Query 007708
Match_columns 592
No_of_seqs 198 out of 826
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 08:31:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007708.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007708hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gia_A Uncharacterized protein 96.2 0.034 1.2E-06 58.0 12.8 77 4-92 127-208 (444)
2 4djk_A Probable glutamate/gamm 95.8 0.34 1.2E-05 51.4 18.3 96 4-106 132-237 (511)
3 3l1l_A Arginine/agmatine antip 94.9 0.34 1.2E-05 50.3 14.1 78 5-91 128-210 (445)
4 3bwz_A Cellulosomal scaffoldin 27.3 17 0.00058 34.6 0.8 7 442-448 110-116 (181)
5 2l6p_A PHAC1, PHAC2 and PHAD g 26.9 24 0.00083 31.5 1.7 21 562-584 30-50 (124)
6 3luu_A Uncharacterized protein 22.3 31 0.001 29.4 1.4 17 561-577 34-50 (101)
7 2l6n_A Uncharacterized protein 20.6 38 0.0013 30.6 1.7 15 562-576 37-51 (132)
8 1nrp_R Receptor based peptide 16.8 44 0.0015 21.8 0.8 16 124-139 5-20 (26)
9 2jln_A MHP1; hydantoin, transp 15.8 5.7E+02 0.019 27.2 9.9 294 3-338 144-482 (501)
10 3l8q_A Cellulosomal scaffoldin 15.4 42 0.0014 34.8 0.8 13 48-60 209-221 (350)
No 1
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=96.24 E-value=0.034 Score=57.99 Aligned_cols=77 Identities=19% Similarity=0.186 Sum_probs=43.1
Q ss_pred hhHHHHHHHHHhhccccccchhh---hhhhHHHHHHHHHHHhhHHhhcccCcceeee-cChHHHHHHHHhcCccc-eeec
Q 007708 4 FLACLVLIGHFVLQYRGTHRVAF---MFAPVVILWLLSTTGIGIYNVIKWNPRVYQA-LSPYYIYKFFKYTGRDG-WTSL 78 (592)
Q Consensus 4 ~is~~ILv~LF~~Q~~GT~kvg~---~F~Pim~vWf~~i~~~Giyni~~~~p~Vl~A-~nP~y~i~f~~~~~~~g-~~~L 78 (592)
.+++++++++..+.-+|+...++ .+..+.++=++.+.+.|+.+. +|+-+.. ++|. +..| +..+
T Consensus 127 ~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~ii~~~~~~---~~~~~~~~~~~~---------g~~~~~~~~ 194 (444)
T 3gia_A 127 ITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAGLITI---HPSYVIPDLAPS---------AVSGMIFAS 194 (444)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CGGGTSCCCSHH---------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---ChhhcCCCCCCc---------chHHHHHHH
Confidence 35677777888888888776654 445554544455555565543 4443221 2332 1111 2234
Q ss_pred cceeeeccchhhhh
Q 007708 79 AGLFLCTTGSEAMF 92 (592)
Q Consensus 79 G~v~L~iTG~EALy 92 (592)
...+.+.+|-|+.-
T Consensus 195 ~~~~~a~~G~e~~~ 208 (444)
T 3gia_A 195 AIFFLSYMGFGVIT 208 (444)
T ss_dssp HHGGGGGTHHHHHH
T ss_pred HHHHHHHHhHHHHH
Confidence 44567889999763
No 2
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=95.83 E-value=0.34 Score=51.37 Aligned_cols=96 Identities=16% Similarity=0.185 Sum_probs=51.8
Q ss_pred hhHHHHHHHHHhhccccccchhhhhhhH----HHHHHHHHHHhhHHhhcccCccee----eecChHHHHHHHHhcCccce
Q 007708 4 FLACLVLIGHFVLQYRGTHRVAFMFAPV----VILWLLSTTGIGIYNVIKWNPRVY----QALSPYYIYKFFKYTGRDGW 75 (592)
Q Consensus 4 ~is~~ILv~LF~~Q~~GT~kvg~~F~Pi----m~vWf~~i~~~Giyni~~~~p~Vl----~A~nP~y~i~f~~~~~~~g~ 75 (592)
.+++++++++..+--+|....+++..-. +++-++.+.++|++.+...+|.-+ ..+.|.. .+..+|
T Consensus 132 ~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 204 (511)
T 4djk_A 132 IAALIILWALALTQFGGTKYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDF-------SKVGTL 204 (511)
T ss_dssp HHHHHHHHHHHHHHHTCSSSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC------------CCCCCT-------TSTTTT
T ss_pred HHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCc-------ccchHH
Confidence 4567778888888889988777654332 222344555667766554333211 1122211 123456
Q ss_pred eeccceeeeccchhhhhhccCCCC--ccceeee
Q 007708 76 TSLAGLFLCTTGSEAMFADLGQFT--AGSIKLA 106 (592)
Q Consensus 76 ~~LG~v~L~iTG~EALyADlGHFg--~~~I~~a 106 (592)
..+..++.+.+|-|+.-.=-+-.- +|.+..|
T Consensus 205 ~~~~~~~~a~~G~e~~~~~a~E~k~P~k~ip~a 237 (511)
T 4djk_A 205 VVFVAFILSYMGVEASATHVNEMSNPGRDYPLA 237 (511)
T ss_dssp TTHHHHHHHHTTGGGGTGGGSSSSCCTTTHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHhccCcccchhHH
Confidence 667788899999998644333332 3444444
No 3
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=94.87 E-value=0.34 Score=50.33 Aligned_cols=78 Identities=13% Similarity=0.123 Sum_probs=37.5
Q ss_pred hHHHHHHHHHhhccccccchhhh---hhhHHHHHHHHHHHhhHHhhcccCccee-eecChHHHHHHHHhcCccc-eeecc
Q 007708 5 LACLVLIGHFVLQYRGTHRVAFM---FAPVVILWLLSTTGIGIYNVIKWNPRVY-QALSPYYIYKFFKYTGRDG-WTSLA 79 (592)
Q Consensus 5 is~~ILv~LF~~Q~~GT~kvg~~---F~Pim~vWf~~i~~~Giyni~~~~p~Vl-~A~nP~y~i~f~~~~~~~g-~~~LG 79 (592)
+++++++++..+--+|....+++ +.++.++=++.+.+.|+ ...+|+.+ ..++|.-. .+..+ +..+.
T Consensus 128 ~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~---~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 198 (445)
T 3l1l_A 128 TCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGW---FWFRGETYMAAWNVSGL------GTFGAIQSTLN 198 (445)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTS---TTCCCCCCCCC-----------------HHHHHH
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhChhhcccccCccCC------ccHHHHHHHHH
Confidence 45666677777888887776655 44444333333333443 33355543 23444210 00111 22344
Q ss_pred ceeeeccchhhh
Q 007708 80 GLFLCTTGSEAM 91 (592)
Q Consensus 80 ~v~L~iTG~EAL 91 (592)
..+.+.+|-|+.
T Consensus 199 ~~~~af~G~e~~ 210 (445)
T 3l1l_A 199 VTLWSFIGVESA 210 (445)
T ss_dssp HHHHTTTTTTHH
T ss_pred HHHHHHHhHHHH
Confidence 456778898865
No 4
>3bwz_A Cellulosomal scaffoldin adaptor protein B; cohesins II, cellulosome, structural protein; 1.20A {Acetivibrio cellulolyticus} PDB: 3f2l_A 1qzn_A 1zv9_A*
Probab=27.27 E-value=17 Score=34.60 Aligned_cols=7 Identities=57% Similarity=0.672 Sum_probs=2.9
Q ss_pred CCcceee
Q 007708 442 DGWLAVV 448 (592)
Q Consensus 442 ~~~~~~~ 448 (592)
.|...++
T Consensus 110 tG~iavI 116 (181)
T 3bwz_A 110 TGTVAVV 116 (181)
T ss_dssp SEEEEEE
T ss_pred ceeEEEE
Confidence 3444444
No 5
>2l6p_A PHAC1, PHAC2 and PHAD genes; DUF971, structural genomics, PSI-biology, protein structure initiative, joint center for structural genomics; NMR {Pseudomonas aeruginosa}
Probab=26.87 E-value=24 Score=31.45 Aligned_cols=21 Identities=29% Similarity=0.191 Sum_probs=14.9
Q ss_pred HHHHHhhcCCCCcccccCCCCeE
Q 007708 562 YSFLRKNSRSPAVFLNIPHICLI 584 (592)
Q Consensus 562 Y~FLRkNcR~~~~~L~IPh~~Ll 584 (592)
|.|||.||+++...-. .++++
T Consensus 30 ~~wLRd~Cpcaec~~~--~qr~l 50 (124)
T 2l6p_A 30 AEFLRVHSPSAEVQGH--GNPVL 50 (124)
T ss_dssp HHHHHHTCCCSSCCSC--CCCCC
T ss_pred HHHHHhcCCCcccCCC--Ccccc
Confidence 5899999999865543 44444
No 6
>3luu_A Uncharacterized protein; AFE_2189, PFAM DUF971 family, structural genomics, joint CEN structural genomics, JCSG; HET: MSE; 1.93A {Acidithiobacillus ferrooxidans}
Probab=22.34 E-value=31 Score=29.37 Aligned_cols=17 Identities=12% Similarity=0.135 Sum_probs=10.4
Q ss_pred HHHHHHhhcCCCCcccc
Q 007708 561 AYSFLRKNSRSPAVFLN 577 (592)
Q Consensus 561 ~Y~FLRkNcR~~~~~L~ 577 (592)
=|.|||.||+.+...-.
T Consensus 34 ~~~wLRd~c~ca~c~~~ 50 (101)
T 3luu_A 34 TFEHLRVECPCAECKGH 50 (101)
T ss_dssp EHHHHHHTCCCC-----
T ss_pred CHHHHHhhCCChhhcCc
Confidence 37899999997765443
No 7
>2l6n_A Uncharacterized protein YP_001092504.1; PJ06155C, DUF971, structural genomics, PSI-biology, protein initiative; NMR {Shewanella loihica}
Probab=20.62 E-value=38 Score=30.61 Aligned_cols=15 Identities=33% Similarity=0.224 Sum_probs=12.1
Q ss_pred HHHHHhhcCCCCccc
Q 007708 562 YSFLRKNSRSPAVFL 576 (592)
Q Consensus 562 Y~FLRkNcR~~~~~L 576 (592)
|.|||.||+.+...-
T Consensus 37 ~~wLRd~Cpcaec~~ 51 (132)
T 2l6n_A 37 CELLRVYSPSAEVHG 51 (132)
T ss_dssp HHHHHHSCSCSSSSS
T ss_pred HHHHHhcCCCcccCC
Confidence 689999999876543
No 8
>1nrp_R Receptor based peptide NR'S; serine proteinase/receptor; 3.00A {Homo sapiens} PDB: 1nrn_R 1nrq_R*
Probab=16.76 E-value=44 Score=21.80 Aligned_cols=16 Identities=25% Similarity=0.285 Sum_probs=0.0
Q ss_pred hhhccccccccCcccc
Q 007708 124 AFLSKNFSAAPLSFHA 139 (592)
Q Consensus 124 A~ll~~p~~~~npFf~ 139 (592)
++|++||++.-.||+.
T Consensus 5 sfllrnpndkyepfwe 20 (26)
T 1nrp_R 5 SFLLRNPNDKYEPFWE 20 (26)
T ss_pred hhhhcCCCcccCcccc
No 9
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=15.78 E-value=5.7e+02 Score=27.25 Aligned_cols=294 Identities=10% Similarity=0.012 Sum_probs=0.0
Q ss_pred ehhHHHHHHHHHhhccccccchhhhhhhHHHHHHHHHHHhhHHhhcccCc--ceeeecChHHHHHHHHhcCccceeeccc
Q 007708 3 VFLACLVLIGHFVLQYRGTHRVAFMFAPVVILWLLSTTGIGIYNVIKWNP--RVYQALSPYYIYKFFKYTGRDGWTSLAG 80 (592)
Q Consensus 3 v~is~~ILv~LF~~Q~~GT~kvg~~F~Pim~vWf~~i~~~Giyni~~~~p--~Vl~A~nP~y~i~f~~~~~~~g~~~LG~ 80 (592)
+.+.+..++.+... -+|-+++-++..=...+.++....+-++-+.+.+. +-+.+..|. ..+|-.+.+
T Consensus 144 v~~~i~~~l~~~~~-~~G~~~i~~~~~~~~p~~~i~~i~~~~~~l~~~g~~~~~~~~~~~~----------~~~~~f~~a 212 (501)
T 2jln_A 144 LWIVIFGAIQVVTT-FYGITFIRWMNVFASPVLLAMGVYMVYLMLDGADVSLGEVMSMGGE----------NPGMPFSTA 212 (501)
T ss_dssp HHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTCCCS----------SCCSCHHHH
T ss_pred HHHHHHHHHHHHHH-HhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhccCCc----------cchHHHHHH
Q ss_pred eeeeccchhhh---hhccCCCCcccee---------------eehhhhhhhHHHHhhcccchhhccccccccCccccccc
Q 007708 81 LFLCTTGSEAM---FADLGQFTAGSIK---------------LAFCCIVFPCLVLQYMGQAAFLSKNFSAAPLSFHASIP 142 (592)
Q Consensus 81 v~L~iTG~EAL---yADlGHFg~~~I~---------------~aw~~~V~P~L~L~Y~GQ~A~ll~~p~~~~npFf~~~P 142 (592)
+.+++...=++ -+|.+-+.|++-. -+++....|.++..-+|=..-......+..+-.-...+
T Consensus 213 i~~~~~~~~~~~~~~~DysRy~~~~~~~~~~~~~~~~~~~~~g~~lG~~i~~~~~~~lG~~~~~~~~~~dp~~~l~~~l~ 292 (501)
T 2jln_A 213 IMIFVGGWIAVVVSIHDIVKECKVDPNASREGQTKADARYATAQWLGMVPASIIFGFIGAASMVLVGEWNPVIAITEVVG 292 (501)
T ss_dssp HHHHHTTTHHHHTTTHHHHTTBCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccCcccccCCCCccccccchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHHhc
Q ss_pred Ccch-HHHHH-HHHHHHHHhhhhhhhhhhhhHHHHHHcCCCCcceEEecCCccCCcccchhhHHHHHHHhhheeEEecCc
Q 007708 143 DPLR-WPVLV-VATLAAIVASQSVISATFSTVKQCYALGCFPRVKVVHKARWVRGQVYIPEINWVLMILSLAVTVGFRDT 220 (592)
Q Consensus 143 ~~~~-~P~~v-lAtlAaIIASQA~Isg~FSi~~Qa~~Lg~fPr~ki~hTS~~~~GQIYIP~vNw~Lmi~~i~vv~~F~~s 220 (592)
.+.. -.... +..+.+.+++..+- ..+|......++ +||. +|.--+.+.++++.+++..=.+
T Consensus 293 ~~~~~~~~~~~~~~~la~i~tn~~~-n~ys~~~~l~~~--~~~~--------------i~~~~~~~i~~vi~~~i~~~~~ 355 (501)
T 2jln_A 293 GVSIPMAILFQVFVLLATWSTNPAA-NLLSPAYTLCST--FPRV--------------FTFKTGVIVSAVVGLLMMPWQF 355 (501)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTHHHH-HTHHHHHHHHHH--STTT--------------CCHHHHHHHHHHHHHHTCGGGT
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHh--Cccc--------------cchhHHHHHHHHHHHHHHHHHh
Q ss_pred -hhHHHhhhhhhhhHHHHHHHHHHHHHHHH---------------------hhhhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 007708 221 -NRLANAYGSACMALTFVSTLLTSLVIYFV---------------------WNQSLFLALLYVLFFGSIEIIYLSSACMK 278 (592)
Q Consensus 221 -~~l~~AYGiaV~~~m~iTT~L~~~v~~~~---------------------w~~~~~~~~~~~~~f~~ie~~f~sa~l~K 278 (592)
+.+.+-=.+--....-++.+++.=..+.. |+|.-+.+.+.-......
T Consensus 356 ~~~f~~FL~~lg~~l~P~~gI~l~Dy~i~rr~~~~~~~l~~~~g~y~y~~g~n~~a~~a~~~G~~~~~~----------- 424 (501)
T 2jln_A 356 AGVLNTFLNLLASALGPLAGIMISDYFLVRRRRISLHDLYRTKGIYTYWRGVNWVALAVYAVALAVSFL----------- 424 (501)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHTTSTTCCCHHHHTBSSSTTCTBTTBCHHHHHHHHHHHHHHHT-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCChHHhhCCCCccccCCCCCHHHHHHHHHHHHHHHH-----------
Q ss_pred ccCCchHHHHHHHHHHHHHHHHHHhHHHH-HhhhhcCCCChHHHHHhccCCCCCccCCcEE
Q 007708 279 IPNGGWVALMFTTVFLAIMYVWHYGSRKR-YLYDLHNKVPMKWILAQGSSLGIVRVPGIGL 338 (592)
Q Consensus 279 ~~~GGW~pl~ia~i~~~iM~~W~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~rvpG~~v 338 (592)
++-++..++.++..+.|.--.-...+ .+.-.+...--+++.+......+..-||++.
T Consensus 425 ---~~~~~~~~g~~va~v~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (501)
T 2jln_A 425 ---TPDLMFVTGLIAALLLHIPAMRWVAKTFPLFSEAESRNEDYLRPIGPVAPADESATAN 482 (501)
T ss_dssp ---CGGGHHHHHHHHHHHHHHHHHHHHTTTSCSCCGGGGGHHHHHSCCC------------
T ss_pred ---HhhhHHHHHHHHHHHHHHHHHHhCchhhhhcccccccccchhccccCCCcccCCCccc
No 10
>3l8q_A Cellulosomal scaffoldin adaptor protein B; dockerin-binding module, protein-protein interactions, linke segment; HET: EDO; 1.57A {Acetivibrio cellulolyticus} PDB: 3fnk_A
Probab=15.37 E-value=42 Score=34.83 Aligned_cols=13 Identities=54% Similarity=1.017 Sum_probs=0.0
Q ss_pred cccCcceeeecCh
Q 007708 48 IKWNPRVYQALSP 60 (592)
Q Consensus 48 ~~~~p~Vl~A~nP 60 (592)
++|||+||+|+||
T Consensus 209 IKYDP~VLqaV~p 221 (350)
T 3l8q_A 209 IKYDPTVLQAVNP 221 (350)
T ss_dssp EECCTTTEEEECT
T ss_pred eeeChhHeeeccC
Done!