Query 007715
Match_columns 592
No_of_seqs 357 out of 3154
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 08:41:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007715.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007715hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vsq_A Surfactin synthetase su 100.0 4.8E-70 1.6E-74 650.7 11.5 519 11-592 299-844 (1304)
2 1ry2_A Acetyl-coenzyme A synth 100.0 3.2E-63 1.1E-67 552.9 46.1 458 114-584 19-511 (663)
3 1pg4_A Acetyl-COA synthetase; 100.0 1.3E-62 4.3E-67 547.8 43.3 452 120-585 23-503 (652)
4 4dg8_A PA1221; ANL superfamily 100.0 1.5E-57 5E-62 503.0 32.4 338 185-572 36-384 (620)
5 3etc_A AMP-binding protein; ad 100.0 8E-57 2.7E-61 494.3 36.8 398 166-585 48-461 (580)
6 3ni2_A 4-coumarate:COA ligase; 100.0 3.1E-56 1.1E-60 486.1 35.8 371 185-583 31-418 (536)
7 3g7s_A Long-chain-fatty-acid-- 100.0 2.7E-56 9.2E-61 488.0 34.5 363 186-572 29-407 (549)
8 3tsy_A Fusion protein 4-coumar 100.0 5.3E-55 1.8E-59 508.5 39.5 435 122-583 14-465 (979)
9 4fuq_A Malonyl COA synthetase; 100.0 4.4E-55 1.5E-59 473.1 35.8 365 187-584 11-384 (503)
10 3e7w_A D-alanine--poly(phospho 100.0 2.7E-55 9.4E-60 475.9 34.0 345 186-572 11-368 (511)
11 4gr5_A Non-ribosomal peptide s 100.0 1.5E-55 5.1E-60 484.1 31.6 338 186-571 85-432 (570)
12 3o83_A Peptide arylation enzym 100.0 2.1E-55 7.2E-60 480.2 32.4 375 185-584 39-424 (544)
13 1mdb_A 2,3-dihydroxybenzoate-A 100.0 1.2E-55 4E-60 481.6 29.9 370 186-584 35-415 (539)
14 3fce_A D-alanine--poly(phospho 100.0 1.2E-55 4.2E-60 478.9 28.5 347 186-572 11-369 (512)
15 3rg2_A Enterobactin synthase c 100.0 1.3E-54 4.5E-59 480.8 36.9 364 190-580 39-414 (617)
16 3r44_A Fatty acyl COA syntheta 100.0 2.3E-55 7.8E-60 476.9 29.0 364 186-584 26-398 (517)
17 3rix_A Luciferase, luciferin 4 100.0 3.7E-55 1.3E-59 479.0 30.9 376 187-584 31-424 (550)
18 1v25_A Long-chain-fatty-acid-C 100.0 1.2E-54 4.1E-59 473.9 34.5 370 186-584 28-420 (541)
19 3c5e_A Acyl-coenzyme A synthet 100.0 5.7E-54 2E-58 470.9 39.1 394 164-585 28-442 (570)
20 2d1s_A Luciferase, luciferin 4 100.0 3.7E-54 1.3E-58 470.6 35.1 370 187-584 37-426 (548)
21 3ivr_A Putative long-chain-fat 100.0 2.7E-54 9.2E-59 468.0 33.0 362 186-584 16-383 (509)
22 2v7b_A Benzoate-coenzyme A lig 100.0 8.4E-54 2.9E-58 466.4 36.7 380 173-583 23-413 (529)
23 1amu_A GRSA, gramicidin synthe 100.0 5.9E-54 2E-58 470.1 33.3 335 186-571 49-395 (563)
24 3l8c_A D-alanine--poly(phospho 100.0 3.7E-54 1.3E-58 468.4 31.0 345 186-572 14-372 (521)
25 3t5a_A Long-chain-fatty-acid-- 100.0 7.6E-55 2.6E-59 469.1 24.9 355 186-572 34-444 (480)
26 1t5h_X 4-chlorobenzoyl COA lig 100.0 1.9E-53 6.4E-58 460.7 35.7 359 186-584 12-387 (504)
27 3kxw_A Saframycin MX1 syntheta 100.0 1.1E-52 3.7E-57 464.0 29.4 351 186-571 21-422 (590)
28 3nyq_A Malonyl-COA ligase; A/B 100.0 2.1E-52 7.1E-57 452.2 26.0 344 186-583 32-389 (505)
29 3ite_A SIDN siderophore synthe 100.0 5.4E-52 1.8E-56 455.5 29.6 350 186-570 30-396 (562)
30 3ipl_A 2-succinylbenzoate--COA 100.0 1.4E-51 4.7E-56 446.0 29.7 367 185-584 10-383 (501)
31 3gqw_A Fatty acid AMP ligase; 100.0 1.4E-50 4.9E-55 445.8 32.1 364 186-584 31-447 (576)
32 3hgu_A EHPF; phenazine, antibi 100.0 1.5E-31 5.2E-36 277.3 13.4 196 353-558 88-318 (369)
33 4gs5_A Acyl-COA synthetase (AM 100.0 2.5E-30 8.4E-35 266.5 14.4 186 355-559 36-221 (358)
34 2y4o_A Phenylacetate-coenzyme 100.0 1.6E-29 5.5E-34 268.7 18.3 201 352-559 88-296 (443)
35 3qov_A Phenylacetate-coenzyme 100.0 1.9E-29 6.6E-34 267.5 18.6 201 352-559 81-289 (436)
36 2y27_A Phenylacetate-coenzyme 100.0 1.6E-28 5.4E-33 260.5 20.4 201 352-559 86-294 (437)
37 2jgp_A Tyrocidine synthetase 3 98.6 2.4E-10 8.3E-15 123.3 -11.0 132 11-150 372-513 (520)
38 1l5a_A Amide synthase, VIBH; n 98.1 8.3E-09 2.8E-13 108.5 -12.7 136 11-157 276-421 (436)
39 4hvm_A Tlmii; PSI-biology, mid 98.1 2.4E-08 8.1E-13 106.9 -10.2 133 11-153 297-467 (493)
40 2xhg_A Tyrocidine synthetase A 96.9 7.6E-06 2.6E-10 86.5 -9.8 127 11-146 307-456 (466)
41 1q9j_A PAPA5, polyketide synth 90.4 0.0094 3.2E-07 61.5 -5.6 106 23-146 297-416 (422)
42 2y27_A Phenylacetate-coenzyme 88.5 3.9 0.00013 41.9 12.7 102 188-290 87-192 (437)
43 2y4o_A Phenylacetate-coenzyme 87.7 4.5 0.00015 41.5 12.6 101 189-290 90-194 (443)
44 3qov_A Phenylacetate-coenzyme 87.6 3.8 0.00013 41.9 11.9 99 191-290 86-188 (436)
45 3rix_A Luciferase, luciferin 4 78.1 6.2 0.00021 41.8 9.1 100 355-459 34-136 (550)
46 3ivr_A Putative long-chain-fat 77.6 13 0.00045 38.7 11.4 95 354-458 19-116 (509)
47 3g7s_A Long-chain-fatty-acid-- 75.4 17 0.00057 38.3 11.6 103 354-459 32-138 (549)
48 1v25_A Long-chain-fatty-acid-C 75.3 19 0.00065 37.9 11.9 100 354-459 31-133 (541)
49 3c5e_A Acyl-coenzyme A synthet 75.2 25 0.00086 37.2 12.9 101 354-459 56-160 (570)
50 3ni2_A 4-coumarate:COA ligase; 71.5 15 0.0005 38.7 9.9 97 354-458 35-134 (536)
51 1t5h_X 4-chlorobenzoyl COA lig 71.2 25 0.00086 36.5 11.6 98 354-459 15-117 (504)
52 3hgu_A EHPF; phenazine, antibi 71.0 20 0.00067 35.5 10.3 100 189-290 89-215 (369)
53 3t5a_A Long-chain-fatty-acid-- 69.3 32 0.0011 35.2 11.9 104 354-461 37-148 (480)
54 3r44_A Fatty acyl COA syntheta 67.1 33 0.0011 35.7 11.5 95 354-456 29-126 (517)
55 1amu_A GRSA, gramicidin synthe 66.3 29 0.00099 36.7 10.9 95 354-458 52-149 (563)
56 1ry2_A Acetyl-coenzyme A synth 66.1 30 0.001 37.5 11.1 97 354-454 95-195 (663)
57 3etc_A AMP-binding protein; ad 65.5 33 0.0011 36.5 11.2 95 354-453 69-166 (580)
58 1pg4_A Acetyl-COA synthetase; 62.9 40 0.0014 36.3 11.4 96 354-453 89-187 (652)
59 4fuq_A Malonyl COA synthetase; 62.4 26 0.00088 36.4 9.5 80 375-455 28-110 (503)
60 3kxw_A Saframycin MX1 syntheta 60.9 58 0.002 34.4 12.1 101 354-460 24-130 (590)
61 4gr5_A Non-ribosomal peptide s 60.8 38 0.0013 35.8 10.6 92 354-455 88-182 (570)
62 1mdb_A 2,3-dihydroxybenzoate-A 60.4 98 0.0033 32.2 13.7 99 188-290 179-282 (539)
63 2v7b_A Benzoate-coenzyme A lig 59.6 32 0.0011 35.8 9.7 94 354-457 36-132 (529)
64 3o83_A Peptide arylation enzym 58.9 39 0.0013 35.4 10.2 90 354-453 43-135 (544)
65 2d1s_A Luciferase, luciferin 4 57.8 33 0.0011 36.1 9.4 82 375-457 52-136 (548)
66 3ipl_A 2-succinylbenzoate--COA 57.2 1.1E+02 0.0039 31.3 13.4 100 187-290 159-261 (501)
67 4b2g_A GH3-1 auxin conjugating 52.0 5.1 0.00018 42.8 1.8 31 353-383 96-127 (609)
68 3l8c_A D-alanine--poly(phospho 51.3 45 0.0015 34.6 9.1 90 354-453 17-109 (521)
69 3tsy_A Fusion protein 4-coumar 50.5 49 0.0017 37.7 9.8 95 354-456 74-171 (979)
70 3fce_A D-alanine--poly(phospho 48.6 53 0.0018 34.0 9.1 89 354-452 14-105 (512)
71 3e7w_A D-alanine--poly(phospho 46.9 1E+02 0.0035 31.7 11.0 100 188-290 140-244 (511)
72 3ite_A SIDN siderophore synthe 43.1 1.3E+02 0.0044 31.4 11.2 97 354-453 33-134 (562)
73 4dg8_A PA1221; ANL superfamily 40.3 1E+02 0.0034 33.0 9.8 89 354-452 40-131 (620)
74 3vc3_A Beta-cyanoalnine syntha 40.1 97 0.0033 30.3 8.9 93 190-289 49-142 (344)
75 4epl_A Jasmonic acid-amido syn 38.5 8.9 0.00031 40.7 1.0 31 353-383 95-126 (581)
76 3gqw_A Fatty acid AMP ligase; 38.0 1.2E+02 0.004 31.8 9.8 86 373-459 47-142 (576)
77 3nyq_A Malonyl-COA ligase; A/B 36.7 2.3E+02 0.0079 29.0 11.8 100 187-290 151-253 (505)
78 4eql_A 4-substituted benzoates 36.4 10 0.00036 40.2 1.1 30 353-382 90-120 (581)
79 3rg2_A Enterobactin synthase c 35.9 1.1E+02 0.0038 32.5 9.3 89 355-453 39-130 (617)
80 4h1h_A LMO1638 protein; MCCF-l 34.8 1.1E+02 0.0039 29.5 8.3 69 230-298 9-96 (327)
81 3tbh_A O-acetyl serine sulfhyd 34.6 1.3E+02 0.0046 29.0 8.9 78 211-289 49-127 (334)
82 3ri6_A O-acetylhomoserine sulf 31.5 2E+02 0.0068 29.0 9.9 58 230-289 118-176 (430)
83 3ezx_A MMCP 1, monomethylamine 30.6 2.9E+02 0.01 24.6 12.2 90 398-490 93-194 (215)
84 3ju7_A Putative PLP-dependent 29.8 1.4E+02 0.0049 29.3 8.3 63 223-288 67-137 (377)
85 1eg5_A Aminotransferase; PLP-d 28.2 2.3E+02 0.0079 27.2 9.6 59 230-289 86-148 (384)
86 3dzz_A Putative pyridoxal 5'-p 28.0 2.2E+02 0.0075 27.5 9.5 57 230-289 106-169 (391)
87 3sr3_A Microcin immunity prote 27.6 2.1E+02 0.0071 27.8 8.8 70 230-299 10-98 (336)
88 4e5s_A MCCFLIKE protein (BA_56 27.6 2.2E+02 0.0074 27.6 8.9 70 230-299 9-97 (331)
89 2duw_A Putative COA-binding pr 27.2 99 0.0034 25.8 5.6 52 232-284 70-121 (145)
90 3tla_A MCCF; serine protease, 27.0 1.3E+02 0.0046 29.7 7.4 70 230-299 40-128 (371)
91 3kki_A CAI-1 autoinducer synth 25.8 4.1E+02 0.014 25.9 11.1 72 230-306 140-211 (409)
92 4gs5_A Acyl-COA synthetase (AM 25.6 1.9E+02 0.0065 28.1 8.3 94 190-289 36-132 (358)
93 2e7j_A SEP-tRNA:Cys-tRNA synth 25.1 3.7E+02 0.013 25.5 10.5 57 230-289 90-156 (371)
94 2d59_A Hypothetical protein PH 22.9 1.3E+02 0.0046 24.9 5.7 52 232-284 77-128 (144)
95 3a2b_A Serine palmitoyltransfe 22.7 3.8E+02 0.013 25.9 10.1 57 230-290 124-183 (398)
96 1y81_A Conserved hypothetical 22.3 1.5E+02 0.0051 24.4 5.7 52 232-284 69-120 (138)
97 4hvk_A Probable cysteine desul 22.0 2.3E+02 0.0078 27.1 8.2 59 230-289 85-147 (382)
98 4eb5_A Probable cysteine desul 21.8 2.1E+02 0.0071 27.5 7.8 59 230-289 85-147 (382)
99 3zrp_A Serine-pyruvate aminotr 21.5 3.3E+02 0.011 26.1 9.2 75 230-306 74-152 (384)
100 1zsy_A Mitochondrial 2-enoyl t 20.8 3.2E+02 0.011 26.4 8.9 78 209-287 139-223 (357)
101 3acd_A Hypoxanthine-guanine ph 20.8 1.2E+02 0.0041 26.5 5.1 42 209-251 13-55 (181)
102 3euc_A Histidinol-phosphate am 20.1 5.6E+02 0.019 24.2 11.8 56 230-288 106-165 (367)
No 1
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=4.8e-70 Score=650.66 Aligned_cols=519 Identities=15% Similarity=0.113 Sum_probs=401.2
Q ss_pred hHHHhhCCChhHHHHHHHHHHHhhhccCCC-ChHHHHHHHHHHHhcCCCCCCchhHHHHHhhhcccccccCCC-------
Q 007715 11 EDLMKVGLKLEEAEEFDKILKQVISCSKGL-DAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIKGP------- 82 (592)
Q Consensus 11 ~~~~~~~~~~~~~~~f~~~l~~~~~~~~~~-~hq~~pf~~~lv~~l~~~r~~~~~~~plfq~~~~~~~~~~~~------- 82 (592)
-+.+|+|+.++...+|.++|++++++..++ +||++||++ |++.++ + .|+||+||++++.+...
T Consensus 299 vntlplr~~~~~~~s~~~ll~~v~~~~~~a~~hq~~p~~~-i~~~l~--~------~~lf~~~~~~~~~~~~~~~~~~~~ 369 (1304)
T 2vsq_A 299 INVVPRRVKLSEGITFNGLLKRLQEQSLQSEPHQYVPLYD-IQSQAD--Q------PKLIDHIIVFENYPLQDAKNEESS 369 (1304)
T ss_dssp CEEEEEEEECCTTCBHHHHHHHHHHHHHHHGGGTTSCHHH-HHHSSS--C------SSSCCCEEEECSSCHHHHSCCCHH
T ss_pred eeEEEEEecCCCCCcHHHHHHHHHHHHHHhhhcccCCHHH-HHHHhC--C------CcccceeEEEeecccccccccccc
Confidence 367899999999999999999999998777 999999999 999885 2 25699999998754211
Q ss_pred --CCCcCC-CccccccccHHHHHHHhCCcccccc-CCCCCcCHHHHHHHHhhCHHHHHHHHHhhccceeecccccc--cc
Q 007715 83 --PLYWFP-SLDQSKLTNLGNALEIHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCI--LD 156 (592)
Q Consensus 83 --~~~~~~-~~~~~~~~dl~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~--~~ 156 (592)
.....+ ......+|||.+.+. .++++.+.+ |+. ++|+..+++++.++|.++|+++..+++.+...+ +.
T Consensus 370 ~~g~~~~~~~~~~~~~~dL~l~~~-~~~~l~~~~~y~~-----~lf~~~~i~~l~~~~~~lL~~l~~~p~~~~~~~~~l~ 443 (1304)
T 2vsq_A 370 ENGFDMVDVHVFEKSNYDLNLMAS-PGDEMLIKLAYNE-----NVFDEAFILRLKSQLLTAIQQLIQNPDQPVSTINLVD 443 (1304)
T ss_dssp HHSEEEEEEEECCCCCSSEEEEEE-CSSSCEEEEEEET-----TTSCHHHHHHHHHHHHHHHHHHHHSTTSBGGGCCCCC
T ss_pred cCCceeEeeecccccccCeEEEEe-cCCcEEEEEEECC-----ccCCHHHHHHHHHHHHHHHHHhccCccccccccCCCC
Confidence 000000 001356788877654 356788888 988 999999999999999999999986666665543 22
Q ss_pred CCCCCCCCCccCCCCcchhhhhhccc--cccCCCCCCceEEEEeccCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCC
Q 007715 157 RTDKSKHGGTWLPGSVLNIAECCLLP--SNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKG 233 (592)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~a~~~pd~~Al~~~~~~~~~~~~~~lTy~eL~~~a~~lA~~L~~~-v~~g 233 (592)
..+.......|+.+..... ..+++. ..+++++||++|+++.++ ++||+||+++++++|++|++. +++|
T Consensus 444 ~~e~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~p~~~Av~~~~~--------~lTY~eL~~~a~~lA~~L~~~Gv~~g 514 (1304)
T 2vsq_A 444 DREREFLLTGLNPPAQAHE-TKPLTYWFKEAVNANPDAPALTYSGQ--------TLSYRELDEEANRIARRLQKHGAGKG 514 (1304)
T ss_dssp HHHHHHHHTTTSCCCCCCC-CCCHHHHHHHHHHHCTTSEEEESSSC--------EEEHHHHHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHhcCCCCCCCC-CCCHHHHHHHHHHhCCCCeEEEECCe--------eEcHHHHHHHHHHHHHHHHhcCcCCc
Confidence 2222222334554332211 122222 225689999999998877 999999999999999999999 9999
Q ss_pred CEEEEEcCCCHHHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCeeEEEEecceeccCccccchhhHhhcCCCcEEE
Q 007715 234 DAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIV 313 (592)
Q Consensus 234 d~V~i~~~~~~e~v~a~lA~~k~Ga~~vpld~~~~~~~l~~~l~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (592)
++|+|+++||+++++++|||+|+|++||||||.+|.+|+.++++++++++||++..........+ .....++
T Consensus 515 ~~V~i~~~~s~~~vv~~lailkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~~--------~~~~~~~ 586 (1304)
T 2vsq_A 515 SVVALYTKRSLELVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELP--------YTGTTLF 586 (1304)
T ss_dssp CEEEECCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTTCC--------CCSEEEE
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhccC--------CCCcEEE
Confidence 99999999999999999999999999999999999999999999999999999875421110000 0011111
Q ss_pred EcCCCCCCCCCCccCcccHHHhhccCCCCCCCCCCCCCCCCCCCeEEEEeCCCCCCCCcEEEeCCchHHHHHHHhhhhcC
Q 007715 314 LPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHID 393 (592)
Q Consensus 314 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~ 393 (592)
+.. . ..... .. ..+.....++++|||+|||||||+||||+++|+++.+. .+....++
T Consensus 587 ~~~------------~---~~~~~-~~------~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~~ 643 (1304)
T 2vsq_A 587 IDD------------Q---TRFEE-QA------SDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYMA 643 (1304)
T ss_dssp SSC------------G---GGGGS-CS------SCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSSC
T ss_pred ecc------------c---ccccc-cc------CCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhcC
Confidence 110 0 00100 00 11123456799999999999999999999999999876 55667788
Q ss_pred CCCCCEEEEecccchhchhHHHHHHHHcCCEEEEeCC--CCChhhHHHHHHHhCCcEEEccHHHHHHHHhcCcCCCCCCc
Q 007715 394 LKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG--SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWT 471 (592)
Q Consensus 394 ~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lvl~~~--~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~ 471 (592)
++++|++++.++++|+.+.+++|.+|+.|+++++.+. ..++..+.+.|++++||++.++|++++.|.+... ..++
T Consensus 644 ~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~---~~~~ 720 (1304)
T 2vsq_A 644 FSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGE---DWMK 720 (1304)
T ss_dssp CCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCS---HHHH
T ss_pred CCCCCEEEEECCccHHHHHHHHHHHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhch---hcCC
Confidence 9999999999999999999999999999999999874 3588899999999999999999999999986532 2367
Q ss_pred cccEEEEecCCCChhhHHHHHHhccCCceeccccchhcccccccCCcC---CCCccCcccccCCCceEEEECCCCCCCCC
Q 007715 472 KIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL---QPQAFGAFSTATMTAGLVILDECGVPYPD 548 (592)
Q Consensus 472 sLr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~---~~~~~~~iG~p~~~~~v~IlD~~g~~vp~ 548 (592)
+||.+++|||++++++.+++...++.++++|.||+||++++++..... ......+||+|++|++++|+|+++++||+
T Consensus 721 ~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~p~ 800 (1304)
T 2vsq_A 721 GLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISSLPIGKPISNASVYILNEQSQLQPF 800 (1304)
T ss_dssp TCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSSCSSCCCBEECTTEEEEEECTTSCBCCT
T ss_pred CccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCccccCCCCCCceeeCCCEEEEECCCcCCCCC
Confidence 899999999999999999888887778899999999998765443221 22345789999999999999999999999
Q ss_pred CCCcceeEEE-----ecccCCCchhhccccccccccccCcCCcceeccC
Q 007715 549 DQPCVGEVGL-----FPLYLGASDRLLNADHEEVYFRGMPMYKGMVHVD 592 (592)
Q Consensus 549 G~~giGel~v-----~~gY~~~~~~~~~~~~~~~~f~~~~~~~gy~~~d 592 (592)
|++ ||||| ++||+|+|+.|.. .+....|. +|-+.|+|||
T Consensus 801 G~~--GEl~i~G~~v~~GY~~~p~~T~~-~f~~~p~~--~g~~~yrTGD 844 (1304)
T 2vsq_A 801 GAV--GELCISGMGVSKGYVNRADLTKE-KFIENPFK--PGETLYRTGD 844 (1304)
T ss_dssp TCC--EEEEEEETTCCCCBTTCHHHHHH-HEEECTTS--TTCEEEEEEE
T ss_pred CCc--eEEEEeccccCccccCCcccchh-hhccCCCC--CCCeeEecCC
Confidence 995 99999 8999999998733 33333332 3456677776
No 2
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=3.2e-63 Score=552.88 Aligned_cols=458 Identities=22% Similarity=0.336 Sum_probs=362.6
Q ss_pred CCCCCcCHHHHHHHHhhCHHHHHHHHHhhccceeeccccccccCC---C-CCCCCCccCCCCcchhhhhhccccccCCCC
Q 007715 114 YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRT---D-KSKHGGTWLPGSVLNIAECCLLPSNHRRKE 189 (592)
Q Consensus 114 y~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 189 (592)
+...+.+|..+++++++++..||..+.+.. +.|.+++.++++.. . ...+..+|+.++.+|.+.+++++++ +++
T Consensus 19 ~~~~~~~y~~~~~~s~~~~~~fw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~wf~~~~~n~~~~~l~~~a--~~~ 95 (663)
T 1ry2_A 19 SHMGLQDYQRLHKESIEDPAKFFGSKATQF-LNWSKPFDKVFIPDPKTGRPSFQNNAWFLNGQLNACYNCVDRHA--LKT 95 (663)
T ss_dssp -----CHHHHHHHHHHHCHHHHHHHHHHHH-CCEEECCSCSBCBCSSSCSBCSTTCCBSTTCEECHHHHHTHHHH--TTC
T ss_pred cCCChhhHHHHHHHHhcCHHHHHHHHHhhc-CeeecCCceeecCccccccCCCCCCCcCCCCCccHHHHHHHHHh--ccC
Confidence 445556788999999999999999998862 57889999988765 2 2233368999999999999998876 779
Q ss_pred CCceEEEEeccCCCCCCceEecHHHHHHHHHHHHHHHH-hh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecCCCC
Q 007715 190 DNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALD-TM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSF 267 (592)
Q Consensus 190 pd~~Al~~~~~~~~~~~~~~lTy~eL~~~a~~lA~~L~-~~-v~~gd~V~i~~~~~~e~v~a~lA~~k~Ga~~vpld~~~ 267 (592)
||++|+++.+. +.+..+++||+||+++++++|+.|+ ++ |++||+|+|+++|++++++++|||+++|++++|+++.+
T Consensus 96 pd~~Al~~~~~--~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA~~~~Gav~vpl~~~~ 173 (663)
T 1ry2_A 96 PNKKAIIFEGD--EPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGF 173 (663)
T ss_dssp TTSEEEEEECS--STTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEECCTTS
T ss_pred CCceEEEEEcC--CCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEeeCCCC
Confidence 99999998643 1234468999999999999999999 89 99999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhcCeeEEEEecceeccCccccchhhHhhc---CC--CcEEEEcCCCC-CCCCCCccCcccHHHhhccCCC
Q 007715 268 AAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGA---AP--LKAIVLPAIGN-DVGIPLREQDLSWKDFLSSVDY 341 (592)
Q Consensus 268 ~~~~l~~~l~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 341 (592)
+.+++.++++++++++||+++...+.++.++....+.+. ++ ..++++..... ... ........|+++......
T Consensus 174 ~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 252 (663)
T 1ry2_A 174 SSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVA-FHAPRDLDWATEKKKYKT 252 (663)
T ss_dssp CHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCC-CCSSSEEEHHHHHTTSCS
T ss_pred CHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCCccc-cCCCccccHHHHHhhcCC
Confidence 999999999999999999999876666655544433322 22 23444433211 000 011223557777654321
Q ss_pred CCCCCCCCCCCCCCCCeEEEEeCCCCCCCCcEEEeCCchHHHHHH-HhhhhcCCCCCCEEEEecccchhchh-HHHHHHH
Q 007715 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA-EGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSF 419 (592)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~-~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~L 419 (592)
..+.....++|++||+|||||||+||||+++|++++.... .....++++++|++++.++++|+.+. +.++.+|
T Consensus 253 -----~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L 327 (663)
T 1ry2_A 253 -----YYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPL 327 (663)
T ss_dssp -----CCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHHHHHTTHHHH
T ss_pred -----CCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEEcCCcHHhhhhHHHHHHHH
Confidence 1223345679999999999999999999999999876553 44456889999999999999999998 7789999
Q ss_pred HcCCEEEEeCCC---CChhhHHHHHHHhCCcEEEccHHHHHHHHhcCc--CCCCCCccccEEEEecCCCChhhHHHHHHh
Q 007715 420 LNGATLALYQGS---PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSK 494 (592)
Q Consensus 420 ~~G~~lvl~~~~---~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~--~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~ 494 (592)
++|++++++++. +++..+++.|++++||+++++|++++.|.+... ....++++||.+++|||++++++++++.+.
T Consensus 328 ~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~ 407 (663)
T 1ry2_A 328 LYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEK 407 (663)
T ss_dssp HHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCCHHHHHHHHHT
T ss_pred HhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEEEEEcCCCCHHHHHHHHHH
Confidence 999999999753 478899999999999999999999999987653 345678999999999999999999999887
Q ss_pred cc--CCceeccccchhcccccccCCc--CCCCccCcccccCCCceEEEECC-CCCCCCC-CCCcceeEEE-------ecc
Q 007715 495 AW--YNAIIESCGGTELSSAYIQGSL--LQPQAFGAFSTATMTAGLVILDE-CGVPYPD-DQPCVGEVGL-------FPL 561 (592)
Q Consensus 495 ~~--~~~l~n~YG~TE~~~~~~~~~~--~~~~~~~~iG~p~~~~~v~IlD~-~g~~vp~-G~~giGel~v-------~~g 561 (592)
++ .++++|.||+||++++++.... ..+.+.+++|+|++|++++|+|+ +|+++|. |+ +|||+| ++|
T Consensus 408 ~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g~--~Gel~i~g~~p~~~~g 485 (663)
T 1ry2_A 408 IGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHA--EGVLAVKAAWPSFART 485 (663)
T ss_dssp TSCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSC--EEEEEESSCCTTSCCE
T ss_pred hCCCCceEEEeECCccccCeeeccCCCCCcccCCCccccCcCCCeEEEEcCCCCCcCCCCCc--ceEEEEecCCCchhcc
Confidence 75 3789999999999865554332 23456789999999999999998 9999998 88 599998 579
Q ss_pred cCCCchhhccccc---cccccccCcC
Q 007715 562 YLGASDRLLNADH---EEVYFRGMPM 584 (592)
Q Consensus 562 Y~~~~~~~~~~~~---~~~~f~~~~~ 584 (592)
|+|+|+++....+ .++|.+||-+
T Consensus 486 y~~~~~~~~~~~~~~~~g~y~TGDlg 511 (663)
T 1ry2_A 486 IWKNHDRYLDTYLNPYPGYYFTGDGA 511 (663)
T ss_dssp ETTCHHHHHHHHTSSSTTSEEEEEEE
T ss_pred cccChHHHHHhhhcCCCCEEEcCCEE
Confidence 9999987744322 3344455443
No 3
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=1.3e-62 Score=547.76 Aligned_cols=452 Identities=25% Similarity=0.370 Sum_probs=359.1
Q ss_pred CHHHHHHHHhhCHHHHHHHHHhhccceeeccccccccCCCC-CCCCCccCCCCcchhhhhhccccccCCCCCCceEEEEe
Q 007715 120 SFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDK-SKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWR 198 (592)
Q Consensus 120 ~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~pd~~Al~~~ 198 (592)
+|..+.+++++++..||..+++. +.|.+++.++++.... ..+...|++++.+|...+++++++ +++||++|+++.
T Consensus 23 ~y~~l~~~~~~~p~~~w~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~wf~~~~~n~~~~~l~~~a--~~~pd~~Al~~~ 98 (652)
T 1pg4_A 23 QYETKYKQSINDPDTFWGEQGKI--LDWITPYQKVKNTSFAPGNVSIKWYEDGTLNLAANCLDRHL--QENGDRTAIIWE 98 (652)
T ss_dssp HHHHHHHHHHHCHHHHHHHHGGG--SCCSBCCSCCEEEECCTTCCEEEESTTCEECHHHHHTGGGH--HHHTTSEEEEEE
T ss_pred HHHHHHHHHhcCHHHHHHHHHhh--CceecCCcccccCccccCCCCCEECCCCChhHHHHHHHHHh--ccCCCceEEEEE
Confidence 35778899999999999999876 5687888888765321 133568999999999999998875 678999999985
Q ss_pred ccCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHH
Q 007715 199 EDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLR 277 (592)
Q Consensus 199 ~~~~~~~~~~~lTy~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~v~a~lA~~k~Ga~~vpld~~~~~~~l~~~l~ 277 (592)
+. +.+..+++||+||+++++++|++|+++ |++||+|+|+++|++++++++|||+++|++++|+++.++.+++.++++
T Consensus 99 ~~--~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~Gav~vpl~~~~~~~~l~~~l~ 176 (652)
T 1pg4_A 99 GD--DTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCII 176 (652)
T ss_dssp CS--STTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHH
T ss_pred cC--CCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHH
Confidence 42 123446899999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred hcCeeEEEEecceeccCccccchhhHhh---cCC----CcEEEEcCCCCCCCCCCccCcccHHHhhccCCCCCCCCCCCC
Q 007715 278 VSKAKGIFTQDFILRGGRKFPLYSKVLG---AAP----LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSP 350 (592)
Q Consensus 278 ~~~~~~iv~~~~~~~~~~~~~~~~~~~~---~~~----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (592)
++++++||+++.....++.++....+.+ ..+ ..++++...+.... ........|++++..... ....
T Consensus 177 ~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----~~~~ 250 (652)
T 1pg4_A 177 DSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDID-WQEGRDLWWRDLIEKASP-----EHQP 250 (652)
T ss_dssp HHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCC-CCBTTEEEHHHHHTTSCS-----CCCC
T ss_pred hcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCccc-ccCCCceeHHHHHhhcCC-----CCCc
Confidence 9999999999987665555544433322 221 23444432221100 001123457777654321 1122
Q ss_pred CCCCCCCeEEEEeCCCCCCCCcEEEeCCchHHHHHH-HhhhhcCCCCCCEEEEecccchhchh-HHHHHHHHcCCEEEEe
Q 007715 351 VYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA-EGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGATLALY 428 (592)
Q Consensus 351 ~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~-~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~L~~G~~lvl~ 428 (592)
....++|++||+|||||||+||||+++|++++.... .....++++++|++++.++++|+.+. +.++.+|++|++++++
T Consensus 251 ~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~ 330 (652)
T 1pg4_A 251 EAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMF 330 (652)
T ss_dssp CCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEE
T ss_pred cccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEE
Confidence 345679999999999999999999999999876553 44556889999999999999999998 7789999999999999
Q ss_pred CCC---CChhhHHHHHHHhCCcEEEccHHHHHHHHhcCc--CCCCCCccccEEEEecCCCChhhHHHHHHhcc--CCcee
Q 007715 429 QGS---PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKAW--YNAII 501 (592)
Q Consensus 429 ~~~---~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~--~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~--~~~l~ 501 (592)
++. +++..+++.|++++||+++++|++++.|.+... ....++++||.+++|||++++++++++.+.++ .++++
T Consensus 331 ~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~ 410 (652)
T 1pg4_A 331 EGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVV 410 (652)
T ss_dssp CSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEE
T ss_pred CCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEE
Confidence 753 478899999999999999999999999998653 34567899999999999999999999988765 37899
Q ss_pred ccccchhcccccccCCc-CCCCccCcccccCCCceEEEECCCCCCCCCCCCcceeEEE-------ecccCCCchhhcccc
Q 007715 502 ESCGGTELSSAYIQGSL-LQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-------FPLYLGASDRLLNAD 573 (592)
Q Consensus 502 n~YG~TE~~~~~~~~~~-~~~~~~~~iG~p~~~~~v~IlD~~g~~vp~G~~giGel~v-------~~gY~~~~~~~~~~~ 573 (592)
|.||+||++++++...+ ..+.+.+++|+|++|++++|+|++|+++|.|+ +|||+| ++||+|+|+++.+..
T Consensus 411 ~~YG~TE~~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d~~g~~v~~g~--~GEl~i~g~~p~~~~gY~~~~e~~~~~~ 488 (652)
T 1pg4_A 411 DTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGAT--EGNLVITDSWPGQARTLFGDHERFEQTY 488 (652)
T ss_dssp EEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEECTTCCBCCSSE--EEEEEECSCCTTCCCEETTCHHHHHHHH
T ss_pred ccccCcccccceecCCCCCcCccCCccccCcCCCeEEEECCCCCCcCCCc--eEEEEEccCCCchhhhhcCCHHHHHhhh
Confidence 99999999875554332 22456789999999999999999999999998 599998 578999998774432
Q ss_pred c---cccccccCcCC
Q 007715 574 H---EEVYFRGMPMY 585 (592)
Q Consensus 574 ~---~~~~f~~~~~~ 585 (592)
+ .++|.+||-++
T Consensus 489 ~~~~~g~y~TGDlg~ 503 (652)
T 1pg4_A 489 FSTFKNMYFSGDGAR 503 (652)
T ss_dssp HSSSTTSEEEEEEEE
T ss_pred hhcCCCEEECCcEEE
Confidence 2 33444554443
No 4
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=1.5e-57 Score=503.05 Aligned_cols=338 Identities=17% Similarity=0.137 Sum_probs=282.1
Q ss_pred cCCCCCCceEEEEeccCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEec
Q 007715 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (592)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTy~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~v~a~lA~~k~Ga~~vpl 263 (592)
+++++||++|+++.++ ++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+|+|++||||
T Consensus 36 ~a~~~Pd~~Av~~~~~--------~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~lailkaGa~~vpl 107 (620)
T 4dg8_A 36 MAALHPHREAIRDRFG--------SVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAILLSGHHYLYI 107 (620)
T ss_dssp HHHHCTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHHHHHTTCEEEEC
T ss_pred HHHhCCCCeEEEcCCC--------cCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEee
Confidence 4588999999999887 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEEecceeccCccccchhhHhhcCCCcEEEEcCCCCCCCCCCccCcccHHHhhccCCCCC
Q 007715 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (592)
Q Consensus 264 d~~~~~~~l~~~l~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (592)
||.+|.+++.++++++++++||+++........ . ... .+..... .
T Consensus 108 d~~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~----------~--~~~------------------~~~~~~~---~-- 152 (620)
T 4dg8_A 108 DLKQPAAWNAELCRQVDCRLILDCSTTPTPANG----------L--PCV------------------PVRHLPA---A-- 152 (620)
T ss_dssp CTTSCHHHHHHHHHHHTEEEEEECCSSCCCCTT----------S--CEE------------------EGGGCCC---C--
T ss_pred CccChHHHHHHHHHhCCCcEEEecCcccccccC----------C--cee------------------eeccCCc---C--
Confidence 999999999999999999999976542110000 0 000 0110000 0
Q ss_pred CCCCCCCCCCCCCCeEEEEeCCCCCCCCcEEEeCCchHHHHHHHhhhhcCCCCCCEEEEecccchhchhHHHHHHHHcCC
Q 007715 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGA 423 (592)
Q Consensus 344 ~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~ 423 (592)
..........++++|||+|||||||+||||+++|+++.+.+.+ ...+++.++|++++.+|++|+.+++++|.+|+.|+
T Consensus 153 -~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~ 230 (620)
T 4dg8_A 153 -PASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGG 230 (620)
T ss_dssp -CCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTC
T ss_pred -CccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCC
Confidence 0111222345799999999999999999999999999877665 45678899999999999999999999999999999
Q ss_pred EEEEeC-CCCChhhHHHHHHHhCCcEEEccHHHHHHHHhcCcCCCCCCccccEEEEecCCCChhhHHHHHHhccCCceec
Q 007715 424 TLALYQ-GSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIE 502 (592)
Q Consensus 424 ~lvl~~-~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~~~~l~n 502 (592)
++++.+ ...++..+.++|+++++|++.++|++++.|.+.. ..++++||.+++|||++++++.+++...+++++++|
T Consensus 231 ~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~---~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n 307 (620)
T 4dg8_A 231 CCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLD---PDCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVN 307 (620)
T ss_dssp EEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHC---GGGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEE
T ss_pred EEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcC---hhhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEe
Confidence 999975 3458899999999999999999999999998754 235789999999999999998888887777889999
Q ss_pred cccchhcccccccCCc---CCCCccCcccccCCCceEEEECCCCCC-CCCCCCcceeEEE-----ecccCCCchhhccc
Q 007715 503 SCGGTELSSAYIQGSL---LQPQAFGAFSTATMTAGLVILDECGVP-YPDDQPCVGEVGL-----FPLYLGASDRLLNA 572 (592)
Q Consensus 503 ~YG~TE~~~~~~~~~~---~~~~~~~~iG~p~~~~~v~IlD~~g~~-vp~G~~giGel~v-----~~gY~~~~~~~~~~ 572 (592)
.||+||++++++.... .......++|+|++|++++|+|+++++ +|+|++ |||+| ++||+|+|+.|...
T Consensus 308 ~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~~~~g~~--GEl~i~G~~v~~GY~~~p~~t~~~ 384 (620)
T 4dg8_A 308 GYGPTENTTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLDEHGQEIAEPDRA--GEIVAFGAGLAQGYRNDAARTRAS 384 (620)
T ss_dssp EECCGGGCSCSEEEECCTGGGGSSSCCCBEECTTEEEEEECTTSCBCCSSSCC--EEEEEEETTCCSEETTCHHHHHHH
T ss_pred eEchhhhhhheEEEeccccccCCCCCCceecccCcEEEEECccCCCCCCCCCc--eEEEEeccccccccCCChhhhhhh
Confidence 9999999875443222 122345799999999999999999988 789995 99999 89999999987443
No 5
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=8e-57 Score=494.28 Aligned_cols=398 Identities=16% Similarity=0.153 Sum_probs=314.5
Q ss_pred ccCCCCcchhhhhhccccccCCCCCCceEEEEeccCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCH
Q 007715 166 TWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTV 244 (592)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~lTy~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~ 244 (592)
.|......|....++++++ +++||++|+++.+. .+..+++||+||+++++++|++|+++ |++||+|+|+++|++
T Consensus 48 ~~~~~~~~n~~~~~l~~~a--~~~pd~~Al~~~~~---~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~ 122 (580)
T 3etc_A 48 KILVPENFNFAYDVVDVYA--RDSPEKLAMIWCDD---YGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRY 122 (580)
T ss_dssp CBCCCSSCCHHHHTHHHHH--HHCTTCEEEEEEES---SSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCT
T ss_pred CCCCcccchHHHHHHHHHH--hhCCCCEEEEEEcC---CCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCH
Confidence 4555666788777777765 78999999998543 13456999999999999999999999 999999999999999
Q ss_pred HHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCeeEEEEecceeccCccccchhhHhhcCC---CcEEEEcCCCCCC
Q 007715 245 RAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP---LKAIVLPAIGNDV 321 (592)
Q Consensus 245 e~v~a~lA~~k~Ga~~vpld~~~~~~~l~~~l~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~ 321 (592)
++++++|||+|+|+++||+++.++.+++.++++++++++||++.+.. .......+...++ ...+.+...
T Consensus 123 e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~---- 194 (580)
T 3etc_A 123 DFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDD----VPEQVDEAHAECGDIPLKKAKVGGD---- 194 (580)
T ss_dssp HHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTT----HHHHHHHHHHHHCSCCCEEEEESSS----
T ss_pred HHHHHHHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchh----HHHHHHHHhhhCCCcceEEEEeCCc----
Confidence 99999999999999999999999999999999999999999987531 0112222222222 233333221
Q ss_pred CCCCccCcccHHHhhccCCCCCCCCCCCCCCCCCCCeEEEEeCCCCCCCCcEEEeCCchHHHHHHHhhhhcCCCCCCEEE
Q 007715 322 GIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYC 401 (592)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l 401 (592)
...+...+.+........ ...........++|+|||+|||||||+||||+++|++++..+......+++.++++++
T Consensus 195 ---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (580)
T 3etc_A 195 ---VLEGWIDFRKELEESSPI-FERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHY 270 (580)
T ss_dssp ---CCTTCEEHHHHHHHSCSC-CCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEEE
T ss_pred ---cccccccHHHHHhhCCcc-cccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCCceEE
Confidence 112345566655543320 0001111245679999999999999999999999999888777666667889999999
Q ss_pred EecccchhchhHH-HHHHHHcCCEEEEeC-CCCChhhHHHHHHHhCCcEEEccHHHHHHHHhcCcCCCCCCccccEEEEe
Q 007715 402 WPTNLGWVMGPVI-LFSSFLNGATLALYQ-GSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAST 479 (592)
Q Consensus 402 ~~~~~~~~~~~~~-~~~~L~~G~~lvl~~-~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~v~~g 479 (592)
+.++++|+.+.+. ++.+++.|+++++.+ ..+++..+++.|++++||++.++|++++.|.+.. ....++++||.+++|
T Consensus 271 ~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~-~~~~~l~~lr~i~~g 349 (580)
T 3etc_A 271 TVADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED-LSHYNFSTLKYAVVA 349 (580)
T ss_dssp ECCCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSC-C---CCTTCCEEEEC
T ss_pred EeCChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcc-cccCCCccceEEEEc
Confidence 9999999998865 788999999999985 4678999999999999999999999999998763 345678999999999
Q ss_pred cCCCChhhHHHHHHhccCCceeccccchhcccccccCCcCCCCccCcccccCCCceEEEECCCCCCCCCCCCcceeEEEe
Q 007715 480 GETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF 559 (592)
Q Consensus 480 Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~v~IlD~~g~~vp~G~~giGel~v~ 559 (592)
||++++++.+++.+.++ ++++|.||+||+++.++. .+....+.+++|+|++|++++|+|++|++||+|+. |||+|.
T Consensus 350 Ge~l~~~~~~~~~~~~g-~~i~~~YG~TE~~~~~~~-~~~~~~~~~~~G~p~~~~~v~ivd~~g~~~~~g~~--GEl~v~ 425 (580)
T 3etc_A 350 GEPLNPEVFNRFLEFTG-IKLMEGFGQTETVVTIAT-FPWMEPKPGSIGKPTPGYKIELMDRDGRLCEVGEE--GEIVIN 425 (580)
T ss_dssp SSCCCHHHHHHHHHHHS-CCCEEEECCTTSSCCEEC-CTTSCCCTTCCBEECTTCEEEEECTTSCBCCTTCC--EEEEEE
T ss_pred cCCCCHHHHHHHHHHhC-CeEecccccccccceeec-CCCCCCCCCccccCCCCCEEEEECCCCCCCCCCCc--eEEEEe
Confidence 99999999999887764 899999999999765433 33335567899999999999999999999999995 999983
Q ss_pred ----------cccCCCchhhccccccccccccCcCC
Q 007715 560 ----------PLYLGASDRLLNADHEEVYFRGMPMY 585 (592)
Q Consensus 560 ----------~gY~~~~~~~~~~~~~~~~f~~~~~~ 585 (592)
+||+++|+.+......+||-+||-++
T Consensus 426 ~~~g~~~~~~~gY~~~p~~t~~~f~~gwy~TGDlg~ 461 (580)
T 3etc_A 426 TMEGKPVGLFVHYGKDPERTEETWHDGYYHTGDMAW 461 (580)
T ss_dssp CTTCCCTTCCCEETTCHHHHHHHEETTEEEEEEEEE
T ss_pred cCCCCCCeeeccccCCHhHHHhhcCCCEEecCcEEE
Confidence 58999999885544444454555443
No 6
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=3.1e-56 Score=486.07 Aligned_cols=371 Identities=19% Similarity=0.231 Sum_probs=301.0
Q ss_pred cCCCCCCceEEEEeccCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEec
Q 007715 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (592)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTy~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~v~a~lA~~k~Ga~~vpl 263 (592)
+++++||++|+++.+.+ +++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 31 ~a~~~p~~~a~~~~~~~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~la~~~~Gav~vpl 104 (536)
T 3ni2_A 31 NLSNHSSKPCLINGANG------DVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAA 104 (536)
T ss_dssp TGGGSTTSEEEEETTTC------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEEC
T ss_pred HhhcCCCceEEEECCCC------CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCEEecc
Confidence 34789999999986321 3899999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEEecceeccCccccchhhHhhcCCCcEEEEcCCCCCCCCCCccCcccHHHhhccCCCCC
Q 007715 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (592)
Q Consensus 264 d~~~~~~~l~~~l~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (592)
+|.++.+++.+++++++++++|+++... +....+.......++.+... ..+...++++......
T Consensus 105 ~~~~~~~~l~~~l~~~~~~~~i~~~~~~------~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~-- 168 (536)
T 3ni2_A 105 NPFSTPAELAKHAKASRAKLLITQACYY------EKVKDFARESDVKVMCVDSA--------PDGCLHFSELTQADEN-- 168 (536)
T ss_dssp CTTCCHHHHHHHHHHHTEEEEEECGGGT------HHHHHHHHHHTCEEEESSCC--------CTTCEETHHHHTSCGG--
T ss_pred CCCCCHHHHHHHHHhcCCEEEEEChHHH------HHHHHHHhhcCceEEEecCC--------CCCccCHHHHhhcccc--
Confidence 9999999999999999999999987542 22222222222233333211 1233445555543221
Q ss_pred CCCCCCCCCCCCCCeEEEEeCCCCCCCCcEEEeCCchHHHHHHHhhh----hcCCCCCCEEEEecccchhchh-HHHHHH
Q 007715 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA----HIDLKVGDVYCWPTNLGWVMGP-VILFSS 418 (592)
Q Consensus 344 ~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~----~~~~~~~d~~l~~~~~~~~~~~-~~~~~~ 418 (592)
..+.....++|+|||+|||||||+||||+++|+++++.+.+... .+.+.++|++++.+|++|+.++ ..++.+
T Consensus 169 ---~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~ 245 (536)
T 3ni2_A 169 ---EAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCG 245 (536)
T ss_dssp ---GCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHHHTHHHH
T ss_pred ---ccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHHHHHHHH
Confidence 12233456899999999999999999999999999877665432 4568899999999999999998 457889
Q ss_pred HHcCCEEEEeCCCCChhhHHHHHHHhCCcEEEccHHHHHHHHhcCcCCCCCCccccEEEEecCCCChhhHHHHHHhccCC
Q 007715 419 FLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYN 498 (592)
Q Consensus 419 L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~~~ 498 (592)
|..|+++++.+ ..++..+++.|+++++|++.++|+++..|++.......++++||.+++|||++++++.+++.+.++++
T Consensus 246 l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~ 324 (536)
T 3ni2_A 246 LRVGAPILIMP-KFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQA 324 (536)
T ss_dssp HHHTCCEEECS-SCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGGSCCTTCCEEEEESSCCCHHHHHHHHHHCTTS
T ss_pred HhcCCEEEEcC-CCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcccccCCCccceEEEECCCCCCHHHHHHHHHHCCCC
Confidence 99999999987 57889999999999999999999999999988766667789999999999999999999999998889
Q ss_pred ceeccccchhcccccccCC----cCCCCccCcccccCCCceEEEEC-CCCCCCCCCCCcceeEEE-----ecccCCCchh
Q 007715 499 AIIESCGGTELSSAYIQGS----LLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-----FPLYLGASDR 568 (592)
Q Consensus 499 ~l~n~YG~TE~~~~~~~~~----~~~~~~~~~iG~p~~~~~v~IlD-~~g~~vp~G~~giGel~v-----~~gY~~~~~~ 568 (592)
+++|.||+||++..++... .......+++|+|++|++++|+| ++|+++|+|++ |||+| ++||+|+|+.
T Consensus 325 ~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~--GEl~v~g~~v~~GY~~~p~~ 402 (536)
T 3ni2_A 325 RLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQP--GEICIRGDQIMKGYLNDPEA 402 (536)
T ss_dssp EEEEEEECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCCTTCC--EEEEEESTTSCSEETTCHHH
T ss_pred CccccccccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCCCCCCc--cEEEEeCcccchhhcCChhH
Confidence 9999999999986543321 12234568999999999999999 67999999995 99999 8999999998
Q ss_pred hcccccccccc-ccCc
Q 007715 569 LLNADHEEVYF-RGMP 583 (592)
Q Consensus 569 ~~~~~~~~~~f-~~~~ 583 (592)
+......+.|| +||-
T Consensus 403 t~~~~~~~g~~~TGDl 418 (536)
T 3ni2_A 403 TSRTIDKEGWLHTGDI 418 (536)
T ss_dssp HHHHBCTTSCEEEEEE
T ss_pred HHhhccCCCceEcccE
Confidence 85554344444 4443
No 7
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=2.7e-56 Score=487.96 Aligned_cols=363 Identities=16% Similarity=0.116 Sum_probs=298.2
Q ss_pred CCCCCCceEEEEeccCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecC
Q 007715 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (592)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTy~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~v~a~lA~~k~Ga~~vpld 264 (592)
++++||++|+++.+.....+..+++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|+++||||
T Consensus 29 a~~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~ 108 (549)
T 3g7s_A 29 AEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMTIYALWRVAATPVPIN 108 (549)
T ss_dssp HHHHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECC
T ss_pred HHhCCCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCCEEEccC
Confidence 47899999999987321222335999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEEecceeccCccccchhhHhhcCCCcEEEEcCCCCCCCCCCccCcccHHHhhccCCCCCC
Q 007715 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 344 (592)
Q Consensus 265 ~~~~~~~l~~~l~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (592)
|.++.+++.++++++++++||+++... +.............+++.. .....+.++......
T Consensus 109 ~~~~~~~l~~il~~~~~~~~i~~~~~~------~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~--- 169 (549)
T 3g7s_A 109 PMYKSFELEHILNDSEATTLVVHSMLY------ENFKPVLEKTGVERVFVVG----------GEVNSLSEVMDSGSE--- 169 (549)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEEGGGH------HHHHHHHTTSCCCEEEEET----------CSSSCHHHHHHHSCS---
T ss_pred CCCCHHHHHHHHHhcCCCEEEEChHHH------HHHHHHHhhCCCcEEEEeC----------CCCcCHHHHHhcCcc---
Confidence 999999999999999999999998542 2222333333322222221 123346666554332
Q ss_pred CCCCCCCCCC-CCCeEEEEeCCCCCCCCcEEEeCCchHHHHHHHhhhhcCCCCCCEEEEecccchhchhHHHHHHHHcCC
Q 007715 345 PNYYSPVYNP-VDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGA 423 (592)
Q Consensus 345 ~~~~~~~~~~-~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~ 423 (592)
........ ++++|||+|||||||+||||+++|+++.+.+.+....++++++|++++.+|++|+.++..++.++..|+
T Consensus 170 --~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~ 247 (549)
T 3g7s_A 170 --DFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAEFGLVNLMVTVGN 247 (549)
T ss_dssp --CCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECCSCTTSHHHHHHHTTHHHHCC
T ss_pred --ccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEEeCcHHHHHHHHHHHHHHhcCc
Confidence 11122233 389999999999999999999999999998888888889999999999999999999877888999999
Q ss_pred EEEEeCCCCChhhHHHHHHHhCCcEEEccHHHHHHHHhcCcCC--CCCCccccEEEEecCCCChhhHHHHHHh----cc-
Q 007715 424 TLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLE--GLDWTKIRSFASTGETSNVDDDLWLSSK----AW- 496 (592)
Q Consensus 424 ~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~--~~~l~sLr~v~~gGe~l~~~~~~~~~~~----~~- 496 (592)
++++.+ .+++..+++.|+++++|+++++|+++..|++..... ..++++||.+++|||++++++.+++.+. ++
T Consensus 248 ~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~ 326 (549)
T 3g7s_A 248 EYVVMG-MFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNN 326 (549)
T ss_dssp EEEEES-SCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSC
T ss_pred eEEEcC-CCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCCccceeEEEeCCccCCHHHHHHHHHHHHhhcCC
Confidence 999987 678899999999999999999999999998764332 2568999999999999999999888776 33
Q ss_pred -CCceeccccchhcccccccCCcCCCCccCcccccCCCceEEEEC-CCCCCCCCCCCcceeEEE-----ecccCCCchhh
Q 007715 497 -YNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-----FPLYLGASDRL 569 (592)
Q Consensus 497 -~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~v~IlD-~~g~~vp~G~~giGel~v-----~~gY~~~~~~~ 569 (592)
.++++|.||+||++++++...........++|+|++|++++|+| ++|+++|+|++ |||+| ++||+|+|+.+
T Consensus 327 ~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~--GEl~v~g~~v~~GY~~~~~~t 404 (549)
T 3g7s_A 327 PRLRHNQIWGMTEACPMVTTNPPLRLDKSTTQGVPMSDIELKVISLEDGRELGVGES--GEIVIRGPNIFKGYWKREKEN 404 (549)
T ss_dssp TTCEEEEEEECGGGSSEEEECCGGGGGGTTSCCEECTTCEEEEECSSSCCEECTTCC--EEEEEESTTSCSEETTCTTGG
T ss_pred ccccccceEeccccchhhhcCCccccCcCCCccccCCCCEEEEEeCCCCcCCCCCCc--eEEEEECcchhhhhCCChhhh
Confidence 37899999999998765554444445678999999999999999 89999999995 99999 79999999987
Q ss_pred ccc
Q 007715 570 LNA 572 (592)
Q Consensus 570 ~~~ 572 (592)
...
T Consensus 405 ~~~ 407 (549)
T 3g7s_A 405 QEC 407 (549)
T ss_dssp GTS
T ss_pred hhh
Confidence 443
No 8
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=5.3e-55 Score=508.53 Aligned_cols=435 Identities=17% Similarity=0.180 Sum_probs=307.3
Q ss_pred HHHHHHHhhCHHHHHHHHHhhccceeeccccccccCCCCCCCCCccCCCCcchhhhhhccccccCCCCCCceEEEEeccC
Q 007715 122 RLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDR 201 (592)
Q Consensus 122 ~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~pd~~Al~~~~~~ 201 (592)
++.+..+++++..++..+++.+...+........-.... .........+.. ..+.+ +++++||++|+++.+.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~p~~~tl~-~~l~~--~a~~~pd~~Al~~~~~~ 86 (979)
T 3tsy_A 14 LVPRGSHMARMAPQEQAVSQVMEKQSNNNNSDVIFRSKL----PDIYIPNHLSLH-DYIFQ--NISEFATKPCLINGPTG 86 (979)
T ss_dssp -------------------------------CCCBCCSS----CCCCCCTTSCHH-HHHTT--TGGGTTTSEEEEETTTC
T ss_pred cccCcchhhhhhhHHHHHHHhhhhcccCCCCCceeecCC----CCCCCCCCCCHH-HHHHH--HHHhCCCCeEEEECCCC
Confidence 889999999999999999888754443332222111100 000001112222 23333 34889999999986321
Q ss_pred CCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcC
Q 007715 202 CDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSK 280 (592)
Q Consensus 202 ~~~~~~~~lTy~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~v~a~lA~~k~Ga~~vpld~~~~~~~l~~~l~~~~ 280 (592)
+++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+|+|+++||+||.+|.+++.+++++++
T Consensus 87 ------~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~ 160 (979)
T 3tsy_A 87 ------HVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASN 160 (979)
T ss_dssp ------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHT
T ss_pred ------cEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcC
Confidence 3899999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEecceeccCccccchhhHhhcCCCcEEEEcCCCCCCCCCCccCcccHHHhhccCCCCCCCCCCCCCCCCCCCeEE
Q 007715 281 AKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVN 360 (592)
Q Consensus 281 ~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 360 (592)
+++||+++.+. +....+.......++.+.... ......+...|.++...... .....+.....++|+||
T Consensus 161 ~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~d~a~ 229 (979)
T 3tsy_A 161 TKLIITEARYV------DKIKPLQNDDGVVIVCIDDNE---SVPIPEGCLRFTELTQSTTE--ASEVIDSVEISPDDVVA 229 (979)
T ss_dssp EEEEEECSTTT------TTSHHHHHTSCCEEEECCCCT---TSCCCTTEEEGGGTSSCCSG--GGGGSCCSCCCTTSEEE
T ss_pred CeEEEEChHHH------HHHHHHhhcCCceEEEeCCcc---cccCCcccccHHHHhhcccc--ccccCCcCCCCccceEE
Confidence 99999998643 223333322222333332211 11112233445555433221 00112233457899999
Q ss_pred EEeCCCCCCCCcEEEeCCchHHHHHHHhhh----hcCCCCCCEEEEecccchhchh-HHHHHHHHcCCEEEEeCCCCChh
Q 007715 361 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWA----HIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGATLALYQGSPLER 435 (592)
Q Consensus 361 iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~----~~~~~~~d~~l~~~~~~~~~~~-~~~~~~L~~G~~lvl~~~~~~~~ 435 (592)
|+|||||||+||||+++|+++++.+.+... .+.+.++|++++..|++|+.++ ..++.+|..|+++++.+ ..++.
T Consensus 230 i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~-~~~~~ 308 (979)
T 3tsy_A 230 LPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMP-KFEIN 308 (979)
T ss_dssp CCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECS-SCCHH
T ss_pred EEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeC-CCCHH
Confidence 999999999999999999999887765432 4568899999999999999998 45788999999999987 56889
Q ss_pred hHHHHHHHhCCcEEEccHHHHHHHHhcCcCCCCCCccccEEEEecCCCChhhHHHHHHhccCCceeccccchhccccccc
Q 007715 436 SFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQ 515 (592)
Q Consensus 436 ~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~ 515 (592)
.+++.|+++++|++.++|+++..|.+.......++++||.+++|||++++++.+++.+.+++++++|.||+||++.+++.
T Consensus 309 ~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~ 388 (979)
T 3tsy_A 309 LLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAM 388 (979)
T ss_dssp HHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTSCCTTCCEEEESSCCCCSSHHHHHHHHCTTCEEEECEECGGGCSEEEE
T ss_pred HHHHHHHHhCCeEEEcHHHHHHHHHhCccccCCCccceEEEEEcCCCCCHHHHHHHHHHCCCCeEEeeechhhhhHHHHh
Confidence 99999999999999999999999998876666779999999999999999999999999888999999999999865433
Q ss_pred CC----cCCCCccCcccccCCCceEEEEC-CCCCCCCCCCCcceeEEE-----ecccCCCchhhcccccccccc-ccCc
Q 007715 516 GS----LLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVYF-RGMP 583 (592)
Q Consensus 516 ~~----~~~~~~~~~iG~p~~~~~v~IlD-~~g~~vp~G~~giGel~v-----~~gY~~~~~~~~~~~~~~~~f-~~~~ 583 (592)
.. .......+++|+|++|++++|+| ++|+++|+|++ |||+| ++||+|+|+.+......+.|| +||-
T Consensus 389 ~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~--GEl~i~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDl 465 (979)
T 3tsy_A 389 SLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQP--GEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDI 465 (979)
T ss_dssp CGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCCTTCC--EEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEE
T ss_pred CCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCCCCCc--cEEEEECCCccccccCChhhhhhhccCCCcEEcCCE
Confidence 21 12234568999999999999999 67999999995 99999 799999999885554344444 4443
No 9
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=4.4e-55 Score=473.11 Aligned_cols=365 Identities=18% Similarity=0.169 Sum_probs=291.8
Q ss_pred CCCCCceEEEEeccCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecCC
Q 007715 187 RKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIAD 265 (592)
Q Consensus 187 ~~~pd~~Al~~~~~~~~~~~~~~lTy~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~v~a~lA~~k~Ga~~vpld~ 265 (592)
+++||++|+.....+ .+++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+++|+++||+||
T Consensus 11 ~~~p~~~a~~~~~~~-----~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl~~ 85 (503)
T 4fuq_A 11 DKLDDPHKLAIETAA-----GDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNT 85 (503)
T ss_dssp SCCSCTTSEEEEETT-----CCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEECCT
T ss_pred HhCCCCceEEEecCC-----CcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEecCC
Confidence 778888888753210 03899999999999999999999 999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCeeEEEEecceeccCccccchhhHhhcCCCcEEEEcCCCCCCCCCCccCcccHHHhhccCCCCCCC
Q 007715 266 SFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRP 345 (592)
Q Consensus 266 ~~~~~~l~~~l~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (592)
.+|.+++.++++++++++||+++... +....+.......+..+... ....+.+.......
T Consensus 86 ~~~~~~l~~il~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~---- 145 (503)
T 4fuq_A 86 AYTLHELDYFITDAEPKIVVCDPSKR------DGIAAIAAKVGATVETLGPD----------GRGSLTDAAAGASE---- 145 (503)
T ss_dssp TCCHHHHHHHHHHHCCSEEEECGGGT------TTTHHHHHHHTCEEEECCTT----------SCSHHHHHHHTSCS----
T ss_pred CCCHHHHHHHHHhcCCcEEEECchhh------HHHHHHHhhcCceEEEecCC----------cccccchhhhcCCC----
Confidence 99999999999999999999998642 22222222222222222211 11122222221111
Q ss_pred CCCCCCCCCCCCeEEEEeCCCCCCCCcEEEeCCchHHHHHHHhhhhcCCCCCCEEEEecccchhchh-HHHHHHHHcCCE
Q 007715 346 NYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGAT 424 (592)
Q Consensus 346 ~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~L~~G~~ 424 (592)
........++|+|||+|||||||+||||+++|+++.+.+.+....++++++|++++.+|++|+.++ ..++.+++.|++
T Consensus 146 -~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~ 224 (503)
T 4fuq_A 146 -AFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGS 224 (503)
T ss_dssp -CCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCE
T ss_pred -CcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCE
Confidence 122234567999999999999999999999999999998888888999999999999999999887 447789999999
Q ss_pred EEEeCCCCChhhHHHHHHHhCCcEEEccHHHHHHHHhcCcCCCCCCccccEEEEecCCCChhhHHHHHHhccCCceeccc
Q 007715 425 LALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESC 504 (592)
Q Consensus 425 lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~Y 504 (592)
+++.+ .+++..+++.++ ++|++.++|+++..|++.......++++||.+++|||++++++.+++...++ ++++|.|
T Consensus 225 ~~~~~-~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~-~~~~~~Y 300 (503)
T 4fuq_A 225 MIFLP-KFDPDKILDLMA--RATVLMGVPTFYTRLLQSPRLTKETTGHMRLFISGSAPLLADTHREWSAKTG-HAVLERY 300 (503)
T ss_dssp EEECS-SCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTTCSTTTTTTCCEEEECSSCCCHHHHHHHHHHHS-CCEEECC
T ss_pred EEEcC-CCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCCccccchhhcEEEEECCCCCCHHHHHHHHHHhC-CCccceE
Confidence 99987 578899999998 8999999999999999887666667899999999999999999999887765 7899999
Q ss_pred cchhcccccccCCcCCCCccCcccccCCCceEEEEC-CCCCCCCCCCCcceeEEE-----ecccCCCchhhccccccccc
Q 007715 505 GGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVY 578 (592)
Q Consensus 505 G~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~v~IlD-~~g~~vp~G~~giGel~v-----~~gY~~~~~~~~~~~~~~~~ 578 (592)
|+||+++.+. .........+++|+|++|++++|+| ++|+++|+|++ |||+| ++||+|+|+.+......+.|
T Consensus 301 G~TE~~~~~~-~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~--GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~ 377 (503)
T 4fuq_A 301 GMTETNMNTS-NPYDGDRVPGAVGPALPGVSARVTDPETGKELPRGDI--GMIEVKGPNVFKGYWRMPEKTKSEFRDDGF 377 (503)
T ss_dssp EETTTEECBC-CCSSSCCCTTEEEEBCTTCEEEEECTTTCCBCCTTCC--EEEEEESTTSCCCBTTCHHHHHHTBCTTSC
T ss_pred cccccCcccc-cCCCCCCcCCccccCCCCeEEEEEECCCCCCCcCCCc--eEEEEECCchhhhhcCChhhhHhhhCCCCC
Confidence 9999986533 2323345568999999999999999 88999999995 99999 89999999988555543444
Q ss_pred c-ccCcC
Q 007715 579 F-RGMPM 584 (592)
Q Consensus 579 f-~~~~~ 584 (592)
| +||-+
T Consensus 378 ~~TGDl~ 384 (503)
T 4fuq_A 378 FITGDLG 384 (503)
T ss_dssp EEEEEEE
T ss_pred eEcceeE
Confidence 4 44433
No 10
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=2.7e-55 Score=475.92 Aligned_cols=345 Identities=19% Similarity=0.192 Sum_probs=292.7
Q ss_pred CCCCCCceEEEEeccCCCCCCceEecHHHHHHHHHHHHHHHHhh--cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEec
Q 007715 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM--FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (592)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTy~eL~~~a~~lA~~L~~~--v~~gd~V~i~~~~~~e~v~a~lA~~k~Ga~~vpl 263 (592)
|+++||++|+++.++ ++||+||+++++++|++|++. +++|++|+++++|++++++++|||+++|+++||+
T Consensus 11 a~~~p~~~Al~~~~~--------~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~vpl 82 (511)
T 3e7w_A 11 AETYPQTDAFRSQGQ--------SLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHPYIPV 82 (511)
T ss_dssp HHHSTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHCCCCeEEEcCCc--------eeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHHhCCEEEec
Confidence 478999999998776 999999999999999999885 8899999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEEecceeccCccccchhhHhhcCCCcEEEEcCCCCCCCCCCccCcccHHHhhccCCCCC
Q 007715 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (592)
Q Consensus 264 d~~~~~~~l~~~l~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (592)
|+.++.+++.++++++++++||+++.... . .... ......++++......
T Consensus 83 ~~~~~~~~l~~~l~~~~~~~li~~~~~~~-----~-------~~~~----------------~~~~~~~~~~~~~~~~-- 132 (511)
T 3e7w_A 83 DLSIPSERIAKIIESSGAELLIHAAGLSI-----D-------AVGQ----------------QIQTVSAEELLENEGG-- 132 (511)
T ss_dssp ETTSCHHHHHHHHHHHTCCEEEESSSCCT-----T-------CCCC----------------SSCEEEHHHHHTSCSC--
T ss_pred CCCChHHHHHHHHHhCCCCEEEecccccc-----h-------hccc----------------ccceecHhhhhccccC--
Confidence 99999999999999999999999764210 0 0000 0112234454443222
Q ss_pred CCCCCCCCCCCCCCeEEEEeCCCCCCCCcEEEeCCchHHHHHHHhhhhcCCCCCCEEEEecccchhchhHHHHHHHHcCC
Q 007715 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGA 423 (592)
Q Consensus 344 ~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~ 423 (592)
.........+++++||+|||||||.||||+++|+++.+.+.+....++++++|++++.+|++|+.+++.++.+|+.|+
T Consensus 133 --~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~ 210 (511)
T 3e7w_A 133 --SVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGG 210 (511)
T ss_dssp --CCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTC
T ss_pred --CccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEEeCCccHHHHHHHHHHHHhcCC
Confidence 111223456789999999999999999999999999999888888899999999999999999999988999999999
Q ss_pred EEEEeCCC--CChhhHHHHHHHhCCcEEEccHHHHHHHHhcCcCCCCCCccccEEEEecCCCChhhHHHHHHhccCCcee
Q 007715 424 TLALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 501 (592)
Q Consensus 424 ~lvl~~~~--~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~~~~l~ 501 (592)
++++.+.. .++..+++.|+++++|++.++|+++..++.........++++|.+++|||++++++.+++.+.+++++++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~ 290 (511)
T 3e7w_A 211 TLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIF 290 (511)
T ss_dssp EEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEE
T ss_pred EEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccccccccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEE
Confidence 99998642 4788999999999999999999999999987666666789999999999999999999999998889999
Q ss_pred ccccchhcccccccCCcC----CCCccCcccccCCCceEEEECCCCCCCCCCCCcceeEEE-----ecccCCCchhhccc
Q 007715 502 ESCGGTELSSAYIQGSLL----QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNA 572 (592)
Q Consensus 502 n~YG~TE~~~~~~~~~~~----~~~~~~~iG~p~~~~~v~IlD~~g~~vp~G~~giGel~v-----~~gY~~~~~~~~~~ 572 (592)
|.||+||+++.++..... ......++|+|++|++++|+|++|+++|+|++ |||+| ++||+|+|+.+...
T Consensus 291 ~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~--GEl~v~g~~v~~GY~~~~~~t~~~ 368 (511)
T 3e7w_A 291 NTYGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMDEEGQPLPEGEK--GEIVIAGPSVSRGYLGEPELTEKA 368 (511)
T ss_dssp ECCCCGGGSSCSEEEEECHHHHTTCSSCCCBEECTTCEEEEECTTSCBCCTTCC--EEEEEESTTSCCCBTTCHHHHHHH
T ss_pred eCcccchheeeeeEEeccccccccCCcCCCcceeCCCEEEEECCCCCCCCCCCc--eEEEEecCccChhhCCCcccchhh
Confidence 999999998654432211 22345689999999999999999999999995 99999 78999999987443
No 11
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=1.5e-55 Score=484.12 Aligned_cols=338 Identities=18% Similarity=0.169 Sum_probs=281.9
Q ss_pred CCCCCCceEEEEeccCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecC
Q 007715 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (592)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTy~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~v~a~lA~~k~Ga~~vpld 264 (592)
++++||++|+++.++ ++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+++|+++||++
T Consensus 85 a~~~pd~~A~~~~~~--------~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~ 156 (570)
T 4gr5_A 85 AARAPDAVALLHEAD--------ELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGYTMLD 156 (570)
T ss_dssp HHHCTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECC
T ss_pred HHHCCCCeEEECCCC--------cEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHHCCEEEEcC
Confidence 478999999999776 999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEEecceeccCccccchhhHhhcCCCcEEEEcCCCCCCCCCCccCcccHHHhhccCCCCCC
Q 007715 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 344 (592)
Q Consensus 265 ~~~~~~~l~~~l~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (592)
|.++.+++.++++++++++||+++..... ......++.... .....
T Consensus 157 ~~~~~~~l~~~l~~~~~~~~i~~~~~~~~-------------~~~~~~~~~~~~----------------~~~~~----- 202 (570)
T 4gr5_A 157 PQFPVERLALSLEDTGAPLLVTSRPLSGR-------------LTGTTTLYVEDE----------------AASDA----- 202 (570)
T ss_dssp TTSCHHHHHHHHHHHTCSEEEECTTTTTS-------------SCSSEEEECCC---------------------------
T ss_pred CCChHHHHHHHHHhcCCCEEEecchhhhc-------------ccCCcceeeecc----------------ccccc-----
Confidence 99999999999999999999998753211 111111111000 00000
Q ss_pred CCCCCCCCCCCCCeEEEEeCCCCCCCCcEEEeCCchHHHHHHHhhhhcCCCCCCEEEEecccchhchhHHHHHHHHcCCE
Q 007715 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGAT 424 (592)
Q Consensus 345 ~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~ 424 (592)
..........++|+|||+|||||||.||||+++|+++.+.+.+ ...++++++|++++.+|++|+.+.+.++.+|+.|++
T Consensus 203 ~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~ 281 (570)
T 4gr5_A 203 PAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGAR 281 (570)
T ss_dssp -CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSCCSTTCEEEECSCTTSSTHHHHHHHHHTTTCE
T ss_pred cccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcCCCCCCEEEEecCccHHHHHHHHHHHHhcCCE
Confidence 0011223456799999999999999999999999998776654 355678999999999999999988889999999999
Q ss_pred EEEeCC-CCChhhHHHHHHHhCCcEEEccHHHHHHHHhcCcCCCCCCccccEEEEecCCCChhhHHHHHHhccCCceecc
Q 007715 425 LALYQG-SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIES 503 (592)
Q Consensus 425 lvl~~~-~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~ 503 (592)
+++.+. ..++..+++.|+++++|++.++|+++..|.+... .++++||.+++|||+++.++.+++.+.+++++++|.
T Consensus 282 ~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~---~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~ 358 (570)
T 4gr5_A 282 CVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVP---EAFEGVRYAITGGEPASVPHVAKARRDHPALRLGNG 358 (570)
T ss_dssp EEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCG---GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEE
T ss_pred EEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhch---hhCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEe
Confidence 999864 4588899999999999999999999999987643 347899999999999999999998888888899999
Q ss_pred ccchhcccccccCCc---CCCCccCcccccCCCceEEEECCCCCCCCCCCCcceeEEE-----ecccCCCchhhcc
Q 007715 504 CGGTELSSAYIQGSL---LQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLN 571 (592)
Q Consensus 504 YG~TE~~~~~~~~~~---~~~~~~~~iG~p~~~~~v~IlD~~g~~vp~G~~giGel~v-----~~gY~~~~~~~~~ 571 (592)
||+||+++.++.... .......++|+|++|++++|+|++|+++|+|+ +|||+| ++||+|+|+.+..
T Consensus 359 YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~~~~~~~G~--~GEl~v~g~~v~~GY~~~~~~t~~ 432 (570)
T 4gr5_A 359 YGPAESMGFTTHHAVVAGDLSGTALPIGVPLAGKRAYVLDDDLKPAANGA--LGELYVAGAGLAHGYVSRPALTAE 432 (570)
T ss_dssp ECCGGGCSCSEEEECCGGGTTSSSCCCBEECTTEEEEEECTTSCBCCTTC--EEEEEEEETTCCCEETTCHHHHHH
T ss_pred echhhheeeeeeeeecccccCCCccccceeeCCCEEEEECCCCCCCCCCC--cEEEEEeecccchhcCCCchhhhc
Confidence 999999865443221 12234568999999999999999999999999 599999 8999999998743
No 12
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=2.1e-55 Score=480.22 Aligned_cols=375 Identities=17% Similarity=0.163 Sum_probs=296.6
Q ss_pred cCCCCCCceEEEEeccCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEec
Q 007715 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (592)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTy~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~v~a~lA~~k~Ga~~vpl 263 (592)
+++++||++|+++.++ ++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+++|+++||+
T Consensus 39 ~a~~~p~~~Al~~~~~--------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~Gav~vpl 110 (544)
T 3o83_A 39 GVQSHPHSLAIICGER--------QLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVVLNA 110 (544)
T ss_dssp HHHHCTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEEEEC
T ss_pred HHHhCCCceEEEcCCC--------ceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEecC
Confidence 3478999999999876 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEEecceeccCccccchhhHhhcCCC-cEEEEcCCCCCCCCCCccCcccHHHhhccCCCC
Q 007715 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL-KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (592)
Q Consensus 264 d~~~~~~~l~~~l~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (592)
++.++.+++.+++++++++++|+++..... ........+...... ..+++.... .....+.++......
T Consensus 111 ~~~~~~~~l~~~l~~~~~~~li~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~- 180 (544)
T 3o83_A 111 LYSHRQYELNAFIKQIQPKLLIGSRQHEVF-SNNQFIDSLHDVNLSPEIILMLNHQ--------ATDFGLLDWIETPAE- 180 (544)
T ss_dssp CTTCCHHHHHHHHHHHCCSEEEEETTSGGG-SSSHHHHHHHHTTCCCSEEEEETCC--------TTSEEHHHHHHSCCS-
T ss_pred CCCCCHHHHHHHHHhcCeeEEEEccccccc-cHHHHHHHHhhcccCcceEEEecCC--------ccccchhhhhhcccc-
Confidence 999999999999999999999998754210 001122222222222 222221111 011234444333221
Q ss_pred CCCCCCCCCCCCCCCeEEEEeCCCCCCCCcEEEeCCchHHHHHHHhhhhcCCCCCCEEEEecccchhchhH--HHHHHHH
Q 007715 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV--ILFSSFL 420 (592)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~--~~~~~L~ 420 (592)
.........++++|||+|||||||+||||+++|+++.+.+.+....++++++|++++..|++|.+++. .++.+|+
T Consensus 181 ---~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~ 257 (544)
T 3o83_A 181 ---TFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPGALGVLH 257 (544)
T ss_dssp ---SCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHSSHHHHHHH
T ss_pred ---cccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceEeecchHHHHHHHH
Confidence 11112345679999999999999999999999999999998888889999999999999988877763 6889999
Q ss_pred cCCEEEEeCCCCChhhHHHHHHHhCCcEEEccHHHHHHHHhcCcCCCCCCccccEEEEecCCCChhhHHHHHHhccCCce
Q 007715 421 NGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAI 500 (592)
Q Consensus 421 ~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~~~~l 500 (592)
.|+++++.+ .+++..+++.|+++++|++.++|+++..|++.......++++||.+++|||++++++.+++.+.+ ++++
T Consensus 258 ~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~~ 335 (544)
T 3o83_A 258 AGGCVVMAP-NPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFPESLARQVPEVL-NCKL 335 (544)
T ss_dssp TTCEEEECS-SCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESSCCCHHHHTHHHHHH-CSEE
T ss_pred cCCEEEECC-CCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccccCCcceEEEEcCCCCCHHHHHHHHHHh-CCcE
Confidence 999999987 46889999999999999999999999999887554455688999999999999999999988876 4899
Q ss_pred eccccchhcccccccCCcCCCCccCcccccC-CCceEEEECCCCCCCCCCCCcceeEEE-----ecccCCCchhhccccc
Q 007715 501 IESCGGTELSSAYIQGSLLQPQAFGAFSTAT-MTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADH 574 (592)
Q Consensus 501 ~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~-~~~~v~IlD~~g~~vp~G~~giGel~v-----~~gY~~~~~~~~~~~~ 574 (592)
+|.||+||+++.+............++|+|+ ++++++|+|++|+++|+|+. |||+| +.||+|+|+.+.....
T Consensus 336 ~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~~--GEl~v~g~~v~~GY~~~~~~t~~~f~ 413 (544)
T 3o83_A 336 QQVFGMAEGLVNYTRLDDSDEQIFTTQGRPISSDDEIKIVDEQYREVPEGEI--GMLATRGPYTFCGYYQSPEHNSQVFD 413 (544)
T ss_dssp EEEEECTTSCEEECCTTSCHHHHHHCCCEESCTTCEEEEECTTSCBCCTTCC--EEEEEECTTSCSCCTTCHHHHHHHBC
T ss_pred EeeeccccccceeecCCCchhhccCCCceecCCCcEEEEECCCCCCCCCCCe--eEEEEecCCcchhhcCChhhhhhhCC
Confidence 9999999987544332222223457899997 89999999999999999995 99999 7899999998855543
Q ss_pred ccccc-ccCcC
Q 007715 575 EEVYF-RGMPM 584 (592)
Q Consensus 575 ~~~~f-~~~~~ 584 (592)
.+.|| +||-+
T Consensus 414 ~~g~~~TGDlg 424 (544)
T 3o83_A 414 EDNYYYSGDLV 424 (544)
T ss_dssp TTCCEEEEEEE
T ss_pred CCCCeEcCCEE
Confidence 34444 44433
No 13
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=1.2e-55 Score=481.64 Aligned_cols=370 Identities=15% Similarity=0.126 Sum_probs=293.0
Q ss_pred CCCCCCceEEEEeccCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecC
Q 007715 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (592)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTy~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~v~a~lA~~k~Ga~~vpld 264 (592)
++++||++|+++.++ ++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+++|+++||++
T Consensus 35 a~~~p~~~A~~~~~~--------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl~ 106 (539)
T 1mdb_A 35 AAKYGDRIAITCGNT--------HWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFAL 106 (539)
T ss_dssp HHHHTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEEEECC
T ss_pred HHHCCCCEEEEeCCC--------cccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCeEEecCC
Confidence 378999999998776 999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEEecceeccCccccchhhHhhcCCC-cEEEEcCCCCCCCCCCccCcccHHHhhccCCCCC
Q 007715 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL-KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (592)
Q Consensus 265 ~~~~~~~l~~~l~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (592)
|.++.+++.+++++++++++|+++..... ........+....+. ..+++.... ..+.++......
T Consensus 107 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~-- 172 (539)
T 1mdb_A 107 PSHRSSEITYFCEFAEAAAYIIPDAYSGF-DYRSLARQVQSKLPTLKNIIVAGEA-----------EEFLPLEDLHTE-- 172 (539)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEESEETTE-EHHHHHHHHHHHCTTCCCEEEESCC-----------TTSEEGGGCCCC--
T ss_pred CCCCHHHHHHHHHhCCCCEEEeccccccc-cHHHHHHHHHhcCCCccEEEEcCCc-----------cchhhhhhcccc--
Confidence 99999999999999999999998753110 000112222222222 122221110 012222221111
Q ss_pred CCCCCCCCCCCCCCeEEEEeCCCCCCCCcEEEeCCchHHHHHHHhhhhcCCCCCCEEEEecccchhchhH--HHHHHHHc
Q 007715 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV--ILFSSFLN 421 (592)
Q Consensus 344 ~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~--~~~~~L~~ 421 (592)
........++++|||+|||||||+||||+++|+++++.+.+....++++++|++++.+|++|+.++. .++.+|+.
T Consensus 173 ---~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~ 249 (539)
T 1mdb_A 173 ---PVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYA 249 (539)
T ss_dssp ---CCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHT
T ss_pred ---ccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccchhhHHHHHHHHHh
Confidence 1112345678999999999999999999999999998888887888999999999999999998875 58999999
Q ss_pred CCEEEEeCCCCChhhHHHHHHHhCCcEEEccHHHHHHHHhcCcCCCCCCccccEEEEecCCCChhhHHHHHHhccCCcee
Q 007715 422 GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 501 (592)
Q Consensus 422 G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~~~~l~ 501 (592)
|+++++.+ .+++..+++.|+++++|++.++|+++..|++.......++++||.+++|||++++++.+++.+.++ ++++
T Consensus 250 G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~-~~~~ 327 (539)
T 1mdb_A 250 GGRVVLSP-SPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVFG-CTLQ 327 (539)
T ss_dssp TCEEEECS-SSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHHHTC-SEEE
T ss_pred CCEEEECC-CCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCCCCCHHHHHHHHHHhC-CcEE
Confidence 99999987 578899999999999999999999999998765444567899999999999999999998887774 8899
Q ss_pred ccccchhcccccccCCcCCCCccCcccccCCCc-eEEEECCCCCCCCCCCCcceeEEE-----ecccCCCchhhcccccc
Q 007715 502 ESCGGTELSSAYIQGSLLQPQAFGAFSTATMTA-GLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHE 575 (592)
Q Consensus 502 n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~-~v~IlD~~g~~vp~G~~giGel~v-----~~gY~~~~~~~~~~~~~ 575 (592)
|.||+||+++.+...........+++|+|+++. +++|+|++|+++|+|+. |||+| ++||+|+|+.+......
T Consensus 328 ~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~~--GEl~v~g~~v~~GY~~~~~~t~~~f~~ 405 (539)
T 1mdb_A 328 QVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGET--GHLLTRGPYTIRGYYKAEEHNAASFTE 405 (539)
T ss_dssp EEEECTTSCEEECCTTSCHHHHHHCCCEESSTTCEEEEECTTSCBCCTTCC--EEEEEECTTSCSSCTTCHHHHHHHBCT
T ss_pred EEEcCCCCcccccCCCCcHHhcCCCCCcccCCCceEEEECCCCCCCcCCCc--ceEEeeCcccchhhcCChhhhhhhccC
Confidence 999999976433221111122357899999764 89999999999999995 99999 78999999987554433
Q ss_pred cccc-ccCcC
Q 007715 576 EVYF-RGMPM 584 (592)
Q Consensus 576 ~~~f-~~~~~ 584 (592)
+.|| +||-+
T Consensus 406 ~g~~~TGDlg 415 (539)
T 1mdb_A 406 DGFYRTGDIV 415 (539)
T ss_dssp TSCEEEEEEE
T ss_pred CCCeecCceE
Confidence 3444 44433
No 14
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=1.2e-55 Score=478.88 Aligned_cols=347 Identities=19% Similarity=0.230 Sum_probs=288.3
Q ss_pred CCCCCCceEEEEeccCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecC
Q 007715 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (592)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTy~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~v~a~lA~~k~Ga~~vpld 264 (592)
++++||++|+++.++ ++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|+++||++
T Consensus 11 a~~~p~~~A~~~~~~--------~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~~~~G~v~vpl~ 82 (512)
T 3fce_A 11 AAETPDQTAFVWRDA--------KITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGHAYIPVD 82 (512)
T ss_dssp HHHSTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHCCCceEEEeCCc--------eEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEeeC
Confidence 478999999999877 999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEEecceeccCccccchhhHhhcCCCcEEEEcCCCCCCCCCCccCcccHHHhhccCCCCCC
Q 007715 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 344 (592)
Q Consensus 265 ~~~~~~~l~~~l~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (592)
+.++.+++.+++++++++++|++...... .... .++. ...+.++......
T Consensus 83 ~~~~~~~l~~il~~~~~~~~i~~~~~~~~------------~~~~--~~~~-------------~~~~~~~~~~~~~--- 132 (512)
T 3fce_A 83 LSIPADRVQRIAENSGAKLLLSATAVTVT------------DLPV--RIVS-------------EDNLKDIFFTHKG--- 132 (512)
T ss_dssp TTSCHHHHHHHHHHSCCCEEEESSCCCSS------------CCSS--EEEE-------------THHHHHHHHHTTT---
T ss_pred CCCcHHHHHHHHHhcCCCEEEecCccccc------------cccc--ceec-------------hhhhhhhcccccc---
Confidence 99999999999999999999998642110 0000 0110 0112222211111
Q ss_pred CCCCCCCCCCCCCeEEEEeCCCCCCCCcEEEeCCchHHHHHHHhhhhcCCCCCCEEEEecccchhchhHHHHHHHHcCCE
Q 007715 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGAT 424 (592)
Q Consensus 345 ~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~ 424 (592)
....+.....+++++||+|||||||.||||+++|+++.+.+.+....++++++|++++.+|++|+.+++.++.+++.|++
T Consensus 133 ~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~ 212 (512)
T 3fce_A 133 NTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGT 212 (512)
T ss_dssp CCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCE
T ss_pred cCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCE
Confidence 11112334567999999999999999999999999999998888888999999999999999999999889999999999
Q ss_pred EEEeCCC--CChhhHHHHHHHhCCcEEEccHHHHHHHHhcCcCCCCCCccccEEEEecCCCChhhHHHHHHhccCCceec
Q 007715 425 LALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIE 502 (592)
Q Consensus 425 lvl~~~~--~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~~~~l~n 502 (592)
+++.+.. .++..+++.|+++++|++.++|+++..++........++++||.+++|||++++++.+++.+.+++++++|
T Consensus 213 ~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~ 292 (512)
T 3fce_A 213 LWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMN 292 (512)
T ss_dssp EEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCSTTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEE
T ss_pred EEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccchhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEe
Confidence 9998742 47889999999999999999999999998876666677899999999999999999999999988899999
Q ss_pred cccchhcccccccCCcC----CCCccCcccccCCCceEEEECCCCCCCCCCCCcceeEEE-----ecccCCCchhhccc
Q 007715 503 SCGGTELSSAYIQGSLL----QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNA 572 (592)
Q Consensus 503 ~YG~TE~~~~~~~~~~~----~~~~~~~iG~p~~~~~v~IlD~~g~~vp~G~~giGel~v-----~~gY~~~~~~~~~~ 572 (592)
.||+||+++.++..... ......++|+|+++++++|+|++|+++|+|+. |||+| +.||+|+|+.+...
T Consensus 293 ~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~--GEl~v~g~~v~~GY~~~~~~t~~~ 369 (512)
T 3fce_A 293 TYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMKEDGTIAPDGEK--GEIVIVGPSVSVGYLGSPELTEKA 369 (512)
T ss_dssp EECCGGGSSCSEEEECCHHHHHHCSSCCCEEECTTCEEEEECSSSCBCCTTSC--EEEEEESTTSCSCBTTCHHHHHHH
T ss_pred CcccChhhhheeeEEeccccccccCCCccccccCCcEEEEECCCCCCCCCCCe--EEEEEeccccChhhcCCchhhhhc
Confidence 99999998654432221 12245789999999999999999999999995 99999 79999999987443
No 15
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=1.3e-54 Score=480.82 Aligned_cols=364 Identities=15% Similarity=0.156 Sum_probs=290.5
Q ss_pred CCceEEEEeccCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecCCCCC
Q 007715 190 DNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268 (592)
Q Consensus 190 pd~~Al~~~~~~~~~~~~~~lTy~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~v~a~lA~~k~Ga~~vpld~~~~ 268 (592)
||++|+++.++ ++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+|+|+++||+||.+|
T Consensus 39 pd~~Av~~~~~--------~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA~l~aG~~~vpl~~~~~ 110 (617)
T 3rg2_A 39 SDSIAVIDGER--------QLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVLALFSHQ 110 (617)
T ss_dssp CCSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEEECTTCC
T ss_pred CCCeEEecCCc--------eEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhcCeEEccCCcccc
Confidence 99999999877 999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCeeEEEEecceeccCccccchhhHhhcCCC-cEEEEcCCCCCCCCCCccCcccHHHhhccCCCCCCCCC
Q 007715 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL-KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNY 347 (592)
Q Consensus 269 ~~~l~~~l~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (592)
.+++.++++++++++++++....... .......+....+. ..+.+... .....+.+....... .
T Consensus 111 ~~~l~~~l~~~~~~~vl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~-----~ 175 (617)
T 3rg2_A 111 RSELNAYASQIEPALLIADRQHALFS-GDDFLNTFVTEHSSIRVVQLLND---------SGEHNLQDAINHPAE-----D 175 (617)
T ss_dssp HHHHHHHHHHHCCSEEEEETTSGGGS-SSHHHHHHHHHSTTCCEEEEETC---------CSTTBHHHHHHSCCS-----S
T ss_pred HHHHHHHHhhcCceEEEecccccccc-cHHHHHHHhhcCCccceeeeccc---------ccccchhhhhccccc-----c
Confidence 99999999999999999997542100 00111222222222 22222111 111234444333221 1
Q ss_pred CCCCCCCCCCeEEEEeCCCCCCCCcEEEeCCchHHHHHHHhhhhcCCCCCCEEEEecccchhchh--HHHHHHHHcCCEE
Q 007715 348 YSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP--VILFSSFLNGATL 425 (592)
Q Consensus 348 ~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~--~~~~~~L~~G~~l 425 (592)
.......++++|||+|||||||+||||+++|+++++.+.+....++++++|++++.+|++|.++. ++++.+|+.|+++
T Consensus 176 ~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~ 255 (617)
T 3rg2_A 176 FTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTV 255 (617)
T ss_dssp CCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEE
T ss_pred cCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEE
Confidence 22334567999999999999999999999999999999888888999999999999997776555 4789999999999
Q ss_pred EEeCCCCChhhHHHHHHHhCCcEEEccHHHHHHHHhcCcC--CCCCCccccEEEEecCCCChhhHHHHHHhccCCceecc
Q 007715 426 ALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL--EGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIES 503 (592)
Q Consensus 426 vl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~--~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~ 503 (592)
++.+ ..++..+++.|+++++|++.++|+++..|.+.... ...++++||.+++|||++++++.+++...++ ++++|.
T Consensus 256 v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~-~~~~~~ 333 (617)
T 3rg2_A 256 VLAA-DPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEIG-CQLQQV 333 (617)
T ss_dssp EECS-SCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCCHHHHHHHHHHTC-SEEEEE
T ss_pred EEeC-CCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcCCHHHHHHHHHHhC-CcEEEE
Confidence 9987 46788899999999999999999999998875322 2336899999999999999999999887764 899999
Q ss_pred ccchhcccccccCCcCCCCccCcccccC-CCceEEEECCCCCCCCCCCCcceeEEE-----ecccCCCchhhcccccccc
Q 007715 504 CGGTELSSAYIQGSLLQPQAFGAFSTAT-MTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEV 577 (592)
Q Consensus 504 YG~TE~~~~~~~~~~~~~~~~~~iG~p~-~~~~v~IlD~~g~~vp~G~~giGel~v-----~~gY~~~~~~~~~~~~~~~ 577 (592)
||+||+++.++...........++|+|+ ++++++|+|++|+++|+|++ |||+| ++||+|+|+.|...+..+.
T Consensus 334 YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~p~G~~--GEl~i~G~~v~~GY~~~p~~t~~~f~~~~ 411 (617)
T 3rg2_A 334 FGMAEGLVNYTRLDDSAEKIIHTQGYPMCPDDEVWVADAEGNPLPQGEV--GRLMTRGPYTFRGYYKSPQHNASAFDANG 411 (617)
T ss_dssp EEETTEEEEECCTTSCHHHHHHCCCEESCTTCEEEEECTTSCBCCTTCC--EEEEEECSSSCSCCTTCHHHHHHHBCTTS
T ss_pred eccCcceeecccCCCcccccccCCCccCCCCceEEEECCCCCCCCCCCc--eEEEecCccccchhcCChhhhhhccCCCC
Confidence 9999998654332222222346899998 78899999999999999995 99998 8999999998855543444
Q ss_pred ccc
Q 007715 578 YFR 580 (592)
Q Consensus 578 ~f~ 580 (592)
||+
T Consensus 412 ~yr 414 (617)
T 3rg2_A 412 FYC 414 (617)
T ss_dssp CEE
T ss_pred cee
Confidence 443
No 16
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=2.3e-55 Score=476.93 Aligned_cols=364 Identities=21% Similarity=0.167 Sum_probs=293.1
Q ss_pred CCCCCCceEEEEeccCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecC
Q 007715 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (592)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTy~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~v~a~lA~~k~Ga~~vpld 264 (592)
++++||++|+++.+. .+++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+++|+++||||
T Consensus 26 a~~~p~~~A~~~~~~------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~ 99 (517)
T 3r44_A 26 ATVSPRLQAYVEPST------DVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPIN 99 (517)
T ss_dssp HHHSTTSEEEEEGGG------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECC
T ss_pred HHhCCCCeEEEeCCc------CceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Confidence 478999999998653 24899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEEecceeccCccccchhhHhhcCCC--cEEEEcCCCCCCCCCCccCcccHHHhhccCCCC
Q 007715 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (592)
Q Consensus 265 ~~~~~~~l~~~l~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (592)
|.++.+++.+++++++++++|++.... +....+...... .++.+. ....+.+.......
T Consensus 100 ~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~- 160 (517)
T 3r44_A 100 TRLAAPEVSFILSDSGSKVVIYGAPSA------PVIDAIRAQADPPGTVTDWI------------GADSLAERLRSAAA- 160 (517)
T ss_dssp TTSCHHHHHHHHHHHTCSEEEECGGGH------HHHHHHHHSSSCCTTCCEEE------------EHHHHHHHHHHCCC-
T ss_pred cccCHHHHHHHHHhcCceEEEECCchH------HHHHHHHhccCCccEEEEcc------------CcccHHHHhhccCc-
Confidence 999999999999999999999987532 222222221111 111110 01123343332221
Q ss_pred CCCCCCCCCCCCCCCeEEEEeCCCCCCCCcEEEeCCchHHHHHHHhhhhcCCCCCCEEEEecccchhchhHHHHHHHHcC
Q 007715 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNG 422 (592)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G 422 (592)
..+.....++++|||+|||||||+||||+++|+++.+.+.+....++++++|++++.+|++|+.++..++.+++.|
T Consensus 161 ----~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~~~G 236 (517)
T 3r44_A 161 ----DEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAMRG 236 (517)
T ss_dssp ----CCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHHHHHHHHHHHHHT
T ss_pred ----CCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHhcC
Confidence 1223345679999999999999999999999999999888888888999999999999999999998766777799
Q ss_pred CEEEEeCCCCChhhHHHHHHHhCCcEEEccHHHHHHHHhcCcCCCCCCccccEEEEecCCCChhhHHHHHHhccCCceec
Q 007715 423 ATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIE 502 (592)
Q Consensus 423 ~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~~~~l~n 502 (592)
+++++.+ .+++..+++.|+++++|++.++|+++..|.+.......++++||.+++|||++++++.+++... +++++|
T Consensus 237 ~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~--~~~~~~ 313 (517)
T 3r44_A 237 VTLISMP-QFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAK--NIEVVQ 313 (517)
T ss_dssp CEEEECS-SCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCCTTCCEEEECSSCCCHHHHHHHHHT--TCEEEE
T ss_pred eEEEEeC-CCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCCCcccEEEECCCCCCHHHHHHHHhc--CCcEEE
Confidence 9999987 5789999999999999999999999999987655445668899999999999999999988876 589999
Q ss_pred cccchhcccccccCCcC-CCCccCcccccCCCceEEEECCCCCCCCCCCCcceeEEE-----ecccCCCchhhccccccc
Q 007715 503 SCGGTELSSAYIQGSLL-QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEE 576 (592)
Q Consensus 503 ~YG~TE~~~~~~~~~~~-~~~~~~~iG~p~~~~~v~IlD~~g~~vp~G~~giGel~v-----~~gY~~~~~~~~~~~~~~ 576 (592)
.||+||+++..+..... .....+++|+|+++++++|+|++|+++|.| + |||+| ++||+|+|+.+...+...
T Consensus 314 ~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g-~--GEl~v~g~~v~~GY~~~p~~t~~~f~~g 390 (517)
T 3r44_A 314 GYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGVIREHG-E--GEVVIKSDILLKEYWNRPEATRDAFDNG 390 (517)
T ss_dssp EEECGGGTTCEEEECGGGTTTTTTCCBEECTTEEEEEECTTSCEESSE-E--EEEEEEETTSCSEETTCHHHHHHTEETT
T ss_pred eecccccccceeecCCccccccCCCCCcCCCCeEEEEECCCCCCCCCC-C--eEEEEeCcchhhhhCCChhhhHhhhcCC
Confidence 99999998654433322 244568999999999999999999999998 3 99999 889999999885444344
Q ss_pred cccccCcC
Q 007715 577 VYFRGMPM 584 (592)
Q Consensus 577 ~~f~~~~~ 584 (592)
||-+||-+
T Consensus 391 ~~~TGDl~ 398 (517)
T 3r44_A 391 WFRTGDIG 398 (517)
T ss_dssp EEEEEEEE
T ss_pred CEecceeE
Confidence 44444443
No 17
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=3.7e-55 Score=479.04 Aligned_cols=376 Identities=16% Similarity=0.160 Sum_probs=293.7
Q ss_pred CCCCCceEEE---EeccCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEe
Q 007715 187 RKEDNTVAIV---WREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVS 262 (592)
Q Consensus 187 ~~~pd~~Al~---~~~~~~~~~~~~~lTy~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~v~a~lA~~k~Ga~~vp 262 (592)
+++||++|++ +... .+++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+++|+++||
T Consensus 31 ~~~p~~~a~~a~~~~~~------~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vp 104 (550)
T 3rix_A 31 KRYALVPGTIAFTDAHI------EVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAP 104 (550)
T ss_dssp HHHHTSTTCEEEEETTT------CCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHHTCEEEE
T ss_pred HhCCCCceEEEeeecCC------CcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccHHHHHHHHHHcCCEEee
Confidence 6788888865 3211 13899999999999999999999 999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCeeEEEEecceeccCccccchhhHhhcCCC--cEEEEcCCCCCCCCCCccCcccHHHhhccCC
Q 007715 263 IADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLSSVD 340 (592)
Q Consensus 263 ld~~~~~~~l~~~l~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (592)
+||.++.+++.+++++++++++|+++... +....+....+. .++++..... ..+...+.++.....
T Consensus 105 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 172 (550)
T 3rix_A 105 ANDIYNERELLNSMNISQPTVVFVSKKGL------QKILNVQKKLPIIQKIIIMDSKTD------YQGFQSMYTFVTSHL 172 (550)
T ss_dssp CCTTCCHHHHHHHHHHHCCSEEEECGGGH------HHHHHHHHHCTTCCEEEETTCSSC------BTTBCBHHHHHHHHC
T ss_pred cCCcCCHHHHHHHHHhcCCeEEEEcHHHH------HHHHHHHhhCCCcceEEEEcCCcc------ccCcccHHHHhhccc
Confidence 99999999999999999999999998532 222333333332 2222221111 123345555554322
Q ss_pred CCCC-CCCC-CCCCCCCCCeEEEEeCCCCCCCCcEEEeCCchHHHHHHHhhhh---cCCCCCCEEEEecccchhchhHHH
Q 007715 341 YHPR-PNYY-SPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH---IDLKVGDVYCWPTNLGWVMGPVIL 415 (592)
Q Consensus 341 ~~~~-~~~~-~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~d~~l~~~~~~~~~~~~~~ 415 (592)
.... .... +.....++++|||+|||||||+||||+++|+++.+.+.+.... +++.++|++++.+|++|+.+++.+
T Consensus 173 ~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~ 252 (550)
T 3rix_A 173 PPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTT 252 (550)
T ss_dssp CTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHH
T ss_pred cccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHHHHH
Confidence 1000 0011 1122235789999999999999999999999998877665544 568899999999999999999888
Q ss_pred HHHHHcCCEEEEeCCCCChhhHHHHHHHhCCcEEEccHHHHHHHHhcCcCCCCCCccccEEEEecCCCChhhHHHHHHhc
Q 007715 416 FSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKA 495 (592)
Q Consensus 416 ~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~ 495 (592)
+.+++.|+++++.+ .+++..+++.|+++++|++.++|+++..|++.......++++||.+++|||++++++.+++.+.+
T Consensus 253 ~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~ 331 (550)
T 3rix_A 253 LGYLICGFRVVLMY-RFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRF 331 (550)
T ss_dssp HHHHHHTCEEEECS-SCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSCCTTCCEEEECSSCCCHHHHHHHHHHT
T ss_pred HHHHHcCCEEEEeC-CCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccCcccccEEEEecCCCCHHHHHHHHHHc
Confidence 99999999999986 57889999999999999999999999999988766667789999999999999999999999888
Q ss_pred cCCceeccccchhcccccccCCcCCCCccCcccccCCCceEEEEC-CCCCCCCCCCCcceeEEE-----ecccCCCchhh
Q 007715 496 WYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-----FPLYLGASDRL 569 (592)
Q Consensus 496 ~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~v~IlD-~~g~~vp~G~~giGel~v-----~~gY~~~~~~~ 569 (592)
+...++|.||+||+++.++.. .......+++|+|+++++++|+| ++|+++|+|+. |||+| ++||+|+|+.+
T Consensus 332 ~~~~v~~~YG~TE~~~~~~~~-~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~~g~~--GEl~v~g~~v~~GY~~~~~~t 408 (550)
T 3rix_A 332 HLPGIRQGYGLTETTSAILIT-PEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQR--GELCVRGPMIMSGYVNNPEAT 408 (550)
T ss_dssp TCSCCEEEEECGGGSSEEEEC-CTTCCCTTEEEEECTTCEEEEECTTTCCBCCTTCC--EEEEEESTTSCSEETTCHHHH
T ss_pred CCCccccccCcCccccceecC-CCCCCCCCCcccccCCcEEEEEeCCCCcCCCCCCC--eEEEEeCCCcchhhcCChhhh
Confidence 755699999999998654443 33345678999999999999999 67999999995 99999 79999999988
Q ss_pred cccccccccc-ccCcC
Q 007715 570 LNADHEEVYF-RGMPM 584 (592)
Q Consensus 570 ~~~~~~~~~f-~~~~~ 584 (592)
......+.|| +||-+
T Consensus 409 ~~~~~~~g~~~TGDl~ 424 (550)
T 3rix_A 409 NALIDKDGWLHSGDIA 424 (550)
T ss_dssp HHHBCTTSCEEEEEEE
T ss_pred hhhcCCCCCeecCcEE
Confidence 5444334444 44433
No 18
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=1.2e-54 Score=473.90 Aligned_cols=370 Identities=20% Similarity=0.194 Sum_probs=292.6
Q ss_pred CCCCCCceEEEEeccCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecC
Q 007715 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (592)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTy~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~v~a~lA~~k~Ga~~vpld 264 (592)
++++||++|+++.+. +..+++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+++|+++||++
T Consensus 28 a~~~p~~~a~~~~~~----~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~ 103 (541)
T 1v25_A 28 AALFGRKEVVSRLHT----GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTAN 103 (541)
T ss_dssp HHHSTTCEEEEECTT----SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECC
T ss_pred HHhCCCceEEEEecC----CCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEEEecC
Confidence 378999999996321 1234899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEEecceeccCccccchhhHhhcCCC--cEEEEcCCCCCCCCCCccCcccHHHhhccCCCC
Q 007715 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (592)
Q Consensus 265 ~~~~~~~l~~~l~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (592)
|.++.+++.++++++++++||+++... +....+....+. .++++.... ..+...++++......
T Consensus 104 ~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~- 169 (541)
T 1v25_A 104 PRLSPKEIAYILNHAEDKVLLFDPNLL------PLVEAIRGELKTVQHFVVMDEKA-------PEGYLAYEEALGEEAD- 169 (541)
T ss_dssp TTSCHHHHHHHHHHHTCSEEEECGGGH------HHHHHHGGGCSSCCEEEESSSCC-------CTTCEEHHHHCCSCCC-
T ss_pred cccCHHHHHHHHHhCCCcEEEEChhHH------HHHHHHHhhCCCccEEEEecCCC-------CcccccHHHHhhccCC-
Confidence 999999999999999999999987532 222333333332 122222110 0123356665443221
Q ss_pred CCCCCCCCCCCCCCCeEEEEeCCCCCCCCcEEEeCCchHHHHHHH--hhhhcCCCCCCEEEEecccchhchhHHHHHHHH
Q 007715 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAE--GWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFL 420 (592)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~--~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~ 420 (592)
.....+++++||+|||||||+||||+++|+++++.... ....++++++|++++.+|++|+.++..++.+++
T Consensus 170 -------~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~ 242 (541)
T 1v25_A 170 -------PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATL 242 (541)
T ss_dssp -------CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTHHHHHHH
T ss_pred -------cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhHHHHHHHHHh
Confidence 12345689999999999999999999999999876655 234567889999999999999999877889999
Q ss_pred cCCEEEEeCCCCChhhHHHHHHHhCCcEEEccHHHHHHHHhcCcCCCCCCccccEEEEecCCCChhhHHHHHHhccCCce
Q 007715 421 NGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAI 500 (592)
Q Consensus 421 ~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~~~~l 500 (592)
.|+++++.+..+++..+++.|+++++|++.++|+++..|++.......++++||.+++|||++++++.+++ ..+ ++++
T Consensus 243 ~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~-~~~-g~~~ 320 (541)
T 1v25_A 243 VGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARF-ERM-GVEV 320 (541)
T ss_dssp HTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCHHHHHHH-HHT-TCEE
T ss_pred cCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCCcchhccEEEECCCCCCHHHHHHH-HHh-CCce
Confidence 99999998755689999999999999999999999999987644344568999999999999999999888 444 5889
Q ss_pred eccccchhcccccccCCcCC----------CCccCcccccCCCceEEEECCCCCCCCC-C-CCcceeEEE-----ecccC
Q 007715 501 IESCGGTELSSAYIQGSLLQ----------PQAFGAFSTATMTAGLVILDECGVPYPD-D-QPCVGEVGL-----FPLYL 563 (592)
Q Consensus 501 ~n~YG~TE~~~~~~~~~~~~----------~~~~~~iG~p~~~~~v~IlD~~g~~vp~-G-~~giGel~v-----~~gY~ 563 (592)
+|.||+||++.+++...... ....+++|+|++|++++|+|++|+++|. | + +|||+| ++||+
T Consensus 321 ~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~g~~~~~~~~~--~GEl~v~g~~v~~GY~ 398 (541)
T 1v25_A 321 RQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKA--LGEVQLKGPWITGGYY 398 (541)
T ss_dssp EEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEECTTSCBCCSSSCC--CEEEEEESTTSBSSCB
T ss_pred eecccccccccceecccccccccccCccccccccCCCCCcCCCcEEEEECCCCCCCCCCCCc--ceEEEEeCcchhcccc
Confidence 99999999986544432210 0235789999999999999999999995 3 4 599999 88999
Q ss_pred CCchhhcccccccccc-ccCcC
Q 007715 564 GASDRLLNADHEEVYF-RGMPM 584 (592)
Q Consensus 564 ~~~~~~~~~~~~~~~f-~~~~~ 584 (592)
|+|+.+......+.|| +||-+
T Consensus 399 ~~p~~t~~~f~~~g~~~TGDlg 420 (541)
T 1v25_A 399 GNEEATRSALTPDGFFRTGDIA 420 (541)
T ss_dssp TCHHHHHTTBCTTSCEEEEEEE
T ss_pred CChhhhhhhccCCCCeEcCCEE
Confidence 9999885544323444 44433
No 19
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=5.7e-54 Score=470.89 Aligned_cols=394 Identities=19% Similarity=0.229 Sum_probs=306.4
Q ss_pred CCccCCCCcchhhhhhccccc---cCCCCCCceEEEEeccCCCCCCceEecHHHHHHHHHHHHHHHHhh--cCCCCEEEE
Q 007715 164 GGTWLPGSVLNIAECCLLPSN---HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM--FSKGDAIAI 238 (592)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~---~a~~~pd~~Al~~~~~~~~~~~~~~lTy~eL~~~a~~lA~~L~~~--v~~gd~V~i 238 (592)
...|..+...+....++.+++ +++++||++|+++.+. .+..+++||+||+++++++|++|++. +++||+|+|
T Consensus 28 ~~~~~~~~~~~~~~~~l~~~a~~~~a~~~p~~~al~~~~~---~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i 104 (570)
T 3c5e_A 28 WGHQEVPAKFNFASDVLDHWADMEKAGKRPPSPALWWVNG---KGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAV 104 (570)
T ss_dssp CCBCCCCSBCCHHHHTHHHHHHHHHTTSSCCCEEEEEECS---SSCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEE
T ss_pred cccccCCccccHHHHHHHHHHhhccccCCCCceEEEEEcC---CCceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEE
Confidence 335655555566555565543 1234999999998542 11235899999999999999999986 999999999
Q ss_pred EcCCCHHHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCeeEEEEecceeccCccccchhhHhhcCCC--cEEEEcC
Q 007715 239 DMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPA 316 (592)
Q Consensus 239 ~~~~~~e~v~a~lA~~k~Ga~~vpld~~~~~~~l~~~l~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~ 316 (592)
+++|++++++++|||+++|+++||+|+.++.+++.++++++++++||+++... +....+....+. .++++..
T Consensus 105 ~~~n~~e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 178 (570)
T 3c5e_A 105 VLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVI------QEVDTVASECPSLRIKLLVSE 178 (570)
T ss_dssp ECCSCHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTH------HHHHHHGGGCTTCCEEEEESS
T ss_pred EcCCCHHHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHH------HHHHHHhhcCCceeEEEEecc
Confidence 99999999999999999999999999999999999999999999999987532 222222333332 2333321
Q ss_pred CCCCCCCCCccCcccHHHhhccCCCCCCCCCCCCCCCCCCCeEEEEeCCCCCCCCcEEEeCCchHHH--HHHHhhhhcCC
Q 007715 317 IGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIR--CTAEGWAHIDL 394 (592)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~--~~~~~~~~~~~ 394 (592)
.. ..+...++++...... ........++++|||+|||||||+||||+++|+ ++. ...+. ..+++
T Consensus 179 ~~-------~~~~~~~~~~~~~~~~-----~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~~~ 244 (570)
T 3c5e_A 179 KS-------CDGWLNFKKLLNEAST-----THHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWTGL 244 (570)
T ss_dssp SC-------CTTSEEHHHHHHHSCS-----CCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTTSC
T ss_pred cC-------ccccccHHHHhhcccc-----cccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhcCC
Confidence 10 1123356666543322 111233457999999999999999999999999 444 44444 66788
Q ss_pred CCCCEEEEecccchhchhH-HHHHHHHcCCEEEEeCC-CCChhhHHHHHHHhCCcEEEccHHHHHHHHhcCcCCCCCCcc
Q 007715 395 KVGDVYCWPTNLGWVMGPV-ILFSSFLNGATLALYQG-SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTK 472 (592)
Q Consensus 395 ~~~d~~l~~~~~~~~~~~~-~~~~~L~~G~~lvl~~~-~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~s 472 (592)
+++|++++.+|++|+.+++ .++.+|..|+++++.+. .+++..+++.|+++++|++.++|+++..|.+.. ....++++
T Consensus 245 ~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~~~~~ 323 (570)
T 3c5e_A 245 QASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD-LSSYKFPH 323 (570)
T ss_dssp CTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC-TTTCCCTT
T ss_pred CCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc-cccccccc
Confidence 9999999999999999985 68899999999999864 568899999999999999999999999999763 33456899
Q ss_pred ccEEEEecCCCChhhHHHHHHhccCCceeccccchhcccccccCCcCCCCccCcccccCCCceEEEECCCCCCCCCCCCc
Q 007715 473 IRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPC 552 (592)
Q Consensus 473 Lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~v~IlD~~g~~vp~G~~g 552 (592)
||.+++|||++++++.+++...+ +++++|.||+||+++.++.. .......+++|+|++|++++|+|++|+++|+|+.
T Consensus 324 lr~i~~gGe~l~~~~~~~~~~~~-g~~i~~~YG~TE~~~~~~~~-~~~~~~~~~vG~p~~~~~v~i~d~~g~~~~~G~~- 400 (570)
T 3c5e_A 324 LQNCVTVGESLLPETLENWRAQT-GLDIRESYGQTETGLTCMVS-KTMKIKPGYMGTAASCYDVQIIDDKGNVLPPGTE- 400 (570)
T ss_dssp CCEEEEESSCCCHHHHHHHHHHH-SCCCEEEEEETTTEEEEECC-TTSCCCTTCCCEECTTCCEEEECTTSCBCCTTCC-
T ss_pred ceEEEEcCCcCCHHHHHHHHHHh-CCchhhccchhhcccceecC-cccccCCCcccccCCCceEEEECCCCCCCCCCCC-
Confidence 99999999999999999988776 47899999999998654332 2223456899999999999999999999999995
Q ss_pred ceeEEEe----------cccCCCchhhccccccccccccCcCC
Q 007715 553 VGEVGLF----------PLYLGASDRLLNADHEEVYFRGMPMY 585 (592)
Q Consensus 553 iGel~v~----------~gY~~~~~~~~~~~~~~~~f~~~~~~ 585 (592)
|||+|. +||+|+|+.+......+||.+||-++
T Consensus 401 -GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~~~~~~TGDlg~ 442 (570)
T 3c5e_A 401 -GDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLLGDRGI 442 (570)
T ss_dssp -EEEEEECSSBCCTTCCCEETTCHHHHHHTEETTEEEEEEEEE
T ss_pred -CeeEEeccCCCCchhhccccCChhHhhhhhcCCccccceeEE
Confidence 999984 69999999875544444555555443
No 20
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=3.7e-54 Score=470.58 Aligned_cols=370 Identities=18% Similarity=0.136 Sum_probs=294.4
Q ss_pred CCCCCceEEEEeccCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecCC
Q 007715 187 RKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIAD 265 (592)
Q Consensus 187 ~~~pd~~Al~~~~~~~~~~~~~~lTy~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~v~a~lA~~k~Ga~~vpld~ 265 (592)
+++ |++|+++.+.+ +++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|+++||++|
T Consensus 37 ~~~-~~~A~~~~~~~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~la~~~~Gav~vpl~~ 109 (548)
T 2d1s_A 37 AKL-GAIAFTNAVTG------VDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNE 109 (548)
T ss_dssp HHH-TCEEEEETTTC------CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHHTCEEEEECT
T ss_pred ccc-CCceEEEcCCC------CEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhhCCEEeccCC
Confidence 567 99999974210 2899999999999999999999 999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCeeEEEEecceeccCccccchhhHhhcCC--CcEEEEcCCCCCCCCCCccCcccHHHhhccCCCCC
Q 007715 266 SFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP--LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (592)
Q Consensus 266 ~~~~~~l~~~l~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (592)
.++.+++.++++++++++||+++... +....+....+ ..++++.... ...+...|+++......
T Consensus 110 ~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~-- 175 (548)
T 2d1s_A 110 IYTLRELVHSLGISKPTIVFSSKKGL------DKVITVQKTVTTIKTIVILDSKV------DYRGYQCLDTFIKRNTP-- 175 (548)
T ss_dssp TSCHHHHHHHHHHHCCSEEEECTTTH------HHHHHHHHHSTTCCEEEETTCSS------CBTTBCBHHHHHHHTSC--
T ss_pred CCCHHHHHHHHHhcCCeEEEEcHHHH------HHHHHHhcCCCCCCEEEEeCCcc------cccccccHHHHHhcCcc--
Confidence 99999999999999999999998532 12222222232 1222222110 00122346666544321
Q ss_pred CCCCCCCCCC------CCCCeEEEEeCCCCCCCCcEEEeCCchHHHHHHHhhhh---cCCCCCCEEEEecccchhchhHH
Q 007715 344 RPNYYSPVYN------PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH---IDLKVGDVYCWPTNLGWVMGPVI 414 (592)
Q Consensus 344 ~~~~~~~~~~------~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~d~~l~~~~~~~~~~~~~ 414 (592)
. ..+.... .++++|||+|||||||+||||+++|+++.+.+.+.... ++++++|++++.+|++|+.+++.
T Consensus 176 ~--~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~ 253 (548)
T 2d1s_A 176 P--GFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFT 253 (548)
T ss_dssp T--TCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHH
T ss_pred c--cCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHH
Confidence 0 0111111 23899999999999999999999999998888776655 67889999999999999999866
Q ss_pred -HHHHHHcCCEEEEeCCCCChhhHHHHHHHhCCcEEEccHHHHHHHHhcCcCCCCCCccccEEEEecCCCChhhHHHHHH
Q 007715 415 -LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSS 493 (592)
Q Consensus 415 -~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~ 493 (592)
++.++ .|+++++.+ .+++..+++.|+++++|++.++|+++..|.+.......++++||.+++|||++++++.+++.+
T Consensus 254 ~~~~~l-~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~ 331 (548)
T 2d1s_A 254 TLGYLI-CGFRVVMLT-KFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVAR 331 (548)
T ss_dssp HHHHHH-TTCEEEECC-CCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTTCCEEEECSSCCCHHHHHHHHH
T ss_pred HHHHHh-cCcEEEEcC-CCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccceeEEEEcCccCCHHHHHHHHH
Confidence 55666 999999987 578999999999999999999999999999876555567899999999999999999999998
Q ss_pred hccCCceeccccchhcccccccCCcCCCCccCcccccCCCceEEEEC-CCCCCCCCCCCcceeEEE-----ecccCCCch
Q 007715 494 KAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-----FPLYLGASD 567 (592)
Q Consensus 494 ~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~v~IlD-~~g~~vp~G~~giGel~v-----~~gY~~~~~ 567 (592)
.+++++++|.||+||++..++. ........+++|+|+++++++|+| ++|+++|+|+. |||+| ++||+|+|+
T Consensus 332 ~~~~~~i~~~YG~TE~~~~~~~-~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~--GEl~v~g~~v~~GY~~~~~ 408 (548)
T 2d1s_A 332 RFNLPGVRQGYGLTETTSAIII-TPEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRR--GEVCVKGPMLMKGYVNNPE 408 (548)
T ss_dssp HTTCSCCEEEEECGGGSSEEEE-CCTTCCCTTCCBEECTTCEEEEECTTTCCBCCTTCC--EEEEEESTTSCSEETTCHH
T ss_pred HcCCCceeeccccccccceeee-cCcccCCCCCCCccCCCceEEEEeCCcCccCCCCCC--eEEEECCHHHhhhhcCChH
Confidence 8877889999999999865443 222334568999999999999999 78999999995 99999 789999999
Q ss_pred hhcccccccccc-ccCcC
Q 007715 568 RLLNADHEEVYF-RGMPM 584 (592)
Q Consensus 568 ~~~~~~~~~~~f-~~~~~ 584 (592)
.+......+.|| +||-+
T Consensus 409 ~t~~~f~~~g~~~TGDl~ 426 (548)
T 2d1s_A 409 ATKELIDEEGWLHTGDIG 426 (548)
T ss_dssp HHHHHBCTTSCEEEEEEE
T ss_pred HhhhcccCCcEEEccCEE
Confidence 875444333444 44433
No 21
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=2.7e-54 Score=468.03 Aligned_cols=362 Identities=13% Similarity=0.058 Sum_probs=289.5
Q ss_pred CCCCCCceEEEEeccCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecC
Q 007715 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (592)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTy~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~v~a~lA~~k~Ga~~vpld 264 (592)
++++||++|+++.++ ++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|+++||+|
T Consensus 16 a~~~pd~~Al~~~~~--------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl~ 87 (509)
T 3ivr_A 16 AALFPDRTAFMVDGV--------RLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAILLPVN 87 (509)
T ss_dssp HHHSTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEECC
T ss_pred HHHCCCceEEEECCc--------EEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEEecC
Confidence 478999999999776 999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEEecceeccCccccchhhHhhcCCCcEEEEcCCCCCCCCCCccCcccHHHhhccCCCCCC
Q 007715 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 344 (592)
Q Consensus 265 ~~~~~~~l~~~l~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (592)
|.++.+++.++++++++++||++.... ..........+....++.... ....+.++......
T Consensus 88 ~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~--- 149 (509)
T 3ivr_A 88 YRLNADEIAFVLGDGAPSVVVAGTDYR------DIVAGVLPSLGGVKKAYAIGD---------GSGPFAPFKDLASD--- 149 (509)
T ss_dssp TTSCHHHHHHHHHHHCEEEEEECSTTH------HHHHHHGGGCSSCCEEEESSC---------CCSSCEEGGGTCCC---
T ss_pred CCCCHHHHHHHHHhcCceEEEECcchh------hhHHhhhcccCCceEEEEcCC---------CCcChhhHhhccCC---
Confidence 999999999999999999999987632 111112222222212221111 11122222221111
Q ss_pred CCCCCCCCCCCCCeEEEEeCCCCCCCCcEEEeCCchHHHHHHHhhhhcCCCCCCEEEEecccchhchhHHHHHHHHcCCE
Q 007715 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGAT 424 (592)
Q Consensus 345 ~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~ 424 (592)
.........++|++||+|||||||.||||+++|+++++.+.+....++++++|++++.+|++|+.++..++.+++.|++
T Consensus 150 -~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~ 228 (509)
T 3ivr_A 150 -TPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGA 228 (509)
T ss_dssp -SCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCE
T ss_pred -CCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhHHHHHHHHHHhCCc
Confidence 1122334567999999999999999999999999999998888888999999999999999999999887777777877
Q ss_pred EEEeCCCCChhhHHHHHHHhCCcEEEccHHHHHHHHhcCcCCCCCCccccEEEEecCCCChhhHHHHHHhccCCceeccc
Q 007715 425 LALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESC 504 (592)
Q Consensus 425 lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~Y 504 (592)
.++.. .+++..+++.|+++++|++.++|+++..|++.. ...++++||.++.+|++ ++.+++...+++++++|.|
T Consensus 229 ~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~--~~~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~Y 302 (509)
T 3ivr_A 229 SVIAA-KFDPAQAARDIEAHKVTVMAEFAPMLGNILDQA--APAQLASLRAVTGLDTP---ETIERFEATCPNATFWATF 302 (509)
T ss_dssp EEECS-SCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHC--CGGGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEEEE
T ss_pred EEEec-ccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcc--cccchhhhheecccCCh---HHHHHHHHhcCCCeEEccc
Confidence 77776 678999999999999999999999999998875 34557899999999987 7778888888789999999
Q ss_pred cchhcccccccCCcCCCCccCcccccCCCceEEEECCCCCCCCCCCCcceeEEE-----ecccCCCchhhcccccccccc
Q 007715 505 GGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVYF 579 (592)
Q Consensus 505 G~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~v~IlD~~g~~vp~G~~giGel~v-----~~gY~~~~~~~~~~~~~~~~f 579 (592)
|+||++++++..... ....++|+|++|++++|+|++|+++|+|++ |||+| ++||+++|+.+.......||-
T Consensus 303 G~TE~~~~~~~~~~~--~~~~~~G~p~~~~~~~i~d~~~~~~~~g~~--GEl~v~g~~~~~gY~~~~~~t~~~f~~g~~~ 378 (509)
T 3ivr_A 303 GQSETSGLSTFAPYR--DRPKSAGRPLFWRTVAVVDAEDRPLPPGEV--GEIVLRGPTVFKGYWNNAAATQHAFRNGWHH 378 (509)
T ss_dssp EEGGGTEEEEEEEGG--GSTTSCCEECTTCEEEEECTTSCBCCTTCC--EEEEEESTTSCCEETTCHHHHHHHTGGGSEE
T ss_pred CccccccccccCccc--cCCCcccccCCCcEEEEECCCCCCCCCCCc--eEEEEecCCccccccCCHHHhHHHhhcCCcc
Confidence 999998754443222 233569999999999999999999999995 99999 889999999875444344444
Q ss_pred ccCcC
Q 007715 580 RGMPM 584 (592)
Q Consensus 580 ~~~~~ 584 (592)
+||-+
T Consensus 379 TGDl~ 383 (509)
T 3ivr_A 379 TGDMG 383 (509)
T ss_dssp EEEEE
T ss_pred cccEE
Confidence 44443
No 22
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=8.4e-54 Score=466.39 Aligned_cols=380 Identities=19% Similarity=0.193 Sum_probs=292.0
Q ss_pred chhhhhhccccccCCCCCCceEEEEeccCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHH
Q 007715 173 LNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYL 251 (592)
Q Consensus 173 ~~~~~~~~~~~~~a~~~pd~~Al~~~~~~~~~~~~~~lTy~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~v~a~l 251 (592)
.+.....+.+++ + +||++|+++.+. ++||+||+++++++|++|+++ +++||+|+|+++|++++++++|
T Consensus 23 ~~~~~~~l~~~~--~-~p~~~A~~~~~~--------~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~l 91 (529)
T 2v7b_A 23 FNFAAYLFRLNE--T-RAGKTAYIDDTG--------STTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFL 91 (529)
T ss_dssp CCHHHHHHHHTG--G-GTTSEEEECSSC--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHH
T ss_pred eeHHHHHHHhhh--c-cCCceEEEeCCC--------CccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHH
Confidence 344444554444 6 999999998765 999999999999999999999 9999999999999999999999
Q ss_pred HHHHhCCeEEecCCCCCHHHHHHHHHhcCeeEEEEecceeccCccccchhhHhhcCC---CcEEEEcCCCCCCCCCCccC
Q 007715 252 AIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP---LKAIVLPAIGNDVGIPLREQ 328 (592)
Q Consensus 252 A~~k~Ga~~vpld~~~~~~~l~~~l~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~ 328 (592)
||+++|+++||+++.++.+++.+++++++++++|+++... +......+..+ ..++++...... ...
T Consensus 92 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 160 (529)
T 2v7b_A 92 GALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALV------QNVTQALESAEHDGCQLIVSQPRESE-----PRL 160 (529)
T ss_dssp HHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGH------HHHHHHHHCC---CCEEEEECC-----------C
T ss_pred HHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhh------hHHHHHHhhccccCceEEEecccccc-----ccc
Confidence 9999999999999999999999999999999999987532 12222222111 222222211000 001
Q ss_pred cccHHHhhccCCCCCCCCCCCCCCCCCCCeEEEEeCCCCCCCCcEEEeCCchH-HHHHHHhhhhcCCCCCCEEEEecccc
Q 007715 329 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSS-IRCTAEGWAHIDLKVGDVYCWPTNLG 407 (592)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l-~~~~~~~~~~~~~~~~d~~l~~~~~~ 407 (592)
...++++...... ........++|++||+|||||||+||||+++|+++ .+........++++++|++++.+|++
T Consensus 161 ~~~~~~~~~~~~~-----~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~ 235 (529)
T 2v7b_A 161 APLFEELIDAAAP-----AAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLF 235 (529)
T ss_dssp CCBHHHHHHTSCC-----CSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTT
T ss_pred ccchhhhhccCCC-----cccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHH
Confidence 2246665542221 11223456799999999999999999999999998 56666655667889999999999999
Q ss_pred hhchhH-HHHHHHHcCCEEEEeCCCCChhhHHHHHHHhCCcEEEccHHHHHHHHhcCcCCCCCCccccEEEEecCCCChh
Q 007715 408 WVMGPV-ILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVD 486 (592)
Q Consensus 408 ~~~~~~-~~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~ 486 (592)
|+.+++ .++.+|..|+++++.+..+++..+++.|+++++|++.++|+++..|++..........+||.+++|||+++++
T Consensus 236 ~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gGe~l~~~ 315 (529)
T 2v7b_A 236 FAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARADVAIRICTSAGEALPRE 315 (529)
T ss_dssp SHHHHHHHTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCCCGGGCCCCEEEECSSCCCHH
T ss_pred HHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcccccccCCceEEEEEcCCCCCHH
Confidence 999985 4678999999999986567889999999999999999999999999876533332124899999999999999
Q ss_pred hHHHHHHhccCCceeccccchhcccccccCCcCCCCccCcccccCCCceEEEECCCCCCCCCCCCcceeEEE-----ecc
Q 007715 487 DDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPL 561 (592)
Q Consensus 487 ~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~v~IlD~~g~~vp~G~~giGel~v-----~~g 561 (592)
+.+++.+.+ +++++|.||+||++..++.... .....+++|+|++|++++|+|++|+++|+|++ |||+| +.|
T Consensus 316 ~~~~~~~~~-g~~i~~~YG~TE~~~~~~~~~~-~~~~~~~~G~p~~~~~~~i~d~~g~~~~~g~~--GEl~v~g~~~~~g 391 (529)
T 2v7b_A 316 IGERFTAHF-GCEILDGIGSTEMLHIFLSNRA-GAVEYGTTGRPVPGYEIELRDEAGHAVPDGEV--GDLYIKGPSAAVM 391 (529)
T ss_dssp HHHHHHHHH-SCCEEEEEECTTTSSEEEECCT-TCCCTTSCCEECTTCEEEEECTTSCBCCTTSC--EEEEEECTTCCCC
T ss_pred HHHHHHHHh-CCceeeeEchhhcCceeecccc-CCCccCCcccCCCCCEEEEECCCCCCCCCCCc--cEEEEecCCcccc
Confidence 999988876 4889999999999654433322 22456799999999999999999999999995 99999 789
Q ss_pred cCCCchhhccccccccccccCc
Q 007715 562 YLGASDRLLNADHEEVYFRGMP 583 (592)
Q Consensus 562 Y~~~~~~~~~~~~~~~~f~~~~ 583 (592)
|+++|+.+......+||-+||-
T Consensus 392 Y~~~~~~t~~~f~~~~~~TGDl 413 (529)
T 2v7b_A 392 YWNNREKSRATFLGEWIRSGDK 413 (529)
T ss_dssp BTTCHHHHHHHEETTEEEEEEE
T ss_pred cCCChHHHHHhhhcCCcccCce
Confidence 9999998744433344444443
No 23
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=5.9e-54 Score=470.10 Aligned_cols=335 Identities=18% Similarity=0.164 Sum_probs=273.0
Q ss_pred CCCCCCceEEEEeccCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecC
Q 007715 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (592)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTy~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~v~a~lA~~k~Ga~~vpld 264 (592)
++++||++|+++.++ ++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|+++||+|
T Consensus 49 a~~~p~~~Al~~~~~--------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~ 120 (563)
T 1amu_A 49 VSKRPNNVAIVCENE--------QLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPID 120 (563)
T ss_dssp HHHCTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECC
T ss_pred HHHCCCCeEEEeCCc--------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEeC
Confidence 478999999998776 999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEEecceeccCccccchhhHhhcCC--CcEEEEcCCCCCCCCCCccCcccHHHhhccCCCC
Q 007715 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP--LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (592)
Q Consensus 265 ~~~~~~~l~~~l~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (592)
|.++.+++.++++++++++||+++... ..+ .... ..+..+.. . .+. . ...
T Consensus 121 ~~~~~~~l~~il~~~~~~~li~~~~~~---------~~~-~~~~~~~~~~~~~~--~-----------~~~---~-~~~- 172 (563)
T 1amu_A 121 IEYPKERIQYILDDSQARMLLTQKHLV---------HLI-HNIQFNGQVEIFEE--D-----------TIK---I-REG- 172 (563)
T ss_dssp TTSCHHHHHHHHHHHTCSEEEECGGGH---------HHH-TTSCCCSEEEECCC--S-----------TTT---T-SCC-
T ss_pred CCCcHHHHHHHHHhcCCCEEEEcCchh---------hhh-hhccccCceeeecc--h-----------hhc---c-ccC-
Confidence 999999999999999999999987532 111 1111 11111110 0 000 0 000
Q ss_pred CCCCCCCCCCCCCCCeEEEEeCCCCCCCCcEEEeCCchHHHHHHHhhhhcCCCCCCEEEEecccchhchhHHHHHHHHcC
Q 007715 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNG 422 (592)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G 422 (592)
........++|+|||+|||||||+||||+++|+++.+.+.+....++++++|++++.+|++|+.+++.++.+|+.|
T Consensus 173 ----~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G 248 (563)
T 1amu_A 173 ----TNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALLTG 248 (563)
T ss_dssp ----SCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHHHHHHTTT
T ss_pred ----ccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHHHHHHHHCC
Confidence 0111234578999999999999999999999999998888877888999999999999999999998899999999
Q ss_pred CEEEEeCCC--CChhhHHHHHHHhCCcEEEccHHHHHHHHhcCcCCCCCCccccEEEEecCCCChhhHHHHHHhccCCce
Q 007715 423 ATLALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAI 500 (592)
Q Consensus 423 ~~lvl~~~~--~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~~~~l 500 (592)
+++++.+.. .++..+++.|+++++|++.++|+++..|... .+++||.+++|||++++++.+++... +++
T Consensus 249 ~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------~~~~lr~~~~gG~~l~~~~~~~~~~~---~~~ 319 (563)
T 1amu_A 249 ASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE------RILSIQTLITAGSATSPSLVNKWKEK---VTY 319 (563)
T ss_dssp CEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT------TCCSCSEEEEESSCCCHHHHHHHTTT---SEE
T ss_pred CEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc------ccccccEEEEEEecCCHHHHHHHHhC---CeE
Confidence 999998642 4788999999999999999999999877432 36899999999999999999888754 689
Q ss_pred eccccchhcccccccCCcC--CCCccCcccccCCCceEEEECCCCCCCCCCCCcceeEEE-----ecccCCCchhhcc
Q 007715 501 IESCGGTELSSAYIQGSLL--QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLN 571 (592)
Q Consensus 501 ~n~YG~TE~~~~~~~~~~~--~~~~~~~iG~p~~~~~v~IlD~~g~~vp~G~~giGel~v-----~~gY~~~~~~~~~ 571 (592)
+|.||+||++++++..... ......++|+|++|++++|+|++|+++|+|+ +|||+| ++||+|+|+.|..
T Consensus 320 ~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~g~--~GEl~v~g~~v~~GY~~~pe~t~~ 395 (563)
T 1amu_A 320 INAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGE--AGELCIGGEGLARGYWKRPELTSQ 395 (563)
T ss_dssp EEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEECTTSCBCCTTC--EEEEEEEETTCCCEETTCHHHHHH
T ss_pred EEEECcCHHhHhheeeecccccCCCCCcccceeCCCEEEEECCCcCCCCCCC--cEEEEEechhhChhhCCCchhhhh
Confidence 9999999998654432221 1235578999999999999999999999999 599999 7899999997743
No 24
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=3.7e-54 Score=468.39 Aligned_cols=345 Identities=15% Similarity=0.111 Sum_probs=285.0
Q ss_pred CCCCCCceEEEEeccCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecC
Q 007715 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (592)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTy~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~v~a~lA~~k~Ga~~vpld 264 (592)
++++||++|+++.++ ++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|+++||++
T Consensus 14 a~~~p~~~a~~~~~~--------~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~vpl~ 85 (521)
T 3l8c_A 14 AQTQADFPVYDCLGE--------RRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKSGHAYIPVD 85 (521)
T ss_dssp HHHSTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHCCCCcceecCCC--------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEecC
Confidence 478999999999877 999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEEecceeccCccccchhhHhhcCCCcEEEEcCCCCCCCCCCccCcccHHHhhccCCCCCC
Q 007715 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 344 (592)
Q Consensus 265 ~~~~~~~l~~~l~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (592)
+.++.+++.++++++++++||++++....... . ....+.++...... .
T Consensus 86 ~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~--------------~----------------~~~~~~~~~~~~~~--~ 133 (521)
T 3l8c_A 86 VHSAPERILAIIEIAKPSLIIAIEEFPLTIEG--------------I----------------SLVSLSEIESAKLA--E 133 (521)
T ss_dssp TTSCHHHHHHHHHHSCCSEEEESSCCCSCCTT--------------S----------------EEEEHHHHHHHHHH--T
T ss_pred ccccHHHHHHHHHhCCCCEEEecCcccccccc--------------C----------------cccchhhhhhcccc--c
Confidence 99999999999999999999998764211000 0 00112221111000 0
Q ss_pred CCCCCCCCCCCCCeEEEEeCCCCCCCCcEEEeCCchHHHHHHHhhhh--cCCCCCCEEEEecccchhchhHHHHHHHHcC
Q 007715 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH--IDLKVGDVYCWPTNLGWVMGPVILFSSFLNG 422 (592)
Q Consensus 345 ~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~--~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G 422 (592)
..........+++++||+|||||||.||||+++|+++++...+.... +++.+++++++..+++|+.+.+.++.+++.|
T Consensus 134 ~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G 213 (521)
T 3l8c_A 134 MPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVMYWAPTLALG 213 (521)
T ss_dssp CCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHHHHHHHHHTT
T ss_pred CCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHHHHHHHHhcC
Confidence 00112234567999999999999999999999999998877766554 6788999999999999999998899999999
Q ss_pred CEEEEeCCC--CChhhHHHHHHHhCCcEEEccHHHHHHHHhcCcCCCCCCccccEEEEecCCCChhhHHHHHHhccCCce
Q 007715 423 ATLALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAI 500 (592)
Q Consensus 423 ~~lvl~~~~--~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~~~~l 500 (592)
+++++.+.. .++..+++.|+++++|++.++|+++..+.........++++||.+++|||++++++.+++.+.++++++
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i 293 (521)
T 3l8c_A 214 GTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHFYFDGEELTVSTARKLFERFPSAKI 293 (521)
T ss_dssp CEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEE
T ss_pred CEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhccccccCccceEEEEecccCCHHHHHHHHHHCCCceE
Confidence 999998743 378899999999999999999999999988766566678999999999999999999999999888999
Q ss_pred eccccchhcccccccCCcC----CCCccCcccccCCCceEEEECCCCCCCCCCCCcceeEEE-----ecccCCCchhhcc
Q 007715 501 IESCGGTELSSAYIQGSLL----QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLN 571 (592)
Q Consensus 501 ~n~YG~TE~~~~~~~~~~~----~~~~~~~iG~p~~~~~v~IlD~~g~~vp~G~~giGel~v-----~~gY~~~~~~~~~ 571 (592)
+|.||+||+++.++..... .....+++|+|++|++++|+|++|+++|+|++ |||+| +.||+|+|+.+..
T Consensus 294 ~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~g~~~~~g~~--GEl~v~g~~v~~GY~~~~~~t~~ 371 (521)
T 3l8c_A 294 INAYGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIIDEDGKELSSGEQ--GEIIVTGPAVSKGYLNNPEKTAE 371 (521)
T ss_dssp EEEECCGGGSSCSEEEEECHHHHHHCSSCEEEEECTTSCEEEECTTSCBCCTTCC--EEEEEESTTSCSCBTTCHHHHHH
T ss_pred EeCcCccHHhhhhceeecccccccCCCccccccccCCCEEEEECCCcCCCCCCCc--eEEEecccccChhhcCCchHhhc
Confidence 9999999998654432221 12245689999999999999999999999995 99999 7899999998744
Q ss_pred c
Q 007715 572 A 572 (592)
Q Consensus 572 ~ 572 (592)
.
T Consensus 372 ~ 372 (521)
T 3l8c_A 372 A 372 (521)
T ss_dssp H
T ss_pred c
Confidence 3
No 25
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=7.6e-55 Score=469.08 Aligned_cols=355 Identities=14% Similarity=0.118 Sum_probs=274.9
Q ss_pred CCCCCCceEEEEeccC-CCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEec
Q 007715 186 RRKEDNTVAIVWREDR-CDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (592)
Q Consensus 186 a~~~pd~~Al~~~~~~-~~~~~~~~lTy~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~v~a~lA~~k~Ga~~vpl 263 (592)
++++||++|+++.+.. ...+..+++||+||+++++++|++|+++ + +||+|+|+++|++++++++|||+++|+++|||
T Consensus 34 a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl 112 (480)
T 3t5a_A 34 ARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAFLGALQAGRIAVPL 112 (480)
T ss_dssp HHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHHHHHHHTTCEEEEE
T ss_pred HHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHHHHHHHhCcEEEee
Confidence 4789999999987621 1123346999999999999999999999 8 99999999999999999999999999999999
Q ss_pred CC---CCCHHHHHHHHHhcCeeEEEEecceeccCccccchhhHhhcCCC--cEEEEcCCCCCCCCCCccCcccHHHhhcc
Q 007715 264 AD---SFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLSS 338 (592)
Q Consensus 264 d~---~~~~~~l~~~l~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 338 (592)
++ .++.+++.++++++++++||+++... +.........+. ...++. ++.+...
T Consensus 113 ~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~ 170 (480)
T 3t5a_A 113 SVPQGGVTDERSDSVLSDSSPVAILTTSSAV------DDVVQHVARRPGESPPSIIE----------------VDLLDLD 170 (480)
T ss_dssp CSCCSCTTCCHHHHHHHHHCCSEEEECTTTH------HHHHHTCC------CCEEEE----------------GGGSCTT
T ss_pred CCCCccchHHHHHHHHHhCCCCEEEeChhHH------HHHHHHHhccccccccceeE----------------ecccccc
Confidence 99 88899999999999999999998532 111111111110 001110 1111000
Q ss_pred CCCCCCCCCCCCCCCCCCCeEEEEeCCCCCCCCcEEEeCCchHHHHHHHhhhhcCCCC------CCEEEEecccchhchh
Q 007715 339 VDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKV------GDVYCWPTNLGWVMGP 412 (592)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~------~d~~l~~~~~~~~~~~ 412 (592)
. ..........++++|||+|||||||+||||+++|+++++.+.+....+.+.+ +|++++.+|++|+.++
T Consensus 171 ~-----~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~ 245 (480)
T 3t5a_A 171 A-----PNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHDMGL 245 (480)
T ss_dssp C-----C---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTTCCCTTEEEEECCCTTSTTHH
T ss_pred c-----ccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccccCCCCCCeEEEeCCCcCccHH
Confidence 0 0111223456789999999999999999999999999988888777777777 8999999999999996
Q ss_pred -HHHHHHHHcCCEEEEeCCC---CChhhHHHHHHHhCCcEEEccHHHHHHHHhc----CcCCCCCCccccEEEEecCCCC
Q 007715 413 -VILFSSFLNGATLALYQGS---PLERSFGKFVQDAGVTVLGTVPSLVKAWRNT----NCLEGLDWTKIRSFASTGETSN 484 (592)
Q Consensus 413 -~~~~~~L~~G~~lvl~~~~---~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~----~~~~~~~l~sLr~v~~gGe~l~ 484 (592)
+.++.+|+.|+++++.+.. .++..+++.|+++++| +..+|+++..++.. ......++++||.+++|||+++
T Consensus 246 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~~l~~lr~i~~gG~~l~ 324 (480)
T 3t5a_A 246 VIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAGRDLGNILTILSGSERVQ 324 (480)
T ss_dssp HHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTCCCTTCCEEEECCTTCC
T ss_pred HHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCcccccccchhhhheeeecCCcCC
Confidence 5789999999999998632 3788999999999999 88999998888763 2334567899999999999999
Q ss_pred hhhHHHHHHhcc-----CCceeccccchhcccccccCCcCC------------------------CCccCcccccCCCce
Q 007715 485 VDDDLWLSSKAW-----YNAIIESCGGTELSSAYIQGSLLQ------------------------PQAFGAFSTATMTAG 535 (592)
Q Consensus 485 ~~~~~~~~~~~~-----~~~l~n~YG~TE~~~~~~~~~~~~------------------------~~~~~~iG~p~~~~~ 535 (592)
+++.+++.+.++ +++++|.||+||+++.++...... ....+++|+|++ ++
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~ 403 (480)
T 3t5a_A 325 AATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PI 403 (480)
T ss_dssp HHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SE
T ss_pred HHHHHHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CE
Confidence 999999988873 457999999999987655433211 123468999999 99
Q ss_pred EEEECCC-CCCCCCCCCcceeEEE-----ecccCCCchhhccc
Q 007715 536 LVILDEC-GVPYPDDQPCVGEVGL-----FPLYLGASDRLLNA 572 (592)
Q Consensus 536 v~IlD~~-g~~vp~G~~giGel~v-----~~gY~~~~~~~~~~ 572 (592)
++|+|++ |++||+|++ |||+| ++||+|+|+.|.+.
T Consensus 404 ~~ivd~~~g~~~~~g~~--GEl~v~g~~v~~GY~~~pe~t~~~ 444 (480)
T 3t5a_A 404 VRIVDSDTCIECPDGTV--GEIWVHGDNVANGYWQKPDESERT 444 (480)
T ss_dssp EEEEETTTTEECCTTBC--EEEEEESTTSCCCBTTBHHHHHHH
T ss_pred EEEEcCCCCcCCCCCCE--EEEEEeCCccccccccCcchhHHH
Confidence 9999966 899999995 99999 89999999987443
No 26
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=1.9e-53 Score=460.71 Aligned_cols=359 Identities=16% Similarity=0.103 Sum_probs=282.3
Q ss_pred CCCCCCceEEEEeccCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecC
Q 007715 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (592)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTy~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~v~a~lA~~k~Ga~~vpld 264 (592)
++++||++|+++.+.+ +++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+++|+++||+|
T Consensus 12 a~~~p~~~a~~~~~~~------~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~ 85 (504)
T 1t5h_X 12 ATRAPDHCALAVPARG------LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLN 85 (504)
T ss_dssp HHHCTTSEEEEETTTT------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEEEEEC
T ss_pred HHhCCCceEEEEcCCC------ceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Confidence 3789999999986211 3899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEE--ecceeccCccccchhhHhhcCCCcEEEEcCCCCCCCCCCccCcccHHHhhccCCCC
Q 007715 265 DSFAAREIATRLRVSKAKGIFT--QDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (592)
Q Consensus 265 ~~~~~~~l~~~l~~~~~~~iv~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (592)
|.++.+++.+++++++++++|+ ++.. ...+........ ++ .++++.......
T Consensus 86 ~~~~~~~l~~~l~~~~~~~~i~~~~~~~---------~~~~~~~~~~~~-~~----------------~~~~~~~~~~~~ 139 (504)
T 1t5h_X 86 PRLKSAELAELIKRGEMTAAVIAVGRQV---------ADAIFQSGSGAR-II----------------FLGDLVRDGEPY 139 (504)
T ss_dssp TTSCHHHHHHHHHHTTCSEEEECC--CH---------HHHHHHHCCCCE-EE----------------EGGGTEETTEEC
T ss_pred CccChHHHHHHHhhcCCcEEEEecchhh---------hhhhhhccccce-eE----------------EecchhhcCccc
Confidence 9999999999999999999999 5532 111101111111 11 122222211000
Q ss_pred CCCCCCCCCCCCCCCeEEEEeCCCCCCCCcEEEeCCchHHHHHHHhhhhcCC--CCCCEEEEecccchhchh-HHHHHHH
Q 007715 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDL--KVGDVYCWPTNLGWVMGP-VILFSSF 419 (592)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~--~~~d~~l~~~~~~~~~~~-~~~~~~L 419 (592)
............++++|||+|||||||+||||+++|+++.+.+.+....+++ .++|++++..|++|+.++ +.++.+|
T Consensus 140 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l 219 (504)
T 1t5h_X 140 SYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAAL 219 (504)
T ss_dssp CCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSHHHHTTTHHHHH
T ss_pred ccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhcchHHHHHHHHH
Confidence 0000111123457899999999999999999999999999888877777777 889999999999999998 5688999
Q ss_pred HcCCEEEEeCCCCChhhHHHHHHHhCCcEEEccHHHHHHHHhcC-c-CCCCCCccccEEEEecCCCChhhHHHHHHhccC
Q 007715 420 LNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTN-C-LEGLDWTKIRSFASTGETSNVDDDLWLSSKAWY 497 (592)
Q Consensus 420 ~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~-~-~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~~ 497 (592)
+.|+++++.+ .+++..+++.|+++++|+++++|+++..|.+.. . ....++++||.+++|||++++++.+++.+.++
T Consensus 220 ~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~- 297 (504)
T 1t5h_X 220 ALDGTYVVVE-EFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLP- 297 (504)
T ss_dssp HTTCEEEECS-SCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTTCCHHHHHHHHHHCC-
T ss_pred HcCceEEeCC-CCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEEcCCcCCHHHHHHHHHhcC-
Confidence 9999999987 478899999999999999999999999998764 2 23456899999999999999999999988875
Q ss_pred CceeccccchhcccccccCCcCCCCccCcccccCCCceEEEECCCC---CCCCCCCCcceeEEEe------cccCCCchh
Q 007715 498 NAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECG---VPYPDDQPCVGEVGLF------PLYLGASDR 568 (592)
Q Consensus 498 ~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~v~IlD~~g---~~vp~G~~giGel~v~------~gY~~~~~~ 568 (592)
++++|.||+||+++. .. .. ....+++|+|+++++++|+|+++ +++|+|+. |||+|. +||+|+|+.
T Consensus 298 ~~~~~~YG~TE~~~~-~~-~~--~~~~~~~g~p~~~~~~~i~~~~~~~~~~~~~g~~--GEl~v~gg~~~~~GY~~~~~~ 371 (504)
T 1t5h_X 298 GEKVNIYGTTEAMNS-LY-MR--QPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEE--GELIVAASDSAFVGYLNQPQA 371 (504)
T ss_dssp SEEEEEEEETTTEEE-EE-EE--SCSSSSEEBCCTTCCEEEECTTSCTTCBCCTTCC--EEEEEECCTTSCCCBTTCHHH
T ss_pred cceeeeecccccccc-cc-cc--CCCCCccccCCCCCceeEEeccCCCCCcCCCCCc--ceEEEeCCceeeceecCCchh
Confidence 789999999999432 22 11 34567899999999999999888 99999995 999994 799999998
Q ss_pred hccccccccccccCcC
Q 007715 569 LLNADHEEVYFRGMPM 584 (592)
Q Consensus 569 ~~~~~~~~~~f~~~~~ 584 (592)
+......+||-+||-+
T Consensus 372 t~~~f~~g~~~TGDlg 387 (504)
T 1t5h_X 372 TAEKLQDGWYRTSDVA 387 (504)
T ss_dssp HHHHEETTEEEEEEEE
T ss_pred hhhhhcCCccccCcEE
Confidence 7544433344444443
No 27
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=1.1e-52 Score=463.95 Aligned_cols=351 Identities=14% Similarity=0.118 Sum_probs=280.1
Q ss_pred CCCCCCceEEEEeccCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecC
Q 007715 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (592)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTy~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~v~a~lA~~k~Ga~~vpld 264 (592)
++++||++|+++.+. +..+++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+++|+++||++
T Consensus 21 a~~~p~~~a~~~~~~----~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~ 96 (590)
T 3kxw_A 21 ALHSPNKKSCTFLNK----ELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPIY 96 (590)
T ss_dssp HHHCTTSEEEEEEET----TEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHhCCCCeEEEEEcC----CeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHHhCcEEEEec
Confidence 478999999998642 1234999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCC---HHHHHHHHHhcCeeEEEEecceeccCccccchhhHh-hcCCC--cEEEEcCCCCCCCCCCccCcccHHHhhcc
Q 007715 265 DSFA---AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVL-GAAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLSS 338 (592)
Q Consensus 265 ~~~~---~~~l~~~l~~~~~~~iv~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 338 (592)
|.++ .+++.++++++++++++++...... ..... ...+. ...++. .+.+...
T Consensus 97 ~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~------~~~~~~~~~~~~~~~~~~~----------------~~~~~~~ 154 (590)
T 3kxw_A 97 PPAQEKLLDKAQRIVTNSKPVIVLMIADHIKK------FTADELNTNPKFLKIPAIA----------------LESIELN 154 (590)
T ss_dssp CCCSHHHHHHHHHHHHHHCCSEEEECHHHHHH------HCC-----CCEETTEEEEE----------------GGGCCGG
T ss_pred CCCchHHHHHHHHHHHhCCCCEEEeCHHHHHH------HHHhhhhhcccccccceee----------------chhcccc
Confidence 9884 5789999999999999998753210 00000 00000 011111 1111100
Q ss_pred CCCCCCCCCCCCCCCCCCCeEEEEeCCCCCCCCcEEEeCCchHHHHHHHhhhhcCCCCCCEEEEecccchhchhHH-HHH
Q 007715 339 VDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFS 417 (592)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~-~~~ 417 (592)
.. .........++++|||+|||||||+||||+++|+++++.+.+....++++++|++++.+|++|+.+++. ++.
T Consensus 155 ~~-----~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~ 229 (590)
T 3kxw_A 155 RS-----SSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMGLIGCILT 229 (590)
T ss_dssp GG-----GGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHTTTHH
T ss_pred cc-----ccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEecCCCcchhhHHHHHH
Confidence 00 011223456799999999999999999999999999999988888899999999999999999999866 889
Q ss_pred HHHcCCEEEEeCCCC---ChhhHHHHHHHhCCcEEEccHHHHHHHHhc---CcCCCCCCccccEEEEecCCCChhhHHHH
Q 007715 418 SFLNGATLALYQGSP---LERSFGKFVQDAGVTVLGTVPSLVKAWRNT---NCLEGLDWTKIRSFASTGETSNVDDDLWL 491 (592)
Q Consensus 418 ~L~~G~~lvl~~~~~---~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~---~~~~~~~l~sLr~v~~gGe~l~~~~~~~~ 491 (592)
+++.|+++++.+... ++..+++.|+++++|++.++|+++..+.+. ......++++||.+++|||++++++.+++
T Consensus 230 ~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~ 309 (590)
T 3kxw_A 230 PIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETMEHF 309 (590)
T ss_dssp HHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSSCCCHHHHHHH
T ss_pred HHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCCCCCHHHHHHH
Confidence 999999999986321 678999999999999999999999998875 22345678999999999999999999998
Q ss_pred HHhcc-----CCceeccccchhcccccccCCcC--------------------------CCCccCcccccCCCceEEEEC
Q 007715 492 SSKAW-----YNAIIESCGGTELSSAYIQGSLL--------------------------QPQAFGAFSTATMTAGLVILD 540 (592)
Q Consensus 492 ~~~~~-----~~~l~n~YG~TE~~~~~~~~~~~--------------------------~~~~~~~iG~p~~~~~v~IlD 540 (592)
.+.++ +.+++|.||+||+++.++..... .....+++|+|+++ ++|+|
T Consensus 310 ~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d 387 (590)
T 3kxw_A 310 YQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIID 387 (590)
T ss_dssp HHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEEC
T ss_pred HHHHHHcCCCccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEc
Confidence 88764 34799999999998755432210 11234689999998 89999
Q ss_pred CC-CCCCCCCCCcceeEEE-----ecccCCCchhhcc
Q 007715 541 EC-GVPYPDDQPCVGEVGL-----FPLYLGASDRLLN 571 (592)
Q Consensus 541 ~~-g~~vp~G~~giGel~v-----~~gY~~~~~~~~~ 571 (592)
++ ++++|+|++ |||+| ++||+|+|+.+..
T Consensus 388 ~~~~~~~~~g~~--GEl~v~g~~v~~GY~~~p~~t~~ 422 (590)
T 3kxw_A 388 PDTLIPCDFDQV--GEIWVQSNSVAKGYWNQPEETRH 422 (590)
T ss_dssp TTTCCBCCTTBC--EEEEEESTTSCCCBTTCHHHHHH
T ss_pred CCCCcCCCCCCE--EEEEEeCCcccccccCChhHHHH
Confidence 76 999999995 99999 8999999998743
No 28
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=2.1e-52 Score=452.20 Aligned_cols=344 Identities=19% Similarity=0.176 Sum_probs=271.5
Q ss_pred CCCCCC-ceEEEEeccCCCCCCceEecHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecC
Q 007715 186 RRKEDN-TVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (592)
Q Consensus 186 a~~~pd-~~Al~~~~~~~~~~~~~~lTy~eL~~~a~~lA~~L~~~v~~gd~V~i~~~~~~e~v~a~lA~~k~Ga~~vpld 264 (592)
++++|+ ++|+++.++ ++||+||+++++++|++|. .|++|+|+++|++++++++|||+|+|+++||||
T Consensus 32 a~~~p~d~~Al~~~~~--------~~Ty~eL~~~~~~~A~~L~----~~~~V~i~~~~~~~~~~~~la~~~~Ga~~vpl~ 99 (505)
T 3nyq_A 32 PTGAPADRPALRFGER--------SLTYAELAAAAGATAGRIG----GAGRVAVWATPAMETGVAVVAALLAGVAAVPLN 99 (505)
T ss_dssp CCSGGGGSEEEEETTE--------EEEHHHHHHHHHHHHTTCC-------CEEEECCSSHHHHHHHHHHHHHTCCEEEEC
T ss_pred HHhCCCCCeEEEECCe--------eeeHHHHHHHHHHHHhhcc----CCCEEEEEcCCCHHHHHHHHHHHHhCCEEEEcC
Confidence 467776 999999877 9999999999999998774 489999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEEecceeccCccccchhhHhhcCCCcEEEEcCCCCCCCCCCccCcccHHHhhccCCCCCC
Q 007715 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 344 (592)
Q Consensus 265 ~~~~~~~l~~~l~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (592)
|.+|.+++.++++++++++||++.... .. .. .. ....+.+.. ..
T Consensus 100 ~~~~~~~l~~il~~~~~~~vi~~~~~~-----~~--~~-~~--~~~~~~~~~---------------------~~----- 143 (505)
T 3nyq_A 100 PKSGDKELAHILSDSAPSLVLAPPDAE-----LP--PA-LG--ALERVDVDV---------------------RA----- 143 (505)
T ss_dssp TTCCHHHHHHHHHHHCCSEEEECTTCC-----CC--GG-GT--TSEEEECCT---------------------TC-----
T ss_pred CCCCHHHHHHHHHHCCCCEEEECCccc-----cc--hh-hc--ccccccccc---------------------cc-----
Confidence 999999999999999999999987521 00 00 00 000111100 00
Q ss_pred CCCCCCCCCCCCCeEEEEeCCCCCCCCcEEEeCCchHHHHHHHhhhhcCCCCCCEEEEecccchhchh-HHHHHHHHcCC
Q 007715 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGA 423 (592)
Q Consensus 345 ~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~L~~G~ 423 (592)
....+.....++++|||+|||||||+||||+++|+++.+.+.+....++++++|++++..|++|..+. +.++.+|+.|+
T Consensus 144 ~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~ 223 (505)
T 3nyq_A 144 RGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGG 223 (505)
T ss_dssp CCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHTTTTHHHHHHTC
T ss_pred ccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHHHHHHHHHhcCC
Confidence 00111233467899999999999999999999999999999888888899999999999999998876 56899999999
Q ss_pred EEEEeCCCCChhhHHHHHHHhCCcEEEccHHHHHHHHhcCcC---CCCCCccccEEEEecCCCChhhHHHHHHhccCCce
Q 007715 424 TLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL---EGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAI 500 (592)
Q Consensus 424 ~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~---~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~~~~l 500 (592)
++++.+ .+++..+++.+ ++++|+++++|+++..|.+.... ....++++|.+++|||++++++.+++...+ ++++
T Consensus 224 ~~~~~~-~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~-~~~~ 300 (505)
T 3nyq_A 224 SVRHLG-RFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAAAT-GRRV 300 (505)
T ss_dssp EEEECS-SCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEECSSCCCHHHHHHHHHHH-SCCC
T ss_pred EEEECC-CCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCchhhcccccceEEEECCCCCCHHHHHHHHHhc-CCee
Confidence 999986 57888899988 89999999999999999874221 123467899999999999999999888775 4799
Q ss_pred eccccchhcccccccCCcCCCCccCcccccCCCceEEEECCCCCCCCC---CCCcceeEEE-----ecccCCCchhhccc
Q 007715 501 IESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPD---DQPCVGEVGL-----FPLYLGASDRLLNA 572 (592)
Q Consensus 501 ~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~v~IlD~~g~~vp~---G~~giGel~v-----~~gY~~~~~~~~~~ 572 (592)
+|.||+||+++.++. ........+++|+|++|++++|+|++|++++. |+ +|||+| ++||+|+|+.+...
T Consensus 301 ~~~YG~TE~~~~~~~-~~~~~~~~~~vG~p~~~~~~~i~d~~g~~~~~~~~g~--~GEl~v~g~~v~~GY~~~~~~t~~~ 377 (505)
T 3nyq_A 301 IERYGMTETLMNTSV-RADGEPRAGTVGVPLPGVELRLVEEDGTPIAALDGES--VGEIQVRGPNLFTEYLNRPDATAAA 377 (505)
T ss_dssp EEEEEETTTEEEEEC-CTTSCCCTTCCCEECTTCEEEEC-----CCCCCCSCC--CEEEEEESTTSCCEETTCHHHHHHT
T ss_pred ecccchhhccccccc-CCCCCCCCCCcccCCCCCEEEEECCCCCCcccCCCCc--eEEEEEecCchhhhhCCChhHhhhh
Confidence 999999999865433 33334556899999999999999999999987 77 599999 89999999988555
Q ss_pred ccccccc-ccCc
Q 007715 573 DHEEVYF-RGMP 583 (592)
Q Consensus 573 ~~~~~~f-~~~~ 583 (592)
...+.|| +||-
T Consensus 378 f~~~g~y~TGDl 389 (505)
T 3nyq_A 378 FTEDGFFRTGDM 389 (505)
T ss_dssp BCTTSCEEEEEE
T ss_pred hcCCCCCccCCe
Confidence 5434444 4443
No 29
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=5.4e-52 Score=455.48 Aligned_cols=350 Identities=20% Similarity=0.184 Sum_probs=273.6
Q ss_pred CCCCCCceEEEEecc--CCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEe
Q 007715 186 RRKEDNTVAIVWRED--RCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVS 262 (592)
Q Consensus 186 a~~~pd~~Al~~~~~--~~~~~~~~~lTy~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~v~a~lA~~k~Ga~~vp 262 (592)
|+++||++|+++.+. +......+++||+||+++++++|++|++. + +||+|+|+++|++++++++|||+|+|+++||
T Consensus 30 a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~~~~lA~~~~Gav~vp 108 (562)
T 3ite_A 30 AKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAFAIIVGIMKSGNTYVP 108 (562)
T ss_dssp HHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHHHHHHHHHHHTTCEEEE
T ss_pred HHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHHHHHHHHHHHhCCEEEe
Confidence 478999999998652 11112335899999999999999999999 9 7999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCeeEEEEecceeccCccccchhhHhhcCCCcEEEEcCCCCCCCCCCccCcccHHHhhccCCCC
Q 007715 263 IADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (592)
Q Consensus 263 ld~~~~~~~l~~~l~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (592)
+|+.++.+++.+++++++++++|+++...... .......++.. ....+.+.......
T Consensus 109 l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~-----------~~~~~~~~~~~-----------~~~~~~~~~~~~~~- 165 (562)
T 3ite_A 109 IEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGV-----------ELPPETKVLDT-----------KNQSFIENLSTQDT- 165 (562)
T ss_dssp CCTTSCHHHHHHHHHHHTCSEEEECTTTTTTC-----------CCCTTCEEEET-----------TCHHHHHHHHHSCC-
T ss_pred cCCcCHHHHHHHHHHhcCCCEEEEcccccccc-----------ccCccceeecc-----------cchhhhhhcccccc-
Confidence 99999999999999999999999987532110 00111111111 11122232222211
Q ss_pred CCCCCCCCCCCCCCCeEEEEeCCCCCCCCcEEEeCCchHHHHHHHhhh--------hcCCCCCCEEEEecccchhchhHH
Q 007715 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA--------HIDLKVGDVYCWPTNLGWVMGPVI 414 (592)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~--------~~~~~~~d~~l~~~~~~~~~~~~~ 414 (592)
........++++|||+|||||||+||||+++|+++.+...+... .+.+...+++++..+++|+.+++.
T Consensus 166 ----~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (562)
T 3ite_A 166 ----SDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGE 241 (562)
T ss_dssp ----SCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHH
T ss_pred ----cccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHH
Confidence 11122345688999999999999999999999999876654432 245788899999999999999999
Q ss_pred HHHHHHcCCEEEEeCCCCChhhHHHHHHHhCCcEEEccHHHHHHHHhcCcCCCCCCccccEEEEecCCCChhhHHHHHHh
Q 007715 415 LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSK 494 (592)
Q Consensus 415 ~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~ 494 (592)
++.++..|+++++.+....+..+.+.|+++++|++.++|++++.+... ..++++||.+++|||++++++.+++...
T Consensus 242 ~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~----~~~~~~lr~~~~gG~~l~~~~~~~~~~~ 317 (562)
T 3ite_A 242 MFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV----PEDAPHLVYLGVGGEKMTPRTQQIWSSS 317 (562)
T ss_dssp HHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC----GGGSTTCCEEEEESSCCCHHHHHHHTTC
T ss_pred HHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC----ccccCceEEEEEecCCCCHHHHHHHhhC
Confidence 999999999999876333456788999999999999999999887433 3457899999999999999999888765
Q ss_pred ccCCceeccccchhcccccccCCcCCCCccCcccccCCCceEEEEC-CCCCCCCCCCCcceeEEE-----ecccCCCchh
Q 007715 495 AWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-----FPLYLGASDR 568 (592)
Q Consensus 495 ~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~v~IlD-~~g~~vp~G~~giGel~v-----~~gY~~~~~~ 568 (592)
+ +++++|.||+||+++.++...........++|+|++|++++|+| +.++++|+|++ |||+| ++||+|+|+.
T Consensus 318 ~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~--GEl~v~g~~v~~GY~~~p~~ 394 (562)
T 3ite_A 318 D-RVALVNVYGPTEVTIGCSAGRILPDSDTRCIGHPLGDSVAHVLAPGSNEHVKKGMA--GELVIEGSLVANGYLNRPDA 394 (562)
T ss_dssp S-SCEEEEEECCGGGCSCSEEEECCTTSCTTEEEEECTTCEEEEECTTSSCBCCTTSC--EEEEEESTTSCCEESSCTTC
T ss_pred C-CcEEEEeeccchheeeeeeeeecCCCCCccccccCCCCeEEEEeCCCCCCCCCCCc--eEEEEeccccchhhCCCccc
Confidence 4 58999999999998655544433445567899999999999999 46889999995 99999 7899999997
Q ss_pred hc
Q 007715 569 LL 570 (592)
Q Consensus 569 ~~ 570 (592)
+.
T Consensus 395 t~ 396 (562)
T 3ite_A 395 KG 396 (562)
T ss_dssp CS
T ss_pred cc
Confidence 63
No 30
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=1.4e-51 Score=445.98 Aligned_cols=367 Identities=16% Similarity=0.169 Sum_probs=278.1
Q ss_pred cCCCCCCceEEEEeccCCCCCCceEecHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecC
Q 007715 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (592)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTy~eL~~~a~~lA~~L~~~v~~gd~V~i~~~~~~e~v~a~lA~~k~Ga~~vpld 264 (592)
+++++||++|+++.++ ++||+||+++++++|++|++. +||+|+|+++|++++++++|||+++|+++||++
T Consensus 10 ~a~~~pd~~Al~~~~~--------~~Ty~eL~~~~~~lA~~L~~~--~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~ 79 (501)
T 3ipl_A 10 QAQQNGHHIAITDGQE--------SYTYQNLYCEASLLAKRLKAY--QQSRVGLYIDNSIQSIILIHACWLANIEIAMIN 79 (501)
T ss_dssp HHHHHTTSEEEECSSC--------EEEHHHHHHHHHHHHHHHHTT--CCSEEEEECCSSHHHHHHHHHHHHTTCEEEECC
T ss_pred HHHhcCCceEEEeCCc--------EEEHHHHHHHHHHHHHHHHHc--CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEecC
Confidence 3478999999998876 999999999999999999986 999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEEecceeccCccccchhhHhhcCCCcEEEEcCCCCCCCCCCccCcccHHHhhccCCCCCC
Q 007715 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 344 (592)
Q Consensus 265 ~~~~~~~l~~~l~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (592)
+.++.+++.++++++++++||++...............+ .........................+.......
T Consensus 80 ~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 151 (501)
T 3ipl_A 80 TRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDI----EFAGRDITTNGLLDNTMGIQYDTSNETVVPKES---- 151 (501)
T ss_dssp TTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEETTC------------------------------------CC----
T ss_pred ccCCHHHHHHHHHhcCCCEEEEccccccccccccccccc----eeeeeecccccccccccccccccchhhccccCC----
Confidence 999999999999999999999998653221111000000 000000000000000000000000001100000
Q ss_pred CCCCCCCCCCCCCeEEEEeCCCCCCCCcEEEeCCchHHHHHHHhhhhcCCCCCCEEEEecccchhchhHHHHHHHHcCCE
Q 007715 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGAT 424 (592)
Q Consensus 345 ~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~ 424 (592)
..........++++|||+|||||||.||||+++|+++.+.+.+....++++++|++++..|++|+.++..++.+++.|++
T Consensus 152 ~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~ 231 (501)
T 3ipl_A 152 PSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFT 231 (501)
T ss_dssp HHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCE
T ss_pred cccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCce
Confidence 00011224567999999999999999999999999999988888888999999999999999999999888999999999
Q ss_pred EEEeCCCCChhhHHHHHHHhCCcEEEccHHHHHHHHhcCcCCCCCCccccEEEEecCCCChhhHHHHHHhccCCceeccc
Q 007715 425 LALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESC 504 (592)
Q Consensus 425 lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~Y 504 (592)
+++.+ .+++..+++.|+++++|++.++|+++..|.+...... .+||.+++|||++++++.+++.+. +++++|.|
T Consensus 232 ~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---~~lr~i~~gG~~l~~~~~~~~~~~--~~~~~~~Y 305 (501)
T 3ipl_A 232 VRIVD-KFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEP---YNLQKILLGGAKLSATMIETALQY--NLPIYNSF 305 (501)
T ss_dssp EEECS-SCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSC---TTCCEEEECSSCCCHHHHHHHHHT--TCCEEEEE
T ss_pred EEeCC-CCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCc---CcccEEEEeCCCCCHHHHHHHHHh--CCCEeccc
Confidence 99987 5789999999999999999999999999998754332 389999999999999999888763 58899999
Q ss_pred cchhcccccccCCcC-CCCccCcccccCCCceEEEECCCCCCCCCCCCcceeEEE-----ecccCCCchhhccccccccc
Q 007715 505 GGTELSSAYIQGSLL-QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVY 578 (592)
Q Consensus 505 G~TE~~~~~~~~~~~-~~~~~~~iG~p~~~~~v~IlD~~g~~vp~G~~giGel~v-----~~gY~~~~~~~~~~~~~~~~ 578 (592)
|+||+++.++..... ......++|+|++|++++|+|++ +|+ +|||+| ++||+++|+.+.. +.+.|
T Consensus 306 G~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~--~GEl~v~g~~~~~gY~~~~~~t~~--~~~g~ 376 (501)
T 3ipl_A 306 GMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPN-----KEG--HGELMIKGANVMNGYLYPTDLTGT--FENGY 376 (501)
T ss_dssp EEGGGTEEEEEECHHHHHHCTTCCBEECTTCEEEEESCC-----SSC--CEEEEEESTTSCSCCSBSTTCCCS--EETTE
T ss_pred cccccccceeecCccccccCCCCCCCCCCCcEEEEecCC-----CCC--ccEEEEeccchhhhhCcChhhcch--hcCCc
Confidence 999998644433221 12356789999999999999976 455 499999 8999999997733 33344
Q ss_pred c-ccCcC
Q 007715 579 F-RGMPM 584 (592)
Q Consensus 579 f-~~~~~ 584 (592)
| +||-+
T Consensus 377 ~~TGDl~ 383 (501)
T 3ipl_A 377 FNTGDIA 383 (501)
T ss_dssp EEEEEEE
T ss_pred eecCCEE
Confidence 4 44433
No 31
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=1.4e-50 Score=445.80 Aligned_cols=364 Identities=17% Similarity=0.131 Sum_probs=283.5
Q ss_pred CCCCCCceEEEEeccCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecC
Q 007715 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (592)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTy~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~v~a~lA~~k~Ga~~vpld 264 (592)
++.+|+.+++.... +..+++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+++|+++||++
T Consensus 31 a~~~p~~~~~~~~~-----~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~ 105 (576)
T 3gqw_A 31 ALSSAGMNFYDRRC-----QLEDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEFVEAFFACQYAGLVAVPLA 105 (576)
T ss_dssp TTSSCEEEEECTTS-----CEEEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEEC
T ss_pred hhCCCCeEEeCCCC-----CceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCeEeecC
Confidence 47889888875322 1234899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCC-------HHHHHHHHHhcCeeEEEEecceeccCccccchhhHhhcCCCcEEEEcCCCCCCCCCCccCcccHHHhhc
Q 007715 265 DSFA-------AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLS 337 (592)
Q Consensus 265 ~~~~-------~~~l~~~l~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 337 (592)
+.++ .+++.++++++++++||++++.. +.........+....+. ..+.+..
T Consensus 106 ~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~------~~~~~~~~~~~~~~~~~---------------~~~~~~~- 163 (576)
T 3gqw_A 106 IPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWL------PLVNAATHDNPELHVLS---------------HAWFKAL- 163 (576)
T ss_dssp CCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGH------HHHHHHGGGCTTCEEEE---------------HHHHHTS-
T ss_pred CCCcccchhhHHHHHHHHHHhcCCCEEEecHHHH------HHHHHhhccCCcceecc---------------hhhhhcc-
Confidence 9999 89999999999999999987532 12222222221111110 0011111
Q ss_pred cCCCCCCCCCCCCCCCCCCCeEEEEeCCCCCCCCcEEEeCCchHHHHHHHhhhh-cCCCCCCEEEEecccchhchhHH-H
Q 007715 338 SVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH-IDLKVGDVYCWPTNLGWVMGPVI-L 415 (592)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~-~~~~~~d~~l~~~~~~~~~~~~~-~ 415 (592)
.. .........+++++||+|||||||.||||+++|+++++.+.+.... ++++++|++++.+|++|+.+++. +
T Consensus 164 --~~----~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~ 237 (576)
T 3gqw_A 164 --PE----ADVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHDGIKLRPGDRCVSWLPFYHDMGLVGFL 237 (576)
T ss_dssp --CC----CCCCCCCCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHTTSCCCTTCCEEECCCTTSHHHHHHHT
T ss_pred --cc----cccccCCCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhcccCCCCcceEEEcCCccccccHHHHH
Confidence 11 0111223457999999999999999999999999998887766544 78999999999999999999865 6
Q ss_pred HHHHHcCCEEEEeCC---CCChhhHHHHHHHhCCcEEEccHHHHHHHHhcCc---CCCCCCccccEEEEecCCCChhhHH
Q 007715 416 FSSFLNGATLALYQG---SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC---LEGLDWTKIRSFASTGETSNVDDDL 489 (592)
Q Consensus 416 ~~~L~~G~~lvl~~~---~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~---~~~~~l~sLr~v~~gGe~l~~~~~~ 489 (592)
+.++..|+++++.+. ..++..+++.|+++++|++.++|+++..+.+... ....++++||.+++|||++++++.+
T Consensus 238 ~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~ 317 (576)
T 3gqw_A 238 LTPVATQLSVDYLRTQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEKDLAELDLSCWRVAGIGAEPISAEQLH 317 (576)
T ss_dssp HHHHHTTCCEEECCHHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCCHHHHTTCCCTTCCEEEECSSCCCHHHHH
T ss_pred HHHHhcCceEEEcchhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhcccccccCChhhhHhhhccCccCCHHHHH
Confidence 678899999988763 1477899999999999999999999988865432 2455689999999999999999999
Q ss_pred HHHHhcc-----CCceeccccchhcccccccCCcCCC---------------------------CccCcccccCCCceEE
Q 007715 490 WLSSKAW-----YNAIIESCGGTELSSAYIQGSLLQP---------------------------QAFGAFSTATMTAGLV 537 (592)
Q Consensus 490 ~~~~~~~-----~~~l~n~YG~TE~~~~~~~~~~~~~---------------------------~~~~~iG~p~~~~~v~ 537 (592)
++.+.++ +.+++|.||+||+++.++....... ....++|+|++|++++
T Consensus 318 ~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~ 397 (576)
T 3gqw_A 318 QFAECFRQVNFDNKTFMPCYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHGIE 397 (576)
T ss_dssp HHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEEEEEBCCEECTTCEEE
T ss_pred HHHHHHhhcCCCcccccccCCcccccceeecccccCCccccccchhhhcccCcccccCccccCccceeecCCcCCCCeEE
Confidence 9888764 5789999999999875543321100 1123899999999999
Q ss_pred EECCCCCCCCCCCCcceeEEE-----ecccCCCchhhccccccccccccCcC
Q 007715 538 ILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVYFRGMPM 584 (592)
Q Consensus 538 IlD~~g~~vp~G~~giGel~v-----~~gY~~~~~~~~~~~~~~~~f~~~~~ 584 (592)
|+|++|+++|+|++ |||+| ++||+|+|+.+......+||.+||-+
T Consensus 398 i~d~~g~~~~~g~~--GEl~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGDl~ 447 (576)
T 3gqw_A 398 IRNEAGMPVAERVV--GHICISGPSLMSGYFGDQVSQDEIAATGWLDTGDLG 447 (576)
T ss_dssp EECTTSCBCCTTBC--EEEEEESTTSCCCBTTCHHHHHHHHHHSCEEEEEEE
T ss_pred EECCCCCCCCCCCe--EEEEEeCccccccccCCccccccccCCCeeeccceE
Confidence 99999999999994 99999 79999999876433233444455444
No 32
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.97 E-value=1.5e-31 Score=277.27 Aligned_cols=196 Identities=13% Similarity=0.043 Sum_probs=162.0
Q ss_pred CCCCCeEEEEeCCCCCCCCcEEEeCCchHHHHHHHh---hhhcCCCCCCEEEEeccc-chhchhHHHHHHHHcCCEEEEe
Q 007715 353 NPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG---WAHIDLKVGDVYCWPTNL-GWVMGPVILFSSFLNGATLALY 428 (592)
Q Consensus 353 ~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~---~~~~~~~~~d~~l~~~~~-~~~~~~~~~~~~L~~G~~lvl~ 428 (592)
.+++++++|+|||||||+||||+++|+++.+...+. ...++++++|++++..|+ .|+.+....+.++..|+ +++.
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~-~v~~ 166 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGG-MFFS 166 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTS-CEEC
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCC-EEEC
Confidence 467899999999999999999999999998877743 355678899999999999 88888877788899999 5554
Q ss_pred CCCCChh-----------------------hHHHHHHHhCCcEEEccHHHHHHHHhcCcCCCCCCccccEEEEecCCCCh
Q 007715 429 QGSPLER-----------------------SFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNV 485 (592)
Q Consensus 429 ~~~~~~~-----------------------~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~ 485 (592)
. .+++. .+++.|+++++|++.++|+++..|++.......++++||.+++|||++++
T Consensus 167 ~-~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~ 245 (369)
T 3hgu_A 167 I-DIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTELNL 245 (369)
T ss_dssp C-CCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHHHHHCSEEEEESSCCCH
T ss_pred c-cCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccccCCeeEEEECCccCCH
Confidence 3 45555 77779999999999999999999987643223456899999999999999
Q ss_pred hhHHHHH-HhccCCceeccccchhcccccccCCcCCCCccCccccc------CCCceEEEECC-CCCCCCCCCCcceeEE
Q 007715 486 DDDLWLS-SKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTA------TMTAGLVILDE-CGVPYPDDQPCVGEVG 557 (592)
Q Consensus 486 ~~~~~~~-~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p------~~~~~v~IlD~-~g~~vp~G~~giGel~ 557 (592)
++.+++. +.+++++++|.||+||+++++..+ + ..++|+| +++++++|+|+ +|++||+|+ +|||+
T Consensus 246 ~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~----~--~~~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~--~GEl~ 317 (369)
T 3hgu_A 246 DEIKFIASEILPDCEFSASYGSTSALGVSRSL----L--ITSESQQVIYDSFSPFITYDVVDSITAQTVEYGE--RGNVI 317 (369)
T ss_dssp HHHHHHHHHTCTTSEEEEEEEEGGGTEEEEEC----C--BCTTCSSCEEECCTTTEEEEEECTTTCSBCCTTC--EEEEE
T ss_pred HHHHHHHHHhCCCcEEEcccCchhhhcceecc----c--cccCCCcccccCCCCCeEEEEECCCCCcCCCCCC--ceEEE
Confidence 9999999 888779999999999988643211 1 1158999 99999999997 999999999 49999
Q ss_pred E
Q 007715 558 L 558 (592)
Q Consensus 558 v 558 (592)
|
T Consensus 318 v 318 (369)
T 3hgu_A 318 V 318 (369)
T ss_dssp E
T ss_pred E
Confidence 9
No 33
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=99.97 E-value=2.5e-30 Score=266.45 Aligned_cols=186 Identities=17% Similarity=0.099 Sum_probs=159.2
Q ss_pred CCCeEEEEeCCCCCCCCcEEEeCCchHHHHHHHhhhhcCCCCCCEEEEecccchhchhHHHHHHHHcCCEEEEeCCCCCh
Q 007715 355 VDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLE 434 (592)
Q Consensus 355 ~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lvl~~~~~~~ 434 (592)
.|++|||+|||||||+||||+++|+++++.+.+....++++++|++++.+|++|+++++.++.+++.|+++++.+...+
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~~~- 114 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPTAN- 114 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCCSC-
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCcccc-
Confidence 3789999999999999999999999999999888889999999999999999999999989999999999999875433
Q ss_pred hhHHHHHHHhCCcEEEccHHHHHHHHhcCcCCCCCCccccEEEEecCCCChhhHHHHHHhccCCceeccccchhcccccc
Q 007715 435 RSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYI 514 (592)
Q Consensus 435 ~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~ 514 (592)
+++.|+++++|++.++|+++..|++... ...++++||.+++|||++++++.+++.+. +++++|.||+||++..+.
T Consensus 115 --~~~~i~~~~~t~~~~~P~~l~~ll~~~~-~~~~l~~lr~v~~gG~~l~~~~~~~~~~~--~~~~~~~YG~TEt~~~~~ 189 (358)
T 4gs5_A 115 --PLAGLDHADFDFVAMVPMQLQSILENSA-TSGQVDRLGKVLLGGAPVNHALAMQISDL--AMPVYQSYGMTETVSHVA 189 (358)
T ss_dssp --TTTTCSSCCCSEEEECHHHHHHHHHCTT-TGGGGGGGCSEEECSSCCCHHHHHHHHTC--SSCEEEEEECGGGSSEEE
T ss_pred --HHHHHHHhCCeEEEcChHHHHHhhcccc-ccccCCcceEEEEcccCCCchheeccccc--CceEEeccccccccceee
Confidence 3567889999999999999999988654 34468999999999999999999988764 588999999999986544
Q ss_pred cCCcCCCCccCcccccCCCceEEEECCCCCCCCCCCCcceeEEEe
Q 007715 515 QGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF 559 (592)
Q Consensus 515 ~~~~~~~~~~~~iG~p~~~~~v~IlD~~g~~vp~G~~giGel~v~ 559 (592)
. ........+++|.|.||+++.+.+ .||+++.
T Consensus 190 ~-~~~~~~~~g~~~~~~pgv~~~~~~------------~Gel~~~ 221 (358)
T 4gs5_A 190 L-KALNGPEASELYVFLPGIQYGVDE------------RGCLHIS 221 (358)
T ss_dssp E-EECSSTTCCSCEEECTTCEEEECT------------TSEEEEE
T ss_pred c-ccccccccceeeccCCCeEEEecC------------cCceEEe
Confidence 3 333344568899999999888732 2888884
No 34
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=99.96 E-value=1.6e-29 Score=268.66 Aligned_cols=201 Identities=15% Similarity=0.091 Sum_probs=161.5
Q ss_pred CCCCCCeEEEEeCCCCCCCCcEEEeCCchHHHHHHHhh---hhcCCCCCCEEEEecccc-hhchhHHHHHHHHcCCEEEE
Q 007715 352 YNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW---AHIDLKVGDVYCWPTNLG-WVMGPVILFSSFLNGATLAL 427 (592)
Q Consensus 352 ~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~---~~~~~~~~d~~l~~~~~~-~~~~~~~~~~~L~~G~~lvl 427 (592)
...++++++|+|||||||+||||+++|+++.+...+.. ..++++++|++++..+++ |..++..++.++..|+++++
T Consensus 88 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~ 167 (443)
T 2y4o_A 88 AVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVP 167 (443)
T ss_dssp SSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEEC
T ss_pred CCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEE
Confidence 34568999999999999999999999999876544332 357889999999999985 56666678899999999988
Q ss_pred eCCCCChhhHHHHHHHhCCcEEEccHHHHHHHHhcCcCCCC--CCccccEEEEecCCCChhhHHHHHHhccCCceecccc
Q 007715 428 YQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGL--DWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCG 505 (592)
Q Consensus 428 ~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~--~l~sLr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG 505 (592)
.+ ..++..+++.|+++++|++.++|+++..|++....... .+++||.+++|||++++++.+++.+.+ +++++|.||
T Consensus 168 ~~-~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG 245 (443)
T 2y4o_A 168 MS-GGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRV-GIDALDIYG 245 (443)
T ss_dssp CC-SCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHH-TCEEEEEEE
T ss_pred CC-CCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHh-CcCEEeccC
Confidence 76 35889999999999999999999999999875322222 257999999999999999999998777 488999999
Q ss_pred chhcccc-cccCCcCCCCccCcccccCCCceEEEEC-CCCCCCCCCCCcceeEEEe
Q 007715 506 GTELSSA-YIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGLF 559 (592)
Q Consensus 506 ~TE~~~~-~~~~~~~~~~~~~~iG~p~~~~~v~IlD-~~g~~vp~G~~giGel~v~ 559 (592)
+||+++. +...... .....+.|.+++.++|+| ++|+++|+|+. |||+|.
T Consensus 246 ~TE~~g~~~~~~~~~---~~~g~~~~~~~~~~~i~d~~~g~~~~~G~~--Gel~v~ 296 (443)
T 2y4o_A 246 LSEVMGPGVACECVE---TKDGPVIWEDHFYPEIIDPVTGEVLPDGSQ--GELVFT 296 (443)
T ss_dssp ETTTTEEEEEEECTT---TCCSEEECTTTEEEEEECTTTCCBCCTTCC--EEEEEE
T ss_pred chhhcCCeEEeccCC---CCCceEEccCCeEEEEEcCCCCCCCCCCCc--eEEEEe
Confidence 9998532 2221111 111255677899999999 56999999995 999994
No 35
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=99.96 E-value=1.9e-29 Score=267.46 Aligned_cols=201 Identities=20% Similarity=0.169 Sum_probs=164.2
Q ss_pred CCCC-CCeEEEEeCCCCCCCCcEEEeCCchHHHHHHHh---hhhcCCCCCCEEEEecccchhch-hHHHHHHHHcCCEEE
Q 007715 352 YNPV-DAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG---WAHIDLKVGDVYCWPTNLGWVMG-PVILFSSFLNGATLA 426 (592)
Q Consensus 352 ~~~~-~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~---~~~~~~~~~d~~l~~~~~~~~~~-~~~~~~~L~~G~~lv 426 (592)
..++ ++++||+|||||||.||||+++|+++.+...+. ...++++++|++++..+++|..+ +..++.++..|++++
T Consensus 81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~ 160 (436)
T 3qov_A 81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTV 160 (436)
T ss_dssp CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEE
T ss_pred cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEE
Confidence 3455 899999999999999999999999987665544 33458899999999999875544 456788999999999
Q ss_pred EeCCCCChhhHHHHHHHhCCcEEEccHHHHHHHHhcCcCCCC--CCccccEEEEecCCCChhhHHHHHHhccCCceeccc
Q 007715 427 LYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGL--DWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESC 504 (592)
Q Consensus 427 l~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~--~l~sLr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~Y 504 (592)
+.+ ..++..+++.|+++++|++.++|+++..|++....... .+++||.+++|||++++++.+++.+.+ +++++|.|
T Consensus 161 ~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~Y 238 (436)
T 3qov_A 161 PAA-AGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERML-NVKAYNSF 238 (436)
T ss_dssp CCC-SCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEEEE
T ss_pred eCC-CCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHh-CccEEecC
Confidence 876 45789999999999999999999999999876432222 378999999999999999999998877 48999999
Q ss_pred cchhcccccccCCcCCCCccCcccccCCCceEEEEC-CCCCCCCCCCCcceeEEEe
Q 007715 505 GGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGLF 559 (592)
Q Consensus 505 G~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~v~IlD-~~g~~vp~G~~giGel~v~ 559 (592)
|+||+++.++.... .....+|.|.+++.++|+| ++|+++|+|+. |||+|.
T Consensus 239 G~TE~~~~~~~~~~---~~~~g~~~~~~~~~v~i~d~~~g~~~~~g~~--Gel~v~ 289 (436)
T 3qov_A 239 GMTEMNGPGVAFEC---QEQNGMHFWEDCYLVEIIDPETGEPVPEGEI--GELVLT 289 (436)
T ss_dssp EEGGGTEEEEEEEC---TTCSSEEECTTTEEEEEECTTTCSBCSTTCC--EEEEEE
T ss_pred cchhhcCCeeEEec---CCCCeeEEccCceEEEEEECCCCCCCCCCCc--eEEEEe
Confidence 99999643222211 1123367788899999999 88999999995 999993
No 36
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=99.96 E-value=1.6e-28 Score=260.50 Aligned_cols=201 Identities=17% Similarity=0.111 Sum_probs=161.8
Q ss_pred CCCCCCeEEEEeCCCCCCCCcEEEeCCchHHHHHHHhh---hhcCCCCCCEEEEeccc-chhchhHHHHHHHHcCCEEEE
Q 007715 352 YNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW---AHIDLKVGDVYCWPTNL-GWVMGPVILFSSFLNGATLAL 427 (592)
Q Consensus 352 ~~~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~~~~---~~~~~~~~d~~l~~~~~-~~~~~~~~~~~~L~~G~~lvl 427 (592)
...++++++|+|||||||+||||+++|+++.+...+.. ..++++++|++++..|+ .|..++..++.++..|+++++
T Consensus 86 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 165 (437)
T 2y27_A 86 AVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIP 165 (437)
T ss_dssp SSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEEC
T ss_pred cCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEe
Confidence 34568999999999999999999999999876554332 35788999999999998 566666678899999999998
Q ss_pred eCCCCChhhHHHHHHHhCCcEEEccHHHHHHHHhcCcCCCC--CCccccEEEEecCCCChhhHHHHHHhccCCceecccc
Q 007715 428 YQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGL--DWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCG 505 (592)
Q Consensus 428 ~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~--~l~sLr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG 505 (592)
.+ ..++..+++.|+++++|++.++|+++..|++....... .+++||.+++|||++++++.+++.+.+ +++++|.||
T Consensus 166 ~~-~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG 243 (437)
T 2y27_A 166 FG-GGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRM-GIDAVDIYG 243 (437)
T ss_dssp CC-SCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEEEEE
T ss_pred CC-CCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHH-CcCEEecCC
Confidence 76 45889999999999999999999999999875322222 247999999999999999999988776 488999999
Q ss_pred chhcccc-cccCCcCCCCccCcccccCCCceEEEEC-CCCCCCCCCCCcceeEEEe
Q 007715 506 GTELSSA-YIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGLF 559 (592)
Q Consensus 506 ~TE~~~~-~~~~~~~~~~~~~~iG~p~~~~~v~IlD-~~g~~vp~G~~giGel~v~ 559 (592)
+||+++. +...... ....++.|.+++.++|+| ++|+++|+|+. |||+|.
T Consensus 244 ~TE~~g~~~~~~~~~---~~~g~~~~~~~~~~~i~d~~~g~~~~~g~~--Gel~v~ 294 (437)
T 2y27_A 244 LSEVMGPGVASECVE---TKDGPTIWEDHFYPEIIDPETGEVLPDGEL--GELVFT 294 (437)
T ss_dssp ETTTTEEEEEECCTT---TCSSCEECTTTEEEEEECTTTCCBCCTTCC--EEEEEE
T ss_pred chhhcCCeeEEecCC---CCCceeEccCceEEEEEcCCCCCCCCCCCc--cEEEEe
Confidence 9998432 2222211 111256678999999999 56999999995 999994
No 37
>2jgp_A Tyrocidine synthetase 3; multifunctional enzyme, antibiotic biosynthesis, condensatio domain, peptide bond formation, ligase; 1.85A {Brevibacillus brevis}
Probab=98.58 E-value=2.4e-10 Score=123.32 Aligned_cols=132 Identities=11% Similarity=0.006 Sum_probs=105.4
Q ss_pred hHHHhhCCChhHHHHHHHHHHHhhhccCCC-ChHHHHHHHHHHHhcCCCCCCchhHHHHHhhhcccccccCCCC----C-
Q 007715 11 EDLMKVGLKLEEAEEFDKILKQVISCSKGL-DAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIKGPP----L- 84 (592)
Q Consensus 11 ~~~~~~~~~~~~~~~f~~~l~~~~~~~~~~-~hq~~pf~~~lv~~l~~~r~~~~~~~plfq~~~~~~~~~~~~~----~- 84 (592)
-+.+|+|+.++...+|.++|+++++...++ +||++||++ |++.+++.|.. ++.|+||++|++++.+.... .
T Consensus 372 ~n~lplr~~~~~~~~~~~~l~~v~~~~~~~~~h~~~p~~~-i~~~l~~~r~~--~~~~lf~~~~~~~~~~~~~~~~~~~~ 448 (520)
T 2jgp_A 372 VNTLAMRNKPQREKTFSEFLQEVKQNALDAYGHQDYPFEE-LVEKLAIARDL--SRNPLFDTVFTFQNSTEEVMTLPECT 448 (520)
T ss_dssp CEEEEEEECCCTTSBHHHHHHHHHHHHHHHHHTCCSCHHH-HHHHTCCCCCT--TSCSSCSEEEEEECCCCSCCCCSSEE
T ss_pred eeeeeEEecCCCCCCHHHHHHHHHHHHHHHHHhccCCHHH-HHHHhcCCCCC--CCCCcEEEEEEEecCCCccccCCCce
Confidence 367899999999999999999999998877 999999999 99999887774 44566999999998653221 0
Q ss_pred -CcCCCccc--cccccHHHHHHHhCCcccccc-CCCCCcCHHHHHHHHhhCHHHHHHHHHhhccceeecc
Q 007715 85 -YWFPSLDQ--SKLTNLGNALEIHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREA 150 (592)
Q Consensus 85 -~~~~~~~~--~~~~dl~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~ 150 (592)
...+.... ..++||.+.+.+.++++...+ |+. ++|+.++++++.++|.++|+++..+++.+
T Consensus 449 ~~~~~~~~~~~~~~~~L~l~~~~~~~~l~~~~~y~~-----~~~~~~~i~~l~~~~~~lL~~l~~~p~~~ 513 (520)
T 2jgp_A 449 LAPFMTDETGQHAKFDLTFSATEEREEMTIGVEYST-----SLFTRETMERFSRHFLTIAASIVQNPHIR 513 (520)
T ss_dssp EEECSSCSSCSBCSSSEEEEEEECSSCEEEEEEEET-----TTCCHHHHHHHHHHHHHHHHHHHHCTTCB
T ss_pred eEEeecCCCCcceeeeeEEEEEECCCeEEEEEEECh-----hhCCHHHHHHHHHHHHHHHHHHHhCccCc
Confidence 01111122 678899888877788888888 998 99999999999999999999987544433
No 38
>1l5a_A Amide synthase, VIBH; nonribosomal peptide synthetase, NRPS condensation domain, vibriobactin, biosynthetic protein; 2.55A {Vibrio cholerae} SCOP: c.43.1.2 c.43.1.2
Probab=98.11 E-value=8.3e-09 Score=108.50 Aligned_cols=136 Identities=7% Similarity=-0.117 Sum_probs=102.3
Q ss_pred hHHHhhCCChhHHHHHHHHHHHhhhccCCC-ChHHHHHHHHHHHhcCCCCCCchhHHHHHhhhcccccccCCC--CCCc-
Q 007715 11 EDLMKVGLKLEEAEEFDKILKQVISCSKGL-DAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIKGP--PLYW- 86 (592)
Q Consensus 11 ~~~~~~~~~~~~~~~f~~~l~~~~~~~~~~-~hq~~pf~~~lv~~l~~~r~~~~~~~plfq~~~~~~~~~~~~--~~~~- 86 (592)
-+.+|+++.++...+|.++++++++...++ +||++||++ |++.++..+. . .|+|+++|++++.+... ....
T Consensus 276 ~n~lplr~~~~~~~t~~~~l~~v~~~~~~~~~h~~~~~~~-i~~~l~~~~~--~--~~lf~~~~~~~~~~~~~~~~~~~~ 350 (436)
T 1l5a_A 276 VNSLPLLRLSAQQTSLGNYLKQSGQAIRSLYLHGRYRIEQ-IEQDQGLNAE--Q--SYFMSPFINILPFESPHFADCQTE 350 (436)
T ss_dssp CEEEEEECCCCTTCBHHHHHHHHHHHHHHHHHTTTSCHHH-HHHHTTCCTT--C--CBCCCSEEEEECCCCCCCTTCEEE
T ss_pred EEEEEEEEecCCCCCHHHHHHHHHHHHHHHhhhcCCCHHH-HHHHhccccc--C--CCccceEEEeeccCccccCCCeeE
Confidence 357899999999999999999999998877 999999999 9999976543 3 35699999998765431 0000
Q ss_pred -CCCccccccccHHHHHH-HhCCcccccc-CCCCCcCHHHHHHHHhhCHHHHHHHHHhhccce---eeccccccccC
Q 007715 87 -FPSLDQSKLTNLGNALE-IHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVV---FREAPKCILDR 157 (592)
Q Consensus 87 -~~~~~~~~~~dl~~~~~-~~~~~~~~~~-y~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~---~~~~~~~~~~~ 157 (592)
........+ ||.+.+. ..++++...+ |+. ++|+.++++++.++|.++|+++..+ ++.+...++.+
T Consensus 351 ~~~~~~~~~~-~l~l~v~~~~~~~l~~~~~y~~-----~~~~~~~i~~l~~~~~~~l~~l~~~~~~p~~~l~~lL~~ 421 (436)
T 1l5a_A 351 LKVLASGSAE-GINFTFRGSPQHELCLDITADL-----ASYPQSHWQSHCERFPRFFEQLLARFQQVEQDVARLLAE 421 (436)
T ss_dssp EEEEEECCCC-SEEEEEEECTTSCEEEEEEEET-----TTSCHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHS
T ss_pred EEecCCCCcc-ceEEEEEecCCCcEEEEEEeCh-----hhCCHHHHHHHHHHHHHHHHHHHhccCCCcccHHHHhCC
Confidence 000112233 7777665 3567788888 988 9999999999999999999999766 66666555333
No 39
>4hvm_A Tlmii; PSI-biology, midwest center for structural genomics, MCSG, N product biosynthesis, natPro; 2.70A {Streptoalloteichus hindustanus}
Probab=98.07 E-value=2.4e-08 Score=106.87 Aligned_cols=133 Identities=8% Similarity=-0.076 Sum_probs=92.0
Q ss_pred hHHHhhCCChhH--HHHHHHHHHHhhhccCCC-ChHHHHHHHHHHH---hcCCCCCCchhHHHHHhhhcccccccCCCCC
Q 007715 11 EDLMKVGLKLEE--AEEFDKILKQVISCSKGL-DAREIWRELVARK---VLKPWHPHGLHQLVYYSVYNDWDASIKGPPL 84 (592)
Q Consensus 11 ~~~~~~~~~~~~--~~~f~~~l~~~~~~~~~~-~hq~~pf~~~lv~---~l~~~r~~~~~~~plfq~~~~~~~~~~~~~~ 84 (592)
.+++|+++.++. ..+|.++|+++++...++ +| ++||++ |++ .|+..|.... .|+||++|++++.......
T Consensus 297 ~n~lplr~~~~~~~~~t~~~~l~~v~~~~~~~~~h-~~p~~~-i~~~~~~l~~~~~~~~--~~lf~~~~~~~~~~~~~~~ 372 (493)
T 4hvm_A 297 TDRVVFGVDLTGLREPSFRDLMSRTQAGFLDAVVH-YLPYHD-VVDLAVDLGVVTPPRV--AARWDVAVHLCRNAPSSSL 372 (493)
T ss_dssp EEEEEEEEECTTCSSCBHHHHHHHHHHHHHHHHHT-CCCHHH-HHHHHHHTTSCBTTBT--TGGGCEEECC---------
T ss_pred eceeEEEEecCCCcCCCHHHHHHHHHHHHHHHHhh-cCCHHH-HHHHHhhhCcccCCCC--CcceeEEEEEEecCCcccc
Confidence 367899999999 999999999999998887 99 999999 999 8988777444 4669999999976533210
Q ss_pred C------cCCCc----------------------ccccccc---HHHHHHHhCCcccccc-CCCCCcCHHHHHHHHhhCH
Q 007715 85 Y------WFPSL----------------------DQSKLTN---LGNALEIHGPKLLGRA-YKDPITSFRLFQKFTVEHP 132 (592)
Q Consensus 85 ~------~~~~~----------------------~~~~~~d---l~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~~i~~~ 132 (592)
. ..+.. ...+++| +.+.+...++++...+ |+. ++| .++++++
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~l~v~~~~~~l~~~~~y~~-----~l~-~~~i~~l 446 (493)
T 4hvm_A 373 TRGERTLAELGVSIELFREADLIGGDTRSATDTWDGTDTWDGTTTDLSVGELGEDMVIVLDQRR-----THP-AGGGSAL 446 (493)
T ss_dssp -----------CEEEECSHHHHCC-------CCTTCCCCCCCCCEEEEEEEETTEEEEEEEECC-------------CHH
T ss_pred ccccccccCCCceeeeccccccccccccccccccccccccCCcceEEEEEEeCCeEEEEEEEcc-----ccC-HHHHHHH
Confidence 0 00000 0123566 7877777788898999 998 899 9999999
Q ss_pred HHHHHHHHhhccceeeccccc
Q 007715 133 EAYWEIALKEISVVFREAPKC 153 (592)
Q Consensus 133 ~~~~~~~l~~~~~~~~~~~~~ 153 (592)
.++|.++|+++..+++.+...
T Consensus 447 ~~~~~~~L~~~~~~p~~~l~~ 467 (493)
T 4hvm_A 447 LDGLDAAMAQAVADPSAPLPH 467 (493)
T ss_dssp HHHHHHHHHHHHHCTTSBCCC
T ss_pred HHHHHHHHHHHHhCCCCcccc
Confidence 999999999997666555544
No 40
>2xhg_A Tyrocidine synthetase A; isomerase, nonribosomal peptide synthesis, cofactor-independ epimerization; 1.50A {Brevibacillus brevis}
Probab=96.92 E-value=7.6e-06 Score=86.49 Aligned_cols=127 Identities=12% Similarity=0.092 Sum_probs=89.0
Q ss_pred hHHHhhCCChhHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHhcCCC---CCCchhHHHHHhhhcccccccCCC----C
Q 007715 11 EDLMKVGLKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPW---HPHGLHQLVYYSVYNDWDASIKGP----P 83 (592)
Q Consensus 11 ~~~~~~~~~~~~~~~f~~~l~~~~~~~~~~~hq~~pf~~~lv~~l~~~---r~~~~~~~plfq~~~~~~~~~~~~----~ 83 (592)
.+++|+++.++...+|.++|+++++...+..||++||+. + +.+... +....... ++++|++++..... .
T Consensus 307 ~n~lplr~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~-~-~~l~~~~~~~~~~~~~~--p~~~f~~~~~~~~~~~~~~ 382 (466)
T 2xhg_A 307 TSQYPVLLDLKQTAPLSDYIKLTKENMRKIPRKGIGYDI-L-KHVTLPENRGSLSFRVQ--PEVTFNYLGQFDADMRTEL 382 (466)
T ss_dssp CEEEEEEEECSCCCSHHHHHHHHHHHHHHSGGGGTHHHH-H-HHTSCGGGSTTCCCCCC--CSEEEEEEEECCTTCSSSS
T ss_pred eeeccEEEecCCCCCHHHHHHHHHHHHHhCccCCcccce-e-eecccccccccccccCC--CeEEEeecCcccccccCCc
Confidence 366899999999999999999999987666999999985 5 555443 22223334 46888887532211 0
Q ss_pred CC--cCCC-------------ccccccccHHHHHHHhCCcccccc-CCCCCcCHHHHHHHHhhCHHHHHHHHHhhccce
Q 007715 84 LY--WFPS-------------LDQSKLTNLGNALEIHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVV 146 (592)
Q Consensus 84 ~~--~~~~-------------~~~~~~~dl~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~ 146 (592)
.. ..+. ......++|.+.+...++++...+ |+. ++|++.+|+++.++|.++|+++...
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~y~~-----~~~~~~~i~~l~~~~~~~L~~l~~~ 456 (466)
T 2xhg_A 383 FTRSPYSGGNTLGADGKNNLSPESEVYTALNITGLIEGGELVLTFSYSS-----EQYREESIQQLSQSYQKHLLAIIAH 456 (466)
T ss_dssp CEECTTCTTCCSSTTCTTSBCTTSBCCCSEEEEEEEETTEEEEEEEEET-----TTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccCccccCcccccccccccCcceeEEEEEEEECCEEEEEEEECh-----hhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0010 011236677776666677888888 998 9999999999999999999987633
No 41
>1q9j_A PAPA5, polyketide synthase associated protein 5; conjugating enzyme PAPA5, structural genomics, PSI protein structure initiative; 2.75A {Mycobacterium tuberculosis} SCOP: c.43.1.2 c.43.1.2
Probab=90.43 E-value=0.0094 Score=61.46 Aligned_cols=106 Identities=9% Similarity=-0.132 Sum_probs=67.8
Q ss_pred HHHHHHHHHHhhhccCCC-ChHHHH-----HHHHHHHhcCCCCCCchhHHHHHhhhc-ccccccCCCCC---CcC--CCc
Q 007715 23 AEEFDKILKQVISCSKGL-DAREIW-----RELVARKVLKPWHPHGLHQLVYYSVYN-DWDASIKGPPL---YWF--PSL 90 (592)
Q Consensus 23 ~~~f~~~l~~~~~~~~~~-~hq~~p-----f~~~lv~~l~~~r~~~~~~~plfq~~~-~~~~~~~~~~~---~~~--~~~ 90 (592)
..+|.++++++++...++ +||++| |++ +++.+++. .|+ +++| ++...+..... ... ...
T Consensus 297 ~~~~~~~l~~v~~~~~~~~~~~~~~~~~l~~~~-i~~~~~~~-------~pl-~~~~~n~~~~~~~~~~~~~~~~~~~~~ 367 (422)
T 1q9j_A 297 NTDIVDLASDIVATLRADLANGVIQQSGLHFGT-AFEGTPPG-------LPP-LVFCTDATSFPTMRTPPGLEIEDIKGQ 367 (422)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHTHHHHSCCBGGG-GGGCCCSS-------SCC-CEEEECCCCCCSCCCCTTCEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHhcCeeeecccchHH-HhcccCCC-------CCc-eEEEecCCcCCCCCCCCCceeEeeecc
Confidence 457999999999998877 999996 889 98888642 233 5555 44322211110 000 000
Q ss_pred cc-cccccHHHH-HHHhCCccccccCCCCCcCHHHHHHHHhhCHHHHHHHHHhhccce
Q 007715 91 DQ-SKLTNLGNA-LEIHGPKLLGRAYKDPITSFRLFQKFTVEHPEAYWEIALKEISVV 146 (592)
Q Consensus 91 ~~-~~~~dl~~~-~~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~ 146 (592)
.. ..++++.+. +...++++...+|+. + .+++++.++|.++|+++..+
T Consensus 368 ~~~~~~~~l~~~~~~~~~~~l~~~~y~~-----~----~~~~~l~~~~~~~L~~l~~~ 416 (422)
T 1q9j_A 368 FYCSISVPLDLYSCAVYAGQLIIEHHGH-----I----AEPGKSLEAIRSLLCTVPSE 416 (422)
T ss_dssp ECCBSSCCCCEEEEEEETTEEEEEEESS-----C----SSHHHHHHHHHHHHHHTTTS
T ss_pred cccCCCCCceEEEEEeeCCeEEEEEecC-----c----cchHHHHHHHHHHHHHhhcC
Confidence 11 345666655 445566666655765 3 88999999999999998633
No 42
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=88.52 E-value=3.9 Score=41.89 Aligned_cols=102 Identities=11% Similarity=0.082 Sum_probs=76.9
Q ss_pred CCCCceEEEEeccCCCCC-CceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCC--CHHHHHHHHHHHHhCCeEEec
Q 007715 188 KEDNTVAIVWREDRCDES-AVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPM--TVRAVIIYLAIILAGYVVVSI 263 (592)
Q Consensus 188 ~~pd~~Al~~~~~~~~~~-~~~~lTy~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~--~~e~v~a~lA~~k~Ga~~vpl 263 (592)
..++.+|.+....|..+. ....+|.+.+...+..+++.+... ++++|++..+++. ....+..+++.+..|+..+++
T Consensus 87 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 166 (437)
T 2y27_A 87 VPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPF 166 (437)
T ss_dssp SCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECC
T ss_pred CChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeC
Confidence 345677755444332222 235689999988888888888778 9999999999986 344455678889999999987
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEEecce
Q 007715 264 ADSFAAREIATRLRVSKAKGIFTQDFI 290 (592)
Q Consensus 264 d~~~~~~~l~~~l~~~~~~~iv~~~~~ 290 (592)
+. ...+++...+++.++.++++.+.+
T Consensus 167 ~~-~~~~~~~~~i~~~~~t~l~~~Ps~ 192 (437)
T 2y27_A 167 GG-GQTEKQVQLIQDFRPDIIMVTPSY 192 (437)
T ss_dssp CS-CCHHHHHHHHHHHCCSEEEECHHH
T ss_pred CC-CCHHHHHHHHHHhCCCEEEECHHH
Confidence 65 478899999999999999987754
No 43
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=87.74 E-value=4.5 Score=41.49 Aligned_cols=101 Identities=14% Similarity=0.072 Sum_probs=76.2
Q ss_pred CCCceEEEEeccCCCCC-CceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCC--HHHHHHHHHHHHhCCeEEecC
Q 007715 189 EDNTVAIVWREDRCDES-AVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMT--VRAVIIYLAIILAGYVVVSIA 264 (592)
Q Consensus 189 ~pd~~Al~~~~~~~~~~-~~~~lTy~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~--~e~v~a~lA~~k~Ga~~vpld 264 (592)
.++.+|.+....|..+. ....+|.+.+...+..+++.+... ++++|++..+++-+ ...+..+++.+..|+..++++
T Consensus 90 ~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 169 (443)
T 2y4o_A 90 PREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMS 169 (443)
T ss_dssp CGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCC
T ss_pred ChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECC
Confidence 45666655433322222 234689999988888888888778 99999999999863 444566788899999999876
Q ss_pred CCCCHHHHHHHHHhcCeeEEEEecce
Q 007715 265 DSFAAREIATRLRVSKAKGIFTQDFI 290 (592)
Q Consensus 265 ~~~~~~~l~~~l~~~~~~~iv~~~~~ 290 (592)
. ...+++...+++.++.+++..+.+
T Consensus 170 ~-~~~~~~~~~i~~~~~t~l~~~Ps~ 194 (443)
T 2y4o_A 170 G-GQTEKQVQLIRDFEPKIILVTPSY 194 (443)
T ss_dssp S-CCHHHHHHHHHHHCCSEEEECHHH
T ss_pred C-CCHHHHHHHHHHhCCcEEEECHHH
Confidence 5 478889999999999999987754
No 44
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=87.59 E-value=3.8 Score=41.95 Aligned_cols=99 Identities=12% Similarity=0.028 Sum_probs=77.3
Q ss_pred CceEEEEeccCCCCC-CceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCC--CHHHHHHHHHHHHhCCeEEecCCC
Q 007715 191 NTVAIVWREDRCDES-AVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPM--TVRAVIIYLAIILAGYVVVSIADS 266 (592)
Q Consensus 191 d~~Al~~~~~~~~~~-~~~~lTy~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~--~~e~v~a~lA~~k~Ga~~vpld~~ 266 (592)
+.+|.+....|..+. ....+|.+.+...+..+++.+... +.++|++..+++- ....+..+++.+..|+..++.++
T Consensus 86 ~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~- 164 (436)
T 3qov_A 86 RDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAA- 164 (436)
T ss_dssp HHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCS-
T ss_pred CCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCC-
Confidence 778876554432222 235689999999888888888888 9999999999874 44556677889999999988765
Q ss_pred CCHHHHHHHHHhcCeeEEEEecce
Q 007715 267 FAAREIATRLRVSKAKGIFTQDFI 290 (592)
Q Consensus 267 ~~~~~l~~~l~~~~~~~iv~~~~~ 290 (592)
...+++...+++.++.+++..+.+
T Consensus 165 ~~~~~~~~~i~~~~~t~~~~~P~~ 188 (436)
T 3qov_A 165 GNSKRQIKFISDFKTTALHAIPSY 188 (436)
T ss_dssp CCHHHHHHHHHHHTCCEEECCHHH
T ss_pred CCHHHHHHHHHHHCCCEEEECHHH
Confidence 467888999999999999887754
No 45
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=78.10 E-value=6.2 Score=41.79 Aligned_cols=100 Identities=12% Similarity=0.012 Sum_probs=71.2
Q ss_pred CCCeEEEEeCCCCCCCCcEEEeCCchHHHHH---HHhhhhcCCCCCCEEEEecccchhchhHHHHHHHHcCCEEEEeCCC
Q 007715 355 VDAVVNILFSSGTTGEPKAIPWTQLSSIRCT---AEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS 431 (592)
Q Consensus 355 ~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~---~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lvl~~~~ 431 (592)
|+.+|.+.+..+.++ ..+|.+.+...+ .......++.++|++...++-+.... ..+++++..|+..+.++..
T Consensus 34 p~~~a~~a~~~~~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~-~~~lA~~~~Gav~vpl~~~ 108 (550)
T 3rix_A 34 ALVPGTIAFTDAHIE----VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFF-MPVLGALFIGVAVAPANDI 108 (550)
T ss_dssp HTSTTCEEEEETTTC----CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTH-HHHHHHHHHTCEEEECCTT
T ss_pred CCCceEEEeeecCCC----cEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccHH-HHHHHHHHcCCEEeecCCc
Confidence 345555544444333 357888775443 33334568999999988887665433 4467899999999988767
Q ss_pred CChhhHHHHHHHhCCcEEEccHHHHHHH
Q 007715 432 PLERSFGKFVQDAGVTVLGTVPSLVKAW 459 (592)
Q Consensus 432 ~~~~~l~~~i~~~~vt~l~~~Ps~l~~l 459 (592)
...+++...++..++.++++.+..+..+
T Consensus 109 ~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 136 (550)
T 3rix_A 109 YNERELLNSMNISQPTVVFVSKKGLQKI 136 (550)
T ss_dssp CCHHHHHHHHHHHCCSEEEECGGGHHHH
T ss_pred CCHHHHHHHHHhcCCeEEEEcHHHHHHH
Confidence 7778999999999999999887655544
No 46
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=77.58 E-value=13 Score=38.69 Aligned_cols=95 Identities=13% Similarity=0.010 Sum_probs=70.9
Q ss_pred CCCCeEEEEeCCCCCCCCcEEEeCCchHHHHHH---HhhhhcCCCCCCEEEEecccchhchhHHHHHHHHcCCEEEEeCC
Q 007715 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA---EGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (592)
Q Consensus 354 ~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~---~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lvl~~~ 430 (592)
.|+.+|++. .+-.+|.+.+...+. ......++.++|++...++-+.... ..+++++..|+..+.++.
T Consensus 19 ~pd~~Al~~---------~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~-~~~lA~~~~Ga~~vpl~~ 88 (509)
T 3ivr_A 19 FPDRTAFMV---------DGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMI-ELIGAVALIGAILLPVNY 88 (509)
T ss_dssp STTSEEEEE---------TTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHH-HHHHHHHHTTCEEEECCT
T ss_pred CCCceEEEE---------CCcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHH-HHHHHHHHhCCEEEecCC
Confidence 467788664 124688887754443 3334568999999988887765433 446788999999999887
Q ss_pred CCChhhHHHHHHHhCCcEEEccHHHHHH
Q 007715 431 SPLERSFGKFVQDAGVTVLGTVPSLVKA 458 (592)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~Ps~l~~ 458 (592)
....+++..++++.++.+++..+.....
T Consensus 89 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~ 116 (509)
T 3ivr_A 89 RLNADEIAFVLGDGAPSVVVAGTDYRDI 116 (509)
T ss_dssp TSCHHHHHHHHHHHCEEEEEECSTTHHH
T ss_pred CCCHHHHHHHHHhcCceEEEECcchhhh
Confidence 7778899999999999999988776554
No 47
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=75.36 E-value=17 Score=38.34 Aligned_cols=103 Identities=12% Similarity=-0.009 Sum_probs=72.3
Q ss_pred CCCCeEEEEeCCCC-CCCCcEEEeCCchHHHHH---HHhhhhcCCCCCCEEEEecccchhchhHHHHHHHHcCCEEEEeC
Q 007715 354 PVDAVVNILFSSGT-TGEPKAIPWTQLSSIRCT---AEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQ 429 (592)
Q Consensus 354 ~~~~~a~iiyTSGT-TG~PKgV~~sh~~l~~~~---~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lvl~~ 429 (592)
.|+.+|++....+. .+. .-.+|.+.+...+ .......++.++|++...++-+.... ..+++++..|+..+.++
T Consensus 32 ~p~~~A~~~~~~~~~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~-~~~lA~~~~G~~~vpl~ 108 (549)
T 3g7s_A 32 FGEKTAIISAEPKFPSEF--PESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYV-MTIYALWRVAATPVPIN 108 (549)
T ss_dssp HTTSEEEEEESSCCCCSS--CSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHH-HHHHHHHHTTCEEEECC
T ss_pred CCCceEEEeCCCcccccc--cceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHH-HHHHHHHHhCCEEEccC
Confidence 46778876543221 121 2356777765433 33334568999999988887765543 44678999999999888
Q ss_pred CCCChhhHHHHHHHhCCcEEEccHHHHHHH
Q 007715 430 GSPLERSFGKFVQDAGVTVLGTVPSLVKAW 459 (592)
Q Consensus 430 ~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l 459 (592)
.....+++..++++.++..++..+.....+
T Consensus 109 ~~~~~~~l~~il~~~~~~~~i~~~~~~~~~ 138 (549)
T 3g7s_A 109 PMYKSFELEHILNDSEATTLVVHSMLYENF 138 (549)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEEGGGHHHH
T ss_pred CCCCHHHHHHHHHhcCCCEEEEChHHHHHH
Confidence 667778999999999999999887655444
No 48
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=75.25 E-value=19 Score=37.86 Aligned_cols=100 Identities=16% Similarity=0.002 Sum_probs=72.0
Q ss_pred CCCCeEEEEeCCCCCCCCcEEEeCCchHHHHH---HHhhhhcCCCCCCEEEEecccchhchhHHHHHHHHcCCEEEEeCC
Q 007715 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCT---AEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (592)
Q Consensus 354 ~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~---~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lvl~~~ 430 (592)
.|+.+|++....+ .+-.+|.+.+...+ .......++.++|++...++-+.... ..+++++..|+..+.++.
T Consensus 31 ~p~~~a~~~~~~~-----~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~-~~~lA~~~~Gav~vpl~~ 104 (541)
T 1v25_A 31 FGRKEVVSRLHTG-----EVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHL-EAYFAVPGMGAVLHTANP 104 (541)
T ss_dssp STTCEEEEECTTS-----CEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHH-HHHHHHHHTTCEEEECCT
T ss_pred CCCceEEEEecCC-----CCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHH-HHHHHHHhcCcEEEecCc
Confidence 3567776643211 34568888775443 33334568999999988887665443 346788999999998886
Q ss_pred CCChhhHHHHHHHhCCcEEEccHHHHHHH
Q 007715 431 SPLERSFGKFVQDAGVTVLGTVPSLVKAW 459 (592)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l 459 (592)
....+++..++++.++.++++.+.....+
T Consensus 105 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 133 (541)
T 1v25_A 105 RLSPKEIAYILNHAEDKVLLFDPNLLPLV 133 (541)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECGGGHHHH
T ss_pred ccCHHHHHHHHHhCCCcEEEEChhHHHHH
Confidence 67778999999999999999887765444
No 49
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=75.15 E-value=25 Score=37.24 Aligned_cols=101 Identities=8% Similarity=-0.044 Sum_probs=71.8
Q ss_pred CCCCeEEEEeCCCCCCCCcEEEeCCchHHHHHH---Hhhhhc-CCCCCCEEEEecccchhchhHHHHHHHHcCCEEEEeC
Q 007715 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA---EGWAHI-DLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQ 429 (592)
Q Consensus 354 ~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~---~~~~~~-~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lvl~~ 429 (592)
.|+.+|++.... .| ++..+|.+.+...+. ...... ++.++|++...++-+.... ..+++++..|+..+.++
T Consensus 56 ~p~~~al~~~~~--~g--~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e~~-~~~lA~~~~Ga~~vpl~ 130 (570)
T 3c5e_A 56 RPPSPALWWVNG--KG--KELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWW-LVILGCIRAGLIFMPGT 130 (570)
T ss_dssp SCCCEEEEEECS--SS--CEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHHHH-HHHHHHHHHTCEEEECC
T ss_pred CCCceEEEEEcC--CC--ceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHHHH-HHHHHHHHcCeEEEecC
Confidence 457788765421 12 245688887754433 322334 8899999988887765543 34678899999999887
Q ss_pred CCCChhhHHHHHHHhCCcEEEccHHHHHHH
Q 007715 430 GSPLERSFGKFVQDAGVTVLGTVPSLVKAW 459 (592)
Q Consensus 430 ~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l 459 (592)
.....+++..++++.++..+++.+.....+
T Consensus 131 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 160 (570)
T 3c5e_A 131 IQMKSTDILYRLQMSKAKAIVAGDEVIQEV 160 (570)
T ss_dssp TTCCHHHHHHHHHHHTCSEEEEETTTHHHH
T ss_pred CCCCHHHHHHHHHhcCCeEEEechHHHHHH
Confidence 666778899999999999999877665544
No 50
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=71.49 E-value=15 Score=38.65 Aligned_cols=97 Identities=15% Similarity=0.097 Sum_probs=69.8
Q ss_pred CCCCeEEEEeCCCCCCCCcEEEeCCchHHHHH---HHhhhhcCCCCCCEEEEecccchhchhHHHHHHHHcCCEEEEeCC
Q 007715 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCT---AEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (592)
Q Consensus 354 ~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~---~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lvl~~~ 430 (592)
.|+.+|++. +.+| -.+|.+.+...+ .......++.++|++....+-+...- ..+++++..|+..+.++.
T Consensus 35 ~p~~~a~~~---~~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~-~~~la~~~~Gav~vpl~~ 106 (536)
T 3ni2_A 35 HSSKPCLIN---GANG----DVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFV-LAFLGASHRGAIITAANP 106 (536)
T ss_dssp STTSEEEEE---TTTC----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHH-HHHHHHHHHTCEEEECCT
T ss_pred CCCceEEEE---CCCC----CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHH-HHHHHHHHhCCEEeccCC
Confidence 467888654 2223 357887775433 33334568999999988887765433 446788999999998876
Q ss_pred CCChhhHHHHHHHhCCcEEEccHHHHHH
Q 007715 431 SPLERSFGKFVQDAGVTVLGTVPSLVKA 458 (592)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~Ps~l~~ 458 (592)
....+++...+++.++.+++..+.....
T Consensus 107 ~~~~~~l~~~l~~~~~~~~i~~~~~~~~ 134 (536)
T 3ni2_A 107 FSTPAELAKHAKASRAKLLITQACYYEK 134 (536)
T ss_dssp TCCHHHHHHHHHHHTEEEEEECGGGTHH
T ss_pred CCCHHHHHHHHHhcCCEEEEEChHHHHH
Confidence 6778899999999999999887654433
No 51
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=71.18 E-value=25 Score=36.47 Aligned_cols=98 Identities=9% Similarity=-0.032 Sum_probs=69.1
Q ss_pred CCCCeEEEEeCCCCCCCCcEEEeCCchHHHHHH---HhhhhcCCCCCCEEEEecccchhchhHHHHHHHHcCCEEEEeCC
Q 007715 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA---EGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (592)
Q Consensus 354 ~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~---~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lvl~~~ 430 (592)
.|+.+|++.. .+ +..+|++.+...+. ......++.++|++...++-+.... ..+++++..|+..+.++.
T Consensus 15 ~p~~~a~~~~---~~----~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~-~~~lA~~~~G~~~vpl~~ 86 (504)
T 1t5h_X 15 APDHCALAVP---AR----GLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVV-IAILALHRLGAVPALLNP 86 (504)
T ss_dssp CTTSEEEEET---TT----TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHH-HHHHHHHHHTCEEEEECT
T ss_pred CCCceEEEEc---CC----CceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHH-HHHHHHHHhCcEEEecCC
Confidence 4577777642 11 24688887754433 3334568899999988887775543 446788999999998887
Q ss_pred CCChhhHHHHHHHhCCcEEEc--cHHHHHHH
Q 007715 431 SPLERSFGKFVQDAGVTVLGT--VPSLVKAW 459 (592)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~--~Ps~l~~l 459 (592)
...++++..++++.+++.++. .+.....+
T Consensus 87 ~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~ 117 (504)
T 1t5h_X 87 RLKSAELAELIKRGEMTAAVIAVGRQVADAI 117 (504)
T ss_dssp TSCHHHHHHHHHHTTCSEEEECC--CHHHHH
T ss_pred ccChHHHHHHHhhcCCcEEEEecchhhhhhh
Confidence 777789999999999999888 55554444
No 52
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=71.03 E-value=20 Score=35.48 Aligned_cols=100 Identities=9% Similarity=0.044 Sum_probs=67.2
Q ss_pred CCCceEEEEeccCCCCC-CceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCC--HHHHHHHHHHHHhCCeEEecC
Q 007715 189 EDNTVAIVWREDRCDES-AVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMT--VRAVIIYLAIILAGYVVVSIA 264 (592)
Q Consensus 189 ~pd~~Al~~~~~~~~~~-~~~~lTy~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~--~e~v~a~lA~~k~Ga~~vpld 264 (592)
.++.+|.+....|..+. ....+|.+.+...+..+++.+... +.++|++..++|-+ .--+...++++..|+.+++.+
T Consensus 89 ~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~~ 168 (369)
T 3hgu_A 89 PADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSID 168 (369)
T ss_dssp CTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECCC
T ss_pred CccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECcc
Confidence 45666666544332222 224678888888887777777777 99999999999862 233444555689999666643
Q ss_pred CCCCHH-----------------------HHHHHHHhcCeeEEEEecce
Q 007715 265 DSFAAR-----------------------EIATRLRVSKAKGIFTQDFI 290 (592)
Q Consensus 265 ~~~~~~-----------------------~l~~~l~~~~~~~iv~~~~~ 290 (592)
+.+. ++...+++.++.++++.+.+
T Consensus 169 --~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~ 215 (369)
T 3hgu_A 169 --IDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPV 215 (369)
T ss_dssp --CCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHH
T ss_pred --CChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHH
Confidence 3344 66668899999999887653
No 53
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=69.30 E-value=32 Score=35.18 Aligned_cols=104 Identities=14% Similarity=0.052 Sum_probs=71.5
Q ss_pred CCCCeEEEEeCC--CCCCCCcEEEeCCchHHHHHHHh---hhhcCCCCCCEEEEecccchhchhHHHHHHHHcCCEEEEe
Q 007715 354 PVDAVVNILFSS--GTTGEPKAIPWTQLSSIRCTAEG---WAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALY 428 (592)
Q Consensus 354 ~~~~~a~iiyTS--GTTG~PKgV~~sh~~l~~~~~~~---~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lvl~ 428 (592)
.|+.+|++.... +.+| ....+|.+.+...+... ....+. ++|++....+-+.... ..+|+++..|+..+.+
T Consensus 37 ~pd~~Al~~~~~~~~~~g--~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~-~~~lA~~~~G~v~vpl 112 (480)
T 3t5a_A 37 QPHDPAFTFMDYEQDWDG--VAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYV-VAFLGALQAGRIAVPL 112 (480)
T ss_dssp STTSEEEEEEETTTCTTC--EEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHH-HHHHHHHHTTCEEEEE
T ss_pred CCCCceEEEecccCCCCC--ceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHH-HHHHHHHHhCcEEEee
Confidence 467888765532 2223 34678888875544333 234455 8999988777665443 4467889999999988
Q ss_pred CC---CCChhhHHHHHHHhCCcEEEccHHHHHHHHh
Q 007715 429 QG---SPLERSFGKFVQDAGVTVLGTVPSLVKAWRN 461 (592)
Q Consensus 429 ~~---~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~ 461 (592)
+. ....+++..++++.++..++..+.....+.+
T Consensus 113 ~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~ 148 (480)
T 3t5a_A 113 SVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQ 148 (480)
T ss_dssp CSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHH
T ss_pred CCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHH
Confidence 64 3345789999999999999998877665543
No 54
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=67.12 E-value=33 Score=35.71 Aligned_cols=95 Identities=9% Similarity=-0.006 Sum_probs=69.1
Q ss_pred CCCCeEEEEeCCCCCCCCcEEEeCCchHHHHH---HHhhhhcCCCCCCEEEEecccchhchhHHHHHHHHcCCEEEEeCC
Q 007715 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCT---AEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (592)
Q Consensus 354 ~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~---~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lvl~~~ 430 (592)
.|+.+|++.. | +...+|.+.+...+ .......++.++|++...++-+.... ..+|+++..|+..+.++.
T Consensus 29 ~p~~~A~~~~--~-----~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~-~~~lA~~~~G~~~vpl~~ 100 (517)
T 3r44_A 29 SPRLQAYVEP--S-----TDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFC-CLFYGAAKLGAVAVPINT 100 (517)
T ss_dssp STTSEEEEEG--G-----GTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHH-HHHHHHHHHTCEEEECCT
T ss_pred CCCCeEEEeC--C-----cCceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHH-HHHHHHHHhCcEEEecCc
Confidence 4577886653 1 22468888775443 33334568999999988887765444 346789999999998886
Q ss_pred CCChhhHHHHHHHhCCcEEEccHHHH
Q 007715 431 SPLERSFGKFVQDAGVTVLGTVPSLV 456 (592)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~Ps~l 456 (592)
....+++..++++.++.+++..+...
T Consensus 101 ~~~~~~l~~~l~~~~~~~vi~~~~~~ 126 (517)
T 3r44_A 101 RLAAPEVSFILSDSGSKVVIYGAPSA 126 (517)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECGGGH
T ss_pred ccCHHHHHHHHHhcCceEEEECCchH
Confidence 77778899999999999998766543
No 55
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=66.32 E-value=29 Score=36.68 Aligned_cols=95 Identities=8% Similarity=-0.047 Sum_probs=69.2
Q ss_pred CCCCeEEEEeCCCCCCCCcEEEeCCchHHHHHH---HhhhhcCCCCCCEEEEecccchhchhHHHHHHHHcCCEEEEeCC
Q 007715 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA---EGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (592)
Q Consensus 354 ~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~---~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lvl~~~ 430 (592)
.|+.+|++. . +-.+|.+.+...+. ......++.++|++...++-+.... ..+++++..|+..+.++.
T Consensus 52 ~p~~~Al~~-~--------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~-~~~lA~~~~Gav~vpl~~ 121 (563)
T 1amu_A 52 RPNNVAIVC-E--------NEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLF-IGILAVLKAGGAYVPIDI 121 (563)
T ss_dssp CTTSEEEEE-T--------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHH-HHHHHHHHTTCEEEECCT
T ss_pred CCCCeEEEe-C--------CceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHH-HHHHHHHHhCCEEEEeCC
Confidence 467777653 1 23578877754433 3334568999999988877665443 346788999999998887
Q ss_pred CCChhhHHHHHHHhCCcEEEccHHHHHH
Q 007715 431 SPLERSFGKFVQDAGVTVLGTVPSLVKA 458 (592)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~Ps~l~~ 458 (592)
....+++..++++.++..++..+.....
T Consensus 122 ~~~~~~l~~il~~~~~~~li~~~~~~~~ 149 (563)
T 1amu_A 122 EYPKERIQYILDDSQARMLLTQKHLVHL 149 (563)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECGGGHHH
T ss_pred CCcHHHHHHHHHhcCCCEEEEcCchhhh
Confidence 7777899999999999999988765543
No 56
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=66.06 E-value=30 Score=37.48 Aligned_cols=97 Identities=13% Similarity=0.041 Sum_probs=70.6
Q ss_pred CCCCeEEEEeCCCCCCCCcEEEeCCchHHHHH---HHhhh-hcCCCCCCEEEEecccchhchhHHHHHHHHcCCEEEEeC
Q 007715 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCT---AEGWA-HIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQ 429 (592)
Q Consensus 354 ~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~---~~~~~-~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lvl~~ 429 (592)
.++.+|++... ..+| .+..+|.+.+...+ ..... ..++.++|++...++.+.... ..+++++..|+..+.++
T Consensus 95 ~pd~~Al~~~~-~~~~--~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v-~a~lA~~~~Gav~vpl~ 170 (663)
T 1ry2_A 95 TPNKKAIIFEG-DEPG--QGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAI-ITLLAISRIGAIHSVVF 170 (663)
T ss_dssp CTTSEEEEEEC-SSTT--CCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHH-HHHHHHHHTTCEEEECC
T ss_pred CCCceEEEEEc-CCCC--ceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHH-HHHHHHHHcCCEEEeeC
Confidence 46778876542 2222 23468887775433 33334 678999999999888776544 44678999999999888
Q ss_pred CCCChhhHHHHHHHhCCcEEEccHH
Q 007715 430 GSPLERSFGKFVQDAGVTVLGTVPS 454 (592)
Q Consensus 430 ~~~~~~~l~~~i~~~~vt~l~~~Ps 454 (592)
....++.+...|++.++.++++...
T Consensus 171 ~~~~~~~l~~~l~~~~~~~li~~~~ 195 (663)
T 1ry2_A 171 AGFSSNSLRDRINDGDSKVVITTDE 195 (663)
T ss_dssp TTSCHHHHHHHHHHHTCSEEEEESB
T ss_pred CCCCHHHHHHHHHhcCCeEEEEccc
Confidence 7778889999999999999988653
No 57
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=65.51 E-value=33 Score=36.45 Aligned_cols=95 Identities=12% Similarity=0.051 Sum_probs=69.5
Q ss_pred CCCCeEEEEeCCCCCCCCcEEEeCCchHHHHH---HHhhhhcCCCCCCEEEEecccchhchhHHHHHHHHcCCEEEEeCC
Q 007715 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCT---AEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (592)
Q Consensus 354 ~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~---~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lvl~~~ 430 (592)
.|+.+|++.... .| ....+|.+.+.... .......+++++|++...++-+.... ..+++++..|+..+.++.
T Consensus 69 ~pd~~Al~~~~~--~g--~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~-~~~lA~~~~Gav~vpl~~ 143 (580)
T 3etc_A 69 SPEKLAMIWCDD--YG--NEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFW-YCMLGLHKLGAIAVPATH 143 (580)
T ss_dssp CTTCEEEEEEES--SS--CEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHH-HHHHHHHHHTCEEEECCT
T ss_pred CCCCEEEEEEcC--CC--CEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHH-HHHHHHHhCCEEEEeCCc
Confidence 578888876532 12 24668888775433 33334568999999988887765533 346788999999998876
Q ss_pred CCChhhHHHHHHHhCCcEEEccH
Q 007715 431 SPLERSFGKFVQDAGVTVLGTVP 453 (592)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~P 453 (592)
...+.++...+++.++.++++.+
T Consensus 144 ~~~~~~l~~~l~~~~~~~ii~~~ 166 (580)
T 3etc_A 144 MLKTRDIVYRIEKAGLKMIVCIA 166 (580)
T ss_dssp TCCHHHHHHHHHHHTCCEEEEES
T ss_pred cCCHHHHHHHHHhcCCCEEEEec
Confidence 66778899999999999988754
No 58
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=62.94 E-value=40 Score=36.32 Aligned_cols=96 Identities=16% Similarity=0.060 Sum_probs=69.5
Q ss_pred CCCCeEEEEeCCCCCCCCcEEEeCCchHHHHH---HHhhhhcCCCCCCEEEEecccchhchhHHHHHHHHcCCEEEEeCC
Q 007715 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCT---AEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (592)
Q Consensus 354 ~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~---~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lvl~~~ 430 (592)
.++.+|++.. +..+| .+-.+|.+.+...+ .......+++++|++...++.+.... ..+++++..|+..+.++.
T Consensus 89 ~pd~~Al~~~-~~~~~--~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~v-va~lA~~~~Gav~vpl~~ 164 (652)
T 1pg4_A 89 NGDRTAIIWE-GDDTS--QSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAA-VAMLACARIGAVHSVIFG 164 (652)
T ss_dssp HTTSEEEEEE-CSSTT--CEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHH-HHHHHHHHHTCEEEECCT
T ss_pred CCCceEEEEE-cCCCC--ceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHH-HHHHHHHHcCcEEEecCC
Confidence 3577887643 22222 24568888775443 33334568999999998888776543 446789999999999887
Q ss_pred CCChhhHHHHHHHhCCcEEEccH
Q 007715 431 SPLERSFGKFVQDAGVTVLGTVP 453 (592)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~P 453 (592)
...++.+...|++.++.++++..
T Consensus 165 ~~~~~~l~~~l~~~~~~~li~~~ 187 (652)
T 1pg4_A 165 GFSPEAVAGCIIDSSSRLVITAD 187 (652)
T ss_dssp TSCHHHHHHHHHHHTCSEEEEES
T ss_pred CCCHHHHHHHHHhcCCCEEEEcC
Confidence 77888999999999999888753
No 59
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=62.42 E-value=26 Score=36.39 Aligned_cols=80 Identities=16% Similarity=0.103 Sum_probs=61.0
Q ss_pred EeCCchHHHHH---HHhhhhcCCCCCCEEEEecccchhchhHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHhCCcEEEc
Q 007715 375 PWTQLSSIRCT---AEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGT 451 (592)
Q Consensus 375 ~~sh~~l~~~~---~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~ 451 (592)
.+|.+.+...+ .......++.++|++...++-+...- ..+++++..|+..+.++.....+++..++++.++.++++
T Consensus 28 ~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~-~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~ 106 (503)
T 4fuq_A 28 KISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEAL-VLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVC 106 (503)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHH-HHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEEEE
T ss_pred EEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHH-HHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEEEE
Confidence 57888775443 33334568999999988887765443 446789999999998886677789999999999999998
Q ss_pred cHHH
Q 007715 452 VPSL 455 (592)
Q Consensus 452 ~Ps~ 455 (592)
.+..
T Consensus 107 ~~~~ 110 (503)
T 4fuq_A 107 DPSK 110 (503)
T ss_dssp CGGG
T ss_pred Cchh
Confidence 7643
No 60
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=60.87 E-value=58 Score=34.36 Aligned_cols=101 Identities=10% Similarity=0.022 Sum_probs=71.6
Q ss_pred CCCCeEEEEeCCCCCCCCcEEEeCCchHHHHH---HHhhhhcCCCCCCEEEEecccchhchhHHHHHHHHcCCEEEEeCC
Q 007715 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCT---AEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (592)
Q Consensus 354 ~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~---~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lvl~~~ 430 (592)
.|+.+|++.... -.+-.+|.+.+...+ .......++.++|++....+-+.... ..+|+++..|+..+.++.
T Consensus 24 ~p~~~a~~~~~~-----~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~-~~~lA~~~~G~~~vpl~~ 97 (590)
T 3kxw_A 24 SPNKKSCTFLNK-----ELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLI-QAFLGCLYAGCIAVPIYP 97 (590)
T ss_dssp CTTSEEEEEEET-----TEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHH-HHHHHHHHTTCEEEEECC
T ss_pred CCCCeEEEEEcC-----CeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHH-HHHHHHHHhCcEEEEecC
Confidence 467788765431 134578888775443 33344568999999988887765533 446788999999988864
Q ss_pred CC---ChhhHHHHHHHhCCcEEEccHHHHHHHH
Q 007715 431 SP---LERSFGKFVQDAGVTVLGTVPSLVKAWR 460 (592)
Q Consensus 431 ~~---~~~~l~~~i~~~~vt~l~~~Ps~l~~l~ 460 (592)
.. ....+..+++..++.++...+.....+.
T Consensus 98 ~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~ 130 (590)
T 3kxw_A 98 PAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFT 130 (590)
T ss_dssp CCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHC
T ss_pred CCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHH
Confidence 33 2356788899999999999888776653
No 61
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=60.80 E-value=38 Score=35.79 Aligned_cols=92 Identities=18% Similarity=0.131 Sum_probs=67.5
Q ss_pred CCCCeEEEEeCCCCCCCCcEEEeCCchHHHHH---HHhhhhcCCCCCCEEEEecccchhchhHHHHHHHHcCCEEEEeCC
Q 007715 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCT---AEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (592)
Q Consensus 354 ~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~---~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lvl~~~ 430 (592)
.|+.+|++- . +-.+|.+.+...+ .......++.++|++...++-+.... ..+++++..|+..+.++.
T Consensus 88 ~pd~~A~~~-~--------~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~-~~~lA~~~~G~~~vpl~~ 157 (570)
T 4gr5_A 88 APDAVALLH-E--------ADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMV-VALLAVLKAGGGYTMLDP 157 (570)
T ss_dssp CTTSEEEEE-T--------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHH-HHHHHHHHTTCEEEECCT
T ss_pred CCCCeEEEC-C--------CCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHH-HHHHHHHHHCCEEEEcCC
Confidence 467777653 1 2257887765443 33334568999999988887765544 346789999999999887
Q ss_pred CCChhhHHHHHHHhCCcEEEccHHH
Q 007715 431 SPLERSFGKFVQDAGVTVLGTVPSL 455 (592)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~Ps~ 455 (592)
....+++..++++.++.++++....
T Consensus 158 ~~~~~~l~~~l~~~~~~~~i~~~~~ 182 (570)
T 4gr5_A 158 QFPVERLALSLEDTGAPLLVTSRPL 182 (570)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECTTT
T ss_pred CChHHHHHHHHHhcCCCEEEecchh
Confidence 7778899999999999999876543
No 62
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=60.45 E-value=98 Score=32.21 Aligned_cols=99 Identities=12% Similarity=0.008 Sum_probs=71.4
Q ss_pred CCCCceEEEEeccCCCCC-CceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHH--HH-HHHHHHHhCCeEEe
Q 007715 188 KEDNTVAIVWREDRCDES-AVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRA--VI-IYLAIILAGYVVVS 262 (592)
Q Consensus 188 ~~pd~~Al~~~~~~~~~~-~~~~lTy~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~--v~-a~lA~~k~Ga~~vp 262 (592)
..|+.+|++....|..+. ....+|.+.+...+..... .. ++++|++...+|-+..+ .. .+++.+..|+..+.
T Consensus 179 ~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~ 255 (539)
T 1mdb_A 179 VKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVE---VCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVL 255 (539)
T ss_dssp CCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHH---HHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEE
T ss_pred CCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHH---hhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEE
Confidence 457888877654432222 2357899888766554433 34 88999999998876443 33 57889999999887
Q ss_pred cCCCCCHHHHHHHHHhcCeeEEEEecce
Q 007715 263 IADSFAAREIATRLRVSKAKGIFTQDFI 290 (592)
Q Consensus 263 ld~~~~~~~l~~~l~~~~~~~iv~~~~~ 290 (592)
.+ ...++++...+++.++.++...+..
T Consensus 256 ~~-~~~~~~~~~~i~~~~~t~~~~~P~~ 282 (539)
T 1mdb_A 256 SP-SPSPDDAFPLIEREKVTITALVPPL 282 (539)
T ss_dssp CS-SSSHHHHHHHHHHHTCSEEEECHHH
T ss_pred CC-CCCHHHHHHHHHHcCCeEEEccHHH
Confidence 64 4778899999999999999887753
No 63
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=59.64 E-value=32 Score=35.84 Aligned_cols=94 Identities=7% Similarity=-0.065 Sum_probs=67.9
Q ss_pred CCCCeEEEEeCCCCCCCCcEEEeCCchHHHHH---HHhhhhcCCCCCCEEEEecccchhchhHHHHHHHHcCCEEEEeCC
Q 007715 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCT---AEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (592)
Q Consensus 354 ~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~---~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lvl~~~ 430 (592)
.|+.+|++.. | ..+|.+.+...+ .......++.++|++...++-+.... ..+++++..|+..+.++.
T Consensus 36 ~p~~~A~~~~--~-------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~-~~~lA~~~~G~~~vpl~~ 105 (529)
T 2v7b_A 36 RAGKTAYIDD--T-------GSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALP-VAFLGALYAGVVPVVANT 105 (529)
T ss_dssp GTTSEEEECS--S-------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHH-HHHHHHHHHTCEEEECCT
T ss_pred cCCceEEEeC--C-------CCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHH-HHHHHHHHcCceEEecCc
Confidence 4677776532 1 357887765443 33334568999999988877765443 346788999999998876
Q ss_pred CCChhhHHHHHHHhCCcEEEccHHHHH
Q 007715 431 SPLERSFGKFVQDAGVTVLGTVPSLVK 457 (592)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~Ps~l~ 457 (592)
...+.++..++++.++..++..+....
T Consensus 106 ~~~~~~l~~~l~~~~~~~vi~~~~~~~ 132 (529)
T 2v7b_A 106 LLTPADYVYMLTHSHARAVIASGALVQ 132 (529)
T ss_dssp TCCHHHHHHHHHHHTCSEEEEEGGGHH
T ss_pred ccCHHHHHHHHhccCCeEEEechhhhh
Confidence 667788999999999999988766543
No 64
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=58.90 E-value=39 Score=35.44 Aligned_cols=90 Identities=14% Similarity=0.057 Sum_probs=65.8
Q ss_pred CCCCeEEEEeCCCCCCCCcEEEeCCchHHHHH---HHhhhhcCCCCCCEEEEecccchhchhHHHHHHHHcCCEEEEeCC
Q 007715 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCT---AEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (592)
Q Consensus 354 ~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~---~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lvl~~~ 430 (592)
.|+.+|++- + +-.+|.+.+...+ .......++.++|++...++-+.... ..+++++..|+..+.++.
T Consensus 43 ~p~~~Al~~---~------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~-~~~lA~~~~Gav~vpl~~ 112 (544)
T 3o83_A 43 HPHSLAIIC---G------ERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFY-IVFFALLKAGVVVLNALY 112 (544)
T ss_dssp CTTSEEEEE---T------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHH-HHHHHHHHHTCEEEECCT
T ss_pred CCCceEEEc---C------CCceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHH-HHHHHHHHhCcEEecCCC
Confidence 467888763 1 3467888775443 33334568999999988877665443 346788999998887776
Q ss_pred CCChhhHHHHHHHhCCcEEEccH
Q 007715 431 SPLERSFGKFVQDAGVTVLGTVP 453 (592)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~P 453 (592)
......+..++++.++.+++..+
T Consensus 113 ~~~~~~l~~~l~~~~~~~li~~~ 135 (544)
T 3o83_A 113 SHRQYELNAFIKQIQPKLLIGSR 135 (544)
T ss_dssp TCCHHHHHHHHHHHCCSEEEEET
T ss_pred CCCHHHHHHHHHhcCeeEEEEcc
Confidence 66778899999999999998765
No 65
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=57.75 E-value=33 Score=36.08 Aligned_cols=82 Identities=7% Similarity=-0.035 Sum_probs=62.0
Q ss_pred EeCCchHHHHHH---HhhhhcCCCCCCEEEEecccchhchhHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHhCCcEEEc
Q 007715 375 PWTQLSSIRCTA---EGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGT 451 (592)
Q Consensus 375 ~~sh~~l~~~~~---~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~ 451 (592)
.+|.+.+...+. ......++.++|++...++-+.... ..+++++..|+..+.++.....+++..++++.++.++++
T Consensus 52 ~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~-~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~ 130 (548)
T 2d1s_A 52 DYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFF-IPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFS 130 (548)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTH-HHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEE
T ss_pred EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHH-HHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEE
Confidence 578877754433 3334468999999988887765544 346788999999999887777789999999999999988
Q ss_pred cHHHHH
Q 007715 452 VPSLVK 457 (592)
Q Consensus 452 ~Ps~l~ 457 (592)
.+....
T Consensus 131 ~~~~~~ 136 (548)
T 2d1s_A 131 SKKGLD 136 (548)
T ss_dssp CTTTHH
T ss_pred cHHHHH
Confidence 765443
No 66
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=57.25 E-value=1.1e+02 Score=31.25 Aligned_cols=100 Identities=12% Similarity=0.177 Sum_probs=72.1
Q ss_pred CCCCCceEEEEeccCCCCC-CceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHH-HHHHHHHHHhCCeEEec
Q 007715 187 RKEDNTVAIVWREDRCDES-AVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRA-VIIYLAIILAGYVVVSI 263 (592)
Q Consensus 187 ~~~pd~~Al~~~~~~~~~~-~~~~lTy~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~-v~a~lA~~k~Ga~~vpl 263 (592)
...|+.+|++....|..+. ....+|.+.+...+.... ... +.++|++...+|-...+ +..+++.+..|+..+..
T Consensus 159 ~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~---~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~ 235 (501)
T 3ipl_A 159 SFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCK---ESLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIV 235 (501)
T ss_dssp CCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHH---HHTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEC
T ss_pred CCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHH---HhhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeC
Confidence 3467888877655432222 235689888876655443 334 88999999998865433 33467888999998887
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEEecce
Q 007715 264 ADSFAAREIATRLRVSKAKGIFTQDFI 290 (592)
Q Consensus 264 d~~~~~~~l~~~l~~~~~~~iv~~~~~ 290 (592)
+ .+.++++...+++.++..+.+.+..
T Consensus 236 ~-~~~~~~~~~~i~~~~~t~~~~~P~~ 261 (501)
T 3ipl_A 236 D-KFNAEQILTMIKNERITHISLVPQT 261 (501)
T ss_dssp S-SCCHHHHHHHHHHSCCCEEEECHHH
T ss_pred C-CCCHHHHHHHHHHcCCcEEEchHHH
Confidence 5 4788999999999999999987753
No 67
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=52.00 E-value=5.1 Score=42.77 Aligned_cols=31 Identities=35% Similarity=0.380 Sum_probs=26.1
Q ss_pred CCCCCeEEEEeCCCCC-CCCcEEEeCCchHHH
Q 007715 353 NPVDAVVNILFSSGTT-GEPKAIPWTQLSSIR 383 (592)
Q Consensus 353 ~~~~~~a~iiyTSGTT-G~PKgV~~sh~~l~~ 383 (592)
..++.+.++.-||||| |+||-|.+|...+-.
T Consensus 96 l~~~~i~~f~~SSGTT~gk~K~IP~t~~~l~~ 127 (609)
T 4b2g_A 96 LSAHPISEFLTSSGTSAGERKLMPTIQEELDR 127 (609)
T ss_dssp SCSSCCCEEEEEEEEETTEEEEEEECTTHHHH
T ss_pred cCCCCCCeEEeCCCCCCCCceeeecCHHHHHH
Confidence 3567778999999999 889999999987643
No 68
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=51.26 E-value=45 Score=34.59 Aligned_cols=90 Identities=10% Similarity=-0.097 Sum_probs=64.1
Q ss_pred CCCCeEEEEeCCCCCCCCcEEEeCCchHHHHH---HHhhhhcCCCCCCEEEEecccchhchhHHHHHHHHcCCEEEEeCC
Q 007715 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCT---AEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (592)
Q Consensus 354 ~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~---~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lvl~~~ 430 (592)
.|+.+|++.. +-.+|.+.+...+ .......++.++|++....+-+.... ..+++++..|+..+.++.
T Consensus 17 ~p~~~a~~~~---------~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~-~~~lA~~~~G~v~vpl~~ 86 (521)
T 3l8c_A 17 QADFPVYDCL---------GERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDML-ATFVALTKSGHAYIPVDV 86 (521)
T ss_dssp STTSEEEEET---------TEEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHH-HHHHHHHHTTCCEEEEET
T ss_pred CCCCcceecC---------CCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHH-HHHHHHHHhCCEEEecCc
Confidence 3566776531 2347887775443 33334568899999887776665433 346788999999998876
Q ss_pred CCChhhHHHHHHHhCCcEEEccH
Q 007715 431 SPLERSFGKFVQDAGVTVLGTVP 453 (592)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~P 453 (592)
...++++..++++.++..++...
T Consensus 87 ~~~~~~l~~il~~~~~~~ii~~~ 109 (521)
T 3l8c_A 87 HSAPERILAIIEIAKPSLIIAIE 109 (521)
T ss_dssp TSCHHHHHHHHHHSCCSEEEESS
T ss_pred cccHHHHHHHHHhCCCCEEEecC
Confidence 77788999999999999888654
No 69
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=50.53 E-value=49 Score=37.68 Aligned_cols=95 Identities=14% Similarity=0.007 Sum_probs=69.5
Q ss_pred CCCCeEEEEeCCCCCCCCcEEEeCCchHHHHH---HHhhhhcCCCCCCEEEEecccchhchhHHHHHHHHcCCEEEEeCC
Q 007715 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCT---AEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (592)
Q Consensus 354 ~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~---~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lvl~~~ 430 (592)
.|+.+|++.- .+| -.+|.+.+...+ .......++.++|++....+-+...- ..+++.+..|+..+.++.
T Consensus 74 ~pd~~Al~~~---~~~----~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~-v~~lA~~~~Ga~~vpl~~ 145 (979)
T 3tsy_A 74 FATKPCLING---PTG----HVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFV-LSFLAASFRGATATAANP 145 (979)
T ss_dssp TTTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHH-HHHHHHHHHTCEEEEECT
T ss_pred CCCCeEEEEC---CCC----cEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHHH-HHHHHHHHcCCEEEeeCC
Confidence 4688887642 223 357887765433 33334568999999988887765433 446789999999999887
Q ss_pred CCChhhHHHHHHHhCCcEEEccHHHH
Q 007715 431 SPLERSFGKFVQDAGVTVLGTVPSLV 456 (592)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~Ps~l 456 (592)
...++++...+++.++.++++.+...
T Consensus 146 ~~~~~~l~~~l~~~~~~~vi~~~~~~ 171 (979)
T 3tsy_A 146 FFTPAEIAKQAKASNTKLIITEARYV 171 (979)
T ss_dssp TSCHHHHHHHHHHHTEEEEEECSTTT
T ss_pred CCCHHHHHHHHHHcCCeEEEEChHHH
Confidence 77788999999999999998876543
No 70
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=48.61 E-value=53 Score=33.99 Aligned_cols=89 Identities=8% Similarity=-0.092 Sum_probs=63.2
Q ss_pred CCCCeEEEEeCCCCCCCCcEEEeCCchHHHHHH---HhhhhcCCCCCCEEEEecccchhchhHHHHHHHHcCCEEEEeCC
Q 007715 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA---EGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (592)
Q Consensus 354 ~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~~---~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lvl~~~ 430 (592)
.|+.+|++.- +-.+|.+.+...+. ......++.++|++....+-+.... ..+|+++..|+..+.++.
T Consensus 14 ~p~~~A~~~~---------~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~-~~~la~~~~G~v~vpl~~ 83 (512)
T 3fce_A 14 TPDQTAFVWR---------DAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMI-INFLGCVKAGHAYIPVDL 83 (512)
T ss_dssp STTSEEEEET---------TEEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHH-HHHHHHHHTTCCEEEEET
T ss_pred CCCceEEEeC---------CceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHH-HHHHHHHHhCCEEEeeCC
Confidence 3577776531 12478877654433 3334457889999887776654333 446789999999998876
Q ss_pred CCChhhHHHHHHHhCCcEEEcc
Q 007715 431 SPLERSFGKFVQDAGVTVLGTV 452 (592)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~ 452 (592)
....+++..++++.++.+++..
T Consensus 84 ~~~~~~l~~il~~~~~~~~i~~ 105 (512)
T 3fce_A 84 SIPADRVQRIAENSGAKLLLSA 105 (512)
T ss_dssp TSCHHHHHHHHHHSCCCEEEES
T ss_pred CCcHHHHHHHHHhcCCCEEEec
Confidence 7777899999999999888764
No 71
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=46.94 E-value=1e+02 Score=31.75 Aligned_cols=100 Identities=8% Similarity=0.066 Sum_probs=70.5
Q ss_pred CCCCceEEEEeccCCCCC-CceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHH-HHHHHHHHHhCCeEEecC
Q 007715 188 KEDNTVAIVWREDRCDES-AVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRA-VIIYLAIILAGYVVVSIA 264 (592)
Q Consensus 188 ~~pd~~Al~~~~~~~~~~-~~~~lTy~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~-v~a~lA~~k~Ga~~vpld 264 (592)
..++.+|++....|..+. ....+|.+.+...+..++. .. +.++|++...+|-+..+ +..+++++..|+..+.++
T Consensus 140 ~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~ 216 (511)
T 3e7w_A 140 VKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICA---DFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVT 216 (511)
T ss_dssp CCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHH---HSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECC
T ss_pred CCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHH---hcCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcC
Confidence 456778877654432222 2256898888766554433 34 88999999999876433 345788899999988775
Q ss_pred CC--CCHHHHHHHHHhcCeeEEEEecce
Q 007715 265 DS--FAAREIATRLRVSKAKGIFTQDFI 290 (592)
Q Consensus 265 ~~--~~~~~l~~~l~~~~~~~iv~~~~~ 290 (592)
.. ..++.+...+++.++.+++..+.+
T Consensus 217 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~ 244 (511)
T 3e7w_A 217 KDAVNKPKVLFEELKKSGLNVWTSTPSF 244 (511)
T ss_dssp HHHHHSHHHHHHHHHHHCCSEEEECHHH
T ss_pred hhhhcCHHHHHHHHHHcCCcEEEecHHH
Confidence 43 567888899999999999887654
No 72
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=43.14 E-value=1.3e+02 Score=31.43 Aligned_cols=97 Identities=12% Similarity=0.070 Sum_probs=65.0
Q ss_pred CCCCeEEEEeCCCCCCCCc--EEEeCCchHHHHHH---HhhhhcCCCCCCEEEEecccchhchhHHHHHHHHcCCEEEEe
Q 007715 354 PVDAVVNILFSSGTTGEPK--AIPWTQLSSIRCTA---EGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALY 428 (592)
Q Consensus 354 ~~~~~a~iiyTSGTTG~PK--gV~~sh~~l~~~~~---~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lvl~ 428 (592)
.|+.+|++.. .|..+..+ .-.+|.+.+...+. ......++ ++|++...++-+.... ..+|+++..|+..+.+
T Consensus 33 ~p~~~A~~~~-~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~-~~~lA~~~~Gav~vpl 109 (562)
T 3ite_A 33 HPEWKAVEVA-TGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAF-AIIVGIMKSGNTYVPI 109 (562)
T ss_dssp CTTSEEEEEE-ECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHHH-HHHHHHHHTTCEEEEC
T ss_pred CCCchhhhcc-cccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHHH-HHHHHHHHhCCEEEec
Confidence 4677886643 33333332 35678887654333 33334566 6999988887765544 3467889999999988
Q ss_pred CCCCChhhHHHHHHHhCCcEEEccH
Q 007715 429 QGSPLERSFGKFVQDAGVTVLGTVP 453 (592)
Q Consensus 429 ~~~~~~~~l~~~i~~~~vt~l~~~P 453 (592)
+.....+++..++++.++.+++...
T Consensus 110 ~~~~~~~~l~~~l~~~~~~~~i~~~ 134 (562)
T 3ite_A 110 EAGLPNDRKSFLLRDSRAAMAFVCD 134 (562)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECT
T ss_pred CCcCHHHHHHHHHHhcCCCEEEEcc
Confidence 7667778899999999999877653
No 73
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=40.32 E-value=1e+02 Score=32.95 Aligned_cols=89 Identities=4% Similarity=-0.148 Sum_probs=63.9
Q ss_pred CCCCeEEEEeCCCCCCCCcEEEeCCchHHHHH---HHhhhhcCCCCCCEEEEecccchhchhHHHHHHHHcCCEEEEeCC
Q 007715 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCT---AEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (592)
Q Consensus 354 ~~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~---~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lvl~~~ 430 (592)
.|+.+|++- . +-.+|.+.+...+ .......++.++|++....+-+...- ..+++.+..|+..+.++.
T Consensus 40 ~Pd~~Av~~-~--------~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~v-va~lailkaGa~~vpld~ 109 (620)
T 4dg8_A 40 HPHREAIRD-R--------FGSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESI-TCLLAILLSGHHYLYIDL 109 (620)
T ss_dssp CTTSEEEEE-T--------TEEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHH-HHHHHHHHTTCEEEECCT
T ss_pred CCCCeEEEc-C--------CCcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHH-HHHHHHHHhCCEEEeeCc
Confidence 467777653 1 1247888775433 33334558899999988887665443 346789999999998876
Q ss_pred CCChhhHHHHHHHhCCcEEEcc
Q 007715 431 SPLERSFGKFVQDAGVTVLGTV 452 (592)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~ 452 (592)
....+++..++++.++.++...
T Consensus 110 ~~p~~~l~~il~~~~~~~vl~~ 131 (620)
T 4dg8_A 110 KQPAAWNAELCRQVDCRLILDC 131 (620)
T ss_dssp TSCHHHHHHHHHHHTEEEEEEC
T ss_pred cChHHHHHHHHHhCCCcEEEec
Confidence 6667889999999999888744
No 74
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=40.05 E-value=97 Score=30.26 Aligned_cols=93 Identities=16% Similarity=0.184 Sum_probs=64.7
Q ss_pred CCceEEEEeccCCCCCCceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecCCCCC
Q 007715 190 DNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268 (592)
Q Consensus 190 pd~~Al~~~~~~~~~~~~~~lTy~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~v~a~lA~~k~Ga~~vpld~~~~ 268 (592)
.-++-+-.++-. .+=||+. +-..+.+.....+- +++|.+..+....+-.-+..-++|.+.|.-++.+-|...
T Consensus 49 G~~IylK~E~ln------ptGSfK~-RgA~~~i~~a~~~g~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~ 121 (344)
T 3vc3_A 49 GAYVAVKQEMMQ------PTASIAD-RPAYAMITDAEEKNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYT 121 (344)
T ss_dssp CSEEEEEEGGGS------TTSBTTH-HHHHHHHHHHHHTTCCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTS
T ss_pred CCEEEEEecCCC------CCCCcHH-HHHHHHHHHHHHcCCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCC
Confidence 335555555431 1235543 22345566666666 888887777888888888888999999988777767666
Q ss_pred HHHHHHHHHhcCeeEEEEecc
Q 007715 269 AREIATRLRVSKAKGIFTQDF 289 (592)
Q Consensus 269 ~~~l~~~l~~~~~~~iv~~~~ 289 (592)
+..-...++..++++++++..
T Consensus 122 ~~~k~~~~~~~GA~Vv~v~~~ 142 (344)
T 3vc3_A 122 SLERRVTMRAFGAELILTDPA 142 (344)
T ss_dssp CHHHHHHHHHTTCEEEEECGG
T ss_pred hHHHHHHHHHcCCEEEEECCC
Confidence 666677899999999998753
No 75
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=38.50 E-value=8.9 Score=40.69 Aligned_cols=31 Identities=39% Similarity=0.432 Sum_probs=25.4
Q ss_pred CCCCCeEEEEeCCCCC-CCCcEEEeCCchHHH
Q 007715 353 NPVDAVVNILFSSGTT-GEPKAIPWTQLSSIR 383 (592)
Q Consensus 353 ~~~~~~a~iiyTSGTT-G~PKgV~~sh~~l~~ 383 (592)
..++.+.+..-||||| |++|-+.++...+-.
T Consensus 95 L~~~pi~~f~~SSGTT~gk~K~IP~T~~~l~~ 126 (581)
T 4epl_A 95 LTGHPVPAISLSSGTSQGRPKFIPFTDELMEN 126 (581)
T ss_dssp SSSSCCSEEEEEEEEETTEEEEEEECHHHHHH
T ss_pred cCCCCcceEEecCCCCCCCccccccCHHHHHH
Confidence 3456678999999999 889999999987643
No 76
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=38.00 E-value=1.2e+02 Score=31.76 Aligned_cols=86 Identities=8% Similarity=-0.052 Sum_probs=62.3
Q ss_pred EEEeCCchHHHHHH---HhhhhcCCCCCCEEEEecccchhchhHHHHHHHHcCCEEEEeCCCCC-------hhhHHHHHH
Q 007715 373 AIPWTQLSSIRCTA---EGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPL-------ERSFGKFVQ 442 (592)
Q Consensus 373 gV~~sh~~l~~~~~---~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lvl~~~~~~-------~~~l~~~i~ 442 (592)
+-.+|.+.+...+. ......++.++|++....+-+.... ..+++++..|+..+.++.... ...+..+++
T Consensus 47 ~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~-~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~ 125 (576)
T 3gqw_A 47 EDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEFV-EAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLA 125 (576)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSHHHH-HHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHHH
T ss_pred eeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHH-HHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHHH
Confidence 45688887754443 3334568999999988887765443 446788999999988864433 467888999
Q ss_pred HhCCcEEEccHHHHHHH
Q 007715 443 DAGVTVLGTVPSLVKAW 459 (592)
Q Consensus 443 ~~~vt~l~~~Ps~l~~l 459 (592)
..++..+.........+
T Consensus 126 ~~~~~~ii~~~~~~~~~ 142 (576)
T 3gqw_A 126 SCQPAAIITGDEWLPLV 142 (576)
T ss_dssp HHCCSEEEECGGGHHHH
T ss_pred hcCCCEEEecHHHHHHH
Confidence 99999999887655444
No 77
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=36.67 E-value=2.3e+02 Score=28.97 Aligned_cols=100 Identities=17% Similarity=0.200 Sum_probs=68.7
Q ss_pred CCCCCceEEEEeccCCCCC-CceEecHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCHH--HHHHHHHHHHhCCeEEec
Q 007715 187 RKEDNTVAIVWREDRCDES-AVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVR--AVIIYLAIILAGYVVVSI 263 (592)
Q Consensus 187 ~~~pd~~Al~~~~~~~~~~-~~~~lTy~eL~~~a~~lA~~L~~~v~~gd~V~i~~~~~~e--~v~a~lA~~k~Ga~~vpl 263 (592)
...|+.+|++....|..+. ....+|.+.+...+..++..+. +.++|++...+|-... ++..+++.+..|+..+..
T Consensus 151 ~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~--~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~ 228 (505)
T 3nyq_A 151 GADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQ--WTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHL 228 (505)
T ss_dssp CCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHT--CCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEEC
T ss_pred CCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhC--CCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEEC
Confidence 3457788877654432222 2357899988777665544331 8899999988886433 344578999999998877
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEEecce
Q 007715 264 ADSFAAREIATRLRVSKAKGIFTQDFI 290 (592)
Q Consensus 264 d~~~~~~~l~~~l~~~~~~~iv~~~~~ 290 (592)
. .+..+.+...+ +.++..++..+..
T Consensus 229 ~-~~~~~~~~~~i-~~~~t~~~~~P~~ 253 (505)
T 3nyq_A 229 G-RFSTEGAAREL-NDGATMLFGVPTM 253 (505)
T ss_dssp S-SCCHHHHHHHH-TTTCCEEEECHHH
T ss_pred C-CCChHHHHHHH-hhCCeEEEehHHH
Confidence 4 56777777777 6788888877654
No 78
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=36.38 E-value=10 Score=40.22 Aligned_cols=30 Identities=30% Similarity=0.534 Sum_probs=25.1
Q ss_pred CCCCCeEEEEeCCCCC-CCCcEEEeCCchHH
Q 007715 353 NPVDAVVNILFSSGTT-GEPKAIPWTQLSSI 382 (592)
Q Consensus 353 ~~~~~~a~iiyTSGTT-G~PKgV~~sh~~l~ 382 (592)
..++-+.+..-||||| |++|-+.+|...+-
T Consensus 90 L~~~pi~~F~~SSGTT~g~~K~IP~T~e~l~ 120 (581)
T 4eql_A 90 ISARTITGFLLSSGTSGGAQKMMPWNNKYLD 120 (581)
T ss_dssp TCSSCCCEEEEEEEEETTEEEEEEECHHHHH
T ss_pred cCCCCCCeEEeCCCCCCCCccccccCHHHHH
Confidence 3456677999999999 78999999998764
No 79
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=35.88 E-value=1.1e+02 Score=32.48 Aligned_cols=89 Identities=12% Similarity=0.025 Sum_probs=65.0
Q ss_pred CCCeEEEEeCCCCCCCCcEEEeCCchHHHHH---HHhhhhcCCCCCCEEEEecccchhchhHHHHHHHHcCCEEEEeCCC
Q 007715 355 VDAVVNILFSSGTTGEPKAIPWTQLSSIRCT---AEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS 431 (592)
Q Consensus 355 ~~~~a~iiyTSGTTG~PKgV~~sh~~l~~~~---~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lvl~~~~ 431 (592)
||.+|.+- | +-.+|.+.+...+ .......+++++|++....+-+...- ..+++.+..|+..+.++..
T Consensus 39 pd~~Av~~---~------~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~v-va~lA~l~aG~~~vpl~~~ 108 (617)
T 3rg2_A 39 SDSIAVID---G------ERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELY-ITFFALLKLGVAPVLALFS 108 (617)
T ss_dssp CCSEEEEE---T------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHH-HHHHHHHHHTCEEEEECTT
T ss_pred CCCeEEec---C------CceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHH-HHHHHHHhcCeEEccCCcc
Confidence 67787652 1 2357888775433 33334568999999988887665444 3467899999998888766
Q ss_pred CChhhHHHHHHHhCCcEEEccH
Q 007715 432 PLERSFGKFVQDAGVTVLGTVP 453 (592)
Q Consensus 432 ~~~~~l~~~i~~~~vt~l~~~P 453 (592)
....++..++++.++.++....
T Consensus 109 ~~~~~l~~~l~~~~~~~vl~~~ 130 (617)
T 3rg2_A 109 HQRSELNAYASQIEPALLIADR 130 (617)
T ss_dssp CCHHHHHHHHHHHCCSEEEEET
T ss_pred ccHHHHHHHHhhcCceEEEecc
Confidence 6678899999999999888764
No 80
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=34.82 E-value=1.1e+02 Score=29.54 Aligned_cols=69 Identities=22% Similarity=0.198 Sum_probs=43.5
Q ss_pred cCCCCEEEEEcCCCH------HHHHHHHHHH-HhCCeEEecCCC---------C---CHHHHHHHHHhcCeeEEEEecce
Q 007715 230 FSKGDAIAIDMPMTV------RAVIIYLAII-LAGYVVVSIADS---------F---AAREIATRLRVSKAKGIFTQDFI 290 (592)
Q Consensus 230 v~~gd~V~i~~~~~~------e~v~a~lA~~-k~Ga~~vpld~~---------~---~~~~l~~~l~~~~~~~iv~~~~~ 290 (592)
+++||+|+|++|.+. +.+-.-+..+ ..|.-++.-..- . ..+++..++.|-..++|+|....
T Consensus 9 L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~rGG 88 (327)
T 4h1h_A 9 LKQGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVIGG 88 (327)
T ss_dssp CCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESCCC
T ss_pred CCCCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEcCCc
Confidence 789999999999752 3333333333 346655543221 1 24467778889999999999776
Q ss_pred eccCcccc
Q 007715 291 LRGGRKFP 298 (592)
Q Consensus 291 ~~~~~~~~ 298 (592)
....+.++
T Consensus 89 ~g~~rlL~ 96 (327)
T 4h1h_A 89 FNSNQLLP 96 (327)
T ss_dssp SCGGGGGG
T ss_pred hhHHHHhh
Confidence 54334333
No 81
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=34.57 E-value=1.3e+02 Score=29.05 Aligned_cols=78 Identities=18% Similarity=0.128 Sum_probs=52.4
Q ss_pred cHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCeeEEEEecc
Q 007715 211 TYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDF 289 (592)
Q Consensus 211 Ty~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~v~a~lA~~k~Ga~~vpld~~~~~~~l~~~l~~~~~~~iv~~~~ 289 (592)
||+.- .....+.....+- +++|+.|.|....+-.-...-+++.+.|.-++.+-|...+..-...++..++++++++..
T Consensus 49 SfK~R-~a~~~i~~a~~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 127 (334)
T 3tbh_A 49 SVKDR-LGFAIYDKAEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAA 127 (334)
T ss_dssp BTHHH-HHHHHHHHHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred CcHHH-HHHHHHHHHHHcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 55543 2223444444444 788988756666677777777888888987766655544445566788999999999753
No 82
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=31.50 E-value=2e+02 Score=28.95 Aligned_cols=58 Identities=10% Similarity=0.107 Sum_probs=37.7
Q ss_pred cCCCCEEEEEcCCCHHHHHHHH-HHHHhCCeEEecCCCCCHHHHHHHHHhcCeeEEEEecc
Q 007715 230 FSKGDAIAIDMPMTVRAVIIYL-AIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDF 289 (592)
Q Consensus 230 v~~gd~V~i~~~~~~e~v~a~l-A~~k~Ga~~vpld~~~~~~~l~~~l~~~~~~~iv~~~~ 289 (592)
+++||.|.+.-+.-....-.+- .+.+.|+.++.++.. ..+.++..++. +.++|+.+..
T Consensus 118 ~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~-d~~~l~~ai~~-~t~~v~~e~p 176 (430)
T 3ri6_A 118 ARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVM-DSLAVEHACDE-TTKLLFLETI 176 (430)
T ss_dssp CCTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECTT-CHHHHHHHCCT-TEEEEEEESS
T ss_pred hCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCC-CHHHHHHhhCC-CCeEEEEECC
Confidence 7788888766655554443332 556778887777665 56677776654 6777776643
No 83
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=30.55 E-value=2.9e+02 Score=24.65 Aligned_cols=90 Identities=9% Similarity=-0.110 Sum_probs=52.3
Q ss_pred CEEEEeccc--chhchhHHHHHHH-HcCCEEEEeCCCCChhhHHHHHHHhCCcEEEc------cHHH--HHHHHhcCcCC
Q 007715 398 DVYCWPTNL--GWVMGPVILFSSF-LNGATLALYQGSPLERSFGKFVQDAGVTVLGT------VPSL--VKAWRNTNCLE 466 (592)
Q Consensus 398 d~~l~~~~~--~~~~~~~~~~~~L-~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~------~Ps~--l~~l~~~~~~~ 466 (592)
.+++..++- .|+.+...+-..| .+|..++.......++.+.+.+.++++.++.+ ++++ +..+.+.-...
T Consensus 93 ~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i~~l~~~ 172 (215)
T 3ezx_A 93 GLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLMDRLNEE 172 (215)
T ss_dssp CEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHHHHHHHT
T ss_pred CeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHHHHHHHc
Confidence 455544433 3777764433333 46667666555567889999999999997777 2322 22222221111
Q ss_pred CCCC-ccccEEEEecCCCChhhHHH
Q 007715 467 GLDW-TKIRSFASTGETSNVDDDLW 490 (592)
Q Consensus 467 ~~~l-~sLr~v~~gGe~l~~~~~~~ 490 (592)
. + ..++ +++||.+++++.++.
T Consensus 173 ~--~~~~v~-v~vGG~~~~~~~a~~ 194 (215)
T 3ezx_A 173 K--LRDSVK-CMFGGAPVSDKWIEE 194 (215)
T ss_dssp T--CGGGSE-EEEESSSCCHHHHHH
T ss_pred C--CCCCCE-EEEECCCCCHHHHHH
Confidence 1 1 1344 788999998765543
No 84
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=29.78 E-value=1.4e+02 Score=29.26 Aligned_cols=63 Identities=16% Similarity=0.033 Sum_probs=42.7
Q ss_pred HHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecCCC-----CCHHHHHHHHHhcC--eeEEEEec
Q 007715 223 ANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADS-----FAAREIATRLRVSK--AKGIFTQD 288 (592)
Q Consensus 223 A~~L~~~-v~~gd~V~i~~~~~~e~v~a~lA~~k~Ga~~vpld~~-----~~~~~l~~~l~~~~--~~~iv~~~ 288 (592)
...|... +++||.|.+-.+....+. -++...|+.++.++.+ ...+.++..+...+ .++|+...
T Consensus 67 ~~al~~l~~~~Gd~Vi~~~~~~~~~~---~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~~~~ 137 (377)
T 3ju7_A 67 MAAIQLKKRKKGKYALMPSFTFPATP---LAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVVPYA 137 (377)
T ss_dssp HHHHHHHSCTTCCEEEEESSSCTHHH---HHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEECCBC
T ss_pred HHHHHHcCCCCcCEEEECCCCcHHHH---HHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEEEEC
Confidence 3345666 899999998877666543 3466789876655432 46888888775444 77777543
No 85
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=28.17 E-value=2.3e+02 Score=27.19 Aligned_cols=59 Identities=7% Similarity=-0.048 Sum_probs=40.2
Q ss_pred cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecCC--C--CCHHHHHHHHHhcCeeEEEEecc
Q 007715 230 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIAD--S--FAAREIATRLRVSKAKGIFTQDF 289 (592)
Q Consensus 230 v~~gd~V~i~~~~~~e~v~a~lA~~k~Ga~~vpld~--~--~~~~~l~~~l~~~~~~~iv~~~~ 289 (592)
.++||.|.+..+..+.+.....++...|+.++.++. + ...+.++..++. ++++|+....
T Consensus 86 ~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~ 148 (384)
T 1eg5_A 86 EKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVDE-DTFLVSIMAA 148 (384)
T ss_dssp TTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCCT-TEEEEEEESB
T ss_pred cCCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccCCCCccCHHHHHHHhCC-CCeEEEEECC
Confidence 478999988777666655555555667887666543 3 457888887764 6777776643
No 86
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=28.00 E-value=2.2e+02 Score=27.51 Aligned_cols=57 Identities=18% Similarity=0.100 Sum_probs=41.7
Q ss_pred cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecCCC-------CCHHHHHHHHHhcCeeEEEEecc
Q 007715 230 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADS-------FAAREIATRLRVSKAKGIFTQDF 289 (592)
Q Consensus 230 v~~gd~V~i~~~~~~e~v~a~lA~~k~Ga~~vpld~~-------~~~~~l~~~l~~~~~~~iv~~~~ 289 (592)
+++||.|.+.-+....+. .++...|+.++.++.. ...+.++..+++.++++|+....
T Consensus 106 ~~~gd~vl~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~~p 169 (391)
T 3dzz_A 106 TSPGDQILVQEPVYNMFY---SVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFCNP 169 (391)
T ss_dssp SCTTCEEEECSSCCHHHH---HHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEESS
T ss_pred CCCCCeEEECCCCcHHHH---HHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEEECC
Confidence 689999988777666543 3456788887776553 67899999998778888776543
No 87
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=27.65 E-value=2.1e+02 Score=27.79 Aligned_cols=70 Identities=17% Similarity=0.221 Sum_probs=45.1
Q ss_pred cCCCCEEEEEcCCCH------HHHHHHHHHHH-hCCeEEecCCC---------CC---HHHHHHHHHhcCeeEEEEecce
Q 007715 230 FSKGDAIAIDMPMTV------RAVIIYLAIIL-AGYVVVSIADS---------FA---AREIATRLRVSKAKGIFTQDFI 290 (592)
Q Consensus 230 v~~gd~V~i~~~~~~------e~v~a~lA~~k-~Ga~~vpld~~---------~~---~~~l~~~l~~~~~~~iv~~~~~ 290 (592)
+++||+|+|++|.+. +.+-.-+..++ .|.-++.-... .+ .+++..++.|-++++|+|....
T Consensus 10 L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~rGG 89 (336)
T 3sr3_A 10 LKYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMSTIGG 89 (336)
T ss_dssp CCTTCEEEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEESCCC
T ss_pred CCCCCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEEcccccccccccCCCHHHHHHHHHHHhhCCCCCEEEEcccc
Confidence 899999999999884 23333344444 57665542211 12 3456667888999999999876
Q ss_pred eccCccccc
Q 007715 291 LRGGRKFPL 299 (592)
Q Consensus 291 ~~~~~~~~~ 299 (592)
....+.++.
T Consensus 90 ~g~~rlL~~ 98 (336)
T 3sr3_A 90 MNSNSLLPY 98 (336)
T ss_dssp SCGGGGGGG
T ss_pred ccHHHHhhh
Confidence 544444443
No 88
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=27.64 E-value=2.2e+02 Score=27.61 Aligned_cols=70 Identities=16% Similarity=0.163 Sum_probs=45.3
Q ss_pred cCCCCEEEEEcCCCH------HHHHHHHHHHH-hCCeEEecCCC---------CC---HHHHHHHHHhcCeeEEEEecce
Q 007715 230 FSKGDAIAIDMPMTV------RAVIIYLAIIL-AGYVVVSIADS---------FA---AREIATRLRVSKAKGIFTQDFI 290 (592)
Q Consensus 230 v~~gd~V~i~~~~~~------e~v~a~lA~~k-~Ga~~vpld~~---------~~---~~~l~~~l~~~~~~~iv~~~~~ 290 (592)
+++||+|+|++|.+. +.+-.-+..++ .|.-++.-... .+ .+++..++.|-.+++|+|....
T Consensus 9 L~~GD~I~ivaPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~rGG 88 (331)
T 4e5s_A 9 LKKGDEIRVISPSCSLSIVSTENRRLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVKAILTTLGG 88 (331)
T ss_dssp CCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESCCC
T ss_pred CCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcccc
Confidence 799999999998875 33434444454 56665543211 12 3456667888999999999876
Q ss_pred eccCccccc
Q 007715 291 LRGGRKFPL 299 (592)
Q Consensus 291 ~~~~~~~~~ 299 (592)
....+.++.
T Consensus 89 ~g~~rlL~~ 97 (331)
T 4e5s_A 89 YNSNGLLKY 97 (331)
T ss_dssp SCGGGGGGG
T ss_pred ccHHHHHhh
Confidence 544444443
No 89
>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}
Probab=27.25 E-value=99 Score=25.79 Aligned_cols=52 Identities=13% Similarity=-0.026 Sum_probs=39.0
Q ss_pred CCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCeeEE
Q 007715 232 KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGI 284 (592)
Q Consensus 232 ~gd~V~i~~~~~~e~v~a~lA~~k~Ga~~vpld~~~~~~~l~~~l~~~~~~~i 284 (592)
+=|.|.++.|. ....-++..|.++|.-.+.+++....+++...++..+.+++
T Consensus 70 ~~Dlvii~vp~-~~v~~v~~~~~~~g~~~i~i~~~~~~~~l~~~a~~~Gi~~i 121 (145)
T 2duw_A 70 KVDMVDVFRNS-EAAWGVAQEAIAIGAKTLWLQLGVINEQAAVLAREAGLSVV 121 (145)
T ss_dssp CCSEEECCSCS-THHHHHHHHHHHHTCCEEECCTTCCCHHHHHHHHTTTCEEE
T ss_pred CCCEEEEEeCH-HHHHHHHHHHHHcCCCEEEEcCChHHHHHHHHHHHcCCEEE
Confidence 34788888884 55555555677888777777887778889989888888765
No 90
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=27.00 E-value=1.3e+02 Score=29.65 Aligned_cols=70 Identities=14% Similarity=0.086 Sum_probs=45.2
Q ss_pred cCCCCEEEEEcCCCH------HHHHHHHHHHH-hCCeEEecCCC---------CC---HHHHHHHHHhcCeeEEEEecce
Q 007715 230 FSKGDAIAIDMPMTV------RAVIIYLAIIL-AGYVVVSIADS---------FA---AREIATRLRVSKAKGIFTQDFI 290 (592)
Q Consensus 230 v~~gd~V~i~~~~~~------e~v~a~lA~~k-~Ga~~vpld~~---------~~---~~~l~~~l~~~~~~~iv~~~~~ 290 (592)
+++||+|+|++|.+. +.+-.-+..++ .|.-++.-... .+ .+++..++.|-++++|+|....
T Consensus 40 Lk~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~~rGG 119 (371)
T 3tla_A 40 LAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMSTIGG 119 (371)
T ss_dssp CCTTCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEESCCC
T ss_pred CCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcccc
Confidence 899999999999874 23333344444 57665543221 12 3456667888899999999876
Q ss_pred eccCccccc
Q 007715 291 LRGGRKFPL 299 (592)
Q Consensus 291 ~~~~~~~~~ 299 (592)
....+.++.
T Consensus 120 yga~rlLp~ 128 (371)
T 3tla_A 120 DNSNSLLPF 128 (371)
T ss_dssp SCGGGGGGG
T ss_pred ccHHHHHhh
Confidence 544444444
No 91
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=25.81 E-value=4.1e+02 Score=25.89 Aligned_cols=72 Identities=8% Similarity=0.013 Sum_probs=48.9
Q ss_pred cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCeeEEEEecceeccCccccchhhHhhc
Q 007715 230 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGA 306 (592)
Q Consensus 230 v~~gd~V~i~~~~~~e~v~a~lA~~k~Ga~~vpld~~~~~~~l~~~l~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~ 306 (592)
+++||.|.+--+...... -++...|+..++++. ...+.++..+++.++++|+++.-....+...+ ++++.+.
T Consensus 140 ~~~gd~Vl~~~~~~~~~~---~~~~~~g~~~~~~~~-~d~~~le~~l~~~~~~~vi~~~~~nptG~~~~-l~~l~~l 211 (409)
T 3kki_A 140 CQPNTNVYIDFFAHMSLW---EGARYANAQAHPFMH-NNCDHLRMLIQRHGPGIIVVDSIYSTLGTIAP-LAELVNI 211 (409)
T ss_dssp CCTTCEEEEETTSCHHHH---HHHHHTTCEEEEECT-TCHHHHHHHHHHHCSCEEEEESBCTTTCCBCC-HHHHHHH
T ss_pred cCCCCEEEECCCcCHHHH---HHHHHcCCeEEEecC-CCHHHHHHHHHhcCCeEEEECCCCCCCCCcCC-HHHHHHH
Confidence 789999998776655443 355677999888754 56888999998777788888765433333333 4444443
No 92
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=25.63 E-value=1.9e+02 Score=28.09 Aligned_cols=94 Identities=6% Similarity=0.038 Sum_probs=59.9
Q ss_pred CCceEEEEeccCCCCC-CceEecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHH-HHHHHHHHHhCCeEEecCCC
Q 007715 190 DNTVAIVWREDRCDES-AVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRA-VIIYLAIILAGYVVVSIADS 266 (592)
Q Consensus 190 pd~~Al~~~~~~~~~~-~~~~lTy~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~-v~a~lA~~k~Ga~~vpld~~ 266 (592)
.|.+|++....|..+. ....+|.+.|...+..++. .. ++++|++..++|-+..+ +..++..+..|+..+..++.
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~ 112 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGK---ALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPT 112 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCC
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHH---HhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCcc
Confidence 4667766543322222 2257899988766554443 34 89999999999876432 34456667778887776654
Q ss_pred CCHHHHHHHHHhcCeeEEEEecc
Q 007715 267 FAAREIATRLRVSKAKGIFTQDF 289 (592)
Q Consensus 267 ~~~~~l~~~l~~~~~~~iv~~~~ 289 (592)
.. ....+++.++..+...+.
T Consensus 113 ~~---~~~~i~~~~~t~~~~~P~ 132 (358)
T 4gs5_A 113 AN---PLAGLDHADFDFVAMVPM 132 (358)
T ss_dssp SC---TTTTCSSCCCSEEEECHH
T ss_pred cc---HHHHHHHhCCeEEEcChH
Confidence 32 234577788888877664
No 93
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=25.08 E-value=3.7e+02 Score=25.52 Aligned_cols=57 Identities=11% Similarity=0.062 Sum_probs=40.5
Q ss_pred cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecC--CC----CCHHHHHHHHHh----cCeeEEEEecc
Q 007715 230 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA--DS----FAAREIATRLRV----SKAKGIFTQDF 289 (592)
Q Consensus 230 v~~gd~V~i~~~~~~e~v~a~lA~~k~Ga~~vpld--~~----~~~~~l~~~l~~----~~~~~iv~~~~ 289 (592)
+++||.|.+.-+.......+ +...|+.++.++ .+ ...+.++..+++ .++++|+....
T Consensus 90 ~~~gd~vl~~~~~~~~~~~~---~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~~~ 156 (371)
T 2e7j_A 90 AKKDAWVVMDENCHYSSYVA---AERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYP 156 (371)
T ss_dssp CCTTCEEEEETTCCHHHHHH---HHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEESS
T ss_pred hCCCCEEEEccCcchHHHHH---HHHcCCeEEEeecccCCCCCcCHHHHHHHHHhhcccCCeEEEEEECC
Confidence 67999998887777665544 567888777665 32 367888888875 36777776654
No 94
>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*
Probab=22.86 E-value=1.3e+02 Score=24.87 Aligned_cols=52 Identities=13% Similarity=-0.021 Sum_probs=39.1
Q ss_pred CCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCeeEE
Q 007715 232 KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGI 284 (592)
Q Consensus 232 ~gd~V~i~~~~~~e~v~a~lA~~k~Ga~~vpld~~~~~~~l~~~l~~~~~~~i 284 (592)
+=|.|.|+.|. ....-++-.|..+|.-.+.+.+....+++....++.+.++|
T Consensus 77 ~vDlvvi~vp~-~~~~~vv~~~~~~gi~~i~~~~g~~~~~l~~~a~~~Gi~vv 128 (144)
T 2d59_A 77 KIEVVDLFVKP-KLTMEYVEQAIKKGAKVVWFQYNTYNREASKKADEAGLIIV 128 (144)
T ss_dssp CCSEEEECSCH-HHHHHHHHHHHHHTCSEEEECTTCCCHHHHHHHHHTTCEEE
T ss_pred CCCEEEEEeCH-HHHHHHHHHHHHcCCCEEEECCCchHHHHHHHHHHcCCEEE
Confidence 34777777776 44455555788888877778888888899999999988854
No 95
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=22.74 E-value=3.8e+02 Score=25.94 Aligned_cols=57 Identities=18% Similarity=0.141 Sum_probs=42.8
Q ss_pred cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhc---CeeEEEEecce
Q 007715 230 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVS---KAKGIFTQDFI 290 (592)
Q Consensus 230 v~~gd~V~i~~~~~~e~v~a~lA~~k~Ga~~vpld~~~~~~~l~~~l~~~---~~~~iv~~~~~ 290 (592)
.++||.|.+.-+....+.- ++...|+.+++++. ...+.++..++.. ++++|++....
T Consensus 124 ~~~gd~V~~~~p~~~~~~~---~~~~~g~~~~~v~~-~d~~~l~~~l~~~~~~~~~~v~~~~~~ 183 (398)
T 3a2b_A 124 MGRNDYILLDERDHASIID---GSRLSFSKVIKYGH-NNMEDLRAKLSRLPEDSAKLICTDGIF 183 (398)
T ss_dssp SCTTCEEEEETTCCHHHHH---HHHHSSSEEEEECT-TCHHHHHHHHHTSCSSSCEEEEEESBC
T ss_pred hCCCCEEEECCccCHHHHH---HHHHcCCceEEeCC-CCHHHHHHHHHhhccCCceEEEEeCCC
Confidence 7899999998887765543 45567998888765 5678899888875 67888876643
No 96
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=22.29 E-value=1.5e+02 Score=24.45 Aligned_cols=52 Identities=15% Similarity=0.125 Sum_probs=38.3
Q ss_pred CCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCeeEE
Q 007715 232 KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGI 284 (592)
Q Consensus 232 ~gd~V~i~~~~~~e~v~a~lA~~k~Ga~~vpld~~~~~~~l~~~l~~~~~~~i 284 (592)
+=|.|.++.| .....-++..|..+|.-.+.+++..-.+++....++.+.++|
T Consensus 69 ~vDlvii~vp-~~~v~~v~~~~~~~g~~~i~~~~~~~~~~l~~~a~~~Gi~~i 120 (138)
T 1y81_A 69 DVDVIVFVVP-PKVGLQVAKEAVEAGFKKLWFQPGAESEEIRRFLEKAGVEYS 120 (138)
T ss_dssp TCCEEEECSC-HHHHHHHHHHHHHTTCCEEEECTTSCCHHHHHHHHHHTCEEE
T ss_pred CCCEEEEEeC-HHHHHHHHHHHHHcCCCEEEEcCccHHHHHHHHHHHCCCEEE
Confidence 4578888888 355555555777888877777777777888888888888754
No 97
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=22.01 E-value=2.3e+02 Score=27.10 Aligned_cols=59 Identities=17% Similarity=0.072 Sum_probs=40.8
Q ss_pred cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecCC--C--CCHHHHHHHHHhcCeeEEEEecc
Q 007715 230 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIAD--S--FAAREIATRLRVSKAKGIFTQDF 289 (592)
Q Consensus 230 v~~gd~V~i~~~~~~e~v~a~lA~~k~Ga~~vpld~--~--~~~~~l~~~l~~~~~~~iv~~~~ 289 (592)
.++||.|.+.-+..+.+.-++..+-+.|+.++.++. + ...+.++..++. ++++|+....
T Consensus 85 ~~~gd~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~ 147 (382)
T 4hvk_A 85 ARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLRD-DTILVSVQHA 147 (382)
T ss_dssp GGGCCEEEEETTCCHHHHHHHHHHHHTTCEEEEECBCTTSCBCHHHHHHHCCT-TEEEEECCSB
T ss_pred cCCCCEEEECCCCcHHHHHHHHHHHhcCCEEEEeccCCCCCcCHHHHHHHhcc-CceEEEEECC
Confidence 479999999888777776665555567877665543 3 357788877754 5677776654
No 98
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=21.77 E-value=2.1e+02 Score=27.55 Aligned_cols=59 Identities=17% Similarity=0.091 Sum_probs=37.5
Q ss_pred cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecC--CC--CCHHHHHHHHHhcCeeEEEEecc
Q 007715 230 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA--DS--FAAREIATRLRVSKAKGIFTQDF 289 (592)
Q Consensus 230 v~~gd~V~i~~~~~~e~v~a~lA~~k~Ga~~vpld--~~--~~~~~l~~~l~~~~~~~iv~~~~ 289 (592)
.++||.|.+.-+..+.+.-+...+.+.|+.++.++ ++ ...+.++..++. ++++|+....
T Consensus 85 ~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~ 147 (382)
T 4eb5_A 85 ARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLRD-DTILVSVQHA 147 (382)
T ss_dssp GGGCCEEEEETTCCHHHHHHHHHHTTTTCEEEEECBCTTSCBCHHHHHHHCCT-TEEEEECCSB
T ss_pred cCCCCEEEECCCcchHHHHHHHHHHhCCcEEEEeccCCCCccCHHHHHHHhcC-CCeEEEEecc
Confidence 46899998887776655444433334687665554 33 357788877754 5777776543
No 99
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=21.46 E-value=3.3e+02 Score=26.05 Aligned_cols=75 Identities=13% Similarity=0.035 Sum_probs=44.0
Q ss_pred cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEEecC--CC--CCHHHHHHHHHhcCeeEEEEecceeccCccccchhhHhh
Q 007715 230 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA--DS--FAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLG 305 (592)
Q Consensus 230 v~~gd~V~i~~~~~~e~v~a~lA~~k~Ga~~vpld--~~--~~~~~l~~~l~~~~~~~iv~~~~~~~~~~~~~~~~~~~~ 305 (592)
+++||.|.+.-+..... ...-.+...|+.++.++ .. ...+.++..++..++++|+........+...+ .+++.+
T Consensus 74 ~~~gd~vi~~~~~~~~~-~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~-l~~i~~ 151 (384)
T 3zrp_A 74 LKPNDKILVVSNGVFGD-RWEQIFKRYPVNVKVLRPSPGDYVKPGEVEEEVRKSEYKLVALTHVETSTGVREP-VKDVIN 151 (384)
T ss_dssp CCTTCEEEEECSSHHHH-HHHHHHTTSSCEEEEECCSTTCCCCHHHHHHHHHHSCEEEEEEESEETTTTEECC-HHHHHH
T ss_pred cCCCCEEEEecCCcchH-HHHHHHHHcCCcEEEecCCCCCCCCHHHHHHHHHhCCCcEEEEeCCCCCCceECc-HHHHHH
Confidence 88999988876543221 11122235677665554 33 46889999998877888887754332333333 344444
Q ss_pred c
Q 007715 306 A 306 (592)
Q Consensus 306 ~ 306 (592)
.
T Consensus 152 l 152 (384)
T 3zrp_A 152 K 152 (384)
T ss_dssp H
T ss_pred H
Confidence 3
No 100
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Probab=20.83 E-value=3.2e+02 Score=26.40 Aligned_cols=78 Identities=17% Similarity=0.194 Sum_probs=48.4
Q ss_pred EecHHHHHHHH--HHHH-HHHHh-h-cCCCCEEEEEcC-CCHHHHHHHHHHHHhCCe-EEecCCCCCHHHHHHHHHhcCe
Q 007715 209 LMTYKELREQV--MLVA-NALDT-M-FSKGDAIAIDMP-MTVRAVIIYLAIILAGYV-VVSIADSFAAREIATRLRVSKA 281 (592)
Q Consensus 209 ~lTy~eL~~~a--~~lA-~~L~~-~-v~~gd~V~i~~~-~~~e~v~a~lA~~k~Ga~-~vpld~~~~~~~l~~~l~~~~~ 281 (592)
.+++.+..... -..| +.|.. . +++|++|.|... -+.-..++.+|- ..|+. ++..+..-..++....++..++
T Consensus 139 ~l~~~~Aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak-~~Ga~vi~~~~~~~~~~~~~~~~~~lGa 217 (357)
T 1zsy_A 139 DIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAA-ALGLRTINVVRDRPDIQKLSDRLKSLGA 217 (357)
T ss_dssp SSCHHHHHHTTSHHHHHHHHHHHSSCCCTTCEEEESSTTSHHHHHHHHHHH-HHTCEEEEEECCCSCHHHHHHHHHHTTC
T ss_pred CCCHHHHhhhcccHHHHHHHHHHHhccCCCCEEEEeCCcCHHHHHHHHHHH-HcCCEEEEEecCccchHHHHHHHHhcCC
Confidence 47887754321 1122 24444 4 999999999987 556666666665 46884 4455554444445556778888
Q ss_pred eEEEEe
Q 007715 282 KGIFTQ 287 (592)
Q Consensus 282 ~~iv~~ 287 (592)
..++..
T Consensus 218 ~~vi~~ 223 (357)
T 1zsy_A 218 EHVITE 223 (357)
T ss_dssp SEEEEH
T ss_pred cEEEec
Confidence 887753
No 101
>3acd_A Hypoxanthine-guanine phosphoribosyltransferase; rossmann fold, structural genomics, NPPSFA; HET: IMP; 1.89A {Thermus thermophilus} PDB: 3acc_A* 3acb_A*
Probab=20.80 E-value=1.2e+02 Score=26.47 Aligned_cols=42 Identities=7% Similarity=0.000 Sum_probs=31.8
Q ss_pred EecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHH
Q 007715 209 LMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYL 251 (592)
Q Consensus 209 ~lTy~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~~~e~v~a~l 251 (592)
-+|..|+.+++.++|+.+.+. -+ .+.|.|+..++--.+++.|
T Consensus 13 lis~~~I~~~i~rlA~eI~e~~~~-~~~vlvgIl~Gg~~fa~~L 55 (181)
T 3acd_A 13 QISAEAIKKRVEELGGEIARDYQG-KTPHLICVLNGAFIFMADL 55 (181)
T ss_dssp CBCHHHHHHHHHHHHHHHHHHTTT-CCCEEEEEETTTHHHHHHH
T ss_pred EeCHHHHHHHHHHHHHHHHHHhCC-CCcEEEEEecCcHHHHHHH
Confidence 689999999999999999888 55 4456666666665555544
No 102
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=20.12 E-value=5.6e+02 Score=24.24 Aligned_cols=56 Identities=11% Similarity=0.153 Sum_probs=38.5
Q ss_pred cCCCCEEEEEcCCCHHHHHHHHHHHHhCCeEE--ecCCC--CCHHHHHHHHHhcCeeEEEEec
Q 007715 230 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVV--SIADS--FAAREIATRLRVSKAKGIFTQD 288 (592)
Q Consensus 230 v~~gd~V~i~~~~~~e~v~a~lA~~k~Ga~~v--pld~~--~~~~~l~~~l~~~~~~~iv~~~ 288 (592)
+++||.|.+.-+....+.- ++...|+.++ |++++ ...+.++..++..++++|+...
T Consensus 106 ~~~gd~Vl~~~~~~~~~~~---~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~ 165 (367)
T 3euc_A 106 ARPGAKVMAPVPGFVMYAM---SAQFAGLEFVGVPLRADFTLDRGAMLAAMAEHQPAIVYLAY 165 (367)
T ss_dssp CCTTCEEEEEESCSCCSCH---HHHTTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEES
T ss_pred cCCCCEEEEcCCCHHHHHH---HHHHcCCeEEEecCCCCCCCCHHHHHHHhhccCCCEEEEcC
Confidence 7899999988765544332 3456787655 44443 4678999988876778887754
Done!