99999999985
No 58
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=92.49 E-value=0.6 Score=49.77 Aligned_cols=111 Identities=13% Similarity=0.067 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCce-eeCCCcCCcccccccchHHHHHHHHhccCCCCCe
Q 007706 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPI 473 (592)
Q Consensus 395 ~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v-i~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~~ 473 (592)
..++.+.+|+.|...||.|+-|..|.+... +...+.. +.. -...-.||+|---- ++.+... ..
T Consensus 137 rs~i~~~ir~ff~~~gF~eV~TP~l~~~~~--------e~~~~~f~~~~--~~~~~~L~~Spql~-~~~~~~g-----~~ 200 (429)
T 1wyd_A 137 QSLALKAFRETLYKEGFIEIFTPKIIASAT--------EGGAQLFPVIY--FGKEAFLAQSPQLY-KELMAGV-----VE 200 (429)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEESSCS--------STTCCCCEEEE--TTEEEEECSCCHHH-HHHHHHH-----HS
T ss_pred HHHHHHHHHHHHhhCCCEEEECCEEEeeCC--------CCCceeEEEec--CCceEEecCCcHHH-HHHHHhC-----cC
Confidence 446788999999999999999999986521 1112223 321 12234677554332 2334332 47
Q ss_pred eEEEeCcEeecCCCcc-cccccccEEEEEEeCCCCCHHHHHHHHHHHHHHh
Q 007706 474 KIYEVGDVVLLDEKKD-VGASCRRRLAALYCGANSGFELIHCLVDRIMEVI 523 (592)
Q Consensus 474 ~lFEiG~V~~~~~~~~-~~~~~~~~l~~~~~g~~~~f~~ikg~le~ll~~l 523 (592)
|+|+||+||+.++... ....+.+++-+-+++. ++.++..+++.+++.+
T Consensus 201 rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~--~~~dlm~~~e~ll~~l 249 (429)
T 1wyd_A 201 RVFEVAPAWRAEESDTPFHLAEFISMDVEMAFA--DYNDVMQLLEKILHNI 249 (429)
T ss_dssp EEEEEEEEECCCCCCSSSCCSEEEEEEEEEETC--CHHHHHHHHHHHHHHH
T ss_pred ceEEEcccccccCCccccccceeeEeeeeecCC--CHHHHHHHHHHHHHHH
Confidence 9999999998765422 3334677777777775 6888888888776544
No 59
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=92.04 E-value=0.23 Score=54.08 Aligned_cols=131 Identities=15% Similarity=0.086 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCC-CCCCCCce-eeCCC---cCCcccccccchHHHHHHHHhccC-
Q 007706 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNR-QTDESTAV-VGNPR---TSDFEVVRTTLMPGILKTIGHNKD- 468 (592)
Q Consensus 395 ~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~-~~~~~~~v-i~NP~---s~e~~~lR~SLlpgLL~~~~~N~~- 468 (592)
.+.+.+.+|+.+.. ||+|+.+..|.+.+.....-+. ..-.++.. +..-- ..+.-+||++.-+++....+.+..
T Consensus 74 ~~~i~~~~~~~~~~-G~~ei~tP~l~~~~l~~~~sG~~~~f~~emy~~~d~g~~~~~~~l~LrPt~e~~i~~~~~~~~~s 152 (501)
T 1nj1_A 74 RKNTLKILRRILDR-DHEEVLFPLLVPEDELAKEAIHVKGFEDEVYWVTHGGLSKLQRKLALRPTSETVMYPMFALWVRS 152 (501)
T ss_dssp HHHHHHHHHHHHTT-TCEECCCCSEEEHHHHTTSHHHHHHTTTTCCEEEEETTEEEEEEEEECSSSHHHHHHHHHHHCCB
T ss_pred HHHHHHHHHHHHHc-CCEEEecCcEecHHHHhcccCCcccCCcceEEEecCCCcccCCeeEEccCCCHHHHHHHHhhhcc
Confidence 45678889999989 9999999999987742110000 00012233 43210 023348999999999999998854
Q ss_pred -CCCCeeEEEeCcEeecCCCcccc---ccccc-EEEEEEeCCC-----CCHHHHHHHHHHHHHHhCCC
Q 007706 469 -HPKPIKIYEVGDVVLLDEKKDVG---ASCRR-RLAALYCGAN-----SGFELIHCLVDRIMEVIGTP 526 (592)
Q Consensus 469 -~~~~~~lFEiG~V~~~~~~~~~~---~~~~~-~l~~~~~g~~-----~~f~~ikg~le~ll~~lgi~ 526 (592)
+..|++++.+|.||+.+.....| .++.. +..+-+.+.+ ..+..+..+...+++.||++
T Consensus 153 ~~~LPlr~~q~g~~fR~E~~~~rGl~R~REF~~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~~Lgl~ 220 (501)
T 1nj1_A 153 HTDLPMRFYQVVNTFRYETKHTRPLIRVREITTFKEAHTIHATASEAEEQVERAVEIYKEFFNSLGIP 220 (501)
T ss_dssp TTTCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred cccCCEEEEeecCEeeCCCCCCCCCceeEEEeeeeeEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCe
Confidence 35799999999999865431223 24444 4443222221 23455678888999999998
No 60
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=91.99 E-value=0.65 Score=49.57 Aligned_cols=111 Identities=9% Similarity=0.044 Sum_probs=71.9
Q ss_pred hHHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCce-eeCCCcCCcccccccchHHHH-HHHHhccCCCC
Q 007706 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGIL-KTIGHNKDHPK 471 (592)
Q Consensus 394 ~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v-i~NP~s~e~~~lR~SLlpgLL-~~~~~N~~~~~ 471 (592)
...++.+.+|+.|...||.|+-|..|.+... +...+.. + | .....-.||+|- .|. +.+.. .
T Consensus 137 ~rs~i~~~ir~~f~~~gF~eVeTP~l~~~~~--------e~~~~~f~~-~-~~~~~~~Lr~Sp--el~~~~~~~-----g 199 (434)
T 1x54_A 137 VKETLIMAAREWLLKDGWHEVFPPILVTGAV--------EGGATLFKL-K-YFDKYAYLSQSA--QLYLEAAIF-----G 199 (434)
T ss_dssp HHHHHHHHHHHHHHHTTCEECCCCSEESCCS--------SCGGGCCEE-E-ETTEEEEECSCS--HHHHHHHHH-----H
T ss_pred HHHHHHHHHHHHHHHCCCEEEeCcEEEeecC--------CCCceeEEE-e-ecCCcEEeccCh--HHHHHHHhc-----C
Confidence 3456788999999999999999999986521 0111222 3 1 112234788543 332 22221 1
Q ss_pred CeeEEEeCcEeecCCCcc-cccccccEEEEEEeCCCCCHHHHHHHHHHHHHHh
Q 007706 472 PIKIYEVGDVVLLDEKKD-VGASCRRRLAALYCGANSGFELIHCLVDRIMEVI 523 (592)
Q Consensus 472 ~~~lFEiG~V~~~~~~~~-~~~~~~~~l~~~~~g~~~~f~~ikg~le~ll~~l 523 (592)
+.|+|+||+||+.++... ....+.+++-+-+++. ++.++..+++.+++.+
T Consensus 200 ~~rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~--~~~dlm~~~e~ll~~l 250 (434)
T 1x54_A 200 LEKVWSLTPSFRAEKSRTRRHLTEFWHLELEAAWM--DLWDIMKVEEELVSYM 250 (434)
T ss_dssp HSEEEEEEEEECCCCCCCSSCCSEEEEEEEEEETC--CHHHHHHHHHHHHHHH
T ss_pred ccceEEEecceecCCCCCcccccEEEEeeEEEcCC--CHHHHHHHHHHHHHHH
Confidence 579999999998765422 3334677888777775 6999988888877654
No 61
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803}
Probab=90.63 E-value=0.59 Score=51.01 Aligned_cols=134 Identities=16% Similarity=0.081 Sum_probs=84.0
Q ss_pred hHHHHHHHHHHHHHHCCceEEeeccccChHHHHH-HcCCCCCCCCce-eeCCC---cCCcccccccchHHHHHHHHhccC
Q 007706 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEIST-MLNRQTDESTAV-VGNPR---TSDFEVVRTTLMPGILKTIGHNKD 468 (592)
Q Consensus 394 ~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~-~~~~~~~~~~~v-i~NP~---s~e~~~lR~SLlpgLL~~~~~N~~ 468 (592)
-.+.+.+.+|+.+...||+|+.+..|.+.+.... ......-.++.. +..-- ..+-=+||++--|++....+...+
T Consensus 57 i~~~L~~~~~~~~~~~Gy~eV~tP~l~~~el~~k~sgh~~~f~~emy~v~d~g~~~~~~~l~LrPt~e~~i~~~~~~~i~ 136 (518)
T 3ial_A 57 MENAIMRLCEEEYAKVGISQILFPTVIPESFLKKESDHIKGFEAECFWVEKGGLQPLEERLALRPTSETAIYSMFSKWVR 136 (518)
T ss_dssp HHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTSSHHHHHHHGGGCEEEEEETTEEEEEEEEECSSSHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHcCCEEEEcccccCHHHHHhhcCCcccccccEEEEecCCCcccCcceeECCCCcHHHHHHHHhhhc
Confidence 3456888899999999999999999988764210 000000012333 43311 123458999999999999887764
Q ss_pred --CCCCeeEEEeCcEeecCCCcccc---cccccEEEEEEeCCC-----CCHHHHHHHHHHHH-HHhCCCC
Q 007706 469 --HPKPIKIYEVGDVVLLDEKKDVG---ASCRRRLAALYCGAN-----SGFELIHCLVDRIM-EVIGTPF 527 (592)
Q Consensus 469 --~~~~~~lFEiG~V~~~~~~~~~~---~~~~~~l~~~~~g~~-----~~f~~ikg~le~ll-~~lgi~~ 527 (592)
+.+|++++++|.||+.......| .++....-+-..|.+ ..+..+......++ +.||++.
T Consensus 137 SyrdLPlrl~q~~~~fR~E~~~~~GL~R~REF~q~e~h~f~~~~e~a~~e~~~~l~~~~~i~~~~LGlp~ 206 (518)
T 3ial_A 137 SYKDLPLKIHQTCTIFRHETKNTKPLIRVREIHWNEAHCCHATAEDAVSQLSDYWKVIDTIFSDELCFKG 206 (518)
T ss_dssp BGGGCCEEEEEEEEEECTTCCSCBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHTTTTCCCC
T ss_pred ccccCCeEEEEEeceecCCCCCCCCCceeeEEEEeeEEEEECCHHHHHHHHHHHHHHHHHHHHHhcCCcE
Confidence 35799999999999865322233 244444444333221 12444555667888 8899974
No 62
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=89.21 E-value=1.2 Score=48.01 Aligned_cols=129 Identities=9% Similarity=0.099 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCce-eeCCCcCCcccccccchHHHHHHHHhc-c-C---
Q 007706 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHN-K-D--- 468 (592)
Q Consensus 395 ~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v-i~NP~s~e~~~lR~SLlpgLL~~~~~N-~-~--- 468 (592)
.+.+.+.+++.+...||+|+.+..|++.+........+...++.. +.+. .+--+|+++-=-.+- .+-.| . +
T Consensus 188 ~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~l~~f~eemf~v~~~--~~~~~LipTaE~pl~-~l~~~ei~~S~y 264 (485)
T 3qne_A 188 NQALINYGLSFLSSKGYVPLQAPVMMNKEVMAKTAQLSQFDEELYKVIDG--EDEKYLIATSEQPIS-AYHAGEWFESPA 264 (485)
T ss_dssp HHHHHHHHHHHHHTTTCEEEECCSEEEHHHHHHHSCHHHHTTTCCEEEET--TEEEEECSSTHHHHH-HHTTTCEESSHH
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCCccccccceEEEeCC--CCeEEEeccccHHHH-HHHhccccccch
Confidence 345777888888999999999999999886433221111112344 6542 222345443322233 33333 2 2
Q ss_pred CCCCeeEEEeCcEeecCCCc---c-ccc---ccccEEEE-EEeCCC---CCHHHHHHHHHHHHHHhCCC
Q 007706 469 HPKPIKIYEVGDVVLLDEKK---D-VGA---SCRRRLAA-LYCGAN---SGFELIHCLVDRIMEVIGTP 526 (592)
Q Consensus 469 ~~~~~~lFEiG~V~~~~~~~---~-~~~---~~~~~l~~-~~~g~~---~~f~~ikg~le~ll~~lgi~ 526 (592)
+.+|++++++|.+|+..... + .|. ++..+.-+ .++... ..|..+....+.+++.||++
T Consensus 265 ~dLPlr~~~~s~cfR~Eag~~Grdt~GL~RvhqF~kvE~~~f~~pe~s~~e~e~ml~~~e~il~~LgLp 333 (485)
T 3qne_A 265 EQLPVRYAGYSSCFRREAGSHGKDAWGIFRVHAFEKIEQFVLTEPEKSWEEFDRMIGCSEEFYQSLGLP 333 (485)
T ss_dssp HHCCEEEEEEEEEECSCCC-----CCSSSSCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHTTCC
T ss_pred hcCCeeEEEecccccCCCCCCCccCCCceeeeeeeeeeEEEEeCHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 23699999999999765432 1 222 33333222 223332 23677888899999999998
No 63
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens}
Probab=88.84 E-value=1.8 Score=47.26 Aligned_cols=133 Identities=15% Similarity=0.080 Sum_probs=82.7
Q ss_pred hHHHHHHHHHHHHHHCCceEEeeccccChHHHHHH-cCCCCC-CCCce-eeCCCc---CCcccccccchHHHHHHHHhcc
Q 007706 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTM-LNRQTD-ESTAV-VGNPRT---SDFEVVRTTLMPGILKTIGHNK 467 (592)
Q Consensus 394 ~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~-~~~~~~-~~~~v-i~NP~s---~e~~~lR~SLlpgLL~~~~~N~ 467 (592)
-.+.+.+.+++.+...||+|+.+..|.+.+. +.. -+.... .++.. +...-. .+.-+||++--|++....+...
T Consensus 63 i~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l-~~k~sGh~~~f~~emy~~~d~g~~~l~e~l~LrPtse~~i~~~~~~~i 141 (519)
T 4hvc_A 63 IWEAIKDFFDAEIKKLGVENCYFPMFVSQSA-LEKEKTHVADFAPEVAWVTRSGKTELAEPIAIRPTSETVMYPAYAKWV 141 (519)
T ss_dssp HHHHHHHHHHHHHHHTTCEECBCCSEEEHHH-HTTSCCSCGGGGGGCEEEEEETTEEEEEEEEECSSSHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCEEEeccccccHHH-HhcccCCcccccccceEEeccCCcccccceeeCCCCcHHHHHHHHhhc
Confidence 3456788899999999999999999998774 321 111110 12223 432111 1235899999999999888776
Q ss_pred C--CCCCeeEEEeCcEeecCCCcccc---cccccEEEEEEeCCC-----CCHHHHHHHHHHHHHHh-CCCC
Q 007706 468 D--HPKPIKIYEVGDVVLLDEKKDVG---ASCRRRLAALYCGAN-----SGFELIHCLVDRIMEVI-GTPF 527 (592)
Q Consensus 468 ~--~~~~~~lFEiG~V~~~~~~~~~~---~~~~~~l~~~~~g~~-----~~f~~ikg~le~ll~~l-gi~~ 527 (592)
+ +.+|+|++++|.||+.......| .++....-+-..+.+ ..+..+..+...+++.| +++.
T Consensus 142 ~SyrdLPlrl~q~g~~fR~E~~~~~Gl~R~ReF~q~e~h~~~~~~e~a~~E~~~~l~~~~~i~~~ll~lp~ 212 (519)
T 4hvc_A 142 QSHRDLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFATMEEAAEEVLQILDLYAQVYEELLAIPV 212 (519)
T ss_dssp SSGGGCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHTTSCCCC
T ss_pred cccccCCeEEEEEcCeeeCCCCCCCCCcceeEEEEeeEEEEecCHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 4 34799999999999865332233 233333333221221 12444556677788876 7763
No 64
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=88.64 E-value=1.8 Score=44.60 Aligned_cols=113 Identities=12% Similarity=-0.032 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCce-e--eCCCcC--CcccccccchHHHHH--HHHhcc
Q 007706 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-V--GNPRTS--DFEVVRTTLMPGILK--TIGHNK 467 (592)
Q Consensus 395 ~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v-i--~NP~s~--e~~~lR~SLlpgLL~--~~~~N~ 467 (592)
..++.+.+|+.|...||.||-|..|++.... +....+. + -.|-.. ..-+||+| |.|-+ .++..
T Consensus 39 Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~~-------~a~~~~F~~~~~~~~~~~~~~~yL~~S--pql~~k~l~~~g- 108 (345)
T 3a5y_A 39 RAAIMAEIRRFFADRGVLEVETPCMSQATVT-------DIHLVPFETRFVGPGHSQGMNLWLMTS--PEYHMKRLLVAG- 108 (345)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEESSCCC-------CTTCCCCEEEECCSTTSCCEEEEECSC--SHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHCCCEEEECCEEEecCCC-------CCccceEEEEecCcccccCCCEeecCC--HHHHHHHHHHcC-
Confidence 3467888999999999999999999964310 0001122 2 113111 22467776 33322 23322
Q ss_pred CCCCCeeEEEeCcEeecCCCcccccccccEEEEEEeCCCCCHHHHHHHHHHHHHHh
Q 007706 468 DHPKPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVI 523 (592)
Q Consensus 468 ~~~~~~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~g~~~~f~~ikg~le~ll~~l 523 (592)
. -|+||||+||+.++.+.....|.+++-+=.++ .++.++..++|.+++.+
T Consensus 109 ---~-~rvyqIg~~FR~E~~~~rH~pEFt~lE~e~af--~d~~d~m~~~E~li~~v 158 (345)
T 3a5y_A 109 ---C-GPVFQLCRSFRNEEMGRYHNPEFTMLEWYRPH--YDMYRLMNEVDDLLQQV 158 (345)
T ss_dssp ---C-CSEEEEEEEECCCCCBTTBCSEEEEEEEEEET--CCHHHHHHHHHHHHHHH
T ss_pred ---C-CcEEEEEcceeCCCCcccccchhheeeeeeeC--CCHHHHHHHHHHHHHHH
Confidence 2 48999999998766544444556666654455 37888888887777643
No 65
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=88.13 E-value=2.5 Score=45.79 Aligned_cols=111 Identities=16% Similarity=0.108 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCce-ee-CCCcCCcccccccchHHHHH-HHHhccCCCCC
Q 007706 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VG-NPRTSDFEVVRTTLMPGILK-TIGHNKDHPKP 472 (592)
Q Consensus 396 ~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v-i~-NP~s~e~~~lR~SLlpgLL~-~~~~N~~~~~~ 472 (592)
.++.+.+|+.|...||.||-|..|++... + ...... +. |-.. ..-+||+|- .|.. .+-. +--
T Consensus 178 s~i~~~iR~ff~~~gF~EVeTPiL~~~~~-----G---a~a~~F~~~~~~~~-~~~yLr~Sp--qLylk~l~v----~G~ 242 (493)
T 3a74_A 178 SLIIQSMRRYLDSHGYLEVETPMMHAVAG-----G---AAARPFITHHNALD-MTLYMRIAI--ELHLKRLIV----GGL 242 (493)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEESSCC-----S---SSSCCCEEEETTTT-EEEEECSCS--HHHHHHHHH----TTC
T ss_pred HHHHHHHHHHHHhCCeEEEECCeEEecCC-----C---CcccceEecccCCC-ceeEEecCH--HHHHHHHhh----ccc
Confidence 45778899999999999999999996521 1 001222 32 4333 234688764 3433 2111 123
Q ss_pred eeEEEeCcEeecCCCcccccccccEEEEEEeCCCCCHHHHHHHHHHHHHHh
Q 007706 473 IKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVI 523 (592)
Q Consensus 473 ~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~g~~~~f~~ikg~le~ll~~l 523 (592)
-|+||||++|+.++.+..+..|.+++-+=+++ +++.++-.+++.++..+
T Consensus 243 ~rVyeig~~FR~E~~~~rH~pEFT~lE~e~af--~d~~dlm~l~E~ll~~l 291 (493)
T 3a74_A 243 EKVYEIGRVFRNEGISTRHNPEFTMLELYEAY--ADFRDIMKLTENLIAHI 291 (493)
T ss_dssp CEEEEEEEEECCCCCBTTBCSEEEEEEEEEET--CCHHHHHHHHHHHHHHH
T ss_pred CceEEECccccCCCCCcccCCceeEEEEEecC--CCHHHHHHHHHHHHHHH
Confidence 79999999998765544445566676665565 37888887777776543
No 66
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=87.48 E-value=2.8 Score=45.57 Aligned_cols=111 Identities=9% Similarity=0.028 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCce-e-eCCCcCCcccccccchHHHHH-HHHhccCCCCC
Q 007706 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-V-GNPRTSDFEVVRTTLMPGILK-TIGHNKDHPKP 472 (592)
Q Consensus 396 ~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v-i-~NP~s~e~~~lR~SLlpgLL~-~~~~N~~~~~~ 472 (592)
.++.+.+|+.|...||.||-|..|++... + ...... + .|-... .-+||+|-- |.. .+-. +--
T Consensus 187 s~i~~~iR~f~~~~gFlEVeTPiL~~~~~-----G---a~ar~F~t~~~~~~~-~~yL~~Spq--Lylk~L~v----~G~ 251 (504)
T 1e1o_A 187 SKILAAIRQFMVARGFMEVETPMMQVIPG-----G---ASARPFITHHNALDL-DMYLRIAPE--LYLKRLVV----GGF 251 (504)
T ss_dssp HHHHHHHHHHHHTTTCEECCCCSEESSCC-----S---SCCCCCEEEETTTTE-EEEECSCSH--HHHHHHHH----HTC
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEecCC-----C---CcccceEeccCCCCc-eEEeccCHH--HHHHHHhh----cCC
Confidence 35678899999999999999999996521 1 001222 3 244333 346887643 332 2211 112
Q ss_pred eeEEEeCcEeecCCCcccccccccEEEEEEeCCCCCHHHHHHHHHHHHHHh
Q 007706 473 IKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVI 523 (592)
Q Consensus 473 ~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~g~~~~f~~ikg~le~ll~~l 523 (592)
-|+||||++|+.++.+..+..|.+++-+=+++ +++.++-.+++.++..+
T Consensus 252 ~rVyeIg~~FR~E~~~~rH~pEFt~lE~e~af--~d~~dlm~l~E~li~~~ 300 (504)
T 1e1o_A 252 ERVFEINRNFRNEGISVRHNPEFTMMELYMAY--ADYHDLIELTESLFRTL 300 (504)
T ss_dssp CEEEEEEEEECCCCCCC-CCSEEEEEEEEEES--CCHHHHHHHHHHHHHHH
T ss_pred CcEEEEcccccCCCCCccccCceeeeeeeecC--CCHHHHHHHHHHHHHHH
Confidence 68999999998765543444566666655555 37888887777776543
No 67
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=87.04 E-value=1.6 Score=46.42 Aligned_cols=112 Identities=13% Similarity=0.027 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCce-eeCCCcCCcccccccchHHHHHHHHhccCCCCCe
Q 007706 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPI 473 (592)
Q Consensus 395 ~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v-i~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~~ 473 (592)
..++.+.+|+.|...||.|+-|..|.+.... ...+.. + + .-...-.||+|---- ++.+. + + ..
T Consensus 128 rs~i~~~ir~~f~~~gF~EV~TPil~~~~~e--------~~~~~f~~-~-~~g~~~~L~~Spel~-~~~l~-~---g-~~ 191 (422)
T 1n9w_A 128 QAALVRGFRRYLDRQDFTEIFTPKVVRAGAE--------GGSGLFGV-D-YFEKRAYLAQSPQLY-KQIMV-G---V-FE 191 (422)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCC--------------------------------------CHHH-HHHHH-H---H-HS
T ss_pred HHHHHHHHHHHHHHCCCEEEECCEEEEeCCC--------CCceeEEE-e-eCCCcEEeeeCHHHH-HHHHh-h---C-CC
Confidence 3467889999999999999999999865320 001222 3 1 111234677554332 34444 2 1 36
Q ss_pred eEEEeCcEeecCCCcc-cccccccEEEEEEeCCCCCHHHHHHHHHHHHHHh
Q 007706 474 KIYEVGDVVLLDEKKD-VGASCRRRLAALYCGANSGFELIHCLVDRIMEVI 523 (592)
Q Consensus 474 ~lFEiG~V~~~~~~~~-~~~~~~~~l~~~~~g~~~~f~~ikg~le~ll~~l 523 (592)
|+|+||+||+.++... ....+.+++-+-+++. .++.++-.+++.++..+
T Consensus 192 rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~-~d~~dlm~l~e~ll~~l 241 (422)
T 1n9w_A 192 RVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFI-ADEEDLMRLEEALLAEM 241 (422)
T ss_dssp EEEEEEEC-------------CCEEEEEEEESC-SSHHHHHHHHHHHHHHH
T ss_pred ceeEEeCceECCCCCCCcccceeEEeeeeeeCC-CCHHHHHHHHHHHHHHH
Confidence 9999999998764321 2334677777766763 15777766666665433
No 68
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A*
Probab=85.47 E-value=1.6 Score=44.93 Aligned_cols=174 Identities=9% Similarity=-0.017 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCce-eeCC-----------------------CcCCccc
Q 007706 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNP-----------------------RTSDFEV 450 (592)
Q Consensus 395 ~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v-i~NP-----------------------~s~e~~~ 450 (592)
...+.+.+|+ ....||+|+.+..+++.+.....-..+.-..... +... +..+--+
T Consensus 67 ~~aLe~~~~~-~~~~Gy~ev~~P~lv~~~~~e~SGhl~~F~e~mf~v~~~~~d~~e~~~ll~~~~~~~~~~~~l~~~d~~ 145 (346)
T 3mf2_A 67 VERLAALITS-HREAGTEALRFPPVMSRAQLEKSGYLKSFPNLLGCVCGLHGTEREINAAVSRFDAGGDWTTSLSPADLV 145 (346)
T ss_dssp HHHHHHHHHH-TCCTTCEEEECCSEEEHHHHHHTTHHHHCGGGCEEEEEECSCHHHHHHHHHHHHTTSCGGGGEEEEEEE
T ss_pred HHHHHHHHHh-hHhcCCeEEECCCccCHHHHHhcCCcccChhhcceeecccccchhhhhhhhhhccccccccccCCCCEE
Confidence 3456667777 7788999999999999886322111000001222 2211 0112347
Q ss_pred ccccchHHHHHHHHhc-cCCCCCeeEEEeCcEeecCCCc-ccccccccEEEEEEeCCC----CCHHHHHHHHHHHHHHhC
Q 007706 451 VRTTLMPGILKTIGHN-KDHPKPIKIYEVGDVVLLDEKK-DVGASCRRRLAALYCGAN----SGFELIHCLVDRIMEVIG 524 (592)
Q Consensus 451 lR~SLlpgLL~~~~~N-~~~~~~~~lFEiG~V~~~~~~~-~~~~~~~~~l~~~~~g~~----~~f~~ikg~le~ll~~lg 524 (592)
|.++-=|.+....+.- .....|+++.+.|.||+...+- -...++..+.-++..+.. .-.+.+...++.+++.||
T Consensus 146 LiPtacvpl~~~~~~eg~i~~~plr~~~~g~CFR~EaS~GL~RvhqF~kvE~v~~~tpEqs~~e~e~l~~~ae~il~~Lg 225 (346)
T 3mf2_A 146 LSPAACYPVYPIAASRGPLPKGGLRFDVAADCFRREPSKHLDRLQSFRMREYVCIGTPDDVSDFRERWMVRAQAIARDLG 225 (346)
T ss_dssp ECSSSSTTHHHHHHTTCSCCTTCEEEEEEEEEECCCCCSSTTSCSEEEEEEEEEEESHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EcccccHHHHHHHccCCcccccCeEEEEECCccCCcCCCCCeeeeeeEEEEEEEEeCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 8999999999988853 4434589999999999876531 111244556665554432 235567788899999999
Q ss_pred CCCCCCCCCccEEEEecCCCCccC------------CceEEEEE----C--CEEEEEEEEeCHHHHHhCCCC
Q 007706 525 TPFVPVGDDTGYYIQRSDEPEFLP------------GRQASITH----K--GKHVGTFGIVHPEVLNNFDIS 578 (592)
Q Consensus 525 i~~~~~~~~~~~~~~~~~~~~f~p------------gr~A~I~~----~--g~~iG~~GelhP~vl~~~~l~ 578 (592)
++ |.+....++.|-. .+.-++.+ . ...|+.+--.----.+.|+|+
T Consensus 226 Lp---------yrv~~~~D~~f~~~G~l~~~~Q~~~~~kyDlevw~p~~~~y~EisS~Sn~~dfqarR~~Ir 288 (346)
T 3mf2_A 226 LT---------FRVDYASDPFFGRVGQMKAVSQKQQQLKFELLIPLRSEEQPTACMSFNYHREHFGTTWGIQ 288 (346)
T ss_dssp CC---------CEEEECCCCCCHHHHHHHHHHHHHTTCEEEEEECSSCSSSCEEEEEEEECTTHHHHHHTCB
T ss_pred CC---------EEEEEccCCCcCcccchhhhccccccceEEEEEEcCCCCCeeEEEeeecccchhhhhhcce
Confidence 98 6666555555542 23455544 1 225555554434444555554
No 69
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=85.24 E-value=2.8 Score=45.75 Aligned_cols=111 Identities=10% Similarity=0.073 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCce-eeCCCcCCcccccccchHHHHHH-HHhccCCCCCee
Q 007706 397 EFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKT-IGHNKDHPKPIK 474 (592)
Q Consensus 397 ~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v-i~NP~s~e~~~lR~SLlpgLL~~-~~~N~~~~~~~~ 474 (592)
++.+.+|+.|...||.||-|..|++... +. ..+..+ -.|-...+ -+||.| |.|..- +.. .+. -|
T Consensus 181 ~i~~~iR~f~~~~gF~EVeTPiL~~~~g-----Ga--~a~~F~t~~~~~~~~-~yL~~S--pqL~lk~liv---~g~-~r 246 (521)
T 3bju_A 181 KIITYIRSFLDELGFLEIETPMMNIIPG-----GA--VAKPFITYHNELDMN-LYMRIA--PELYHKMLVV---GGI-DR 246 (521)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESSCC-----SS--SCCCCEEEETTTTEE-EEECSC--SHHHHHHHHH---TTC-CE
T ss_pred HHHHHHHHHHHHCCCEEEeCceeeccCC-----Cc--cccceeeecccCCcc-eEeeCC--HHHHHHHHHh---cCc-Cc
Confidence 5677899999999999999999986421 10 001122 23544333 478876 555432 221 111 58
Q ss_pred EEEeCcEeecCCCcccccccccEEEEEEeCCCCCHHHHHHHHHHHHHHh
Q 007706 475 IYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVI 523 (592)
Q Consensus 475 lFEiG~V~~~~~~~~~~~~~~~~l~~~~~g~~~~f~~ikg~le~ll~~l 523 (592)
+||||++|+..+...++..|.+++-+=.+. +++.++-.++|.++..+
T Consensus 247 Vyeig~~FR~E~~~trH~pEFtmlE~e~af--~d~~dlm~l~E~li~~v 293 (521)
T 3bju_A 247 VYEIGRQFRNEGIDLTHNPEFTTCEFYMAY--ADYHDLMEITEKMVSGM 293 (521)
T ss_dssp EEEEEEEECCSCCBTTBCSEEEEEEEEEET--CCHHHHHHHHHHHHHHH
T ss_pred eEEEEcceeCCCCCCccchhhhhhhhhhhc--CCHHHHHHHHHHHHHHH
Confidence 999999998765443444556666654455 47999888888877644
No 70
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=84.06 E-value=3.4 Score=45.07 Aligned_cols=110 Identities=12% Similarity=0.069 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCce-eeCCCcCCcccccccchHHHHH-H-HHhccCCCCC
Q 007706 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILK-T-IGHNKDHPKP 472 (592)
Q Consensus 396 ~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v-i~NP~s~e~~~lR~SLlpgLL~-~-~~~N~~~~~~ 472 (592)
.++.+.+|+.|...||.||-|..|++... +. ..+..+ -.|-...+ -+||.| |.|-. . +.. + -
T Consensus 208 s~i~~~iR~ff~~~gFlEVeTPiL~~~~g-----GA--~a~pF~t~~n~~~~~-~yL~~S--pqLylk~L~v~----G-~ 272 (529)
T 4ex5_A 208 TKAIASIRKFMGDADFMEVETPMLHPIPG-----GA--AAKPFVTHHNALDME-MFLRIA--PELYLKRLIVG----G-F 272 (529)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEESSCC-----SS--SSCCCEEEETTTTEE-EEECSC--SHHHHHHHHHT----T-C
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeeccCC-----CC--cccccccccccCCcc-eecccC--HHHHHHHHHhc----C-C
Confidence 35678899999999999999999996421 00 001122 34544333 367776 45542 2 221 1 2
Q ss_pred eeEEEeCcEeecCCCcccccccccEEEEEEeCCCCCHHHHHHHHHHHHHH
Q 007706 473 IKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEV 522 (592)
Q Consensus 473 ~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~g~~~~f~~ikg~le~ll~~ 522 (592)
-|+||||++|+..+.+.....|.+++-+=.+. +++.++-.++|.++..
T Consensus 273 ~rVyeIg~~FR~E~~~~rH~pEFtmlE~e~af--~d~~dlm~l~E~li~~ 320 (529)
T 4ex5_A 273 ERVFEINRNFRNEGVSPRHNPEFTMMEFYAAY--TDYRWLMDFTERLIRQ 320 (529)
T ss_dssp SEEEEEEEEECCSCCBTTBCSEEEEEEEEEET--CCHHHHHHHHHHHHHH
T ss_pred CcEEEeehheecCCCCCCcccHhHhhhhhhhc--CCHHHHHHHHHHHHHH
Confidence 68999999998765443444555666654454 4788888877777654
No 71
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=83.98 E-value=2.2 Score=46.36 Aligned_cols=78 Identities=9% Similarity=0.007 Sum_probs=51.0
Q ss_pred ccccccchHHH----HHHHHhccCCCCCeeEEEeCcEeecCCCcccc---cccccEEEEEE-eCC-CC--CHHHHHHHHH
Q 007706 449 EVVRTTLMPGI----LKTIGHNKDHPKPIKIYEVGDVVLLDEKKDVG---ASCRRRLAALY-CGA-NS--GFELIHCLVD 517 (592)
Q Consensus 449 ~~lR~SLlpgL----L~~~~~N~~~~~~~~lFEiG~V~~~~~~~~~~---~~~~~~l~~~~-~g~-~~--~f~~ikg~le 517 (592)
-+||+...+|+ -+.+..+ ++..|++++++|.+|+.+...-.| .|+..+.-+-+ +.. .+ .+.++.....
T Consensus 183 ~~LRPE~t~~i~~~~~~~~~sy-~r~LP~rl~qig~~FR~E~~pr~GL~R~REF~q~d~~~f~~~e~~~~~~~~~i~~~~ 261 (505)
T 1ati_A 183 AYLRPETAQGIFVNFKNVLDAT-SRKLGFGIAQIGKAFRNEITPRNFIFRVREFEQMEIEYFVRPGEDEYWHRYWVEERL 261 (505)
T ss_dssp EEECSSSHHHHHHTHHHHHHHH-TCCSSEEEEEEEEEEBCCSSCCTGGGSCSEEEEEEEEEEECGGGHHHHHHHHHHHHH
T ss_pred eeecccchhHHHHHHHHHHHhc-CCCCCEEEEEeeceeeCCCCCCCCCCcccceEEeeEEEEECHHHHHHHHHHHHHHHH
Confidence 47999999998 3444443 236899999999999765322222 24444433322 222 22 2777888999
Q ss_pred HHHHHhCCCC
Q 007706 518 RIMEVIGTPF 527 (592)
Q Consensus 518 ~ll~~lgi~~ 527 (592)
.+++.||++.
T Consensus 262 ~i~~~LGl~~ 271 (505)
T 1ati_A 262 KWWQEMGLSR 271 (505)
T ss_dssp HHHHHTTCCG
T ss_pred HHHHHcCCCe
Confidence 9999999974
No 72
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=83.13 E-value=4.5 Score=44.30 Aligned_cols=110 Identities=13% Similarity=0.020 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCceeeCCCcCCcccccccchHHHHHHHHhccCCCCCeeE
Q 007706 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAVVGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIKI 475 (592)
Q Consensus 396 ~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~vi~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~~~l 475 (592)
.++.+.+|+.|...||.||-|..|++..- ... .+....|-...+ -+||+|-=--+-..++. + --|+
T Consensus 248 s~i~~~iR~ff~~~gF~EVeTPiL~~~~~-egg-------a~~F~v~~~~~~-~yL~~Spql~~k~ll~~----g-~~rV 313 (548)
T 3i7f_A 248 SACCGLFREFLTSQKFVEIHTPKLIGCSS-EGG-------SNIFEVKYFDRK-AYLAQSPQLYKQMAIMG----D-FRKV 313 (548)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSBC----------------------------CCBCSCTHHHHHHHHTT----T-CCEE
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEecccC-CCC-------cceeEEecCCCc-eEeccCHHHHHHHHHhc----C-cCcE
Confidence 35677789999999999999999987641 000 111112222233 37887743322233332 2 2689
Q ss_pred EEeCcEeecCCCc-ccccccccEEEEEEeCCCCCHHHHHHHHHHHH
Q 007706 476 YEVGDVVLLDEKK-DVGASCRRRLAALYCGANSGFELIHCLVDRIM 520 (592)
Q Consensus 476 FEiG~V~~~~~~~-~~~~~~~~~l~~~~~g~~~~f~~ikg~le~ll 520 (592)
||||++|+..+.. ..+..|.+++-+-++ -..++.++-.+++.++
T Consensus 314 feI~~~FR~E~~~t~RHl~EFtmlE~e~a-f~~d~~d~m~~~E~li 358 (548)
T 3i7f_A 314 FEVGPVFRAENSNTRRHLTEFEGLDIEME-IVENYHECIDVMEKLF 358 (548)
T ss_dssp EEEEEECCCSCCCSSSCCSCEEEEEEEEE-CSSCTHHHHHHHHHHH
T ss_pred EEEeeeEecCCCCCCCcchhhhchhhhhh-hhcCHHHHHHHHHHHH
Confidence 9999999865432 233345556654222 1225666655555544
No 73
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Probab=82.83 E-value=1.3 Score=48.21 Aligned_cols=132 Identities=12% Similarity=0.142 Sum_probs=82.2
Q ss_pred HHHHHHHHHHH-HHHCCceEEeeccccChHHHHHHcCCCCCCCCce-eeCC-----------------------------
Q 007706 395 LNEFSDLMRLE-IAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNP----------------------------- 443 (592)
Q Consensus 395 ~~~~~~~lr~~-l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v-i~NP----------------------------- 443 (592)
.+.+.+.+++. +...||+|+.+..|.+.+..........-.+... +...
T Consensus 234 ~~~L~~~~~~e~~~~~G~~EV~tP~L~~~el~~~SGh~~~F~demy~v~~~~~Rd~~~~e~~~~~~~~~~~~~~~~~~~~ 313 (522)
T 2cja_A 234 FRTFEKIVLEELLEPLGYREMIFPKLVTWEVWMKSGHAKGVYPEIYYVCPPQTRDPDYWEEVADYYKVTHEVPTKLIKEK 313 (522)
T ss_dssp HHHHHHHHHHHTHHHHTCEECBCCSEEEHHHHHHHTGGGTCGGGCCEEECBSCCCHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCEEEECCCcccHHHHhhcCCcCccccceeeeecCCccchhhhhhhhhhhhccccccccccccc
Confidence 44667777864 7888999999999999886333211111112334 5311
Q ss_pred CcCCcccccccchHHHHHHHHhccC--CCCCeeEEE-eCcEeecCCCcccc---cccccEEEEEEeCCC----CCHHHHH
Q 007706 444 RTSDFEVVRTTLMPGILKTIGHNKD--HPKPIKIYE-VGDVVLLDEKKDVG---ASCRRRLAALYCGAN----SGFELIH 513 (592)
Q Consensus 444 ~s~e~~~lR~SLlpgLL~~~~~N~~--~~~~~~lFE-iG~V~~~~~~~~~~---~~~~~~l~~~~~g~~----~~f~~ik 513 (592)
+..+--+|||+--+++....+.+.. +..|++++. +|.+|+.......| .++..+.-+.+-+.. ..+.++.
T Consensus 314 ~~~~~l~LrPt~e~~i~~~f~~~i~s~~~LPlrl~q~ig~~FR~Epgs~~GL~R~REF~q~E~~~F~~pe~s~ee~ee~i 393 (522)
T 2cja_A 314 IAEPIGGMCYAQCPPFWMYVAGETLPNEEIPVKVFDRSGTSHRYESGGIHGIERVDEFHRIEIVWIGTKEEVLKCAEELH 393 (522)
T ss_dssp BCCCCEEECSSSSGGGGGGTTTCEECGGGCSEEEEECSSEEECCCSSSCCCTTSCSEEEEEEEEEEEEHHHHHHHHHHHH
T ss_pred cCCCcEEEccCCcHHHHHHHHhcccccccCCeeEEEEcCceEeCCCCCCCCCeEeEEEEEeeEEEEeChHHHHHHHHHHH
Confidence 1234568999999998888876543 346999999 99999876321111 244444444332221 1244555
Q ss_pred -HHHHHHHHHhCCC
Q 007706 514 -CLVDRIMEVIGTP 526 (592)
Q Consensus 514 -g~le~ll~~lgi~ 526 (592)
...+.+++.||++
T Consensus 394 ~~~~~~~l~~LGLp 407 (522)
T 2cja_A 394 DRYMHIFNDILDIE 407 (522)
T ss_dssp HHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHcCCC
Confidence 6777888999997
No 74
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=81.14 E-value=9.8 Score=41.97 Aligned_cols=113 Identities=13% Similarity=0.080 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCcee-eCCCcCCcccccccchHHHHHHHHhccCCCCCee
Q 007706 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAVV-GNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIK 474 (592)
Q Consensus 396 ~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~vi-~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~~~ 474 (592)
.++.+.+|+.|...||.||-|..|++..- ....+.++ .|-...++=.||+| |.|.+-+-- ..+. =|
T Consensus 148 s~i~~~iR~fl~~~gF~EVeTPiL~~s~~--------eGAr~F~v~~~~~~~~~y~L~qS--PQl~kq~Lm--v~G~-~r 214 (580)
T 1l0w_A 148 HRVIKAIWDFLDREGFVQVETPFLTKSTP--------EGARDFLVPYRHEPGLFYALPQS--PQLFKQMLM--VAGL-DR 214 (580)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSSBCCCS--------SSSCCCEEECTTSTTEEEECCSC--SHHHHHHHH--HTTC-SE
T ss_pred HHHHHHHHHHHHhCCcEEEeCCEEecCCC--------CCCCCccccccccCCceeECccC--HHHHHHHHH--Hhcc-CC
Confidence 35678899999999999999999995421 00112222 22111223347765 555544311 0111 58
Q ss_pred EEEeCcEeecCCCcccccccccEEEEEEeCCCCCHHHHHHHHHHHHHHh
Q 007706 475 IYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVI 523 (592)
Q Consensus 475 lFEiG~V~~~~~~~~~~~~~~~~l~~~~~g~~~~f~~ikg~le~ll~~l 523 (592)
+||||++|+.++......-|.+++-+=.+. +++.++-.++|.++..+
T Consensus 215 vfqI~~~FR~E~~~~~r~pEFT~lE~e~af--~d~~dvm~~~E~li~~i 261 (580)
T 1l0w_A 215 YFQIARCFRDEDLRADRQPDFTQLDLEMSF--VEVEDVLELNERLMAHV 261 (580)
T ss_dssp EEEEEEEECCCCCCSSCCSEEEEEEEEEES--CCHHHHHHHHHHHHHHH
T ss_pred eEEEeceeeCCCCCCCcCCCccceeeeecC--CCHHHHHHHHHHHHHHH
Confidence 999999998655432222355666554454 47888888888776544
No 75
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=80.79 E-value=11 Score=41.48 Aligned_cols=113 Identities=10% Similarity=0.116 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCcee-eCCCcCCcccccccchHHHHHHHHhccCCCCCee
Q 007706 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAVV-GNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIK 474 (592)
Q Consensus 396 ~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~vi-~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~~~ 474 (592)
.++.+.+|+.|...||.||-|..|++..- ....+.++ .|-...++=.||+| |.|.+-+.- ..+. =|
T Consensus 142 s~i~~~iR~fl~~~gFlEVeTPiL~~s~~--------eGAr~F~v~~~~~~~~~y~L~qS--PQl~kq~Lm--v~G~-~r 208 (585)
T 1c0a_A 142 AKITSLVRRFMDDHGFLDIETPMLTKATP--------EGARDYLVPSRVHKGKFYALPQS--PQLFKQLLM--MSGF-DR 208 (585)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSSBCCCS--------SSSCCCEEECSSSTTCEEECCSC--SHHHHHHHH--HTTC-CE
T ss_pred HHHHHHHHHHHHhCCcEEEeCCEEecCCC--------CCCccceecccccCCceEeCccC--HHHHHHHHH--hcCC-Cc
Confidence 35678899999999999999999995421 00122222 22222233348765 555444211 0111 58
Q ss_pred EEEeCcEeecCCCcccccccccEEEEEEeCCCCCHHHHHHHHHHHHHHh
Q 007706 475 IYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVI 523 (592)
Q Consensus 475 lFEiG~V~~~~~~~~~~~~~~~~l~~~~~g~~~~f~~ikg~le~ll~~l 523 (592)
+||||++|+..+......-|.+++-+=++. +++.++-.++|.++..+
T Consensus 209 vfqI~~~FR~E~~~t~r~pEFT~lE~e~af--~d~~dvm~~~E~li~~i 255 (585)
T 1c0a_A 209 YYQIVKCFRDEDLRADRQPEFTQIDVETSF--MTAPQVREVMEALVRHL 255 (585)
T ss_dssp EEEEEEEECCCCCBTTBCSEEEEEEEEEES--CCHHHHHHHHHHHHHHH
T ss_pred eEEEeceeecCCCCCCcCcccceeeeeecC--CCHHHHHHHHHHHHHHH
Confidence 999999998654432222255566554454 37888888777776543
No 76
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=80.63 E-value=6.7 Score=41.74 Aligned_cols=109 Identities=13% Similarity=0.130 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCce-eeCCCcCCcccccccchHHHHHHHHhccCCCCCee
Q 007706 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIK 474 (592)
Q Consensus 396 ~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v-i~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~~~ 474 (592)
.++.+.+|+.|...||.||-|..|++..- +.+.+.+ +... ...-+||+| |.|-+-.. ...+ --|
T Consensus 141 s~i~~~iR~f~~~~gF~EVeTPiL~~~~~--------eg~~~~f~~~~~--~~~~yL~~S--pql~~q~l--~~~g-~~r 205 (438)
T 3nem_A 141 SSVFKAVRDFFHENGFIEIHTPKIIATAT--------EGGTELFPMKYF--EEDAFLAQS--PQLYKQIM--MASG-LDR 205 (438)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEESSCS--------SCSSSCCEEEET--TEEEEECSC--SHHHHHHG--GGTT-CCE
T ss_pred HHHHHHHHHHHHHCCcEEEeCCEEecCCC--------CCCccceeEeeC--CccEEEecC--hHHHHHHH--HhcC-CCc
Confidence 45778899999999999999999987531 0112233 3211 122467766 44443221 1112 269
Q ss_pred EEEeCcEeecCCCc-ccccccccEEEEEEeCCCCC-HHHHHHHHHHHHH
Q 007706 475 IYEVGDVVLLDEKK-DVGASCRRRLAALYCGANSG-FELIHCLVDRIME 521 (592)
Q Consensus 475 lFEiG~V~~~~~~~-~~~~~~~~~l~~~~~g~~~~-f~~ikg~le~ll~ 521 (592)
+||||++|+.++.. ..+..|.+++-+=.++. + +.++-.++|.++.
T Consensus 206 vf~i~~~FR~E~~~t~RH~pEFt~le~e~a~~--~~~~d~m~~~E~li~ 252 (438)
T 3nem_A 206 VYEIAPIFRAEEHNTTRHLNEAWSIDSEMAFI--EDEEEVMSFLERLVA 252 (438)
T ss_dssp EEEEEEEECCCSSCCTTCCSEEEEEEEEEESC--SSHHHHHHHHHHHHH
T ss_pred eEEEcceEECCCCCCcccccceeeeeeeeccC--ccHHHHHHHHHHHHH
Confidence 99999999865432 12334566666544553 5 8887766666653
No 77
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=80.18 E-value=3 Score=44.38 Aligned_cols=110 Identities=8% Similarity=-0.010 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCceeeCCCcCCcccccccchHHHHHHHHhccCCCCCeeE
Q 007706 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAVVGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIKI 475 (592)
Q Consensus 396 ~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~vi~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~~~l 475 (592)
.++.+.+|+.|...||.||-|..|++..- ..+..+.-.|-. ...-.||.| |.|..-..- . + --|+
T Consensus 136 s~i~~~iR~ff~~~gFlEVeTPiL~~s~~--------eG~~~~F~~~~~-g~~~~L~~S--pqLylq~l~--~-g-~~rv 200 (435)
T 2xgt_A 136 AAATRAMREHFYNAGYVEVAPPTLVQTQV--------EGGSTLFNLDYF-GEQSFLTQS--SQLYLETCI--P-T-LGDV 200 (435)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEESCCS--------SCTTSCCEEEET-TEEEEECSC--SHHHHHHHH--H-H-HCSE
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEeeccC--------CCchhceeeccC-CcccccCCC--hHHHHHHhh--h-c-cCce
Confidence 35778899999999999999999976421 001122211211 112356665 333222211 0 1 1489
Q ss_pred EEeCcEeecCCCc-ccccccccEEEEEEeCCCCCHHHHHHHHHHHHHH
Q 007706 476 YEVGDVVLLDEKK-DVGASCRRRLAALYCGANSGFELIHCLVDRIMEV 522 (592)
Q Consensus 476 FEiG~V~~~~~~~-~~~~~~~~~l~~~~~g~~~~f~~ikg~le~ll~~ 522 (592)
||||++|+.++.. ..+..|.+++-+=.++ +++.++-.++|.++..
T Consensus 201 feIg~~FR~E~~~t~RH~~EFT~lE~e~af--~d~~d~m~~~E~li~~ 246 (435)
T 2xgt_A 201 FCIAQSYRAEKSRTRRHLAEYAHVEAECPF--ITLDDLMEKIEELVCD 246 (435)
T ss_dssp EEEEEEECCCSSCCTTCCSEEEEEEEEEES--CCHHHHHHHHHHHHHH
T ss_pred EEEecceecCCCCccccccceeEEEEEEec--CCHHHHHHHHHHHHHH
Confidence 9999999865432 2344466666655555 3788877777766543
No 78
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=76.23 E-value=13 Score=40.18 Aligned_cols=107 Identities=16% Similarity=0.147 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCce-eeCCCcCCcccccccchHHHH-HHHHhccCCCCCe
Q 007706 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGIL-KTIGHNKDHPKPI 473 (592)
Q Consensus 396 ~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v-i~NP~s~e~~~lR~SLlpgLL-~~~~~N~~~~~~~ 473 (592)
.++.+.+|+.|...||.||-|..|++..- +.+.... +.. ....-.||+| |.|. +.+-. ...-
T Consensus 182 s~i~~~ir~~~~~~gF~EV~TPil~~~~~--------~~ga~~f~~~~--~~~~~~L~~S--pql~~k~l~~----~g~~ 245 (487)
T 1eov_A 182 AGVCELFREYLATKKFTEVHTPKLLGAPS--------EGGSSVFEVTY--FKGKAYLAQS--PQFNKQQLIV----ADFE 245 (487)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEESSCS--------SSSSCCCEEEE--TTEEEEECSC--THHHHHHHHH----TTCC
T ss_pred HHHHHHHHHHHHhCCcEEEeCCEEEEecC--------CCCcccceecc--CCccEEcccC--hHHHHHHHHh----cCCC
Confidence 35677889999999999999999987531 1112233 332 1223567755 3332 22211 1237
Q ss_pred eEEEeCcEeecCCCc-ccccccccEEEEEE-eCCCCCHHHHHHHHHHHH
Q 007706 474 KIYEVGDVVLLDEKK-DVGASCRRRLAALY-CGANSGFELIHCLVDRIM 520 (592)
Q Consensus 474 ~lFEiG~V~~~~~~~-~~~~~~~~~l~~~~-~g~~~~f~~ikg~le~ll 520 (592)
|+||||++|+.++.. .....|.+++-+=+ .+ .++.++-.+++.++
T Consensus 246 rvy~ig~~FR~E~~~~~Rh~pEFt~le~e~af~--~~~~dlm~l~E~ll 292 (487)
T 1eov_A 246 RVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFE--EHYHEVLDTLSELF 292 (487)
T ss_dssp EEEEEEEEECCCCCCCTTCCSEEEEEEEEEECS--SCTHHHHHHHHHHH
T ss_pred ceEEEeccEecCCCCCCccchhhhhhhhhhhhh--cCHHHHHHHHHHHH
Confidence 999999999865432 12223555655422 22 24566555555544
No 79
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=75.95 E-value=11 Score=42.52 Aligned_cols=40 Identities=15% Similarity=0.195 Sum_probs=32.2
Q ss_pred cCCcccccccchHHH----HHHHHhccCCCCCeeEEEeCcEeecC
Q 007706 445 TSDFEVVRTTLMPGI----LKTIGHNKDHPKPIKIYEVGDVVLLD 485 (592)
Q Consensus 445 s~e~~~lR~SLlpgL----L~~~~~N~~~~~~~~lFEiG~V~~~~ 485 (592)
...--+|||-..+|. -+.+..| .+..|+++++||.+|+..
T Consensus 236 ~~~~~~LRPEtaqg~f~~f~r~~~~~-~~~LP~~~aqiG~~fRnE 279 (693)
T 2zt5_A 236 GNMPGYLRPETAQGIFLNFKRLLEFN-QGKLPFAAAQIGNSFRNE 279 (693)
T ss_dssp SSSEEEECSCSHHHHHTTHHHHHHHT-TTCSCEEEEEEEEEECCC
T ss_pred CCcceeeccccchHHHHHHHHHHHHh-CcCCCEEEEeecceecCC
Confidence 445678999999999 7777777 346899999999999754
No 80
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=75.08 E-value=18 Score=40.02 Aligned_cols=112 Identities=12% Similarity=0.102 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHH-HCCceEEeeccccChHHHHHHcCCCCCCCCcee-eCCCcCCcccccccchHHHHHHHHhccCCCCCe
Q 007706 396 NEFSDLMRLEIA-MNGFTEVLTWILCSSKEISTMLNRQTDESTAVV-GNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPI 473 (592)
Q Consensus 396 ~~~~~~lr~~l~-~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~vi-~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~~ 473 (592)
.++.+.+|+.|. ..||.||-|..|++... ......++ .|- ...+-.||+| |.|.+-+.- ..+. -
T Consensus 152 s~i~~~iR~f~~~~~gF~EVeTPiL~~st~--------~GA~~F~v~~~~-~g~~~~L~qS--pql~kq~l~--v~g~-~ 217 (617)
T 4ah6_A 152 SQMVMKMREYLCNLHGFVDIETPTLFKRTP--------GGAKEFLVPSRE-PGKFYSLPQS--PQQFKQLLM--VGGL-D 217 (617)
T ss_dssp HHHHHHHHHHHHTTSCCEECCCCSSBCCCC--------SSSCCCEEECSS-TTCEEECCSS--TTHHHHHHH--HTSC-S
T ss_pred HHHHHHHHHHHHhcCCeEEEeCCeeccCCC--------CCCcCceecccc-CCcccccccC--HHHHHHHHH--hccc-C
Confidence 356788999997 69999999999986321 00112222 221 1233467777 344332211 0111 5
Q ss_pred eEEEeCcEeecCCCcccccccccEEEEEEeCCCCCHHHHHHHHHHHHHHh
Q 007706 474 KIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVI 523 (592)
Q Consensus 474 ~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~g~~~~f~~ikg~le~ll~~l 523 (592)
|+||||++|+.++.......|.+++-+=.+. +++.++-..+|.++..+
T Consensus 218 rvfqi~~~FR~E~~~t~r~pEFt~lE~e~af--~d~~d~m~~~E~l~~~~ 265 (617)
T 4ah6_A 218 RYFQVARCYRDEGSRPDRQPEFTQIDIEMSF--VDQTGIQSLIEGLLQYS 265 (617)
T ss_dssp EEEEEEEEECCCSSCSSSCSEEEEEEEEEES--CCHHHHHHHHHHHHHHH
T ss_pred cEEEEEhheecccCCCCcCcceecceeeecC--CCHHHHHHHHHHHHHHH
Confidence 8999999998654432333455566654454 48999999999999876
No 81
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=70.38 E-value=14 Score=39.58 Aligned_cols=109 Identities=12% Similarity=-0.046 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCceeeCCCcCCcccccccchHHHHHH-HHhccCCCCCee
Q 007706 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAVVGNPRTSDFEVVRTTLMPGILKT-IGHNKDHPKPIK 474 (592)
Q Consensus 396 ~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~vi~NP~s~e~~~lR~SLlpgLL~~-~~~N~~~~~~~~ 474 (592)
.++.+.+|+.|...||.||-|..|++..- ... ....-.|-.. ...+||.|- .|-.- +.. + --|
T Consensus 160 s~i~~~iR~ff~~~gF~EVeTPiL~~s~~-eGg-------~~~f~~~~~~-~~~~L~~Sp--qL~lq~l~~----g-~~r 223 (456)
T 3m4p_A 160 SEIQWYFRKYYHDNHFTEIQPPTIVKTQC-EGG-------STLFKLQYFN-EPAYLTQSS--QLYLESVIA----S-LGK 223 (456)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEEC--------------CCCCEEEETT-EEEEECSCC--HHHHHTTHH----H-HSS
T ss_pred HHHHHHHHHHHHhCCCEEEeCCeeecCCC-CCc-------cccccccccC-CCcccccCH--HHHHHHHHh----c-cCc
Confidence 45778899999999999999999976531 000 1111112111 112566553 22221 111 1 157
Q ss_pred EEEeCcEeecCCCc-ccccccccEEEEEEeCCCCCHHHHHHHHHHHHHH
Q 007706 475 IYEVGDVVLLDEKK-DVGASCRRRLAALYCGANSGFELIHCLVDRIMEV 522 (592)
Q Consensus 475 lFEiG~V~~~~~~~-~~~~~~~~~l~~~~~g~~~~f~~ikg~le~ll~~ 522 (592)
+||||++|+.++.. ..+..|.+++-+=.+.. ++.++-.++|.++..
T Consensus 224 Vyeig~~FR~E~~~t~rH~pEFtmlE~e~af~--d~~d~m~~~E~li~~ 270 (456)
T 3m4p_A 224 SFCMLSSYRAEQSRTVRHLAEYLHLEAELPFI--SFEDLLNHLEDLVCT 270 (456)
T ss_dssp EEEEEEEECCCSCCCSSCCSEEEEEEEEEESC--CHHHHHHHHHHHHHH
T ss_pred EEEEEhheecCCCCCCcchHHHHHhHHHHhcC--CHHHHHHHHHHHHHH
Confidence 99999999865432 23444666666655553 688877766666543
No 82
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=58.87 E-value=12 Score=39.50 Aligned_cols=80 Identities=8% Similarity=0.086 Sum_probs=54.0
Q ss_pred eeccccCCCeEEEecCCCceEEEeCCCcccCChhHHHhhhccccccccccccccCCCceeEEEeCCCCeeecCCcccCCc
Q 007706 164 HDLDTLQGPFTYEALPPSHINFVPLKQTRDFTADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNRTVLSLPPIINGAH 243 (592)
Q Consensus 164 ~Dld~i~~p~~y~~~~~~~i~f~~L~~~~~~~~~el~~l~~~~~~l~~y~~i~~~~~~~~vI~D~~~~vlslagIigg~~ 243 (592)
+|++++..|+..+...+++ .|. ++.......++++. +.+.... ..+..|+|++++ ++++++|+--+..
T Consensus 348 ~~~~~~~~~l~vR~r~~Gd-~~~-~g~~g~kklk~~~~----d~kiP~~-----~R~~~pll~~~~-~ii~v~g~~~~~~ 415 (433)
T 1ni5_A 348 IRPPRADEAVSVRFKAPGL-LHI-VGRNGGRKLKKIWQ----ELGVPPW-----LRDTTPLLFYGE-TLIAAAGVFVTQE 415 (433)
T ss_dssp ECCCCTTSCEEEESCCCSE-ECB-TTCSSCEEHHHHHH----HHTCCGG-----GTTSSCEEEETT-EEEEETTTEEBGG
T ss_pred cCcccCCCCEEEEecCCCc-Eee-cCCCCCchHHHHHH----HcCCCHH-----HHCCeeEEEECC-EEEEEeceeecce
Confidence 7888888898888777765 343 55432233444443 4444432 234679999876 6999999988888
Q ss_pred ceeecCCeEEEEE
Q 007706 244 SAITLKTKNVFIE 256 (592)
Q Consensus 244 s~It~~T~nI~iE 256 (592)
.+++++|+ +-|+
T Consensus 416 ~~~~~~~~-~~i~ 427 (433)
T 1ni5_A 416 GVAEGENG-VSFV 427 (433)
T ss_dssp GBCSSSCC-EEEE
T ss_pred eccCCCCc-eEEE
Confidence 89999877 4443
No 83
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=25.67 E-value=83 Score=33.48 Aligned_cols=79 Identities=10% Similarity=0.047 Sum_probs=51.3
Q ss_pred ccccccchHHHHHHHHhccC--C-CCCeeEEEeCcEeecCCC--c-ccc---cccccEEEE-EEeCCC---CCHHHHHHH
Q 007706 449 EVVRTTLMPGILKTIGHNKD--H-PKPIKIYEVGDVVLLDEK--K-DVG---ASCRRRLAA-LYCGAN---SGFELIHCL 515 (592)
Q Consensus 449 ~~lR~SLlpgLL~~~~~N~~--~-~~~~~lFEiG~V~~~~~~--~-~~~---~~~~~~l~~-~~~g~~---~~f~~ikg~ 515 (592)
-+|||...||.+-...+.++ + ..|+++.++|.+|..... + ..| .++....-+ .++.+. ..|......
T Consensus 147 ~~LRPeTaqg~~~nfk~~~~s~r~~LP~~iaqig~~FR~E~g~~~~~~GL~RvrEFtq~E~~~F~~Pe~~~e~~~~~~~~ 226 (459)
T 3ikl_A 147 GGLRENLLHGALEHYVNCLDLVNKRLPYGLAQIGVCFHPVFDTKQIRNGVKSIGEKTEASLVWFTPPRTSNQWLDFWLRH 226 (459)
T ss_dssp TB-CSCSHHHHHHHTTTTTGGGTTBSSEEEEEEEEEECCC----------CCCCEEEEEEEEEEECGGGHHHHHHHHHHH
T ss_pred ceECCCCChhHHHHHhhhhhhccccCCeEEEEEeeeeecccccccCCCCcccccceeeeeEEEEeChhHHHHHHHHHHHH
Confidence 59999999999998776654 3 469999999999987531 1 111 244443333 234432 235667777
Q ss_pred HHHHHHHhCCCC
Q 007706 516 VDRIMEVIGTPF 527 (592)
Q Consensus 516 le~ll~~lgi~~ 527 (592)
.+.++..||++.
T Consensus 227 ~~~~~~~LGi~~ 238 (459)
T 3ikl_A 227 RLQWWRKFAMSP 238 (459)
T ss_dssp HHHHHHHHCSSG
T ss_pred HHHHHHHhCCCh
Confidence 788889999963
No 84
>1suy_C CIIABD, circadian clock protein KAIC; X-class four helix bundle, protein-peptide complex, circadia protein; NMR {Thermosynechococcus elongatus} PDB: 1sv1_C
Probab=25.09 E-value=27 Score=22.14 Aligned_cols=18 Identities=28% Similarity=0.545 Sum_probs=14.7
Q ss_pred ecCCcccCCcceeecCCe
Q 007706 234 SLPPIINGAHSAITLKTK 251 (592)
Q Consensus 234 slagIigg~~s~It~~T~ 251 (592)
++||||.|.-|+|+.+-+
T Consensus 1 amagiisgtptrisvdek 18 (34)
T 1suy_C 1 AMAGIISGTPTRISVDEK 18 (34)
T ss_dssp CCSCCCCCCSSCSCCCTT
T ss_pred CccccccCCCceEeechh
Confidence 579999999998876654
No 85
>3fn2_A Putative sensor histidine kinase domain; GUT microbiome, structural genomics protein structure initiative; HET: MSE; 1.90A {Clostridium symbiosum atcc 14940}
Probab=24.43 E-value=69 Score=26.67 Aligned_cols=25 Identities=12% Similarity=0.093 Sum_probs=19.6
Q ss_pred ceeEEEeCCCCeeecCCcccCCcce
Q 007706 221 LYPVLYDQNRTVLSLPPIINGAHSA 245 (592)
Q Consensus 221 ~~~vI~D~~~~vlslagIigg~~s~ 245 (592)
.+++|+|+.|.++.-|++.-+.+++
T Consensus 50 ~~lrI~D~~G~vi~~~~~~a~~~~~ 74 (106)
T 3fn2_A 50 GYVRITDKDGQVITYEDGSVQDKTV 74 (106)
T ss_dssp CEEEEECTTSCBCSCCCSCSTTEEE
T ss_pred CcEEEEcCCCCEEecCCCCcCccee
Confidence 4699999999988888877655543
No 86
>1whz_A Hypothetical protein; alpha and beta protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.52A {Thermus thermophilus} SCOP: d.50.3.2
Probab=23.33 E-value=1.9e+02 Score=21.70 Aligned_cols=53 Identities=19% Similarity=0.217 Sum_probs=31.5
Q ss_pred cCCHHHHHHHHHhcCCeEEEcCCCCCcce------EEEEcCCCCcccCCCchhHhHHHHHhCC
Q 007706 323 SLEAEEVTSLLNRMQLHAERSASGNNQWN------INVLVPPTRSDVLHPCDVMEDVAIAYGY 379 (592)
Q Consensus 323 ~l~~~~i~~~L~~lg~~~~~~~~~~~~~~------~~V~vP~~R~DI~~~~DliEEIar~yGy 379 (592)
.++..|+.++|++.||......+ +... -.++||..+.| ...-++.-|.+-.|.
T Consensus 4 p~~~~elik~L~~~G~~~~r~~G--SH~~~~~~~~~~~~vP~h~~e--i~~g~lk~Ilkqagl 62 (70)
T 1whz_A 4 PPRPEEVARKLRRLGFVERMAKG--GHRLYTHPDGRIVVVPFHSGE--LPKGTFKRILRDAGL 62 (70)
T ss_dssp CCCHHHHHHHHHHTTCEEEEEET--TEEEEECTTSCEEEEECSSSS--CCHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHCCCEEeCCCC--CCceEecCCCCeeEecCCcCc--CCHHHHHHHHHHcCC
Confidence 46789999999999998653321 1200 14666655443 344455555555554
Done!