Query 007712
Match_columns 592
No_of_seqs 171 out of 316
Neff 3.3
Searched_HMMs 46136
Date Thu Mar 28 14:19:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007712.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007712hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03110 SBP: SBP domain; Int 100.0 9.8E-38 2.1E-42 264.2 -1.5 78 149-226 1-78 (79)
2 PF10866 DUF2704: Protein of u 68.9 3.8 8.2E-05 40.3 2.5 31 451-481 122-159 (168)
3 cd02969 PRX_like1 Peroxiredoxi 41.3 45 0.00099 30.8 4.7 48 431-478 116-169 (171)
4 PF14901 Jiv90: Cleavage induc 38.7 15 0.00032 33.4 1.0 18 187-204 26-43 (94)
5 PRK00241 nudC NADH pyrophospha 31.1 13 0.00027 38.2 -0.8 37 162-199 92-128 (256)
6 PF10083 DUF2321: Uncharacteri 25.5 28 0.0006 34.3 0.5 33 164-196 2-36 (158)
7 PF12362 DUF3646: DNA polymera 22.7 67 0.0014 29.9 2.4 28 433-460 35-62 (117)
8 COG2816 NPY1 NTP pyrophosphohy 18.7 33 0.00072 36.4 -0.5 36 162-198 104-139 (279)
9 PF00739 X: Trans-activation p 18.6 48 0.001 32.0 0.6 42 446-497 86-127 (142)
10 cd01261 PH_SOS Son of Sevenles 18.3 1.7E+02 0.0036 27.1 4.0 37 522-558 20-76 (112)
No 1
>PF03110 SBP: SBP domain; InterPro: IPR004333 The SBP plant protein domain is a sequence specific DNA-binding domain []. Proteins with this domain probably function as transcription factors involved in the control of early flower development. The domain contains 10 conserved cysteine and histidine residues that probably are zinc ligands.; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 1UL4_A 1WJ0_A 1UL5_A.
Probab=100.00 E-value=9.8e-38 Score=264.18 Aligned_cols=78 Identities=65% Similarity=1.133 Sum_probs=63.2
Q ss_pred ceeecCCchhhcccchhhhcccchhhhcccceeeeCCchhhhhHhhhcccccccccCccchHHHHHhhHhhhhcCCCC
Q 007712 149 VCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNP 226 (592)
Q Consensus 149 ~CQV~GC~adLs~~k~Y~rRhrVCe~H~kA~~V~v~G~~qRFCQQCsrFH~L~eFDg~kRSCR~rL~~Hn~RRRk~~~ 226 (592)
+||||||++||+.+|.||+||||||.|+|||+|+++|.++||||||+|||+|+||||+|||||++|++||+||||.++
T Consensus 1 ~CqV~gC~~dL~~~k~Y~rR~rICe~H~ka~~V~~~G~~~RFCQQC~rfh~l~eFdg~kRSCr~~L~~h~~RRr~~~~ 78 (79)
T PF03110_consen 1 RCQVDGCGADLSGAKEYHRRYRICEEHAKAPVVVVDGVEQRFCQQCGRFHPLSEFDGGKRSCRARLARHNERRRKRQQ 78 (79)
T ss_dssp C-SSTTEE-EETS--SSCCCTT--HHHHTHSEEEETTEEEEE-TTTSSEEETTCB-SSTTSBSTTTT-SSS---S-S-
T ss_pred CCcCCCCCcchhhhHHHhhccCcchhhcCCCeEEECChhHHHHHHHHcCCCHHHHcchhhhHHHHHHHHHHHhccccC
Confidence 699999999999999999999999999999999999999999999999999999999999999999999999999875
No 2
>PF10866 DUF2704: Protein of unknown function (DUF2704); InterPro: IPR022594 This group of viral proteins has no known function.
Probab=68.94 E-value=3.8 Score=40.26 Aligned_cols=31 Identities=29% Similarity=0.654 Sum_probs=25.9
Q ss_pred HHHHHHHHHhhcCCCC-------CCcccccCCceeehh
Q 007712 451 LVLRAQILDWLSHSPS-------DMESYIRPGCVILTI 481 (592)
Q Consensus 451 ~~LR~QIlnWLS~sPs-------dmEsYIRPGCvILTI 481 (592)
.++..+|+|-|.+.=+ .--+||.|.|||||.
T Consensus 122 ~T~kn~vLnVlnn~L~d~~~~~d~~~~yikpnciv~tf 159 (168)
T PF10866_consen 122 NTFKNAVLNVLNNELSDEANEYDTSAGYIKPNCIVLTF 159 (168)
T ss_pred hHHHHHHHHHHhhhccccccccccccCccCCCeEEEee
Confidence 3688999999988766 246999999999995
No 3
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=41.28 E-value=45 Score=30.83 Aligned_cols=48 Identities=19% Similarity=0.239 Sum_probs=35.5
Q ss_pred cccccceEEEe-cCCCCCC-----CcHHHHHHHHHhhcCCCCCCcccccCCcee
Q 007712 431 QSRTDRIVFKL-FGKEPND-----FPLVLRAQILDWLSHSPSDMESYIRPGCVI 478 (592)
Q Consensus 431 q~RTgRI~FKL-FdK~P~d-----FP~~LR~QIlnWLS~sPsdmEsYIRPGCvI 478 (592)
-++.|||++.= ++-.... =...|++.|-.||+..+.+.|--+=+||.+
T Consensus 116 id~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 169 (171)
T cd02969 116 FDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGKPVPVPQTPSIGCSI 169 (171)
T ss_pred ECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcCCCCCccccCCCCccc
Confidence 46789998751 1111111 135699999999999999999999999975
No 4
>PF14901 Jiv90: Cleavage inducing molecular chaperone
Probab=38.75 E-value=15 Score=33.42 Aligned_cols=18 Identities=39% Similarity=0.696 Sum_probs=14.9
Q ss_pred hhhhhHhhhccccccccc
Q 007712 187 MQRFCQQCSRFHVLQEFD 204 (592)
Q Consensus 187 ~qRFCQQCsrFH~L~eFD 204 (592)
.-|+||+|+.+|+-.+=|
T Consensus 26 ~AR~C~~C~~~H~Ak~gD 43 (94)
T PF14901_consen 26 AARYCQDCKIRHPAKEGD 43 (94)
T ss_pred hhHhHHHhhhhcccccCC
Confidence 469999999999876654
No 5
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=31.08 E-value=13 Score=38.22 Aligned_cols=37 Identities=14% Similarity=0.352 Sum_probs=28.7
Q ss_pred cchhhhcccchhhhcccceeeeCCchhhhhHhhhcccc
Q 007712 162 AKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHV 199 (592)
Q Consensus 162 ~k~Y~rRhrVCe~H~kA~~V~v~G~~qRFCQQCsrFH~ 199 (592)
+-.+|++||-|..+-....+.. +...|.|..|+..|-
T Consensus 92 l~~w~~~~~fC~~CG~~~~~~~-~~~~~~C~~c~~~~y 128 (256)
T PRK00241 92 LAEFYRSHRFCGYCGHPMHPSK-TEWAMLCPHCRERYY 128 (256)
T ss_pred HHHHhhcCccccccCCCCeecC-CceeEECCCCCCEEC
Confidence 4579999999999888766554 456689999997653
No 6
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=25.53 E-value=28 Score=34.32 Aligned_cols=33 Identities=18% Similarity=0.423 Sum_probs=26.4
Q ss_pred hhhhcccchhh-hcccceeeeC-CchhhhhHhhhc
Q 007712 164 DYHRRHKVCEM-HSKASRALVG-NVMQRFCQQCSR 196 (592)
Q Consensus 164 ~Y~rRhrVCe~-H~kA~~V~v~-G~~qRFCQQCsr 196 (592)
.||+-..||.- |.-...+.-+ -..+-||.|||.
T Consensus 2 g~y~~aqiC~NGH~~t~~~~~~p~~~~~fC~kCG~ 36 (158)
T PF10083_consen 2 GTYRIAQICLNGHVITDSYDKNPELREKFCSKCGA 36 (158)
T ss_pred cchhHHHHccCccccccccccCchHHHHHHHHhhH
Confidence 47888889987 8777777766 568899999995
No 7
>PF12362 DUF3646: DNA polymerase III gamma and tau subunits C terminal; InterPro: IPR022107 This domain family is found in bacteria, and is approximately 120 amino acids in length. The family is found in association with PF00004 from PFAM. The proteins in this family are frequently annotated as the gamma and tau subunits of DNA polymerase III, however there is little accompanying literature to back this up.
Probab=22.72 E-value=67 Score=29.90 Aligned_cols=28 Identities=25% Similarity=0.530 Sum_probs=26.6
Q ss_pred cccceEEEecCCCCCCCcHHHHHHHHHh
Q 007712 433 RTDRIVFKLFGKEPNDFPLVLRAQILDW 460 (592)
Q Consensus 433 RTgRI~FKLFdK~P~dFP~~LR~QIlnW 460 (592)
.-|||.|.+=..-|.||.++|..-+.+|
T Consensus 35 ~pGrie~~~~~~ap~dl~~~L~~~L~~w 62 (117)
T PF12362_consen 35 EPGRIEFRPTPGAPKDLAQRLSRKLQEW 62 (117)
T ss_pred cCCEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 4699999999999999999999999999
No 8
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=18.70 E-value=33 Score=36.37 Aligned_cols=36 Identities=19% Similarity=0.409 Sum_probs=27.8
Q ss_pred cchhhhcccchhhhcccceeeeCCchhhhhHhhhccc
Q 007712 162 AKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFH 198 (592)
Q Consensus 162 ~k~Y~rRhrVCe~H~kA~~V~v~G~~qRFCQQCsrFH 198 (592)
+-.+|++||.|..+- +++...+|...|-|++|+.-|
T Consensus 104 l~~w~~~~RFCg~CG-~~~~~~~~g~~~~C~~cg~~~ 139 (279)
T COG2816 104 LLEWYRSHRFCGRCG-TKTYPREGGWARVCPKCGHEH 139 (279)
T ss_pred HHHHHhhCcCCCCCC-CcCccccCceeeeCCCCCCcc
Confidence 346899999998654 566667777889999999644
No 9
>PF00739 X: Trans-activation protein X; InterPro: IPR000236 The Hepatitis B virus (HBV) X gene shares sequences with both the polymerase and precore genes, carries several regulatory signals critical to the replicative cycle, and its product has a transactivating function []. The transactivating function is probably associated with a tumourigenic potential of HBx, since x gene sequences, encoding functional HBx, have been repeatedly found integrated into the genome of liver carcinoma cells [].; GO: 0019079 viral genome replication; PDB: 3I7H_B 3I7K_B.
Probab=18.57 E-value=48 Score=32.00 Aligned_cols=42 Identities=33% Similarity=0.676 Sum_probs=10.5
Q ss_pred CCCCcHHHHHHHHHhhcCCCCCCcccccCCceeehhhhhccHHHHHHHhhhH
Q 007712 446 PNDFPLVLRAQILDWLSHSPSDMESYIRPGCVILTIYLRQAEAAWEELCCDL 497 (592)
Q Consensus 446 P~dFP~~LR~QIlnWLS~sPsdmEsYIRPGCvILTIyl~mp~a~WeeL~~dl 497 (592)
|--||..|..--+.-..-+.+|+|.||+- ||+ ..||||-|+.
T Consensus 86 ~~~lpkvl~KRtLGls~msttdleaYfKD-cvf---------k~WEElGee~ 127 (142)
T PF00739_consen 86 HQSLPKVLHKRTLGLSAMSTTDLEAYFKD-CVF---------KDWEELGEEI 127 (142)
T ss_dssp ---HHHHHHHHHHS--------------------------------------
T ss_pred cccccHHHhhccccccccchHHHHHHHHH-HHH---------HHHhhhcccc
Confidence 55699999999999888899999999995 443 4799997764
No 10
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain. Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=18.35 E-value=1.7e+02 Score=27.07 Aligned_cols=37 Identities=22% Similarity=0.372 Sum_probs=27.6
Q ss_pred EcceEEEEECCeEEEeec--------------------cCcceeeEEEcCCCccccc
Q 007712 522 VQHQIAFIYNGLLAFDFY--------------------ICLSKFCIFDLTNNSNLEN 558 (592)
Q Consensus 522 v~~qla~~~nGqv~ld~~--------------------l~~~~~~~~~~~~~~~~~~ 558 (592)
.+...+|..|+.+++|++ ....++-|.|+.++..+.|
T Consensus 20 ~q~R~~FLFd~~Li~CK~~~~~~~~~g~~~~~y~~k~~~~l~~~~V~d~~d~~~~kn 76 (112)
T cd01261 20 KHERHVFLFDGLMVLCKSNHGQPRLPGASSAEYRLKEKFFMRKVDINDKPDSSEYKN 76 (112)
T ss_pred cceEEEEEecCeEEEEEeccCcccccccccceEEEEEEEeeeeeEEEEcCCCcccCc
Confidence 456789999999999998 4455567777777665543
Done!