Query 007712
Match_columns 592
No_of_seqs 171 out of 316
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 08:37:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007712.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007712hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ul4_A SPL4, squamosa promoter 100.0 2.8E-41 9.6E-46 292.3 -0.7 90 142-231 3-92 (94)
2 1ul5_A SPL7, squamosa promoter 100.0 5.2E-40 1.8E-44 281.6 -0.9 83 146-228 2-84 (88)
3 1wj0_A Squamosa promoter-bindi 100.0 1.3E-30 4.6E-35 209.8 0.7 59 146-204 2-60 (60)
4 3fau_A NEDD4-binding protein 2 23.1 25 0.00086 28.5 1.0 31 450-481 51-81 (82)
5 4f8a_A Potassium voltage-gated 22.6 1E+02 0.0035 25.5 4.6 66 447-538 10-83 (160)
6 1wy1_A Hypothetical protein PH 18.1 1.1E+02 0.0039 28.7 4.3 53 451-505 85-150 (172)
7 3fy6_A Integron cassette prote 17.1 60 0.0021 29.2 2.1 36 480-515 75-124 (126)
8 2k75_A Uncharacterized protein 16.8 66 0.0023 27.4 2.2 17 429-445 43-59 (106)
9 1vk6_A NADH pyrophosphatase; 1 15.9 23 0.00078 34.9 -1.0 37 162-199 100-136 (269)
10 2ywi_A Hypothetical conserved 15.8 1.6E+02 0.0055 25.5 4.6 47 432-478 138-190 (196)
No 1
>1ul4_A SPL4, squamosa promoter binding protein-like 4; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=100.00 E-value=2.8e-41 Score=292.27 Aligned_cols=90 Identities=63% Similarity=1.075 Sum_probs=80.5
Q ss_pred CCCCCCCceeecCCchhhcccchhhhcccchhhhcccceeeeCCchhhhhHhhhcccccccccCccchHHHHHhhHhhhh
Q 007712 142 GGSSSRAVCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRR 221 (592)
Q Consensus 142 ~~~~~~~~CQV~GC~adLs~~k~Y~rRhrVCe~H~kA~~V~v~G~~qRFCQQCsrFH~L~eFDg~kRSCR~rL~~Hn~RR 221 (592)
+++++.++||||||++||+.+|.||+||||||.|+|||+|+|+|+++||||||+|||+|+|||++|||||+||++||+||
T Consensus 3 ~~~~~~~~CqV~GC~~dL~~~k~Y~rR~rvCe~H~ka~~V~~~G~~~RFCQQCsrFH~L~eFD~~kRSCR~rL~~hn~RR 82 (94)
T 1ul4_A 3 SGSSGLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRSCRRRLAGHNERR 82 (94)
T ss_dssp -----CCCCSSTTCCCCCTTCCHHHHHTTCCHHHHTCSCEEETTEEEEECTTTSSEEETTTCCSSCCSCSTTTTCCCCCC
T ss_pred CCCCCCCceecCCCCcchhhHHHHHHhhhhhHHHhcCCEEEECChhHHHHHHHhccCCHHHhccccchHHHHHHHHHHHh
Confidence 56778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCccC
Q 007712 222 RKTNPDAVAN 231 (592)
Q Consensus 222 Rk~~~~~~~~ 231 (592)
||++++....
T Consensus 83 Rk~~~~~~~~ 92 (94)
T 1ul4_A 83 RKSSGESGPS 92 (94)
T ss_dssp CSCCCC----
T ss_pred ccCCCCcCCC
Confidence 9999987643
No 2
>1ul5_A SPL7, squamosa promoter binding protein-like 7; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=100.00 E-value=5.2e-40 Score=281.57 Aligned_cols=83 Identities=52% Similarity=0.962 Sum_probs=79.4
Q ss_pred CCCceeecCCchhhcccchhhhcccchhhhcccceeeeCCchhhhhHhhhcccccccccCccchHHHHHhhHhhhhcCCC
Q 007712 146 SRAVCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTN 225 (592)
Q Consensus 146 ~~~~CQV~GC~adLs~~k~Y~rRhrVCe~H~kA~~V~v~G~~qRFCQQCsrFH~L~eFDg~kRSCR~rL~~Hn~RRRk~~ 225 (592)
+.++||||||++||+.+|+||+||||||.|+||++|+++|+++||||||+|||+|+|||++|||||++|++||+||||++
T Consensus 2 ~~~~CqV~GC~~dLs~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQC~rFH~L~eFD~~kRSCR~rL~~hn~RRR~~~ 81 (88)
T 1ul5_A 2 SVARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGKRSCRRKLERHNNRRKRKP 81 (88)
T ss_dssp -CCSCEETTEECCCSSCCSSSGGGTCCHHHHHHSEEEETTEEEEECTTTSSEEEGGGBCSSTTSBSSSCCCSSSCCCCCS
T ss_pred CCCeeecCCCCCChhHhhHHHhhccccHHHcCCCEEEECCEeeHHHHHhccccChhhhccccchHHHHHHHHHHHhccCC
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCC
Q 007712 226 PDA 228 (592)
Q Consensus 226 ~~~ 228 (592)
++.
T Consensus 82 ~~~ 84 (88)
T 1ul5_A 82 VDK 84 (88)
T ss_dssp CSS
T ss_pred ccC
Confidence 765
No 3
>1wj0_A Squamosa promoter-binding protein-like 12; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=99.96 E-value=1.3e-30 Score=209.84 Aligned_cols=59 Identities=78% Similarity=1.372 Sum_probs=57.1
Q ss_pred CCCceeecCCchhhcccchhhhcccchhhhcccceeeeCCchhhhhHhhhccccccccc
Q 007712 146 SRAVCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFD 204 (592)
Q Consensus 146 ~~~~CQV~GC~adLs~~k~Y~rRhrVCe~H~kA~~V~v~G~~qRFCQQCsrFH~L~eFD 204 (592)
+.++|||+||++||+.+|+|||||||||.|+||++|+++|+++||||||+|||+|+|||
T Consensus 2 ~~~~CqV~gC~~dl~~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQCsrFH~L~eFD 60 (60)
T 1wj0_A 2 SAICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD 60 (60)
T ss_dssp -CEECSSTTCCCEETSCCSSTTTTTCCHHHHTCSCEEETTEEECCCSSSCSCCBTTSCC
T ss_pred CCceeecCCCCcChhHhHHHhhccccChhHcCCCEEEECCEEEehhhhccCccCcccCC
Confidence 46899999999999999999999999999999999999999999999999999999998
No 4
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=23.14 E-value=25 Score=28.46 Aligned_cols=31 Identities=16% Similarity=0.520 Sum_probs=23.5
Q ss_pred cHHHHHHHHHhhcCCCCCCcccccCCceeehh
Q 007712 450 PLVLRAQILDWLSHSPSDMESYIRPGCVILTI 481 (592)
Q Consensus 450 P~~LR~QIlnWLS~sPsdmEsYIRPGCvILTI 481 (592)
+..||..|.+||...|-..+. .-|||+++.+
T Consensus 51 ~~~Lk~~V~~~L~~~~~~~~e-~n~G~l~V~l 81 (82)
T 3fau_A 51 VARIKPAVIKYLISHSFRFSE-IKPGCLKVML 81 (82)
T ss_dssp --CHHHHHHHHHHHTTCCEEE-EETTEEEEEC
T ss_pred cchHHHHHHHHHHhCCCceee-CCCEEEEEEe
Confidence 455999999999999866543 5899988753
No 5
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=22.57 E-value=1e+02 Score=25.50 Aligned_cols=66 Identities=14% Similarity=0.118 Sum_probs=39.1
Q ss_pred CCCcHHHHHHHHH-----hhcCCCCCCcccccCCceeehhhhhccHHHHHHHhhhHHHHHHHHhccCCCcccccceEEEE
Q 007712 447 NDFPLVLRAQILD-----WLSHSPSDMESYIRPGCVILTIYLRQAEAAWEELCCDLTFSLSRLLDLSNDSFWTSGWVYAR 521 (592)
Q Consensus 447 ~dFP~~LR~QIln-----WLS~sPsdmEsYIRPGCvILTIyl~mp~a~WeeL~~dl~~~v~~Ll~~S~~~FWrtG~~~v~ 521 (592)
..+|..||.+|.. +|.+. .+|-.+++..+++| +....--.+.+|-++++
T Consensus 10 ~~lp~~l~~~i~~~~~~~~l~~~---------------~~f~~l~~~~~~~l-----------~~~~~~~~~~~g~~i~~ 63 (160)
T 4f8a_A 10 QICPKDMRADICVHLNRKVFKEH---------------PAFRLASDGCLRAL-----------AMEFQTVHCAPGDLIYH 63 (160)
T ss_dssp -----CCHHHHHHHHTHHHHTTC---------------GGGTTCCHHHHHHH-----------HTTCEEEEECTTCEEEC
T ss_pred HHCCHHHHHHHHHHHHHHHHHhC---------------HhhhhCCHHHHHHH-----------HHhceeeeeCCCCEEEe
Confidence 4688888888653 55553 34556676655544 33333455666666666
Q ss_pred Ec---ceEEEEECCeEEEee
Q 007712 522 VQ---HQIAFIYNGLLAFDF 538 (592)
Q Consensus 522 v~---~qla~~~nGqv~ld~ 538 (592)
-+ +.+.++..|.|.+.+
T Consensus 64 ~g~~~~~~y~i~~G~v~~~~ 83 (160)
T 4f8a_A 64 AGESVDSLCFVVSGSLEVIQ 83 (160)
T ss_dssp TTSBCCEEEEEEESEEEEEE
T ss_pred CCCCccEEEEEEeeEEEEEE
Confidence 44 578899999998866
No 6
>1wy1_A Hypothetical protein PH0671; structural genomics, riken structural genomics/proteomics in RSGI, transferase; 1.80A {Pyrococcus horikoshii}
Probab=18.05 E-value=1.1e+02 Score=28.70 Aligned_cols=53 Identities=17% Similarity=0.153 Sum_probs=41.1
Q ss_pred HHHHHHHHHhhcCCCCCCcccccCCceeehhhhhccHHH--------H-----HHHhhhHHHHHHHHh
Q 007712 451 LVLRAQILDWLSHSPSDMESYIRPGCVILTIYLRQAEAA--------W-----EELCCDLTFSLSRLL 505 (592)
Q Consensus 451 ~~LR~QIlnWLS~sPsdmEsYIRPGCvILTIyl~mp~a~--------W-----eeL~~dl~~~v~~Ll 505 (592)
..|-..|..|-+..| +.++|=||......+|++.-.. | +++..++..||++|=
T Consensus 85 ~~LE~~id~~~~~lp--l~~FILPgg~~~aA~Lh~aRtv~RRAER~~v~l~~~~~v~~~~~~yLNRLS 150 (172)
T 1wy1_A 85 KWLEGLISRYEEMVN--LKSFVLPGGTLESAKLDVCRTIARRAERKVATVLREFGIGKEALVYLNRLS 150 (172)
T ss_dssp HHHHHHHHHHHTTCS--CCSSCCSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhCC--CcCeEECCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 457888999999999 9999999999999998775321 1 224567788888874
No 7
>3fy6_A Integron cassette protein; novel, oyster POND, woodshole,USA, unknown function, structural genomics, PSI-2, protein structure initiative; 2.10A {Vibrio cholerae}
Probab=17.12 E-value=60 Score=29.23 Aligned_cols=36 Identities=19% Similarity=0.270 Sum_probs=26.0
Q ss_pred hhhhhccHHHHHHH-----h--------hhHHHHHHHH-hccCCCccccc
Q 007712 480 TIYLRQAEAAWEEL-----C--------CDLTFSLSRL-LDLSNDSFWTS 515 (592)
Q Consensus 480 TIyl~mp~a~WeeL-----~--------~dl~~~v~~L-l~~S~~~FWrt 515 (592)
.|+..+=+++|-|- . +-+.++|++. ....+++||+|
T Consensus 75 ~i~~~~~~~AW~EWR~~~L~~Dei~~E~~~~~~WVN~iT~sKP~S~FW~K 124 (126)
T 3fy6_A 75 EITQNLFQHAWLEWRKGALDNDEVTRELELVAQWVNKVTEAKPNSDFWRK 124 (126)
T ss_dssp TTHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTSCCSHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCcHHHHHh
Confidence 46777777888663 3 3477888887 45578999986
No 8
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=16.78 E-value=66 Score=27.42 Aligned_cols=17 Identities=35% Similarity=0.485 Sum_probs=14.2
Q ss_pred cccccccceEEEecCCC
Q 007712 429 DAQSRTDRIVFKLFGKE 445 (592)
Q Consensus 429 daq~RTgRI~FKLFdK~ 445 (592)
.=.+.||+|-|+|+|..
T Consensus 43 ~l~DeTG~I~~tlW~~~ 59 (106)
T 2k75_A 43 YIEDDTARIRISSFGKQ 59 (106)
T ss_dssp EEECSSCEEEEEEESSC
T ss_pred EEEcCCCeEEEEEEcCc
Confidence 44689999999999865
No 9
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=15.92 E-value=23 Score=34.87 Aligned_cols=37 Identities=16% Similarity=0.310 Sum_probs=27.6
Q ss_pred cchhhhcccchhhhcccceeeeCCchhhhhHhhhcccc
Q 007712 162 AKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHV 199 (592)
Q Consensus 162 ~k~Y~rRhrVCe~H~kA~~V~v~G~~qRFCQQCsrFH~ 199 (592)
+..++++++-|..+-.. ....++...+.|..|+..|-
T Consensus 100 l~~w~~~~~fC~~CG~~-~~~~~~~~~~~C~~C~~~~y 136 (269)
T 1vk6_A 100 LAEFYRSHKYCGYCGHE-MYPSKTEWAMLCSHCRERYY 136 (269)
T ss_dssp HHHHHHTTSBCTTTCCB-EEECSSSSCEEESSSSCEEC
T ss_pred HHhhhhcCCccccCCCc-CccCCCceeeeCCCCCCEec
Confidence 45688899999887654 44567778899999987553
No 10
>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}
Probab=15.84 E-value=1.6e+02 Score=25.47 Aligned_cols=47 Identities=19% Similarity=0.159 Sum_probs=36.7
Q ss_pred ccccceEEEecCCC-----CCC-CcHHHHHHHHHhhcCCCCCCcccccCCcee
Q 007712 432 SRTDRIVFKLFGKE-----PND-FPLVLRAQILDWLSHSPSDMESYIRPGCVI 478 (592)
Q Consensus 432 ~RTgRI~FKLFdK~-----P~d-FP~~LR~QIlnWLS~sPsdmEsYIRPGCvI 478 (592)
++.|+|+++-..-+ ++. =+..|+..|...|...+...+..--.||-|
T Consensus 138 d~~G~i~~~~~~~~~~~~~~g~~~~~~l~~~i~~ll~~~~~~~~~~~~~gC~~ 190 (196)
T 2ywi_A 138 DRDLKCVYRGQLDDSRPNNGIPVTGESIRAALDALLEGRPVPEKQKPSIGCSI 190 (196)
T ss_dssp ETTCBEEEEECSSSCCTTTCCCCCCHHHHHHHHHHHHTCCCCSCCCCCEEEEC
T ss_pred cCCCeEEEccccCcccccccCccCHHHHHHHHHHHHcCCCCCCCCCCCCceee
Confidence 67899999854322 122 356899999999999999999999999976
Done!