Query 007714
Match_columns 592
No_of_seqs 243 out of 1609
Neff 7.3
Searched_HMMs 46136
Date Thu Mar 28 14:20:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007714.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007714hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02265 probable phenylalanyl 100.0 1E-138 3E-143 1162.9 61.9 589 1-592 1-597 (597)
2 KOG2472 Phenylalanyl-tRNA synt 100.0 6E-129 1E-133 1004.0 35.2 573 1-592 1-578 (578)
3 TIGR00471 pheT_arch phenylalan 100.0 1E-118 3E-123 996.2 58.8 546 1-592 1-551 (551)
4 PRK09616 pheT phenylalanyl-tRN 100.0 3E-115 7E-120 969.9 59.3 542 1-592 1-549 (552)
5 CHL00192 syfB phenylalanyl-tRN 100.0 3E-100 6E-105 868.2 45.5 520 5-591 2-594 (704)
6 PRK00629 pheT phenylalanyl-tRN 100.0 5.4E-94 1.2E-98 829.3 49.3 473 60-591 153-683 (791)
7 TIGR00472 pheT_bact phenylalan 100.0 1.2E-93 2.7E-98 827.7 48.8 478 60-591 155-691 (798)
8 COG0072 PheT Phenylalanyl-tRNA 100.0 8.8E-90 1.9E-94 774.3 37.6 486 60-591 12-546 (650)
9 cd00769 PheRS_beta_core Phenyl 100.0 1.4E-40 3E-45 325.4 21.3 183 396-591 3-198 (198)
10 cd00496 PheRS_alpha_core Pheny 100.0 1.4E-35 3E-40 294.2 20.3 185 393-591 1-199 (218)
11 TIGR02367 PylS pyrrolysyl-tRNA 100.0 7.7E-32 1.7E-36 283.7 20.2 202 372-591 208-426 (453)
12 TIGR00468 pheS phenylalanyl-tR 100.0 3.4E-31 7.4E-36 273.3 22.0 191 391-591 70-268 (294)
13 PF01409 tRNA-synt_2d: tRNA sy 100.0 9.9E-29 2.2E-33 248.1 17.3 192 391-591 15-223 (247)
14 PRK06253 O-phosphoseryl-tRNA s 99.9 8.1E-26 1.7E-30 241.8 20.0 188 391-591 45-328 (529)
15 PRK09537 pylS pyrolysyl-tRNA s 99.9 2.9E-25 6.4E-30 235.1 18.8 183 391-591 202-390 (417)
16 PRK04172 pheS phenylalanyl-tRN 99.9 2.8E-22 6.1E-27 221.1 20.2 191 391-591 231-464 (489)
17 cd00768 class_II_aaRS-like_cor 99.9 1.8E-22 4E-27 197.7 16.0 171 396-578 3-188 (211)
18 TIGR00470 sepS O-phosphoseryl- 99.9 5.4E-22 1.2E-26 208.6 19.5 193 391-591 45-327 (533)
19 PF03483 B3_4: B3/4 domain; I 99.9 4.3E-22 9.3E-27 190.7 9.5 135 119-281 1-174 (174)
20 PRK00488 pheS phenylalanyl-tRN 99.8 9.3E-20 2E-24 188.6 21.7 186 391-591 106-315 (339)
21 PF03484 B5: tRNA synthetase B 99.8 1.3E-20 2.9E-25 152.9 7.1 70 306-379 1-70 (70)
22 smart00874 B5 tRNA synthetase 99.8 2.1E-19 4.5E-24 146.6 8.3 70 307-379 2-71 (71)
23 PLN02788 phenylalanine-tRNA sy 99.7 2.1E-15 4.7E-20 159.8 21.1 182 391-591 66-274 (402)
24 smart00873 B3_4 B3/4 domain. T 99.6 1.8E-15 3.9E-20 144.7 9.2 143 120-280 1-173 (174)
25 COG0016 PheS Phenylalanyl-tRNA 99.6 1.2E-13 2.7E-18 142.5 20.0 210 372-591 86-312 (335)
26 PLN02853 Probable phenylalanyl 99.6 2.4E-13 5.1E-18 146.6 20.8 193 391-591 219-459 (492)
27 PTZ00326 phenylalanyl-tRNA syn 99.5 6.5E-13 1.4E-17 144.0 20.9 193 391-591 227-474 (494)
28 COG0072 PheT Phenylalanyl-tRNA 99.3 8.3E-14 1.8E-18 158.3 -1.9 217 1-255 1-220 (650)
29 TIGR00469 pheS_mito phenylalan 99.2 6.5E-10 1.4E-14 119.2 18.5 196 391-591 40-325 (460)
30 COG3382 Solo B3/4 domain (OB-f 98.7 1.9E-07 4.1E-12 91.3 11.8 120 139-282 82-218 (229)
31 COG2024 Phenylalanyl-tRNA synt 98.6 8.8E-08 1.9E-12 98.5 8.1 191 391-589 45-333 (536)
32 KOG2784 Phenylalanyl-tRNA synt 98.6 3.7E-07 8.1E-12 93.6 11.5 189 387-588 206-445 (483)
33 smart00874 B5 tRNA synthetase 98.4 6.6E-07 1.4E-11 72.7 7.5 70 1-90 1-70 (71)
34 PF03484 B5: tRNA synthetase B 97.8 8E-05 1.7E-09 60.4 7.2 67 3-90 3-69 (70)
35 PF00587 tRNA-synt_2b: tRNA sy 97.7 0.00015 3.2E-09 69.3 8.8 130 396-526 3-145 (173)
36 PRK00037 hisS histidyl-tRNA sy 97.6 0.00056 1.2E-08 74.5 12.4 132 392-526 18-154 (412)
37 cd00773 HisRS-like_core Class 97.6 0.0014 3E-08 66.9 14.6 130 395-526 5-138 (261)
38 TIGR00442 hisS histidyl-tRNA s 97.4 0.002 4.4E-08 69.8 13.8 134 392-526 14-153 (397)
39 PRK12421 ATP phosphoribosyltra 97.4 0.0032 6.9E-08 68.3 14.7 131 394-526 23-157 (392)
40 PF13393 tRNA-synt_His: Histid 97.2 0.0056 1.2E-07 64.0 14.3 129 395-526 13-145 (311)
41 cd00670 Gly_His_Pro_Ser_Thr_tR 97.2 0.0043 9.3E-08 61.9 12.1 131 395-526 5-149 (235)
42 CHL00201 syh histidine-tRNA sy 97.0 0.011 2.3E-07 65.0 14.6 132 395-527 21-159 (430)
43 PRK12292 hisZ ATP phosphoribos 97.0 0.012 2.7E-07 63.7 13.9 131 395-526 20-154 (391)
44 PLN02530 histidine-tRNA ligase 96.9 0.0093 2E-07 66.5 12.7 130 394-526 86-220 (487)
45 TIGR00443 hisZ_biosyn_reg ATP 96.8 0.018 3.9E-07 60.5 13.6 128 395-526 11-143 (314)
46 PRK12420 histidyl-tRNA synthet 96.7 0.018 4E-07 63.0 13.3 131 394-526 20-155 (423)
47 PRK12293 hisZ ATP phosphoribos 96.6 0.021 4.6E-07 59.0 12.0 119 395-526 22-142 (281)
48 cd00779 ProRS_core_prok Prolyl 96.5 0.046 9.9E-07 55.7 13.4 131 394-526 33-175 (255)
49 PRK12295 hisZ ATP phosphoribos 96.4 0.073 1.6E-06 57.3 15.1 127 394-526 6-136 (373)
50 cd00771 ThrRS_core Threonyl-tR 96.3 0.089 1.9E-06 54.9 14.5 131 394-527 32-174 (298)
51 PRK09194 prolyl-tRNA synthetas 96.2 0.12 2.6E-06 58.8 15.8 133 393-527 48-192 (565)
52 TIGR00409 proS_fam_II prolyl-t 96.1 0.088 1.9E-06 59.8 13.9 130 393-527 48-192 (568)
53 cd00772 ProRS_core Prolyl-tRNA 96.1 0.12 2.7E-06 52.9 13.8 133 393-526 33-182 (264)
54 PLN02972 Histidyl-tRNA synthet 95.9 0.12 2.7E-06 59.9 14.3 126 395-526 344-474 (763)
55 PRK12305 thrS threonyl-tRNA sy 95.9 0.064 1.4E-06 61.2 11.9 131 394-526 208-350 (575)
56 cd00770 SerRS_core Seryl-tRNA 95.9 0.061 1.3E-06 56.1 10.7 129 394-527 54-197 (297)
57 PRK00413 thrS threonyl-tRNA sy 95.8 0.075 1.6E-06 61.4 12.5 131 394-526 272-414 (638)
58 TIGR00418 thrS threonyl-tRNA s 95.8 0.11 2.5E-06 59.0 13.3 132 394-527 202-345 (563)
59 COG0124 HisS Histidyl-tRNA syn 95.6 0.15 3.3E-06 55.6 12.8 132 395-527 21-158 (429)
60 PLN02908 threonyl-tRNA synthet 95.5 0.097 2.1E-06 60.9 11.8 184 314-526 263-464 (686)
61 PRK12444 threonyl-tRNA synthet 95.2 0.15 3.3E-06 58.8 12.0 184 315-526 217-417 (639)
62 cd00778 ProRS_core_arch_euk Pr 95.2 0.2 4.4E-06 51.2 11.6 156 370-526 6-182 (261)
63 PRK12325 prolyl-tRNA synthetas 95.1 0.09 1.9E-06 57.9 9.5 134 392-527 47-192 (439)
64 PRK14799 thrS threonyl-tRNA sy 95.1 0.12 2.5E-06 58.5 10.4 145 315-488 110-265 (545)
65 cd00669 Asp_Lys_Asn_RS_core As 95.1 0.23 5.1E-06 51.0 11.8 114 395-523 4-118 (269)
66 TIGR00471 pheT_arch phenylalan 94.8 0.079 1.7E-06 60.1 7.9 70 2-93 278-347 (551)
67 PRK00960 seryl-tRNA synthetase 94.6 0.23 4.9E-06 55.5 10.8 146 396-550 227-412 (517)
68 PRK09616 pheT phenylalanyl-tRN 94.2 0.12 2.7E-06 58.5 7.7 70 2-93 275-344 (552)
69 PRK00629 pheT phenylalanyl-tRN 94.1 0.12 2.6E-06 61.2 7.7 72 2-94 401-472 (791)
70 TIGR00415 serS_MJ seryl-tRNA s 93.9 0.91 2E-05 50.4 13.4 145 398-551 229-413 (520)
71 PLN02678 seryl-tRNA synthetase 93.8 0.7 1.5E-05 50.9 12.3 127 395-527 177-323 (448)
72 PLN02265 probable phenylalanyl 93.4 0.17 3.7E-06 57.9 7.1 71 3-92 311-381 (597)
73 cd00774 GlyRS-like_core Glycyl 92.8 0.56 1.2E-05 47.8 9.2 125 393-527 33-169 (254)
74 TIGR00472 pheT_bact phenylalan 92.6 0.27 5.8E-06 58.4 7.5 69 2-92 406-474 (798)
75 PRK09350 poxB regulator PoxA; 92.6 0.47 1E-05 49.7 8.5 112 396-521 9-125 (306)
76 PRK12294 hisZ ATP phosphoribos 92.5 1.3 2.8E-05 45.7 11.3 120 394-525 9-131 (272)
77 TIGR00414 serS seryl-tRNA synt 92.5 1.4 3E-05 48.3 12.2 129 395-527 176-318 (418)
78 PF00152 tRNA-synt_2: tRNA syn 92.4 1.1 2.4E-05 47.4 11.3 111 396-521 26-141 (335)
79 CHL00192 syfB phenylalanyl-tRN 92.0 0.4 8.7E-06 56.0 7.9 72 2-93 303-383 (704)
80 PRK05431 seryl-tRNA synthetase 91.4 2 4.4E-05 47.1 12.1 129 395-527 173-316 (425)
81 PRK06462 asparagine synthetase 91.3 1.5 3.2E-05 46.6 10.6 116 396-522 34-153 (335)
82 PRK08661 prolyl-tRNA synthetas 90.8 3.4 7.4E-05 46.1 13.3 133 393-526 45-193 (477)
83 cd00777 AspRS_core Asp tRNA sy 89.8 3.4 7.4E-05 42.8 11.4 112 395-521 4-116 (280)
84 cd00775 LysRS_core Lys_tRNA sy 89.7 3.3 7.1E-05 43.9 11.5 110 396-522 12-124 (329)
85 PTZ00417 lysine-tRNA ligase; P 89.6 2.1 4.5E-05 48.9 10.3 111 396-522 257-369 (585)
86 smart00873 B3_4 B3/4 domain. T 88.7 0.19 4.2E-06 47.6 1.2 80 159-254 50-142 (174)
87 PRK03991 threonyl-tRNA synthet 87.4 2.3 4.9E-05 48.9 8.9 132 393-526 228-372 (613)
88 PLN02837 threonine-tRNA ligase 87.4 2.3 5E-05 49.0 9.1 186 315-527 189-392 (614)
89 PRK00484 lysS lysyl-tRNA synth 87.1 5.9 0.00013 44.4 11.8 110 396-523 176-289 (491)
90 PTZ00385 lysyl-tRNA synthetase 87.0 5.3 0.00011 46.1 11.4 112 396-523 237-350 (659)
91 TIGR00408 proS_fam_I prolyl-tR 86.8 2.1 4.5E-05 47.7 8.0 134 394-527 40-189 (472)
92 PRK12445 lysyl-tRNA synthetase 86.7 3.7 8E-05 46.1 10.0 110 396-523 188-301 (505)
93 TIGR00462 genX lysyl-tRNA synt 86.5 1.6 3.5E-05 45.7 6.7 113 395-521 4-120 (304)
94 TIGR00499 lysS_bact lysyl-tRNA 86.3 3.1 6.8E-05 46.6 9.2 110 396-523 176-289 (496)
95 PF11734 TilS_C: TilS substrat 85.1 2.7 5.9E-05 34.2 6.0 68 177-255 5-72 (74)
96 PRK03932 asnC asparaginyl-tRNA 84.5 7.1 0.00015 43.3 10.8 112 395-522 136-256 (450)
97 cd00776 AsxRS_core Asx tRNA sy 83.5 7.3 0.00016 41.1 9.9 110 395-521 27-138 (322)
98 PRK12820 bifunctional aspartyl 83.2 8.6 0.00019 44.8 11.0 112 395-521 159-271 (706)
99 PLN02502 lysyl-tRNA synthetase 82.3 6.6 0.00014 44.6 9.5 111 396-522 233-345 (553)
100 PLN02850 aspartate-tRNA ligase 81.1 7.1 0.00015 44.1 9.2 110 396-521 229-340 (530)
101 KOG1936 Histidyl-tRNA syntheta 79.4 15 0.00034 39.8 10.4 157 364-527 28-210 (518)
102 PRK04173 glycyl-tRNA synthetas 78.8 23 0.00049 39.3 12.2 82 446-527 157-248 (456)
103 PLN02320 seryl-tRNA synthetase 78.1 14 0.0003 41.4 10.0 127 396-527 237-379 (502)
104 TIGR00459 aspS_bact aspartyl-t 77.8 21 0.00046 40.8 11.7 113 395-522 141-254 (583)
105 PRK05159 aspC aspartyl-tRNA sy 77.3 19 0.00042 39.6 11.1 109 396-520 140-250 (437)
106 TIGR00458 aspS_arch aspartyl-t 77.1 18 0.00039 39.8 10.6 109 396-521 137-247 (428)
107 PRK00476 aspS aspartyl-tRNA sy 74.4 25 0.00054 40.3 11.2 112 396-522 145-257 (588)
108 COG1190 LysU Lysyl-tRNA synthe 72.4 4.3 9.3E-05 44.8 4.2 114 396-524 184-298 (502)
109 PRK02983 lysS lysyl-tRNA synth 71.6 14 0.0003 45.5 8.7 110 397-523 775-887 (1094)
110 TIGR00457 asnS asparaginyl-tRN 71.6 26 0.00057 38.8 10.2 110 396-521 140-258 (453)
111 PLN02903 aminoacyl-tRNA ligase 68.9 39 0.00084 39.2 11.0 113 395-522 206-320 (652)
112 COG3705 HisZ ATP phosphoribosy 68.4 25 0.00053 38.1 8.8 129 393-526 18-151 (390)
113 PTZ00401 aspartyl-tRNA synthet 68.0 25 0.00054 40.0 9.2 110 396-521 217-328 (550)
114 PF13592 HTH_33: Winged helix- 64.1 5.8 0.00013 30.9 2.4 28 314-341 12-39 (60)
115 COG0441 ThrS Threonyl-tRNA syn 60.9 23 0.00051 40.4 7.3 95 391-487 219-316 (589)
116 PF09840 DUF2067: Uncharacteri 60.6 59 0.0013 31.7 9.1 102 246-378 29-130 (190)
117 PLN02221 asparaginyl-tRNA synt 52.9 69 0.0015 36.7 9.3 28 396-423 175-202 (572)
118 KOG2472 Phenylalanyl-tRNA synt 47.9 30 0.00065 38.3 5.2 65 5-90 310-374 (578)
119 KOG0556 Aspartyl-tRNA syntheta 47.5 34 0.00074 37.0 5.4 76 396-486 232-308 (533)
120 COG0172 SerS Seryl-tRNA synthe 47.2 2.1E+02 0.0045 31.6 11.5 125 394-527 172-319 (429)
121 PTZ00425 asparagine-tRNA ligas 38.9 3.1E+02 0.0068 31.5 11.7 28 396-423 219-246 (586)
122 PLN02603 asparaginyl-tRNA synt 36.7 2.9E+02 0.0063 31.7 11.1 29 395-423 229-257 (565)
123 TIGR00268 conserved hypothetic 31.4 71 0.0015 32.3 4.8 90 322-414 142-242 (252)
124 KOG2509 Seryl-tRNA synthetase 31.0 3.2E+02 0.0068 30.1 9.5 156 369-527 153-332 (455)
125 KOG2324 Prolyl-tRNA synthetase 28.0 2.9E+02 0.0064 29.7 8.4 121 391-528 51-199 (457)
126 COG0017 AsnS Aspartyl/asparagi 26.4 4E+02 0.0087 29.4 9.6 77 395-487 137-214 (435)
127 COG0481 LepA Membrane GTPase L 24.0 1.3E+02 0.0027 33.7 5.1 125 439-589 242-382 (603)
128 COG2269 Truncated, possibly in 22.5 2.4E+02 0.0051 29.4 6.4 84 394-486 18-103 (322)
No 1
>PLN02265 probable phenylalanyl-tRNA synthetase beta chain
Probab=100.00 E-value=1.3e-138 Score=1162.86 Aligned_cols=589 Identities=78% Similarity=1.259 Sum_probs=529.3
Q ss_pred CCeEEechHHHHHHhCCCCCHHHHHHHhhhcCCcccccchhHHHHhhhccccc---cCCCCCCceEEEEecCCCcccccC
Q 007714 1 MPTVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDE---EGDENDEEVIYKIEVPANRYDLLC 77 (592)
Q Consensus 1 Mp~i~~~~~~l~~~~g~~~~~~e~~~~l~~~g~e~e~~~~~~~~~~~~~~~~~---~~~~~~~d~i~~ieit~NR~Dlls 77 (592)
||||+|++++|++++|+++|++||+++||+||+|+|++++|++++++|+|.++ ++.+.++|.+++||+|||||||||
T Consensus 1 MP~i~~~~~~l~~~~g~~~~~~~~~~~~~~~g~e~d~~~~e~~~~~~~~~~~~~~~~~~~~~~d~i~eieitpNR~Dlls 80 (597)
T PLN02265 1 MPTVSVGRDRLFAALGRTYTQEEFDELCFEFGIELDDVTTEKAIIRKEKHLDEEEDGGADDDEEVIYKIDVPANRYDLLC 80 (597)
T ss_pred CCEEEEcHHHHHHHhCCCCCHHHHHHHHHHhCceeccccccccccccccccccccccccccCCceEEEEEeCCCcHHHhh
Confidence 99999999999999999999999999999999999999888778788877765 335668999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCceeecCCCCCCcceEEEeecCCCCCCeEEEEEEeccccCcCCcCCHHHHHHHHHhcCCCCCc
Q 007714 78 LEGIAQALRVFNKQQEIPKYTLSDVSKDSMLQMHVKPETSSIRPYVVCAVLRDISFDEASYNSFIDLQDKLHQNICRRRT 157 (592)
Q Consensus 78 ~~GiARel~a~~g~~~~p~~~~~~~~~~~~~~i~V~~~~~~~rp~~~~~vi~~V~~~~~~~~s~~~lq~kL~~~~~r~r~ 157 (592)
++||||+|++++|....|.|.+.........++.|+.++.+.||||+|+++|||++++++|+||+|||+|||++++|+|+
T Consensus 81 ~~GiARel~a~~g~~~~p~~~~~~~~~~~~~~v~V~~~~~~~rp~~~~~vi~~v~~~~~~~~Sp~~lQerL~~~g~R~r~ 160 (597)
T PLN02265 81 LEGLARALRVFLGTEPIPTYRLAEISKGSILKMHVKPETSLIRPFVVCAVLRGVTFDEARYNSFIDLQDKLHQNICRRRT 160 (597)
T ss_pred HHHHHHHHHHHhCCCCCCccccccCCCCcceEEEEcccccccCceEEEEEEeCcccCccccCCHHHHHHHHHHhcCCcce
Confidence 99999999999997447767553221122345666556678999999999999999999999999999999999999988
Q ss_pred EEEeeeeeccccCCCeEEEecCCCceEEEeCCCcccCChhHHHhhhccccccccccccccCCCceeEEEeCCCCeeecCC
Q 007714 158 LVAIGTHDLDTLQGPFTYEALPPSHINFVPLKQTRDFTADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNRTVLSLPP 237 (592)
Q Consensus 158 ~VdIgn~Dld~i~~p~~y~~~~~~~i~f~~L~~~~~~~~~el~~l~~~~~~l~~y~~i~~~~~~~~vI~D~~~~vlslag 237 (592)
+|||||||+|+|++||.|+++++++++|+||+++++|+++||++.++++++|++|+||+++++.||||+|++|.|+||||
T Consensus 161 ~VdIgn~DldkI~g~i~yr~~~~~~~~f~~Ld~~~e~~~~eil~~~~~~~~L~~Y~~ii~~~~~~~vI~D~~~~vlslag 240 (597)
T PLN02265 161 LVAIGTHDLDTLQGPFTYEALPPEDINFVPLKQTKSFRADELMEFYKSDMKLKKFLHIIENSPVFPVIYDSNRTVLSLPP 240 (597)
T ss_pred EEEEeeccHHHcCCCeEEEEcCCCceEEEECCCCCccCHHHHhhhcccCcccccccccccCCCCceEEEeCCCCEEEeCC
Confidence 99999999999999999999999878999999999999999999999999999999999999999999999986799999
Q ss_pred cccCCcceeecCCeEEEEEecccChhhHHHHHHHHHHHHHHhcCCceeEeeEEEEeeCCceeeecCCCceEEEeehhHHh
Q 007714 238 IINGAHSAITLKTKNVFIECTATDLTKAKIVLNTMVTIFSEYCKRKYQVEPVEVVYADGRSYVYPDLSAYNMEVSLSYIN 317 (592)
Q Consensus 238 Iigg~~s~It~~T~nI~iE~a~~D~~~~~~al~~~~~~l~~~~~~~~~i~~v~v~~~~g~~~~~p~~~~~~i~l~~~~i~ 317 (592)
||||++|+||++|||||||||++|++++..||++++++|+++|+++|++++|.+++++|..+.+|.+.++.+.++.++|+
T Consensus 241 Iing~~S~It~~TknIfIE~a~~D~~~~~~al~~~~~ll~e~~~~~~~i~~v~v~~~~~~~~~~p~~~~~~i~~~~~~i~ 320 (597)
T PLN02265 241 IINGAHSAITLDTKNVFIECTATDLTKAKIVLNTMVTMFSEYCARKFEVEPVEVVYPDGKSTVYPDLSVRTMEVDLSYIN 320 (597)
T ss_pred eeCCCccEecCCCcEEEEEEeccCHHHHHHHHHHHHHHHHHhcCCCceEEEEEEEccCCceEeccCCcCceEEeeHHHHH
Confidence 99999999999999999999999999999999999999999999888899988887657777789888899999999999
Q ss_pred hccCCcCCHHHHHHHHHhcCCeEEEcC-CCCCcceEEEEcCCCCcccCCCchhHhHHHHHhCCCCCCCCCCCCC---CCC
Q 007714 318 HTIGVSLEAEEVTSLLNRMQLHAERSA-SGNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYGYNNIPKRKPASV---KPL 393 (592)
Q Consensus 318 ~~LG~~l~~~~i~~~L~~lg~~~~~~~-~~~~~~~~~V~vP~~R~DI~~~~DliEEIar~yGydni~~~~p~~~---~~~ 393 (592)
++||++|+.++|+++|++|||++...+ ++ +. |.|+||+||+||+|++||||||||+|||||||+++|... ..+
T Consensus 321 ~~lG~~l~~~ei~~iL~~l~~~~~~~~~~~-~~--~~V~vP~~R~DI~~~~DiiEEVar~yGydni~~~~P~~~~~g~~~ 397 (597)
T PLN02265 321 SSIGVSLDAEEVASLLNKMQLQAEQSSDDG-CT--IRVSVPPTRSDILHPCDVAEDVAIAYGYNNIPKRKPKSMTVGKQQ 397 (597)
T ss_pred HHhCCCCCHHHHHHHHHHCCCCeEecccCC-Cc--eEEEcCCccccccchhhhhhhhHheeccccCCccCCCcccCCCCC
Confidence 999999999999999999999986522 11 35 999999999999999999999999999999999988643 678
Q ss_pred hHHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCce-eeCCCcCCcccccccchHHHHHHHHhccCCCCC
Q 007714 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKP 472 (592)
Q Consensus 394 ~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v-i~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~ 472 (592)
+.+++.+++|+.|+++||+|++||+|+|+++++.+++...+++.+| |+||+|+|+++|||||+||||+++++|+|++.|
T Consensus 398 ~~~~~~~~iR~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v~I~NP~s~e~~vlRtSLlPgLL~~l~~N~~~~~p 477 (597)
T PLN02265 398 PLNQFSDLLRAEVAMAGFTEVLTWILCSHKENFAMLNREDDGNSAVIIGNPRSADFEVVRTSLLPGLLKTLGHNKDAPKP 477 (597)
T ss_pred HHHHHHHHHHHHHHHCCceeeeceeeCChHHHHHhhcCCccCCceEEECCCcchhHHHHHHhhHHHHHHHHHHhhcCCCC
Confidence 8999999999999999999999999999988777776543222579 999999999999999999999999999999889
Q ss_pred eeEEEeCcEeecCCCcccccccccEEEEEEeCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEecCCCCccCCceE
Q 007714 473 IKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVIGTPFVPVGDDTGYYIQRSDEPEFLPGRQA 552 (592)
Q Consensus 473 ~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~g~~~~f~~ikg~le~ll~~lgi~~~~~~~~~~~~~~~~~~~~f~pgr~A 552 (592)
+|+||||+||.++.+.+.++++.+++|++++|..++|+++||+|+++|..+|+..........|++++..++.|||||||
T Consensus 478 ~klFEiG~V~~~~~~~~~~~~e~~~la~~~~g~~~~f~~ikg~le~ll~~l~i~~~~~~~~~~~~~~~~~~~~f~pgr~A 557 (597)
T PLN02265 478 IKLFEVSDVVLLDESKDVGARNSRRLAALYCGTTSGFEVIHGLVDRIMEVLGIPFVEIGDNNGYYVEPSNEPEYFPGRQA 557 (597)
T ss_pred eeEEEeEeEEecCCcccCCcchhhEEEEEEECCCCCHhhHHHHHHHHHHHcCCcccccccCceEEEeecCCccccCCceE
Confidence 99999999998875544666899999999999999999999999999999998510000000167788888999999999
Q ss_pred EEEECCEEEEEEEEeCHHHHHhCCCCCCEEEEEEeccccC
Q 007714 553 SITHKGKHVGTFGIVHPEVLNNFDISDPCSFMEIDIENFL 592 (592)
Q Consensus 553 ~I~~~g~~iG~~GelhP~vl~~~~l~~pv~~~El~l~~l~ 592 (592)
+|+++|+.||+||+|||+|+++|||+.||++|||||+.|+
T Consensus 558 ~I~~~g~~iG~iGelhP~vl~~f~l~~pv~~~Eidl~~l~ 597 (597)
T PLN02265 558 SIIYKGKHVGTFGIVHPEVLNNFDIPDPCSFLELDLEPLL 597 (597)
T ss_pred EEEECCeEEEEEEEECHHHHHHCCCCCceEEEEEEhHHhC
Confidence 9999999999999999999999999999999999999875
No 2
>KOG2472 consensus Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.1e-129 Score=1004.02 Aligned_cols=573 Identities=58% Similarity=0.989 Sum_probs=543.0
Q ss_pred CCeEEechHHHHHHhCCCCCHHHHHHHhhhcCCcccccchhHHHHhhhccccccCCCCCCceEEEEecCCCcccccCHHH
Q 007714 1 MPTVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEVPANRYDLLCLEG 80 (592)
Q Consensus 1 Mp~i~~~~~~l~~~~g~~~~~~e~~~~l~~~g~e~e~~~~~~~~~~~~~~~~~~~~~~~~d~i~~ieit~NR~Dlls~~G 80 (592)
||||+|.++.+++++|++||++||+++||.||+|+|+++++++++.++++...++. .++.+.+++++++||+|++|++|
T Consensus 1 MpTI~v~k~~l~~~LGk~yt~~ef~elcfeFgleldeit~e~a~~~ke~~~~~~~g-ane~~~ykidipANrydllC~eg 79 (578)
T KOG2472|consen 1 MPTISVKKDHLFRALGKSYTDREFDELCFEFGLELDEITTEKAFAMKEQGSLVEAG-SNEEVRYKIDIPANRYDLLCLEG 79 (578)
T ss_pred CCceEecHHHHHHHhccccchhhhhhhhhhhccccccchhHHHhhhhhhcchhhcc-CCcceeeehhcccccccccchHH
Confidence 99999999999999999999999999999999999999999999999988876655 77889999999999999999999
Q ss_pred HHHHHHHhcCCCCCCceeecCCCCCCcceEEEeecCCCCCCeEEEEEEeccccC-cCCcCCHHHHHHHHHhcCCCCCcEE
Q 007714 81 IAQALRVFNKQQEIPKYTLSDVSKDSMLQMHVKPETSSIRPYVVCAVLRDISFD-EASYNSFIDLQDKLHQNICRRRTLV 159 (592)
Q Consensus 81 iARel~a~~g~~~~p~~~~~~~~~~~~~~i~V~~~~~~~rp~~~~~vi~~V~~~-~~~~~s~~~lq~kL~~~~~r~r~~V 159 (592)
++++++.|......|.|+..........++.|++++.++|||++|+|+|||+++ +.+|+|+|+||+|||+++||+|.+|
T Consensus 80 l~qalrvf~~~~~~p~yk~~~~s~t~~~k~~v~~~t~qIRP~~v~aVir~v~l~~~dsy~sFIdlQdKLHqnicrnRtLv 159 (578)
T KOG2472|consen 80 LAQALRVFPRETEFPSYKLQDFSSTKRQKLIVKPETSQIRPFAVCAVIRNVSLDPPDSYKSFIDLQDKLHQNICRNRTLV 159 (578)
T ss_pred HHHHHHhccccCCCCcceeeccccccceEEEEcccccccchHHHHHHHhcCccCchhhhHhHHhHHHHHHHHHHhhcccc
Confidence 999999998888899998876543445689999999999999999999999999 7789999999999999999999999
Q ss_pred EeeeeeccccCCCeEEEecCCCceEEEeCCCcccCChhHHHhhhccccccccccccccCCCceeEEEeCCCCeeecCCcc
Q 007714 160 AIGTHDLDTLQGPFTYEALPPSHINFVPLKQTRDFTADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNRTVLSLPPII 239 (592)
Q Consensus 160 dIgn~Dld~i~~p~~y~~~~~~~i~f~~L~~~~~~~~~el~~l~~~~~~l~~y~~i~~~~~~~~vI~D~~~~vlslagIi 239 (592)
+||+||||++.+||.|.+..|++|+|+||++++++++.+++++|..+.++++|+||+++++.||||.|++|.++|+||||
T Consensus 160 AiGTHDLDt~qgPf~Y~Al~peei~f~PLNqtre~~~~eL~~~y~~d~~l~rYlhII~~sPvypvi~Ds~~~V~SlPPIi 239 (578)
T KOG2472|consen 160 AIGTHDLDTIQGPFEYEALPPEEIKFKPLNQTREVTASELMSFYKRDMHLKRYLHIIENSPVYPVIYDSKGVVCSLPPII 239 (578)
T ss_pred ccccccchhccCCeeeeeeChhhcCcccchhhhccccccccccccCccchhhhehhhcCCCccceeeCCCCceEecCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcceeecCCeEEEEEecccChhhHHHHHHHHHHHHHHhcCCceeEeeEEEEeeCCceeeecCCCceEEEeehhHHhhc
Q 007714 240 NGAHSAITLKTKNVFIECTATDLTKAKIVLNTMVTIFSEYCKRKYQVEPVEVVYADGRSYVYPDLSAYNMEVSLSYINHT 319 (592)
Q Consensus 240 gg~~s~It~~T~nI~iE~a~~D~~~~~~al~~~~~~l~~~~~~~~~i~~v~v~~~~g~~~~~p~~~~~~i~l~~~~i~~~ 319 (592)
||++|+||.+|+|||||+|++|..++..+++.++.+++++|..++++++|+|++++|....||.+..+..+++.+++|..
T Consensus 240 Nsd~Skitl~TknIfievTaTd~~ka~ivl~~~v~lfS~~c~~~ftiepveIv~~~G~~~l~P~l~~r~~~~~~~~in~~ 319 (578)
T KOG2472|consen 240 NSDHSKITLNTKNIFIEVTATDFTKAKIVLNTIVTLFSQQCFLKFTIEPVEIVCGEGGSILYPQLANRSMTMSIQAINFA 319 (578)
T ss_pred CcccceeeeccceEEEEeeeccchhhhcccceeeehhhhhhccCccccceEEEcCCCcEEECccccCcceeeehhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999988888999999999999999999999
Q ss_pred cCCcCCHHHHHHHHHhcCCeEEEcCCCCCcceEEEEcCCCCcccCCCchhHhHHHHHhCCCCCCCCCCCCC---CCChHH
Q 007714 320 IGVSLEAEEVTSLLNRMQLHAERSASGNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYGYNNIPKRKPASV---KPLALN 396 (592)
Q Consensus 320 LG~~l~~~~i~~~L~~lg~~~~~~~~~~~~~~~~V~vP~~R~DI~~~~DliEEIar~yGydni~~~~p~~~---~~~~~~ 396 (592)
+|++++.++++.+|+||.++++..++ ++ +.|.||+.|+||.|.|||+||+|++||||||+.++|.++ ++.|.+
T Consensus 320 ~g~~l~~~~~~~~l~RM~L~a~v~~~--~~--l~v~iPptraDIlHaCDI~ED~aIAyGyNNi~~~lP~~~~~~~~~plN 395 (578)
T KOG2472|consen 320 IGLNLTIEEQAYYLTRMYLKAKVIGN--GN--LEVKIPPTRADILHACDIVEDAAIAYGYNNIQMTLPASNTIAKPFPLN 395 (578)
T ss_pred hccCCCHHHHHHHHhhhheeeEecCC--Cc--eEEecCCchhhhhhhhhhhhHHHHHhccccccccCcchhcccCccchH
Confidence 99999999999999999999987764 35 999999999999999999999999999999999999876 889999
Q ss_pred HHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCce-eeCCCcCCcccccccchHHHHHHHHhccCCCCCeeE
Q 007714 397 EFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIKI 475 (592)
Q Consensus 397 ~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v-i~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~~~l 475 (592)
++.+.+|..++.+||+|++||+|||.++ + ..++..+| |.||+|-||+++||||+||||++++.|.+++.|+|+
T Consensus 396 kl~d~lR~e~a~ag~~E~l~~~LcS~de-----~-~~d~~~AV~l~NPkt~efqv~RtsLlPGllKTv~~N~~~~lP~kl 469 (578)
T KOG2472|consen 396 KLTDILRIEVAAAGFTEALTFTLCSRDE-----N-VIDGDKAVHLGNPKTLEFQVVRTSLLPGLLKTVASNRKMPLPIKL 469 (578)
T ss_pred HHHHHHHHHHHHhhhhhheeeeeecccc-----C-CcccccceEecCCCceeeeeehhhhchHHHHHHHhccCCCCceeE
Confidence 9999999999999999999999999987 2 33446789 999999999999999999999999999999999999
Q ss_pred EEeCcEeecCCCcccccccccEEEEEEeCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEecCCCCccCCceEEEE
Q 007714 476 YEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVIGTPFVPVGDDTGYYIQRSDEPEFLPGRQASIT 555 (592)
Q Consensus 476 FEiG~V~~~~~~~~~~~~~~~~l~~~~~g~~~~f~~ikg~le~ll~~lgi~~~~~~~~~~~~~~~~~~~~f~pgr~A~I~ 555 (592)
|||++|+++|.+.+.|++|+||||++++|++++|+.+||.|+.+|+.-.+.. .|+++.++.+ |+|||||.|+
T Consensus 470 FEisDvv~~D~~~e~ga~N~R~l~A~y~g~~~gfE~i~Glld~~l~~~~~~~-------~Y~i~~~~~~-yfpgr~A~v~ 541 (578)
T KOG2472|consen 470 FEISDVVFKDSSTEVGARNERHLAAVYCGKTSGFEIIHGLLDQLLNVPPIRD-------SYYIEADEDP-YFPGRCAKVI 541 (578)
T ss_pred EEeeeEEEecccccccccchheeeeeecCCCccHHHHHHHHHHHhcCCcccc-------ceEEecCcCC-cCCCcceEEE
Confidence 9999999999999999999999999999999999999999998777666543 3888888777 9999999999
Q ss_pred ECCEEEEEEEEeCHHHHHhCCCCCCEEEEEEeccccC
Q 007714 556 HKGKHVGTFGIVHPEVLNNFDISDPCSFMEIDIENFL 592 (592)
Q Consensus 556 ~~g~~iG~~GelhP~vl~~~~l~~pv~~~El~l~~l~ 592 (592)
+.|+.||.+|.+||+|+.+|+++.|++++|||+++++
T Consensus 542 ~~g~~iG~~GvlhPev~~~F~l~~~~s~~Ei~ie~~l 578 (578)
T KOG2472|consen 542 VEGKVIGKIGVLHPEVLTKFELTYPCSAVEIDIEPFL 578 (578)
T ss_pred EcCceeeeecccCHHHHhhcCCCCccceEEeeeEecC
Confidence 9999999999999999999999999999999999875
No 3
>TIGR00471 pheT_arch phenylalanyl-tRNA synthetase, beta subunit. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from eukaryotic cytosol, the Archaea, and spirochetes.
Probab=100.00 E-value=1.3e-118 Score=996.17 Aligned_cols=546 Identities=38% Similarity=0.631 Sum_probs=474.5
Q ss_pred CCeEEechHHHHHHhCCCCCHHHHHHHhhhcCCcccccchhHHHHhhhccccccCCCCCCceEEEEecCCCcccccCHHH
Q 007714 1 MPTVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEVPANRYDLLCLEG 80 (592)
Q Consensus 1 Mp~i~~~~~~l~~~~g~~~~~~e~~~~l~~~g~e~e~~~~~~~~~~~~~~~~~~~~~~~~d~i~~ieit~NR~Dlls~~G 80 (592)
||||++++++|++++ ...+.++|.+.|++.|+|+|+++++ ..+++||+|||||||||++|
T Consensus 1 Mp~i~~~~~~l~~~l-~~~~~~~l~~~l~~~~~eve~~~~~-------------------~~i~eieiTpNR~D~lS~~G 60 (551)
T TIGR00471 1 MPTVTVYKDDLEDLL-IGTDRDEILEELPMMGDEIEGFDEE-------------------SPEIKVEFNPNRPDLLSVEG 60 (551)
T ss_pred CCEEEEcHHHHHHHh-cCCCHHHHHHHhcccccccccccCC-------------------cceEEEEcCCCCchhhhHHH
Confidence 999999999999998 7778899999999999998876432 14799999999999999999
Q ss_pred HHHHHHHhcCC-CCCCceeecCCCCCCcceEEEeecCCCCCCeEEEEEEeccccCcCCcCCHHHHHHHHHhcCCCCCcEE
Q 007714 81 IAQALRVFNKQ-QEIPKYTLSDVSKDSMLQMHVKPETSSIRPYVVCAVLRDISFDEASYNSFIDLQDKLHQNICRRRTLV 159 (592)
Q Consensus 81 iARel~a~~g~-~~~p~~~~~~~~~~~~~~i~V~~~~~~~rp~~~~~vi~~V~~~~~~~~s~~~lq~kL~~~~~r~r~~V 159 (592)
|||||+|++|. ...|.+... .....+.|+..+.+.||||+|++++||++++++++||+|||+|||++++|++|.+
T Consensus 61 iARel~a~~~~~~~~p~~~~~----~~~~~v~v~~~~~~~cp~y~~~vi~gv~~~~~~~~Sp~wlq~rL~~~g~R~in~l 136 (551)
T TIGR00471 61 LARSLRGYLGIEKGLKSYDSK----KGDVKLTVDESVLQIRPFITGAVVKGIILNDKVLESLIELQEKLHWNIGRNRRKV 136 (551)
T ss_pred HHHHHHHHhCCCCCCcceecC----CCceEEEECCcccccCCeEEEEEEeCCccChhHHhhHHHHHHHHHHhhCccccee
Confidence 99999999996 455644311 1123444443223789999999999999998888899999999999999988889
Q ss_pred EeeeeeccccCCCeEEEecCCCceEEEeCCCcccCChhHHHhhhccccccccccccccCCCceeEEEeCCCCeeecCCcc
Q 007714 160 AIGTHDLDTLQGPFTYEALPPSHINFVPLKQTRDFTADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNRTVLSLPPII 239 (592)
Q Consensus 160 dIgn~Dld~i~~p~~y~~~~~~~i~f~~L~~~~~~~~~el~~l~~~~~~l~~y~~i~~~~~~~~vI~D~~~~vlslagIi 239 (592)
+|+.||+|||++|+.|++.++++++|+||++.++++.+++++ +|+++.+|++|+++.+.+|||+|++++|+||||||
T Consensus 137 ~ihafD~dki~~~i~vr~~a~~ge~f~~Ld~~~~L~~~~~~~---~~~~~~~y~~l~~~~~~~~vI~D~~~~~lslaGIm 213 (551)
T TIGR00471 137 AIGIHDLDKVEFPFHYKAVSPNGIKFVPLNSDQEMTPDEILE---EHPKGIRYAHIIEDSDKFPLILDSKDDVLSMPPII 213 (551)
T ss_pred eEEeccHHhCCCCeEEEEECCCCCEEEECCCCCccCHHHHHh---hCcccchhhhhhcCCCceeEEEeCCCCEEeeCCcc
Confidence 999999999999999997777778999999999999999888 89999999999999999999999966799999999
Q ss_pred cCCcceeecCCeEEEEEecccChhhHHHHHHHHHHHHHHhcCCceeEeeEEEEeeCCceeeecCCCceEEEeehhHHhhc
Q 007714 240 NGAHSAITLKTKNVFIECTATDLTKAKIVLNTMVTIFSEYCKRKYQVEPVEVVYADGRSYVYPDLSAYNMEVSLSYINHT 319 (592)
Q Consensus 240 gg~~s~It~~T~nI~iE~a~~D~~~~~~al~~~~~~l~~~~~~~~~i~~v~v~~~~g~~~~~p~~~~~~i~l~~~~i~~~ 319 (592)
||++|+|+++||||||||||+|+..+..|+++++++++++|++.. ....+... +....+|..+++.|+++.++|+++
T Consensus 214 gg~~s~V~~~T~nIllE~Ag~D~~~~~~al~~a~~li~~~~~g~~--~~~~v~~~-~~~~~~p~~~~~~i~~~~~~i~~~ 290 (551)
T TIGR00471 214 NSELTKLTVNTRNLLIDVTGTDKTAVEITLNIACTMFADRGDGRI--TVVEVERP-DEHLGQPNLAPRFMEVSVEYINSL 290 (551)
T ss_pred CCCceEecCCCceEEEEEecCCHHHHHHHHHHHHHHHHHhCCCce--eEEEEEEC-CCcccCCCCccceEEecHHHHHHH
Confidence 999999999999999999999999999999999999999997644 33222221 112234556778999999999999
Q ss_pred cCCcCCHHHHHHHHHhcCCeEEEcCCCCCcceEEEEcCCCCcccCCCchhHhHHHHHhCCCCCCCCCCCCC---CCChHH
Q 007714 320 IGVSLEAEEVTSLLNRMQLHAERSASGNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYGYNNIPKRKPASV---KPLALN 396 (592)
Q Consensus 320 LG~~l~~~~i~~~L~~lg~~~~~~~~~~~~~~~~V~vP~~R~DI~~~~DliEEIar~yGydni~~~~p~~~---~~~~~~ 396 (592)
||++++.++|.++|++|||++...+ +. |.|+||+||.||+|++||||||||+|||||||+++|... ..++.+
T Consensus 291 lG~~l~~~ei~~iL~~Lg~~v~~~~---~~--~~v~vP~~R~DI~~~~DliEEIaR~yGyd~I~~~~p~~~~~~~~~~~~ 365 (551)
T TIGR00471 291 LGLNLSADEIAHSLKKMRLDAVQSD---EK--LKVVIPAYRVDILHEVDIIEDVAIGYGYNNFPPELPLINTIGRLKPLN 365 (551)
T ss_pred hCCCCCHHHHHHHHHHhCCCeEecC---Cc--EEEEcCCCccccCchhHHHHHHHHHhCcccCCccCCCccccCCcChHH
Confidence 9999999999999999999986433 35 999999999999999999999999999999999887632 667788
Q ss_pred HHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCce-eeCCCcCCcccccccchHHHHHHHHhccCCCCCeeE
Q 007714 397 EFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIKI 475 (592)
Q Consensus 397 ~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v-i~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~~~l 475 (592)
++.+++|+.|+++||+|++||+|+|++++++.++... .+.| |.||+|+|+++||+||+||||+++++|+++..++++
T Consensus 366 ~~~~~ir~~L~~~Gf~E~itysf~s~~~~~~~~~~~~--~~~v~l~NPis~e~s~lR~SLlp~LL~~~~~N~~~~~~~~l 443 (551)
T TIGR00471 366 KVSDIIREIMVGLGFQEVIPLTLTSEEVNFKRMRIED--NNDVKVANPKTLEYTIVRTSLLPGLLETLSENKHHELPQKI 443 (551)
T ss_pred HHHHHHHHHHHhCCceeeccceEccHHHHHHHhccCC--CCcEEeCCCCchhhhHhHhhhHHHHHHHHHhcccCCCCeeE
Confidence 9999999999999999999999999987655554332 3468 999999999999999999999999999966678999
Q ss_pred EEeCcEeecCCCcccccccccEEEEEEeCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEecCCCCccCCceEEEE
Q 007714 476 YEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVIGTPFVPVGDDTGYYIQRSDEPEFLPGRQASIT 555 (592)
Q Consensus 476 FEiG~V~~~~~~~~~~~~~~~~l~~~~~g~~~~f~~ikg~le~ll~~lgi~~~~~~~~~~~~~~~~~~~~f~pgr~A~I~ 555 (592)
||||+||.++++.+.+.++..+++++++|..++|+++||+|+++|..+|++ +++.+..++.|||||||.|+
T Consensus 444 FEiG~Vf~~~~~~~~~e~~~~~l~~~~~g~~~df~d~Kg~ve~ll~~l~i~---------~~~~~~~~~~~hpgrsa~I~ 514 (551)
T TIGR00471 444 FEIGDVVVKDDKSETRSRVVTKLAVGITHSEANFNEIKSIVAALARELGIE---------YEIEESEHPSFIPGRGAKIV 514 (551)
T ss_pred EEEEEEEEcCCccccccceeeEEEEEEECCCCCHHHHHHHHHHHHHHcCCc---------eEEeecCCCccCCCceEEEE
Confidence 999999976532222222337999999998899999999999999999986 67778788899999999999
Q ss_pred ECCEEEEEEEEeCHHHHHhCCCCCCEEEEEEeccccC
Q 007714 556 HKGKHVGTFGIVHPEVLNNFDISDPCSFMEIDIENFL 592 (592)
Q Consensus 556 ~~g~~iG~~GelhP~vl~~~~l~~pv~~~El~l~~l~ 592 (592)
++|+.||++|+|||+++++|+|+.||++|||||+.|+
T Consensus 515 ~~g~~iG~iG~ihP~v~~~~~i~~~v~~~Ei~l~~l~ 551 (551)
T TIGR00471 515 FEGKAIGHFGEIHPEVLTNFELEFPVSAFEVNIEVFL 551 (551)
T ss_pred ECCcEEEEEEEECHHHHHhCCCCCceEEEEEEehhcC
Confidence 9999999999999999999999999999999999874
No 4
>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=100.00 E-value=3.3e-115 Score=969.88 Aligned_cols=542 Identities=39% Similarity=0.667 Sum_probs=477.2
Q ss_pred CCeEEechHHHHHHhCCCCCHHHHHHHhhhcCCcccccchhHHHHhhhccccccCCCCCCceEEEEecCCCcccccCHHH
Q 007714 1 MPTVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEVPANRYDLLCLEG 80 (592)
Q Consensus 1 Mp~i~~~~~~l~~~~g~~~~~~e~~~~l~~~g~e~e~~~~~~~~~~~~~~~~~~~~~~~~d~i~~ieit~NR~Dlls~~G 80 (592)
||||++++++|++++|.++++++|.++|+.+|+|+|+. +|+++|||+|||||||||++|
T Consensus 1 mp~~~~~~~~l~~~~~~~~~~~~l~~~l~~~G~e~~~~---------------------~D~ileieiTpNR~D~ls~~G 59 (552)
T PRK09616 1 MPVIRVNKDDLERLIGIDLEDDELEDLLPMLKCEVEEI---------------------EDDEIKIEFNPDRPDLLSVEG 59 (552)
T ss_pred CCEEEEcHHHHHHHHCCCCCHHHHHHHHHHcCCccccC---------------------CCceEEEEcCCCchhhhhHHH
Confidence 99999999999999999999999999999999999842 366999999999999999999
Q ss_pred HHHHHHHhcCCC-CCCceeecCCCCCCcceEEEeecCC--CCCCeEEEEEEeccccCcCCcCCHHHHHHHHHhcCCCCCc
Q 007714 81 IAQALRVFNKQQ-EIPKYTLSDVSKDSMLQMHVKPETS--SIRPYVVCAVLRDISFDEASYNSFIDLQDKLHQNICRRRT 157 (592)
Q Consensus 81 iARel~a~~g~~-~~p~~~~~~~~~~~~~~i~V~~~~~--~~rp~~~~~vi~~V~~~~~~~~s~~~lq~kL~~~~~r~r~ 157 (592)
|||||||++|.. ..|.+.... . .+.|+++.. +.||||+|++++||+++++++++|+|||+|||++.|++|+
T Consensus 60 iARelaa~~~~~~~~p~~~~~~----~--~~~v~v~~~~~~~cp~y~~~~i~~v~v~~s~~~~P~wlq~rL~~~~Gq~r~ 133 (552)
T PRK09616 60 LARALRGFLGIETGLPKYEVKD----S--DVKVEVDEEVPEIRPYIAGAVVRGVKLDDEALKSLIQLQEKLHWTIGRKRK 133 (552)
T ss_pred HHHHHHHHhCCCCCCCceeecC----C--ceEEEECCCccccCCeEEEEEEECCccCHHHHHhHHHHHHHHHHHhccccc
Confidence 999999999963 566554321 1 244444433 7999999999999999987678899999999999998899
Q ss_pred EEEeeeeeccccCCCeEEEecCCCceEEEeCCCcccCChhHHHhhhccccccccccccccCCCceeEEEeCCCCeeecCC
Q 007714 158 LVAIGTHDLDTLQGPFTYEALPPSHINFVPLKQTRDFTADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNRTVLSLPP 237 (592)
Q Consensus 158 ~VdIgn~Dld~i~~p~~y~~~~~~~i~f~~L~~~~~~~~~el~~l~~~~~~l~~y~~i~~~~~~~~vI~D~~~~vlslag 237 (592)
.+.||.||+|+|.+|+.|+..++++ .|+||+++++++++++++ ++.++++|++|+.+.+.++||+|++|+++|+||
T Consensus 134 ~~pi~~~Dldki~~~i~~r~a~~~e-~f~~L~~~~~~~~~e~~~---~~~~~~~y~~L~~~~~~~~vI~D~~~~~lsl~g 209 (552)
T PRK09616 134 KVAIGIHDLDKIKPPIYYKAVDPDE-KFVPLGFDEEMTLREILE---KHPKGKEYGHLLKDFDRYPLIVDSEGNVLSFPP 209 (552)
T ss_pred cceeEeecHHHCCCCeEEEEeCCCC-eEeeCCCCceeCHHHHHh---hCcccceehhhccCCCCcceEEcCCCCEEecCC
Confidence 9999999999999999999988876 599999988899999876 889999999999877778999999987999999
Q ss_pred cccCCcceeecCCeEEEEEecccChhhHHHHHHHHHHHHHHhcCCceeEeeEEEEeeCCceeeecCCCceEEEeehhHHh
Q 007714 238 IINGAHSAITLKTKNVFIECTATDLTKAKIVLNTMVTIFSEYCKRKYQVEPVEVVYADGRSYVYPDLSAYNMEVSLSYIN 317 (592)
Q Consensus 238 Iigg~~s~It~~T~nI~iE~a~~D~~~~~~al~~~~~~l~~~~~~~~~i~~v~v~~~~g~~~~~p~~~~~~i~l~~~~i~ 317 (592)
||||++|+||++||||||||||+|+..+..|+++++.++.++| + ++..+...++ +....+|..+++.|.++.++|+
T Consensus 210 i~~~~~s~vt~~Tkni~lE~ag~d~~~~~~al~~~~~ll~~~~-g--~v~~~~~~~~-~~~~~~~~~~~~~i~l~~~~i~ 285 (552)
T PRK09616 210 IINSELTRVTEGTRNLFIDVTGTDLEAVLLALNIIATALAERG-G--TIESVKVIYP-DGELTTPDLTPRTREVSVEYIN 285 (552)
T ss_pred ccCCCceEEcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHhC-C--EEEEEEEEeC-CCCEeCCCCCceEEEecHHHHH
Confidence 9999999999999999999999999999999999999999997 3 4555444432 2222245456789999999999
Q ss_pred hccCCcCCHHHHHHHHHhcCCeEEEcCCCCCcceEEEEcCCCCcccCCCchhHhHHHHHhCCCCCCCCCCCCC---CCCh
Q 007714 318 HTIGVSLEAEEVTSLLNRMQLHAERSASGNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYGYNNIPKRKPASV---KPLA 394 (592)
Q Consensus 318 ~~LG~~l~~~~i~~~L~~lg~~~~~~~~~~~~~~~~V~vP~~R~DI~~~~DliEEIar~yGydni~~~~p~~~---~~~~ 394 (592)
++||.+++.++|.++|++|||.++..+ +. |.|+||+||+||++++||||||||+|||||||+++|... ..++
T Consensus 286 ~~lG~~i~~~~i~~iL~~Lgf~~~~~~---~~--~~v~vP~~R~DI~~~~DliEEiaR~yGyd~i~~~~p~~~~~~~~~~ 360 (552)
T PRK09616 286 KLLGIDLSAEEIIELLERMRYDAEIGD---DK--VKVTVPPYRVDILHEVDVIEDVAIAYGYNNLEPELPKVFTIGRLHP 360 (552)
T ss_pred HHhCCCCCHHHHHHHHHHcCCCcEecC---Ce--EEEEeCCCcccccccchHHHHHHHHhCcccCCccCCCCccCCCCCh
Confidence 999999999999999999999986543 35 999999999999999999999999999999999988632 5677
Q ss_pred HHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCce-eeCCCcCCcccccccchHHHHHHHHhccCCCCCe
Q 007714 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPI 473 (592)
Q Consensus 395 ~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v-i~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~~ 473 (592)
.+++.+++|+.|+++||+|++||+|+|+++++..++...+ ...+ |.||+|+|+++|||||+||||+++++|+++..++
T Consensus 361 ~~~~~~~ir~~L~~~Gf~Ev~tys~~s~~~~~~~~~~~~~-~~~i~l~NPls~e~svLRtsLlpgLL~~~~~N~~~~~~~ 439 (552)
T PRK09616 361 IEKLERAIRDLMVGLGFQEVMNFTLTSEEVLFEKMNLEPE-EDYVEVLNPISEDYTVVRTSLLPSLLEFLSNNKHREYPQ 439 (552)
T ss_pred HHHHHHHHHHHHHhCCcceeccceEechHHHHHHhCCCCC-CCeEEEcCCCccchheEeccchHHHHHHHHhccCCCCCe
Confidence 8899999999999999999999999999875666544321 1468 9999999999999999999999999999666689
Q ss_pred eEEEeCcEeecCCCcccccccccEEEEEEeCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEecCCCCccCCceEE
Q 007714 474 KIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVIGTPFVPVGDDTGYYIQRSDEPEFLPGRQAS 553 (592)
Q Consensus 474 ~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~g~~~~f~~ikg~le~ll~~lgi~~~~~~~~~~~~~~~~~~~~f~pgr~A~ 553 (592)
++||+|+||.++........+.++++++++|...+|+++||+|+.++..+|++ +++++..+++|||||||.
T Consensus 440 ~lFEiG~Vf~~~~~~~~~~~e~~~l~~~~~g~~~df~dlKg~ve~ll~~lgi~---------~~~~~~~~~~~hPg~sa~ 510 (552)
T PRK09616 440 KIFEIGDVVLIDESTETGTRTERKLAAAIAHSEASFTEIKSVVQALLRELGIE---------YEVEESEHPSFIPGRCAD 510 (552)
T ss_pred eEEEeeEEEecCCccccCcchhhEEEEEEECCCCCHHHHHHHHHHHHHHcCCe---------EEEecCCCCcccCCceEE
Confidence 99999999987543223456888999999999999999999999999999986 677777788899999999
Q ss_pred EEECCEEEEEEEEeCHHHHHhCCCCCCEEEEEEeccccC
Q 007714 554 ITHKGKHVGTFGIVHPEVLNNFDISDPCSFMEIDIENFL 592 (592)
Q Consensus 554 I~~~g~~iG~~GelhP~vl~~~~l~~pv~~~El~l~~l~ 592 (592)
|+++|+.||++|+|||+++++|+|+.||++|||||+.|+
T Consensus 511 I~~~g~~iG~iG~lhP~v~~~~~i~~~v~~~Eidl~~l~ 549 (552)
T PRK09616 511 ILVNGKKIGVIGEIHPEVLENFGIEVPVVAFEIDLEALL 549 (552)
T ss_pred EEECCEEEEEEEEECHHHHHhcCCCCceEEEEEEHHHhh
Confidence 999999999999999999999999999999999998763
No 5
>CHL00192 syfB phenylalanyl-tRNA synthetase beta chain; Provisional
Probab=100.00 E-value=2.8e-100 Score=868.17 Aligned_cols=520 Identities=18% Similarity=0.307 Sum_probs=436.7
Q ss_pred EechHHHHHHhCCC-CCHHHHHHHhhhcCCcccccchhHHHHhhhccccccCCCCCCceEEEEecCCCcccccCHHHHHH
Q 007714 5 SVGRDRLFAALGKS-YTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEVPANRYDLLCLEGIAQ 83 (592)
Q Consensus 5 ~~~~~~l~~~~g~~-~~~~e~~~~l~~~g~e~e~~~~~~~~~~~~~~~~~~~~~~~~d~i~~ieit~NR~Dlls~~GiAR 83 (592)
.|+..||.+.+-.+ .+.+.|.+.|++.|+.++.++++. =+..+|+++||++||||||||||+||||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-------------~~~~~D~iiei~iTpNR~D~lS~~GiAR 68 (704)
T CHL00192 2 KISLKWLKELINLENIDLDTLINKLTLAGFEVEDILSVK-------------IGGESDIILDISSTANRSDVLSIQGLSR 68 (704)
T ss_pred cccHHHHHHhcCcccCCHHHHHhhccCCCccccceeeec-------------cCCCCCEEEEEeCCCChHHHHHhHHHHH
Confidence 36788999999988 999999999999999999887541 1236899999999999999999999999
Q ss_pred HHHHhcCCC--CCCceeecCCCCCCcceEEEeecCC--CCCCeEEEEEEeccccCcCCcCCHHHHHHHHHhcCCC-CCcE
Q 007714 84 ALRVFNKQQ--EIPKYTLSDVSKDSMLQMHVKPETS--SIRPYVVCAVLRDISFDEASYNSFIDLQDKLHQNICR-RRTL 158 (592)
Q Consensus 84 el~a~~g~~--~~p~~~~~~~~~~~~~~i~V~~~~~--~~rp~~~~~vi~~V~~~~~~~~s~~~lq~kL~~~~~r-~r~~ 158 (592)
||||++|.. ..| .. ..........+.|.++.. +.||+|.+++++||++. +||.|||+||.+++.| +|++
T Consensus 69 ElaA~~~~~~~~~p-~~-~~~~~~~~~~~~v~i~~~~~~~c~~y~~~~i~~v~v~----~SP~Wl~~rL~~~Gir~iNni 142 (704)
T CHL00192 69 EISALFNSDPIKLK-YY-NPSISWFDKLKNLISNDSSKLNCSMFIAVIIENIEIK----DSPKWLQNRLSSSGFKSLNNL 142 (704)
T ss_pred HHHHHhCCCcccCC-Cc-ccCccccCCceeEEEecCCccCCCcEEEEEEeCCCCC----CChHHHHHHHHHcCCcCccHH
Confidence 999999843 344 11 111101012244544434 68999999999999998 4899999999999998 5999
Q ss_pred EEeeeeeccccCCC---eEEEecCC----Cce--EEEeCCCcccCChhHHHhhhccccccccccccccCCCceeEEEeCC
Q 007714 159 VAIGTHDLDTLQGP---FTYEALPP----SHI--NFVPLKQTRDFTADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQN 229 (592)
Q Consensus 159 VdIgn~Dld~i~~p---~~y~~~~~----~~i--~f~~L~~~~~~~~~el~~l~~~~~~l~~y~~i~~~~~~~~vI~D~~ 229 (592)
||||||.|..++|| |+++++.+ ++| .++... .++.+.+||+++++|.+ ..+||+|++
T Consensus 143 VDiTNyVmle~GqPlHafD~dki~g~~~~~~i~~~Vr~a~-----~ge~~~~Ld~~e~~L~~---------~~LvI~d~~ 208 (704)
T CHL00192 143 TDIQNYIMLETGQPIEIYDLDKIYSKNTTSSLALSSKFAL-----QKSSFIASNSKNIELEN---------NILVVQANN 208 (704)
T ss_pred HHHHHHHHHHhCCCchhhhHHhhcCCCccCcceeEEEEcC-----CCCEEEeeCCCEEEcCC---------CCEEEEeCC
Confidence 99999999999999 77778875 446 787775 45668899999999975 469999998
Q ss_pred CCeeecCCcccCCcceeecCCeEEEEEec--------------------------ccChhhHHHHHHHHHHHHHHhcCCc
Q 007714 230 RTVLSLPPIINGAHSAITLKTKNVFIECT--------------------------ATDLTKAKIVLNTMVTIFSEYCKRK 283 (592)
Q Consensus 230 ~~vlslagIigg~~s~It~~T~nI~iE~a--------------------------~~D~~~~~~al~~~~~~l~~~~~~~ 283 (592)
+|+||||||||++|+|+++||||||||| |+|+..+..|++++++++.++|++.
T Consensus 209 -k~lalAGVmGg~~S~V~~~T~nIlLEsA~F~p~~Irktsr~l~l~TdaS~RfERgvdp~~~~~al~ra~~Li~e~~gg~ 287 (704)
T CHL00192 209 -VIISIAGIISNEEIICDKNTKSILIEASIFDAAVIRKSSRKLGLRTDRSIRYEKSLKNDNLLEAYYRLVSLLRILNPKL 287 (704)
T ss_pred -ceeeecceecCCcceecCCccEEEEEEEEeCHHHHHHHHHHhCCcchHHhhhhcCCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 4999999999999999999999999999 4577788899999999999998651
Q ss_pred eeEeeEEEEeeCCceeeec-CCCceEEEeehhHHhhccCC-----c---CCHHHHHHHHHhcCCeEEEcCCCCCcceEEE
Q 007714 284 YQVEPVEVVYADGRSYVYP-DLSAYNMEVSLSYINHTIGV-----S---LEAEEVTSLLNRMQLHAERSASGNNQWNINV 354 (592)
Q Consensus 284 ~~i~~v~v~~~~g~~~~~p-~~~~~~i~l~~~~i~~~LG~-----~---l~~~~i~~~L~~lg~~~~~~~~~~~~~~~~V 354 (592)
++.. +..+ ++ ...++.|.++.++|+++||. + ++.++|.++|++|||++....++ +. |.|
T Consensus 288 -~~~~-------~~~~-~~~~~~~~~I~l~~~~i~~iLG~~~~~~~~~~i~~~ei~~iL~~Lgf~v~~~~~~-~~--~~V 355 (704)
T CHL00192 288 -KCKF-------HFIY-KKIKNSSRRIKLSYKKIKDILGPIKINTNTRYLSPKEITNALKRLNFKITYDSLK-LN--WEV 355 (704)
T ss_pred -EEcc-------ceec-CCCCCCCeeEEeCHHHHHHhcCCCcccCccccCCHHHHHHHHHHCCCEEEecCCC-ce--EEE
Confidence 1111 1112 22 23568999999999999998 8 99999999999999998643121 15 999
Q ss_pred EcCCCCc-ccCCCchhHhHHHHHhCCCCCCCCCCCCC---CCChHHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcC
Q 007714 355 LVPPTRS-DVLHPCDVMEDVAIAYGYNNIPKRKPASV---KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLN 430 (592)
Q Consensus 355 ~vP~~R~-DI~~~~DliEEIar~yGydni~~~~p~~~---~~~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~ 430 (592)
+||+||+ ||.+++||||||||+|||||||+++|... ..++.+++.+++|+.|+++||+|++||+|+|++. +
T Consensus 356 ~vP~~R~~DI~~~~DliEEIaRiyGYdnI~~~~p~~~~~~~~~~~~~~~~~ir~~L~~~Gf~Evitysf~s~~~----~- 430 (704)
T CHL00192 356 LIPSYRKDDIVREIDVIEEIARIYGFNNFLSKLPNIKFIGRLDIDYNTRDKIRSYLRNLGLTELIHYSLVKQES----F- 430 (704)
T ss_pred EcCCCCchhcCchhHHHHHHHHhcCcccCcccccccccCCCCCHHHHHHHHHHHHHHhCCCceEecccccChhh----c-
Confidence 9999998 99999999999999999999999888532 6677889999999999999999999999999964 1
Q ss_pred CCCCCCCce-eeCCCcCCcccccccchHHHHHHHHhccCCCC-CeeEEEeCcEeecCCCcccccccccEEEEEEeCC---
Q 007714 431 RQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPK-PIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGA--- 505 (592)
Q Consensus 431 ~~~~~~~~v-i~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~-~~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~g~--- 505 (592)
. ...+ |.||+|+|+++||+||+||||+++++|++|+. ++++||+|+||.++.+ ...+.++++++++|.
T Consensus 431 -~---~~~i~l~NPiS~e~s~lR~SLlpgLL~~~~~N~~r~~~~~rlFEiG~Vf~~~~~---~~~e~~~la~~~~g~~~~ 503 (704)
T CHL00192 431 -S---KNEIKLKNPLIKDYSTLRSSLLPGLIEAVQENLKQGNSTLEGFEIGHVFNLDSS---SIIEETELAGGIFGGIDI 503 (704)
T ss_pred -C---CCcEEEeCCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEeeeeEcCCCc---cccccceEEEEEECCCcC
Confidence 1 2478 99999999999999999999999999999885 6999999999976432 135778999998884
Q ss_pred ---------CCCHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEe----cCCCCccCCceEEEEE-CCEEEEEEEEeCHHH
Q 007714 506 ---------NSGFELIHCLVDRIMEVIGTPFVPVGDDTGYYIQR----SDEPEFLPGRQASITH-KGKHVGTFGIVHPEV 571 (592)
Q Consensus 506 ---------~~~f~~ikg~le~ll~~lgi~~~~~~~~~~~~~~~----~~~~~f~pgr~A~I~~-~g~~iG~~GelhP~v 571 (592)
..+|+++||+|+++|..+|++ +++.+ ..+++|||||||+|++ +|+.||++|+|||++
T Consensus 504 ~~~w~~~~~~~dF~d~Kg~le~ll~~l~i~---------~~~~~~~~~~~~~~~hPgrsA~I~~~~g~~iG~iG~lhP~v 574 (704)
T CHL00192 504 RSSWSEKAQSLNWFEAKGIIENFFQKLNLP---------IYWKKYSDLDEKINFHPYCTSEIFLSNGQKIGIFGQLHPLL 574 (704)
T ss_pred ccccCCCCCccCHHHHHHHHHHHHHHCCCc---------EEEEeccccccCcCCCCCcEEEEEEECCcEEEEEEEECHHH
Confidence 358999999999999999986 55555 4568899999999999 789999999999999
Q ss_pred HHhCCCCCCEEEEEEecccc
Q 007714 572 LNNFDISDPCSFMEIDIENF 591 (592)
Q Consensus 572 l~~~~l~~pv~~~El~l~~l 591 (592)
+++|+|+.||++|||||+.|
T Consensus 575 ~~~~~l~~~v~~~Ei~l~~l 594 (704)
T CHL00192 575 ANKLNLNTEIYLFEINLDIL 594 (704)
T ss_pred HHHcCCCCCeEEEEEEHHHh
Confidence 99999999999999999865
No 6
>PRK00629 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=100.00 E-value=5.4e-94 Score=829.25 Aligned_cols=473 Identities=25% Similarity=0.397 Sum_probs=394.2
Q ss_pred CceEEEEecCCCcccccCHHHHHHHHHHhcCC-CCCCceeecCCCCCCcceEEEeecCCCCCCeEEEEEEeccc-cCcCC
Q 007714 60 EEVIYKIEVPANRYDLLCLEGIAQALRVFNKQ-QEIPKYTLSDVSKDSMLQMHVKPETSSIRPYVVCAVLRDIS-FDEAS 137 (592)
Q Consensus 60 ~d~i~~ieit~NR~Dlls~~GiARel~a~~g~-~~~p~~~~~~~~~~~~~~i~V~~~~~~~rp~~~~~vi~~V~-~~~~~ 137 (592)
+|+++||++|||||||||++||||||||++|. ...|.+...... ....+.|.++..+.||+|.+++++||+ +.
T Consensus 153 ~D~iiei~iTpNR~D~lS~~GiARElaa~~~~~~~~p~~~~~~~~--~~~~~~v~i~~~~~c~~y~~~~i~~v~~~~--- 227 (791)
T PRK00629 153 DDTVIEISLTPNRADCLSVRGIARELAALLGLPLKLPEIEPVPAT--IDDKLPVEIEDPDLCPRYAGRVIKGVKNIA--- 227 (791)
T ss_pred CCeEEEEecCCChHHHHHhHHHHHHHHHhhCCCCCCccccccccc--cCCceEEEecCCCCCccEEEEEEECCCCCC---
Confidence 68999999999999999999999999999986 456653222111 111355655556789999999999999 55
Q ss_pred cCCHHHHHHHHHhcCCC-CCcEEEeee------------eeccccCCCeEEEecCCCceEEEeCCCcccCChhHHHhhhc
Q 007714 138 YNSFIDLQDKLHQNICR-RRTLVAIGT------------HDLDTLQGPFTYEALPPSHINFVPLKQTRDFTADELMEFYK 204 (592)
Q Consensus 138 ~~s~~~lq~kL~~~~~r-~r~~VdIgn------------~Dld~i~~p~~y~~~~~~~i~f~~L~~~~~~~~~el~~l~~ 204 (592)
+||+|||+||++++.| +|++|||+| ||+|++.+++.++...++ .+|++|++
T Consensus 228 -~sp~wlq~rL~~~g~~~in~ivDi~Nyv~l~~G~pi~ayD~dki~~~i~vr~~~~~-e~~~~l~~-------------- 291 (791)
T PRK00629 228 -PSPLWLQERLRAAGIRPINNVVDITNYVMLELGQPLHAFDLDKIGGGIVVRRAKEG-EKLTTLDG-------------- 291 (791)
T ss_pred -CCHHHHHHHHHhCCCCCcCHHHHHHHHHHHHhCCCceeeeHHHcCCceEEEECCCC-CEEEecCC--------------
Confidence 5999999999999888 588999998 566666666666655543 46666653
Q ss_pred cccccccccccccCCCceeEEEeCCCCeeecCCcccCCcceeecCCeEEEEEec--------------------------
Q 007714 205 SDLKLKKYLHIIENSPLYPVLYDQNRTVLSLPPIINGAHSAITLKTKNVFIECT-------------------------- 258 (592)
Q Consensus 205 ~~~~l~~y~~i~~~~~~~~vI~D~~~~vlslagIigg~~s~It~~T~nI~iE~a-------------------------- 258 (592)
+++++. +.++||+|++ +|+|+||||||.+|+|+++|||||||||
T Consensus 292 ~~~~l~---------~~~lvi~d~~-~~lsl~gi~g~~~s~v~~~T~~illE~a~F~p~~Ir~t~r~l~l~t~as~RfeR 361 (791)
T PRK00629 292 KERTLD---------PEDLVIADDK-KPLALAGVMGGEDSEVTENTTNVLLESAYFDPVSIRKTARRLGLRTDASYRFER 361 (791)
T ss_pred ceecCC---------CCcEEEEeCC-CeEEEeeeecCccccccCCCcEEEEEEcccChHHHHHHHHHhCCCchhhhhecc
Confidence 344553 2469999997 5999999999999999999999999999
Q ss_pred ccChhhHHHHHHHHHHHHHHhcCCceeEeeEEEEeeCCceeeecCCCceEEEeehhHHhhccCCcCCHHHHHHHHHhcCC
Q 007714 259 ATDLTKAKIVLNTMVTIFSEYCKRKYQVEPVEVVYADGRSYVYPDLSAYNMEVSLSYINHTIGVSLEAEEVTSLLNRMQL 338 (592)
Q Consensus 259 ~~D~~~~~~al~~~~~~l~~~~~~~~~i~~v~v~~~~g~~~~~p~~~~~~i~l~~~~i~~~LG~~l~~~~i~~~L~~lg~ 338 (592)
|+||..+..|++++++++.+++++ ++.... .+.+|...++.|.++.++|+++||++++.++|.++|++|||
T Consensus 362 Gvdp~~~~~al~~a~~ll~e~~~g--~i~~~~-------~~~~~~~~~~~I~~~~~~i~~ilG~~i~~~~i~~iL~~Lgf 432 (791)
T PRK00629 362 GVDPALTLLALERATALILELGGG--EVVEGV-------VDVYPLPKEPTITLRLERINRLLGTEISDEEIVDILKRLGF 432 (791)
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCC--eEeeee-------EecCCCCCCeEEEecHHHHHHHhCCCCCHHHHHHHHHHCCC
Confidence 567777899999999999999653 232211 12234333789999999999999999999999999999999
Q ss_pred eEEEcCCCCCcceEEEEcCCCCcccCCCchhHhHHHHHhCCCCCCCCCCCC-C---CCChHHHHHHHHHHHHHHCCceEE
Q 007714 339 HAERSASGNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYGYNNIPKRKPAS-V---KPLALNEFSDLMRLEIAMNGFTEV 414 (592)
Q Consensus 339 ~~~~~~~~~~~~~~~V~vP~~R~DI~~~~DliEEIar~yGydni~~~~p~~-~---~~~~~~~~~~~lr~~l~~~Gf~Ev 414 (592)
++...++ +. |.|+||+||+||.+++||||||||+|||||||+++|.. . ..++.+++.+++|+.|+++||+|+
T Consensus 433 ~~~~~~~--~~--~~V~vPs~R~DI~~~~DliEEI~RiyGyd~i~~~~p~~~~~~~~~~~~~~~~~~ir~~L~~~Gf~Ev 508 (791)
T PRK00629 433 EVTEVDG--DG--LTVTVPSWRFDIEIEEDLVEEVARIYGYDNIPSTPPVAALTMGGLTEAQRLLRRLRRALAALGYQEV 508 (791)
T ss_pred EEEecCC--Ce--EEEECCCCccccCcccHHHHHHHHHhCcccCcCcCCCcccCCCCCCHHHHHHHHHHHHHHHCCCcEE
Confidence 9975431 25 99999999999999999999999999999999998862 2 567788899999999999999999
Q ss_pred eeccccChHHHHHHcCCCCCCCCce-eeCCCcCCcccccccchHHHHHHHHhccCCCC-CeeEEEeCcEeecCCCccccc
Q 007714 415 LTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPK-PIKIYEVGDVVLLDEKKDVGA 492 (592)
Q Consensus 415 ~t~sl~s~~~~~~~~~~~~~~~~~v-i~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~-~~~lFEiG~V~~~~~~~~~~~ 492 (592)
+||+|+|++++.. ++.. ...+ |.||+|+|+++||+||+||||+++++|++++. ++++||+|+||..+. ...
T Consensus 509 ~tysf~~~~~~~~-~~~~---~~~i~l~NPis~e~~~lR~SLlp~LL~~~~~N~~~~~~~i~lFEiG~Vf~~~~---~~~ 581 (791)
T PRK00629 509 ITYSFVSPEDAKL-FGLN---PEPLLLLNPISEELSVMRTSLLPGLLEAVAYNLNRGNKDVALFEIGRVFLPDG---DLP 581 (791)
T ss_pred eccccCCHHHHHh-cCCC---CCeEEEeCCCchHHHHHHHhhHHHHHHHHHHHHhCCCCCEeEEeeeeeeCCCC---CCC
Confidence 9999999987543 4322 2468 99999999999999999999999999999875 699999999997642 234
Q ss_pred ccccEEEEEEeCCC----------CCHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEe-cCCCCccCCceEEEEECCEEE
Q 007714 493 SCRRRLAALYCGAN----------SGFELIHCLVDRIMEVIGTPFVPVGDDTGYYIQR-SDEPEFLPGRQASITHKGKHV 561 (592)
Q Consensus 493 ~~~~~l~~~~~g~~----------~~f~~ikg~le~ll~~lgi~~~~~~~~~~~~~~~-~~~~~f~pgr~A~I~~~g~~i 561 (592)
++.+++|++++|.. .+|+++||+++++|..+|++. +++.+ ..++.|||||||.|+++|+.|
T Consensus 582 ~e~~~la~~~~g~~~~~~w~~~~~~df~~~Kg~le~ll~~l~~~~--------~~~~~~~~~~~~hPg~sA~I~~~g~~i 653 (791)
T PRK00629 582 REPEHLAGVLTGNRVEESWGGKRPVDFFDLKGDVEALLEALGLPE--------VEFVAEFEAAALHPGRSAEIYLDGKVI 653 (791)
T ss_pred cchhEEEEEEECCCccccccccCCCCHHHHHHHHHHHHHHcCCCc--------eeEeecCCCcCcCCceEEEEEECCEEE
Confidence 68889999999952 699999999999999999862 56666 677889999999999999999
Q ss_pred EEEEEeCHHHHHhCCCCCCEEEEEEecccc
Q 007714 562 GTFGIVHPEVLNNFDISDPCSFMEIDIENF 591 (592)
Q Consensus 562 G~~GelhP~vl~~~~l~~pv~~~El~l~~l 591 (592)
|++|+|||+++++|+|+.|+|+|||||+.|
T Consensus 654 G~iG~lhP~v~~~~~l~~~v~~~Ei~l~~l 683 (791)
T PRK00629 654 GFIGELHPKVLKKLDLPGRTYVFELDLDAL 683 (791)
T ss_pred EEEEEECHHHHHHcCCCCCEEEEEEEHHHh
Confidence 999999999999999999999999999865
No 7
>TIGR00472 pheT_bact phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from Bacteria other than spirochetes, as well as a chloroplast-encoded form from Porphyra purpurea. The chloroplast-derived sequence is considerably shorter at the amino end, however.
Probab=100.00 E-value=1.2e-93 Score=827.66 Aligned_cols=478 Identities=25% Similarity=0.402 Sum_probs=389.8
Q ss_pred CceEEEEecCCCcccccCHHHHHHHHHHhcCC-CCCCceeecCCCCCCcceEEEeecCCCCCCeEEEEEEeccccCcCCc
Q 007714 60 EEVIYKIEVPANRYDLLCLEGIAQALRVFNKQ-QEIPKYTLSDVSKDSMLQMHVKPETSSIRPYVVCAVLRDISFDEASY 138 (592)
Q Consensus 60 ~d~i~~ieit~NR~Dlls~~GiARel~a~~g~-~~~p~~~~~~~~~~~~~~i~V~~~~~~~rp~~~~~vi~~V~~~~~~~ 138 (592)
+|+++||++|||||||||++||||||||++|. ...|.+............+.|.++..+.||||++++++||++++
T Consensus 155 ~D~i~ei~itpNR~D~lS~~GiARelaa~~~~~l~~~~~~~~~~~~~~~~~~~v~v~~~~~c~~y~~~~i~~v~~~~--- 231 (798)
T TIGR00472 155 DDDIIEVSITPNRGDCLSILGIARELAALFDLPLETPVPFEPETTETIDEGFKIEIEDPEVCPFYLGRVIKGVKVKP--- 231 (798)
T ss_pred CCeEEEEecCCChHHHHHhHHHHHHHHHhhCCCCCCccccccccccccCCceEEEecCCCCCccEEEEEEeCCCCCC---
Confidence 58999999999999999999999999999996 35554433211101112355665556789999999999999985
Q ss_pred CCHHHHHHHHHhcCCC-CCcEEEeee------------eeccccCCCeEE-EecCCCceEEEeCCCcccCChhHHHhhhc
Q 007714 139 NSFIDLQDKLHQNICR-RRTLVAIGT------------HDLDTLQGPFTY-EALPPSHINFVPLKQTRDFTADELMEFYK 204 (592)
Q Consensus 139 ~s~~~lq~kL~~~~~r-~r~~VdIgn------------~Dld~i~~p~~y-~~~~~~~i~f~~L~~~~~~~~~el~~l~~ 204 (592)
||+|||+||+++++| +|++|||+| ||+|++.+++.+ +... ++.+|+||++
T Consensus 232 -sp~wl~~~L~~~g~~~iN~ivDi~Nyv~l~~g~pih~yD~dki~~~~~~vr~~~-~~e~~~~L~~-------------- 295 (798)
T TIGR00472 232 -SPLWLKERLRRSGIRPINNIVDITNYVMLELGQPLHAFDADKIEGSNIEVRSAK-EGESFTTLDG-------------- 295 (798)
T ss_pred -ChHHHHHHHHHcCCCCccHHHHHHHHHHHHhCccceeeeHhHcCCCeEEEEEcC-CCCEEEccCC--------------
Confidence 899999999999888 599999998 566666666544 3333 2346666654
Q ss_pred cccccccccccccCCCceeEEEeCCCCeeecCCcccCCcceeecCCeEEEEEec--------------------------
Q 007714 205 SDLKLKKYLHIIENSPLYPVLYDQNRTVLSLPPIINGAHSAITLKTKNVFIECT-------------------------- 258 (592)
Q Consensus 205 ~~~~l~~y~~i~~~~~~~~vI~D~~~~vlslagIigg~~s~It~~T~nI~iE~a-------------------------- 258 (592)
+++.+. +..+||+|++ +++|+||||||++|+|+++|||||||+|
T Consensus 296 ~~~~l~---------~~~lvi~d~~-~~lsi~gi~~~~~s~i~~~T~~i~le~a~f~~~~ir~t~~~l~l~t~as~Rfer 365 (798)
T TIGR00472 296 KERELK---------KGDLVIADDK-KPLAIAGVMGGKESGVTDTTTNIFLESAYFNPERIRKTARRLGISTDSSYRFER 365 (798)
T ss_pred eEEecC---------CCcEEEEECC-ceEEEeeeecCccccccCCccEEEEEEEeeCHHHHHHHHHHhCCCchhhhhhhc
Confidence 344443 2459999999 5999999999999999999999999999
Q ss_pred ccChhhHHHHHHHHHHHHHHhcCCceeEeeEEEEeeCCceeeecCCCceEEEeehhHHhhccCCcCCHHHHHHHHHhcCC
Q 007714 259 ATDLTKAKIVLNTMVTIFSEYCKRKYQVEPVEVVYADGRSYVYPDLSAYNMEVSLSYINHTIGVSLEAEEVTSLLNRMQL 338 (592)
Q Consensus 259 ~~D~~~~~~al~~~~~~l~~~~~~~~~i~~v~v~~~~g~~~~~p~~~~~~i~l~~~~i~~~LG~~l~~~~i~~~L~~lg~ 338 (592)
|+|+..+..|+++++++|.++|++. +..+.+.. ..|..+++.|.++.++|+++||++++.++|.++|++|||
T Consensus 366 Gvd~~~~~~al~~~~~ll~e~~~~~--~~~~~~~~------~~~~~~~~~i~~~~~~i~~~lG~~i~~~ei~~iL~~Lgf 437 (798)
T TIGR00472 366 GVDPELTELALDRALNLILEIFGGE--VISVVSDV------YKEKAKEKKISLRIKKLNKILGISLSDEEVRDILKRLGF 437 (798)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCCe--ecceeeec------cCCCCCCeEEEecHHHHHHHhCCccCHHHHHHHHHHCCC
Confidence 5566777999999999999998753 32221111 134567789999999999999999999999999999999
Q ss_pred eEEEcCCCCCcceEEEEcCCCCcccCCCchhHhHHHHHhCCCCCCCCCCCCC---CCC-hHHHHHHHHHHHHHHCCceEE
Q 007714 339 HAERSASGNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYGYNNIPKRKPASV---KPL-ALNEFSDLMRLEIAMNGFTEV 414 (592)
Q Consensus 339 ~~~~~~~~~~~~~~~V~vP~~R~DI~~~~DliEEIar~yGydni~~~~p~~~---~~~-~~~~~~~~lr~~l~~~Gf~Ev 414 (592)
++...+ +. |.|+||+||+||+|++||||||||+|||||||+++|... ... ..+...+++|+.|+++||+|+
T Consensus 438 ~~~~~~---~~--~~V~vP~~R~DI~~~~DliEEI~R~yGydni~~~~p~~~~~~~~~~~~~~~~~~~r~~L~~~Gf~Ev 512 (798)
T TIGR00472 438 KVEKQK---DG--WEVTVPSYRHDITIEEDLIEEIARIYGYDNIPAEPLSVSSKLNKNNENYLLLRKLRTLLVGLGLNEV 512 (798)
T ss_pred EEEecC---Ce--EEEECCCCccccccchhhHhhhhhhhCcccCCCCCCCcccCCCCCCHHHHHHHHHHHHHHHCCCcEE
Confidence 997543 35 999999999999999999999999999999999988643 333 344455899999999999999
Q ss_pred eeccccChHHHHHHcCCCCCCCCce-eeCCCcCCcccccccchHHHHHHHHhccCCCC-CeeEEEeCcEeecCCCccccc
Q 007714 415 LTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPK-PIKIYEVGDVVLLDEKKDVGA 492 (592)
Q Consensus 415 ~t~sl~s~~~~~~~~~~~~~~~~~v-i~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~-~~~lFEiG~V~~~~~~~~~~~ 492 (592)
+||+|+|+++... ++.... ...+ |+||+|+|+++||+||+||||+++++|++++. ++++||+|+||..+++ . .
T Consensus 513 ~tysl~s~~~~~~-~~~~~~-~~~i~l~NPis~e~s~lR~SLlpgLL~~~~~N~~~~~~~~~lFEiG~V~~~~~~--~-~ 587 (798)
T TIGR00472 513 ITYSLVSSEKAEK-FNFPKL-ENLVEIKNPLSNERSVLRTSLLPSLLEVLAYNQNRKNKDVKIFEIGKVFAKDGL--G-V 587 (798)
T ss_pred eccccCCHHHHHh-hcCCCC-CceEEEeCCCchHHHHHHHhhHHHHHHHHHHHHhCCCCCEeEEeeecccCCCCC--C-c
Confidence 9999999976443 433221 1268 99999999999999999999999999999865 5999999999975432 1 5
Q ss_pred ccccEEEEEEeCCC-----------CCHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEe-cCCCCccCCceEEEEECCEE
Q 007714 493 SCRRRLAALYCGAN-----------SGFELIHCLVDRIMEVIGTPFVPVGDDTGYYIQR-SDEPEFLPGRQASITHKGKH 560 (592)
Q Consensus 493 ~~~~~l~~~~~g~~-----------~~f~~ikg~le~ll~~lgi~~~~~~~~~~~~~~~-~~~~~f~pgr~A~I~~~g~~ 560 (592)
++.+++|++++|.. ++|+++||+|+++|..+|+... +.+.+ ..++.|||||||.|+++|+.
T Consensus 588 ~e~~~La~~~~g~~~~~~~~~~~~~~df~d~Kg~le~ll~~l~~~~~-------~~~~~~~~~~~~hpg~sA~I~~~~~~ 660 (798)
T TIGR00472 588 KEQLRLAILISGEKNPSSWNHKEEKVDFYDLKGDVESLLELLGLSDD-------VYFKNTAENEELHPGQSATIYLKGKK 660 (798)
T ss_pred chhhEEEEEEECCCCcccccCCCCcCChHHHHHHHHHHHHHcCCCcc-------eEEeecCCCCCCCCCcEEEEEECCEE
Confidence 68889999999953 6899999999999999988521 34444 55678999999999999999
Q ss_pred EEEEEEeCHHHHHhCCCCCCEEEEEEecccc
Q 007714 561 VGTFGIVHPEVLNNFDISDPCSFMEIDIENF 591 (592)
Q Consensus 561 iG~~GelhP~vl~~~~l~~pv~~~El~l~~l 591 (592)
||++|+|||+++++|+|+.||++|||||+.|
T Consensus 661 iG~iG~lhP~v~~~~~l~~~v~~~Ei~l~~l 691 (798)
T TIGR00472 661 IGFIGELHPEIAKKYDLKEPTFVAELDLDRL 691 (798)
T ss_pred EEEEEEECHHHHHHcCCCCCeEEEEEEHHHH
Confidence 9999999999999999999999999999865
No 8
>COG0072 PheT Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.8e-90 Score=774.28 Aligned_cols=486 Identities=29% Similarity=0.463 Sum_probs=407.4
Q ss_pred CceEEEEecCCCcccccCHHHHHHHHHHhcCC-CCCCceeecCCCCCCcceEEEeecC-CCCCCeEEEEEEeccccCcCC
Q 007714 60 EEVIYKIEVPANRYDLLCLEGIAQALRVFNKQ-QEIPKYTLSDVSKDSMLQMHVKPET-SSIRPYVVCAVLRDISFDEAS 137 (592)
Q Consensus 60 ~d~i~~ieit~NR~Dlls~~GiARel~a~~g~-~~~p~~~~~~~~~~~~~~i~V~~~~-~~~rp~~~~~vi~~V~~~~~~ 137 (592)
+|.++++++||||+||+|+.|+|||+++.++. ...|.........+...++.+..+. +..||+|.+++++|+++..
T Consensus 12 ~d~i~e~~~tpnr~D~ls~~GiarE~aa~~~~~~~~~~~~d~~~~~~~~~~~~v~ie~~~~~~~~~~~~~i~~v~~~~-- 89 (650)
T COG0072 12 DDLIIEISITPNRADCLSMLGIARELAAEYDLKLEFPKIRDLESAEGLARKIFLEIEAGKYACPRYAGRVIKGVKVNA-- 89 (650)
T ss_pred ccceeeccCCCCHHHhhccccceeehhhhcCCcccccccccccccccccceeEeecccccccCCccceEEEECcccCC--
Confidence 46689999999999999999999999999875 3444432111111112267777777 5899999999999999643
Q ss_pred cCCHHHHHHHHHhcCCC-CCcEEEeeeeeccccCCC---eEEEecCCCceEEEeCCCcccCChhHHHhhhcccccccccc
Q 007714 138 YNSFIDLQDKLHQNICR-RRTLVAIGTHDLDTLQGP---FTYEALPPSHINFVPLKQTRDFTADELMEFYKSDLKLKKYL 213 (592)
Q Consensus 138 ~~s~~~lq~kL~~~~~r-~r~~VdIgn~Dld~i~~p---~~y~~~~~~~i~f~~L~~~~~~~~~el~~l~~~~~~l~~y~ 213 (592)
.||.|||.+|...+.| .+++||++||.+..+++| |++...+. ++.++-... ++++..|++.++.+..
T Consensus 90 -~sP~~~~~~l~~~gir~in~lVDitnyv~l~~Gqp~h~~d~~~~~~-~i~vr~a~~-----~e~~~~ld~~~~~l~~-- 160 (650)
T COG0072 90 -PSPLWLQARLRGVGIRPINNLVDITNYVHLELGQPRHAFDIGKIDG-KIPVRYAKE-----GETLVFLDGKERELLT-- 160 (650)
T ss_pred -CCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHhCCcchHhhhhhccC-ceEEEEccC-----CCceEecCCcceeeCC--
Confidence 5999999999998888 599999999888888888 55555554 466664432 2336666666777643
Q ss_pred ccccCCCceeEEEeCCCCeeecCCcccCCcceeecCCeEEEEEec--------------------------ccChhhHHH
Q 007714 214 HIIENSPLYPVLYDQNRTVLSLPPIINGAHSAITLKTKNVFIECT--------------------------ATDLTKAKI 267 (592)
Q Consensus 214 ~i~~~~~~~~vI~D~~~~vlslagIigg~~s~It~~T~nI~iE~a--------------------------~~D~~~~~~ 267 (592)
...||+|.++ ++|+||||||++|+++++|+|+++|+| |+|+..+..
T Consensus 161 -------~~~vi~d~~~-~~alagv~g~~~s~~~~~t~d~~~E~a~f~Pi~i~~~~r~l~~~T~~~~r~~rGvD~~~v~~ 232 (650)
T COG0072 161 -------GDLVIADHEK-GLALAGVMGGADSEVDPNTTDVLLEVASFPPIIISKTSRRLGLDTEASFRFERGVDPELVEK 232 (650)
T ss_pred -------CCEEEEeCCC-ceeeeeeeeccccCCCccceeeeeeeEecChHHHHhhcccccCCcceeEEeecCCCHHHHHH
Confidence 4589999996 889999999999999999999999999 688999999
Q ss_pred HHHHHHHHHHHhcCCceeEeeEEEEeeCCceeeecCCCceEEEeehhHHhhccCCcCCHHHHHHHHHhcCCeEEEcCCCC
Q 007714 268 VLNTMVTIFSEYCKRKYQVEPVEVVYADGRSYVYPDLSAYNMEVSLSYINHTIGVSLEAEEVTSLLNRMQLHAERSASGN 347 (592)
Q Consensus 268 al~~~~~~l~~~~~~~~~i~~v~v~~~~g~~~~~p~~~~~~i~l~~~~i~~~LG~~l~~~~i~~~L~~lg~~~~~~~~~~ 347 (592)
|+++++++|+++|++ ++.++.+.+. ..... +++.+.++.++|+++||.+++.+++.++|+||||.++..++
T Consensus 233 al~~~~~ll~e~~gg--~v~~~~~~~~--~~~~~---~~~~i~~~~~~i~~llG~~ls~eei~~iL~rLg~~~~~~~~-- 303 (650)
T COG0072 233 ALNRATTLLAEICGG--EVSSVVIVGG--DEKLT---PPRKIELRLERINRLLGLELSAEEIEKILKRLGFKVEVKGD-- 303 (650)
T ss_pred HHHHHHHHHHHhcCC--eeeeEEEecC--CcCCC---CCceEEecHHHHHHHhCCCCCHHHHHHHHHHcCCeeEecCC--
Confidence 999999999999974 6777766642 11111 27899999999999999999999999999999999987542
Q ss_pred CcceEEEEcCCCCcccCCCchhHhHHHHHhCCCCCCCCCCCCC---C--CChHHHHHHHHHHHHHHCCceEEeeccccCh
Q 007714 348 NQWNINVLVPPTRSDVLHPCDVMEDVAIAYGYNNIPKRKPASV---K--PLALNEFSDLMRLEIAMNGFTEVLTWILCSS 422 (592)
Q Consensus 348 ~~~~~~V~vP~~R~DI~~~~DliEEIar~yGydni~~~~p~~~---~--~~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~ 422 (592)
. |.|++|+||+||+|++||||||||+||||||++++|... + .++.+++.+++|+.|+++||+|++||+|+|+
T Consensus 304 -~--~~V~vPs~R~DI~~e~DliEEv~r~yGy~ni~~~~p~~~~~~~~~~~~~~~~~r~vr~~l~~~G~~Evitysl~s~ 380 (650)
T COG0072 304 -G--LTVTVPSYRVDILIEADLIEEVARIYGYNNIPPELPSAFTIGRGGLTPLQKFRRKVRRALVGLGFQEVITYSLTSP 380 (650)
T ss_pred -c--EEEeCCCCcccccchhHHHHHHHHHhCcccCCCcCCcccccccCCCChHHHHHHHHHHHHHhCCcceEeeeccCCH
Confidence 5 899999999999999999999999999999999999765 3 6788899999999999999999999999999
Q ss_pred HHHHHHcCCCCCCCCce-eeCCCcCCcccccccchHHHHHHHHhccCCCCC-eeEEEeCcEeecCCCcccccccccEEEE
Q 007714 423 KEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKP-IKIYEVGDVVLLDEKKDVGASCRRRLAA 500 (592)
Q Consensus 423 ~~~~~~~~~~~~~~~~v-i~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~-~~lFEiG~V~~~~~~~~~~~~~~~~l~~ 500 (592)
+.+..++.... +++ |+||+|+|+++||+||+||||+++++|+||++| +++||+|+||..+++.. ++..++++
T Consensus 381 e~~~~~~~~~~---~~~~l~NPiS~e~s~mR~sLlp~LL~~~~~N~~r~~~~~~iFEiG~v~~~~~~~~---~~~~~~~~ 454 (650)
T COG0072 381 EEAKLFGLEND---EALELANPISEEYSVLRTSLLPGLLEALSYNKNRKNPDVRIFEIGDVFVKDEEAE---RETRHLAG 454 (650)
T ss_pred HHHHHhccCCC---cceEecCCcchhHHHHHHHHHHHHHHHHHHhhccCCCCeeEEEeeeeEecCCccc---chhHHHHH
Confidence 99888775432 278 999999999999999999999999999999998 99999999999875432 22223333
Q ss_pred EEeC----------CCCCHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEecCCCCccCCceEEEEECCEEEEEEEEeCHH
Q 007714 501 LYCG----------ANSGFELIHCLVDRIMEVIGTPFVPVGDDTGYYIQRSDEPEFLPGRQASITHKGKHVGTFGIVHPE 570 (592)
Q Consensus 501 ~~~g----------~~~~f~~ikg~le~ll~~lgi~~~~~~~~~~~~~~~~~~~~f~pgr~A~I~~~g~~iG~~GelhP~ 570 (592)
+++| ..++|+++||+|+++|+.+|+. +++.+.++++|||||||.|+++++.||+||+|||+
T Consensus 455 l~~g~~~~~~w~~~~~v~f~d~Kg~ve~ll~~lg~~---------~~~~~~~~~~~hpgrsA~I~~~~~~iG~iGeiHP~ 525 (650)
T COG0072 455 LAAGLAGEESWQGKRPVDFYDAKGDLEALLEALGVE---------YEFEPAEHPAFHPGRSAAIYLNKEVIGFIGELHPE 525 (650)
T ss_pred HhhccccccccccCCCcCHHHHHHHHHHHHHHhCCc---------eEEEEccCCCccCCceEEEEECCEEEEEEeeeCHH
Confidence 3333 2688999999999999999987 89999999999999999999998899999999999
Q ss_pred HHHhCCCCCCEEEEEEecccc
Q 007714 571 VLNNFDISDPCSFMEIDIENF 591 (592)
Q Consensus 571 vl~~~~l~~pv~~~El~l~~l 591 (592)
++++|+|+.|+|+|||++..+
T Consensus 526 vl~~~dl~~~~~~fEi~l~~l 546 (650)
T COG0072 526 VLKEFDLPGPVYVFEIDLDAL 546 (650)
T ss_pred HHHhcCCCCCeEEEEEehhhh
Confidence 999999999999999998754
No 9
>cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. While the alpha chain contains a catalytic core domain, the beta chain has a non-catalytic core domain.
Probab=100.00 E-value=1.4e-40 Score=325.42 Aligned_cols=183 Identities=32% Similarity=0.602 Sum_probs=157.8
Q ss_pred HHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCce-eeCCCcCCcccccccchHHHHHHHHhccCCC-CCe
Q 007714 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHP-KPI 473 (592)
Q Consensus 396 ~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v-i~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~-~~~ 473 (592)
+.+.+++|+.|+++||+|++||+|++++++.. +... ....| |.||+|+|+++||+||+||||+++++|++++ .++
T Consensus 3 ~~~~~~ir~~L~~~G~~E~~tys~~~~~~~~~-~~~~--~~~~i~l~NPis~e~~~lR~sLlp~LL~~~~~N~~~~~~~~ 79 (198)
T cd00769 3 QKLERKLRRLLAGLGFQEVITYSLTSPEEAEL-FDGG--LDEAVELSNPLSEEYSVLRTSLLPGLLDALARNLNRKNKPL 79 (198)
T ss_pred hHHHHHHHHHHHHCCCceeecccCCCHHHHHh-ccCC--CCCeEEEcCCCchhHHHHHHHHHHHHHHHHHHHhcCCCCCE
Confidence 56889999999999999999999999976543 3221 13578 9999999999999999999999999999987 579
Q ss_pred eEEEeCcEeecCCCcccccccccEEEEEEeCCC-----------CCHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEecC
Q 007714 474 KIYEVGDVVLLDEKKDVGASCRRRLAALYCGAN-----------SGFELIHCLVDRIMEVIGTPFVPVGDDTGYYIQRSD 542 (592)
Q Consensus 474 ~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~g~~-----------~~f~~ikg~le~ll~~lgi~~~~~~~~~~~~~~~~~ 542 (592)
++||||+||.++.. .+++.++++++++|.. ++|+++||+++.+|..+|+.. .|...+..
T Consensus 80 ~lFEiG~vf~~~~~---~~~e~~~l~~~~~g~~~~~~w~~~~~~~~f~~~Kg~ve~ll~~l~~~~-------~~~~~~~~ 149 (198)
T cd00769 80 RLFEIGRVFLKDED---GPEEEEHLAALLSGNREPESWQGKGRPVDFYDAKGILEALLRALGIIV-------EFELEELD 149 (198)
T ss_pred eEEEeEeEEecCCC---CCcchheEEEEEECCCccccccCCCCccCHhhHHHHHHHHHHHcCCeE-------EEEecCCC
Confidence 99999999976531 3468889999999963 599999999999999999741 14333366
Q ss_pred CCCccCCceEEEEECCEEEEEEEEeCHHHHHhCCCCCCEEEEEEecccc
Q 007714 543 EPEFLPGRQASITHKGKHVGTFGIVHPEVLNNFDISDPCSFMEIDIENF 591 (592)
Q Consensus 543 ~~~f~pgr~A~I~~~g~~iG~~GelhP~vl~~~~l~~pv~~~El~l~~l 591 (592)
.++|||||||+|+++|+.+|++|+|||+++++|||+.||++||||++.|
T Consensus 150 ~~~~hpg~~a~I~~~g~~vG~~G~lhP~v~~~~~l~~~v~~~Ei~l~~l 198 (198)
T cd00769 150 ADLFHPGRSAKIYVNGEVIGFIGELHPEVLKEFDLKEPVYAFELDLDAL 198 (198)
T ss_pred CCccCCCceEEEEECCEEEEEEEeeCHHHHHHcCCCCceEEEEEecccC
Confidence 6789999999999999999999999999999999999999999999875
No 10
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer.
Probab=100.00 E-value=1.4e-35 Score=294.21 Aligned_cols=185 Identities=19% Similarity=0.182 Sum_probs=157.2
Q ss_pred ChHHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCC-----CCce-eeCCCcCCcccccccchHHHHHHHHhc
Q 007714 393 LALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDE-----STAV-VGNPRTSDFEVVRTTLMPGILKTIGHN 466 (592)
Q Consensus 393 ~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~-----~~~v-i~NP~s~e~~~lR~SLlpgLL~~~~~N 466 (592)
++.+++.+++|+.|+++||+|++||+|++.+..++.++...+. .+.+ |.||+ +++|||||+||||+++++|
T Consensus 1 ~~~~~~~~~ir~~L~~~Gf~Ev~tys~~~~~~~~~~~~~~~~~~~~~~~~~v~l~NP~---~~~LR~sLlp~LL~~l~~N 77 (218)
T cd00496 1 HPLNKVIEEIEDIFVSMGFTEVEGPEVETDFYNFDALNIPQDHPARDMQDTFYINDPA---RLLLRTHTSAVQARALAKL 77 (218)
T ss_pred ChHHHHHHHHHHHHHHCCCEEEeCCcccccchhhhhcCCCCCCcccccCceEEECCCc---eEEEeccCcHHHHHHHHhc
Confidence 4678899999999999999999999999996545555433210 0468 99999 9999999999999999999
Q ss_pred cCCCCCeeEEEeCcEeecCCCcccccccccEEEEEEeCCCCCHHHHHHHHHHHHHHhC--CCCCCCCCCccEEEEecCCC
Q 007714 467 KDHPKPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVIG--TPFVPVGDDTGYYIQRSDEP 544 (592)
Q Consensus 467 ~~~~~~~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~g~~~~f~~ikg~le~ll~~lg--i~~~~~~~~~~~~~~~~~~~ 544 (592)
..++++||||+||.++..+.....+.++++++++|...+|+++||+++.+++.+| +.. +++.+..++
T Consensus 78 ---~~~~~lFEiG~Vf~~~~~~~~~~~E~~~l~~~~~g~~~df~dlkg~ve~ll~~l~~~~~~--------~~~~~~~~~ 146 (218)
T cd00496 78 ---KPPIRIFSIGRVYRNDEIDATHLPEFHQIEGLVVDKGLTFADLKGTLEEFAKELFGPITK--------VRFRPSYFP 146 (218)
T ss_pred ---CCCeeEEEEcCeEECCCCCCCcCCccEEEEEEEECCCCCHHHHHHHHHHHHHHhcCCCce--------eEecCCcCC
Confidence 5579999999999876421122238889999999998899999999999999999 441 556666678
Q ss_pred CccCCceEEEEECC----EEEEEEEEeCHHHHHhCCC--CCCEEEEEEecccc
Q 007714 545 EFLPGRQASITHKG----KHVGTFGIVHPEVLNNFDI--SDPCSFMEIDIENF 591 (592)
Q Consensus 545 ~f~pgr~A~I~~~g----~~iG~~GelhP~vl~~~~l--~~pv~~~El~l~~l 591 (592)
.+|||+||.|+++| +.||++|+|||+++++||| +.||++||||++.|
T Consensus 147 ~~hp~~sa~i~~~g~~~~~~iG~~G~lhP~vl~~~~i~~~~~v~~~Eidl~~l 199 (218)
T cd00496 147 FTEPSFEVDVYCPGCLGWLEILGCGMVRPEVLENAGIDEEYSGFAFGIGLERL 199 (218)
T ss_pred CCCCcEEEEEEeCCCCCeEEEEecccccHHHHHHCCCCCCceEEEEEecHHHH
Confidence 89999999999999 8999999999999999999 99999999999865
No 11
>TIGR02367 PylS pyrrolysyl-tRNA synthetase. PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, such as trimethylamine methyltransferase.
Probab=99.98 E-value=7.7e-32 Score=283.69 Aligned_cols=202 Identities=14% Similarity=0.190 Sum_probs=177.7
Q ss_pred HHHHHhCCCCCCCCCC--------CCC---CCChHHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCce-
Q 007714 372 DVAIAYGYNNIPKRKP--------ASV---KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV- 439 (592)
Q Consensus 372 EIar~yGydni~~~~p--------~~~---~~~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v- 439 (592)
+|+|+||||+|++++| ... +.++.+++.+.+|+.|.++||+|++|+.|++.+ .++.|+... ..
T Consensus 208 ~v~~~~gf~~~ep~lP~~~~~~~~~~~TiG~~~~~~~Led~IRevfvg~GFqEV~TPtLt~eE-~~E~m~~~~----g~e 282 (453)
T TIGR02367 208 SLNMAKPFRELEPELLSRRKKDFQQIYAEDREDYLGKLERDITKFFVDRGFLEIKSPILIPAE-YIERMGIDN----DTE 282 (453)
T ss_pred hhHHhccccccCcccCcccccccccccccCcccHHHHHHHHHHHHHHHCCCEEEECCeecchH-HHHhhcCcc----CCc
Confidence 3599999999999999 433 789999999999999999999999999999654 467776432 25
Q ss_pred eeCCC--cCCcccccccchHHHHHHHHhccC-CCCCeeEEEeCcEeecCCCcccccccccEEEEEEeCCCCCHHHHHHHH
Q 007714 440 VGNPR--TSDFEVVRTTLMPGILKTIGHNKD-HPKPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLV 516 (592)
Q Consensus 440 i~NP~--s~e~~~lR~SLlpgLL~~~~~N~~-~~~~~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~g~~~~f~~ikg~l 516 (592)
+.||+ +.++.+||++++|+|++.++.|.+ ...|+|+||||+||..+....++.++.+++++.++|...+|.|+++++
T Consensus 283 I~n~Iyk~ee~lvLRPdLTPsLaR~La~N~~~l~~PqKIFEIGkVFR~E~~~~thlREF~QL~~eIaG~~atfaDlealL 362 (453)
T TIGR02367 283 LSKQIFRVDKNFCLRPMLAPNLYNYLRKLDRALPDPIKIFEIGPCYRKESDGKEHLEEFTMLNFCQMGSGCTRENLEAII 362 (453)
T ss_pred ccccceEecCceEecccCHHHHHHHHHHhhhhccCCeeEEEEcCeEecCCCCCCCcCeEEEEEEEEECCCCCHHHHHHHH
Confidence 78888 788999999999999999998764 567999999999998876666778899999999999999999999999
Q ss_pred HHHHHHhCCCCCCCCCCccEEEEecCCCCccCCceEEEEECCEEE--EEEEEeCHHHHHhCCCCCCEEEEEEecccc
Q 007714 517 DRIMEVIGTPFVPVGDDTGYYIQRSDEPEFLPGRQASITHKGKHV--GTFGIVHPEVLNNFDISDPCSFMEIDIENF 591 (592)
Q Consensus 517 e~ll~~lgi~~~~~~~~~~~~~~~~~~~~f~pgr~A~I~~~g~~i--G~~GelhP~vl~~~~l~~pv~~~El~l~~l 591 (592)
..+|+.||++ |++. +++.|++||+|+|+.++..+ |+||++|| +++|||..||++|||+|+.|
T Consensus 363 ~e~Lr~LGId---------feit--E~s~FI~GR~A~I~~G~~Ev~~GvfGEihp--L~~fGIe~PVvAfEI~LeRL 426 (453)
T TIGR02367 363 KDFLDHLEID---------FEIV--GDSCMVYGDTLDIMHGDLELSSAVVGPIPL--DREWGIDKPWIGAGFGLERL 426 (453)
T ss_pred HHHHHHCCCc---------eEEe--CCCceEecceeeeecCCEEEeeEEEeeccc--ccccCCCCccEEEEeehhHH
Confidence 9999999997 7775 45889999999999776656 99999997 99999999999999999976
No 12
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit. Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment.
Probab=99.98 E-value=3.4e-31 Score=273.35 Aligned_cols=191 Identities=22% Similarity=0.198 Sum_probs=161.0
Q ss_pred CCChHHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCce-eeCC-CcCCcccccccchHHHHHHHHhccC
Q 007714 391 KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNP-RTSDFEVVRTTLMPGILKTIGHNKD 468 (592)
Q Consensus 391 ~~~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v-i~NP-~s~e~~~lR~SLlpgLL~~~~~N~~ 468 (592)
..++.+++.+++|+.|+++||+|++||+|+++..+++.++.+.+ ..+. +.++ ...|+++|||||+|+||+++++|++
T Consensus 70 ~~~p~~~~~~~ir~~l~~~Gf~Ev~~~~~~s~~~~fd~l~~~~~-hpar~~~d~~~l~d~~vLRtsl~p~ll~~l~~N~~ 148 (294)
T TIGR00468 70 SLHPLTRVIDEIRDIFLGLGFTEEKGPEVETDFWNFDALNIPQD-HPARDMQDTFYIKDRLLLRTHTTAVQLRTMEENEK 148 (294)
T ss_pred CcCHHHHHHHHHHHHHHHCCCEEeeCCceeccHHHHHHhCCCCC-CcchhhccceeecCCcceecccHHHHHHHHHhcCC
Confidence 67899999999999999999999999999999767777765431 1111 2121 1128999999999999999999988
Q ss_pred CCCCeeEEEeCcEeecCCCcccccccccEEEEEEeCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEecCCCCccC
Q 007714 469 HPKPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVIGTPFVPVGDDTGYYIQRSDEPEFLP 548 (592)
Q Consensus 469 ~~~~~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~g~~~~f~~ikg~le~ll~~lgi~~~~~~~~~~~~~~~~~~~~f~p 548 (592)
.|+|+||+|+||.++..+.++..+.+++++++.+...+|+++||+++.++..++++. .+.++++..|.+||
T Consensus 149 --~pirlFEiGrVfr~d~~d~~~~pef~ql~gl~~~~~~~f~dLKg~le~ll~~l~~~~-------~~~~~~~~~p~~~P 219 (294)
T TIGR00468 149 --PPIRIFSPGRVFRNDTVDATHLPEFHQVEGLVIDKNVSFTNLKGFLEEFLKKMFGET-------EIRFRPSYFPFTEP 219 (294)
T ss_pred --CCceEEEecceEEcCCCCCccCChhhEEEEEEECCCCCHHHHHHHHHHHHHHhCCCc-------ceeeccCCCCCCCC
Confidence 679999999999876422233348889999999988999999999999999999852 15677888888999
Q ss_pred CceEEEEE-CCE---EEEEEEEeCHHHHHhCCCCC--CEEEEEEecccc
Q 007714 549 GRQASITH-KGK---HVGTFGIVHPEVLNNFDISD--PCSFMEIDIENF 591 (592)
Q Consensus 549 gr~A~I~~-~g~---~iG~~GelhP~vl~~~~l~~--pv~~~El~l~~l 591 (592)
|++|+|++ +|+ .||++|+|||+|++++||+. |+++|||+++.|
T Consensus 220 s~e~~i~~~~g~~w~eiG~~G~vhP~Vl~~~gi~~~~~v~afel~lerl 268 (294)
T TIGR00468 220 SAEIDVYCWEGKTWLEVLGAGMFRPEVLEPMGIDPTYPGFAWGIGIERL 268 (294)
T ss_pred CEEEEEEEeCCCccEEEEEeccCcHHHHHHCCCCCCCeEEEEEeeHHHH
Confidence 99999999 888 99999999999999999999 999999999864
No 13
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B ....
Probab=99.96 E-value=9.9e-29 Score=248.07 Aligned_cols=192 Identities=30% Similarity=0.390 Sum_probs=171.1
Q ss_pred CCChHHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCC-----CCce-eeCCCc--CCcccccccchHHHHHH
Q 007714 391 KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDE-----STAV-VGNPRT--SDFEVVRTTLMPGILKT 462 (592)
Q Consensus 391 ~~~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~-----~~~v-i~NP~s--~e~~~lR~SLlpgLL~~ 462 (592)
+.+|.+++.+++|+.|+++||+|+.++.+.+...+|+.|+.+.+. .+.+ +.||.+ ++..+|||++.|+++++
T Consensus 15 ~~hp~~~~~~~i~~~~~~~Gf~e~~~~~v~s~~~nFD~Ln~p~dHpaR~~~Dtfyi~~p~~~~~~~~vLRThts~~~~~~ 94 (247)
T PF01409_consen 15 RLHPITKFIREIRDIFVGMGFQEVEGPEVESEFYNFDALNIPQDHPARDMQDTFYISNPYSAEEDYSVLRTHTSPGQLRT 94 (247)
T ss_dssp BTSHHHHHHHHHHHHHHCTTSEEESTTSEEEHHHHTGGGTSTTTSCGGCGTTSEBSCSSSBCECSSEEE-SSTHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHCCCeEeeCCeEEeeHHHHHhhCcCCCccccccccceeeeccccccchhhhhhhhhhHHHHHH
Confidence 889999999999999999999999999999999999999877642 3457 999999 99999999999999999
Q ss_pred HHhccCCCCCeeEEEeCcEeecCCCcccccccccEEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCCCCCCCCccEEEEec
Q 007714 463 IGHNKDHPKPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVI-GTPFVPVGDDTGYYIQRS 541 (592)
Q Consensus 463 ~~~N~~~~~~~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~g~~~~f~~ikg~le~ll~~l-gi~~~~~~~~~~~~~~~~ 541 (592)
+ |.+++.|+|+||+|+||+++..+.++..+.+++.++++++.++|.++||.|+.+++.+ |.+. .+.++++
T Consensus 95 l--~~~~~~p~kif~iG~VyR~D~~D~th~~~f~Qleg~~~~~~~~f~~Lk~~l~~l~~~lfG~~~-------~~r~~ps 165 (247)
T PF01409_consen 95 L--NKHRPPPIKIFEIGKVYRRDEIDATHLPEFHQLEGLVVDKNVTFEDLKGTLEELLKELFGIDV-------KVRFRPS 165 (247)
T ss_dssp H--TTTSHSSEEEEEEEEEESSSCSBSSBESEEEEEEEEEEETTE-HHHHHHHHHHHHHHHHTTTE-------EEEEEEC
T ss_pred H--HHhcCCCeEEEecCceEecCCcccccCccceeEeeEEEecccchhHHHHHHHHHHHHHhhccc-------ceEeecC
Confidence 9 7777789999999999999886677888899999999999999999999999999999 9862 1788999
Q ss_pred CCCCccCCceEEEEE------CCEEEEEEEEeCHHHHHhCCC--CCCEEEEEEecccc
Q 007714 542 DEPEFLPGRQASITH------KGKHVGTFGIVHPEVLNNFDI--SDPCSFMEIDIENF 591 (592)
Q Consensus 542 ~~~~f~pgr~A~I~~------~g~~iG~~GelhP~vl~~~~l--~~pv~~~El~l~~l 591 (592)
.+|+++||++++|++ ++..||.+|++||+||+++|+ +.|+++|.+.++.|
T Consensus 166 ~fPftePs~e~~i~~~~~~~~~wiEvgg~G~vhP~Vl~~~gid~~~~~~A~G~GleRl 223 (247)
T PF01409_consen 166 YFPFTEPSREADIYCGVCKGGGWIEVGGCGMVHPEVLENWGIDEEYPGFAFGLGLERL 223 (247)
T ss_dssp EETTEEEEEEEEEEEECTTTTCEEEEEEEEEE-HHHHHHTT--TTSEEEEEEEEHHHH
T ss_pred CCCcccCCeEEEEEEeeccCCCceEEeecccccHhhhhccCcCccceEEEecCCHHHH
Confidence 899999999999999 334799999999999999999 89999999999865
No 14
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed
Probab=99.94 E-value=8.1e-26 Score=241.79 Aligned_cols=188 Identities=15% Similarity=0.304 Sum_probs=150.3
Q ss_pred CCChHHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcC---------------CCCC----CCCce--eeC----CCc
Q 007714 391 KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLN---------------RQTD----ESTAV--VGN----PRT 445 (592)
Q Consensus 391 ~~~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~---------------~~~~----~~~~v--i~N----P~s 445 (592)
+++|.+....+||+.-..+||.|++|...+.+.+.+..++ ++.. ++.-+ |.+ ++|
T Consensus 45 ~~hp~~~ti~~lr~ayl~~gf~e~~np~iv~~~~~~~qfg~ea~avldr~fyl~glprp~vg~~~~~~~~i~~~~~~~~~ 124 (529)
T PRK06253 45 KPHPVYDTIERLREAYLRMGFEEMINPVIVDEQDIYKQFGPEAMAVLDRCFYLAGLPRPNVGISDEKIEQIEEILGRDLS 124 (529)
T ss_pred CCCcHHHHHHHHHHHHHhcChHhhcCceeecHHHHHHhhCHHHHHHHHHhhhhcCCCCCCCCcCHHHHHHHHHHhCCCCC
Confidence 8899999999999999999999999999999887443321 1100 00001 111 333
Q ss_pred CC--------------------------------------------------------cccccccchHHHHHHHHhccCC
Q 007714 446 SD--------------------------------------------------------FEVVRTTLMPGILKTIGHNKDH 469 (592)
Q Consensus 446 ~e--------------------------------------------------------~~~lR~SLlpgLL~~~~~N~~~ 469 (592)
.+ +++||+||+||||+++++|+++
T Consensus 125 ~~~~e~l~~~lh~ykkg~~~gddl~~e~~~~l~~~~~~~~~~l~~vfpe~k~l~p~~~~svLRtSLlPGLL~tLs~Nl~R 204 (529)
T PRK06253 125 EEKIESLREVLHSYKKGEIDGDDLVLEISKALEVSDEMVLKILDEVFPEFKELKPESSRLTLRSHMTSGWFITLSSLLEK 204 (529)
T ss_pred hhHHHHHHHHHHHhhcCCCccchhHHHHHHhcCCChHHHHHHHHHhChHhhhcCCccccCccccchHHHHHHHHHHHHhC
Confidence 33 8999999999999999999987
Q ss_pred C-CCeeEEEeCcEeecCCCcccccccccEEEEEEeC------CCCCHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEec-
Q 007714 470 P-KPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCG------ANSGFELIHCLVDRIMEVIGTPFVPVGDDTGYYIQRS- 541 (592)
Q Consensus 470 ~-~~~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~g------~~~~f~~ikg~le~ll~~lgi~~~~~~~~~~~~~~~~- 541 (592)
+ .|+++||+|+||.++.+ .+..+++.+.+| ...+|+++||+++.||..+|+.. +.+.+.
T Consensus 205 g~~piRLFEIGRVFr~d~~-----eE~t~La~llsGs~W~~~e~vDFfDlKGiLE~LL~~LGI~~--------i~f~pse 271 (529)
T PRK06253 205 RPLPIKLFSIDRCFRREQR-----EDASRLMTYHSASCVIADEDVTVDDGKAVAEGLLSQFGFTK--------FKFRPDE 271 (529)
T ss_pred CCCCEEEEEEeeEEecCCc-----cchhheeEEEEccccccCCCCCHHHHHHHHHHHHHHcCCCe--------EEEeecc
Confidence 6 47999999999976432 145567666665 35689999999999999999862 566666
Q ss_pred -CCCCccCCceEEEEE-----CC-EEEEEEEEeCHHHHHhCCCCCCEEEEEEecccc
Q 007714 542 -DEPEFLPGRQASITH-----KG-KHVGTFGIVHPEVLNNFDISDPCSFMEIDIENF 591 (592)
Q Consensus 542 -~~~~f~pgr~A~I~~-----~g-~~iG~~GelhP~vl~~~~l~~pv~~~El~l~~l 591 (592)
..++|||||+|+|++ +| +.||++|++||+++++|||+.||++||||++.|
T Consensus 272 ~~~p~fHPGRSAeI~v~hp~~dGwkeIG~fGELHP~VLk~fDI~~pV~aFELDLErL 328 (529)
T PRK06253 272 KRSKYYTPDTQTEVYAYHPKLDGWVEVATFGIYSPVALAEYGIDVPVMNLGLGVERL 328 (529)
T ss_pred cCCCCcCCCeEEEEEEEeecCCCCEEEEEEEEECHHHHHHcCCCCceEEEEEeHHHH
Confidence 557899999999999 88 789999999999999999999999999999865
No 15
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed
Probab=99.93 E-value=2.9e-25 Score=235.06 Aligned_cols=183 Identities=17% Similarity=0.239 Sum_probs=157.8
Q ss_pred CCChHHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCce-eeCCC--cCCcccccccchHHHHHHHHhcc
Q 007714 391 KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPR--TSDFEVVRTTLMPGILKTIGHNK 467 (592)
Q Consensus 391 ~~~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v-i~NP~--s~e~~~lR~SLlpgLL~~~~~N~ 467 (592)
+.++...+.+.+|+.|.++||+|+.|++|++.+. ++.++...+ . +.+|+ ++++.+||++|+|+|++.++.|.
T Consensus 202 ~~~~~s~Le~aIR~~f~~~GF~EV~TPtLt~ee~-~e~~g~~~g----~~i~~~my~ideel~LRpsLtPsLlr~la~n~ 276 (417)
T PRK09537 202 REDYLGKLERDITKFFVDRGFLEIKSPILIPAEY-IERMGIDND----TELSKQIFRVDKNFCLRPMLAPGLYNYLRKLD 276 (417)
T ss_pred CCCHHHHHHHHHHHHHHHCCCEEEECCeeecHHH-HHHhCCCCc----ccchhhheeeCCceEehhhhHHHHHHHHHhhh
Confidence 7788999999999999999999999999997764 666654211 2 44555 56789999999999999999886
Q ss_pred C-CCCCeeEEEeCcEeecCCCcccccccccEEEEEEeCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEecCCCCc
Q 007714 468 D-HPKPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVIGTPFVPVGDDTGYYIQRSDEPEF 546 (592)
Q Consensus 468 ~-~~~~~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~g~~~~f~~ikg~le~ll~~lgi~~~~~~~~~~~~~~~~~~~~f 546 (592)
+ ...|+|+||+|+||..+.....+.++.+++++.+.|...+|.+++++++.+|+.||++ |.+. .++.|
T Consensus 277 k~~~~P~RIFEIG~VFR~E~~g~~hlrEf~Ql~~~iiGs~~~f~dL~~lleeLL~~LGI~---------f~i~--s~~~f 345 (417)
T PRK09537 277 RILPDPIKIFEIGPCYRKESDGKEHLEEFTMVNFCQMGSGCTRENLENIIDDFLKHLGID---------YEII--GDNCM 345 (417)
T ss_pred hcccCCeeEEEEeceEecCCCCCCCcceEEEEEEEEeCCchHHHHHHHHHHHHHHHCCCC---------cEEe--cCCcc
Confidence 5 4579999999999988765455667888999999999899999999999999999997 6666 44589
Q ss_pred cCCceEEEEECCEEE--EEEEEeCHHHHHhCCCCCCEEEEEEecccc
Q 007714 547 LPGRQASITHKGKHV--GTFGIVHPEVLNNFDISDPCSFMEIDIENF 591 (592)
Q Consensus 547 ~pgr~A~I~~~g~~i--G~~GelhP~vl~~~~l~~pv~~~El~l~~l 591 (592)
++||+|+|..++..+ |+||++| |+++|||..||++|||+|+.|
T Consensus 346 i~GR~adI~~g~~el~~G~fGEi~--VLe~fGI~~PVva~EIdLerL 390 (417)
T PRK09537 346 VYGDTIDIMHGDLELSSAVVGPIP--LDREWGIDKPWIGAGFGLERL 390 (417)
T ss_pred eecCeEEEEeCCEEEeeEEEEEEe--hhhhcCCCCceEEEEEeHHHH
Confidence 999999999998877 9999996 999999999999999999976
No 16
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=99.89 E-value=2.8e-22 Score=221.09 Aligned_cols=191 Identities=20% Similarity=0.228 Sum_probs=161.4
Q ss_pred CCChHHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCC-----CCce-eeCCCcC------------------
Q 007714 391 KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDE-----STAV-VGNPRTS------------------ 446 (592)
Q Consensus 391 ~~~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~-----~~~v-i~NP~s~------------------ 446 (592)
..++..++.+.+|+.+..+||+|+-+..+-+.-.||+.++.+.+. .+.. +.+|-..
T Consensus 231 ~~~~~~~~~~~~~~~f~~~Gf~e~~~p~vE~~~~nfd~lf~p~~hpaR~~~dtf~~~~~~~~~~~~~~~~~v~~~he~g~ 310 (489)
T PRK04172 231 KKHPYREFIDEVRDILVEMGFEEMKGPLVETEFWNFDALFQPQDHPAREMQDTFYLKYPGIGDLPEELVERVKEVHEHGG 310 (489)
T ss_pred CCChHHHHHHHHHHHHHHCCCEEeeCCeeeecCcccccccCCCCCCCCCccceEEECCcccccCcHHHHHHHHHHHhccC
Confidence 778999999999999999999999988888877778777654331 2345 7665421
Q ss_pred ----------------CcccccccchHHHHHHHHhccCCCCCeeEEEeCcEeecCCCcccccccccEEEEEEeCCCCCHH
Q 007714 447 ----------------DFEVVRTTLMPGILKTIGHNKDHPKPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFE 510 (592)
Q Consensus 447 ----------------e~~~lR~SLlpgLL~~~~~N~~~~~~~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~g~~~~f~ 510 (592)
...+|||++.|++++.++.+ +..|+|+||||+||+.+..+.+..++..+++++++|...+|+
T Consensus 311 ~~~~~~~~y~~~~~~~~~~~LR~~~T~~~~r~l~~~--~~~p~rlFeiGrVFR~e~~d~~~l~Ef~ql~~~i~G~~~~f~ 388 (489)
T PRK04172 311 DTGSRGWGYKWDEDIAKRLVLRTHTTALSARYLASR--PEPPQKYFSIGRVFRPDTIDATHLPEFYQLEGIVMGEDVSFR 388 (489)
T ss_pred CCCCccccCCcchhhhhccccccCChHHHHHHHHhc--CCCCeEEEEecceEcCCCCCcccCCchheEEEEEEeCCCCHH
Confidence 12489999999999999984 346899999999998654332345788899999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCCccEEEEecCCCCccCCceEEEEECC---EEEEEEEEeCHHHHHhCCCCCCEEEEEEe
Q 007714 511 LIHCLVDRIMEVIGTPFVPVGDDTGYYIQRSDEPEFLPGRQASITHKG---KHVGTFGIVHPEVLNNFDISDPCSFMEID 587 (592)
Q Consensus 511 ~ikg~le~ll~~lgi~~~~~~~~~~~~~~~~~~~~f~pgr~A~I~~~g---~~iG~~GelhP~vl~~~~l~~pv~~~El~ 587 (592)
++||+++.++..+|+.. +.+++..+|++||+++|.|+++| +.||++|++||+|+++|||+.||++|||+
T Consensus 389 elkg~l~~ll~~lGi~~--------~~~~~~~~p~~~P~~~~~i~~~g~~w~eiG~~G~l~Pevl~~~gi~~~v~~~el~ 460 (489)
T PRK04172 389 DLLGILKEFYKRLGFEE--------VKFRPAYFPFTEPSVEVEVYHEGLGWVELGGAGIFRPEVLEPLGIDVPVLAWGLG 460 (489)
T ss_pred HHHHHHHHHHHHhCCce--------EEEcCCcCCCCCCeEEEEEEECCCCeEEEEeccccCHHHHHHCCCCCceEEEEEc
Confidence 99999999999999852 78888888999999999999977 79999999999999999999999999999
Q ss_pred cccc
Q 007714 588 IENF 591 (592)
Q Consensus 588 l~~l 591 (592)
++.|
T Consensus 461 le~l 464 (489)
T PRK04172 461 IERL 464 (489)
T ss_pred HHHH
Confidence 9864
No 17
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.
Probab=99.89 E-value=1.8e-22 Score=197.70 Aligned_cols=171 Identities=17% Similarity=0.211 Sum_probs=139.9
Q ss_pred HHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCce-eeCCCcCCcccccccchHHHHHHHHhccCCCCCee
Q 007714 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIK 474 (592)
Q Consensus 396 ~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v-i~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~~~ 474 (592)
+.+.+.+|+.|+++||+|++||+|++.+... ..... ...+ +.||++.+..+||+|++|+|++++++|. +..|++
T Consensus 3 ~~~~~~~r~~l~~~Gf~Ev~t~~l~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~LR~s~~~~l~~~~~~n~-~~~~~~ 77 (211)
T cd00768 3 SKIEQKLRRFMAELGFQEVETPIVEREPLLE-KAGHE---PKDLLPVGAENEEDLYLRPTLEPGLVRLFVSHI-RKLPLR 77 (211)
T ss_pred HHHHHHHHHHHHHcCCEEeEcceecHHHHHH-HcCcc---HhheeeeecCCCCEEEECCCCcHHHHHHHHhhc-ccCCEE
Confidence 5688999999999999999999999986643 22221 2357 9999999999999999999999999999 667899
Q ss_pred EEEeCcEeecCCCcc--cccccccEEEEEEeCCCC----CHHHHHHHHHHHHHHhCCCCCCCCCCccEEEE-ecCCCCc-
Q 007714 475 IYEVGDVVLLDEKKD--VGASCRRRLAALYCGANS----GFELIHCLVDRIMEVIGTPFVPVGDDTGYYIQ-RSDEPEF- 546 (592)
Q Consensus 475 lFEiG~V~~~~~~~~--~~~~~~~~l~~~~~g~~~----~f~~ikg~le~ll~~lgi~~~~~~~~~~~~~~-~~~~~~f- 546 (592)
+||+|+||..+.... ...++..++++.++|... +|+++|++++.+++.+|++. .+.+. ....+.+
T Consensus 78 lfeig~vfr~e~~~~~~~~~~ef~~l~~~~~g~~~~~~~~~~~~~~~~~~~l~~lg~~~-------~~~~~~~~~~~~~~ 150 (211)
T cd00768 78 LAEIGPAFRNEGGRRGLRRVREFTQLEGEVFGEDGEEASEFEELIELTEELLRALGIKL-------DIVFVEKTPGEFSP 150 (211)
T ss_pred EEEEcceeecCCCccccccceeEEEcCEEEEcCCchhHHHHHHHHHHHHHHHHHcCCCc-------ceEEEecCchhhcc
Confidence 999999997654321 224677889988888754 69999999999999999731 14454 3333434
Q ss_pred -cCCceEEEEEC-----CEEEEEEEEeCHHHHHhCCCC
Q 007714 547 -LPGRQASITHK-----GKHVGTFGIVHPEVLNNFDIS 578 (592)
Q Consensus 547 -~pgr~A~I~~~-----g~~iG~~GelhP~vl~~~~l~ 578 (592)
|||++|+|.++ |+.||++|++||.++++|+|.
T Consensus 151 ~~~g~~~~i~~~~~~~~~~eig~~g~~~~~~~~~~~l~ 188 (211)
T cd00768 151 GGAGPGFEIEVDHPEGRGLEIGSGGYRQDEQARAADLY 188 (211)
T ss_pred ccCCceEEEEEEccCCCeEEEeeceeecCchhHhhhhh
Confidence 99999999999 999999999999999999986
No 18
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase. This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys.
Probab=99.89 E-value=5.4e-22 Score=208.65 Aligned_cols=193 Identities=14% Similarity=0.266 Sum_probs=160.3
Q ss_pred CCChHHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcC---------------CCCC---------------------
Q 007714 391 KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLN---------------RQTD--------------------- 434 (592)
Q Consensus 391 ~~~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~---------------~~~~--------------------- 434 (592)
+++|......+||+.-.++||.|++|...+.+.+.+..++ ++..
T Consensus 45 k~hpv~~ti~~lreayl~~gf~e~~np~iv~e~~v~kqfg~ea~avldrcfyl~glprp~vgis~~~~~~i~~~g~~~~~ 124 (533)
T TIGR00470 45 KPHPLMETIERLREAYLRMGFSEMVNPLIVDEMHIYKQFGPEAMAVLDRCFYLAGLPRPDVGLGNEKIEIIENLGIDIDD 124 (533)
T ss_pred CCCcHHHHHHHHHHHHHhcChHhhcCceeecHHHHHHhhCHHHHHHHHHhhhhcCCCCCCcCcCHHHHHHHHHhCCCCCh
Confidence 8899999999999999999999999999999887443321 1100
Q ss_pred -------------------CCCce--eeCCCcCC-----------------------cccccccchHHHHHHHHh-ccCC
Q 007714 435 -------------------ESTAV--VGNPRTSD-----------------------FEVVRTTLMPGILKTIGH-NKDH 469 (592)
Q Consensus 435 -------------------~~~~v--i~NP~s~e-----------------------~~~lR~SLlpgLL~~~~~-N~~~ 469 (592)
+++.+ |+|-+.-+ ..+|||++.|+++.+++. |.++
T Consensus 125 ~~~e~lr~~lh~ykkg~idgddl~~eia~~l~~~d~~~~~ild~vfpefk~l~p~s~~~lLRTHTTpgqirtL~~L~~~~ 204 (533)
T TIGR00470 125 EKKERLREVFHLYKKGAIDGDDLVFEIAKALNVSNEMGLKVLETVFPEFKDLKPESTTLTLRSHMTSGWFITLSSIIDKR 204 (533)
T ss_pred hHHHHHHHHHHHhhcCCCccchhHHHHHHhhCCchHHHHHHHHHhChhhhhcChHhhCcccccCChhHHHHHHHHHhhcC
Confidence 00111 22221111 568999999999999997 7777
Q ss_pred CCCeeEEEeCcEeecCCC-cccccccccEEEEEEeCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEecCC--CCc
Q 007714 470 PKPIKIYEVGDVVLLDEK-KDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVIGTPFVPVGDDTGYYIQRSDE--PEF 546 (592)
Q Consensus 470 ~~~~~lFEiG~V~~~~~~-~~~~~~~~~~l~~~~~g~~~~f~~ikg~le~ll~~lgi~~~~~~~~~~~~~~~~~~--~~f 546 (592)
..|+|+|++|+||++++. +.++..+.+++.++++++.++|.++||+++.+++.+|... +.|+++++ ++|
T Consensus 205 ~~PiRIFsIGRVfRrD~~~DaTHl~eFhQlEGLVVdedVSf~DLKgvLe~LLr~LG~~~--------vRFRPsekrskyY 276 (533)
T TIGR00470 205 KLPLKLFSIDRCFRREQREDRSHLMTYHSASCVVVDEEVSVDDGKAVAEGLLAQFGFTK--------FRFRPDEKKSKYY 276 (533)
T ss_pred CCCeEEEeeeeEEecCCCCCCccCceeeeEEEEEECCCCCHHHHHHHHHHHHHHhCCce--------EEeccCcCCCCCc
Confidence 789999999999999854 4488899999999999999999999999999999998743 78898865 889
Q ss_pred cCCceEEEEECC------EEEEEEEEeCHHHHHhCCCCCCEEEEEEecccc
Q 007714 547 LPGRQASITHKG------KHVGTFGIVHPEVLNNFDISDPCSFMEIDIENF 591 (592)
Q Consensus 547 ~pgr~A~I~~~g------~~iG~~GelhP~vl~~~~l~~pv~~~El~l~~l 591 (592)
+|+++|+|.+.+ ..||.+|++||+||++|||+.|+++|+|.++.|
T Consensus 277 FPFTEaEVdV~~~k~~gWiEIgG~GmVhPeVL~~~GId~PV~AFGIGVERl 327 (533)
T TIGR00470 277 IPETQTEVYAYHPKLGEWIEVATFGVYSPIALAKYNIDVPVMNLGLGVERL 327 (533)
T ss_pred CCCceEEEEEEccCCCceEEEEeccccCHHHHHHcCCCCceEEEEecHHHH
Confidence 999999999855 689999999999999999999999999999865
No 19
>PF03483 B3_4: B3/4 domain; InterPro: IPR005146 This entry represents the B3/B4 domain found in tRNA synthetase beta subunits as well as in some non-tRNA synthetase proteins. This domain has a 3-layer structure, and contains a beta-sandwich fold of unusual topology, and contains a putative tRNA-binding structural motif []. In Thermus thermophilus, both the catalytic alpha- and the non-catalytic beta-subunits comprise the characteristic fold of the class II active-site domains. The presence of an RNA-binding domain, similar to that of the U1A spliceosomal protein, in the beta-subunit of tRNA synthetase indicates structural relationships among different families of RNA-binding proteins. Aminoacyl-tRNA synthetases can catalyse editing reactions to correct errors produced during amino acid activation and tRNA esterification, in order to prevent the attachment of incorrect amino acids to tRNA. The B3/B4 domain of the beta subunit contains an editing site, which lies close to the active site on the alpha subunit []. Disruption of this site abolished tRNA editing, a process that is essential for faithful translation of the genetic code.; GO: 0003723 RNA binding, 0004826 phenylalanine-tRNA ligase activity; PDB: 3L4G_P 2CXI_B 3PCO_D 2AKW_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 1B70_B 2RHS_D ....
Probab=99.86 E-value=4.3e-22 Score=190.66 Aligned_cols=135 Identities=27% Similarity=0.340 Sum_probs=106.6
Q ss_pred CCCeEEEEEEeccccCcCCcCCHHHHHHHHHhcCCC-CCcEEEeee------------eeccccCCCeEEEecCCCceEE
Q 007714 119 IRPYVVCAVLRDISFDEASYNSFIDLQDKLHQNICR-RRTLVAIGT------------HDLDTLQGPFTYEALPPSHINF 185 (592)
Q Consensus 119 ~rp~~~~~vi~~V~~~~~~~~s~~~lq~kL~~~~~r-~r~~VdIgn------------~Dld~i~~p~~y~~~~~~~i~f 185 (592)
.||+|.+++++||+... +||.|||+||.+.+.+ .|++|||.| ||+|||.+++.++...++ .+|
T Consensus 1 ~c~~~~~~~~~~i~~~~---~sp~~L~~rL~~~g~~~iN~lvDi~N~i~l~~g~pi~~~D~dki~~~i~~~~~~~~-e~~ 76 (174)
T PF03483_consen 1 ACRRYFSRVIKNINKNR---PSPEWLKRRLKKSGILPINNLVDIQNYISLETGQPIGAYDLDKIKGPITLRLAKGG-EKF 76 (174)
T ss_dssp CSSEEEEEEEESB-TTH---HH-HHHHHHHHHTT---HHHHHHHHHHHHHHHTTEEEEEEGGGTBSEEEEEEESTT-EEE
T ss_pred CcchhhEEEEECCCCCc---CCHHHHHHHHHhCCCcccccHHHHHHHHHHHhCCCCchhhHhHCCCCEEEEEecCC-ceE
Confidence 49999999999999664 5899999999998887 588999877 899999999998887765 599
Q ss_pred EeCCCcccCChhHHHhhhccccccccccccccCCCceeEEEeCCCCeeecCCcccCCcceeecCCeEEEEEecccC----
Q 007714 186 VPLKQTRDFTADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNRTVLSLPPIINGAHSAITLKTKNVFIECTATD---- 261 (592)
Q Consensus 186 ~~L~~~~~~~~~el~~l~~~~~~l~~y~~i~~~~~~~~vI~D~~~~vlslagIigg~~s~It~~T~nI~iE~a~~D---- 261 (592)
.|+++. +.++. +.+|||+|+++ ++|+||||||++|+|+++|||||||++++|
T Consensus 77 ~~l~~~--------------~~~l~---------~~~~vi~D~~~-~i~~~gi~~~~~t~i~~~T~~ilie~~~~~~~~i 132 (174)
T PF03483_consen 77 TPLGGK--------------EVELD---------EGDLVICDDNG-IISIAGIIGSERTKITENTKNILIEVAGFDPKSI 132 (174)
T ss_dssp EBTTSE--------------EEEEC---------TTCEEEECTTC-EEEETTTEEBSTTC--TT--EEEEEEEES-HHHH
T ss_pred EECCCc--------------eeecc---------ceEEEEEECCC-CEeeccccCCccceeEcCCCeEEEEEeecCHHHH
Confidence 999752 23332 24599999997 789999999999999999999999999755
Q ss_pred ----------------------hhhHHHHHHHHHHHHHHhcC
Q 007714 262 ----------------------LTKAKIVLNTMVTIFSEYCK 281 (592)
Q Consensus 262 ----------------------~~~~~~al~~~~~~l~~~~~ 281 (592)
+..+..|+++++++|.++||
T Consensus 133 ~~~~~~~~l~t~~~~r~~k~~~~~~~~~a~~~~~~ll~~~~g 174 (174)
T PF03483_consen 133 RKSSKKLKLRTDASYRYEKGIDPNLLLNALNRATSLLLEICG 174 (174)
T ss_dssp HHHHHHTT---HHHHHHHH-S-TTCHHHHHHHHHHHHHHHST
T ss_pred HHHHHhcCcccHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcC
Confidence 45677888888888888885
No 20
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=99.85 E-value=9.3e-20 Score=188.57 Aligned_cols=186 Identities=18% Similarity=0.187 Sum_probs=157.4
Q ss_pred CCChHHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCC-----CCce-eeCCCcCCcccccccchHHHHHHHH
Q 007714 391 KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDE-----STAV-VGNPRTSDFEVVRTTLMPGILKTIG 464 (592)
Q Consensus 391 ~~~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~-----~~~v-i~NP~s~e~~~lR~SLlpgLL~~~~ 464 (592)
+.+|.+.+.+.+|+.|+++||+|+.++.+++...+|+.|+.+.+. .+.+ | +++.+|||++.|+++++++
T Consensus 106 ~~HPl~~~~~~Ir~if~~mGF~ev~gpeIes~~~NFdaLn~P~dHPaR~~~DTfyI-----~~~~lLRThTSp~qir~L~ 180 (339)
T PRK00488 106 SLHPITQTIEEIEDIFVGMGFEVAEGPEIETDYYNFEALNIPKDHPARDMQDTFYI-----DDGLLLRTHTSPVQIRTME 180 (339)
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEEeCCccccHHHHHHHhCCCCCCcccccCceEEE-----cCCceeeccCcHHHHHHHH
Confidence 789999999999999999999999999999999999999876542 1456 7 5789999999999999998
Q ss_pred hccCCCCCeeEEEeCcEeecCCCcccccccccEEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCCCCCCCCccEEEEecCC
Q 007714 465 HNKDHPKPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVI-GTPFVPVGDDTGYYIQRSDE 543 (592)
Q Consensus 465 ~N~~~~~~~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~g~~~~f~~ikg~le~ll~~l-gi~~~~~~~~~~~~~~~~~~ 543 (592)
. +..|+|+||+|+||+.+..+.++....+++.+++.++.++|.++||.|+.+++.+ |-.. ...++|+..
T Consensus 181 ~---~~~Pirif~~G~VyR~D~~DatH~~~FhQleglvvd~~vtf~dLK~~L~~fl~~~fg~~~-------~~R~rpsyF 250 (339)
T PRK00488 181 K---QKPPIRIIAPGRVYRNDSDDATHSPMFHQVEGLVVDKNISFADLKGTLEDFLKAFFGEDV-------KIRFRPSYF 250 (339)
T ss_pred h---cCCCeEEEEeeeEEEcCCCCcccCcceeeEEEEEEeCCCCHHHHHHHHHHHHHHHcCCCC-------eEEecCCCC
Confidence 6 4578999999999998865567777889999999999999999999999999988 5221 278888888
Q ss_pred CCccCCceEEEEEC--------------CEEEEEEEEeCHHHHHhCCCCC---CEEEEEEecccc
Q 007714 544 PEFLPGRQASITHK--------------GKHVGTFGIVHPEVLNNFDISD---PCSFMEIDIENF 591 (592)
Q Consensus 544 ~~f~pgr~A~I~~~--------------g~~iG~~GelhP~vl~~~~l~~---pv~~~El~l~~l 591 (592)
|+-.|+...+|.+. --.||-.|.+||+||++.|++. ..++|-+-++.|
T Consensus 251 PFTePS~Evdv~~~~~~g~gc~~ck~~~WiEilG~Gmv~p~vl~~~gid~~~~~G~AfG~GleRl 315 (339)
T PRK00488 251 PFTEPSAEVDVSCFKCGGKGCRVCKGTGWLEILGCGMVHPNVLRNVGIDPEEYSGFAFGMGIERL 315 (339)
T ss_pred CCCCCceEEEEEEeccCCCcccccCCCCceEEeccCccCHHHHHHcCCCcccceEEEEeecHHHH
Confidence 87778877777662 1368889999999999999974 357888777654
No 21
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=99.82 E-value=1.3e-20 Score=152.92 Aligned_cols=70 Identities=31% Similarity=0.615 Sum_probs=59.5
Q ss_pred ceEEEeehhHHhhccCCcCCHHHHHHHHHhcCCeEEEcCCCCCcceEEEEcCCCCcccCCCchhHhHHHHHhCC
Q 007714 306 AYNMEVSLSYINHTIGVSLEAEEVTSLLNRMQLHAERSASGNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYGY 379 (592)
Q Consensus 306 ~~~i~l~~~~i~~~LG~~l~~~~i~~~L~~lg~~~~~~~~~~~~~~~~V~vP~~R~DI~~~~DliEEIar~yGy 379 (592)
+++|+++.++++++||++++.+++.++|++|||++...++ +. |.|+||+||.||+|++||||||||+|||
T Consensus 1 p~~i~~~~~~i~~~lG~~i~~~~i~~~L~~lg~~~~~~~~--~~--~~v~vP~~R~Di~~~~DliEEiaR~yGY 70 (70)
T PF03484_consen 1 PKKITLSLDKINKLLGIDISPEEIIKILKRLGFKVEKIDG--DT--LEVTVPSYRFDIEHEEDLIEEIARIYGY 70 (70)
T ss_dssp -EEEEEEHHHHHHHHTS---HHHHHHHHHHTT-EEEE-CT--TE--EEEEEETTSTT-SSHHHHHHHHHHHHTG
T ss_pred CeEEEecHHHHHHHhCCCCCHHHHHHHHHHCCCEEEECCC--CE--EEEEcCCCcCCcCcccHHHHHHHHHhCC
Confidence 4789999999999999999999999999999999987432 36 9999999999999999999999999998
No 22
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=99.79 E-value=2.1e-19 Score=146.55 Aligned_cols=70 Identities=34% Similarity=0.597 Sum_probs=64.1
Q ss_pred eEEEeehhHHhhccCCcCCHHHHHHHHHhcCCeEEEcCCCCCcceEEEEcCCCCcccCCCchhHhHHHHHhCC
Q 007714 307 YNMEVSLSYINHTIGVSLEAEEVTSLLNRMQLHAERSASGNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYGY 379 (592)
Q Consensus 307 ~~i~l~~~~i~~~LG~~l~~~~i~~~L~~lg~~~~~~~~~~~~~~~~V~vP~~R~DI~~~~DliEEIar~yGy 379 (592)
++++++.+++++++|.+++.+++.++|++|||.++..+++ +. |.|.+|+||+||+|++||||||||+|||
T Consensus 2 ~~i~~~~~~i~~llG~~i~~~ei~~~L~~lg~~~~~~~~~-~~--~~v~~P~~R~Di~~~~DliEei~r~~Gy 71 (71)
T smart00874 2 RTITLRRERINRLLGLDLSAEEIEEILKRLGFEVEVSGDD-DT--LEVTVPSYRFDILIEADLIEEVARIYGY 71 (71)
T ss_pred cEEEecHHHHHHHHCCCCCHHHHHHHHHHCCCeEEecCCC-Ce--EEEECCCCccccCcccHHHHHHHHHhCC
Confidence 5799999999999999999999999999999999764322 35 9999999999999999999999999998
No 23
>PLN02788 phenylalanine-tRNA synthetase
Probab=99.68 E-value=2.1e-15 Score=159.79 Aligned_cols=182 Identities=15% Similarity=0.115 Sum_probs=151.4
Q ss_pred CCChHHHHHHHHHHHHHHC---CceEEee-ccccChHHHHHHcCCCCCC-----CCce-eeCCCcCCcccccccchHHHH
Q 007714 391 KPLALNEFSDLMRLEIAMN---GFTEVLT-WILCSSKEISTMLNRQTDE-----STAV-VGNPRTSDFEVVRTTLMPGIL 460 (592)
Q Consensus 391 ~~~~~~~~~~~lr~~l~~~---Gf~Ev~t-~sl~s~~~~~~~~~~~~~~-----~~~v-i~NP~s~e~~~lR~SLlpgLL 460 (592)
..+|...+.+.+++.+.++ ||.++-. ....+...||+.++.+.+. .+.. | | +-.+|||.--+.-.
T Consensus 66 ~~HPl~~~~~~i~~~f~~~~~~gf~~~~~~~~iv~~~~NFD~L~~P~dHPaR~~~DTfy~-~----~~~lLRTHTSa~q~ 140 (402)
T PLN02788 66 PDHPLGILKNAIYDYFDENYSNKFKKFDDLSPIVSTKQNFDDVLVPPDHVSRSYNDTYYV-D----AQTVLRCHTSAHQA 140 (402)
T ss_pred CCChHHHHHHHHHHHHhhcccCCcEEecCCCCccchhhhhhhhCCCCCCCccCccceEEe-c----CCccccCCCcHHHH
Confidence 7799999999999999998 9998876 7788888899999876542 2345 6 3 35799999999999
Q ss_pred HHHHhccCCCCCeeEEEeCcEeecCCCcccccccccEEEEEEeC------------CCCCHHHHHHHHHHHHHHh-CCCC
Q 007714 461 KTIGHNKDHPKPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCG------------ANSGFELIHCLVDRIMEVI-GTPF 527 (592)
Q Consensus 461 ~~~~~N~~~~~~~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~g------------~~~~f~~ikg~le~ll~~l-gi~~ 527 (592)
++++.+. -++|-+|+||++|.-+.++.....++-++... ...+|.++||.|+.++..+ |...
T Consensus 141 ~~l~~~~-----~~~~~~g~VyRrD~iD~tH~p~FhQ~EG~~v~~~~~~~~~~~~~~~~~~~dLKg~Le~l~~~lfg~~~ 215 (402)
T PLN02788 141 ELLRAGH-----THFLVTGDVYRRDSIDATHYPVFHQMEGVRVFSPEEWEASGLDGTDLAAEDLKKTLEGLARHLFGDVE 215 (402)
T ss_pred HHHHhCC-----CcEEEEeeEeecCCCCcccCccceeEEEEEEecccccccccccccccCHHHHHHHHHHHHHHhcCCCc
Confidence 9999632 28999999999887555666666677666553 2367999999999999988 8742
Q ss_pred CCCCCCccEEEEecCCCCccCCceEEEEECCE---EEEEEEEeCHHHHHhCCCCC-CEEEEEEecccc
Q 007714 528 VPVGDDTGYYIQRSDEPEFLPGRQASITHKGK---HVGTFGIVHPEVLNNFDISD-PCSFMEIDIENF 591 (592)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~f~pgr~A~I~~~g~---~iG~~GelhP~vl~~~~l~~-pv~~~El~l~~l 591 (592)
+.++++..|++|||++|+|+++|+ .+| +|++||+|++++|++. .+++|||+|+.|
T Consensus 216 --------~r~~~s~fPft~Ps~e~dI~~~g~WlEvlG-~G~vhP~Vl~~~gi~~~~g~AfglgLeRL 274 (402)
T PLN02788 216 --------MRWVDAYFPFTNPSFELEIFFKGEWLEVLG-CGVTEQEILKNNGRSDNVAWAFGLGLERL 274 (402)
T ss_pred --------eEEecCCCCCCCCCeEEEEEECCEEEEEee-EEEEcHHHHHHcCCCCCcEEEEEEeHHHH
Confidence 677888889999999999999998 788 9999999999999997 689999999865
No 24
>smart00873 B3_4 B3/4 domain. This domain is found in tRNA synthetase beta subunits as well as in some non tRNA synthetase proteins.
Probab=99.61 E-value=1.8e-15 Score=144.65 Aligned_cols=143 Identities=21% Similarity=0.312 Sum_probs=103.8
Q ss_pred CCeEEEEEEeccccCcCCcCCHHHHHHHHHhcCCC-CCcEEEeeeeeccccCCCeE-EEe--cCCCceEEEeCCCcccCC
Q 007714 120 RPYVVCAVLRDISFDEASYNSFIDLQDKLHQNICR-RRTLVAIGTHDLDTLQGPFT-YEA--LPPSHINFVPLKQTRDFT 195 (592)
Q Consensus 120 rp~~~~~vi~~V~~~~~~~~s~~~lq~kL~~~~~r-~r~~VdIgn~Dld~i~~p~~-y~~--~~~~~i~f~~L~~~~~~~ 195 (592)
||++.++++++++.. ++||+|||+|||+++++ +|.+||+.||++.+.+.|+. |++ +.++ +.+|+..+ .
T Consensus 1 ~~~~~~~~~~~~~~~---~~s~~~l~~rL~~~~~~~~n~~vdi~n~~~l~~g~p~~~~D~d~i~~~---~l~l~~~~--~ 72 (174)
T smart00873 1 CPRYLGRVIRGVKNT---RPSPEWLQERLHRAGIRPINNVVDITNYVSLETGQPLHAFDLDKIKGK---DIPLRRAK--E 72 (174)
T ss_pred CCcEEEEEEECCCCC---CCCHHHHHHHHHHcCCCCcchhhhHHHHHHHHhCCCCeeEcHHHcCCC---eEEEEECC--C
Confidence 788999999998865 25999999999999887 58899999977777777722 333 2221 23332211 2
Q ss_pred hhHHHhhhccccccccccccccCCCceeEEEeCCCCeeecCCcccCCcceeecCCeEEEEEec-----------------
Q 007714 196 ADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNRTVLSLPPIINGAHSAITLKTKNVFIECT----------------- 258 (592)
Q Consensus 196 ~~el~~l~~~~~~l~~y~~i~~~~~~~~vI~D~~~~vlslagIigg~~s~It~~T~nI~iE~a----------------- 258 (592)
++++..+.+++..+.+ ..+|++|+++ +++++|+||+.+++|+++|+++++|++
T Consensus 73 ~e~~~~l~~~~~~~~~---------~~~vi~d~~~-~~~i~g~~g~~~~~~~~~t~~i~~~~~~~~~~~i~~~~~~~~i~ 142 (174)
T smart00873 73 GETFETLDGKEYELDE---------GDLVIADDEG-PLALAGVMGGEESEVTENTTNIFLEPAIFSPRTIRITARTLNLF 142 (174)
T ss_pred CCEEEecCCcEEecCC---------CCEEEEeCCc-CEEEEEEecCCcceecCCCCEEEEEEEEeCcHHHHHHHHHcCCc
Confidence 2333334444444432 3489999885 899999999999999999999999998
Q ss_pred ---------ccChhhHHHHHHHHHHHHHHhc
Q 007714 259 ---------ATDLTKAKIVLNTMVTIFSEYC 280 (592)
Q Consensus 259 ---------~~D~~~~~~al~~~~~~l~~~~ 280 (592)
|+|+..+..|++.++.+|.++|
T Consensus 143 ~~~~~~~~~g~~~~~~~~al~~l~~ll~~~~ 173 (174)
T smart00873 143 TDASGRFERGVDPELVELALDRAAALLLEIC 173 (174)
T ss_pred ceeeecccCCCCHHHHHHHHHHHHHHHHHhh
Confidence 3566677778888888887765
No 25
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=1.2e-13 Score=142.47 Aligned_cols=210 Identities=19% Similarity=0.175 Sum_probs=167.0
Q ss_pred HHHHHhCCCCCCCCCCCCC----CCChHHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCC-----CCce-ee
Q 007714 372 DVAIAYGYNNIPKRKPASV----KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDE-----STAV-VG 441 (592)
Q Consensus 372 EIar~yGydni~~~~p~~~----~~~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~-----~~~v-i~ 441 (592)
+..+-.=+..+..++|... +.+|...+.+.+++++.++||+|+-..-..+.-.+|+.++.+.+. .+.. +.
T Consensus 86 ~~~~~l~~e~~dv~lp~~~~~~G~~Hpl~~~~e~i~~iF~~mGF~~~~gp~IE~d~~NFDaLn~P~dHPARdmqDTFy~~ 165 (335)
T COG0016 86 GLWERLAFEKIDVTLPGRRIYPGSLHPLTQTIEEIEDIFLGMGFTEVEGPEIETDFYNFDALNIPQDHPARDMQDTFYLK 165 (335)
T ss_pred HHHHhhhccCCCcCCCCccCCCCCcChHHHHHHHHHHHHHHcCceeccCCcccccccchhhhcCCCCCCcccccceEEEc
Confidence 3334444555555555432 789999999999999999999999999777877899999876542 2345 55
Q ss_pred CCCcCCcccccccchHHHHHHHHhccCCCCCeeEEEeCcEeecCCCcccccccccEEEEEEeCCCCCHHHHHHHHHHHHH
Q 007714 442 NPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIME 521 (592)
Q Consensus 442 NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~g~~~~f~~ikg~le~ll~ 521 (592)
+ +.+..+|||.--|--.+.++.|... |+|+|-+|+||..|..+.++..+..++-+++.++..+|.++||.++.+++
T Consensus 166 ~--~~~~~lLRTHTs~vq~R~l~~~~~~--P~k~~~~grvyR~D~~DaTHs~~FhQiEGlvvd~~~s~~~Lkg~L~~f~~ 241 (335)
T COG0016 166 D--DREKLLLRTHTSPVQARTLAENAKI--PIKIFSPGRVYRNDTVDATHSPEFHQIEGLVVDKNISFADLKGTLEEFAK 241 (335)
T ss_pred C--CCCceeecccCcHhhHHHHHhCCCC--CceEecccceecCCCCCcccchheeeeEEEEEeCCccHHHHHHHHHHHHH
Confidence 4 3336799999999999999887543 89999999999998776788888999999999999999999999999999
Q ss_pred HhCCCCCCCCCCccEEEEecCCCCccCCceEEEEECCE----EEEEEEEeCHHHHHhCC-CCCCEE--EEEEecccc
Q 007714 522 VIGTPFVPVGDDTGYYIQRSDEPEFLPGRQASITHKGK----HVGTFGIVHPEVLNNFD-ISDPCS--FMEIDIENF 591 (592)
Q Consensus 522 ~lgi~~~~~~~~~~~~~~~~~~~~f~pgr~A~I~~~g~----~iG~~GelhP~vl~~~~-l~~pv~--~~El~l~~l 591 (592)
.++-... ...|+|+..|+-.|.--.+|++.+. .||-.|.+||+||++.| .+.++. +|-+-++.|
T Consensus 242 ~~fg~~~------~vRfrpsyFPFTEPS~Evdv~~~~~~~WlEi~G~Gmv~P~VL~~~G~~~~~~~GfAfGlGlERl 312 (335)
T COG0016 242 KFFGEDV------KVRFRPSYFPFTEPSAEVDVYCPGCGGWLEILGCGMVHPNVLEAVGIDPEEYSGFAFGLGLERL 312 (335)
T ss_pred HhcCCCc------ceEeecCCCCCCCCeEEEEEEEcCCCCEEEEecccccCHHHHHhcCCCCCcceEEEEeecHHHH
Confidence 9874321 1788998888888877777787643 68889999999999999 555655 777766643
No 26
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=99.56 E-value=2.4e-13 Score=146.64 Aligned_cols=193 Identities=15% Similarity=0.159 Sum_probs=159.7
Q ss_pred CCChHHHHHHHHHHHHHHCCceEEe-eccccChHHHHHHcCCCCCC-----CCce-eeCCCcC-----------------
Q 007714 391 KPLALNEFSDLMRLEIAMNGFTEVL-TWILCSSKEISTMLNRQTDE-----STAV-VGNPRTS----------------- 446 (592)
Q Consensus 391 ~~~~~~~~~~~lr~~l~~~Gf~Ev~-t~sl~s~~~~~~~~~~~~~~-----~~~v-i~NP~s~----------------- 446 (592)
..||..++.+.+|++|.++||+|+- .....+.-.||+.++.+.+. .+.. |.+|...
T Consensus 219 ~~HPl~~~~~ei~~if~~mGF~e~~~g~~ves~f~NFDaL~~PqdHPARd~qDTFyl~~~~~~~~~p~~~~erVk~~He~ 298 (492)
T PLN02853 219 HLHPLLKVRQQFRKIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLKAPATTRQLPEDYVERVKTVHES 298 (492)
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEecCCCCeechhhhhhhhcCCCCCCCCCccceEEEcCccccccCcHHHHHHHHHHHhc
Confidence 8899999999999999999999994 44556666788888766542 2456 8877543
Q ss_pred -----------------CcccccccchHHHHHHHHhccCCC-CCeeEEEeCcEeecCCCcccccccccEEEEEEeCCCCC
Q 007714 447 -----------------DFEVVRTTLMPGILKTIGHNKDHP-KPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSG 508 (592)
Q Consensus 447 -----------------e~~~lR~SLlpgLL~~~~~N~~~~-~~~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~g~~~~ 508 (592)
...+|||.-.+.-.+.++.+.+.+ .|+++|-+|+||+++.-+.++..+..++-+++.+...+
T Consensus 299 G~~gS~Gw~y~W~~~~a~~~vLRTHTTa~s~r~L~~~~~~~~~p~k~fsigrVfR~d~iDatH~~eFhQ~EG~vvd~~~t 378 (492)
T PLN02853 299 GGYGSIGYGYDWKREEANKNLLRTHTTAVSSRMLYKLAQKGFKPKRYFSIDRVFRNEAVDRTHLAEFHQVEGLVCDRGLT 378 (492)
T ss_pred CCCCccccccccccchhcccccCCCCCHHHHHHHHHhhccCCCCcEEEeccceecCCCCCcccCccceeEEEEEEeCCCC
Confidence 358999999999999999765443 47999999999998875667888899999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCccEEEEecCCCCccCCceEEEEEC--C--EEEEEEEEeCHHHHHhCCCCC--CEE
Q 007714 509 FELIHCLVDRIMEVIGTPFVPVGDDTGYYIQRSDEPEFLPGRQASITHK--G--KHVGTFGIVHPEVLNNFDISD--PCS 582 (592)
Q Consensus 509 f~~ikg~le~ll~~lgi~~~~~~~~~~~~~~~~~~~~f~pgr~A~I~~~--g--~~iG~~GelhP~vl~~~~l~~--pv~ 582 (592)
|.+++|.++.++..+|... +.|+|+..|+-.|+....++.. | -.||-.|.+||+|++..|++. +++
T Consensus 379 ~~~L~g~l~~f~~~lg~~~--------~RfrP~yfPfTEPS~Ei~v~~~~~gkWiEi~g~Gm~rpevl~~~Gi~~~~~~~ 450 (492)
T PLN02853 379 LGDLIGVLEDFFSRLGMTK--------LRFKPAYNPYTEPSMEIFSYHEGLKKWVEVGNSGMFRPEMLLPMGLPEDVNVI 450 (492)
T ss_pred HHHHHHHHHHHHHHcCCce--------EEEecCCCCCCCCeEEEEEEecCCCCEEEEecCcCcCHHHHHhCCCCCcceEE
Confidence 9999999999999998743 7889988888888777777654 4 378999999999999999964 488
Q ss_pred EEEEecccc
Q 007714 583 FMEIDIENF 591 (592)
Q Consensus 583 ~~El~l~~l 591 (592)
+|-|-|+.+
T Consensus 451 A~GlGleRl 459 (492)
T PLN02853 451 AWGLSLERP 459 (492)
T ss_pred EEEecHHHH
Confidence 888888754
No 27
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=99.52 E-value=6.5e-13 Score=144.04 Aligned_cols=193 Identities=17% Similarity=0.153 Sum_probs=160.7
Q ss_pred CCChHHHHHHHHHHHHHHCCceEEeec-cccChHHHHHHcCCCCCC-----CCce-eeCCCcCC----------------
Q 007714 391 KPLALNEFSDLMRLEIAMNGFTEVLTW-ILCSSKEISTMLNRQTDE-----STAV-VGNPRTSD---------------- 447 (592)
Q Consensus 391 ~~~~~~~~~~~lr~~l~~~Gf~Ev~t~-sl~s~~~~~~~~~~~~~~-----~~~v-i~NP~s~e---------------- 447 (592)
..||..++.+.+|++|.++||+|+-+. ...+.-.||+.++.+.+. .+.. |.+|-..+
T Consensus 227 ~~HPl~~~~~~i~~if~~mGF~e~~~~~~ves~f~NFDaL~~PqdHPARd~~DTFyl~~~~~~~~~~~p~~~~~~Vk~~H 306 (494)
T PTZ00326 227 NLHPLLKVRREFREILLEMGFEEMPTNRYVESSFWNFDALFQPQQHPARDAQDTFFLSKPETSKVNDLDDDYVERVKKVH 306 (494)
T ss_pred CCChHHHHHHHHHHHHHhCCCEEecCCCCccccchhhhhhcCCCCCCCCCcCceEEEcCccccccccCcHHHHHHHHHHh
Confidence 889999999999999999999999765 456667789988866542 2457 88875442
Q ss_pred --------------------cccccccchHHHHHHHHhccCC-----C-CCeeEEEeCcEeecCCCcccccccccEEEEE
Q 007714 448 --------------------FEVVRTTLMPGILKTIGHNKDH-----P-KPIKIYEVGDVVLLDEKKDVGASCRRRLAAL 501 (592)
Q Consensus 448 --------------------~~~lR~SLlpgLL~~~~~N~~~-----~-~~~~lFEiG~V~~~~~~~~~~~~~~~~l~~~ 501 (592)
..+|||...+...+.++.+.+. . .|+|+|-+|+||+.+..+.++..+..++-++
T Consensus 307 e~G~~gS~Gw~y~W~~e~a~~~vLRtHtTa~~aR~l~~~~~~~~~~~~~~P~k~fsigrVfR~d~~DatH~~eFhQ~Eg~ 386 (494)
T PTZ00326 307 EVGGYGSIGWRYDWKLEEARKNILRTHTTAVSARMLYKLAQEYKKTGPFKPKKYFSIDRVFRNETLDATHLAEFHQVEGF 386 (494)
T ss_pred ccCCcCCcccccccccchhccccccCCCCHHHHHHHHhhccccccccCCCCceEEecCCEecCCCCCCCcCceeEEEEEE
Confidence 5799999999999999987542 2 3799999999999887666788899999999
Q ss_pred EeCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEecCCCCccCCceEEEEEC--C--EEEEEEEEeCHHHHHhCCC
Q 007714 502 YCGANSGFELIHCLVDRIMEVIGTPFVPVGDDTGYYIQRSDEPEFLPGRQASITHK--G--KHVGTFGIVHPEVLNNFDI 577 (592)
Q Consensus 502 ~~g~~~~f~~ikg~le~ll~~lgi~~~~~~~~~~~~~~~~~~~~f~pgr~A~I~~~--g--~~iG~~GelhP~vl~~~~l 577 (592)
+.|...++.+++|++..++..+|+.. ..|+|+..|+-.|+-...++.. | -.||-.|.+||+|++..|+
T Consensus 387 vi~~~~s~~~L~~~l~~f~~~lG~~~--------~RfrP~yfPfTEPS~Ev~v~~~~~gkWIEIgg~Gm~rpevL~~~Gi 458 (494)
T PTZ00326 387 VIDRNLTLGDLIGTIREFFRRIGITK--------LRFKPAFNPYTEPSMEIFGYHPGLKKWVEVGNSGIFRPEMLRPMGF 458 (494)
T ss_pred EEeCCCCHHHHHHHHHHHHHhcCCCc--------eEEecCCCCCCCCeeEEEEEecCCCcEEEEeCcCccCHHHHHhcCC
Confidence 99999999999999999999999853 7889988888888766666664 3 4799999999999999999
Q ss_pred CC--CEEEEEEecccc
Q 007714 578 SD--PCSFMEIDIENF 591 (592)
Q Consensus 578 ~~--pv~~~El~l~~l 591 (592)
+. +++++-+-|+.+
T Consensus 459 ~~~~~~~A~GlGleRl 474 (494)
T PTZ00326 459 PEDVTVIAWGLSLERP 474 (494)
T ss_pred CCcceEEEEEecHHHH
Confidence 64 488888888754
No 28
>COG0072 PheT Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=8.3e-14 Score=158.30 Aligned_cols=217 Identities=23% Similarity=0.233 Sum_probs=173.1
Q ss_pred CCeEEechHHHHHHhCCCCCHHHHHHHhhhcCCcccccchhHHHHhhhccccccCCCCCCceEEEEecCCCcccccCHHH
Q 007714 1 MPTVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEVPANRYDLLCLEG 80 (592)
Q Consensus 1 Mp~i~~~~~~l~~~~g~~~~~~e~~~~l~~~g~e~e~~~~~~~~~~~~~~~~~~~~~~~~d~i~~ieit~NR~Dlls~~G 80 (592)
||++..++..|.+.+-.-.......+.|.++|++.|..... -.+++.++.| |++|..|
T Consensus 1 ~g~~~~~~~~L~d~i~e~~~tpnr~D~ls~~GiarE~aa~~---------------------~~~~~~~~~~-d~~~~~~ 58 (650)
T COG0072 1 MPTIVREYLDLDDLIIEISITPNRADCLSMLGIARELAAEY---------------------DLKLEFPKIR-DLESAEG 58 (650)
T ss_pred CCchhhhhhhhccceeeccCCCCHHHhhccccceeehhhhc---------------------CCcccccccc-ccccccc
Confidence 89999999999999732223458899999999999865432 3788888888 9999999
Q ss_pred HHHHHHHhcCCCCCCceeecCCCCCCcceEEEeecCCCCCCeEEEEEEeccccCcCCcCCHHHHHHHHHhcCCCCCcEEE
Q 007714 81 IAQALRVFNKQQEIPKYTLSDVSKDSMLQMHVKPETSSIRPYVVCAVLRDISFDEASYNSFIDLQDKLHQNICRRRTLVA 160 (592)
Q Consensus 81 iARel~a~~g~~~~p~~~~~~~~~~~~~~i~V~~~~~~~rp~~~~~vi~~V~~~~~~~~s~~~lq~kL~~~~~r~r~~Vd 160 (592)
+|+ ..+++...- .+... .....+.+.......+|+...++++++.+. ++++++++|+++|+.+||++..+|
T Consensus 59 ~~~--~~~v~ie~~-~~~~~----~~~~~~i~~v~~~~~sP~~~~~~l~~~gir--~in~lVDitnyv~l~~Gqp~h~~d 129 (650)
T COG0072 59 LAR--KIFLEIEAG-KYACP----RYAGRVIKGVKVNAPSPLWLQARLRGVGIR--PINNLVDITNYVHLELGQPRHAFD 129 (650)
T ss_pred ccc--eeEeecccc-cccCC----ccceEEEECcccCCCCCHHHHHHHHhcCCC--cHHHHHHHHHHHHHHhCCcchHhh
Confidence 999 444443211 12211 112334444444578999999999999998 678999999999999999999999
Q ss_pred eeeeeccccCCCeEEEecCCCceEEEeCCCcccCChhHHHhhhccccccc--cccccccCCCceeEEEeCCCCeeecCCc
Q 007714 161 IGTHDLDTLQGPFTYEALPPSHINFVPLKQTRDFTADELMEFYKSDLKLK--KYLHIIENSPLYPVLYDQNRTVLSLPPI 238 (592)
Q Consensus 161 Ign~Dld~i~~p~~y~~~~~~~i~f~~L~~~~~~~~~el~~l~~~~~~l~--~y~~i~~~~~~~~vI~D~~~~vlslagI 238 (592)
++.||. +.|+.|.+..+ ++.|.++++.+++++..+++ +|.++. .|.+...+++.++.+.|..+.+.+++|+
T Consensus 130 ~~~~~~---~i~vr~a~~~e-~~~~ld~~~~~l~~~~~vi~---d~~~~~alagv~g~~~s~~~~~t~d~~~E~a~f~Pi 202 (650)
T COG0072 130 IGKIDG---KIPVRYAKEGE-TLVFLDGKERELLTGDLVIA---DHEKGLALAGVMGGADSEVDPNTTDVLLEVASFPPI 202 (650)
T ss_pred hhhccC---ceEEEEccCCC-ceEecCCcceeeCCCCEEEE---eCCCceeeeeeeeccccCCCccceeeeeeeEecChH
Confidence 999999 45677766554 46676776667788888877 777777 9999999999999999999999999999
Q ss_pred ccCCcc-eeecCCeEEEE
Q 007714 239 INGAHS-AITLKTKNVFI 255 (592)
Q Consensus 239 igg~~s-~It~~T~nI~i 255 (592)
+++..| +++..|++.++
T Consensus 203 ~i~~~~r~l~~~T~~~~r 220 (650)
T COG0072 203 IISKTSRRLGLDTEASFR 220 (650)
T ss_pred HHHhhcccccCCcceeEE
Confidence 999999 99999999885
No 29
>TIGR00469 pheS_mito phenylalanyl-tRNA synthetase, mitochondrial. Unlike all other known phenylalanyl-tRNA synthetases, the mitochondrial form demonstrated from yeast is monomeric. It is similar to but longer than the alpha subunit (PheS) of the alpha 2 beta 2 form found in Bacteria, Archaea, and eukaryotes, and shares the characteristic motifs of class II aminoacyl-tRNA ligases. This alignment models the experimental example from Saccharomyces cerevisiae (designated MSF1) and its orthologs from other eukaryotic species.
Probab=99.20 E-value=6.5e-10 Score=119.20 Aligned_cols=196 Identities=14% Similarity=0.109 Sum_probs=143.2
Q ss_pred CCChHHHHHHHHHHHHHHC--------CceEEeec-cccChHHHHHHcCCCCCC-----CCce-eeCCCcCCcccccccc
Q 007714 391 KPLALNEFSDLMRLEIAMN--------GFTEVLTW-ILCSSKEISTMLNRQTDE-----STAV-VGNPRTSDFEVVRTTL 455 (592)
Q Consensus 391 ~~~~~~~~~~~lr~~l~~~--------Gf~Ev~t~-sl~s~~~~~~~~~~~~~~-----~~~v-i~NP~s~e~~~lR~SL 455 (592)
..+|...+.+.+.+.+.++ ||+=+-.+ ...+...+|+.++.+.+. .+.. + | +-..|||.-
T Consensus 40 ~~HPl~~~~~~I~~~F~~~~~~~~~~~gf~v~~~~~Pvvt~~~NFD~Ln~P~dHPaR~~~DT~Yi-~----~~~lLRTHT 114 (460)
T TIGR00469 40 EDHPLGIIRDLIEKKFNGADNNQRGNPLFKIFDNFKPVVTTMENFDNLGFPADHPGRQKSDCYYI-N----EQHLLRAHT 114 (460)
T ss_pred CCCcHHHHHHHHHHHHHhhhcccccCCCeEEeeCCCCccchhhhhhhcCCCCCCcccCcccceEe-c----CCceeCCCC
Confidence 6789999999999999998 77444331 367888899999876542 2345 6 3 457999999
Q ss_pred hHHHHHHHHhccCCCCCee--EEEeCcEeecCCCcccccccccEEEEEEeCC----------------------------
Q 007714 456 MPGILKTIGHNKDHPKPIK--IYEVGDVVLLDEKKDVGASCRRRLAALYCGA---------------------------- 505 (592)
Q Consensus 456 lpgLL~~~~~N~~~~~~~~--lFEiG~V~~~~~~~~~~~~~~~~l~~~~~g~---------------------------- 505 (592)
-+.-.++++.+.....|++ +.-.|+||++|.-+.++.....++-++...+
T Consensus 115 Sa~q~~~~~~~~~~~~~~~~~~i~~G~VYRrD~iDatH~p~FHQ~EG~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (460)
T TIGR00469 115 SAHELECFQGGLDDSDNIKSGFLISADVYRRDEIDKTHYPVFHQADGAAIRKRTKADLFEKEPGYIEKFEEDIRGTEADL 194 (460)
T ss_pred cHHHHHHHHhccccCCCcceeeEeecceeeCCCCccccCccceeeEEEEEeccccccccccccchhhhhhhhhhhccccc
Confidence 9999999998765434555 9999999999864333333333333221111
Q ss_pred ---C--CC-----------------H---------HHHHHHHHHHHHHh-CCCCCC--------CCCCccEEEEecCCCC
Q 007714 506 ---N--SG-----------------F---------ELIHCLVDRIMEVI-GTPFVP--------VGDDTGYYIQRSDEPE 545 (592)
Q Consensus 506 ---~--~~-----------------f---------~~ikg~le~ll~~l-gi~~~~--------~~~~~~~~~~~~~~~~ 545 (592)
. .+ | .++|+.|+.+++.+ |-+... ..+.....++++..|+
T Consensus 195 ~~~~~~i~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~LK~~L~~~~~~lFg~~~~~~~~~~~~~~~~~~~~r~~ps~fPf 274 (460)
T TIGR00469 195 NKENVKIILDDDSIPLKENNPKQEYASDLAVDLCEHELKHSIEGITKDLFGKKISSMIKNKANNTPKELKVRWIDAYFPF 274 (460)
T ss_pred cccCcceeccCcccccccccchhhhccHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccccccccCccceEEEEeccCCC
Confidence 0 11 4 78999999999865 532100 0111236788889999
Q ss_pred ccCCceEEEEECCE--EEEEEEEeCHHHHHhCCCCCCE---EEEEEecccc
Q 007714 546 FLPGRQASITHKGK--HVGTFGIVHPEVLNNFDISDPC---SFMEIDIENF 591 (592)
Q Consensus 546 f~pgr~A~I~~~g~--~iG~~GelhP~vl~~~~l~~pv---~~~El~l~~l 591 (592)
.+|+..++|.++|+ .||.+|.+||+|+++.|++.++ ++|+|.|+.|
T Consensus 275 tePs~evdi~~~g~WiEi~gcG~v~p~vl~~~g~~~~~~~g~AfGiGleRl 325 (460)
T TIGR00469 275 TAPSWEIEIWFKDEWLELCGCGIIRHDILLRAGVHPSETIGWAFGLGLDRI 325 (460)
T ss_pred CCcceEEEEEECCeeEEEeeeccCcHHHHHHcCCCccceEEEEEEecHHHH
Confidence 99999999999998 9999999999999999998764 8999999875
No 30
>COG3382 Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta [General function prediction only]
Probab=98.67 E-value=1.9e-07 Score=91.31 Aligned_cols=120 Identities=17% Similarity=0.140 Sum_probs=99.4
Q ss_pred CCHHHHHHHHHhc--CCCCCcEEEeee------------eeccccCCCeEEEecCCCceEEEeCCCcccCChhHHHhhhc
Q 007714 139 NSFIDLQDKLHQN--ICRRRTLVAIGT------------HDLDTLQGPFTYEALPPSHINFVPLKQTRDFTADELMEFYK 204 (592)
Q Consensus 139 ~s~~~lq~kL~~~--~~r~r~~VdIgn------------~Dld~i~~p~~y~~~~~~~i~f~~L~~~~~~~~~el~~l~~ 204 (592)
.|-..|.+|.++. +.|+|++||++| ||.|++.+|+..+...++ ..|.+|+...++.
T Consensus 82 ~S~EALlrRv~kg~~lp~InpvVD~yNa~Sl~y~vPig~~D~d~~~g~lrL~~a~gg-E~f~~lg~~~~~~--------- 151 (229)
T COG3382 82 PSAEALLRRVLKGNSLPRINPVVDIYNAASLKYAVPIGGYDADKIVGDLRLTLADGG-ETFDTLGAKNEPP--------- 151 (229)
T ss_pred CcHHHHHHHHHcCCCccccchhhhhhhHHHHhhcCCcccccHHHhCCCceEEeccCC-ceeecccCCCCCC---------
Confidence 3778999999864 668999999988 899999999888877765 4899997322211
Q ss_pred cccccccccccccCCCceeEEEeCCCCeeecCCcccCCcceeecCCeEEEEEecccC---hhhHHHHHHHHHHHHHHhcC
Q 007714 205 SDLKLKKYLHIIENSPLYPVLYDQNRTVLSLPPIINGAHSAITLKTKNVFIECTATD---LTKAKIVLNTMVTIFSEYCK 281 (592)
Q Consensus 205 ~~~~l~~y~~i~~~~~~~~vI~D~~~~vlslagIigg~~s~It~~T~nI~iE~a~~D---~~~~~~al~~~~~~l~~~~~ 281 (592)
+ ++.+|.+|++|.++..=|.-.|..|.||++|||+|+=+.+.+ .+.+..|++.++.++.++++
T Consensus 152 ----~----------~geiv~~Dd~G~~~r~~~~Rds~rT~vt~~Tk~~l~I~e~vp~~~~~~l~~a~~~l~~~l~~~~g 217 (229)
T COG3382 152 ----L----------EGEIVLVDDEGAFCRRWNWRDSVRTMVTESTKNVLLIAEGVPGVEVEDLVEALDSLADLLEKLLG 217 (229)
T ss_pred ----C----------CCcEEEEcCCCCeeeecccccceeeehhhccceEEEEEecCCCccHHHHHHHHHHHHHHHHHhcC
Confidence 1 234899999998888999999999999999999999999754 55778899999999999987
Q ss_pred C
Q 007714 282 R 282 (592)
Q Consensus 282 ~ 282 (592)
+
T Consensus 218 G 218 (229)
T COG3382 218 G 218 (229)
T ss_pred C
Confidence 5
No 31
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis]
Probab=98.61 E-value=8.8e-08 Score=98.46 Aligned_cols=191 Identities=16% Similarity=0.304 Sum_probs=143.7
Q ss_pred CCChHHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcC---------------CCCC---------------------
Q 007714 391 KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLN---------------RQTD--------------------- 434 (592)
Q Consensus 391 ~~~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~---------------~~~~--------------------- 434 (592)
+.+|.+....+||+.-..+||.|++|.-.+.+.+.+..++ .+..
T Consensus 45 k~Hpl~~TIq~lReAYLr~GF~EmvNPlivde~evykQFGpEA~AVLDRCFYLagLPrPdVGlg~eki~~i~~i~~d~~d 124 (536)
T COG2024 45 KPHPLYETIQRLREAYLRMGFSEMVNPLIVDEEEVYKQFGPEALAVLDRCFYLAGLPRPDVGLGAEKIEQIEEIGIDEPD 124 (536)
T ss_pred CcCcHHHHHHHHHHHHHHhhHHHhcCccccCHHHHHHHhChHHHHHHHHHHHhcCCCCCCcCccHHHHHHHHHhcCCCch
Confidence 7899999999999999999999999999998876333211 1100
Q ss_pred -------------------CCCce--eeCCCc-----------------------CCcccccccchHHHHHHHHhccCCC
Q 007714 435 -------------------ESTAV--VGNPRT-----------------------SDFEVVRTTLMPGILKTIGHNKDHP 470 (592)
Q Consensus 435 -------------------~~~~v--i~NP~s-----------------------~e~~~lR~SLlpgLL~~~~~N~~~~ 470 (592)
+++.+ |++.+. +-...||+++..|..-+++.=..+.
T Consensus 125 e~~e~lrevlh~YKKG~idGDdLv~eIa~aL~v~d~~~~~vle~vFPEfk~Lkp~s~tlTLRSHMTsGWFItLs~i~~r~ 204 (536)
T COG2024 125 EKVERLREVLHAYKKGEIDGDDLVHEIAEALEVDDGTGLRVLEEVFPEFKDLKPESSTLTLRSHMTSGWFITLSEILKRE 204 (536)
T ss_pred hhHHHHHHHHHHHhcCCCCcchhHHHHHHHhccCcchHHHHHHHhChHHhhcCCCCCceehhhhcccceeeeHHHHHhcc
Confidence 01111 222211 1145789999999999998876665
Q ss_pred -CCeeEEEeCcEeecCCCcc-cccccccEEEEEEeCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEecC--CCCc
Q 007714 471 -KPIKIYEVGDVVLLDEKKD-VGASCRRRLAALYCGANSGFELIHCLVDRIMEVIGTPFVPVGDDTGYYIQRSD--EPEF 546 (592)
Q Consensus 471 -~~~~lFEiG~V~~~~~~~~-~~~~~~~~l~~~~~g~~~~f~~ikg~le~ll~~lgi~~~~~~~~~~~~~~~~~--~~~f 546 (592)
.|+++|-|-++|.+.+.++ +..-....-+|++.+...+..+.|.+.+.||+.+|++. |.|++.+ .++|
T Consensus 205 ~~PlklFSIDRCFRREQ~ED~shLmtYhSASCVvvde~vtvD~GKaVAEglL~qfGFe~--------F~FrpDEK~SKYY 276 (536)
T COG2024 205 DPPLKLFSIDRCFRREQREDASHLMTYHSASCVVVDEDVTVDDGKAVAEGLLRQFGFEK--------FRFRPDEKKSKYY 276 (536)
T ss_pred CCCceeeehhHHhhhhhhcchhhhhhhccceEEEEcCcccccccHHHHHHHHHHhCccc--------eeecccccccccc
Confidence 5799999999998765432 33345567788889999999999999999999999985 7888754 5779
Q ss_pred cCCceEEEEE-----C--------C-EEEEEEEEeCHHHHHhCCCCCCEEEEEEecc
Q 007714 547 LPGRQASITH-----K--------G-KHVGTFGIVHPEVLNNFDISDPCSFMEIDIE 589 (592)
Q Consensus 547 ~pgr~A~I~~-----~--------g-~~iG~~GelhP~vl~~~~l~~pv~~~El~l~ 589 (592)
.||-+.+++. . | -.|..||.-.|.-|..|||++||.=+-+-++
T Consensus 277 vP~TQTEVyAyHPkL~gs~~kysdgWiEiATFGlYSP~ALaeY~Id~pVMNLGlGVE 333 (536)
T COG2024 277 VPGTQTEVYAYHPKLVGSIEKYSDGWIEIATFGLYSPIALAEYGIDYPVMNLGLGVE 333 (536)
T ss_pred CCCccceEEEecccccccccccCCCcEEEEeecccChHHHHHcCCCCceeecchhHH
Confidence 9998888874 1 2 2688899999999999999999975544433
No 32
>KOG2784 consensus Phenylalanyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis]
Probab=98.58 E-value=3.7e-07 Score=93.56 Aligned_cols=189 Identities=17% Similarity=0.205 Sum_probs=139.3
Q ss_pred CCCCCCChHHHHHHHHHHHHHHCCceEEeeccccChHH-HHHHcCCCC-----CCCCce-eeCCCcCC------------
Q 007714 387 PASVKPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKE-ISTMLNRQT-----DESTAV-VGNPRTSD------------ 447 (592)
Q Consensus 387 p~~~~~~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~-~~~~~~~~~-----~~~~~v-i~NP~s~e------------ 447 (592)
|.....+|..+.+...|+++..+||.|+-|..++-..- +|+.+..+. |..+.. |.+|.+..
T Consensus 206 p~~G~lHPLmKvR~eFRqiF~emGFsEMptn~yVEssFWNFDALfqPQqHpARDahDTFfl~~Pa~s~~~p~dY~~rVk~ 285 (483)
T KOG2784|consen 206 PSSGHLHPLMKVREEFRQIFFEMGFSEMPTNNYVESSFWNFDALFQPQQHPARDAHDTFFLKDPATSTKFPEDYLERVKA 285 (483)
T ss_pred CCCCccchHHHHHHHHHHHHHHccccccccccchhhccccchhhcCcccCCccccccceEecChhhcccCCHHHHHHHHH
Confidence 33338899999999999999999999999998886542 444443221 123457 99997765
Q ss_pred ----------------------cccccccch---HHHHHHHHhccCCC-CCeeEEEeCcEeecCCCcccccccccEEEEE
Q 007714 448 ----------------------FEVVRTTLM---PGILKTIGHNKDHP-KPIKIYEVGDVVLLDEKKDVGASCRRRLAAL 501 (592)
Q Consensus 448 ----------------------~~~lR~SLl---pgLL~~~~~N~~~~-~~~~lFEiG~V~~~~~~~~~~~~~~~~l~~~ 501 (592)
-.+|||.-. .-+|-.++ ..+ .|.|+|-|-+||+...=+.+..-+..++-++
T Consensus 286 vH~~G~ygs~GY~y~wk~eEaqKnvLRTHTTavSArmLy~LA---k~~f~p~K~FSIDrVFRNEtvDaTHLAEFHQVEGv 362 (483)
T KOG2784|consen 286 VHEQGGYGSIGYRYNWKLEEAQKNVLRTHTTAVSARMLYRLA---KKGFKPAKYFSIDRVFRNETVDATHLAEFHQVEGV 362 (483)
T ss_pred HHhcCCcCCcccCCCCCHHHHHHHHHhhhhHHhhHHHHHHHH---hCCCCcccccchhhhhhccccchHHHHHHhhhcee
Confidence 457787654 33444444 233 4799999999997654334566678889999
Q ss_pred EeCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEecCCCCccCCceEEEEE--CC----EEEEEEEEeCHHHHHhC
Q 007714 502 YCGANSGFELIHCLVDRIMEVIGTPFVPVGDDTGYYIQRSDEPEFLPGRQASITH--KG----KHVGTFGIVHPEVLNNF 575 (592)
Q Consensus 502 ~~g~~~~f~~ikg~le~ll~~lgi~~~~~~~~~~~~~~~~~~~~f~pgr~A~I~~--~g----~~iG~~GelhP~vl~~~ 575 (592)
+++...+.-++-|++..++.++|+.. ..++|...|+-+| +.+|+. .| -.||--|..||+.+...
T Consensus 363 iad~gltLgdLig~l~~ff~~lg~tn--------lrfKPaynpYtep--smeif~yh~gl~kwvEvgnSg~frPeml~pM 432 (483)
T KOG2784|consen 363 IADKGLTLGDLIGILMEFFTKLGATN--------LRFKPAYNPYTEP--SMEIFSYHHGLFKWVEVGNSGMFRPEMLLPM 432 (483)
T ss_pred eecCCCcHHHHHHHHHHHHhccCCcc--------ccccCCCCCCCCc--eeEEEEeccccceEEEEcCCCCCCHhHhhcc
Confidence 99999999999999999999999974 6777766666555 344443 22 26899999999999999
Q ss_pred CCCCCEEEEEEec
Q 007714 576 DISDPCSFMEIDI 588 (592)
Q Consensus 576 ~l~~pv~~~El~l 588 (592)
||+..+.++--.|
T Consensus 433 GLp~Dv~vl~~gl 445 (483)
T KOG2784|consen 433 GLPMDVVVLAWGL 445 (483)
T ss_pred CCCccceeeeecc
Confidence 9998877665443
No 33
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=98.44 E-value=6.6e-07 Score=72.70 Aligned_cols=70 Identities=21% Similarity=0.386 Sum_probs=61.9
Q ss_pred CCeEEechHHHHHHhCCCCCHHHHHHHhhhcCCcccccchhHHHHhhhccccccCCCCCCceEEEEecCCCcccccCHHH
Q 007714 1 MPTVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEVPANRYDLLCLEG 80 (592)
Q Consensus 1 Mp~i~~~~~~l~~~~g~~~~~~e~~~~l~~~g~e~e~~~~~~~~~~~~~~~~~~~~~~~~d~i~~ieit~NR~Dlls~~G 80 (592)
+|+|+++.+++.+++|.+++.+++.++|..+|++++...+ +..+++.+|++|+|+++-.=
T Consensus 1 ~~~i~~~~~~i~~llG~~i~~~ei~~~L~~lg~~~~~~~~--------------------~~~~~v~~P~~R~Di~~~~D 60 (71)
T smart00874 1 PRTITLRRERINRLLGLDLSAEEIEEILKRLGFEVEVSGD--------------------DDTLEVTVPSYRFDILIEAD 60 (71)
T ss_pred CcEEEecHHHHHHHHCCCCCHHHHHHHHHHCCCeEEecCC--------------------CCeEEEECCCCccccCcccH
Confidence 6899999999999999999999999999999999964211 12589999999999999999
Q ss_pred HHHHHHHhcC
Q 007714 81 IAQALRVFNK 90 (592)
Q Consensus 81 iARel~a~~g 90 (592)
++-|++-++|
T Consensus 61 liEei~r~~G 70 (71)
T smart00874 61 LIEEVARIYG 70 (71)
T ss_pred HHHHHHHHhC
Confidence 9999988776
No 34
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=97.79 E-value=8e-05 Score=60.41 Aligned_cols=67 Identities=16% Similarity=0.362 Sum_probs=56.0
Q ss_pred eEEechHHHHHHhCCCCCHHHHHHHhhhcCCcccccchhHHHHhhhccccccCCCCCCceEEEEecCCCcccccCHHHHH
Q 007714 3 TVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEVPANRYDLLCLEGIA 82 (592)
Q Consensus 3 ~i~~~~~~l~~~~g~~~~~~e~~~~l~~~g~e~e~~~~~~~~~~~~~~~~~~~~~~~~d~i~~ieit~NR~Dlls~~GiA 82 (592)
+|.++.+.+.+++|.+++.+++.+.|..+|+.++...++ .+.+.+|+.|+|+..-.=++
T Consensus 3 ~i~~~~~~i~~~lG~~i~~~~i~~~L~~lg~~~~~~~~~---------------------~~~v~vP~~R~Di~~~~Dli 61 (70)
T PF03484_consen 3 KITLSLDKINKLLGIDISPEEIIKILKRLGFKVEKIDGD---------------------TLEVTVPSYRFDIEHEEDLI 61 (70)
T ss_dssp EEEEEHHHHHHHHTS---HHHHHHHHHHTT-EEEE-CTT---------------------EEEEEEETTSTT-SSHHHHH
T ss_pred EEEecHHHHHHHhCCCCCHHHHHHHHHHCCCEEEECCCC---------------------EEEEEcCCCcCCcCcccHHH
Confidence 689999999999999999999999999999999865432 79999999999999999999
Q ss_pred HHHHHhcC
Q 007714 83 QALRVFNK 90 (592)
Q Consensus 83 Rel~a~~g 90 (592)
-|++-++|
T Consensus 62 EEiaR~yG 69 (70)
T PF03484_consen 62 EEIARIYG 69 (70)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhC
Confidence 99998876
No 35
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes. seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B ....
Probab=97.70 E-value=0.00015 Score=69.32 Aligned_cols=130 Identities=22% Similarity=0.256 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHH-HCCceEEeeccccChHHHHHHcCCCCCCCCce-eeCCCcCCcccccccchHHHHHHHHhccCC---C
Q 007714 396 NEFSDLMRLEIA-MNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDH---P 470 (592)
Q Consensus 396 ~~~~~~lr~~l~-~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v-i~NP~s~e~~~lR~SLlpgLL~~~~~N~~~---~ 470 (592)
+++.+.+++.+. ..||+|+.+..|.+.+............+..+ +.+.-.++ -+||++.-|++....+..... .
T Consensus 3 ~~l~~~~~~~~~~~~G~~ev~~P~l~~~~~~~~sg~~~~~~~~~~~~~~~~~~~-~~L~pt~~~~~~~~~~~~~~~~~~~ 81 (173)
T PF00587_consen 3 NALERFIREEFVLKFGFQEVDTPILIPSEVWEKSGHWDNFSDEMFKVKDRGDEE-YCLRPTSEPGIYSLFKNEIRSSYRD 81 (173)
T ss_dssp HHHHHHHHHHHHHHTTEEEEB--SEEEHHHHHHHSHHHHHGGGSEEEEETTTEE-EEE-SSSHHHHHHHHHHHEEBHGGG
T ss_pred HHHHHHHHHHhHHhcCCEEEECCeEEehHHhhhccccccccCCeeeeeeccccc-EEeccccccceeeeecceeeecccc
Confidence 568899999999 99999999999999876333211100013355 76655433 499999999999999987654 4
Q ss_pred CCeeEEEeCcEeecCCCcccc---cccccEEEEEEeCCC----CCHHHHHHHHHHHHHHhCC-C
Q 007714 471 KPIKIYEVGDVVLLDEKKDVG---ASCRRRLAALYCGAN----SGFELIHCLVDRIMEVIGT-P 526 (592)
Q Consensus 471 ~~~~lFEiG~V~~~~~~~~~~---~~~~~~l~~~~~g~~----~~f~~ikg~le~ll~~lgi-~ 526 (592)
.|+++|++|.+|........| .++..+.-+.+.+.. ..+..+......+++.||+ +
T Consensus 82 LP~~~~~~g~~fR~E~~~~~gl~R~reF~~~e~~~f~~~~~~~~~~~~~~~~~~~i~~~lgl~~ 145 (173)
T PF00587_consen 82 LPLKLYQIGTCFRNEARPTRGLFRLREFTMDEMHIFCTPEQSEEEFEELLELYKEILEKLGLEP 145 (173)
T ss_dssp SSEEEEEEEEEEBSSSSSBSTTTS-SEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHTTSGC
T ss_pred CCeEEeecccccccccccccccceeeEeeeeceEEEeCCcccHHHHHHHHHHHHHHHHHcCCce
Confidence 799999999999866322222 255566666555544 3478899999999999999 5
No 36
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=97.59 E-value=0.00056 Score=74.54 Aligned_cols=132 Identities=15% Similarity=0.197 Sum_probs=91.8
Q ss_pred CChHHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCC--CCCCce-eeCCCcCCcccccccchHHHHHHHHhccC
Q 007714 392 PLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQT--DESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKD 468 (592)
Q Consensus 392 ~~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~--~~~~~v-i~NP~s~e~~~lR~SLlpgLL~~~~~N~~ 468 (592)
....+.+.+.+++.+...||+|+.|..|...+......+... ..+..+ +.++ +.+.=+||+-+.|++.+.++.|.+
T Consensus 18 ~~~~~~i~~~i~~~~~~~Gy~ei~tP~le~~~~~~~~~g~~~~~~~~~~~~~~d~-~g~~l~LRpd~T~~~ar~~~~~~~ 96 (412)
T PRK00037 18 SAKWQYVEDTIREVFERYGFSEIRTPIFEYTELFKRKVGEETDIVEKEMYTFQDK-GGRSLTLRPEGTAPVVRAVIEHKL 96 (412)
T ss_pred HHHHHHHHHHHHHHHHHcCCeEeeccccchHHHhccccCcccccccceeEEEEcC-CCCEEEecCCCcHHHHHHHHhCCC
Confidence 345567889999999999999999999977653211111110 013455 7776 566779999999999999998754
Q ss_pred CCCCeeEEEeCcEeecCCCcccccccccEEEEEEeCCCCCH--HHHHHHHHHHHHHhCCC
Q 007714 469 HPKPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGF--ELIHCLVDRIMEVIGTP 526 (592)
Q Consensus 469 ~~~~~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~g~~~~f--~~ikg~le~ll~~lgi~ 526 (592)
.|+|+|++|+||+.+.......++..++.+=+.|..... .++-.++..+|+.+|++
T Consensus 97 --~p~r~~~~g~vfR~e~~~~gr~ref~Q~g~ei~g~~~~~~d~E~i~~~~~~l~~lg~~ 154 (412)
T PRK00037 97 --QPFKLYYIGPMFRYERPQKGRYRQFHQFGVEVIGSDSPLADAEVIALAADILKALGLK 154 (412)
T ss_pred --CCeEEEEEcCccccCCCCCCcccceEEcCeeeeCCCCcchhHHHHHHHHHHHHHcCCC
Confidence 789999999999865433334456666666555554322 34556667778888875
No 37
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain.
Probab=97.59 E-value=0.0014 Score=66.94 Aligned_cols=130 Identities=15% Similarity=0.180 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCce-eeCCCcCCcccccccchHHHHHHHHhccCC-CCC
Q 007714 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDH-PKP 472 (592)
Q Consensus 395 ~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v-i~NP~s~e~~~lR~SLlpgLL~~~~~N~~~-~~~ 472 (592)
.+.+.+.+++.+...||.|+.|..|...+.. .........++.+ +..+ +.+.-+||+.+.|++.+.++.|... ..|
T Consensus 5 ~~~l~~~l~~~f~~~Gy~~v~tP~le~~~~~-~~~~~~~~~~~~~~~~d~-~g~~l~LRpd~T~~iaR~~a~~~~~~~~p 82 (261)
T cd00773 5 RRYIEDTLREVFERYGYEEIDTPVFEYTELF-LRKSGDEVSKEMYRFKDK-GGRDLALRPDLTAPVARAVAENLLSLPLP 82 (261)
T ss_pred HHHHHHHHHHHHHHcCCEEeeccceeeHHHh-cccccccccceEEEEECC-CCCEEEeCCCCcHHHHHHHHhcCccCCCC
Confidence 4568899999999999999999999987642 2111111123456 7766 3456799999999999999987653 578
Q ss_pred eeEEEeCcEeecCCCcccccccccEEEEEEeCCCCCHH--HHHHHHHHHHHHhCCC
Q 007714 473 IKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFE--LIHCLVDRIMEVIGTP 526 (592)
Q Consensus 473 ~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~g~~~~f~--~ikg~le~ll~~lgi~ 526 (592)
+|+|.+|+||+.........++..++++=+.|...-.. ++-.++..+++.+|++
T Consensus 83 ~k~~y~g~vfR~e~~~~g~~re~~Q~g~Eiig~~~~~~daE~i~l~~~~l~~lg~~ 138 (261)
T cd00773 83 LKLYYIGPVFRYERPQKGRYREFYQVGVEIIGSDSPLADAEVIALAVEILEALGLK 138 (261)
T ss_pred eEEEEEcCEEecCCCCCCCccceEEeceeeeCCCChHHHHHHHHHHHHHHHHcCCC
Confidence 99999999998655433345666677765556543333 3557777788888875
No 38
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=97.41 E-value=0.002 Score=69.85 Aligned_cols=134 Identities=17% Similarity=0.222 Sum_probs=94.1
Q ss_pred CChHHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCC--CCCCce-eeCCCcCCcccccccchHHHHHHHHhccC
Q 007714 392 PLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQT--DESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKD 468 (592)
Q Consensus 392 ~~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~--~~~~~v-i~NP~s~e~~~lR~SLlpgLL~~~~~N~~ 468 (592)
....+++.+.+++.+...||+|+.|.+|...+......+... ..+..+ +..+ +.+.-+||+-+.|++.+.++.|.+
T Consensus 14 ~~~~~~i~~~i~~~f~~~Gy~~i~~P~le~~~~~~~~~g~~~~~~~~~~~~~~d~-~g~~l~LRpD~T~~iaR~~~~~~~ 92 (397)
T TIGR00442 14 MIKWQYIEETIREVFELYGFKEIRTPIFEYTELFARKVGEETDIVEKEMYTFKDK-GGRSLTLRPEGTAPVARAVIENKL 92 (397)
T ss_pred HHHHHHHHHHHHHHHHHcCCeEecCcccchHHHhhhccCccccccccceEEEECC-CCCEEeecCCCcHHHHHHHHhccc
Confidence 345667889999999999999999999987654222111110 012345 6665 456678999999999999987754
Q ss_pred -CCCCeeEEEeCcEeecCCCcccccccccEEEEEEeCCCCCHH--HHHHHHHHHHHHhCCC
Q 007714 469 -HPKPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFE--LIHCLVDRIMEVIGTP 526 (592)
Q Consensus 469 -~~~~~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~g~~~~f~--~ikg~le~ll~~lgi~ 526 (592)
+..|+|+|.+|+||+.+.......++..++.+=+.|...... ++-.++..+|+.+|++
T Consensus 93 ~~~~p~r~~y~g~vfR~e~~~~gr~ref~Q~g~eiig~~~~~~d~E~i~l~~e~l~~lg~~ 153 (397)
T TIGR00442 93 LLPKPFKLYYIGPMFRYERPQKGRYRQFHQFGVEVIGSDSPLADAEIIALAAEILKELGIK 153 (397)
T ss_pred ccCCCeEEEEEcCeecCCCCCCCcccceEEcCeeeeCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 356899999999998654333345666677776666544333 4557778888999986
No 39
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=97.38 E-value=0.0032 Score=68.26 Aligned_cols=131 Identities=13% Similarity=0.112 Sum_probs=92.5
Q ss_pred hHHHHHHHHHHHHHHCCceEEeeccccChHHHHHH-cCCCCCCCCce-eeCCCcCCcccccccchHHHHHHHHhccCCCC
Q 007714 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTM-LNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPK 471 (592)
Q Consensus 394 ~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~-~~~~~~~~~~v-i~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~ 471 (592)
..+.+.+++++.+...||.|+.|.+|-..+. +.. .+... ....+ +.++.+.+.-.||+=+.+++.+.++.|.+...
T Consensus 23 ~~~~i~~~l~~~f~~~Gy~~I~tP~~E~~e~-~~~~~g~~~-~~~~y~f~D~~~g~~l~LRpD~T~~iaR~~a~~~~~~~ 100 (392)
T PRK12421 23 KIERLRRRLLDLFASRGYQLVMPPLIEYLES-LLTGAGQDL-KLQTFKLIDQLSGRLMGVRADITPQVARIDAHLLNREG 100 (392)
T ss_pred HHHHHHHHHHHHHHHcCCEEeeCcchhhHHH-HhccCCccc-hhceEEEEcCCCCcEEEECCcCCHHHHHHHHhhcCCCC
Confidence 3456789999999999999999999965443 221 11111 12456 88886666778999999999999888765566
Q ss_pred CeeEEEeCcEeecCCCcccccccccEEEEEEeCCCCCHH--HHHHHHHHHHHHhCCC
Q 007714 472 PIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFE--LIHCLVDRIMEVIGTP 526 (592)
Q Consensus 472 ~~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~g~~~~f~--~ikg~le~ll~~lgi~ 526 (592)
|+|+|-+|+||..........++..++++=+-|...-.. ++-.++..+|+.+|++
T Consensus 101 p~R~~Y~g~VfR~~~~~~gr~rEf~Q~GvEiiG~~~~~aDaEvi~l~~e~l~~lgi~ 157 (392)
T PRK12421 101 VARLCYAGSVLHTLPQGLFGSRTPLQLGAELYGHAGIEADLEIIRLMLGLLRNAGVP 157 (392)
T ss_pred ceEEEEeeeEEEcCCCcCCCcCccceeceEEeCCCCchhHHHHHHHHHHHHHHcCCC
Confidence 899999999997543322234667777776767543322 4446666788888886
No 40
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A ....
Probab=97.24 E-value=0.0056 Score=64.03 Aligned_cols=129 Identities=16% Similarity=0.169 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCce-eeCCCcCCcccccccchHHHHHHHHhccCCCCCe
Q 007714 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPI 473 (592)
Q Consensus 395 ~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v-i~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~~ 473 (592)
.+.+.+++++.+...||.|+.|.+|...+......+. +.++.+ +.++ +.+.-.||+-+.+++.+.++.|.+...|.
T Consensus 13 ~~~i~~~l~~~f~~~Gy~~i~~P~le~~~~~~~~~~~--~~~~~~~~~D~-~G~~l~LR~D~T~~iaR~~a~~~~~~~~~ 89 (311)
T PF13393_consen 13 RERIESKLREVFERHGYEEIETPLLEYYELFLDKSGE--DSDNMYRFLDR-SGRVLALRPDLTVPIARYVARNLNLPRPK 89 (311)
T ss_dssp HHHHHHHHHHHHHHTT-EE-B--SEEEHHHHHCHSST--TGGCSEEEECT-TSSEEEE-SSSHHHHHHHHHHCCGSSSSE
T ss_pred HHHHHHHHHHHHHHcCCEEEECCeEeecHHhhhcccc--chhhhEEEEec-CCcEeccCCCCcHHHHHHHHHhcCcCCCc
Confidence 4567899999999999999999999877653332221 224677 8887 88889999999999999999997656789
Q ss_pred eEEEeCcEeecCCCcccccccccEEEEEEeCCCCCH--HHHHHHHHHHHH-HhCCC
Q 007714 474 KIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGF--ELIHCLVDRIME-VIGTP 526 (592)
Q Consensus 474 ~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~g~~~~f--~~ikg~le~ll~-~lgi~ 526 (592)
|+|.+|+||..........++..++++=+-|...-. .++-.++..+|. .++++
T Consensus 90 r~~y~g~vfR~~~~~~g~~re~~Q~g~Eiig~~~~~~daEvi~l~~e~l~~~l~~~ 145 (311)
T PF13393_consen 90 RYYYIGPVFRYERPGKGRPREFYQCGFEIIGSSSLEADAEVIKLADEILDRELGLE 145 (311)
T ss_dssp EEEEEEEEEEEETTTTTBESEEEEEEEEEESSSSHHHHHHHHHHHHHHHHHHHTTT
T ss_pred eEEEEcceeeccccCCCCCceeEEEEEEEECCCCHHHHHHHHHHHHHHHHhhcCCC
Confidence 999999999865433334567777877666654222 144456666775 88875
No 41
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain. This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=97.17 E-value=0.0043 Score=61.92 Aligned_cols=131 Identities=12% Similarity=0.104 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcC-CCCCCCCce-eeCCC---cCCcccccccchHHHHHHHHhccCC
Q 007714 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLN-RQTDESTAV-VGNPR---TSDFEVVRTTLMPGILKTIGHNKDH 469 (592)
Q Consensus 395 ~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~-~~~~~~~~v-i~NP~---s~e~~~lR~SLlpgLL~~~~~N~~~ 469 (592)
.+.+.+.+++.+...||+|+.+..|...+. +...+ .....+... +.++- ..+.-+||+...+++....+.+...
T Consensus 5 ~~~l~~~~~~~~~~~G~~ei~~P~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LrP~~~~~i~~~~~~~~~~ 83 (235)
T cd00670 5 WRALERFLDDRMAEYGYQEILFPFLAPTVL-FFKGGHLDGYRKEMYTFEDKGRELRDTDLVLRPAACEPIYQIFSGEILS 83 (235)
T ss_pred HHHHHHHHHHHHHHcCCEEEECCeEcCHHH-HhhcCCcccchhhcCeeccCcccccCCeEEEecCCCHHHHHHHhccCcc
Confidence 456788899999999999999999998875 33222 111112334 65543 1345689999999999999887653
Q ss_pred --CCCeeEEEeCcEeecCCCcc---cccccccEEEEEEeCCC----CCHHHHHHHHHHHHHHhCCC
Q 007714 470 --PKPIKIYEVGDVVLLDEKKD---VGASCRRRLAALYCGAN----SGFELIHCLVDRIMEVIGTP 526 (592)
Q Consensus 470 --~~~~~lFEiG~V~~~~~~~~---~~~~~~~~l~~~~~g~~----~~f~~ikg~le~ll~~lgi~ 526 (592)
..|++++++|+||..+.... ...++..+..+-+.|.. ..+.++..+...+++.||++
T Consensus 84 ~~~lP~r~~~~g~~fR~E~~~~~gl~R~reF~q~e~~~~~~~~~~~~~~~e~~~~~~~~l~~lgl~ 149 (235)
T cd00670 84 YRALPLRLDQIGPCFRHEPSGRRGLMRVREFRQVEYVVFGEPEEAEEERREWLELAEEIARELGLP 149 (235)
T ss_pred chhcCeeeeeecccccCCCCCCCCChhheeeeeceEEEEcCHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 56999999999998654431 12245556665555543 23667888999999999986
No 42
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=97.05 E-value=0.011 Score=65.00 Aligned_cols=132 Identities=14% Similarity=0.131 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCC--CCCce-eeCCCcCCcccccccchHHHHHHHHhccC--C
Q 007714 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTD--ESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKD--H 469 (592)
Q Consensus 395 ~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~--~~~~v-i~NP~s~e~~~lR~SLlpgLL~~~~~N~~--~ 469 (592)
.+.+.+.+++.+...||+|+.|.+|-..+......+...+ .++.. +..+ +.+.-+||+-+.|++.+.++.|.. +
T Consensus 21 ~~~i~~~i~~~~~~~Gy~~I~TP~~E~~e~~~~~~G~~~~~~~~~my~~~d~-~g~~l~LRpd~T~~iaR~~~~~~~~~~ 99 (430)
T CHL00201 21 WQFIHDKALTLLSLANYSEIRTPIFENSSLYDRGIGETTDIVNKEMYRFTDR-SNRDITLRPEGTAGIVRAFIENKMDYH 99 (430)
T ss_pred HHHHHHHHHHHHHHcCCeeecCcccchHHHHhcccCCcccccccceEEEEcC-CCCEEEeCCCCcHHHHHHHHHcccccc
Confidence 4567888999999999999999999887642221121111 13445 6554 455568999999999999766654 2
Q ss_pred CCCeeEEEeCcEeecCCCcccccccccEEEEEEeCCCCCH--HHHHHHHHHHHHHhCCCC
Q 007714 470 PKPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGF--ELIHCLVDRIMEVIGTPF 527 (592)
Q Consensus 470 ~~~~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~g~~~~f--~~ikg~le~ll~~lgi~~ 527 (592)
..|+|+|++|.||+.+.......++..++++=+-|...-. .++-.++...|+.+|++.
T Consensus 100 ~~p~R~~y~g~vfR~e~~q~GR~Ref~Q~g~EiiG~~~~~aD~Evi~l~~~~l~~lGl~~ 159 (430)
T CHL00201 100 SNLQRLWYSGPMFRYERPQSGRQRQFHQLGIEFIGSIDARADTEVIHLAMQIFNELQVKN 159 (430)
T ss_pred CCCeEEEEEcceecCCCCcCCccceeEEeceEEECCCChhhHHHHHHHHHHHHHHcCCCc
Confidence 4579999999999865433233456666666455543222 356677788889999863
No 43
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=96.95 E-value=0.012 Score=63.73 Aligned_cols=131 Identities=13% Similarity=0.084 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCce-eeCCCcCCcccccccchHHHHHHHHhccCC-CCC
Q 007714 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDH-PKP 472 (592)
Q Consensus 395 ~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v-i~NP~s~e~~~lR~SLlpgLL~~~~~N~~~-~~~ 472 (592)
.+.+.+++++.+...||.|+.|.+|-..+......+.. ..+..+ +..+.+...-+||+=+.+++.+.++.|.+. ..|
T Consensus 20 ~~~i~~~l~~~f~~~Gy~~i~tP~lE~~e~~~~~~g~~-~~~~~~~f~d~~~g~~l~LRpD~T~~iaR~~a~~~~~~~~p 98 (391)
T PRK12292 20 IEEIRRRLLDLFRRWGYEEVITPTLEYLDTLLAGGGAI-LDLRTFKLVDQLSGRTLGLRPDMTAQIARIAATRLANRPGP 98 (391)
T ss_pred HHHHHHHHHHHHHHcCCceeeCcchhhHHHHhccCCcc-chhhhEEEeecCCCCEEEECCCCcHHHHHHHHHhccCCCCC
Confidence 44678889999999999999999998655321111111 113455 766645667799999999999999987653 568
Q ss_pred eeEEEeCcEeecCCCcccccccccEEEEEEeCCCCCHH--HHHHHHHHHHHHhCCC
Q 007714 473 IKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFE--LIHCLVDRIMEVIGTP 526 (592)
Q Consensus 473 ~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~g~~~~f~--~ikg~le~ll~~lgi~ 526 (592)
+|+|.+|+||..+.......++..++++=+-|...... |+-.++..+|..+|++
T Consensus 99 ~r~~y~g~vfR~~~~~~gr~ref~Q~g~EiiG~~~~~aDaEvi~l~~~~l~~lgl~ 154 (391)
T PRK12292 99 LRLCYAGNVFRAQERGLGRSREFLQSGVELIGDAGLEADAEVILLLLEALKALGLP 154 (391)
T ss_pred eEEEeeceeeecCCCcCCCccchhccceEEeCCCCchHHHHHHHHHHHHHHHcCCC
Confidence 99999999998654332345667777765666543322 4556777778888875
No 44
>PLN02530 histidine-tRNA ligase
Probab=96.90 E-value=0.0093 Score=66.54 Aligned_cols=130 Identities=13% Similarity=0.102 Sum_probs=89.1
Q ss_pred hHHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCce-eeCCCcCCcccccccchHHHHHHHHhccCC-CC
Q 007714 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDH-PK 471 (592)
Q Consensus 394 ~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v-i~NP~s~e~~~lR~SLlpgLL~~~~~N~~~-~~ 471 (592)
..+.+.+.+++.+...||+|+.|..|-..+......+. ...++.+ +..+ +.+.=+||+-+.|++.+.++.|.+. ..
T Consensus 86 ~~~~i~~~~~~~~~~~Gy~~I~tP~lE~~el~~~~~g~-~~~~~~y~f~D~-~g~~l~LRpD~T~~iaR~~~~~~~~~~~ 163 (487)
T PLN02530 86 LRNWLFDHFREVSRLFGFEEVDAPVLESEELYIRKAGE-EITDQLYNFEDK-GGRRVALRPELTPSLARLVLQKGKSLSL 163 (487)
T ss_pred HHHHHHHHHHHHHHHcCCEeccccccchHHHhccccCc-ccccceEEEECC-CCCEEecCCCCcHHHHHHHHhcccccCC
Confidence 34567889999999999999999999875532111111 1123455 6655 4455689999999999999988653 57
Q ss_pred CeeEEEeCcEeecCCCcccccccccEEEEEEeCCC---CCHHHHHHHHHHHHHHhCCC
Q 007714 472 PIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGAN---SGFELIHCLVDRIMEVIGTP 526 (592)
Q Consensus 472 ~~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~g~~---~~f~~ikg~le~ll~~lgi~ 526 (592)
|+|+|.+|+||+.+.......++..++++=+-|.. ++. |+-.++..+|+.+|++
T Consensus 164 P~r~~y~g~vfR~e~~q~gr~REf~Q~giEiiG~~~~~aDa-Evi~l~~~~l~~lgl~ 220 (487)
T PLN02530 164 PLKWFAIGQCWRYERMTRGRRREHYQWNMDIIGVPGVEAEA-ELLAAIVTFFKRVGIT 220 (487)
T ss_pred CeEEEEEcCEEcCcCCCCCCccceEEcCeeEeCCCCcchhH-HHHHHHHHHHHHcCCC
Confidence 89999999999765432223466666665444432 344 4445666688888885
No 45
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=96.83 E-value=0.018 Score=60.49 Aligned_cols=128 Identities=13% Similarity=0.131 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCce-eeCCCcCCcccccccchHHHHHHHHhccC-CCCC
Q 007714 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKD-HPKP 472 (592)
Q Consensus 395 ~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v-i~NP~s~e~~~lR~SLlpgLL~~~~~N~~-~~~~ 472 (592)
.+.+.+.+++.+...||.|+.|.+|...+......+ ...++.+ +..+- .+.-+||+-+.|++.+.++.+.+ ...|
T Consensus 11 ~~~i~~~l~~~~~~~Gy~~i~tP~le~~~~~~~~~~--~~~~~~~~~~d~~-g~~l~LRpD~T~~iaR~~~~~~~~~~~p 87 (314)
T TIGR00443 11 KEEIERQLQDVFRSWGYQEIITPTLEYLDTLSAGGG--ILNEDLFKLFDSL-GRVLGLRPDMTTPIARAVSTRLRDRPLP 87 (314)
T ss_pred HHHHHHHHHHHHHHcCCeeccCcchhhHHHhcccCC--cchhceEEEECCC-CCEEeecCcCcHHHHHHHHHhcccCCCC
Confidence 456788999999999999999999987664322211 1123455 66653 45678999999999999887765 3468
Q ss_pred eeEEEeCcEeecCCCcccccccccEEEEEEeCCC---CCHHHHHHHHHHHHHHhCCC
Q 007714 473 IKIYEVGDVVLLDEKKDVGASCRRRLAALYCGAN---SGFELIHCLVDRIMEVIGTP 526 (592)
Q Consensus 473 ~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~g~~---~~f~~ikg~le~ll~~lgi~ 526 (592)
+|+|.+|+||..........++..++++=+-|.. ++. ++-.++..++..+|++
T Consensus 88 ~r~~y~g~VfR~~~~~~gr~re~~Q~g~Eiig~~~~~ada-Evi~l~~~~l~~lg~~ 143 (314)
T TIGR00443 88 LRLCYAGNVFRTNESGAGRSREFTQAGVELIGAGGPAADA-EVIALLIEALKALGLK 143 (314)
T ss_pred eEEEEeceEeecCCCcCCCcccccccceEEeCCCCchhHH-HHHHHHHHHHHHcCCC
Confidence 9999999999865543334566666666454543 332 4556666677778875
No 46
>PRK12420 histidyl-tRNA synthetase; Provisional
Probab=96.74 E-value=0.018 Score=63.05 Aligned_cols=131 Identities=13% Similarity=0.043 Sum_probs=88.9
Q ss_pred hHHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCC-CCCce-eeCCCcCCcccccccchHHHHHHHHhccCCCC
Q 007714 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTD-ESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPK 471 (592)
Q Consensus 394 ~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~-~~~~v-i~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~ 471 (592)
..+.+.+++++.+...||.|+.|..|-..+......+...+ .+..+ +..+ +...=+||+-+.+++.+.++.|.+.+.
T Consensus 20 ~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~~~~~~~~~~~~~~~~~~~~~~D~-~g~~l~LRpD~T~~iaR~va~~~~~~~ 98 (423)
T PRK12420 20 LRNKIKRALEDVFERYGCKPLETPTLNMYELMSSKYGGGDEILKEIYTLTDQ-GKRDLALRYDLTIPFAKVVAMNPNIRL 98 (423)
T ss_pred HHHHHHHHHHHHHHHcCCEeccccccchHHHHhcccCCCcccccceEEEecC-CCceecccccccHHHHHHHHhCcCCCC
Confidence 34567889999999999999999999876532111111111 13355 7776 445568999999999999999865566
Q ss_pred CeeEEEeCcEeecCCCcccccccccEEEEEEeCC---CCCHHHHHHHHHHHHHHhCCC
Q 007714 472 PIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGA---NSGFELIHCLVDRIMEVIGTP 526 (592)
Q Consensus 472 ~~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~g~---~~~f~~ikg~le~ll~~lgi~ 526 (592)
|+|+|.+|+||+.+.......++..++++=+-|. .++ .++-.++-..|+.+|++
T Consensus 99 p~r~~y~g~vfR~~~~~~gr~rE~~Q~g~EiiG~~~~~ad-aEvi~la~~~l~~lg~~ 155 (423)
T PRK12420 99 PFKRYEIGKVFRDGPIKQGRFREFIQCDVDIVGVESVMAE-AELMSMAFELFRRLNLE 155 (423)
T ss_pred CeeEEEEcceECCCCCCCCccceeEECCeeeECCCCCccc-HHHHHHHHHHHHHCCCC
Confidence 8999999999986543223345666666544443 233 34555666777888874
No 47
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=96.61 E-value=0.021 Score=59.02 Aligned_cols=119 Identities=13% Similarity=0.169 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCce-eeCCCcCCcccccccchHHHHHHHHhccC-CCCC
Q 007714 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKD-HPKP 472 (592)
Q Consensus 395 ~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v-i~NP~s~e~~~lR~SLlpgLL~~~~~N~~-~~~~ 472 (592)
.+.+++.+++.+...||+|+.|.+|-..+. +... ..+..+ +..+ +.+.-+||+=+.+++.+.++.|.+ ...|
T Consensus 22 ~~~i~~~l~~vf~~~Gy~~I~tP~lE~~e~----~~~~-~~~~~y~~~D~-~g~~l~LRpD~T~~iaR~~a~~~~~~~~p 95 (281)
T PRK12293 22 KREIENVASEILYENGFEEIVTPFFSYHQH----QSIA-DEKELIRFSDE-KNHQISLRADSTLDVVRIVTKRLGRSTEH 95 (281)
T ss_pred HHHHHHHHHHHHHHcCCeEeeccceeehhh----hccc-chhceEEEECC-CCCEEEECCcCCHHHHHHHHHhcccCCCc
Confidence 456778899999999999999999964432 2111 123455 7666 666779999999999999988764 4568
Q ss_pred eeEEEeCcEeecCCCcccccccccEEEEEEeCCCCCHHHHHHHHHHHHHHhCCC
Q 007714 473 IKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVIGTP 526 (592)
Q Consensus 473 ~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~g~~~~f~~ikg~le~ll~~lgi~ 526 (592)
.|+|-+|+||+.. .++..++++=+-|... ..++-.++...|+.+|++
T Consensus 96 ~r~~Y~g~vfR~~------~rEf~Q~GvEliG~~~-~~Evi~la~~~l~~lgl~ 142 (281)
T PRK12293 96 KKWFYIQPVFRYP------SNEIYQIGAELIGEED-LSEILNIAAEIFEELELE 142 (281)
T ss_pred eeEEEeccEEecC------CCcccccCeEeeCCCC-HHHHHHHHHHHHHHcCCC
Confidence 9999999999743 2566676665666543 468888888888899886
No 48
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes.
Probab=96.49 E-value=0.046 Score=55.74 Aligned_cols=131 Identities=15% Similarity=0.180 Sum_probs=82.3
Q ss_pred hHHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCC-CCCce-eeCCCcCCcccccccchHHHHHHHHhccC--C
Q 007714 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTD-ESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKD--H 469 (592)
Q Consensus 394 ~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~-~~~~v-i~NP~s~e~~~lR~SLlpgLL~~~~~N~~--~ 469 (592)
-.+.+.+.+++.+...||+|+.+..|.+.+..... +..+. .++.. +.+.-.+ .=+||++--+.+-..++.... +
T Consensus 33 l~~~i~~~~~~~~~~~G~~ei~~P~l~~~~~~~~s-g~~~~~~~emy~~~d~~~~-~l~LrPt~e~~~t~~~~~~i~s~~ 110 (255)
T cd00779 33 VLKKIENIIREEMNKIGAQEILMPILQPAELWKES-GRWDAYGPELLRLKDRHGK-EFLLGPTHEEVITDLVANEIKSYK 110 (255)
T ss_pred HHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhc-CCccccCcccEEEecCCCC-eEEEecCCcHHHHHHHHhccccHh
Confidence 35567888999999999999999999987753222 21111 12344 6543323 347999865555555554332 3
Q ss_pred CCCeeEEEeCcEeecCCCcccc---cccccEEEEEEeCCC-----CCHHHHHHHHHHHHHHhCCC
Q 007714 470 PKPIKIYEVGDVVLLDEKKDVG---ASCRRRLAALYCGAN-----SGFELIHCLVDRIMEVIGTP 526 (592)
Q Consensus 470 ~~~~~lFEiG~V~~~~~~~~~~---~~~~~~l~~~~~g~~-----~~f~~ikg~le~ll~~lgi~ 526 (592)
..|+++|++|.||+.+.....| .++.....+-..+.+ ..+.++..+...+++.||++
T Consensus 111 ~LPlr~~~~~~~FR~E~~~~~Gl~R~reF~q~e~~~~~~~~~~a~~~~~~i~~~~~~il~~Lgl~ 175 (255)
T cd00779 111 QLPLNLYQIQTKFRDEIRPRFGLMRGREFLMKDAYSFDIDEESLEETYEKMYQAYSRIFKRLGLP 175 (255)
T ss_pred hCCHHHHhCcceecCCCCCCCceeeeeeEeHhhheeccCCHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 5799999999999865322222 233333333223332 23457778889999999997
No 49
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=96.44 E-value=0.073 Score=57.33 Aligned_cols=127 Identities=11% Similarity=0.035 Sum_probs=88.1
Q ss_pred hHHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCce-eeCCCcCCcccccccchHHHHHHHHhccCCCCC
Q 007714 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKP 472 (592)
Q Consensus 394 ~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v-i~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~ 472 (592)
....+.+++++.+...||.|+.|.+|-..+......+.. ..+..+ +..+ +.+.-+||+=+.+++.+..+.| +...|
T Consensus 6 ~~~~i~~~i~~~f~~~Gy~~I~tP~lE~~e~~~~~~g~~-~~~~~~~f~D~-~G~~l~LRpD~T~piaR~~~~~-~~~~p 82 (373)
T PRK12295 6 ASAAAAEALLASFEAAGAVRVDPPILQPAEPFLDLSGED-IRRRIFVTSDE-NGEELCLRPDFTIPVCRRHIAT-AGGEP 82 (373)
T ss_pred hHHHHHHHHHHHHHHcCCEEeeCCccccHHHhhhccCch-hhcceEEEECC-CCCEEeeCCCCcHHHHHHHHHc-CCCCC
Confidence 456788999999999999999999998765322211111 112345 7666 4456789999999999987776 44568
Q ss_pred eeEEEeCcEeecCCCcccccccccEEEEEEeCCCCC---HHHHHHHHHHHHHHhCCC
Q 007714 473 IKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSG---FELIHCLVDRIMEVIGTP 526 (592)
Q Consensus 473 ~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~g~~~~---f~~ikg~le~ll~~lgi~ 526 (592)
.|+|-+|+||..+. ...++..++++=+-|...+ =.|+-.++...|+.+|+.
T Consensus 83 ~R~~Y~g~VfR~~~---gr~rEf~Q~GvEiiG~~~~~~aDaEvi~l~~~~L~~lgl~ 136 (373)
T PRK12295 83 ARYAYLGEVFRQRR---DRASEFLQAGIESFGRADPAAADAEVLALALEALAALGPG 136 (373)
T ss_pred eEEEEEccEEECCC---CCCCcceEeeEEeeCCCCCccchHHHHHHHHHHHHHcCCC
Confidence 99999999998652 2346777777756564221 224556666678888875
No 50
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain. ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=96.29 E-value=0.089 Score=54.90 Aligned_cols=131 Identities=15% Similarity=0.146 Sum_probs=86.0
Q ss_pred hHHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCC-CCCCce-eeCCCcCCcccccccchHHHHHHHHhccC--C
Q 007714 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQT-DESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKD--H 469 (592)
Q Consensus 394 ~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~-~~~~~v-i~NP~s~e~~~lR~SLlpgLL~~~~~N~~--~ 469 (592)
-.+.+.+.+++.+...||+|+.|..|.+.+.. ...+..+ ..++.. +.. ..+.-+||++-.|++....+.+.. +
T Consensus 32 l~~~l~~~~~~~~~~~Gy~ev~tP~l~~~~l~-~~sg~~~~~~~~my~~~~--~~~~l~LRP~~~~~~~~~~~~~~~s~~ 108 (298)
T cd00771 32 IRNELEDFLRELQRKRGYQEVETPIIYNKELW-ETSGHWDHYRENMFPFEE--EDEEYGLKPMNCPGHCLIFKSKPRSYR 108 (298)
T ss_pred HHHHHHHHHHHHHHHcCCEEEECCeecCHHHH-hhCCCccccccCceEecc--CCceEEEcccCCHHHHHHHHhhccchh
Confidence 34567888899999999999999999998753 3222111 112334 522 223458999999999888887543 3
Q ss_pred CCCeeEEEeCcEeecCCCcc-cc---cccccEEEEEE-eCCCC---CHHHHHHHHHHHHHHhCCCC
Q 007714 470 PKPIKIYEVGDVVLLDEKKD-VG---ASCRRRLAALY-CGANS---GFELIHCLVDRIMEVIGTPF 527 (592)
Q Consensus 470 ~~~~~lFEiG~V~~~~~~~~-~~---~~~~~~l~~~~-~g~~~---~f~~ikg~le~ll~~lgi~~ 527 (592)
..|+|++++|.||+...+.. .| .++..+..+-+ +.... .+.++-.++..+++.||+..
T Consensus 109 ~LPlr~~~~g~vfR~E~~~~~~Gl~R~reF~q~e~~i~~~~e~~~~e~~e~l~~~~~~l~~lgl~~ 174 (298)
T cd00771 109 DLPLRLAEFGTVHRYEQSGALHGLTRVRGFTQDDAHIFCTPDQIKEEIKGVLDLIKEVYSDFGFFD 174 (298)
T ss_pred hCCeEEEEecCcccCCCCCCCCCccccccEEECCEEEEeCCcchHHHHHHHHHHHHHHHHHcCCCc
Confidence 57999999999998765432 11 23443433322 22222 23457788888899999863
No 51
>PRK09194 prolyl-tRNA synthetase; Provisional
Probab=96.17 E-value=0.12 Score=58.82 Aligned_cols=133 Identities=16% Similarity=0.156 Sum_probs=87.6
Q ss_pred ChHHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCC-CCCce-eeCCCcCCcccccccchHHHHHHHHhccC--
Q 007714 393 LALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTD-ESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKD-- 468 (592)
Q Consensus 393 ~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~-~~~~v-i~NP~s~e~~~lR~SLlpgLL~~~~~N~~-- 468 (592)
.-.+++.+.+|+.|...||+|+.+..|.+.+. +..-+..+. .++.. +.+...+ .=+||++--+.+...++....
T Consensus 48 ~~~~~i~~~i~~~~~~~G~~ei~~P~l~~~~l-~~~sg~~~~~~~emf~~~d~~~~-~l~LrPt~e~~~~~~~~~~~~s~ 125 (565)
T PRK09194 48 RVLRKIENIVREEMNKIGAQEVLMPALQPAEL-WQESGRWEEYGPELLRLKDRHGR-DFVLGPTHEEVITDLVRNEIKSY 125 (565)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEECcccCcHHH-HhhcCCccccchhceEEecCCCC-EEEECCCChHHHHHHHHhhhhhc
Confidence 34567889999999999999999999988764 332221111 12344 6664433 357999776666666665543
Q ss_pred CCCCeeEEEeCcEeecCCCcccc---cccccEEEEEEeCCC-----CCHHHHHHHHHHHHHHhCCCC
Q 007714 469 HPKPIKIYEVGDVVLLDEKKDVG---ASCRRRLAALYCGAN-----SGFELIHCLVDRIMEVIGTPF 527 (592)
Q Consensus 469 ~~~~~~lFEiG~V~~~~~~~~~~---~~~~~~l~~~~~g~~-----~~f~~ikg~le~ll~~lgi~~ 527 (592)
+..|+++|++|.+|+.+.....| .++..+..+-..+.+ ..+.++......+++.||+++
T Consensus 126 ~~LP~r~yqi~~~fR~E~rp~~Gl~R~reF~q~d~~~f~~~~~~a~~~~~~~~~~~~~i~~~lgl~~ 192 (565)
T PRK09194 126 KQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADEESLDETYDAMYQAYSRIFDRLGLDF 192 (565)
T ss_pred ccCCeEEEEeeCCccCCCCCCCcccccccEEEeeEEEEcCChHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 34699999999999765222223 355555555444432 235566677799999999973
No 52
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi.
Probab=96.06 E-value=0.088 Score=59.82 Aligned_cols=130 Identities=15% Similarity=0.177 Sum_probs=82.2
Q ss_pred ChHHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCC-CCCCce-eeCCCcCCccccccc----chHHHHH-HHHh
Q 007714 393 LALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQT-DESTAV-VGNPRTSDFEVVRTT----LMPGILK-TIGH 465 (592)
Q Consensus 393 ~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~-~~~~~v-i~NP~s~e~~~lR~S----LlpgLL~-~~~~ 465 (592)
.-.+++.+.+|+.|...||+|+.+..|.+.+ .+..-+... .+++.. +...... .=+||++ +. .++. .+..
T Consensus 48 rv~~~I~~~i~~~~~~~G~~ei~~P~l~~~e-l~~~sg~~~~~~~emf~~~dr~~~-~l~LrPT~Ee~~t-~~~~~~i~s 124 (568)
T TIGR00409 48 RVLKKVENIVREEMNKDGAIEVLLPALQPAE-LWQESGRWDTYGPELLRLKDRKGR-EFVLGPTHEEVIT-DLARNEIKS 124 (568)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEECCccchHH-HHhhcCCCCccchhcEEEecCCCC-EEEEcCCCcHHHH-HHHHHHHhh
Confidence 3456788999999999999999999999855 343322211 113345 6665443 3489997 44 3333 3332
Q ss_pred ccCCCCCeeEEEeCcEeecCCCcccc---cccccEEEEEEeCCC-----CCHHHHHHHHHHHHHHhCCCC
Q 007714 466 NKDHPKPIKIYEVGDVVLLDEKKDVG---ASCRRRLAALYCGAN-----SGFELIHCLVDRIMEVIGTPF 527 (592)
Q Consensus 466 N~~~~~~~~lFEiG~V~~~~~~~~~~---~~~~~~l~~~~~g~~-----~~f~~ikg~le~ll~~lgi~~ 527 (592)
.+..|+++|.+|.+|+.+.....| .++..+..+-..+.+ ..+..+......+++.||+++
T Consensus 125 --yr~LPlrlyqi~~~fR~E~rpr~Gl~R~REF~~~d~~~f~~~~~~a~~e~~~~~~~y~~if~~LgL~~ 192 (568)
T TIGR00409 125 --YKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHSDEESLDATYQKMYQAYSNIFSRLGLDF 192 (568)
T ss_pred --ccccCeEEEEeeCEeeCCCCCCCCccccccEEEEEEEEEeCChHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 245799999999999755222222 355555544444432 235555677799999999974
No 53
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=96.05 E-value=0.12 Score=52.93 Aligned_cols=133 Identities=11% Similarity=0.038 Sum_probs=86.5
Q ss_pred ChHHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCC-C-CCce-eeCCCc---CCcccccccchHHHHHHHHhc
Q 007714 393 LALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTD-E-STAV-VGNPRT---SDFEVVRTTLMPGILKTIGHN 466 (592)
Q Consensus 393 ~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~-~-~~~v-i~NP~s---~e~~~lR~SLlpgLL~~~~~N 466 (592)
.-.+++.+.+++.+...||+|+.+..|.+.+. +...+...+ . ++.. +...-. ++.=+||++--+.+....+.+
T Consensus 33 ~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~-~~~~g~~~~~~~~e~~~~~~~~~~~~~~~l~LrPt~e~~~~~~~~~~ 111 (264)
T cd00772 33 AILDKIENVLDKMFKEHGAQNALFPFFILASF-LEKEAEHDEGFSKELAVFKDAGDEELEEDFALRPTLEENIGEIAAKF 111 (264)
T ss_pred HHHHHHHHHHHHHHHHcCCeEEECCeeccHHH-HhhcCCcccccCccceEEEeCCCCccCceEEECCCCCHHHHHHHHhh
Confidence 34667889999999999999999999999874 333222211 1 1222 322111 134489999999999888877
Q ss_pred cC--CCCCeeEEEeCcEeecCCCcccc---cccccEEEEEEeCC-----CCCHHHHHHHHHHHHHHhC-CC
Q 007714 467 KD--HPKPIKIYEVGDVVLLDEKKDVG---ASCRRRLAALYCGA-----NSGFELIHCLVDRIMEVIG-TP 526 (592)
Q Consensus 467 ~~--~~~~~~lFEiG~V~~~~~~~~~~---~~~~~~l~~~~~g~-----~~~f~~ikg~le~ll~~lg-i~ 526 (592)
++ +..|++++++|.||+.+.....| .++....-+-..+. ...+..+....+.+++.|| ++
T Consensus 112 i~s~~~LPlrl~~~~~~fR~E~r~~~Gl~R~reF~~~e~~~~~~~~e~a~~e~~~~~~~~~~i~~~l~~lp 182 (264)
T cd00772 112 IKSWKDLPQHLNQIGNKFRDEIRPRFGFLRAREFIMKDGHSAHADAEEADEEFLNMLSAYAEIARDLAAID 182 (264)
T ss_pred hhhhhccCeeEEEEeCeEeCcCCCCCCcceeeEEEEeeeEEecCCHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 65 45799999999999866332233 23333333323321 1235556677799999999 76
No 54
>PLN02972 Histidyl-tRNA synthetase
Probab=95.91 E-value=0.12 Score=59.86 Aligned_cols=126 Identities=11% Similarity=0.080 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCce-eeCCCcCCcccccccchHHHHHHHHhccCCCCCe
Q 007714 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPI 473 (592)
Q Consensus 395 ~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v-i~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~~ 473 (592)
.+.+.+.+++.+...||.|+-|.+|-..+......+ .+.+..+ +..+ +.+.-.||+-+.+++.+.++.|.. .|+
T Consensus 344 re~I~~~L~~vFk~hGy~eI~TPvfE~~Ell~~k~G--ed~k~mY~f~D~-gGr~LaLRPDlTvPiAR~vA~n~~--~p~ 418 (763)
T PLN02972 344 REKAFSIITSVFKRHGATALDTPVFELRETLMGKYG--EDSKLIYDLADQ-GGELCSLRYDLTVPFARYVAMNGI--TSF 418 (763)
T ss_pred HHHHHHHHHHHHHHcCCEEccCCcccchHHhhcccC--cchhheEEEECC-CCCEEEeCCCChHHHHHHHHhCCC--Ccc
Confidence 346778899999999999999999976543211111 1123345 7665 345668999999999999998753 379
Q ss_pred eEEEeCcEeecCCCcccccccccEEEEEEeCCC----CCHHHHHHHHHHHHHHhCCC
Q 007714 474 KIYEVGDVVLLDEKKDVGASCRRRLAALYCGAN----SGFELIHCLVDRIMEVIGTP 526 (592)
Q Consensus 474 ~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~g~~----~~f~~ikg~le~ll~~lgi~ 526 (592)
|.|.+|+||+.+.......++..++++=+.|.. ++. |+-.++..+|..+|+.
T Consensus 419 KrYyiG~VFR~e~pqkGR~REF~Q~G~EIIG~~~~~~aDA-EVI~La~E~L~~LGi~ 474 (763)
T PLN02972 419 KRYQIAKVYRRDNPSKGRYREFYQCDFDIAGVYEPMGPDF-EIIKVLTELLDELDIG 474 (763)
T ss_pred eEEEeccEEecCCCCCCCCccceEEeEEEEcCCCcchhhH-HHHHHHHHHHHhCCCC
Confidence 999999999865443233567777777666642 233 4556667788888885
No 55
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=95.88 E-value=0.064 Score=61.17 Aligned_cols=131 Identities=14% Similarity=0.070 Sum_probs=89.1
Q ss_pred hHHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCC-CCCCCce-eeCCCcCCcccccccchHHHHHHHHhccC--C
Q 007714 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQ-TDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKD--H 469 (592)
Q Consensus 394 ~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~-~~~~~~v-i~NP~s~e~~~lR~SLlpgLL~~~~~N~~--~ 469 (592)
..+.+.+.+++.+...||+|+.|..|.+.+. +..-+.. ...++.. +... ..+.-+||+.-.|+.....+.+.+ +
T Consensus 208 ~~~~l~~~~~~~~~~~Gy~ev~tP~le~~~l-~~~sg~~~~~~~~my~~~d~-~~~~~~LRP~~~~~~~~~~~~~~~s~~ 285 (575)
T PRK12305 208 IRREIEDYLRKEHLKRGYEFVYTPHIGKSDL-WKTSGHLDNYKENMFPPMEI-DEEEYYLKPMNCPGHILIYKSRLRSYR 285 (575)
T ss_pred HHHHHHHHHHHHHHHcCCEEEECCccCCHHH-HhhcCCcccchhhccccccc-CCceEEEecCCCHHHHHHHhcccCChh
Confidence 4567889999999999999999999999875 3322211 1112233 4322 345678999999999888887764 2
Q ss_pred CCCeeEEEeCcEeecCCCcc-cc---cccccEEEEEEeCCC----CCHHHHHHHHHHHHHHhCCC
Q 007714 470 PKPIKIYEVGDVVLLDEKKD-VG---ASCRRRLAALYCGAN----SGFELIHCLVDRIMEVIGTP 526 (592)
Q Consensus 470 ~~~~~lFEiG~V~~~~~~~~-~~---~~~~~~l~~~~~g~~----~~f~~ikg~le~ll~~lgi~ 526 (592)
..|+|+|++|.||+...... .| .++..+..+-+-|.. ..+.++..++..++..||++
T Consensus 286 ~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~if~~~~~~~~e~~e~i~l~~~~~~~lgl~ 350 (575)
T PRK12305 286 DLPLRLAEFGTVYRYEKSGVLHGLTRVRGFTQDDAHIFCTPDQIEDEILKVLDFVLELLKDFGFK 350 (575)
T ss_pred hCCHhhEEecccccCCCCCCCcCcccccCeEEcceEEEeCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 46999999999998654321 12 244444444333321 13577888899999999997
No 56
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer.
Probab=95.86 E-value=0.061 Score=56.11 Aligned_cols=129 Identities=11% Similarity=0.080 Sum_probs=86.4
Q ss_pred hHHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCC-CCCCCCce-eeCCCcCCcccccccchHHHHHHHHhccC--C
Q 007714 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNR-QTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKD--H 469 (592)
Q Consensus 394 ~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~-~~~~~~~v-i~NP~s~e~~~lR~SLlpgLL~~~~~N~~--~ 469 (592)
-.+.+.+.+++.+...||+|+.+..|.+.+. ++.-+. +...++.. +.+ +.-+||++--+.+....+.... +
T Consensus 54 l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~l-~~~sg~~~~~~~~~f~v~~----~~~~L~pt~e~~~~~l~~~~~~s~~ 128 (297)
T cd00770 54 LERALINFALDFLTKRGFTPVIPPFLVRKEV-MEGTGQLPKFDEQLYKVEG----EDLYLIATAEVPLAALHRDEILEEE 128 (297)
T ss_pred HHHHHHHHHHHHHHHCCCEEEECcccccHHH-HhhcCcCccChhcccEecC----CCEEEeecCCHHHHHHHhcccCCHh
Confidence 4456888899999999999999999999875 333222 11112334 654 4458999999999877765433 3
Q ss_pred CCCeeEEEeCcEeecCCCc----ccc---cccccEEEE-EEeCC---CCCHHHHHHHHHHHHHHhCCCC
Q 007714 470 PKPIKIYEVGDVVLLDEKK----DVG---ASCRRRLAA-LYCGA---NSGFELIHCLVDRIMEVIGTPF 527 (592)
Q Consensus 470 ~~~~~lFEiG~V~~~~~~~----~~~---~~~~~~l~~-~~~g~---~~~f~~ikg~le~ll~~lgi~~ 527 (592)
..|+++|++|.+|+..... ..| .++....-+ .++.. ...|.++....+.+++.||++.
T Consensus 129 ~LPlr~~~~~~~fR~E~~~~g~~~~GL~R~reF~~~e~~~f~~~e~~~~~~~~~l~~~~~i~~~lgl~~ 197 (297)
T cd00770 129 ELPLKYAGYSPCFRKEAGSAGRDTRGLFRVHQFEKVEQFVFTKPEESWEELEELISNAEEILQELGLPY 197 (297)
T ss_pred hCCchheecChhHhCccccCCCCCCCceEEEeeeeeeEEEEECchHHHHHHHHHHHHHHHHHHHcCCcE
Confidence 4799999999999754331 122 133333222 22322 2347788899999999999983
No 57
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=95.84 E-value=0.075 Score=61.35 Aligned_cols=131 Identities=12% Similarity=0.112 Sum_probs=90.5
Q ss_pred hHHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCC-CCCce-eeCCCcCCcccccccchHHHHHHHHhccCC--
Q 007714 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTD-ESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDH-- 469 (592)
Q Consensus 394 ~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~-~~~~v-i~NP~s~e~~~lR~SLlpgLL~~~~~N~~~-- 469 (592)
-.+.+.+.+++.+...||+|+.|..|.+.+. +...+..+. .++.. +... ..+.=+||+...|+.....+.+.+.
T Consensus 272 ~~~~i~~~~~~~~~~~Gy~ei~tP~le~~~l-~~~~g~~~~~~~~my~~~d~-~~~~~~LRP~~~~~~~r~~~~~~~s~~ 349 (638)
T PRK00413 272 IRRELERYIRRKLRKAGYQEVKTPQILDREL-WETSGHWDHYRENMFPTTES-DGEEYALKPMNCPGHVQIYKQGLRSYR 349 (638)
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCeeCCHHH-HHhcCChhhhhhccceeecC-CCcEEEEecCCcHHHHHHHhCcCCChh
Confidence 4567889999999999999999999999875 332221011 12333 4332 4456699999999999999887653
Q ss_pred CCCeeEEEeCcEeecCCCcc-cc---cccccEEEEEEeCCC----CCHHHHHHHHHHHHHHhCCC
Q 007714 470 PKPIKIYEVGDVVLLDEKKD-VG---ASCRRRLAALYCGAN----SGFELIHCLVDRIMEVIGTP 526 (592)
Q Consensus 470 ~~~~~lFEiG~V~~~~~~~~-~~---~~~~~~l~~~~~g~~----~~f~~ikg~le~ll~~lgi~ 526 (592)
..|+|+|++|.||+.+.... .| .++..+..+=+-|.. .++.++-.+...+++.||++
T Consensus 350 ~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~~~g~~~~~~~e~~eii~l~~~~~~~lg~~ 414 (638)
T PRK00413 350 DLPLRLAEFGTVHRYEPSGALHGLMRVRGFTQDDAHIFCTPEQIEEEVKKVIDLILDVYKDFGFE 414 (638)
T ss_pred hCCceeeeccCeecCCCCCCCcCcceeeeeEEeeEEEEcCHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 46999999999998654321 12 245555555444432 24577888888999999995
No 58
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=95.75 E-value=0.11 Score=58.98 Aligned_cols=132 Identities=14% Similarity=0.144 Sum_probs=89.1
Q ss_pred hHHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCC-CCCce-eeCCCcCCcccccccchHHHHHHHHhccCC--
Q 007714 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTD-ESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDH-- 469 (592)
Q Consensus 394 ~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~-~~~~v-i~NP~s~e~~~lR~SLlpgLL~~~~~N~~~-- 469 (592)
-.+.+.+.+|+.+...||+|+.|..|.+.+. +..-+..+. .++.. +.. ...+.-+|||.-.|++....+.+...
T Consensus 202 ~~~~i~~~~~~~~~~~G~~ev~tP~l~~~~l-~~~sg~~~~~~~emy~~~d-~~~~~~~LrP~~~~~i~~~~~~~~~s~~ 279 (563)
T TIGR00418 202 IRNLLEDFVRQKQIKYGYMEVETPIMYDLEL-WEISGHWDNYKERMFPFTE-LDNREFMLKPMNCPGHFLIFKSSLRSYR 279 (563)
T ss_pred HHHHHHHHHHHHHHHcCCEEEECCccCCHHH-HHhcCCcccchhhcceecc-CCCceEEEecCCCHHHHHHHhCcCCChH
Confidence 4567889999999999999999999997764 433221110 12223 332 23355689999999999999988753
Q ss_pred CCCeeEEEeCcEeecCCCcc-c---ccccccEEEEEEeCC----CCCHHHHHHHHHHHHHHhCCCC
Q 007714 470 PKPIKIYEVGDVVLLDEKKD-V---GASCRRRLAALYCGA----NSGFELIHCLVDRIMEVIGTPF 527 (592)
Q Consensus 470 ~~~~~lFEiG~V~~~~~~~~-~---~~~~~~~l~~~~~g~----~~~f~~ikg~le~ll~~lgi~~ 527 (592)
..|+|+|++|.+|+.+.+.. . ..++..+..+-+.+. ...|.++-.+...+++.||++.
T Consensus 280 ~lP~rl~~~g~~fR~E~~g~~~Gl~R~reF~q~~~~~~~~~~~~~~e~~~~i~~~~~~~~~lgl~~ 345 (563)
T TIGR00418 280 DLPLRIAELGYSHRYEQSGELHGLMRVRGFTQDDAHIFCTEDQIKEEFKNQFRLIQKVYSDFGFSF 345 (563)
T ss_pred HCCceeeEeccccCCCCCcCCcCcccccceEEeeeEEEcCHHHHHHHHHHHHHHHHHHHHHcCCCe
Confidence 46999999999998664321 1 124444444433332 1235667888888999999873
No 59
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=95.59 E-value=0.15 Score=55.57 Aligned_cols=132 Identities=20% Similarity=0.226 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCC--CCCce-eeCCCcCCcccccccchHHHHHHHHhccCC-C
Q 007714 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTD--ESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDH-P 470 (592)
Q Consensus 395 ~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~--~~~~v-i~NP~s~e~~~lR~SLlpgLL~~~~~N~~~-~ 470 (592)
.+.+.+.+|+.+...||.|+-|..|-..+......+...+ .+... ...- ....=.||+-+.+++.+++..|... +
T Consensus 21 ~~~i~~~~~~v~~~yGf~eI~TPifE~telf~r~~Ge~td~v~kemY~F~Dk-ggr~laLRpe~Tapv~R~~~en~~~~~ 99 (429)
T COG0124 21 REYIESTIRKVFESYGFSEIRTPIFEYTELFARKSGEETDVVEKEMYTFKDK-GGRSLALRPELTAPVARAVAENKLDLP 99 (429)
T ss_pred HHHHHHHHHHHHHHcCCEeccCccccchhHhhhccCCcccccccceEEEEeC-CCCEEEecccCcHHHHHHHHhcccccc
Confidence 4567899999999999999999999876642222221111 02222 4443 4555689999999999999999664 5
Q ss_pred CCeeEEEeCcEeecCCCcccccccccEEEEEEeCCCCCH--HHHHHHHHHHHHHhCCCC
Q 007714 471 KPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGF--ELIHCLVDRIMEVIGTPF 527 (592)
Q Consensus 471 ~~~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~g~~~~f--~~ikg~le~ll~~lgi~~ 527 (592)
.|+|+|-+|.||+-+.......|+.+++.+=+.|...-+ .++-.++..+++.||+..
T Consensus 100 ~p~k~yy~g~vfRyErPQ~GR~RqF~Q~g~E~iG~~~~~~DAEvi~l~~~~l~~lGi~~ 158 (429)
T COG0124 100 KPLKLYYFGPVFRYERPQKGRYRQFYQFGVEVIGSDSPDADAEVIALAVEILEALGIGG 158 (429)
T ss_pred CCeeEEEecceecCCCCCCCCceeeEEcCeEEeCCCCcccCHHHHHHHHHHHHHcCCCc
Confidence 689999999999865443333466777766555653322 355678888999999974
No 60
>PLN02908 threonyl-tRNA synthetase
Probab=95.52 E-value=0.097 Score=60.92 Aligned_cols=184 Identities=14% Similarity=0.169 Sum_probs=109.9
Q ss_pred hHHhhccCCcCC-HHHHHHHHHhcCCeEEEcCCCCCcceEEEEcCCCCcccCCCchhHhHHHHHhCCCCCCCCCCCCC--
Q 007714 314 SYINHTIGVSLE-AEEVTSLLNRMQLHAERSASGNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYGYNNIPKRKPASV-- 390 (592)
Q Consensus 314 ~~i~~~LG~~l~-~~~i~~~L~~lg~~~~~~~~~~~~~~~~V~vP~~R~DI~~~~DliEEIar~yGydni~~~~p~~~-- 390 (592)
+.+.|+-|+.++ .+++.+.|+.+. ++... +. -++++..+.=-|....|.+.
T Consensus 263 ~~lqRi~G~sfp~~~~l~~~~~~~~-e~~~r----dH---------------------~~lg~~~~lf~~~~~~~G~~~~ 316 (686)
T PLN02908 263 ESLQRVYGISFPDKKLLKEYKHRIE-EAKKR----DH---------------------RLLGQKQELFFFHELSPGSCFF 316 (686)
T ss_pred hhhEEEeeeccCChHHHHHHHhhhh-hcccc----CH---------------------HHHHHhcCCeeecCCCCcceEE
Confidence 467788888875 467777777754 11110 12 12332222222222223322
Q ss_pred ---CCChHHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCC-CCCCce-eeCCCcCCcccccccchHHHHHHHHh
Q 007714 391 ---KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQT-DESTAV-VGNPRTSDFEVVRTTLMPGILKTIGH 465 (592)
Q Consensus 391 ---~~~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~-~~~~~v-i~NP~s~e~~~lR~SLlpgLL~~~~~ 465 (592)
...-.+.+.+.+|+.+...||+||.|..+.+.+.... -+... ..++.. + -+..+.-.||++.-|++....+.
T Consensus 317 lP~g~~i~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~-sGh~~~~~~~mf~~--~~~~~~~~Lrp~~~~~~~~~~~~ 393 (686)
T PLN02908 317 LPHGARIYNKLMDFIREQYWERGYDEVITPNIYNMDLWET-SGHAAHYKENMFVF--EIEKQEFGLKPMNCPGHCLMFAH 393 (686)
T ss_pred echHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHhh-cCCccccchhccEE--ecCCeeEEEcCCCcHHHHHHHhc
Confidence 3344567889999999999999999999999885332 22111 112222 3 13345668999999999988877
Q ss_pred ccCC--CCCeeEEEeCcEeecCCCcc-cc---cccccEEEEEE-eCC---CCCHHHHHHHHHHHHHHhCCC
Q 007714 466 NKDH--PKPIKIYEVGDVVLLDEKKD-VG---ASCRRRLAALY-CGA---NSGFELIHCLVDRIMEVIGTP 526 (592)
Q Consensus 466 N~~~--~~~~~lFEiG~V~~~~~~~~-~~---~~~~~~l~~~~-~g~---~~~f~~ikg~le~ll~~lgi~ 526 (592)
..+. ..|+|++++|.+|+.+.+.. .| .++..+.-+-+ +-. ...+.++-..+..++..||++
T Consensus 394 ~~~s~r~LPlr~~~~g~~fR~E~~~~l~Gl~RvReF~q~d~~if~~~~q~~~e~~~~l~~~~~v~~~lG~~ 464 (686)
T PLN02908 394 RVRSYRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCREDQIKDEVKGVLDFLDYVYEVFGFT 464 (686)
T ss_pred cccChhhCCHhHEEeeccccCCCCcCCcCccccccEEEeeEEEEcCHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 6552 46999999999998655421 12 23333333322 221 123455666777788888886
No 61
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=95.21 E-value=0.15 Score=58.84 Aligned_cols=184 Identities=13% Similarity=0.148 Sum_probs=108.9
Q ss_pred HHhhccCCcCC-HHHHHHHHHhcCCeEEEcCCCCCcceEEEEcCCCCcccCCCchhHhHHHHHhCCCCCCCCCCCCC---
Q 007714 315 YINHTIGVSLE-AEEVTSLLNRMQLHAERSASGNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYGYNNIPKRKPASV--- 390 (592)
Q Consensus 315 ~i~~~LG~~l~-~~~i~~~L~~lg~~~~~~~~~~~~~~~~V~vP~~R~DI~~~~DliEEIar~yGydni~~~~p~~~--- 390 (592)
.+.|+-|+.++ .++....|+.+. .+... +. -++++.+|.=-++...+...
T Consensus 217 ~l~Ri~g~a~~~~~~l~~~~~~~~-~~~~~----dH---------------------~~l~~~~~l~~~~~~~~G~~~~~ 270 (639)
T PRK12444 217 VLQRIYGVAFSSQKELEEYLHFVE-EAAKR----NH---------------------RKLGKELELFMFSEEAPGMPFYL 270 (639)
T ss_pred ceEEEEEEecCCHHHHHHHHHHHH-HhccC----CH---------------------HHHHHHcCCcccccccCcceEEe
Confidence 46777888774 577777777764 11110 11 13344433112333333322
Q ss_pred --CCChHHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCce-eeCCCcCCcccccccchHHHHHHHHhcc
Q 007714 391 --KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNK 467 (592)
Q Consensus 391 --~~~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v-i~NP~s~e~~~lR~SLlpgLL~~~~~N~ 467 (592)
...-.+.+.+.+++.+...||+|+.|..|.+.+. +..-+..+.-++.+ .. ....+.=+||++--|++....+...
T Consensus 271 p~g~~~~~~i~~~~~~~~~~~G~~~v~tP~l~~~~l-~~~sG~~~~~~~emy~~-d~~~~~~~LrP~~~~~~~~~~~~~~ 348 (639)
T PRK12444 271 PKGQIIRNELEAFLREIQKEYNYQEVRTPFMMNQEL-WERSGHWDHYKDNMYFS-EVDNKSFALKPMNCPGHMLMFKNKL 348 (639)
T ss_pred eCHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHH-HhhcCChhhhhhhcCee-cCCCcEEEEccCCCHHHHHHHhCcc
Confidence 2234556889999999999999999999999875 33222111111122 21 2233444699999999999997665
Q ss_pred C--CCCCeeEEEeCcEeecCCCcc-cc---cccccEEEEEEeCC----CCCHHHHHHHHHHHHHHhCCC
Q 007714 468 D--HPKPIKIYEVGDVVLLDEKKD-VG---ASCRRRLAALYCGA----NSGFELIHCLVDRIMEVIGTP 526 (592)
Q Consensus 468 ~--~~~~~~lFEiG~V~~~~~~~~-~~---~~~~~~l~~~~~g~----~~~f~~ikg~le~ll~~lgi~ 526 (592)
+ +..|+|+|++|.+|+.+.... .| .++.....+-+-+. ...+.++-.....+++.||++
T Consensus 349 ~sy~~LP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~d~~~f~~~~~~~~e~~~~~~~~~~i~~~lgl~ 417 (639)
T PRK12444 349 HSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHLFVTPDQIEDEIKSVMAQIDYVYKTFGFE 417 (639)
T ss_pred cChhhCCceeEEeccccCCCCCcCCcCcceeeeeEEccEEEECCHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 4 246999999999998654321 12 23333333222222 122455778888889999986
No 62
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria.
Probab=95.20 E-value=0.2 Score=51.21 Aligned_cols=156 Identities=13% Similarity=0.042 Sum_probs=93.4
Q ss_pred HhHHHHHhCCCCCCCCCCCCC-----CCChHHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcC-CCCCCCCce-eeC
Q 007714 370 MEDVAIAYGYNNIPKRKPASV-----KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLN-RQTDESTAV-VGN 442 (592)
Q Consensus 370 iEEIar~yGydni~~~~p~~~-----~~~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~-~~~~~~~~v-i~N 442 (592)
-.++++-.|.-.+. ..+... ...-.+.+.+.+++.+...||+|+.+..+.+.+.....-+ .....++.. +.+
T Consensus 6 ~~~l~~~~~~~d~~-~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~sg~~~~f~~~~f~~~~ 84 (261)
T cd00778 6 YTEVITKAELIDYG-PVKGCMVFRPYGYAIWENIQKILDKEIKETGHENVYFPLLIPESELEKEKEHIEGFAPEVAWVTH 84 (261)
T ss_pred HHHHHHHhCCcccC-CCCCeEEEcccHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhhhcchhhcCcceEEEEe
Confidence 35566666654332 122222 2334567888899999999999999999999764211111 111112344 544
Q ss_pred CCc---CCcccccccchHHHHHHHHhccC--CCCCeeEEEeCcEeecCCCccccc---ccccEEEE--EEeCC---CCCH
Q 007714 443 PRT---SDFEVVRTTLMPGILKTIGHNKD--HPKPIKIYEVGDVVLLDEKKDVGA---SCRRRLAA--LYCGA---NSGF 509 (592)
Q Consensus 443 P~s---~e~~~lR~SLlpgLL~~~~~N~~--~~~~~~lFEiG~V~~~~~~~~~~~---~~~~~l~~--~~~g~---~~~f 509 (592)
--. ++--+||++--|.+-...+.... +..|++++++|.+|+.+.....|. ++....-+ +.+.. ...+
T Consensus 85 ~~~~~~~~~~~L~Pt~e~~~~~~~~~~i~s~r~LPlr~~~~~~~fR~E~~~~~Gl~R~reF~~~d~h~~~~~~e~~~~~~ 164 (261)
T cd00778 85 GGLEELEEPLALRPTSETAIYPMFSKWIRSYRDLPLKINQWVNVFRWETKTTRPFLRTREFLWQEGHTAHATEEEAEEEV 164 (261)
T ss_pred cCCcccCCcEEEcCCCCHHHHHHHHhhccchhhcCHHHHhhhhhccCCCCCCCceeEeeeeeeeceeeccCCHHHHHHHH
Confidence 221 23468999977777766666544 347999999999998654322221 22222111 11211 1247
Q ss_pred HHHHHHHHHHHHHh-CCC
Q 007714 510 ELIHCLVDRIMEVI-GTP 526 (592)
Q Consensus 510 ~~ikg~le~ll~~l-gi~ 526 (592)
.++....+.+++.| |++
T Consensus 165 ~~~~~~~~~i~~~llgl~ 182 (261)
T cd00778 165 LQILDLYKEFYEDLLAIP 182 (261)
T ss_pred HHHHHHHHHHHHHhCCCe
Confidence 77888899999998 998
No 63
>PRK12325 prolyl-tRNA synthetase; Provisional
Probab=95.15 E-value=0.09 Score=57.93 Aligned_cols=134 Identities=12% Similarity=0.064 Sum_probs=81.2
Q ss_pred CChHHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCC-CCCce-eeCCCcCCcccccccchHHHHHHHHhccC-
Q 007714 392 PLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTD-ESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKD- 468 (592)
Q Consensus 392 ~~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~-~~~~v-i~NP~s~e~~~lR~SLlpgLL~~~~~N~~- 468 (592)
..-.+++.+.+|+.+...||+|+.+..|.+.+. +..-+..+. .++.. +.... .+.=+||++--|......+...+
T Consensus 47 ~~i~~~i~~~i~~~~~~~G~~ev~~P~l~~~~l-~~~sg~~~~~~~emf~~~d~~-~~~~~L~Pt~e~~~~~~~~~~~~s 124 (439)
T PRK12325 47 LKVLKKIENIVREEQNRAGAIEILMPTIQPADL-WRESGRYDAYGKEMLRIKDRH-DREMLYGPTNEEMITDIFRSYVKS 124 (439)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEECCccccHHH-HhhcCCccccchhheEEecCC-CCEEEEcCCCcHHHHHHHHHHhhh
Confidence 344667899999999999999999999998764 322121111 12344 55443 34457898554444444433332
Q ss_pred -CCCCeeEEEeCcEeecCCCcccc---cccccEE-EEEE-eC---CCCCHHHHHHHHHHHHHHhCCCC
Q 007714 469 -HPKPIKIYEVGDVVLLDEKKDVG---ASCRRRL-AALY-CG---ANSGFELIHCLVDRIMEVIGTPF 527 (592)
Q Consensus 469 -~~~~~~lFEiG~V~~~~~~~~~~---~~~~~~l-~~~~-~g---~~~~f~~ikg~le~ll~~lgi~~ 527 (592)
+..|++++++|.+|+.+.....| .++...- +-.+ +. ....+.++......+++.||++.
T Consensus 125 yrdLPlrl~q~~~~fR~E~~~~~GL~R~reF~~~D~h~f~~~~~~a~~~~~~~~~~~~~i~~~lgl~~ 192 (439)
T PRK12325 125 YKDLPLNLYHIQWKFRDEIRPRFGVMRGREFLMKDAYSFDLDEEGARHSYNRMFVAYLRTFARLGLKA 192 (439)
T ss_pred chhhchHheEecCEecCCCCCCCCccccceEeEeccEEEeCCHHHHHHHHHHHHHHHHHHHHHcCCce
Confidence 35799999999999765332222 1222221 0011 11 12246778888889999999874
No 64
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=95.14 E-value=0.12 Score=58.47 Aligned_cols=145 Identities=17% Similarity=0.165 Sum_probs=92.5
Q ss_pred HHhhccCCcC-CHHHHHHHHHhcCCeEEEcCCCCCcceEEEEcCCCCcccCCCchhHhHHHHHhCCCCCCCC-CCCCC--
Q 007714 315 YINHTIGVSL-EAEEVTSLLNRMQLHAERSASGNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYGYNNIPKR-KPASV-- 390 (592)
Q Consensus 315 ~i~~~LG~~l-~~~~i~~~L~~lg~~~~~~~~~~~~~~~~V~vP~~R~DI~~~~DliEEIar~yGydni~~~-~p~~~-- 390 (592)
.+.|+-|+.. +.++..+.|++|. .+... |. -+|++-.+.=-+++. .|.+.
T Consensus 110 ~l~Riyg~~f~~~~~l~~~~~~~e-ea~~r----dH---------------------r~lg~~l~lf~~~~~~~~G~~~~ 163 (545)
T PRK14799 110 QYVRIRGVAFETEEQLKDYLTWLE-KAEET----DH---------------------RLIGEKLDLFSFHEEAGSGLVLF 163 (545)
T ss_pred eeEEEEEeecCCHHHHHHHHHHHH-hcccC----CH---------------------HHHHHHcCCcccccccCCcceEE
Confidence 4667788876 5688999999876 22211 12 233444333333322 22222
Q ss_pred ---CCChHHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCC-CCCCce-eeCCCcCCcccccccchHHHHHHHHh
Q 007714 391 ---KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQT-DESTAV-VGNPRTSDFEVVRTTLMPGILKTIGH 465 (592)
Q Consensus 391 ---~~~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~-~~~~~v-i~NP~s~e~~~lR~SLlpgLL~~~~~ 465 (592)
...-.+.+.+.+|+.+...||+||.|..+.+.+- +..-+..+ ..++.. + -+..+.-.||+..-|++....+.
T Consensus 164 lP~G~~i~~~L~~~~r~~~~~~Gy~eV~TP~i~~~eL-~k~SGh~~~y~~~mf~~--~~~~e~~~LrPm~cp~~~~~~~~ 240 (545)
T PRK14799 164 HPKGQTIRNELIAFMREINDSMGYQEVYTSHVFKTDI-WKISGHYTLYRDKLIVF--NMEGDEYGVKPMNCPAHILIYKS 240 (545)
T ss_pred cChHHHHHHHHHHHHHHHHHHcCCeEEECCccchHHH-Hhhccccccchhhccee--eccCceEEeccCCCHHHHHHHhc
Confidence 2334567889999999999999999999877654 33221111 011222 3 12235568999999999999988
Q ss_pred ccCC--CCCeeEEEeCcEeecCCCc
Q 007714 466 NKDH--PKPIKIYEVGDVVLLDEKK 488 (592)
Q Consensus 466 N~~~--~~~~~lFEiG~V~~~~~~~ 488 (592)
+.+. ..|+|+||+|.||+.+.+.
T Consensus 241 ~~~SyrdLPlR~~e~g~vfR~E~sg 265 (545)
T PRK14799 241 KPRTYRDLPIRFSEFGHVYRWEKKG 265 (545)
T ss_pred cccChhhCCHhhEEecceecCCCCC
Confidence 7652 5799999999999876543
No 65
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=95.11 E-value=0.23 Score=51.03 Aligned_cols=114 Identities=12% Similarity=0.017 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCce-eeCCCcCCcccccccchHHHHHHHHhccCCCCCe
Q 007714 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPI 473 (592)
Q Consensus 395 ~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v-i~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~~ 473 (592)
...+.+.+|+.|...||.||-|..+++..- +.+.+.. +........-.||+|---.+-..++.+. -
T Consensus 4 rs~i~~~ir~~f~~~gf~ev~tP~l~~~~~--------~~~~~~f~~~~~~~g~~~~L~~Spql~~~~~~~~~~-----~ 70 (269)
T cd00669 4 RSKIIKAIRDFMDDRGFLEVETPMLQKITG--------GAGARPFLVKYNALGLDYYLRISPQLFKKRLMVGGL-----D 70 (269)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCEEeccCC--------ccccceEEeeecCCCCcEEeecCHHHHHHHHHhcCC-----C
Confidence 346788999999999999999999986421 0011233 4221123445788665544333344432 3
Q ss_pred eEEEeCcEeecCCCcccccccccEEEEEEeCCCCCHHHHHHHHHHHHHHh
Q 007714 474 KIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVI 523 (592)
Q Consensus 474 ~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~g~~~~f~~ikg~le~ll~~l 523 (592)
|+|+||+||+.+..+..+..+.+++-+-.+.. ++.++...++.++..+
T Consensus 71 ~vf~i~~~fR~e~~~~~hl~EF~~le~e~~~~--~~~dvm~~~e~lv~~i 118 (269)
T cd00669 71 RVFEINRNFRNEDLRARHQPEFTMMDLEMAFA--DYEDVIELTERLVRHL 118 (269)
T ss_pred cEEEEecceeCCCCCCCcccceeEEEEEEecC--CHHHHHHHHHHHHHHH
Confidence 89999999988754445556677777644443 8888888887776543
No 66
>TIGR00471 pheT_arch phenylalanyl-tRNA synthetase, beta subunit. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from eukaryotic cytosol, the Archaea, and spirochetes.
Probab=94.78 E-value=0.079 Score=60.09 Aligned_cols=70 Identities=17% Similarity=0.189 Sum_probs=61.5
Q ss_pred CeEEechHHHHHHhCCCCCHHHHHHHhhhcCCcccccchhHHHHhhhccccccCCCCCCceEEEEecCCCcccccCHHHH
Q 007714 2 PTVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEVPANRYDLLCLEGI 81 (592)
Q Consensus 2 p~i~~~~~~l~~~~g~~~~~~e~~~~l~~~g~e~e~~~~~~~~~~~~~~~~~~~~~~~~d~i~~ieit~NR~Dlls~~Gi 81 (592)
++|.++.+++.+++|.+++.+|+.+.|..+|++++.. + | .+++.+|+.|+|+..-.=|
T Consensus 278 ~~i~~~~~~i~~~lG~~l~~~ei~~iL~~Lg~~v~~~-~--------------------~-~~~v~vP~~R~DI~~~~Dl 335 (551)
T TIGR00471 278 RFMEVSVEYINSLLGLNLSADEIAHSLKKMRLDAVQS-D--------------------E-KLKVVIPAYRVDILHEVDI 335 (551)
T ss_pred ceEEecHHHHHHHhCCCCCHHHHHHHHHHhCCCeEec-C--------------------C-cEEEEcCCCccccCchhHH
Confidence 4699999999999999999999999999999998421 1 1 3889999999999999999
Q ss_pred HHHHHHhcCCCC
Q 007714 82 AQALRVFNKQQE 93 (592)
Q Consensus 82 ARel~a~~g~~~ 93 (592)
+-|++-++|-..
T Consensus 336 iEEIaR~yGyd~ 347 (551)
T TIGR00471 336 IEDVAIGYGYNN 347 (551)
T ss_pred HHHHHHHhCccc
Confidence 999999988543
No 67
>PRK00960 seryl-tRNA synthetase; Provisional
Probab=94.62 E-value=0.23 Score=55.46 Aligned_cols=146 Identities=18% Similarity=0.177 Sum_probs=84.5
Q ss_pred HHHHHHHHHH-HHHCCceEEeeccccChHHHHHHcCCCCCCCCce-eeCC----------------------------Cc
Q 007714 396 NEFSDLMRLE-IAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNP----------------------------RT 445 (592)
Q Consensus 396 ~~~~~~lr~~-l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v-i~NP----------------------------~s 445 (592)
+.+.+.+++. ....||+|+.+..|.+.+........+.-..... +..| +.
T Consensus 227 ~aL~~~i~d~~~~k~Gyeev~~P~Li~~ell~ksGhl~~F~e~my~V~~~~~d~e~~~~~~~~l~~T~Evpl~~~~~~L~ 306 (517)
T PRK00960 227 RAFEKLVIEEVLKPLGFDECLFPKLIPLEVMYKMRYLEGLPEGMYYVCPPKRDPEYFEEFVDEMMVKKEVPIEKLKEKLR 306 (517)
T ss_pred HHHHHHHHHhhHhhcCCeEEECCcccCHHHHhhcCCccCChhhceEeeccccccccccchhhhccccccccccccccccc
Confidence 3455556554 4556999999999999876332211111011222 4322 22
Q ss_pred CCcccccccchHHHHHHHHhccC--CCCCeeEEE-eCcEeecCCCccccc---ccccEEEEEEeCCC----CCHHHHHHH
Q 007714 446 SDFEVVRTTLMPGILKTIGHNKD--HPKPIKIYE-VGDVVLLDEKKDVGA---SCRRRLAALYCGAN----SGFELIHCL 515 (592)
Q Consensus 446 ~e~~~lR~SLlpgLL~~~~~N~~--~~~~~~lFE-iG~V~~~~~~~~~~~---~~~~~l~~~~~g~~----~~f~~ikg~ 515 (592)
...-+||++--|......+.=.. +.+|+|+|+ .|.||+...+...|. ++..+.-+.+.+.. .-+..+...
T Consensus 307 ~~~yvLrPa~Cp~~y~~~~~~ils~rdLPLrl~e~sG~cFR~EsGs~~GL~RV~eF~kvE~h~f~tpEqs~ee~e~ll~~ 386 (517)
T PRK00960 307 DPGYVLAPAQCEPFYQFFQGETVDVDELPIKFFDRSGWTYRWEGGGAHGLERVNEFHRIEIVWLGTPEQVEEIRDELLKY 386 (517)
T ss_pred cccccccccCcHHHHHHHhCCcCChhhCCHHHhhccCCceeCCCCCCCCCcccceeEEEEEEEEeCHHHHHHHHHHHHHH
Confidence 23348999999999877773222 346999999 679998764322222 33333333333321 235556677
Q ss_pred HHHHHHHhCCCCCCCCCCccEEEEecCCCCccCCc
Q 007714 516 VDRIMEVIGTPFVPVGDDTGYYIQRSDEPEFLPGR 550 (592)
Q Consensus 516 le~ll~~lgi~~~~~~~~~~~~~~~~~~~~f~pgr 550 (592)
.+.+++.||++ ++-...++|+|..|+
T Consensus 387 ~e~i~~~LgLp---------~~r~v~~DPFf~~~~ 412 (517)
T PRK00960 387 AHILAEKLDLE---------YWREVGDDPFYLEGR 412 (517)
T ss_pred HHHHHHHcCCC---------ceEEecccccccccC
Confidence 78888999998 333444556665543
No 68
>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=94.15 E-value=0.12 Score=58.51 Aligned_cols=70 Identities=19% Similarity=0.193 Sum_probs=61.5
Q ss_pred CeEEechHHHHHHhCCCCCHHHHHHHhhhcCCcccccchhHHHHhhhccccccCCCCCCceEEEEecCCCcccccCHHHH
Q 007714 2 PTVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEVPANRYDLLCLEGI 81 (592)
Q Consensus 2 p~i~~~~~~l~~~~g~~~~~~e~~~~l~~~g~e~e~~~~~~~~~~~~~~~~~~~~~~~~d~i~~ieit~NR~Dlls~~Gi 81 (592)
++|.++.+.+.+++|.+++.+++.+.|..+|++++... + .+.+.+|+.|+|+..-.=|
T Consensus 275 ~~i~l~~~~i~~~lG~~i~~~~i~~iL~~Lgf~~~~~~---------------------~-~~~v~vP~~R~DI~~~~Dl 332 (552)
T PRK09616 275 RTREVSVEYINKLLGIDLSAEEIIELLERMRYDAEIGD---------------------D-KVKVTVPPYRVDILHEVDV 332 (552)
T ss_pred eEEEecHHHHHHHhCCCCCHHHHHHHHHHcCCCcEecC---------------------C-eEEEEeCCCcccccccchH
Confidence 36999999999999999999999999999999984221 1 4889999999999999999
Q ss_pred HHHHHHhcCCCC
Q 007714 82 AQALRVFNKQQE 93 (592)
Q Consensus 82 ARel~a~~g~~~ 93 (592)
+-|++-++|-..
T Consensus 333 iEEiaR~yGyd~ 344 (552)
T PRK09616 333 IEDVAIAYGYNN 344 (552)
T ss_pred HHHHHHHhCccc
Confidence 999999988543
No 69
>PRK00629 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=94.10 E-value=0.12 Score=61.20 Aligned_cols=72 Identities=24% Similarity=0.383 Sum_probs=62.4
Q ss_pred CeEEechHHHHHHhCCCCCHHHHHHHhhhcCCcccccchhHHHHhhhccccccCCCCCCceEEEEecCCCcccccCHHHH
Q 007714 2 PTVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEVPANRYDLLCLEGI 81 (592)
Q Consensus 2 p~i~~~~~~l~~~~g~~~~~~e~~~~l~~~g~e~e~~~~~~~~~~~~~~~~~~~~~~~~d~i~~ieit~NR~Dlls~~Gi 81 (592)
++|.++.+.+.+++|.+++.+++.+.|..+|++++...+ ..+++.+|+.|+|+..-.=|
T Consensus 401 ~~I~~~~~~i~~ilG~~i~~~~i~~iL~~Lgf~~~~~~~---------------------~~~~V~vPs~R~DI~~~~Dl 459 (791)
T PRK00629 401 PTITLRLERINRLLGTEISDEEIVDILKRLGFEVTEVDG---------------------DGLTVTVPSWRFDIEIEEDL 459 (791)
T ss_pred eEEEecHHHHHHHhCCCCCHHHHHHHHHHCCCEEEecCC---------------------CeEEEECCCCccccCcccHH
Confidence 369999999999999999999999999999999953210 14899999999999999999
Q ss_pred HHHHHHhcCCCCC
Q 007714 82 AQALRVFNKQQEI 94 (592)
Q Consensus 82 ARel~a~~g~~~~ 94 (592)
+-|++-++|-..+
T Consensus 460 iEEI~RiyGyd~i 472 (791)
T PRK00629 460 VEEVARIYGYDNI 472 (791)
T ss_pred HHHHHHHhCcccC
Confidence 9999999985433
No 70
>TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family. The seryl-tRNA synthetases from a few of the Archaea, represented by this model, are very different from the set of mutually more closely related seryl-tRNA synthetases from Eubacteria, Eukaryotes, and other Archaea. Although distantly homologous, the present set differs enough not to be recognized by the pfam model tRNA-synt_2b that recognizes the remainder of seryl-tRNA synthetases among oither class II amino-acyl tRNA synthetases.
Probab=93.91 E-value=0.91 Score=50.39 Aligned_cols=145 Identities=15% Similarity=0.138 Sum_probs=88.5
Q ss_pred HHHHHHHHH-HHCCceEEeeccccChHHHHHHcCCCCCCCCce-eeC----------------------------CCcCC
Q 007714 398 FSDLMRLEI-AMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGN----------------------------PRTSD 447 (592)
Q Consensus 398 ~~~~lr~~l-~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v-i~N----------------------------P~s~e 447 (592)
+.+.+.+.+ ...||+|++...|++.+.....-..+.-..... +.. .+..+
T Consensus 229 L~~~~ld~~~~k~Gy~ev~fP~LIp~e~l~k~ghl~gF~~e~y~Vt~~~~d~d~~~~f~~~~~~~~eipi~~L~~~le~~ 308 (520)
T TIGR00415 229 LEEFFIEEIVKKIGFQECLFPKLIPLDIMNKMRYLEGLPEGMYYCCAPKRDPELFEEFKNELIIKKEIPIDKLKNGIKDP 308 (520)
T ss_pred HHHHHHHHHHHhcCCeEEeCCcEecHHHHcccCCCCCCchhheEEecCCCCcchhhccccccccccccccccccccccCC
Confidence 344443333 346999999999999886433211111011122 422 22333
Q ss_pred cccccccchHHHHHHHHhccC--CCCCeeEEE-eCcEeecCCCccccc---ccccEEEEEEeCCC----CCHHHHHHHHH
Q 007714 448 FEVVRTTLMPGILKTIGHNKD--HPKPIKIYE-VGDVVLLDEKKDVGA---SCRRRLAALYCGAN----SGFELIHCLVD 517 (592)
Q Consensus 448 ~~~lR~SLlpgLL~~~~~N~~--~~~~~~lFE-iG~V~~~~~~~~~~~---~~~~~l~~~~~g~~----~~f~~ikg~le 517 (592)
.-+||++--..+....+.-.. +..|+++|. .|.||+...+...|. ++..+.-++..+.. .-+..+.+..+
T Consensus 309 ~~vL~PTSE~ply~~~a~~Ils~~dLPlk~~~~s~~CFR~EaGstrGL~RvhEF~kvE~v~~~tpEea~e~~e~mle~~~ 388 (520)
T TIGR00415 309 GYVIAPAQCEPFYQFFEGEVIDAEDKPIKFFDRSGWTYRWEAGGAKGLDRVHEFLRVECVWIAEPEETEEIRDKTLELAE 388 (520)
T ss_pred ceEEeCccHHHHHHHHhccccChhhCCeeEEEEecCeEeCCCCCCCCCceeeEEEEEEEEEEeCHHHHHHHHHHHHHHHH
Confidence 556999988888877775442 346999999 558998765422222 23333333333321 23556778888
Q ss_pred HHHHHhCCCCCCCCCCccEEEEecCCCCccCCce
Q 007714 518 RIMEVIGTPFVPVGDDTGYYIQRSDEPEFLPGRQ 551 (592)
Q Consensus 518 ~ll~~lgi~~~~~~~~~~~~~~~~~~~~f~pgr~ 551 (592)
.+++.|+++ |++...++|+|..|++
T Consensus 389 ~~l~~L~Lp---------yrv~~adDPFf~~g~k 413 (520)
T TIGR00415 389 DAADELDLE---------WWTEVGDDPFYLEGRK 413 (520)
T ss_pred HHHHHcCCC---------eEEeecCCcccccccC
Confidence 999999998 7888878888887776
No 71
>PLN02678 seryl-tRNA synthetase
Probab=93.78 E-value=0.7 Score=50.91 Aligned_cols=127 Identities=11% Similarity=0.081 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCce-eeCCCcCCccccccc---chHHHHHHHHhccC--
Q 007714 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTT---LMPGILKTIGHNKD-- 468 (592)
Q Consensus 395 ~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v-i~NP~s~e~~~lR~S---LlpgLL~~~~~N~~-- 468 (592)
...+.+.+++.+...||+||.+..+++.+........+...++.. +.+. .++.-.+.|+ |.|... |..
T Consensus 177 ~~AL~~y~ld~~~~~Gy~~V~~P~lv~~~~~~~sG~~~~f~e~my~i~~~-~~~~yLi~TaE~~l~~~h~-----~~~~s 250 (448)
T PLN02678 177 NQALINFGLAFLRKRGYTPLQTPFFMRKDVMAKCAQLAQFDEELYKVTGE-GDDKYLIATSEQPLCAYHR-----GDWID 250 (448)
T ss_pred HHHHHHHHHHHHHHcCCEEEECcccccHHHHhhcCCcccchhcCceecCC-CCceeeecccccccChHHh-----cccCC
Confidence 445777788888899999999999999876443322222112334 6432 1243344543 444442 222
Q ss_pred -CCCCeeEEEeCcEeecCCCc----cccc---ccccEEEE-EEeCCC-----CCHHHHHHHHHHHHHHhCCCC
Q 007714 469 -HPKPIKIYEVGDVVLLDEKK----DVGA---SCRRRLAA-LYCGAN-----SGFELIHCLVDRIMEVIGTPF 527 (592)
Q Consensus 469 -~~~~~~lFEiG~V~~~~~~~----~~~~---~~~~~l~~-~~~g~~-----~~f~~ikg~le~ll~~lgi~~ 527 (592)
+..|+|++++|.+|+...++ ..|. ++...+-. .++... ..|+++.+..+.++..||+++
T Consensus 251 ~~eLPlr~~~~s~cfR~Eags~G~~~~GL~RvhqF~KvE~f~~~~pe~~~s~~~~e~~l~~~~~i~~~L~lpy 323 (448)
T PLN02678 251 PKELPIRYAGYSTCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNESWEMHEEMLKNSEDFYQSLGIPY 323 (448)
T ss_pred HHhCCceeEEeccccccccccCCCcCCcceEEEEEEEEEEEEEECCCchhHHHHHHHHHHHHHHHHHHcCCCe
Confidence 23699999999999876542 1222 22222222 233332 237788899999999999984
No 72
>PLN02265 probable phenylalanyl-tRNA synthetase beta chain
Probab=93.40 E-value=0.17 Score=57.94 Aligned_cols=71 Identities=18% Similarity=0.282 Sum_probs=60.9
Q ss_pred eEEechHHHHHHhCCCCCHHHHHHHhhhcCCcccccchhHHHHhhhccccccCCCCCCceEEEEecCCCcccccCHHHHH
Q 007714 3 TVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEVPANRYDLLCLEGIA 82 (592)
Q Consensus 3 ~i~~~~~~l~~~~g~~~~~~e~~~~l~~~g~e~e~~~~~~~~~~~~~~~~~~~~~~~~d~i~~ieit~NR~Dlls~~GiA 82 (592)
+|.++.+++.+++|.+++.+|+.++|..+|++++.... ++..+++.+|+.|.|++.-.=|+
T Consensus 311 ~i~~~~~~i~~~lG~~l~~~ei~~iL~~l~~~~~~~~~-------------------~~~~~~V~vP~~R~DI~~~~Dii 371 (597)
T PLN02265 311 TMEVDLSYINSSIGVSLDAEEVASLLNKMQLQAEQSSD-------------------DGCTIRVSVPPTRSDILHPCDVA 371 (597)
T ss_pred eEEeeHHHHHHHhCCCCCHHHHHHHHHHCCCCeEeccc-------------------CCCceEEEcCCccccccchhhhh
Confidence 58899999999999999999999999999999853210 01148999999999999999999
Q ss_pred HHHHHhcCCC
Q 007714 83 QALRVFNKQQ 92 (592)
Q Consensus 83 Rel~a~~g~~ 92 (592)
-|++..+|-.
T Consensus 372 EEVar~yGyd 381 (597)
T PLN02265 372 EDVAIAYGYN 381 (597)
T ss_pred hhhHheeccc
Confidence 9999998853
No 73
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly
Probab=92.80 E-value=0.56 Score=47.76 Aligned_cols=125 Identities=8% Similarity=0.010 Sum_probs=79.5
Q ss_pred ChHHHHHHHHHHHHHHCC--ceEEeeccccChHHHHHHcCCCCCCCCceeeCCCcCCcccccccchHHHHHHHHhccC--
Q 007714 393 LALNEFSDLMRLEIAMNG--FTEVLTWILCSSKEISTMLNRQTDESTAVVGNPRTSDFEVVRTTLMPGILKTIGHNKD-- 468 (592)
Q Consensus 393 ~~~~~~~~~lr~~l~~~G--f~Ev~t~sl~s~~~~~~~~~~~~~~~~~vi~NP~s~e~~~lR~SLlpgLL~~~~~N~~-- 468 (592)
.-.+++.+.+|+.+...| |+|+.|..+.+..- |... . . -.+. ..+.-+||+.+.|+.+-.+++...
T Consensus 33 ~l~~~i~~~~~~~~~~~g~~~~~i~tP~i~~~~m-f~~~-~-g------~~d~-~~~~~~Lrp~~~~~~~~~~~~~~~~~ 102 (254)
T cd00774 33 ELKNNIKSAWRKSFVLEEEDMLEIDSPIITPELM-FKTS-I-G------PVES-GGNLGYLRPETAQGIFVNFKNLLEFN 102 (254)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEeccccCCHHH-heee-e-c------ccCC-CCcccccCCcccchHHHHHHHHHHHh
Confidence 345678899999999885 99999999999842 2210 0 0 0000 123458999999876655544332
Q ss_pred -CCCCeeEEEeCcEeecCCCccc---ccccccEEEEEEeCC----CCCHHHHHHHHHHHHHHhCCCC
Q 007714 469 -HPKPIKIYEVGDVVLLDEKKDV---GASCRRRLAALYCGA----NSGFELIHCLVDRIMEVIGTPF 527 (592)
Q Consensus 469 -~~~~~~lFEiG~V~~~~~~~~~---~~~~~~~l~~~~~g~----~~~f~~ikg~le~ll~~lgi~~ 527 (592)
+..|+++++||+||+.+.+... ..++..+..+-+-+. ...|.........++..+|++.
T Consensus 103 ~~~lP~~~~qig~~fR~E~~~~~gl~R~ReF~q~d~~~f~~~~~~~e~~~~v~~~~~~~l~~~G~~~ 169 (254)
T cd00774 103 RRKLPFGVAQIGKSFRNEISPRNGLFRVREFTQAEIEFFVDPEKSHPWFDYWADQRLKWLPKFAQSP 169 (254)
T ss_pred CCCCCchhhhhchhhccccCcccceeeeccchhhheeeeECCCCchHHHHHHHHHHHHHHHHcCCCc
Confidence 3679999999999986542211 224443333322222 1237778888888999999853
No 74
>TIGR00472 pheT_bact phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from Bacteria other than spirochetes, as well as a chloroplast-encoded form from Porphyra purpurea. The chloroplast-derived sequence is considerably shorter at the amino end, however.
Probab=92.62 E-value=0.27 Score=58.38 Aligned_cols=69 Identities=20% Similarity=0.333 Sum_probs=61.2
Q ss_pred CeEEechHHHHHHhCCCCCHHHHHHHhhhcCCcccccchhHHHHhhhccccccCCCCCCceEEEEecCCCcccccCHHHH
Q 007714 2 PTVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEVPANRYDLLCLEGI 81 (592)
Q Consensus 2 p~i~~~~~~l~~~~g~~~~~~e~~~~l~~~g~e~e~~~~~~~~~~~~~~~~~~~~~~~~d~i~~ieit~NR~Dlls~~Gi 81 (592)
.+|.++.+.+.+++|.+++.+|+.+.|..+|++++... + .+++.+|+.|.|+..-.=|
T Consensus 406 ~~i~~~~~~i~~~lG~~i~~~ei~~iL~~Lgf~~~~~~---------------------~-~~~V~vP~~R~DI~~~~Dl 463 (798)
T TIGR00472 406 KKISLRIKKLNKILGISLSDEEVRDILKRLGFKVEKQK---------------------D-GWEVTVPSYRHDITIEEDL 463 (798)
T ss_pred eEEEecHHHHHHHhCCccCHHHHHHHHHHCCCEEEecC---------------------C-eEEEECCCCccccccchhh
Confidence 36899999999999999999999999999999995211 1 3889999999999999999
Q ss_pred HHHHHHhcCCC
Q 007714 82 AQALRVFNKQQ 92 (592)
Q Consensus 82 ARel~a~~g~~ 92 (592)
+-|++-++|-.
T Consensus 464 iEEI~R~yGyd 474 (798)
T TIGR00472 464 IEEIARIYGYD 474 (798)
T ss_pred HhhhhhhhCcc
Confidence 99999998853
No 75
>PRK09350 poxB regulator PoxA; Provisional
Probab=92.59 E-value=0.47 Score=49.71 Aligned_cols=112 Identities=13% Similarity=0.033 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCce-e--eCC--CcCCcccccccchHHHHHHHHhccCCC
Q 007714 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-V--GNP--RTSDFEVVRTTLMPGILKTIGHNKDHP 470 (592)
Q Consensus 396 ~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v-i--~NP--~s~e~~~lR~SLlpgLL~~~~~N~~~~ 470 (592)
..+.+.+|+.|...||.||.|..|..... ... ...++ + .-| -.....+||+|-=-.+=+.++..
T Consensus 9 ~~i~~~ir~~f~~~gf~EV~TP~l~~~~~-~~~------~~~~f~~~y~~~~~~~~~~~~L~~SPe~~~kr~la~~---- 77 (306)
T PRK09350 9 AKIIAEIRRFFADRGVLEVETPILSQATV-TDI------HLVPFETRFVGPGASQGKTLWLMTSPEYHMKRLLAAG---- 77 (306)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEecccC-CCc------cCCceeeeeccccccCCcceEEecCHHHHHHHHhhcc----
Confidence 46788999999999999999999974221 000 00111 1 111 01233478876433322234322
Q ss_pred CCeeEEEeCcEeecCCCcccccccccEEEEEEeCCCCCHHHHHHHHHHHHH
Q 007714 471 KPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIME 521 (592)
Q Consensus 471 ~~~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~g~~~~f~~ikg~le~ll~ 521 (592)
. -|+|++|+||+..+.+..+..|.+++-+-.++ .++.++-..++.++.
T Consensus 78 ~-~rvf~i~~~FR~e~~~~~H~~EFt~lE~y~~~--~d~~dlm~~~E~li~ 125 (306)
T PRK09350 78 S-GPIFQICKSFRNEEAGRYHNPEFTMLEWYRPH--YDMYRLMNEVDDLLQ 125 (306)
T ss_pred c-cceEEecceeecCCCCCCCCcHHHhhhhhhhC--CCHHHHHHHHHHHHH
Confidence 2 39999999998765533344444454432222 356665555555543
No 76
>PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=92.50 E-value=1.3 Score=45.70 Aligned_cols=120 Identities=9% Similarity=0.014 Sum_probs=77.1
Q ss_pred hHHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCce-eeCCCcCCcccccccchHHHHHHHHhccCCCCC
Q 007714 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKP 472 (592)
Q Consensus 394 ~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v-i~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~ 472 (592)
...++++++++.+...||.|+.|.+|-..+. +. ........... ...+.+-+.-+||+-+.|++.+.++.+. ..+
T Consensus 9 ~~~~ie~~l~~~f~~~GY~~I~tP~~E~~d~-~~-~~~~~~~~~~~~~~~~~~Gr~laLRpD~T~~iAR~~a~~~--~~~ 84 (272)
T PRK12294 9 ALKESETAFLKYFNKADYELVDFSVIEKLDW-KQ-LNHEDLQQMGERSFWQHEHQIYALRNDFTDQLLRYYSMYP--TAA 84 (272)
T ss_pred HHHHHHHHHHHHHHHcCCeEeeCCcchhHHh-hh-ccccchhhhheeeeecCCCCEEEEcCCCCHHHHHHHHhcC--CCC
Confidence 3457889999999999999999999965543 11 11101011233 3444677888999999999999988653 235
Q ss_pred eeEEEeCcEeecCCCcccccccccEEEEEEeC--CCCCHHHHHHHHHHHHHHhCC
Q 007714 473 IKIYEVGDVVLLDEKKDVGASCRRRLAALYCG--ANSGFELIHCLVDRIMEVIGT 525 (592)
Q Consensus 473 ~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~g--~~~~f~~ikg~le~ll~~lgi 525 (592)
.|+|-+|+||+.+. +..++++=+.| ..++.+++.=.+ ..+..+|.
T Consensus 85 ~Rl~Y~g~VfR~~~-------~~~Q~GvEliG~~~~a~~e~l~la~-~~l~~~g~ 131 (272)
T PRK12294 85 TKVAYAGLIIRNNE-------AAVQVGIENYAPSLANVQQSFKLFI-QFIQQQLR 131 (272)
T ss_pred ceEEEeccEeccCC-------CcceeceEEECCCchhHHHHHHHHH-HHHHHhCC
Confidence 79999999997542 23444443445 345555553333 33444533
No 77
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=92.46 E-value=1.4 Score=48.29 Aligned_cols=129 Identities=12% Similarity=0.130 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCce-eeCCCcCCcccccccchHHHHHHHHhccC--CCC
Q 007714 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKD--HPK 471 (592)
Q Consensus 395 ~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v-i~NP~s~e~~~lR~SLlpgLL~~~~~N~~--~~~ 471 (592)
...+.+-+++.+...||+|+.+..|++.+........+...++.. |.+ +--+||++==+.+....+.... +..
T Consensus 176 ~~aL~~~~~~~~~~~G~~~v~~P~lv~~~~~~~~G~~~~f~~~~y~i~~----~~~~L~pTsE~~~~~~~~~~i~s~~~L 251 (418)
T TIGR00414 176 ERALINFMLDLLEKNGYQEIYPPYLVNEESLDGTGQLPKFEEDIFKLED----TDLYLIPTAEVPLTNLHRNEILEEEEL 251 (418)
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCccccccccceEecC----CCEEEEeCCcHHHHHHHhCcCCChHhC
Confidence 456777788999999999999999999886433322221112334 643 3347888865566555444433 246
Q ss_pred CeeEEEeCcEeecCCCc---c-ccc---ccccEEEE-EEeCC---CCCHHHHHHHHHHHHHHhCCCC
Q 007714 472 PIKIYEVGDVVLLDEKK---D-VGA---SCRRRLAA-LYCGA---NSGFELIHCLVDRIMEVIGTPF 527 (592)
Q Consensus 472 ~~~lFEiG~V~~~~~~~---~-~~~---~~~~~l~~-~~~g~---~~~f~~ikg~le~ll~~lgi~~ 527 (592)
|+++|++|.+|+...+. + .|. ++..+.-+ +++.. ...|..+....+.+++.||+++
T Consensus 252 Plr~~~~s~~FR~E~g~~G~~t~GL~Rv~qF~k~E~~~f~~~e~s~~~~~~~~~~~~~i~~~Lglp~ 318 (418)
T TIGR00414 252 PIKYTAHSPCFRSEAGSYGKDTKGLIRVHQFNKVELVKFCKPEESAEELEEMTSDAEQILQELELPY 318 (418)
T ss_pred CeeEEEEcccccCCCCccCCCCCccccccceeeeeEEEEcCHHHHHHHHHHHHHHHHHHHHHcCCce
Confidence 99999999999765421 1 121 23222222 22322 2347888899999999999984
No 78
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....
Probab=92.45 E-value=1.1 Score=47.41 Aligned_cols=111 Identities=14% Similarity=0.119 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCce-ee---CCCcCCcccccccchHHHHHHHHhccCCCC
Q 007714 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VG---NPRTSDFEVVRTTLMPGILKTIGHNKDHPK 471 (592)
Q Consensus 396 ~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v-i~---NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~ 471 (592)
..+.+.+|+.|...||.||-|..+++... .++.+.. +. +.....--.|++|----+=..++...
T Consensus 26 s~i~~~ir~ff~~~~f~Ev~tP~l~~~~~--------~~~~~~F~v~~~~~~~~~~~~~L~~Spql~~k~ll~~g~---- 93 (335)
T PF00152_consen 26 SAILQAIREFFDKRGFIEVDTPILTSSTC--------EGGAEPFSVDSEPGKYFGEPAYLTQSPQLYLKRLLAAGL---- 93 (335)
T ss_dssp HHHHHHHHHHHHHTT-EEE---SEESSSS--------SSSSCSEEEEESTTEETTEEEEE-SSSHHHHHHHHHTTH----
T ss_pred HHHHHHHHHHHHhCCceEEcCceeecccc--------CccccccccccchhhhcccceecCcChHHHHhhhccccc----
Confidence 35678999999999999999999998642 1112344 55 22223345688887665544554432
Q ss_pred CeeEEEeCcEeecCCC-cccccccccEEEEEEeCCCCCHHHHHHHHHHHHH
Q 007714 472 PIKIYEVGDVVLLDEK-KDVGASCRRRLAALYCGANSGFELIHCLVDRIME 521 (592)
Q Consensus 472 ~~~lFEiG~V~~~~~~-~~~~~~~~~~l~~~~~g~~~~f~~ikg~le~ll~ 521 (592)
-++||||.+|+.++. +..+..|.++|-+-.++ +++.++-..++.++.
T Consensus 94 -~~vf~i~~~FR~E~~~~~rHl~EFtmLE~e~a~--~~~~~lm~~~e~li~ 141 (335)
T PF00152_consen 94 -ERVFEIGPCFRNEESRTRRHLPEFTMLEWEMAF--ADYDDLMDLIEELIK 141 (335)
T ss_dssp -SEEEEEEEEE-BSSSCBTTBSSEEEEEEEEEET--SSHHHHHHHHHHHHH
T ss_pred -hhhhheecceeccCcccccchhhhhhhhhcccc--CcHHHhHHHHHHHHH
Confidence 579999999987765 44455566777765555 466666555555543
No 79
>CHL00192 syfB phenylalanyl-tRNA synthetase beta chain; Provisional
Probab=92.04 E-value=0.4 Score=55.99 Aligned_cols=72 Identities=8% Similarity=0.179 Sum_probs=61.1
Q ss_pred CeEEechHHHHHHhCC-----C---CCHHHHHHHhhhcCCcccccchhHHHHhhhccccccCCCCCCceEEEEecCCCcc
Q 007714 2 PTVSVGRDRLFAALGK-----S---YTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEVPANRY 73 (592)
Q Consensus 2 p~i~~~~~~l~~~~g~-----~---~~~~e~~~~l~~~g~e~e~~~~~~~~~~~~~~~~~~~~~~~~d~i~~ieit~NR~ 73 (592)
++|.++.+++.+++|. + ++.+++.+.|..+|++++... ++..+++.+|+.|+
T Consensus 303 ~~I~l~~~~i~~iLG~~~~~~~~~~i~~~ei~~iL~~Lgf~v~~~~--------------------~~~~~~V~vP~~R~ 362 (704)
T CHL00192 303 RRIKLSYKKIKDILGPIKINTNTRYLSPKEITNALKRLNFKITYDS--------------------LKLNWEVLIPSYRK 362 (704)
T ss_pred eeEEeCHHHHHHhcCCCcccCccccCCHHHHHHHHHHCCCEEEecC--------------------CCceEEEEcCCCCc
Confidence 4699999999999997 7 999999999999999984210 11138899999998
Q ss_pred -cccCHHHHHHHHHHhcCCCC
Q 007714 74 -DLLCLEGIAQALRVFNKQQE 93 (592)
Q Consensus 74 -Dlls~~GiARel~a~~g~~~ 93 (592)
|+..-.=|+-|++-++|-..
T Consensus 363 ~DI~~~~DliEEIaRiyGYdn 383 (704)
T CHL00192 363 DDIVREIDVIEEIARIYGFNN 383 (704)
T ss_pred hhcCchhHHHHHHHHhcCccc
Confidence 99999999999999998543
No 80
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=91.40 E-value=2 Score=47.12 Aligned_cols=129 Identities=12% Similarity=0.091 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHH-HCCceEEeeccccChHHHHHHcCCCCCCCCce-eeCCCcCCcccccccchHHHHHHHHhccC--CC
Q 007714 395 LNEFSDLMRLEIA-MNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKD--HP 470 (592)
Q Consensus 395 ~~~~~~~lr~~l~-~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v-i~NP~s~e~~~lR~SLlpgLL~~~~~N~~--~~ 470 (592)
.+.+.+.+++.+. ..||+|+.+..|++.+........+...++.. |.+ +.-+||++-=+.+....+.... +.
T Consensus 173 ~~aL~~~~~~~~~~~~G~~ev~~P~lv~~~~~~~~G~~~~f~~~ly~i~~----~~~~L~pTsE~~l~~l~~~~~~s~~d 248 (425)
T PRK05431 173 ERALIQFMLDLHTEEHGYTEVIPPYLVNEESMYGTGQLPKFEEDLYKIED----DDLYLIPTAEVPLTNLHRDEILDEEE 248 (425)
T ss_pred HHHHHHHHHHHHHHhcCCEEEeccccccHHHHhhcCccccchhhceEecC----CCEEEEeCCcHHHHHHHhcccCCHHh
Confidence 4456677777788 89999999999999886433322222122344 653 3457888887777655554433 24
Q ss_pred CCeeEEEeCcEeecCCCc---c-ccc---ccccEEEE-EEeCC---CCCHHHHHHHHHHHHHHhCCCC
Q 007714 471 KPIKIYEVGDVVLLDEKK---D-VGA---SCRRRLAA-LYCGA---NSGFELIHCLVDRIMEVIGTPF 527 (592)
Q Consensus 471 ~~~~lFEiG~V~~~~~~~---~-~~~---~~~~~l~~-~~~g~---~~~f~~ikg~le~ll~~lgi~~ 527 (592)
.|++++++|.+|+...+. + .|. ++..+.-+ +++.. ...|..+....+.++..||+++
T Consensus 249 LPlr~~~~s~~fR~Eag~~g~~~~GL~Rv~qF~k~E~~~f~~~e~s~~~~~~~l~~~~~i~~~Lglpy 316 (425)
T PRK05431 249 LPLKYTAYSPCFRSEAGSAGRDTRGLIRVHQFDKVELVKFTKPEDSYAELEELTANAEEILQKLELPY 316 (425)
T ss_pred CCeeEEEEcCEecCCCCcCCCCCCceeeeeeeeeeeEEEEECHHHHHHHHHHHHHHHHHHHHHcCCcE
Confidence 699999999999765432 1 121 22222222 22322 2358889999999999999984
No 81
>PRK06462 asparagine synthetase A; Reviewed
Probab=91.29 E-value=1.5 Score=46.63 Aligned_cols=116 Identities=13% Similarity=0.083 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCc-eeeCCCcCCcccccccchHHHHHHHHhccCCCCCee
Q 007714 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTA-VVGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIK 474 (592)
Q Consensus 396 ~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~-vi~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~~~ 474 (592)
..+.+.+|+.|...||.||-|..+++..+ ..+....+ ... +.....-.....|++|.--- ++.+... --|
T Consensus 34 s~i~~~iR~ff~~~~f~EV~TP~l~~~~~--~~~~~g~~-~~~~~~~~~~~~~~~yL~~Spql~-k~ll~~g-----~~r 104 (335)
T PRK06462 34 SSILRYTREFLDGRGFVEVLPPIISPSTD--PLMGLGSD-LPVKQISIDFYGVEYYLADSMILH-KQLALRM-----LGK 104 (335)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeEecCCC--CCCCcccc-CCccccccccCCCceeeccCHHHH-HHHHHhh-----cCc
Confidence 45778899999999999999999986521 11110000 001 11111112345788875333 5555432 157
Q ss_pred EEEeCcEeecCCCcc---cccccccEEEEEEeCCCCCHHHHHHHHHHHHHH
Q 007714 475 IYEVGDVVLLDEKKD---VGASCRRRLAALYCGANSGFELIHCLVDRIMEV 522 (592)
Q Consensus 475 lFEiG~V~~~~~~~~---~~~~~~~~l~~~~~g~~~~f~~ikg~le~ll~~ 522 (592)
+||||++|+.++... .+..|.+++-+=.++ .++.++...++.++..
T Consensus 105 VfeI~p~FR~E~~~~~~~rHl~EFtmlE~e~~~--~d~~dlm~~~e~lv~~ 153 (335)
T PRK06462 105 IFYLSPNFRLEPVDKDTGRHLYEFTQLDIEIEG--ADLDEVMDLIEDLIKY 153 (335)
T ss_pred EEEEeccccCCCCCCCCCCCCCchheeeehhhc--CCHHHHHHHHHHHHHH
Confidence 999999998765433 444455666653344 4788888777776653
No 82
>PRK08661 prolyl-tRNA synthetase; Provisional
Probab=90.78 E-value=3.4 Score=46.07 Aligned_cols=133 Identities=9% Similarity=-0.001 Sum_probs=81.7
Q ss_pred ChHHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCC-CCCce-eeCCC---cCCcccccccchHHHHHHHHhcc
Q 007714 393 LALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTD-ESTAV-VGNPR---TSDFEVVRTTLMPGILKTIGHNK 467 (592)
Q Consensus 393 ~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~-~~~~v-i~NP~---s~e~~~lR~SLlpgLL~~~~~N~ 467 (592)
.-.+.+.+.+++.+...||+|+.+..|.+.+.....-+.... .++.. +..-- ..+.-+||++.-+++....+.-.
T Consensus 45 ~i~~~i~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~~~v~~~~~~~~~e~l~LrPtsE~~i~~~~~~~i 124 (477)
T PRK08661 45 AIWENIQKILDKLFKETGHENVYFPLLIPESLLEKEKEHVEGFAPEVAWVTHGGGEKLEEKLALRPTSETIIYPMYKKWI 124 (477)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhhcCchhhcccccEEEEccCCCccCceEEEecCCcHHHHHHHHhhh
Confidence 345678888999999999999999999988752111111100 12333 54321 13456899999888877766654
Q ss_pred C--CCCCeeEEEeCcEeecCCCccccc---ccccEEEE--EEeCC---CCCHHHHHHHHHHHH-HHhCCC
Q 007714 468 D--HPKPIKIYEVGDVVLLDEKKDVGA---SCRRRLAA--LYCGA---NSGFELIHCLVDRIM-EVIGTP 526 (592)
Q Consensus 468 ~--~~~~~~lFEiG~V~~~~~~~~~~~---~~~~~l~~--~~~g~---~~~f~~ikg~le~ll-~~lgi~ 526 (592)
+ +.+|++++++|.||+.... ..|. ++....-+ +.+.. ...+..+......++ +.||++
T Consensus 125 ~SyrdLPlrl~q~~~vfR~E~~-~rgl~R~rEF~~~E~h~~~~~~eea~~e~~~~l~~y~~i~~~~Lglp 193 (477)
T PRK08661 125 QSYRDLPLLYNQWVNVVRWETK-TRPFLRTREFLWQEGHTAHATEEEAEEETLEMLEIYKEFFEDYLAIP 193 (477)
T ss_pred cchhhcCHHHhcccceeeCCCC-CCCcceeeeEEEcceeeeeCCHHHHHHHHHHHHHHHHHHHHHhcCCe
Confidence 3 4579999999999986543 2221 11111110 01111 123556677778888 889987
No 83
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=89.82 E-value=3.4 Score=42.76 Aligned_cols=112 Identities=12% Similarity=0.049 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCceeeCCC-cCCcccccccchHHHHHHHHhccCCCCCe
Q 007714 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAVVGNPR-TSDFEVVRTTLMPGILKTIGHNKDHPKPI 473 (592)
Q Consensus 395 ~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~vi~NP~-s~e~~~lR~SLlpgLL~~~~~N~~~~~~~ 473 (592)
..++.+.+|+.|...||.||-|..|+.... . + .....+.... ..+.-.||+|----+=..++.- --
T Consensus 4 Rs~i~~~iR~f~~~~gfiEV~TP~L~~~~~--~--g----~~~f~~~~~~~~~~~~~L~~Spql~lk~ll~~g-----~~ 70 (280)
T cd00777 4 RSRVIKAIRNFLDEQGFVEIETPILTKSTP--E--G----ARDFLVPSRLHPGKFYALPQSPQLFKQLLMVSG-----FD 70 (280)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCeeecCCC--C--C----CCCceeccccCCCceeecccCHHHHHHHHHhcC-----cC
Confidence 346788999999999999999999985331 0 0 0111121111 1222237776433221122221 16
Q ss_pred eEEEeCcEeecCCCcccccccccEEEEEEeCCCCCHHHHHHHHHHHHH
Q 007714 474 KIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIME 521 (592)
Q Consensus 474 ~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~g~~~~f~~ikg~le~ll~ 521 (592)
|+|+||+||+.+........|.+++.+=.++. ++.++...++.++.
T Consensus 71 ~v~~i~~~fR~e~~~~~r~~Ef~~~e~e~~~~--~~~dlm~~~e~li~ 116 (280)
T cd00777 71 RYFQIARCFRDEDLRADRQPEFTQIDIEMSFV--DQEDIMSLIEGLLK 116 (280)
T ss_pred cEEEeccceeCCCCCCCccceeEEeEeeeccC--CHHHHHHHHHHHHH
Confidence 89999999987654322334555665544443 78888888877765
No 84
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=89.73 E-value=3.3 Score=43.90 Aligned_cols=110 Identities=12% Similarity=0.040 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCce-eeCCCcCCcccccccchHHHH-HHH-HhccCCCCC
Q 007714 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGIL-KTI-GHNKDHPKP 472 (592)
Q Consensus 396 ~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v-i~NP~s~e~~~lR~SLlpgLL-~~~-~~N~~~~~~ 472 (592)
..+.+.+|+.|...||.||-|..|++.... . ..... +.+.-......|++|- .|. +.+ +.. -
T Consensus 12 s~i~~~iR~ff~~~gf~EV~TP~L~~~~~~-------~-~~~~f~~~~~~~~~~~yL~~Sp--ql~~k~ll~~g-----~ 76 (329)
T cd00775 12 SKIISYIRKFLDDRGFLEVETPMLQPIAGG-------A-AARPFITHHNALDMDLYLRIAP--ELYLKRLIVGG-----F 76 (329)
T ss_pred HHHHHHHHHHHHHCCCEEEECCccccCCCC-------c-cceeEEeccCCCCcceeeccCH--HHHHHHHHhcC-----C
Confidence 457789999999999999999999765310 0 01122 2111223445687774 333 333 221 2
Q ss_pred eeEEEeCcEeecCCCcccccccccEEEEEEeCCCCCHHHHHHHHHHHHHH
Q 007714 473 IKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEV 522 (592)
Q Consensus 473 ~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~g~~~~f~~ikg~le~ll~~ 522 (592)
-++|+||.||+.++.+..+..|.+++-+=.++ .++.++...++.++..
T Consensus 77 ~~vf~i~~~FR~E~~~~rHl~EFt~le~e~~~--~~~~~~m~~~e~li~~ 124 (329)
T cd00775 77 ERVYEIGRNFRNEGIDLTHNPEFTMIEFYEAY--ADYNDMMDLTEDLFSG 124 (329)
T ss_pred CcEEEEeccccCCCCCCCCCCceEEEEEeeec--CCHHHHHHHHHHHHHH
Confidence 68999999998766543444555666543344 4888888888777753
No 85
>PTZ00417 lysine-tRNA ligase; Provisional
Probab=89.59 E-value=2.1 Score=48.85 Aligned_cols=111 Identities=15% Similarity=0.092 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCce--eeCCCcCCcccccccchHHHHHHHHhccCCCCCe
Q 007714 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV--VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPI 473 (592)
Q Consensus 396 ~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v--i~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~~ 473 (592)
.++.+.+|+.|...||.||-|..|.+..- + ....++ =.|.+..++ +||+|-=-- |+.+.- .+. -
T Consensus 257 S~Ii~aiR~Ff~~rGFlEVeTPiL~~~~G-----G---A~a~PF~T~~n~~d~~l-YLriSpEL~-lKrLlv---gG~-~ 322 (585)
T PTZ00417 257 TKIINYLRNFLNDRGFIEVETPTMNLVAG-----G---ANARPFITHHNDLDLDL-YLRIATELP-LKMLIV---GGI-D 322 (585)
T ss_pred HHHHHHHHHHHHHCCeEEEeCCeeeccCC-----c---ccceeEEecccCCCcce-EEeecHHHH-HHHHHH---hCC-C
Confidence 45778899999999999999999987521 0 001122 235444443 788774333 333321 112 5
Q ss_pred eEEEeCcEeecCCCcccccccccEEEEEEeCCCCCHHHHHHHHHHHHHH
Q 007714 474 KIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEV 522 (592)
Q Consensus 474 ~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~g~~~~f~~ikg~le~ll~~ 522 (592)
|+||||++|+.++.+.++..|.+++-+-.+. +++.++-..++.++..
T Consensus 323 rVfeIgp~FRnE~~~~rHnpEFTmlE~y~ay--~dy~dlM~l~E~Li~~ 369 (585)
T PTZ00417 323 KVYEIGKVFRNEGIDNTHNPEFTSCEFYWAY--ADFYDLIKWSEDFFSQ 369 (585)
T ss_pred CEEEEcccccCCCCCCCccceeeeeeeeeec--CCHHHHHHHHHHHHHH
Confidence 8999999998766443444455666554444 4899988777777653
No 86
>smart00873 B3_4 B3/4 domain. This domain is found in tRNA synthetase beta subunits as well as in some non tRNA synthetase proteins.
Probab=88.70 E-value=0.19 Score=47.56 Aligned_cols=80 Identities=21% Similarity=0.309 Sum_probs=53.5
Q ss_pred EEeeeeeccccCCC-eEEEecCCCceEEEeCCCcc-cCChhHHHhhhccccccccccccccCCCceeEEEeCCC------
Q 007714 159 VAIGTHDLDTLQGP-FTYEALPPSHINFVPLKQTR-DFTADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNR------ 230 (592)
Q Consensus 159 VdIgn~Dld~i~~p-~~y~~~~~~~i~f~~L~~~~-~~~~~el~~l~~~~~~l~~y~~i~~~~~~~~vI~D~~~------ 230 (592)
+-++.||+|++.+. +..+....++ .|.++++.+ .+....+. + .+....+.|+|..|
T Consensus 50 ~p~~~~D~d~i~~~~l~l~~~~~~e-~~~~l~~~~~~~~~~~~v--------i-------~d~~~~~~i~g~~g~~~~~~ 113 (174)
T smart00873 50 QPLHAFDLDKIKGKDIPLRRAKEGE-TFETLDGKEYELDEGDLV--------I-------ADDEGPLALAGVMGGEESEV 113 (174)
T ss_pred CCCeeEcHHHcCCCeEEEEECCCCC-EEEecCCcEEecCCCCEE--------E-------EeCCcCEEEEEEecCCccee
Confidence 55778999999876 6666665544 689998633 22211111 1 11222356666655
Q ss_pred ----CeeecCCcccCCcc-eeecCCeEEE
Q 007714 231 ----TVLSLPPIINGAHS-AITLKTKNVF 254 (592)
Q Consensus 231 ----~vlslagIigg~~s-~It~~T~nI~ 254 (592)
+.++++|+.++..+ +++..|++++
T Consensus 114 ~~~t~~i~~~~~~~~~~~i~~~~~~~~i~ 142 (174)
T smart00873 114 TENTTNIFLEPAIFSPRTIRITARTLNLF 142 (174)
T ss_pred cCCCCEEEEEEEEeCcHHHHHHHHHcCCc
Confidence 38999999999999 9999999875
No 87
>PRK03991 threonyl-tRNA synthetase; Validated
Probab=87.41 E-value=2.3 Score=48.94 Aligned_cols=132 Identities=16% Similarity=0.114 Sum_probs=80.7
Q ss_pred ChHHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCce-eeCCCcCCcccccccchHHHHHHHHhccC--C
Q 007714 393 LALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKD--H 469 (592)
Q Consensus 393 ~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v-i~NP~s~e~~~lR~SLlpgLL~~~~~N~~--~ 469 (592)
.-.+.+.+-+++.+...||+||.|..+.+............-..+.. +.. ..+.-+||++--|++....+...+ +
T Consensus 228 ~i~~~L~~~~~~~~~~~G~~~V~tP~~~~~~~~~~sgh~~~f~e~my~v~~--~~e~l~Lrp~~c~~~~~~~~~~~~Syr 305 (613)
T PRK03991 228 LIRDLLEDYVYNLVVELGAMPVETPIMYDLSHPAIREHADKFGERQYRVKS--DKKDLMLRFAACFGQFLMLKDMTISYK 305 (613)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEECCeecChhHHhhcccccccchhceEecC--CCceEEEecCCCHHHHHHHhCCcCchh
Confidence 34456788899999999999999999977653222211111112333 532 234568999999999877776554 3
Q ss_pred CCCeeEEEeCc-EeecCCCcc-ccc---ccccEEEE-EEeCC----CCCHHHHHHHHHHHHHHhCCC
Q 007714 470 PKPIKIYEVGD-VVLLDEKKD-VGA---SCRRRLAA-LYCGA----NSGFELIHCLVDRIMEVIGTP 526 (592)
Q Consensus 470 ~~~~~lFEiG~-V~~~~~~~~-~~~---~~~~~l~~-~~~g~----~~~f~~ikg~le~ll~~lgi~ 526 (592)
..|++++|+|+ +|+.....+ .|. ++...--+ +++-. ...|..+......++..||++
T Consensus 306 dLPlr~~e~~~~~fR~E~~g~l~GL~RvReF~~~D~h~f~~~~eqa~~e~~~~l~~~~~i~~~lGl~ 372 (613)
T PRK03991 306 NLPLKMYELSTYSFRLEQRGELVGLKRLRAFTMPDMHTLCKDMEQAMEEFEKQYEMILETGEDLGRD 372 (613)
T ss_pred hCChhhheecchheeCCCCCCCcCcccccceEeeeEEEEECCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 46999999999 998665432 222 22221111 12221 123555666666677777776
No 88
>PLN02837 threonine-tRNA ligase
Probab=87.40 E-value=2.3 Score=48.98 Aligned_cols=186 Identities=13% Similarity=0.130 Sum_probs=105.6
Q ss_pred HHhhccCCcC-CHHHHHHHHHhcCCeEEEcCCCCCcceEEEEcCCCCcccCCCchhHhHHHHHhCCCCCCC-CCCCCC--
Q 007714 315 YINHTIGVSL-EAEEVTSLLNRMQLHAERSASGNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYGYNNIPK-RKPASV-- 390 (592)
Q Consensus 315 ~i~~~LG~~l-~~~~i~~~L~~lg~~~~~~~~~~~~~~~~V~vP~~R~DI~~~~DliEEIar~yGydni~~-~~p~~~-- 390 (592)
.+.|+.|+.. +.++..+.|+++. .+... +. -+|++-.+.=.+.. .-|...
T Consensus 189 ~l~ri~g~~~~~~~~l~~~~~~~~-e~~~r----dH---------------------~~lg~~l~lf~~~~~~g~G~~~~ 242 (614)
T PLN02837 189 MLQRIYGTAWESEEQLKAYLHFKE-EAKRR----DH---------------------RRLGQDLDLFSIQDDAGGGLVFW 242 (614)
T ss_pred ceEEEEEEecCCHHHHHHHHHHHH-HhhhC----CH---------------------HHHHHHcCCcccCcCcCCcceEE
Confidence 4677888877 5688888888865 11110 12 12333322222221 112211
Q ss_pred ---CCChHHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCce-eeCCCcCCcccccccchHHHHHHHHhc
Q 007714 391 ---KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHN 466 (592)
Q Consensus 391 ---~~~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v-i~NP~s~e~~~lR~SLlpgLL~~~~~N 466 (592)
...-.+.+.+-+++.....||+||.|..+.+.+........+...++.. +.+ +..+.=+|||+=.|......+.-
T Consensus 243 ~p~G~~l~~~L~~~~~~~~~~~G~~~v~tP~l~~~~l~~~sGh~~~~~~~mf~~~~-~~~~~y~l~p~~~p~~~~~~~~~ 321 (614)
T PLN02837 243 HPKGAIVRHIIEDSWKKMHFEHGYDLLYTPHVAKADLWKTSGHLDFYKENMYDQMD-IEDELYQLRPMNCPYHILVYKRK 321 (614)
T ss_pred echHHHHHHHHHHHHHHHHHHCCCEEEECCccCCHHHHhhcCCcccchhhcccccC-CCCceEEECCCCcHHHHHHHhCc
Confidence 3334567788889989999999999999999875332221111112223 322 22344489999999866555443
Q ss_pred cC--CCCCeeEEEeCcEeecCCCcc-ccc---ccccEEEE-EEeCC---CCCHHHHHHHHHHHHHHhCCCC
Q 007714 467 KD--HPKPIKIYEVGDVVLLDEKKD-VGA---SCRRRLAA-LYCGA---NSGFELIHCLVDRIMEVIGTPF 527 (592)
Q Consensus 467 ~~--~~~~~~lFEiG~V~~~~~~~~-~~~---~~~~~l~~-~~~g~---~~~f~~ikg~le~ll~~lgi~~ 527 (592)
.+ +..|++++|+|.||+...+.. .|. ++....-+ +++-. ...|..+....+.++..||++.
T Consensus 322 ~~SyrdLPlr~~~~~~~~R~E~~g~~~GL~RvreF~~~e~h~f~~~~q~~~e~~~~l~~~~~~~~~lg~~~ 392 (614)
T PLN02837 322 LHSYRDLPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRGVLDLTEEILKQFGFSK 392 (614)
T ss_pred cCChhHCCHhhEeecccccCCCCCCCcCcccccceEECeEEEEeCHHHHHHHHHHHHHHHHHHHHHcCCCe
Confidence 32 347999999999998654321 121 22111110 12222 2346777788888888999874
No 89
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed
Probab=87.09 E-value=5.9 Score=44.36 Aligned_cols=110 Identities=14% Similarity=0.088 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCce-e-eCCCcCCcccccccchHHHH-HHH-HhccCCCC
Q 007714 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-V-GNPRTSDFEVVRTTLMPGIL-KTI-GHNKDHPK 471 (592)
Q Consensus 396 ~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v-i-~NP~s~e~~~lR~SLlpgLL-~~~-~~N~~~~~ 471 (592)
.++.+.+|+.|...||.||-|..|++... + ....+. . .|-.. ...+||+|- .|. +.+ ...
T Consensus 176 s~i~~~iR~f~~~~gF~EVeTPiL~~~~~-----G---a~a~pF~t~~~~~~-~~~yL~~Sp--ql~lk~l~v~g----- 239 (491)
T PRK00484 176 SKIISAIRRFLDNRGFLEVETPMLQPIAG-----G---AAARPFITHHNALD-IDLYLRIAP--ELYLKRLIVGG----- 239 (491)
T ss_pred HHHHHHHHHHHHHCCCEEEECCceeccCC-----C---ccceeeeeccccCC-CceEeccCH--HHHHHHHHhcc-----
Confidence 45778899999999999999999975421 0 001122 2 23322 234588764 433 332 222
Q ss_pred CeeEEEeCcEeecCCCcccccccccEEEEEEeCCCCCHHHHHHHHHHHHHHh
Q 007714 472 PIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVI 523 (592)
Q Consensus 472 ~~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~g~~~~f~~ikg~le~ll~~l 523 (592)
--|+||||++|+.++.+.++..|.+++-+=.+. .++.++..+++.++..+
T Consensus 240 ~~rVfei~~~FR~E~~~~rH~pEFt~lE~e~a~--~d~~d~m~~~E~li~~i 289 (491)
T PRK00484 240 FERVYEIGRNFRNEGIDTRHNPEFTMLEFYQAY--ADYNDMMDLTEELIRHL 289 (491)
T ss_pred CCcEEEEecceecCCCCCCcCCceEEEEEEEec--CCHHHHHHHHHHHHHHH
Confidence 168999999998766544455566666654444 48889888888777644
No 90
>PTZ00385 lysyl-tRNA synthetase; Provisional
Probab=86.98 E-value=5.3 Score=46.06 Aligned_cols=112 Identities=14% Similarity=0.100 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCce-e-eCCCcCCcccccccchHHHHHHHHhccCCCCCe
Q 007714 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-V-GNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPI 473 (592)
Q Consensus 396 ~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v-i-~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~~ 473 (592)
.++.+.+|+.|...||.||-|..|.+... +.+..+. + .|-.. .-.+||+|-=--|=..+..- . -
T Consensus 237 s~I~~aiR~ff~~~gFlEVeTPiL~~~~~--------ga~a~pF~t~~n~~~-~~~yL~~SPELylKrLivgG----~-e 302 (659)
T PTZ00385 237 HVMLQALRDYFNERNFVEVETPVLHTVAS--------GANAKSFVTHHNANA-MDLFLRVAPELHLKQCIVGG----M-E 302 (659)
T ss_pred HHHHHHHHHHHHHCCCEEeeCCEeeccCC--------CCCccceEeecccCC-CCEEecCChHHHHHHHhhcc----c-C
Confidence 45778899999999999999999975321 0011122 2 13222 22468777432222222221 1 6
Q ss_pred eEEEeCcEeecCCCcccccccccEEEEEEeCCCCCHHHHHHHHHHHHHHh
Q 007714 474 KIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVI 523 (592)
Q Consensus 474 ~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~g~~~~f~~ikg~le~ll~~l 523 (592)
|+||||++|+.++.+..+..|.+++-+=.+. .++.++-.++|.++..+
T Consensus 303 rVyeIg~~FRnE~~~~rH~pEFTmlE~y~a~--~d~~d~m~l~E~li~~~ 350 (659)
T PTZ00385 303 RIYEIGKVFRNEDADRSHNPEFTSCEFYAAY--HTYEDLMPMTEDIFRQL 350 (659)
T ss_pred CEEEEeceecCCCCCCCccccccceeeeeec--CCHHHHHHHHHHHHHHH
Confidence 8999999998765543444445555543333 48999999999888765
No 91
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae.
Probab=86.76 E-value=2.1 Score=47.74 Aligned_cols=134 Identities=13% Similarity=0.088 Sum_probs=82.9
Q ss_pred hHHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcC-CCCCCCCce-eeCCCc---CCcccccccchHHHHHHHHhccC
Q 007714 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLN-RQTDESTAV-VGNPRT---SDFEVVRTTLMPGILKTIGHNKD 468 (592)
Q Consensus 394 ~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~-~~~~~~~~v-i~NP~s---~e~~~lR~SLlpgLL~~~~~N~~ 468 (592)
-.+++.+.+++.+...||+|+.+..|.+.+....... ...-.++.. +..--. .+--+||++.-|.+....+...+
T Consensus 40 i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~f~v~~~g~~~~~e~l~LrPt~e~~i~~~~~~~i~ 119 (472)
T TIGR00408 40 IWKNIQKILRNILDEIGHEEVYFPMLIPESELAKEKDHIKGFEPEVYWITHGGLSKLDEPLALRPTSETAMYPMFKKWVK 119 (472)
T ss_pred HHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhhcchhhhcchhcEEEecCCCCccCCcEEEeCCCcHHHHHHHhcccc
Confidence 4567888899999999999999999998875322111 110012333 544221 23458999999999988777654
Q ss_pred --CCCCeeEEEeCcEeecCCCccccc---ccccEEEE--EEeCC---CCCHHHHHHHHHHHHH-HhCCCC
Q 007714 469 --HPKPIKIYEVGDVVLLDEKKDVGA---SCRRRLAA--LYCGA---NSGFELIHCLVDRIME-VIGTPF 527 (592)
Q Consensus 469 --~~~~~~lFEiG~V~~~~~~~~~~~---~~~~~l~~--~~~g~---~~~f~~ikg~le~ll~-~lgi~~ 527 (592)
+.+|++++++|.||+.+.....|. ++...--+ +.+.. ...+..+......++. .||++.
T Consensus 120 S~rdLPlr~~q~~~vfR~E~~~~~gl~R~rEF~~~e~h~~~~~~e~a~~e~~~~l~~y~~i~~~~lglp~ 189 (472)
T TIGR00408 120 SYTDLPLKINQWVNVFRYETKHTRPFLRTREFTWQEAHTAHATAEEAEEQVLRALDIYKEFIENSLAIPY 189 (472)
T ss_pred ChhhcCHHHhheeeeecCCCCCCCCcceeeeeehhhhhhhhCCHHHHHHHHHHHHHHHHHHHHhccCCeE
Confidence 357999999999997654321111 11110000 00110 1235566777888887 899873
No 92
>PRK12445 lysyl-tRNA synthetase; Reviewed
Probab=86.74 E-value=3.7 Score=46.13 Aligned_cols=110 Identities=12% Similarity=0.094 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCce--eeCCCcCCcccccccchHHH-HHH-HHhccCCCC
Q 007714 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV--VGNPRTSDFEVVRTTLMPGI-LKT-IGHNKDHPK 471 (592)
Q Consensus 396 ~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v--i~NP~s~e~~~lR~SLlpgL-L~~-~~~N~~~~~ 471 (592)
.++.+.+|+.|...||.||-|..|.+... + ....+. -.|-...+ .+||+|- .| |+. +...
T Consensus 188 s~i~~~iR~f~~~~gFiEVeTPiL~~~~g-----G---a~a~pF~t~~~~~~~~-~yL~~Sp--ELylKrlivgG----- 251 (505)
T PRK12445 188 SKILAAIRQFMVARGFMEVETPMMQVIPG-----G---ASARPFITHHNALDLD-MYLRIAP--ELYLKRLVVGG----- 251 (505)
T ss_pred HHHHHHHHHHHHHCCCEEeeCCeeEecCC-----C---CcccceecccccCCcc-eeeecCH--HHHHHHHHhcc-----
Confidence 35778899999999999999999975321 0 001111 23433332 4688875 33 333 2221
Q ss_pred CeeEEEeCcEeecCCCcccccccccEEEEEEeCCCCCHHHHHHHHHHHHHHh
Q 007714 472 PIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVI 523 (592)
Q Consensus 472 ~~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~g~~~~f~~ikg~le~ll~~l 523 (592)
=-|+||||++|+.++.+.++..|.+++-+=++. +++.++...++.++..+
T Consensus 252 ~~rVfeIg~~FRnE~~~~rH~pEFTmlE~y~a~--~d~~d~m~l~E~li~~l 301 (505)
T PRK12445 252 FERVFEINRNFRNEGISVRHNPEFTMMELYMAY--ADYHDLIELTESLFRTL 301 (505)
T ss_pred CCcEEEEehhccCCCCCCCcCcccceeeeeeec--CCHHHHHHHHHHHHHHH
Confidence 167999999998766544455556666554444 38999888888887654
No 93
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX. Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown.
Probab=86.51 E-value=1.6 Score=45.66 Aligned_cols=113 Identities=13% Similarity=0.057 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCce-ee--CC-CcCCcccccccchHHHHHHHHhccCCC
Q 007714 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VG--NP-RTSDFEVVRTTLMPGILKTIGHNKDHP 470 (592)
Q Consensus 395 ~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v-i~--NP-~s~e~~~lR~SLlpgLL~~~~~N~~~~ 470 (592)
...+.+.+|+.+...||.||-|..|.+..-. + .+.++. +. +| -...-..||+|-=-.+=+.++...
T Consensus 4 rs~i~~~ir~~f~~~gF~EV~TP~l~~~~~~-e------~~~~~F~~~y~~~~~~~~~~yL~~Spql~lk~ll~~g~--- 73 (304)
T TIGR00462 4 RARLLAAIRAFFAERGVLEVETPLLSPAPVT-D------PHLDAFATEFLGPDGEGRPLYLQTSPEYAMKRLLAAGS--- 73 (304)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCeEecCCCC-C------cCCcceeeeccCCCCCCcceeeecCHHHHHHHHHhccC---
Confidence 3567889999999999999999999865210 0 001112 21 11 112346788874332222344322
Q ss_pred CCeeEEEeCcEeecCCCcccccccccEEEEEEeCCCCCHHHHHHHHHHHHH
Q 007714 471 KPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIME 521 (592)
Q Consensus 471 ~~~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~g~~~~f~~ikg~le~ll~ 521 (592)
-|+||||+||+.++.+..+..+.+++-+-.+ -.++.++-..++.++.
T Consensus 74 --~rVfeigp~FRaE~~~~rHl~EFtmLE~e~~--~~d~~d~m~~~e~li~ 120 (304)
T TIGR00462 74 --GPIFQICKVFRNGERGRRHNPEFTMLEWYRP--GFDYHDLMDEVEALLQ 120 (304)
T ss_pred --CCEEEEcCceeCCCCCCCcccHHHhHHHHHH--cCCHHHHHHHHHHHHH
Confidence 5799999999876543233333333332111 2467777766666654
No 94
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial. This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms.
Probab=86.34 E-value=3.1 Score=46.57 Aligned_cols=110 Identities=15% Similarity=0.139 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCce-e-eCCCcCCcccccccchHHHH-HHH-HhccCCCC
Q 007714 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-V-GNPRTSDFEVVRTTLMPGIL-KTI-GHNKDHPK 471 (592)
Q Consensus 396 ~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v-i-~NP~s~e~~~lR~SLlpgLL-~~~-~~N~~~~~ 471 (592)
.++.+.+|+.|...||.||-|..|++..- + . .-.+. . .|-.. .-.+||+| |.|- +.+ ....
T Consensus 176 s~i~~~iR~fl~~~gF~EVeTP~L~~~~g-----g-a--~a~pF~t~~~~~~-~~~yLriS--pELylKrlivgG~---- 240 (496)
T TIGR00499 176 SKIIKAIRRFLDDRGFIEVETPMLQVIPG-----G-A--NARPFITHHNALD-MDLYLRIA--PELYLKRLIVGGF---- 240 (496)
T ss_pred HHHHHHHHHHHHHCcCEEEeCCeeecCCC-----C-c--cceeEEeecccCC-CceEEecC--HHHHHHHHHhCCC----
Confidence 45778899999999999999999986421 1 0 01122 2 23332 33569988 5554 233 2221
Q ss_pred CeeEEEeCcEeecCCCcccccccccEEEEEEeCCCCCHHHHHHHHHHHHHHh
Q 007714 472 PIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVI 523 (592)
Q Consensus 472 ~~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~g~~~~f~~ikg~le~ll~~l 523 (592)
-|+||||++|+.++.+.++..|.+++-+=.+. +++.++-..+|.++..+
T Consensus 241 -~rVfeIg~~FRnE~~~~rH~pEFTmlE~y~a~--~d~~dlm~~~E~li~~i 289 (496)
T TIGR00499 241 -EKVYEIGRNFRNEGVDTTHNPEFTMIEFYQAY--ADYEDLMDLTENLFKFL 289 (496)
T ss_pred -CceEEEecceecCCCCCcccchhheeehhhhc--CCHHHHHHHHHHHHHHH
Confidence 67999999998766544444555565542233 48888888888777643
No 95
>PF11734 TilS_C: TilS substrate C-terminal domain; InterPro: IPR012796 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of lysidine-tRNA(Ile) synthetase, which ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. The N-terminal region contains the highly conserved SGGXDS motif, predicted to be a PP-loop motif involved in ATP binding. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) versus AUG (Met) and UGA (stop) versus UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This domain is found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain architecture of this protein is variable; some, including characterised proteins of Escherichia coli and Bacillus subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family. It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer). The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, E. coli NtrL, and B. subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain. The HUP domain class (after HIGH-signature proteins, UspA, and PP-ATPase) groups together PP-loop ATPases, the nucleotide-binding domains of class I aminoacyl-tRNA synthetases, UspA protein (USPA domains), photolyases, and electron transport flavoproteins (ETFP). The HUP domain is a distinct class of alpha/beta domain[]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3A2K_A 3HJ7_A 1NI5_A.
Probab=85.07 E-value=2.7 Score=34.20 Aligned_cols=68 Identities=16% Similarity=0.198 Sum_probs=43.5
Q ss_pred ecCCCceEEEeCCCcccCChhHHHhhhccccccccccccccCCCceeEEEeCCCCeeecCCcccCCcceeecCCeEEEE
Q 007714 177 ALPPSHINFVPLKQTRDFTADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNRTVLSLPPIINGAHSAITLKTKNVFI 255 (592)
Q Consensus 177 ~~~~~~i~f~~L~~~~~~~~~el~~l~~~~~~l~~y~~i~~~~~~~~vI~D~~~~vlslagIigg~~s~It~~T~nI~i 255 (592)
...++ .+|.|.+.....+..+++. +.+..... .+.+|+|++++ .+++++|+--+....++++|+.+-|
T Consensus 5 ~r~~g-dri~~~g~~~~k~lKk~~~----e~kIP~~~-----R~~~Pll~~~~-~iv~v~g~~~~~~~~~~~~~~~~~i 72 (74)
T PF11734_consen 5 FRQPG-DRIRPAGRGGSKKLKKLFQ----EAKIPPWQ-----RDRLPLLCDGG-EIVWVPGLRVSERFSADPNTKGWRI 72 (74)
T ss_dssp C--TT-SEEEBTTSSSEEEHHHHHH----HCT--HHH-----CCCSEEEEETT-EEEEETTTEEBCCGC-SSSS--EEE
T ss_pred ecCCC-CEEEECCCCCCchHHHHHH----HcCCCHHH-----HCcEEEEEECC-EEEEEeCeeeChhheecCCCCcEEE
Confidence 33344 3888887654445566654 44444332 24679999977 6999999999999999999988744
No 96
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated
Probab=84.49 E-value=7.1 Score=43.25 Aligned_cols=112 Identities=13% Similarity=0.011 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCce-ee---CCCc----CCcccccccchHHHHHHHHhc
Q 007714 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VG---NPRT----SDFEVVRTTLMPGILKTIGHN 466 (592)
Q Consensus 395 ~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v-i~---NP~s----~e~~~lR~SLlpgLL~~~~~N 466 (592)
...+.+.+|+.|...||.||-|..+++..- +...++. +. +|.+ ..-..|++|----+ +.+...
T Consensus 136 Rs~i~~~iR~f~~~~gf~EV~TP~L~~~~~--------eg~~~~F~v~~~~~~~~~~~~~~~~~L~~Spql~l-q~l~~g 206 (450)
T PRK03932 136 RNTLAQAIHEFFNENGFVWVDTPIITASDC--------EGAGELFRVTTLDLDFSKDFFGKEAYLTVSGQLYA-EAYAMA 206 (450)
T ss_pred HHHHHHHHHHHHHHCCCEEecCCceeccCC--------CCCCCceEeecccccccccccCCCcccccCHHHHH-HHHHhc
Confidence 345788999999999999999999986421 0112233 42 1111 12347888864443 544421
Q ss_pred cCCCCCeeEEEeCcEeecCCC-cccccccccEEEEEEeCCCCCHHHHHHHHHHHHHH
Q 007714 467 KDHPKPIKIYEVGDVVLLDEK-KDVGASCRRRLAALYCGANSGFELIHCLVDRIMEV 522 (592)
Q Consensus 467 ~~~~~~~~lFEiG~V~~~~~~-~~~~~~~~~~l~~~~~g~~~~f~~ikg~le~ll~~ 522 (592)
--|+||||++|+..+. +..+..|.+++-+=.+. .++.++-..++.++..
T Consensus 207 -----~~rVf~i~~~FR~E~~~t~rHl~EFt~lE~e~~~--~~~~~~m~~~e~li~~ 256 (450)
T PRK03932 207 -----LGKVYTFGPTFRAENSNTRRHLAEFWMIEPEMAF--ADLEDNMDLAEEMLKY 256 (450)
T ss_pred -----cCCeEEeeeccccCCCCCccccccccccceEEec--cCHHHHHHHHHHHHHH
Confidence 1679999999987653 22333455665553343 3677777776666553
No 97
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=83.53 E-value=7.3 Score=41.15 Aligned_cols=110 Identities=17% Similarity=0.124 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCce-eeCCCcCCcccccccchHHHHHHHHhccCCCCCe
Q 007714 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPI 473 (592)
Q Consensus 395 ~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v-i~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~~ 473 (592)
...+.+.+|+.+...||.||-|..+....- + ....++ + | ....--.||+|---- |+.+... --
T Consensus 27 rs~i~~~ir~~f~~~gf~eV~TP~l~~~~~--e------~~~~~f~~-~-~~~~~~yL~~Spql~-lk~l~~~-----~~ 90 (322)
T cd00776 27 RSEVLRAFREFLRENGFTEVHTPKITSTDT--E------GGAELFKV-S-YFGKPAYLAQSPQLY-KEMLIAA-----LE 90 (322)
T ss_pred HHHHHHHHHHHHHHCCCEEeeCCceecCCC--C------ccCCcccc-c-cCCCcceecCCHHHH-HHHHHHh-----hh
Confidence 345788999999999999999999987431 0 001122 2 1 111234677775543 3443322 25
Q ss_pred eEEEeCcEeecCCCc-ccccccccEEEEEEeCCCCCHHHHHHHHHHHHH
Q 007714 474 KIYEVGDVVLLDEKK-DVGASCRRRLAALYCGANSGFELIHCLVDRIME 521 (592)
Q Consensus 474 ~lFEiG~V~~~~~~~-~~~~~~~~~l~~~~~g~~~~f~~ikg~le~ll~ 521 (592)
++||||+||+.++.. ..+..|.+++-+=.++. .++.++...++.++.
T Consensus 91 ~vf~i~~~FR~E~~~~~rHl~EFtmlE~e~~~~-~~~~dlm~~~e~ll~ 138 (322)
T cd00776 91 RVYEIGPVFRAEKSNTRRHLSEFWMLEAEMAFI-EDYNEVMDLIEELIK 138 (322)
T ss_pred hhEEeccccccCCCCcCCCcceeeccceeeecc-CCHHHHHHHHHHHHH
Confidence 789999999876432 13334555555433332 278887777776654
No 98
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional
Probab=83.19 E-value=8.6 Score=44.79 Aligned_cols=112 Identities=14% Similarity=0.115 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCceeeCC-CcCCcccccccchHHHHHHHHhccCCCCCe
Q 007714 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAVVGNP-RTSDFEVVRTTLMPGILKTIGHNKDHPKPI 473 (592)
Q Consensus 395 ~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~vi~NP-~s~e~~~lR~SLlpgLL~~~~~N~~~~~~~ 473 (592)
..++.+.+|+.|...||.||-|..|+.... ....+.++... ...++-.|++| |.|.+-+.-- .+ =-
T Consensus 159 Rs~i~~~iR~fl~~~gFiEVeTPiL~~s~~--------eGAr~~~~p~~~~~~~~y~L~qS--PQlykq~lm~--~G-~~ 225 (706)
T PRK12820 159 RHRIIKCARDFLDSRGFLEIETPILTKSTP--------EGARDYLVPSRIHPKEFYALPQS--PQLFKQLLMI--AG-FE 225 (706)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCccccCCC--------CCCcceEEeeecCCCcceecCCC--HHHHHHHHHh--cc-CC
Confidence 345788899999999999999999985321 01112221111 11223347665 4554443211 11 16
Q ss_pred eEEEeCcEeecCCCcccccccccEEEEEEeCCCCCHHHHHHHHHHHHH
Q 007714 474 KIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIME 521 (592)
Q Consensus 474 ~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~g~~~~f~~ikg~le~ll~ 521 (592)
|+|+||++|+.++.......|.+++-+=++. ++++++-.++|.++.
T Consensus 226 rvfqI~~~FR~E~~~t~r~pEFT~LE~E~af--~d~~dvm~l~E~li~ 271 (706)
T PRK12820 226 RYFQLARCFRDEDLRPNRQPEFTQLDIEASF--IDEEFIFELIEELTA 271 (706)
T ss_pred cEEEEechhcCCCCCCCcCccccccceeecc--CCHHHHHHHHHHHHH
Confidence 8999999998655432222344555543344 478888888887765
No 99
>PLN02502 lysyl-tRNA synthetase
Probab=82.35 E-value=6.6 Score=44.57 Aligned_cols=111 Identities=12% Similarity=0.035 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCce-e-eCCCcCCcccccccchHHHHHHHHhccCCCCCe
Q 007714 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-V-GNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPI 473 (592)
Q Consensus 396 ~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v-i-~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~~ 473 (592)
.++.+.+|+.|...||.||-|..|++..- + . ...+. . .|-+. ...+||+|-=--|=..+..-. -
T Consensus 233 s~i~~~iR~fl~~~gF~EVeTPiL~~~~g-----G-A--~a~pF~t~~n~~~-~~~yL~~Spel~lK~L~v~g~-----~ 298 (553)
T PLN02502 233 AKIISYIRRFLDDRGFLEVETPMLNMIAG-----G-A--AARPFVTHHNDLN-MDLYLRIATELHLKRLVVGGF-----E 298 (553)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeeeccCC-----C-c--cccceeeecccCC-cceeeecCHHHHHHHHHHhcc-----C
Confidence 35678899999999999999999976421 1 0 01122 2 24332 335788774332212232211 5
Q ss_pred eEEEeCcEeecCCCcccccccccEEEEEEeCCCCCHHHHHHHHHHHHHH
Q 007714 474 KIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEV 522 (592)
Q Consensus 474 ~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~g~~~~f~~ikg~le~ll~~ 522 (592)
|+||||++|+.++.+.++..|.+++-+=++. +++.++..+++.++..
T Consensus 299 rVfeIg~~FRnE~~~~rH~pEFtmlE~y~a~--~d~~dlm~~~E~li~~ 345 (553)
T PLN02502 299 RVYEIGRQFRNEGISTRHNPEFTTCEFYQAY--ADYNDMMELTEEMVSG 345 (553)
T ss_pred CEEEEcCeeeCCCCCCccccceeehhhhhhc--CCHHHHHHHHHHHHHH
Confidence 7999999998765433333444444432222 4788888777777653
No 100
>PLN02850 aspartate-tRNA ligase
Probab=81.09 E-value=7.1 Score=44.12 Aligned_cols=110 Identities=14% Similarity=0.136 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCce-eeCCCcCCcccccccchHHHHHHHHhccCCCCCee
Q 007714 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIK 474 (592)
Q Consensus 396 ~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v-i~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~~~ 474 (592)
..+.+.+|+.|...||.||-|..|++..- + .+...+ +.. .....+|++|----+=..+.... -|
T Consensus 229 s~i~~~~R~fl~~~gF~EV~TP~L~~~~~--e------gga~~F~v~y--f~~~~~L~qSpql~kq~li~~g~-----~r 293 (530)
T PLN02850 229 SQVCNLFREFLLSKGFVEIHTPKLIAGAS--E------GGSAVFRLDY--KGQPACLAQSPQLHKQMAICGDF-----RR 293 (530)
T ss_pred HHHHHHHHHHHHHCCcEEEeCCccccCCC--c------cccceeeecc--CCcceecCCCHHHHHHHHHHhcC-----Cc
Confidence 35778899999999999999999976431 0 011223 421 12345677774332221222222 47
Q ss_pred EEEeCcEeecCCC-cccccccccEEEEEEeCCCCCHHHHHHHHHHHHH
Q 007714 475 IYEVGDVVLLDEK-KDVGASCRRRLAALYCGANSGFELIHCLVDRIME 521 (592)
Q Consensus 475 lFEiG~V~~~~~~-~~~~~~~~~~l~~~~~g~~~~f~~ikg~le~ll~ 521 (592)
+||||.||+.+++ +..+..|.+++-+ .+.-..++.++-..++.++.
T Consensus 294 VfeIgp~FRaE~s~t~RHl~EFt~Le~-Em~~~~~y~evm~~~E~ll~ 340 (530)
T PLN02850 294 VFEIGPVFRAEDSFTHRHLCEFTGLDL-EMEIKEHYSEVLDVVDELFV 340 (530)
T ss_pred eEEEecccccCCCCCCccchhhccchh-hhhhhcCHHHHHHHHHHHHH
Confidence 9999999987653 1122223333321 11112356666666655543
No 101
>KOG1936 consensus Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=79.40 E-value=15 Score=39.77 Aligned_cols=157 Identities=14% Similarity=0.117 Sum_probs=102.4
Q ss_pred CCCchhHhHHHHHhCCC------------CCCCCCCCCC-CCCh-----HHHHHHHHHHHHHHCCceEEeeccccChHHH
Q 007714 364 LHPCDVMEDVAIAYGYN------------NIPKRKPASV-KPLA-----LNEFSDLMRLEIAMNGFTEVLTWILCSSKEI 425 (592)
Q Consensus 364 ~~~~DliEEIar~yGyd------------ni~~~~p~~~-~~~~-----~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~ 425 (592)
..+.++-|+||.+.--. +|..+.|+.. ...| .+.+-+.+++.+...|+.++=|..|-=++..
T Consensus 28 a~~~~~~~~va~~~~~~~~~~~~~~~~~~k~~lKtPKGTrD~~p~qm~lRe~if~~i~~vFkrhGa~~iDTPVFElkeiL 107 (518)
T KOG1936|consen 28 ASPEQISEEVALILALKNGLGRSGSIFKKKFSLKTPKGTRDFSPEQMALREKIFSTIKEVFKRHGAETIDTPVFELKEIL 107 (518)
T ss_pred CChhHhhHHHHHHHHHhcccCCCCCCcCcceeecCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCeeccccchhHHHHH
Confidence 34456778888887444 3444455543 2223 2355677899999999999999999776643
Q ss_pred HHHcCCCCCCCCce--eeCCCcCCcccccccchHHHHHHHHhccCCCCCeeEEEeCcEeecCCCccc--ccccccEEEEE
Q 007714 426 STMLNRQTDESTAV--VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIKIYEVGDVVLLDEKKDV--GASCRRRLAAL 501 (592)
Q Consensus 426 ~~~~~~~~~~~~~v--i~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~~~lFEiG~V~~~~~~~~~--~~~~~~~l~~~ 501 (592)
..+-+ ++ .+.+ +.. ---|.=.||.-|.+.+-+-++-|+- ..++-|-|++||..+...-+ ..|+..+|-+=
T Consensus 108 ~gKYG--Ed-skLiYdlkD-QGGEl~SLRYDLTVPfARylAmNki--~sikRy~iAkVyRRd~P~mtrGR~REFYQcDFD 181 (518)
T KOG1936|consen 108 TGKYG--ED-SKLIYDLKD-QGGELCSLRYDLTVPFARYLAMNKI--TSIKRYHIAKVYRRDQPAMTRGRYREFYQCDFD 181 (518)
T ss_pred hhhcc--cc-cceeEehhh-cCCcEEEeecccccHHHHHHHHccc--ccceeeeEEEEEeccCchhhchhhhhhhccCcc
Confidence 22211 11 1233 332 2345667999999999999999933 35999999999998865322 23566677666
Q ss_pred EeCC----CCCHHHHHHHHHHHHHHhCCCC
Q 007714 502 YCGA----NSGFELIHCLVDRIMEVIGTPF 527 (592)
Q Consensus 502 ~~g~----~~~f~~ikg~le~ll~~lgi~~ 527 (592)
++|. ..++ +.-+++..+|..|++..
T Consensus 182 IAG~~d~M~pda-E~lkiv~e~L~~l~Igd 210 (518)
T KOG1936|consen 182 IAGQFDPMIPDA-ECLKIVVEILSRLGIGD 210 (518)
T ss_pred ccccCCCCCchH-HHHHHHHHHHhhcCccc
Confidence 6774 2344 44556666888888863
No 102
>PRK04173 glycyl-tRNA synthetase; Provisional
Probab=78.82 E-value=23 Score=39.35 Aligned_cols=82 Identities=11% Similarity=0.081 Sum_probs=51.4
Q ss_pred CCcccccccchHHHHHHHHhccC--C-CCCeeEEEeCcEeecCCCccccc---ccccEEEE-EEeCCC---CCHHHHHHH
Q 007714 446 SDFEVVRTTLMPGILKTIGHNKD--H-PKPIKIYEVGDVVLLDEKKDVGA---SCRRRLAA-LYCGAN---SGFELIHCL 515 (592)
Q Consensus 446 ~e~~~lR~SLlpgLL~~~~~N~~--~-~~~~~lFEiG~V~~~~~~~~~~~---~~~~~l~~-~~~g~~---~~f~~ikg~ 515 (592)
.+.-+|||....|+.-..+...+ + .+|++++|+|+||+...+.-.|. ++....-+ +++.+. ..+......
T Consensus 157 ~~~~~lRpetaqg~~~~f~~~~~syr~dLPlr~aq~g~~~RnE~s~~~gL~RvReF~q~e~hiF~~peq~~~e~~~~l~~ 236 (456)
T PRK04173 157 KSLGYLRPETAQGIFVNFKNVLRTARKKLPFGIAQIGKSFRNEITPRNFIFRTREFEQMELEFFVKPGTDNEWFAYWIEL 236 (456)
T ss_pred CcceeeccccchhHHHHHHHHHHhccccCCeeeeEEchhHhCccCCCCCceeeceeeeeEEEEEECcChHHHHHHHHHHH
Confidence 34557888888888877666554 4 57999999999998654322221 33222222 334432 235556677
Q ss_pred HHHHHHHhCCCC
Q 007714 516 VDRIMEVIGTPF 527 (592)
Q Consensus 516 le~ll~~lgi~~ 527 (592)
+..++..+|++.
T Consensus 237 ~~~~l~~lG~~~ 248 (456)
T PRK04173 237 RKNWLLDLGIDP 248 (456)
T ss_pred HHHHHHHcCCCc
Confidence 778888899873
No 103
>PLN02320 seryl-tRNA synthetase
Probab=78.09 E-value=14 Score=41.41 Aligned_cols=127 Identities=15% Similarity=0.184 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCC-Cce-eeCCCcCCcccccccchHHHHHHHHhccC---CC
Q 007714 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDES-TAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKD---HP 470 (592)
Q Consensus 396 ~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~-~~v-i~NP~s~e~~~lR~SLlpgLL~~~~~N~~---~~ 470 (592)
..+.+-.++.+...||+||.+..+++.+........+.... ... +.+ +++-.+-|+=.| |.+...|.- +.
T Consensus 237 ~ALi~f~ld~~~~~Gy~eV~tP~lv~~~l~~~sG~~p~~e~~~~y~ie~---ed~~Li~TaE~P--l~~~~~~~ils~~d 311 (502)
T PLN02320 237 MALVNWTLSEVMKKGFTPLTTPEIVRSSVVEKCGFQPRGDNTQVYSIDG---SDQCLIGTAEIP--VGGIHMDSILLESA 311 (502)
T ss_pred HHHHHHHHHHHHHcCCEEEECCccchHHHHHhcCCCcccccCceeEECC---CceEEeeccccc--ccccccccccCHhh
Confidence 45677778888888999999999999886443322221111 223 543 333222222222 111111211 24
Q ss_pred CCeeEEEeCcEeecCCCc----cccc---ccccEEE-EEEeCC---CCCHHHHHHHHHHHHHHhCCCC
Q 007714 471 KPIKIYEVGDVVLLDEKK----DVGA---SCRRRLA-ALYCGA---NSGFELIHCLVDRIMEVIGTPF 527 (592)
Q Consensus 471 ~~~~lFEiG~V~~~~~~~----~~~~---~~~~~l~-~~~~g~---~~~f~~ikg~le~ll~~lgi~~ 527 (592)
.|+|+++.|.+|+...++ ..|. ++....- .+++.. ..-|.++-...+.+++.||+++
T Consensus 312 LPlRy~~~s~cFR~EAgs~G~d~rGL~RvhQF~KvE~~if~~peqs~~e~e~ll~~~e~i~~~LgLpy 379 (502)
T PLN02320 312 LPLKYVAFSHCFRTEAGAAGAATRGLYRVHQFSKVEMFVICRPEESESFHEELIQIEEDLFTSLGLHF 379 (502)
T ss_pred CCceeEEeccccccccccCCCcCCCceeeeeeecccEEEEECHHHHHHHHHHHHHHHHHHHHHcCCCe
Confidence 699999999999876542 1221 1222111 123332 2347788899999999999984
No 104
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences.
Probab=77.78 E-value=21 Score=40.80 Aligned_cols=113 Identities=12% Similarity=0.138 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCcee-eCCCcCCcccccccchHHHHHHHHhccCCCCCe
Q 007714 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAVV-GNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPI 473 (592)
Q Consensus 395 ~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~vi-~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~~ 473 (592)
..++.+.+|+.|...||.||-|..|++... ....+.++ .+-...++-.||+| |.|.+-+.- ..+. =
T Consensus 141 Rs~i~~~iR~ff~~~gFiEVeTP~L~~s~~--------eGar~f~vp~~~~~~~~y~L~qS--pQlykq~l~--v~G~-e 207 (583)
T TIGR00459 141 RHKVTKAVRNFLDQQGFLEIETPMLTKSTP--------EGARDYLVPSRVHKGEFYALPQS--PQLFKQLLM--VSGV-D 207 (583)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCeeccCCC--------CCCcceeeeeecCCCceeecCCC--HHHHHHHHH--hccc-C
Confidence 346788999999999999999999985321 00011111 11011222236665 444443211 0111 6
Q ss_pred eEEEeCcEeecCCCcccccccccEEEEEEeCCCCCHHHHHHHHHHHHHH
Q 007714 474 KIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEV 522 (592)
Q Consensus 474 ~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~g~~~~f~~ikg~le~ll~~ 522 (592)
|+||||++|+.++.......|.+++-+=++. ++++++..++|.++..
T Consensus 208 rvfqI~~~FR~E~~~t~r~pEFT~le~E~af--~d~~dvm~~~E~li~~ 254 (583)
T TIGR00459 208 RYYQIARCFRDEDLRADRQPEFTQIDMEMSF--MTQEDVMELIEKLVSH 254 (583)
T ss_pred cEEEEcceeeCCCCCCCCCcccCcceeeecC--CCHHHHHHHHHHHHHH
Confidence 8999999998655432233455566554444 4788888888777653
No 105
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional
Probab=77.32 E-value=19 Score=39.64 Aligned_cols=109 Identities=14% Similarity=0.100 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCce-eeCCCcCCcccccccchHHHHHHHHhccCCCCCee
Q 007714 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIK 474 (592)
Q Consensus 396 ~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v-i~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~~~ 474 (592)
..+.+.+|+.|...||.||-|..|++..- +.+.+++ +.. . ...-.||+|---- ++.+... + --|
T Consensus 140 s~i~~~iR~ff~~~gf~EV~TP~L~~~~~--------eg~~~~f~~~~-~-~~~~~L~~Spql~-~q~l~~~---g-~~r 204 (437)
T PRK05159 140 SEVLRAFREFLYENGFTEIFTPKIVASGT--------EGGAELFPIDY-F-EKEAYLAQSPQLY-KQMMVGA---G-FER 204 (437)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCcccccCC--------CCCcceEeEEe-c-CCceEecCCHHHH-HHHHHhc---C-CCc
Confidence 45778899999999999999999975321 0112233 321 1 1234677775443 3333321 1 167
Q ss_pred EEEeCcEeecCCCc-ccccccccEEEEEEeCCCCCHHHHHHHHHHHH
Q 007714 475 IYEVGDVVLLDEKK-DVGASCRRRLAALYCGANSGFELIHCLVDRIM 520 (592)
Q Consensus 475 lFEiG~V~~~~~~~-~~~~~~~~~l~~~~~g~~~~f~~ikg~le~ll 520 (592)
+||||++|+.++.. ..+..|.+++-+=.++.+ ++.++-..++.++
T Consensus 205 Vf~i~~~FR~E~~~t~rHl~EFt~lE~e~a~~~-~~~~lm~~~e~lv 250 (437)
T PRK05159 205 VFEIGPVFRAEEHNTSRHLNEYTSIDVEMGFID-DHEDVMDLLENLL 250 (437)
T ss_pred EEEEeceeeCCCCCCcccchhhheeeeeeeecc-cHHHHHHHHHHHH
Confidence 99999999865542 133445666654334321 3666655555444
No 106
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn).
Probab=77.08 E-value=18 Score=39.81 Aligned_cols=109 Identities=12% Similarity=0.086 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCce-eeCCCcCCcccccccchHHHHHHHHhccCCCCCee
Q 007714 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIK 474 (592)
Q Consensus 396 ~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v-i~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~~~ 474 (592)
..+.+.+|+.|...||.||-|..|++..- +.+.+.+ +. ....-..||+|----+=..++.. --|
T Consensus 137 s~i~~~iR~ff~~~gf~EV~TP~L~~~~~--------eg~~~~f~v~--~~~~~~yL~~Spql~~q~li~~g-----~~r 201 (428)
T TIGR00458 137 SGVLESVREFLAEEGFIEVHTPKLVASAT--------EGGTELFPIT--YFEREAFLGQSPQLYKQQLMAAG-----FER 201 (428)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCceecCCC--------CCCcceeeeE--ecCCcEEECcCHHHHHHHHHhcc-----cCc
Confidence 35678899999999999999999986431 0011222 31 01233457777443221122221 157
Q ss_pred EEEeCcEeecCCCc-ccccccccEEEEEEeCCCCCHHHHHHHHHHHHH
Q 007714 475 IYEVGDVVLLDEKK-DVGASCRRRLAALYCGANSGFELIHCLVDRIME 521 (592)
Q Consensus 475 lFEiG~V~~~~~~~-~~~~~~~~~l~~~~~g~~~~f~~ikg~le~ll~ 521 (592)
+||||++|+.++.. ..+..|.+++-+=.+. .++.++...++.++.
T Consensus 202 Vf~i~~~FR~E~~~t~rHl~EFt~lE~e~a~--~~~~dlm~~~e~li~ 247 (428)
T TIGR00458 202 VYEIGPIFRAEEHNTHRHLNEATSIDIEMAF--EDHHDVMDILEELVV 247 (428)
T ss_pred EEEEecccccCCCCCccchheeeEeeeeecc--CCHHHHHHHHHHHHH
Confidence 99999999865542 1233455566543344 366776666665543
No 107
>PRK00476 aspS aspartyl-tRNA synthetase; Validated
Probab=74.43 E-value=25 Score=40.33 Aligned_cols=112 Identities=14% Similarity=0.138 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCceeeCC-CcCCcccccccchHHHHHHHHhccCCCCCee
Q 007714 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAVVGNP-RTSDFEVVRTTLMPGILKTIGHNKDHPKPIK 474 (592)
Q Consensus 396 ~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~vi~NP-~s~e~~~lR~SLlpgLL~~~~~N~~~~~~~~ 474 (592)
.++.+.+|+.|...||.||-|..|+.... + ...+.++... ...++-.|++| |.|.+-+.- ..+ =-|
T Consensus 145 s~i~~~iR~ff~~~gFiEV~TP~L~~s~~--e------ga~~f~v~~~~~~~~~~~L~qS--pql~kq~l~--~~g-~~r 211 (588)
T PRK00476 145 SKVTSAIRNFLDDNGFLEIETPILTKSTP--E------GARDYLVPSRVHPGKFYALPQS--PQLFKQLLM--VAG-FDR 211 (588)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeeecCCC--C------CCccceecccccCCceeecCCC--HHHHHHHHH--hcc-cCc
Confidence 46788999999999999999999986421 0 0011112211 12234457666 444433211 011 168
Q ss_pred EEEeCcEeecCCCcccccccccEEEEEEeCCCCCHHHHHHHHHHHHHH
Q 007714 475 IYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEV 522 (592)
Q Consensus 475 lFEiG~V~~~~~~~~~~~~~~~~l~~~~~g~~~~f~~ikg~le~ll~~ 522 (592)
+|+||+||+.++.......|.+++-+=.+. +++.++-..+|.++..
T Consensus 212 vfqi~~~FR~E~~~~~r~~EFt~le~e~af--~~~~dvm~~~E~li~~ 257 (588)
T PRK00476 212 YYQIARCFRDEDLRADRQPEFTQIDIEMSF--VTQEDVMALMEGLIRH 257 (588)
T ss_pred eEEEeceeecCCCCCCcCcccccceeeecC--CCHHHHHHHHHHHHHH
Confidence 999999998755321112255555543344 3788887777766653
No 108
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=72.35 E-value=4.3 Score=44.84 Aligned_cols=114 Identities=15% Similarity=0.107 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCce-eeCCCcCCcccccccchHHHHHHHHhccCCCCCee
Q 007714 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIK 474 (592)
Q Consensus 396 ~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v-i~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~~~ 474 (592)
.+..+.+|+.|-..||-||=|..|-+-.- +. ..+..+ -.|-+..|+ +||-+.=--|=+.+. -+. -|
T Consensus 184 s~ii~~iR~fl~~~gFlEVETP~lq~i~G-----GA--~ArPF~ThhNald~dl-yLRIApELyLKRliV----GG~-er 250 (502)
T COG1190 184 SKIIRAIREFLDDRGFLEVETPMLQPIPG-----GA--AARPFITHHNALDMDL-YLRIAPELYLKRLIV----GGF-ER 250 (502)
T ss_pred HHHHHHHHHHHHHCCCeEeccccccccCC-----Cc--ccccceeeecccCCce-EEeeccHHHHHHHHh----cCc-hh
Confidence 45678899999999999999998876431 10 113345 778877775 677543222211111 121 48
Q ss_pred EEEeCcEeecCCCcccccccccEEEEEEeCCCCCHHHHHHHHHHHHHHhC
Q 007714 475 IYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVIG 524 (592)
Q Consensus 475 lFEiG~V~~~~~~~~~~~~~~~~l~~~~~g~~~~f~~ikg~le~ll~~lg 524 (592)
+||||++|+...-+-++..+.+.+-+ .-.-++|.|+..+.+.+++.+-
T Consensus 251 VfEIgr~FRNEGid~tHNPEFTmlE~--Y~AYaDy~D~m~ltE~Li~~~a 298 (502)
T COG1190 251 VFEIGRNFRNEGIDTTHNPEFTMLEF--YQAYADYEDLMDLTEELIKELA 298 (502)
T ss_pred heeeccccccCCCccccCcchhhHHH--HHHHhHHHHHHHHHHHHHHHHH
Confidence 99999999865433333333333322 1112578888888888877653
No 109
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=71.59 E-value=14 Score=45.55 Aligned_cols=110 Identities=16% Similarity=0.176 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCce-e-eCCCcCCcccccccchHHHH-HHHHhccCCCCCe
Q 007714 397 EFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-V-GNPRTSDFEVVRTTLMPGIL-KTIGHNKDHPKPI 473 (592)
Q Consensus 397 ~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v-i-~NP~s~e~~~lR~SLlpgLL-~~~~~N~~~~~~~ 473 (592)
++.+.+|+.|...||.||-|..|.+..- + ..-++. . .|-...+ -+||+| |.|. |.+-- .+. =
T Consensus 775 ~i~~~iR~fl~~~gFlEVeTPiL~~~~g-----G---a~a~pF~t~~~~~~~~-~yLriS--PELylKrLiv---gG~-e 839 (1094)
T PRK02983 775 AVVRAVRETLVARGFLEVETPILQQVHG-----G---ANARPFVTHINAYDMD-LYLRIA--PELYLKRLCV---GGV-E 839 (1094)
T ss_pred HHHHHHHHHHHHCCCEEEeCCEeeccCC-----C---cccceeEeeecCCCcc-chhhcC--hHHHHHHHHh---ccc-C
Confidence 4567899999999999999999985421 0 001112 1 2333222 367776 3332 33221 111 6
Q ss_pred eEEEeCcEeecCCCcccccccccEEEEEEeCCCCCHHHHHHHHHHHHHHh
Q 007714 474 KIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVI 523 (592)
Q Consensus 474 ~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~g~~~~f~~ikg~le~ll~~l 523 (592)
|+||||++|+.++.+.++..|.+++-+=.+. .++.++-..+|.++..+
T Consensus 840 rVFEIg~~FRnE~~~~rHnpEFTmLE~y~a~--~dy~d~m~l~E~li~~i 887 (1094)
T PRK02983 840 RVFELGRNFRNEGVDATHNPEFTLLEAYQAH--ADYDTMRDLTRELIQNA 887 (1094)
T ss_pred ceEEEcceecCCCCCCCccccccchhhhhhc--CCHHHHHHHHHHHHHHH
Confidence 8999999998766543444455555432222 58999888888887654
No 110
>TIGR00457 asnS asparaginyl-tRNA synthetase. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.
Probab=71.55 E-value=26 Score=38.85 Aligned_cols=110 Identities=15% Similarity=0.080 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCce-ee--C-C----CcCCcccccccchHHHHHHHHhcc
Q 007714 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VG--N-P----RTSDFEVVRTTLMPGILKTIGHNK 467 (592)
Q Consensus 396 ~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v-i~--N-P----~s~e~~~lR~SLlpgLL~~~~~N~ 467 (592)
..+.+.+|+.|...||.||-|..+++..- + ...+.. +. | + .-..-.+|++| |.|.+-+..
T Consensus 140 s~i~~~~r~~~~~~gf~eV~TP~l~~~~~--e------g~~~~F~v~~~~~~~~~~~~~~~~yL~~S--pql~lq~l~-- 207 (453)
T TIGR00457 140 NALSQAIHRYFQENGFTWVSPPILTSNDC--E------GAGELFRVSTDGIDFSQDFFGKEAYLTVS--GQLYLETYA-- 207 (453)
T ss_pred HHHHHHHHHHHHHCCCEEecCCeEeecCC--C------CCCCceEecccccccchhccCCccccccC--HHHHHHHHh--
Confidence 45778899999999999999999986431 0 011223 32 1 0 11122457777 455443321
Q ss_pred CCCCCeeEEEeCcEeecCCCc-ccccccccEEEEEEeCCCCCHHHHHHHHHHHHH
Q 007714 468 DHPKPIKIYEVGDVVLLDEKK-DVGASCRRRLAALYCGANSGFELIHCLVDRIME 521 (592)
Q Consensus 468 ~~~~~~~lFEiG~V~~~~~~~-~~~~~~~~~l~~~~~g~~~~f~~ikg~le~ll~ 521 (592)
.+ =-|+||||++|+.++.. ..+..|.+++-+=.+. +++.++...+|.++.
T Consensus 208 -~g-~~rVf~i~~~FR~E~~~t~rHl~EFt~le~e~~~--~~~~dvm~~~E~lv~ 258 (453)
T TIGR00457 208 -LA-LSKVYTFGPTFRAEKSNTSRHLSEFWMIEPEMAF--ANLNDLLQLAETLIK 258 (453)
T ss_pred -hc-ccCceEeeeccccCCCCCCcCcchhccceeeeec--CCHHHHHHHHHHHHH
Confidence 11 16899999999865432 2333455555543333 257777766666554
No 111
>PLN02903 aminoacyl-tRNA ligase
Probab=68.92 E-value=39 Score=39.16 Aligned_cols=113 Identities=15% Similarity=0.137 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHH-CCceEEeeccccChHHHHHHcCCCCCCCCceeeCCC-cCCcccccccchHHHHHHHHhccCCCCC
Q 007714 395 LNEFSDLMRLEIAM-NGFTEVLTWILCSSKEISTMLNRQTDESTAVVGNPR-TSDFEVVRTTLMPGILKTIGHNKDHPKP 472 (592)
Q Consensus 395 ~~~~~~~lr~~l~~-~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~vi~NP~-s~e~~~lR~SLlpgLL~~~~~N~~~~~~ 472 (592)
..++.+.+|+.|.. .||.||-|..|++... ....+.++.... ..++-.|++| |.|.+-+.- ..+ -
T Consensus 206 Rs~i~~~iR~fl~~~~gFiEVeTPiL~~st~--------eGardf~v~~~~~~g~~y~L~qS--PQlykQ~Lm--~~G-~ 272 (652)
T PLN02903 206 RHRVVKLIRRYLEDVHGFVEIETPILSRSTP--------EGARDYLVPSRVQPGTFYALPQS--PQLFKQMLM--VSG-F 272 (652)
T ss_pred HHHHHHHHHHHHHhcCCeEEEECCeeccCCC--------CCCcccEEeeecCCCcccccCCC--HHHHHHHHH--hcc-C
Confidence 34678889999996 9999999999985431 001122222221 1233347765 455443221 111 1
Q ss_pred eeEEEeCcEeecCCCcccccccccEEEEEEeCCCCCHHHHHHHHHHHHHH
Q 007714 473 IKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEV 522 (592)
Q Consensus 473 ~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~g~~~~f~~ikg~le~ll~~ 522 (592)
-|+|+||++|+.++.......|.+++-+=++. +++.++-.++|.++..
T Consensus 273 ~RvFqIa~~FR~E~~~t~RhpEFTqLE~E~sf--~d~~dvm~~~E~li~~ 320 (652)
T PLN02903 273 DRYYQIARCFRDEDLRADRQPEFTQLDMELAF--TPLEDMLKLNEDLIRQ 320 (652)
T ss_pred CcEEEEehhhccCCCCCCcccceeeeeeeecC--CCHHHHHHHHHHHHHH
Confidence 67999999998654432222344555543333 4788888888877653
No 112
>COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism]
Probab=68.43 E-value=25 Score=38.14 Aligned_cols=129 Identities=13% Similarity=0.066 Sum_probs=86.0
Q ss_pred ChHHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCce-eeCCCcCCcccccccchHHHHHHHHhccCCCC
Q 007714 393 LALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPK 471 (592)
Q Consensus 393 ~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v-i~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~ 471 (592)
.....+.+++++.+...||..|.|..+---+- +..+.......+.+ +.+..++. -+||+-+.+.+-...++-... .
T Consensus 18 ~~~~~i~~~l~~~f~~~Gy~~v~tP~lE~~d~-~l~~~g~~l~~~~f~l~d~~g~~-l~LRpD~T~pVaR~~~~~~~~-~ 94 (390)
T COG3705 18 RRKEEIRDQLLALFRAWGYERVETPTLEPADP-LLDGAGEDLRRRLFKLEDETGGR-LGLRPDFTIPVARIHATLLAG-T 94 (390)
T ss_pred hhHHHHHHHHHHHHHHhCCccccccccchhhh-hhhccchhhhhhheEEecCCCCe-EEecccccHHHHHHHHHhcCC-C
Confidence 34556889999999999999999998876543 22221111124567 99999988 899999999999999987666 7
Q ss_pred CeeEEEeCcEeecCCCcccccc-cccEEEEEEeCC---CCCHHHHHHHHHHHHHHhCCC
Q 007714 472 PIKIYEVGDVVLLDEKKDVGAS-CRRRLAALYCGA---NSGFELIHCLVDRIMEVIGTP 526 (592)
Q Consensus 472 ~~~lFEiG~V~~~~~~~~~~~~-~~~~l~~~~~g~---~~~f~~ikg~le~ll~~lgi~ 526 (592)
|.|+---|+||+... ...|.. |..+.++=..|. .++.+-+ .+.-..|..+|+.
T Consensus 95 P~Rl~Y~G~Vfr~~~-~~~g~~~Ef~QaGiEllG~~~~~ADaEvi-~la~~~L~~~gl~ 151 (390)
T COG3705 95 PLRLSYAGKVFRARE-GRHGRRAEFLQAGIELLGDDSAAADAEVI-ALALAALKALGLA 151 (390)
T ss_pred Cceeeecchhhhcch-hccCcccchhhhhhHHhCCCcchhhHHHH-HHHHHHHHHcCCc
Confidence 999999999998762 223333 455544423332 3444333 2333344555544
No 113
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=67.99 E-value=25 Score=39.96 Aligned_cols=110 Identities=11% Similarity=0.121 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCce-eeCCCcCCcccccccchHHHHHHHHhccCCCCCee
Q 007714 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIK 474 (592)
Q Consensus 396 ~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v-i~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~~~ 474 (592)
..+.+.+|+.|...||.||-|..|++..- + .+.+.+ +. --....+|++|- .|.+-+.-- .+ --|
T Consensus 217 s~i~~~~R~fl~~~gFiEV~TP~L~~~~~--e------gga~~F~v~--yf~~~~~L~qSp--ql~kq~li~--~g-~~r 281 (550)
T PTZ00401 217 SRVCQYFRQFLIDSDFCEIHSPKIINAPS--E------GGANVFKLE--YFNRFAYLAQSP--QLYKQMVLQ--GD-VPR 281 (550)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCccccCCC--C------ccccccccc--cCCCCeecCCCH--HHHHHHHHh--cC-CCC
Confidence 35778899999999999999999976431 0 011122 21 112445777774 444333211 11 167
Q ss_pred EEEeCcEeecCCCc-ccccccccEEEEEEeCCCCCHHHHHHHHHHHHH
Q 007714 475 IYEVGDVVLLDEKK-DVGASCRRRLAALYCGANSGFELIHCLVDRIME 521 (592)
Q Consensus 475 lFEiG~V~~~~~~~-~~~~~~~~~l~~~~~g~~~~f~~ikg~le~ll~ 521 (592)
+||||.||+.++.. ..+..|.++|-+=++ -..++.++...++.++.
T Consensus 282 VfeI~p~FRaE~s~T~RHl~EFt~Le~E~~-~~~~y~evm~~~e~l~~ 328 (550)
T PTZ00401 282 VFEVGPVFRSENSNTHRHLTEFVGLDVEMR-INEHYYEVLDLAESLFN 328 (550)
T ss_pred EEEEeCeEeCCCCCCCCCccchhhhhhhhH-hcCCHHHHHHHHHHHHH
Confidence 99999999865432 122223333332111 11356777766666654
No 114
>PF13592 HTH_33: Winged helix-turn helix
Probab=64.11 E-value=5.8 Score=30.85 Aligned_cols=28 Identities=29% Similarity=0.513 Sum_probs=25.0
Q ss_pred hHHhhccCCcCCHHHHHHHHHhcCCeEE
Q 007714 314 SYINHTIGVSLEAEEVTSLLNRMQLHAE 341 (592)
Q Consensus 314 ~~i~~~LG~~l~~~~i~~~L~~lg~~~~ 341 (592)
..|.+..|+.++...+-++|++|||+..
T Consensus 12 ~~I~~~fgv~ys~~~v~~lL~r~G~s~~ 39 (60)
T PF13592_consen 12 AYIEEEFGVKYSPSGVYRLLKRLGFSYQ 39 (60)
T ss_pred HHHHHHHCCEEcHHHHHHHHHHcCCccc
Confidence 4688888999999999999999999754
No 115
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=60.87 E-value=23 Score=40.41 Aligned_cols=95 Identities=15% Similarity=0.166 Sum_probs=63.8
Q ss_pred CCChHHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCceeeCCCcC-CcccccccchHHHHHHHHhccC-
Q 007714 391 KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAVVGNPRTS-DFEVVRTTLMPGILKTIGHNKD- 468 (592)
Q Consensus 391 ~~~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~vi~NP~s~-e~~~lR~SLlpgLL~~~~~N~~- 468 (592)
+..-.+.+.+-+|..+...||+||.|..+.+.+.-..........++.... .+. +-=.+|+.--||.+...+.-.+
T Consensus 219 G~~ir~~le~y~~~~~~~~Gy~~V~TP~~~~~~l~~~SGH~~~y~e~mf~~--~~~~~~~~lKpmNCpgh~~ifk~~~~S 296 (589)
T COG0441 219 GATIRNLLEDYVRTKLRSYGYQEVKTPVLADLELWELSGHWDNYKEDMFLT--ESDDREYALKPMNCPGHILIFKSGLRS 296 (589)
T ss_pred cccHHHHHHHHHHHHHHhcCceEecCCeeeecccchhccchhhccccceee--ccCChhheeeeccCHhHHHHHhcCCcc
Confidence 445567789999999999999999999888776411111110001122211 111 2237899999999999887765
Q ss_pred -CCCCeeEEEeCcEeecCCC
Q 007714 469 -HPKPIKIYEVGDVVLLDEK 487 (592)
Q Consensus 469 -~~~~~~lFEiG~V~~~~~~ 487 (592)
|..|+|++|.|.||....+
T Consensus 297 YR~LP~r~~E~g~v~R~E~S 316 (589)
T COG0441 297 YRELPLRLAEFGYVYRYEKS 316 (589)
T ss_pred eeccchhhhhcceeecccCc
Confidence 3468999999999876544
No 116
>PF09840 DUF2067: Uncharacterized protein conserved in archaea (DUF2067); InterPro: IPR019202 This family of archaeal proteins, have no known function.
Probab=60.61 E-value=59 Score=31.67 Aligned_cols=102 Identities=17% Similarity=0.200 Sum_probs=68.3
Q ss_pred eecCCeEEEEEecccChhhHHHHHHHHHHHHHHhcCCceeEeeEEEEeeCCceeeecCCCceEEEeehhHHhhccCCcCC
Q 007714 246 ITLKTKNVFIECTATDLTKAKIVLNTMVTIFSEYCKRKYQVEPVEVVYADGRSYVYPDLSAYNMEVSLSYINHTIGVSLE 325 (592)
Q Consensus 246 It~~T~nI~iE~a~~D~~~~~~al~~~~~~l~~~~~~~~~i~~v~v~~~~g~~~~~p~~~~~~i~l~~~~i~~~LG~~l~ 325 (592)
|.-...++.|++-|.+. .+..+...+-.+..+.-+ .. + .....+++++.|.+-.|..++
T Consensus 29 v~~k~n~l~I~i~G~~~-eike~~~~Ik~~~~~vr~-k~----------------~---~~g~~~y~l~~i~r~a~~~vp 87 (190)
T PF09840_consen 29 VEVKGNSLKIEIQGYEK-EIKEAIRRIKELVRRVRS-KY----------------N---KRGLYRYSLDDIFREAGYPVP 87 (190)
T ss_pred EEEeCCEEEEEEecChH-HHHHHHHHHHHHHHHHHH-Hh----------------c---cCCceEEcHHHHHHHcCCCCC
Confidence 34444788999999887 444444433333332211 00 0 123467788999999999999
Q ss_pred HHHHHHHHHhcCCeEEEcCCCCCcceEEEEcCCCCcccCCCchhHhHHHHHhC
Q 007714 326 AEEVTSLLNRMQLHAERSASGNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYG 378 (592)
Q Consensus 326 ~~~i~~~L~~lg~~~~~~~~~~~~~~~~V~vP~~R~DI~~~~DliEEIar~yG 378 (592)
++-+.+.|+.+|+.++..+ +. +...+| +.--.++++++.++|-
T Consensus 88 ~d~L~~~L~~~G~~ae~~~---~~--i~T~a~-----~eev~~l~~~Lse~~~ 130 (190)
T PF09840_consen 88 PDLLVDALKLLGYKAEYRE---DV--IKTDAP-----LEEVVELAERLSEIYK 130 (190)
T ss_pred HHHHHHHHHhCCCeeEEeC---Ce--EEecCC-----HHHHHHHHHHHHHHHH
Confidence 9999999999999998753 23 554443 3455678889988885
No 117
>PLN02221 asparaginyl-tRNA synthetase
Probab=52.91 E-value=69 Score=36.66 Aligned_cols=28 Identities=18% Similarity=0.095 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHCCceEEeeccccChH
Q 007714 396 NEFSDLMRLEIAMNGFTEVLTWILCSSK 423 (592)
Q Consensus 396 ~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~ 423 (592)
..+.+.+|+.|...||.|+-|..+++..
T Consensus 175 S~i~~aiR~ff~~~gFiEI~TP~Lt~s~ 202 (572)
T PLN02221 175 NALAFATHSFFQEHSFLYIHTPIITTSD 202 (572)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeecccc
Confidence 4577889999999999999999998764
No 118
>KOG2472 consensus Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]
Probab=47.85 E-value=30 Score=38.30 Aligned_cols=65 Identities=15% Similarity=0.157 Sum_probs=53.9
Q ss_pred EechHHHHHHhCCCCCHHHHHHHhhhcCCcccccchhHHHHhhhccccccCCCCCCceEEEEecCCCcccccCHHHHHHH
Q 007714 5 SVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEVPANRYDLLCLEGIAQA 84 (592)
Q Consensus 5 ~~~~~~l~~~~g~~~~~~e~~~~l~~~g~e~e~~~~~~~~~~~~~~~~~~~~~~~~d~i~~ieit~NR~Dlls~~GiARe 84 (592)
.++-+.+...+|.+++.+++..+|+++=+..+-+.+ + -+++.|+|-|+|.+-.=-|+-+
T Consensus 310 ~~~~~~in~~~g~~l~~~~~~~~l~RM~L~a~v~~~--------------------~-~l~v~iPptraDIlHaCDI~ED 368 (578)
T KOG2472|consen 310 TMSIQAINFAIGLNLTIEEQAYYLTRMYLKAKVIGN--------------------G-NLEVKIPPTRADILHACDIVED 368 (578)
T ss_pred eeehhhhhhhhccCCCHHHHHHHHhhhheeeEecCC--------------------C-ceEEecCCchhhhhhhhhhhhH
Confidence 345567788899999999999999988777764332 1 2999999999999999999999
Q ss_pred HHHhcC
Q 007714 85 LRVFNK 90 (592)
Q Consensus 85 l~a~~g 90 (592)
+|..+|
T Consensus 369 ~aIAyG 374 (578)
T KOG2472|consen 369 AAIAYG 374 (578)
T ss_pred HHHHhc
Confidence 988777
No 119
>KOG0556 consensus Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=47.54 E-value=34 Score=36.96 Aligned_cols=76 Identities=18% Similarity=0.246 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCce-eeCCCcCCcccccccchHHHHHHHHhccCCCCCee
Q 007714 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIK 474 (592)
Q Consensus 396 ~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v-i~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~~~ 474 (592)
.......|+.|...||.|+.|.-+++... ..+.+.. +.--... .+|-. -|.|-+.++---. =-|
T Consensus 232 ~gvc~~FRe~L~~kgF~EIhTpKli~asS--------EGGanvF~v~Yfk~~--A~LAQ--SPQLyKQMaI~gd---f~r 296 (533)
T KOG0556|consen 232 AGVCFAFREYLRSKGFVEIHTPKLIGASS--------EGGANVFRVSYFKQK--AYLAQ--SPQLYKQMAICGD---FER 296 (533)
T ss_pred HHHHHHHHHHHHhcCcceecccccccccC--------CCCceeEEEEeccCc--chhhc--ChHHHHHHHHhcc---hhh
Confidence 34677889999999999999999987642 1112233 4433322 23433 3777776654221 168
Q ss_pred EEEeCcEeecCC
Q 007714 475 IYEVGDVVLLDE 486 (592)
Q Consensus 475 lFEiG~V~~~~~ 486 (592)
+||||.||...+
T Consensus 297 VyeIGpVfRAEd 308 (533)
T KOG0556|consen 297 VYEIGPVFRAED 308 (533)
T ss_pred eeeecceeeccc
Confidence 999999998654
No 120
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=47.18 E-value=2.1e+02 Score=31.60 Aligned_cols=125 Identities=15% Similarity=0.154 Sum_probs=77.0
Q ss_pred hHHHHHHHHHHHH----HHCCceEEeeccccChHHHHHHcCCCCCCCCce-eeCCCcCCcccccccchHHHHHHHHhccC
Q 007714 394 ALNEFSDLMRLEI----AMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKD 468 (592)
Q Consensus 394 ~~~~~~~~lr~~l----~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v-i~NP~s~e~~~lR~SLlpgLL~~~~~N~~ 468 (592)
+.-.+.+.|.+.| +..||+|+++..+++.+..+.....+.-.++.. +.++ .-.|+|.-=-.+ +|.+
T Consensus 172 ~~a~L~rAL~~f~ld~~~~~Gf~e~~~P~lv~~e~m~gtgqlpkf~e~~y~v~~~--------~~~LipTaEvpl-~~l~ 242 (429)
T COG0172 172 KGARLERALIQFMLDLHTKHGFTEVLPPYLVNLESMFGTGQLPKFEEDLYKVEDP--------DLYLIPTAEVPL-TNLH 242 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHcCceEeeCceeecHHHhhccCCCCCCcccceEecCC--------CEEEEecchhhh-HHhh
Confidence 3344555555544 588999999999999987655433332223455 7777 334555432222 2222
Q ss_pred C-------CCCeeEEEeCcEeecCCCc----cccc---ccccEEEEEE-eCCCC---CHHHHHHHHHHHHHHhCCCC
Q 007714 469 H-------PKPIKIYEVGDVVLLDEKK----DVGA---SCRRRLAALY-CGANS---GFELIHCLVDRIMEVIGTPF 527 (592)
Q Consensus 469 ~-------~~~~~lFEiG~V~~~~~~~----~~~~---~~~~~l~~~~-~g~~~---~f~~ikg~le~ll~~lgi~~ 527 (592)
+ ..|++++-.+.+|+...++ ..|. .+..++-.+. +.+.. .++.+.+..+.+++.|++++
T Consensus 243 ~~Eil~~~~LP~k~~~~S~cFR~EAGs~GrdtrGliRvHQF~KVE~v~~~~Pe~S~~~~E~m~~~ae~il~~LeLPy 319 (429)
T COG0172 243 RDEILDEEDLPIKYTAYSPCFRSEAGSAGKDTRGLIRVHQFDKVELVVITKPEESEEELEEMLGNAEEVLQELELPY 319 (429)
T ss_pred cccccccccCCeeeEEEChhhhcccccccccccceeeeeeeeeEEEEEEeCcchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 2 2589999999999876543 1221 2333444333 44332 37789999999999999985
No 121
>PTZ00425 asparagine-tRNA ligase; Provisional
Probab=38.93 E-value=3.1e+02 Score=31.54 Aligned_cols=28 Identities=21% Similarity=0.232 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHCCceEEeeccccChH
Q 007714 396 NEFSDLMRLEIAMNGFTEVLTWILCSSK 423 (592)
Q Consensus 396 ~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~ 423 (592)
..+...+|+.|...||.|+-|..+++..
T Consensus 219 s~l~~a~r~ff~~~gF~eI~TPiit~s~ 246 (586)
T PTZ00425 219 NALAIATHLFFQSRGFLYIHTPLITTSD 246 (586)
T ss_pred HHHHHHHHHHHHHCCCEEeeCCeecccC
Confidence 4577889999999999999999998764
No 122
>PLN02603 asparaginyl-tRNA synthetase
Probab=36.71 E-value=2.9e+02 Score=31.65 Aligned_cols=29 Identities=24% Similarity=0.169 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHCCceEEeeccccChH
Q 007714 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSK 423 (592)
Q Consensus 395 ~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~ 423 (592)
..++...+|+.|...||.||-|..+++..
T Consensus 229 RS~i~~air~ff~~~gF~eV~TPiLt~s~ 257 (565)
T PLN02603 229 RNALAYATHKFFQENGFVWVSSPIITASD 257 (565)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCeecccC
Confidence 34677889999999999999999998753
No 123
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=31.43 E-value=71 Score=32.29 Aligned_cols=90 Identities=16% Similarity=0.216 Sum_probs=57.9
Q ss_pred CcCCHHHHHHHHHhcCCeEEEcCCCCCcceEEEEcCCC-C--cccCCCchhHhHHHHHhCCCCCCCCCCCCC-----CCC
Q 007714 322 VSLEAEEVTSLLNRMQLHAERSASGNNQWNINVLVPPT-R--SDVLHPCDVMEDVAIAYGYNNIPKRKPASV-----KPL 393 (592)
Q Consensus 322 ~~l~~~~i~~~L~~lg~~~~~~~~~~~~~~~~V~vP~~-R--~DI~~~~DliEEIar~yGydni~~~~p~~~-----~~~ 393 (592)
..++.++|.++.+.+|+........ . ++.-.+|.- + .+-+..++-+|+..+..||..+--..-... .+.
T Consensus 142 ~~l~K~eIr~la~~~gl~~~~~ps~--~-Cl~sr~~~g~~it~~~l~~v~~~E~~l~~~g~~~~rvr~~~~~a~ie~~~~ 218 (252)
T TIGR00268 142 FGITKKEIREIAKSLGISFPDKPSE--A-CLASRFPFGREIDEEKLKMVDEAEEVLRNAGVGQVRVRNYDNLAVIEVPED 218 (252)
T ss_pred cCCCHHHHHHHHHHcCCCccCCCCC--C-ceEeecCCCCcCCHHHHHHHHHHHHHHHHcCCCeEEEEecCCeEEEEECHH
Confidence 3578999999999999986422211 1 134444432 2 245667999999999999988754322211 111
Q ss_pred hHHHH---HHHHHHHHHHCCceEE
Q 007714 394 ALNEF---SDLMRLEIAMNGFTEV 414 (592)
Q Consensus 394 ~~~~~---~~~lr~~l~~~Gf~Ev 414 (592)
...++ ...+.+.|..+||.-|
T Consensus 219 ~~~~~~~~~~~i~~~~~~~gf~~v 242 (252)
T TIGR00268 219 ELSKLLNEAEEVRDKFKDIGFRKV 242 (252)
T ss_pred HHHHHHhhHHHHHHHHHHcCCCeE
Confidence 12222 3668889999999887
No 124
>KOG2509 consensus Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=31.00 E-value=3.2e+02 Score=30.10 Aligned_cols=156 Identities=13% Similarity=0.148 Sum_probs=88.4
Q ss_pred hHhHHHHHhCCCCCCCCCCCC-C--------CCChHHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCce
Q 007714 369 VMEDVAIAYGYNNIPKRKPAS-V--------KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV 439 (592)
Q Consensus 369 liEEIar~yGydni~~~~p~~-~--------~~~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v 439 (592)
-.+++++..||=+...-.-.+ . ...-.+.+.+.-=+.+...||.=+.+..++..+...+....+......+
T Consensus 153 ~~~~l~~~~~~~~~~~~a~vsG~r~Yyl~g~~a~LeqALi~yal~~l~~kGy~pl~~P~i~rkeVm~~cg~~~~~d~~~~ 232 (455)
T KOG2509|consen 153 HHDELVRALGFIDLERGAKVSGHRGYYLKGAGAFLEQALINYALDFLNAKGYTPLTTPDILRKEVMQKCGQLPRFDEEQY 232 (455)
T ss_pred cHHHHHHhcccccccchhhcccccceEEcCHHHHHHHHHHHHHHHHHHHcCCccccCchhhhHHHHHHhccCcCCCcceE
Confidence 347788898885543211111 1 1112334555556778899999999999999887444322222112334
Q ss_pred -eeCCCcCCcccccccchHHHHHHHHhccC---CCCCeeEEEeCcEeecCCCc---c-ccc---ccccEE-EEEEeCCCC
Q 007714 440 -VGNPRTSDFEVVRTTLMPGILKTIGHNKD---HPKPIKIYEVGDVVLLDEKK---D-VGA---SCRRRL-AALYCGANS 507 (592)
Q Consensus 440 -i~NP~s~e~~~lR~SLlpgLL~~~~~N~~---~~~~~~lFEiG~V~~~~~~~---~-~~~---~~~~~l-~~~~~g~~~ 507 (592)
+.-+- .|.--.=||=.| |.+.-.|.- ...|+|+--++++|+...++ + .|. .+..++ -++++++.-
T Consensus 233 y~ld~~-~~~~LiaTaE~p--lAa~~~~e~~~~~~lPiK~vg~S~CfR~EaGs~G~d~~GlyRVHqF~KVE~Fvit~Pe~ 309 (455)
T KOG2509|consen 233 YVLDGG-DEKYLIATAEQP--LAAYHRDEWLEEDQLPIKYVGVSRCFRAEAGSHGKDTKGLYRVHQFEKVEQFVITGPED 309 (455)
T ss_pred EeecCC-ccceeEeeccch--hhhhhcccccccccCceeeeehhHHHHHHhhhcccccccceeeeeeeeeEEEEecCcch
Confidence 44443 222222333332 233333322 24689999999999865421 1 111 122222 234677643
Q ss_pred C---HHHHHHHHHHHHHHhCCCC
Q 007714 508 G---FELIHCLVDRIMEVIGTPF 527 (592)
Q Consensus 508 ~---f~~ikg~le~ll~~lgi~~ 527 (592)
+ |+++.+.-+.+++.||+++
T Consensus 310 S~~~~eEmi~~~eef~qsLgip~ 332 (455)
T KOG2509|consen 310 SWEMLEEMINNQEEFYQSLGLPY 332 (455)
T ss_pred hHHHHHHHHHHHHHHHHHhCCce
Confidence 3 7889999999999999984
No 125
>KOG2324 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=28.03 E-value=2.9e+02 Score=29.69 Aligned_cols=121 Identities=23% Similarity=0.326 Sum_probs=72.5
Q ss_pred CCChHHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCC-CCCCce----------eeCCCcCCcccccccchHHH
Q 007714 391 KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQT-DESTAV----------VGNPRTSDFEVVRTTLMPGI 459 (592)
Q Consensus 391 ~~~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~-~~~~~v----------i~NP~s~e~~~lR~SLlpgL 459 (592)
.....+++.|.++..|.+.|-+++--..+.+.+ ..+.-++.+ .+.+.+ ..-|--+|. +--|
T Consensus 51 g~R~~~K~~~~l~~~mqs~Ga~kIslp~ls~~~-LWekTgRw~~~gsEl~rl~Dr~gkq~cL~pThEE~-------iT~l 122 (457)
T KOG2324|consen 51 GLRVLNKLCRLLDNEMQSGGAQKISLPILSSKE-LWEKTGRWDAMGSELFRLHDRKGKQMCLTPTHEED-------ITAL 122 (457)
T ss_pred hHHHHHHHHHHHHHHHHhccCeeEeecccChHH-HHHhcCcccccchhheEeeccCCCEeccCCchHHH-------HHHH
Confidence 445678899999999999999998777776655 344433321 111122 223333221 2233
Q ss_pred HHHHHhccCCCCCeeEEEeCcEeecCCCcccccccccEEEEEEeCC-----------------CCCHHHHHHHHHHHHHH
Q 007714 460 LKTIGHNKDHPKPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGA-----------------NSGFELIHCLVDRIMEV 522 (592)
Q Consensus 460 L~~~~~N~~~~~~~~lFEiG~V~~~~~~~~~~~~~~~~l~~~~~g~-----------------~~~f~~ikg~le~ll~~ 522 (592)
+.+...=..++.|+++|-||+=|+.+- +.|. +++.|+ ..+|..+...-+++++.
T Consensus 123 mat~~~lsykqlPi~vYQigrKfRDEl--------rpRf-GLlRgREFlMKDmYsFd~~~etA~qTy~~v~~aY~~iFkq 193 (457)
T KOG2324|consen 123 MATYIPLSYKQLPIRVYQIGRKFRDEL--------RPRF-GLLRGREFLMKDMYSFDSDEETAQQTYQLVDQAYDRIFKQ 193 (457)
T ss_pred HHhcCccccccCcEEeeeechhhhhcc--------Cccc-cchhhHHHHHhhhhcccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 344333223457999999999986321 1121 223332 13577888888999999
Q ss_pred hCCCCC
Q 007714 523 IGTPFV 528 (592)
Q Consensus 523 lgi~~~ 528 (592)
|++++.
T Consensus 194 L~~pfV 199 (457)
T KOG2324|consen 194 LGLPFV 199 (457)
T ss_pred cCCCeE
Confidence 999863
No 126
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=26.43 E-value=4e+02 Score=29.42 Aligned_cols=77 Identities=19% Similarity=0.204 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCce-eeCCCcCCcccccccchHHHHHHHHhccCCCCCe
Q 007714 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPI 473 (592)
Q Consensus 395 ~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v-i~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~~ 473 (592)
...+.+.+|+.+...||.||-|..+++... + .+.+.. +.- .-.+ ..| |--|.|-+-+..=. =-
T Consensus 137 rs~i~~a~~eff~~~gF~eV~tP~i~~~~~--E------Gg~elF~v~y-f~~~-a~L--tqS~QLyke~~~~a----l~ 200 (435)
T COG0017 137 RSSILRAIREFFYENGFTEVHTPIITASAT--E------GGGELFKVDY-FDKE-AYL--TQSPQLYKEALAAA----LE 200 (435)
T ss_pred HHHHHHHHHHHHHhCCcEEecCceEeccCC--C------CCceeEEEee-cCcc-eEE--ecCHHHHHHHHHHH----hC
Confidence 345778899999999999999999998653 0 111222 211 0111 222 33344433222110 15
Q ss_pred eEEEeCcEeecCCC
Q 007714 474 KIYEVGDVVLLDEK 487 (592)
Q Consensus 474 ~lFEiG~V~~~~~~ 487 (592)
|+||+|.+|+..++
T Consensus 201 rVf~igP~FRAE~s 214 (435)
T COG0017 201 RVFTIGPTFRAEKS 214 (435)
T ss_pred ceEEecCceecCCC
Confidence 79999999987643
No 127
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=24.01 E-value=1.3e+02 Score=33.68 Aligned_cols=125 Identities=18% Similarity=0.302 Sum_probs=70.0
Q ss_pred e-eeCCCcCCcccccccchHHHHHHHHhccCCCCCeeEEEeCcEeecCCCc--c--ccccc--ccEEEEEEeCCCCCHHH
Q 007714 439 V-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIKIYEVGDVVLLDEKK--D--VGASC--RRRLAALYCGANSGFEL 511 (592)
Q Consensus 439 v-i~NP~s~e~~~lR~SLlpgLL~~~~~N~~~~~~~~lFEiG~V~~~~~~~--~--~~~~~--~~~l~~~~~g~~~~f~~ 511 (592)
+ +-.|..... .+|-+|=.-.+..+.+.- +=--||+........ + .|.++ ....|+++.-.+.+|++
T Consensus 242 vGvftP~~~~~----~~L~aGeVG~~~a~iK~v---~d~~VGDTiT~~~~p~~e~LpGfk~~~P~Vf~GlyPid~~dye~ 314 (603)
T COG0481 242 VGIFTPKMVKV----DELKAGEVGYIIAGIKDV---RDARVGDTITLASNPATEPLPGFKEVKPMVFAGLYPVDSDDYED 314 (603)
T ss_pred EeeccCCcccc----ccccCCceeEEEEeeeec---ccCcccceEeccCCCccccCCCCCcCCceEEEeecccChhHHHH
Confidence 5 677754443 344455444444444422 122268877632211 1 23232 33455555556788999
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCccEEEEecCCCCccCCceEEEEECCEEEEEEEEeCHHHHH-----hCCCC----CCEE
Q 007714 512 IHCLVDRIMEVIGTPFVPVGDDTGYYIQRSDEPEFLPGRQASITHKGKHVGTFGIVHPEVLN-----NFDIS----DPCS 582 (592)
Q Consensus 512 ikg~le~ll~~lgi~~~~~~~~~~~~~~~~~~~~f~pgr~A~I~~~g~~iG~~GelhP~vl~-----~~~l~----~pv~ 582 (592)
++..++ +|.++... +.+++...... | -|-.+||+|-||=++.+ +|+++ .|.+
T Consensus 315 LrdAle----KL~LNDas------l~~E~EtS~AL--G-------fGfRcGFLGlLHmeiiqERLeREf~ldlI~TaPsV 375 (603)
T COG0481 315 LRDALE----KLQLNDAS------LTYEPETSQAL--G-------FGFRCGFLGLLHMEIIQERLEREFDLDLITTAPSV 375 (603)
T ss_pred HHHHHH----hcccccce------eeeccccchhc--c-------CceeehhhhHHHHHHHHHHHHHhhCcceEecCCce
Confidence 998877 44444322 55555433221 1 25578999999998864 67765 5777
Q ss_pred EEEEecc
Q 007714 583 FMEIDIE 589 (592)
Q Consensus 583 ~~El~l~ 589 (592)
..++.+.
T Consensus 376 ~Y~v~~~ 382 (603)
T COG0481 376 VYKVELT 382 (603)
T ss_pred EEEEEEc
Confidence 7776653
No 128
>COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=22.51 E-value=2.4e+02 Score=29.41 Aligned_cols=84 Identities=17% Similarity=0.086 Sum_probs=48.7
Q ss_pred hHHHHHHHHHHHHHHCCceEEeeccccChHHHHHHcCCCCCCCCceeeCCCcC--CcccccccchHHHHHHHHhccCCCC
Q 007714 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAVVGNPRTS--DFEVVRTTLMPGILKTIGHNKDHPK 471 (592)
Q Consensus 394 ~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~vi~NP~s~--e~~~lR~SLlpgLL~~~~~N~~~~~ 471 (592)
....+.+.+|..++..||.||=|-.|.-.-.....+.... .+ ..-|--. .--.|.||-=-.+=+-++. .
T Consensus 18 ~Ra~i~~~iR~FF~erg~lEVeTp~Ls~a~vtd~hL~~F~--Te--~~~~~~~~~~~l~L~TSPEy~mKrLLAa-----g 88 (322)
T COG2269 18 KRAAIIAAIRRFFAERGVLEVETPALSVAPVTDIHLHPFE--TE--FLGPGGAKGKPLWLHTSPEYHMKRLLAA-----G 88 (322)
T ss_pred HHHHHHHHHHHHHHHcCceEecchHhhcCCCCccceeeee--eE--EeccCccccceeeeecCcHHHHHHHHHc-----c
Confidence 3456788999999999999999988754322111110000 01 1122211 1235677765555555543 2
Q ss_pred CeeEEEeCcEeecCC
Q 007714 472 PIKIYEVGDVVLLDE 486 (592)
Q Consensus 472 ~~~lFEiG~V~~~~~ 486 (592)
.-.+|.+|+||...+
T Consensus 89 ~~~ifql~kvfRN~E 103 (322)
T COG2269 89 SGPIFQLGKVFRNEE 103 (322)
T ss_pred CCcchhhhHHHhccc
Confidence 356999999997653
Done!