RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 007714
(592 letters)
>d1jjcb5 d.104.1.1 (B:475-681) Phenyl-tRNA synthetase (PheRS) beta
subunit, PheT, central domain {Thermus thermophilus
[TaxId: 274]}
Length = 207
Score = 87.6 bits (216), Expect = 2e-20
Identities = 43/213 (20%), Positives = 82/213 (38%), Gaps = 19/213 (8%)
Query: 382 IPKRKPASVKP--LALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV 439
+P PA A +R ++ GF EV T+ ++ + D +
Sbjct: 2 LPAFFPAPDNRGVEAPYRKEQRLREVLSGLGFQEVYTYSFMDPEDARRF---RLDPPRLL 58
Query: 440 VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKP--IKIYEVGDVVLLDEKKDVGASCRRR 497
+ NP + +RT L PG+++ + N D +P ++EVG V E+ +
Sbjct: 59 LLNPLAPEKAALRTHLFPGLVRVLKENLDLDRPERALLFEVGRVFREREETHLAGLLFGE 118
Query: 498 LAAL--YCGANSGFELIHCLVDRIMEVIGTPFVPVGDDTGYYIQRSDEPEFLPGRQASIT 555
L SG+ L+ ++ + +G + ++ P PG +
Sbjct: 119 GVGLPWAKERLSGYFLLKGYLEALFARLGLA---------FRVEAQAFPFLHPGVSGRVL 169
Query: 556 HKGKHVGTFGIVHPEVLNNFDISDPCSFMEIDI 588
+G+ VG G +HPE+ ++ P E+ +
Sbjct: 170 VEGEEVGFLGALHPEIAQELEL-PPVHLFELRL 201
>d1jjcb2 a.6.1.1 (B:400-474) Domains B1 and B5 of PheRS-beta, PheT
{Thermus thermophilus [TaxId: 274]}
Length = 75
Score = 61.4 bits (149), Expect = 1e-12
Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 5/75 (6%)
Query: 309 MEVSLSYINHTIGVSLEAEEVTSLLNRMQLHAERSASGNNQWNINVLVPPTRSDVLHPCD 368
+ Y N +G S E ++L R+ E V P R D+ D
Sbjct: 5 IPFRPEYANRLLGTSYPEAEQIAILKRLGCRVEGEGPT-----YRVTPPSHRLDLRLEED 59
Query: 369 VMEDVAIAYGYNNIP 383
++E+VA GY IP
Sbjct: 60 LVEEVARIQGYETIP 74
>d1tz7a1 c.1.8.1 (A:1-485) Amylomaltase MalQ {Aquifex aeolicus
[TaxId: 63363]}
Length = 485
Score = 32.7 bits (74), Expect = 0.12
Identities = 9/65 (13%), Positives = 18/65 (27%), Gaps = 2/65 (3%)
Query: 109 QMHVKPETSSIRPYVVCAVLRDISFD--EASYNSFIDLQDKLHQNICRRRTLVAIGTHDL 166
+ E V + +F D + + + + THDL
Sbjct: 327 KNPFIAEDLGFITDEVRYLRETFKIPGSRVIEFAFYDKESEHLPHNVEENNVYYTSTHDL 386
Query: 167 DTLQG 171
++G
Sbjct: 387 PPIRG 391
>d1jjca_ d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alpha
subunit, PheS {Thermus thermophilus [TaxId: 274]}
Length = 266
Score = 32.0 bits (72), Expect = 0.18
Identities = 14/65 (21%), Positives = 21/65 (32%), Gaps = 4/65 (6%)
Query: 531 GDDTGYYIQRSDEPEFLPGRQASITHKGKH----VGTFGIVHPEVLNNFDISDPCSFMEI 586
G D+ Q P PG Q ++ +G G+VHP+V D +
Sbjct: 162 GPDSKVRFQPVYFPFVEPGAQFAVWWPEGGKWLELGGAGMVHPKVFQAVDAYRERLGLPP 221
Query: 587 DIENF 591
Sbjct: 222 AYRGV 226
>d1s4da_ c.90.1.1 (A:) Uroporphyrin-III C-methyltransferase (SUMT,
UROM, CobA) {Pseudomonas denitrificans [TaxId: 43306]}
Length = 265
Score = 29.5 bits (65), Expect = 1.2
Identities = 29/108 (26%), Positives = 39/108 (36%), Gaps = 7/108 (6%)
Query: 397 EFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLN---RQTDESTAVVGNPRTSDFEVVRT 453
+ IA V+ + I+ L R DE A V N T V+ T
Sbjct: 159 VPDRINWQGIASGSPVIVMYMAMKHIGAITANLIAGGRSPDEPVAFVCNAATPQQAVLET 218
Query: 454 TLMPGILKTIGHNKDHPKPIKIYEVGDVVLLDEKKD-VGASCRRRLAA 500
TL + P + VG+VV L D +GA R+LAA
Sbjct: 219 TL--ARAEADVAAAGLEPPAIVV-VGEVVRLRAALDWIGALDGRKLAA 263
>d3dtoa1 a.211.1.1 (A:2-213) Uncharacterized protein BH2835
{Bacillus halodurans [TaxId: 86665]}
Length = 212
Score = 28.9 bits (64), Expect = 1.5
Identities = 18/93 (19%), Positives = 32/93 (34%), Gaps = 2/93 (2%)
Query: 124 VCAVLRDISFDEASYNSFIDLQDKLHQNICRRRTLVAIGTHDLDTLQGPFTYEALPPS-- 181
++ ISF S + + Q+ R L AIG G P
Sbjct: 92 TMDIINTISFKGGHGQSLATREAMVVQDADRLDALGAIGIARTFAYSGNKGQPIYDPELP 151
Query: 182 HINFVPLKQTRDFTADELMEFYKSDLKLKKYLH 214
+ +++ R + + FY+ KLK ++
Sbjct: 152 IRETMTVEEYRHGKSTAINHFYEKLFKLKDLMN 184
>d1eswa_ c.1.8.1 (A:) Amylomaltase MalQ {Thermus aquaticus [TaxId:
271]}
Length = 500
Score = 28.5 bits (63), Expect = 2.6
Identities = 18/78 (23%), Positives = 28/78 (35%), Gaps = 15/78 (19%)
Query: 104 KDSMLQMHVKPETSSIRPYVVCAVLRDI----------SFDEASYNSFIDLQDKLHQNIC 153
++ ++ V E + V A+ +FD+ N F+ H
Sbjct: 329 QEVFGEVPVLAEDLGVITPEVEALRDRFGLPGMKVLQFAFDDGMENPFLP-----HNYPA 383
Query: 154 RRRTLVAIGTHDLDTLQG 171
R +V GTHD DT G
Sbjct: 384 HGRVVVYTGTHDNDTTLG 401
>d1obra_ c.56.5.2 (A:) Carboxypeptidase T {Thermoactinomyces
vulgaris [TaxId: 2026]}
Length = 323
Score = 28.3 bits (62), Expect = 2.9
Identities = 10/49 (20%), Positives = 18/49 (36%)
Query: 28 CFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEVPANRYDLL 76
F F E+ + ++ + E N E V+Y E Y ++
Sbjct: 271 IFAFTFEMYPTSYNPGFYPPDEVIGRETSRNKEAVLYVAEKADCPYSVI 319
>d1x1na1 c.1.8.1 (A:2-524) Amylomaltase MalQ {Potato (Solanum
tuberosum) [TaxId: 4113]}
Length = 523
Score = 27.8 bits (61), Expect = 4.7
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 154 RRRTLVAIGTHDLDTLQGPFTYEALPPSHINFV 186
+ +V GTHD DT++G ++ LP + V
Sbjct: 409 EQNQVVYTGTHDNDTIRG--WWDTLPQEEKSNV 439
>d1vhea1 b.49.3.1 (A:73-162) Hypothetical protein YsdC {Bacillus
subtilis [TaxId: 1423]}
Length = 90
Score = 25.1 bits (55), Expect = 7.9
Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 12/65 (18%)
Query: 527 FVPVGDDTGYYIQRSDEPEFLPGRQASI-THKGKHVGTFGIVHPEVLNNFDISDPCSFME 585
F VG G++ + + ++ +I T KG+ G G P +L+ +
Sbjct: 15 FQTVG---GWW------AQVMLAQRVTIVTKKGEITGVIGSKPPHILSPEARKKSVEIKD 65
Query: 586 --IDI 588
IDI
Sbjct: 66 MFIDI 70
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.137 0.400
Gapped
Lambda K H
0.267 0.0521 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,229,035
Number of extensions: 107467
Number of successful extensions: 228
Number of sequences better than 10.0: 1
Number of HSP's gapped: 226
Number of HSP's successfully gapped: 14
Length of query: 592
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 502
Effective length of database: 1,171,896
Effective search space: 588291792
Effective search space used: 588291792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.8 bits)