Query 007708
Match_columns 592
No_of_seqs 198 out of 826
Neff 5.1
Searched_HMMs 13730
Date Mon Mar 25 08:31:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007708.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/007708hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74h1 f.23.27.1 (H:3-29) Pet 24.1 26 0.0019 21.6 2.5 20 283-302 5-24 (27)
2 d2yvxa3 f.57.1.1 (A:276-448) M 21.7 21 0.0015 31.5 2.5 120 113-245 12-133 (173)
3 d1or7a2 a.177.1.1 (A:-1-111) S 15.3 42 0.003 26.2 2.7 24 550-573 73-96 (113)
4 d2h8pc1 f.14.1.1 (C:22-78) Pot 10.1 33 0.0024 25.0 0.4 39 114-154 16-54 (57)
5 d1iray2 b.1.1.4 (Y:102-204) Ty 9.3 85 0.0062 24.3 2.7 26 381-406 57-82 (103)
6 d1jl0a_ d.156.1.1 (A:) S-adeno 8.0 58 0.0042 31.4 1.3 25 518-542 124-148 (325)
7 d1f2qa2 b.1.1.4 (A:86-174) IgE 7.6 97 0.007 22.9 2.3 29 380-408 47-75 (89)
8 d2a65a1 f.54.1.1 (A:5-513) Na( 7.5 2.4E+02 0.018 27.5 6.0 86 229-314 347-435 (509)
9 d1cs6a3 b.1.1.4 (A:209-299) Ax 6.8 1.4E+02 0.01 21.6 3.0 41 362-402 35-75 (91)
10 d1krha2 c.25.1.2 (A:206-338) B 6.7 1.6E+02 0.012 23.0 3.5 41 165-205 17-57 (133)
No 1
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=24.10 E-value=26 Score=21.61 Aligned_cols=20 Identities=40% Similarity=0.813 Sum_probs=16.0
Q ss_pred chHHHHHHHHHHHHHHHHHH
Q 007708 283 GWVALMFTTVFLAIMYVWHY 302 (592)
Q Consensus 283 GW~pl~ia~i~~~iM~~W~~ 302 (592)
||+.++.-+.-..-|.+|-+
T Consensus 5 gwv~llvvftwsiamvvwgr 24 (27)
T d2e74h1 5 GWVALLVVFTWSIAMVVWGR 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred hHhHHHHHhhheeeeEEEcc
Confidence 78888887777788888854
No 2
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=21.65 E-value=21 Score=31.54 Aligned_cols=120 Identities=13% Similarity=0.110 Sum_probs=70.0
Q ss_pred hHHHHhhccc--chhhccccccccCcccccccCcchHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHcCCCCcceEEecC
Q 007708 113 PCLVLQYMGQ--AAFLSKNFSAAPLSFHASIPDPLRWPVLVVATLAAIVASQSVISATFSTVKQCYALGCFPRVKVVHKA 190 (592)
Q Consensus 113 P~L~L~Y~GQ--~A~ll~~p~~~~npFf~~~P~~~~~P~~vlAtlAaIIASQA~Isg~FSi~~Qa~~Lg~fPr~ki~hTS 190 (592)
|-|+++.+|+ +|+++.+-|+.-+-+-. =..+.|+ ++-++.-++||+. +++-+++++|-.-+-. .-
T Consensus 12 pWL~i~l~~~~~~a~ii~~Fe~~l~~~~~---La~fiPl--i~~~gGN~G~Qs~-----ti~iR~La~g~i~~~~---~~ 78 (173)
T d2yvxa3 12 RWLVILILTGMVTSSILQGFESVLEAVTA---LAFYVPV--LLGTGGNTGNQSA-----TLIIRALATRDLDLRD---WR 78 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTTTTTTS---CCCCSHH--HHHHHHHHHHHHH-----HHHHHHHHTTCSCSSS---HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH--HhcCCchHHHHHH-----HHHHHHHhcccccchh---HH
Confidence 4445555554 46666655543332211 1256666 6778888899987 4888999999643211 11
Q ss_pred CccCCcccchhhHHHHHHHhhheeEEecCchhHHHhhhhhhhhHHHHHHHHHHHH
Q 007708 191 RWVRGQVYIPEINWVLMILSLAVTVGFRDTNRLANAYGSACMALTFVSTLLTSLV 245 (592)
Q Consensus 191 ~~~~GQIYIP~vNw~Lmi~~i~vv~~F~~s~~l~~AYGiaV~~~m~iTT~L~~~v 245 (592)
+...-++.+-.+|=+.+...+.....+.+...++-+=|++...+|.+.+++=+++
T Consensus 79 ~~l~kE~~vgll~G~~l~~i~~~~~~~~~~~~l~~vi~~sl~~~~~ia~~~G~~l 133 (173)
T d2yvxa3 79 RVFLKEMGVGLLLGLTLSFLLVGKVYWDGHPLLLPVVGVSLVLIVFFANLVGAML 133 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233456777777766665555545455555566666666666666665554443
No 3
>d1or7a2 a.177.1.1 (A:-1-111) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]}
Probab=15.27 E-value=42 Score=26.20 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=21.2
Q ss_pred CChhHHHHHHHHHHHHHhhcCCCC
Q 007708 550 APFLKRFVINVAYSFLRKNSRSPA 573 (592)
Q Consensus 550 Ss~lKk~vIn~~Y~FLRkNcR~~~ 573 (592)
.+|+.+++-|.+.+++|++-|.+.
T Consensus 73 ~~wl~~I~~n~~~d~~R~~~r~~~ 96 (113)
T d1or7a2 73 YTWLYRIAVNTAKNYLVAQGRRPP 96 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCC
Confidence 467999999999999999998764
No 4
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=10.09 E-value=33 Score=25.00 Aligned_cols=39 Identities=23% Similarity=0.259 Sum_probs=25.5
Q ss_pred HHHHhhcccchhhccccccccCcccccccCcchHHHHHHHH
Q 007708 114 CLVLQYMGQAAFLSKNFSAAPLSFHASIPDPLRWPVLVVAT 154 (592)
Q Consensus 114 ~L~L~Y~GQ~A~ll~~p~~~~npFf~~~P~~~~~P~~vlAt 154 (592)
++++--++=+.|+.++.. .+.-|.++|+.+.|-.+-+.|
T Consensus 16 ~i~i~~~s~~~y~~E~~~--~~~~f~sip~a~WWaivT~TT 54 (57)
T d2h8pc1 16 VIVLLAGSYLAVLAERGA--PGAQLITYPRALWWACETATT 54 (57)
T ss_dssp HHHHHHHHHHHHHHHTTS--TTCCCCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcCC--CCccccccchhhhhheeeeec
Confidence 444444556667777644 344599999999997765543
No 5
>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.28 E-value=85 Score=24.26 Aligned_cols=26 Identities=23% Similarity=0.442 Sum_probs=21.1
Q ss_pred CceEEEEeecCCCCcEEEEEEEeeec
Q 007708 381 KERYLIGRIGPKSYRMYRCIVRNGYK 406 (592)
Q Consensus 381 ~eR~~v~~l~~~~~~~yR~vvryGY~ 406 (592)
+....+..+...+.|.|+|++++.|.
T Consensus 57 ~~~L~I~~v~~~D~G~Y~C~a~n~~~ 82 (103)
T d1iray2 57 KDRLIVMNVAEKHRGNYTCHASYTYL 82 (103)
T ss_dssp TTEEEESSCCGGGCEEEEEEEEEEET
T ss_pred CCEEEEcccccccCcEEEEEEEECcC
Confidence 45677888888888999999988664
No 6
>d1jl0a_ d.156.1.1 (A:) S-adenosylmethionine decarboxylase {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.96 E-value=58 Score=31.39 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHHHhcCcEEEeeec
Q 007708 518 LRVKEELLQLLEAKCAGVSYIIGHS 542 (592)
Q Consensus 518 ~~v~eEl~~L~~A~eaGVvYIlG~~ 542 (592)
.+.+||.+.|++....|..|++|+-
T Consensus 124 ~sf~~Ev~~L~~~f~~G~aY~~G~~ 148 (325)
T d1jl0a_ 124 RNFQEEIEFLNAIFPNGAGYCMGRM 148 (325)
T ss_dssp SSHHHHHHHHHTTCSSEEEEEESCT
T ss_pred CCHHHHHHHHHHhCCCCceEEecCC
Confidence 5689999999999999999999974
No 7
>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.61 E-value=97 Score=22.86 Aligned_cols=29 Identities=14% Similarity=0.079 Sum_probs=23.1
Q ss_pred CCceEEEEeecCCCCcEEEEEEEeeeccc
Q 007708 380 HKERYLIGRIGPKSYRMYRCIVRNGYKDV 408 (592)
Q Consensus 380 ~~eR~~v~~l~~~~~~~yR~vvryGY~d~ 408 (592)
...++.+..+...+-|.|+|.++.++.+.
T Consensus 47 ~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~ 75 (89)
T d1f2qa2 47 ENHNISITNATVEDSGTYYCTGKVWQLDY 75 (89)
T ss_dssp CSSEEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred ccceEEEeeeeeecCcEEEEEEEeCCCCe
Confidence 45668888888888899999999876543
No 8
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=7.51 E-value=2.4e+02 Score=27.45 Aligned_cols=86 Identities=9% Similarity=0.179 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHHHHhhccccC--CchHHHHHHHHHHHHHHHHHHhHH
Q 007708 229 SACMALTFVSTLLTSLVI-YFVWNQSLFLALLYVLFFGSIEIIYLSSACMKIPN--GGWVALMFTTVFLAIMYVWHYGSR 305 (592)
Q Consensus 229 iaV~~~m~iTT~L~~~v~-~~~w~~~~~~~~~~~~~f~~ie~~f~sa~l~K~~~--GGW~pl~ia~i~~~iM~~W~~G~~ 305 (592)
.+.+....+.-..++.+. ..-|+++....+...+.++..=..+++.......| .+=+.+.+.+.+..+...|.||.+
T Consensus 347 ~gl~s~i~~~e~~v~~l~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~l~e~i~v~w~yg~~ 426 (509)
T d2a65a1 347 AGLTSSIAIMQPMIAFLEDELKLSRKHAVLWTAAIVFFSAHLVMFLNKSLDEMDFWAGTIGVVFFGLTELIIFFWIFGAD 426 (509)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHBTTHHHHHHHHTTTHHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHhccccchhHHHHHhcCCchhhhhhheeEEEEhhhhHHHHhcchHHHHHHHHHHHHHHHHHHHHHheeeeEecHH
Q ss_pred HHHhhhhcC
Q 007708 306 KRYLYDLHN 314 (592)
Q Consensus 306 ~~~~~~~~~ 314 (592)
+..+...+.
T Consensus 427 r~~~di~~~ 435 (509)
T d2a65a1 427 KAWEEINRG 435 (509)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhC
No 9
>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=6.77 E-value=1.4e+02 Score=21.61 Aligned_cols=41 Identities=10% Similarity=0.041 Sum_probs=0.0
Q ss_pred ceEEEEEEEEEeeccccCCCceEEEEeecCCCCcEEEEEEE
Q 007708 362 YQVVVFICVKTVPLPYVHHKERYLIGRIGPKSYRMYRCIVR 402 (592)
Q Consensus 362 he~~vfv~i~~~~vP~V~~~eR~~v~~l~~~~~~~yR~vvr 402 (592)
.++.|+-.=......+...+....+..+...+.|.|+|++.
T Consensus 35 p~i~W~k~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 75 (91)
T d1cs6a3 35 PQIKWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAE 75 (91)
T ss_dssp CEEEEEECCSCCSCCCSBSSSEEEECSCCGGGCEEEEEEEE
T ss_pred CEEEEEecccccceEeeeeeeEEEeCCCCccCCEEEEEEEE
No 10
>d1krha2 c.25.1.2 (A:206-338) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]}
Probab=6.73 E-value=1.6e+02 Score=23.02 Aligned_cols=41 Identities=15% Similarity=0.100 Sum_probs=0.0
Q ss_pred hhhhhhhHHHHHHcCCCCcceEEecCCccCCcccchhhHHH
Q 007708 165 ISATFSTVKQCYALGCFPRVKVVHKARWVRGQVYIPEINWV 205 (592)
Q Consensus 165 Isg~FSi~~Qa~~Lg~fPr~ki~hTS~~~~GQIYIP~vNw~ 205 (592)
||-..|+++++.+.+.-+++.++|..+....-+|--++..+
T Consensus 17 ItP~~s~l~~~~~~~~~~~i~l~~~~r~~~d~~~~~el~~l 57 (133)
T d1krha2 17 IAPFLSMLQVLEQKGSEHPVRLVFGVTQDCDLVALEQLDAL 57 (133)
T ss_dssp HHHHHHHHHHHHHHCCSSCEEEEEEESSGGGCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCceEEEEeecchhHHHHHHHHHHH
Done!