RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 007710
(592 letters)
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation,
tRNA-binding, DNA-binding domain, four-helix
acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A
{Homo sapiens}
Length = 589
Score = 669 bits (1729), Expect = 0.0
Identities = 301/596 (50%), Positives = 412/596 (69%), Gaps = 11/596 (1%)
Query: 1 MPTVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDE 60
MPTVSV RD LF ALG++YT EEF++LCF FG+ELD++T+EK II KE+ + +D
Sbjct: 1 MPTVSVKRDLLFQALGRTYTDEEFDELCFEFGLELDEITSEKEIISKEQGNVKAAGASDV 60
Query: 61 EVIYKIEVPANRYDLLCLEGIAQALRVFNKQQEIPKYTLSDVSKDSMLQMHVKPETSSIR 120
V+YKI+VPANRYDLLCLEG+ + L+VF ++ + P Y + + ++ + ET+ IR
Sbjct: 61 -VLYKIDVPANRYDLLCLEGLVRGLQVFKERIKAPVYKRV-MPDGKIQKLIITEETAKIR 118
Query: 121 PYVVCAVLRDISFDEASYNSFIDLQDKLHQNICRRRTLVAIGTHDLDTLQGPFTYEALPP 180
P+ V AVLR+I F + Y+SFI+LQ+KLHQNICR+R LVAIGTHDLDTL GPFTY A P
Sbjct: 119 PFAVAAVLRNIKFTKDRYDSFIELQEKLHQNICRKRALVAIGTHDLDTLSGPFTYTAKRP 178
Query: 181 SHINFVPLKQTRDFTADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNRTVLSLPPIIN 240
S I F PL +T+++TA ELM YK+D LK YLHIIEN PLYPV+YD N VLS+PPIIN
Sbjct: 179 SDIKFKPLNKTKEYTACELMNIYKTDNHLKHYLHIIENKPLYPVIYDSNGVVLSMPPIIN 238
Query: 241 GAHSAITLKTKNVFIECTATDLTKAKIVLNTMVTIFSEYCKRKYQVEPVEVVYADGRSYV 300
G HS IT+ T+N+FIECT TD TKAKIVL+ +VT+FSEYC+ ++ VE EVV+ +G+S+
Sbjct: 239 GDHSRITVNTRNIFIECTGTDFTKAKIVLDIIVTMFSEYCENQFTVEAAEVVFPNGKSHT 298
Query: 301 YPDLSAYNMEVSLSYINHTIGVSLEAEEVTSLLNRMQLHAERSASGNNQWNINVLVPPTR 360
+P+L+ V IN +G+ E + LL RM L +E G I + +PPTR
Sbjct: 299 FPELAYRKEMVRADLINKKVGIRETPENLAKLLTRMYLKSEVIGDG---NQIEIEIPPTR 355
Query: 361 SDVLHPCDVMEDVAIAYGYNNIPKRKPASV---KPLALNEFSDLMRLEIAMNGFTEVLTW 417
+D++H CD++ED AIAYGYNNI P + LN+ ++L+R ++A GFTE LT+
Sbjct: 356 ADIIHACDIVEDAAIAYGYNNIQMTLPKTYTIANQFPLNKLTELLRHDMAAAGFTEALTF 415
Query: 418 ILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIKIY 476
LCS ++I+ L + AV + NP+T++F+V RTTL+PG+LKTI N+ P P+K++
Sbjct: 416 ALCSQEDIADKLGVDISATKAVHISNPKTAEFQVARTTLLPGLLKTIAANRKMPLPLKLF 475
Query: 477 EVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVIGTPFVPVGDDTGY 536
E+ D+V+ D DVGA R L A+Y N GFE+IH L+DRIM+++ P P D GY
Sbjct: 476 EISDIVIKDSNTDVGAKNYRHLCAVYYNKNPGFEIIHGLLDRIMQLLDVP--PGEDKGGY 533
Query: 537 YIQRSDEPEFLPGRQASITHKGKHVGTFGIVHPEVLNNFDISDPCSFMEIDIENFL 592
I+ S+ P F PGR A I +G+ VG G++HP+V+ F+++ PCS +EI+I FL
Sbjct: 534 VIKASEGPAFFPGRCAEIFARGQSVGKLGVLHPDVITKFELTMPCSSLEINIGPFL 589
>2cxi_A Phenylalanyl-tRNA synthetase beta chain; aminoacyl-tRNA synthetase,
ligase, structural genomics; HET: MSE; 1.94A {Pyrococcus
horikoshii}
Length = 348
Score = 358 bits (920), Expect = e-120
Identities = 129/382 (33%), Positives = 191/382 (50%), Gaps = 37/382 (9%)
Query: 1 MPTVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDE 60
MP V + L +G+S++ EE+EDL ELDDV E +
Sbjct: 1 MPKFDVSKSDLERLIGRSFSIEEWEDLVLYAKCELDDVWEE-----------------NG 43
Query: 61 EVIYKIEVP-ANRYDLLCLEGIAQALRVF-NKQQEIPKYTLSDVSKDSMLQMHVKPETSS 118
+V +K++ NR DL EG+A+ ++ ++ +PKY + K S + ++V +
Sbjct: 44 KVYFKLDSKDTNRPDLWSAEGVARQIKWALGIEKGLPKYEV----KKSNVTVYVDEKLKD 99
Query: 119 IRPYVVCAVLRDISFDEASYNSFIDLQDKLHQNICRRRTLVAIGTHDLDTLQGPFTYEAL 178
IRPY V A++ + DE S + I LQ+K+ RRR VAIG D D ++ P Y+A
Sbjct: 100 IRPYGVYAIVEGLRLDEDSLSQMIQLQEKIALTFGRRRREVAIGIFDFDKIKPPIYYKAA 159
Query: 179 PPSHINFVPLKQTRDFTADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNRTVLSLPPI 238
+ F PL + T +E++E ++ K ++Y H+I++ YP+L D VLS+PPI
Sbjct: 160 EKT-EKFAPLGYKEEMTLEEILEKHE---KGREYGHLIKDKQFYPLLIDSEGNVLSMPPI 215
Query: 239 INGAHS-AITLKTKNVFIECTATDLTKAKIVLNTMVTIFSEYCKRKYQVEPVEVVYADGR 297
IN + +T TKNVFI+ T L K + LN MVT +E ++ V VVY D
Sbjct: 216 INSEFTGRVTTDTKNVFIDVTGWKLEKVMLALNVMVTALAERG---GKIRSVRVVYKDF- 271
Query: 298 SYVYPDLSAYNMEVSLSYINHTIGVSLEAEEVTSLLNRMQLHAERSASGNNQWNINVLVP 357
PDL+ EV L YI G+ L E+ LL +M E S + P
Sbjct: 272 EIETPDLTPKEFEVELDYIRKLSGLELNDGEIKELLEKMMYEVEISRG-----RAKLKYP 326
Query: 358 PTRSDVLHPCDVMEDVAIAYGY 379
R D++H D++EDV IAYGY
Sbjct: 327 AFRDDIMHARDILEDVLIAYGY 348
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation,
tRNA-binding, DNA-binding domain, four-helix
aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP;
3.02A {Escherichia coli}
Length = 795
Score = 170 bits (434), Expect = 2e-45
Identities = 76/394 (19%), Positives = 146/394 (37%), Gaps = 70/394 (17%)
Query: 241 GAHSAITLKTKNVFIEC----------TA----------------TDLTKAKIVLNTMVT 274
G HS + +T+NV +EC A D +
Sbjct: 319 GEHSGVNDETQNVLLECAFFSPLSITGRARRHGLHTDASHRYERGVDPALQHKAMERATR 378
Query: 275 IFSEYCKRKYQVEPVEVVYADGRSYVYPDLSAYNMEVSLSYINHTIGVSLEAEEVTSLLN 334
+ + C + PV + + + + S ++ IG + E+VT +L
Sbjct: 379 LLIDICGG--EAGPVIDITNEATLPKRATI-----TLRRSKLDRLIGHHIADEQVTDILR 431
Query: 335 RMQLHAERSASGNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYGYNNIPKRKP-ASVKPL 393
R+ + P R D+ D++E+VA YGYNNIP AS+
Sbjct: 432 RLGCEVTEGKDE-----WQAVAPSWRFDMEIEEDLVEEVARVYGYNNIPDEPVQASLIMG 486
Query: 394 ALNE---FSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAVVGNPRTSDFEV 450
E ++ + G+ EV+T+ K + ++ +P + +
Sbjct: 487 THREADLSLKRVKTLLNDKGYQEVITYSFVDPKVQQMIHP---GVEALLLPSPISVEMSA 543
Query: 451 VRTTLMPGILKTIGHNKDHPKP-IKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSG- 508
+R +L G+L T+ +N++ + ++I+E G + D + +G LA + CG
Sbjct: 544 MRLSLWTGLLATVVYNQNRQQNRVRIFESGLRFVPDTQAPLGIRQDLMLAGVICGNRYEE 603
Query: 509 -----------FEL--IHCLVDRIMEVIGTPFVPVGDDTGYYIQRSDEPEFLPGRQASIT 555
++L ++ ++++ G + P PG+ A+I
Sbjct: 604 HWNLAKETVDFYDLKGD---LESVLDLTGKL-------NEVEFRAEANPALHPGQSAAIY 653
Query: 556 HKGKHVGTFGIVHPEVLNNFDISDPCSFMEIDIE 589
KG+ +G G+VHPE+ D++ E++
Sbjct: 654 LKGERIGFVGVVHPELERKLDLNGRTLVFELEWN 687
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer,
phenylalanine, aminoacyl-tRNA synthetase, ATP-binding,
cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus
haemolyticus} PDB: 2rhs_B*
Length = 795
Score = 164 bits (418), Expect = 3e-43
Identities = 73/397 (18%), Positives = 147/397 (37%), Gaps = 73/397 (18%)
Query: 238 IINGAHSAITLKTKNVFIEC----------TA----------------TDLTKAKIVLNT 271
++ G S +T +T NV IE T+ ++
Sbjct: 320 VMGGDFSEVTEQTTNVVIEGAIFDPVSIRHTSRRLNLRSEASSRFEKGIATEFVDEAVDR 379
Query: 272 MVTIFSEYCKRKYQVEPVEVVYADGRSYVYPDLSA-YNMEVSLSYINHTIGVSLEAEEVT 330
+ E +V V S ++++ +N TIG +L +E+
Sbjct: 380 ACYLLQELASG--EVLQDRVS-------SGDLGSFVTPIDITAEKVNKTIGFNLSNDEIQ 430
Query: 331 SLLNRMQLHAERSASGNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYGYNNIPKRKP--A 388
S+ ++ + V VP R D+ D++E+VA YGY+ IP P
Sbjct: 431 SIFRQLGFETTLKGET-----LTVNVPSRRKDITIKEDLIEEVARIYGYDEIPSSLPVFG 485
Query: 389 SVKPLALNE---FSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAVVGNPRT 445
V L + + ++ + G + +T+ L S K+ + Q + +++ P +
Sbjct: 486 EVTSGELTDRQHKTRTLKETLEGAGLNQAITYSLVS-KDHAKDFALQERPTISLL-MPMS 543
Query: 446 SDFEVVRTTLMPGILKTIGHNKDH-PKPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCG 504
+R +L+P +++ +N K +++YE+G V + + ++ L+ + G
Sbjct: 544 EAHATLRQSLLPHLIEATAYNVARKNKDVRLYEIGRVFFGNGEGELPDE-VEYLSGILTG 602
Query: 505 ANSG------------FELIHCLVDRIMEVIGTPFVPVGDDTGYYIQRSDEPEFLPGRQA 552
F +VDR+ E + F + PGR A
Sbjct: 603 EYVVNAWQGKKEEIDFFIAKG-VVDRVAEKLNLEFS---------YKAGKIEGLHPGRTA 652
Query: 553 SITHKGKHVGTFGIVHPEVLNNFDISDPCSFMEIDIE 589
++ +G+ +G G +HP+V + D+ E++ +
Sbjct: 653 IVSLEGQDIGFIGELHPQVAADNDLKRTY-VFELNYD 688
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta
homodimer, ligase; HET: FYA; 2.50A {Thermus
thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1
d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B
2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
Length = 785
Score = 161 bits (410), Expect = 3e-42
Identities = 75/397 (18%), Positives = 125/397 (31%), Gaps = 81/397 (20%)
Query: 238 IINGAHSAITLKTKNVFIEC----------TA----------------TDLTKAKIVLNT 271
++ GA S + T+ + +E TA D
Sbjct: 316 VMGGAESEVREDTEAIALEVACFDPVSIRKTARRHGLRTEASHRFERGVDPLGQVPAQRR 375
Query: 272 MVTIFSEYCKRKYQVEPVEVVYADGRSYVYPDLSAYNMEVSLSYINHTIGVSLEAEEVTS 331
+++ E + + Y N +G S E +
Sbjct: 376 ALSLLQALA----GARVAEALLE-----AGSPKPPEAIPFRPEYANRLLGTSYPEAEQIA 426
Query: 332 LLNRMQLHAERSASGNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYGYNNIPKRKPASVK 391
+L R+ E V P R D+ D++E+VA GY IP PA
Sbjct: 427 ILKRLGCRVEGEGPT-----YRVTPPSHRLDLRLEEDLVEEVARIQGYETIPLALPAFFP 481
Query: 392 PLALNEFSDLMRLEIAM------NGFTEVLTWILCSSKEISTMLNRQTDESTAVVGNPRT 445
R E + GF EV T+ ++ + D ++ NP
Sbjct: 482 APDNRGVEAPYRKEQRLREVLSGLGFQEVYTYSFMDPEDARRF---RLDPPRLLLLNPLA 538
Query: 446 SDFEVVRTTLMPGILKTIGHNKDH--PKPIKIYEVGDVVLLDEKKDVGASCRRRLAALYC 503
+ +RT L PG+++ + N D P+ ++EVG V E LA L
Sbjct: 539 PEKAALRTHLFPGLVRVLKENLDLDRPERALLFEVGRVFRERE--------ETHLAGLLF 590
Query: 504 GANSG-----------FELIHCLVDRIMEVIGTPFVPVGDDTGYYIQRSDEPEFLPGRQA 552
G G F L ++ + +G F ++ P PG
Sbjct: 591 GEGVGLPWAKERLSGYFLLKG-YLEALFARLGLAF---------RVEAQAFPFLHPGVSG 640
Query: 553 SITHKGKHVGTFGIVHPEVLNNFDISDPCSFMEIDIE 589
+ +G+ VG G +HPE+ ++ F E+ +
Sbjct: 641 RVLVEGEEVGFLGALHPEIAQELELPPVHLF-ELRLP 676
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1,
phenylalanyl-tRNA SYNT beta subunit, structural
genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas
gingivalis}
Length = 213
Score = 106 bits (266), Expect = 2e-26
Identities = 45/210 (21%), Positives = 82/210 (39%), Gaps = 18/210 (8%)
Query: 397 EFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAVVGNPRTSDFEVVRTTLM 456
++ ++ ++ GF E+L L + L E + NP + + +R TL+
Sbjct: 8 KWQTVVSEQLVGAGFNEILNNSLTAGS-YYEGLKSHPREMAVELMNPLSQELNCMRQTLL 66
Query: 457 PGILKTIGHNKDHPKP-IKIYEVGDV------VLLDEKKDVGASCRRRLAALYCG--ANS 507
G L+T+ HN + ++E G DE + RL CG ++
Sbjct: 67 FGGLETLSHNLRRKHLSLYLFEWGKCYRFHAAKRTDETPLAAYAEDDRLGIWICGQRVHN 126
Query: 508 GFELIHCLVD-----RIMEVIGTPFVPVGDDTGYYIQRSDEPEFLPGRQASITHKGKHVG 562
+ ++E + VG +TG Y ++ + + T GK +G
Sbjct: 127 SWAHPEEPTSVFELKAVVEQV---LCRVGIETGAYTLKTADNDLYASAMEVKTRSGKLLG 183
Query: 563 TFGIVHPEVLNNFDISDPCSFMEIDIENFL 592
TFG V E++ F+I P F E+ + +
Sbjct: 184 TFGTVSTELIKRFEIEQPVYFAELLWDALM 213
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural
genomics, midwest center for structural GE protein
structure initiative; HET: MSE; 2.09A {Bacteroides
fragilis}
Length = 213
Score = 105 bits (263), Expect = 5e-26
Identities = 41/211 (19%), Positives = 81/211 (38%), Gaps = 18/211 (8%)
Query: 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAVVGNPRTSDFEVVRTTL 455
N+ +L+ ++ GF E+L L + L ++ ++ NP ++D +R TL
Sbjct: 7 NKLQNLVAEQLVGCGFNEILNNSLTRAA-YYDGLESYPSKNLVMLLNPLSADLNCMRQTL 65
Query: 456 MPGILKTIGHNKDHPKP-IKIYEVGDVVLLDEKKDVGASC------RRRLAALYCGANS- 507
+ G L++I HN + +K +E G+ D +K L G
Sbjct: 66 LFGGLESIAHNANRKNADLKFFEFGNCYHFDAEKKNPEKVLAPYSEDYHLGLWVTGKMVS 125
Query: 508 -GFELIHCLVD-----RIMEVIGTPFVPVGDDTGYYIQRSDEPEFLPGRQASITHKGKHV 561
+ +E I F +G D + + + T GK +
Sbjct: 126 NSWAHADENTSVYELKAYVENI---FKRLGLDLHSLVVGNLSDDIYSTALTVNTKGGKRL 182
Query: 562 GTFGIVHPEVLNNFDISDPCSFMEIDIENFL 592
TFG+V ++L FD+ + + +++ + +
Sbjct: 183 ATFGVVTKKMLKAFDVDNEVYYADLNWKELM 213
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 60.3 bits (145), Expect = 1e-09
Identities = 97/663 (14%), Positives = 171/663 (25%), Gaps = 245/663 (36%)
Query: 19 YTKEEFEDLCFCFGIELDDVTTEKAII-----RKEKHLD---EEGDENDEEVIY-KIEVP 69
+KEE + + + D V+ + ++E+ + EE + + + I+
Sbjct: 46 LSKEEIDHII----MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTE 101
Query: 70 ANRYDLLCLEGIAQALRVFNKQQEIPKYTLSDVSKDSMLQMHVKPETSSIRP--YVV--- 124
+ ++ I Q R++N Q KY +S + L+ + +RP V+
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL----ELRPAKNVLIDG 157
Query: 125 ---C-------AVLRDISFDE-----------ASYNSFIDLQDKLHQNICRRRTLVAIGT 163
V + NS + + L Q + +
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML-QKLLYQ-------- 208
Query: 164 HDLDTLQGPFTYEALPPSHINFVPLKQTRDFTADELMEFYKSDLKLKKYLHIIENSPLYP 223
+ +T + S+I K EL LK K Y EN L
Sbjct: 209 -----IDPNWTSRSDHSSNI-----KLRIHSIQAELRRL----LKSKPY----ENCLL-- 248
Query: 224 VLYD-QNRTVLSLPPIINGAHSAITLKTKNVF-IECTATDLTKAKIVLNTMVTIFSEYCK 281
VL + QN N F + C KI+L T
Sbjct: 249 VLLNVQNAKAW------------------NAFNLSC--------KILLTT---------- 272
Query: 282 RKYQVEPVEVVYADGRSYVYPDLS------AYNMEVSLSYINHTIGVSL--EAEEVTSLL 333
R QV + + A +++ D + L Y++ L E
Sbjct: 273 RFKQV--TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ-DLPREVLTTNPRR 329
Query: 334 NRMQLHAERSASGNNQWN-----------------INVLVPPTRSDVLHPCDVM-EDVAI 375
+ + AE G W+ +NVL P + V I
Sbjct: 330 --LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI 387
Query: 376 AYGYNNIPKRKPASVKPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDE 435
P + L + W ++ ++N
Sbjct: 388 -----------PTIL----------LSLI------------WFDVIKSDVMVVVN----- 409
Query: 436 STAVVGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIKIYEVGDVVL-LDEKKDVGASC 494
++ + +L+ K PK + + L L K + +
Sbjct: 410 -------------KLHKYSLV---------EKQ-PKE-STISIPSIYLELKVKLENEYAL 445
Query: 495 RRRLAALYCGANSGFELIHCLVDRIMEVIGTPFVPVGDDTGY---YI-------QRSDEP 544
R + Y F+ +P D Y +I + +
Sbjct: 446 HRSIVDHY-NIPKTFDSDD-------------LIPPYLD-QYFYSHIGHHLKNIEHPERM 490
Query: 545 EFLPGR-------QASITHKGKHVGTFGIVHPEVLNNFD-----ISDPCSFME---IDIE 589
+ I H G + L I D E I
Sbjct: 491 TLFRMVFLDFRFLEQKIRHDSTAWNASGSILN-TLQQLKFYKPYICDNDPKYERLVNAIL 549
Query: 590 NFL 592
+FL
Sbjct: 550 DFL 552
Score = 55.6 bits (133), Expect = 4e-08
Identities = 54/306 (17%), Positives = 89/306 (29%), Gaps = 85/306 (27%)
Query: 17 KSYTKEEFEDLCF-CFGIELDDVTTEK------------AIIRKE-------KHLDEEGD 56
+ T +E + L D+ E IR KH++ +
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL 355
Query: 57 ENDEEVIYKIEVPANRYDLLCLEGIAQALRVFNKQQEIPKYTLS---------DV----- 102
E + PA + L VF IP LS DV
Sbjct: 356 TTIIESSLNVLEPAEYRKMF------DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN 409
Query: 103 --SKDSMLQMHVKPETSSIRPYVVCAVLRDISFDEASYNSFIDLQDKLHQNICRRRTLVA 160
K S+++ K T SI I + ++ + LH++I +
Sbjct: 410 KLHKYSLVEKQPKESTISIP---------SIYLE---LKVKLENEYALHRSIVDHYNIPK 457
Query: 161 -------------------IGTHDLDTLQGPFTYEALPPSHIN--FVPLKQTRDFTADEL 199
IG H L ++ P ++ F+ K D TA
Sbjct: 458 TFDSDDLIPPYLDQYFYSHIGHH-LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNA 516
Query: 200 MEFYKSDLK-LKKYL-HIIENSPLYPVLYD-------QNRTVLSLPPIINGAHSAITLKT 250
+ L+ LK Y +I +N P Y L + + L + A+ +
Sbjct: 517 SGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAED 576
Query: 251 KNVFIE 256
+ +F E
Sbjct: 577 EAIFEE 582
Score = 38.3 bits (88), Expect = 0.008
Identities = 40/272 (14%), Positives = 79/272 (29%), Gaps = 65/272 (23%)
Query: 365 HPCDVMEDVAIAYGYNNI-PKRKPASVKPLALNEFSDLMRLEIAMNGFTEV--------- 414
H D E Y Y +I + A V + D+ + ++ +
Sbjct: 5 HHMD-FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG 63
Query: 415 ---LTWILCSSKE------ISTMLNRQTD---ESTAVVGN---PRTSDFEVVRTTLMPGI 459
L W L S +E + +L T + R L
Sbjct: 64 TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123
Query: 460 LKTIGHNKDHPKPI-----KIYEV--GDVVLLDEKKDVGASCRRRLAALYCGANSGFE-- 510
+N +P + E+ VL+D G + +A C + +
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW---VALDVC-LSYKVQCK 179
Query: 511 ---------LIHCLVDR-IMEVIGTPFVPVGDDTGYYIQRSDEPEFLPGRQASITHKGK- 559
L +C ++E++ + + + RSD + R SI + +
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN---WTSRSDHSSNIKLRIHSIQAELRR 236
Query: 560 ------HVGTFGIV----HPEVLNNFDISDPC 581
+ ++ + + N F++S C
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWNAFNLS--C 266
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 54.3 bits (130), Expect = 1e-07
Identities = 104/610 (17%), Positives = 173/610 (28%), Gaps = 221/610 (36%)
Query: 64 YKIEVPANRYDLLCLEGIAQALR-VFNKQQEIPKYTLSDVSKDS-----------MLQMH 111
+ + VP + IA L+ FNK P + + + +
Sbjct: 18 HVLLVPTASF------FIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSL 71
Query: 112 VKPETSSIRPYVVCAVLRDISFDEASYNSFIDLQDK-LHQNICRRRTLVAIGTHDLDTLQ 170
V+P V+ L + F E Y L+ +H L A + DT
Sbjct: 72 VEPSKVGQFDQVLNLCLTE--F-ENCY-----LEGNDIH-------ALAAKLLQENDTTL 116
Query: 171 GPFT------YEALPPSHINFVPLKQTRDFTA----------------------DELMEF 202
A + F + F A +EL +
Sbjct: 117 VKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDL 176
Query: 203 YKS------DL------KLKKYL-HIIENSPLYP-------VLYDQNRT-----VLSLP- 236
Y++ DL L + + ++ ++ L + + T +LS+P
Sbjct: 177 YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPI 236
Query: 237 --PIING----AHSAITLKTKNV----FIECTATDLTKAKIVLNTMVTI--------FSE 278
P+I G AH +T K ++ ++ T V I F
Sbjct: 237 SCPLI-GVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLV-TAVAIAETDSWESFFV 294
Query: 279 YCKRKYQVEPVEVVYADG-RSY-VYPDLSAYNMEVSLSYINHTIGV--------SLEAEE 328
RK + V++ G R Y YP+ S + + + GV +L E+
Sbjct: 295 -SVRKA----ITVLFFIGVRCYEAYPNTSL-PPSILEDSLENNEGVPSPMLSISNLTQEQ 348
Query: 329 VTSLLNRMQLHAERSASGNNQWNI-------NVLV--PPTRSDVLHPCDVMEDVAIAYGY 379
V +N+ H Q I N++V PP + + G
Sbjct: 349 VQDYVNKTNSH----LPAGKQVEISLVNGAKNLVVSGPP--QSLYGLNLTLRKAKAPSGL 402
Query: 380 N--NIP--KRKPASVKPLALNEF--------SDLMRLEIAMNGFTEVLT--WILCSSKEI 425
+ IP +RK N F S L L A + + L + ++K+I
Sbjct: 403 DQSRIPFSERKLKFS-----NRFLPVASPFHSHL--LVPASDLINKDLVKNNVSFNAKDI 455
Query: 426 -----STMLNRQTDESTAVVGNPRTSDFEVVRTTLMPGIL-------KTIGHNKDHPKPI 473
T D S + R + ++ I+ T H
Sbjct: 456 QIPVYDT-----FDGS-----DLRVLSGSISE-RIVDCIIRLPVKWETTTQFKATH---- 500
Query: 474 KIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVIGTPFVPVG-- 531
+L D G G SG + L R + G + G
Sbjct: 501 --------IL-----DFGP-----------GGASG---LGVLTHRNKDGTGVRVIVAGTL 533
Query: 532 -----DDTGY 536
DD G+
Sbjct: 534 DINPDDDYGF 543
Score = 31.9 bits (72), Expect = 0.76
Identities = 34/195 (17%), Positives = 62/195 (31%), Gaps = 54/195 (27%)
Query: 388 ASVKPLALN----EFSDLMRLEIAMNGFTEVLTWILCS--SKEISTMLNRQTDESTAVVG 441
S +PL L+ E L + ++ + S ++ + +L T+ A
Sbjct: 4 YSTRPLTLSHGSLEHV----LLVPTA------SFFIASQLQEQFNKILPEPTEGFAA--D 51
Query: 442 NPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIKIYEVGDVVLLDEKKDVGASCRRRLAAL 501
+ T+ E+V K +G+ V +V E VG + L
Sbjct: 52 DEPTTPAELV--------GKFLGY------------VSSLV---EPSKVGQF-DQVLNLC 87
Query: 502 YCGANSGFEL----IHCLVDRIMEVIGTPFVPVGDD-TGYYIQR--SDEPEFLPGR---- 550
+ + L IH L ++++ T V + Y R + P
Sbjct: 88 LTEFENCY-LEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALF 146
Query: 551 QASITHKGKHVGTFG 565
+A + V FG
Sbjct: 147 RAVGEGNAQLVAIFG 161
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 701
Score = 41.5 bits (97), Expect = 8e-04
Identities = 39/276 (14%), Positives = 79/276 (28%), Gaps = 37/276 (13%)
Query: 327 EEVTSLLNRMQLHAERSASGNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYGYNNIPKRK 386
E + RM + ++ +I P VL C + + + K
Sbjct: 72 ENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEKIS 131
Query: 387 PASVKPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLN-------RQTDESTAV 439
+ ++E + ++ + + L EIS L + ++
Sbjct: 132 QIEKLGIKVSEHKESLQKILHGYKKGTLDGDDL--VLEISNALEISSEMGLKILEDVFPE 189
Query: 440 VGNPRTSDFEVV-RTTLMPGILKTIGHNKDH-PKPIKIYEVGDVVLLDEKKDVGASCRRR 497
+ ++ R+ + G T+ + P P K++ + ++K+D +
Sbjct: 190 FKDLTAVSSKLTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKED-----KSH 244
Query: 498 LAA------LYCGANSGF-ELIHCLVD--RIMEVIGTPFVPVGDDTGYYIQRSDEPEFLP 548
L G + F+P + YY + E
Sbjct: 245 LMTYHSASCAIAGEGVDINDGKAIAEGLLSQFGFTNFKFIPDEKKSKYYTP-ETQTE--- 300
Query: 549 GRQASITHKGKH----VGTFGIVHPEVLNNFDISDP 580
H V TFG+ P L+ + I D
Sbjct: 301 ---VYAYHPKLKEWLEVATFGVYSPVALSKYGI-DV 332
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 685
Score = 39.2 bits (91), Expect = 0.004
Identities = 40/276 (14%), Positives = 80/276 (28%), Gaps = 37/276 (13%)
Query: 327 EEVTSLLNRMQLHAERSASGNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYGYNNIPKRK 386
E + RM + ++ +I P VL C + + + K
Sbjct: 72 ENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEKIS 131
Query: 387 PASVKPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLN-------RQTDESTAV 439
+ ++E + ++ + + L EIS L + ++
Sbjct: 132 QIEKLGIKVSEHKESLQKILHGYKKGTLDGDDL--VLEISNALEISSEMGLKILEDVFPE 189
Query: 440 VGNPRTSDFEVV-RTTLMPGILKTIGHNKDH-PKPIKIYEVGDVVLLDEKKDVGASCRRR 497
+ ++ R+ + G T+ + P P K++ + ++K+D +
Sbjct: 190 FKDLTAVSSKLTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKED-----KSH 244
Query: 498 LAA------LYCGANSGF-ELIHCLVD--RIMEVIGTPFVPVGDDTGYYIQRSDEPEFLP 548
L G + F+P + YY PE
Sbjct: 245 LMTYHSASCAIAGEGVDINDGKAIAEGLLSQFGFTNFKFIPDEKKSKYY-----TPETQT 299
Query: 549 GRQASITHKGKH----VGTFGIVHPEVLNNFDISDP 580
+ H V TFG+ P L+ + I D
Sbjct: 300 --EVYAYHPKLKEWLEVATFGVYSPVALSKYGI-DV 332
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 665
Score = 38.0 bits (88), Expect = 0.009
Identities = 39/276 (14%), Positives = 79/276 (28%), Gaps = 37/276 (13%)
Query: 327 EEVTSLLNRMQLHAERSASGNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYGYNNIPKRK 386
E + RM + ++ +I P VL C + + + K
Sbjct: 72 ENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEKIS 131
Query: 387 PASVKPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLN-------RQTDESTAV 439
+ ++E + ++ + + L EIS L + ++
Sbjct: 132 QIEKLGIKVSEHKESLQKILHGYKKGTLDGDDL--VLEISNALEISSEMGLKILEDVFPE 189
Query: 440 VGNPRTSDFEVV-RTTLMPGILKTIGHNKDH-PKPIKIYEVGDVVLLDEKKDVGASCRRR 497
+ ++ R+ + G T+ + P P K++ + ++K+D +
Sbjct: 190 FKDLTAVSSKLTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKED-----KSH 244
Query: 498 LAA------LYCGANSGF-ELIHCLVD--RIMEVIGTPFVPVGDDTGYYIQRSDEPEFLP 548
L G + F+P + YY + E
Sbjct: 245 LMTYHSASCAIAGEGVDINDGKAIAEGLLSQFGFTNFKFIPDEKKSKYYTP-ETQTE--- 300
Query: 549 GRQASITHKGKH----VGTFGIVHPEVLNNFDISDP 580
H V TFG+ P L+ + I D
Sbjct: 301 ---VYAYHPKLKEWLEVATFGVYSPVALSKYGI-DV 332
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 648
Score = 37.7 bits (87), Expect = 0.012
Identities = 41/276 (14%), Positives = 77/276 (27%), Gaps = 37/276 (13%)
Query: 327 EEVTSLLNRMQLHAERSASGNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYGYNNIPKRK 386
E + RM + ++ +I P VL C + + + K
Sbjct: 72 ENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEKIS 131
Query: 387 PASVKPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQT--------DESTA 438
+ ++E + ++ + + L EIS L + D
Sbjct: 132 QIEKLGIKVSEHKESLQKILHGYKKGTLDGDDL--VLEISNALEISSEMGLKILEDVFPE 189
Query: 439 VVGNPRTSDFEVVRTTLMPGILKTIGHNKDH-PKPIKIYEVGDVVLLDEKKDVGASCRRR 497
S +R+ + G T+ + P P K++ + ++K+D +
Sbjct: 190 FKDLTAVSSKLTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKED-----KSH 244
Query: 498 LAA------LYCGANSGF-ELIHCLVD--RIMEVIGTPFVPVGDDTGYYIQRSDEPEFLP 548
L G + F+P + YY + E
Sbjct: 245 LMTYHSASCAIAGEGVDINDGKAIAEGLLSQFGFTNFKFIPDEKKSKYYTP-ETQTE--- 300
Query: 549 GRQASITHKGKH----VGTFGIVHPEVLNNFDISDP 580
H V TFG+ P L+ + I D
Sbjct: 301 ---VYAYHPKLKEWLEVATFGVYSPVALSKYGI-DV 332
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 33.2 bits (75), Expect = 0.15
Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 13/65 (20%)
Query: 34 ELDDVTTEKAIIRK-----EKHLDEEGDENDEEVIYKIEVPANRYDLLCLEGIAQALRVF 88
+ D +T E IRK K L +E D + + + A + + + +
Sbjct: 76 QADRLTQEPESIRKWREEQRKRL-QELDAASKVMEQEWREKAKKD-------LEEWNQRQ 127
Query: 89 NKQQE 93
++Q E
Sbjct: 128 SEQVE 132
>1tz7_A 4-alpha-glucanotransferase; (beta, alpha)8- barrel; 2.15A {Aquifex
aeolicus} SCOP: c.1.8.1
Length = 505
Score = 33.8 bits (78), Expect = 0.17
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 154 RRRTLVAIGTHDLDTLQG 171
+ THDL ++G
Sbjct: 394 EENNVYYTSTHDLPPIRG 411
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.24
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 325 EAEEVTSLLNRMQLHAERSA 344
E + + L ++L+A+ SA
Sbjct: 18 EKQALKKLQASLKLYADDSA 37
>1esw_A Amylomaltase; (beta,alpha)8-barrel, glucanotransferase,
alpha-amylase FAMI acarbose, transferase; HET: ACR;
1.90A {Thermus aquaticus} SCOP: c.1.8.1 PDB: 1cwy_A*
1fp8_A 1fp9_A 2owc_A* 2oww_A* 2owx_A* 2x1i_A*
Length = 500
Score = 32.3 bits (74), Expect = 0.42
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 149 HQNICRRRTLVAIGTHDLDTLQG 171
H R +V GTHD DT G
Sbjct: 379 HNYPAHGRVVVYTGTHDNDTTLG 401
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein
O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB:
2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Length = 568
Score = 32.5 bits (74), Expect = 0.47
Identities = 15/78 (19%), Positives = 26/78 (33%), Gaps = 3/78 (3%)
Query: 10 RLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEVP 69
L AL ++ + + + F DD +T + + + L + I
Sbjct: 222 LLTVALFEALQRRQPDLQMHLFATSGDDGSTLRTRLAQASTLHDVTALGHLATAKHIR-- 279
Query: 70 ANRYDLL-CLEGIAQALR 86
+ DLL L G R
Sbjct: 280 HHGIDLLFDLRGWGGGGR 297
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B
O-methyl tyrosine binding, magnesium binding,
aminoacylatio esterification; HET: 0A1 ANP; 1.75A
{Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A*
2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A*
Length = 290
Score = 31.4 bits (71), Expect = 0.81
Identities = 31/193 (16%), Positives = 58/193 (30%), Gaps = 26/193 (13%)
Query: 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAVVGN--PRTSDFEVVR 452
L + + GF E+ + IL + R ++ + R +R
Sbjct: 79 LGKLEREITRFFVDRGFLEIKSPIL----IPLEYIERMGIDNDTELSKQIFRVDKNFCLR 134
Query: 453 TTLMPGILKTI-GHNKDHPKPIKIYEVGDVVLLDEKKDVGASCRRR----LAALYCGANS 507
L P + + ++ P PIKI+E+G E L G+
Sbjct: 135 PMLTPNLYNYLRKLDRALPDPIKIFEIGP-CYRKESDGKE---HLEEFTMLVFWQMGSGC 190
Query: 508 GFELIHCLVDRIMEVIGTPFVPVGDDTGYYIQRSDEPEFLPGRQASITHKGKHVGTFGIV 567
E + ++ + +G F VGD + D H + + +
Sbjct: 191 TRENLESIITDFLNHLGIDFKIVGDSCMVFGDTLDV-----------MHGDLELSSALVG 239
Query: 568 HPEVLNNFDISDP 580
+ + I P
Sbjct: 240 PIPLDREWGIDKP 252
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural
genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Length = 549
Score = 31.5 bits (71), Expect = 0.95
Identities = 8/20 (40%), Positives = 11/20 (55%), Gaps = 1/20 (5%)
Query: 561 VGTFGIVHPEVLNNFDISDP 580
V TFG+ P L ++I D
Sbjct: 307 VATFGVYSPIALAKYNI-DV 325
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA
complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB:
2du4_A 2du5_A* 2du6_A*
Length = 534
Score = 31.0 bits (70), Expect = 1.3
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 561 VGTFGIVHPEVLNNFDI 577
+ TFGI P L +DI
Sbjct: 303 IATFGIYSPTALAEYDI 319
>1x1n_A 4-alpha-glucanotransferase; disproportionating enzyme,
amylomaltase, D-enzyme; 1.80A {Solanum tuberosum} SCOP:
c.1.8.1
Length = 524
Score = 30.1 bits (68), Expect = 2.5
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 155 RRTLVAIGTHDLDTLQG 171
+ +V GTHD DT++G
Sbjct: 411 QNQVVYTGTHDNDTIRG 427
>2w1j_A Putative sortase, sortase C-1; pathogenicity, transferase; 1.24A
{Streptococcus pneumoniae} PDB: 2wts_A 3re9_A
Length = 212
Score = 28.8 bits (64), Expect = 4.0
Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 11/74 (14%)
Query: 234 SLPPIINGAHSAIT----LKTKNVFIECTATDLTKAKIVLNTMVTIFSEYCKRKYQVEPV 289
SLP N H+ IT L T +F TDLTK K+ + + YQV+ V
Sbjct: 100 SLPIGGNSTHAVITAHTGLPTAKMF-----TDLTKLKV--GDKFYVHNIKEVMAYQVDQV 152
Query: 290 EVVYADGRSYVYPD 303
+V+ +
Sbjct: 153 KVIEPTNFDDLLIV 166
>2jvv_A Transcription antitermination protein NUSG; transcription factor,
transcription regulation, transcription termination; NMR
{Escherichia coli} PDB: 2k06_A 2kvq_G
Length = 181
Score = 28.6 bits (65), Expect = 4.2
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 6/37 (16%)
Query: 446 SDFEVVRTTLMPGILKTIGHNKDHPKPIKIYEVGDVV 482
SD EV I+ + D P+P ++E G++V
Sbjct: 104 SDKEVDA------IMNRLQQVGDKPRPKTLFEPGEMV 134
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB:
3tii_A* 3tin_A*
Length = 380
Score = 29.2 bits (65), Expect = 4.3
Identities = 14/66 (21%), Positives = 18/66 (27%)
Query: 146 DKLHQNICRRRTLVAIGTHDLDTLQGPFTYEALPPSHINFVPLKQTRDFTADELMEFYKS 205
L + I L T ++ T E P DE EF S
Sbjct: 78 ASLVKLIKTSPELTETCTWFPESYVIYPTNEKTPAMRARNGLPDLANAPRTDEREEFRSS 137
Query: 206 DLKLKK 211
K K+
Sbjct: 138 FNKKKE 143
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, alternative
splicing, FBP interacting repressor, RRM, electron
transport; 2.20A {Escherichia coli O157}
Length = 222
Score = 27.9 bits (62), Expect = 7.6
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 10/48 (20%)
Query: 21 KEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEV 68
+ E + C FG + II +EK +G+E D E+I KI V
Sbjct: 143 EGEVTEECGKFG------AVNRVIIYQEK----QGEEEDAEIIVKIFV 180
>3o0p_A Sortase family protein; PILI assembly, PILI subunits, transferase
,hydrolas transferase, hydrolase; 1.30A {Streptococcus
agalactiae}
Length = 216
Score = 27.6 bits (61), Expect = 8.9
Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 11/74 (14%)
Query: 234 SLPPIINGAHSAIT----LKTKNVFIECTATDLTKAKIVLNTMVTIFSEYCKRKYQVEPV 289
SLP N H+ IT + K +F ++L K K I + YQV+ +
Sbjct: 104 SLPIGGNSTHTVITAHSGIPDKELF-----SNLKKLKK--GDKFYIQNIKETIAYQVDQI 156
Query: 290 EVVYADGRSYVYPD 303
+VV D S +
Sbjct: 157 KVVTPDNFSDLLVV 170
>3g66_A Sortase C; pilus, transferase; HET: MES; 1.70A {Streptococcus
pneumoniae} PDB: 3g69_A*
Length = 212
Score = 27.6 bits (61), Expect = 9.5
Identities = 17/74 (22%), Positives = 25/74 (33%), Gaps = 11/74 (14%)
Query: 234 SLPPIINGAHSAIT----LKTKNVFIECTATDLTKAKIVLNTMVTIFSEYCKRKYQVEPV 289
SLP H+ IT L T +F + L K K + + YQV+ +
Sbjct: 99 SLPVGGENTHTVITAHRGLPTAELF-----SQLDKMKK--GDIFYLHVLDQVLAYQVDQI 151
Query: 290 EVVYADGRSYVYPD 303
V + V
Sbjct: 152 VTVEPNDFEPVLIQ 165
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.400
Gapped
Lambda K H
0.267 0.0562 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,157,679
Number of extensions: 567121
Number of successful extensions: 1320
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1282
Number of HSP's successfully gapped: 43
Length of query: 592
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 493
Effective length of database: 3,937,614
Effective search space: 1941243702
Effective search space used: 1941243702
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.3 bits)