Query 007716
Match_columns 592
No_of_seqs 561 out of 4291
Neff 8.5
Searched_HMMs 46136
Date Thu Mar 28 14:22:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007716.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007716hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2415 Electron transfer flav 100.0 3E-124 7E-129 926.0 36.8 491 100-592 69-570 (621)
2 COG0644 FixC Dehydrogenases (f 100.0 3.2E-44 7E-49 382.3 35.5 392 106-554 2-396 (396)
3 PRK10015 oxidoreductase; Provi 100.0 1E-41 2.2E-46 365.7 36.2 367 107-505 5-395 (429)
4 PF05187 ETF_QO: Electron tran 100.0 6.9E-45 1.5E-49 304.2 -0.4 105 488-592 1-105 (110)
5 PRK10157 putative oxidoreducta 100.0 1.9E-39 4E-44 348.6 35.7 366 106-504 4-393 (428)
6 PLN00093 geranylgeranyl diphos 100.0 2.3E-31 5E-36 286.2 35.6 337 104-486 36-385 (450)
7 TIGR02028 ChlP geranylgeranyl 100.0 2.2E-30 4.9E-35 275.9 35.4 332 108-486 1-346 (398)
8 TIGR02023 BchP-ChlP geranylger 100.0 3.6E-30 7.7E-35 274.0 34.1 325 108-485 1-335 (388)
9 TIGR02032 GG-red-SF geranylger 100.0 1.4E-29 3E-34 258.9 31.4 293 108-449 1-295 (295)
10 COG0654 UbiH 2-polyprenyl-6-me 100.0 6.5E-29 1.4E-33 264.1 32.7 335 107-486 2-351 (387)
11 PRK07045 putative monooxygenas 100.0 1.3E-28 2.8E-33 262.3 33.2 341 106-486 4-359 (388)
12 PF01494 FAD_binding_3: FAD bi 100.0 5.8E-30 1.3E-34 268.2 22.6 332 107-476 1-354 (356)
13 PRK08013 oxidoreductase; Provi 100.0 1E-28 2.3E-33 263.9 30.9 336 107-486 3-358 (400)
14 PRK06617 2-octaprenyl-6-methox 100.0 1.6E-28 3.4E-33 260.1 31.2 327 108-486 2-339 (374)
15 PRK06753 hypothetical protein; 100.0 1.6E-28 3.5E-33 260.2 30.1 331 108-486 1-339 (373)
16 PRK07538 hypothetical protein; 100.0 2.5E-28 5.4E-33 262.1 31.7 334 108-481 1-362 (413)
17 PRK08244 hypothetical protein; 100.0 3.4E-28 7.4E-33 266.8 33.1 337 106-485 1-344 (493)
18 PRK08243 4-hydroxybenzoate 3-m 100.0 2.9E-28 6.3E-33 259.8 31.1 340 106-486 1-351 (392)
19 TIGR01988 Ubi-OHases Ubiquinon 100.0 5.8E-28 1.2E-32 256.8 31.6 332 109-486 1-352 (385)
20 PRK08163 salicylate hydroxylas 100.0 5.1E-28 1.1E-32 258.4 30.6 336 106-486 3-357 (396)
21 PRK05714 2-octaprenyl-3-methyl 100.0 4.1E-28 8.8E-33 259.9 29.9 334 106-486 1-361 (405)
22 PRK07333 2-octaprenyl-6-methox 100.0 2.4E-28 5.3E-33 261.5 27.6 337 108-486 2-356 (403)
23 PRK07364 2-octaprenyl-6-methox 100.0 5.3E-28 1.2E-32 259.9 30.3 340 106-486 17-370 (415)
24 PRK06185 hypothetical protein; 100.0 1.2E-27 2.6E-32 256.5 32.1 339 105-485 4-357 (407)
25 PRK08773 2-octaprenyl-3-methyl 100.0 7.8E-28 1.7E-32 256.6 30.0 334 106-485 5-357 (392)
26 PRK06847 hypothetical protein; 100.0 1.6E-27 3.4E-32 252.7 32.0 328 107-485 4-351 (375)
27 PRK06183 mhpA 3-(3-hydroxyphen 100.0 1.3E-27 2.9E-32 264.6 31.6 340 106-486 9-359 (538)
28 PRK07588 hypothetical protein; 100.0 2.2E-27 4.9E-32 253.0 31.0 335 108-486 1-350 (391)
29 PRK09126 hypothetical protein; 100.0 7.3E-28 1.6E-32 256.8 27.1 336 106-486 2-356 (392)
30 PRK08132 FAD-dependent oxidore 100.0 2.1E-27 4.5E-32 263.7 31.7 340 104-485 20-371 (547)
31 TIGR01984 UbiH 2-polyprenyl-6- 100.0 1.2E-27 2.5E-32 254.4 28.2 331 109-486 1-349 (382)
32 TIGR01989 COQ6 Ubiquinone bios 100.0 2.2E-27 4.7E-32 256.4 30.1 341 108-486 1-409 (437)
33 TIGR02360 pbenz_hydroxyl 4-hyd 100.0 2.1E-27 4.5E-32 252.8 29.3 343 106-486 1-351 (390)
34 PRK05868 hypothetical protein; 100.0 3E-27 6.5E-32 249.9 30.1 333 108-486 2-353 (372)
35 PRK08294 phenol 2-monooxygenas 100.0 6.8E-27 1.5E-31 261.6 34.4 349 106-486 31-413 (634)
36 PRK06184 hypothetical protein; 100.0 9.3E-27 2E-31 256.0 32.9 337 107-485 3-352 (502)
37 PRK08850 2-octaprenyl-6-methox 100.0 6.8E-27 1.5E-31 250.4 30.8 334 107-486 4-358 (405)
38 PRK06996 hypothetical protein; 100.0 2.1E-26 4.6E-31 245.9 33.1 333 105-486 9-361 (398)
39 PLN02985 squalene monooxygenas 100.0 3.8E-26 8.3E-31 249.6 35.5 340 104-486 40-402 (514)
40 PRK06475 salicylate hydroxylas 100.0 1.5E-26 3.3E-31 247.2 31.4 329 108-479 3-354 (400)
41 PRK07608 ubiquinone biosynthes 100.0 9.7E-27 2.1E-31 247.8 29.4 336 106-486 4-355 (388)
42 PRK07494 2-octaprenyl-6-methox 100.0 6.6E-27 1.4E-31 249.1 27.4 332 106-485 6-352 (388)
43 PRK07190 hypothetical protein; 100.0 1.7E-26 3.6E-31 251.5 31.0 329 106-485 4-347 (487)
44 PRK06834 hypothetical protein; 100.0 3E-26 6.4E-31 249.8 32.7 320 107-482 3-334 (488)
45 PRK08849 2-octaprenyl-3-methyl 100.0 2E-26 4.4E-31 244.9 30.5 334 107-486 3-350 (384)
46 PTZ00367 squalene epoxidase; P 100.0 3.5E-26 7.5E-31 251.1 32.5 351 104-487 30-423 (567)
47 PRK08020 ubiF 2-octaprenyl-3-m 100.0 1.3E-26 2.8E-31 247.1 27.6 335 106-485 4-356 (391)
48 TIGR03219 salicylate_mono sali 100.0 3.1E-26 6.8E-31 246.0 29.4 337 109-486 2-374 (414)
49 PRK07236 hypothetical protein; 100.0 5.2E-26 1.1E-30 242.0 30.6 330 106-485 5-375 (386)
50 PRK06126 hypothetical protein; 100.0 9.8E-26 2.1E-30 250.4 33.1 339 105-485 5-375 (545)
51 PRK05732 2-octaprenyl-6-methox 99.9 1.5E-25 3.3E-30 239.2 31.4 337 106-486 2-358 (395)
52 PRK11445 putative oxidoreducta 99.9 5E-24 1.1E-28 223.7 32.9 305 108-468 2-315 (351)
53 PLN02927 antheraxanthin epoxid 99.9 8.2E-24 1.8E-28 233.5 31.9 332 104-485 78-446 (668)
54 KOG2614 Kynurenine 3-monooxyge 99.9 1.2E-24 2.6E-29 220.4 16.4 301 107-455 2-328 (420)
55 TIGR01790 carotene-cycl lycope 99.9 2.6E-22 5.6E-27 213.9 35.1 305 109-469 1-318 (388)
56 PLN02697 lycopene epsilon cycl 99.9 2.1E-21 4.6E-26 211.2 36.3 319 106-484 107-453 (529)
57 PRK08255 salicylyl-CoA 5-hydro 99.9 2.4E-22 5.1E-27 230.1 21.0 319 109-485 2-339 (765)
58 PLN02463 lycopene beta cyclase 99.9 4.9E-20 1.1E-24 197.7 32.2 292 106-455 27-334 (447)
59 PF04820 Trp_halogenase: Trypt 99.9 2.2E-20 4.7E-25 201.5 22.9 222 205-469 147-370 (454)
60 KOG1298 Squalene monooxygenase 99.9 5.8E-20 1.3E-24 182.8 20.7 303 104-451 42-362 (509)
61 TIGR01789 lycopene_cycl lycope 99.8 5.8E-17 1.2E-21 170.9 28.4 295 109-466 1-303 (370)
62 PF05834 Lycopene_cycl: Lycope 99.8 8.8E-17 1.9E-21 170.1 28.9 278 109-451 1-290 (374)
63 KOG3855 Monooxygenase involved 99.7 4E-16 8.8E-21 157.3 20.2 332 106-467 35-428 (481)
64 PRK04176 ribulose-1,5-biphosph 99.7 2.9E-16 6.2E-21 156.8 17.7 157 104-295 22-183 (257)
65 TIGR00292 thiazole biosynthesi 99.7 4.5E-16 9.8E-21 154.9 17.8 159 105-298 19-183 (254)
66 PF01946 Thi4: Thi4 family; PD 99.7 5.6E-16 1.2E-20 145.4 12.3 157 104-295 14-175 (230)
67 COG1635 THI4 Ribulose 1,5-bisp 99.6 3.4E-15 7.3E-20 139.1 14.7 153 105-292 28-185 (262)
68 PLN02661 Putative thiazole syn 99.5 5E-13 1.1E-17 136.7 19.8 153 104-290 89-249 (357)
69 PF01266 DAO: FAD dependent ox 99.5 7.1E-13 1.5E-17 138.8 21.1 161 109-298 1-213 (358)
70 PRK00711 D-amino acid dehydrog 99.5 4.1E-12 8.9E-17 136.7 26.0 71 208-298 197-267 (416)
71 COG2081 Predicted flavoprotein 99.5 1.8E-13 3.9E-18 139.3 13.5 163 106-299 2-188 (408)
72 TIGR01373 soxB sarcosine oxida 99.5 1.3E-11 2.8E-16 132.5 27.1 72 208-298 179-250 (407)
73 PF03486 HI0933_like: HI0933-l 99.4 7E-13 1.5E-17 140.6 12.5 158 108-299 1-187 (409)
74 PRK12409 D-amino acid dehydrog 99.4 3.3E-11 7.2E-16 129.4 25.5 74 209-297 194-267 (410)
75 TIGR01377 soxA_mon sarcosine o 99.4 8.5E-11 1.8E-15 124.8 26.3 72 206-298 139-210 (380)
76 COG0579 Predicted dehydrogenas 99.4 1.7E-11 3.6E-16 129.0 19.9 171 106-299 2-222 (429)
77 TIGR03329 Phn_aa_oxid putative 99.4 1.4E-11 3.1E-16 134.1 20.3 62 206-286 177-238 (460)
78 PRK11101 glpA sn-glycerol-3-ph 99.4 9.7E-11 2.1E-15 129.9 26.9 172 106-298 5-221 (546)
79 PRK11259 solA N-methyltryptoph 99.4 4E-11 8.7E-16 127.2 22.9 61 208-286 145-205 (376)
80 PRK01747 mnmC bifunctional tRN 99.4 5.9E-11 1.3E-15 135.0 24.8 154 107-286 260-464 (662)
81 PLN02464 glycerol-3-phosphate 99.4 4.2E-10 9E-15 126.5 29.3 70 207-286 227-297 (627)
82 PF12831 FAD_oxidored: FAD dep 99.4 7.5E-13 1.6E-17 142.6 6.4 141 109-283 1-148 (428)
83 PRK11728 hydroxyglutarate oxid 99.4 8E-11 1.7E-15 125.7 21.9 168 106-298 1-214 (393)
84 COG0665 DadA Glycine/D-amino a 99.3 6.7E-11 1.5E-15 125.8 21.2 202 206-452 150-367 (387)
85 PRK12266 glpD glycerol-3-phosp 99.3 3.2E-10 7E-15 124.7 26.5 67 208-286 151-217 (508)
86 PF00890 FAD_binding_2: FAD bi 99.3 1.9E-11 4.1E-16 131.6 15.6 161 109-286 1-204 (417)
87 TIGR01813 flavo_cyto_c flavocy 99.3 1.1E-11 2.4E-16 134.3 13.9 169 109-296 1-202 (439)
88 PRK08274 tricarballylate dehyd 99.3 4.5E-11 9.7E-16 130.6 17.9 196 106-320 3-230 (466)
89 PTZ00139 Succinate dehydrogena 99.3 5.4E-11 1.2E-15 133.5 18.5 167 104-287 26-231 (617)
90 PRK06481 fumarate reductase fl 99.3 3.4E-11 7.3E-16 132.5 16.3 172 104-296 58-261 (506)
91 PRK13369 glycerol-3-phosphate 99.3 3E-09 6.4E-14 117.2 31.0 66 208-286 151-216 (502)
92 PLN00128 Succinate dehydrogena 99.3 5.6E-11 1.2E-15 133.4 17.5 166 105-287 48-252 (635)
93 COG1249 Lpd Pyruvate/2-oxoglut 99.3 7.9E-12 1.7E-16 133.6 10.0 143 106-286 3-148 (454)
94 PRK08275 putative oxidoreducta 99.3 3.7E-11 8.1E-16 133.6 15.5 170 103-287 5-202 (554)
95 PRK07121 hypothetical protein; 99.3 7.4E-11 1.6E-15 129.6 17.5 73 211-296 176-249 (492)
96 PRK08958 sdhA succinate dehydr 99.3 6.7E-11 1.4E-15 132.1 17.4 165 106-287 6-208 (588)
97 KOG1335 Dihydrolipoamide dehyd 99.3 7.8E-12 1.7E-16 125.2 8.6 146 106-283 38-183 (506)
98 PRK07057 sdhA succinate dehydr 99.3 1.1E-10 2.3E-15 130.7 18.6 165 105-287 10-213 (591)
99 PRK09078 sdhA succinate dehydr 99.3 1E-10 2.2E-15 131.0 18.4 65 212-286 149-213 (598)
100 PRK07804 L-aspartate oxidase; 99.3 9.4E-11 2E-15 129.9 18.0 166 104-287 13-212 (541)
101 PRK05192 tRNA uridine 5-carbox 99.3 3.5E-11 7.6E-16 131.6 13.8 149 106-285 3-157 (618)
102 PRK06467 dihydrolipoamide dehy 99.3 1.2E-11 2.5E-16 135.1 10.0 147 106-286 3-149 (471)
103 TIGR01424 gluta_reduc_2 glutat 99.3 8.5E-12 1.8E-16 135.4 8.9 142 107-286 2-143 (446)
104 PTZ00058 glutathione reductase 99.3 7.1E-12 1.5E-16 138.3 7.9 53 106-165 47-99 (561)
105 PF13738 Pyr_redox_3: Pyridine 99.3 8.9E-12 1.9E-16 120.2 7.6 137 111-286 1-139 (203)
106 PLN02546 glutathione reductase 99.3 3.6E-11 7.8E-16 132.8 13.0 141 105-286 77-229 (558)
107 PRK06452 sdhA succinate dehydr 99.3 1.1E-10 2.4E-15 130.0 16.6 166 105-287 3-200 (566)
108 PRK07573 sdhA succinate dehydr 99.2 1.1E-10 2.3E-15 131.5 16.0 62 215-287 173-234 (640)
109 TIGR01421 gluta_reduc_1 glutat 99.2 1.8E-11 4E-16 132.7 9.5 140 107-286 2-142 (450)
110 PRK12835 3-ketosteroid-delta-1 99.2 1.8E-10 3.9E-15 128.5 17.0 94 213-319 214-312 (584)
111 PTZ00383 malate:quinone oxidor 99.2 1.9E-10 4E-15 125.2 15.8 72 207-298 206-283 (497)
112 PF01134 GIDA: Glucose inhibit 99.2 9.7E-11 2.1E-15 121.8 12.9 144 109-283 1-150 (392)
113 PRK05976 dihydrolipoamide dehy 99.2 3.8E-11 8.2E-16 131.3 10.3 53 106-165 3-55 (472)
114 PRK08205 sdhA succinate dehydr 99.2 3E-10 6.6E-15 127.0 17.7 67 211-287 139-208 (583)
115 PRK06175 L-aspartate oxidase; 99.2 6.4E-11 1.4E-15 127.7 11.0 162 106-287 3-191 (433)
116 PRK06263 sdhA succinate dehydr 99.2 2.6E-10 5.6E-15 126.7 16.1 159 104-286 4-198 (543)
117 PRK06069 sdhA succinate dehydr 99.2 4.1E-10 8.9E-15 125.9 17.7 167 104-287 2-202 (577)
118 PRK12839 hypothetical protein; 99.2 4.8E-10 1E-14 124.7 17.9 69 209-288 211-279 (572)
119 PRK05945 sdhA succinate dehydr 99.2 4.3E-10 9.4E-15 125.6 17.3 65 212-287 135-199 (575)
120 PRK06116 glutathione reductase 99.2 3E-11 6.6E-16 131.3 7.7 52 107-165 4-55 (450)
121 PRK12845 3-ketosteroid-delta-1 99.2 3.9E-10 8.5E-15 125.1 16.6 94 212-319 217-315 (564)
122 COG2072 TrkA Predicted flavopr 99.2 5.1E-10 1.1E-14 120.7 17.0 162 105-338 6-171 (443)
123 TIGR01320 mal_quin_oxido malat 99.2 4.1E-10 8.9E-15 122.8 16.2 80 205-298 171-250 (483)
124 PLN02172 flavin-containing mon 99.2 3.1E-10 6.7E-15 122.9 15.1 153 106-285 9-173 (461)
125 TIGR01812 sdhA_frdA_Gneg succi 99.2 5.2E-10 1.1E-14 125.1 17.3 66 212-288 129-194 (566)
126 PRK05249 soluble pyridine nucl 99.2 7.1E-11 1.5E-15 128.9 10.1 146 106-286 4-150 (461)
127 PRK09231 fumarate reductase fl 99.2 4.8E-10 1E-14 125.2 16.8 168 105-287 2-198 (582)
128 PLN02815 L-aspartate oxidase 99.2 3.8E-10 8.3E-15 125.6 16.0 166 104-286 26-223 (594)
129 PRK06115 dihydrolipoamide dehy 99.2 6.5E-11 1.4E-15 129.1 9.4 54 107-166 3-56 (466)
130 COG0492 TrxB Thioredoxin reduc 99.2 1.5E-10 3.2E-15 118.1 11.0 114 106-286 2-116 (305)
131 PRK06370 mercuric reductase; V 99.2 7.4E-11 1.6E-15 128.7 9.3 54 106-166 4-57 (463)
132 PRK08641 sdhA succinate dehydr 99.2 7.5E-10 1.6E-14 123.8 17.5 160 107-287 3-202 (589)
133 PRK06416 dihydrolipoamide dehy 99.2 3.4E-10 7.4E-15 123.5 14.4 53 106-165 3-55 (462)
134 TIGR01176 fum_red_Fp fumarate 99.2 9.2E-10 2E-14 122.7 18.0 167 106-287 2-197 (580)
135 PRK07803 sdhA succinate dehydr 99.2 7.9E-10 1.7E-14 124.4 17.5 166 105-287 6-215 (626)
136 PRK12834 putative FAD-binding 99.1 3.8E-10 8.2E-15 125.5 14.2 181 106-295 3-236 (549)
137 TIGR02730 carot_isom carotene 99.1 1.5E-08 3.2E-13 111.6 26.5 63 211-289 228-290 (493)
138 PRK06327 dihydrolipoamide dehy 99.1 1.3E-10 2.9E-15 127.0 9.7 147 106-286 3-158 (475)
139 PRK05257 malate:quinone oxidor 99.1 2.3E-09 4.9E-14 117.1 19.2 79 206-298 177-256 (494)
140 PF08491 SE: Squalene epoxidas 99.1 4.1E-09 8.8E-14 104.0 18.5 175 274-467 2-188 (276)
141 TIGR01423 trypano_reduc trypan 99.1 2E-10 4.3E-15 125.4 10.4 56 106-166 2-65 (486)
142 COG0578 GlpA Glycerol-3-phosph 99.1 1.4E-08 3E-13 109.3 24.1 172 106-298 11-235 (532)
143 PRK06854 adenylylsulfate reduc 99.1 5.7E-10 1.2E-14 125.2 14.2 163 105-286 9-196 (608)
144 TIGR00551 nadB L-aspartate oxi 99.1 1.1E-09 2.3E-14 120.3 16.0 162 107-288 2-192 (488)
145 PRK08626 fumarate reductase fl 99.1 1.1E-09 2.3E-14 123.7 16.2 65 212-287 158-222 (657)
146 PRK12837 3-ketosteroid-delta-1 99.1 5.5E-10 1.2E-14 123.1 13.3 93 213-319 174-271 (513)
147 PRK14727 putative mercuric red 99.1 8.7E-10 1.9E-14 120.7 14.8 59 101-165 10-68 (479)
148 TIGR03364 HpnW_proposed FAD de 99.1 7.5E-10 1.6E-14 117.0 13.8 151 108-286 1-198 (365)
149 TIGR00136 gidA glucose-inhibit 99.1 5.5E-10 1.2E-14 122.1 12.8 148 108-285 1-154 (617)
150 PRK07395 L-aspartate oxidase; 99.1 4E-10 8.6E-15 124.9 12.0 163 105-286 7-198 (553)
151 PRK12844 3-ketosteroid-delta-1 99.1 4.6E-10 9.9E-15 124.8 12.5 71 212-296 208-279 (557)
152 PRK08401 L-aspartate oxidase; 99.1 5.9E-10 1.3E-14 121.5 13.1 156 108-288 2-178 (466)
153 TIGR01292 TRX_reduct thioredox 99.1 8E-10 1.7E-14 113.1 13.3 113 108-286 1-113 (300)
154 TIGR01811 sdhA_Bsu succinate d 99.1 1.5E-09 3.3E-14 121.5 16.4 66 212-287 129-198 (603)
155 PRK07251 pyridine nucleotide-d 99.1 8.7E-10 1.9E-14 119.5 14.1 51 107-163 3-54 (438)
156 PRK09077 L-aspartate oxidase; 99.1 2E-09 4.3E-14 119.3 17.0 160 105-287 6-209 (536)
157 PRK07843 3-ketosteroid-delta-1 99.1 2.9E-09 6.2E-14 118.5 18.4 70 213-296 209-279 (557)
158 PLN02507 glutathione reductase 99.1 2.5E-10 5.5E-15 125.2 9.6 145 106-286 24-180 (499)
159 PTZ00306 NADH-dependent fumara 99.1 7.8E-10 1.7E-14 132.4 14.4 179 104-296 406-633 (1167)
160 PRK14694 putative mercuric red 99.1 1.4E-09 2.9E-14 118.9 15.0 54 105-165 4-57 (468)
161 PRK12843 putative FAD-binding 99.1 8.7E-10 1.9E-14 123.2 13.7 93 211-317 220-316 (578)
162 TIGR01438 TGR thioredoxin and 99.1 2.9E-10 6.4E-15 124.2 9.5 146 107-286 2-156 (484)
163 PRK06134 putative FAD-binding 99.1 1.6E-09 3.5E-14 121.2 15.4 68 209-289 214-282 (581)
164 PRK12842 putative succinate de 99.1 1.7E-09 3.7E-14 120.9 15.6 65 212-289 214-279 (574)
165 TIGR02053 MerA mercuric reduct 99.1 3E-10 6.5E-15 124.0 9.1 52 108-166 1-52 (463)
166 TIGR02734 crtI_fam phytoene de 99.1 4.1E-08 8.9E-13 108.4 26.0 61 212-288 219-279 (502)
167 PRK08071 L-aspartate oxidase; 99.1 2.3E-09 5.1E-14 118.0 15.9 161 107-287 3-192 (510)
168 PRK13339 malate:quinone oxidor 99.1 3.1E-09 6.7E-14 115.3 16.3 79 206-298 178-257 (497)
169 KOG0405 Pyridine nucleotide-di 99.1 1.9E-10 4.1E-15 114.0 6.1 151 104-287 17-167 (478)
170 PRK07233 hypothetical protein; 99.0 1.1E-07 2.3E-12 102.8 28.0 56 212-284 198-253 (434)
171 PRK15317 alkyl hydroperoxide r 99.0 1.7E-09 3.6E-14 119.6 14.0 115 105-286 209-323 (517)
172 PRK08010 pyridine nucleotide-d 99.0 1.5E-09 3.2E-14 117.8 12.7 51 107-163 3-54 (441)
173 PRK13748 putative mercuric red 99.0 2.6E-09 5.6E-14 119.5 14.8 53 106-165 97-149 (561)
174 TIGR02061 aprA adenosine phosp 99.0 1.7E-09 3.7E-14 120.5 12.6 65 212-286 126-192 (614)
175 KOG2820 FAD-dependent oxidored 99.0 5.4E-09 1.2E-13 103.8 14.5 161 104-285 4-212 (399)
176 TIGR01350 lipoamide_DH dihydro 99.0 6.3E-10 1.4E-14 121.4 8.8 51 107-164 1-51 (461)
177 PTZ00153 lipoamide dehydrogena 99.0 9.9E-10 2.1E-14 123.1 10.4 56 106-167 115-171 (659)
178 KOG1399 Flavin-containing mono 99.0 2.2E-09 4.7E-14 114.5 12.4 144 106-284 5-152 (448)
179 PTZ00052 thioredoxin reductase 99.0 8.1E-10 1.7E-14 121.4 8.7 52 107-164 5-64 (499)
180 TIGR03143 AhpF_homolog putativ 99.0 4.2E-09 9E-14 117.3 14.4 112 107-286 4-115 (555)
181 PF00743 FMO-like: Flavin-bind 99.0 4.1E-09 8.8E-14 115.8 13.8 140 109-286 3-151 (531)
182 TIGR03452 mycothione_red mycot 99.0 1E-09 2.2E-14 119.3 8.9 51 107-166 2-52 (452)
183 TIGR00275 flavoprotein, HI0933 99.0 3.4E-09 7.3E-14 113.3 12.6 147 111-285 1-160 (400)
184 TIGR03140 AhpF alkyl hydropero 99.0 5.3E-09 1.1E-13 115.5 14.0 114 105-285 210-323 (515)
185 PRK07818 dihydrolipoamide dehy 99.0 6.8E-09 1.5E-13 113.4 14.5 51 107-164 4-54 (466)
186 PRK07846 mycothione reductase; 99.0 9.9E-10 2.1E-14 119.2 7.8 51 107-166 1-51 (451)
187 PRK06912 acoL dihydrolipoamide 99.0 1.8E-09 4E-14 117.5 9.6 52 109-167 2-53 (458)
188 PRK07512 L-aspartate oxidase; 98.9 1E-08 2.2E-13 113.0 14.7 64 211-287 135-199 (513)
189 PRK07845 flavoprotein disulfid 98.9 2.9E-09 6.2E-14 116.2 10.2 144 109-286 3-152 (466)
190 KOG2852 Possible oxidoreductas 98.9 1.8E-08 3.9E-13 97.9 14.3 165 106-286 9-209 (380)
191 TIGR02485 CobZ_N-term precorri 98.9 1.8E-08 3.9E-13 109.0 16.1 72 211-296 122-194 (432)
192 KOG2853 Possible oxidoreductas 98.9 1E-07 2.2E-12 94.7 18.9 41 106-148 85-125 (509)
193 PRK06292 dihydrolipoamide dehy 98.9 2E-09 4.3E-14 117.5 7.9 53 106-165 2-54 (460)
194 PLN02612 phytoene desaturase 98.9 3.3E-07 7.1E-12 102.3 25.2 57 212-283 308-364 (567)
195 PRK13800 putative oxidoreducta 98.9 1.9E-08 4.1E-13 118.0 14.9 166 104-287 10-207 (897)
196 KOG2404 Fumarate reductase, fl 98.9 5.1E-09 1.1E-13 103.0 8.2 187 109-322 11-246 (477)
197 TIGR00562 proto_IX_ox protopor 98.8 8.8E-07 1.9E-11 96.7 25.4 42 108-153 3-46 (462)
198 PRK05329 anaerobic glycerol-3- 98.8 5.5E-07 1.2E-11 96.2 23.0 60 212-285 259-318 (422)
199 TIGR02731 phytoene_desat phyto 98.8 7.3E-07 1.6E-11 97.1 24.6 63 212-284 213-275 (453)
200 COG1233 Phytoene dehydrogenase 98.8 2.1E-08 4.6E-13 109.8 12.1 58 210-283 222-279 (487)
201 PRK11883 protoporphyrinogen ox 98.8 5.4E-06 1.2E-10 90.1 30.3 39 109-153 2-42 (451)
202 PF07992 Pyr_redox_2: Pyridine 98.8 1E-08 2.2E-13 98.6 7.9 117 109-286 1-123 (201)
203 COG3380 Predicted NAD/FAD-depe 98.8 3.5E-08 7.5E-13 95.4 11.2 142 108-283 2-158 (331)
204 PLN02576 protoporphyrinogen ox 98.8 2.6E-06 5.5E-11 94.0 27.6 42 107-153 12-53 (496)
205 PRK12416 protoporphyrinogen ox 98.8 7.8E-07 1.7E-11 97.2 23.2 45 109-153 3-47 (463)
206 PRK13977 myosin-cross-reactive 98.8 8.7E-08 1.9E-12 104.3 15.4 65 212-286 226-294 (576)
207 PF06039 Mqo: Malate:quinone o 98.8 1.4E-07 3E-12 98.7 16.0 79 207-299 176-255 (488)
208 PRK10262 thioredoxin reductase 98.8 4.8E-08 1E-12 101.4 12.7 114 106-286 5-118 (321)
209 COG1053 SdhA Succinate dehydro 98.8 5E-08 1.1E-12 107.4 13.5 167 105-287 4-204 (562)
210 PF13434 K_oxygenase: L-lysine 98.8 4.9E-09 1.1E-13 109.2 4.4 151 107-286 2-160 (341)
211 KOG2960 Protein involved in th 98.8 3.2E-08 6.9E-13 92.0 9.0 154 107-287 76-236 (328)
212 PF00070 Pyr_redox: Pyridine n 98.7 1.5E-07 3.3E-12 76.4 11.1 79 109-253 1-79 (80)
213 PLN02676 polyamine oxidase 98.7 2.9E-06 6.3E-11 92.9 24.4 41 106-152 25-66 (487)
214 TIGR02352 thiamin_ThiO glycine 98.7 9.9E-07 2.2E-11 91.8 19.8 195 206-451 131-335 (337)
215 PRK07208 hypothetical protein; 98.7 2.1E-07 4.6E-12 102.1 15.3 42 105-152 2-43 (479)
216 PLN02487 zeta-carotene desatur 98.7 1.6E-05 3.5E-10 88.2 28.3 60 213-284 296-359 (569)
217 KOG0404 Thioredoxin reductase 98.7 5.1E-08 1.1E-12 91.4 7.3 117 107-285 8-124 (322)
218 TIGR02732 zeta_caro_desat caro 98.7 6.7E-06 1.5E-10 89.9 25.1 60 214-285 221-284 (474)
219 KOG0042 Glycerol-3-phosphate d 98.7 1.7E-07 3.6E-12 98.5 11.7 67 210-286 222-288 (680)
220 COG0445 GidA Flavin-dependent 98.6 2.9E-08 6.3E-13 104.8 5.9 146 107-284 4-157 (621)
221 PRK12831 putative oxidoreducta 98.6 1.6E-06 3.5E-11 94.4 19.5 42 106-153 139-180 (464)
222 PRK12779 putative bifunctional 98.6 1E-07 2.2E-12 111.4 10.7 98 107-284 306-403 (944)
223 PRK09897 hypothetical protein; 98.6 2.9E-07 6.3E-12 101.0 13.4 148 108-284 2-165 (534)
224 COG2509 Uncharacterized FAD-de 98.6 6.5E-07 1.4E-11 92.9 14.8 83 211-313 172-255 (486)
225 TIGR01372 soxA sarcosine oxida 98.6 3.3E-07 7.1E-12 108.6 14.2 123 106-286 162-287 (985)
226 COG1231 Monoamine oxidase [Ami 98.6 3.8E-06 8.1E-11 87.8 19.7 42 106-153 6-47 (450)
227 PTZ00363 rab-GDP dissociation 98.6 1.5E-06 3.3E-11 93.4 16.6 60 211-285 231-290 (443)
228 TIGR01316 gltA glutamate synth 98.6 4.2E-06 9.2E-11 90.9 20.2 42 106-153 132-173 (449)
229 PLN03000 amine oxidase 98.6 3.7E-06 8.1E-11 95.8 20.2 42 106-153 183-224 (881)
230 KOG2844 Dimethylglycine dehydr 98.6 2.6E-07 5.6E-12 99.2 10.0 68 202-286 177-244 (856)
231 PF13454 NAD_binding_9: FAD-NA 98.6 2.2E-07 4.7E-12 85.8 8.4 147 111-283 1-155 (156)
232 PRK09853 putative selenate red 98.6 1.9E-07 4.1E-12 107.9 9.7 39 106-150 538-576 (1019)
233 PRK12810 gltD glutamate syntha 98.6 3.8E-06 8.3E-11 91.9 19.5 41 106-152 142-182 (471)
234 COG0029 NadB Aspartate oxidase 98.5 5.7E-07 1.2E-11 94.4 12.0 67 211-288 132-199 (518)
235 COG1249 Lpd Pyruvate/2-oxoglut 98.5 6.6E-07 1.4E-11 96.1 12.4 114 106-298 172-285 (454)
236 KOG4254 Phytoene desaturase [C 98.5 2.1E-07 4.6E-12 95.8 8.0 61 211-287 263-323 (561)
237 PRK09564 coenzyme A disulfide 98.5 6E-07 1.3E-11 97.5 11.9 113 109-286 2-116 (444)
238 TIGR03378 glycerol3P_GlpB glyc 98.5 2.1E-06 4.5E-11 90.8 14.5 64 209-286 260-324 (419)
239 TIGR03315 Se_ygfK putative sel 98.5 3E-07 6.5E-12 106.8 8.8 40 106-151 536-575 (1012)
240 PF13450 NAD_binding_8: NAD(P) 98.5 2E-07 4.3E-12 73.0 4.7 35 112-152 1-35 (68)
241 PLN02852 ferredoxin-NADP+ redu 98.5 5.7E-07 1.2E-11 97.6 9.7 42 106-151 25-66 (491)
242 PF00732 GMC_oxred_N: GMC oxid 98.5 6.6E-07 1.4E-11 91.7 9.8 74 213-297 194-268 (296)
243 TIGR03197 MnmC_Cterm tRNA U-34 98.4 4.5E-06 9.8E-11 88.8 16.1 62 207-286 130-191 (381)
244 COG3634 AhpF Alkyl hydroperoxi 98.4 3.2E-07 6.9E-12 91.4 6.7 114 106-284 210-324 (520)
245 TIGR03377 glycerol3P_GlpA glyc 98.4 2.7E-05 5.8E-10 86.3 22.1 78 207-298 123-200 (516)
246 PRK14989 nitrite reductase sub 98.4 3.4E-06 7.4E-11 97.8 15.5 111 108-298 146-256 (847)
247 PRK04965 NADH:flavorubredoxin 98.4 1.5E-06 3.2E-11 92.4 11.6 110 107-286 2-112 (377)
248 PRK13512 coenzyme A disulfide 98.4 1.1E-06 2.3E-11 95.3 10.7 37 109-149 3-39 (438)
249 PRK12778 putative bifunctional 98.4 7.8E-07 1.7E-11 102.8 9.9 39 106-150 430-468 (752)
250 COG1232 HemY Protoporphyrinoge 98.4 4E-05 8.7E-10 81.7 22.0 40 109-152 2-41 (444)
251 PRK05335 tRNA (uracil-5-)-meth 98.4 1.7E-06 3.7E-11 91.2 11.3 37 107-149 2-38 (436)
252 TIGR02462 pyranose_ox pyranose 98.4 5.9E-06 1.3E-10 90.7 15.7 37 108-150 1-37 (544)
253 KOG2665 Predicted FAD-dependen 98.4 2.7E-06 5.8E-11 84.0 11.2 163 106-286 47-258 (453)
254 PRK11749 dihydropyrimidine deh 98.4 1.3E-06 2.8E-11 95.2 10.2 39 106-150 139-177 (457)
255 PRK09754 phenylpropionate diox 98.4 5.3E-06 1.2E-10 88.7 14.5 108 108-298 145-252 (396)
256 PRK04965 NADH:flavorubredoxin 98.4 4.9E-06 1.1E-10 88.4 14.0 109 108-298 142-250 (377)
257 PRK12775 putative trifunctiona 98.4 6.6E-07 1.4E-11 105.6 7.9 38 107-150 430-467 (1006)
258 PRK09754 phenylpropionate diox 98.3 2E-06 4.4E-11 91.9 10.5 110 108-286 4-113 (396)
259 PRK12769 putative oxidoreducta 98.3 1.7E-06 3.7E-11 98.4 10.0 39 106-150 326-364 (654)
260 PRK05976 dihydrolipoamide dehy 98.3 7.3E-06 1.6E-10 89.8 14.0 104 107-287 180-283 (472)
261 TIGR01318 gltD_gamma_fam gluta 98.3 2.5E-06 5.3E-11 93.2 10.2 39 106-150 140-178 (467)
262 COG1252 Ndh NADH dehydrogenase 98.3 3.7E-06 8.1E-11 88.3 10.5 101 107-286 155-263 (405)
263 TIGR01350 lipoamide_DH dihydro 98.3 6.4E-06 1.4E-10 90.0 12.9 103 107-288 170-272 (461)
264 TIGR03169 Nterm_to_SelD pyridi 98.3 3.6E-06 7.9E-11 88.9 10.7 108 109-286 1-108 (364)
265 PRK06116 glutathione reductase 98.3 9.6E-06 2.1E-10 88.3 13.9 101 107-287 167-267 (450)
266 TIGR02374 nitri_red_nirB nitri 98.3 1.3E-05 2.7E-10 93.0 15.4 109 108-298 141-249 (785)
267 KOG4716 Thioredoxin reductase 98.3 9E-06 1.9E-10 81.0 12.0 54 105-164 17-78 (503)
268 PRK12814 putative NADPH-depend 98.3 2.9E-06 6.3E-11 96.3 9.7 39 106-150 192-230 (652)
269 PRK12770 putative glutamate sy 98.3 2.8E-06 6E-11 89.4 8.9 38 107-150 18-55 (352)
270 PRK06370 mercuric reductase; V 98.3 1.1E-05 2.5E-10 88.0 14.0 103 107-287 171-273 (463)
271 KOG0685 Flavin-containing amin 98.3 1.9E-05 4E-10 82.7 14.5 42 107-153 21-62 (498)
272 PRK05249 soluble pyridine nucl 98.2 1E-05 2.2E-10 88.5 13.4 100 107-287 175-274 (461)
273 COG3075 GlpB Anaerobic glycero 98.2 6.5E-06 1.4E-10 81.9 10.1 59 212-284 258-316 (421)
274 TIGR01421 gluta_reduc_1 glutat 98.2 1.5E-05 3.3E-10 86.6 14.1 100 108-287 167-267 (450)
275 TIGR02053 MerA mercuric reduct 98.2 1.4E-05 3.1E-10 87.3 13.9 102 108-287 167-268 (463)
276 PRK14989 nitrite reductase sub 98.2 5.8E-06 1.3E-10 95.9 11.2 111 108-286 4-114 (847)
277 TIGR00137 gid_trmFO tRNA:m(5)U 98.2 1.6E-05 3.5E-10 84.5 13.6 37 108-150 1-37 (433)
278 PRK07251 pyridine nucleotide-d 98.2 1.5E-05 3.3E-10 86.5 13.5 98 108-287 158-255 (438)
279 PRK06416 dihydrolipoamide dehy 98.2 1.4E-05 3.1E-10 87.3 13.3 102 108-287 173-274 (462)
280 PRK07818 dihydrolipoamide dehy 98.2 1.4E-05 3.1E-10 87.4 12.7 103 108-287 173-275 (466)
281 TIGR02374 nitri_red_nirB nitri 98.2 5.4E-06 1.2E-10 96.0 9.5 109 110-286 1-109 (785)
282 COG3486 IucD Lysine/ornithine 98.2 7.8E-06 1.7E-10 84.0 9.4 152 106-291 4-163 (436)
283 PRK09564 coenzyme A disulfide 98.2 2.1E-05 4.5E-10 85.5 13.5 108 108-298 150-257 (444)
284 COG3573 Predicted oxidoreducta 98.2 5.3E-05 1.1E-09 75.6 14.8 40 106-151 4-45 (552)
285 PRK06115 dihydrolipoamide dehy 98.2 2.6E-05 5.7E-10 85.2 14.1 105 107-287 174-278 (466)
286 PTZ00188 adrenodoxin reductase 98.2 5.8E-06 1.2E-10 88.7 8.6 39 107-151 39-78 (506)
287 PRK06912 acoL dihydrolipoamide 98.1 2.8E-05 6.2E-10 84.8 14.1 100 108-287 171-270 (458)
288 KOG1336 Monodehydroascorbate/f 98.1 2E-05 4.3E-10 82.6 11.9 103 107-287 213-315 (478)
289 TIGR01424 gluta_reduc_2 glutat 98.1 2.5E-05 5.3E-10 85.0 13.2 99 107-286 166-264 (446)
290 PRK12809 putative oxidoreducta 98.1 7.6E-06 1.6E-10 92.8 9.5 39 106-150 309-347 (639)
291 PTZ00058 glutathione reductase 98.1 2.2E-05 4.9E-10 87.1 12.8 102 107-287 237-338 (561)
292 KOG0029 Amine oxidase [Seconda 98.1 2.6E-06 5.7E-11 92.7 5.3 41 106-152 14-54 (501)
293 PTZ00318 NADH dehydrogenase-li 98.1 1.2E-05 2.5E-10 86.9 10.0 117 107-286 10-126 (424)
294 COG0446 HcaD Uncharacterized N 98.1 2.2E-05 4.8E-10 83.9 12.0 102 107-286 136-238 (415)
295 PRK07845 flavoprotein disulfid 98.1 3.5E-05 7.6E-10 84.2 13.7 99 108-287 178-276 (466)
296 PLN02507 glutathione reductase 98.1 3.3E-05 7.1E-10 85.1 13.4 100 107-287 203-302 (499)
297 PRK12771 putative glutamate sy 98.1 9.5E-06 2.1E-10 90.8 8.9 39 106-150 136-174 (564)
298 KOG2311 NAD/FAD-utilizing prot 98.1 5.7E-06 1.2E-10 85.9 6.2 144 106-284 27-185 (679)
299 TIGR03385 CoA_CoA_reduc CoA-di 98.1 3.5E-05 7.7E-10 83.3 12.8 107 108-298 138-244 (427)
300 COG4529 Uncharacterized protei 98.1 3E-05 6.6E-10 81.8 11.7 158 108-289 2-168 (474)
301 PRK06327 dihydrolipoamide dehy 98.1 4.9E-05 1.1E-09 83.3 13.9 103 108-287 184-286 (475)
302 TIGR01317 GOGAT_sm_gam glutama 98.1 8.1E-06 1.8E-10 89.5 7.7 38 107-150 143-180 (485)
303 TIGR01423 trypano_reduc trypan 98.0 4.4E-05 9.6E-10 83.6 13.1 104 107-287 187-290 (486)
304 PRK13512 coenzyme A disulfide 98.0 3.4E-05 7.3E-10 83.7 11.9 104 108-298 149-252 (438)
305 PLN02785 Protein HOTHEAD 98.0 0.0001 2.2E-09 82.5 15.9 35 106-147 54-88 (587)
306 PRK08010 pyridine nucleotide-d 98.0 5.7E-05 1.2E-09 82.0 13.7 98 108-287 159-256 (441)
307 PF01593 Amino_oxidase: Flavin 98.0 7E-05 1.5E-09 80.1 14.2 62 206-284 203-264 (450)
308 PRK05675 sdhA succinate dehydr 98.0 8.3E-05 1.8E-09 83.2 15.0 67 211-287 125-191 (570)
309 COG0493 GltD NADPH-dependent g 98.0 1.1E-05 2.3E-10 86.9 7.5 73 108-235 124-196 (457)
310 PRK06567 putative bifunctional 98.0 1.2E-05 2.5E-10 92.4 8.0 38 106-149 382-419 (1028)
311 COG2907 Predicted NAD/FAD-bind 98.0 3.2E-05 6.9E-10 77.7 10.0 40 106-152 7-46 (447)
312 PTZ00318 NADH dehydrogenase-li 98.0 3.8E-05 8.3E-10 82.9 11.3 100 108-286 174-281 (424)
313 PRK14694 putative mercuric red 98.0 7.7E-05 1.7E-09 81.6 13.8 97 108-287 179-275 (468)
314 TIGR00031 UDP-GALP_mutase UDP- 98.0 7E-06 1.5E-10 86.4 5.3 40 108-153 2-41 (377)
315 PTZ00153 lipoamide dehydrogena 98.0 9.7E-05 2.1E-09 83.3 14.6 116 108-287 313-429 (659)
316 PLN02546 glutathione reductase 98.0 5.9E-05 1.3E-09 83.8 12.7 100 108-287 253-352 (558)
317 PLN02268 probable polyamine ox 98.0 6.8E-06 1.5E-10 89.1 5.2 39 109-153 2-40 (435)
318 PRK13984 putative oxidoreducta 98.0 2.5E-05 5.3E-10 88.3 9.8 39 106-150 282-320 (604)
319 PRK14727 putative mercuric red 98.0 7.5E-05 1.6E-09 81.9 13.2 97 108-287 189-285 (479)
320 TIGR02733 desat_CrtD C-3',4' d 98.0 7.4E-06 1.6E-10 90.2 5.3 63 211-284 231-293 (492)
321 TIGR01810 betA choline dehydro 98.0 3E-05 6.6E-10 86.2 10.1 71 214-298 196-266 (532)
322 PRK07846 mycothione reductase; 98.0 7.8E-05 1.7E-09 81.1 12.9 99 107-287 166-264 (451)
323 PRK06467 dihydrolipoamide dehy 97.9 0.00012 2.6E-09 80.1 13.5 103 108-288 175-277 (471)
324 PRK13748 putative mercuric red 97.9 0.00012 2.5E-09 82.2 13.5 97 108-287 271-367 (561)
325 KOG1335 Dihydrolipoamide dehyd 97.9 6.4E-05 1.4E-09 76.4 9.9 106 107-287 211-316 (506)
326 PTZ00052 thioredoxin reductase 97.9 0.00014 3E-09 80.2 13.7 98 108-287 183-280 (499)
327 PRK10262 thioredoxin reductase 97.9 0.00012 2.5E-09 76.0 12.4 104 107-286 146-249 (321)
328 TIGR03140 AhpF alkyl hydropero 97.9 9.9E-05 2.2E-09 81.7 12.5 99 107-286 352-451 (515)
329 KOG3923 D-aspartate oxidase [A 97.9 0.001 2.2E-08 65.8 17.6 41 107-147 3-44 (342)
330 COG1252 Ndh NADH dehydrogenase 97.9 4.9E-05 1.1E-09 79.9 9.1 109 107-286 3-112 (405)
331 TIGR03452 mycothione_red mycot 97.9 0.00016 3.6E-09 78.6 13.5 99 107-287 169-267 (452)
332 TIGR01438 TGR thioredoxin and 97.8 0.00018 4E-09 78.9 13.5 101 108-287 181-281 (484)
333 COG0562 Glf UDP-galactopyranos 97.8 2.1E-05 4.5E-10 78.3 5.0 40 108-153 2-41 (374)
334 PLN02568 polyamine oxidase 97.8 2.1E-05 4.5E-10 87.1 5.5 46 106-152 4-49 (539)
335 PRK06292 dihydrolipoamide dehy 97.8 0.00024 5.2E-09 77.6 13.8 103 107-288 169-271 (460)
336 PRK15317 alkyl hydroperoxide r 97.8 0.00018 3.9E-09 79.7 12.3 98 108-286 352-450 (517)
337 COG3349 Uncharacterized conser 97.8 2.3E-05 5E-10 83.4 4.8 40 109-154 2-41 (485)
338 COG1148 HdrA Heterodisulfide r 97.7 2.9E-05 6.3E-10 81.1 4.8 41 105-151 122-162 (622)
339 TIGR01292 TRX_reduct thioredox 97.7 0.00032 6.9E-09 71.6 12.3 98 107-286 141-239 (300)
340 TIGR03169 Nterm_to_SelD pyridi 97.7 0.00035 7.6E-09 73.8 12.6 99 108-286 146-244 (364)
341 KOG1276 Protoporphyrinogen oxi 97.6 8E-05 1.7E-09 76.9 5.1 45 106-154 10-54 (491)
342 PLN02529 lysine-specific histo 97.5 9.7E-05 2.1E-09 83.9 5.5 41 106-152 159-199 (738)
343 PRK12770 putative glutamate sy 97.5 0.00049 1.1E-08 72.4 10.4 109 108-286 173-287 (352)
344 COG1251 NirB NAD(P)H-nitrite r 97.5 0.00035 7.7E-09 77.0 9.4 150 64-298 105-254 (793)
345 PRK12769 putative oxidoreducta 97.5 0.00057 1.2E-08 78.0 11.6 110 108-285 469-584 (654)
346 PLN02328 lysine-specific histo 97.5 0.00012 2.5E-09 83.8 5.3 41 106-152 237-277 (808)
347 PRK12778 putative bifunctional 97.4 0.00082 1.8E-08 77.9 11.9 111 108-286 571-687 (752)
348 PRK11749 dihydropyrimidine deh 97.4 0.00086 1.9E-08 73.2 11.1 111 107-286 273-388 (457)
349 KOG0399 Glutamate synthase [Am 97.4 0.00028 6.1E-09 80.0 7.0 38 107-150 1785-1822(2142)
350 PRK02106 choline dehydrogenase 97.4 0.00015 3.3E-09 81.1 5.0 69 216-298 205-273 (560)
351 TIGR01318 gltD_gamma_fam gluta 97.4 0.0012 2.6E-08 72.2 11.5 112 107-286 282-399 (467)
352 KOG1800 Ferredoxin/adrenodoxin 97.3 0.00076 1.6E-08 68.8 8.0 41 107-151 20-60 (468)
353 PF06100 Strep_67kDa_ant: Stre 97.2 0.0092 2E-07 63.8 15.4 42 108-151 3-44 (500)
354 TIGR01816 sdhA_forward succina 97.2 0.0038 8.2E-08 69.9 13.1 66 211-287 118-183 (565)
355 KOG2495 NADH-dehydrogenase (ub 97.2 0.0021 4.5E-08 66.8 9.9 130 108-319 219-357 (491)
356 TIGR03862 flavo_PP4765 unchara 97.1 0.0064 1.4E-07 64.0 13.3 71 211-299 85-162 (376)
357 PF13434 K_oxygenase: L-lysine 97.1 0.0061 1.3E-07 63.6 12.5 140 106-283 189-339 (341)
358 PF00996 GDI: GDP dissociation 97.1 0.021 4.5E-07 61.3 16.4 54 212-281 232-285 (438)
359 PRK12809 putative oxidoreducta 97.0 0.0041 8.9E-08 70.7 11.6 111 107-285 451-567 (639)
360 COG2303 BetA Choline dehydroge 97.0 0.00051 1.1E-08 76.3 4.1 37 104-146 4-40 (542)
361 PLN02976 amine oxidase 97.0 0.00067 1.5E-08 80.5 5.2 41 106-152 692-732 (1713)
362 TIGR03143 AhpF_homolog putativ 97.0 0.005 1.1E-07 68.8 12.0 34 107-146 143-176 (555)
363 PRK12779 putative bifunctional 97.0 0.0049 1.1E-07 72.7 12.1 112 107-286 447-563 (944)
364 PRK12775 putative trifunctiona 97.0 0.006 1.3E-07 72.6 12.4 111 107-286 571-687 (1006)
365 PRK12814 putative NADPH-depend 96.9 0.0069 1.5E-07 69.0 11.7 111 107-285 323-437 (652)
366 KOG1346 Programmed cell death 96.9 0.0036 7.7E-08 64.5 8.2 113 108-299 348-461 (659)
367 TIGR01317 GOGAT_sm_gam glutama 96.9 0.0062 1.3E-07 66.9 10.7 124 108-284 284-413 (485)
368 TIGR01372 soxA sarcosine oxida 96.8 0.0084 1.8E-07 71.5 12.4 104 108-298 318-422 (985)
369 PRK09853 putative selenate red 96.6 0.013 2.7E-07 68.8 11.6 35 107-146 668-703 (1019)
370 PRK13984 putative oxidoreducta 96.6 0.014 3E-07 66.1 11.1 63 223-286 473-539 (604)
371 COG1206 Gid NAD(FAD)-utilizing 96.5 0.012 2.5E-07 59.3 8.3 37 107-149 3-39 (439)
372 KOG3851 Sulfide:quinone oxidor 96.4 0.0084 1.8E-07 60.0 7.2 37 106-146 38-74 (446)
373 KOG1238 Glucose dehydrogenase/ 96.4 0.0032 7E-08 68.9 4.2 39 105-148 55-93 (623)
374 KOG4716 Thioredoxin reductase 96.2 0.03 6.5E-07 56.5 9.8 110 108-298 199-308 (503)
375 KOG1336 Monodehydroascorbate/f 96.2 0.02 4.4E-07 60.5 9.1 44 222-284 137-180 (478)
376 TIGR03315 Se_ygfK putative sel 96.2 0.05 1.1E-06 64.2 12.8 35 107-146 666-701 (1012)
377 COG0492 TrxB Thioredoxin reduc 96.1 0.052 1.1E-06 55.6 11.4 96 107-286 143-239 (305)
378 PRK01438 murD UDP-N-acetylmura 96.1 0.019 4.1E-07 63.1 8.8 33 108-146 17-49 (480)
379 PRK12771 putative glutamate sy 96.0 0.042 9.1E-07 61.7 11.1 110 107-285 267-380 (564)
380 KOG2755 Oxidoreductase [Genera 95.8 0.0087 1.9E-07 58.3 4.0 35 110-148 2-36 (334)
381 PRK06567 putative bifunctional 95.7 0.06 1.3E-06 62.7 10.4 68 219-286 647-729 (1028)
382 COG0446 HcaD Uncharacterized N 95.6 0.053 1.2E-06 57.7 9.6 45 223-287 64-108 (415)
383 KOG0405 Pyridine nucleotide-di 95.6 0.035 7.6E-07 56.3 7.1 103 105-287 187-289 (478)
384 TIGR03467 HpnE squalene-associ 95.5 1.8 3.9E-05 46.2 20.6 55 214-284 199-253 (419)
385 PLN02172 flavin-containing mon 95.0 0.042 9.2E-07 59.9 6.3 34 107-146 204-237 (461)
386 COG3634 AhpF Alkyl hydroperoxi 94.7 0.17 3.8E-06 51.4 9.1 76 107-253 354-430 (520)
387 KOG1346 Programmed cell death 94.6 0.09 1.9E-06 54.6 6.9 58 205-286 255-312 (659)
388 PLN02852 ferredoxin-NADP+ redu 94.5 0.55 1.2E-05 51.5 13.3 73 213-285 267-354 (491)
389 COG1251 NirB NAD(P)H-nitrite r 94.1 0.32 7E-06 54.4 10.3 113 107-287 3-115 (793)
390 TIGR03385 CoA_CoA_reduc CoA-di 94.1 0.2 4.2E-06 54.2 8.8 39 413-451 260-303 (427)
391 KOG1439 RAB proteins geranylge 94.0 0.32 6.9E-06 50.6 9.4 59 211-286 231-289 (440)
392 PF00743 FMO-like: Flavin-bind 93.8 0.16 3.4E-06 56.4 7.5 34 107-146 183-216 (531)
393 COG0569 TrkA K+ transport syst 93.0 0.14 2.9E-06 50.3 4.8 52 109-166 2-62 (225)
394 PF01210 NAD_Gly3P_dh_N: NAD-d 92.8 0.14 3E-06 47.2 4.2 32 109-146 1-32 (157)
395 PLN02976 amine oxidase 92.7 2.7 5.8E-05 51.4 15.5 39 414-455 1150-1188(1713)
396 PRK02705 murD UDP-N-acetylmura 92.4 0.15 3.2E-06 55.7 4.6 34 109-148 2-35 (459)
397 PF02737 3HCDH_N: 3-hydroxyacy 91.9 0.22 4.8E-06 46.9 4.6 32 109-146 1-32 (180)
398 COG3486 IucD Lysine/ornithine 91.7 1.9 4.1E-05 45.2 11.3 65 212-287 275-342 (436)
399 TIGR02733 desat_CrtD C-3',4' d 91.6 0.59 1.3E-05 51.5 8.3 39 108-152 2-40 (492)
400 COG2440 FixX Ferredoxin-like p 91.5 0.058 1.3E-06 44.3 0.2 43 545-592 11-53 (99)
401 PF03721 UDPG_MGDP_dh_N: UDP-g 91.3 0.22 4.7E-06 47.2 3.8 33 109-147 2-34 (185)
402 PF02254 TrkA_N: TrkA-N domain 91.2 0.36 7.8E-06 41.5 4.9 49 110-164 1-56 (116)
403 KOG2495 NADH-dehydrogenase (ub 91.0 1.3 2.8E-05 46.7 9.3 38 104-147 52-89 (491)
404 PF02558 ApbA: Ketopantoate re 90.9 0.33 7.1E-06 44.0 4.6 31 110-146 1-31 (151)
405 PF01262 AlaDh_PNT_C: Alanine 90.8 0.33 7.2E-06 45.1 4.5 34 107-146 20-53 (168)
406 PLN02268 probable polyamine ox 90.8 7 0.00015 42.2 15.5 40 226-282 210-249 (435)
407 PRK09424 pntA NAD(P) transhydr 90.2 0.29 6.4E-06 53.6 4.1 34 107-146 165-198 (509)
408 TIGR01470 cysG_Nterm siroheme 89.9 0.47 1E-05 45.8 4.8 33 108-146 10-42 (205)
409 PLN02568 polyamine oxidase 89.9 7.5 0.00016 43.4 15.0 53 212-283 242-294 (539)
410 TIGR00518 alaDH alanine dehydr 89.8 0.38 8.2E-06 50.9 4.5 34 107-146 167-200 (370)
411 PRK14106 murD UDP-N-acetylmura 89.6 0.42 9.2E-06 52.0 4.8 34 107-146 5-38 (450)
412 PRK06129 3-hydroxyacyl-CoA deh 89.3 0.39 8.5E-06 49.4 4.1 33 109-147 4-36 (308)
413 KOG0404 Thioredoxin reductase 89.3 1.3 2.9E-05 42.5 7.1 98 108-286 158-256 (322)
414 KOG2403 Succinate dehydrogenas 89.1 0.55 1.2E-05 50.8 4.9 41 106-152 54-94 (642)
415 PF13241 NAD_binding_7: Putati 88.9 0.31 6.6E-06 41.4 2.4 34 107-146 7-40 (103)
416 PF13738 Pyr_redox_3: Pyridine 88.8 0.43 9.3E-06 45.4 3.7 34 107-146 167-200 (203)
417 COG0686 Ald Alanine dehydrogen 88.4 0.37 7.9E-06 48.5 2.9 35 106-146 167-201 (371)
418 TIGR01316 gltA glutamate synth 88.4 0.53 1.1E-05 51.3 4.5 111 108-286 273-388 (449)
419 PF13478 XdhC_C: XdhC Rossmann 88.4 0.48 1E-05 42.4 3.5 32 110-147 1-32 (136)
420 PRK06719 precorrin-2 dehydroge 88.4 0.67 1.4E-05 42.6 4.5 31 107-143 13-43 (157)
421 COG1004 Ugd Predicted UDP-gluc 88.3 0.53 1.1E-05 49.2 4.1 33 109-147 2-34 (414)
422 PRK05708 2-dehydropantoate 2-r 88.2 0.6 1.3E-05 48.0 4.5 33 108-146 3-35 (305)
423 cd00401 AdoHcyase S-adenosyl-L 88.1 0.57 1.2E-05 50.0 4.4 34 107-146 202-235 (413)
424 PRK12831 putative oxidoreducta 87.9 0.58 1.3E-05 51.2 4.4 112 107-286 281-397 (464)
425 KOG4405 GDP dissociation inhib 87.8 0.58 1.3E-05 48.7 4.0 41 106-152 7-47 (547)
426 PLN02529 lysine-specific histo 87.4 19 0.00041 41.7 16.3 37 414-453 562-598 (738)
427 PRK06718 precorrin-2 dehydroge 87.4 0.81 1.8E-05 44.0 4.6 33 107-145 10-42 (202)
428 PRK08293 3-hydroxybutyryl-CoA 87.4 0.66 1.4E-05 47.2 4.2 32 109-146 5-36 (287)
429 PF01488 Shikimate_DH: Shikima 87.1 1 2.3E-05 40.2 4.8 34 107-146 12-46 (135)
430 PRK06249 2-dehydropantoate 2-r 87.0 0.84 1.8E-05 47.1 4.8 33 108-146 6-38 (313)
431 PRK08229 2-dehydropantoate 2-r 86.7 0.81 1.8E-05 47.7 4.6 32 108-145 3-34 (341)
432 PRK09260 3-hydroxybutyryl-CoA 86.7 0.72 1.6E-05 47.0 4.0 32 109-146 3-34 (288)
433 PF09257 BCMA-Tall_bind: BCMA, 86.5 0.036 7.8E-07 36.0 -3.4 32 549-590 7-38 (39)
434 PLN02328 lysine-specific histo 86.3 12 0.00027 43.5 14.1 38 415-455 644-681 (808)
435 PRK07066 3-hydroxybutyryl-CoA 86.2 0.85 1.8E-05 47.2 4.2 32 109-146 9-40 (321)
436 COG5044 MRS6 RAB proteins gera 86.0 1.1 2.4E-05 46.3 4.8 39 107-151 6-44 (434)
437 PRK07530 3-hydroxybutyryl-CoA 86.0 1 2.3E-05 45.9 4.8 33 108-146 5-37 (292)
438 TIGR00561 pntA NAD(P) transhyd 85.8 0.94 2E-05 49.6 4.5 34 107-146 164-197 (511)
439 PRK06522 2-dehydropantoate 2-r 85.7 0.87 1.9E-05 46.5 4.2 32 109-146 2-33 (304)
440 TIGR02354 thiF_fam2 thiamine b 85.7 1.2 2.6E-05 42.7 4.8 34 106-145 20-54 (200)
441 PRK07819 3-hydroxybutyryl-CoA 85.6 0.86 1.9E-05 46.4 4.0 33 109-147 7-39 (286)
442 PRK12921 2-dehydropantoate 2-r 85.6 0.95 2.1E-05 46.3 4.4 30 109-144 2-31 (305)
443 PRK06035 3-hydroxyacyl-CoA deh 85.5 0.9 2E-05 46.3 4.1 32 109-146 5-36 (291)
444 cd05292 LDH_2 A subgroup of L- 85.5 1 2.3E-05 46.3 4.5 33 109-147 2-36 (308)
445 PF00899 ThiF: ThiF family; I 85.0 1.5 3.2E-05 39.0 4.8 33 108-146 3-36 (135)
446 PRK05808 3-hydroxybutyryl-CoA 84.5 1 2.3E-05 45.6 4.0 32 109-146 5-36 (282)
447 cd01080 NAD_bind_m-THF_DH_Cycl 84.5 1.4 3.1E-05 40.9 4.5 34 106-145 43-77 (168)
448 PRK04148 hypothetical protein; 83.8 0.9 1.9E-05 40.4 2.7 33 108-147 18-50 (134)
449 PRK10669 putative cation:proto 83.7 1.7 3.6E-05 48.8 5.5 36 106-147 416-451 (558)
450 TIGR01763 MalateDH_bact malate 83.3 1.7 3.6E-05 44.8 4.9 32 109-146 3-35 (305)
451 TIGR00936 ahcY adenosylhomocys 83.2 1.4 3E-05 47.0 4.4 34 107-146 195-228 (406)
452 PRK12549 shikimate 5-dehydroge 83.1 1.6 3.4E-05 44.4 4.6 33 108-146 128-161 (284)
453 COG0493 GltD NADPH-dependent g 82.6 2.2 4.8E-05 46.3 5.7 117 108-286 263-386 (457)
454 PRK08306 dipicolinate synthase 82.3 1.7 3.6E-05 44.5 4.4 34 107-146 152-185 (296)
455 cd05311 NAD_bind_2_malic_enz N 82.2 1.8 4E-05 42.4 4.5 34 107-146 25-61 (226)
456 PRK12475 thiamine/molybdopteri 81.7 2 4.3E-05 44.8 4.8 34 107-146 24-58 (338)
457 TIGR03026 NDP-sugDHase nucleot 81.4 1.5 3.2E-05 47.1 3.9 33 109-147 2-34 (411)
458 PRK05476 S-adenosyl-L-homocyst 81.3 1.9 4.2E-05 46.2 4.5 34 107-146 212-245 (425)
459 TIGR02356 adenyl_thiF thiazole 81.1 2.4 5.3E-05 40.7 4.8 35 106-146 20-55 (202)
460 PRK06130 3-hydroxybutyryl-CoA 81.1 2 4.3E-05 44.2 4.6 32 109-146 6-37 (311)
461 PRK06223 malate dehydrogenase; 80.9 2.2 4.7E-05 43.9 4.7 34 108-147 3-37 (307)
462 PRK07688 thiamine/molybdopteri 80.8 2.2 4.9E-05 44.5 4.8 35 106-146 23-58 (339)
463 PRK02472 murD UDP-N-acetylmura 80.7 1.9 4E-05 46.9 4.4 32 109-146 7-38 (447)
464 PRK03369 murD UDP-N-acetylmura 80.5 2 4.3E-05 47.3 4.5 32 108-145 13-44 (488)
465 PRK14620 NAD(P)H-dependent gly 80.4 2.1 4.5E-05 44.4 4.5 32 109-146 2-33 (326)
466 PRK14618 NAD(P)H-dependent gly 80.3 2.4 5.2E-05 44.0 4.9 32 109-146 6-37 (328)
467 PRK15116 sulfur acceptor prote 80.3 2.6 5.6E-05 42.4 4.8 35 106-146 29-64 (268)
468 TIGR02964 xanthine_xdhC xanthi 80.0 2.3 5.1E-05 42.2 4.4 36 106-147 99-134 (246)
469 PRK11064 wecC UDP-N-acetyl-D-m 79.9 1.9 4.1E-05 46.4 4.0 34 108-147 4-37 (415)
470 PTZ00082 L-lactate dehydrogena 79.8 2.7 5.9E-05 43.5 5.0 34 108-147 7-41 (321)
471 PF00056 Ldh_1_N: lactate/mala 79.8 3 6.4E-05 37.6 4.7 34 109-146 2-36 (141)
472 COG1748 LYS9 Saccharopine dehy 79.6 2.3 4.9E-05 45.0 4.3 33 108-146 2-35 (389)
473 PLN02494 adenosylhomocysteinas 79.4 2.4 5.3E-05 45.8 4.6 34 107-146 254-287 (477)
474 PLN02353 probable UDP-glucose 79.3 2.1 4.7E-05 46.7 4.3 35 109-147 3-37 (473)
475 cd01339 LDH-like_MDH L-lactate 79.1 2.3 4.9E-05 43.6 4.2 31 110-146 1-32 (300)
476 PLN02545 3-hydroxybutyryl-CoA 79.0 2.6 5.6E-05 43.0 4.6 32 109-146 6-37 (295)
477 PRK12548 shikimate 5-dehydroge 78.8 2.7 5.9E-05 42.8 4.6 33 108-146 127-160 (289)
478 COG4716 Myosin-crossreactive a 78.5 1 2.2E-05 46.5 1.3 42 107-150 22-63 (587)
479 PRK07531 bifunctional 3-hydrox 78.4 2.5 5.4E-05 46.6 4.5 32 109-146 6-37 (495)
480 PRK14619 NAD(P)H-dependent gly 78.4 3 6.6E-05 42.8 4.9 33 108-146 5-37 (308)
481 COG1063 Tdh Threonine dehydrog 78.3 2.5 5.4E-05 44.3 4.3 32 109-146 171-203 (350)
482 PRK00094 gpsA NAD(P)H-dependen 78.3 2.7 5.9E-05 43.3 4.5 32 109-146 3-34 (325)
483 cd01483 E1_enzyme_family Super 78.3 3.5 7.6E-05 37.0 4.7 32 109-146 1-33 (143)
484 PRK00066 ldh L-lactate dehydro 78.2 3.3 7.3E-05 42.7 5.1 34 107-146 6-41 (315)
485 PRK05562 precorrin-2 dehydroge 78.2 2.9 6.3E-05 40.7 4.3 33 107-145 25-57 (223)
486 cd01487 E1_ThiF_like E1_ThiF_l 78.2 3.3 7.1E-05 38.7 4.6 32 109-146 1-33 (174)
487 PRK04308 murD UDP-N-acetylmura 78.2 2.8 6E-05 45.6 4.7 34 108-147 6-39 (445)
488 PRK01710 murD UDP-N-acetylmura 77.8 2.7 5.9E-05 45.8 4.5 33 108-146 15-47 (458)
489 cd05291 HicDH_like L-2-hydroxy 77.7 3 6.5E-05 42.9 4.6 33 109-147 2-36 (306)
490 TIGR02853 spore_dpaA dipicolin 77.4 2.9 6.3E-05 42.5 4.3 34 107-146 151-184 (287)
491 COG1086 Predicted nucleoside-d 77.3 5 0.00011 44.0 6.2 61 107-171 116-177 (588)
492 PRK04690 murD UDP-N-acetylmura 76.7 2.9 6.2E-05 45.8 4.4 33 108-146 9-41 (468)
493 cd01078 NAD_bind_H4MPT_DH NADP 76.6 3.9 8.5E-05 38.8 4.8 33 107-145 28-61 (194)
494 PRK07417 arogenate dehydrogena 76.4 3 6.5E-05 42.2 4.1 32 109-146 2-33 (279)
495 PRK08644 thiamine biosynthesis 76.2 4.1 8.8E-05 39.5 4.8 35 106-146 27-62 (212)
496 cd01075 NAD_bind_Leu_Phe_Val_D 76.1 3.9 8.5E-05 39.2 4.6 32 108-145 29-60 (200)
497 PF00670 AdoHcyase_NAD: S-aden 76.0 3.3 7.1E-05 38.1 3.8 34 107-146 23-56 (162)
498 PRK09496 trkA potassium transp 76.0 2.9 6.2E-05 45.4 4.1 32 109-146 2-33 (453)
499 TIGR02355 moeB molybdopterin s 75.7 4.1 8.9E-05 40.3 4.7 34 107-146 24-58 (240)
500 PRK05690 molybdopterin biosynt 75.5 4.2 9.1E-05 40.3 4.7 35 106-146 31-66 (245)
No 1
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=3.2e-124 Score=925.99 Aligned_cols=491 Identities=65% Similarity=1.097 Sum_probs=478.3
Q ss_pred ccccccccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeee
Q 007716 100 EMCRESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRV 179 (592)
Q Consensus 100 ~~~~~~~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~ 179 (592)
.|+|+..++||+|||||||||+|||+|+|++++.+..++|||+||..++|+|+++|++|+|.+++||+|+|++..+|+.+
T Consensus 69 ~~~R~~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL~P~wke~~apl~t 148 (621)
T KOG2415|consen 69 NMERESEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDELLPDWKEDGAPLNT 148 (621)
T ss_pred cchhhhccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhhCcchhhcCCcccc
Confidence 46778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCcEEEeecCCcccCCC--CCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCccc
Q 007716 180 PVSSDKFWFLTKDRAFSLPS--PFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIA 257 (592)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~ 257 (592)
.++.+.+++++....+.+|. +|.|+++|+++.+.+.+||.++||+.||+|++++++.++.+++||.|.||.|+|+|+.
T Consensus 149 ~vT~d~~~fLt~~~~i~vPv~~pm~NhGNYvv~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~ 228 (621)
T KOG2415|consen 149 PVTSDKFKFLTGKGRISVPVPSPMDNHGNYVVSLGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGIS 228 (621)
T ss_pred cccccceeeeccCceeecCCCcccccCCcEEEEHHHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeecccccc
Confidence 99999999999988887765 8999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeeEEEEEeecCCCCCCCcEEEEeccCCC
Q 007716 258 KDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLD 337 (592)
Q Consensus 258 ~~G~~~~~f~~g~~i~a~~vI~A~G~~s~vr~~l~~~~~l~~~~~~~~~~~~~g~~~~~~i~~~~~~~g~~~~~~~~~~~ 337 (592)
+||.+|++|++|++++|+.+|+|+|+|+++.+|++++|+++ ....+|+||+|++++|+++++++.+|.+.|++|||++
T Consensus 229 k~G~pKd~FerGme~hak~TifAEGc~G~Lskqi~kkf~Lr--~n~e~qtYglGlKEvWei~~~~~~pG~v~HT~GwPl~ 306 (621)
T KOG2415|consen 229 KDGAPKDTFERGMEFHAKVTIFAEGCHGSLSKQIIKKFDLR--ENCEPQTYGLGLKEVWEIDPENHNPGEVAHTLGWPLD 306 (621)
T ss_pred CCCCccccccccceecceeEEEeccccchhHHHHHHHhCcc--cCCCcceeccccceeEecChhhcCCcceeeeccCccc
Confidence 99999999999999999999999999999999999999999 5889999999999999999999999999999999999
Q ss_pred CCCcceEEEEEcCCCeEEEEEEecccCCCCCCCcHHHHHHhhcCccccccccCCceeeecceeeecCCccccCcccCCCE
Q 007716 338 QKTYGGSFLYHMNDRQIALGLVVALNYHNPFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGG 417 (592)
Q Consensus 338 ~~~~g~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~l~~~~~~~~~~~~i~~gg~~~~p~~~~~~v 417 (592)
.++|||+|+|+++++.+.+|+++.+||.||+++|+.|||++|+||.+++.+++++++.|++|++++||+|++|++++|+.
T Consensus 307 ~~tYGGsFlYh~~d~~VavGlVVgLdY~NP~lsP~~EFQk~K~hP~i~~vleGgk~i~YgARaLNEGGfQsiPkl~FPGG 386 (621)
T KOG2415|consen 307 NDTYGGSFLYHFNDPLVAVGLVVGLDYKNPYLSPYKEFQKMKHHPSISKVLEGGKRIAYGARALNEGGFQSIPKLVFPGG 386 (621)
T ss_pred CCccCceeEEEcCCCeEEEEEEEEecCCCCCCCHHHHHHHhhcCcchhhhhcCcceeeehhhhhccCCcccCcccccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCcccCCCCccchHHHHHHHHHHHHHHhhhccCC-------chHHHHHHHHHHhHHHHHHHHHHcchhhhh--hc
Q 007716 418 AIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHED-------SNMEIYWDTLQKSWVWQELQRARNYRPAFE--YG 488 (592)
Q Consensus 418 ~LiGDAA~~~~P~~g~G~~~Am~dg~~aA~~l~~~~~~~-------~~l~~Y~~~~~~~~~~~~l~~~r~~~~~~~--~g 488 (592)
+||||+||+||....+|.|+||+||+++||+|++++... ..+..|++.++++|+++||+.+||+|+.|+ .|
T Consensus 387 ~liGcSaGFlNVpKIKGTHtAMKSGmlAAesif~ai~~~~~~k~~~~~~~~Ye~nlkds~V~KeLysvRNirPsf~~~lG 466 (621)
T KOG2415|consen 387 ALIGCSAGFLNVPKIKGTHTAMKSGMLAAESIFEAIKGLPQSKMAGLDPTTYEENLKDSYVWKELYSVRNIRPSFHGKLG 466 (621)
T ss_pred eEeecccccccccccccchhhhhcchhHHHHHHHHHhcCccccccccChhhHHHhhhhhHHHHHHHHhhccCcccccccc
Confidence 999999999999999999999999999999999998552 236699999999999999999999999997 89
Q ss_pred chHHHHHHHHHHHHccCCCCccccCCCCCcccchhhhcCCCCCCCCCCCcccccccccccccCCCCCCCCCCcEEecCCC
Q 007716 489 LLPGLAICGLEHYILRGKSPYTLKHGKPDHEATDAARLHSPIEYPKPDGVLSFDVPTSLHRSNTNHEHDQPAHLRLRDPK 568 (592)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~d~~~~~~~~~~~~~~y~~pd~~l~~d~~~~~~~~~~~h~~~~~~h~~~~~~~ 568 (592)
.|.||+++++..++.+|+.||||+|++.|++.+.++++|+||+||||||+||||.+|||++|||||+|||||||+++|++
T Consensus 467 ~ygGmiySgi~~~~lkG~~PwTLkh~~~D~e~l~pa~k~~pI~YPKPDg~lSFDlltSvs~sgTnH~~dqP~HL~l~~~~ 546 (621)
T KOG2415|consen 467 LYGGMIYSGIFSYVLKGKVPWTLKHGKNDHEALKPASKYKPIVYPKPDGVLSFDLLTSVSRSGTNHDEDQPAHLTLRDDD 546 (621)
T ss_pred cccchhhhhhHHHhhcCccceeeccCCCchhhccchhhCCCcccCCCCceEEEeecchhhccCCCCCCCCCceeeecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCccCccCccccccCCCcCC
Q 007716 569 IPELVNLPEYAGPESRYCPARVYE 592 (592)
Q Consensus 569 ~~~~~~~~~~~~~~~~~cp~~vy~ 592 (592)
+|+++|+++|++||+|||||||||
T Consensus 547 ip~~~nf~~y~gpE~rfCPAgVYE 570 (621)
T KOG2415|consen 547 IPVKVNFPVYKGPESRFCPAGVYE 570 (621)
T ss_pred cchhcCcccccChhhccCCcccee
Confidence 999999999999999999999998
No 2
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=100.00 E-value=3.2e-44 Score=382.27 Aligned_cols=392 Identities=36% Similarity=0.569 Sum_probs=311.2
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCc
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDK 185 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~ 185 (592)
|+|||+||||||||++||+.|++. |++|+|+||+.++|.+..+|+.+.+..++++.+.+... +...+....
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~------G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~---i~~~v~~~~ 72 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKA------GLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEE---IERKVTGAR 72 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHc------CCeEEEEecCCCCCCCccccceechhhHHHhCCCcchh---hheeeeeeE
Confidence 679999999999999999999999 99999999999999999999999999999999888753 444455555
Q ss_pred EEEeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccc
Q 007716 186 FWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKEN 265 (592)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~ 265 (592)
+++......+..+. ..+|+++|..+.+||.++|++.|++++.++++.++..++++.+.++...+
T Consensus 73 ~~~~~~~~~~~~~~----~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~------------ 136 (396)
T COG0644 73 IYFPGEKVAIEVPV----GEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGD------------ 136 (396)
T ss_pred EEecCCceEEecCC----CceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCC------------
Confidence 55442222222221 44899999999999999999999999999999999999877665554432
Q ss_pred cccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeeEEEEEeecCCCCCCCcEEEEeccCCCCCCcceEE
Q 007716 266 FQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGGSF 345 (592)
Q Consensus 266 f~~g~~i~a~~vI~A~G~~s~vr~~l~~~~~l~~~~~~~~~~~~~g~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~g~~~ 345 (592)
.+++||+||+|||++|.+++.+ ++. ...++.+++++++.+.++ ..+...+++.++......|++|
T Consensus 137 ----~e~~a~~vI~AdG~~s~l~~~l----g~~---~~~~~~~~~~~~e~~~~~----~~~~~~~~~~~~~~~~~~Gy~w 201 (396)
T COG0644 137 ----DEVRAKVVIDADGVNSALARKL----GLK---DRKPEDYAIGVKEVIEVP----DDGDVEEFLYGPLDVGPGGYGW 201 (396)
T ss_pred ----EEEEcCEEEECCCcchHHHHHh----CCC---CCChhheeEEeEEEEecC----CCCceEEEEecCCccCCCceEE
Confidence 7999999999999999999877 443 245778899999998887 3456777777776666778999
Q ss_pred EEEcCCCeEEEEEEecccCCCCCCCcH-HHHHHhhcCccccccccCCceeeecceeeecCCccccCcccCCCEEEEcCCC
Q 007716 346 LYHMNDRQIALGLVVALNYHNPFLNPY-EEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIGCAA 424 (592)
Q Consensus 346 ~~~~~~~~~~vg~~~~~~~~~~~~~~~-~~~~~~~~~p~i~~~l~~~~~~~~~~~~i~~gg~~~~p~~~~~~v~LiGDAA 424 (592)
+||.+++.++||++...+. +...+. +.+++|+.||.+.+.+.+++.+++.++.+|.++....| +..+|+++|||||
T Consensus 202 ifP~~~~~~~VG~g~~~~~--~~~~~~~~~l~~f~~~~~~~~~~~~~~~~~~~~~~ip~~g~~~~~-~~~~~~~lvGDAA 278 (396)
T COG0644 202 IFPLGDGHANVGIGVLLDD--PSLSPFLELLERFKEHPAIRKLLLGGKILEYAAGGIPEGGPASRP-LVGDGVLLVGDAA 278 (396)
T ss_pred EEECCCceEEEEEEEecCC--cCCCchHHHHHHHHhCcccchhccCCceEEEeeeecccCCcCCCc-cccCCEEEEeccc
Confidence 9999999999999988766 445555 88899999999998888889999999999999998877 8999999999999
Q ss_pred cccCCCCccchHHHHHHHHHHHHHHhhhccC-CchHHHHHHHHHHhHHHHHHHHHHcchhhhhhcchHHHHHHHHHHHHc
Q 007716 425 GFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE-DSNMEIYWDTLQKSWVWQELQRARNYRPAFEYGLLPGLAICGLEHYIL 503 (592)
Q Consensus 425 ~~~~P~~g~G~~~Am~dg~~aA~~l~~~~~~-~~~l~~Y~~~~~~~~~~~~l~~~r~~~~~~~~g~~~~~~~~~~~~~~~ 503 (592)
++++|++|.|++.||.+|++||++|.+++.. ...|..|++.+++++..+.++..+..+.+++ ++...+...+..+..
T Consensus 279 g~v~p~~g~Gi~~A~~sg~~Aa~~i~~~~~~~~~~l~~Y~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 356 (396)
T COG0644 279 GFVNPLTGEGIRYAIKSGKLAAEAIAEALEGGEEALAEYERLLRKSLAREDLKSLRLLKLLLR--LLDRTLPALIKLLAD 356 (396)
T ss_pred cCCCCcccCcHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHhhhhhhHHh--HhhhhHHHHHHHHhc
Confidence 9999999999999999999999999998755 3578889999999988888777777776665 222232333332211
Q ss_pred cCCCCccccCCCCCcccchhhhcCCCCCCCCCCCccc-ccccccccccCCCC
Q 007716 504 RGKSPYTLKHGKPDHEATDAARLHSPIEYPKPDGVLS-FDVPTSLHRSNTNH 554 (592)
Q Consensus 504 ~~~~p~~~~~~~~d~~~~~~~~~~~~~~y~~pd~~l~-~d~~~~~~~~~~~h 554 (592)
.+...+........+.++.+...++ ++.+.+++++.+.|
T Consensus 357 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 396 (396)
T COG0644 357 ------------KDLLGLIKKYLRKLILYPLLKGVLARFDLLKSVKRSLTAL 396 (396)
T ss_pred ------------cccccccchhhhhhhHHHhhhccccHHHHHHHHHHHHhcC
Confidence 1222222233455677777776666 88888887776654
No 3
>PRK10015 oxidoreductase; Provisional
Probab=100.00 E-value=1e-41 Score=365.68 Aligned_cols=367 Identities=29% Similarity=0.500 Sum_probs=294.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcE
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~ 186 (592)
+||||||||||||++||+.|++. |++|+||||...+|....+|+.+....+.++++.+.. ..++...+..+.+
T Consensus 5 ~~DViIVGgGpAG~~aA~~LA~~------G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~-~~~i~~~~~~~~~ 77 (429)
T PRK10015 5 KFDAIVVGAGVAGSVAALVMARA------GLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAA-SAPVERKVTREKI 77 (429)
T ss_pred ccCEEEECcCHHHHHHHHHHHhC------CCeEEEEecCCCCCcccccCceeecccHHHHcccccc-cCCccccccceeE
Confidence 59999999999999999999999 9999999999988877678888887777777765432 2344445555556
Q ss_pred EEeecCCcccCC--CC---CCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCC
Q 007716 187 WFLTKDRAFSLP--SP---FSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGS 261 (592)
Q Consensus 187 ~~~~~~~~~~~~--~~---~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~ 261 (592)
+++..+....+. .. ......|.+.|..|.++|.+++++.|++++.++.|+++..++ +.+.+|.+.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~-~~v~~v~~~~-------- 148 (429)
T PRK10015 78 SFLTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREG-NKVTGVQAGD-------- 148 (429)
T ss_pred EEEeCCCceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeC-CEEEEEEeCC--------
Confidence 665544332222 11 112347899999999999999999999999999999988765 5566666543
Q ss_pred cccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeeEEEEEeecCCCC--------CCCcEEEEec
Q 007716 262 KKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKH--------NPGEILHTLG 333 (592)
Q Consensus 262 ~~~~f~~g~~i~a~~vI~A~G~~s~vr~~l~~~~~l~~~~~~~~~~~~~g~~~~~~i~~~~~--------~~g~~~~~~~ 333 (592)
.+++||+||+|+|.+|.+++++ ++. ....+..+..++++.+.++.... ..|..++.++
T Consensus 149 --------~~i~A~~VI~AdG~~s~v~~~l----g~~--~~~~~~~~~~gvk~~~~~~~~~i~~~~~~~~~~g~~w~~~g 214 (429)
T PRK10015 149 --------DILEANVVILADGVNSMLGRSL----GMV--PASDPHHYAVGVKEVIGLTPEQINDRFNITGEEGAAWLFAG 214 (429)
T ss_pred --------eEEECCEEEEccCcchhhhccc----CCC--cCCCcCeEEEEEEEEEeCCHHHhhHhhcCCCCCCeEEEecC
Confidence 6899999999999999988754 554 23456777889998877653321 2356677777
Q ss_pred cCCCCCCcceEEEEEcCCCeEEEEEEeccc-CCCCCCCcHHHHHHhhcCccccccccCCceeeecceeeecCCccccCcc
Q 007716 334 WPLDQKTYGGSFLYHMNDRQIALGLVVALN-YHNPFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYP 412 (592)
Q Consensus 334 ~~~~~~~~g~~~~~~~~~~~~~vg~~~~~~-~~~~~~~~~~~~~~~~~~p~i~~~l~~~~~~~~~~~~i~~gg~~~~p~~ 412 (592)
++. .+.+|++|+|+..+ .++||++.... +.+...++.+.+++|+.||.+++++++++.+++.++.+|.+|+..+|++
T Consensus 215 ~~~-~g~~g~G~~~~~~d-~v~vGv~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~e~~~~~ip~gg~~~~~~~ 292 (429)
T PRK10015 215 SPS-DGLMGGGFLYTNKD-SISLGLVCGLGDIAHAQKSVPQMLEDFKQHPAIRPLISGGKLLEYSAHMVPEGGLAMVPQL 292 (429)
T ss_pred ccC-CCCCCceEEEEcCC-cEEEEEEEehhhhccCCCCHHHHHHHHhhChHHHHHhcCCEEEEEeeEEcccCCcccCCcc
Confidence 775 45678899999865 79999976543 3344567888889999999999999999999999999999999889999
Q ss_pred cCCCEEEEcCCCcccCC--CCccchHHHHHHHHHHHHHHhhhccC----CchHHHHHHHHHHhHHHHHHHHHHcchhhhh
Q 007716 413 VFPGGAIIGCAAGFLNV--PKIKGTHTAMKSGMLAAEAGFGVLHE----DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (592)
Q Consensus 413 ~~~~v~LiGDAA~~~~P--~~g~G~~~Am~dg~~aA~~l~~~~~~----~~~l~~Y~~~~~~~~~~~~l~~~r~~~~~~~ 486 (592)
+.+|+++|||||++++| ++|+|+++||.||.+||+++.+++.. ...|..|++.++++|+.++|+..+++..+|.
T Consensus 293 ~~~g~llvGDAAg~v~p~~~~g~Gi~~A~~SG~~AAe~i~~a~~~~d~s~~~l~~Y~~~~~~~~~~~~l~~~~~~~~~~~ 372 (429)
T PRK10015 293 VNDGVMIVGDAAGFCLNLGFTVRGMDLAIASAQAAATTVIAAKERADFSASSLAQYKRELEQSCVMRDMQHFRKIPALME 372 (429)
T ss_pred ccCCeEEEecccccccccCccccchhHHHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHCHHHHHHHHHhChHhhhc
Confidence 99999999999999985 69999999999999999999998764 3568999999999999999999999999984
Q ss_pred ----hcchHHHHHHHHHHHHccC
Q 007716 487 ----YGLLPGLAICGLEHYILRG 505 (592)
Q Consensus 487 ----~g~~~~~~~~~~~~~~~~~ 505 (592)
...|+.++...+..++...
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~ 395 (429)
T PRK10015 373 NPRLFSQYPRMVADIMNDMFTID 395 (429)
T ss_pred CccHHHHHHHHHHHHHHHhcccC
Confidence 4678999999998887643
No 4
>PF05187 ETF_QO: Electron transfer flavoprotein-ubiquinone oxidoreductase; InterPro: IPR007859 Electron-transfer flavoprotein-ubiquinone oxidoreductase (ETF-QO) in the inner mitochondrial membrane accepts electrons from electron-transfer flavoprotein which is located in the mitochondrial matrix and reduces ubiquinone in the mitochondrial membrane. The two redox centres in the protein, FAD and a [4Fe4S] cluster, are present in a 64 kDa monomer [].; GO: 0004174 electron-transferring-flavoprotein dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 2GMJ_B 2GMH_B.
Probab=100.00 E-value=6.9e-45 Score=304.21 Aligned_cols=105 Identities=61% Similarity=1.077 Sum_probs=72.6
Q ss_pred cchHHHHHHHHHHHHccCCCCccccCCCCCcccchhhhcCCCCCCCCCCCcccccccccccccCCCCCCCCCCcEEecCC
Q 007716 488 GLLPGLAICGLEHYILRGKSPYTLKHGKPDHEATDAARLHSPIEYPKPDGVLSFDVPTSLHRSNTNHEHDQPAHLRLRDP 567 (592)
Q Consensus 488 g~~~~~~~~~~~~~~~~~~~p~~~~~~~~d~~~~~~~~~~~~~~y~~pd~~l~~d~~~~~~~~~~~h~~~~~~h~~~~~~ 567 (592)
|+|.|+++.++++++++|+.||++++.++|++.+++++.+++|+||||||+||||+++|||+|||+|||||||||+|+|+
T Consensus 1 G~~~G~~~~g~~~~~~~g~~p~tl~~~~~D~~~l~~a~~~~~i~YpKpDg~ltFDklssv~~SgT~HeEdQP~HL~l~d~ 80 (110)
T PF05187_consen 1 GLYGGLAYSGLDQNLLKGRAPWTLKHKKPDHESLKPASKCKPIDYPKPDGKLTFDKLSSVYLSGTNHEEDQPCHLKLKDP 80 (110)
T ss_dssp HHHHHHHHHHHHTTTTTT--S------S-GGGG---GGGS---------SSSS--HHHHHHTTT-B--SSS--SEEESST
T ss_pred ChHHHHHHHHHHHHHccCCCCcccCCCCccHHHHhHHHhcccCCCCCCCCCCccccccceeccccCCCCCCCCeeEECCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCccCccCccccccCCCcCC
Q 007716 568 KIPELVNLPEYAGPESRYCPARVYE 592 (592)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~cp~~vy~ 592 (592)
++|+++|+++|++||||||||||||
T Consensus 81 ~i~~~~~~~~y~~P~qryCPAgVYE 105 (110)
T PF05187_consen 81 EIPIEVNLPEYGGPEQRYCPAGVYE 105 (110)
T ss_dssp THHHHTHHHHHS-THHHH-TTS-EE
T ss_pred ChhhhhhhhhhcChhhhcCcceeEE
Confidence 9999999999999999999999998
No 5
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=100.00 E-value=1.9e-39 Score=348.60 Aligned_cols=366 Identities=27% Similarity=0.475 Sum_probs=287.9
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCc
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDK 185 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~ 185 (592)
+.||||||||||||++||+.|++. |++|+||||...+|....+|+.+....++++++.+... .++...+..+.
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~------G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~-~~~~~~~~~~~ 76 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLARE------GAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADS-APVERLITHEK 76 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhC------CCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhc-Ccccceeeeee
Confidence 359999999999999999999999 99999999999888877788888888888887765432 33332233333
Q ss_pred EEEeecCCcccCCC--C---CCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCC
Q 007716 186 FWFLTKDRAFSLPS--P---FSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDG 260 (592)
Q Consensus 186 ~~~~~~~~~~~~~~--~---~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G 260 (592)
+.+......+.+.. . ......|.+.|..|.++|.+++++.|++|+.+++|++++.++ +.+++|.+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~-g~v~~v~~~-------- 147 (428)
T PRK10157 77 LAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRD-GKVVGVEAD-------- 147 (428)
T ss_pred EEEEcCCCceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeC-CEEEEEEcC--------
Confidence 44444333222211 1 112246889999999999999999999999999999998765 556555532
Q ss_pred CcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeeEEEEEeecCCC--------CCCCcEEEEe
Q 007716 261 SKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGK--------HNPGEILHTL 332 (592)
Q Consensus 261 ~~~~~f~~g~~i~a~~vI~A~G~~s~vr~~l~~~~~l~~~~~~~~~~~~~g~~~~~~i~~~~--------~~~g~~~~~~ 332 (592)
|.+++||+||+|+|.+|.+++++ ++.. ...+....+++++.++++... ...|...++.
T Consensus 148 --------g~~i~A~~VI~A~G~~s~l~~~l----gl~~--~~~~~~~av~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 213 (428)
T PRK10157 148 --------GDVIEAKTVILADGVNSILAEKL----GMAK--RVKPTDVAVGVKELIELPKSVIEDRFQLQGNQGAACLFA 213 (428)
T ss_pred --------CcEEECCEEEEEeCCCHHHHHHc----CCCC--CCCCcEEEEEEEEEEEcCHHHHHHhhccCCCCCeEEEEE
Confidence 36899999999999999877754 6652 334566778888877665321 1245667777
Q ss_pred ccCCCCCCcceEEEEEcCCCeEEEEEEecccC-CCCCCCcHHHHHHhhcCccccccccCCceeeecceeeecCCccccCc
Q 007716 333 GWPLDQKTYGGSFLYHMNDRQIALGLVVALNY-HNPFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPY 411 (592)
Q Consensus 333 ~~~~~~~~~g~~~~~~~~~~~~~vg~~~~~~~-~~~~~~~~~~~~~~~~~p~i~~~l~~~~~~~~~~~~i~~gg~~~~p~ 411 (592)
+.|. .+.+|++|+|+.. +.++||++...+. .+....+.+.++.|+.+|.+++.++.++.++|.++.+|.+++..+|+
T Consensus 214 g~~~-~g~~ggG~~~~~~-~~~svG~~~~~~~~~~~~~~~~~~l~~~~~~p~v~~~~~~~~~~~~~~~~ip~~g~~~~~~ 291 (428)
T PRK10157 214 GSPT-DGLMGGGFLYTNE-NTLSLGLVCGLHHLHDAKKSVPQMLEDFKQHPAVAPLIAGGKLVEYSAHVVPEAGINMLPE 291 (428)
T ss_pred ECCC-CCCcCceeEEEcC-CeEEEEEEEehHHhcccCCCHHHHHHHHHhCchHHHHhCCCeEHHHHhhHhhcCCcccCCc
Confidence 8774 4578889999875 4899999876653 23345677888889999999999998898999999999999888899
Q ss_pred ccCCCEEEEcCCCcccCC--CCccchHHHHHHHHHHHHHHhhhccCC----chHHHHHHHHHHhHHHHHHHHHHcchhhh
Q 007716 412 PVFPGGAIIGCAAGFLNV--PKIKGTHTAMKSGMLAAEAGFGVLHED----SNMEIYWDTLQKSWVWQELQRARNYRPAF 485 (592)
Q Consensus 412 ~~~~~v~LiGDAA~~~~P--~~g~G~~~Am~dg~~aA~~l~~~~~~~----~~l~~Y~~~~~~~~~~~~l~~~r~~~~~~ 485 (592)
+..+++++|||||++++| +.|+|++.||.+|.+||+++.++++.+ ..|..|++.++++ +.++|+..+++..++
T Consensus 292 ~~~~g~llvGDAAg~v~p~g~~g~Gi~~A~~SG~lAAeai~~a~~~~~~s~~~l~~Y~~~l~~~-~~~~l~~~~~~~~~~ 370 (428)
T PRK10157 292 LVGDGVLIAGDAAGMCMNLGFTIRGMDLAIAAGEAAAKTVLSAMKSDDFSKQKLAEYRQHLESG-PLRDMRMYQKLPAFL 370 (428)
T ss_pred eecCCeEEEecccccccccCceeeeHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHh-HHHHHHHHhccHHHh
Confidence 999999999999999998 599999999999999999999987652 4699999999998 789999999999888
Q ss_pred h----hcchHHHHHHHHHHHHcc
Q 007716 486 E----YGLLPGLAICGLEHYILR 504 (592)
Q Consensus 486 ~----~g~~~~~~~~~~~~~~~~ 504 (592)
+ +..||.++...+..++..
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~ 393 (428)
T PRK10157 371 DNPRMFSGYPELAVGVARDLFTI 393 (428)
T ss_pred cCccHHHHHHHHHHHHHHHheee
Confidence 4 577899999999888764
No 6
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=100.00 E-value=2.3e-31 Score=286.21 Aligned_cols=337 Identities=19% Similarity=0.232 Sum_probs=219.5
Q ss_pred ccccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccC
Q 007716 104 ESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSS 183 (592)
Q Consensus 104 ~~~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~ 183 (592)
..++|||+||||||||++||+.|++. |++|+|+||.... ...+|+.++...++++ ..+.. .....+
T Consensus 36 ~~~~~DViIVGaGPAG~~aA~~LA~~------G~~VlllEr~~~~--~k~cgg~i~~~~l~~l-gl~~~---~~~~~i-- 101 (450)
T PLN00093 36 SGRKLRVAVIGGGPAGACAAETLAKG------GIETFLIERKLDN--AKPCGGAIPLCMVGEF-DLPLD---IIDRKV-- 101 (450)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHhC------CCcEEEEecCCCC--CCCccccccHhHHhhh-cCcHH---HHHHHh--
Confidence 44679999999999999999999999 9999999998642 2347888877666443 11100 000011
Q ss_pred CcEEEeec-CCcccCCCCCCCCCcE--EEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCC-CcEEEEEeccCcc-cC
Q 007716 184 DKFWFLTK-DRAFSLPSPFSNRGNY--VISLSQLVRWLGGKAEELGVEIYPGFAASEILYDAD-NKVIGIGTNDMGI-AK 258 (592)
Q Consensus 184 ~~~~~~~~-~~~~~~~~~~~~~~~~--~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~-g~v~~V~~~d~g~-~~ 258 (592)
..+.+... +..+.++.... ...| +++|..|.++|.++|++.|++++.+ .++++..+++ +..+.|++.+... ..
T Consensus 102 ~~~~~~~p~~~~v~~~~~~~-~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~ 179 (450)
T PLN00093 102 TKMKMISPSNVAVDIGKTLK-PHEYIGMVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSYDSGSG 179 (450)
T ss_pred hhheEecCCceEEEecccCC-CCCeEEEecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEecccccc
Confidence 11122221 11222221111 1233 4899999999999999999999876 4777764321 1222455432100 01
Q ss_pred CCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeeEEEEEeecCC--CCCCCcEEEEeccCC
Q 007716 259 DGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEG--KHNPGEILHTLGWPL 336 (592)
Q Consensus 259 ~G~~~~~f~~g~~i~a~~vI~A~G~~s~vr~~l~~~~~l~~~~~~~~~~~~~g~~~~~~i~~~--~~~~g~~~~~~~~~~ 336 (592)
+|+ +.+++||+||+|||.+|.+++.+ ++. ...+..+++..+.++.. ....+....+++...
T Consensus 180 ~g~-------~~~v~a~~VIgADG~~S~vrr~l----g~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 242 (450)
T PLN00093 180 AGT-------PKTLEVDAVIGADGANSRVAKDI----DAG------DYDYAIAFQERIKIPDDKMEYYEDLAEMYVGDDV 242 (450)
T ss_pred CCC-------ccEEEeCEEEEcCCcchHHHHHh----CCC------CcceeEEEEEEEeCChhhccccCCeEEEEeCCCC
Confidence 122 25899999999999999999976 443 13356677665555542 233445556666555
Q ss_pred CCCCcceEEEEEcCCCeEEEEEEecccCCCCCCCcHHHHHHhhcCccccccccCCceeeecceeeecCCccccCcccCCC
Q 007716 337 DQKTYGGSFLYHMNDRQIALGLVVALNYHNPFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPG 416 (592)
Q Consensus 337 ~~~~~g~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~l~~~~~~~~~~~~i~~gg~~~~p~~~~~~ 416 (592)
.++ +++|+||.++ .+.||+..... . ....+.++.+.. .+...+.+++.+......+|.+ ..+++..+|
T Consensus 243 ~p~--~Y~WifP~g~-~~~VG~g~~~~--~--~~~~~~~~~l~~--~~~~~l~~~~~~~~~~~~ip~~---~~~~~~~~~ 310 (450)
T PLN00093 243 SPD--FYGWVFPKCD-HVAVGTGTVVN--K--PAIKKYQRATRN--RAKDKIAGGKIIRVEAHPIPEH---PRPRRVRGR 310 (450)
T ss_pred CCC--ceEEEEECCC-cEEEEEEEccC--C--CChHHHHHHHHH--HhhhhcCCCeEEEEEEEEcccc---cccceeCCC
Confidence 554 4589999985 57888764321 1 122222222321 1122334455555555556552 345788899
Q ss_pred EEEEcCCCcccCCCCccchHHHHHHHHHHHHHHhhhccC------CchHHHHHHHHHHhHHHHHHHHHHcchhhhh
Q 007716 417 GAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE------DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (592)
Q Consensus 417 v~LiGDAA~~~~P~~g~G~~~Am~dg~~aA~~l~~~~~~------~~~l~~Y~~~~~~~~~~~~l~~~r~~~~~~~ 486 (592)
++|||||||+++|++|+|++.||.+|.+||+++.++++. ...|..|++++++. +.++++....++.+|.
T Consensus 311 vlLvGDAAg~v~P~tGeGI~~Am~sg~~AAe~i~~~~~~g~~~~s~~~L~~Y~~~~~~~-~g~~~~~~~~l~~~~~ 385 (450)
T PLN00093 311 VALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSENGTRMVDEADLREYLRKWDKK-YWPTYKVLDILQKVFY 385 (450)
T ss_pred cEEEeccccCCCccccccHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999987643 24689999999876 7888998888888773
No 7
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=100.00 E-value=2.2e-30 Score=275.86 Aligned_cols=332 Identities=17% Similarity=0.214 Sum_probs=214.9
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHh--hHhhhhcCCCeeeeccCCc
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNEL--LPQWKQEEAPIRVPVSSDK 185 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l--l~~~~~~~~~~~~~~~~~~ 185 (592)
+||+||||||||++||+.|++. |++|+|+||....+. .||+++++..+.++ .+.+... .+ ..
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~------G~~V~llE~~~~~~~--~cg~~i~~~~l~~~g~~~~~~~~------~i--~~ 64 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASA------GIQTFLLERKPDNAK--PCGGAIPLCMVDEFALPRDIIDR------RV--TK 64 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhC------CCcEEEEecCCCCCC--CccccccHhhHhhccCchhHHHh------hh--ce
Confidence 5899999999999999999999 999999999875543 46788877666553 1111110 01 11
Q ss_pred EEEeec-CCcccCCCCCCCCC-cEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcC-CCcEEEEEeccCc-ccCCCC
Q 007716 186 FWFLTK-DRAFSLPSPFSNRG-NYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDA-DNKVIGIGTNDMG-IAKDGS 261 (592)
Q Consensus 186 ~~~~~~-~~~~~~~~~~~~~~-~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~-~g~v~~V~~~d~g-~~~~G~ 261 (592)
..+... ...+.+.......+ .+.++|..|.++|.++|.+.|++++.++ ++++.... .+..++|++.... ....|+
T Consensus 65 ~~~~~p~~~~~~~~~~~~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~ 143 (398)
T TIGR02028 65 MKMISPSNIAVDIGRTLKEHEYIGMLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGT 143 (398)
T ss_pred eEEecCCceEEEeccCCCCCCceeeeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCC
Confidence 122221 11122221111111 2368999999999999999999998885 76665321 1233345543200 001132
Q ss_pred cccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeeEEEEEeecCCC--CCCCcEEEEeccCCCCC
Q 007716 262 KKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGK--HNPGEILHTLGWPLDQK 339 (592)
Q Consensus 262 ~~~~f~~g~~i~a~~vI~A~G~~s~vr~~l~~~~~l~~~~~~~~~~~~~g~~~~~~i~~~~--~~~g~~~~~~~~~~~~~ 339 (592)
..+++||+||+|||.+|.+++++ ++. ...+...+...++++... .....+..+++....++
T Consensus 144 -------~~~i~a~~VIgADG~~S~v~~~~----g~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~ 206 (398)
T TIGR02028 144 -------RCTLEVDAVIGADGANSRVAKEI----DAG------DYSYAIAFQERIRLPDEKMAYYDDLAEMYVGDDVSPD 206 (398)
T ss_pred -------ccEEEeCEEEECCCcchHHHHHh----CCC------CcceEEEEEEEeeCChhhcccCCCeEEEEeCCCCCCC
Confidence 25799999999999999999976 443 123445555555554332 22334444555444454
Q ss_pred CcceEEEEEcCCCeEEEEEEecccCCCCCCCcHHHHHHhhcCccccccccCCceeeecceeeecCCccccCcccCCCEEE
Q 007716 340 TYGGSFLYHMNDRQIALGLVVALNYHNPFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAI 419 (592)
Q Consensus 340 ~~g~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~l~~~~~~~~~~~~i~~gg~~~~p~~~~~~v~L 419 (592)
|++|+||.++ .+.||+.... . ......++.+.... ....+.+++.+......+|.+ ..+++..+|++|
T Consensus 207 --gY~WifP~~~-~~~VG~g~~~--~---~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~ip~~---~~~~~~~~~~ll 274 (398)
T TIGR02028 207 --FYGWVFPKCD-HVAVGTGTVA--A---KPEIKRLQSGIRAR-AAGKVAGGRIIRVEAHPIPEH---PRPRRVVGRVAL 274 (398)
T ss_pred --ceEEEEECCC-eEEEEEEeCC--C---CccHHHHHHhhhhh-hhhccCCCcEEEEEEEecccc---ccccEECCCEEE
Confidence 4589999985 5678875421 1 12233333332211 112233345555544555553 235788899999
Q ss_pred EcCCCcccCCCCccchHHHHHHHHHHHHHHhhhccC------CchHHHHHHHHHHhHHHHHHHHHHcchhhhh
Q 007716 420 IGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE------DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (592)
Q Consensus 420 iGDAA~~~~P~~g~G~~~Am~dg~~aA~~l~~~~~~------~~~l~~Y~~~~~~~~~~~~l~~~r~~~~~~~ 486 (592)
||||||+++|++|+|+++||.||.+||+++.+++.. ...|..|++++++. +.++++....++.+|.
T Consensus 275 vGDAAg~v~P~tGeGI~~A~~sg~~aa~~i~~~~~~~~~~~~~~~l~~Y~~~~~~~-~~~~~~~~~~~~~~~~ 346 (398)
T TIGR02028 275 VGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEESRLGGAVTEEGDLAGYLRRWDKE-YRPTYRVLDLLQRVFY 346 (398)
T ss_pred EEcCCCCCCcccccchHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999988753 24699999999875 7889999998888874
No 8
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=100.00 E-value=3.6e-30 Score=274.05 Aligned_cols=325 Identities=18% Similarity=0.284 Sum_probs=211.1
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHh-h-HhhhhcCCCeeeeccCCc
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNEL-L-PQWKQEEAPIRVPVSSDK 185 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l-l-~~~~~~~~~~~~~~~~~~ 185 (592)
|||+||||||||+++|+.|++. |++|+|+||.. +....+|+.+++..++++ + +.+... .+ ..
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~------G~~V~l~E~~~--~~~~~cg~~i~~~~l~~l~i~~~~~~~------~~--~~ 64 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARA------GIETILLERAL--SNIKPCGGAIPPCLIEEFDIPDSLIDR------RV--TQ 64 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhC------CCcEEEEECCC--CCcCcCcCCcCHhhhhhcCCchHHHhh------hc--ce
Confidence 7999999999999999999999 99999999972 223357888887766544 1 111110 11 12
Q ss_pred EEEeecCC-cccCCCCCCCCCcE--EEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCccc-CCCC
Q 007716 186 FWFLTKDR-AFSLPSPFSNRGNY--VISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIA-KDGS 261 (592)
Q Consensus 186 ~~~~~~~~-~~~~~~~~~~~~~~--~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~-~~G~ 261 (592)
..+...+. .+... +.....| .++|..|.++|.++|.+.|++++.+ .|+++..++++ + .|++.+ |.. .+|+
T Consensus 65 ~~~~~~~~~~~~~~--~~~~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~~-~-~v~~~~-~~~~~~~~ 138 (388)
T TIGR02023 65 MRMISPSRVPIKVT--IPSEDGYVGMVRREVFDSYLRERAQKAGAELIHG-LFLKLERDRDG-V-TLTYRT-PKKGAGGE 138 (388)
T ss_pred eEEEcCCCceeeec--cCCCCCceEeeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcCCe-E-EEEEEe-ccccCCCc
Confidence 22222221 11111 1111234 5899999999999999999999866 58888776643 3 455442 100 1121
Q ss_pred cccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeeEEEEEeecCC--CCCCCcEEEEeccCCCCC
Q 007716 262 KKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEG--KHNPGEILHTLGWPLDQK 339 (592)
Q Consensus 262 ~~~~f~~g~~i~a~~vI~A~G~~s~vr~~l~~~~~l~~~~~~~~~~~~~g~~~~~~i~~~--~~~~g~~~~~~~~~~~~~ 339 (592)
..+++||+||+|||.+|.+++++ ++.. +..+..+++..+.++.. ...++....+++.+..++
T Consensus 139 -------~~~i~a~~VI~AdG~~S~v~r~l----g~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 202 (388)
T TIGR02023 139 -------KGSVEADVVIGADGANSPVAKEL----GLPK-----NLPRVIAYQERIKLPDDKMAYYEELADVYYGGEVSPD 202 (388)
T ss_pred -------ceEEEeCEEEECCCCCcHHHHHc----CCCC-----CCcEEEEEEEEecCCchhcccCCCeEEEEECCCcCCC
Confidence 25799999999999999999865 4431 22344566655544432 123444444555555554
Q ss_pred CcceEEEEEcCCCeEEEEEEecccCCCCCCCcHHHHHHhhcCccccccccCCceeeecceeeecCCccccCcccCCCEEE
Q 007716 340 TYGGSFLYHMNDRQIALGLVVALNYHNPFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAI 419 (592)
Q Consensus 340 ~~g~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~l~~~~~~~~~~~~i~~gg~~~~p~~~~~~v~L 419 (592)
++.|+||.++ .+++|...... .....+.++.+..... ++..+.+......++. ...+++..+++++
T Consensus 203 --~y~wv~P~~~-~~~vg~~~~~~----~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~ip~---~~~~~~~~~~v~l 268 (388)
T TIGR02023 203 --FYGWVFPKGD-HIAVGTGTGTH----GFDAKQLQANLRRRAG----LDGGQTIRREAAPIPM---KPRPRWDFGRAML 268 (388)
T ss_pred --ceEEEeeCCC-eeEEeEEECCC----CCCHHHHHHHHHHhhC----CCCceEeeeeeEeccc---cccccccCCCEEE
Confidence 4589999975 67788754211 1122233333433211 2223333333333443 2446788899999
Q ss_pred EcCCCcccCCCCccchHHHHHHHHHHHHHHhhhccC--CchHHHHHHHHHHhHHHHHHHHHHcchhhh
Q 007716 420 IGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE--DSNMEIYWDTLQKSWVWQELQRARNYRPAF 485 (592)
Q Consensus 420 iGDAA~~~~P~~g~G~~~Am~dg~~aA~~l~~~~~~--~~~l~~Y~~~~~~~~~~~~l~~~r~~~~~~ 485 (592)
||||||+++|++|+|+++||.+|.++|++|.+++.. ...|..|++.+++. +.+++...+.++.++
T Consensus 269 vGDAAg~v~P~tG~GI~~A~~sg~~aa~~i~~~l~~~~~~~L~~Y~~~~~~~-~~~~~~~~~~~~~~~ 335 (388)
T TIGR02023 269 VGDAAGLVTPASGEGIYFAMKSGQMAAQAIAEYLQNGDATDLRHYERKFMKL-YGTTFRVLRVLQMVY 335 (388)
T ss_pred EeccccCcCCcccccHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998754 35699999999976 667776665555554
No 9
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.97 E-value=1.4e-29 Score=258.88 Aligned_cols=293 Identities=24% Similarity=0.283 Sum_probs=196.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcEE
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~~ 187 (592)
|||+||||||+|+++|+.|++. |++|+|+||....+. ..++..+.++.+..+ ..+... ... ......
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~------g~~v~vie~~~~~~~-~~~~~~~~~~~~~~l-~~~~~~--~~~---~~~~~~ 67 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADK------GLRVLLLEKKSFPRY-KPCGGALSPRVLEEL-DLPLEL--IVN---LVRGAR 67 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHC------CCeEEEEeccCCCCc-ccccCccCHhHHHHh-cCCchh--hhh---heeeEE
Confidence 6999999999999999999998 999999999987664 456777887776443 111110 000 011112
Q ss_pred EeecCC-cccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCccccc
Q 007716 188 FLTKDR-AFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (592)
Q Consensus 188 ~~~~~~-~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f 266 (592)
+..... .+..+. .....+.++|..+.+.|.+.+++.|++++++++|+++..++++ + .+.+.+
T Consensus 68 ~~~~~~~~~~~~~--~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~-~-~~~~~~------------- 130 (295)
T TIGR02032 68 FFSPNGDSVEIPI--ETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDR-V-VVIVRG------------- 130 (295)
T ss_pred EEcCCCcEEEecc--CCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCE-E-EEEEcC-------------
Confidence 222111 111111 1234677999999999999999999999999999999877643 3 243332
Q ss_pred ccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeeEEEEEeecCCCCCCCcEEEEeccCCCCCCcceEEE
Q 007716 267 QRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGGSFL 346 (592)
Q Consensus 267 ~~g~~i~a~~vI~A~G~~s~vr~~l~~~~~l~~~~~~~~~~~~~g~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~g~~~~ 346 (592)
++.+++||+||+|+|.+|.+++++ ++.. .+...+.++...+..+.....+.....++++...+. +..|+
T Consensus 131 -~~~~~~a~~vv~a~G~~s~~~~~~----~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 199 (295)
T TIGR02032 131 -GEGTVTAKIVIGADGSRSIVAKKL----GLRK----EPRELGVAARAEVEMPDEEVDEDFVEVYIDRGISPG--GYGWV 199 (295)
T ss_pred -ccEEEEeCEEEECCCcchHHHHhc----CCCC----CCcceeeEEEEEEecCCcccCcceEEEEcCCCcCCC--ceEEE
Confidence 136899999999999999888754 5542 234445565555555433333444444444433333 45899
Q ss_pred EEcCCCeEEEEEEecccCCCCCCCcHHHHHHhh-cCccccccccCCceeeecceeeecCCccccCcccCCCEEEEcCCCc
Q 007716 347 YHMNDRQIALGLVVALNYHNPFLNPYEEFQKFK-HHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIGCAAG 425 (592)
Q Consensus 347 ~~~~~~~~~vg~~~~~~~~~~~~~~~~~~~~~~-~~p~i~~~l~~~~~~~~~~~~i~~gg~~~~p~~~~~~v~LiGDAA~ 425 (592)
+|.+++.+.+++...... +..+..+.++.+. .+|. ++..+.++.....++... ..+++..+|++++|||||
T Consensus 200 ~P~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~~~~~~--~~~~~~~~~v~liGDAA~ 271 (295)
T TIGR02032 200 FPKGDGTANVGVGSRSAE--EGEDLKKYLKDFLARRPE----LKDAETVEVIGAPIPIGR--PDDKTVRGNVLLVGDAAG 271 (295)
T ss_pred EeCCCCeEEEeeeeccCC--CCCCHHHHHHHHHHhCcc----cccCcEEeeeceeeccCC--CCCccccCCEEEEecccC
Confidence 999998899988765432 3345566666665 3443 333344443222333322 345778899999999999
Q ss_pred ccCCCCccchHHHHHHHHHHHHHH
Q 007716 426 FLNVPKIKGTHTAMKSGMLAAEAG 449 (592)
Q Consensus 426 ~~~P~~g~G~~~Am~dg~~aA~~l 449 (592)
+++|+.|||+++||+||.+||++|
T Consensus 272 ~~~P~~g~G~~~a~~~a~~aa~~~ 295 (295)
T TIGR02032 272 HVKPLTGEGIYYAMRSGDVAAEVI 295 (295)
T ss_pred CCCCccCCcHHHHHHHHHHHHhhC
Confidence 999999999999999999999875
No 10
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.97 E-value=6.5e-29 Score=264.11 Aligned_cols=335 Identities=20% Similarity=0.194 Sum_probs=204.3
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCC-CCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCc
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA-EVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDK 185 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~-~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~ 185 (592)
.+||+||||||+||++|+.|++. |++|+||||.+ ..-. ...+..+.+.++ +++..+...............
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~------G~~V~l~E~~~~~~~~-~~r~~~l~~~~~-~~L~~lG~~~~i~~~~~~~~~ 73 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARA------GLDVTLLERAPRELLE-RGRGIALSPNAL-RALERLGLWDRLEALGVPPLH 73 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhC------CCcEEEEccCcccccc-CceeeeecHhHH-HHHHHcCChhhhhhccCCcee
Confidence 58999999999999999999999 99999999982 2221 125677788776 444333320000000111111
Q ss_pred EEEee-cC-CcccCC--CCCCCCCcEEEcHHHHHHHHHHHHHHcC-CEEecCceEEEEEEcCCCcEEEEEec-cCcccCC
Q 007716 186 FWFLT-KD-RAFSLP--SPFSNRGNYVISLSQLVRWLGGKAEELG-VEIYPGFAASEILYDADNKVIGIGTN-DMGIAKD 259 (592)
Q Consensus 186 ~~~~~-~~-~~~~~~--~~~~~~~~~~v~~~~l~~~L~~~a~~~G-v~i~~g~~v~~i~~~~~g~v~~V~~~-d~g~~~~ 259 (592)
..... .. ..+.+. ........+++.+..|.+.|.+.+.+.+ |+++++++|+.+..+++ .+. |++. |
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~-~v~-v~l~~d------ 145 (387)
T COG0654 74 VMVVDDGGRRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGD-GVT-VTLSFD------ 145 (387)
T ss_pred eEEEecCCceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCC-ceE-EEEcCC------
Confidence 11111 11 111221 1111344789999999999999999887 99999999999999874 343 6665 4
Q ss_pred CCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccce-eeEEEEEeecCCCCCCCcEEEEeccCCCC
Q 007716 260 GSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYA-LGIKEVWEIDEGKHNPGEILHTLGWPLDQ 338 (592)
Q Consensus 260 G~~~~~f~~g~~i~a~~vI~A~G~~s~vr~~l~~~~~l~~~~~~~~~~~~-~g~~~~~~i~~~~~~~g~~~~~~~~~~~~ 338 (592)
|.+++||+||+|||.+|.+|+.+ +... .....|+ ..+.. .+.......+.....+. +
T Consensus 146 ---------G~~~~a~llVgADG~~S~vR~~~----~~~~---~~~~~y~~~~l~~--~~~~~~~~~~~~~~~~~----~ 203 (387)
T COG0654 146 ---------GETLDADLLVGADGANSAVRRAA----GIAE---FSGRDYGQTALVA--NVEPEEPHEGRAGERFT----H 203 (387)
T ss_pred ---------CcEEecCEEEECCCCchHHHHhc----CCCC---ccCCCCCceEEEE--EeecCCCCCCeEEEEec----C
Confidence 67999999999999999999976 3211 1111122 11111 22222222333332221 1
Q ss_pred CCcceEEEEEcCCCeEEEEEEeccc--CCCCCCCcHHHHHHhhc-CccccccccCCceeeecce-eeecCCccccCcccC
Q 007716 339 KTYGGSFLYHMNDRQIALGLVVALN--YHNPFLNPYEEFQKFKH-HPAIKPLLEGGTVVQYGAR-TLNEGGLQSIPYPVF 414 (592)
Q Consensus 339 ~~~g~~~~~~~~~~~~~vg~~~~~~--~~~~~~~~~~~~~~~~~-~p~i~~~l~~~~~~~~~~~-~i~~gg~~~~p~~~~ 414 (592)
.|..-++|.+++...+.+..... .........+..+.+.. .+.... +. .....+.+ .++.. .....+|..
T Consensus 204 --~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~--~~~~~~~~~~~pl~-~~~a~~~~~ 277 (387)
T COG0654 204 --AGPFALLPLPDNRSSVVWSLPPGPAEDLQGLSDEEFLRELQRRLGERDP-LG--RVTLVSSRSAFPLS-LRVAERYRR 277 (387)
T ss_pred --CCceEEEecCCCceeEEEECChhhHHHHhcCCHHHHHHHHHHhcCcccc-cc--eEEEcccccccccc-chhhhheec
Confidence 13356788875555555554322 11111222222121111 111111 11 11111111 11111 112346777
Q ss_pred CCEEEEcCCCcccCCCCccchHHHHHHHHHHHHHHhhhccC---CchHHHHHHHHHHhHHHHHHHHHHcchhhhh
Q 007716 415 PGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE---DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (592)
Q Consensus 415 ~~v~LiGDAA~~~~P~~g~G~~~Am~dg~~aA~~l~~~~~~---~~~l~~Y~~~~~~~~~~~~l~~~r~~~~~~~ 486 (592)
+|++|+|||||.++|+.|||+|+||+|+..||++|.++... ...|+.|+++++.. +.+.+..++.+...|.
T Consensus 278 ~Rv~LiGDAAH~~~P~~gQG~nlgl~Da~~La~~L~~~~~~~~~~~~L~~Y~~~R~~~-~~~~~~~s~~~~~~~~ 351 (387)
T COG0654 278 GRVVLIGDAAHAMHPLAGQGANLALEDAAALAEALAAAPRPGADAAALAAYEARRRPR-AEAIQKLSRALGRLFS 351 (387)
T ss_pred CcEEEEeeccccCCCccccchhhhhhhHHHHHHHHHHHhhcCccHHHHHHHHHhhhhH-HHHHHHHHHHHhhhhc
Confidence 99999999999999999999999999999999999998763 47899999999876 8888888887666664
No 11
>PRK07045 putative monooxygenase; Reviewed
Probab=99.97 E-value=1.3e-28 Score=262.30 Aligned_cols=341 Identities=16% Similarity=0.157 Sum_probs=201.6
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeee-ccCC
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVP-VSSD 184 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~-~~~~ 184 (592)
..+||+||||||+||++|+.|++. |++|+|+||.+..... ..+..+.+.++. ++..+.......... ...+
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~------G~~v~v~E~~~~~~~~-~~~~~l~~~~~~-~L~~lGl~~~~~~~~~~~~~ 75 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGAR------GHSVTVVERAARNRAQ-NGADLLKPSGIG-VVRAMGLLDDVFAAGGLRRD 75 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhc------CCcEEEEeCCCcccCC-CcccccCccHHH-HHHHcCCHHHHHhccccccc
Confidence 458999999999999999999999 9999999999865321 123346666553 222221110000000 0011
Q ss_pred cEEEeecCCc-ccCCCCC-CCCC-cEEEcHHHHHHHHHHHHHH-cCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCC
Q 007716 185 KFWFLTKDRA-FSLPSPF-SNRG-NYVISLSQLVRWLGGKAEE-LGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDG 260 (592)
Q Consensus 185 ~~~~~~~~~~-~~~~~~~-~~~~-~~~v~~~~l~~~L~~~a~~-~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G 260 (592)
.+.+...+.. ..++... ...+ ...++|..|.+.|.+.+.+ .|++++++++++++..++++.++.|++.+
T Consensus 76 ~~~~~~~g~~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~------- 148 (388)
T PRK07045 76 AMRLYHDKELIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSD------- 148 (388)
T ss_pred ceEEecCCcEEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCC-------
Confidence 1222111111 1111111 1112 2457899999999999865 57999999999999988777666677654
Q ss_pred CcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeeEEEEEeecCCCCCCCcEEEEeccCCCCCC
Q 007716 261 SKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKT 340 (592)
Q Consensus 261 ~~~~~f~~g~~i~a~~vI~A~G~~s~vr~~l~~~~~l~~~~~~~~~~~~~g~~~~~~i~~~~~~~g~~~~~~~~~~~~~~ 340 (592)
|.++++|+||+|||.+|.+|+++. ++........+....+.. ...... +.....+++ ..
T Consensus 149 --------g~~~~~~~vIgADG~~S~vR~~~~---~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~---~~-- 207 (388)
T PRK07045 149 --------GERVAPTVLVGADGARSMIRDDVL---RMPAERVPYATPMAFGTI---ALTDSV--RECNRLYVD---SN-- 207 (388)
T ss_pred --------CCEEECCEEEECCCCChHHHHHhh---CCCcccCCCCcceeEEEE---eccCCc--cccceEEEc---CC--
Confidence 578999999999999999999762 333100111122222221 122111 111111121 11
Q ss_pred cceEEEEEcCCCeEEEEEEecccCCCCCCC--cHHHH-HHhhc--CccccccccCCc-eeeecceeeecCCccccCcccC
Q 007716 341 YGGSFLYHMNDRQIALGLVVALNYHNPFLN--PYEEF-QKFKH--HPAIKPLLEGGT-VVQYGARTLNEGGLQSIPYPVF 414 (592)
Q Consensus 341 ~g~~~~~~~~~~~~~vg~~~~~~~~~~~~~--~~~~~-~~~~~--~p~i~~~l~~~~-~~~~~~~~i~~gg~~~~p~~~~ 414 (592)
.|..|+||..++...+.+....+....... ..+.+ +.+.. .+.+.+.++... ...+. ..+.. ...+++|+.
T Consensus 208 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~ 284 (388)
T PRK07045 208 QGLAYFYPIGDQATRLVVSFPADEMQGYLADTTRTKLLARLNEFVGDESADAMAAIGAGTAFP--LIPLG-RMNLDRYHK 284 (388)
T ss_pred CceEEEEEcCCCcEEEEEEeccccchhccCCCCHHHHHHHHhhhcCccchHHHhccCcccccc--eeecC-ccccccccC
Confidence 133678898877777766554322111111 11121 22221 122222221111 01111 11111 124568889
Q ss_pred CCEEEEcCCCcccCCCCccchHHHHHHHHHHHHHHhhhccC----CchHHHHHHHHHHhHHHHHHHHHHcchhhhh
Q 007716 415 PGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE----DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (592)
Q Consensus 415 ~~v~LiGDAA~~~~P~~g~G~~~Am~dg~~aA~~l~~~~~~----~~~l~~Y~~~~~~~~~~~~l~~~r~~~~~~~ 486 (592)
+|++|||||||.++|+.|||+|+||+||..||++|...+.. ..+|+.|++.|+.. ....+..++.+...++
T Consensus 285 grv~LiGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~~~L~~Ye~~R~~~-~~~~~~~~~~~~~~~~ 359 (388)
T PRK07045 285 RNVVLLGDAAHSIHPITGQGMNLAIEDAGELGACLDLHLSGQIALADALERFERIRRPV-NEAVISYGHALATTYH 359 (388)
T ss_pred CCEEEEEccccccCCCccccHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhhhH-HHHHHhhhHHHhhhcc
Confidence 99999999999999999999999999999999999876543 36899999999865 6666777776666664
No 12
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.97 E-value=5.8e-30 Score=268.18 Aligned_cols=332 Identities=20% Similarity=0.245 Sum_probs=185.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhh------hcCCCee--
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWK------QEEAPIR-- 178 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~------~~~~~~~-- 178 (592)
++||+||||||+||++|+.|++. |++|+||||.+..... ..|..+.+.++ +++..+. ....+..
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~------G~~v~i~E~~~~~~~~-~~~~~l~~~~~-~~l~~lgl~~~~~~~~~~~~~~ 72 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARA------GIDVTIIERRPDPRPK-GRGIGLSPNSL-RILQRLGLLDEILARGSPHEVM 72 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHT------TCEEEEEESSSSCCCS-SSSEEEEHHHH-HHHHHTTEHHHHHHHSEEECEE
T ss_pred CceEEEECCCHHHHHHHHHHHhc------ccccccchhccccccc-ccccccccccc-cccccccchhhhhhhcccccce
Confidence 48999999999999999999999 9999999998875432 25666777776 3333322 1111100
Q ss_pred -eecc----CCcEEEeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEecc
Q 007716 179 -VPVS----SDKFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTND 253 (592)
Q Consensus 179 -~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d 253 (592)
.... ....+.........+.........+.+.|..|.++|.+.+++.|++|+++++++++..++++ +. +.+.+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~-~~-~~~~~ 150 (356)
T PF01494_consen 73 RIFFYDGISDSRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDDG-VT-VVVRD 150 (356)
T ss_dssp EEEEEEETTTSEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETTE-EE-EEEEE
T ss_pred eeEeecccCCccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeecccccccccc-cc-ccccc
Confidence 0000 00011111111111111122234577899999999999999999999999999999988754 32 22222
Q ss_pred CcccCCCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeeEEE-EEeecCCCCCCCcEEEEe
Q 007716 254 MGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKE-VWEIDEGKHNPGEILHTL 332 (592)
Q Consensus 254 ~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~vr~~l~~~~~l~~~~~~~~~~~~~g~~~-~~~i~~~~~~~g~~~~~~ 332 (592)
..+|+ ..+++||+||+|||.+|.+|+++ +... ......+..+... ...........+ ..++
T Consensus 151 ---~~~g~-------~~~i~adlvVgADG~~S~vR~~l----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 212 (356)
T PF01494_consen 151 ---GEDGE-------EETIEADLVVGADGAHSKVRKQL----GIDR--PGPDTVYRWGWFGIVFDSDLSDPWED--HCFI 212 (356)
T ss_dssp ---TCTCE-------EEEEEESEEEE-SGTT-HHHHHT----TGGE--EEEEEEEEEEEEEEEEECHSHTTTSC--EEEE
T ss_pred ---ccCCc-------eeEEEEeeeecccCcccchhhhc----cccc--cCcccccccccccccccccccccccc--cccc
Confidence 12333 25899999999999999999976 3331 0011111112211 111111111222 1111
Q ss_pred ccCCCCCCcceEEEEEcCC-CeEEEEEEecccCCCCCCCc----HHHHHHhhcCccccccccCCceeeecceeeecCCcc
Q 007716 333 GWPLDQKTYGGSFLYHMND-RQIALGLVVALNYHNPFLNP----YEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQ 407 (592)
Q Consensus 333 ~~~~~~~~~g~~~~~~~~~-~~~~vg~~~~~~~~~~~~~~----~~~~~~~~~~p~i~~~l~~~~~~~~~~~~i~~gg~~ 407 (592)
..+ ..++.+++|..+ +...+.+....+........ .+.++.+.. .+............ ..++.. ..
T Consensus 213 ~~~----~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~-~~ 283 (356)
T PF01494_consen 213 YSP----PSGGFAIIPLENGDRSRFVWFLPFDESKEERPEEFSPEELFANLPE--IFGPDLLETEIDEI--SAWPIP-QR 283 (356)
T ss_dssp EEE----TTEEEEEEEETTTTEEEEEEEEETTTTTCCSTHCHHHHHHHHHHHH--HHHTCHHHHEEEEE--EEEEEE-EE
T ss_pred ccc----cccceeEeeccCCccceEEEeeeccccccccccccccccccccccc--cccccccccccccc--cccccc-cc
Confidence 111 123347888876 44433333333322111111 111112211 11110000111111 111111 12
Q ss_pred ccCcccCCCEEEEcCCCcccCCCCccchHHHHHHHHHHHHHHhhhccC---CchHHHHHHHHHHhHHHHHHH
Q 007716 408 SIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE---DSNMEIYWDTLQKSWVWQELQ 476 (592)
Q Consensus 408 ~~p~~~~~~v~LiGDAA~~~~P~~g~G~~~Am~dg~~aA~~l~~~~~~---~~~l~~Y~~~~~~~~~~~~l~ 476 (592)
..++|..+|++|||||||.|+|+.|||+|+||+||..||+.|...... ...|+.|++.|+.+ ..+.++
T Consensus 284 ~~~~~~~grv~LiGDAAh~~~P~~GqG~n~Ai~da~~La~~L~~~~~g~~~~~~l~~Y~~~r~~~-~~~~~~ 354 (356)
T PF01494_consen 284 VADRWVKGRVLLIGDAAHAMDPFSGQGINMAIEDAAALAELLAAALKGEASEEALKAYEQERRPR-ARKAVQ 354 (356)
T ss_dssp EESSSEETTEEE-GGGTEEE-CCTSHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHH-HHHHHH
T ss_pred cccccccceeEEeccceeeecccccCCCCcccccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH-HHHHHh
Confidence 345788899999999999999999999999999999999999988753 35799999999875 444443
No 13
>PRK08013 oxidoreductase; Provisional
Probab=99.97 E-value=1e-28 Score=263.86 Aligned_cols=336 Identities=15% Similarity=0.121 Sum_probs=196.1
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCc-----ccccCccChHHHHHhhHhhhhcCCCeee-e
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAH-----IISGNVFEPRALNELLPQWKQEEAPIRV-P 180 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~-----~~~g~~i~~~~l~~ll~~~~~~~~~~~~-~ 180 (592)
++||+||||||+|+++|+.|++. |++|+||||.+.+... ...+..+.+.++ +++..+...+..... .
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~------G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~-~~L~~lGl~~~~~~~~~ 75 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGS------GLRVAVLEQRVPEPLAADAPPALRVSAINAASE-KLLTRLGVWQDILARRA 75 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhC------CCEEEEEeCCCCcccccCCCCCceeeecchhHH-HHHHHcCCchhhhhhcC
Confidence 58999999999999999999999 9999999998764321 122334566655 444443321111100 0
Q ss_pred ccCCcEEEeecC--CcccCCCCC--CCCCcEEEcHHHHHHHHHHHHHHc-CCEEecCceEEEEEEcCCCcEEEEEeccCc
Q 007716 181 VSSDKFWFLTKD--RAFSLPSPF--SNRGNYVISLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMG 255 (592)
Q Consensus 181 ~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~v~~~~l~~~L~~~a~~~-Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g 255 (592)
...+.+.+.+.. ..+.+.... .....|++.|..|.+.|.+.+.+. ||+++++++|++++.++++ + .|++.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~-v-~v~~~~-- 151 (400)
T PRK08013 76 SCYHGMEVWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENE-A-FLTLKD-- 151 (400)
T ss_pred ccccEEEEEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe-E-EEEEcC--
Confidence 111222222221 111111110 111257899999999999999886 7999999999999887654 3 355544
Q ss_pred ccCCCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeeEEEEEeecCCCCCCCcEEEEeccC
Q 007716 256 IAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWP 335 (592)
Q Consensus 256 ~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~vr~~l~~~~~l~~~~~~~~~~~~~g~~~~~~i~~~~~~~g~~~~~~~~~ 335 (592)
|.+++||+||+|||.+|.+|+++ +++. ........ .+.. .++......+.....+
T Consensus 152 -------------g~~i~a~lvVgADG~~S~vR~~~----~~~~-~~~~~~~~--~~~~--~v~~~~~~~~~~~~~~--- 206 (400)
T PRK08013 152 -------------GSMLTARLVVGADGANSWLRNKA----DIPL-TFWDYQHH--ALVA--TIRTEEPHDAVARQVF--- 206 (400)
T ss_pred -------------CCEEEeeEEEEeCCCCcHHHHHc----CCCc-cccccCcE--EEEE--EEeccCCCCCEEEEEE---
Confidence 57899999999999999999976 5542 11111111 1111 2222222222222222
Q ss_pred CCCCCcceEEEEEcCCCe-EEEEEEecccCCC-CCCCcHHHHHH-hhcCccccccccCCceeeecceeeecCCccccCcc
Q 007716 336 LDQKTYGGSFLYHMNDRQ-IALGLVVALNYHN-PFLNPYEEFQK-FKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYP 412 (592)
Q Consensus 336 ~~~~~~g~~~~~~~~~~~-~~vg~~~~~~~~~-~~~~~~~~~~~-~~~~p~i~~~l~~~~~~~~~~~~i~~gg~~~~p~~ 412 (592)
... |..+++|..++. ..+.+....+... ......+.|.. +.. .+...+...+.... ....+... ...++|
T Consensus 207 ~~~---g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~l~~~~~~~~-~~~~~l~~-~~~~~~ 279 (400)
T PRK08013 207 HGD---GILAFLPLSDPHLCSIVWSLSPEEAQRMQQAPEEEFNRALAI--AFDNRLGLCELESE-RQVFPLTG-RYARQF 279 (400)
T ss_pred cCC---CCEEEEECCCCCeEEEEEEcCHHHHHHHHcCCHHHHHHHHHH--HHhHhhCceEecCC-ccEEecce-eecccc
Confidence 111 335677876543 4555444322100 00011112211 111 00011111111110 00111111 135789
Q ss_pred cCCCEEEEcCCCcccCCCCccchHHHHHHHHHHHHHHhhhccC----C--chHHHHHHHHHHhHHHHHHHHHHcchhhhh
Q 007716 413 VFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE----D--SNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (592)
Q Consensus 413 ~~~~v~LiGDAA~~~~P~~g~G~~~Am~dg~~aA~~l~~~~~~----~--~~l~~Y~~~~~~~~~~~~l~~~r~~~~~~~ 486 (592)
..+|++|+|||||.++|+.|||+|+||+||..||+.|...+.. . ..|++|++.|+.. ....+...+.+..+|.
T Consensus 280 ~~grv~LiGDAAH~~~P~~GQG~n~gi~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~-~~~~~~~~~~~~~l~~ 358 (400)
T PRK08013 280 AAHRLALVGDAAHTIHPLAGQGVNLGFMDAAELIAELRRLHRQGKDIGQHLYLRRYERSRKHS-AALMLAGMQGFRDLFA 358 (400)
T ss_pred cCCcEEEEechhhcCCccccCchhhhHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999865422 1 2599999988764 6666666677777664
No 14
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.97 E-value=1.6e-28 Score=260.14 Aligned_cols=327 Identities=13% Similarity=0.170 Sum_probs=197.0
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCc---ccccCccChHHHHHhhHh---hhhcCCCeeeec
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAH---IISGNVFEPRALNELLPQ---WKQEEAPIRVPV 181 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~---~~~g~~i~~~~l~~ll~~---~~~~~~~~~~~~ 181 (592)
+||+||||||+|+++|+.|++. |++|+|+|+.+..... ...+..+.+.++ +++.. |..... . ..
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~------G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~-~~L~~lGl~~~l~~-~--~~ 71 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQK------GIKTTIFESKSVKSPEFFKDIRTTALTPHSK-NFLFSIDIWEELEK-F--VA 71 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcC------CCeEEEecCCCCCCCccCcCceEEEeCHHHH-HHHHHCCcHHHHHh-h--cC
Confidence 7899999999999999999999 9999999987432111 124556777765 22322 322110 0 01
Q ss_pred cCCcEEEeecCC--cccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcC-CEEecCceEEEEEEcCCCcEEEEEeccCcccC
Q 007716 182 SSDKFWFLTKDR--AFSLPSPFSNRGNYVISLSQLVRWLGGKAEELG-VEIYPGFAASEILYDADNKVIGIGTNDMGIAK 258 (592)
Q Consensus 182 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G-v~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~ 258 (592)
....+.+.+... .+.++.......+|++.|..|.+.|.+++++.+ ++++++++++++..++++ + .|.+.+
T Consensus 72 ~~~~~~~~~~~g~~~~~~~~~~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~-v-~v~~~~----- 144 (374)
T PRK06617 72 EMQDIYVVDNKASEILDLRNDADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDY-S-IIKFDD----- 144 (374)
T ss_pred CCcEEEEEECCCceEEEecCCCCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCe-E-EEEEcC-----
Confidence 112222222211 122222111123689999999999999998876 999999999999887644 3 466543
Q ss_pred CCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeeEEEEEeecCCCCCCCcEEEEeccCCCC
Q 007716 259 DGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQ 338 (592)
Q Consensus 259 ~G~~~~~f~~g~~i~a~~vI~A~G~~s~vr~~l~~~~~l~~~~~~~~~~~~~g~~~~~~i~~~~~~~g~~~~~~~~~~~~ 338 (592)
+ +++||+||+|||.+|.+|+.+ +... .. ..|-.++ .+.++......+.....+ .+
T Consensus 145 ----------~-~~~adlvIgADG~~S~vR~~l----~~~~-~~---~~y~~~~--~~~v~~~~~~~~~~~~~~-~~--- 199 (374)
T PRK06617 145 ----------K-QIKCNLLIICDGANSKVRSHY----FANE-IE---KPYQTAL--TFNIKHEKPHENCAMEHF-LP--- 199 (374)
T ss_pred ----------C-EEeeCEEEEeCCCCchhHHhc----CCCc-cc---ccCCeEE--EEEEeccCCCCCEEEEEe-cC---
Confidence 4 899999999999999999876 3331 01 1111222 233332222222212111 11
Q ss_pred CCcceEEEEEcCCCe-EEEEEEecccCCCC-CCCcHHHHHHhhcCccccccccCCceeeecceeeecCCccccCcccCCC
Q 007716 339 KTYGGSFLYHMNDRQ-IALGLVVALNYHNP-FLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPG 416 (592)
Q Consensus 339 ~~~g~~~~~~~~~~~-~~vg~~~~~~~~~~-~~~~~~~~~~~~~~p~i~~~l~~~~~~~~~~~~i~~gg~~~~p~~~~~~ 416 (592)
.|..+++|..++. ..+.+....+.... ...+.+++..... +.+...+..-. .......++... ...++|..+|
T Consensus 200 --~g~~~~lPl~~~~~~~~vw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~-~~~~~~~~~l~~-~~~~~~~~gr 274 (374)
T PRK06617 200 --LGPFALLPLKDQYASSVIWSTSSDQAALIVNLPVEEVRFLTQ-RNAGNSLGKIT-IDSEISSFPLKA-RIANRYFHNR 274 (374)
T ss_pred --CCCEEEeECCCCCeEEEEEeCCHHHHHHHHcCCHHHHHHHHH-HhhchhcCcee-eccceeEEEeee-eeccceecCC
Confidence 1346788988765 33333332110000 0111223222211 11111111100 000011112111 1456899999
Q ss_pred EEEEcCCCcccCCCCccchHHHHHHHHHHHHHHhhhccCCchHHHHHHHHHHhHHHHHHHHHHcchhhhh
Q 007716 417 GAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHEDSNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (592)
Q Consensus 417 v~LiGDAA~~~~P~~g~G~~~Am~dg~~aA~~l~~~~~~~~~l~~Y~~~~~~~~~~~~l~~~r~~~~~~~ 486 (592)
++|+|||||.++|..|||+|+||+|+..|+++|.. ...|+.|++.|+.. ....+..++.+..+|.
T Consensus 275 v~LiGDAAH~~~P~~GQG~n~gl~Da~~La~~L~~----~~~L~~Ye~~R~~~-~~~~~~~t~~l~~~f~ 339 (374)
T PRK06617 275 IVLIADTAHTVHPLAGQGLNQGIKDIEILSMIVSN----NGTLQEYQKLRQED-NFIMYKLTDELNNIFS 339 (374)
T ss_pred EEEEEcccccCCCCccccHHHHHHHHHHHHHHHcC----cchHHHHHHHHhHH-HHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999842 36899999999876 8888888888887775
No 15
>PRK06753 hypothetical protein; Provisional
Probab=99.97 E-value=1.6e-28 Score=260.16 Aligned_cols=331 Identities=17% Similarity=0.159 Sum_probs=202.9
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcEE
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~~ 187 (592)
.||+||||||+||++|+.|++. |++|+|+||.+.+.. ...|..+.+.++..| ..+...............+.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~------g~~v~v~E~~~~~~~-~g~gi~l~~~~~~~L-~~~gl~~~~~~~~~~~~~~~ 72 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQ------GHEVKVFEKNESVKE-VGAGIGIGDNVIKKL-GNHDLAKGIKNAGQILSTMN 72 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCcEEEEecCCcccc-cccceeeChHHHHHH-HhcChHHHHHhcCCccccee
Confidence 3799999999999999999999 999999999987643 234556777766333 22221100000011112222
Q ss_pred EeecCCcc--cCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccc
Q 007716 188 FLTKDRAF--SLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKEN 265 (592)
Q Consensus 188 ~~~~~~~~--~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~ 265 (592)
+.+..... .++. ......+.++|..|.+.|.+.++ +++|+++++|+++..++ +.+ .|++.+
T Consensus 73 ~~~~~g~~~~~~~~-~~~~~~~~i~R~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~-~~v-~v~~~~------------ 135 (373)
T PRK06753 73 LLDDKGTLLNKVKL-KSNTLNVTLHRQTLIDIIKSYVK--EDAIFTGKEVTKIENET-DKV-TIHFAD------------ 135 (373)
T ss_pred EEcCCCCEEeeccc-ccCCccccccHHHHHHHHHHhCC--CceEEECCEEEEEEecC-CcE-EEEECC------------
Confidence 33221111 1111 11223578999999999998875 36899999999998765 333 466654
Q ss_pred cccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCccccee-eEEEEEeecCCC-CCCCcEEEEeccCCCCCCcce
Q 007716 266 FQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYAL-GIKEVWEIDEGK-HNPGEILHTLGWPLDQKTYGG 343 (592)
Q Consensus 266 f~~g~~i~a~~vI~A~G~~s~vr~~l~~~~~l~~~~~~~~~~~~~-g~~~~~~i~~~~-~~~g~~~~~~~~~~~~~~~g~ 343 (592)
|.++++|+||+|||.+|.+|+++. ... .....+. .+.. .++... .......++++ . -|.
T Consensus 136 ---g~~~~~~~vigadG~~S~vR~~~~----~~~----~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~----~--~g~ 196 (373)
T PRK06753 136 ---GESEAFDLCIGADGIHSKVRQSVN----ADS----KVRYQGYTCFRG--LIDDIDLKLPDCAKEYWG----T--KGR 196 (373)
T ss_pred ---CCEEecCEEEECCCcchHHHHHhC----CCC----CceEcceEEEEE--EeccccccCccceEEEEc----C--CCE
Confidence 578899999999999999999872 221 1111111 1111 112111 11122222221 1 144
Q ss_pred EEEEEcCCCeEEEEEEecccCCCCCCC--cHHHHH-Hhhc-CccccccccCCceeeecceeeecCCccccCcccCCCEEE
Q 007716 344 SFLYHMNDRQIALGLVVALNYHNPFLN--PYEEFQ-KFKH-HPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAI 419 (592)
Q Consensus 344 ~~~~~~~~~~~~vg~~~~~~~~~~~~~--~~~~~~-~~~~-~p~i~~~l~~~~~~~~~~~~i~~gg~~~~p~~~~~~v~L 419 (592)
.+++|..++.+.+.+....+...+... ..++++ .++. .+.++++++....... ...+.....++++|..+|++|
T Consensus 197 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~rv~L 274 (373)
T PRK06753 197 FGIVPLLNNQAYWFITINAKERDPKYSSFGKPHLQAYFNHYPNEVREILDKQSETGI--LHHDIYDLKPLKSFVYGRIVL 274 (373)
T ss_pred EEEEEcCCCeEEEEEEeccccCCcccccccHHHHHHHHhcCChHHHHHHHhCCcccc--eeeccccccccccccCCCEEE
Confidence 678898887776665543221111111 112222 2332 2444444432211110 001111223457888999999
Q ss_pred EcCCCcccCCCCccchHHHHHHHHHHHHHHhhhccCCchHHHHHHHHHHhHHHHHHHHHHcchhhhh
Q 007716 420 IGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHEDSNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (592)
Q Consensus 420 iGDAA~~~~P~~g~G~~~Am~dg~~aA~~l~~~~~~~~~l~~Y~~~~~~~~~~~~l~~~r~~~~~~~ 486 (592)
||||||.|+|+.|||+|+||+||..|+++|... ....+|+.|++.|+.+ +.+.++.++.+..+++
T Consensus 275 iGDAAh~~~P~~GqG~n~ai~Da~~L~~~L~~~-~~~~al~~Y~~~r~~~-~~~~~~~s~~~~~~~~ 339 (373)
T PRK06753 275 LGDAAHATTPNMGQGAGQAMEDAIVLANCLNAY-DFEKALQRYDKIRVKH-TAKVIKRSRKIGKIAQ 339 (373)
T ss_pred EecccccCCCCcCccHHHHHHHHHHHHHHhhhc-cHHHHHHHHHHHhhHH-HHHHHHHHHHHhHHHh
Confidence 999999999999999999999999999999542 2246899999999976 8899999998888775
No 16
>PRK07538 hypothetical protein; Provisional
Probab=99.97 E-value=2.5e-28 Score=262.13 Aligned_cols=334 Identities=19% Similarity=0.207 Sum_probs=192.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcEE
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~~ 187 (592)
.||+||||||+||++|+.|++. |++|+|+||.+.+.. ...|..+.+.++..| ..+..........+....+.
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~------G~~v~v~E~~~~~~~-~g~gi~l~p~~~~~L-~~lgl~~~l~~~~~~~~~~~ 72 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQR------GIEVVVFEAAPELRP-LGVGINLLPHAVREL-AELGLLDALDAIGIRTRELA 72 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhC------CCcEEEEEcCCcccc-cCcceeeCchHHHHH-HHCCCHHHHHhhCCCCcceE
Confidence 4799999999999999999999 999999999886542 234555667665322 22211100000011112222
Q ss_pred EeecCCcc--cCCCC---CCCCCcEEEcHHHHHHHHHHHHHH-cC-CEEecCceEEEEEEcCCCcEEEEEeccCcccCCC
Q 007716 188 FLTKDRAF--SLPSP---FSNRGNYVISLSQLVRWLGGKAEE-LG-VEIYPGFAASEILYDADNKVIGIGTNDMGIAKDG 260 (592)
Q Consensus 188 ~~~~~~~~--~~~~~---~~~~~~~~v~~~~l~~~L~~~a~~-~G-v~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G 260 (592)
+.+..... ..+.. ......+.++|..|.+.|.+.+.+ .| ++|+++++|+++..++++.+ +.+.+ ..+|
T Consensus 73 ~~~~~g~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~--~~~~~---~~~g 147 (413)
T PRK07538 73 YFNRHGQRIWSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTV--VFLGD---RAGG 147 (413)
T ss_pred EEcCCCCEEeeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceE--EEEec---cCCC
Confidence 22211111 11100 011224679999999999999866 47 57999999999988776633 33332 1122
Q ss_pred CcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeeEEEEEe-ecCCCCCCCcEEEEeccCCCCC
Q 007716 261 SKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWE-IDEGKHNPGEILHTLGWPLDQK 339 (592)
Q Consensus 261 ~~~~~f~~g~~i~a~~vI~A~G~~s~vr~~l~~~~~l~~~~~~~~~~~~~g~~~~~~-i~~~~~~~g~~~~~~~~~~~~~ 339 (592)
+ +.+++||+||+|||.+|.+|+++. ... ..+... |+..... ++......+......+.+ +
T Consensus 148 ~-------~~~~~adlvIgADG~~S~vR~~l~----~~~---~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~g~~---~ 208 (413)
T PRK07538 148 D-------LVSVRGDVLIGADGIHSAVRAQLY----PDE---GPPRWN--GVMMWRGVTEAPPFLTGRSMVMAGHL---D 208 (413)
T ss_pred c-------cceEEeeEEEECCCCCHHHhhhhc----CCC---CCCccc--ceEEEEEeecCccccCCCcEEEEcCC---C
Confidence 2 368999999999999999999872 221 112222 2211111 111112222222222221 1
Q ss_pred CcceEEEEEcCCC-----eEEEEEEecc--c---CCC--CC---CCcHHHHHHhhcC-c---cccccccCC-ceeeecce
Q 007716 340 TYGGSFLYHMNDR-----QIALGLVVAL--N---YHN--PF---LNPYEEFQKFKHH-P---AIKPLLEGG-TVVQYGAR 399 (592)
Q Consensus 340 ~~g~~~~~~~~~~-----~~~vg~~~~~--~---~~~--~~---~~~~~~~~~~~~~-p---~i~~~l~~~-~~~~~~~~ 399 (592)
+..++||..++ ...+.+++.. + ... .+ ....+.++.|... + .+.++++.. ....+
T Consensus 209 --~~~~~~p~~~~~~~~g~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--- 283 (413)
T PRK07538 209 --GKLVVYPISEPVDADGRQLINWVAEVRVDDAGAPRREDWNRPGDLEDFLPHFADWRFDWLDVPALIRAAEAIYEY--- 283 (413)
T ss_pred --CEEEEEECCCCcccCCceEEEEEEEEcCCccCCCcccccCCccCHHHHHHHhcCCCCCcccHHHHHhcCcceeec---
Confidence 22456665432 1222232221 1 000 01 1111222222211 1 133334322 22222
Q ss_pred eeecCCccccCcccCCCEEEEcCCCcccCCCCccchHHHHHHHHHHHHHHhhhccCCchHHHHHHHHHHhHHHHHHHHHH
Q 007716 400 TLNEGGLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHEDSNMEIYWDTLQKSWVWQELQRAR 479 (592)
Q Consensus 400 ~i~~gg~~~~p~~~~~~v~LiGDAA~~~~P~~g~G~~~Am~dg~~aA~~l~~~~~~~~~l~~Y~~~~~~~~~~~~l~~~r 479 (592)
+.....++++|..+|++|||||||.|+|+.|||+++||+||..||++|.+.-....+|+.|++.|+.+ +.+.+..++
T Consensus 284 --p~~~~~~~~~w~~grv~LvGDAAH~~~P~~GqG~~~Ai~Da~~La~~L~~~~~~~~aL~~Ye~~R~~~-~~~~~~~s~ 360 (413)
T PRK07538 284 --PMVDRDPLPRWTRGRVTLLGDAAHPMYPVGSNGASQAILDARALADALAAHGDPEAALAAYEAERRPA-TAQIVLANR 360 (413)
T ss_pred --cccccCCCCcccCCcEEEEeeccCcCCCCCcccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhHH-HHHHHHHhh
Confidence 22223456889999999999999999999999999999999999999987432346899999999976 777777777
Q ss_pred cc
Q 007716 480 NY 481 (592)
Q Consensus 480 ~~ 481 (592)
..
T Consensus 361 ~~ 362 (413)
T PRK07538 361 LN 362 (413)
T ss_pred hc
Confidence 63
No 17
>PRK08244 hypothetical protein; Provisional
Probab=99.97 E-value=3.4e-28 Score=266.83 Aligned_cols=337 Identities=16% Similarity=0.146 Sum_probs=197.1
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCc
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDK 185 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~ 185 (592)
|++||+||||||+||++|+.|++. |++|+||||.+.... ...+..+.++++ +++..+...+...........
T Consensus 1 ~~~dVlIVGaGpaGl~lA~~L~~~------G~~v~viEr~~~~~~-~~ra~~l~~~~~-e~l~~lGl~~~l~~~~~~~~~ 72 (493)
T PRK08244 1 MKYEVIIIGGGPVGLMLASELALA------GVKTCVIERLKETVP-YSKALTLHPRTL-EILDMRGLLERFLEKGRKLPS 72 (493)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHC------CCcEEEEecCCCCCC-CcceeEecHHHH-HHHHhcCcHHHHHhhcccccc
Confidence 468999999999999999999999 999999999876432 234566777776 444433221100000000011
Q ss_pred EEEeecCCcccCCCC-CCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCccc
Q 007716 186 FWFLTKDRAFSLPSP-FSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKE 264 (592)
Q Consensus 186 ~~~~~~~~~~~~~~~-~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~ 264 (592)
..+......+++... ......+.+++..+.+.|.+.+++.|++|+++++++++..++++ + .|++.+ .+|.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-v-~v~~~~----~~g~--- 143 (493)
T PRK08244 73 GHFAGLDTRLDFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDG-V-EVVVRG----PDGL--- 143 (493)
T ss_pred eEEecccccCCcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCe-E-EEEEEe----CCcc---
Confidence 111111111222110 11122467899999999999999999999999999999887754 3 344432 1121
Q ss_pred ccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeeEEEEEeecCCCCCCCcEEEEeccCCCCCCcceE
Q 007716 265 NFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGGS 344 (592)
Q Consensus 265 ~f~~g~~i~a~~vI~A~G~~s~vr~~l~~~~~l~~~~~~~~~~~~~g~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~g~~ 344 (592)
.+++||+||+|||.+|.+|+++ ++.. ....... .++.....+. ....+.....++ +. |..
T Consensus 144 -----~~i~a~~vVgADG~~S~vR~~l----gi~~-~g~~~~~--~~~~~~~~~~--~~~~~~~~~~~~----~~--g~~ 203 (493)
T PRK08244 144 -----RTLTSSYVVGADGAGSIVRKQA----GIAF-PGTDATF--TAMLGDVVLK--DPPPSSVLSLCT----RE--GGV 203 (493)
T ss_pred -----EEEEeCEEEECCCCChHHHHhc----CCCc-cCCCcce--EEEEEEEEec--CCCCcceeEEEe----CC--ceE
Confidence 5799999999999999999865 5543 1111111 1221111221 111222222221 22 457
Q ss_pred EEEEcCCCeEEEEEEecccCCC---CCCCcHHHHHHhhcCccccccccCCceeeecceeeecCCccccCcccCCCEEEEc
Q 007716 345 FLYHMNDRQIALGLVVALNYHN---PFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIG 421 (592)
Q Consensus 345 ~~~~~~~~~~~vg~~~~~~~~~---~~~~~~~~~~~~~~~p~i~~~l~~~~~~~~~~~~i~~gg~~~~p~~~~~~v~LiG 421 (592)
+++|.+++...+.+........ ...+..+..+.+... +...+...... +.. ..+ ......++|..+|++|+|
T Consensus 204 ~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~-~~~-~~~-~~~~~a~~~~~gRv~L~G 278 (493)
T PRK08244 204 MIVPLSGGIYRVLIIDPERPQVPKDEPVTLEELKTSLIRI--CGTDFGLNDPV-WMS-RFG-NATRQAERYRSGRIFLAG 278 (493)
T ss_pred EEEECCCCeEEEEEEcCCcccccCCCCCCHHHHHHHHHHh--hCCCCCcCCee-EEE-ecc-cceeeHhhhccCcEEEee
Confidence 8899988877765443221111 111222222222211 00011100111 100 000 011234578889999999
Q ss_pred CCCcccCCCCccchHHHHHHHHHHHHHHhhhccC---CchHHHHHHHHHHhHHHHHHHHHHcchhhh
Q 007716 422 CAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE---DSNMEIYWDTLQKSWVWQELQRARNYRPAF 485 (592)
Q Consensus 422 DAA~~~~P~~g~G~~~Am~dg~~aA~~l~~~~~~---~~~l~~Y~~~~~~~~~~~~l~~~r~~~~~~ 485 (592)
||||.++|+.|||+|+||+||..||+.|...++. ...|+.|+++|+.. ....++..+....++
T Consensus 279 DAAH~~~P~~GqG~n~gi~DA~~La~~La~~l~g~~~~~lL~~Ye~eR~~~-~~~~~~~~~~~~~~~ 344 (493)
T PRK08244 279 DAAHIHFPAGGQGLNVGLQDAMNLGWKLAAAIKGWAPDWLLDSYHAERHPV-GTALLRNTEVQTKLF 344 (493)
T ss_pred cceeccCCccccccccchhhHHHHHHHHHHHHcCCCCchhhhhhHHHHHHH-HHHHHHHhHHHHHHh
Confidence 9999999999999999999999999999887643 36799999988863 555555444444444
No 18
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=99.97 E-value=2.9e-28 Score=259.82 Aligned_cols=340 Identities=17% Similarity=0.152 Sum_probs=192.8
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCC--CCcccccCccChHHHHHhhHhhhhcCCCeeeeccC
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEV--GAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSS 183 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~--g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~ 183 (592)
|.+||+||||||+||++|+.|++. |++|+|+||.+.. ... ..++.+.++++ +++..+...+.........
T Consensus 1 ~~~dV~IvGaGpaGl~~A~~L~~~------G~~v~v~E~~~~~~~~~~-~~a~~l~~~~~-~~l~~lGl~~~l~~~~~~~ 72 (392)
T PRK08243 1 MRTQVAIIGAGPAGLLLGQLLHLA------GIDSVVLERRSREYVEGR-IRAGVLEQGTV-DLLREAGVGERMDREGLVH 72 (392)
T ss_pred CcceEEEECCCHHHHHHHHHHHhc------CCCEEEEEcCCccccccc-cceeEECHhHH-HHHHHcCChHHHHhcCCcc
Confidence 368999999999999999999999 9999999998742 111 23445777766 4444443211111111111
Q ss_pred CcEEEeecCCcc--cCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEE-cCCCcEEEEEeccCcccCCC
Q 007716 184 DKFWFLTKDRAF--SLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILY-DADNKVIGIGTNDMGIAKDG 260 (592)
Q Consensus 184 ~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~-~~~g~v~~V~~~d~g~~~~G 260 (592)
..+.+...+... +++..........+++..+.+.|.+.+++.|++++++++++++.. ++++ ..|++.+ +|
T Consensus 73 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~--~~V~~~~-----~G 145 (392)
T PRK08243 73 DGIELRFDGRRHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFDSDR--PYVTYEK-----DG 145 (392)
T ss_pred CcEEEEECCEEEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCc--eEEEEEc-----CC
Confidence 222222222111 221111112234567888999999998889999999999999876 3322 2455521 23
Q ss_pred CcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeeEEEEE-eecCCCCCCCcEEEEeccCCCCC
Q 007716 261 SKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVW-EIDEGKHNPGEILHTLGWPLDQK 339 (592)
Q Consensus 261 ~~~~~f~~g~~i~a~~vI~A~G~~s~vr~~l~~~~~l~~~~~~~~~~~~~g~~~~~-~i~~~~~~~g~~~~~~~~~~~~~ 339 (592)
+. .+++||+||+|||.+|.+|+++ +... .......+..+...+. +.++ ...... +. ..+.
T Consensus 146 ~~-------~~i~ad~vVgADG~~S~vR~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~---~~~~ 206 (392)
T PRK08243 146 EE-------HRLDCDFIAGCDGFHGVSRASI----PAGA-LRTFERVYPFGWLGILAEAPP---VSDELI-YA---NHER 206 (392)
T ss_pred eE-------EEEEeCEEEECCCCCCchhhhc----Ccch-hhceecccCceEEEEeCCCCC---CCCceE-Ee---eCCC
Confidence 21 5799999999999999999976 2221 0000111111221111 1111 111111 11 1111
Q ss_pred CcceEEEEEcCCCeEEEEEEecccCCCCCCCcHHHHHHhhc-Cc--cccccccCCceeeecceeeecCCccccCcccCCC
Q 007716 340 TYGGSFLYHMNDRQIALGLVVALNYHNPFLNPYEEFQKFKH-HP--AIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPG 416 (592)
Q Consensus 340 ~~g~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~~~~~~~~~-~p--~i~~~l~~~~~~~~~~~~i~~gg~~~~p~~~~~~ 416 (592)
+..++++.+++...+.+............+....+.+.. .+ ....++. ...... ...+.. ....++|..+|
T Consensus 207 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~--~~~~~~-~~~~~~~~~gr 280 (392)
T PRK08243 207 --GFALCSMRSPTRSRYYLQCPLDDKVEDWSDERFWDELRRRLPPEDAERLVT-GPSIEK--SIAPLR-SFVAEPMQYGR 280 (392)
T ss_pred --ceEEEecCCCCcEEEEEEecCCCCcccCChhHHHHHHHHhcCccccccccc-Cccccc--cceeee-eceeccceeCC
Confidence 224444444444444333322111111111111122221 01 0111111 111111 001111 11235677899
Q ss_pred EEEEcCCCcccCCCCccchHHHHHHHHHHHHHHhhhccC--CchHHHHHHHHHHhHHHHHHHHHHcchhhhh
Q 007716 417 GAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE--DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (592)
Q Consensus 417 v~LiGDAA~~~~P~~g~G~~~Am~dg~~aA~~l~~~~~~--~~~l~~Y~~~~~~~~~~~~l~~~r~~~~~~~ 486 (592)
++|||||||.++|+.|||+|+||+||..||+.|.+.++. ...|+.|++.++.+ +.+.++.++.+...++
T Consensus 281 vvLvGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~L~~Ye~~r~~r-~~~~~~~~~~~~~~~~ 351 (392)
T PRK08243 281 LFLAGDAAHIVPPTGAKGLNLAASDVRYLARALVEFYREGDTALLDAYSATALRR-VWKAERFSWWMTSMLH 351 (392)
T ss_pred EEEEecccccCCCCcCcchhHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999887543 46899999999976 7788888887777765
No 19
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.97 E-value=5.8e-28 Score=256.79 Aligned_cols=332 Identities=16% Similarity=0.140 Sum_probs=203.3
Q ss_pred cEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcc----cccCccChHHHHHhhHhhhhcCCCee-eeccC
Q 007716 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI----ISGNVFEPRALNELLPQWKQEEAPIR-VPVSS 183 (592)
Q Consensus 109 DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~----~~g~~i~~~~l~~ll~~~~~~~~~~~-~~~~~ 183 (592)
||+||||||+|+++|+.|++. |++|+|+||.+.++... ..+..+.+.++. .+..+...+.... .....
T Consensus 1 dViIvGaG~aGl~~A~~L~~~------G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~-~l~~lGl~~~~~~~~~~~~ 73 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARS------GLKIALIEATPAEAAATPGFDNRVSALSAASIR-LLEKLGVWDKIEPDRAQPI 73 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcC------CCEEEEEeCCCccccCCCCCCcceeecCHHHHH-HHHHCCchhhhhhhcCCCc
Confidence 799999999999999999999 99999999998754221 133456676553 3333322111111 11111
Q ss_pred CcEEEeecCC--cccCCCC--CCCCCcEEEcHHHHHHHHHHHHHHcC-CEEecCceEEEEEEcCCCcEEEEEeccCcccC
Q 007716 184 DKFWFLTKDR--AFSLPSP--FSNRGNYVISLSQLVRWLGGKAEELG-VEIYPGFAASEILYDADNKVIGIGTNDMGIAK 258 (592)
Q Consensus 184 ~~~~~~~~~~--~~~~~~~--~~~~~~~~v~~~~l~~~L~~~a~~~G-v~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~ 258 (592)
..+.+..... .+.++.. ......+.+++..|.+.|.+.+++.| ++|+++++|+++..+++ .+ .|++.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~-~~-~v~~~~----- 146 (385)
T TIGR01988 74 RDIHVSDGGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSD-HV-ELTLDD----- 146 (385)
T ss_pred eEEEEEeCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCC-ee-EEEECC-----
Confidence 2222222221 1222211 11223588999999999999999988 99999999999987763 33 466554
Q ss_pred CCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeeEEEEEeecCCCCCCCcEEEEeccCCCC
Q 007716 259 DGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQ 338 (592)
Q Consensus 259 ~G~~~~~f~~g~~i~a~~vI~A~G~~s~vr~~l~~~~~l~~~~~~~~~~~~~g~~~~~~i~~~~~~~g~~~~~~~~~~~~ 338 (592)
|.++.+|+||+|||.+|.+|+++ +++. .. ......++......+. .........+. +
T Consensus 147 ----------g~~~~~~~vi~adG~~S~vr~~l----~~~~-~~--~~~~~~~~~~~~~~~~--~~~~~~~~~~~----~ 203 (385)
T TIGR01988 147 ----------GQQLRARLLVGADGANSKVRQLA----GIPT-TG--WDYGQSAVVANVKHER--PHQGTAWERFT----P 203 (385)
T ss_pred ----------CCEEEeeEEEEeCCCCCHHHHHc----CCCc-cc--cccCCeEEEEEEEecC--CCCCEEEEEec----C
Confidence 56799999999999999999866 4432 01 1111122222222221 11222111111 1
Q ss_pred CCcceEEEEEcCCCeEEEEEEecccCCC--CCCCcHHHHHHhhc--CccccccccCCceeeecceeeecCCccccCcccC
Q 007716 339 KTYGGSFLYHMNDRQIALGLVVALNYHN--PFLNPYEEFQKFKH--HPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVF 414 (592)
Q Consensus 339 ~~~g~~~~~~~~~~~~~vg~~~~~~~~~--~~~~~~~~~~~~~~--~p~i~~~l~~~~~~~~~~~~i~~gg~~~~p~~~~ 414 (592)
. |..+++|..++...+.+........ ....+.+..+.+.. .+.+........ ....+. .....++|..
T Consensus 204 ~--g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~~ 275 (385)
T TIGR01988 204 T--GPLALLPLPDNRSSLVWTLPPEEAERLLALSDEEFLAELQRAFGSRLGAITLVGE-----RHAFPL-SLTHAKRYVA 275 (385)
T ss_pred C--CCEEEeECCCCCeEEEEECCHHHHHHHHcCCHHHHHHHHHHHHhhhcCceEeccC-----cceeec-hhhhhhheec
Confidence 1 3467889988887777665431100 01122222222221 011111100000 011111 1123467888
Q ss_pred CCEEEEcCCCcccCCCCccchHHHHHHHHHHHHHHhhhccC------CchHHHHHHHHHHhHHHHHHHHHHcchhhhh
Q 007716 415 PGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE------DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (592)
Q Consensus 415 ~~v~LiGDAA~~~~P~~g~G~~~Am~dg~~aA~~l~~~~~~------~~~l~~Y~~~~~~~~~~~~l~~~r~~~~~~~ 486 (592)
+|++|+|||||.++|+.|||+++||+||..||+.|...+.. ..+|+.|++.++.+ +...+..++.+..+|.
T Consensus 276 ~~v~LiGDAah~~~P~~G~G~~~Ai~da~~La~~L~~~~~~~~~~~~~~~l~~y~~~r~~~-~~~~~~~~~~~~~~~~ 352 (385)
T TIGR01988 276 PRLALIGDAAHTIHPLAGQGLNLGLRDVAALAEVLEDARRRGEDIGSPRVLQRYERRRRFD-NAAMLGATDGLNRLFS 352 (385)
T ss_pred CceEEEecccccCCccccchhhhhHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999876531 36899999999875 8888888888887774
No 20
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.97 E-value=5.1e-28 Score=258.40 Aligned_cols=336 Identities=18% Similarity=0.185 Sum_probs=204.2
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCc
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDK 185 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~ 185 (592)
+..||+||||||+||++|+.|++. |++|+|+||.+.++. ...|..+.+.++ +++..|.............+.
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~------g~~v~v~Er~~~~~~-~g~gi~l~~~~~-~~l~~lg~~~~~~~~~~~~~~ 74 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQ------GIKVKLLEQAAEIGE-IGAGIQLGPNAF-SALDALGVGEAARQRAVFTDH 74 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhC------CCcEEEEeeCccccc-ccceeeeCchHH-HHHHHcCChHHHHhhccCCcc
Confidence 468999999999999999999999 999999999987653 234555677765 333333321110011111222
Q ss_pred EEEeec--CCcc-cCCCC--C---CCCCcEEEcHHHHHHHHHHHHHHcC-CEEecCceEEEEEEcCCCcEEEEEeccCcc
Q 007716 186 FWFLTK--DRAF-SLPSP--F---SNRGNYVISLSQLVRWLGGKAEELG-VEIYPGFAASEILYDADNKVIGIGTNDMGI 256 (592)
Q Consensus 186 ~~~~~~--~~~~-~~~~~--~---~~~~~~~v~~~~l~~~L~~~a~~~G-v~i~~g~~v~~i~~~~~g~v~~V~~~d~g~ 256 (592)
+.+.+. +..+ .++.. . .....+.++|..|.+.|.+.+.+.+ ++++++++++++..++++ + .|++.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~-v-~v~~~~--- 149 (396)
T PRK08163 75 LTMMDAVDAEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDG-V-TVFDQQ--- 149 (396)
T ss_pred eEEEeCCCCCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCc-e-EEEEcC---
Confidence 222221 1110 11110 0 1112457899999999999998775 999999999999876543 3 355544
Q ss_pred cCCCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccce-eeEEEEEeecC--CCCCCCcEEEEec
Q 007716 257 AKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYA-LGIKEVWEIDE--GKHNPGEILHTLG 333 (592)
Q Consensus 257 ~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~vr~~l~~~~~l~~~~~~~~~~~~-~g~~~~~~i~~--~~~~~g~~~~~~~ 333 (592)
|.++.||+||+|||.+|.+|+.+. +.. +...+ ..+........ .....+....+.+
T Consensus 150 ------------g~~~~ad~vV~AdG~~S~~r~~~~---g~~------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g 208 (396)
T PRK08163 150 ------------GNRWTGDALIGCDGVKSVVRQSLV---GDA------PRVTGHVVYRAVIDVDDMPEDLRINAPVLWAG 208 (396)
T ss_pred ------------CCEEecCEEEECCCcChHHHhhcc---CCC------CCccccEEEEEEEeHHHCcchhccCccEEEEc
Confidence 568999999999999999998762 221 11111 11222222111 0001111111111
Q ss_pred cCCCCCCcceEEEEEcCCCe-EEEEEEecccCCC----CCCCcHHHHHHhhc-CccccccccCCceeeecceeeecCCcc
Q 007716 334 WPLDQKTYGGSFLYHMNDRQ-IALGLVVALNYHN----PFLNPYEEFQKFKH-HPAIKPLLEGGTVVQYGARTLNEGGLQ 407 (592)
Q Consensus 334 ~~~~~~~~g~~~~~~~~~~~-~~vg~~~~~~~~~----~~~~~~~~~~~~~~-~p~i~~~l~~~~~~~~~~~~i~~gg~~ 407 (592)
+ .+..+.||..++. +.+.+....+... ......+..+.|.. +|.+.++++....... ..+ ....
T Consensus 209 ----~--~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~ 278 (396)
T PRK08163 209 ----P--HCHLVHYPLRGGEQYNLVVTFHSREQEEWGVKDGSKEEVLSYFEGIHPRPRQMLDKPTSWKR--WAT--ADRE 278 (396)
T ss_pred ----C--CceEEEEEecCCeEEEEEEEECCCCCcccccCCCCHHHHHHHHcCCChHHHHHHhcCCceeE--ccc--cCCC
Confidence 1 1335678876553 3333332221111 11122233344443 5666666653322211 001 1123
Q ss_pred ccCcccCCCEEEEcCCCcccCCCCccchHHHHHHHHHHHHHHhhhccC-CchHHHHHHHHHHhHHHHHHHHHHcchhhhh
Q 007716 408 SIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE-DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (592)
Q Consensus 408 ~~p~~~~~~v~LiGDAA~~~~P~~g~G~~~Am~dg~~aA~~l~~~~~~-~~~l~~Y~~~~~~~~~~~~l~~~r~~~~~~~ 486 (592)
++++|+.+|++|+|||||.|+|+.|||+|+||+||..||++|...... ..+|+.|++.|+.+ +.+.+..++.+..+++
T Consensus 279 ~~~~~~~grv~LiGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~al~~y~~~R~~r-~~~~~~~s~~~~~~~~ 357 (396)
T PRK08163 279 PVAKWSTGRVTLLGDAAHPMTQYMAQGACMALEDAVTLGKALEGCDGDAEAAFALYESVRIPR-TARVVLSAREMGRIYH 357 (396)
T ss_pred cccccccCcEEEEecccccCCcchhccHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH-HHHHHHHHHHhHHhhC
Confidence 557888899999999999999999999999999999999999753222 46799999999976 8888888888877775
No 21
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.97 E-value=4.1e-28 Score=259.93 Aligned_cols=334 Identities=12% Similarity=0.107 Sum_probs=196.5
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCC-------cccccCccChHHHHHhhHhhhhcCCCee
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGA-------HIISGNVFEPRALNELLPQWKQEEAPIR 178 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~-------~~~~g~~i~~~~l~~ll~~~~~~~~~~~ 178 (592)
|.+||+||||||+|+++|+.|++. |++|+|+|+.+.... ....+..+.+.++ +++..+........
T Consensus 1 ~~~dV~IVGaG~aGl~~A~~L~~~------G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~-~~L~~lGl~~~l~~ 73 (405)
T PRK05714 1 MRADLLIVGAGMVGSALALALQGS------GLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQ-RILERLGAWDGIAA 73 (405)
T ss_pred CCccEEEECccHHHHHHHHHHhcC------CCEEEEEcCCCccccccccCCCCCccchhhhHHHH-HHHHHCChhhhhhH
Confidence 458999999999999999999998 999999999863111 0112445666665 33333322111000
Q ss_pred e-eccCCcEEEeecCC--cccCCCC--CCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEecc
Q 007716 179 V-PVSSDKFWFLTKDR--AFSLPSP--FSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTND 253 (592)
Q Consensus 179 ~-~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d 253 (592)
. ......+.+.+... .+.+... .....++.+++..+.+.|.+.+++.|++|++++++++++.++++ + .|++.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-v-~v~~~~ 151 (405)
T PRK05714 74 RRASPYSEMQVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDD-W-LLTLAD 151 (405)
T ss_pred hhCccceeEEEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCe-E-EEEECC
Confidence 0 01112222222221 1122111 11122578999999999999998889999999999999887654 3 466554
Q ss_pred CcccCCCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeeEEEEEeecCCCCCCCcEEEEec
Q 007716 254 MGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLG 333 (592)
Q Consensus 254 ~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~vr~~l~~~~~l~~~~~~~~~~~~~g~~~~~~i~~~~~~~g~~~~~~~ 333 (592)
|.+++||+||+|||.+|.+|+++ ++.. .. .......+.. .+.............+.
T Consensus 152 ---------------g~~~~a~~vVgAdG~~S~vR~~l----g~~~-~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 207 (405)
T PRK05714 152 ---------------GRQLRAPLVVAADGANSAVRRLA----GCAT-RE--WDYLHHAIVT--SVRCSEPHRATAWQRFT 207 (405)
T ss_pred ---------------CCEEEeCEEEEecCCCchhHHhc----CCCc-cc--ccCCceEEEE--EEEcCCCCCCEEEEEcC
Confidence 56899999999999999999975 4432 01 1111111111 11111111221111111
Q ss_pred cCCCCCCcceEEEEEcCCC----eEEEEEEecccCCCC--CCCcHHHH-HHhhc--CccccccccCCceeeecceeeecC
Q 007716 334 WPLDQKTYGGSFLYHMNDR----QIALGLVVALNYHNP--FLNPYEEF-QKFKH--HPAIKPLLEGGTVVQYGARTLNEG 404 (592)
Q Consensus 334 ~~~~~~~~g~~~~~~~~~~----~~~vg~~~~~~~~~~--~~~~~~~~-~~~~~--~p~i~~~l~~~~~~~~~~~~i~~g 404 (592)
+. |..+++|..++ ...+.+....+.... ... .+.+ +.+.. .+.+.+++.......| +..
T Consensus 208 ----~~--g~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----~l~ 275 (405)
T PRK05714 208 ----DD--GPLAFLPLERDGDEHWCSIVWSTTPEEAERLMALD-DDAFCAALERAFEGRLGEVLSADPRLCV-----PLR 275 (405)
T ss_pred ----CC--CCeEEeeCCCCCCCCeEEEEEECCHHHHHHHHCCC-HHHHHHHHHHHHHHHhCCceecCCccEE-----ecc
Confidence 11 34567887532 123333322211000 011 1111 11111 0112222221111111 111
Q ss_pred CccccCcccCCCEEEEcCCCcccCCCCccchHHHHHHHHHHHHHHhhhccC------CchHHHHHHHHHHhHHHHHHHHH
Q 007716 405 GLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE------DSNMEIYWDTLQKSWVWQELQRA 478 (592)
Q Consensus 405 g~~~~p~~~~~~v~LiGDAA~~~~P~~g~G~~~Am~dg~~aA~~l~~~~~~------~~~l~~Y~~~~~~~~~~~~l~~~ 478 (592)
....++|..+|++|+|||||.++|+.|||+|+||+||..||++|..+... ..+|+.|++.|+.+ +.+.+..+
T Consensus 276 -~~~~~~~~~~rv~LlGDAAH~~~P~~GQG~n~al~DA~~La~~L~~~~~~g~~~~~~~~L~~Ye~~R~~~-~~~~~~~~ 353 (405)
T PRK05714 276 -QRHAKRYVEPGLALIGDAAHTIHPLAGQGVNLGFLDAAVLAEVLLHAAERGERLADVRVLSRFERRRMPH-NLALMAAM 353 (405)
T ss_pred -eeehhhhccCCEEEEEeccccCCCcccccccHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH-HHHHHHHH
Confidence 12457899999999999999999999999999999999999999865421 25799999999876 88888888
Q ss_pred Hcchhhhh
Q 007716 479 RNYRPAFE 486 (592)
Q Consensus 479 r~~~~~~~ 486 (592)
+.+..+|+
T Consensus 354 ~~~~~~~~ 361 (405)
T PRK05714 354 EGFERLFQ 361 (405)
T ss_pred HHHHHHHC
Confidence 88877775
No 22
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.96 E-value=2.4e-28 Score=261.48 Aligned_cols=337 Identities=17% Similarity=0.139 Sum_probs=195.9
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCc-ccccCccChHHHHHhhHhhhhcCCCeeeeccCCcE
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAH-IISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~-~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~ 186 (592)
|||+||||||+||++|+.|++. ++|++|+|+||.+..... ...|..+.+.++ +++..+...+...........+
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~----g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~-~~l~~lGl~~~~~~~~~~~~~~ 76 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQA----APHLPVTVVDAAPAGAWSRDPRASAIAAAAR-RMLEALGVWDEIAPEAQPITDM 76 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcC----CCCCEEEEEeCCCcccCCCCcceEEecHHHH-HHHHHCCChhhhhhhcCcccEE
Confidence 7999999999999999999997 223999999998753221 135667777765 3333332211100001111122
Q ss_pred EEeecCCc-------ccCCCCC--CCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCccc
Q 007716 187 WFLTKDRA-------FSLPSPF--SNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIA 257 (592)
Q Consensus 187 ~~~~~~~~-------~~~~~~~--~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~ 257 (592)
.+.+.... +.+.... .....+.+++..+.+.|.+.+.+.|++++++++|+++..++++ + .|++.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-v-~v~~~~---- 150 (403)
T PRK07333 77 VITDSRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDEG-V-TVTLSD---- 150 (403)
T ss_pred EEEeCCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCE-E-EEEECC----
Confidence 22211100 1111000 1112467899999999999999999999999999999877643 3 466554
Q ss_pred CCCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeeEEEEEeecCCCCCCCcEEEEeccCCC
Q 007716 258 KDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLD 337 (592)
Q Consensus 258 ~~G~~~~~f~~g~~i~a~~vI~A~G~~s~vr~~l~~~~~l~~~~~~~~~~~~~g~~~~~~i~~~~~~~g~~~~~~~~~~~ 337 (592)
|.+++||+||+|||.+|.+|+++ ++.. ..... ...++.. .+.......+.....+.
T Consensus 151 -----------g~~~~ad~vI~AdG~~S~vr~~~----g~~~-~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~---- 206 (403)
T PRK07333 151 -----------GSVLEARLLVAADGARSKLRELA----GIKT-VGWDY--GQSGIVC--TVEHERPHGGRAEEHFL---- 206 (403)
T ss_pred -----------CCEEEeCEEEEcCCCChHHHHHc----CCCc-ccccC--CCEEEEE--EEEcCCCCCCEEEEEeC----
Confidence 56899999999999999988864 5542 01111 1112211 12111111122221211
Q ss_pred CCCcceEEEEEcCCCeEEEEEEecccCCCCC--CCcHHHHHHhhcCccccccccCCceeeecceeeecCCccccCcccCC
Q 007716 338 QKTYGGSFLYHMNDRQIALGLVVALNYHNPF--LNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFP 415 (592)
Q Consensus 338 ~~~~g~~~~~~~~~~~~~vg~~~~~~~~~~~--~~~~~~~~~~~~~p~i~~~l~~~~~~~~~~~~i~~gg~~~~p~~~~~ 415 (592)
.+ |..|++|..++..++.+....+..... .......+.+.. .+...+..-.... .....+. .....++|..+
T Consensus 207 ~~--g~~~~~Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~g 280 (403)
T PRK07333 207 PA--GPFAILPLKGNRSSLVWTERTADAERLVALDDLVFEAELEQ--RFGHRLGELKVLG-KRRAFPL-GLTLARSFVAP 280 (403)
T ss_pred CC--CceEEeECCCCCeEEEEECCHHHHHHHHCCCHHHHHHHHHH--HhhhhcCceEecc-CccEeec-hhhhhhhccCC
Confidence 11 346788998888776544322100000 011111111110 0000110000000 0011111 12345688899
Q ss_pred CEEEEcCCCcccCCCCccchHHHHHHHHHHHHHHhhhcc------CCchHHHHHHHHHHhHHHHHHHHHHcchhhhh
Q 007716 416 GGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLH------EDSNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (592)
Q Consensus 416 ~v~LiGDAA~~~~P~~g~G~~~Am~dg~~aA~~l~~~~~------~~~~l~~Y~~~~~~~~~~~~l~~~r~~~~~~~ 486 (592)
|++|||||||.++|+.|||+|+||+||..||++|...+. ....|+.|++.|+.. ....+..++.+..+|.
T Consensus 281 rv~LvGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Ye~~R~~~-~~~~~~~~~~~~~~~~ 356 (403)
T PRK07333 281 RFALVGDAAHGIHPIAGQGLNLGLKDVAALAEVVVEAARLGLDIGSLDVLERYQRWRRFD-TVRMGVTTDVLNRLFS 356 (403)
T ss_pred CEEEEechhhcCCCccccchhhhHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999987653 146899999977753 5555666666666664
No 23
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.96 E-value=5.3e-28 Score=259.87 Aligned_cols=340 Identities=14% Similarity=0.130 Sum_probs=194.3
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcc-cccCccChHHHHHhhHhhhhcCCCeeeeccCC
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI-ISGNVFEPRALNELLPQWKQEEAPIRVPVSSD 184 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~-~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~ 184 (592)
.++||+||||||||+++|+.|++. |++|+||||.+...... ..+..+.+.++ +++..++..+..........
T Consensus 17 ~~~dV~IvGaG~aGl~~A~~L~~~------G~~v~v~E~~~~~~~~~~g~~~~l~~~~~-~~L~~lGl~~~l~~~~~~~~ 89 (415)
T PRK07364 17 LTYDVAIVGGGIVGLTLAAALKDS------GLRIALIEAQPAEAAAAKGQAYALSLLSA-RIFEGIGVWEKILPQIGKFR 89 (415)
T ss_pred cccCEEEECcCHHHHHHHHHHhcC------CCEEEEEecCCccccCCCCcEEEechHHH-HHHHHCChhhhhHhhcCCcc
Confidence 469999999999999999999999 99999999988654221 22345777665 33333322111000011111
Q ss_pred cEEEeecCC--cccCCCC-C-CCCCcEEEcHHHHHHHHHHHHHHc-CCEEecCceEEEEEEcCCCcEEEEEeccCcccCC
Q 007716 185 KFWFLTKDR--AFSLPSP-F-SNRGNYVISLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGIAKD 259 (592)
Q Consensus 185 ~~~~~~~~~--~~~~~~~-~-~~~~~~~v~~~~l~~~L~~~a~~~-Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~ 259 (592)
.+.+.+... ...+... . .....+.+.+..+.+.|.+.+.+. ||++++++++++++.++++ + .|++.+ +
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~-~-~v~~~~-----~ 162 (415)
T PRK07364 90 QIRLSDADYPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDA-A-TVTLEI-----E 162 (415)
T ss_pred EEEEEeCCCCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe-e-EEEEcc-----C
Confidence 222222111 1112111 1 111235555557889999988775 6999999999999877644 3 355543 1
Q ss_pred CCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeeEEEEEeecCCCCCCCcEEEEeccCCCCC
Q 007716 260 GSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQK 339 (592)
Q Consensus 260 G~~~~~f~~g~~i~a~~vI~A~G~~s~vr~~l~~~~~l~~~~~~~~~~~~~g~~~~~~i~~~~~~~g~~~~~~~~~~~~~ 339 (592)
|. ..+++||+||+|||.+|.+|+++ ++.. .. .......+.. .+...........+.+ |+ .
T Consensus 163 ~~-------~~~i~adlvIgADG~~S~vR~~~----~~~~-~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~--~- 222 (415)
T PRK07364 163 GK-------QQTLQSKLVVAADGARSPIRQAA----GIKT-KG--WKYWQSCVTA--TVKHEAPHNDIAYERF-WP--S- 222 (415)
T ss_pred Cc-------ceEEeeeEEEEeCCCCchhHHHh----CCCc-ee--ecCCCEEEEE--EEEccCCCCCEEEEEe-cC--C-
Confidence 11 15799999999999999999865 4432 00 1111111221 2222211122222211 22 1
Q ss_pred CcceEEEEEcCCCeEEEEEEecccC-CC-CCCCcHHHHHHhhcCccccccccCCceeeecceeeecCCccccCcccCCCE
Q 007716 340 TYGGSFLYHMNDRQIALGLVVALNY-HN-PFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGG 417 (592)
Q Consensus 340 ~~g~~~~~~~~~~~~~vg~~~~~~~-~~-~~~~~~~~~~~~~~~p~i~~~l~~~~~~~~~~~~i~~gg~~~~p~~~~~~v 417 (592)
|..+++|.+++...+.+....+. .. ......+..+.++. .+...+...+.+.. ....+.. ....++|..+|+
T Consensus 223 --g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~rv 296 (415)
T PRK07364 223 --GPFAILPLPGNRCQIVWTAPHAQAKALLALPEAEFLAELQQ--RYGDQLGKLELLGD-RFLFPVQ-LMQSDRYVQHRL 296 (415)
T ss_pred --CCeEEeECCCCCEEEEEECCHHHHHHHHCCCHHHHHHHHHH--HhhhhhcCceecCC-Cceecch-hhhhhhhcCCcE
Confidence 33678898887776654432210 00 01111111111111 01111110011110 0011111 123467888999
Q ss_pred EEEcCCCcccCCCCccchHHHHHHHHHHHHHHhhhcc---C---CchHHHHHHHHHHhHHHHHHHHHHcchhhhh
Q 007716 418 AIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLH---E---DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (592)
Q Consensus 418 ~LiGDAA~~~~P~~g~G~~~Am~dg~~aA~~l~~~~~---~---~~~l~~Y~~~~~~~~~~~~l~~~r~~~~~~~ 486 (592)
+|||||||.++|+.|||+|+||+||..||++|...+. . ..+|+.|++.++.. ....++.++.+..+|.
T Consensus 297 ~LvGDAAh~~~P~~GqG~n~al~DA~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~-~~~~~~~s~~~~~~~~ 370 (415)
T PRK07364 297 ALVGDAAHCCHPVGGQGLNLGIRDAAALAQVLQTAHQRGEDIGSLAVLKRYERWRKRE-NWLILGFTDLLDRLFS 370 (415)
T ss_pred EEEecccccCCCcccccHhHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999987542 1 25799999988764 6666677776666664
No 24
>PRK06185 hypothetical protein; Provisional
Probab=99.96 E-value=1.2e-27 Score=256.53 Aligned_cols=339 Identities=16% Similarity=0.194 Sum_probs=201.7
Q ss_pred cccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHh---hhhcCCCeeeec
Q 007716 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQ---WKQEEAPIRVPV 181 (592)
Q Consensus 105 ~~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~---~~~~~~~~~~~~ 181 (592)
.+++||+||||||+|+++|+.|++. |++|+|||+.+.... ...+..+.+.++ +++.. |..........
T Consensus 4 ~~~~dV~IvGgG~~Gl~~A~~La~~------G~~v~liE~~~~~~~-~~r~~~l~~~s~-~~L~~lG~~~~~~~~~~~~- 74 (407)
T PRK06185 4 VETTDCCIVGGGPAGMMLGLLLARA------GVDVTVLEKHADFLR-DFRGDTVHPSTL-ELMDELGLLERFLELPHQK- 74 (407)
T ss_pred cccccEEEECCCHHHHHHHHHHHhC------CCcEEEEecCCccCc-cccCceeChhHH-HHHHHcCChhHHhhcccce-
Confidence 4679999999999999999999998 999999999864322 223556666654 33332 22211100000
Q ss_pred cCCcEEEeecCCcc---cCCCC-CCCCCcEEEcHHHHHHHHHHHHHHc-CCEEecCceEEEEEEcCCCcEEEEEeccCcc
Q 007716 182 SSDKFWFLTKDRAF---SLPSP-FSNRGNYVISLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGI 256 (592)
Q Consensus 182 ~~~~~~~~~~~~~~---~~~~~-~~~~~~~~v~~~~l~~~L~~~a~~~-Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~ 256 (592)
...+.+...+..+ ++... ......+.+.+..+.+.|.+.+.+. |++++++++|+++..++ +.+.+|.+..
T Consensus 75 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~-~~v~~v~~~~--- 149 (407)
T PRK06185 75 -VRTLRFEIGGRTVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEG-GRVTGVRART--- 149 (407)
T ss_pred -eeeEEEEECCeEEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeC-CEEEEEEEEc---
Confidence 1112222211111 11110 1112246788999999999998775 89999999999998876 5565666542
Q ss_pred cCCCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeeEEEEEeecCCCCCCCcEEEEeccCC
Q 007716 257 AKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPL 336 (592)
Q Consensus 257 ~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~vr~~l~~~~~l~~~~~~~~~~~~~g~~~~~~i~~~~~~~g~~~~~~~~~~ 336 (592)
.+|+ .+++||+||+|||.+|.+|+++ ++.. ...+ +...+ ....++.....++.....+
T Consensus 150 -~~g~--------~~i~a~~vI~AdG~~S~vr~~~----gi~~--~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~---- 207 (407)
T PRK06185 150 -PDGP--------GEIRADLVVGADGRHSRVRALA----GLEV--REFG--APMDV-LWFRLPREPDDPESLMGRF---- 207 (407)
T ss_pred -CCCc--------EEEEeCEEEECCCCchHHHHHc----CCCc--cccC--CCcee-EEEecCCCCCCCcccceEe----
Confidence 1121 4799999999999999988865 5542 1111 11111 1112332211111122222
Q ss_pred CCCCcceEEEEEcCCCeEEEEEEecccCCCCC-CCcHHHHH-Hhh-cCccccccccCCceeeecceeeecCCccccCccc
Q 007716 337 DQKTYGGSFLYHMNDRQIALGLVVALNYHNPF-LNPYEEFQ-KFK-HHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPV 413 (592)
Q Consensus 337 ~~~~~g~~~~~~~~~~~~~vg~~~~~~~~~~~-~~~~~~~~-~~~-~~p~i~~~l~~~~~~~~~~~~i~~gg~~~~p~~~ 413 (592)
.++ |..+++|.+ +...+++..+.+..... ....++|. .+. ..|.+.+.+...+... ....++. .....++|.
T Consensus 208 ~~~--g~~~llP~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~-~~~~~~l-~~~~~~~~~ 282 (407)
T PRK06185 208 GPG--QGLIMIDRG-DYWQCGYVIPKGGYAALRAAGLEAFRERVAELAPELADRVAELKSWD-DVKLLDV-RVDRLRRWH 282 (407)
T ss_pred cCC--cEEEEEcCC-CeEEEEEEecCCCchhhhhhhHHHHHHHHHHhCccHHHHHhhcCCcc-ccEEEEE-ecccccccc
Confidence 111 445677876 67778777654322111 11122222 222 1344444343211111 0011111 122446788
Q ss_pred CCCEEEEcCCCcccCCCCccchHHHHHHHHHHHHHHhhhccC----CchHHHHHHHHHHhHHHHHHHHHHcchhhh
Q 007716 414 FPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE----DSNMEIYWDTLQKSWVWQELQRARNYRPAF 485 (592)
Q Consensus 414 ~~~v~LiGDAA~~~~P~~g~G~~~Am~dg~~aA~~l~~~~~~----~~~l~~Y~~~~~~~~~~~~l~~~r~~~~~~ 485 (592)
.+|++|+|||||.++|..|||+|+||+|+..||+.|.+.+.. ...|+.|++.|+.. ....+...+.+..+|
T Consensus 283 ~~rv~LvGDAAh~~~P~~GqG~nlgl~Da~~La~~l~~~~~~~~~~~~~L~~Y~~~R~~~-~~~~~~~~~~~~~~~ 357 (407)
T PRK06185 283 RPGLLCIGDAAHAMSPVGGVGINLAIQDAVAAANILAEPLRRGRVSDRDLAAVQRRREFP-TRVTQALQRRIQRRL 357 (407)
T ss_pred CCCeEEEeccccccCcccccchhHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHhhhH-HHHHHHHHHHHHHhh
Confidence 899999999999999999999999999999999999876543 26799999998865 666666666555555
No 25
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.96 E-value=7.8e-28 Score=256.63 Aligned_cols=334 Identities=16% Similarity=0.132 Sum_probs=193.3
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCccc----ccCccChHHHHHhhHh---hhhcCCCee
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII----SGNVFEPRALNELLPQ---WKQEEAPIR 178 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~----~g~~i~~~~l~~ll~~---~~~~~~~~~ 178 (592)
+.+||+||||||+|+++|+.|++. |++|+||||.+....... ....+.+.++ +++.. |.......
T Consensus 5 ~~~dV~IvGaG~aGl~~A~~La~~------G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~-~~l~~lGl~~~~~~~~- 76 (392)
T PRK08773 5 SRRDAVIVGGGVVGAACALALADA------GLSVALVEGREPPRWQADQPDLRVYAFAADNA-ALLDRLGVWPAVRAAR- 76 (392)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcC------CCEEEEEeCCCCcccccCCCCCEEEEecHHHH-HHHHHCCchhhhhHhh-
Confidence 468999999999999999999999 999999999875432111 1123566655 33333 22211100
Q ss_pred eeccCCcEEEeec--CCcccCCCC--CCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccC
Q 007716 179 VPVSSDKFWFLTK--DRAFSLPSP--FSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDM 254 (592)
Q Consensus 179 ~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~ 254 (592)
......+.+.+. ...+.++.. ....-.|++++..|.+.|.+.+++.|++++++++|+++..++++ + .|++.+
T Consensus 77 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~-v-~v~~~~- 152 (392)
T PRK08773 77 -AQPYRRMRVWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDADR-V-RLRLDD- 152 (392)
T ss_pred -CCcccEEEEEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCe-E-EEEECC-
Confidence 011112222221 111222211 11123688999999999999999999999999999999877643 3 466554
Q ss_pred cccCCCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeeEEEEEeecCCCCCCCcEEEEecc
Q 007716 255 GIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGW 334 (592)
Q Consensus 255 g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~vr~~l~~~~~l~~~~~~~~~~~~~g~~~~~~i~~~~~~~g~~~~~~~~ 334 (592)
|.+++||+||+|||.+|.+++.+ ++.. . .......++... +.......+.....+.
T Consensus 153 --------------g~~~~a~~vV~AdG~~S~vr~~~----g~~~--~-~~~~~~~~~~~~--v~~~~~~~~~~~~~~~- 208 (392)
T PRK08773 153 --------------GRRLEAALAIAADGAASTLRELA----GLPV--S-RHDYAQRGVVAF--VDTEHPHQATAWQRFL- 208 (392)
T ss_pred --------------CCEEEeCEEEEecCCCchHHHhh----cCCc--e-EEEeccEEEEEE--EEccCCCCCEEEEEeC-
Confidence 56899999999999999988865 4442 0 011111233222 2221112222222221
Q ss_pred CCCCCCcceEEEEEcCCCeEEEEEEecccCCCC--CCCcHHHHHHhhcCccccccccCCceeeecceeeecCCccccCcc
Q 007716 335 PLDQKTYGGSFLYHMNDRQIALGLVVALNYHNP--FLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYP 412 (592)
Q Consensus 335 ~~~~~~~g~~~~~~~~~~~~~vg~~~~~~~~~~--~~~~~~~~~~~~~~p~i~~~l~~~~~~~~~~~~i~~gg~~~~p~~ 412 (592)
.. |...++|.+++...+.+..+.+.... ..+..+..+.+.. .+...+...+.... ....+. .....++|
T Consensus 209 --~~---g~~~~lP~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~-~~~~~l-~~~~~~~~ 279 (392)
T PRK08773 209 --PT---GPLALLPFADGRSSIVWTLPDAEAERVLALDEAAFSRELTQ--AFAARLGEVRVASP-RTAFPL-RRQLVQQY 279 (392)
T ss_pred --CC---CcEEEEECCCCceEEEEECCHHHHHHHHcCCHHHHHHHHHH--HHhhhhcCeEecCC-ccEeec-hhhhhhhh
Confidence 11 33567888777776665543211000 0111111111110 01111110000000 001111 11245688
Q ss_pred cCCCEEEEcCCCcccCCCCccchHHHHHHHHHHHHHHhhhccC------CchHHHHHHHHHHhHHHHHHHHHHcchhhh
Q 007716 413 VFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE------DSNMEIYWDTLQKSWVWQELQRARNYRPAF 485 (592)
Q Consensus 413 ~~~~v~LiGDAA~~~~P~~g~G~~~Am~dg~~aA~~l~~~~~~------~~~l~~Y~~~~~~~~~~~~l~~~r~~~~~~ 485 (592)
..+|++|+|||||.++|+.|||+|+||+||..||++|.+.+.. ...|++|++.|+.. ....+.....+.++|
T Consensus 280 ~~~rv~LiGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~l~~y~~~R~~~-~~~~~~~~~~l~~~f 357 (392)
T PRK08773 280 VSGRVLTLGDAAHVVHPLAGQGVNLGLRDVAALQQLVRQAHARRADWAAPHRLQRWARTRRSD-NTVAAYGFDAINRVF 357 (392)
T ss_pred cCCcEEEEechhhcCCCchhchhhhhHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999876532 26799999998864 333333334444444
No 26
>PRK06847 hypothetical protein; Provisional
Probab=99.96 E-value=1.6e-27 Score=252.75 Aligned_cols=328 Identities=20% Similarity=0.175 Sum_probs=194.1
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHh-----hHhhhhcCCCeeeec
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNEL-----LPQWKQEEAPIRVPV 181 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l-----l~~~~~~~~~~~~~~ 181 (592)
..||+||||||+||++|+.|++. |++|+|+||.+.... ...|..+.+.++..+ ++.+.....+
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~------g~~v~v~E~~~~~~~-~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~----- 71 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRA------GIAVDLVEIDPEWRV-YGAGITLQGNALRALRELGVLDECLEAGFG----- 71 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhC------CCCEEEEecCCCCcc-CCceeeecHHHHHHHHHcCCHHHHHHhCCC-----
Confidence 57899999999999999999999 999999999876533 223445666655322 1112111111
Q ss_pred cCCcEEEeecCCcc--cCCCC----CCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCc
Q 007716 182 SSDKFWFLTKDRAF--SLPSP----FSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMG 255 (592)
Q Consensus 182 ~~~~~~~~~~~~~~--~~~~~----~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g 255 (592)
...+.+.+..... .++.. ........++|..|.+.|.+.+++.|++|+++++|+++..++++ + .|.+.+
T Consensus 72 -~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-~-~v~~~~-- 146 (375)
T PRK06847 72 -FDGVDLFDPDGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDG-V-TVTFSD-- 146 (375)
T ss_pred -ccceEEECCCCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCE-E-EEEEcC--
Confidence 1122222211110 11110 00122456889999999999999999999999999999876633 3 466554
Q ss_pred ccCCCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeeEEEEEeecCCCCCCCcEEEEeccC
Q 007716 256 IAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWP 335 (592)
Q Consensus 256 ~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~vr~~l~~~~~l~~~~~~~~~~~~~g~~~~~~i~~~~~~~g~~~~~~~~~ 335 (592)
|.++.+|+||+|||.+|.+|+++. +... .+...+...... .++....... ...+.+
T Consensus 147 -------------g~~~~ad~vI~AdG~~s~~r~~l~---~~~~----~~~~~g~~~~~~-~~~~~~~~~~-~~~~~~-- 202 (375)
T PRK06847 147 -------------GTTGRYDLVVGADGLYSKVRSLVF---PDEP----EPEYTGQGVWRA-VLPRPAEVDR-SLMYLG-- 202 (375)
T ss_pred -------------CCEEEcCEEEECcCCCcchhhHhc---CCCC----CceeccceEEEE-EecCCCCccc-eEEEeC--
Confidence 578999999999999999998762 2221 122222222110 1222111111 111211
Q ss_pred CCCCCcceEEEEEcCCCeEEEEEEecccCCCCCCCcH---HHHHH-hhc-Cc-cccccc---cCCceeeecceeeecCCc
Q 007716 336 LDQKTYGGSFLYHMNDRQIALGLVVALNYHNPFLNPY---EEFQK-FKH-HP-AIKPLL---EGGTVVQYGARTLNEGGL 406 (592)
Q Consensus 336 ~~~~~~g~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~---~~~~~-~~~-~p-~i~~~l---~~~~~~~~~~~~i~~gg~ 406 (592)
++ +...++|..++...+-+..... ........ +.++. +.. ++ .+..+. .....+.+ .+....
T Consensus 203 --~~--~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 273 (375)
T PRK06847 203 --PT--TKAGVVPLSEDLMYLFVTEPRP-DNPRIEPDTLAALLRELLAPFGGPVLQELREQITDDAQVVY----RPLETL 273 (375)
T ss_pred --CC--cEEEEEcCCCCeEEEEEeccCc-ccccCChHHHHHHHHHHHhhcCchHHHHHHHhcCCccceee----ccHhhc
Confidence 11 2244567666544433222211 11112211 11221 111 11 222221 11111111 111111
Q ss_pred cccCcccCCCEEEEcCCCcccCCCCccchHHHHHHHHHHHHHHhhhccCCchHHHHHHHHHHhHHHHHHHHHHcchhhh
Q 007716 407 QSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHEDSNMEIYWDTLQKSWVWQELQRARNYRPAF 485 (592)
Q Consensus 407 ~~~p~~~~~~v~LiGDAA~~~~P~~g~G~~~Am~dg~~aA~~l~~~~~~~~~l~~Y~~~~~~~~~~~~l~~~r~~~~~~ 485 (592)
...++|..+|++|||||||.++|+.|||+|+||+||..||+.|.+......+|+.|++.|+.+ +...+..++.....+
T Consensus 274 ~~~~~~~~grv~LiGDAaH~~~P~~GqG~n~aieDA~~La~~L~~~~~~~~al~~Y~~~R~~r-~~~~~~~s~~~~~~~ 351 (375)
T PRK06847 274 LVPAPWHRGRVVLIGDAAHATTPHLAQGAGMAIEDAIVLAEELARHDSLEAALQAYYARRWER-CRMVVEASARIGRIE 351 (375)
T ss_pred cCCCCccCCeEEEEechhccCCCCccccHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHH-HHHHHHHHHHhhhee
Confidence 123568889999999999999999999999999999999999976432246899999999876 888888888777665
No 27
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.96 E-value=1.3e-27 Score=264.61 Aligned_cols=340 Identities=16% Similarity=0.126 Sum_probs=199.4
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCc
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDK 185 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~ 185 (592)
+.+||+||||||+||++|+.|++. |++|+||||...+... ..+..+.++++ +++..+...+...........
T Consensus 9 ~~~dV~IVGaGp~Gl~lA~~L~~~------G~~v~v~Er~~~~~~~-~ra~~l~~~~~-~~L~~lGl~~~l~~~~~~~~~ 80 (538)
T PRK06183 9 HDTDVVIVGAGPVGLTLANLLGQY------GVRVLVLERWPTLYDL-PRAVGIDDEAL-RVLQAIGLADEVLPHTTPNHG 80 (538)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHC------CCcEEEEecCCCCCCC-CceeeeCHHHH-HHHHHcCChhHHHhhcccCCc
Confidence 468999999999999999999999 9999999999865432 23456677665 333333221110111111112
Q ss_pred EEEeecCCc--ccCCCC----CCCCCcEEEcHHHHHHHHHHHHHHc-CCEEecCceEEEEEEcCCCcEEEEEeccCcccC
Q 007716 186 FWFLTKDRA--FSLPSP----FSNRGNYVISLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGIAK 258 (592)
Q Consensus 186 ~~~~~~~~~--~~~~~~----~~~~~~~~v~~~~l~~~L~~~a~~~-Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~ 258 (592)
+.+.+.... ..++.. ......+.+.+..+.+.|.+.+.+. |++|+++++|++++.++++ | .|++.+ .
T Consensus 81 ~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~-v-~v~~~~----~ 154 (538)
T PRK06183 81 MRFLDAKGRCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDG-V-TVTLTD----A 154 (538)
T ss_pred eEEEcCCCCEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCe-E-EEEEEc----C
Confidence 222221111 111110 0011235678899999999998875 8999999999999988755 3 355543 2
Q ss_pred CCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeeEEEEEeecCCCCCCCcEEEEeccCCCC
Q 007716 259 DGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQ 338 (592)
Q Consensus 259 ~G~~~~~f~~g~~i~a~~vI~A~G~~s~vr~~l~~~~~l~~~~~~~~~~~~~g~~~~~~i~~~~~~~g~~~~~~~~~~~~ 338 (592)
+|+. .+++||+||+|||++|.+|+.+ ++.. ........++.+. + ...............+ .+
T Consensus 155 ~G~~-------~~i~ad~vVgADG~~S~vR~~l----g~~~-~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~----~~ 216 (538)
T PRK06183 155 DGQR-------ETVRARYVVGCDGANSFVRRTL----GVPF-EDLTFPERWLVVD-V-LIANDPLGGPHTYQYC----DP 216 (538)
T ss_pred CCCE-------EEEEEEEEEecCCCchhHHHHc----CCee-eCCCccceEEEEE-E-ecccCccCCCceEEEE----CC
Confidence 3432 6899999999999999999976 4442 1111111111111 0 1111111111111111 11
Q ss_pred CCcceEEEEEcCCCeEEEEEEecccCCCCCCCcHHHHHHh-hcCccccccccCCceeeecceeeecCCccccCcccCCCE
Q 007716 339 KTYGGSFLYHMNDRQIALGLVVALNYHNPFLNPYEEFQKF-KHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGG 417 (592)
Q Consensus 339 ~~~g~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~~~~~~~-~~~p~i~~~l~~~~~~~~~~~~i~~gg~~~~p~~~~~~v 417 (592)
+ +...+++..++...+.+....+.........+.++.+ ..... . ....+.+.. ..........++|..+|+
T Consensus 217 ~--~~~~~~p~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~--~~~~~~~~~---~~~~~~~~~a~~~~~gRv 288 (538)
T PRK06183 217 A--RPYTSVRLPHGRRRWEFMLLPGETEEQLASPENVWRLLAPWGP-T--PDDAELIRH---AVYTFHARVADRWRSGRV 288 (538)
T ss_pred C--CCEEEEEcCCCeEEEEEEeCCCCChhhcCCHHHHHHHHHhhCC-C--CcceEEEEE---EeeeEccEEhhhhccCCE
Confidence 1 2245667766665554443221111111112222222 11100 0 000011111 000001123467888999
Q ss_pred EEEcCCCcccCCCCccchHHHHHHHHHHHHHHhhhccC---CchHHHHHHHHHHhHHHHHHHHHHcchhhhh
Q 007716 418 AIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE---DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (592)
Q Consensus 418 ~LiGDAA~~~~P~~g~G~~~Am~dg~~aA~~l~~~~~~---~~~l~~Y~~~~~~~~~~~~l~~~r~~~~~~~ 486 (592)
+|+|||||.++|+.|||+|+||+||..||+.|...+.. ...|+.|+++|+.. +.+.++.++.+..++.
T Consensus 289 ~L~GDAAH~~~P~~GQG~n~gi~DA~~La~kLa~~~~g~~~~~~L~~Ye~eR~p~-~~~~~~~s~~~~~~~~ 359 (538)
T PRK06183 289 LLAGDAAHLMPPFAGQGMNSGIRDAANLAWKLAAVLRGRAGDALLDTYEQERRPH-ARAMIDLAVRLGRVIC 359 (538)
T ss_pred EEEechhhcCCCccccchhhhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HHHHHHHHHHhhhhcc
Confidence 99999999999999999999999999999999865543 36899999999976 8888888888777763
No 28
>PRK07588 hypothetical protein; Provisional
Probab=99.96 E-value=2.2e-27 Score=252.99 Aligned_cols=335 Identities=14% Similarity=0.055 Sum_probs=192.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcEE
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~~ 187 (592)
.||+||||||+||++|+.|++. |++|+|+||.+.... ...+..+.+.++ +++..+...+...........+.
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~------G~~v~v~E~~~~~~~-~g~~~~l~~~~~-~~l~~lGl~~~l~~~~~~~~~~~ 72 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRY------GHEPTLIERAPELRT-GGYMVDFWGVGY-EVAKRMGITDQLREAGYQIEHVR 72 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHC------CCceEEEeCCCCccC-CCeEEeccCcHH-HHHHHcCCHHHHHhccCCccceE
Confidence 3799999999999999999999 999999999876432 111223344443 22222211000000001111222
Q ss_pred EeecCCc-c-cCCC--CCC--CCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCC
Q 007716 188 FLTKDRA-F-SLPS--PFS--NRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGS 261 (592)
Q Consensus 188 ~~~~~~~-~-~~~~--~~~--~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~ 261 (592)
+.+.... + .++. ... ....+.++|..|.+.|.+.+. .|++|+++++|++++.++++ + .|++.+
T Consensus 73 ~~~~~g~~~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~-~~v~i~~~~~v~~i~~~~~~-v-~v~~~~-------- 141 (391)
T PRK07588 73 SVDPTGRRKADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAID-GQVETIFDDSIATIDEHRDG-V-RVTFER-------- 141 (391)
T ss_pred EEcCCCCEEEEecHHHccccCCCceEEEEHHHHHHHHHHhhh-cCeEEEeCCEEeEEEECCCe-E-EEEECC--------
Confidence 2221111 1 1110 001 112467999999999988664 47999999999999887643 3 366654
Q ss_pred cccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeeEEEEEeecCCCCCCCcEEEEeccCCCCCCc
Q 007716 262 KKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTY 341 (592)
Q Consensus 262 ~~~~f~~g~~i~a~~vI~A~G~~s~vr~~l~~~~~l~~~~~~~~~~~~~g~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~ 341 (592)
|.++++|+||+|||.+|.+|+.+ ++... ......+..+. ...+.............+ . .++
T Consensus 142 -------g~~~~~d~vIgADG~~S~vR~~~---~~~~~---~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~--~-~~g-- 202 (391)
T PRK07588 142 -------GTPRDFDLVIGADGLHSHVRRLV---FGPER---DFEHYLGCKVA-ACVVDGYRPRDERTYVLY--N-EVG-- 202 (391)
T ss_pred -------CCEEEeCEEEECCCCCccchhhc---cCCcc---ceEEEcCcEEE-EEEcCCCCCCCCceEEEE--e-CCC--
Confidence 56789999999999999999865 22221 01111111111 111111111112111111 1 111
Q ss_pred ceEEEEEcCCCeEEEEEEecccCCCCCCCcHHHHH----HhhcC-cc---ccccccCCceeeecceeeecCCccccCccc
Q 007716 342 GGSFLYHMNDRQIALGLVVALNYHNPFLNPYEEFQ----KFKHH-PA---IKPLLEGGTVVQYGARTLNEGGLQSIPYPV 413 (592)
Q Consensus 342 g~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~~~~~----~~~~~-p~---i~~~l~~~~~~~~~~~~i~~gg~~~~p~~~ 413 (592)
+...++|..++...+.+....+...+..+.....+ .+... +. +...+.....+.+ .......+++|.
T Consensus 203 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~w~ 277 (391)
T PRK07588 203 RQVARVALRGDRTLFLFIFRAEHDNPPLTPAEEKQLLRDQFGDVGWETPDILAALDDVEDLYF-----DVVSQIRMDRWS 277 (391)
T ss_pred CEEEEEecCCCCeEEEEEEEcCCccccCCHHHHHHHHHHHhccCCccHHHHHHhhhcccchhe-----eeeeeeccCccc
Confidence 23557787666655544443322222222222112 22211 11 2122221111111 001112456888
Q ss_pred CCCEEEEcCCCcccCCCCccchHHHHHHHHHHHHHHhhhccC-CchHHHHHHHHHHhHHHHHHHHHHcchhhhh
Q 007716 414 FPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE-DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (592)
Q Consensus 414 ~~~v~LiGDAA~~~~P~~g~G~~~Am~dg~~aA~~l~~~~~~-~~~l~~Y~~~~~~~~~~~~l~~~r~~~~~~~ 486 (592)
.+|++|||||||.|+|+.|||+|+||+||..||+.|...... ..+|+.|++.|+.+ +...+..++.+..+|+
T Consensus 278 ~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~~~~~~~~al~~Y~~~R~~~-~~~~~~~~~~~~~~~~ 350 (391)
T PRK07588 278 RGRVALVGDAAACPSLLGGEGSGLAITEAYVLAGELARAGGDHRRAFDAYEKRLRPF-IAGKQAAAAKFLSVFA 350 (391)
T ss_pred cCCEEEEEccccCCCCccCCcHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH-HHHHHhhccccccccc
Confidence 999999999999999999999999999999999999764322 46799999999976 8888888888877775
No 29
>PRK09126 hypothetical protein; Provisional
Probab=99.96 E-value=7.3e-28 Score=256.83 Aligned_cols=336 Identities=17% Similarity=0.152 Sum_probs=199.1
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCC--cccccC--ccChHHHHHhhHhhhhcCCCeeee-
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGA--HIISGN--VFEPRALNELLPQWKQEEAPIRVP- 180 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~--~~~~g~--~i~~~~l~~ll~~~~~~~~~~~~~- 180 (592)
|++||+||||||+|+++|+.|++. |++|+|+||.+.... ....|. .+.+.++ +++..+...+......
T Consensus 2 ~~~dviIvGgG~aGl~~A~~L~~~------G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~-~~L~~lGl~~~~~~~~~ 74 (392)
T PRK09126 2 MHSDIVVVGAGPAGLSFARSLAGS------GLKVTLIERQPLAALADPAFDGREIALTHASR-EILQRLGAWDRIPEDEI 74 (392)
T ss_pred CcccEEEECcCHHHHHHHHHHHhC------CCcEEEEeCCCcccccCCCCchhHHHhhHHHH-HHHHHCCChhhhccccC
Confidence 579999999999999999999999 999999999876431 112232 3455554 4444443211111100
Q ss_pred ccCCcEEEeecCC--cccCCCCC--CCCCcEEEcHHHHHHHHHHHHHH-cCCEEecCceEEEEEEcCCCcEEEEEeccCc
Q 007716 181 VSSDKFWFLTKDR--AFSLPSPF--SNRGNYVISLSQLVRWLGGKAEE-LGVEIYPGFAASEILYDADNKVIGIGTNDMG 255 (592)
Q Consensus 181 ~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~v~~~~l~~~L~~~a~~-~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g 255 (592)
.....+.+.+... .+.++... ....++.+++..+.+.|.+.+.+ .|++|+++++|++++.++++ + .|.+.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~-~-~v~~~~-- 150 (392)
T PRK09126 75 SPLRDAKVLNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDG-A-QVTLAN-- 150 (392)
T ss_pred CccceEEEEcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCe-E-EEEEcC--
Confidence 0111222222211 12222111 11225778999999999988754 68999999999999876643 3 466654
Q ss_pred ccCCCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeeEEEEEeecCCCCCCCcEEEEeccC
Q 007716 256 IAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWP 335 (592)
Q Consensus 256 ~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~vr~~l~~~~~l~~~~~~~~~~~~~g~~~~~~i~~~~~~~g~~~~~~~~~ 335 (592)
|.+++||+||+|||.+|.+|+.+ ++.. ....++..+. +..+.......+...++++
T Consensus 151 -------------g~~~~a~~vI~AdG~~S~vr~~~----g~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-- 206 (392)
T PRK09126 151 -------------GRRLTARLLVAADSRFSATRRQL----GIGA----DMHDFGRTML-VCRMRHELPHHHTAWEWFG-- 206 (392)
T ss_pred -------------CCEEEeCEEEEeCCCCchhhHhc----CCCc----cccccCCeEE-EEEEeccCCCCCEEEEEec--
Confidence 57899999999999999999876 4432 0111111110 1112111111222233332
Q ss_pred CCCCCcceEEEEEcCCCeEEEEEEecccCCCC--CCCcHHHHH-HhhcCccccccccCCceeeecceeeecCCccccCcc
Q 007716 336 LDQKTYGGSFLYHMNDRQIALGLVVALNYHNP--FLNPYEEFQ-KFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYP 412 (592)
Q Consensus 336 ~~~~~~g~~~~~~~~~~~~~vg~~~~~~~~~~--~~~~~~~~~-~~~~~p~i~~~l~~~~~~~~~~~~i~~gg~~~~p~~ 412 (592)
.+ +..|+||..++.+.+++..+.+.... ... .+.+. .+.. .+...+........ ....+... ...++|
T Consensus 207 --~~--~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~--~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~ 277 (392)
T PRK09126 207 --YG--QTLALLPLNGHLSSLVLTLPPDQIEALLALD-PEAFAAEVTA--RFKGRLGAMRLVSS-RHAYPLVA-VYAHRF 277 (392)
T ss_pred --CC--CCeEEeECCCCCEEEEEECCHHHHHHHHcCC-HHHHHHHHHH--HHhhhccCeEEcCC-CcEeechH-HHHHHH
Confidence 11 23678899888777776554321000 111 11111 1110 01111110010000 00011111 134678
Q ss_pred cCCCEEEEcCCCcccCCCCccchHHHHHHHHHHHHHHhhhccC------CchHHHHHHHHHHhHHHHHHHHHHcchhhhh
Q 007716 413 VFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE------DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (592)
Q Consensus 413 ~~~~v~LiGDAA~~~~P~~g~G~~~Am~dg~~aA~~l~~~~~~------~~~l~~Y~~~~~~~~~~~~l~~~r~~~~~~~ 486 (592)
..+|++|+|||||.++|+.|||+++||+||..||++|...+.. ...|+.|++.++.. +...+..++.+..++.
T Consensus 278 ~~~rv~LvGDAAh~~~P~~GqG~~~ai~da~~la~~L~~~~~~~~~~~~~~~l~~Y~~~r~~~-~~~~~~~~~~~~~~~~ 356 (392)
T PRK09126 278 VAKRFALIGDAAVGMHPVTAHGFNLGLKGQDILARLILAAARRGQDIGAASLLERYERKHRLA-TRPLYHATNAIAALYT 356 (392)
T ss_pred hhcceEEEehhhhcCCCcccchhhhhHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHC
Confidence 8899999999999999999999999999999999999887531 25799999999876 7777777777777664
No 30
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.96 E-value=2.1e-27 Score=263.72 Aligned_cols=340 Identities=17% Similarity=0.180 Sum_probs=193.1
Q ss_pred ccccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccC
Q 007716 104 ESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSS 183 (592)
Q Consensus 104 ~~~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~ 183 (592)
..+.+||+||||||+||++|+.|++. |++|+||||.+.+... ..+.++.++++ +++..+...+.........
T Consensus 20 ~~~~~dVlIVGaGpaGl~lA~~L~~~------G~~v~viE~~~~~~~~-~ra~~l~~~~~-~~l~~lGl~~~l~~~~~~~ 91 (547)
T PRK08132 20 DPARHPVVVVGAGPVGLALAIDLAQQ------GVPVVLLDDDDTLSTG-SRAICFAKRSL-EIFDRLGCGERMVDKGVSW 91 (547)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHhC------CCcEEEEeCCCCCCCC-CeEEEEcHHHH-HHHHHcCCcHHHHhhCcee
Confidence 34679999999999999999999999 9999999999865321 23456777766 4444433211100000000
Q ss_pred Cc-EEEeecCCcccCCC--CC-CCC-CcEEEcHHHHHHHHHHHHHHc-CCEEecCceEEEEEEcCCCcEEEEEeccCccc
Q 007716 184 DK-FWFLTKDRAFSLPS--PF-SNR-GNYVISLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGIA 257 (592)
Q Consensus 184 ~~-~~~~~~~~~~~~~~--~~-~~~-~~~~v~~~~l~~~L~~~a~~~-Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~ 257 (592)
.. ..+........+.. .. ... ..+.+.+..+.+.|.+.+.+. |++|+++++++++..++++.. +.+.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~--v~~~~---- 165 (547)
T PRK08132 92 NVGKVFLRDEEVYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVT--LTVET---- 165 (547)
T ss_pred eceeEEeCCCeEEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEE--EEEEC----
Confidence 00 01111111111110 00 111 134478899999999999876 699999999999988775422 33322
Q ss_pred CCCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeeEEEEEeecCCCCCCCcEEEEeccCCC
Q 007716 258 KDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLD 337 (592)
Q Consensus 258 ~~G~~~~~f~~g~~i~a~~vI~A~G~~s~vr~~l~~~~~l~~~~~~~~~~~~~g~~~~~~i~~~~~~~g~~~~~~~~~~~ 337 (592)
.+| ..+++||+||+|||.+|.+|+.+ ++.. ......... +.....+.. ..+.....+++.+..
T Consensus 166 ~~g--------~~~i~ad~vVgADG~~S~vR~~l----g~~~-~g~~~~~~~--~~~d~~~~~--~~~~~~~~~~~~~~~ 228 (547)
T PRK08132 166 PDG--------PYTLEADWVIACDGARSPLREML----GLEF-EGRTFEDRF--LIADVKMKA--DFPTERWFWFDPPFH 228 (547)
T ss_pred CCC--------cEEEEeCEEEECCCCCcHHHHHc----CCCC-CCccccceE--EEEEEEecC--CCCCeeeEEEeccCC
Confidence 112 14799999999999999999865 5543 111111111 110011111 122222233332222
Q ss_pred CCCcceEEEEEcCCCeEEEEEEecccCC-CCCCCcHHHHHHhhcCccccccccCCce--eeecceeeecCCccccCcccC
Q 007716 338 QKTYGGSFLYHMNDRQIALGLVVALNYH-NPFLNPYEEFQKFKHHPAIKPLLEGGTV--VQYGARTLNEGGLQSIPYPVF 414 (592)
Q Consensus 338 ~~~~g~~~~~~~~~~~~~vg~~~~~~~~-~~~~~~~~~~~~~~~~p~i~~~l~~~~~--~~~~~~~i~~gg~~~~p~~~~ 414 (592)
++ ...++++..++...+.+....+.. .....+ +.+. +.+++++..... +.+. .+........++|..
T Consensus 229 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~l~~~~~~~~~~~~~~~--~~~~~~~~~a~~~~~ 298 (547)
T PRK08132 229 PG--QSVLLHRQPDNVWRIDFQLGWDADPEAEKKP-ENVI-----PRVRALLGEDVPFELEWV--SVYTFQCRRMDRFRH 298 (547)
T ss_pred CC--cEEEEEeCCCCeEEEEEecCCCCCchhhcCH-HHHH-----HHHHHHcCCCCCeeEEEE--Eeeeeeeeeeccccc
Confidence 22 234555666655554433221110 001111 1111 112222221111 1110 000011224568889
Q ss_pred CCEEEEcCCCcccCCCCccchHHHHHHHHHHHHHHhhhccC---CchHHHHHHHHHHhHHHHHHHHHHcchhhh
Q 007716 415 PGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE---DSNMEIYWDTLQKSWVWQELQRARNYRPAF 485 (592)
Q Consensus 415 ~~v~LiGDAA~~~~P~~g~G~~~Am~dg~~aA~~l~~~~~~---~~~l~~Y~~~~~~~~~~~~l~~~r~~~~~~ 485 (592)
+||+|+|||||.++|+.|||+|+||+||..||+.|...+.. ...|+.|+++|+.. ..+.++.++.....+
T Consensus 299 gRV~L~GDAAH~~~P~~GqG~n~gi~DA~~LawkLa~vl~g~~~~~lL~~Ye~eR~p~-~~~~~~~s~~~~~~~ 371 (547)
T PRK08132 299 GRVLFAGDAAHQVSPFGARGANSGIQDADNLAWKLALVLRGRAPDSLLDSYASEREFA-ADENIRNSTRSTDFI 371 (547)
T ss_pred ccEEEEecccccCCCcccccccchHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999876644 36899999999864 555566655554444
No 31
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.96 E-value=1.2e-27 Score=254.35 Aligned_cols=331 Identities=18% Similarity=0.201 Sum_probs=196.2
Q ss_pred cEEEECCCHHHHHHHHHHHHhhhhcCCC-CcEEEEcCCCCCCCcc---cccCccChHHHHHhhHhhhhcCCCeeeeccCC
Q 007716 109 DVVIVGAGPAGLSAAIRLKQLCREKNVD-LSVCVVEKGAEVGAHI---ISGNVFEPRALNELLPQWKQEEAPIRVPVSSD 184 (592)
Q Consensus 109 DVvIVGaG~aGl~aA~~La~~~~~~~~g-~~V~vlEk~~~~g~~~---~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~ 184 (592)
||+||||||+|+++|+.|++. | ++|+|+||.+...... ..+..+.+.++ +++..+..............
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~------G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~-~~l~~lgl~~~~~~~~~~~~ 73 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRL------GKIKIALIEANSPSAAQPGFDARSLALSYGSK-QILEKLGLWPKLAPFATPIL 73 (382)
T ss_pred CEEEECccHHHHHHHHHHhcC------CCceEEEEeCCCccccCCCCCCeeEeccHHHH-HHHHHCCChhhhHhhcCccc
Confidence 799999999999999999999 9 9999999987654321 13456777665 33333322111000011111
Q ss_pred cEEEeecC--CcccCCC--CCCCCCcEEEcHHHHHHHHHHHHHHc-CCEEecCceEEEEEEcCCCcEEEEEeccCcccCC
Q 007716 185 KFWFLTKD--RAFSLPS--PFSNRGNYVISLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGIAKD 259 (592)
Q Consensus 185 ~~~~~~~~--~~~~~~~--~~~~~~~~~v~~~~l~~~L~~~a~~~-Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~ 259 (592)
.+.+.... ....+.. .......|.++|..|.+.|.+.+.+. |++++++++|+++..++++ + .|++.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~-~-~v~~~~------ 145 (382)
T TIGR01984 74 DIHVSDQGHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDY-V-RVTLDN------ 145 (382)
T ss_pred eEEEEcCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCe-E-EEEECC------
Confidence 22222211 1111110 01112258899999999999999984 9999999999999877643 3 466544
Q ss_pred CCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccc-eeeEEEEEeecCCCCCCCcEEEEeccCCCC
Q 007716 260 GSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTY-ALGIKEVWEIDEGKHNPGEILHTLGWPLDQ 338 (592)
Q Consensus 260 G~~~~~f~~g~~i~a~~vI~A~G~~s~vr~~l~~~~~l~~~~~~~~~~~-~~g~~~~~~i~~~~~~~g~~~~~~~~~~~~ 338 (592)
|.+++||+||+|||.+|.+|+++ ++.. . ...+ ...+........ .........++ .
T Consensus 146 ---------g~~~~ad~vV~AdG~~S~vr~~l----~~~~--~--~~~~~~~~~~~~~~~~~--~~~~~~~~~~~----~ 202 (382)
T TIGR01984 146 ---------GQQLRAKLLIAADGANSKVRELL----SIPT--E--EHDYNQTALIANIRHEQ--PHQGCAFERFT----P 202 (382)
T ss_pred ---------CCEEEeeEEEEecCCChHHHHHc----CCCC--c--ccccCCEEEEEEEEecC--CCCCEEEEeeC----C
Confidence 56899999999999999988865 4442 1 1122 122222222211 11222222221 1
Q ss_pred CCcceEEEEEcCCC-eEEEEEEecccCCCC--CCCcHHHHHHhhc--CccccccccCCceeeecceeeecCCccccCccc
Q 007716 339 KTYGGSFLYHMNDR-QIALGLVVALNYHNP--FLNPYEEFQKFKH--HPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPV 413 (592)
Q Consensus 339 ~~~g~~~~~~~~~~-~~~vg~~~~~~~~~~--~~~~~~~~~~~~~--~p~i~~~l~~~~~~~~~~~~i~~gg~~~~p~~~ 413 (592)
. |..+++|.+++ ...+.+....+.... .....+..+.+.. .+.+..+........+ +.. ....++|.
T Consensus 203 ~--g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~ 274 (382)
T TIGR01984 203 H--GPLALLPLKDNYRSSLVWCLPSKQADTIANLPDAEFLAELQQAFGWRLGKITQVGERKTY-----PLK-LRIAETHV 274 (382)
T ss_pred C--CCeEECcCCCCCCEEEEEECCHHHHHHHHcCCHHHHHHHHHHHHhhhccCeEEcCCccEe-----ecc-hhhhhhee
Confidence 1 23567787776 555544433211000 1111111122211 1111111110111111 111 12356788
Q ss_pred CCCEEEEcCCCcccCCCCccchHHHHHHHHHHHHHHhhhccC---CchHHHHHHHHHHhHHHHHHHHHHcchhhhh
Q 007716 414 FPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE---DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (592)
Q Consensus 414 ~~~v~LiGDAA~~~~P~~g~G~~~Am~dg~~aA~~l~~~~~~---~~~l~~Y~~~~~~~~~~~~l~~~r~~~~~~~ 486 (592)
.+|++|+|||||.++|+.|||+|+||+||..||++|...... ...|+.|++.++.. ....++.++.+..+|.
T Consensus 275 ~~rv~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~l~~Y~~~r~~~-~~~~~~~~~~~~~~~~ 349 (382)
T TIGR01984 275 HPRVVLIGNAAQTLHPIAGQGFNLGLRDVETLAEVLIDARIDLGTYALLQEYLRRRQFD-QFITIGLTDGLNRLFS 349 (382)
T ss_pred cCCEEEEeecccccCCccccchhhhHHHHHHHHHHHHHhccCccCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHc
Confidence 899999999999999999999999999999999999876422 36799999999865 6666777777777774
No 32
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=99.96 E-value=2.2e-27 Score=256.39 Aligned_cols=341 Identities=16% Similarity=0.131 Sum_probs=198.6
Q ss_pred ccEEEECCCHHHHHHHHHHHH----hhhhcCCCCcEEEEcCCCCCCCc-----------ccccCccChHHHHHhhHhhhh
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQ----LCREKNVDLSVCVVEKGAEVGAH-----------IISGNVFEPRALNELLPQWKQ 172 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~----~~~~~~~g~~V~vlEk~~~~g~~-----------~~~g~~i~~~~l~~ll~~~~~ 172 (592)
|||+||||||+|+++|+.|++ . |++|+||||.+.+... ...+..+.++++ +++..+..
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~------G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~-~~L~~lG~ 73 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTK------DLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASI-SFFKKIGA 73 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccC------CCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHH-HHHHHcCc
Confidence 699999999999999999998 7 9999999995432211 112445667665 33333221
Q ss_pred cCCCeee-eccCCcEEEeecCC--cccCCCCC-CCCCcEEEcHHHHHHHHHHHHHHcC---CEEecCceEEEEEEc----
Q 007716 173 EEAPIRV-PVSSDKFWFLTKDR--AFSLPSPF-SNRGNYVISLSQLVRWLGGKAEELG---VEIYPGFAASEILYD---- 241 (592)
Q Consensus 173 ~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~v~~~~l~~~L~~~a~~~G---v~i~~g~~v~~i~~~---- 241 (592)
....... ......+.+.+... .+.++... .....+++++..|.+.|.+.+++.+ ++++++++|++++.+
T Consensus 74 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~ 153 (437)
T TIGR01989 74 WDHIQSDRIQPFGRMQVWDGCSLALIRFDRDNGKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYP 153 (437)
T ss_pred hhhhhhhcCCceeeEEEecCCCCceEEeecCCCCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccc
Confidence 1100000 00111222222211 12222111 1122678999999999999998875 999999999999753
Q ss_pred -CCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeeEEEEEeecC
Q 007716 242 -ADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDE 320 (592)
Q Consensus 242 -~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~vr~~l~~~~~l~~~~~~~~~~~~~g~~~~~~i~~ 320 (592)
+++..+.|++.+ |.+++||+||+|||++|.+|+++ +++. ....+.. .++...+....
T Consensus 154 ~~~~~~v~v~~~~---------------g~~i~a~llVgADG~~S~vR~~~----gi~~-~g~~y~q--~~~v~~v~~~~ 211 (437)
T TIGR01989 154 NDNSNWVHITLSD---------------GQVLYTKLLIGADGSNSNVRKAA----NIDT-TGWNYNQ--HAVVATLKLEE 211 (437)
T ss_pred cCCCCceEEEEcC---------------CCEEEeeEEEEecCCCChhHHHc----CCCc-cceeecc--EEEEEEEEccc
Confidence 222223566654 67899999999999999999966 5553 1111111 12211122211
Q ss_pred CCCCCCcEEEEeccCCCCCCcceEEEEEcCCCeEEEEEEecccCCCC--CCCcHHHHHHhhc--------Ccc-------
Q 007716 321 GKHNPGEILHTLGWPLDQKTYGGSFLYHMNDRQIALGLVVALNYHNP--FLNPYEEFQKFKH--------HPA------- 383 (592)
Q Consensus 321 ~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~vg~~~~~~~~~~--~~~~~~~~~~~~~--------~p~------- 383 (592)
. ...+.....+. .. |...++|..++...+.+......... .+++.+..+.+.. .|.
T Consensus 212 ~-~~~~~~~~~f~---~~---g~~~~lPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~ 284 (437)
T TIGR01989 212 A-TENDVAWQRFL---PT---GPIALLPLPDNNSTLVWSTSPEEALRLLSLPPEDFVDALNAAFDLGYSDHPYSYLLDYA 284 (437)
T ss_pred C-CCCCeEEEEEC---CC---CCEEEeECCCCCEEEEEeCCHHHHHHHHcCCHHHHHHHHHHHhcccccccccccccccc
Confidence 1 12222222221 22 33567788887777665543221000 1111111111100 000
Q ss_pred ccccccC------Cc------------eeeecceeeecCCccccCcccCCCEEEEcCCCcccCCCCccchHHHHHHHHHH
Q 007716 384 IKPLLEG------GT------------VVQYGARTLNEGGLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLA 445 (592)
Q Consensus 384 i~~~l~~------~~------------~~~~~~~~i~~gg~~~~p~~~~~~v~LiGDAA~~~~P~~g~G~~~Am~dg~~a 445 (592)
+..+++. ++ ........++. .....++|..+|++|+|||||.++|..|||+|+||+||..|
T Consensus 285 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~rv~l~GDAAH~~~P~~GqG~n~~l~Da~~L 363 (437)
T TIGR01989 285 MEKLNEDIGFRTEGSKSCFQVPPRVIGVVDKSRAAFPL-GLGHADEYVTKRVALVGDAAHRVHPLAGQGVNLGFGDVASL 363 (437)
T ss_pred cccccccccccccccccccccCchhheeecccceeEEe-cccchhhccCCCEEEEchhhcCCCCChhhhHHHHHHHHHHH
Confidence 0000000 00 00000011111 22345678889999999999999999999999999999999
Q ss_pred HHHHhhhccC------CchHHHHHHHHHHhHHHHHHHHHHcchhhhh
Q 007716 446 AEAGFGVLHE------DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (592)
Q Consensus 446 A~~l~~~~~~------~~~l~~Y~~~~~~~~~~~~l~~~r~~~~~~~ 486 (592)
|+.|.+.... ...|+.|++.|+.. ....+...+.+..+|.
T Consensus 364 a~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~-~~~v~~~t~~l~~l~~ 409 (437)
T TIGR01989 364 VKALAEAVSVGADIGSISSLKPYERERYAK-NVVLLGLVDKLHKLYA 409 (437)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHc
Confidence 9999876543 24799999999875 7778888887777774
No 33
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=99.96 E-value=2.1e-27 Score=252.78 Aligned_cols=343 Identities=16% Similarity=0.119 Sum_probs=184.4
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCC-CcccccCccChHHHHHhhHhhhhcCCCeeeeccCC
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVG-AHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSD 184 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g-~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~ 184 (592)
|.+||+||||||+|+++|+.|++. |++|+||||.+... .....++.+.+.++ +++..+...+.........+
T Consensus 1 ~~~dV~IVGaG~aGl~~A~~L~~~------G~~v~viE~~~~~~~~~~~~a~~l~~~~~-~~L~~lGl~~~l~~~~~~~~ 73 (390)
T TIGR02360 1 MKTQVAIIGAGPSGLLLGQLLHKA------GIDNVILERQSRDYVLGRIRAGVLEQGTV-DLLREAGVDERMDREGLVHE 73 (390)
T ss_pred CCceEEEECccHHHHHHHHHHHHC------CCCEEEEECCCCcccCCceeEeeECHHHH-HHHHHCCChHHHHhcCceec
Confidence 468999999999999999999999 99999999987521 11123344676655 33333221100000001111
Q ss_pred cEEEeecCCc--ccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCc
Q 007716 185 KFWFLTKDRA--FSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSK 262 (592)
Q Consensus 185 ~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~ 262 (592)
.+.+...... ++++............+..+.+.|.+.+.+.|++++++.+++.+...++.. ..|++.+ +|+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~-~~V~~~~-----~g~- 146 (390)
T TIGR02360 74 GTEIAFDGQRFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDR-PYVTFER-----DGE- 146 (390)
T ss_pred ceEEeeCCEEEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCc-cEEEEEE-----CCe-
Confidence 2222221111 112211111112234577889999999988899999999888876533222 2455531 122
Q ss_pred ccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeeEEEEEeecCCCCCCCcEEEEeccCCCCCCcc
Q 007716 263 KENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYG 342 (592)
Q Consensus 263 ~~~f~~g~~i~a~~vI~A~G~~s~vr~~l~~~~~l~~~~~~~~~~~~~g~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~g 342 (592)
..+++||+||+|||.+|.+|+++ +... .......+..+...+. +......... .+.+. ..
T Consensus 147 ------~~~i~adlvIGADG~~S~VR~~l----~~~~-~~~~~~~~~~~~~~l~--~~~~~~~~~~-~~~~~---~~--- 206 (390)
T TIGR02360 147 ------RHRLDCDFIAGCDGFHGVSRASI----PAEV-LKEFERVYPFGWLGIL--SETPPVSHEL-IYSNH---ER--- 206 (390)
T ss_pred ------EEEEEeCEEEECCCCchhhHHhc----Cccc-ceeeeccCCcceEEEe--cCCCCCCCce-EEEeC---CC---
Confidence 14799999999999999999976 2221 0000111111221111 1111111111 11111 11
Q ss_pred eEEEEEcCC-CeEEEEEEecccCCCCCCCcHHHHHHhhc--CccccccccCCceeeecceeeecCCccccCcccCCCEEE
Q 007716 343 GSFLYHMND-RQIALGLVVALNYHNPFLNPYEEFQKFKH--HPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAI 419 (592)
Q Consensus 343 ~~~~~~~~~-~~~~vg~~~~~~~~~~~~~~~~~~~~~~~--~p~i~~~l~~~~~~~~~~~~i~~gg~~~~p~~~~~~v~L 419 (592)
+..+++..+ +...+-+....+............+.++. .+.+.+.+..+..... ...+... ...++|..+|++|
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~~~~grvvL 283 (390)
T TIGR02360 207 GFALCSMRSATRSRYYVQVPLTDKVEDWSDDRFWAELKRRLPSEAAERLVTGPSIEK--SIAPLRS-FVCEPMQYGRLFL 283 (390)
T ss_pred ceEEEeccCCCcceEEEEcCCCCChhhCChhHHHHHHHHhcCchhhhhhccCCccce--eeeeHHh-hccccCccCCEEE
Confidence 122334321 11111112211100000110011111111 1222222221111110 1111111 1235678899999
Q ss_pred EcCCCcccCCCCccchHHHHHHHHHHHHHHhhhccC--CchHHHHHHHHHHhHHHHHHHHHHcchhhhh
Q 007716 420 IGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE--DSNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (592)
Q Consensus 420 iGDAA~~~~P~~g~G~~~Am~dg~~aA~~l~~~~~~--~~~l~~Y~~~~~~~~~~~~l~~~r~~~~~~~ 486 (592)
||||||.++|+.|||+|+||+||..||++|...... ..+|+.|++.++.+ +....+.++.+..+++
T Consensus 284 vGDAAH~~~P~~GQG~n~aieDA~~La~~L~~~~~~~~~~al~~Y~~~R~~r-~~~~~~~s~~~~~~~~ 351 (390)
T TIGR02360 284 AGDAAHIVPPTGAKGLNLAASDVHYLYEALLEHYQEGSSAGIEGYSARALAR-VWKAERFSWWMTSLLH 351 (390)
T ss_pred EEccccCCCCCcCCchhHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999875432 46899999998876 7788888888877764
No 34
>PRK05868 hypothetical protein; Validated
Probab=99.96 E-value=3e-27 Score=249.87 Aligned_cols=333 Identities=16% Similarity=0.089 Sum_probs=190.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcEE
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~~ 187 (592)
.||+||||||+||++|+.|++. |++|+||||.+.... ...+..+.+.++ +.+..+...............+.
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~------G~~v~viE~~~~~~~-~g~~i~~~~~a~-~~L~~lGl~~~~~~~~~~~~~~~ 73 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRH------GYSVTMVERHPGLRP-GGQAIDVRGPAL-DVLERMGLLAAAQEHKTRIRGAS 73 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhC------CCCEEEEcCCCCCCC-CceeeeeCchHH-HHHHhcCCHHHHHhhccCccceE
Confidence 3799999999999999999999 999999999876542 122334455554 33333221100000001111222
Q ss_pred EeecCCc-ccC-----CC-CCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCC
Q 007716 188 FLTKDRA-FSL-----PS-PFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDG 260 (592)
Q Consensus 188 ~~~~~~~-~~~-----~~-~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G 260 (592)
+.+.+.. +.. +. .......+.+.|..|.+.|.+.+ ..|++++++++|++++.+++ .| .|++.|
T Consensus 74 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~-~~~v~i~~~~~v~~i~~~~~-~v-~v~~~d------- 143 (372)
T PRK05868 74 FVDRDGNELFRDTESTPTGGPVNSPDIELLRDDLVELLYGAT-QPSVEYLFDDSISTLQDDGD-SV-RVTFER------- 143 (372)
T ss_pred EEeCCCCEEeecccccccCCCCCCceEEEEHHHHHHHHHHhc-cCCcEEEeCCEEEEEEecCC-eE-EEEECC-------
Confidence 2221111 100 00 01112246788999998876543 46899999999999987653 33 466655
Q ss_pred CcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeeEE-EEEeecCCCCCCCcEEEEeccCCCCC
Q 007716 261 SKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIK-EVWEIDEGKHNPGEILHTLGWPLDQK 339 (592)
Q Consensus 261 ~~~~~f~~g~~i~a~~vI~A~G~~s~vr~~l~~~~~l~~~~~~~~~~~~~g~~-~~~~i~~~~~~~g~~~~~~~~~~~~~ 339 (592)
|.+++||+||+|||.+|.+|+.+ ++... .....+|.. ..+.++... ..+....+ .+..+
T Consensus 144 --------g~~~~adlvIgADG~~S~vR~~~---~~~~~-----~~~~~~g~~~~~~~~~~~~-~~~~~~~~---~~g~~ 203 (372)
T PRK05868 144 --------AAAREFDLVIGADGLHSNVRRLV---FGPEE-----QFVKRLGTHAAIFTVPNFL-ELDYWQTW---HYGDS 203 (372)
T ss_pred --------CCeEEeCEEEECCCCCchHHHHh---cCCcc-----cceeecceEEEEEEcCCCC-CCCcceEE---EecCC
Confidence 67899999999999999999987 23221 111122222 222333211 11111111 11122
Q ss_pred CcceEEEEEcCCC-eEEEEEEeccc---CCCCCC-CcHHHH-HHhhcC----ccccccccCCceeeecceeeecCCcccc
Q 007716 340 TYGGSFLYHMNDR-QIALGLVVALN---YHNPFL-NPYEEF-QKFKHH----PAIKPLLEGGTVVQYGARTLNEGGLQSI 409 (592)
Q Consensus 340 ~~g~~~~~~~~~~-~~~vg~~~~~~---~~~~~~-~~~~~~-~~~~~~----p~i~~~l~~~~~~~~~~~~i~~gg~~~~ 409 (592)
. ...+|+..++ .....+....+ ...... ...+++ +.|... +.+.+.+.......+ +......+
T Consensus 204 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~w~~~~l~~~~~~~~~~~~-----~~~~~~~~ 276 (372)
T PRK05868 204 T--MAGVYSARNNTEARAALAFMDTELRIDYRDTEAQFAELQRRMAEDGWVRAQLLHYMRSAPDFYF-----DEMSQILM 276 (372)
T ss_pred c--EEEEEecCCCCceEEEEEEecCCcccccCChHHHHHHHHHHHhhCCCchHHHHhhcccCCceee-----ccceEEec
Confidence 1 1345665543 32322222111 110000 011222 222211 222222222111111 11112356
Q ss_pred CcccCCCEEEEcCCCcccCCCCccchHHHHHHHHHHHHHHhhhcc-CCchHHHHHHHHHHhHHHHHHHHHHcchhhhh
Q 007716 410 PYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLH-EDSNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (592)
Q Consensus 410 p~~~~~~v~LiGDAA~~~~P~~g~G~~~Am~dg~~aA~~l~~~~~-~~~~l~~Y~~~~~~~~~~~~l~~~r~~~~~~~ 486 (592)
++|+.+|++|+|||||.+.|+.|||+++||+||..||++|..... -..+|+.||+.+|.. +.+..+..+.....|.
T Consensus 277 ~~w~~grv~LvGDAAH~~~P~~GqGa~~AleDa~~La~~L~~~~~~~~~al~~ye~~~~~~-~~~~q~~~~~~~~~~~ 353 (372)
T PRK05868 277 DRWSRGRVALVGDAGYCCSPLSGQGTSVALLGAYILAGELKAAGDDYQLGFANYHAEFHGF-VERNQWLVSDNIPGGA 353 (372)
T ss_pred CCCCCCCeeeeecccccCCCccCccHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhHH-HHHhhhhhhccCCccc
Confidence 799999999999999999999999999999999999999976432 257899999999864 8888888888877774
No 35
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=99.96 E-value=6.8e-27 Score=261.60 Aligned_cols=349 Identities=15% Similarity=0.168 Sum_probs=198.7
Q ss_pred ccccEEEECCCHHHHHHHHHHHH-hhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCC
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQ-LCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSD 184 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~-~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~ 184 (592)
.++||+||||||+||++|+.|++ . |++|+||||.+.... ...+..+.++++ |+|..+...+..........
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~~------Gi~v~IiE~~~~~~~-~grA~gl~prtl-eiL~~lGl~d~l~~~g~~~~ 102 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAFP------DITTRIVERKPGRLE-LGQADGIACRTM-EMFQAFGFAERILKEAYWIN 102 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcCC------CCcEEEEEcCCCCCC-CCeeeEEChHHH-HHHHhccchHHHHhhccccc
Confidence 46899999999999999999999 6 999999999875322 223556788877 45444332211111111111
Q ss_pred cEEEeecCC----c-------ccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcC--CEEecCceEEEEEEcCCC-cEEEEE
Q 007716 185 KFWFLTKDR----A-------FSLPSPFSNRGNYVISLSQLVRWLGGKAEELG--VEIYPGFAASEILYDADN-KVIGIG 250 (592)
Q Consensus 185 ~~~~~~~~~----~-------~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G--v~i~~g~~v~~i~~~~~g-~v~~V~ 250 (592)
.+.+..... . ...+......+...+++..+.+.|.+.+.+.| +++.++++++++..++++ .-+.|+
T Consensus 103 ~~~~~~~~~~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~ 182 (634)
T PRK08294 103 ETAFWKPDPADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVT 182 (634)
T ss_pred ceEEEcCCCccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEE
Confidence 111111100 0 01111111122457899999999999998876 578999999999876532 222455
Q ss_pred eccCcccCCCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeeEEEEEeecCCCCCCCcEEE
Q 007716 251 TNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILH 330 (592)
Q Consensus 251 ~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~vr~~l~~~~~l~~~~~~~~~~~~~g~~~~~~i~~~~~~~g~~~~ 330 (592)
+.+....++|+. .+++||+||+|||++|.||+++ ++... . .......++..+.... ..+.....
T Consensus 183 l~~~~~~~~g~~-------~tv~A~~lVGaDGa~S~VR~~l----gi~~~-G-~~~~~~~~v~dv~~~~---~~p~~~~~ 246 (634)
T PRK08294 183 LRRTDGEHEGEE-------ETVRAKYVVGCDGARSRVRKAI----GRELR-G-DSANHAWGVMDVLAVT---DFPDIRLK 246 (634)
T ss_pred EEECCCCCCCce-------EEEEeCEEEECCCCchHHHHhc----CCCcc-C-CcccceEEEEEEEEcc---CCCCcceE
Confidence 543110112321 6899999999999999999976 55431 1 1111222332221111 12221111
Q ss_pred EeccCCCCCCcceEEEEEcCCCe-EEEEEEecc-cCC----CCCCCcHHHHHHhhc--CccccccccCCceeee-cceee
Q 007716 331 TLGWPLDQKTYGGSFLYHMNDRQ-IALGLVVAL-NYH----NPFLNPYEEFQKFKH--HPAIKPLLEGGTVVQY-GARTL 401 (592)
Q Consensus 331 ~~~~~~~~~~~g~~~~~~~~~~~-~~vg~~~~~-~~~----~~~~~~~~~~~~~~~--~p~i~~~l~~~~~~~~-~~~~i 401 (592)
...+ .. ..|...++|.+++. +.+.+.... +.. ....++.+..+.++. .|...+. +.+.| ....+
T Consensus 247 ~~~~-~~--~~g~~~~~P~~~g~~~r~~~~~~~~~~~~~~~~~~~t~e~l~~~~~~~~~p~~~~~----~~v~w~s~y~i 319 (634)
T PRK08294 247 CAIQ-SA--SEGSILLIPREGGYLVRLYVDLGEVPPDERVAVRNTTVEEVIAKAQRILHPYTLDV----KEVAWWSVYEV 319 (634)
T ss_pred EEEe-cC--CCceEEEEECCCCeEEEEEEecCcCCCccccccccCCHHHHHHHHHHhcCCCCCce----eEEeEEecccc
Confidence 1101 11 12445678887763 444332211 100 112233333333322 1211111 11111 11000
Q ss_pred ec---CCccccC---c-ccCCCEEEEcCCCcccCCCCccchHHHHHHHHHHHHHHhhhccC---CchHHHHHHHHHHhHH
Q 007716 402 NE---GGLQSIP---Y-PVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE---DSNMEIYWDTLQKSWV 471 (592)
Q Consensus 402 ~~---gg~~~~p---~-~~~~~v~LiGDAA~~~~P~~g~G~~~Am~dg~~aA~~l~~~~~~---~~~l~~Y~~~~~~~~~ 471 (592)
.. ..+...+ . +..+||+|+|||||.++|..|||+|++|+||..||+.|+..+.. ...|+.|+++|+.. .
T Consensus 320 ~~r~a~~f~~~~~~~~~~r~gRVfLaGDAAH~hsP~~GQGmN~giqDA~nLawkLa~vl~g~a~~~lL~tYe~ERrp~-a 398 (634)
T PRK08294 320 GQRLTDRFDDVPAEEAGTRLPRVFIAGDACHTHSAKAGQGMNVSMQDGFNLGWKLAAVLSGRSPPELLHTYSAERQAI-A 398 (634)
T ss_pred cceehhhcccccccccccccCCEEEEecCccCCCCccccchhhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-H
Confidence 00 0010001 1 23589999999999999999999999999999999999887654 46799999999974 7
Q ss_pred HHHHHHHHcchhhhh
Q 007716 472 WQELQRARNYRPAFE 486 (592)
Q Consensus 472 ~~~l~~~r~~~~~~~ 486 (592)
.+.+...+.+..+|.
T Consensus 399 ~~li~~~~~~~~l~~ 413 (634)
T PRK08294 399 QELIDFDREWSTMMA 413 (634)
T ss_pred HHHHHHHHHHHHHhc
Confidence 777777777777774
No 36
>PRK06184 hypothetical protein; Provisional
Probab=99.96 E-value=9.3e-27 Score=255.96 Aligned_cols=337 Identities=17% Similarity=0.141 Sum_probs=191.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcE
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~ 186 (592)
++||+||||||+||++|+.|++. |++|+||||.+.+... ..+..+.++++ +++..+...+...........+
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~------Gi~v~viE~~~~~~~~-~ra~~l~~~~~-e~l~~lGl~~~l~~~~~~~~~~ 74 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARR------GVSFRLIEKAPEPFPG-SRGKGIQPRTQ-EVFDDLGVLDRVVAAGGLYPPM 74 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHC------CCcEEEEeCCCCCCcC-ccceeecHHHH-HHHHHcCcHHHHHhcCccccce
Confidence 58999999999999999999999 9999999998765432 34666778776 4444433211000000000011
Q ss_pred EEeecCCcc---cCC-----CC-CCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCccc
Q 007716 187 WFLTKDRAF---SLP-----SP-FSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIA 257 (592)
Q Consensus 187 ~~~~~~~~~---~~~-----~~-~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~ 257 (592)
.+......+ .+. .. ......+.+++..+.+.|.+.+.+.|++|+++++++++..++++ | .|++.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~-v-~v~~~~---- 148 (502)
T PRK06184 75 RIYRDDGSVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADG-V-TARVAG---- 148 (502)
T ss_pred eEEeCCceEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCc-E-EEEEEe----
Confidence 111110000 000 00 01122467889999999999999999999999999999888755 3 233321
Q ss_pred CCCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeeEEEEEeecCCCCCCCcEEEEeccCCC
Q 007716 258 KDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLD 337 (592)
Q Consensus 258 ~~G~~~~~f~~g~~i~a~~vI~A~G~~s~vr~~l~~~~~l~~~~~~~~~~~~~g~~~~~~i~~~~~~~g~~~~~~~~~~~ 337 (592)
.+ ++.+++||+||+|||++|.+|+++ ++........+...+ +. ...+.. ... ...+.+ ...
T Consensus 149 ~~--------~~~~i~a~~vVgADG~~S~vR~~l----gi~~~g~~~~~~~~~-~~-~~~~~~--~~~-~~~~~~--~~~ 209 (502)
T PRK06184 149 PA--------GEETVRARYLVGADGGRSFVRKAL----GIGFPGETLGIDRML-VA-DVSLTG--LDR-DAWHQW--PDG 209 (502)
T ss_pred CC--------CeEEEEeCEEEECCCCchHHHHhC----CCCcccCcCCCceEE-EE-EEEeec--CCC-cceEEc--cCC
Confidence 00 146899999999999999999876 554311111110111 11 111111 111 112222 111
Q ss_pred CCCcceEEEEEcCCC-eEEEEEEecccCCCCCCCcHHHHHH-hhcCccccccccCCceeeecceeeecCCccccCcccCC
Q 007716 338 QKTYGGSFLYHMNDR-QIALGLVVALNYHNPFLNPYEEFQK-FKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFP 415 (592)
Q Consensus 338 ~~~~g~~~~~~~~~~-~~~vg~~~~~~~~~~~~~~~~~~~~-~~~~p~i~~~l~~~~~~~~~~~~i~~gg~~~~p~~~~~ 415 (592)
. .+...++|..++ ...+.+....+ ...... .+.++. +........ +. -..+.+. ..........++|..+
T Consensus 210 ~--~~~~~~~p~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~l~~~~~~~~-~~-~~~~~~~--~~~~~~~~~a~~~~~g 281 (502)
T PRK06184 210 D--MGMIALCPLPGTDLFQIQAPLPPG-GEPDLS-ADGLTALLAERTGRTD-IR-LHSVTWA--SAFRMNARLADRYRVG 281 (502)
T ss_pred C--CcEEEEEEccCCCeEEEEEEcCCC-ccCCCC-HHHHHHHHHHhcCCCC-cc-eeeeeee--eccccceeEhhhhcCC
Confidence 1 122345676543 33333332221 111122 222222 221100000 00 0011110 0000011123678889
Q ss_pred CEEEEcCCCcccCCCCccchHHHHHHHHHHHHHHhhhccC--CchHHHHHHHHHHhHHHHHHHHHHcchhhh
Q 007716 416 GGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE--DSNMEIYWDTLQKSWVWQELQRARNYRPAF 485 (592)
Q Consensus 416 ~v~LiGDAA~~~~P~~g~G~~~Am~dg~~aA~~l~~~~~~--~~~l~~Y~~~~~~~~~~~~l~~~r~~~~~~ 485 (592)
|++|+|||||.++|+.|||+|+||+||..||+.|...++. ...|+.|+++|+.. ....+..++.....+
T Consensus 282 Rv~L~GDAAH~~~P~~GqG~n~gi~DA~~LawkLa~vl~g~~~~lL~~Ye~eR~p~-~~~~~~~s~~~~~~~ 352 (502)
T PRK06184 282 RVFLAGDAAHVHPPAGGQGLNTSVQDAYNLGWKLAAVLAGAPEALLDTYEEERRPV-AAAVLGLSTELLDAI 352 (502)
T ss_pred cEEEeccccccCCCcccccccchHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999876543 45799999999975 666666555544333
No 37
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=99.96 E-value=6.8e-27 Score=250.40 Aligned_cols=334 Identities=14% Similarity=0.114 Sum_probs=194.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCC-CCC--CCc-ccccCccChHHHHHhhHhhhhcCCCeee-ec
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKG-AEV--GAH-IISGNVFEPRALNELLPQWKQEEAPIRV-PV 181 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~-~~~--g~~-~~~g~~i~~~~l~~ll~~~~~~~~~~~~-~~ 181 (592)
.+||+||||||+|+++|+.|++. |++|+|+|+. +.. +.. ...+..+.++++ +++..+...+..... ..
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~------G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~-~~L~~lGl~~~l~~~~~~ 76 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKES------DLRIAVIEGQLPEEALNELPDVRVSALSRSSE-HILRNLGAWQGIEARRAA 76 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhC------CCEEEEEcCCCCcccccCCCCcceecccHHHH-HHHHhCCchhhhhhhhCC
Confidence 58999999999999999999998 9999999996 221 110 123455777665 444433221111000 01
Q ss_pred cCCcEEEeecC--CcccCCCCC--CCCCcEEEcHHHHHHHHHHHHHHc-CCEEecCceEEEEEEcCCCcEEEEEeccCcc
Q 007716 182 SSDKFWFLTKD--RAFSLPSPF--SNRGNYVISLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGI 256 (592)
Q Consensus 182 ~~~~~~~~~~~--~~~~~~~~~--~~~~~~~v~~~~l~~~L~~~a~~~-Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~ 256 (592)
....+.+.+.. ..+.++... ...-++.+.+..|.+.|.+.+.+. |++++++++|+++..++++ + .|++.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~-~-~v~~~~--- 151 (405)
T PRK08850 77 PYIAMEVWEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESE-A-WLTLDN--- 151 (405)
T ss_pred cccEEEEEeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCe-E-EEEECC---
Confidence 11122222211 111121111 111267889999999999998875 6999999999999877643 3 466654
Q ss_pred cCCCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccc-eeeEEEEEeecCCCCCCCcEEEEeccC
Q 007716 257 AKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTY-ALGIKEVWEIDEGKHNPGEILHTLGWP 335 (592)
Q Consensus 257 ~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~vr~~l~~~~~l~~~~~~~~~~~-~~g~~~~~~i~~~~~~~g~~~~~~~~~ 335 (592)
|.+++||+||+|||.+|.+|+++ ++.. ....+ ..++......+ ....+.....++
T Consensus 152 ------------g~~~~a~lvIgADG~~S~vR~~~----~~~~----~~~~~~~~~~~~~v~~~--~~~~~~~~~~~~-- 207 (405)
T PRK08850 152 ------------GQALTAKLVVGADGANSWLRRQM----DIPL----THWDYGHSALVANVRTV--DPHNSVARQIFT-- 207 (405)
T ss_pred ------------CCEEEeCEEEEeCCCCChhHHHc----CCCe----eEEeeccEEEEEEEEcc--CCCCCEEEEEEc--
Confidence 57899999999999999999976 5442 11111 12222222221 112222222221
Q ss_pred CCCCCcceEEEEEcCC-CeEEEEEEecccCCC--CCCCcHHHHH-HhhcCccccccccCCceeeecceeeecCCccccCc
Q 007716 336 LDQKTYGGSFLYHMND-RQIALGLVVALNYHN--PFLNPYEEFQ-KFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPY 411 (592)
Q Consensus 336 ~~~~~~g~~~~~~~~~-~~~~vg~~~~~~~~~--~~~~~~~~~~-~~~~~p~i~~~l~~~~~~~~~~~~i~~gg~~~~p~ 411 (592)
.. |...++|..+ +..++.+....+... ...+ .+++. .+.. .+...+...+.... ....+. .....++
T Consensus 208 -~~---g~~~~lp~~~~~~~~~~w~~~~~~~~~~~~~~-~~~~~~~l~~--~~~~~~~~~~~~~~-~~~~pl-~~~~~~~ 278 (405)
T PRK08850 208 -PQ---GPLAFLPMSEPNMSSIVWSTEPLRAEALLAMS-DEQFNKALTA--EFDNRLGLCEVVGE-RQAFPL-KMRYARD 278 (405)
T ss_pred -CC---CceEEEECCCCCeEEEEEECCHHHHHHHHcCC-HHHHHHHHHH--HHhhhhCcEEEccc-ccEEec-ceeeccc
Confidence 11 2345678764 445555444321110 0011 11111 1111 00000000000000 001111 1123468
Q ss_pred ccCCCEEEEcCCCcccCCCCccchHHHHHHHHHHHHHHhhhccC------CchHHHHHHHHHHhHHHHHHHHHHcchhhh
Q 007716 412 PVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE------DSNMEIYWDTLQKSWVWQELQRARNYRPAF 485 (592)
Q Consensus 412 ~~~~~v~LiGDAA~~~~P~~g~G~~~Am~dg~~aA~~l~~~~~~------~~~l~~Y~~~~~~~~~~~~l~~~r~~~~~~ 485 (592)
|..+|++|+|||||.++|..|||+|+||+||..||+.|...... ...|+.|++.|+.. ....+..++.+..+|
T Consensus 279 ~~~~rv~LiGDAAH~~~P~~GQG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~-~~~~~~~~~~l~~~~ 357 (405)
T PRK08850 279 FVRERVALVGDAAHTIHPLAGQGVNLGLLDAASLAQEILALWQQGRDIGLKRNLRGYERWRKAE-AAKMIAAMQGFRDLF 357 (405)
T ss_pred cccCcEEEEEhhhhcCCccccccHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhHH-HHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999875421 25799999888865 777777777777776
Q ss_pred h
Q 007716 486 E 486 (592)
Q Consensus 486 ~ 486 (592)
.
T Consensus 358 ~ 358 (405)
T PRK08850 358 S 358 (405)
T ss_pred C
Confidence 4
No 38
>PRK06996 hypothetical protein; Provisional
Probab=99.96 E-value=2.1e-26 Score=245.90 Aligned_cols=333 Identities=18% Similarity=0.174 Sum_probs=193.7
Q ss_pred cccccEEEECCCHHHHHHHHHHHHhhhhcCCC----CcEEEEcCCCCCCCc-ccccCccChHHHHHhhHh---hhhcCCC
Q 007716 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVD----LSVCVVEKGAEVGAH-IISGNVFEPRALNELLPQ---WKQEEAP 176 (592)
Q Consensus 105 ~~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g----~~V~vlEk~~~~g~~-~~~g~~i~~~~l~~ll~~---~~~~~~~ 176 (592)
.+.+||+||||||+|+++|+.|++. | ++|+|+|+.+..... ...+..+.+.++. ++.. |.....+
T Consensus 9 ~~~~dv~IvGgGpaG~~~A~~L~~~------g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~-~L~~lg~~~~~~~~ 81 (398)
T PRK06996 9 APDFDIAIVGAGPVGLALAGWLARR------SATRALSIALIDAREPAASANDPRAIALSHGSRV-LLETLGAWPADATP 81 (398)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcC------CCcCCceEEEecCCCCCcCCCCceEEEecHHHHH-HHHhCCCchhcCCc
Confidence 4679999999999999999999997 6 579999997643211 1235566776653 4433 4432222
Q ss_pred eeeeccCCcEEEeecC--Ccc--cCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEec
Q 007716 177 IRVPVSSDKFWFLTKD--RAF--SLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTN 252 (592)
Q Consensus 177 ~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~ 252 (592)
+. .+.+.... ... ..........+|++++..|.+.|.+.+++.|++++++++++++..++++ | .|++.
T Consensus 82 ~~------~~~~~~~~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~-v-~v~~~ 153 (398)
T PRK06996 82 IE------HIHVSQRGHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADG-V-TLALG 153 (398)
T ss_pred cc------EEEEecCCCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCe-E-EEEEC
Confidence 22 11111110 011 1111111123689999999999999999999999999999999777654 2 35544
Q ss_pred cCcccCCCCcccccccceEEEcCEEEEecCC-CCcchHHHHHHcCCCcccccCcccce-eeEEEEEeecCCCCCCCcEEE
Q 007716 253 DMGIAKDGSKKENFQRGVELRGRITLLAEGC-RGSLSEKLIKNFKLREKSHAQHQTYA-LGIKEVWEIDEGKHNPGEILH 330 (592)
Q Consensus 253 d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~-~s~vr~~l~~~~~l~~~~~~~~~~~~-~g~~~~~~i~~~~~~~g~~~~ 330 (592)
+ .+| +.+++||+||+|||. +|.+|+.+ +... ....++ .++...+.. ....++....
T Consensus 154 ~----~~g--------~~~i~a~lvIgADG~~~s~~r~~~----~~~~----~~~~~~~~~~~~~v~~--~~~~~~~~~~ 211 (398)
T PRK06996 154 T----PQG--------ARTLRARIAVQAEGGLFHDQKADA----GDSA----RRRDYGQTAIVGTVTV--SAPRPGWAWE 211 (398)
T ss_pred C----CCc--------ceEEeeeEEEECCCCCchHHHHHc----CCCc----eeeecCCeEEEEEEEc--cCCCCCEEEE
Confidence 3 111 258999999999997 46667654 4432 111221 122222222 1122222221
Q ss_pred EeccCCCCCCcceEEEEEcCCCe---EEEEEEecccCCC--CCCCcHHHHHHhhcCccccccccCCceeeecce-eeecC
Q 007716 331 TLGWPLDQKTYGGSFLYHMNDRQ---IALGLVVALNYHN--PFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGAR-TLNEG 404 (592)
Q Consensus 331 ~~~~~~~~~~~g~~~~~~~~~~~---~~vg~~~~~~~~~--~~~~~~~~~~~~~~~p~i~~~l~~~~~~~~~~~-~i~~g 404 (592)
.+. .. |...++|..++. ..+.+....+... ...+..+..+.+.. .+...+. ........ .++..
T Consensus 212 ~~~---~~---G~~~~lp~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~--~~~~~~~~~~~~l~ 281 (398)
T PRK06996 212 RFT---HE---GPLALLPLGGPRQADYALVWCCAPDEAARRAALPDDAFLAELGA--AFGTRMG--RFTRIAGRHAFPLG 281 (398)
T ss_pred Eec---CC---CCeEEeECCCCCCCcEEEEEECCHHHHHHHHcCCHHHHHHHHHH--HhccccC--ceEEecceEEEeee
Confidence 121 11 224456765543 3443333221100 01111111111111 0111111 11100001 11211
Q ss_pred CccccCcccCCCEEEEcCCCcccCCCCccchHHHHHHHHHHHHHHhhhccCCchHHHHHHHHHHhHHHHHHHHHHcchhh
Q 007716 405 GLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHEDSNMEIYWDTLQKSWVWQELQRARNYRPA 484 (592)
Q Consensus 405 g~~~~p~~~~~~v~LiGDAA~~~~P~~g~G~~~Am~dg~~aA~~l~~~~~~~~~l~~Y~~~~~~~~~~~~l~~~r~~~~~ 484 (592)
....++|..+|++|||||||.++|+.|||+|+||+||..||++|.........|+.|++.|+.. ....+..++.+..+
T Consensus 282 -~~~~~~~~~grv~LiGDAAH~~~P~~GQG~n~ai~Da~~La~~L~~~~~~~~~L~~Y~~~R~~~-~~~~~~~s~~l~~~ 359 (398)
T PRK06996 282 -LNAARTLVNGRIAAVGNAAQTLHPVAGQGLNLGLRDAHTLADALSDHGATPLALATFAARRALD-RRVTIGATDLLPRL 359 (398)
T ss_pred -cccccceecCCEEEEEhhhccCCcccchhHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 2344678899999999999999999999999999999999999976432346799999999865 77777888877777
Q ss_pred hh
Q 007716 485 FE 486 (592)
Q Consensus 485 ~~ 486 (592)
|.
T Consensus 360 ~~ 361 (398)
T PRK06996 360 FT 361 (398)
T ss_pred Hc
Confidence 75
No 39
>PLN02985 squalene monooxygenase
Probab=99.96 E-value=3.8e-26 Score=249.58 Aligned_cols=340 Identities=15% Similarity=0.217 Sum_probs=197.9
Q ss_pred ccccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeee-ecc
Q 007716 104 ESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRV-PVS 182 (592)
Q Consensus 104 ~~~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~-~~~ 182 (592)
....+||+|||||++|+++|+.|++. |++|+|+||...... ...|..+.+.++. .+..++..+..... ...
T Consensus 40 ~~~~~DViIVGAG~aGlalA~aLa~~------G~~V~vlEr~~~~~~-~~~g~~L~p~g~~-~L~~LGl~d~l~~~~~~~ 111 (514)
T PLN02985 40 KDGATDVIIVGAGVGGSALAYALAKD------GRRVHVIERDLREPE-RMMGEFMQPGGRF-MLSKLGLEDCLEGIDAQK 111 (514)
T ss_pred cCCCceEEEECCCHHHHHHHHHHHHc------CCeEEEEECcCCCCc-cccccccCchHHH-HHHHcCCcchhhhccCcc
Confidence 45679999999999999999999998 999999999764322 2346677776652 33333221111000 011
Q ss_pred CCcEEEeecCCc--ccCCCCCC----CCCcEEEcHHHHHHHHHHHHHHc-CCEEecCceEEEEEEcCCCcEEEEEeccCc
Q 007716 183 SDKFWFLTKDRA--FSLPSPFS----NRGNYVISLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMG 255 (592)
Q Consensus 183 ~~~~~~~~~~~~--~~~~~~~~----~~~~~~v~~~~l~~~L~~~a~~~-Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g 255 (592)
...+.+...+.. ..++.... ...++.+++.+|.+.|.+++.+. ||+++.+ .++++..++ +.+.+|++.+
T Consensus 112 ~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~g-tvv~li~~~-~~v~gV~~~~-- 187 (514)
T PLN02985 112 ATGMAVYKDGKEAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEEG-TVKSLIEEK-GVIKGVTYKN-- 187 (514)
T ss_pred cccEEEEECCEEEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEee-eEEEEEEcC-CEEEEEEEEc--
Confidence 122222222221 22221110 12247889999999999999876 6999876 577776654 5666777643
Q ss_pred ccCCCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeeEEEEEeecCC-CCCCCcEEEEecc
Q 007716 256 IAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEG-KHNPGEILHTLGW 334 (592)
Q Consensus 256 ~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~vr~~l~~~~~l~~~~~~~~~~~~~g~~~~~~i~~~-~~~~g~~~~~~~~ 334 (592)
++|+. .+++||+||+|||++|.+|+++. ... .....+..++. +... ...++....+++
T Consensus 188 --~dG~~-------~~~~AdLVVgADG~~S~vR~~l~----~~~---~~~~s~~~~~~----~~~~~~~~~~~~~~~~~- 246 (514)
T PLN02985 188 --SAGEE-------TTALAPLTVVCDGCYSNLRRSLN----DNN---AEVLSYQVGYI----SKNCRLEEPEKLHLIMS- 246 (514)
T ss_pred --CCCCE-------EEEECCEEEECCCCchHHHHHhc----cCC---CcceeEeEEEE----EccccCCCCCcceEEcC-
Confidence 33432 46789999999999999999872 221 01122222221 1111 112222211222
Q ss_pred CCCCCCcceEEEEEcCCCeEEEEEEecccCCCCCCCcHHHHHHh-hc--Ccc----ccccccCC-ceeeecceeeecCCc
Q 007716 335 PLDQKTYGGSFLYHMNDRQIALGLVVALNYHNPFLNPYEEFQKF-KH--HPA----IKPLLEGG-TVVQYGARTLNEGGL 406 (592)
Q Consensus 335 ~~~~~~~g~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~~~~~~~-~~--~p~----i~~~l~~~-~~~~~~~~~i~~gg~ 406 (592)
.. +...+||.+++.+.+.+....+. .+.... .++..| +. .|. +++.+..+ +... ..+..+.. .
T Consensus 247 ---~~--~~~l~ypi~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~p~~p~~l~~~f~~~~~~~~-~~~~~p~~-~ 317 (514)
T PLN02985 247 ---KP--SFTMLYQISSTDVRCVFEVLPDN-IPSIAN-GEMSTFVKNTIAPQVPPKLRKIFLKGIDEGA-HIKVVPTK-R 317 (514)
T ss_pred ---CC--ceEEEEEeCCCeEEEEEEEeCCC-CCCcCh-hhHHHHHHhccccccCHHHHHHHHhhccccc-ceeecCcc-c
Confidence 11 34578888777766554443321 111221 122222 11 122 22222110 0000 00111111 1
Q ss_pred cccCcccCCCEEEEcCCCcccCCCCccchHHHHHHHHHHHHHHhhhc--cC----CchHHHHHHHHHHhHHHHHHHHHHc
Q 007716 407 QSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVL--HE----DSNMEIYWDTLQKSWVWQELQRARN 480 (592)
Q Consensus 407 ~~~p~~~~~~v~LiGDAA~~~~P~~g~G~~~Am~dg~~aA~~l~~~~--~~----~~~l~~Y~~~~~~~~~~~~l~~~r~ 480 (592)
.+...+..+|++|||||||+++|+.|||+++|++|+.+|++.|...- .+ ..+|+.|+..|+.+ .......++.
T Consensus 318 l~~~~~~~~~vvLiGDAaH~~~P~~GQGmn~AleDA~vLa~lL~~~~~~~~~~~~~~aL~~y~~~Rk~r-~~~i~~la~a 396 (514)
T PLN02985 318 MSATLSDKKGVIVLGDAFNMRHPAIASGMMVLLSDILILRRLLQPLSNLGNANKVSEVIKSFYDIRKPM-SATVNTLGNA 396 (514)
T ss_pred ccccccCCCCEEEEecccccCCCCccccHhHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHhhcc-hhHHHHHHHH
Confidence 12234455799999999999999999999999999999999997532 11 35799999999865 6677777777
Q ss_pred chhhhh
Q 007716 481 YRPAFE 486 (592)
Q Consensus 481 ~~~~~~ 486 (592)
+.++|.
T Consensus 397 l~~~f~ 402 (514)
T PLN02985 397 FSQVLV 402 (514)
T ss_pred HHHHHH
Confidence 777773
No 40
>PRK06475 salicylate hydroxylase; Provisional
Probab=99.96 E-value=1.5e-26 Score=247.25 Aligned_cols=329 Identities=14% Similarity=0.139 Sum_probs=186.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcEE
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~~ 187 (592)
-+|+||||||+||++|+.|++. |++|+|+||.+.... ...|..+.+.++. ++..+..........+....+.
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~------G~~V~i~E~~~~~~~-~g~gi~l~~~~~~-~L~~~Gl~~~l~~~~~~~~~~~ 74 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAAR------GWAVTIIEKAQELSE-VGAGLQLAPNAMR-HLERLGVADRLSGTGVTPKALY 74 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhC------CCcEEEEecCCccCc-CCccceeChhHHH-HHHHCCChHHHhhcccCcceEE
Confidence 5799999999999999999998 999999999876542 2345566777653 3333322111101111112222
Q ss_pred EeecCCc---cc--C---CCCCCCCCcEEEcHHHHHHHHHHHHHHc-CCEEecCceEEEEEEcCCCcEEEEEeccCcccC
Q 007716 188 FLTKDRA---FS--L---PSPFSNRGNYVISLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGIAK 258 (592)
Q Consensus 188 ~~~~~~~---~~--~---~~~~~~~~~~~v~~~~l~~~L~~~a~~~-Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~ 258 (592)
+.+.... .. . .........+.++|..|.+.|.+.+.+. |++++++++|+++..++++ + .|++.+ .
T Consensus 75 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~-v-~v~~~~----~ 148 (400)
T PRK06475 75 LMDGRKARPLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNS-I-TATIIR----T 148 (400)
T ss_pred EecCCCcceEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCc-e-EEEEEe----C
Confidence 2221100 00 0 0000112234689999999999998764 7999999999999876643 3 344422 0
Q ss_pred CCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccce-eeEEEEEeecC--CC-----CCCCcEEE
Q 007716 259 DGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYA-LGIKEVWEIDE--GK-----HNPGEILH 330 (592)
Q Consensus 259 ~G~~~~~f~~g~~i~a~~vI~A~G~~s~vr~~l~~~~~l~~~~~~~~~~~~-~g~~~~~~i~~--~~-----~~~g~~~~ 330 (592)
+ ++.+++||+||+|||.+|.+|+++ +... +...+ ..+........ .. ...+....
T Consensus 149 ~--------~~~~~~adlvIgADG~~S~vR~~~----~~~~-----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (400)
T PRK06475 149 N--------SVETVSAAYLIACDGVWSMLRAKA----GFSK-----ARFSGHIAWRTTLAADALPASFLSAMPEHKAVSA 211 (400)
T ss_pred C--------CCcEEecCEEEECCCccHhHHhhc----CCCC-----CCcCCceEEEEEeehhhcchhhhhhcccCCceEE
Confidence 1 135799999999999999999976 2221 11111 12222221111 00 01121222
Q ss_pred EeccCCCCCCcceEEEEEcCCCeEEEEEEecc--cCCCCCC--CcHHHHH-Hhhc-CccccccccCCceeeecceeeecC
Q 007716 331 TLGWPLDQKTYGGSFLYHMNDRQIALGLVVAL--NYHNPFL--NPYEEFQ-KFKH-HPAIKPLLEGGTVVQYGARTLNEG 404 (592)
Q Consensus 331 ~~~~~~~~~~~g~~~~~~~~~~~~~vg~~~~~--~~~~~~~--~~~~~~~-~~~~-~p~i~~~l~~~~~~~~~~~~i~~g 404 (592)
+++ ++ +....||..++.....+.... .....+. ...+.+. .+.. .|.+..+++...... ..+..
T Consensus 212 ~~g----~~--~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~----~~~l~ 281 (400)
T PRK06475 212 WLG----NK--AHFIAYPVKGGKFFNFVAITGGENPGEVWSKTGDKAHLKSIYADWNKPVLQILAAIDEWT----YWPLF 281 (400)
T ss_pred EEc----CC--CEEEEEEccCCcEEEEEEEEcCCCCcccCCCCCCHHHHHHHhcCCChHHHHHHhcCCcee----ECcCc
Confidence 221 11 335677876654322222111 1011111 1122222 2322 344455554322111 11111
Q ss_pred CccccCcccCCCEEEEcCCCcccCCCCccchHHHHHHHHHHHHHHhhhccCCchHHHHHHHHHHhHHHHHHHHHH
Q 007716 405 GLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHEDSNMEIYWDTLQKSWVWQELQRAR 479 (592)
Q Consensus 405 g~~~~p~~~~~~v~LiGDAA~~~~P~~g~G~~~Am~dg~~aA~~l~~~~~~~~~l~~Y~~~~~~~~~~~~l~~~r 479 (592)
.....+.|..+|++|||||||.++|..|||+|+||+||..||++|... .-..+|+.|++.|+.+ +...+..++
T Consensus 282 ~~~~~~~~~~grvvLiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~~-~~~~aL~~Ye~~R~~r-~~~~~~~s~ 354 (400)
T PRK06475 282 EMADAQFVGPDRTIFLGDASHAVTPFAAQGAAMAIEDAAALAEALDSD-DQSAGLKRFDSVRKER-IAAVAKRGQ 354 (400)
T ss_pred ccCCCcceecCCEEEEecccccCCchhhhhHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 112223345689999999999999999999999999999999999632 1136899999999875 666666665
No 41
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.96 E-value=9.7e-27 Score=247.85 Aligned_cols=336 Identities=16% Similarity=0.139 Sum_probs=200.2
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCc----ccccCccChHHHHHhhHhhhhcCCCeeee-
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAH----IISGNVFEPRALNELLPQWKQEEAPIRVP- 180 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~----~~~g~~i~~~~l~~ll~~~~~~~~~~~~~- 180 (592)
|.+||+||||||+||++|+.|++. |++|+|+||.+..... ...+..+.+.++ +++..+..........
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~~------G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~-~~l~~~g~~~~~~~~~~ 76 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQS------GLRVALLAPRAPPRPADDAWDSRVYAISPSSQ-AFLERLGVWQALDAARL 76 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHhC------CCeEEEEecCCCccccCCCCCCceEeecHHHH-HHHHHcCchhhhhhhcC
Confidence 578999999999999999999998 9999999998765321 011234566655 3443332211100000
Q ss_pred ccCCcEEEeec-CCcccCCCC--CCCCCcEEEcHHHHHHHHHHHHHHcC-CEEecCceEEEEEEcCCCcEEEEEeccCcc
Q 007716 181 VSSDKFWFLTK-DRAFSLPSP--FSNRGNYVISLSQLVRWLGGKAEELG-VEIYPGFAASEILYDADNKVIGIGTNDMGI 256 (592)
Q Consensus 181 ~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~v~~~~l~~~L~~~a~~~G-v~i~~g~~v~~i~~~~~g~v~~V~~~d~g~ 256 (592)
.....+.+... ...+.+... ......+.+++..+.+.|.+.+++.| ++++ ++.|+++..++++ + .|++.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~-~-~v~~~~--- 150 (388)
T PRK07608 77 APVYDMRVFGDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPDA-A-TLTLAD--- 150 (388)
T ss_pred CcceEEEEEECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCCe-E-EEEECC---
Confidence 01112222221 111221111 11122578899999999999999887 9999 9999998876643 3 466654
Q ss_pred cCCCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeeEEEEEeecCCCCCCCcEEEEeccCC
Q 007716 257 AKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPL 336 (592)
Q Consensus 257 ~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~vr~~l~~~~~l~~~~~~~~~~~~~g~~~~~~i~~~~~~~g~~~~~~~~~~ 336 (592)
|.+++||+||+|||.+|.+|+.+ ++.. .. ......++....+.+. ...+...++++
T Consensus 151 ------------g~~~~a~~vI~adG~~S~vr~~~----~~~~--~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~--- 206 (388)
T PRK07608 151 ------------GQVLRADLVVGADGAHSWVRSQA----GIKA--ER-RPYRQTGVVANFKAER--PHRGTAYQWFR--- 206 (388)
T ss_pred ------------CCEEEeeEEEEeCCCCchHHHhc----CCCc--cc-cccCCEEEEEEEEecC--CCCCEEEEEec---
Confidence 56899999999999999988765 4442 11 1111233332223222 11222233321
Q ss_pred CCCCcceEEEEEcCCCeEEEEEEecccCCCC--CCCcHHHHHHhhcCccccccccCCceeeecceeeecCCccccCcccC
Q 007716 337 DQKTYGGSFLYHMNDRQIALGLVVALNYHNP--FLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVF 414 (592)
Q Consensus 337 ~~~~~g~~~~~~~~~~~~~vg~~~~~~~~~~--~~~~~~~~~~~~~~p~i~~~l~~~~~~~~~~~~i~~gg~~~~p~~~~ 414 (592)
.+ +..+++|.+++.+.+.+....+.... ..++.+..+.++.. +...+.....+.. ...++. ....++.|..
T Consensus 207 -~~--~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~ 279 (388)
T PRK07608 207 -DD--GILALLPLPDGHVSMVWSARTAHADELLALSPEALAARVERA--SGGRLGRLECVTP-AAGFPL-RLQRVDRLVA 279 (388)
T ss_pred -CC--CCEEEeECCCCCeEEEEECCHHHHHHHHCCCHHHHHHHHHHH--HHHhcCCceecCC-cceeec-chhhhhhhhc
Confidence 22 34678899888777665543211100 01221211222210 0001110011100 001111 1123568888
Q ss_pred CCEEEEcCCCcccCCCCccchHHHHHHHHHHHHHHhhhcc-----CCchHHHHHHHHHHhHHHHHHHHHHcchhhhh
Q 007716 415 PGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLH-----EDSNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (592)
Q Consensus 415 ~~v~LiGDAA~~~~P~~g~G~~~Am~dg~~aA~~l~~~~~-----~~~~l~~Y~~~~~~~~~~~~l~~~r~~~~~~~ 486 (592)
+|++|||||||.++|+.|||+|+||+||..||++|..... ...+|+.|++.|+.. +...++.++.+..+|.
T Consensus 280 ~rv~liGDAAh~~~P~~GqG~n~ai~da~~La~~L~~~~~~~~~~~~~~l~~Ye~~R~~~-~~~~~~~~~~~~~~~~ 355 (388)
T PRK07608 280 PRVALVGDAAHLIHPLAGQGMNLGLRDVAALADVLAGREPFRDLGDLRLLRRYERARRED-ILALQVATDGLQRLFA 355 (388)
T ss_pred CceEEEeccccccCCccccccchhHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999986531 125799999999865 7777777777777774
No 42
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.96 E-value=6.6e-27 Score=249.14 Aligned_cols=332 Identities=15% Similarity=0.124 Sum_probs=192.6
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCc
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDK 185 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~ 185 (592)
..+||+||||||+|+++|+.|++. |++|+||||.+..+. ..+..+.+.++ +++..+...............
T Consensus 6 ~~~dViIVGaG~~Gl~~A~~L~~~------G~~v~liE~~~~~~~--~r~~~l~~~s~-~~l~~lgl~~~~~~~~~~~~~ 76 (388)
T PRK07494 6 EHTDIAVIGGGPAGLAAAIALARA------GASVALVAPEPPYAD--LRTTALLGPSI-RFLERLGLWARLAPHAAPLQS 76 (388)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcC------CCeEEEEeCCCCCCC--cchhhCcHHHH-HHHHHhCchhhhHhhcceeeE
Confidence 458999999999999999999998 999999999875432 12334555443 333332211000000011112
Q ss_pred EEEeecCCcc------cCCC--CCCCCCcEEEcHHHHHHHHHHHHHHcC-CEEecCceEEEEEEcCCCcEEEEEeccCcc
Q 007716 186 FWFLTKDRAF------SLPS--PFSNRGNYVISLSQLVRWLGGKAEELG-VEIYPGFAASEILYDADNKVIGIGTNDMGI 256 (592)
Q Consensus 186 ~~~~~~~~~~------~~~~--~~~~~~~~~v~~~~l~~~L~~~a~~~G-v~i~~g~~v~~i~~~~~g~v~~V~~~d~g~ 256 (592)
+.+.+..... .+.. ......+|.+++..+.+.|.+.+.+.+ +. +++++|+++..++++ + .|++.+
T Consensus 77 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~-~-~v~~~~--- 150 (388)
T PRK07494 77 MRIVDATGRLIRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNIT-RFGDEAESVRPREDE-V-TVTLAD--- 150 (388)
T ss_pred EEEEeCCCCCCCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcE-EECCeeEEEEEcCCe-E-EEEECC---
Confidence 2222221111 1110 011223688999999999999998875 55 789999999877644 3 366554
Q ss_pred cCCCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeeEEEEEeecCCCCCCCcEEEEeccCC
Q 007716 257 AKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPL 336 (592)
Q Consensus 257 ~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~vr~~l~~~~~l~~~~~~~~~~~~~g~~~~~~i~~~~~~~g~~~~~~~~~~ 336 (592)
|.+++||+||+|||.+|.+|+++ ++.. ........ ++. ..+.......+.....+.
T Consensus 151 ------------g~~~~a~~vI~AdG~~S~vr~~~----g~~~-~~~~~~~~--~~~--~~v~~~~~~~~~~~~~~~--- 206 (388)
T PRK07494 151 ------------GTTLSARLVVGADGRNSPVREAA----GIGV-RTWSYPQK--ALV--LNFTHSRPHQNVSTEFHT--- 206 (388)
T ss_pred ------------CCEEEEeEEEEecCCCchhHHhc----CCCc-eecCCCCE--EEE--EEEeccCCCCCEEEEEeC---
Confidence 56899999999999999998865 5442 11111111 121 122211111221111211
Q ss_pred CCCCcceEEEEEcCCCeEEEEEEecccCCC--CCCCcHHHHH-HhhcCccccccccCCceeeecceeeecCCccccCccc
Q 007716 337 DQKTYGGSFLYHMNDRQIALGLVVALNYHN--PFLNPYEEFQ-KFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPV 413 (592)
Q Consensus 337 ~~~~~g~~~~~~~~~~~~~vg~~~~~~~~~--~~~~~~~~~~-~~~~~p~i~~~l~~~~~~~~~~~~i~~gg~~~~p~~~ 413 (592)
.. |..+++|.+++..++.+....+... ...++ ++++ .+.. .+.+.+...+.... ....+... ...++|.
T Consensus 207 ~~---g~~~~~Pl~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~l~~~~~~~~-~~~~~l~~-~~~~~~~ 278 (388)
T PRK07494 207 EG---GPFTQVPLPGRRSSLVWVVRPAEAERLLALSD-AALSAAIEE--RMQSMLGKLTLEPG-RQAWPLSG-QVAHRFA 278 (388)
T ss_pred CC---CcEEEEECCCCcEEEEEECCHHHHHHHHcCCH-HHHHHHHHH--HHhhhcCCeEEccC-CcEeechH-HHHHhhc
Confidence 11 3467788877766655443322100 01121 2222 2211 12222221111100 01111111 1225788
Q ss_pred CCCEEEEcCCCcccCCCCccchHHHHHHHHHHHHHHhhhccC---CchHHHHHHHHHHhHHHHHHHHHHcchhhh
Q 007716 414 FPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE---DSNMEIYWDTLQKSWVWQELQRARNYRPAF 485 (592)
Q Consensus 414 ~~~v~LiGDAA~~~~P~~g~G~~~Am~dg~~aA~~l~~~~~~---~~~l~~Y~~~~~~~~~~~~l~~~r~~~~~~ 485 (592)
.+|++|+|||||.++|+.|||+|+||+||..||+.|...... ...|+.|++.|+.. +...+.....+...|
T Consensus 279 ~~rv~LiGDAAH~~~P~~GqG~n~~l~Da~~La~~L~~~~~~~~~~~~L~~Y~~~R~~~-~~~~~~~~~~~~~~~ 352 (388)
T PRK07494 279 AGRTALVGEAAHVFPPIGAQGLNLGLRDVATLVEIVEDRPEDPGSAAVLAAYDRARRPD-ILSRTASVDLLNRSL 352 (388)
T ss_pred cCceEEEEhhhhcCCchhhcccchhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999875433 36899999999865 555555555555555
No 43
>PRK07190 hypothetical protein; Provisional
Probab=99.96 E-value=1.7e-26 Score=251.47 Aligned_cols=329 Identities=16% Similarity=0.136 Sum_probs=190.9
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhh------hcCCCeee
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWK------QEEAPIRV 179 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~------~~~~~~~~ 179 (592)
..+||+||||||+||++|+.|++. |++|+||||.+.+.. ...+..+.++++ +++..+. ....+...
T Consensus 4 ~~~dVlIVGAGPaGL~lA~~Lar~------Gi~V~llEr~~~~~~-~gra~~l~~~tl-e~L~~lGl~~~l~~~~~~~~~ 75 (487)
T PRK07190 4 QVTDVVIIGAGPVGLMCAYLGQLC------GLNTVIVDKSDGPLE-VGRADALNARTL-QLLELVDLFDELYPLGKPCNT 75 (487)
T ss_pred ccceEEEECCCHHHHHHHHHHHHc------CCCEEEEeCCCcccc-cccceEeCHHHH-HHHHhcChHHHHHhhCcccee
Confidence 358999999999999999999999 999999999986543 223445777765 3333221 11222111
Q ss_pred e-ccCCcEEEeecCCc-c-cCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcc
Q 007716 180 P-VSSDKFWFLTKDRA-F-SLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGI 256 (592)
Q Consensus 180 ~-~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~ 256 (592)
. +.... .++..... + ..+. ......+.+.+..+.+.|.+.+++.|++|+++++|+++..++++ + .|.+.+
T Consensus 76 ~~~~~~g-~~i~~~~~~~~~~~~-~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~-v-~v~~~~--- 148 (487)
T PRK07190 76 SSVWANG-KFISRQSSWWEELEG-CLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAG-C-LTTLSN--- 148 (487)
T ss_pred EEEecCC-ceEeeccccCccCCc-CCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCe-e-EEEECC---
Confidence 1 00000 00100000 0 0000 01112356788999999999999999999999999999988755 3 244433
Q ss_pred cCCCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeeEEEEEeecCCCCCCCcEEEEeccCC
Q 007716 257 AKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPL 336 (592)
Q Consensus 257 ~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~vr~~l~~~~~l~~~~~~~~~~~~~g~~~~~~i~~~~~~~g~~~~~~~~~~ 336 (592)
|.+++||+||+|||++|.+|+++ ++.. ....++..+.-+....+..... .+.. .. +. .
T Consensus 149 ------------g~~v~a~~vVgADG~~S~vR~~l----gi~f-~g~~~~~~~~~~d~~~~~~~~~-~~~~-~~-~~--~ 206 (487)
T PRK07190 149 ------------GERIQSRYVIGADGSRSFVRNHF----NVPF-EIIRPQIIWAVIDGVIDTDFPK-VPEI-IV-FQ--A 206 (487)
T ss_pred ------------CcEEEeCEEEECCCCCHHHHHHc----CCCc-cccccceeEEEEEEEEccCCCC-Ccce-EE-EE--c
Confidence 46899999999999999999975 6653 1112222111111111111010 1111 11 11 1
Q ss_pred CCCCcceEEEEEcCCCeEEEEEEecccCCCCCCCcHHHHHHhhc--CccccccccCCceeeecceeeecCCccccCccc-
Q 007716 337 DQKTYGGSFLYHMNDRQIALGLVVALNYHNPFLNPYEEFQKFKH--HPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPV- 413 (592)
Q Consensus 337 ~~~~~g~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~~~~~~~~~--~p~i~~~l~~~~~~~~~~~~i~~gg~~~~p~~~- 413 (592)
. .|..+++|.+++...+-+. .+ .......+..+.+.. .|.- +. -..+.+. ..++.. .....++.
T Consensus 207 ~---~g~~~~~p~~~~~~r~~~~--~~--~~~~t~~~~~~~l~~~~~~~~---~~-~~~~~w~-s~~~~~-~r~a~~~r~ 273 (487)
T PRK07190 207 E---TSDVAWIPREGEIDRFYVR--MD--TKDFTLEQAIAKINHAMQPHR---LG-FKEIVWF-SQFSVK-ESVAEHFFI 273 (487)
T ss_pred C---CCCEEEEECCCCEEEEEEE--cC--CCCCCHHHHHHHHHHhcCCCC---Cc-eEEEEEE-EEeeeC-cEehhhcCc
Confidence 1 2445677877654433221 11 112222222222221 1110 11 0111111 011111 12334664
Q ss_pred CCCEEEEcCCCcccCCCCccchHHHHHHHHHHHHHHhhhccC---CchHHHHHHHHHHhHHHHHHHHHHcchhhh
Q 007716 414 FPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE---DSNMEIYWDTLQKSWVWQELQRARNYRPAF 485 (592)
Q Consensus 414 ~~~v~LiGDAA~~~~P~~g~G~~~Am~dg~~aA~~l~~~~~~---~~~l~~Y~~~~~~~~~~~~l~~~r~~~~~~ 485 (592)
.+||+|+|||||.++|..|||+|++|+||..|++.|+..++. ...|+.|+++|+.. ..+.+...+.+..++
T Consensus 274 ~gRV~LaGDAAH~h~P~gGQGmN~giqDA~nL~wkLa~v~~g~a~~~lLdtY~~eR~p~-a~~vl~~t~~~~~~~ 347 (487)
T PRK07190 274 QDRIFLAGDACHIHSVNGGQGLNTGLADAFNLIWKLNMVIHHGASPELLQSYEAERKPV-AQGVIETSGELVRST 347 (487)
T ss_pred CCcEEEEecccccCCCccccchhhhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HHHHHHHHHHHHhhc
Confidence 689999999999999999999999999999999999876654 46799999999864 666666666544443
No 44
>PRK06834 hypothetical protein; Provisional
Probab=99.96 E-value=3e-26 Score=249.77 Aligned_cols=320 Identities=17% Similarity=0.139 Sum_probs=186.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhh------hhcCCCeeee
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQW------KQEEAPIRVP 180 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~------~~~~~~~~~~ 180 (592)
++||+||||||+|+++|+.|++. |++|+||||.+........+..+.++++ +++..+ ........
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~------G~~v~vlEr~~~~~~~~~Ra~~l~~~s~-~~L~~lGl~~~l~~~~~~~~-- 73 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALA------GVDVAIVERRPNQELVGSRAGGLHARTL-EVLDQRGIADRFLAQGQVAQ-- 73 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHC------CCcEEEEecCCCCCCCCcceeeECHHHH-HHHHHcCcHHHHHhcCCccc--
Confidence 58999999999999999999999 9999999998753211123456777766 333222 11111110
Q ss_pred ccCCcEEEeecCCcccCCC-CCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCC
Q 007716 181 VSSDKFWFLTKDRAFSLPS-PFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKD 259 (592)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~ 259 (592)
...+... .+++.. .......+.+.+..+.+.|.+.+++.|++|+++++++++..++++ + .|++.+
T Consensus 74 --~~~~~~~----~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~-v-~v~~~~------ 139 (488)
T PRK06834 74 --VTGFAAT----RLDISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTG-V-DVELSD------ 139 (488)
T ss_pred --cceeeeE----ecccccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCe-E-EEEECC------
Confidence 0111110 011110 011123466888999999999999999999999999999987754 3 355543
Q ss_pred CCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeeEEEEEeecCCCCCCCcEEEEeccCCCCC
Q 007716 260 GSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQK 339 (592)
Q Consensus 260 G~~~~~f~~g~~i~a~~vI~A~G~~s~vr~~l~~~~~l~~~~~~~~~~~~~g~~~~~~i~~~~~~~g~~~~~~~~~~~~~ 339 (592)
|.+++||+||+|||.+|.+|+++ ++.. .........+ +.. ..+... +....+ ..
T Consensus 140 ---------g~~i~a~~vVgADG~~S~vR~~l----gi~~-~g~~~~~~~~-~~d-v~~~~~---~~~~~~-------~~ 193 (488)
T PRK06834 140 ---------GRTLRAQYLVGCDGGRSLVRKAA----GIDF-PGWDPTTSYL-IAE-VEMTEE---PEWGVH-------RD 193 (488)
T ss_pred ---------CCEEEeCEEEEecCCCCCcHhhc----CCCC-CCCCcceEEE-EEE-EEecCC---CCccee-------eC
Confidence 46899999999999999999865 5553 1111111111 111 122111 100000 01
Q ss_pred CcceEEEEEcC-CCeEEEEEEecccCCCCCCCcHHHHHH-hhcCccccccccCCceeeecceeeecCCccccCcccCCCE
Q 007716 340 TYGGSFLYHMN-DRQIALGLVVALNYHNPFLNPYEEFQK-FKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGG 417 (592)
Q Consensus 340 ~~g~~~~~~~~-~~~~~vg~~~~~~~~~~~~~~~~~~~~-~~~~p~i~~~l~~~~~~~~~~~~i~~gg~~~~p~~~~~~v 417 (592)
..|...+.+.. ++...+.+........... ..+++.. +.. .. ...+..... .+. ..++. .....++|..+|+
T Consensus 194 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~-~~-g~~~~~~~~-~~~-~~~~~-~~r~a~~~~~gRV 267 (488)
T PRK06834 194 ALGIHAFGRLEDEGPVRVMVTEKQVGATGEP-TLDDLREALIA-VY-GTDYGIHSP-TWI-SRFTD-MARQAASYRDGRV 267 (488)
T ss_pred CCceEEEeccCCCCeEEEEEecCCCCCCCCC-CHHHHHHHHHH-hh-CCCCccccc-eeE-Eeccc-cceecccccCCcE
Confidence 11222334443 4555544332211111111 2233322 221 00 000000011 110 00111 1124568888999
Q ss_pred EEEcCCCcccCCCCccchHHHHHHHHHHHHHHhhhccC---CchHHHHHHHHHHhHHHHHHHHHHcch
Q 007716 418 AIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE---DSNMEIYWDTLQKSWVWQELQRARNYR 482 (592)
Q Consensus 418 ~LiGDAA~~~~P~~g~G~~~Am~dg~~aA~~l~~~~~~---~~~l~~Y~~~~~~~~~~~~l~~~r~~~ 482 (592)
+|+|||||.++|+.|||+|++|+||..||+.|...+.. ...|+.|+++|+.. ..+.+.......
T Consensus 268 ~LaGDAAH~~~P~gGQG~N~gi~DA~nLawkLa~vl~g~~~~~lLd~Ye~eRrp~-~~~~~~~t~~~~ 334 (488)
T PRK06834 268 LLAGDAAHVHSPVGGQGLNTGVQDAVNLGWKLAQVVKGTSPESLLDTYHAERHPV-AARVLRNTMAQV 334 (488)
T ss_pred EEEeeccccCCccccccccccHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 99999999999999999999999999999999887654 46899999999864 555555444433
No 45
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.95 E-value=2e-26 Score=244.91 Aligned_cols=334 Identities=13% Similarity=0.117 Sum_probs=190.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCC--CC--c-ccccCccChHHHHHhhHhhhhcCCCeee-e
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEV--GA--H-IISGNVFEPRALNELLPQWKQEEAPIRV-P 180 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~--g~--~-~~~g~~i~~~~l~~ll~~~~~~~~~~~~-~ 180 (592)
.+||+||||||+|+++|+.|++. |++|+|||+.+.. .. . ......+.+.++ +++..+...+..... .
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~------G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~-~~L~~lG~~~~~~~~~~ 75 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQ------GRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSV-DLLESLGAWSSIVAMRV 75 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhC------CCcEEEEcCCCcccCCCCCCCCccEEEecHHHH-HHHHHCCCchhhhHhhC
Confidence 48999999999999999999999 9999999987521 10 0 011125667665 333333321110000 0
Q ss_pred ccCCcEEEeec-CCcccCCCC-C-CCCCcEEEcHHHHHHHHHHHHHHc-CCEEecCceEEEEEEcCCCcEEEEEeccCcc
Q 007716 181 VSSDKFWFLTK-DRAFSLPSP-F-SNRGNYVISLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGI 256 (592)
Q Consensus 181 ~~~~~~~~~~~-~~~~~~~~~-~-~~~~~~~v~~~~l~~~L~~~a~~~-Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~ 256 (592)
.....+..... .....++.. . ....+|++.+..|...|.+.+++. |++++++++|++++.++++ + .|++.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~-~-~v~~~~--- 150 (384)
T PRK08849 76 CPYKRLETWEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEG-N-RVTLES--- 150 (384)
T ss_pred CccceEEEEeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCe-E-EEEECC---
Confidence 00111111111 111111111 0 111247788778999998888765 6999999999999887754 3 466654
Q ss_pred cCCCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeeEEEEEeecCCCCCCCcEEEEeccCC
Q 007716 257 AKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPL 336 (592)
Q Consensus 257 ~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~vr~~l~~~~~l~~~~~~~~~~~~~g~~~~~~i~~~~~~~g~~~~~~~~~~ 336 (592)
|.+++||+||+|||.+|.+|+++ ++.. .......+++ +..+.......+.....+ ++.
T Consensus 151 ------------g~~~~~~lvIgADG~~S~vR~~~----gi~~-~~~~~~~~~~----v~~~~~~~~~~~~~~~~~-~~~ 208 (384)
T PRK08849 151 ------------GAEIEAKWVIGADGANSQVRQLA----GIGI-TAWDYRQHCM----LINVETEQPQQDITWQQF-TPS 208 (384)
T ss_pred ------------CCEEEeeEEEEecCCCchhHHhc----CCCc-eeccCCCeEE----EEEEEcCCCCCCEEEEEe-CCC
Confidence 67899999999999999999976 4432 0111111111 112222212222222111 221
Q ss_pred CCCCcceEEEEEcCCCeEEEEEEeccc-CC-CCCCCcHHHHHHhhc-CccccccccCCceeeecceeeecCCccccCccc
Q 007716 337 DQKTYGGSFLYHMNDRQIALGLVVALN-YH-NPFLNPYEEFQKFKH-HPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPV 413 (592)
Q Consensus 337 ~~~~~g~~~~~~~~~~~~~vg~~~~~~-~~-~~~~~~~~~~~~~~~-~p~i~~~l~~~~~~~~~~~~i~~gg~~~~p~~~ 413 (592)
|...++|..++...+-+..... .. ....++.+..+.+.. .+ ..+..-....+ ...+. .....++|.
T Consensus 209 -----g~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~--~~~~l-~~~~~~~~~ 277 (384)
T PRK08849 209 -----GPRSFLPLCGNQGSLVWYDSPKRIKQLSAMNPEQLRSEILRHFP---AELGEIKVLQH--GSFPL-TRRHAQQYV 277 (384)
T ss_pred -----CCEEEeEcCCCceEEEEECCHHHHHHHHcCCHHHHHHHHHHHhh---hhhCcEEeccc--eEeec-cccccchhc
Confidence 2223467655443332322111 00 011222222222221 11 11111011111 11111 122456899
Q ss_pred CCCEEEEcCCCcccCCCCccchHHHHHHHHHHHHHHhhhcc-CCchHHHHHHHHHHhHHHHHHHHHHcchhhhh
Q 007716 414 FPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLH-EDSNMEIYWDTLQKSWVWQELQRARNYRPAFE 486 (592)
Q Consensus 414 ~~~v~LiGDAA~~~~P~~g~G~~~Am~dg~~aA~~l~~~~~-~~~~l~~Y~~~~~~~~~~~~l~~~r~~~~~~~ 486 (592)
.+|++|+|||||.|+|+.|||+|+||+||..|+++|..... ....|+.|++.|+.+ ....+...+.+..+|.
T Consensus 278 ~grv~LlGDAAH~~~P~~GQG~n~al~Da~~L~~~l~~~~~~~~~~L~~Ye~~R~~~-~~~~~~~~~~~~~~~~ 350 (384)
T PRK08849 278 KNNCVLLGDAAHTINPLAGQGVNLGFKDVDVLLAETEKQGVLNDASFARYERRRRPD-NLLMQTGMDLFYKTFS 350 (384)
T ss_pred cCCEEEEEcccccCCCCccchHhHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhHH-HHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999875322 246899999999875 6666676666666664
No 46
>PTZ00367 squalene epoxidase; Provisional
Probab=99.95 E-value=3.5e-26 Score=251.07 Aligned_cols=351 Identities=15% Similarity=0.198 Sum_probs=196.2
Q ss_pred ccccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccC
Q 007716 104 ESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSS 183 (592)
Q Consensus 104 ~~~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~ 183 (592)
...++||+||||||+|+++|+.|++. |++|+|+||..........|..+.+.++. .+..|...+.........
T Consensus 30 ~~~~~dViIVGaGiaGlalA~aLar~------G~~V~VlEr~~~~~~~r~~G~~L~p~g~~-~L~~LGL~d~l~~i~~~~ 102 (567)
T PTZ00367 30 TNYDYDVIIVGGSIAGPVLAKALSKQ------GRKVLMLERDLFSKPDRIVGELLQPGGVN-ALKELGMEECAEGIGMPC 102 (567)
T ss_pred cccCccEEEECCCHHHHHHHHHHHhc------CCEEEEEccccccccchhhhhhcCHHHHH-HHHHCCChhhHhhcCcce
Confidence 34579999999999999999999999 99999999976211112356678877663 333332211100111111
Q ss_pred CcEEEeec-CCcccCCCCCCCCCcEEEcHHHHHHHHHHHH---HHcCCEEecCceEEEEEEcCCC---cEEEEEeccCcc
Q 007716 184 DKFWFLTK-DRAFSLPSPFSNRGNYVISLSQLVRWLGGKA---EELGVEIYPGFAASEILYDADN---KVIGIGTNDMGI 256 (592)
Q Consensus 184 ~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a---~~~Gv~i~~g~~v~~i~~~~~g---~v~~V~~~d~g~ 256 (592)
..+.+... +....++.. ....++.++++.+.+.|.+.+ ...+|+++.+ .|+++..++.+ .+.+|++...+.
T Consensus 103 ~~~~v~~~~G~~~~i~~~-~~~~g~~~~rg~~~~~Lr~~a~~~~~~~V~v~~~-~v~~l~~~~~~~~~~v~gV~~~~~~~ 180 (567)
T PTZ00367 103 FGYVVFDHKGKQVKLPYG-AGASGVSFHFGDFVQNLRSHVFHNCQDNVTMLEG-TVNSLLEEGPGFSERAYGVEYTEAEK 180 (567)
T ss_pred eeeEEEECCCCEEEecCC-CCCceeEeEHHHHHHHHHHHHHhhcCCCcEEEEe-EEEEeccccCccCCeeEEEEEecCCc
Confidence 22333332 222222221 112355678999999998887 3457999754 78888665432 356676543110
Q ss_pred ----------cCCCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeeEEEEEeecCCCCCCC
Q 007716 257 ----------AKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPG 326 (592)
Q Consensus 257 ----------~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~vr~~l~~~~~l~~~~~~~~~~~~~g~~~~~~i~~~~~~~g 326 (592)
+.+........+|.+++||+||+|||.+|.+|+++ +... ..........|+.. ..... ..++
T Consensus 181 ~~~~~~~f~~~~~~~~~~~~~~g~~~~AdLvVgADG~~S~vR~~l----~~~~-~~~~~~s~~~g~~~-~~~~l--p~~~ 252 (567)
T PTZ00367 181 YDVPENPFREDPPSANPSATTVRKVATAPLVVMCDGGMSKFKSRY----QHYT-PASENHSHFVGLVL-KNVRL--PKEQ 252 (567)
T ss_pred ccccccccccccccccccccccceEEEeCEEEECCCcchHHHHHc----cCCC-CCcCcceEEEEEEE-ecccC--CCCC
Confidence 00000011122467899999999999999999987 2221 01112222233221 11111 1122
Q ss_pred cEEEEeccCCCCCCcceEEEEEcCCCeEEEEEEecccCCCCCCCcHHHHHHh-hc--Ccc----ccccc----cCCceee
Q 007716 327 EILHTLGWPLDQKTYGGSFLYHMNDRQIALGLVVALNYHNPFLNPYEEFQKF-KH--HPA----IKPLL----EGGTVVQ 395 (592)
Q Consensus 327 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~~~~~~~-~~--~p~----i~~~l----~~~~~~~ 395 (592)
....+++ ++ +..++||..++...+.+.+... ..+.. ++...+ .+ .|. +++.+ .....+
T Consensus 253 ~~~v~~g----~~--gpi~~yPl~~~~~r~lv~~~~~-~~p~~---~~~~~~l~~~~~p~l~~~l~~~f~~~l~~~~~l- 321 (567)
T PTZ00367 253 HGTVFLG----KT--GPILSYRLDDNELRVLVDYNKP-TLPSL---EEQSEWLIEDVAPHLPENMRESFIRASKDTKRI- 321 (567)
T ss_pred eeEEEEc----CC--ceEEEEEcCCCeEEEEEEecCC-cCCCh---HHHHHHHHHhhcccCcHHHHHHHHHhhcccCCe-
Confidence 1111222 22 4578999988887766554321 11111 111111 11 111 11111 110011
Q ss_pred ecceeeecCCccccCcccCCCEEEEcCCCcccCCCCccchHHHHHHHHHHHHHHhhhcc-------C----CchHH----
Q 007716 396 YGARTLNEGGLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLH-------E----DSNME---- 460 (592)
Q Consensus 396 ~~~~~i~~gg~~~~p~~~~~~v~LiGDAA~~~~P~~g~G~~~Am~dg~~aA~~l~~~~~-------~----~~~l~---- 460 (592)
+..+...+ +..++..+|++|||||||+++|+.|||+|+||+|+..|++.|..... + ...|+
T Consensus 322 ---~~~p~~~~-p~~~~~~~gvvLIGDAAH~mhP~~GQGmn~AleDA~~La~~L~~~~~~~~~d~~d~~~v~~aL~~~~~ 397 (567)
T PTZ00367 322 ---RSMPNARY-PPAFPSIKGYVGIGDHANQRHPLTGGGMTCCFSDCIRLAKSLTGIKSLRSIDQNEMAEIEDAIQAAIL 397 (567)
T ss_pred ---EEeeHhhC-CCccCCCCCEEEEEcccCCCCCcccccHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHHHHHHhHH
Confidence 11111111 12245678999999999999999999999999999999999975321 1 24466
Q ss_pred HHHHHHHHhHHHHHHHHHHcchhhhhh
Q 007716 461 IYWDTLQKSWVWQELQRARNYRPAFEY 487 (592)
Q Consensus 461 ~Y~~~~~~~~~~~~l~~~r~~~~~~~~ 487 (592)
.|++.|+.. .......++.+..+|..
T Consensus 398 ~Y~~~Rk~~-a~~i~~ls~aL~~lf~~ 423 (567)
T PTZ00367 398 SYARNRKTH-ASTINILSWALYSVFSS 423 (567)
T ss_pred HHHHHhhhh-HHHHHHHHHHHHHHhCh
Confidence 999988865 66666666666666654
No 47
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.95 E-value=1.3e-26 Score=247.11 Aligned_cols=335 Identities=14% Similarity=0.077 Sum_probs=190.4
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCc-----ccccCccChHHHHHhhHhhhhcCCCeee-
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAH-----IISGNVFEPRALNELLPQWKQEEAPIRV- 179 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~-----~~~g~~i~~~~l~~ll~~~~~~~~~~~~- 179 (592)
.++||+||||||+|+++|+.|++. |++|+|||+.+..... ......+.+.++ +++..|...+.....
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~~------G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~-~~l~~lGl~~~~~~~~ 76 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQH------GFSVAVLEHAAPAPFDADSQPDVRISAISAASV-ALLKGLGVWDAVQAMR 76 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhcC------CCEEEEEcCCCCCcccccCCCCceEEeccHHHH-HHHHHcCChhhhhhhh
Confidence 469999999999999999999998 9999999997632110 011234566655 344333221100000
Q ss_pred eccCCcEEEee-cCCcccCCC--CCCCCCcEEEcHHHHHHHHHHHHHHc-CCEEecCceEEEEEEcCCCcEEEEEeccCc
Q 007716 180 PVSSDKFWFLT-KDRAFSLPS--PFSNRGNYVISLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMG 255 (592)
Q Consensus 180 ~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~v~~~~l~~~L~~~a~~~-Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g 255 (592)
......+.... ....+.+.. ......+|.+++..|.+.|.+.+++. |++++++++++++..++++ +.|.+.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~-- 152 (391)
T PRK08020 77 SHPYRRLETWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDG--WELTLAD-- 152 (391)
T ss_pred CcccceEEEEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCe--EEEEECC--
Confidence 00001111100 111111110 00112357899999999999998887 8999999999999876643 3466554
Q ss_pred ccCCCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeeEEEEEeecCCCCCCCcEEEEeccC
Q 007716 256 IAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWP 335 (592)
Q Consensus 256 ~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~vr~~l~~~~~l~~~~~~~~~~~~~g~~~~~~i~~~~~~~g~~~~~~~~~ 335 (592)
|.+++||+||+|||.+|.+|+.+ ++.. .. +.....++......+ ....+.....+..
T Consensus 153 -------------g~~~~a~~vI~AdG~~S~vR~~~----~~~~-~~--~~y~~~~~~~~~~~~--~~~~~~~~~~~~~- 209 (391)
T PRK08020 153 -------------GEEIQAKLVIGADGANSQVRQMA----GIGV-HG--WQYRQSCMLISVKCE--NPPGDSTWQQFTP- 209 (391)
T ss_pred -------------CCEEEeCEEEEeCCCCchhHHHc----CCCc-cc--cCCCceEEEEEEEec--CCCCCEEEEEEcC-
Confidence 56899999999999999999865 4432 01 111112222122222 1122222222221
Q ss_pred CCCCCcceEEEEEcCCCeEEEEEEecccCCCC-CCCcHHHHH-HhhcCccccccccCCceeeecceeeecCCccccCccc
Q 007716 336 LDQKTYGGSFLYHMNDRQIALGLVVALNYHNP-FLNPYEEFQ-KFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPV 413 (592)
Q Consensus 336 ~~~~~~g~~~~~~~~~~~~~vg~~~~~~~~~~-~~~~~~~~~-~~~~~p~i~~~l~~~~~~~~~~~~i~~gg~~~~p~~~ 413 (592)
. |...++|..++...+.+......... ...+.+++. .+.. .+...+. +........++.. ....++|.
T Consensus 210 --~---g~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~--~~~~~~~~~~pl~-~~~~~~~~ 279 (391)
T PRK08020 210 --S---GPRAFLPLFDNWASLVWYDSPARIRQLQAMSMAQLQQEIAA--HFPARLG--AVTPVAAGAFPLT-RRHALQYV 279 (391)
T ss_pred --C---CCEEEeECCCCcEEEEEECCHHHHHHHHCCCHHHHHHHHHH--Hhhhhcc--ceEeccccEeecc-eeehhhhc
Confidence 1 23456787666666655432110000 001122222 1111 0011111 1111111112211 12456888
Q ss_pred CCCEEEEcCCCcccCCCCccchHHHHHHHHHHHHHHhhhccC------CchHHHHHHHHHHhHHHHHHHHHHcchhhh
Q 007716 414 FPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE------DSNMEIYWDTLQKSWVWQELQRARNYRPAF 485 (592)
Q Consensus 414 ~~~v~LiGDAA~~~~P~~g~G~~~Am~dg~~aA~~l~~~~~~------~~~l~~Y~~~~~~~~~~~~l~~~r~~~~~~ 485 (592)
.+|++|+|||||.++|+.|||+|+||+||..||+.|.+.... ...|+.|++.|+.+ ....+.....+..+|
T Consensus 280 ~~rv~LvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~-~~~~~~~~~~l~~~~ 356 (391)
T PRK08020 280 QPGLALVGDAAHTINPLAGQGVNLGYRDVDALLDVLVNARSYGEAWASEAVLKRYQRRRMAD-NLLMQSGMDLFYAGF 356 (391)
T ss_pred cCcEEEEechhhccCCcccchhHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999876421 26799999998865 444444444455555
No 48
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=99.95 E-value=3.1e-26 Score=246.00 Aligned_cols=337 Identities=18% Similarity=0.168 Sum_probs=195.4
Q ss_pred cEEEECCCHHHHHHHHHHHHhhhhcCCC-CcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhc------CCCeeeec
Q 007716 109 DVVIVGAGPAGLSAAIRLKQLCREKNVD-LSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQE------EAPIRVPV 181 (592)
Q Consensus 109 DVvIVGaG~aGl~aA~~La~~~~~~~~g-~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~------~~~~~~~~ 181 (592)
+|+||||||+||++|+.|++. | ++|+|+||.+.++. ...|-.+.+.++.. +..|... ........
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~------g~~~v~v~Er~~~~~~-~G~gi~l~~~~~~~-L~~lg~~~~~~~~~~~~~~~~ 73 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKH------SHLNVQLFEAAPAFGE-VGAGVSFGANAVRA-IVGLGLGEAYTQVADSTPAPW 73 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhc------CCCCEEEEecCCcCCC-CccceeeCccHHHH-HHHcCChhHHHHHhcCCCccC
Confidence 599999999999999999998 7 69999999887653 23344567766532 2233211 10000000
Q ss_pred cCCcEEEeecCCcccCCCC-CCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCC
Q 007716 182 SSDKFWFLTKDRAFSLPSP-FSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDG 260 (592)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G 260 (592)
....+.+......-.+... ....+...++|..|.+.|.+.+. ++.++++++|+++..++++ + .|.+.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~--~~~v~~~~~v~~i~~~~~~-~-~v~~~~------- 142 (414)
T TIGR03219 74 QDIWFEWRNGSDASYLGATIAPGVGQSSVHRADFLDALLKHLP--EGIASFGKRATQIEEQAEE-V-QVLFTD------- 142 (414)
T ss_pred cceeEEEEecCccceeeeeccccCCcccCCHHHHHHHHHHhCC--CceEEcCCEEEEEEecCCc-E-EEEEcC-------
Confidence 0000111111100000000 11122346889999999998764 3568899999999887654 3 466654
Q ss_pred CcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccce-eeEEEEEeecCCC-------CCC---CcEE
Q 007716 261 SKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYA-LGIKEVWEIDEGK-------HNP---GEIL 329 (592)
Q Consensus 261 ~~~~~f~~g~~i~a~~vI~A~G~~s~vr~~l~~~~~l~~~~~~~~~~~~-~g~~~~~~i~~~~-------~~~---g~~~ 329 (592)
|.+++||+||+|||.+|.+|+++....+.. ...+...+ ..+..+....... ... +...
T Consensus 143 --------g~~~~ad~vVgADG~~S~vR~~l~~~~~~~---~~~p~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (414)
T TIGR03219 143 --------GTEYRCDLLIGADGIKSALRDYVLQGQGQA---PVRPRFSGTCAYRGLVDSLQLREAYRAAGLDEHLVDVPQ 211 (414)
T ss_pred --------CCEEEeeEEEECCCccHHHHHHhcCccCCC---CCCccccCcEEEEEEeeHHHHhhhhccccccccccccce
Confidence 578999999999999999999885322211 11222222 1222222111000 000 1111
Q ss_pred EEeccCCCCCCcceEEEEEcCCCeE-EEEEEeccc------CCC--CC---CCcHHHHHHhhc-CccccccccCCceeee
Q 007716 330 HTLGWPLDQKTYGGSFLYHMNDRQI-ALGLVVALN------YHN--PF---LNPYEEFQKFKH-HPAIKPLLEGGTVVQY 396 (592)
Q Consensus 330 ~~~~~~~~~~~~g~~~~~~~~~~~~-~vg~~~~~~------~~~--~~---~~~~~~~~~~~~-~p~i~~~l~~~~~~~~ 396 (592)
.+++ .+ +..++||..++.. .+....... +.. ++ ....+..+.|.. +|.+.++++.......
T Consensus 212 ~~~~----~~--~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~ 285 (414)
T TIGR03219 212 MYLG----LD--GHILTFPVRQGRLINVVAFISDRSQPKPTWPSDTPWVREATQREMLDAFAGWGDAARALLECIPAPTL 285 (414)
T ss_pred EEEc----CC--CeEEEEECCCCcEEEEEEEEcCcccccCCCCCCCcccCccCHHHHHHHhcCCCHHHHHHHHhCCCCCc
Confidence 1111 11 2345677766543 222222110 000 00 111222333332 3555555543221110
Q ss_pred cceeeecCCccccCcccCCCEEEEcCCCcccCCCCccchHHHHHHHHHHHHHHhhhccC----CchHHHHHHHHHHhHHH
Q 007716 397 GARTLNEGGLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE----DSNMEIYWDTLQKSWVW 472 (592)
Q Consensus 397 ~~~~i~~gg~~~~p~~~~~~v~LiGDAA~~~~P~~g~G~~~Am~dg~~aA~~l~~~~~~----~~~l~~Y~~~~~~~~~~ 472 (592)
........+++|+.+|++|||||||.|.|+.|||+|+||+||..||++|...... ..+|+.|++.|+.+ +.
T Consensus 286 ----~~~~~~~~~~~w~~grv~LiGDAAH~m~P~~GqGa~~AieDA~~La~~L~~~~~~~~~~~~al~~Ye~~R~~r-~~ 360 (414)
T TIGR03219 286 ----WALHDLAELPGYVHGRVALIGDAAHAMLPHQGAGAGQGLEDAYFLARLLGDTELEAGDLPALLEAYDDVRRPR-AC 360 (414)
T ss_pred ----eeeeecccccceeeCcEEEEEcccCCCCCCcCcchHhHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHhHH-HH
Confidence 1111223567899999999999999999999999999999999999999865321 46899999999976 88
Q ss_pred HHHHHHHcchhhhh
Q 007716 473 QELQRARNYRPAFE 486 (592)
Q Consensus 473 ~~l~~~r~~~~~~~ 486 (592)
+.++.++....+++
T Consensus 361 ~~~~~s~~~~~~~~ 374 (414)
T TIGR03219 361 RVQRTSREAGELYE 374 (414)
T ss_pred HHHHHHHHHHHHhc
Confidence 88888888777664
No 49
>PRK07236 hypothetical protein; Provisional
Probab=99.95 E-value=5.2e-26 Score=242.02 Aligned_cols=330 Identities=17% Similarity=0.122 Sum_probs=183.5
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCc
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDK 185 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~ 185 (592)
+..||+||||||+||++|+.|++. |++|+|+||.+........|..+.+..+ +++..+...... ........
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~------G~~v~v~E~~~~~~~~~g~gi~l~~~~~-~~l~~lg~~~~~-~~~~~~~~ 76 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRA------GWDVDVFERSPTELDGRGAGIVLQPELL-RALAEAGVALPA-DIGVPSRE 76 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhC------CCCEEEEecCCCCcCCCCceeEeCHHHH-HHHHHcCCCccc-ccccCccc
Confidence 458999999999999999999999 9999999998743221222344667655 444444332111 11111112
Q ss_pred EEEeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccc
Q 007716 186 FWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKEN 265 (592)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~ 265 (592)
..+............. ....+.+..+.+.|.+.+ .+++|+++++|++++.++++ + .|.+.+
T Consensus 77 ~~~~~~~g~~~~~~~~---~~~~~~~~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~-v-~v~~~~------------ 137 (386)
T PRK07236 77 RIYLDRDGRVVQRRPM---PQTQTSWNVLYRALRAAF--PAERYHLGETLVGFEQDGDR-V-TARFAD------------ 137 (386)
T ss_pred eEEEeCCCCEeeccCC---CccccCHHHHHHHHHHhC--CCcEEEcCCEEEEEEecCCe-E-EEEECC------------
Confidence 2222222211000000 112246677888887654 34789999999999887643 3 466654
Q ss_pred cccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCccccee-eEEEEE---eecCCC--CCCCcEEEEeccCCCCC
Q 007716 266 FQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYAL-GIKEVW---EIDEGK--HNPGEILHTLGWPLDQK 339 (592)
Q Consensus 266 f~~g~~i~a~~vI~A~G~~s~vr~~l~~~~~l~~~~~~~~~~~~~-g~~~~~---~i~~~~--~~~g~~~~~~~~~~~~~ 339 (592)
|.+++||+||+|||.+|.+|+++.. -. .+...+. .+..+. .++... ........+.+ ++
T Consensus 138 ---g~~~~ad~vIgADG~~S~vR~~l~~---~~-----~~~~~g~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~----~~ 202 (386)
T PRK07236 138 ---GRRETADLLVGADGGRSTVRAQLLP---DV-----RPTYAGYVAWRGLVDEAALPPEARAALRDRFTFQLG----PG 202 (386)
T ss_pred ---CCEEEeCEEEECCCCCchHHHHhCC---CC-----CCCcCCeEEEEEecchHHcCchhhhhcccceEEEEc----CC
Confidence 6789999999999999999998732 11 1111111 111111 111100 00011111111 11
Q ss_pred CcceEEEEEcCC---------CeEEEEEEecccCC-------------------CCCCCcHHHHHHh----h--cCcccc
Q 007716 340 TYGGSFLYHMND---------RQIALGLVVALNYH-------------------NPFLNPYEEFQKF----K--HHPAIK 385 (592)
Q Consensus 340 ~~g~~~~~~~~~---------~~~~vg~~~~~~~~-------------------~~~~~~~~~~~~~----~--~~p~i~ 385 (592)
+..+.|+..+ ...++.+....+.. .+.....+.++.+ . -.|.+.
T Consensus 203 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 280 (386)
T PRK07236 203 --SHILGYPVPGEDGSTEPGKRRYNWVWYRNAPAGEELDELLTDRDGTRRPFSVPPGALRDDVLAELRDDAAELLAPVFA 280 (386)
T ss_pred --ceEEEEECCCCCCCcCCCCcEEEEEEEecCCCccchhhhcccCCCccccCCCCccccCHHHHHHHHHHHHHhcCHHHH
Confidence 1234444321 11222222211100 0000011111211 1 124455
Q ss_pred ccccCCceeeecceeeecCCccccCcccCCCEEEEcCCCcccCCCCccchHHHHHHHHHHHHHHhhhcc-CCchHHHHHH
Q 007716 386 PLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLH-EDSNMEIYWD 464 (592)
Q Consensus 386 ~~l~~~~~~~~~~~~i~~gg~~~~p~~~~~~v~LiGDAA~~~~P~~g~G~~~Am~dg~~aA~~l~~~~~-~~~~l~~Y~~ 464 (592)
++++..... +... + .. ...++|..+|++|||||||.++|+.|||+|+||+||..||++|..... ...+|..|++
T Consensus 281 ~~~~~~~~~-~~~~-~--~~-~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~aieDA~~La~~L~~~~~~~~~al~~Ye~ 355 (386)
T PRK07236 281 ELVEATAQP-FVQA-I--FD-LEVPRMAFGRVALLGDAAFVARPHTAAGVAKAAADAVALAEALAAAAGDIDAALAAWEA 355 (386)
T ss_pred HHHhhCcCc-hhhh-h--hc-ccCcccccCcEEEEecccccCCCcchhhHHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 554432211 1000 1 11 124678889999999999999999999999999999999999987533 2478999999
Q ss_pred HHHHhHHHHHHHHHHcchhhh
Q 007716 465 TLQKSWVWQELQRARNYRPAF 485 (592)
Q Consensus 465 ~~~~~~~~~~l~~~r~~~~~~ 485 (592)
.|+.+ ..+.+..++.+...+
T Consensus 356 ~R~~r-~~~~~~~s~~~~~~~ 375 (386)
T PRK07236 356 ERLAV-GAAIVARGRRLGARL 375 (386)
T ss_pred HhhHH-HHHHHHHHHHHHHHH
Confidence 99976 777777666554433
No 50
>PRK06126 hypothetical protein; Provisional
Probab=99.95 E-value=9.8e-26 Score=250.43 Aligned_cols=339 Identities=17% Similarity=0.134 Sum_probs=190.2
Q ss_pred cccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhh------cCCCee
Q 007716 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQ------EEAPIR 178 (592)
Q Consensus 105 ~~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~------~~~~~~ 178 (592)
.+++||+||||||+||++|+.|++. |++|+||||.+..... ..+..+.++++ +++..|.. ...+..
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~~------G~~v~viEr~~~~~~~-~ra~~l~~r~~-e~L~~lGl~~~l~~~g~~~~ 76 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGRR------GVDSILVERKDGTAFN-PKANTTSARSM-EHFRRLGIADEVRSAGLPVD 76 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHC------CCcEEEEeCCCCCCCC-CccccCCHHHH-HHHHhcChHHHHHhhcCCcc
Confidence 4579999999999999999999999 9999999998754322 24566778776 44443322 121211
Q ss_pred eeccCCcEEEee-cCC---cccCCCC--------------CCCCCcEEEcHHHHHHHHHHHHHHc-CCEEecCceEEEEE
Q 007716 179 VPVSSDKFWFLT-KDR---AFSLPSP--------------FSNRGNYVISLSQLVRWLGGKAEEL-GVEIYPGFAASEIL 239 (592)
Q Consensus 179 ~~~~~~~~~~~~-~~~---~~~~~~~--------------~~~~~~~~v~~~~l~~~L~~~a~~~-Gv~i~~g~~v~~i~ 239 (592)
. .....+... .+. .+..+.. ......+.+++..|.+.|.+.+++. |++|+++++|+++.
T Consensus 77 ~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~ 154 (545)
T PRK06126 77 Y--PTDIAYFTRLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFE 154 (545)
T ss_pred c--cCCceEEecCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEE
Confidence 0 001111100 000 0001000 0011245688999999999999875 79999999999998
Q ss_pred EcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeeEEEEEeec
Q 007716 240 YDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEID 319 (592)
Q Consensus 240 ~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~vr~~l~~~~~l~~~~~~~~~~~~~g~~~~~~i~ 319 (592)
.++++ +. +++.+ ..+|+. .+++||+||+|||++|.+|+++ ++.. .......+. +...+..+
T Consensus 155 ~~~~~-v~-v~~~~---~~~g~~-------~~i~ad~vVgADG~~S~VR~~l----gi~~-~g~~~~~~~--~~~~~~~~ 215 (545)
T PRK06126 155 QDADG-VT-ATVED---LDGGES-------LTIRADYLVGCDGARSAVRRSL----GISY-EGTSGLQRD--LSIYIRAP 215 (545)
T ss_pred ECCCe-EE-EEEEE---CCCCcE-------EEEEEEEEEecCCcchHHHHhc----CCcc-ccCCCcceE--EEEEEEcC
Confidence 87754 32 44432 122321 5799999999999999999876 5442 111111111 11122222
Q ss_pred CC-C-C-CCCcEEEEeccCCCCCCcceEEEEEcCC-CeEEEEEEecccCCCCCCCcHHHHHHhhcCccccccccCCceee
Q 007716 320 EG-K-H-NPGEILHTLGWPLDQKTYGGSFLYHMND-RQIALGLVVALNYHNPFLNPYEEFQKFKHHPAIKPLLEGGTVVQ 395 (592)
Q Consensus 320 ~~-~-~-~~g~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~vg~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~l~~~~~~~ 395 (592)
.. . . ......+++..| +.. +++++..+ +...+. ...........++.+..+.+... +...+. .+...
T Consensus 216 ~l~~~~~~~~~~~~~~~~p---~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~i~~ 286 (545)
T PRK06126 216 GLAALVGHDPAWMYWLFNP---DRR--GVLVAIDGRDEWLFH-QLRGGEDEFTIDDVDARAFVRRG--VGEDID-YEVLS 286 (545)
T ss_pred chHHHhcCCCceEEEEECC---Ccc--EEEEEECCCCeEEEE-EecCCCCCCCCCHHHHHHHHHHh--cCCCCC-eEEEe
Confidence 11 0 0 111122322222 222 34455433 222222 12111111112222221222210 000000 01111
Q ss_pred ecceeeecCCccccCcccCCCEEEEcCCCcccCCCCccchHHHHHHHHHHHHHHhhhccC---CchHHHHHHHHHHhHHH
Q 007716 396 YGARTLNEGGLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE---DSNMEIYWDTLQKSWVW 472 (592)
Q Consensus 396 ~~~~~i~~gg~~~~p~~~~~~v~LiGDAA~~~~P~~g~G~~~Am~dg~~aA~~l~~~~~~---~~~l~~Y~~~~~~~~~~ 472 (592)
... .. ......++|..+|++|+|||||.++|+.|||+|+||+||..||+.|...++. ...|+.|+++|+.. ..
T Consensus 287 ~~~--w~-~~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~N~gieDa~~La~~La~~~~~~~~~~lL~~Y~~eR~p~-~~ 362 (545)
T PRK06126 287 VVP--WT-GRRLVADSYRRGRVFLAGDAAHLFTPTGGYGMNTGIGDAVNLAWKLAAVLNGWAGPALLDSYEAERRPI-AA 362 (545)
T ss_pred ecc--cc-hhheehhhhccCCEEEechhhccCCCCcCcccchhHHHHHHHHHHHHHHHcCCCcHHHHhhhHHHhhHH-HH
Confidence 000 00 1122456788899999999999999999999999999999999999876544 46899999999864 55
Q ss_pred HHHHHHHcchhhh
Q 007716 473 QELQRARNYRPAF 485 (592)
Q Consensus 473 ~~l~~~r~~~~~~ 485 (592)
..+..++.....+
T Consensus 363 ~~~~~s~~~~~~~ 375 (545)
T PRK06126 363 RNTDYARRNADAL 375 (545)
T ss_pred HHHHHHHHHHHHh
Confidence 5555555443333
No 51
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.95 E-value=1.5e-25 Score=239.17 Aligned_cols=337 Identities=18% Similarity=0.194 Sum_probs=193.4
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCC---c-ccccCccChHHHHHhhHhhhhcCCCeeeec
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGA---H-IISGNVFEPRALNELLPQWKQEEAPIRVPV 181 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~---~-~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~ 181 (592)
+.+||+||||||||+++|+.|++.. ..|++|+||||...... . ...+..+.+.++.. +..+...........
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~---~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~-l~~lgl~~~~~~~~~ 77 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLS---HGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQ-LARLGVWQALADCAT 77 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcc---cCCCEEEEEeCCCcccccCCCCCccceeccHHHHHH-HHHCCChhhhHhhcC
Confidence 4689999999999999999998741 12999999999532211 0 11345566655422 222211100000000
Q ss_pred cCCcEEEeecCC--cccCCC--CCCCCCcEEEcHHHHHHHHHHHHHHc-CCEEecCceEEEEEEcCCCcEEEEEeccCcc
Q 007716 182 SSDKFWFLTKDR--AFSLPS--PFSNRGNYVISLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGI 256 (592)
Q Consensus 182 ~~~~~~~~~~~~--~~~~~~--~~~~~~~~~v~~~~l~~~L~~~a~~~-Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~ 256 (592)
....+.+..... ...+.. .......+.+.+..|.+.|.+.+.+. |++++++++|+++..++++ + .|++.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~-~-~v~~~~--- 152 (395)
T PRK05732 78 PITHIHVSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQGS-V-RVTLDD--- 152 (395)
T ss_pred CccEEEEecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCe-E-EEEECC---
Confidence 011111111100 001100 00111247789999999999988774 7999999999999876533 3 466654
Q ss_pred cCCCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccce-eeEEEEEeecCCCCCCCcEEEEeccC
Q 007716 257 AKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYA-LGIKEVWEIDEGKHNPGEILHTLGWP 335 (592)
Q Consensus 257 ~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~vr~~l~~~~~l~~~~~~~~~~~~-~g~~~~~~i~~~~~~~g~~~~~~~~~ 335 (592)
|.++.+|+||+|||.+|.+++++ ++.. . ...++ ..+.. .+.......+.....+.
T Consensus 153 ------------g~~~~a~~vI~AdG~~S~vr~~~----~~~~--~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-- 208 (395)
T PRK05732 153 ------------GETLTGRLLVAADGSHSALREAL----GIDW--Q--QHPYEQVAVIA--NVTTSEAHQGRAFERFT-- 208 (395)
T ss_pred ------------CCEEEeCEEEEecCCChhhHHhh----CCCc--c--ceecCCEEEEE--EEEecCCCCCEEEEeec--
Confidence 46799999999999999988865 4432 1 11111 11111 12211111222222221
Q ss_pred CCCCCcceEEEEEcCCCeEEEEEEecccCCC--CCCCcHHHHHHhhcC-c-cccccccCCceeeecceeeecCCccccCc
Q 007716 336 LDQKTYGGSFLYHMNDRQIALGLVVALNYHN--PFLNPYEEFQKFKHH-P-AIKPLLEGGTVVQYGARTLNEGGLQSIPY 411 (592)
Q Consensus 336 ~~~~~~g~~~~~~~~~~~~~vg~~~~~~~~~--~~~~~~~~~~~~~~~-p-~i~~~l~~~~~~~~~~~~i~~gg~~~~p~ 411 (592)
. .|..+++|.+++...+.+....+... ...+..+..+.+... + .+..+.+......| .+ .....++
T Consensus 209 --~--~g~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l---~~~~~~~ 278 (395)
T PRK05732 209 --E--HGPLALLPMSDGRCSLVWCHPLEDAEEVLSWSDAQFLAELQQAFGWRLGRITHAGKRSAY---PL---ALVTAAQ 278 (395)
T ss_pred --C--CCCEEEeECCCCCeEEEEECCHHHHHHHHcCCHHHHHHHHHHHHHhhhcceeecCCccee---cc---cccchhh
Confidence 1 13467889888877666554322100 011111122222211 0 01111110011111 01 1113357
Q ss_pred ccCCCEEEEcCCCcccCCCCccchHHHHHHHHHHHHHHhhhccC------CchHHHHHHHHHHhHHHHHHHHHHcchhhh
Q 007716 412 PVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE------DSNMEIYWDTLQKSWVWQELQRARNYRPAF 485 (592)
Q Consensus 412 ~~~~~v~LiGDAA~~~~P~~g~G~~~Am~dg~~aA~~l~~~~~~------~~~l~~Y~~~~~~~~~~~~l~~~r~~~~~~ 485 (592)
|..+|++|+|||||.++|+.|||+++||+||..||++|...+.. ..+|+.|++.|+.. ....+..++.+..+|
T Consensus 279 ~~~grv~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~~-~~~~~~~~~~~~~~~ 357 (395)
T PRK05732 279 QISHRLALVGNAAQTLHPIAGQGFNLGLRDVMSLAETLTQALARGEDIGDYAVLQRYQQRRQQD-REATIGFTDGLVRLF 357 (395)
T ss_pred hccCcEEEEeecccccCCccccccchHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999765422 25799999999865 777788888887777
Q ss_pred h
Q 007716 486 E 486 (592)
Q Consensus 486 ~ 486 (592)
.
T Consensus 358 ~ 358 (395)
T PRK05732 358 A 358 (395)
T ss_pred c
Confidence 5
No 52
>PRK11445 putative oxidoreductase; Provisional
Probab=99.94 E-value=5e-24 Score=223.71 Aligned_cols=305 Identities=20% Similarity=0.237 Sum_probs=174.1
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCC---CcccccCccChHHHHHhhHhhhhcCCCeeeeccCC
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVG---AHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSD 184 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g---~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~ 184 (592)
|||+||||||||+++|+.|++ .++|+|+||.+..+ ....+|+.+.+.++.. +..+.... +........
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~-------~~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~-L~~lgl~~-~~~~~~~~~ 72 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAG-------KMKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKS-FAKDGLTL-PKDVIANPQ 72 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhc-------cCCEEEEECCCccccccccCcCcCccCHHHHHH-HHHcCCCC-Ccceeeccc
Confidence 799999999999999999987 37999999987643 2334788899887643 33322210 100000000
Q ss_pred cEEEeecCCcccCCCCC---CCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCC
Q 007716 185 KFWFLTKDRAFSLPSPF---SNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGS 261 (592)
Q Consensus 185 ~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~ 261 (592)
.+.. ..+.+.... .....+.++|.+|.++|.+. .+.||++++++.++++..++++ + .|.+.+ +|+
T Consensus 73 ~~~~----~~~~~~~~~~~~~~~~~~~i~R~~~~~~L~~~-~~~gv~v~~~~~v~~i~~~~~~-~-~v~~~~-----~g~ 140 (351)
T PRK11445 73 IFAV----KTIDLANSLTRNYQRSYINIDRHKFDLWLKSL-IPASVEVYHNSLCRKIWREDDG-Y-HVIFRA-----DGW 140 (351)
T ss_pred ccee----eEecccccchhhcCCCcccccHHHHHHHHHHH-HhcCCEEEcCCEEEEEEEcCCE-E-EEEEec-----CCc
Confidence 0000 001111000 11123469999999999985 4578999999999999877654 2 355421 222
Q ss_pred cccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeeEEEEEeecCCCCCCCcEEEEeccCCCCCCc
Q 007716 262 KKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTY 341 (592)
Q Consensus 262 ~~~~f~~g~~i~a~~vI~A~G~~s~vr~~l~~~~~l~~~~~~~~~~~~~g~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~ 341 (592)
..+++||+||+|||.+|.+|+++. ... ......++...+.... ..+... ..+.... ..
T Consensus 141 -------~~~i~a~~vV~AdG~~S~vr~~l~----~~~-----~~~~~~~~~~~~~~~~--~~~~~~-~~f~~~~---~~ 198 (351)
T PRK11445 141 -------EQHITARYLVGADGANSMVRRHLY----PDH-----QIRKYVAIQQWFAEKH--PVPFYS-CIFDNEI---TD 198 (351)
T ss_pred -------EEEEEeCEEEECCCCCcHHhHHhc----CCC-----chhhEEEEEEEecCCC--CCCCcc-eEEeccC---CC
Confidence 137999999999999999999772 221 1112233333222111 111111 1111111 12
Q ss_pred ceEEEEEcCCCeEEEEEEecccCCCCCCCcHHHHHHhhcCccccc-cccCCceeeecceeeecCCccccCc--ccCCCEE
Q 007716 342 GGSFLYHMNDRQIALGLVVALNYHNPFLNPYEEFQKFKHHPAIKP-LLEGGTVVQYGARTLNEGGLQSIPY--PVFPGGA 418 (592)
Q Consensus 342 g~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~~~~~~~~~~p~i~~-~l~~~~~~~~~~~~i~~gg~~~~p~--~~~~~v~ 418 (592)
++.|.+|.++ .+.+|.... ...+.+.++.++. .+.. ....++.+......+... ...++ +..+|++
T Consensus 199 ~~~W~~p~~~-~~~~g~~~~------~~~~~~~~~~l~~--~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~vv 267 (351)
T PRK11445 199 CYSWSISKDG-YFIFGGAYP------MKDGRERFETLKE--KLSAFGFQFGKPVKTEACTVLRP--SRWQDFVCGKDNAF 267 (351)
T ss_pred ceEEEeCCCC-cEEeccccc------ccchHHHHHHHHH--HHHhcccccccccccccccccCc--ccccccccCCCCEE
Confidence 4578888865 445542221 1112222222111 0000 000111111100001100 11122 2347999
Q ss_pred EEcCCCcccCCCCccchHHHHHHHHHHHHHHhhhccCCchHHHHHHHHHH
Q 007716 419 IIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHEDSNMEIYWDTLQK 468 (592)
Q Consensus 419 LiGDAA~~~~P~~g~G~~~Am~dg~~aA~~l~~~~~~~~~l~~Y~~~~~~ 468 (592)
|||||||+++|.+|+|++.||+||..||++|.+.. ...++.|++.+++
T Consensus 268 lVGDAAg~i~P~tG~Gi~~al~sa~~la~~l~~~~--~~~~~~y~~~~~~ 315 (351)
T PRK11445 268 LIGEAAGFISPSSLEGISYALDSARILSEVLNKQP--EKLNTAYWRKTRK 315 (351)
T ss_pred EEEcccCccCCccCccHHHHHHhHHHHHHHHHhcc--cchHHHHHHHHHH
Confidence 99999999999999999999999999999998765 4568899998886
No 53
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=99.93 E-value=8.2e-24 Score=233.50 Aligned_cols=332 Identities=15% Similarity=0.063 Sum_probs=184.8
Q ss_pred ccccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCC-CCCcc--cccCccChHHHHHhhHhhh--------h
Q 007716 104 ESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAE-VGAHI--ISGNVFEPRALNELLPQWK--------Q 172 (592)
Q Consensus 104 ~~~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~-~g~~~--~~g~~i~~~~l~~ll~~~~--------~ 172 (592)
+.+..+|+||||||+||++|+.|++. |++|+|+||... ..+.. ..+-.+.++++.- +..+. .
T Consensus 78 ~~~~~~VlIVGgGIaGLalAlaL~r~------Gi~V~V~Er~~~~~r~~G~~~~~I~L~pngl~a-Le~LGl~~~e~l~~ 150 (668)
T PLN02927 78 KKKKSRVLVAGGGIGGLVFALAAKKK------GFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAA-LEAIDIDVAEQVME 150 (668)
T ss_pred ccCCCCEEEECCCHHHHHHHHHHHhc------CCeEEEEeccccccccccccCcccccCHHHHHH-HHHcCcchHHHHHh
Confidence 35678999999999999999999999 999999999752 11111 1134467766532 22221 1
Q ss_pred cCCCeeeeccCCcE-EEeec-CCc--ccCCC--CCC---CCCcEEEcHHHHHHHHHHHHHHcCC-EEecCceEEEEEEcC
Q 007716 173 EEAPIRVPVSSDKF-WFLTK-DRA--FSLPS--PFS---NRGNYVISLSQLVRWLGGKAEELGV-EIYPGFAASEILYDA 242 (592)
Q Consensus 173 ~~~~~~~~~~~~~~-~~~~~-~~~--~~~~~--~~~---~~~~~~v~~~~l~~~L~~~a~~~Gv-~i~~g~~v~~i~~~~ 242 (592)
..... ...+ .+.+. ... ..++. +.. ....+.++|..|.+.|.+.+ +. .++++++|++++.++
T Consensus 151 ~g~~~-----~~~i~~~~d~~~G~~~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~al---g~~~i~~g~~V~~I~~~~ 222 (668)
T PLN02927 151 AGCIT-----GDRINGLVDGISGSWYVKFDTFTPAASRGLPVTRVISRMTLQQILARAV---GEDVIRNESNVVDFEDSG 222 (668)
T ss_pred hcCcc-----cceeeeeeecCCCceEeeccccccccccCCCeEEEEeHHHHHHHHHhhC---CCCEEEcCCEEEEEEEeC
Confidence 11110 0011 01110 000 11110 000 11246899999999997653 43 367899999998766
Q ss_pred CCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccce-eeEEEEEeecCC
Q 007716 243 DNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYA-LGIKEVWEIDEG 321 (592)
Q Consensus 243 ~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~vr~~l~~~~~l~~~~~~~~~~~~-~g~~~~~~i~~~ 321 (592)
+ .| .|.+.+ |.++.+|+||+|||++|.+|+++. +... +...+ ..+..+....+.
T Consensus 223 d-~V-tV~~~d---------------G~ti~aDlVVGADG~~S~vR~~l~---g~~~-----~~~sG~~~~rgi~~~~p~ 277 (668)
T PLN02927 223 D-KV-TVVLEN---------------GQRYEGDLLVGADGIWSKVRNNLF---GRSE-----ATYSGYTCYTGIADFIPA 277 (668)
T ss_pred C-EE-EEEECC---------------CCEEEcCEEEECCCCCcHHHHHhc---CCCC-----CcccceEEEEEEcCCCcc
Confidence 3 34 366654 568899999999999999999873 3321 11111 111212222111
Q ss_pred CC-CCCcEEEEeccCCCCCCcceEEEEEcCCCeEEEEEEecccCC--C-CCCCcHHHHHHhhc-CccccccccCCceeee
Q 007716 322 KH-NPGEILHTLGWPLDQKTYGGSFLYHMNDRQIALGLVVALNYH--N-PFLNPYEEFQKFKH-HPAIKPLLEGGTVVQY 396 (592)
Q Consensus 322 ~~-~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~vg~~~~~~~~--~-~~~~~~~~~~~~~~-~p~i~~~l~~~~~~~~ 396 (592)
.. ..+ ...+.+ .. .....++..++.+.+-........ . +.....+..+.|.. .|.+.++++.......
T Consensus 278 ~~~~~~-~~~~~G----~~--~~~v~~~v~~g~~~~~~f~~~p~~~~~~~~~~~e~L~~~f~~w~~~v~elI~~t~~~~i 350 (668)
T PLN02927 278 DIESVG-YRVFLG----HK--QYFVSSDVGGGKMQWYAFHEEPAGGADAPNGMKKRLFEIFDGWCDNVLDLLHATEEDAI 350 (668)
T ss_pred cccccc-eEEEEc----CC--eEEEEEcCCCCeEEEEEEEECCccccccchhHHHHHHHHhccCCHHHHHHHHhCccccc
Confidence 10 111 111111 11 112233444444433222211110 0 00011112223322 3455555542211000
Q ss_pred cceeeecCCccccCcccCCCEEEEcCCCcccCCCCccchHHHHHHHHHHHHHHhhhccC----------CchHHHHHHHH
Q 007716 397 GARTLNEGGLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE----------DSNMEIYWDTL 466 (592)
Q Consensus 397 ~~~~i~~gg~~~~p~~~~~~v~LiGDAA~~~~P~~g~G~~~Am~dg~~aA~~l~~~~~~----------~~~l~~Y~~~~ 466 (592)
....+ ....+.++|+.+|++|+|||||.|.|..|||+++||+||..||++|..++.. ..+|+.|++.|
T Consensus 351 ~~~~i--yd~~p~~~W~~grVvLiGDAAH~~~P~~GqG~n~AieDa~~La~~L~~~~~~~~~~~~~~~~~~aL~~Ye~~R 428 (668)
T PLN02927 351 LRRDI--YDRSPGFTWGKGRVTLLGDSIHAMQPNMGQGGCMAIEDSFQLALELDEAWKQSVETNTPVDVVSSLKRYEESR 428 (668)
T ss_pred eeeeE--EeccCCCccccCcEEEEcCccCCCCCccccchHHHHHHHHHHHHHHHHhhccccccCCcccHHHHHHHHHHHH
Confidence 00111 1123445898999999999999999999999999999999999999876421 26899999999
Q ss_pred HHhHHHHHHHHHHcchhhh
Q 007716 467 QKSWVWQELQRARNYRPAF 485 (592)
Q Consensus 467 ~~~~~~~~l~~~r~~~~~~ 485 (592)
+.+ +.+.+..++.....+
T Consensus 429 ~~r-v~~i~~~ar~a~~~~ 446 (668)
T PLN02927 429 RLR-VAIIHAMARMAAIMA 446 (668)
T ss_pred HHH-HHHHHHHHHHHHHHH
Confidence 875 666666655544444
No 54
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=99.92 E-value=1.2e-24 Score=220.36 Aligned_cols=301 Identities=19% Similarity=0.180 Sum_probs=147.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccC-----hHHHHHhh--HhhhhcCCCeee
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFE-----PRALNELL--PQWKQEEAPIRV 179 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~-----~~~l~~ll--~~~~~~~~~~~~ 179 (592)
+.+|||||||++||++|+.|+|. |++|+|+|++..+.+. |..|+ .++|+.+. +.......|+..
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~------G~~v~VlE~~e~~R~~---g~si~L~~ng~~aLkai~~~e~i~~~gip~~~ 72 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRK------GIDVVVLESREDPRGE---GTSINLALNGWRALKAIGLKEQIREQGIPLGG 72 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHc------CCeEEEEeeccccccC---CcceeehhhHHHHHHHcccHHHHHHhcCcccc
Confidence 45799999999999999999999 9999999998766553 33322 12332221 222223333332
Q ss_pred eccCCcEEEeecCC-cccCCCCCCCCCcEE--EcHHHHHHHHHHHHHHcCCEEecCc------eEEEEEEcCCCcEEEEE
Q 007716 180 PVSSDKFWFLTKDR-AFSLPSPFSNRGNYV--ISLSQLVRWLGGKAEELGVEIYPGF------AASEILYDADNKVIGIG 250 (592)
Q Consensus 180 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--v~~~~l~~~L~~~a~~~Gv~i~~g~------~v~~i~~~~~g~v~~V~ 250 (592)
.+ +.....+. ...++ ....+.|+ +.+..+.+.+...|+.. -+|.+++ ....++.-... ..|.
T Consensus 73 ~v----~~~~~sg~~~~~~~--~~~~~~~i~r~~~r~ll~~lL~~a~~~-~~ikf~~~~~~~~~~~~~~~~~~~--~~v~ 143 (420)
T KOG2614|consen 73 RV----LIHGDSGKEVSRIL--YGEPDEYILRINRRNLLQELLAEALPT-GTIKFHSNLSCTSKDVEIETLGKK--LVVH 143 (420)
T ss_pred ee----eeecCCCCeeEecc--cCCchHHHHHHHHHHHHHHHHHhhcCC-Ceeecccccccccccceeeecccc--ccee
Confidence 21 00000111 11121 12222332 34555555555555543 3455554 22222222111 1244
Q ss_pred eccCcccCCCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeeEEEEEeecCCCCCCCcE--
Q 007716 251 TNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEI-- 328 (592)
Q Consensus 251 ~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~vr~~l~~~~~l~~~~~~~~~~~~~g~~~~~~i~~~~~~~g~~-- 328 (592)
+.| |.++++|++|+|||++|.||+.|..+. ++. .......++|+ ++........+
T Consensus 144 l~~---------------g~~~~~dlligCDGa~S~Vr~~l~~~~-p~~--~~~~ayrg~~~-----~~~~~~~~~~vf~ 200 (420)
T KOG2614|consen 144 LSD---------------GTTVKGDLLIGCDGAYSKVRKWLGFKE-PRY--DGSQAYRGLGF-----IPNGIPFGKKVFA 200 (420)
T ss_pred cCC---------------CcEEEeeEEEEcCchHHHHHHHhcccC-Ccc--eeEEEEeeeee-----ccCCCCcccceec
Confidence 443 789999999999999999999884332 221 11111222222 22211111111
Q ss_pred ---EEEeccCCCCCCcceEEEEEcCCCeEEEEEEecccCCCCC---CCcHHHHHHhhc-CccccccccCCceeee-ccee
Q 007716 329 ---LHTLGWPLDQKTYGGSFLYHMNDRQIALGLVVALNYHNPF---LNPYEEFQKFKH-HPAIKPLLEGGTVVQY-GART 400 (592)
Q Consensus 329 ---~~~~~~~~~~~~~g~~~~~~~~~~~~~vg~~~~~~~~~~~---~~~~~~~~~~~~-~p~i~~~l~~~~~~~~-~~~~ 400 (592)
-+...|+..... ...|..-+......+.... .++. ..+.+.++.|.+ .|.+-+++.....+.- ....
T Consensus 201 ~~~~~~~~~~~~~~~---~~~y~~~~k~~t~t~~~~~--~e~~~l~~~~~~v~~~~~en~~d~i~~~~~e~i~~t~l~~r 275 (420)
T KOG2614|consen 201 IYGNGLHSWPRPGFH---LIAYWFLDKSLTSTDFAPF--DEPEKLKKTSLEVVDFFPENFPDIIELTGEESIVRTPLADR 275 (420)
T ss_pred ccCCeEEEcccCCce---EEEEEeecCCcccccccCc--CCHHHHhhhHHHHHHHhHHhHHHHHHhcChHHhhhchhhhc
Confidence 112223332211 1112111111221111111 1111 122333333332 1333333221111110 0000
Q ss_pred eecCCccccCcccCCCEEEEcCCCcccCCCCccchHHHHHHHHHHHHHHhhhccC
Q 007716 401 LNEGGLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE 455 (592)
Q Consensus 401 i~~gg~~~~p~~~~~~v~LiGDAA~~~~P~~g~G~~~Am~dg~~aA~~l~~~~~~ 455 (592)
-|+.. -.++....+++|+|||||+|.|+.|||+|+||+|+.+||++|.++..+
T Consensus 276 ~p~~~--i~~~~s~~~vvL~GDAaHaM~Pf~GQG~n~a~ED~~VLa~~L~~~~~d 328 (420)
T KOG2614|consen 276 PPWPL--ISVKCSPGNVVLLGDAAHAMTPFLGQGGNCAFEDCVVLAECLDEAIND 328 (420)
T ss_pred CCcCe--eeeccCCCeEEEecccccccCCcccccccchHHHHHHHHHHHHHhccc
Confidence 01100 112334458999999999999999999999999999999999998764
No 55
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.92 E-value=2.6e-22 Score=213.86 Aligned_cols=305 Identities=17% Similarity=0.152 Sum_probs=174.9
Q ss_pred cEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHh-hHhhhhcCCCeeeeccCCcEE
Q 007716 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNEL-LPQWKQEEAPIRVPVSSDKFW 187 (592)
Q Consensus 109 DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l-l~~~~~~~~~~~~~~~~~~~~ 187 (592)
||+||||||||+++|+.|++. |++|+|||+.+.+++... .++....+.++ +..... .... ....
T Consensus 1 DviIiGaG~AGl~~A~~la~~------g~~v~liE~~~~~~~~~~--~~~~~~~~~~~~~~~~~~------~~~~-~~~~ 65 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARP------GLRVQLIEPHPPIPGNHT--YGVWDDDLSDLGLADCVE------HVWP-DVYE 65 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhC------CCeEEEEccCCCCCCCcc--ccccHhhhhhhchhhHHh------hcCC-CceE
Confidence 899999999999999999998 999999999877664321 11111112111 000000 0000 0011
Q ss_pred EeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccc
Q 007716 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (592)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~ 267 (592)
+........+ ......+++..|.+.|.+++.+.|++++ ...|+++..++++ .+.|++.+
T Consensus 66 ~~~~~~~~~~-----~~~~~~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~~-~~~v~~~~-------------- 124 (388)
T TIGR01790 66 YRFPKQPRKL-----GTAYGSVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEADGVA-LSTVYCAG-------------- 124 (388)
T ss_pred EecCCcchhc-----CCceeEEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEecCCc-eeEEEeCC--------------
Confidence 1111111111 1223458999999999999999999997 4578888766323 44566654
Q ss_pred cceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeeEEEEEeecCCCCCCCcEEEEeccCCCCC------Cc
Q 007716 268 RGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQK------TY 341 (592)
Q Consensus 268 ~g~~i~a~~vI~A~G~~s~vr~~l~~~~~l~~~~~~~~~~~~~g~~~~~~i~~~~~~~g~~~~~~~~~~~~~------~~ 341 (592)
|.+++||+||+|+|.+|.+++.. .+.. .......|+. ++++.....++.. ..+.+..... ..
T Consensus 125 -g~~~~a~~VI~A~G~~s~~~~~~---~~~~-----~~~q~~~G~~--~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~~~ 192 (388)
T TIGR01790 125 -GQRIQARLVIDARGFGPLVQYVR---FPLN-----VGFQVAYGVE--ARLSRPPHGPSSM-VIMDARVDQLAAPELKGY 192 (388)
T ss_pred -CCEEEeCEEEECCCCchhccccc---CCCC-----ceEEEEEEEE--EEEcCCCCCCCce-EEEeccccccccccccCC
Confidence 56899999999999998553311 1111 1111233332 2333222222221 2222221110 12
Q ss_pred c--eEEEEEcCCCeEEEEEEecccCCCCCCCcHHHHHH-hhcCccccc-cccCCceeeecceeeecCCccccCcccCCCE
Q 007716 342 G--GSFLYHMNDRQIALGLVVALNYHNPFLNPYEEFQK-FKHHPAIKP-LLEGGTVVQYGARTLNEGGLQSIPYPVFPGG 417 (592)
Q Consensus 342 g--~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~~~~~~-~~~~p~i~~-~l~~~~~~~~~~~~i~~gg~~~~p~~~~~~v 417 (592)
+ ..|++|.+++.+.|+...... .+... .+++.. +.. .+.. -+...+.+......+|.++.. + ...+|+
T Consensus 193 ~~~f~~~lP~~~~~~~v~~~~~~~--~~~~~-~~~~~~~l~~--~~~~~g~~~~~i~~~~~~~iP~~~~~--~-~~~~rv 264 (388)
T TIGR01790 193 RPTFLYAMPLGSTRVFIEETSLAD--RPALP-RDRLRQRILA--RLNAQGWQIKTIEEEEWGALPVGLPG--P-FLPQRV 264 (388)
T ss_pred CCceEEEeecCCCeEEEEeccccC--CCCCC-HHHHHHHHHH--HHHHcCCeeeEEEeeeeEEEecccCC--C-ccCCCe
Confidence 2 578899988888776432111 11122 222222 111 0000 011112222222345554432 2 367899
Q ss_pred EEEcCCCcccCCCCccchHHHHHHHHHHHHHHhhhccCC--chHHHHHHHHHHh
Q 007716 418 AIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHED--SNMEIYWDTLQKS 469 (592)
Q Consensus 418 ~LiGDAA~~~~P~~g~G~~~Am~dg~~aA~~l~~~~~~~--~~l~~Y~~~~~~~ 469 (592)
++||||||.++|.+|+|++.|+++|..+|+.|.+++..+ ..++.|++.++..
T Consensus 265 ~liGdAAg~~~P~tG~Gi~~al~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 318 (388)
T TIGR01790 265 AAFGAAAGMVHPTTGYSVARALSDAPGLAAAIAQALCQSSELATAAWDGLWPTE 318 (388)
T ss_pred eeeechhcCcCCcccccHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHhchHH
Confidence 999999999999999999999999999999999887543 5677887665543
No 56
>PLN02697 lycopene epsilon cyclase
Probab=99.91 E-value=2.1e-21 Score=211.16 Aligned_cols=319 Identities=15% Similarity=0.148 Sum_probs=187.0
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHh-hHhhhhcCCCeeeeccCC
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNEL-LPQWKQEEAPIRVPVSSD 184 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l-l~~~~~~~~~~~~~~~~~ 184 (592)
..+||+|||||||||++|+.|++. |++|+|||+....... .++....+.++ +..... .... .
T Consensus 107 ~~~DVvIVGaGPAGLalA~~Lak~------Gl~V~LIe~~~p~~~n----~GvW~~~l~~lgl~~~i~------~~w~-~ 169 (529)
T PLN02697 107 GTLDLVVIGCGPAGLALAAESAKL------GLNVGLIGPDLPFTNN----YGVWEDEFKDLGLEDCIE------HVWR-D 169 (529)
T ss_pred CcccEEEECcCHHHHHHHHHHHhC------CCcEEEecCcccCCCc----cccchhHHHhcCcHHHHH------hhcC-C
Confidence 459999999999999999999998 9999999986433221 11222222211 010000 0011 1
Q ss_pred cEEEeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCccc
Q 007716 185 KFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKE 264 (592)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~ 264 (592)
...+......... ......++|..|.+.|.+++.+.|+++ .+..|+++..++++ +..|.+.+
T Consensus 170 ~~v~~~~~~~~~~-----~~~Yg~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~-~~vv~~~d----------- 231 (529)
T PLN02697 170 TIVYLDDDKPIMI-----GRAYGRVSRTLLHEELLRRCVESGVSY-LSSKVDRITEASDG-LRLVACED----------- 231 (529)
T ss_pred cEEEecCCceeec-----cCcccEEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCc-EEEEEEcC-----------
Confidence 1111111111111 111225899999999999999999998 57799998876644 32344443
Q ss_pred ccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeeEEEEEeecCCCCCCCcEEEEeccC---------
Q 007716 265 NFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWP--------- 335 (592)
Q Consensus 265 ~f~~g~~i~a~~vI~A~G~~s~vr~~l~~~~~l~~~~~~~~~~~~~g~~~~~~i~~~~~~~g~~~~~~~~~--------- 335 (592)
|.+++|++||+|+|.+|. +.+ +........+.....|+. +++....+.++. ...+.|.
T Consensus 232 ----G~~i~A~lVI~AdG~~S~--rl~----~~~~~~~~~~~Q~a~Gi~--ve~~~~~~d~~~-~vlMD~r~~~~~~~~~ 298 (529)
T PLN02697 232 ----GRVIPCRLATVASGAASG--RLL----QYEVGGPRVCVQTAYGVE--VEVENNPYDPSL-MVFMDYRDYFKEKVSH 298 (529)
T ss_pred ----CcEEECCEEEECCCcChh--hhh----ccccCCCCcccEEEEEEE--EEecCCCCCcch-heeecccccccccccc
Confidence 578999999999999983 211 111000011223334443 233322233332 2222221
Q ss_pred CCCCCcceEEEEEcCCCeEEE-EEEecccCCCCCCCcHHHH----HHhhcCccccccccCCceeeecceeeecCCccccC
Q 007716 336 LDQKTYGGSFLYHMNDRQIAL-GLVVALNYHNPFLNPYEEF----QKFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSIP 410 (592)
Q Consensus 336 ~~~~~~g~~~~~~~~~~~~~v-g~~~~~~~~~~~~~~~~~~----~~~~~~p~i~~~l~~~~~~~~~~~~i~~gg~~~~p 410 (592)
...+.++..|++|.+++.+.| +.... ..+.+. .+.+ ..+..+.. +...+.++.....||.++ ++|
T Consensus 299 ~~~~~p~FlYvlP~~~~~~~VE~T~l~---~~~~l~-~~~l~~~L~~~l~~~G----i~~~~i~~~E~g~iPm~g--~~~ 368 (529)
T PLN02697 299 LEAEYPTFLYAMPMSSTRVFFEETCLA---SKDAMP-FDLLKKRLMSRLETMG----IRILKTYEEEWSYIPVGG--SLP 368 (529)
T ss_pred ccCCCceEEEEeecCCCeEEEEEeeec---cCCCCC-HHHHHHHHHHHHHhCC----CCcceEEEEEeeeecCCC--CCc
Confidence 112234557889999999888 44321 112122 2222 22222211 122344444455677766 335
Q ss_pred cccCCCEEEEcCCCcccCCCCccchHHHHHHHHHHHHHHhhhccCC-------------chHHHHHHHHHHhHHHHHHHH
Q 007716 411 YPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHED-------------SNMEIYWDTLQKSWVWQELQR 477 (592)
Q Consensus 411 ~~~~~~v~LiGDAA~~~~P~~g~G~~~Am~dg~~aA~~l~~~~~~~-------------~~l~~Y~~~~~~~~~~~~l~~ 477 (592)
.. .+++++|||||++++|.+|.|+..+|.+|..+|++|+++++.+ ..++.|+++|.+. .+++.+.
T Consensus 369 ~~-~~~vl~vG~AAG~vhPsTGy~v~~~l~~A~~~A~~ia~~l~~~~~~~~~~~~~~~~~~l~~~~~lw~~e-~~r~~~~ 446 (529)
T PLN02697 369 NT-EQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIARILKNVSSGGKLGTSNSSNISMQAWNTLWPQE-RKRQRAF 446 (529)
T ss_pred cc-CCCeeEeehhhcCCCCchhhhHHHHHHhHHHHHHHHHHHhhCCccccccccccchHHHHHHHHHhChHH-HHHHHHH
Confidence 54 6799999999999999999999999999999999999988643 2367788877654 4444444
Q ss_pred HHcchhh
Q 007716 478 ARNYRPA 484 (592)
Q Consensus 478 ~r~~~~~ 484 (592)
....+.+
T Consensus 447 ~~~g~~~ 453 (529)
T PLN02697 447 FLFGLAL 453 (529)
T ss_pred HHHHHHH
Confidence 4333333
No 57
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=99.89 E-value=2.4e-22 Score=230.11 Aligned_cols=319 Identities=18% Similarity=0.165 Sum_probs=176.6
Q ss_pred cEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhc-CCCeeee-ccCCcE
Q 007716 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQE-EAPIRVP-VSSDKF 186 (592)
Q Consensus 109 DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~-~~~~~~~-~~~~~~ 186 (592)
+|+|||||||||++|+.|++. ++|++|+|+||.+... ....|..+.+..+..+ ..+... ...+... ...+..
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~----~~G~~V~vlEr~~~~~-~~G~Gi~ls~~~l~~L-~~~~~~~~~~~~~~~~~~~~~ 75 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLL----DPAHEVTVVERNRPYD-TFGWGVVFSDATLGNL-RAADPVSAAAIGDAFNHWDDI 75 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHh----CCCCeEEEEecCCCCc-ccCcceEccHHHHHHH-HhcCHHHHHHHHHhcccCCce
Confidence 699999999999999999986 3479999999987542 2223445666655333 222110 0000000 001111
Q ss_pred EEeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCccccc
Q 007716 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (592)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f 266 (592)
.+...+.... ....+...++|..|.+.|.+++++.||+|+++++++++. +
T Consensus 76 ~~~~~g~~~~----~~g~~~~~i~R~~L~~~L~e~a~~~GV~i~~g~~v~~i~-------------~------------- 125 (765)
T PRK08255 76 DVHFKGRRIR----SGGHGFAGIGRKRLLNILQARCEELGVKLVFETEVPDDQ-------------A------------- 125 (765)
T ss_pred EEEECCEEEE----ECCeeEecCCHHHHHHHHHHHHHHcCCEEEeCCccCchh-------------h-------------
Confidence 1111111110 011122358999999999999999999999999875431 0
Q ss_pred ccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeeEEEEEeecCCCCCCCcEEEEeccCCCCCCcceEEE
Q 007716 267 QRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGGSFL 346 (592)
Q Consensus 267 ~~g~~i~a~~vI~A~G~~s~vr~~l~~~~~l~~~~~~~~~~~~~g~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~g~~~~ 346 (592)
..+++|+||+|||.+|.+|+++...++.+.. .......++|.. ......... ..+...+.+ ..+.
T Consensus 126 ---~~~~~D~VVgADG~~S~vR~~~~~~~~~~~~-~~~~~~~w~g~~--------~~~~~~~~~--~~~~~~g~~-~~~~ 190 (765)
T PRK08255 126 ---LAADADLVIASDGLNSRIRTRYADTFQPDID-TRRCRFVWLGTH--------KVFDAFTFA--FEETEHGWF-QAHA 190 (765)
T ss_pred ---hhcCCCEEEEcCCCCHHHHHHHHhhcCCcee-cCCCceEEecCC--------CcccceeEE--EEecCCceE-EEEE
Confidence 1247899999999999999987655554320 000011111110 000000000 000111100 1223
Q ss_pred EEcCCCeEEEEEEeccc-CC---CCCCCcHHHHHH----hhc-CccccccccCCce---eeecceeeecCCccccCcccC
Q 007716 347 YHMNDRQIALGLVVALN-YH---NPFLNPYEEFQK----FKH-HPAIKPLLEGGTV---VQYGARTLNEGGLQSIPYPVF 414 (592)
Q Consensus 347 ~~~~~~~~~vg~~~~~~-~~---~~~~~~~~~~~~----~~~-~p~i~~~l~~~~~---~~~~~~~i~~gg~~~~p~~~~ 414 (592)
|+..++...+-+....+ +. .+..+..+..+. |.. .+. .+++..... ..| ..+ .....++|+.
T Consensus 191 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~~-~~li~~~~~~~~~~w--~~~---~~~~~~~w~~ 264 (765)
T PRK08255 191 YRFDDDTSTFIVETPEEVWRAAGLDEMSQEESIAFCEKLFADYLDG-HPLMSNASHLRGSAW--INF---PRVVCERWVH 264 (765)
T ss_pred eeeCCCCcEEEEEcCHHHHHhcCCccCCHHHHHHHHHHHhHHhcCC-Cccccccccccccee--eec---ceeccCCCcc
Confidence 55544333222222111 10 011122221121 111 111 122221111 001 001 1113468888
Q ss_pred CC----EEEEcCCCcccCCCCccchHHHHHHHHHHHHHHhhhcc-CCchHHHHHHHHHHhHHHHHHHHHHcchhhh
Q 007716 415 PG----GAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLH-EDSNMEIYWDTLQKSWVWQELQRARNYRPAF 485 (592)
Q Consensus 415 ~~----v~LiGDAA~~~~P~~g~G~~~Am~dg~~aA~~l~~~~~-~~~~l~~Y~~~~~~~~~~~~l~~~r~~~~~~ 485 (592)
++ ++|+|||||.++|..|||+++||+||..||++|..... ...+|+.|++.|+.+ +.+.++.++....++
T Consensus 265 gr~~~~v~liGDAAH~~~P~~GqG~~~aieDa~~La~~L~~~~~~~~~al~~ye~~R~~r-~~~~~~~s~~~~~~~ 339 (765)
T PRK08255 265 WNRRVPVVLMGDAAHTAHFSIGSGTKLALEDAIELARCLHEHPGDLPAALAAYEEERRVE-VLRIQNAARNSTEWF 339 (765)
T ss_pred CCCcccEEEEEcCcccCCCCcchhHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHH-HHHHHHHHHHhCcee
Confidence 88 99999999999999999999999999999999987532 246899999999976 888888888666555
No 58
>PLN02463 lycopene beta cyclase
Probab=99.88 E-value=4.9e-20 Score=197.68 Aligned_cols=292 Identities=18% Similarity=0.204 Sum_probs=169.4
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCc
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDK 185 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~ 185 (592)
..+||+||||||||+++|+.|++. |++|+|||+.+..... +..++-...++++ .... .+........
T Consensus 27 ~~~DVvIVGaGpAGLalA~~La~~------Gl~V~liE~~~~~~~p--~~~g~w~~~l~~l----gl~~-~l~~~w~~~~ 93 (447)
T PLN02463 27 RVVDLVVVGGGPAGLAVAQQVSEA------GLSVCCIDPSPLSIWP--NNYGVWVDEFEAL----GLLD-CLDTTWPGAV 93 (447)
T ss_pred cCceEEEECCCHHHHHHHHHHHHC------CCeEEEeccCccchhc--cccchHHHHHHHC----CcHH-HHHhhCCCcE
Confidence 359999999999999999999998 9999999997643221 1111111111111 0000 0000011111
Q ss_pred EEEeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccc
Q 007716 186 FWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKEN 265 (592)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~ 265 (592)
+ +......... ......++|..|.+.|.+++.+.||+++ ..+|+++..++++ +.|++.+
T Consensus 94 v-~~~~~~~~~~-----~~~y~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~--~~V~~~d------------ 152 (447)
T PLN02463 94 V-YIDDGKKKDL-----DRPYGRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEESK--SLVVCDD------------ 152 (447)
T ss_pred E-EEeCCCCccc-----cCcceeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCe--EEEEECC------------
Confidence 1 1111111111 1223458999999999999999999997 4689998877643 3577765
Q ss_pred cccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeeEEEEEeecCCCCCCCcEEEEeccC----------
Q 007716 266 FQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWP---------- 335 (592)
Q Consensus 266 f~~g~~i~a~~vI~A~G~~s~vr~~l~~~~~l~~~~~~~~~~~~~g~~~~~~i~~~~~~~g~~~~~~~~~---------- 335 (592)
|.+++||+||+|+|.+|.+.+. ... .........|+. .++......++. ...+.|-
T Consensus 153 ---G~~i~A~lVI~AdG~~s~l~~~-----~~~---~~~g~Q~a~Gi~--~ev~~~p~d~~~-~vlMD~r~~~~~~~~~~ 218 (447)
T PLN02463 153 ---GVKIQASLVLDATGFSRCLVQY-----DKP---FNPGYQVAYGIL--AEVDSHPFDLDK-MLFMDWRDSHLGNNPEL 218 (447)
T ss_pred ---CCEEEcCEEEECcCCCcCccCC-----CCC---CCccceeeeeEE--eecCCCCccccc-chhhhcChhhccccchh
Confidence 5789999999999999876431 111 001111223322 233222122221 1111111
Q ss_pred --CCCCCcceEEEEEcCCCeEEEEEEecccCCCCCCCcHHHHH----HhhcCccccccccCCceeeecceeeecCCcccc
Q 007716 336 --LDQKTYGGSFLYHMNDRQIALGLVVALNYHNPFLNPYEEFQ----KFKHHPAIKPLLEGGTVVQYGARTLNEGGLQSI 409 (592)
Q Consensus 336 --~~~~~~g~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~~~~~----~~~~~p~i~~~l~~~~~~~~~~~~i~~gg~~~~ 409 (592)
.+....+..|++|.+++.+.++...-. ..+.+ +.+.++ ++..+.. ++..+..+.....||.++..
T Consensus 219 ~~~~~~~p~FlY~~P~~~~~~~vEeT~l~--s~~~~-~~~~lk~~L~~~l~~~G----i~~~~i~~~E~~~IPmg~~~-- 289 (447)
T PLN02463 219 RARNSKLPTFLYAMPFSSNRIFLEETSLV--ARPGL-PMDDIQERMVARLRHLG----IKVKSVEEDEKCVIPMGGPL-- 289 (447)
T ss_pred hhccCCCCceEEEEecCCCeEEEEeeeee--cCCCC-CHHHHHHHHHHHHHHCC----CCcceeeeeeeeEeeCCCCC--
Confidence 011112347899999988877654211 11222 222222 2211111 11223333334457777653
Q ss_pred CcccCCCEEEEcCCCcccCCCCccchHHHHHHHHHHHHHHhhhccC
Q 007716 410 PYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE 455 (592)
Q Consensus 410 p~~~~~~v~LiGDAA~~~~P~~g~G~~~Am~dg~~aA~~l~~~~~~ 455 (592)
|. ..+++++|||||++++|.+|.|+..+|..|..+|++|.++++.
T Consensus 290 ~~-~~~~~~~~G~aag~v~p~tG~~i~~~~~~~~~~a~~~~~~~~~ 334 (447)
T PLN02463 290 PV-IPQRVLGIGGTAGMVHPSTGYMVARTLAAAPIVADAIVEYLGS 334 (447)
T ss_pred CC-CCCCEEEecchhcCcCCCccccHHHHHHHHHHHHHHHHHHHhc
Confidence 32 3569999999999999999999999999999999999999865
No 59
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=99.86 E-value=2.2e-20 Score=201.52 Aligned_cols=222 Identities=17% Similarity=0.194 Sum_probs=134.4
Q ss_pred CcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCC
Q 007716 205 GNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCR 284 (592)
Q Consensus 205 ~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~ 284 (592)
-.|.++|..+.+.|.+.|++.||+++.++ |+++..+++|.|.+|++.+ |.+++||++|+|+|.+
T Consensus 147 ~ayhlDR~~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~---------------g~~i~ad~~IDASG~~ 210 (454)
T PF04820_consen 147 YAYHLDRAKFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDD---------------GRTIEADFFIDASGRR 210 (454)
T ss_dssp -EEEEEHHHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETT---------------SEEEEESEEEE-SGGG
T ss_pred eeEEEeHHHHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECC---------------CCEEEEeEEEECCCcc
Confidence 37899999999999999999999999985 8888888888888999876 6899999999999999
Q ss_pred CcchHHHHHHcCCCcccccCcccceeeEEEEEeecCCC-CCCCcEEEEeccCCCCCCcceEEEEEcCCCeEEEEEEeccc
Q 007716 285 GSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGK-HNPGEILHTLGWPLDQKTYGGSFLYHMNDRQIALGLVVALN 363 (592)
Q Consensus 285 s~vr~~l~~~~~l~~~~~~~~~~~~~g~~~~~~i~~~~-~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~vg~~~~~~ 363 (592)
+.+.++. ++... ................++... ..+-+..+.+ ..|..|.+|+.++..+ |++...+
T Consensus 211 s~L~~~~---L~~~~--~~~~~~L~~d~av~~~~~~~~~~~~~T~~~a~-------~~GW~W~IPL~~~~~~-G~V~s~~ 277 (454)
T PF04820_consen 211 SLLARKA---LKVGF--RDWSDWLPNDRAVAVQVPNEDPPEPYTRSTAF-------EAGWIWYIPLQNRRGS-GYVYSSD 277 (454)
T ss_dssp -CCCCCC---T-EEE--EEETTTCEEEEEEEEEEE-SSCTTSSEEEEEE-------SSEEEEEEEESSEEEE-EEEEETT
T ss_pred chhhHhh---hcCCC--ccccccccccEEEEEecCcCCCCCCceeEEec-------CCceEEEccCCCcceE-EEEeccc
Confidence 8876642 11111 000011100000111233222 2232333322 2366799999886555 8887554
Q ss_pred CCCCCCCcHHHHHHhhcC-ccccccccCCceeeecceeeecCCccccCcccCCCEEEEcCCCcccCCCCccchHHHHHHH
Q 007716 364 YHNPFLNPYEEFQKFKHH-PAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSG 442 (592)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~-p~i~~~l~~~~~~~~~~~~i~~gg~~~~p~~~~~~v~LiGDAA~~~~P~~g~G~~~Am~dg 442 (592)
+. ++.+.++.+..+ +....... ..+.. ..+ . ..+...+|+++|||||++++|+.+.|+++|+..+
T Consensus 278 ~~----s~~~A~~~l~~~l~~~~~~~~--~~i~~-----~~g-~--~~~~~~~n~vavGdAAgFiDPL~StGI~la~~aa 343 (454)
T PF04820_consen 278 FI----SDDEAEAELLAYLGGSPEAEP--RHIRF-----RSG-R--RKQFWGKNCVAVGDAAGFIDPLESTGIHLALSAA 343 (454)
T ss_dssp TS----HHHHHHHHHHHHHTCHCTTSC--EEEE------S-E-E--ESSSEETTEEE-CCCTEE--GGGSHHHHHHHHHH
T ss_pred cC----CHHHHHHHHHHhcchhhhcch--hhhcc-----ccc-c--hhhcccCCEEEEcchhhccCccccccHHHHHHHH
Confidence 33 344444444321 11101100 12221 111 1 2456678999999999999999999999999988
Q ss_pred HHHHHHHhhhccCCchHHHHHHHHHHh
Q 007716 443 MLAAEAGFGVLHEDSNMEIYWDTLQKS 469 (592)
Q Consensus 443 ~~aA~~l~~~~~~~~~l~~Y~~~~~~~ 469 (592)
..+++.|.........++.|++.++..
T Consensus 344 ~~l~~~l~~~~~~~~~~~~Yn~~~~~~ 370 (454)
T PF04820_consen 344 EALAEALPDDDFSPAALDRYNRRMRRE 370 (454)
T ss_dssp HHHHHTHHCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHhcccCCCCHHHHHHHHHHHHHH
Confidence 888777766543345688888877653
No 60
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=99.85 E-value=5.8e-20 Score=182.81 Aligned_cols=303 Identities=22% Similarity=0.299 Sum_probs=183.0
Q ss_pred ccccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCe---eee
Q 007716 104 ESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPI---RVP 180 (592)
Q Consensus 104 ~~~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~---~~~ 180 (592)
.+..+||+|||||.+|.++|+.|+|. |.+|.||||.-.-..+ .-|..++|.+...|.. .+..++.. ...
T Consensus 42 ~~~~~DvIIVGAGV~GsaLa~~L~kd------GRrVhVIERDl~EPdR-ivGEllQPGG~~~L~~-LGl~Dcve~IDAQ~ 113 (509)
T KOG1298|consen 42 NDGAADVIIVGAGVAGSALAYALAKD------GRRVHVIERDLSEPDR-IVGELLQPGGYLALSK-LGLEDCVEGIDAQR 113 (509)
T ss_pred cCCcccEEEECCcchHHHHHHHHhhC------CcEEEEEecccccchH-HHHHhcCcchhHHHHH-hCHHHHhhcccceE
Confidence 44579999999999999999999999 9999999987543332 3466777765433321 11111111 111
Q ss_pred ccCCcEEEeecCCcccCCCCCCCC----CcEEEcHHHHHHHHHHHHHHc-CCEEecCceEEEEEEcCCCcEEEEEeccCc
Q 007716 181 VSSDKFWFLTKDRAFSLPSPFSNR----GNYVISLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMG 255 (592)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~l~~~L~~~a~~~-Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g 255 (592)
+. ++..+.++...++|.+..+. .+-.++-+++.+.|++.|... +|++..|+ |.++.+++ |.|.||++.+
T Consensus 114 v~--Gy~ifk~gk~v~~pyP~~~f~~d~~GrsFhnGRFvq~lR~ka~slpNV~~eeGt-V~sLlee~-gvvkGV~yk~-- 187 (509)
T KOG1298|consen 114 VT--GYAIFKDGKEVDLPYPLKNFPSDPSGRSFHNGRFVQRLRKKAASLPNVRLEEGT-VKSLLEEE-GVVKGVTYKN-- 187 (509)
T ss_pred ee--eeEEEeCCceeeccCCCcCCCCCcccceeeccHHHHHHHHHHhcCCCeEEeeee-HHHHHhcc-CeEEeEEEec--
Confidence 22 22333345555555554332 244466789999999998775 69988775 77777776 7899999987
Q ss_pred ccCCCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeeEEEEEeecCCCCCCCcEEEEeccC
Q 007716 256 IAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWP 335 (592)
Q Consensus 256 ~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~vr~~l~~~~~l~~~~~~~~~~~~~g~~~~~~i~~~~~~~g~~~~~~~~~ 335 (592)
+.|++ .+..|.++|+|||+.|.+||.|.+. . ......+-+|+.. + ......++.....++-|
T Consensus 188 --k~gee-------~~~~ApLTvVCDGcfSnlRrsL~~~---~---v~~V~S~fVG~vl--~-N~~l~~p~hghvIL~~p 249 (509)
T KOG1298|consen 188 --KEGEE-------VEAFAPLTVVCDGCFSNLRRSLCDP---K---VEEVPSYFVGLVL--K-NCRLPAPNHGHVILSKP 249 (509)
T ss_pred --CCCce-------EEEecceEEEecchhHHHHHHhcCC---c---ccccchheeeeee--c-CCCCCCCCcceEEecCC
Confidence 56653 7889999999999999999988421 1 1112233344421 1 11111222211122222
Q ss_pred CCCCCcceEEEEEcCCCeEEEEEEecccCCCCCCCcHHHHHHh-hc--CccccccccCCceeeecceeeecCCccccC--
Q 007716 336 LDQKTYGGSFLYHMNDRQIALGLVVALNYHNPFLNPYEEFQKF-KH--HPAIKPLLEGGTVVQYGARTLNEGGLQSIP-- 410 (592)
Q Consensus 336 ~~~~~~g~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~~~~~~~-~~--~p~i~~~l~~~~~~~~~~~~i~~gg~~~~p-- 410 (592)
.-..+|+.....+.+.+-+..+ .-|....- |+..| ++ .|.+-+.+...-. .++.+|.++++|
T Consensus 250 ------spil~Y~ISStEvRcl~~v~g~-~~Psi~~g-em~~~mk~~v~PqiP~~lR~~F~-----~av~~g~irsmpn~ 316 (509)
T KOG1298|consen 250 ------SPILVYQISSTEVRCLVDVPGQ-KLPSIANG-EMATYMKESVAPQIPEKLRESFL-----EAVDEGNIRSMPNS 316 (509)
T ss_pred ------CcEEEEEecchheEEEEecCcc-cCCcccch-hHHHHHHHhhCcCCCHHHHHHHH-----HHhhccchhcCccc
Confidence 1256888877777776555432 11222221 22333 22 2443332221000 112222233222
Q ss_pred -----cccCCCEEEEcCCCcccCCCCccchHHHHHHHHHHHHHHhh
Q 007716 411 -----YPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFG 451 (592)
Q Consensus 411 -----~~~~~~v~LiGDAA~~~~P~~g~G~~~Am~dg~~aA~~l~~ 451 (592)
....+|++++|||..+-+|++|.||.-|+.|..++-+.|..
T Consensus 317 ~mpa~~~~~~G~illGDAfNMRHPltggGMtV~l~Di~lLr~ll~p 362 (509)
T KOG1298|consen 317 SMPATLNDKKGVILLGDAFNMRHPLTGGGMTVALSDIVLLRRLLKP 362 (509)
T ss_pred cCCCCcCCCCceEEEcccccccCCccCCceEeehhHHHHHHHHhcc
Confidence 22346999999999999999999999999999999988765
No 61
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=99.79 E-value=5.8e-17 Score=170.88 Aligned_cols=295 Identities=19% Similarity=0.177 Sum_probs=156.9
Q ss_pred cEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCc-ccccCccChHHHHHhhHhhhhcCCCeeeeccCCcEE
Q 007716 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAH-IISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (592)
Q Consensus 109 DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~-~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~~ 187 (592)
||+|||||+||+++|+.|++. .+|++|+|+|+.+..++. ..+ +-...+.+....|-. ..+...... ..
T Consensus 1 DviIvGaG~AGl~lA~~L~~~----~~g~~V~lle~~~~~~~~~tw~---~~~~~~~~~~~~~~~--~~v~~~W~~--~~ 69 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRA----RPDFRIRVIEAGRTIGGNHTWS---FFDSDLSDAQHAWLA--DLVQTDWPG--YE 69 (370)
T ss_pred CEEEECccHHHHHHHHHHHhc----CCCCeEEEEeCCCCCCCcccce---ecccccchhhhhhhh--hhheEeCCC--CE
Confidence 899999999999999999974 249999999998766542 111 111111111100000 000111111 11
Q ss_pred EeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccc
Q 007716 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (592)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~ 267 (592)
+........+. ...+.+++.+|.+.|.+.+.. .|+.+..|+++ ++++ |++.+
T Consensus 70 v~~~~~~~~l~-----~~Y~~I~r~~f~~~l~~~l~~---~i~~~~~V~~v--~~~~----v~l~d-------------- 121 (370)
T TIGR01789 70 VRFPKYRRKLK-----TAYRSMTSTRFHEGLLQAFPE---GVILGRKAVGL--DADG----VDLAP-------------- 121 (370)
T ss_pred EECcchhhhcC-----CCceEEEHHHHHHHHHHhhcc---cEEecCEEEEE--eCCE----EEECC--------------
Confidence 11111111111 234678999999999876533 37778899887 3322 44444
Q ss_pred cceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeeEEEEEeecCCCCCCCc-EEEEeccCCCCCCcceEEE
Q 007716 268 RGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGE-ILHTLGWPLDQKTYGGSFL 346 (592)
Q Consensus 268 ~g~~i~a~~vI~A~G~~s~vr~~l~~~~~l~~~~~~~~~~~~~g~~~~~~i~~~~~~~g~-~~~~~~~~~~~~~~g~~~~ 346 (592)
|.+++|++||+|+|.+|.-... .-.+...|+. |+.... +.++. +.+-+.++... |..|+
T Consensus 122 -g~~~~A~~VI~A~G~~s~~~~~-------------~~~Q~f~G~~--~r~~~p-~~~~~~~lMD~~~~q~~---g~~F~ 181 (370)
T TIGR01789 122 -GTRINARSVIDCRGFKPSAHLK-------------GGFQVFLGRE--MRLQEP-HGLENPIIMDATVDQLA---GYRFV 181 (370)
T ss_pred -CCEEEeeEEEECCCCCCCcccc-------------ceeeEEEEEE--EEEcCC-CCCCccEEEeeeccCCC---CceEE
Confidence 6789999999999988741110 1112233432 444433 44432 33333343222 33454
Q ss_pred E--EcCCCeEEEEEEecccCCC-CCCCcHHHHHHhhcCccccccccCCceeeecceeeecCC-ccccCcc-cCCCEEEEc
Q 007716 347 Y--HMNDRQIALGLVVALNYHN-PFLNPYEEFQKFKHHPAIKPLLEGGTVVQYGARTLNEGG-LQSIPYP-VFPGGAIIG 421 (592)
Q Consensus 347 ~--~~~~~~~~vg~~~~~~~~~-~~~~~~~~~~~~~~~p~i~~~l~~~~~~~~~~~~i~~gg-~~~~p~~-~~~~v~LiG 421 (592)
| |..++.+.|.... +.+ +.++....-++++.... ..-+...+.+......+|... ....+.| ..++++++|
T Consensus 182 Y~lP~~~~~~lvE~T~---~s~~~~l~~~~l~~~l~~~~~-~~g~~~~~i~~~e~g~iPm~~~~~~~~~~~~~~~v~~iG 257 (370)
T TIGR01789 182 YVLPLGSHDLLIEDTY---YADDPLLDRNALSQRIDQYAR-ANGWQNGTPVRHEQGVLPVLLGGDFSAYQDEVRIVAIAG 257 (370)
T ss_pred EECcCCCCeEEEEEEe---ccCCCCCCHHHHHHHHHHHHH-HhCCCceEEEEeeeeEEeeecCCCcccccccCCceeeee
Confidence 4 7788888775332 223 33443332222221100 001111222222222444311 0000112 245699999
Q ss_pred CCCcccCCCCccchHHHHHHHHHHHHHHh-hhccCCchHHHHHHHH
Q 007716 422 CAAGFLNVPKIKGTHTAMKSGMLAAEAGF-GVLHEDSNMEIYWDTL 466 (592)
Q Consensus 422 DAA~~~~P~~g~G~~~Am~dg~~aA~~l~-~~~~~~~~l~~Y~~~~ 466 (592)
||||.++|.+|+|++.|++++..+|+.+. ........+..|...+
T Consensus 258 ~AAg~~~P~tGyg~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~ 303 (370)
T TIGR01789 258 LRAGLTHPTTGYSLPVAVENADALAAQPDLSSEQLAAFIDSRARRH 303 (370)
T ss_pred cccccccccccccHHHHHHHHHHHHhccCcCccchhhhhhHHHHHH
Confidence 99999999999999999999999998875 2111123356666553
No 62
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.78 E-value=8.8e-17 Score=170.09 Aligned_cols=278 Identities=20% Similarity=0.216 Sum_probs=161.6
Q ss_pred cEEEECCCHHHHHHHHHH--HHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHH---HHHhhH-hhhhcCCCeeeecc
Q 007716 109 DVVIVGAGPAGLSAAIRL--KQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRA---LNELLP-QWKQEEAPIRVPVS 182 (592)
Q Consensus 109 DVvIVGaG~aGl~aA~~L--a~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~---l~~ll~-~~~~~~~~~~~~~~ 182 (592)
|||||||||||+++|.+| ++. |++|+|||+....+...-...++.... +++++. .|.
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~------g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~----------- 63 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARP------GLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWS----------- 63 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCC------CCEEEEEcCCccccccCCcccccccccccchHHHHheecC-----------
Confidence 899999999999999999 555 999999999887622111122221111 222211 121
Q ss_pred CCcEEEeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCc
Q 007716 183 SDKFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSK 262 (592)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~ 262 (592)
...+........... .....|++..|.+.|.++++ .+..++.+..|++|..++++ +.|++.+
T Consensus 64 --~~~v~~~~~~~~~~~----~~Y~~i~~~~f~~~l~~~~~-~~~~~~~~~~V~~i~~~~~~--~~v~~~~--------- 125 (374)
T PF05834_consen 64 --GWRVYFPDGSRILID----YPYCMIDRADFYEFLLERAA-AGGVIRLNARVTSIEETGDG--VLVVLAD--------- 125 (374)
T ss_pred --ceEEEeCCCceEEcc----cceEEEEHHHHHHHHHHHhh-hCCeEEEccEEEEEEecCce--EEEEECC---------
Confidence 111111111111111 23457999999999999999 44456778899999887742 3466665
Q ss_pred ccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeeEEEEEeecCCCCCCCcEEEEeccCCCCC--C
Q 007716 263 KENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQK--T 340 (592)
Q Consensus 263 ~~~f~~g~~i~a~~vI~A~G~~s~vr~~l~~~~~l~~~~~~~~~~~~~g~~~~~~i~~~~~~~g~~~~~~~~~~~~~--~ 340 (592)
|.+++|++||+|+|..+...+. ...+...|+. +++....+.++. ...+.|-..+. .
T Consensus 126 ------g~~i~a~~VvDa~g~~~~~~~~-------------~~~Q~f~G~~--v~~~~~~f~~~~-~~lMD~r~~~~~~~ 183 (374)
T PF05834_consen 126 ------GRTIRARVVVDARGPSSPKARP-------------LGLQHFYGWE--VETDEPVFDPDT-ATLMDFRVPQSADG 183 (374)
T ss_pred ------CCEEEeeEEEECCCcccccccc-------------cccceeEEEE--EeccCCCCCCCc-eEEEEecccCCCCC
Confidence 6799999999999966542111 1112233432 233333233332 33334433332 3
Q ss_pred cceEEEEEcCCCeEEEEEEecccCCCCCCCcHHHHH-HhhcCcccc-ccccCCceeeecceeeec--CCccccCcccCCC
Q 007716 341 YGGSFLYHMNDRQIALGLVVALNYHNPFLNPYEEFQ-KFKHHPAIK-PLLEGGTVVQYGARTLNE--GGLQSIPYPVFPG 416 (592)
Q Consensus 341 ~g~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~~~~~-~~~~~p~i~-~~l~~~~~~~~~~~~i~~--gg~~~~p~~~~~~ 416 (592)
....|++|..++.+.|....-.. .+.+. .++++ ++.. .++ .-+...+.++.....||. ++. ++...++
T Consensus 184 ~~F~Y~lP~~~~~alvE~T~fs~--~~~~~-~~~~~~~l~~--~l~~~g~~~~~i~~~E~G~IPm~~~~~---~~~~~~~ 255 (374)
T PF05834_consen 184 PSFLYVLPFSEDRALVEETSFSP--RPALP-EEELKARLRR--YLERLGIDDYEILEEERGVIPMTTGGF---PPRFGQR 255 (374)
T ss_pred ceEEEEEEcCCCeEEEEEEEEcC--CCCCC-HHHHHHHHHH--HHHHcCCCceeEEEeecceeecccCCC---ccccCCC
Confidence 34467778888888886554221 12122 22222 2211 111 111222333322233555 222 2444568
Q ss_pred EEEEcCCCcccCCCCccchHHHHHHHHHHHHHHhh
Q 007716 417 GAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFG 451 (592)
Q Consensus 417 v~LiGDAA~~~~P~~g~G~~~Am~dg~~aA~~l~~ 451 (592)
++.+|+|+|.++|.+|.++..+++.+..+|+++.+
T Consensus 256 v~~iG~agG~v~PsTGYs~~~~~~~a~~ia~~l~~ 290 (374)
T PF05834_consen 256 VIRIGTAGGMVKPSTGYSFARIQRQADAIADALAK 290 (374)
T ss_pred eeeEEccccCCCCcccHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999998888888876
No 63
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=99.72 E-value=4e-16 Score=157.33 Aligned_cols=332 Identities=17% Similarity=0.159 Sum_probs=178.1
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCC--CCCCCccccc------CccChHH--HHHhhHhhhhcCC
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKG--AEVGAHIISG------NVFEPRA--LNELLPQWKQEEA 175 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~--~~~g~~~~~g------~~i~~~~--l~~ll~~~~~~~~ 175 (592)
..||||||||||+|+++|..|... +.....||.++|-+ +..+.-..+. -.+.+.. +-+.+..|.....
T Consensus 35 ~~~dVvIvGgGpvg~aLAa~l~sn--p~~~~~kv~Lld~~~s~kl~~~~~~~~f~Nrvss~s~~s~~~fk~~~awd~i~~ 112 (481)
T KOG3855|consen 35 AKYDVVIVGGGPVGLALAAALGSN--PPFQDKKVLLLDAGDSPKLGDFKPSETFSNRVSSISPASISLFKSIGAWDHIFH 112 (481)
T ss_pred ccCCEEEECCchHHHHHHHHhccC--CccchheeeEEecccCccccccccCccccceeecCCcchHHHHHhcCHHHHhhh
Confidence 479999999999999999999843 55557899999987 3333211110 1122332 2233445554322
Q ss_pred CeeeeccCCcEEEeecCCcccCCCC-CCCCCcEEEcHHHHHHHHHH-HH--HHcCCEEecCceEEEEEE------cCCCc
Q 007716 176 PIRVPVSSDKFWFLTKDRAFSLPSP-FSNRGNYVISLSQLVRWLGG-KA--EELGVEIYPGFAASEILY------DADNK 245 (592)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~l~~~L~~-~a--~~~Gv~i~~g~~v~~i~~------~~~g~ 245 (592)
.....+.....+-......+.+... +...-.|++.-..+...|.. ++ +..+|+|....++.++.. ++++.
T Consensus 113 ~R~~~~~~~~v~Ds~s~a~I~~~~d~~~~d~a~iien~nIq~sL~~s~~~s~~~nv~vi~~~k~~~~~~~~~l~~~~n~~ 192 (481)
T KOG3855|consen 113 DRYQKFSRMLVWDSCSAALILFDHDNVGIDMAFIIENDNIQCSLYNSQLDSESDNVTVINMAKVIDCTIPEYLIKNDNGM 192 (481)
T ss_pred hccccccceeeecccchhhhhhccccccccceeeeehhHHHHHHHHHHHhhhcCceeeecccceeeeccccccCCCCCcc
Confidence 1112222111111112222222211 11112577777777777763 33 234699999999887754 34456
Q ss_pred EEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeeEEEEEeecCCCCCC
Q 007716 246 VIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNP 325 (592)
Q Consensus 246 v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~vr~~l~~~~~l~~~~~~~~~~~~~g~~~~~~i~~~~~~~ 325 (592)
+..+.+.| |..+..|++|+|||.+|.+|+.. +++. ....+.. .|+.....+..+...+
T Consensus 193 ~~~i~l~d---------------g~~~~~~LLigAdg~Ns~vR~~s----nid~-~~~ny~~--havVAtl~l~~~~~~~ 250 (481)
T KOG3855|consen 193 WFHITLTD---------------GINFATDLLIGADGFNSVVRKAS----NIDV-ASWNYDQ--HAVVATLKLEEEAILN 250 (481)
T ss_pred eEEEEecc---------------Cceeeeceeeccccccchhhhhc----CCCc-ccccccc--eeeeEEEEeccccccc
Confidence 66677766 78999999999999999998854 5553 1111222 2333233444332233
Q ss_pred CcEEEEeccCCCCCCcceEEEEEcCCCeEEEEEEecccCCCCC-CCcHHHHHHh------hcCcccc-------------
Q 007716 326 GEILHTLGWPLDQKTYGGSFLYHMNDRQIALGLVVALNYHNPF-LNPYEEFQKF------KHHPAIK------------- 385 (592)
Q Consensus 326 g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~vg~~~~~~~~~~~-~~~~~~~~~~------~~~p~i~------------- 385 (592)
+..++-| + ..|..-+.|..++..++.+.......... .-|.+.|-.+ .+.|.+.
T Consensus 251 ~~AwQRF--l----P~GpiAllpl~d~~s~LvWSts~~~a~~L~~lp~e~fv~~lNsaf~~q~~~~~~~~~~~~al~~~~ 324 (481)
T KOG3855|consen 251 GVAWQRF--L----PTGPIALLPLSDTLSSLVWSTSPENASILKSLPEERFVDLLNSAFSSQNPRAAYSDDADFALNGRA 324 (481)
T ss_pred chhHHhc--C----CCCceeecccccccccceeecCHHHHHHHhcCCchhHHHHHHHHHhccCCCchhhhchhhhhcchh
Confidence 3222222 1 11334456666655554443321100000 0000111000 0000000
Q ss_pred ----cccc---CCceeeeccee---------eecCCccccCcccCCCEEEEcCCCcccCCCCccchHHHHHHHHHHHHHH
Q 007716 386 ----PLLE---GGTVVQYGART---------LNEGGLQSIPYPVFPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAG 449 (592)
Q Consensus 386 ----~~l~---~~~~~~~~~~~---------i~~gg~~~~p~~~~~~v~LiGDAA~~~~P~~g~G~~~Am~dg~~aA~~l 449 (592)
.++. ....+.+..++ .-..|+.....+..+|+.|||||||.++|..|||.|++..|...|.+.+
T Consensus 325 ~~~~sl~~~~k~~~~~q~pp~V~~v~dksRa~FPLgf~ha~~yV~~~~Al~GDAAHr~hPlAgqGvNlg~~dV~~L~~sL 404 (481)
T KOG3855|consen 325 QLSESLLNTSKRLANQQYPPSVFEVGDKSRAQFPLGFGHADEYVTDRVALIGDAAHRVHPLAGQGVNLGFSDVKILVDSL 404 (481)
T ss_pred hccHHHHhccCcccccccCCeEEEecccceeecccccccHHHhcCCchhhhcchhhccccCcccccCCChhhHHHHHHHH
Confidence 0000 00000111111 1113333444677899999999999999999999999999999999999
Q ss_pred hhhccCC------chHHHHHHHHH
Q 007716 450 FGVLHED------SNMEIYWDTLQ 467 (592)
Q Consensus 450 ~~~~~~~------~~l~~Y~~~~~ 467 (592)
.+++..+ .-|+.|+..+.
T Consensus 405 ~~ai~~g~DlgS~~~L~~y~~~~~ 428 (481)
T KOG3855|consen 405 SEAIVSGLDLGSVEHLEPYERERL 428 (481)
T ss_pred HHHHHhcccccchhhhhHHHHHHh
Confidence 8877552 45677776554
No 64
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.71 E-value=2.9e-16 Score=156.83 Aligned_cols=157 Identities=24% Similarity=0.378 Sum_probs=112.8
Q ss_pred ccccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChH-HH----HHhhHhhhhcCCCee
Q 007716 104 ESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPR-AL----NELLPQWKQEEAPIR 178 (592)
Q Consensus 104 ~~~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~-~l----~~ll~~~~~~~~~~~ 178 (592)
+..++||+||||||||++||+.|++. |++|+|+||...+|+....|+.+.++ .+ .+++..+ +.+.
T Consensus 22 ~~~~~DVvIVGgGpAGl~AA~~la~~------G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~---gv~~- 91 (257)
T PRK04176 22 DYLEVDVAIVGAGPSGLTAAYYLAKA------GLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEF---GIRY- 91 (257)
T ss_pred HhccCCEEEECccHHHHHHHHHHHhC------CCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHC---CCCc-
Confidence 34679999999999999999999998 99999999998887765544432221 11 1122211 1111
Q ss_pred eeccCCcEEEeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccC
Q 007716 179 VPVSSDKFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAK 258 (592)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~ 258 (592)
.....+.|.+++..+...|.+++++.|++|++++.|+++..++++.+.+|.+.+..+..
T Consensus 92 ---------------------~~~~~g~~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~ 150 (257)
T PRK04176 92 ---------------------KEVEDGLYVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEM 150 (257)
T ss_pred ---------------------eeecCcceeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccc
Confidence 01112356788899999999999999999999999999988765578888876532222
Q ss_pred CCCcccccccceEEEcCEEEEecCCCCcchHHHHHHc
Q 007716 259 DGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNF 295 (592)
Q Consensus 259 ~G~~~~~f~~g~~i~a~~vI~A~G~~s~vr~~l~~~~ 295 (592)
+|..+ +..+++||+||+|+|.++.+.+.+.++.
T Consensus 151 ~g~~~----~~~~i~Ak~VI~ATG~~a~v~~~l~~~~ 183 (257)
T PRK04176 151 AGLHV----DPLTIEAKAVVDATGHDAEVVSVLARKG 183 (257)
T ss_pred cCCCC----CcEEEEcCEEEEEeCCCcHHHHHHHHHc
Confidence 23110 1368999999999999999998886543
No 65
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.70 E-value=4.5e-16 Score=154.90 Aligned_cols=159 Identities=26% Similarity=0.397 Sum_probs=115.5
Q ss_pred cccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHH-----HHHhhHhhhhcCCCeee
Q 007716 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRA-----LNELLPQWKQEEAPIRV 179 (592)
Q Consensus 105 ~~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~-----l~~ll~~~~~~~~~~~~ 179 (592)
..++||+||||||+||++|+.|++. |++|+|+||...+|+....++.+.+.. ..+++.++ +
T Consensus 19 ~~~~DVvIVGgGpAGL~aA~~la~~------G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~---g----- 84 (254)
T TIGR00292 19 YAESDVIIVGAGPSGLTAAYYLAKN------GLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEF---G----- 84 (254)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHC------CCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHC---C-----
Confidence 3579999999999999999999999 999999999998887665554332211 01111111 1
Q ss_pred eccCCcEEEeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCC-cEEEEEeccCcccC
Q 007716 180 PVSSDKFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADN-KVIGIGTNDMGIAK 258 (592)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g-~v~~V~~~d~g~~~ 258 (592)
++......+.+..++..+.+.|.+++.+.|+++++++.|.++..++++ ++.||.++...+..
T Consensus 85 -----------------i~~~~~~~g~~~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~ 147 (254)
T TIGR00292 85 -----------------IRYEDEGDGYVVADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIEL 147 (254)
T ss_pred -----------------CCeeeccCceEEeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccc
Confidence 111111122455688899999999999999999999999999887643 68898886543333
Q ss_pred CCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCC
Q 007716 259 DGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLR 298 (592)
Q Consensus 259 ~G~~~~~f~~g~~i~a~~vI~A~G~~s~vr~~l~~~~~l~ 298 (592)
+|... +..+++|++||+|||..+.+.+.+.+++++.
T Consensus 148 ~g~~~----d~~~i~Ak~VVdATG~~a~v~~~l~~~~~~~ 183 (254)
T TIGR00292 148 AGLHV----DPLTQRSRVVVDATGHDAEIVAVCAKKIVLE 183 (254)
T ss_pred cCCCC----CCEEEEcCEEEEeecCCchHHHHHHHHcCcc
Confidence 33210 1368999999999999999999888777655
No 66
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.66 E-value=5.6e-16 Score=145.45 Aligned_cols=157 Identities=27% Similarity=0.425 Sum_probs=107.5
Q ss_pred ccccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHH-----HHHhhHhhhhcCCCee
Q 007716 104 ESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRA-----LNELLPQWKQEEAPIR 178 (592)
Q Consensus 104 ~~~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~-----l~~ll~~~~~~~~~~~ 178 (592)
+..++||+||||||+||+||+.|++. |++|+|+|++..+|+..+.|+.+-++. ..++++++..
T Consensus 14 ~~~~~DV~IVGaGpaGl~aA~~La~~------g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi------ 81 (230)
T PF01946_consen 14 DYLEYDVAIVGAGPAGLTAAYYLAKA------GLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGI------ 81 (230)
T ss_dssp HHTEESEEEE--SHHHHHHHHHHHHH------TS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT-------
T ss_pred hhccCCEEEECCChhHHHHHHHHHHC------CCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCc------
Confidence 34679999999999999999999999 999999999999998777666543221 1123332221
Q ss_pred eeccCCcEEEeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccC
Q 007716 179 VPVSSDKFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAK 258 (592)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~ 258 (592)
+......+.|+.+...+...|...+.+.|++|+..+.|+++...++++|.||.++..-+..
T Consensus 82 -------------------~y~~~~~g~~v~d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~ 142 (230)
T PF01946_consen 82 -------------------PYEEYGDGYYVADSVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEM 142 (230)
T ss_dssp ---------------------EE-SSEEEES-HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHT
T ss_pred -------------------eeEEeCCeEEEEcHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhH
Confidence 1111123356778899999999999999999999999999988876789999887654444
Q ss_pred CCCcccccccceEEEcCEEEEecCCCCcchHHHHHHc
Q 007716 259 DGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNF 295 (592)
Q Consensus 259 ~G~~~~~f~~g~~i~a~~vI~A~G~~s~vr~~l~~~~ 295 (592)
.|-. -|-..++|++||.|||.-+.+.+.+.++.
T Consensus 143 ~glH----vDPl~i~ak~ViDaTGHda~v~~~~~kk~ 175 (230)
T PF01946_consen 143 AGLH----VDPLTIRAKVVIDATGHDAEVVRVLAKKL 175 (230)
T ss_dssp T--T-----B-EEEEESEEEE---SSSSSTSHHHHHH
T ss_pred hhcC----CCcceEEEeEEEeCCCCchHHHHHHHHHh
Confidence 4432 12378999999999999998877666554
No 67
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.64 E-value=3.4e-15 Score=139.07 Aligned_cols=153 Identities=25% Similarity=0.418 Sum_probs=116.8
Q ss_pred cccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHH-----HHHhhHhhhhcCCCeee
Q 007716 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRA-----LNELLPQWKQEEAPIRV 179 (592)
Q Consensus 105 ~~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~-----l~~ll~~~~~~~~~~~~ 179 (592)
..+.||+||||||+||+||+.|++. |++|+|+||+-.+|+..+-|+.+-++. .++++.++.
T Consensus 28 ~~esDViIVGaGPsGLtAAyyLAk~------g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~g-------- 93 (262)
T COG1635 28 YLESDVIIVGAGPSGLTAAYYLAKA------GLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFG-------- 93 (262)
T ss_pred hhhccEEEECcCcchHHHHHHHHhC------CceEEEEEeecccCCcccccccccceeeecchHHHHHHHhC--------
Confidence 3578999999999999999999999 999999999999998887777654332 233443332
Q ss_pred eccCCcEEEeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCC
Q 007716 180 PVSSDKFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKD 259 (592)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~ 259 (592)
++......+-|+.+...+...|...+.+.|++|+.+..|.++...++.+|.||.++..-+...
T Consensus 94 -----------------I~ye~~e~g~~v~ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~ 156 (262)
T COG1635 94 -----------------IRYEEEEDGYYVADSAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMA 156 (262)
T ss_pred -----------------CcceecCCceEEecHHHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhc
Confidence 122222334567788999999999999999999999999999988755788998876444334
Q ss_pred CCcccccccceEEEcCEEEEecCCCCcchHHHH
Q 007716 260 GSKKENFQRGVELRGRITLLAEGCRGSLSEKLI 292 (592)
Q Consensus 260 G~~~~~f~~g~~i~a~~vI~A~G~~s~vr~~l~ 292 (592)
|-. -|-..++|++||.|||.-..+.+.+.
T Consensus 157 ~lh----vDPl~i~a~~VvDaTGHda~v~~~~~ 185 (262)
T COG1635 157 GLH----VDPLTIRAKAVVDATGHDAEVVSFLA 185 (262)
T ss_pred ccc----cCcceeeEEEEEeCCCCchHHHHHHH
Confidence 421 12368999999999999888776553
No 68
>PLN02661 Putative thiazole synthesis
Probab=99.53 E-value=5e-13 Score=136.71 Aligned_cols=153 Identities=22% Similarity=0.339 Sum_probs=97.8
Q ss_pred ccccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCcc-ChH----HHHHhhHhhhhcCCCee
Q 007716 104 ESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVF-EPR----ALNELLPQWKQEEAPIR 178 (592)
Q Consensus 104 ~~~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i-~~~----~l~~ll~~~~~~~~~~~ 178 (592)
+..++||+|||||++|+++|+.|++. +|++|+||||...+|+....|+.+ +.. ...+++.++. .++.
T Consensus 89 ~~~~~DVlIVGaG~AGl~AA~~La~~-----~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElG---V~fd 160 (357)
T PLN02661 89 TYADTDVVIVGAGSAGLSCAYELSKN-----PNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELG---VPYD 160 (357)
T ss_pred hcccCCEEEECCHHHHHHHHHHHHHc-----CCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcC---CCcc
Confidence 34679999999999999999999974 389999999998877644333322 111 1122222221 1110
Q ss_pred eeccCCcEEEeecCCcccCCCCCCCCCcEEE--cHHHHHHHHHHHHHH-cCCEEecCceEEEEEEcCCCcEEEEEeccCc
Q 007716 179 VPVSSDKFWFLTKDRAFSLPSPFSNRGNYVI--SLSQLVRWLGGKAEE-LGVEIYPGFAASEILYDADNKVIGIGTNDMG 255 (592)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~l~~~L~~~a~~-~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g 255 (592)
..++|.+ +...+...|.+++.+ .|++++.++.+.++..++ +++.||.++...
T Consensus 161 ------------------------~~dgy~vv~ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~-grVaGVVvnw~~ 215 (357)
T PLN02661 161 ------------------------EQENYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-DRVGGVVTNWAL 215 (357)
T ss_pred ------------------------cCCCeeEecchHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecC-CEEEEEEeecch
Confidence 0012222 334566777776655 689999999999999876 778899875433
Q ss_pred ccCCCCcccccccceEEEcCEEEEecCCCCcchHH
Q 007716 256 IAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEK 290 (592)
Q Consensus 256 ~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~vr~~ 290 (592)
+..++......+ ...++||.||+|||..+.+...
T Consensus 216 v~~~~~~~s~~d-p~~I~AkaVVlATGh~g~~ga~ 249 (357)
T PLN02661 216 VAQNHDTQSCMD-PNVMEAKVVVSSCGHDGPFGAT 249 (357)
T ss_pred hhhccCCCCccc-eeEEECCEEEEcCCCCCcchhh
Confidence 222222100011 1479999999999988765443
No 69
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.53 E-value=7.1e-13 Score=138.83 Aligned_cols=161 Identities=30% Similarity=0.455 Sum_probs=101.4
Q ss_pred cEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCc-c-cccCccChH-------HHH-------HhhHhhhh
Q 007716 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAH-I-ISGNVFEPR-------ALN-------ELLPQWKQ 172 (592)
Q Consensus 109 DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~-~-~~g~~i~~~-------~l~-------~ll~~~~~ 172 (592)
||+|||||++|+++|+.|++. |.+|+|||+. .++.. + .+++.+.+. .+. +.++.|..
T Consensus 1 DvvIIGaGi~G~~~A~~La~~------G~~V~l~e~~-~~~~~aS~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 73 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARR------GHSVTLLERG-DIGSGASGRSGGLVRPGISSYPDPQYARLARESVEFWRELAE 73 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHT------TSEEEEEESS-STTSSGGGSSSEEEECSGSHHSSHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEECcCHHHHHHHHHHHHC------CCeEEEEeec-cccccccccccccccccccccccccccchhhhhccchhhhhh
Confidence 899999999999999999998 9999999999 44432 2 233333221 111 12233311
Q ss_pred c-CCCeeeeccC-CcEE--------------------------EeecCCcc-cCCCCC-------CCCCcEEEcHHHHHH
Q 007716 173 E-EAPIRVPVSS-DKFW--------------------------FLTKDRAF-SLPSPF-------SNRGNYVISLSQLVR 216 (592)
Q Consensus 173 ~-~~~~~~~~~~-~~~~--------------------------~~~~~~~~-~~~~~~-------~~~~~~~v~~~~l~~ 216 (592)
. ..+.. ... ..+. +++..... ..|... .......++...+.+
T Consensus 74 ~~~~~~~--~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~i~~~~l~~ 151 (358)
T PF01266_consen 74 EYGIPVG--FRPCGSLYLAEDEEDAESLERLLDRLRRNGIPYELLSPEELRELFPFLNPRIEGGVFFPEGGVIDPRRLIQ 151 (358)
T ss_dssp HTTSSCE--EEECEEEEEESSHHHHHHHHHHHHHHHHTTTTEEEEEHHHHHHHSTTSSTTTEEEEEETTEEEEEHHHHHH
T ss_pred hcCcccc--cccccccccccchhhhhhccccccccccccccccccchhhhhhhhcccccchhhhhcccccccccccchhh
Confidence 1 11111 101 1111 11110000 011111 113355689999999
Q ss_pred HHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcC
Q 007716 217 WLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFK 296 (592)
Q Consensus 217 ~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~vr~~l~~~~~ 296 (592)
.|.+.+++.|++|+.+++|+++..++ +.+.+|.+.+ |. ++||.||+|+|.++ ..+.+..+
T Consensus 152 ~l~~~~~~~Gv~i~~~~~V~~i~~~~-~~v~gv~~~~---------------g~-i~ad~vV~a~G~~s---~~l~~~~~ 211 (358)
T PF01266_consen 152 ALAAEAQRAGVEIRTGTEVTSIDVDG-GRVTGVRTSD---------------GE-IRADRVVLAAGAWS---PQLLPLLG 211 (358)
T ss_dssp HHHHHHHHTT-EEEESEEEEEEEEET-TEEEEEEETT---------------EE-EEECEEEE--GGGH---HHHHHTTT
T ss_pred hhHHHHHHhhhhccccccccchhhcc-cccccccccc---------------cc-cccceeEecccccc---eeeeeccc
Confidence 99999999999999999999999987 6677899987 54 99999999999875 35665565
Q ss_pred CC
Q 007716 297 LR 298 (592)
Q Consensus 297 l~ 298 (592)
.+
T Consensus 212 ~~ 213 (358)
T PF01266_consen 212 LD 213 (358)
T ss_dssp TS
T ss_pred cc
Confidence 53
No 70
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.51 E-value=4.1e-12 Score=136.69 Aligned_cols=71 Identities=18% Similarity=0.271 Sum_probs=56.4
Q ss_pred EEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCCCcc
Q 007716 208 VISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (592)
Q Consensus 208 ~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~v 287 (592)
.++...++..|.+.+++.|++|+++++|++++.++ +.+++|++.+ .+++||.||+|+|.++.
T Consensus 197 ~~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~-~~~~~v~t~~----------------~~~~a~~VV~a~G~~~~- 258 (416)
T PRK00711 197 TGDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEG-GRITGVQTGG----------------GVITADAYVVALGSYST- 258 (416)
T ss_pred cCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecC-CEEEEEEeCC----------------cEEeCCEEEECCCcchH-
Confidence 45677999999999999999999999999998776 4555677654 47899999999999873
Q ss_pred hHHHHHHcCCC
Q 007716 288 SEKLIKNFKLR 298 (592)
Q Consensus 288 r~~l~~~~~l~ 298 (592)
.+.+..+++
T Consensus 259 --~l~~~~g~~ 267 (416)
T PRK00711 259 --ALLKPLGVD 267 (416)
T ss_pred --HHHHHhCCC
Confidence 455555544
No 71
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.50 E-value=1.8e-13 Score=139.27 Aligned_cols=163 Identities=25% Similarity=0.306 Sum_probs=108.8
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCccc-ccC--c--cChHHHHHhhHhhhhcCCC----
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII-SGN--V--FEPRALNELLPQWKQEEAP---- 176 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~-~g~--~--i~~~~l~~ll~~~~~~~~~---- 176 (592)
+.+||+|||||||||.||+.+++. |.+|+|||+.+.+|...+ +|+ | -+....++++......+.-
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~------G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sa 75 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKA------GRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSA 75 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhc------CCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHH
Confidence 468999999999999999999999 999999999999887653 332 2 1112233333222211100
Q ss_pred --------eeeeccCCcEEEeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEE
Q 007716 177 --------IRVPVSSDKFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIG 248 (592)
Q Consensus 177 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~ 248 (592)
+...+....+.+.....+--+|..+ .-..+.+.|..++++.||+|+++++|.++..+++ ...
T Consensus 76 l~~ft~~d~i~~~e~~Gi~~~e~~~Gr~Fp~sd--------kA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~--~f~ 145 (408)
T COG2081 76 LARFTPEDFIDWVEGLGIALKEEDLGRMFPDSD--------KASPIVDALLKELEALGVTIRTRSRVSSVEKDDS--GFR 145 (408)
T ss_pred HHhCCHHHHHHHHHhcCCeeEEccCceecCCcc--------chHHHHHHHHHHHHHcCcEEEecceEEeEEecCc--eEE
Confidence 0011112222222222222233211 2368999999999999999999999999998873 345
Q ss_pred EEeccCcccCCCCcccccccceEEEcCEEEEecCCCCc-------chHHHHHHcCCCc
Q 007716 249 IGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS-------LSEKLIKNFKLRE 299 (592)
Q Consensus 249 V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~-------vr~~l~~~~~l~~ 299 (592)
|.+.+ |.+++||.+|+|+|+.|. ..-++.+++|++.
T Consensus 146 l~t~~---------------g~~i~~d~lilAtGG~S~P~lGstg~gy~iA~~~G~~I 188 (408)
T COG2081 146 LDTSS---------------GETVKCDSLILATGGKSWPKLGSTGFGYPIARQFGHTI 188 (408)
T ss_pred EEcCC---------------CCEEEccEEEEecCCcCCCCCCCCchhhHHHHHcCCcc
Confidence 77765 568999999999997664 2456677778775
No 72
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.48 E-value=1.3e-11 Score=132.52 Aligned_cols=72 Identities=17% Similarity=0.189 Sum_probs=55.8
Q ss_pred EEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCCCcc
Q 007716 208 VISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (592)
Q Consensus 208 ~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~v 287 (592)
.++...+...|.+.+++.|++++.+++|++++..+++.+++|++.+ | ++.|+.||+|+|+++.
T Consensus 179 ~v~p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~---------------g-~i~a~~vVvaagg~~~- 241 (407)
T TIGR01373 179 TARHDAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTR---------------G-FIGAKKVGVAVAGHSS- 241 (407)
T ss_pred cCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCC---------------c-eEECCEEEECCChhhH-
Confidence 4567788888999999999999999999999865446676788765 3 6999999999998874
Q ss_pred hHHHHHHcCCC
Q 007716 288 SEKLIKNFKLR 298 (592)
Q Consensus 288 r~~l~~~~~l~ 298 (592)
.+.+..+++
T Consensus 242 --~l~~~~g~~ 250 (407)
T TIGR01373 242 --VVAAMAGFR 250 (407)
T ss_pred --HHHHHcCCC
Confidence 233334544
No 73
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.43 E-value=7e-13 Score=140.56 Aligned_cols=158 Identities=26% Similarity=0.353 Sum_probs=84.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCccc-c--cCc------cC-----------hHHHHHhh
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII-S--GNV------FE-----------PRALNELL 167 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~-~--g~~------i~-----------~~~l~~ll 167 (592)
|||+|||||||||.||+.|++. |++|+|+||.+.+|.... + |.| ++ ++.+...+
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~------g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l 74 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEK------GARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSAL 74 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHT------T--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHH
T ss_pred CcEEEECCCHHHHHHHHHHHhC------CCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHH
Confidence 7999999999999999999998 999999999998875542 2 211 11 11111111
Q ss_pred HhhhhcCCCeeeeccCCcEEEeecCCcccCCCCCCCCCcEEE--cHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCc
Q 007716 168 PQWKQEEAPIRVPVSSDKFWFLTKDRAFSLPSPFSNRGNYVI--SLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNK 245 (592)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~ 245 (592)
..|...+ +...+....+.+..... ..-|.. ....+.+.|.+.+++.||+|+++++|.+++.++ +.
T Consensus 75 ~~f~~~d--~~~ff~~~Gv~~~~~~~----------gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~-~~ 141 (409)
T PF03486_consen 75 KRFSPED--LIAFFEELGVPTKIEED----------GRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKE-DG 141 (409)
T ss_dssp HHS-HHH--HHHHHHHTT--EEE-ST----------TEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEET-TE
T ss_pred hcCCHHH--HHHHHHhcCCeEEEcCC----------CEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecC-Cc
Confidence 1111000 00000001111100000 001222 247889999999999999999999999999877 44
Q ss_pred EEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCCCcc-------hHHHHHHcCCCc
Q 007716 246 VIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL-------SEKLIKNFKLRE 299 (592)
Q Consensus 246 v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~v-------r~~l~~~~~l~~ 299 (592)
+..|++.+ +.++.||.||+|+|+.|.- .-.+.+++|...
T Consensus 142 ~f~v~~~~---------------~~~~~a~~vILAtGG~S~p~~GS~G~gy~~a~~lGh~i 187 (409)
T PF03486_consen 142 VFGVKTKN---------------GGEYEADAVILATGGKSYPKTGSDGSGYRIAKKLGHTI 187 (409)
T ss_dssp EEEEEETT---------------TEEEEESEEEE----SSSGGGT-SSHHHHHHHHTT--E
T ss_pred eeEeeccC---------------cccccCCEEEEecCCCCccccCCCcHHHHHHHHCCCcE
Confidence 66788843 4799999999999987632 245566677664
No 74
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.43 E-value=3.3e-11 Score=129.41 Aligned_cols=74 Identities=15% Similarity=0.114 Sum_probs=52.4
Q ss_pred EcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCCCcch
Q 007716 209 ISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLS 288 (592)
Q Consensus 209 v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~vr 288 (592)
++...+...|.+.+++.|++|+++++|+++..++ +.+ .|.+.+ .++. ++.+++||.||+|+|.++.
T Consensus 194 ~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~-~~~-~v~~~~----~~~~------~~~~i~a~~vV~a~G~~s~-- 259 (410)
T PRK12409 194 GDIHKFTTGLAAACARLGVQFRYGQEVTSIKTDG-GGV-VLTVQP----SAEH------PSRTLEFDGVVVCAGVGSR-- 259 (410)
T ss_pred cCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeC-CEE-EEEEEc----CCCC------ccceEecCEEEECCCcChH--
Confidence 5667888999999999999999999999998765 333 344432 0010 0247899999999999974
Q ss_pred HHHHHHcCC
Q 007716 289 EKLIKNFKL 297 (592)
Q Consensus 289 ~~l~~~~~l 297 (592)
.+.+.++.
T Consensus 260 -~l~~~~~~ 267 (410)
T PRK12409 260 -ALAAMLGD 267 (410)
T ss_pred -HHHHHhCC
Confidence 34444443
No 75
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.40 E-value=8.5e-11 Score=124.84 Aligned_cols=72 Identities=21% Similarity=0.195 Sum_probs=55.7
Q ss_pred cEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCCC
Q 007716 206 NYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRG 285 (592)
Q Consensus 206 ~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s 285 (592)
...++...+.+.|.+.+++.|++++.+++|+++..++ +.+ .|.+.+ .++.||.||+|+|.++
T Consensus 139 ~g~i~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~-~~~-~v~~~~----------------~~i~a~~vV~aaG~~~ 200 (380)
T TIGR01377 139 GGVLYAEKALRALQELAEAHGATVRDGTKVVEIEPTE-LLV-TVKTTK----------------GSYQANKLVVTAGAWT 200 (380)
T ss_pred CcEEcHHHHHHHHHHHHHHcCCEEECCCeEEEEEecC-CeE-EEEeCC----------------CEEEeCEEEEecCcch
Confidence 4567889999999999999999999999999998765 333 466654 4789999999999985
Q ss_pred cchHHHHHHcCCC
Q 007716 286 SLSEKLIKNFKLR 298 (592)
Q Consensus 286 ~vr~~l~~~~~l~ 298 (592)
. .+.+.+++.
T Consensus 201 ~---~l~~~~g~~ 210 (380)
T TIGR01377 201 S---KLLSPLGIE 210 (380)
T ss_pred H---HHhhhcccC
Confidence 3 343344543
No 76
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.40 E-value=1.7e-11 Score=128.95 Aligned_cols=171 Identities=27% Similarity=0.345 Sum_probs=108.6
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccc--cCcc------ChHHH--------HHhhHh
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIIS--GNVF------EPRAL--------NELLPQ 169 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~--g~~i------~~~~l--------~~ll~~ 169 (592)
+++||+|||||+.|+++|+.|+++ .|+++|+|+||...++.+..+ .+++ .|..+ ++..-.
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~----~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~ 77 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEY----EPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFA 77 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHh----CCCceEEEEEccCccccccccCcccceeccccCCCcchhhHHHHHHHHHHHH
Confidence 579999999999999999999999 334999999999988765432 2222 12111 011111
Q ss_pred hhh-cCCCe------eeeccCCc------------------EEEeecCCcccC-CCC-------CCCCCcEEEcHHHHHH
Q 007716 170 WKQ-EEAPI------RVPVSSDK------------------FWFLTKDRAFSL-PSP-------FSNRGNYVISLSQLVR 216 (592)
Q Consensus 170 ~~~-~~~~~------~~~~~~~~------------------~~~~~~~~~~~~-~~~-------~~~~~~~~v~~~~l~~ 216 (592)
|.. ...++ ......+. +..++...-..+ |.. ..-..+.+|+...+..
T Consensus 78 ~~kq~~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~~~~~t~ 157 (429)
T COG0579 78 ICKQLGIPFINCGKLSVATGEEEVERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDPGELTR 157 (429)
T ss_pred HHHHhCCcccccCeEEEEEChHHHHHHHHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcCCCceEcHHHHHH
Confidence 111 11111 11111111 111111111111 111 1123356789999999
Q ss_pred HHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceE-EEcCEEEEecCCCCcchHHHHHHc
Q 007716 217 WLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVE-LRGRITLLAEGCRGSLSEKLIKNF 295 (592)
Q Consensus 217 ~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~-i~a~~vI~A~G~~s~vr~~l~~~~ 295 (592)
.|.+.++++|++++++++|++|...+|| ++.+.+.+ |.+ ++||.||.|.|..+. .|.+..
T Consensus 158 ~l~e~a~~~g~~i~ln~eV~~i~~~~dg-~~~~~~~~---------------g~~~~~ak~Vin~AGl~Ad---~la~~~ 218 (429)
T COG0579 158 ALAEEAQANGVELRLNTEVTGIEKQSDG-VFVLNTSN---------------GEETLEAKFVINAAGLYAD---PLAQMA 218 (429)
T ss_pred HHHHHHHHcCCEEEecCeeeEEEEeCCc-eEEEEecC---------------CcEEEEeeEEEECCchhHH---HHHHHh
Confidence 9999999999999999999999998876 44455554 334 999999999999864 566667
Q ss_pred CCCc
Q 007716 296 KLRE 299 (592)
Q Consensus 296 ~l~~ 299 (592)
+++.
T Consensus 219 g~~~ 222 (429)
T COG0579 219 GIPE 222 (429)
T ss_pred CCCc
Confidence 7774
No 77
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.40 E-value=1.4e-11 Score=134.13 Aligned_cols=62 Identities=24% Similarity=0.144 Sum_probs=51.4
Q ss_pred cEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCCC
Q 007716 206 NYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRG 285 (592)
Q Consensus 206 ~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s 285 (592)
...++...+++.|.+.+++.||+|+.+++|+++... + .+.|++.+ .+++||.||+|+|+++
T Consensus 177 ~g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~--~-~~~v~t~~----------------g~v~A~~VV~Atga~s 237 (460)
T TIGR03329 177 AASVQPGLLVRGLRRVALELGVEIHENTPMTGLEEG--Q-PAVVRTPD----------------GQVTADKVVLALNAWM 237 (460)
T ss_pred CeEECHHHHHHHHHHHHHHcCCEEECCCeEEEEeeC--C-ceEEEeCC----------------cEEECCEEEEcccccc
Confidence 456789999999999999999999999999998752 2 34577654 3689999999999986
Q ss_pred c
Q 007716 286 S 286 (592)
Q Consensus 286 ~ 286 (592)
.
T Consensus 238 ~ 238 (460)
T TIGR03329 238 A 238 (460)
T ss_pred c
Confidence 4
No 78
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.40 E-value=9.7e-11 Score=129.93 Aligned_cols=172 Identities=17% Similarity=0.220 Sum_probs=102.3
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCC-cccccCccCh---------HHHH------HhhHh
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGA-HIISGNVFEP---------RALN------ELLPQ 169 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~-~~~~g~~i~~---------~~l~------~ll~~ 169 (592)
+.+||+|||||+.|+++|+.|+++ |++|+||||.....+ ...+.+.+.. .... +++..
T Consensus 5 ~~~DVvIIGGGi~G~~iA~~La~r------G~~V~LlEk~d~~~GaS~~~~gllh~g~ry~~~~~~~~~~~~~e~~~l~~ 78 (546)
T PRK11101 5 QETDVIIIGGGATGAGIARDCALR------GLRCILVERHDIATGATGRNHGLLHSGARYAVTDAESARECISENQILKR 78 (546)
T ss_pred ccccEEEECcCHHHHHHHHHHHHc------CCeEEEEECCCCCCCcccccccceeccchhcccCHHHHHHHHHHHHHHHH
Confidence 469999999999999999999999 999999999764322 2223333321 1000 11121
Q ss_pred hhhc----CCCeeeeccCCc-----------------EEEeecCCccc-CCCC-------CCCCCcEEEcHHHHHHHHHH
Q 007716 170 WKQE----EAPIRVPVSSDK-----------------FWFLTKDRAFS-LPSP-------FSNRGNYVISLSQLVRWLGG 220 (592)
Q Consensus 170 ~~~~----~~~~~~~~~~~~-----------------~~~~~~~~~~~-~~~~-------~~~~~~~~v~~~~l~~~L~~ 220 (592)
+... ...+......+. ..+++...... .|.. +... ...++...++..+..
T Consensus 79 ~a~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~Gi~~~~l~~~e~~~~eP~l~~~~~ga~~~~-dg~vdp~rl~~al~~ 157 (546)
T PRK11101 79 IARHCVEPTDGLFITLPEDDLAFQATFIRACEEAGIEAEAIDPQQALILEPAVNPALIGAVKVP-DGTVDPFRLTAANML 157 (546)
T ss_pred hchHhhcccCCceEEeccccHHHHHHHHHHHHHcCCCcEEECHHHHHHhCCCcCccceEEEEec-CcEECHHHHHHHHHH
Confidence 1110 000001111111 01111000000 1100 0111 246788999999999
Q ss_pred HHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCC
Q 007716 221 KAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLR 298 (592)
Q Consensus 221 ~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~vr~~l~~~~~l~ 298 (592)
.|.++|++++++++|+++..++ +.+++|++.|. .+|+ +.+++||.||.|+|.++. ++.+..+++
T Consensus 158 ~A~~~Ga~i~~~t~V~~i~~~~-~~v~gv~v~d~---~~g~-------~~~i~A~~VVnAaG~wa~---~l~~~~g~~ 221 (546)
T PRK11101 158 DAKEHGAQILTYHEVTGLIREG-DTVCGVRVRDH---LTGE-------TQEIHAPVVVNAAGIWGQ---HIAEYADLR 221 (546)
T ss_pred HHHhCCCEEEeccEEEEEEEcC-CeEEEEEEEEc---CCCc-------EEEEECCEEEECCChhHH---HHHHhcCCC
Confidence 9999999999999999998875 66778877541 1222 257999999999999963 454444543
No 79
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.39 E-value=4e-11 Score=127.16 Aligned_cols=61 Identities=18% Similarity=0.198 Sum_probs=50.3
Q ss_pred EEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCCCc
Q 007716 208 VISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 286 (592)
Q Consensus 208 ~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~ 286 (592)
.++...+...+.+.+.+.|++++.+++|+++..+++ . +.|++.+ | ++.||.||+|+|.++.
T Consensus 145 ~v~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~-~-~~v~~~~---------------g-~~~a~~vV~A~G~~~~ 205 (376)
T PRK11259 145 FLRPELAIKAHLRLAREAGAELLFNEPVTAIEADGD-G-VTVTTAD---------------G-TYEAKKLVVSAGAWVK 205 (376)
T ss_pred EEcHHHHHHHHHHHHHHCCCEEECCCEEEEEEeeCC-e-EEEEeCC---------------C-EEEeeEEEEecCcchh
Confidence 467788889999999999999999999999988653 3 3577654 3 7899999999999864
No 80
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.38 E-value=5.9e-11 Score=134.95 Aligned_cols=154 Identities=16% Similarity=0.139 Sum_probs=94.1
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCC--CcccccCccChH---------HH--------HHhh
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVG--AHIISGNVFEPR---------AL--------NELL 167 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g--~~~~~g~~i~~~---------~l--------~~ll 167 (592)
.+||+|||||++|+++|+.|++. |++|+|||+...++ +...+++.+.+. .+ .+++
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~~------G~~V~VlE~~~~~~~gaSg~~~G~l~~~~~~~~~~~~~l~~~a~~~a~~~~ 333 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALARR------GWQVTLYEADEAPAQGASGNRQGALYPLLSKDDNALSRFFRAAFLFARRFY 333 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHHC------CCeEEEEecCCCccccCCcCcccccccccCCCCCHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999 99999999986443 333344444221 00 1122
Q ss_pred HhhhhcCCCeeeeccCCcEEEee-cC-------------Cc---cc----------CCCC-----CCCCCcEEEcHHHHH
Q 007716 168 PQWKQEEAPIRVPVSSDKFWFLT-KD-------------RA---FS----------LPSP-----FSNRGNYVISLSQLV 215 (592)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~-~~-------------~~---~~----------~~~~-----~~~~~~~~v~~~~l~ 215 (592)
..+...+... .........+. .. .. .. .+.. ........++...++
T Consensus 334 ~~l~~~~~~~--~~~~~G~l~~a~~~~~~~~l~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~g~~~p~~G~v~p~~l~ 411 (662)
T PRK01747 334 DALPAAGVAF--DHDWCGVLQLAWDEKSAEKIAKMLALGLPAELARALDAEEAEELAGLPVPCGGIFYPQGGWLCPAELC 411 (662)
T ss_pred HHHHhcCCCC--CCCCCceEEeecCchHHHHHHHHHhccCchHhhhhCCHHHHHHHhCCCCCCCcEEeCCCCeeCHHHHH
Confidence 2222101100 00000110000 00 00 00 0100 111123457888999
Q ss_pred HHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCCCc
Q 007716 216 RWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 286 (592)
Q Consensus 216 ~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~ 286 (592)
+.|.+.+++ |+++++++.|+++..++ +.+ .|.+.+ |..++||.||+|+|.++.
T Consensus 412 ~aL~~~a~~-Gv~i~~~~~V~~i~~~~-~~~-~v~t~~---------------g~~~~ad~VV~A~G~~s~ 464 (662)
T PRK01747 412 RALLALAGQ-QLTIHFGHEVARLERED-DGW-QLDFAG---------------GTLASAPVVVLANGHDAA 464 (662)
T ss_pred HHHHHhccc-CcEEEeCCEeeEEEEeC-CEE-EEEECC---------------CcEEECCEEEECCCCCcc
Confidence 999999999 99999999999998766 334 366654 456789999999999974
No 81
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.36 E-value=4.2e-10 Score=126.46 Aligned_cols=70 Identities=16% Similarity=0.167 Sum_probs=55.7
Q ss_pred EEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcC-CCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCCC
Q 007716 207 YVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDA-DNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRG 285 (592)
Q Consensus 207 ~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~-~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s 285 (592)
..++...+...|.+.+++.|++|+.+++|+++..++ ++.+++|++.|. .+|+ ..+++||.||+|+|+++
T Consensus 227 g~vdp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~---~tg~-------~~~i~a~~VVnAaGaws 296 (627)
T PLN02464 227 GQMNDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDN---LTGK-------EFDVYAKVVVNAAGPFC 296 (627)
T ss_pred cEEcHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEEC---CCCc-------EEEEEeCEEEECCCHhH
Confidence 346889999999999999999999999999998764 467778776441 1121 13789999999999997
Q ss_pred c
Q 007716 286 S 286 (592)
Q Consensus 286 ~ 286 (592)
.
T Consensus 297 ~ 297 (627)
T PLN02464 297 D 297 (627)
T ss_pred H
Confidence 4
No 82
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=99.35 E-value=7.5e-13 Score=142.56 Aligned_cols=141 Identities=25% Similarity=0.363 Sum_probs=39.2
Q ss_pred cEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChH-------HHHHhhHhhhhcCCCeeeec
Q 007716 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPR-------ALNELLPQWKQEEAPIRVPV 181 (592)
Q Consensus 109 DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~-------~l~~ll~~~~~~~~~~~~~~ 181 (592)
|||||||||||++||+.+++. |++|+||||...+|+...+++..... ....+..++...-.... ..
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~------G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~-~~ 73 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARA------GAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARG-GY 73 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHT------TS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-------
T ss_pred CEEEECccHHHHHHHHHHHHC------CCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhc-cc
Confidence 899999999999999999999 99999999999999877666543211 11122222222100000 00
Q ss_pred cCCcEEEeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCC
Q 007716 182 SSDKFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGS 261 (592)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~ 261 (592)
..+........+.+++..+...|.+.+++.||+|++++.|.++..++ ++|++|++.+ ++|.
T Consensus 74 --------------~~~~~~~~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~-~~i~~V~~~~----~~g~ 134 (428)
T PF12831_consen 74 --------------PQEDRYGWVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDG-GRITGVIVET----KSGR 134 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------ccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccc----cccc
Confidence 00000000001345666777788888888999999999999999976 7788999875 3342
Q ss_pred cccccccceEEEcCEEEEecCC
Q 007716 262 KKENFQRGVELRGRITLLAEGC 283 (592)
Q Consensus 262 ~~~~f~~g~~i~a~~vI~A~G~ 283 (592)
.+++||++|+|||-
T Consensus 135 --------~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 135 --------KEIRAKVFIDATGD 148 (428)
T ss_dssp ----------------------
T ss_pred --------cccccccccccccc
Confidence 78999999999993
No 83
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.35 E-value=8e-11 Score=125.73 Aligned_cols=168 Identities=24% Similarity=0.292 Sum_probs=101.3
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcc--cccCccC------hHHH--------HHhhHh
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI--ISGNVFE------PRAL--------NELLPQ 169 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~--~~g~~i~------~~~l--------~~ll~~ 169 (592)
|.+||+|||||++|+++|+.|+++ .+|.+|+|+||...++... .+++.+. +..+ .+++++
T Consensus 1 ~~~dVvIIGgGi~G~s~A~~La~~----~~g~~V~llE~~~~~~~~aS~~~~g~l~~~~~~~~~~~~~~l~~~~~~~~~~ 76 (393)
T PRK11728 1 AMYDFVIIGGGIVGLSTAMQLQER----YPGARIAVLEKESGPARHQTGHNSGVIHAGVYYTPGSLKARFCRRGNEATKA 76 (393)
T ss_pred CCccEEEECCcHHHHHHHHHHHHh----CCCCeEEEEeCCCcccccccccCcceEccccccCcHHHHHHHHHHHHHHHHH
Confidence 358999999999999999999986 3589999999986554321 2223221 1111 112223
Q ss_pred hhhc-CCCee------eeccCC-----------------cEEEeecCCcc-cCCC-----CCCCCCcEEEcHHHHHHHHH
Q 007716 170 WKQE-EAPIR------VPVSSD-----------------KFWFLTKDRAF-SLPS-----PFSNRGNYVISLSQLVRWLG 219 (592)
Q Consensus 170 ~~~~-~~~~~------~~~~~~-----------------~~~~~~~~~~~-~~~~-----~~~~~~~~~v~~~~l~~~L~ 219 (592)
|... +.++. .....+ .+.+++...-. ..|. .........++...+.+.|.
T Consensus 77 ~~~~~~~~~~~~G~l~~~~~~~~~~~l~~~~~~~~~~g~~~~~l~~~el~~~~P~l~~~~al~~p~~g~vd~~~l~~aL~ 156 (393)
T PRK11728 77 FCDQHGIPYEECGKLLVATSELELERMEALYERARANGIEVERLDAEELREREPNIRGLGAIFVPSTGIVDYRAVAEAMA 156 (393)
T ss_pred HHHHcCCCcccCCEEEEEcCHHHHHHHHHHHHHHHHCCCcEEEeCHHHHHHhCCCccccceEEcCCceEECHHHHHHHHH
Confidence 2211 11110 000000 01111100000 0110 11122345678899999999
Q ss_pred HHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCC
Q 007716 220 GKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLR 298 (592)
Q Consensus 220 ~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~vr~~l~~~~~l~ 298 (592)
+.+++.|++++++++|+++..++ +.+ .|.+.+ | +++||.||+|+|.++. .+.+.++++
T Consensus 157 ~~~~~~Gv~i~~~~~V~~i~~~~-~~~-~V~~~~---------------g-~i~ad~vV~A~G~~s~---~l~~~~g~~ 214 (393)
T PRK11728 157 ELIQARGGEIRLGAEVTALDEHA-NGV-VVRTTQ---------------G-EYEARTLINCAGLMSD---RLAKMAGLE 214 (393)
T ss_pred HHHHhCCCEEEcCCEEEEEEecC-CeE-EEEECC---------------C-EEEeCEEEECCCcchH---HHHHHhCCC
Confidence 99999999999999999988765 333 566654 3 7999999999999974 344445654
No 84
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=99.35 E-value=6.7e-11 Score=125.85 Aligned_cols=202 Identities=20% Similarity=0.189 Sum_probs=108.4
Q ss_pred cEEEcHHHHHHHHHHHHHHcC-CEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCC
Q 007716 206 NYVISLSQLVRWLGGKAEELG-VEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCR 284 (592)
Q Consensus 206 ~~~v~~~~l~~~L~~~a~~~G-v~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~ 284 (592)
...++...+.+.|.+.+++.| ..+..++.+..+..+ . .+++|.+.+ | +++|+.||+|+|.+
T Consensus 150 ~~~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~-~-~~~~v~t~~---------------g-~i~a~~vv~a~G~~ 211 (387)
T COG0665 150 GGHLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERD-G-RVVGVETDG---------------G-TIEADKVVLAAGAW 211 (387)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEec-C-cEEEEEeCC---------------c-cEEeCEEEEcCchH
Confidence 445778899999999999999 556668888888776 2 466788875 4 49999999999998
Q ss_pred CcchHHHHHHcC-CCcccccCcccceeeEEEEEeecCCC--CCCCcEEEEeccCCCCCCcceEEEEEcCCCeEEEEEEec
Q 007716 285 GSLSEKLIKNFK-LREKSHAQHQTYALGIKEVWEIDEGK--HNPGEILHTLGWPLDQKTYGGSFLYHMNDRQIALGLVVA 361 (592)
Q Consensus 285 s~vr~~l~~~~~-l~~~~~~~~~~~~~g~~~~~~i~~~~--~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~vg~~~~ 361 (592)
+. .+...++ +.. ...+. .+.. ..+.... .......... .. .....|+.+..++.+.+|....
T Consensus 212 ~~---~l~~~~~~~~~--~~~p~---~~~~--~~~~~~~~~~~~~~~~~~~--~~---~~~~~y~~~~~~g~~~~g~~~~ 276 (387)
T COG0665 212 AG---ELAATLGELPL--PLRPV---RGQA--LTTEPPEGLLADGLAPVVL--VV---DDGGGYIRPRGDGRLRVGGTDE 276 (387)
T ss_pred HH---HHHHhcCCCcC--ccccc---cceE--EEecCCCccccccccceEE--Ee---cCCceEEEEcCCCcEEEeeccc
Confidence 64 4443444 221 00111 1111 1111111 0000000000 01 1234678887777888887654
Q ss_pred ccC-CCCCCCcHH-----HHHHhh-cCccccccccCCceeeecceeeecCCccccCcccCCCEEEEcC-----CCcccCC
Q 007716 362 LNY-HNPFLNPYE-----EFQKFK-HHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIGC-----AAGFLNV 429 (592)
Q Consensus 362 ~~~-~~~~~~~~~-----~~~~~~-~~p~i~~~l~~~~~~~~~~~~i~~gg~~~~p~~~~~~v~LiGD-----AA~~~~P 429 (592)
... ......+.+ ...... ..|.+.... ... .+.|+. +....++.-+||- -.....-
T Consensus 277 ~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~----~~~------~w~g~~--~~t~pd~~P~iG~~~~~~~l~~a~G 344 (387)
T COG0665 277 EGGDDPSDPEREDLVIAELLRVARALLPGLADAG----IEA------AWAGLR--PPTTPDGLPVIGRAAPLPNLYVATG 344 (387)
T ss_pred ccCCCCccccCcchhHHHHHHHHHHhCccccccc----cce------eeeccc--cCCCCCCCceeCCCCCCCCEEEEec
Confidence 431 111112222 111111 123332211 111 122222 1111455566663 2222235
Q ss_pred CCccchHHHHHHHHHHHHHHhhh
Q 007716 430 PKIKGTHTAMKSGMLAAEAGFGV 452 (592)
Q Consensus 430 ~~g~G~~~Am~dg~~aA~~l~~~ 452 (592)
+.+.|+.++...|+++|+.|...
T Consensus 345 ~~~~G~~~~p~~g~~lA~li~g~ 367 (387)
T COG0665 345 HGGHGFTLAPALGRLLADLILGG 367 (387)
T ss_pred CCCcChhhccHHHHHHHHHHcCC
Confidence 67889999999999999998874
No 85
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.34 E-value=3.2e-10 Score=124.74 Aligned_cols=67 Identities=19% Similarity=0.162 Sum_probs=51.5
Q ss_pred EEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCCCc
Q 007716 208 VISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 286 (592)
Q Consensus 208 ~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~ 286 (592)
.++...+...+.+.+++.|++++.+++|+++..++ + .++|.+.+ ..+|+ ..+++||.||.|+|.++.
T Consensus 151 ~vd~~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~-~-~~~v~~~~---~~~g~-------~~~i~a~~VVnAaG~wa~ 217 (508)
T PRK12266 151 WVDDARLVVLNARDAAERGAEILTRTRVVSARREN-G-LWHVTLED---TATGK-------RYTVRARALVNAAGPWVK 217 (508)
T ss_pred ccCHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEeC-C-EEEEEEEE---cCCCC-------EEEEEcCEEEECCCccHH
Confidence 36778888899999999999999999999998764 3 34566543 11232 257999999999999974
No 86
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.33 E-value=1.9e-11 Score=131.63 Aligned_cols=161 Identities=25% Similarity=0.331 Sum_probs=92.5
Q ss_pred cEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcc-cccCccC------------hHHHHHhhHhhhhcCC
Q 007716 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI-ISGNVFE------------PRALNELLPQWKQEEA 175 (592)
Q Consensus 109 DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~-~~g~~i~------------~~~l~~ll~~~~~~~~ 175 (592)
||||||+|.|||+||+.|++. |.+|+||||....|+.. .+++.+. .....+.+.+|.....
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~------G~~V~lvek~~~~gg~~~~s~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 74 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEA------GAKVLLVEKGPRLGGSSAFSSGGFDAAGTPPQREAGIEDSPEEFFQDIMAAGG 74 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHT------TT-EEEEESSSGGGSGGGGTCSEEEESSSHSSHHTTTTCHHHHHHHHHHHHTT
T ss_pred CEEEECCCHHHHHHHHHHhhh------cCeEEEEEeecccccccccccCceeeecccccccccccccccccceeeecccc
Confidence 899999999999999999999 99999999999866643 2222211 0111122222211110
Q ss_pred Cee----------------eeccCCcEEEee-cCCccc--------CC----C-CCCCCCcEEEcHHHHHHHHHHHHHHc
Q 007716 176 PIR----------------VPVSSDKFWFLT-KDRAFS--------LP----S-PFSNRGNYVISLSQLVRWLGGKAEEL 225 (592)
Q Consensus 176 ~~~----------------~~~~~~~~~~~~-~~~~~~--------~~----~-~~~~~~~~~v~~~~l~~~L~~~a~~~ 225 (592)
... .......+.+.. ....+. .. . ..............+...|.+.+++.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~ 154 (417)
T PF00890_consen 75 GLNDPDLVRAFVENSPEAIDWLEELGVPFRRDEDGPFAPTPFGGHSPRWRSPPGNPDPPFGGLGGGKALIEALAKAAEEA 154 (417)
T ss_dssp T-S-HHHHHHHHHHHHHHHHHHHHTT--B-BGTTSSBCEEEETTESSTEEEEESSTTSSSHCCCHHHHHHHHHHHHHHHT
T ss_pred cccccchhhhhhhcccceehhhhhhcccccccccccccccccCCccccceeeeccccccccccccHHHHHHHHHHHHhhc
Confidence 000 000000111111 000000 00 0 00000012235678999999999999
Q ss_pred CCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCCCc
Q 007716 226 GVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 286 (592)
Q Consensus 226 Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~ 286 (592)
|++|++++.+++++.++ ++|+||...+ ..+|+. .+++|+.||+|+|..+.
T Consensus 155 gv~i~~~~~~~~Li~e~-g~V~Gv~~~~---~~~g~~-------~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 155 GVDIRFNTRVTDLITED-GRVTGVVAEN---PADGEF-------VRIKAKAVILATGGFGG 204 (417)
T ss_dssp TEEEEESEEEEEEEEET-TEEEEEEEEE---TTTCEE-------EEEEESEEEE----BGG
T ss_pred CeeeeccceeeeEEEeC-CceeEEEEEE---CCCCeE-------EEEeeeEEEeccCcccc
Confidence 99999999999999975 7999999874 134443 57899999999999986
No 87
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.33 E-value=1.1e-11 Score=134.29 Aligned_cols=169 Identities=24% Similarity=0.299 Sum_probs=101.7
Q ss_pred cEEEECCCHHHHHHHHHHHHhhhhcCCC-CcEEEEcCCCCCCCcc-cccCccC---hH---------HHHHhhHhhhhcC
Q 007716 109 DVVIVGAGPAGLSAAIRLKQLCREKNVD-LSVCVVEKGAEVGAHI-ISGNVFE---PR---------ALNELLPQWKQEE 174 (592)
Q Consensus 109 DVvIVGaG~aGl~aA~~La~~~~~~~~g-~~V~vlEk~~~~g~~~-~~g~~i~---~~---------~l~~ll~~~~~~~ 174 (592)
||||||||.||++||+.+++. | .+|+||||....|+.+ .+++.+. .+ ..++++.++....
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~------G~~~V~vlEk~~~~gg~s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 74 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKA------GAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGG 74 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHc------CCccEEEEecCCCCCCcccccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhc
Confidence 899999999999999999998 9 9999999998776654 3343321 11 1122222221110
Q ss_pred CCee------e--eccCCcEEEeecCCcccC-----------CCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceE
Q 007716 175 APIR------V--PVSSDKFWFLTKDRAFSL-----------PSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAA 235 (592)
Q Consensus 175 ~~~~------~--~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v 235 (592)
.... . ....+.+.|+.....+.. +..... .........+.+.|.+.+++.|++|++++.|
T Consensus 75 ~~~~~~~l~~~~~~~~~~~i~wl~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~l~~~l~~~~~~~gv~i~~~~~v 153 (439)
T TIGR01813 75 RGINDPELVRILAEESADAVDWLQDGVGARLDDLIQLGGHSVPRAHRP-TGGAGSGAEIVQKLYKKAKKEGIDTRLNSKV 153 (439)
T ss_pred CCCCCHHHHHHHHhccHHHHHHHHhCCCeeeccccccCCcCCCccccC-CCCCCCHHHHHHHHHHHHHHcCCEEEeCCEe
Confidence 0000 0 000000111110111110 000000 0011234678899999999999999999999
Q ss_pred EEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcC
Q 007716 236 SEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFK 296 (592)
Q Consensus 236 ~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~vr~~l~~~~~ 296 (592)
++++.+++++|++|.+.+ .+|+. ..+.+|.||+|+|+.+.. .++.+.+.
T Consensus 154 ~~l~~~~~g~v~Gv~~~~----~~g~~-------~~~~a~~VVlAtGg~~~n-~~m~~~~~ 202 (439)
T TIGR01813 154 EDLIQDDQGTVVGVVVKG----KGKGI-------YIKAAKAVVLATGGFGSN-KEMIAKYD 202 (439)
T ss_pred eEeEECCCCcEEEEEEEe----CCCeE-------EEEecceEEEecCCCCCC-HHHHHHhC
Confidence 999987767888887753 22221 357899999999999983 45555553
No 88
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.32 E-value=4.5e-11 Score=130.58 Aligned_cols=196 Identities=21% Similarity=0.242 Sum_probs=110.6
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCC--CCCcc-cccCc--cCh---------HHHHHhhHhhh
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAE--VGAHI-ISGNV--FEP---------RALNELLPQWK 171 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~--~g~~~-~~g~~--i~~---------~~l~~ll~~~~ 171 (592)
.++||||||+|++|++||+.|++. |.+|+||||.+. .|+.. .+++. ... ...++++.++.
T Consensus 3 ~~~DVvVVG~G~aGl~AA~~aa~~------G~~V~vlEk~~~~~~GG~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (466)
T PRK08274 3 SMVDVLVIGGGNAALCAALAAREA------GASVLLLEAAPREWRGGNSRHTRNLRCMHDAPQDVLVGAYPEEEFWQDLL 76 (466)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHC------CCeEEEEeCCCCcCCCcccccCCceeeeCCCchhhccccccHHHHHHHHH
Confidence 468999999999999999999999 999999999874 44433 23331 100 01112222222
Q ss_pred hcCCCe------ee--eccCCcEEEeecCCcccCCC----CCC-CCCc--EEEcHHHHHHHHHHHHHHcCCEEecCceEE
Q 007716 172 QEEAPI------RV--PVSSDKFWFLTKDRAFSLPS----PFS-NRGN--YVISLSQLVRWLGGKAEELGVEIYPGFAAS 236 (592)
Q Consensus 172 ~~~~~~------~~--~~~~~~~~~~~~~~~~~~~~----~~~-~~~~--~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~ 236 (592)
...... .. ....+.+.++.. ..+.+.. ... .... +.-....+...|.+.+++.|++|+++++|+
T Consensus 77 ~~~~~~~~~~~~~~~~~~s~~~~~wl~~-~Gv~~~~~~~~~~~~~~~~~~~~g~g~~l~~~l~~~~~~~gv~i~~~t~v~ 155 (466)
T PRK08274 77 RVTGGRTDEALARLLIRESSDCRDWMRK-HGVRFQPPLSGALHVARTNAFFWGGGKALVNALYRSAERLGVEIRYDAPVT 155 (466)
T ss_pred HhhCCCCCHHHHHHHHHcCHHHHHHHHh-CCceEeecCCCccccCCCCeeecCCHHHHHHHHHHHHHHCCCEEEcCCEEE
Confidence 111000 00 000000001100 0000000 000 0000 111135788899999999999999999999
Q ss_pred EEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcc---cccCcccceeeEE
Q 007716 237 EILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREK---SHAQHQTYALGIK 313 (592)
Q Consensus 237 ~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~vr~~l~~~~~l~~~---~~~~~~~~~~g~~ 313 (592)
+++.++ ++|++|.+.+ .+|+ ...++||.||+|+|..+..+..+.+.++.... ....+...|.|++
T Consensus 156 ~l~~~~-g~v~gv~~~~----~~g~-------~~~i~a~~VIlAtGg~~~n~~~~~~~~~~~~~~~~~~~~~~~tGdG~~ 223 (466)
T PRK08274 156 ALELDD-GRFVGARAGS----AAGG-------AERIRAKAVVLAAGGFESNREWLREAWGQPADNFLVRGTPYNQGDLLK 223 (466)
T ss_pred EEEecC-CeEEEEEEEc----cCCc-------eEEEECCEEEECCCCCCCCHHHHHhhcCCchhhceecCCCCcccHHHH
Confidence 998864 7788887742 2333 25789999999999988765544433432210 1123445566666
Q ss_pred EEEeecC
Q 007716 314 EVWEIDE 320 (592)
Q Consensus 314 ~~~~i~~ 320 (592)
..+++..
T Consensus 224 ma~~~Ga 230 (466)
T PRK08274 224 ALLDAGA 230 (466)
T ss_pred HHHHcCC
Confidence 5544443
No 89
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=99.31 E-value=5.4e-11 Score=133.47 Aligned_cols=167 Identities=20% Similarity=0.245 Sum_probs=98.5
Q ss_pred ccccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcc-cccCccC-------hHHHHHhhHh------
Q 007716 104 ESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI-ISGNVFE-------PRALNELLPQ------ 169 (592)
Q Consensus 104 ~~~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~-~~g~~i~-------~~~l~~ll~~------ 169 (592)
...++||||||||.|||+||+.+++. |++|+||||....++++ .+.+.+. ....+..+.+
T Consensus 26 ~~~~~DVlVIG~G~AGl~AAi~Aa~~------G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~ 99 (617)
T PTZ00139 26 IDHTYDAVVVGAGGAGLRAALGLVEL------GYKTACISKLFPTRSHTVAAQGGINAALGNMTEDDWRWHAYDTVKGSD 99 (617)
T ss_pred cccccCEEEECccHHHHHHHHHHHHc------CCcEEEEeccCCCCCCchhhcCCeeEEecCCCCCCHHHHHHHHHHHhC
Confidence 34579999999999999999999998 99999999987655543 2222221 1111111111
Q ss_pred --------------------h-hhcCCCeeeeccCCcEEE-eecCCcccCCCC-CCCCCcEEE--cHHHHHHHHHHHHHH
Q 007716 170 --------------------W-KQEEAPIRVPVSSDKFWF-LTKDRAFSLPSP-FSNRGNYVI--SLSQLVRWLGGKAEE 224 (592)
Q Consensus 170 --------------------~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~v--~~~~l~~~L~~~a~~ 224 (592)
| ...+.++...... .+.. ........+... .....-+.. ....+...|.+++++
T Consensus 100 ~~~d~~lv~~l~~~s~~~i~~L~~~Gv~f~~~~~g-~~~~~~~gg~s~~~~~~~~~~r~~~~~d~tG~~i~~~L~~~a~~ 178 (617)
T PTZ00139 100 WLGDQDAIQYMCREAPQAVLELESYGLPFSRTKDG-KIYQRAFGGQSLKFGKGGQAYRCAAAADRTGHAMLHTLYGQSLK 178 (617)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhcCCceEeCCCC-cEeecccCcccccccCCCccceeeecCCCcHHHHHHHHHHHHHh
Confidence 1 1112222110000 0000 000000000000 000000011 235888999999999
Q ss_pred cCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCCCcc
Q 007716 225 LGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (592)
Q Consensus 225 ~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~v 287 (592)
.||+|+.++.+++++.+++|+|.||...+ .++|+. ..+.||.||+|||+.+.+
T Consensus 179 ~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~---~~~g~~-------~~i~AkaVVLATGG~~~~ 231 (617)
T PTZ00139 179 YDCNFFIEYFALDLIMDEDGECRGVIAMS---MEDGSI-------HRFRAHYTVIATGGYGRA 231 (617)
T ss_pred CCCEEEeceEEEEEEECCCCEEEEEEEEE---CCCCeE-------EEEECCcEEEeCCCCccc
Confidence 99999999999999985568899987643 123432 578999999999998753
No 90
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.31 E-value=3.4e-11 Score=132.51 Aligned_cols=172 Identities=19% Similarity=0.258 Sum_probs=101.4
Q ss_pred ccccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcc-cccCccC---hH---------HHHHhhHhh
Q 007716 104 ESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI-ISGNVFE---PR---------ALNELLPQW 170 (592)
Q Consensus 104 ~~~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~-~~g~~i~---~~---------~l~~ll~~~ 170 (592)
...++||||||+|.||++||+.+++. |++|+||||.+..|+.. .+++.+. .+ ...+++.++
T Consensus 58 ~~~~~DVvVVG~G~AGl~AAi~Aa~~------Ga~VivlEK~~~~GG~s~~s~Gg~~~~~~~~~~~~g~~d~~~~~~~~~ 131 (506)
T PRK06481 58 LKDKYDIVIVGAGGAGMSAAIEAKDA------GMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIADSNDKFYEET 131 (506)
T ss_pred ccccCCEEEECcCHHHHHHHHHHHHC------CCCEEEEECCCCCCCcccccCCccccCChHHHHhcCCCCCHHHHHHHH
Confidence 34579999999999999999999998 99999999998877653 2332221 11 011222222
Q ss_pred hhcCCCe------ee--eccCCcEEEeecCCcccC-----------CCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEec
Q 007716 171 KQEEAPI------RV--PVSSDKFWFLTKDRAFSL-----------PSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYP 231 (592)
Q Consensus 171 ~~~~~~~------~~--~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~ 231 (592)
....... .. ....+.+.|+.. ..+.+ +........ ......+...|.+.+++.|++|++
T Consensus 132 ~~~~~~~~d~~l~~~~~~~s~~~i~wl~~-~Gv~~~~~~~~~g~~~~r~~~p~~g-~~~g~~l~~~L~~~~~~~gv~i~~ 209 (506)
T PRK06481 132 LKGGGGTNDKALLRYFVDNSASAIDWLDS-MGIKLDNLTITGGMSEKRTHRPHDG-SAVGGYLVDGLLKNVQERKIPLFV 209 (506)
T ss_pred HHhcCCCCCHHHHHHHHhccHHHHHHHHH-cCceEeecccCCCCCCCceeccCCC-CCChHHHHHHHHHHHHHcCCeEEe
Confidence 1110000 00 000000111110 00000 000000000 112346788899999999999999
Q ss_pred CceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcC
Q 007716 232 GFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFK 296 (592)
Q Consensus 232 g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~vr~~l~~~~~ 296 (592)
++.|+++..++ ++|++|.+.. .+|+. .++.||.||+|+|..+... ++++.+.
T Consensus 210 ~t~v~~l~~~~-g~V~Gv~~~~----~~g~~-------~~i~a~~VVlAtGG~~~n~-~m~~~~~ 261 (506)
T PRK06481 210 NADVTKITEKD-GKVTGVKVKI----NGKET-------KTISSKAVVVTTGGFGANK-DMIAKYR 261 (506)
T ss_pred CCeeEEEEecC-CEEEEEEEEe----CCCeE-------EEEecCeEEEeCCCcccCH-HHHHHhC
Confidence 99999998764 7788887653 22221 5799999999999998744 3444443
No 91
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.30 E-value=3e-09 Score=117.18 Aligned_cols=66 Identities=21% Similarity=0.183 Sum_probs=52.9
Q ss_pred EEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCCCc
Q 007716 208 VISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 286 (592)
Q Consensus 208 ~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~ 286 (592)
.++...+...|...+++.|++++.+++|+++..++ + .++|.+.+ ..|+. .+++||.||.|+|.++.
T Consensus 151 ~vd~~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~-~-~~~v~~~~----~~g~~-------~~i~a~~VVnAaG~wa~ 216 (502)
T PRK13369 151 WVDDARLVVLNALDAAERGATILTRTRCVSARREG-G-LWRVETRD----ADGET-------RTVRARALVNAAGPWVT 216 (502)
T ss_pred eecHHHHHHHHHHHHHHCCCEEecCcEEEEEEEcC-C-EEEEEEEe----CCCCE-------EEEEecEEEECCCccHH
Confidence 46789999999999999999999999999998765 3 34677655 11322 57999999999999974
No 92
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=99.30 E-value=5.6e-11 Score=133.42 Aligned_cols=166 Identities=20% Similarity=0.263 Sum_probs=97.9
Q ss_pred cccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcc-cccCccC-------hHHHHHhhHhhhh----
Q 007716 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI-ISGNVFE-------PRALNELLPQWKQ---- 172 (592)
Q Consensus 105 ~~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~-~~g~~i~-------~~~l~~ll~~~~~---- 172 (592)
.+++||||||+|.|||+||+.+++. |++|+||||....++++ .+++.|. ....+..+.+...
T Consensus 48 ~~~~DVlVIG~G~AGl~AAl~Aae~------G~~VilveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~Dt~~~g~~ 121 (635)
T PLN00128 48 DHTYDAVVVGAGGAGLRAAIGLSEH------GFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDW 121 (635)
T ss_pred eeecCEEEECccHHHHHHHHHHHhc------CCcEEEEEcCCCCCCchHHhhcCceeecCCCCCCCHHHHHHHHHHhhCC
Confidence 3579999999999999999999998 99999999997665543 2222221 1111111111100
Q ss_pred -----------------------cCCCeeeeccCCcEEEee-cCCcccCCCCC-CCCCcEE--EcHHHHHHHHHHHHHHc
Q 007716 173 -----------------------EEAPIRVPVSSDKFWFLT-KDRAFSLPSPF-SNRGNYV--ISLSQLVRWLGGKAEEL 225 (592)
Q Consensus 173 -----------------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~--v~~~~l~~~L~~~a~~~ 225 (592)
.+.++...... .+.... ......++... .....+. .....+...|.+.+++.
T Consensus 122 ~~d~~lv~~l~~~s~~~i~~L~~~Gv~F~~~~~g-~~~~~~~gg~s~~~~~~g~~~r~~~~~d~tG~~i~~~L~~~a~~~ 200 (635)
T PLN00128 122 LGDQDAIQYMCREAPKAVIELENYGLPFSRTEDG-KIYQRAFGGQSLDFGKGGQAYRCACAADRTGHAMLHTLYGQAMKH 200 (635)
T ss_pred CCCHHHHHHHHHhHHHHHHHHHhCCCccccCCCC-ceeeccccccccccCCCcceeeeeccCCCCHHHHHHHHHHHHHhC
Confidence 11111100000 000000 00000000000 0000000 12457889999999989
Q ss_pred CCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCCCcc
Q 007716 226 GVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (592)
Q Consensus 226 Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~v 287 (592)
||+|+.++.++++..+++|+|.||...+ .++|+. ..+.||.||+|||+.+.+
T Consensus 201 gv~i~~~~~~~~Li~~~~g~v~Gv~~~~---~~~g~~-------~~i~AkaVILATGG~g~~ 252 (635)
T PLN00128 201 NTQFFVEYFALDLIMDSDGACQGVIALN---MEDGTL-------HRFRAHSTILATGGYGRA 252 (635)
T ss_pred CCEEEEeeEEEEEEEcCCCEEEEEEEEE---cCCCeE-------EEEEcCeEEECCCCCccc
Confidence 9999999999999887568898987643 123443 678999999999999863
No 93
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=99.29 E-value=7.9e-12 Score=133.57 Aligned_cols=143 Identities=25% Similarity=0.404 Sum_probs=91.3
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHh---hHhhhhcCCCeeeecc
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNEL---LPQWKQEEAPIRVPVS 182 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l---l~~~~~~~~~~~~~~~ 182 (592)
++||||||||||||..||++++++ |.+|+|+|+...+|+.|++-+||+.++|.+. +..+.....
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~~------G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~------- 69 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQL------GLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAK------- 69 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHHhC------CCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhccc-------
Confidence 579999999999999999999999 9999999999789999999999999998544 233332110
Q ss_pred CCcEEEeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCc
Q 007716 183 SDKFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSK 262 (592)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~ 262 (592)
.+.+......+++...+..... ++ ..+...+...+++.||+++.|+.. +.+++.| .|... +
T Consensus 70 --~~Gi~~~~~~id~~~~~~~k~~-v~--~~~~~~~~~l~~~~~V~vi~G~a~----f~~~~~v-~V~~~-------~-- 130 (454)
T COG1249 70 --EYGISAEVPKIDFEKLLARKDK-VV--RLLTGGVEGLLKKNGVDVIRGEAR----FVDPHTV-EVTGE-------D-- 130 (454)
T ss_pred --ccceecCCCCcCHHHHHHHHHH-HH--HHHhhhHHHHHhhCCCEEEEEEEE----ECCCCEE-EEcCC-------C--
Confidence 0001001111222211111111 11 223333444455579999998755 3333433 33321 1
Q ss_pred ccccccceEEEcCEEEEecCCCCc
Q 007716 263 KENFQRGVELRGRITLLAEGCRGS 286 (592)
Q Consensus 263 ~~~f~~g~~i~a~~vI~A~G~~s~ 286 (592)
..+++||.+|+|||+++.
T Consensus 131 ------~~~~~a~~iiIATGS~p~ 148 (454)
T COG1249 131 ------KETITADNIIIATGSRPR 148 (454)
T ss_pred ------ceEEEeCEEEEcCCCCCc
Confidence 379999999999999876
No 94
>PRK08275 putative oxidoreductase; Provisional
Probab=99.29 E-value=3.7e-11 Score=133.62 Aligned_cols=170 Identities=24% Similarity=0.320 Sum_probs=96.0
Q ss_pred cccccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccc-c-CccC----h--HHHHHhhHhhhhcC
Q 007716 103 RESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIIS-G-NVFE----P--RALNELLPQWKQEE 174 (592)
Q Consensus 103 ~~~~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~-g-~~i~----~--~~l~~ll~~~~~~~ 174 (592)
.+.+++||||||||.|||+||+.+++. ++|.+|+||||....++...+ + +.+. + ......+.+.....
T Consensus 5 ~~~~~~DVlVIG~G~AGl~AAi~aa~~----g~g~~VilveK~~~~~~g~~~~~~~g~~~~~~~~~d~~~~~~~d~~~~~ 80 (554)
T PRK08275 5 TQEVETDILVIGGGTAGPMAAIKAKER----NPALRVLLLEKANVKRSGAISMGMDGLNNAVIPGHATPEQYTKEITIAN 80 (554)
T ss_pred ceeEecCEEEECcCHHHHHHHHHHHHh----CCCCeEEEEeCCCCCCCCchhhhhhhHhhhhccCCCCHHHHHHHHHHhc
Confidence 345679999999999999999999975 236899999998763332211 1 1110 0 11111111110000
Q ss_pred CCe----------------eeeccCCcEEEee-cCCcccCCCCCCCCCcEE---EcHHHHHHHHHHHHHHcCCEEecCce
Q 007716 175 API----------------RVPVSSDKFWFLT-KDRAFSLPSPFSNRGNYV---ISLSQLVRWLGGKAEELGVEIYPGFA 234 (592)
Q Consensus 175 ~~~----------------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---v~~~~l~~~L~~~a~~~Gv~i~~g~~ 234 (592)
... ........+.+.. ....+.... ....+.+. -....+.+.|.+++++.||+|++++.
T Consensus 81 ~~~~d~~~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~-~~~~~~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~ 159 (554)
T PRK08275 81 DGIVDQKAVYAYAEHSFETIQQLDRWGVKFEKDETGDYAVKK-VHHMGSYVLPMPEGHDIKKVLYRQLKRARVLITNRIM 159 (554)
T ss_pred CCCccHHHHHHHHHhhHHHHHHHHHCCCeeEeCCCCCEeeec-ccccCcccccCCChHHHHHHHHHHHHHCCCEEEcceE
Confidence 000 0000000111100 000010000 00011111 12347889999999999999999999
Q ss_pred EEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCCCcc
Q 007716 235 ASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (592)
Q Consensus 235 v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~v 287 (592)
+++++.++++++.||...+ ..+|+. ..+.||.||+|+|+.+.+
T Consensus 160 v~~Li~~~~g~v~Gv~~~~---~~~g~~-------~~i~Ak~VIlATGG~~~~ 202 (554)
T PRK08275 160 ATRLLTDADGRVAGALGFD---CRTGEF-------LVIRAKAVILCCGAAGRL 202 (554)
T ss_pred EEEEEEcCCCeEEEEEEEe---cCCCcE-------EEEECCEEEECCCCcccc
Confidence 9999987557888887543 123332 468999999999998764
No 95
>PRK07121 hypothetical protein; Validated
Probab=99.29 E-value=7.4e-11 Score=129.65 Aligned_cols=73 Identities=25% Similarity=0.408 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEc-CEEEEecCCCCcchH
Q 007716 211 LSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRG-RITLLAEGCRGSLSE 289 (592)
Q Consensus 211 ~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a-~~vI~A~G~~s~vr~ 289 (592)
...+...|.+.+++.|++|++++.++++..+++|+|++|...+ +|+. ..++| |.||+|+|..+. .+
T Consensus 176 g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~-----~~~~-------~~i~a~k~VVlAtGg~~~-N~ 242 (492)
T PRK07121 176 GAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARR-----YGET-------VAIRARKGVVLAAGGFAM-NR 242 (492)
T ss_pred hHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEe-----CCcE-------EEEEeCCEEEECCCCcCc-CH
Confidence 4578889999999999999999999999987667898988743 2221 57899 999999999987 34
Q ss_pred HHHHHcC
Q 007716 290 KLIKNFK 296 (592)
Q Consensus 290 ~l~~~~~ 296 (592)
+|++.+.
T Consensus 243 em~~~~~ 249 (492)
T PRK07121 243 EMVARYA 249 (492)
T ss_pred HHHHHhC
Confidence 4544443
No 96
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.29 E-value=6.7e-11 Score=132.08 Aligned_cols=165 Identities=18% Similarity=0.217 Sum_probs=97.1
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcc-cccCcc----C---hHHHHHhhHhhhh-----
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI-ISGNVF----E---PRALNELLPQWKQ----- 172 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~-~~g~~i----~---~~~l~~ll~~~~~----- 172 (592)
.++||||||+|.|||+||+.+++. |++|+|+||....++++ .+++.+ . ....+..+.++..
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~Aa~~------G~~V~lleK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~ 79 (588)
T PRK08958 6 REFDAVVIGAGGAGMRAALQISQS------GQSCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYI 79 (588)
T ss_pred cccCEEEECccHHHHHHHHHHHHc------CCcEEEEEccCCCCCccHHhhhhHhhhcCCCCCCCHHHHHHHHHHHhCCC
Confidence 468999999999999999999998 99999999987655433 222222 1 1111111111111
Q ss_pred ----------------------cCCCeeeeccCCcEEEe-ecCCcccCCCCCCCCCcEEE--cHHHHHHHHHHHHHHcCC
Q 007716 173 ----------------------EEAPIRVPVSSDKFWFL-TKDRAFSLPSPFSNRGNYVI--SLSQLVRWLGGKAEELGV 227 (592)
Q Consensus 173 ----------------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v--~~~~l~~~L~~~a~~~Gv 227 (592)
.+.++...... .+... .......++........+.. ....|...|.+++++.||
T Consensus 80 ~d~~~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g-~~~~~~~gg~~~~~~~~~~~r~~~~~~~~G~~i~~~L~~~~~~~gi 158 (588)
T PRK08958 80 GDQDAIEYMCKTGPEAILELEHMGLPFSRLDDG-RIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHT 158 (588)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCcccCCCC-ceeecccccccccccccccceeEecCCCCHHHHHHHHHHHhhhcCC
Confidence 11111100000 00000 00000000000000000111 235788899999988999
Q ss_pred EEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCCCcc
Q 007716 228 EIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (592)
Q Consensus 228 ~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~v 287 (592)
+|+.++.+++++.+++|+|+||...+ .++|+. ..+.|+.||+|||+.+.+
T Consensus 159 ~i~~~~~~~~Li~~~~g~v~Gv~~~~---~~~g~~-------~~i~AkaVILATGG~~~~ 208 (588)
T PRK08958 159 TIFSEWYALDLVKNQDGAVVGCTAIC---IETGEV-------VYFKARATVLATGGAGRI 208 (588)
T ss_pred EEEeCcEEEEEEECCCCEEEEEEEEE---cCCCcE-------EEEEcCeEEECCCCcccc
Confidence 99999999999987668999998643 133432 578999999999999864
No 97
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=99.28 E-value=7.8e-12 Score=125.24 Aligned_cols=146 Identities=25% Similarity=0.382 Sum_probs=92.2
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCc
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDK 185 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~ 185 (592)
.+|||+|||+||+|..||+.++|+ |++++++||+..+|++|++.+||++++|...--.+...... ......
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQl------GlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~---~~~~rG 108 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQL------GLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHE---DFASRG 108 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHh------cceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhh---HHHhcC
Confidence 479999999999999999999999 99999999999999999999999999884322112111000 000000
Q ss_pred EEEeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccc
Q 007716 186 FWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKEN 265 (592)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~ 265 (592)
+.. ....++++..+....+.+ ..|..-+....++.+|+++.|+.- ..++ ..| .|... ||+.
T Consensus 109 i~v--s~~~~dl~~~~~~k~~~v---k~Lt~gi~~lfkknkV~~~kG~gs---f~~p-~~V-~v~k~------dg~~--- 169 (506)
T KOG1335|consen 109 IDV--SSVSLDLQAMMKAKDNAV---KQLTGGIENLFKKNKVTYVKGFGS---FLDP-NKV-SVKKI------DGED--- 169 (506)
T ss_pred ccc--cceecCHHHHHHHHHHHH---HHHhhHHHHHhhhcCeEEEeeeEe---ecCC-ceE-EEecc------CCCc---
Confidence 000 112223332222222222 344445555556678999988755 2333 223 34433 3443
Q ss_pred cccceEEEcCEEEEecCC
Q 007716 266 FQRGVELRGRITLLAEGC 283 (592)
Q Consensus 266 f~~g~~i~a~~vI~A~G~ 283 (592)
..++||.+|+|||.
T Consensus 170 ----~ii~aKnIiiATGS 183 (506)
T KOG1335|consen 170 ----QIIKAKNIIIATGS 183 (506)
T ss_pred ----eEEeeeeEEEEeCC
Confidence 78899999999996
No 98
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.28 E-value=1.1e-10 Score=130.69 Aligned_cols=165 Identities=21% Similarity=0.273 Sum_probs=96.6
Q ss_pred cccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcc-cccCcc-------ChHHHHHhhHh-------
Q 007716 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI-ISGNVF-------EPRALNELLPQ------- 169 (592)
Q Consensus 105 ~~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~-~~g~~i-------~~~~l~~ll~~------- 169 (592)
.+++||||||+|.|||+||+.+++. |++|+||||....++++ .+.+.+ +....+..+.+
T Consensus 10 ~~~~DVlVIG~G~AGl~AAi~Aa~~------G~~V~vleK~~~~~g~t~~a~Ggi~~~~~~~~~ds~~~~~~dt~~~g~~ 83 (591)
T PRK07057 10 RRKFDVVIVGAGGSGMRASLQLARA------GLSVAVLSKVFPTRSHTVAAQGGIGASLGNMSEDNWHYHFYDTIKGSDW 83 (591)
T ss_pred cccCCEEEECccHHHHHHHHHHHHC------CCcEEEEeccCCCCCCchhccCCcccccccccccChhHhHHHHHHhcCC
Confidence 4579999999999999999999998 99999999986544433 222221 11111111111
Q ss_pred -------------------h-hhcCCCeeeeccCCc-EEEee-cCCcccCCCCCCCCCcEE--EcHHHHHHHHHHHHHHc
Q 007716 170 -------------------W-KQEEAPIRVPVSSDK-FWFLT-KDRAFSLPSPFSNRGNYV--ISLSQLVRWLGGKAEEL 225 (592)
Q Consensus 170 -------------------~-~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~--v~~~~l~~~L~~~a~~~ 225 (592)
| ...+.++... .+. +.... .......+........+. -....|...|.+++.+.
T Consensus 84 ~~d~~~v~~~~~~a~~~i~~L~~~Gv~f~~~--~~G~~~~~~~gg~s~~~~~~~~~r~~~~~~~tG~~l~~~L~~~~~~~ 161 (591)
T PRK07057 84 LGDQDAIEFMCREAPNVVYELEHFGMPFDRN--ADGTIYQRPFGGHTANYGEKPVQRACAAADRTGHALLHTLYQQNVAA 161 (591)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhcCCcceeC--CCCcEeeeccCCccccccCCccceeeecCCCChHHHHHHHHHHHHhc
Confidence 1 0111111110 000 10000 000000000000000010 12357888999999999
Q ss_pred CCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCCCcc
Q 007716 226 GVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (592)
Q Consensus 226 Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~v 287 (592)
|++++.++.+++++.+++|+|.||...+ ..+|+. ..+.||.||+|+|+.+.+
T Consensus 162 gi~i~~~~~~~~Li~~~~g~v~Gv~~~~---~~~g~~-------~~i~AkaVILATGG~~~~ 213 (591)
T PRK07057 162 KTQFFVEWMALDLIRDADGDVLGVTALE---METGDV-------YILEAKTTLFATGGAGRI 213 (591)
T ss_pred CCEEEeCcEEEEEEEcCCCeEEEEEEEE---cCCCeE-------EEEECCeEEECCCCcccc
Confidence 9999999999999987668888988743 123322 578999999999998864
No 99
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.28 E-value=1e-10 Score=130.99 Aligned_cols=65 Identities=18% Similarity=0.308 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCCCc
Q 007716 212 SQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 286 (592)
Q Consensus 212 ~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~ 286 (592)
..+...|.+.+++.||+|++++.+++++.+++|+|+||...+ .++|+. ..+.|+.||+|||+.+.
T Consensus 149 ~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~---~~~g~~-------~~i~AkaVVLATGG~~~ 213 (598)
T PRK09078 149 HAILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWN---LDDGTL-------HRFRAHMVVLATGGYGR 213 (598)
T ss_pred HHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEE---CCCCcE-------EEEEcCEEEECCCCCcc
Confidence 578889999999999999999999999987667899987643 123432 57899999999999885
No 100
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.28 E-value=9.4e-11 Score=129.91 Aligned_cols=166 Identities=25% Similarity=0.271 Sum_probs=97.1
Q ss_pred ccccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcc-cccCccC-----hHHHHHhhHhhh------
Q 007716 104 ESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI-ISGNVFE-----PRALNELLPQWK------ 171 (592)
Q Consensus 104 ~~~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~-~~g~~i~-----~~~l~~ll~~~~------ 171 (592)
..+++||||||+|.|||+||+.+++. |.+|+||||....++.+ .+++.+. ....+..+.++.
T Consensus 13 ~~~~~DVlVIG~G~AGl~AAi~aae~------G~~VilleK~~~~~g~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g~ 86 (541)
T PRK07804 13 WRDAADVVVVGSGVAGLTAALAARRA------GRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVADTLVAGAGL 86 (541)
T ss_pred cccccCEEEECccHHHHHHHHHHHHc------CCeEEEEEccCCCCCchhhhccceeeccCCCCCHHHHHHHHHHhcCCC
Confidence 34679999999999999999999998 99999999988765433 2222221 011111111111
Q ss_pred --------------------h-cCCCeeeeccCCcEEEeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEe
Q 007716 172 --------------------Q-EEAPIRVPVSSDKFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIY 230 (592)
Q Consensus 172 --------------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~ 230 (592)
. .+.++... .+.-...........+......+. .....+.+.|.+++++.||+|+
T Consensus 87 ~d~~~v~~~~~~s~~~i~~L~~~Gv~f~~~--~~G~~~~~~~~g~~~~r~~~~~~d--~~G~~i~~~L~~~~~~~gV~i~ 162 (541)
T PRK07804 87 CDPDAVRSLVAEGPRAVRELVALGARFDES--PDGRWALTREGGHSRRRIVHAGGD--ATGAEVQRALDAAVRADPLDIR 162 (541)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCccccC--CCCcEeeeccCCeecCeeEecCCC--CCHHHHHHHHHHHHHhCCCEEE
Confidence 0 11111100 000000000000000000000000 1235788899999999999999
Q ss_pred cCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccc-eEEEcCEEEEecCCCCcc
Q 007716 231 PGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRG-VELRGRITLLAEGCRGSL 287 (592)
Q Consensus 231 ~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g-~~i~a~~vI~A~G~~s~v 287 (592)
.++.|++++.+++|+|.+|.+.+.. .|.. ++ ..+.|+.||+|||+.+.+
T Consensus 163 ~~~~v~~Li~~~~g~v~Gv~~~~~~---~~~~-----~g~~~i~Ak~VIlATGG~~~~ 212 (541)
T PRK07804 163 EHALALDLLTDGTGAVAGVTLHVLG---EGSP-----DGVGAVHAPAVVLATGGLGQL 212 (541)
T ss_pred ECeEeeeeEEcCCCeEEEEEEEecc---CCCC-----CcEEEEEcCeEEECCCCCCCC
Confidence 9999999998766788888765311 0100 12 478999999999999865
No 101
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=99.27 E-value=3.5e-11 Score=131.64 Aligned_cols=149 Identities=17% Similarity=0.277 Sum_probs=91.2
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCC-CCCCccc--ccCccChHHHHHhhHhhhhcCCCeeeecc
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA-EVGAHII--SGNVFEPRALNELLPQWKQEEAPIRVPVS 182 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~-~~g~~~~--~g~~i~~~~l~~ll~~~~~~~~~~~~~~~ 182 (592)
.+|||||||||+||++||+.+++. |.+|+|+|+.. .+|.-.. +-+.+....+ ..+....+..+....+
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~------G~kV~LiE~~~d~iG~m~CnpsiGG~akg~l---vrEidalGg~~g~~~d 73 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARM------GAKTLLLTHNLDTIGQMSCNPAIGGIAKGHL---VREIDALGGEMGKAID 73 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHc------CCcEEEEecccccccccCCccccccchhhHH---HHHHHhcCCHHHHHHh
Confidence 469999999999999999999999 99999999874 4553111 0111111111 1111111100000000
Q ss_pred --CCcEEEeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHc-CCEEecCceEEEEEEcCCCcEEEEEeccCcccCC
Q 007716 183 --SDKFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGIAKD 259 (592)
Q Consensus 183 --~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~-Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~ 259 (592)
...+..+....+ +........+++..+...|.+.+++. |++++ ...|+++..++ +.|.+|.+.+
T Consensus 74 ~~giq~r~ln~skG-----pAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~e~-grV~GV~t~d------ 140 (618)
T PRK05192 74 KTGIQFRMLNTSKG-----PAVRALRAQADRKLYRAAMREILENQPNLDLF-QGEVEDLIVEN-GRVVGVVTQD------ 140 (618)
T ss_pred hccCceeecccCCC-----CceeCcHHhcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEecC-CEEEEEEECC------
Confidence 001111111100 00001123577888889998888876 79986 45688887765 6788899876
Q ss_pred CCcccccccceEEEcCEEEEecCCCC
Q 007716 260 GSKKENFQRGVELRGRITLLAEGCRG 285 (592)
Q Consensus 260 G~~~~~f~~g~~i~a~~vI~A~G~~s 285 (592)
|..+.|+.||+|||.++
T Consensus 141 ---------G~~I~Ak~VIlATGTFL 157 (618)
T PRK05192 141 ---------GLEFRAKAVVLTTGTFL 157 (618)
T ss_pred ---------CCEEECCEEEEeeCcch
Confidence 67899999999999764
No 102
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.27 E-value=1.2e-11 Score=135.11 Aligned_cols=147 Identities=24% Similarity=0.349 Sum_probs=87.8
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCc
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDK 185 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~ 185 (592)
.+|||+||||||+|+++|..|++. |++|+|+|+.+.+|+.|++-+|++.+.|.+....+...... ....
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~------G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~-----~~~g 71 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADL------GLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKAL-----AEHG 71 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHC------CCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhh-----hhcC
Confidence 369999999999999999999999 99999999987899999999999998875543322211000 0000
Q ss_pred EEEeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccc
Q 007716 186 FWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKEN 265 (592)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~ 265 (592)
+.+ ....+++...+..... + ...+...+...+++.||+++.+... ..++ ..+ .|...+ |+.
T Consensus 72 ~~~--~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~gV~~~~g~a~---~~~~-~~v-~v~~~~------g~~--- 132 (471)
T PRK06467 72 IVF--GEPKIDIDKMRARKEK-V--VKQLTGGLAGMAKGRKVTVVNGLGK---FTGG-NTL-EVTGED------GKT--- 132 (471)
T ss_pred ccc--CCCCcCHHHHHHHHHH-H--HHHHHHHHHHHHHhCCCEEEEEEEE---EccC-CEE-EEecCC------Cce---
Confidence 000 0001111100000000 0 0112223344556679999988643 1222 322 454332 211
Q ss_pred cccceEEEcCEEEEecCCCCc
Q 007716 266 FQRGVELRGRITLLAEGCRGS 286 (592)
Q Consensus 266 f~~g~~i~a~~vI~A~G~~s~ 286 (592)
.++++|.||+|||+++.
T Consensus 133 ----~~~~~d~lViATGs~p~ 149 (471)
T PRK06467 133 ----TVIEFDNAIIAAGSRPI 149 (471)
T ss_pred ----EEEEcCEEEEeCCCCCC
Confidence 57999999999998764
No 103
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=99.27 E-value=8.5e-12 Score=135.36 Aligned_cols=142 Identities=20% Similarity=0.269 Sum_probs=87.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcE
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~ 186 (592)
+|||+||||||||++||+.++++ |++|+|+|+. .+|+.|++.+|++.+.|.+........... ..+
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~------G~~V~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~-------~~~ 67 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANH------GAKVAIAEEP-RVGGTCVIRGCVPKKLMVYGSTFGGEFEDA-------AGY 67 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhC------CCcEEEEecC-ccCceeecCCcCchHHHHHHHHHHHHHhhh-------Hhc
Confidence 69999999999999999999999 9999999985 689999999999999874432222111000 000
Q ss_pred EEeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCccccc
Q 007716 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (592)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f 266 (592)
.+......+++...+..... ....+.+.+.+++++.||+++.+ ++..+. . ..+ .|. .+
T Consensus 68 g~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~gV~~~~g-~~~~v~--~-~~v-~v~-~~------------- 125 (446)
T TIGR01424 68 GWTVGKARFDWKKLLQKKDD---EIARLSGLYKRLLANAGVELLEG-RARLVG--P-NTV-EVL-QD------------- 125 (446)
T ss_pred CcCCCCCCcCHHHHHHHHHH---HHHHHHHHHHHHHHhCCcEEEEE-EEEEec--C-CEE-EEe-cC-------------
Confidence 00000001111100000000 01344556667777889999887 454432 2 222 232 22
Q ss_pred ccceEEEcCEEEEecCCCCc
Q 007716 267 QRGVELRGRITLLAEGCRGS 286 (592)
Q Consensus 267 ~~g~~i~a~~vI~A~G~~s~ 286 (592)
|.++++|.||+|||+++.
T Consensus 126 --g~~~~~d~lIiATGs~p~ 143 (446)
T TIGR01424 126 --GTTYTAKKILIAVGGRPQ 143 (446)
T ss_pred --CeEEEcCEEEEecCCcCC
Confidence 468999999999998764
No 104
>PTZ00058 glutathione reductase; Provisional
Probab=99.26 E-value=7.1e-12 Score=138.32 Aligned_cols=53 Identities=26% Similarity=0.503 Sum_probs=49.2
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHH
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNE 165 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ 165 (592)
++|||+||||||||++||+.+++. |.+|+||||. .+||.|++-+|++.+.|.+
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~------G~~ValIEk~-~~GGtCln~GCiPsK~l~~ 99 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARN------KAKVALVEKD-YLGGTCVNVGCVPKKIMFN 99 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHc------CCeEEEEecc-cccccccccCCCCCchhhh
Confidence 679999999999999999999999 9999999986 6899999999999988744
No 105
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.26 E-value=8.9e-12 Score=120.20 Aligned_cols=137 Identities=28% Similarity=0.346 Sum_probs=79.6
Q ss_pred EEECCCHHHHHHHHHHHHhhhhcCCCCc-EEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcEEEe
Q 007716 111 VIVGAGPAGLSAAIRLKQLCREKNVDLS-VCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFWFL 189 (592)
Q Consensus 111 vIVGaG~aGl~aA~~La~~~~~~~~g~~-V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~ 189 (592)
+||||||+||++|+.|.+. |++ |+|||+.+.+|+....-.. ......+.. .. ..+.+.
T Consensus 1 ~IIGaG~aGl~~a~~l~~~------g~~~v~v~e~~~~~Gg~w~~~~~------------~~~~~~~~~--~~-~~~~~~ 59 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLER------GIDPVVVLERNDRPGGVWRRYYS------------YTRLHSPSF--FS-SDFGLP 59 (203)
T ss_dssp EEE--SHHHHHHHHHHHHT------T---EEEEESSSSSTTHHHCH-T------------TTT-BSSSC--CT-GGSS--
T ss_pred CEECcCHHHHHHHHHHHhC------CCCcEEEEeCCCCCCCeeEEeCC------------CCccccCcc--cc-ccccCC
Confidence 6999999999999999999 999 9999999988874321000 000000000 00 000000
Q ss_pred ecCCcccCCC-CCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCccccccc
Q 007716 190 TKDRAFSLPS-PFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQR 268 (592)
Q Consensus 190 ~~~~~~~~~~-~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~ 268 (592)
.-..+.... +.........++.++.++|.+.+++.+++++++++|+++..++++ +.|++.+
T Consensus 60 -~~~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~--w~v~~~~--------------- 121 (203)
T PF13738_consen 60 -DFESFSFDDSPEWRWPHDFPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDG--WTVTTRD--------------- 121 (203)
T ss_dssp -CCCHSCHHHHHHHHHSBSSEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTT--EEEEETT---------------
T ss_pred -cccccccccCCCCCCCcccCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccE--EEEEEEe---------------
Confidence 000000000 000001122677899999999999999999999999999999865 5688876
Q ss_pred ceEEEcCEEEEecCCCCc
Q 007716 269 GVELRGRITLLAEGCRGS 286 (592)
Q Consensus 269 g~~i~a~~vI~A~G~~s~ 286 (592)
+.+++||.||+|+|..+.
T Consensus 122 ~~~~~a~~VVlAtG~~~~ 139 (203)
T PF13738_consen 122 GRTIRADRVVLATGHYSH 139 (203)
T ss_dssp S-EEEEEEEEE---SSCS
T ss_pred cceeeeeeEEEeeeccCC
Confidence 468999999999997654
No 106
>PLN02546 glutathione reductase
Probab=99.26 E-value=3.6e-11 Score=132.82 Aligned_cols=141 Identities=18% Similarity=0.241 Sum_probs=89.9
Q ss_pred cccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcC---------CCCCCCcccccCccChHHHHHhh---Hhhhh
Q 007716 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEK---------GAEVGAHIISGNVFEPRALNELL---PQWKQ 172 (592)
Q Consensus 105 ~~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk---------~~~~g~~~~~g~~i~~~~l~~ll---~~~~~ 172 (592)
..+|||+||||||+|+.||+.|+++ |++|+|+|+ ...+||.|++-+|++.+.|.+.- ..+..
T Consensus 77 ~~~yDvvVIG~GpaG~~aA~~aa~~------G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~ 150 (558)
T PLN02546 77 HYDFDLFTIGAGSGGVRASRFASNF------GASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEE 150 (558)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHC------CCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHh
Confidence 3479999999999999999999999 999999996 24589999999999999885432 22211
Q ss_pred cCCCeeeeccCCcEEEeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEec
Q 007716 173 EEAPIRVPVSSDKFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTN 252 (592)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~ 252 (592)
. ..+.... .....+++...+..... ...++..++.+.+++.||+++.|... .+ +. .. |.+.
T Consensus 151 ~-~~~g~~~--------~~~~~~d~~~~~~~k~~---~~~~l~~~~~~~l~~~gV~~i~G~a~-~v--d~-~~---V~v~ 211 (558)
T PLN02546 151 S-RGFGWKY--------ETEPKHDWNTLIANKNA---ELQRLTGIYKNILKNAGVTLIEGRGK-IV--DP-HT---VDVD 211 (558)
T ss_pred h-hhcCccc--------CCCCCCCHHHHHHHHHH---HHHHHHHHHHHHHHhCCcEEEEeEEE-Ec--cC-CE---EEEC
Confidence 0 0000000 00011222111110000 11445667777788889999987532 22 22 22 3332
Q ss_pred cCcccCCCCcccccccceEEEcCEEEEecCCCCc
Q 007716 253 DMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 286 (592)
Q Consensus 253 d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~ 286 (592)
|.++.+|.||+|+|++..
T Consensus 212 ----------------G~~~~~D~LVIATGs~p~ 229 (558)
T PLN02546 212 ----------------GKLYTARNILIAVGGRPF 229 (558)
T ss_pred ----------------CEEEECCEEEEeCCCCCC
Confidence 468999999999999874
No 107
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.25 E-value=1.1e-10 Score=129.97 Aligned_cols=166 Identities=21% Similarity=0.258 Sum_probs=95.6
Q ss_pred cccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcc-cccCccC--------h-HHHHHhhHhhhhcC
Q 007716 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI-ISGNVFE--------P-RALNELLPQWKQEE 174 (592)
Q Consensus 105 ~~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~-~~g~~i~--------~-~~l~~ll~~~~~~~ 174 (592)
.+++||||||+|.|||+||+.+++. |++|+||||....++++ .+++.+. + ...+..+.+....+
T Consensus 3 ~~~~DVvVVG~G~AGl~AAl~Aae~------G~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~~~~~Ds~e~~~~d~~~~g 76 (566)
T PRK06452 3 KIEYDAVVIGGGLAGLMSAHEIASA------GFKVAVISKVFPTRSHSAAAEGGIAAYIPGNSDPNDNPDYMTYDTVKGG 76 (566)
T ss_pred cccCcEEEECccHHHHHHHHHHHHC------CCcEEEEEccCCCCCcchhhccchhhhccccCCCcccHHHHHHHHHHhh
Confidence 3579999999999999999999998 99999999987655543 2222221 0 11111111111000
Q ss_pred CCee------e----------eccCCcEEEee-cCCcccCCC-C-C-CCCCcEEE--cHHHHHHHHHHHHHHcCCEEecC
Q 007716 175 APIR------V----------PVSSDKFWFLT-KDRAFSLPS-P-F-SNRGNYVI--SLSQLVRWLGGKAEELGVEIYPG 232 (592)
Q Consensus 175 ~~~~------~----------~~~~~~~~~~~-~~~~~~~~~-~-~-~~~~~~~v--~~~~l~~~L~~~a~~~Gv~i~~g 232 (592)
..+. . ......+.|.. ....+.... . . .....+.. ....+...|.+.+++.||+++++
T Consensus 77 ~~~~d~~~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~ 156 (566)
T PRK06452 77 DYLVDQDAAELLSNKSGEIVMLLERWGALFNRQPDGRVAVRYFGGQTYPRTRFVGDKTGMALLHTLFERTSGLNVDFYNE 156 (566)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHCCCccccCCCCcEeccCCcCccCCeeEecCCCCHHHHHHHHHHHHHhCCCEEEeC
Confidence 0000 0 00000000000 000000000 0 0 00000111 23568888999888889999999
Q ss_pred ceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCCCcc
Q 007716 233 FAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (592)
Q Consensus 233 ~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~v 287 (592)
+.+++++.++ |+|+||...+. .+|+. ..+.||.||+|||+.+.+
T Consensus 157 ~~~~~Li~~~-g~v~Gv~~~~~---~~g~~-------~~i~AkaVVLATGG~~~l 200 (566)
T PRK06452 157 WFSLDLVTDN-KKVVGIVAMQM---KTLTP-------FFFKTKAVVLATGGMGML 200 (566)
T ss_pred cEEEEEEEEC-CEEEEEEEEEC---CCCeE-------EEEEeCeEEECCCccccc
Confidence 9999999874 89999987641 22322 578999999999999853
No 108
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.24 E-value=1.1e-10 Score=131.50 Aligned_cols=62 Identities=16% Similarity=0.198 Sum_probs=49.1
Q ss_pred HHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCCCcc
Q 007716 215 VRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (592)
Q Consensus 215 ~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~v 287 (592)
.+.|.+.+++.||+|++++.+++++.++ ++|+||.+.+ ..+|.. ..+.||.||+|||+.+.+
T Consensus 173 ~~~L~~~~~~~gV~i~~~t~v~~Li~d~-g~V~GV~~~~---~~~g~~-------~~i~AkaVVLATGG~g~~ 234 (640)
T PRK07573 173 YQALSRQIAAGTVKMYTRTEMLDLVVVD-GRARGIVARN---LVTGEI-------ERHTADAVVLATGGYGNV 234 (640)
T ss_pred HHHHHHHHHhcCCEEEeceEEEEEEEeC-CEEEEEEEEE---CCCCcE-------EEEECCEEEECCCCcccC
Confidence 3667777888899999999999998865 7899998754 123332 578999999999998864
No 109
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=99.24 E-value=1.8e-11 Score=132.74 Aligned_cols=140 Identities=19% Similarity=0.311 Sum_probs=86.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcE
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~ 186 (592)
+|||+||||||||++||+.|++. |++|+|+||. .+|+.|++-+|++.+.+.+.......... ...+
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~------G~~V~liE~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~-------~~~~ 67 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEH------GAKALLVEAK-KLGGTCVNVGCVPKKVMWYASDLAERMHD-------AADY 67 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHC------CCcEEEeccc-ccccceeccCcCccHHHHHHHHHHHHHhH-------Hhhc
Confidence 59999999999999999999999 9999999986 58999999999999876433221111000 0000
Q ss_pred EEeec-CCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccc
Q 007716 187 WFLTK-DRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKEN 265 (592)
Q Consensus 187 ~~~~~-~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~ 265 (592)
.+... ...++++........+ ...+.+.+...+++.||+++.|+.+. . +++. |.+.
T Consensus 68 g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~gv~~~~g~~~~---~-~~~~---v~v~------------- 124 (450)
T TIGR01421 68 GFYQNLENTFNWPELKEKRDAY---VDRLNGIYQKNLEKNKVDVIFGHARF---T-KDGT---VEVN------------- 124 (450)
T ss_pred CcccCCcCccCHHHHHHHHHHH---HHHHHHHHHHHHHhCCCEEEEEEEEE---c-cCCE---EEEC-------------
Confidence 00000 0001111000000000 12344456666777899999997652 2 2232 3332
Q ss_pred cccceEEEcCEEEEecCCCCc
Q 007716 266 FQRGVELRGRITLLAEGCRGS 286 (592)
Q Consensus 266 f~~g~~i~a~~vI~A~G~~s~ 286 (592)
|.++.+|.||+|+|+++.
T Consensus 125 ---~~~~~~d~vIiAtGs~p~ 142 (450)
T TIGR01421 125 ---GRDYTAPHILIATGGKPS 142 (450)
T ss_pred ---CEEEEeCEEEEecCCCCC
Confidence 367999999999998764
No 110
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.23 E-value=1.8e-10 Score=128.53 Aligned_cols=94 Identities=20% Similarity=0.252 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcC-EEEEecCCCCcchHHH
Q 007716 213 QLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGR-ITLLAEGCRGSLSEKL 291 (592)
Q Consensus 213 ~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~-~vI~A~G~~s~vr~~l 291 (592)
.+...|.+.+++.|++|++++.+++++.+++|+|+||.... +|+. ..++|+ -||+|+|+.+. .++|
T Consensus 214 ~~~~~l~~~~~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~-----~~~~-------~~i~a~~aVilAtGGf~~-N~em 280 (584)
T PRK12835 214 SLVARLRLALKDAGVPLWLDSPMTELITDPDGAVVGAVVER-----EGRT-------LRIGARRGVILATGGFDH-DMDW 280 (584)
T ss_pred HHHHHHHHHHHhCCceEEeCCEEEEEEECCCCcEEEEEEEe-----CCcE-------EEEEeceeEEEecCcccC-CHHH
Confidence 35566778888899999999999999998778999998743 3332 578997 59999999998 4455
Q ss_pred HHHcCCCc----ccccCcccceeeEEEEEeec
Q 007716 292 IKNFKLRE----KSHAQHQTYALGIKEVWEID 319 (592)
Q Consensus 292 ~~~~~l~~----~~~~~~~~~~~g~~~~~~i~ 319 (592)
++++.... .....+...|.|+++...+.
T Consensus 281 ~~~y~p~~~~~~~~~g~~~~tGDGi~ma~~~G 312 (584)
T PRK12835 281 RKEYLPELERKDWSFGNPANTGDGIRAGEKVG 312 (584)
T ss_pred HHHhCCCCCcCcccCCCCCCCcHHHHHHHHcC
Confidence 55554321 01112344566665544433
No 111
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.22 E-value=1.9e-10 Score=125.20 Aligned_cols=72 Identities=15% Similarity=0.152 Sum_probs=58.1
Q ss_pred EEEcHHHHHHHHHHHHHH----cC--CEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEe
Q 007716 207 YVISLSQLVRWLGGKAEE----LG--VEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLA 280 (592)
Q Consensus 207 ~~v~~~~l~~~L~~~a~~----~G--v~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A 280 (592)
..++...+.+.|.+.+++ .| ++|+++++|++|..++ +.++.|++.+ .+++||.||+|
T Consensus 206 ~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~-~~~~~V~T~~----------------G~i~A~~VVva 268 (497)
T PTZ00383 206 TTVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSN-DSLYKIHTNR----------------GEIRARFVVVS 268 (497)
T ss_pred EEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecC-CCeEEEEECC----------------CEEEeCEEEEC
Confidence 468899999999999998 77 8899999999998875 3455787765 37999999999
Q ss_pred cCCCCcchHHHHHHcCCC
Q 007716 281 EGCRGSLSEKLIKNFKLR 298 (592)
Q Consensus 281 ~G~~s~vr~~l~~~~~l~ 298 (592)
+|+++. .+.+.+|+.
T Consensus 269 AG~~S~---~La~~~Gi~ 283 (497)
T PTZ00383 269 ACGYSL---LFAQKMGYG 283 (497)
T ss_pred cChhHH---HHHHHhCCC
Confidence 999974 455555653
No 112
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=99.21 E-value=9.7e-11 Score=121.85 Aligned_cols=144 Identities=19% Similarity=0.288 Sum_probs=89.7
Q ss_pred cEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEE-cCCCCCCCccccc--CccChHHHHHhhHhhhhcCCCeeeeccCCc
Q 007716 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVV-EKGAEVGAHIISG--NVFEPRALNELLPQWKQEEAPIRVPVSSDK 185 (592)
Q Consensus 109 DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vl-Ek~~~~g~~~~~g--~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~ 185 (592)
||+|||||.||+.||+.+++. |++|+|+ ++.+.++....+. +.+....|.+ +....+..+....+...
T Consensus 1 DViVVGgG~AG~eAA~aaAr~------G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~---Eidalgg~m~~~aD~~~ 71 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARM------GAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVR---EIDALGGLMGRAADETG 71 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHT------T--EEEEES-GGGTT--SSSSEEESTTHHHHHH---HHHHTT-SHHHHHHHHE
T ss_pred CEEEECCCHHHHHHHHHHHHC------CCCEEEEeecccccccccchhhhccccccchhH---HHhhhhhHHHHHHhHhh
Confidence 899999999999999999999 9999999 5555555422211 1122222222 22222211111111122
Q ss_pred --EEEeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHH-cCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCc
Q 007716 186 --FWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEE-LGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSK 262 (592)
Q Consensus 186 --~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~-~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~ 262 (592)
+..+...++... ....+.++|..+.+++.+.+++ .+++|+. ..|+++..++ ++|++|.+.+
T Consensus 72 i~~~~lN~skGpav-----~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~-~~V~~l~~e~-~~v~GV~~~~--------- 135 (392)
T PF01134_consen 72 IHFRMLNRSKGPAV-----HALRAQVDRDKYSRAMREKLESHPNLTIIQ-GEVTDLIVEN-GKVKGVVTKD--------- 135 (392)
T ss_dssp EEEEEESTTS-GGC-----TEEEEEE-HHHHHHHHHHHHHTSTTEEEEE-S-EEEEEECT-TEEEEEEETT---------
T ss_pred hhhhcccccCCCCc-----cchHhhccHHHHHHHHHHHHhcCCCeEEEE-cccceEEecC-CeEEEEEeCC---------
Confidence 223322222111 1124689999999999999998 4689874 6899998877 8899999986
Q ss_pred ccccccceEEEcCEEEEecCC
Q 007716 263 KENFQRGVELRGRITLLAEGC 283 (592)
Q Consensus 263 ~~~f~~g~~i~a~~vI~A~G~ 283 (592)
|.++.||.||+|||.
T Consensus 136 ------g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 136 ------GEEIEADAVVLATGT 150 (392)
T ss_dssp ------SEEEEECEEEE-TTT
T ss_pred ------CCEEecCEEEEeccc
Confidence 789999999999999
No 113
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.21 E-value=3.8e-11 Score=131.28 Aligned_cols=53 Identities=42% Similarity=0.692 Sum_probs=48.8
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHH
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNE 165 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ 165 (592)
..|||+||||||||+++|+.|+++ |++|+|+|+. .+|+.|++-+|++.+.+.+
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~------G~~v~lie~~-~~GG~c~~~gciPsk~l~~ 55 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQL------GLKTALVEKG-KLGGTCLHKGCIPSKALLH 55 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhC------CCeEEEEEcc-CCCcceEcCCcCchHHHHH
Confidence 369999999999999999999999 9999999986 6899999999999988754
No 114
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.21 E-value=3e-10 Score=126.98 Aligned_cols=67 Identities=16% Similarity=0.265 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHcCCEEecCceEEEEEEcCC---CcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCCCcc
Q 007716 211 LSQLVRWLGGKAEELGVEIYPGFAASEILYDAD---NKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (592)
Q Consensus 211 ~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~---g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~v 287 (592)
...+...|.+.+++.||+|+.++.|++++.+++ |+|.||...+ .++|+. ..+.|+.||+|||+.+.+
T Consensus 139 G~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~---~~~g~~-------~~i~AkaVVLATGG~~~~ 208 (583)
T PRK08205 139 GHMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYE---LATGEI-------HVFHAKAVVFATGGSGRV 208 (583)
T ss_pred HHHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEE---cCCCeE-------EEEEeCeEEECCCCCccc
Confidence 357888999999999999999999999987653 7888887643 122321 478999999999999854
No 115
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.20 E-value=6.4e-11 Score=127.70 Aligned_cols=162 Identities=20% Similarity=0.290 Sum_probs=89.8
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcc-cccCccC----hHHHHHhhHhhhhcCCC----
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI-ISGNVFE----PRALNELLPQWKQEEAP---- 176 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~-~~g~~i~----~~~l~~ll~~~~~~~~~---- 176 (592)
+++||||||+|.|||+||+.++ . |++|+||||.+..++.. .+++.+. ......++.++...+..
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~-~------G~~V~lleK~~~~gg~s~~a~ggi~~~~~~d~~~~~~~d~~~~g~~~~d~ 75 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLR-K------DLKILMVSKGKLNECNTYLAQGGISVARNKDDITSFVEDTLKAGQYENNL 75 (433)
T ss_pred ccccEEEECchHHHHHHHHHhc-c------CCCEEEEecCCCCCCchHHHhHhheeCCCCCCHHHHHHHHHHHhCCCCCH
Confidence 4799999999999999999974 5 99999999998766643 2332221 01111111111100000
Q ss_pred --eee----------eccCCcEEEeecCCcccCCCCCCCCCcEE-----EcHHHHHHHHHHHHHH-cCCEEecCceEEEE
Q 007716 177 --IRV----------PVSSDKFWFLTKDRAFSLPSPFSNRGNYV-----ISLSQLVRWLGGKAEE-LGVEIYPGFAASEI 238 (592)
Q Consensus 177 --~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----v~~~~l~~~L~~~a~~-~Gv~i~~g~~v~~i 238 (592)
+.. ......+.|........+..........+ .....+.+.|.+.+++ .||+|++++.++++
T Consensus 76 ~lv~~~~~~s~e~i~wL~~~Gv~f~~~~~~~~~~~~g~~~~~r~~~~~~~~g~~l~~~L~~~~~~~~gV~i~~~t~v~~L 155 (433)
T PRK06175 76 EAVKILANESIENINKLIDMGLNFDKDEKELSYTKEGAHSVNRIVHFKDNTGKKVEKILLKKVKKRKNITIIENCYLVDI 155 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccccCCCceeeeccCccccCeEEecCCCChHHHHHHHHHHHHhcCCCEEEECcEeeee
Confidence 000 00000000000000000000000000001 1234678888888875 58999999999999
Q ss_pred EEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCCCcc
Q 007716 239 LYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (592)
Q Consensus 239 ~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~v 287 (592)
+.++ +.|++|...+ +|. ...+.||.||+|+|+.+.+
T Consensus 156 i~~~-~~v~Gv~~~~-----~g~-------~~~i~Ak~VILAtGG~~~l 191 (433)
T PRK06175 156 IEND-NTCIGAICLK-----DNK-------QINIYSKVTILATGGIGGL 191 (433)
T ss_pred EecC-CEEEEEEEEE-----CCc-------EEEEEcCeEEEccCccccc
Confidence 8765 6787876432 121 1478999999999997753
No 116
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.20 E-value=2.6e-10 Score=126.69 Aligned_cols=159 Identities=21% Similarity=0.222 Sum_probs=93.3
Q ss_pred ccccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCC-CCCcc-cccCccC-----hHHHHHhhHhhhh----
Q 007716 104 ESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAE-VGAHI-ISGNVFE-----PRALNELLPQWKQ---- 172 (592)
Q Consensus 104 ~~~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~-~g~~~-~~g~~i~-----~~~l~~ll~~~~~---- 172 (592)
+..++||||||+|.|||+||+.+ +. |++|+||||... .|+.. .+++.+. ....++.+.++..
T Consensus 4 ~~~~~DVlVVG~G~AGl~AAi~A-~~------G~~VilleK~~~~~gG~s~~a~gg~~~~~~~~d~~~~~~~d~~~~~~~ 76 (543)
T PRK06263 4 EIMITDVLIIGSGGAGARAAIEA-ER------GKNVVIVSKGLFGKSGCTVMAEGGYNAVLNPEDSFEKHFEDTMKGGAY 76 (543)
T ss_pred ceeccCEEEECccHHHHHHHHHH-hc------CCCEEEEEccCCCCCccccccCceEEEeCCCCCCHHHHHHHHHHHhcC
Confidence 44679999999999999999999 77 999999999864 33322 2332221 1111111111110
Q ss_pred -----------------------cCCCeeeeccCCcEEEeecCCcccCCCCCCCCCcEE--EcHHHHHHHHHHHHHHcCC
Q 007716 173 -----------------------EEAPIRVPVSSDKFWFLTKDRAFSLPSPFSNRGNYV--ISLSQLVRWLGGKAEELGV 227 (592)
Q Consensus 173 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~l~~~L~~~a~~~Gv 227 (592)
.+.++... .+............++.. .+. .....+...|.+.+++.||
T Consensus 77 ~~d~~lv~~~~~~s~~~i~~L~~~Gv~f~~~--~~g~~~~~~~~g~~~~r~-----~~~~~~~G~~i~~~L~~~~~~~gv 149 (543)
T PRK06263 77 LNDPKLVEILVKEAPKRLKDLEKFGALFDRT--EDGEIAQRPFGGQSFNRT-----CYAGDRTGHEMMMGLMEYLIKERI 149 (543)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCcceeC--CCCceeecccCCeEcCeE-----EECCCCCHHHHHHHHHHHHhcCCC
Confidence 01111100 000000000000000000 000 1235788889998988999
Q ss_pred EEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCCCc
Q 007716 228 EIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 286 (592)
Q Consensus 228 ~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~ 286 (592)
+|++++.++++..+++++|+||...+ .++|+. ..++||.||+|||+.+.
T Consensus 150 ~i~~~t~v~~Li~~~~~~v~Gv~~~~---~~~g~~-------~~i~AkaVIlATGG~~~ 198 (543)
T PRK06263 150 KILEEVMAIKLIVDENREVIGAIFLD---LRNGEI-------FPIYAKATILATGGAGQ 198 (543)
T ss_pred EEEeCeEeeeeEEeCCcEEEEEEEEE---CCCCcE-------EEEEcCcEEECCCCCCC
Confidence 99999999999987655588887543 123332 57999999999999875
No 117
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.19 E-value=4.1e-10 Score=125.94 Aligned_cols=167 Identities=22% Similarity=0.242 Sum_probs=93.5
Q ss_pred ccccccEEEECCCHHHHHHHHHHHHhhhhcCCC---CcEEEEcCCCCCCCcc-cccCcc----Ch---HHHHHhhHhhhh
Q 007716 104 ESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVD---LSVCVVEKGAEVGAHI-ISGNVF----EP---RALNELLPQWKQ 172 (592)
Q Consensus 104 ~~~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g---~~V~vlEk~~~~g~~~-~~g~~i----~~---~~l~~ll~~~~~ 172 (592)
+..++||||||||.|||+||+.+++. | ++|+||||....++++ .+++.+ .+ ...+..+.+...
T Consensus 2 ~~~~~DVlVVG~G~AGl~AA~~Aa~~------G~~~~~V~lleK~~~~~~~s~~a~Gg~~a~~~~~~~ds~e~~~~d~~~ 75 (577)
T PRK06069 2 EVLKYDVVIVGSGLAGLRAAVAAAER------SGGKLSVAVVSKTQPMRSHSVSAEGGTAAVLYPEKGDSFDLHAYDTVK 75 (577)
T ss_pred CceecCEEEECccHHHHHHHHHHHHh------CCCCCcEEEEEcccCCCCCceecccccceeeccccCCCHHHHHHHHHH
Confidence 34579999999999999999999998 8 8999999998766543 232222 11 111111111000
Q ss_pred cCCCe------e----------eeccCCcEEEee-cCCccc-CCCCC--CCCCcEEE--cHHHHHHHHHHHHHH-cCCEE
Q 007716 173 EEAPI------R----------VPVSSDKFWFLT-KDRAFS-LPSPF--SNRGNYVI--SLSQLVRWLGGKAEE-LGVEI 229 (592)
Q Consensus 173 ~~~~~------~----------~~~~~~~~~~~~-~~~~~~-~~~~~--~~~~~~~v--~~~~l~~~L~~~a~~-~Gv~i 229 (592)
....+ . .......+.|.. .+..+. ..... .....+.. ....+...|.+++.+ .||++
T Consensus 76 ~g~~~~d~~lv~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~d~tG~~i~~~L~~~~~~~~gv~i 155 (577)
T PRK06069 76 GSDFLADQDAVEVFVREAPEEIRFLDHWGVPWSRRPDGRISQRPFGGMSFPRTTFAADKTGFYIMHTLYSRALRFDNIHF 155 (577)
T ss_pred hhcccCCHHHHHHHHHHHHHHHHHHHHcCCeeEecCCCcEeeeecCCcccceeeEcCCCchHHHHHHHHHHHHhcCCCEE
Confidence 00000 0 000000111100 000000 00000 00000111 134678888888876 58999
Q ss_pred ecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCCCcc
Q 007716 230 YPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (592)
Q Consensus 230 ~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~v 287 (592)
++++.++++..++ +.+.||...+. .+|+. ..+.|+.||+|||+.+.+
T Consensus 156 ~~~~~v~~Li~~~-g~v~Gv~~~~~---~~g~~-------~~i~Ak~VIlATGG~~~~ 202 (577)
T PRK06069 156 YDEHFVTSLIVEN-GVFKGVTAIDL---KRGEF-------KVFQAKAGIIATGGAGRL 202 (577)
T ss_pred EECCEEEEEEEEC-CEEEEEEEEEc---CCCeE-------EEEECCcEEEcCchhccc
Confidence 9999999998765 77888875331 22321 468999999999998764
No 118
>PRK12839 hypothetical protein; Provisional
Probab=99.19 E-value=4.8e-10 Score=124.73 Aligned_cols=69 Identities=23% Similarity=0.278 Sum_probs=54.0
Q ss_pred EcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCCCcch
Q 007716 209 ISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLS 288 (592)
Q Consensus 209 v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~vr 288 (592)
+....|...|.+.+++.|++|+.++.+++++.+++|+|+||...+ ++|.. ..+.++.||+|+|+.+.-.
T Consensus 211 ~~g~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~----~~g~~-------~i~aak~VVLAtGGf~~n~ 279 (572)
T PRK12839 211 VNGTALTGRLLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQG----PDGAV-------TVEATRGVVLATGGFPNDV 279 (572)
T ss_pred ccHHHHHHHHHHHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEEe----CCCcE-------EEEeCCEEEEcCCCcccCH
Confidence 355678888999999999999999999999887668899998754 23321 2334589999999999733
No 119
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.19 E-value=4.3e-10 Score=125.63 Aligned_cols=65 Identities=20% Similarity=0.348 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCCCcc
Q 007716 212 SQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (592)
Q Consensus 212 ~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~v 287 (592)
..+...|.+.+++.||+|++++.|+++..++ |.|.||...+ .++|+ ...+.|+.||+|||+.+.+
T Consensus 135 ~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~~-g~v~Gv~~~~---~~~g~-------~~~i~AkaVVlATGG~~~~ 199 (575)
T PRK05945 135 HAILHELVNNLRRYGVTIYDEWYVMRLILED-NQAKGVVMYH---IADGR-------LEVVRAKAVMFATGGYGRV 199 (575)
T ss_pred HHHHHHHHHHHhhCCCEEEeCcEEEEEEEEC-CEEEEEEEEE---cCCCe-------EEEEECCEEEECCCCCcCC
Confidence 5788889999998999999999999998764 7888886532 12232 1478999999999999864
No 120
>PRK06116 glutathione reductase; Validated
Probab=99.18 E-value=3e-11 Score=131.31 Aligned_cols=52 Identities=19% Similarity=0.431 Sum_probs=48.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHH
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNE 165 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ 165 (592)
+|||+||||||||++||+.|+++ |++|+|+|+. .+||.|++-+|++.+.|..
T Consensus 4 ~~DvvVIG~GpaG~~aA~~~a~~------G~~V~liE~~-~~GG~c~n~gciP~k~l~~ 55 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAAMY------GAKVALIEAK-RLGGTCVNVGCVPKKLMWY 55 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHHC------CCeEEEEecc-chhhhhhccCcchHHHHHH
Confidence 69999999999999999999999 9999999986 6899999999999987643
No 121
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.18 E-value=3.9e-10 Score=125.12 Aligned_cols=94 Identities=17% Similarity=0.170 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEc-CEEEEecCCCCcchHH
Q 007716 212 SQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRG-RITLLAEGCRGSLSEK 290 (592)
Q Consensus 212 ~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a-~~vI~A~G~~s~vr~~ 290 (592)
..|...|.+.+++.||+|++++++++++.+ +|+|+||...+ +|.. ..+.| +.||+|+|+.+... +
T Consensus 217 ~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~~-~g~V~GV~~~~-----~g~~-------~~i~a~kaVILAtGGf~~n~-e 282 (564)
T PRK12845 217 QALAAGLFAGVLRAGIPIWTETSLVRLTDD-GGRVTGAVVDH-----RGRE-------VTVTARRGVVLAAGGFDHDM-E 282 (564)
T ss_pred HHHHHHHHHHHHHCCCEEEecCEeeEEEec-CCEEEEEEEEE-----CCcE-------EEEEcCCEEEEecCCccccH-H
Confidence 456778888899999999999999999875 48899987643 2221 45667 68999999999854 4
Q ss_pred HHHHcCCCc----ccccCcccceeeEEEEEeec
Q 007716 291 LIKNFKLRE----KSHAQHQTYALGIKEVWEID 319 (592)
Q Consensus 291 l~~~~~l~~----~~~~~~~~~~~g~~~~~~i~ 319 (592)
+++++.... .....+...|.|++...++.
T Consensus 283 m~~~y~p~~~~~~~~~~~~~~tGDGi~ma~~aG 315 (564)
T PRK12845 283 MRWKFQSESLGEHASLGAEGNTGDAIRIAQDLG 315 (564)
T ss_pred HHHHhCCCccccccccCCCCCCCHHHHHHHHcC
Confidence 555554320 01223445566665544443
No 122
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.18 E-value=5.1e-10 Score=120.71 Aligned_cols=162 Identities=25% Similarity=0.391 Sum_probs=101.7
Q ss_pred cccccEEEECCCHHHHHHHHHHHHhhhhcCCCCc-EEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccC
Q 007716 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLS-VCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSS 183 (592)
Q Consensus 105 ~~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~-V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~ 183 (592)
...+||+|||||++||++|++|.++ |.. ++|+||+..+|+. |.....+...
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~------g~~~~~i~Ek~~~~Gg~------------------W~~~ry~~l~---- 57 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQA------GVPDFVIFEKRDDVGGT------------------WRYNRYPGLR---- 57 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHc------CCCcEEEEEccCCcCCc------------------chhccCCceE----
Confidence 3579999999999999999999999 998 9999999998874 2221111110
Q ss_pred CcEEEeecCCcccCCCC-CCCCCcEEEcHHHHHHHHHHHHHHcCC--EEecCceEEEEEEcCCCcEEEEEeccCcccCCC
Q 007716 184 DKFWFLTKDRAFSLPSP-FSNRGNYVISLSQLVRWLGGKAEELGV--EIYPGFAASEILYDADNKVIGIGTNDMGIAKDG 260 (592)
Q Consensus 184 ~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~l~~~L~~~a~~~Gv--~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G 260 (592)
.........++.. +.....+ -....+...+.+.+++.++ +|.+++.|..+..++++..+.|++.+ |
T Consensus 58 ----~~~p~~~~~~~~~p~~~~~~~-~~~~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~------~ 126 (443)
T COG2072 58 ----LDSPKWLLGFPFLPFRWDEAF-APFAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSD------G 126 (443)
T ss_pred ----ECCchheeccCCCccCCcccC-CCcccHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcC------C
Confidence 0000000111110 0000011 1112366667777777764 57788888888888877788898876 2
Q ss_pred CcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeeEEEEEeecCCCCCCCcEEEEeccCCCC
Q 007716 261 SKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQ 338 (592)
Q Consensus 261 ~~~~~f~~g~~i~a~~vI~A~G~~s~vr~~l~~~~~l~~~~~~~~~~~~~g~~~~~~i~~~~~~~g~~~~~~~~~~~~ 338 (592)
.. .++.||.||+|+|..+. . . +..++....+.|.++|+..|+-..
T Consensus 127 ~~-------~~~~a~~vV~ATG~~~~-----------P----~-----------iP~~~G~~~f~g~~~HS~~~~~~~ 171 (443)
T COG2072 127 GT-------GELTADFVVVATGHLSE-----------P----Y-----------IPDFAGLDEFKGRILHSADWPNPE 171 (443)
T ss_pred Ce-------eeEecCEEEEeecCCCC-----------C----C-----------CCCCCCccCCCceEEchhcCCCcc
Confidence 11 12779999999997542 1 0 113344445678888988887543
No 123
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.18 E-value=4.1e-10 Score=122.75 Aligned_cols=80 Identities=15% Similarity=0.216 Sum_probs=59.4
Q ss_pred CcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCC
Q 007716 205 GNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCR 284 (592)
Q Consensus 205 ~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~ 284 (592)
....++...+++.|.+.+++.|++|+++++|+++..++++.+ .|.+.+. .+|+ +.+++||+||+|+|.+
T Consensus 171 ~~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v-~v~~~~~---~~g~-------~~~i~A~~VV~AAG~~ 239 (483)
T TIGR01320 171 EGTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSW-TVTVKNT---RTGG-------KRTLNTRFVFVGAGGG 239 (483)
T ss_pred CCEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeE-EEEEeec---cCCc-------eEEEECCEEEECCCcc
Confidence 355789999999999999999999999999999988654433 3443220 1121 2479999999999999
Q ss_pred CcchHHHHHHcCCC
Q 007716 285 GSLSEKLIKNFKLR 298 (592)
Q Consensus 285 s~vr~~l~~~~~l~ 298 (592)
+. .+.+.+|+.
T Consensus 240 s~---~La~~~Gi~ 250 (483)
T TIGR01320 240 AL---PLLQKSGIP 250 (483)
T ss_pred hH---HHHHHcCCC
Confidence 74 555566765
No 124
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.18 E-value=3.1e-10 Score=122.87 Aligned_cols=153 Identities=19% Similarity=0.219 Sum_probs=90.7
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHh---hhh-cCCCeeeec
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQ---WKQ-EEAPIRVPV 181 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~---~~~-~~~~~~~~~ 181 (592)
...+|+|||||+|||+||+.|++. |++|+|+||++.+||.+..........+ .+.+. +.. .-..+....
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~------G~~v~vfE~~~~vGG~W~~~~~~~~d~~-~~~~~~~~~~s~~Y~~L~tn~ 81 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRRE------GHTVVVFEREKQVGGLWVYTPKSESDPL-SLDPTRSIVHSSVYESLRTNL 81 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhc------CCeEEEEecCCCCcceeecCCCcCCCcc-ccCCCCcccchhhhhhhhccC
Confidence 357899999999999999999998 9999999999999886532111110000 00000 000 000000000
Q ss_pred cCCcEEEeecCCcccCCCCCC------CCCcEEEcHHHHHHHHHHHHHHcCCE--EecCceEEEEEEcCCCcEEEEEecc
Q 007716 182 SSDKFWFLTKDRAFSLPSPFS------NRGNYVISLSQLVRWLGGKAEELGVE--IYPGFAASEILYDADNKVIGIGTND 253 (592)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~v~~~~l~~~L~~~a~~~Gv~--i~~g~~v~~i~~~~~g~v~~V~~~d 253 (592)
..+.+.+. ++|.... ....| .+..++.++|.+.++..|++ |+++++|++|..++ + .+.|++.+
T Consensus 82 p~~~m~f~------dfp~~~~~~~~~~~~~~f-p~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~-~-~w~V~~~~ 152 (461)
T PLN02172 82 PRECMGYR------DFPFVPRFDDESRDSRRY-PSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVD-G-KWRVQSKN 152 (461)
T ss_pred CHhhccCC------CCCCCcccccccCcCCCC-CCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecC-C-eEEEEEEc
Confidence 00001000 1111100 01122 35678999999999999988 99999999998765 3 34566643
Q ss_pred CcccCCCCcccccccceEEEcCEEEEecCCCC
Q 007716 254 MGIAKDGSKKENFQRGVELRGRITLLAEGCRG 285 (592)
Q Consensus 254 ~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s 285 (592)
.++. ..+..+|.||+|+|..+
T Consensus 153 ----~~~~-------~~~~~~d~VIvAtG~~~ 173 (461)
T PLN02172 153 ----SGGF-------SKDEIFDAVVVCNGHYT 173 (461)
T ss_pred ----CCCc-------eEEEEcCEEEEeccCCC
Confidence 1111 13568999999999754
No 125
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=99.18 E-value=5.2e-10 Score=125.11 Aligned_cols=66 Identities=27% Similarity=0.416 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCCCcch
Q 007716 212 SQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLS 288 (592)
Q Consensus 212 ~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~vr 288 (592)
..+...|.+.+++.||+|++++.+++++.++ |+|.||...+ ..+|+. ..+.||.||+|||+.+.+.
T Consensus 129 ~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~~-g~v~Gv~~~~---~~~g~~-------~~i~Ak~VVlAtGG~~~~~ 194 (566)
T TIGR01812 129 HALLHTLYEQCLKLGVSFFNEYFALDLIHDD-GRVRGVVAYD---LKTGEI-------VFFRAKAVVLATGGYGRIY 194 (566)
T ss_pred HHHHHHHHHHHHHcCCEEEeccEEEEEEEeC-CEEEEEEEEE---CCCCcE-------EEEECCeEEECCCcccCCC
Confidence 4678889998988999999999999998875 7888887643 122322 5789999999999998643
No 126
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=99.17 E-value=7.1e-11 Score=128.88 Aligned_cols=146 Identities=24% Similarity=0.351 Sum_probs=87.8
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhc-CCCeeeeccCC
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQE-EAPIRVPVSSD 184 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~-~~~~~~~~~~~ 184 (592)
..|||+||||||+|+++|+.|++. |++|+|+||...+|+.|.+.+|++.+.|.......... ..+.....
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~~------G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~--- 74 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAKL------GKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSY--- 74 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHhC------CCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhccc---
Confidence 369999999999999999999999 99999999988899999899999988765432221110 00000000
Q ss_pred cEEEeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCccc
Q 007716 185 KFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKE 264 (592)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~ 264 (592)
.....++++..+... ..+ ...+...+.+.+++.||+++.+... .+ +. +.+ .|...+ |+
T Consensus 75 -----~~~~~~~~~~l~~~~-~~~--~~~~~~~~~~~~~~~~v~~~~g~~~-~~--~~-~~~-~v~~~~------g~--- 132 (461)
T PRK05249 75 -----RVKLRITFADLLARA-DHV--INKQVEVRRGQYERNRVDLIQGRAR-FV--DP-HTV-EVECPD------GE--- 132 (461)
T ss_pred -----CCcCccCHHHHHHHH-HHH--HHHHHHHHHHHHHHCCCEEEEEEEE-Ee--cC-CEE-EEEeCC------Cc---
Confidence 000000000000000 000 0123345666677789999988532 22 22 323 354433 21
Q ss_pred ccccceEEEcCEEEEecCCCCc
Q 007716 265 NFQRGVELRGRITLLAEGCRGS 286 (592)
Q Consensus 265 ~f~~g~~i~a~~vI~A~G~~s~ 286 (592)
..++++|.||+|+|+.+.
T Consensus 133 ----~~~~~~d~lviATGs~p~ 150 (461)
T PRK05249 133 ----VETLTADKIVIATGSRPY 150 (461)
T ss_pred ----eEEEEcCEEEEcCCCCCC
Confidence 147999999999998764
No 127
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=99.17 E-value=4.8e-10 Score=125.21 Aligned_cols=168 Identities=17% Similarity=0.224 Sum_probs=93.5
Q ss_pred cccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCccc-ccCccC-----hHHHHHhhHhhhhcCCCe-
Q 007716 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII-SGNVFE-----PRALNELLPQWKQEEAPI- 177 (592)
Q Consensus 105 ~~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~-~g~~i~-----~~~l~~ll~~~~~~~~~~- 177 (592)
+.++||||||||.|||+||+.+++. ++|.+|+|+||....++++. +++.+. ....+..+.+....+.-+
T Consensus 2 t~~~DVlVVG~G~AGl~AAi~Aa~~----g~g~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~ds~e~~~~d~~~~g~~~~ 77 (582)
T PRK09231 2 TFQADLAIIGAGGAGLRAAIAAAEA----NPNLKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFDYHFHDTVAGGDWLC 77 (582)
T ss_pred ceeeeEEEECccHHHHHHHHHHHHh----CCCCcEEEEEccCCCCCChhhccchhhhhcCCCCCHHHHHHHHHHhcccCC
Confidence 3579999999999999999999986 22589999999976665442 222211 011111111111100000
Q ss_pred -----ee----------eccCCcEEEee-cCCcccCCC-C-CCCCCcE-EE--cHHHHHHHHHHHHHHc-CCEEecCceE
Q 007716 178 -----RV----------PVSSDKFWFLT-KDRAFSLPS-P-FSNRGNY-VI--SLSQLVRWLGGKAEEL-GVEIYPGFAA 235 (592)
Q Consensus 178 -----~~----------~~~~~~~~~~~-~~~~~~~~~-~-~~~~~~~-~v--~~~~l~~~L~~~a~~~-Gv~i~~g~~v 235 (592)
.. ......+.|.. .+..+.... . ......+ .. ....+...|.+.+.+. +|+++.++.+
T Consensus 78 d~~~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v 157 (582)
T PRK09231 78 EQDVVEYFVHHCPTEMTQLEQWGCPWSRKPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLKYPQIQRFDEHFV 157 (582)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCceeeeccccccCCeeEecCCCcHHHHHHHHHHHhhcCCCcEEEeCeEE
Confidence 00 00000000000 000000000 0 0000000 01 2346788888887775 7999999999
Q ss_pred EEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCCCcc
Q 007716 236 SEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (592)
Q Consensus 236 ~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~v 287 (592)
+++..++ +.|.||...+ ..+|+. ..+.|+.||+|||+.+.+
T Consensus 158 ~~Li~~~-g~v~Gv~~~~---~~~g~~-------~~i~AkaVIlATGG~~~l 198 (582)
T PRK09231 158 LDILVDD-GHVRGLVAMN---MMEGTL-------VQIRANAVVMATGGAGRV 198 (582)
T ss_pred EEEEEeC-CEEEEEEEEE---cCCCcE-------EEEECCEEEECCCCCcCC
Confidence 9999865 7888876532 123332 578999999999999875
No 128
>PLN02815 L-aspartate oxidase
Probab=99.17 E-value=3.8e-10 Score=125.61 Aligned_cols=166 Identities=17% Similarity=0.244 Sum_probs=94.7
Q ss_pred ccccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcc-cccCcc----Ch-HHHHHhhHhhhhcCCCe
Q 007716 104 ESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI-ISGNVF----EP-RALNELLPQWKQEEAPI 177 (592)
Q Consensus 104 ~~~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~-~~g~~i----~~-~~l~~ll~~~~~~~~~~ 177 (592)
+..++||||||+|.|||+||+.+++. | +|+||||....+++. .+++.+ .+ ...+..+.++...+...
T Consensus 26 ~~~~~DVlVVG~G~AGl~AAl~Aae~------G-~VvlleK~~~~gg~s~~a~Ggi~a~~~~~Ds~e~~~~d~~~~g~~~ 98 (594)
T PLN02815 26 STKYFDFLVIGSGIAGLRYALEVAEY------G-TVAIITKDEPHESNTNYAQGGVSAVLDPSDSVESHMRDTIVAGAFL 98 (594)
T ss_pred cccccCEEEECccHHHHHHHHHHhhC------C-CEEEEECCCCCCCcHHHhhcccccCCCCCCCHHHHHHHHHHhccCC
Confidence 34579999999999999999999998 8 999999998766643 233222 11 11111221111110000
Q ss_pred e----------------eeccCCcEEEee-cCCcccCC-CCCCCCCc--EE--EcHHHHHHHHHHHHHHc-CCEEecCce
Q 007716 178 R----------------VPVSSDKFWFLT-KDRAFSLP-SPFSNRGN--YV--ISLSQLVRWLGGKAEEL-GVEIYPGFA 234 (592)
Q Consensus 178 ~----------------~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~--~~--v~~~~l~~~L~~~a~~~-Gv~i~~g~~ 234 (592)
. .......+.|.. ....+... ...+.... +. .....+...|.+.+++. ||+|++++.
T Consensus 99 ~d~~lv~~~~~~s~e~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~R~~~~~d~tG~~i~~~L~~~~~~~~~i~i~~~~~ 178 (594)
T PLN02815 99 CDEETVRVVCTEGPERVKELIAMGASFDHGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVKNDPNITFFEHHF 178 (594)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhCCeeeecCCCCccccCCCCCccCceeecCCCCHHHHHHHHHHHHHhcCCCEEEeceE
Confidence 0 000000111100 00000000 00000000 00 12356888898888775 899999999
Q ss_pred EEEEEEcCCC---cEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCCCc
Q 007716 235 ASEILYDADN---KVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 286 (592)
Q Consensus 235 v~~i~~~~~g---~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~ 286 (592)
+++++.+++| +|+||...+ ..+|+. ..+.||.||+|||+.+.
T Consensus 179 ~~~Li~~~~g~~~~v~Gv~~~~---~~~g~~-------~~i~AkaVILATGG~g~ 223 (594)
T PLN02815 179 AIDLLTSQDGGSIVCHGADVLD---TRTGEV-------VRFISKVTLLASGGAGH 223 (594)
T ss_pred hheeeeecCCCccEEEEEEEEE---cCCCeE-------EEEEeceEEEcCCccee
Confidence 9999986544 278887643 123432 57899999999999875
No 129
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.17 E-value=6.5e-11 Score=129.10 Aligned_cols=54 Identities=41% Similarity=0.641 Sum_probs=49.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHh
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNEL 166 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l 166 (592)
+|||+||||||||++||+.|++. |++|+|+|+...+|+.|++-+|++.+.|...
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~------G~~V~liE~~~~~GG~c~~~gciPsK~l~~~ 56 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQL------GLKVACVEGRSTLGGTCLNVGCMPSKALLHA 56 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhC------CCeEEEEecCCceeeeeccCcccccHHHHHH
Confidence 59999999999999999999999 9999999987779999999999999987543
No 130
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=1.5e-10 Score=118.06 Aligned_cols=114 Identities=28% Similarity=0.446 Sum_probs=80.2
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCc-EEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCC
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLS-VCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSD 184 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~-V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~ 184 (592)
+.|||+|||||||||+||+.+++. +++ ++|+|+. .+|+.. . .+..
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~------~l~~~li~~~~-~~gg~~------~---------~~~~------------ 47 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARA------GLKVVLILEGG-EPGGQL------T---------KTTD------------ 47 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHc------CCCcEEEEecC-CcCCcc------c---------ccee------------
Confidence 469999999999999999999999 999 6666654 345310 0 0000
Q ss_pred cEEEeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCccc
Q 007716 185 KFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKE 264 (592)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~ 264 (592)
. -++|.. .-.+....|.+.+.++++..|+++.. ..|.++...++ ...|++.+
T Consensus 48 ----v-----enypg~-----~~~~~g~~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~~--~F~v~t~~----------- 99 (305)
T COG0492 48 ----V-----ENYPGF-----PGGILGPELMEQMKEQAEKFGVEIVE-DEVEKVELEGG--PFKVKTDK----------- 99 (305)
T ss_pred ----e-----cCCCCC-----ccCCchHHHHHHHHHHHhhcCeEEEE-EEEEEEeecCc--eEEEEECC-----------
Confidence 0 001100 00134579999999999999999887 66777766543 55688876
Q ss_pred ccccceEEEcCEEEEecCCCCc
Q 007716 265 NFQRGVELRGRITLLAEGCRGS 286 (592)
Q Consensus 265 ~f~~g~~i~a~~vI~A~G~~s~ 286 (592)
|. ++||.||+|+|....
T Consensus 100 ----~~-~~ak~vIiAtG~~~~ 116 (305)
T COG0492 100 ----GT-YEAKAVIIATGAGAR 116 (305)
T ss_pred ----Ce-EEEeEEEECcCCccc
Confidence 44 999999999998764
No 131
>PRK06370 mercuric reductase; Validated
Probab=99.16 E-value=7.4e-11 Score=128.74 Aligned_cols=54 Identities=28% Similarity=0.520 Sum_probs=48.9
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHh
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNEL 166 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l 166 (592)
.+|||+||||||||++||+.|+++ |++|+|+||. .+|+.|++.+|++++.|.+.
T Consensus 4 ~~~DvvVIG~GpaG~~aA~~aa~~------G~~v~lie~~-~~GG~c~~~gciPsk~l~~~ 57 (463)
T PRK06370 4 QRYDAIVIGAGQAGPPLAARAAGL------GMKVALIERG-LLGGTCVNTGCVPTKTLIAS 57 (463)
T ss_pred ccccEEEECCCHHHHHHHHHHHhC------CCeEEEEecC-ccCCceeccccCcHHHHHHH
Confidence 369999999999999999999999 9999999986 58999999999999887543
No 132
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.16 E-value=7.5e-10 Score=123.80 Aligned_cols=160 Identities=16% Similarity=0.122 Sum_probs=93.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcc-cccCccC--------hHHHHHhhHhhhh-----
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI-ISGNVFE--------PRALNELLPQWKQ----- 172 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~-~~g~~i~--------~~~l~~ll~~~~~----- 172 (592)
..||||||+|.|||+||+.+++. |++|+||||....++++ .+++.+. ....+..+.+...
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~------G~~V~lieK~~~~~g~s~~a~Ggi~a~~~~~~~~Ds~e~~~~d~~~~g~~~ 76 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEA------GVHVDLFSLVPVKRSHSVCAQGGINGAVNTKGEGDSPWIHFDDTVYGGDFL 76 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHc------CCcEEEEEccCCCCCcccccCCCeEEecCcCCCCCCHHHHHHHHHHhcCCc
Confidence 46999999999999999999998 99999999988655443 2222221 0111111111100
Q ss_pred ----------------------cCCCeeeeccCCcEEEeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcC----
Q 007716 173 ----------------------EEAPIRVPVSSDKFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELG---- 226 (592)
Q Consensus 173 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G---- 226 (592)
.+.++.. ..+.............+.... .+. .....+...|.+++++.+
T Consensus 77 ~d~~~v~~~~~~s~~~i~~L~~~Gv~f~~--~~~g~~~~~~~gg~~~~R~~~-~~~--~tG~~i~~~L~~~~~~~~~~~~ 151 (589)
T PRK08641 77 ANQPPVKAMCEAAPGIIHLLDRMGVMFNR--TPEGLLDFRRFGGTLHHRTAF-AGA--TTGQQLLYALDEQVRRYEVAGL 151 (589)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCccc--CCCCcEeeeccCCeecccccc-cCC--CcHHHHHHHHHHHHHhhhccCC
Confidence 1111110 000000000000000000000 000 123567888888877543
Q ss_pred CEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCCCcc
Q 007716 227 VEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (592)
Q Consensus 227 v~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~v 287 (592)
|+++.++.+++++.+++|+|+||...+. .+|+. ..+.|+.||+|||+.+.+
T Consensus 152 i~i~~~~~~~~Li~~~~g~v~Gv~~~~~---~~g~~-------~~i~AkaVILATGG~~~~ 202 (589)
T PRK08641 152 VTKYEGWEFLGAVLDDEGVCRGIVAQDL---FTMEI-------ESFPADAVIMATGGPGII 202 (589)
T ss_pred cEEEeeEEEEEEEECCCCEEEEEEEEEC---CCCcE-------EEEECCEEEECCCCCcCC
Confidence 8899999999999876688999987641 12322 468999999999999863
No 133
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.16 E-value=3.4e-10 Score=123.52 Aligned_cols=53 Identities=42% Similarity=0.710 Sum_probs=48.5
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHH
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNE 165 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ 165 (592)
.+|||+||||||||++||+.|+++ |.+|+|+||.. +||.|.+-+|++.+.+.+
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~------G~~V~liE~~~-~GG~c~~~gciP~k~l~~ 55 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQL------GLKVAIVEKEK-LGGTCLNRGCIPSKALLH 55 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHC------CCcEEEEeccc-cccceeecccCCcHHHHH
Confidence 369999999999999999999999 99999999987 899999999999887644
No 134
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=99.16 E-value=9.2e-10 Score=122.70 Aligned_cols=167 Identities=19% Similarity=0.228 Sum_probs=95.4
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcc-cccCccC-----hHHHHHhhHhhhhcCCCee-
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI-ISGNVFE-----PRALNELLPQWKQEEAPIR- 178 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~-~~g~~i~-----~~~l~~ll~~~~~~~~~~~- 178 (592)
.++||||||||+|||+||+.+++. ++|++|+|+||....++++ .+++.+. ....+..+.+....+..+.
T Consensus 2 ~~~DVlVIG~G~AGl~AAl~aa~~----g~g~~V~lveK~~~~~~~s~~a~Gg~~~~~~~~ds~e~~~~dt~~~g~~~~d 77 (580)
T TIGR01176 2 AQHDIAVIGAGGAGLRAAIAAAEA----NPHLDVALISKVYPMRSHTVAAEGGSAAVTGDDDSLDEHFHDTVSGGDWLCE 77 (580)
T ss_pred cceeEEEECccHHHHHHHHHHHHh----CCCCcEEEEEccCCCCCCchhcCCchhhhcCCCCCHHHHHHHHHHhcCCcCc
Confidence 368999999999999999999875 2358999999998766654 2322221 1111111211111100000
Q ss_pred ---------------eeccCCcEEEee-cCCcccCCC-C-CCCCCcEE---EcHHHHHHHHHHHHHHc-CCEEecCceEE
Q 007716 179 ---------------VPVSSDKFWFLT-KDRAFSLPS-P-FSNRGNYV---ISLSQLVRWLGGKAEEL-GVEIYPGFAAS 236 (592)
Q Consensus 179 ---------------~~~~~~~~~~~~-~~~~~~~~~-~-~~~~~~~~---v~~~~l~~~L~~~a~~~-Gv~i~~g~~v~ 236 (592)
.......+.|.. .+..+.... . ......+. -....|.+.|.+++.+. ||+++.++.++
T Consensus 78 ~~lv~~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~ 157 (580)
T TIGR01176 78 QDVVEYFVAEAPKEMVQLEHWGCPWSRKPDGRVNVRRFGGMKKERTWFAADKTGFHMLHTLFQTSLTYPQIMRYDEWFVT 157 (580)
T ss_pred HHHHHHHHHHhHHHHHHHHHcCCccEecCCCceeeeccCCccCCeeeecCCCCHHHHHHHHHHHHHhcCCCEEEeCeEEE
Confidence 000000111100 000000000 0 00000011 12467888999888774 79999999999
Q ss_pred EEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCCCcc
Q 007716 237 EILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (592)
Q Consensus 237 ~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~v 287 (592)
+++.++ +.|.||...+ .++|+. ..+.|+.||+|||+.+.+
T Consensus 158 ~Li~~~-g~v~Gv~~~~---~~~g~~-------~~i~AkaVILATGG~~~~ 197 (580)
T TIGR01176 158 DLLVDD-GRVCGLVAIE---MAEGRL-------VTILADAVVLATGGAGRV 197 (580)
T ss_pred EEEeeC-CEEEEEEEEE---cCCCcE-------EEEecCEEEEcCCCCccc
Confidence 999875 7888887543 123432 578999999999999864
No 135
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.15 E-value=7.9e-10 Score=124.42 Aligned_cols=166 Identities=27% Similarity=0.269 Sum_probs=92.7
Q ss_pred cccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcc-cccCcc----C----hHHHHHhhHhhhhcCC
Q 007716 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI-ISGNVF----E----PRALNELLPQWKQEEA 175 (592)
Q Consensus 105 ~~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~-~~g~~i----~----~~~l~~ll~~~~~~~~ 175 (592)
.+++||||||||.|||+||+.+++. |++|+||||....++++ .+++.+ . .......+.+....+.
T Consensus 6 ~~~~DVvVIG~G~AGl~AAl~Aae~------G~~V~lieK~~~~~g~s~~a~Ggi~a~~~~~~~~ds~~~~~~D~~~~g~ 79 (626)
T PRK07803 6 RHSYDVVVIGAGGAGLRAAIEARER------GLRVAVVCKSLFGKAHTVMAEGGCAAAMGNVNPKDNWQVHFRDTMRGGK 79 (626)
T ss_pred ceeecEEEECcCHHHHHHHHHHHHC------CCCEEEEeccCCCCCcceecCccceeeccCCCCCCCHHHHHHHHHHHhc
Confidence 4579999999999999999999998 99999999987554432 221111 0 1111111111100000
Q ss_pred ---------------Ceee-eccCCcEEEee-cCCcccC-CCCCCCCCc--EE--EcHHHHHHHHHHHHHHc--------
Q 007716 176 ---------------PIRV-PVSSDKFWFLT-KDRAFSL-PSPFSNRGN--YV--ISLSQLVRWLGGKAEEL-------- 225 (592)
Q Consensus 176 ---------------~~~~-~~~~~~~~~~~-~~~~~~~-~~~~~~~~~--~~--v~~~~l~~~L~~~a~~~-------- 225 (592)
+... ......+.|.. .+..+.. ....+.... +. -....+...|.+.+++.
T Consensus 80 ~l~d~~~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~tG~~i~~~L~~~~~~~~~~~~~~~ 159 (626)
T PRK07803 80 FLNNWRMAELHAKEAPDRVWELETYGALFDRTKDGRISQRNFGGHTYPRLAHVGDRTGLELIRTLQQKIVSLQQEDHAEL 159 (626)
T ss_pred cCCcHHHHHHHHHHhHHHHHHHHHCCCceEecCCCceeeeecCCcccCeEEecCCCcHHHHHHHHHHHHHhhhccccccc
Confidence 0000 00000111100 0000000 000000000 00 12357888888888776
Q ss_pred C-----CEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCCCcc
Q 007716 226 G-----VEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (592)
Q Consensus 226 G-----v~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~v 287 (592)
| |+|++++.|+++..++ |.|.||...+ ..+|+. ..+.|+.||+|+|+.+.+
T Consensus 160 G~~~~~v~i~~~~~v~~L~~~~-g~v~Gv~~~~---~~~g~~-------~~i~Ak~VVlATGG~~~~ 215 (626)
T PRK07803 160 GDYEARIKVFAECTITELLKDG-GRIAGAFGYW---RESGRF-------VLFEAPAVVLATGGIGKS 215 (626)
T ss_pred cCCcCceEEEeCCEEEEEEEEC-CEEEEEEEEE---CCCCeE-------EEEEcCeEEECCCcccCC
Confidence 7 9999999999998764 7888886543 123332 578999999999997653
No 136
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=99.14 E-value=3.8e-10 Score=125.53 Aligned_cols=181 Identities=20% Similarity=0.239 Sum_probs=96.7
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCC--CCCCcc-cccCccC---h---------HHHHHhhHhh
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA--EVGAHI-ISGNVFE---P---------RALNELLPQW 170 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~--~~g~~~-~~g~~i~---~---------~~l~~ll~~~ 170 (592)
+++||||||+|.|||+||+.+++. |++|+||||.+ ..|+.+ .+++.+. . ...+.++.++
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~------G~~VivlEK~~~~~~GG~s~~s~Gg~~~~~~~~q~~~gi~ds~e~~~~d~ 76 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADA------GKRVLLLDQENEANLGGQAFWSLGGLFLVDSPEQRRLGIKDSLELALQDW 76 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHC------CCeEEEEeCCCCCCCCCceeccCCceeccCCHHHHhcCcccCHHHHHHHH
Confidence 579999999999999999999998 99999999998 566654 2333221 1 1111122222
Q ss_pred hhcCC---Cee--------eec---cCCcEEEeecCCcccCCC------------C--CCCCCc-EE--EcHHHHHHHHH
Q 007716 171 KQEEA---PIR--------VPV---SSDKFWFLTKDRAFSLPS------------P--FSNRGN-YV--ISLSQLVRWLG 219 (592)
Q Consensus 171 ~~~~~---~~~--------~~~---~~~~~~~~~~~~~~~~~~------------~--~~~~~~-~~--v~~~~l~~~L~ 219 (592)
..... ... ..+ ..+.+.|+.. ..+.+.. . ...... +. .....+...|.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~s~e~i~wL~~-~Gv~f~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~G~~~~~~l~ 155 (549)
T PRK12834 77 LGSAGFDRPEDHWPRQWAEAYVDFAAGEKRSWLHS-LGLRFFPVVGWAERGGGDAGGHGNSVPRFHITWGTGPGVVEPFE 155 (549)
T ss_pred HhccCCCCccccchHHHHHHHHHhCCHHHHHHHHH-cCCeeEecCCccccCCcccCCcccccCceecCCCCcHHHHHHHH
Confidence 11100 000 000 0011111110 0111100 0 000000 00 01235667777
Q ss_pred HHHH---Hc-CCEEecCceEEEEEEcCCCcEEEEEeccC--cccCCCCcc-cccccceEEEcCEEEEecCCCCcchHHHH
Q 007716 220 GKAE---EL-GVEIYPGFAASEILYDADNKVIGIGTNDM--GIAKDGSKK-ENFQRGVELRGRITLLAEGCRGSLSEKLI 292 (592)
Q Consensus 220 ~~a~---~~-Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~--g~~~~G~~~-~~f~~g~~i~a~~vI~A~G~~s~vr~~l~ 292 (592)
+.++ +. ||+|++++++++++.++ |+|+||...+. +...+|+.. .+-..-..+.||.||+|||..+...+ |.
T Consensus 156 ~~~~~~~~~~gv~i~~~t~~~~Li~~~-g~V~Gv~~~~~~~~~~~~~~~~~~~~~~~~~i~AkaVILATGGf~~n~e-m~ 233 (549)
T PRK12834 156 RRVREAAARGLVRFRFRHRVDELVVTD-GAVTGVRGTVLEPSDAERGEASSREVVGEFELRAQAVIVTSGGIGGNHE-LV 233 (549)
T ss_pred HHHHHHHHhCCceEEecCEeeEEEEeC-CEEEEEEEEecccccccccccccccccceEEEecCEEEEeCCCcccCHH-HH
Confidence 6664 23 59999999999999864 88999986321 000000000 00000157899999999999998654 44
Q ss_pred HHc
Q 007716 293 KNF 295 (592)
Q Consensus 293 ~~~ 295 (592)
+++
T Consensus 234 ~~~ 236 (549)
T PRK12834 234 RRN 236 (549)
T ss_pred HHh
Confidence 443
No 137
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.14 E-value=1.5e-08 Score=111.60 Aligned_cols=63 Identities=16% Similarity=0.227 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCCCcchH
Q 007716 211 LSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSE 289 (592)
Q Consensus 211 ~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~vr~ 289 (592)
...+.+.|.+.+++.|++|+++++|++|..++ +.+.+|++.+ |.++.||.||.|.|.+..+.+
T Consensus 228 ~~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~-~~~~gv~~~~---------------g~~~~ad~vV~a~~~~~~~~~ 290 (493)
T TIGR02730 228 VGQIAESLVKGLEKHGGQIRYRARVTKIILEN-GKAVGVKLAD---------------GEKIYAKRIVSNATRWDTFGK 290 (493)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCeeeEEEecC-CcEEEEEeCC---------------CCEEEcCEEEECCChHHHHHH
Confidence 36788999999999999999999999998876 6788898875 568999999999998766544
No 138
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=99.13 E-value=1.3e-10 Score=126.99 Aligned_cols=147 Identities=19% Similarity=0.276 Sum_probs=85.6
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcC------CCCCCCcccccCccChHHHHHh---hHhhhhcCCC
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEK------GAEVGAHIISGNVFEPRALNEL---LPQWKQEEAP 176 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk------~~~~g~~~~~g~~i~~~~l~~l---l~~~~~~~~~ 176 (592)
.+|||+||||||||++||+.|++. |.+|+|||+ ...+|+.|.+-+|++.+.+... +..+......
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~------g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~ 76 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQL------GLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFAD 76 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhC------CCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHh
Confidence 369999999999999999999999 999999998 3568898999999987765332 2222210000
Q ss_pred eeeeccCCcEEEeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcc
Q 007716 177 IRVPVSSDKFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGI 256 (592)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~ 256 (592)
. .+.. ....++++..+..... + ...+...+.+.++..||+++.+.. ..+..++++.. |.+.+
T Consensus 77 ~-------G~~~--~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~v~~~~g~~-~~~~~~~~~~~--v~v~~--- 138 (475)
T PRK06327 77 H-------GIHV--DGVKIDVAKMIARKDK-V--VKKMTGGIEGLFKKNKITVLKGRG-SFVGKTDAGYE--IKVTG--- 138 (475)
T ss_pred c-------CccC--CCCccCHHHHHHHHHH-H--HHHHHHHHHHHHHhCCCEEEEEEE-EEecCCCCCCE--EEEec---
Confidence 0 0000 0000111100000000 0 012233444555667999998763 33333332333 33321
Q ss_pred cCCCCcccccccceEEEcCEEEEecCCCCc
Q 007716 257 AKDGSKKENFQRGVELRGRITLLAEGCRGS 286 (592)
Q Consensus 257 ~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~ 286 (592)
. ++.++++|.||+|+|++..
T Consensus 139 -~---------~~~~~~~d~lViATGs~p~ 158 (475)
T PRK06327 139 -E---------DETVITAKHVIIATGSEPR 158 (475)
T ss_pred -C---------CCeEEEeCEEEEeCCCCCC
Confidence 0 1358999999999998874
No 139
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.13 E-value=2.3e-09 Score=117.12 Aligned_cols=79 Identities=19% Similarity=0.324 Sum_probs=58.4
Q ss_pred cEEEcHHHHHHHHHHHHHHcC-CEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCC
Q 007716 206 NYVISLSQLVRWLGGKAEELG-VEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCR 284 (592)
Q Consensus 206 ~~~v~~~~l~~~L~~~a~~~G-v~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~ 284 (592)
.+.++...+.+.|.+.+++.| ++|+++++|+++..++++.+ .|.+.+. .+|+ +.+++|++||+|+|++
T Consensus 177 ~g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~-~v~~~~~---~~G~-------~~~i~A~~VVvaAGg~ 245 (494)
T PRK05257 177 GTDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSW-TVTVKDL---KTGE-------KRTVRAKFVFIGAGGG 245 (494)
T ss_pred ceEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCE-EEEEEEc---CCCc-------eEEEEcCEEEECCCcc
Confidence 567899999999999999987 89999999999988665543 3443210 1121 1369999999999999
Q ss_pred CcchHHHHHHcCCC
Q 007716 285 GSLSEKLIKNFKLR 298 (592)
Q Consensus 285 s~vr~~l~~~~~l~ 298 (592)
+. .+.+..|+.
T Consensus 246 s~---~L~~~~Gi~ 256 (494)
T PRK05257 246 AL---PLLQKSGIP 256 (494)
T ss_pred hH---HHHHHcCCC
Confidence 74 455556665
No 140
>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=99.12 E-value=4.1e-09 Score=103.98 Aligned_cols=175 Identities=18% Similarity=0.279 Sum_probs=97.0
Q ss_pred cCEEEEecCCCCcchHHHHHHcCCCcccccCcccceeeEEEEEeecCCCCCCCcEEEEeccCCCCCCcceEEEEEcCCCe
Q 007716 274 GRITLLAEGCRGSLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGGSFLYHMNDRQ 353 (592)
Q Consensus 274 a~~vI~A~G~~s~vr~~l~~~~~l~~~~~~~~~~~~~g~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~ 353 (592)
|+++|+|||+.|.+|+++. + .......+-+|+... +..-.....|.++ ++ + .+...+|+.+.+.
T Consensus 2 A~LtivaDG~~S~fRk~l~-----~--~~~~v~S~fvGl~l~-~~~lp~~~~ghvi--l~----~--~~pil~YqI~~~e 65 (276)
T PF08491_consen 2 APLTIVADGCFSKFRKELS-----D--NKPQVRSYFVGLILK-DAPLPKPNHGHVI--LG----K--PGPILLYQISSNE 65 (276)
T ss_pred CCEEEEecCCchHHHHhhc-----C--CCCceeeeEEEEEEc-CCCCCCCCceEEE--Ec----C--CCcEEEEEcCCCc
Confidence 7899999999999999873 1 112233444554321 1111111223222 22 1 1347899988887
Q ss_pred EEEEEEecccCCCCCCCcHHHHHHh-hc--CccccccccCC--c-eeeecceeeecCCccccCcccCCCEEEEcCCCccc
Q 007716 354 IALGLVVALNYHNPFLNPYEEFQKF-KH--HPAIKPLLEGG--T-VVQYGARTLNEGGLQSIPYPVFPGGAIIGCAAGFL 427 (592)
Q Consensus 354 ~~vg~~~~~~~~~~~~~~~~~~~~~-~~--~p~i~~~l~~~--~-~~~~~~~~i~~gg~~~~p~~~~~~v~LiGDAA~~~ 427 (592)
+++-+-+..+ .-|..+. .++..+ ++ .|.+-+.+... + ..+...+..|..-+.+. ....+|++++|||+++.
T Consensus 66 tR~Lvdvp~~-k~P~~~~-g~l~~yl~~~v~P~LP~~lr~~f~~al~~~rirsMPn~~lp~~-~~~~~G~vllGDA~nmr 142 (276)
T PF08491_consen 66 TRVLVDVPGP-KLPSVSN-GELKEYLREVVAPQLPEELRPSFEKALEDGRIRSMPNSFLPAS-PNWKPGVVLLGDAANMR 142 (276)
T ss_pred eEEEEEeCCC-ccCCccc-hHHHHHHHHHHHhhchHHHHHHHHHHhccCCcceecccccCCC-CCCCCCEEEEehhhcCc
Confidence 7776555433 1222221 122222 11 13332222110 0 00011233444333222 23347999999999999
Q ss_pred CCCCccchHHHHHHHHHHHHHHhhh--ccCC----chHHHHHHHHH
Q 007716 428 NVPKIKGTHTAMKSGMLAAEAGFGV--LHED----SNMEIYWDTLQ 467 (592)
Q Consensus 428 ~P~~g~G~~~Am~dg~~aA~~l~~~--~~~~----~~l~~Y~~~~~ 467 (592)
+|++|+||+.|+.|+.++++.|... +.+. ++++.|...|+
T Consensus 143 HPLTGgGMTVAl~Dv~lL~~lL~~~~dl~d~~~v~~~l~~f~~~Rk 188 (276)
T PF08491_consen 143 HPLTGGGMTVALNDVVLLRDLLSPIPDLSDTKAVLEALKKFHWKRK 188 (276)
T ss_pred CCccccchhhHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999876 3221 34555555544
No 141
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=99.12 E-value=2e-10 Score=125.43 Aligned_cols=56 Identities=25% Similarity=0.412 Sum_probs=49.3
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCC--------CCCCCcccccCccChHHHHHh
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKG--------AEVGAHIISGNVFEPRALNEL 166 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~--------~~~g~~~~~g~~i~~~~l~~l 166 (592)
.+|||+||||||+|.+||+.++++. |.+|+|||+. ..+||.|++-+|++.++|.+.
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~-----g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~ 65 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLY-----KKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTG 65 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhc-----CCEEEEEecccCccccccCCccCeecCcCCccHHHHHHH
Confidence 3699999999999999999999941 7999999984 468999999999999998554
No 142
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.12 E-value=1.4e-08 Score=109.27 Aligned_cols=172 Identities=23% Similarity=0.320 Sum_probs=106.3
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcc-cccCccCh----------HHHHHhhHh---hh
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI-ISGNVFEP----------RALNELLPQ---WK 171 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~-~~g~~i~~----------~~l~~ll~~---~~ 171 (592)
+++||+|||||+.|+-.|..++.+ |++|+|+|+++.-.+++ .+...|.. +-..|.+.+ +.
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~R------Gl~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~~e~~lvrEal~Er~vL~ 84 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAGR------GLKVALVEKGDLASGTSSRSTKLIHGGLRYLEQYEFSLVREALAEREVLL 84 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHhC------CCeEEEEecCcccCcccCccccCccchhhhhhhcchHHHHHHHHHHHHHH
Confidence 689999999999999999999999 99999999998654433 22222210 101111100 11
Q ss_pred hc------CCCeeeeccC--CcEE-----------------------EeecCCcccCCCCCCC---C-----CcEEEcHH
Q 007716 172 QE------EAPIRVPVSS--DKFW-----------------------FLTKDRAFSLPSPFSN---R-----GNYVISLS 212 (592)
Q Consensus 172 ~~------~~~~~~~~~~--~~~~-----------------------~~~~~~~~~~~~~~~~---~-----~~~~v~~~ 212 (592)
.. ..++..++.. ...+ .+.............. . ..+.++-.
T Consensus 85 ~~APH~v~p~~~~lp~~~~~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~vdda 164 (532)
T COG0578 85 RIAPHLVEPLPFLLPHLPGLRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVVDDA 164 (532)
T ss_pred HhCccccccCcCeEeccCCcccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEccceechH
Confidence 11 0111111111 0000 0000001111111111 1 14457788
Q ss_pred HHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCCCcchHHHH
Q 007716 213 QLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLI 292 (592)
Q Consensus 213 ~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~vr~~l~ 292 (592)
+|.-.....|.+.|.+|+..++|+.+..++ + |++|.+.| ..+|+. .+++|+.||.|+|.|+- ++.
T Consensus 165 RLv~~~a~~A~~~Ga~il~~~~v~~~~re~-~-v~gV~~~D---~~tg~~-------~~ira~~VVNAaGpW~d---~i~ 229 (532)
T COG0578 165 RLVAANARDAAEHGAEILTYTRVESLRREG-G-VWGVEVED---RETGET-------YEIRARAVVNAAGPWVD---EIL 229 (532)
T ss_pred HHHHHHHHHHHhcccchhhcceeeeeeecC-C-EEEEEEEe---cCCCcE-------EEEEcCEEEECCCccHH---HHH
Confidence 999999999999999999999999999987 5 89999987 233443 68999999999999963 554
Q ss_pred HHcCCC
Q 007716 293 KNFKLR 298 (592)
Q Consensus 293 ~~~~l~ 298 (592)
+..+..
T Consensus 230 ~~~~~~ 235 (532)
T COG0578 230 EMAGLE 235 (532)
T ss_pred Hhhccc
Confidence 444433
No 143
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=99.12 E-value=5.7e-10 Score=125.16 Aligned_cols=163 Identities=15% Similarity=0.207 Sum_probs=92.5
Q ss_pred cccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccC--ccCh-----HHHHHhhHhhhhcCCCe
Q 007716 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGN--VFEP-----RALNELLPQWKQEEAPI 177 (592)
Q Consensus 105 ~~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~--~i~~-----~~l~~ll~~~~~~~~~~ 177 (592)
..++||||||||.|||+||+.+++. .+|++|+||||....++...+++ .++. ....+.+.+........
T Consensus 9 ~~~~DVlVIG~G~AGl~AAi~Aae~----~~G~~V~lieK~~~~~s~~~a~G~~~~~~~~~~~ds~e~~~~d~~~~~~~~ 84 (608)
T PRK06854 9 EVDTDILIIGGGMAGCGAAFEAKEW----APDLKVLIVEKANIKRSGAVAQGLSAINAYIGEGETPEDYVRYVRKDLMGI 84 (608)
T ss_pred eeEeCEEEECcCHHHHHHHHHHHHh----CCCCeEEEEECCCcCCCcccccCccccccccccCCCHHHHHHHHHHhccCC
Confidence 4579999999999999999999874 13799999999875444333222 1211 01111111111100000
Q ss_pred e----------------eeccCCcEEEee-cCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcC-CEEecCceEEEEE
Q 007716 178 R----------------VPVSSDKFWFLT-KDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELG-VEIYPGFAASEIL 239 (592)
Q Consensus 178 ~----------------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G-v~i~~g~~v~~i~ 239 (592)
. .......+.|.. ....+ .+. ......+....+.+.|.+.+++.| |+|++++.|+++.
T Consensus 85 ~d~~lv~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~-~~~---g~~~~~~~G~~~~~~L~~~a~~~ggV~i~~~~~v~~Li 160 (608)
T PRK06854 85 VREDLVYDIARHVDSVVHLFEEWGLPIWKDENGKY-VRR---GRWQIMINGESYKPIVAEAAKKALGDNVLNRVFITDLL 160 (608)
T ss_pred CCHHHHHHHHHhHHHHHHHHHHcCCeeeecCCCCc-ccc---CCccCCCChHHHHHHHHHHHHhcCCCEEEeCCEEEEEE
Confidence 0 000000111100 00000 000 000011244578888888888876 9999999999998
Q ss_pred EcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCCCc
Q 007716 240 YDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 286 (592)
Q Consensus 240 ~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~ 286 (592)
.++ +.|+||...+ ..+|+. ..+.||.||+|+|+.+.
T Consensus 161 ~~~-g~v~Gv~~~~---~~~g~~-------~~i~AkaVILATGG~~~ 196 (608)
T PRK06854 161 VDD-NRIAGAVGFS---VRENKF-------YVFKAKAVIVATGGAAG 196 (608)
T ss_pred EeC-CEEEEEEEEE---ccCCcE-------EEEECCEEEECCCchhh
Confidence 765 6788876432 012321 47899999999999874
No 144
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=99.12 E-value=1.1e-09 Score=120.26 Aligned_cols=162 Identities=20% Similarity=0.237 Sum_probs=93.3
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcc-cccCccC-----hHHHHHhhHhhhhcCCCee--
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI-ISGNVFE-----PRALNELLPQWKQEEAPIR-- 178 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~-~~g~~i~-----~~~l~~ll~~~~~~~~~~~-- 178 (592)
++||||||+|.|||+||+.+++. |. |+||||....++.+ .+++.+. ....+..+.++........
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~------G~-V~lleK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~ 74 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQ------GR-VIVLSKAPVTEGNSFYAQGGIAAVLAETDSIDSHVEDTLAAGAGICDR 74 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhC------CC-EEEEEccCCCCCcchhcCcCeeeeecCCCCHHHHHHHHHHhcCCcCCH
Confidence 57999999999999999999998 87 99999997655543 2222221 0111111111111100000
Q ss_pred --------------eeccCCcEEEee-cCCcccCCCC-CCCC-CcEEE---cHHHHHHHHHHHHHH-cCCEEecCceEEE
Q 007716 179 --------------VPVSSDKFWFLT-KDRAFSLPSP-FSNR-GNYVI---SLSQLVRWLGGKAEE-LGVEIYPGFAASE 237 (592)
Q Consensus 179 --------------~~~~~~~~~~~~-~~~~~~~~~~-~~~~-~~~~v---~~~~l~~~L~~~a~~-~Gv~i~~g~~v~~ 237 (592)
.......+.|.. ....+..... .+.. ..+.+ ....+.+.|.+.+++ .||+|++++.|++
T Consensus 75 ~~v~~~~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi~i~~~~~v~~ 154 (488)
T TIGR00551 75 EAVEFVVSDARSAVQWLVDQGVLFDRHEQGSYALTREGGHSYRRILHAADATGREVITTLVKKALNHPNIRIIEGENALD 154 (488)
T ss_pred HHHHHHHHhHHHHHHHHHHcCCcceeCCCCCccccCCCCcCCCeEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECeEeee
Confidence 000000011100 0000000000 0000 01111 246788999999987 6899999999999
Q ss_pred EEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCCCcch
Q 007716 238 ILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLS 288 (592)
Q Consensus 238 i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~vr 288 (592)
+..++ +.+.+|.+.+ . +. ...++||.||+|||+.+.+.
T Consensus 155 l~~~~-g~v~Gv~~~~----~-~~-------~~~i~A~~VVlAtGG~~~~~ 192 (488)
T TIGR00551 155 LLIET-GRVVGVWVWN----R-ET-------VETCHADAVVLATGGAGKLY 192 (488)
T ss_pred eeccC-CEEEEEEEEE----C-Cc-------EEEEEcCEEEECCCcccCCC
Confidence 98764 6788887754 1 11 15789999999999998753
No 145
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=99.11 E-value=1.1e-09 Score=123.67 Aligned_cols=65 Identities=20% Similarity=0.247 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCCCcc
Q 007716 212 SQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (592)
Q Consensus 212 ~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~v 287 (592)
..+...|.+.+++.||+|+.++.+++++.++ |+|.||...+ .++|+. ..+.|+.||+|||+.+.+
T Consensus 158 ~~l~~~L~~~~~~~gv~i~~~~~~~~Li~~~-g~v~Gv~~~~---~~~G~~-------~~i~AkaVVLATGG~g~~ 222 (657)
T PRK08626 158 HTMLYAVDNEAIKLGVPVHDRKEAIALIHDG-KRCYGAVVRC---LITGEL-------RAYVAKATLIATGGYGRI 222 (657)
T ss_pred HHHHHHHHHHHHhCCCEEEeeEEEEEEEEEC-CEEEEEEEEE---cCCCcE-------EEEEcCeEEECCCcccCC
Confidence 4677788888999999999999999999765 7888887754 123432 568899999999998864
No 146
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=99.11 E-value=5.5e-10 Score=123.14 Aligned_cols=93 Identities=13% Similarity=0.183 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHH-cCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcC-EEEEecCCCCcchHH
Q 007716 213 QLVRWLGGKAEE-LGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGR-ITLLAEGCRGSLSEK 290 (592)
Q Consensus 213 ~l~~~L~~~a~~-~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~-~vI~A~G~~s~vr~~ 290 (592)
.+...|.+.+.+ .|++|++++++++++.++ +.|++|.... +|+. .+++|+ .||+|+|+.+.. +.
T Consensus 174 ~l~~~l~~~~~~~~gv~i~~~t~~~~Li~~~-g~v~Gv~~~~-----~g~~-------~~i~A~k~VIlAtGG~~~n-~~ 239 (513)
T PRK12837 174 ALIGRFLAALARFPNARLRLNTPLVELVVED-GRVVGAVVER-----GGER-------RRVRARRGVLLAAGGFEQN-DD 239 (513)
T ss_pred HHHHHHHHHHHhCCCCEEEeCCEEEEEEecC-CEEEEEEEEE-----CCcE-------EEEEeCceEEEeCCCccCC-HH
Confidence 466666666655 489999999999998874 7898987642 3332 578996 799999999875 45
Q ss_pred HHHHcCCCc---ccccCcccceeeEEEEEeec
Q 007716 291 LIKNFKLRE---KSHAQHQTYALGIKEVWEID 319 (592)
Q Consensus 291 l~~~~~l~~---~~~~~~~~~~~g~~~~~~i~ 319 (592)
|.+.|.... .....+...|.|+++..++.
T Consensus 240 m~~~~~~~~~~~~~~~~~~~tGDGi~ma~~aG 271 (513)
T PRK12837 240 MRARYGVPGSARDTMGGPGNTGLAHQAAIAVG 271 (513)
T ss_pred HHHHhccccccCCCCCCCCCCcHHHHHHHHcC
Confidence 656664210 01223445666666544443
No 147
>PRK14727 putative mercuric reductase; Provisional
Probab=99.11 E-value=8.7e-10 Score=120.72 Aligned_cols=59 Identities=24% Similarity=0.418 Sum_probs=53.0
Q ss_pred cccccccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHH
Q 007716 101 MCRESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNE 165 (592)
Q Consensus 101 ~~~~~~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ 165 (592)
+.++.++|||+||||||+|+++|+.|++. |.+|+|+|+...+|+.|++.+|++.+.|.+
T Consensus 10 ~~~~~~~~dvvvIG~G~aG~~~a~~~~~~------g~~v~~ie~~~~~GG~c~n~GciPsk~l~~ 68 (479)
T PRK14727 10 MTRSKLQLHVAIIGSGSAAFAAAIKAAEH------GARVTIIEGADVIGGCCVNVGCVPSKILIR 68 (479)
T ss_pred cccCCCCCcEEEECCCHHHHHHHHHHHhC------CCeEEEEEccCcceeEeccccccccHHHHH
Confidence 34456789999999999999999999999 999999999878999999999999988744
No 148
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.11 E-value=7.5e-10 Score=116.99 Aligned_cols=151 Identities=21% Similarity=0.295 Sum_probs=90.0
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCC-CCcccccCccCh-----HHH-------HHhhHhhhhc-
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEV-GAHIISGNVFEP-----RAL-------NELLPQWKQE- 173 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~-g~~~~~g~~i~~-----~~l-------~~ll~~~~~~- 173 (592)
+||+|||||++|+++|+.|++. |.+|+|||+.... |+...+++.+.+ ..+ .++++++...
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~------G~~V~vle~~~~~~gaS~~~~G~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~ 74 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARR------GLSVTVIERSSRAQGASVRNFGQVWPTGQAPGPAWDRARRSREIWLELAAKA 74 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHC------CCeEEEEeCCCCCCCcccccCceEEecCCCCccHHHHHHHHHHHHHHHHHHc
Confidence 6999999999999999999998 9999999997642 333334343321 111 1122222211
Q ss_pred CCCee------eeccCC-----------------cEEEeecCCcc-cCCC--------CCCCCCcEEEcHHHHHHHHHHH
Q 007716 174 EAPIR------VPVSSD-----------------KFWFLTKDRAF-SLPS--------PFSNRGNYVISLSQLVRWLGGK 221 (592)
Q Consensus 174 ~~~~~------~~~~~~-----------------~~~~~~~~~~~-~~~~--------~~~~~~~~~v~~~~l~~~L~~~ 221 (592)
+..+. .....+ .+.+++...-. ..|. .........++...+...|.+.
T Consensus 75 ~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~l~~~~~~~~~~~~~~g~v~p~~~~~~l~~~ 154 (365)
T TIGR03364 75 GIWVRENGSLHLARTEEELAVLEEFAATREPAEYRVELLTPAEVAAKFPALRLDGLRGGLHSPDELRVEPREAIPALAAY 154 (365)
T ss_pred CCCEEeCCEEEEeCCHHHHHHHHHHHHhhhhcCCCeEEECHHHHHHhCCCCCccCceEEEEcCCCeeECHHHHHHHHHHH
Confidence 11110 000000 01122110000 0110 0112224567888999999998
Q ss_pred HHHc-CCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCCCc
Q 007716 222 AEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 286 (592)
Q Consensus 222 a~~~-Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~ 286 (592)
+.+. |++|+.+++|+++.. + .|.+.+ | +++||.||+|+|.++.
T Consensus 155 ~~~~~Gv~i~~~t~V~~i~~---~---~v~t~~---------------g-~i~a~~VV~A~G~~s~ 198 (365)
T TIGR03364 155 LAEQHGVEFHWNTAVTSVET---G---TVRTSR---------------G-DVHADQVFVCPGADFE 198 (365)
T ss_pred HHhcCCCEEEeCCeEEEEec---C---eEEeCC---------------C-cEEeCEEEECCCCChh
Confidence 8775 999999999999853 2 366654 3 5789999999999864
No 149
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=99.10 E-value=5.5e-10 Score=122.14 Aligned_cols=148 Identities=14% Similarity=0.290 Sum_probs=91.1
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCccccc---CccChHHHHHhhHhhhhcCCCeeeeccCC
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISG---NVFEPRALNELLPQWKQEEAPIRVPVSSD 184 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g---~~i~~~~l~~ll~~~~~~~~~~~~~~~~~ 184 (592)
|||+|||||+||+.+|..+++. |.+|+|+|+.....+.+.+. +.+....+.+-++.+. ..+....+..
T Consensus 1 yDViVIGaG~AGl~aA~ala~~------G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLG---G~~~~~~d~~ 71 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARM------GAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALG---GLMGKAADKA 71 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHC------CCCEEEEecccccccCCCccccccccccchhhhhhhccc---chHHHHHHhh
Confidence 6999999999999999999999 99999999875433322111 1111111111111111 0000000000
Q ss_pred --cEEEeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHc-CCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCC
Q 007716 185 --KFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGS 261 (592)
Q Consensus 185 --~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~-Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~ 261 (592)
.+..+..... | .. ......+++..+..+|.+.+++. |++++.+ .|+++..++++.+.+|.+.+
T Consensus 72 ~i~~r~ln~skg---p-AV-~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~-~Vv~li~e~~g~V~GV~t~~-------- 137 (617)
T TIGR00136 72 GLQFRVLNSSKG---P-AV-RATRAQIDKVLYRKAMRNALENQPNLSLFQG-EVEDLILEDNDEIKGVVTQD-------- 137 (617)
T ss_pred ceeheecccCCC---C-cc-cccHHhCCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEEecCCcEEEEEECC--------
Confidence 1111111100 0 00 11124678889999999999887 6888765 67787766447788999876
Q ss_pred cccccccceEEEcCEEEEecCCCC
Q 007716 262 KKENFQRGVELRGRITLLAEGCRG 285 (592)
Q Consensus 262 ~~~~f~~g~~i~a~~vI~A~G~~s 285 (592)
|..+.||.||+|+|.+.
T Consensus 138 -------G~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 138 -------GLKFRAKAVIITTGTFL 154 (617)
T ss_pred -------CCEEECCEEEEccCccc
Confidence 57899999999999995
No 150
>PRK07395 L-aspartate oxidase; Provisional
Probab=99.10 E-value=4e-10 Score=124.90 Aligned_cols=163 Identities=19% Similarity=0.179 Sum_probs=92.4
Q ss_pred cccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcc-cccCccC-----hHHHHHhhHhhhhcCCCe-
Q 007716 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI-ISGNVFE-----PRALNELLPQWKQEEAPI- 177 (592)
Q Consensus 105 ~~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~-~~g~~i~-----~~~l~~ll~~~~~~~~~~- 177 (592)
+.++||||||+|.|||+||+.++ . |.+|+||||....++.+ .+++.+. ....+..+.++.......
T Consensus 7 ~~e~DVlVVG~G~AGl~AAi~A~-~------G~~V~lieK~~~~gg~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~~~~ 79 (553)
T PRK07395 7 PSQFDVLVVGSGAAGLYAALCLP-S------HLRVGLITKDTLKTSASDWAQGGIAAAIAPDDSPKLHYEDTLKAGAGLC 79 (553)
T ss_pred cccCCEEEECccHHHHHHHHHhh-c------CCCEEEEEccCCCCCchhhhcccceecccCCCCHHHHHHHHHHhcCCCC
Confidence 35799999999999999999985 4 89999999998766644 3333221 111111111111100000
Q ss_pred ---------------eeeccCCcEEEeecCCcccC-CCCCCC-CCcEEE---cHHHHHHHHHHHHHHc-CCEEecCceEE
Q 007716 178 ---------------RVPVSSDKFWFLTKDRAFSL-PSPFSN-RGNYVI---SLSQLVRWLGGKAEEL-GVEIYPGFAAS 236 (592)
Q Consensus 178 ---------------~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~v---~~~~l~~~L~~~a~~~-Gv~i~~g~~v~ 236 (592)
........+.|......+.. +...+. ...+.. ....+...|.+.+++. ||+|++++.++
T Consensus 80 d~~lv~~~~~~s~~~i~wL~~~Gv~f~~~~~~~~~~~~~g~s~~r~~~~~d~~G~~i~~~L~~~~~~~~gi~i~~~~~v~ 159 (553)
T PRK07395 80 DPEAVRFLVEQAPEAIASLVEMGVAFDRHGQHLALTLEAAHSRPRVLHAADTTGRAIVTTLTEQVLQRPNIEIISQALAL 159 (553)
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCCeeecCCCceeeecccccccCeEEEeCCCChHHHHHHHHHHHhhcCCcEEEECcChh
Confidence 00000001111100000000 000000 001111 2356788888888764 89999999999
Q ss_pred EEEEcC-CCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCCCc
Q 007716 237 EILYDA-DNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 286 (592)
Q Consensus 237 ~i~~~~-~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~ 286 (592)
+++.++ +|+|.||.+.+ +|.. ..+.|+.||+|||+.+.
T Consensus 160 ~Li~~~~~g~v~Gv~~~~-----~g~~-------~~i~AkaVILATGG~~~ 198 (553)
T PRK07395 160 SLWLEPETGRCQGISLLY-----QGQI-------TWLRAGAVILATGGGGQ 198 (553)
T ss_pred hheecCCCCEEEEEEEEE-----CCeE-------EEEEcCEEEEcCCCCcc
Confidence 998874 47888987643 2321 46899999999999764
No 151
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.10 E-value=4.6e-10 Score=124.80 Aligned_cols=71 Identities=25% Similarity=0.435 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcC-EEEEecCCCCcchHH
Q 007716 212 SQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGR-ITLLAEGCRGSLSEK 290 (592)
Q Consensus 212 ~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~-~vI~A~G~~s~vr~~ 290 (592)
..|...|.+.+++.||+|++++.|++++.++ ++|++|.... +|+. .+++|+ .||+|+|+.+. .++
T Consensus 208 ~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~~-g~v~Gv~~~~-----~g~~-------~~i~A~~aVIlAtGG~~~-N~e 273 (557)
T PRK12844 208 AALIGRMLEAALAAGVPLWTNTPLTELIVED-GRVVGVVVVR-----DGRE-------VLIRARRGVLLASGGFGH-NAE 273 (557)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeC-CEEEEEEEEE-----CCeE-------EEEEecceEEEecCCccC-CHH
Confidence 4577788899999999999999999999875 8899988742 2322 578895 79999999998 345
Q ss_pred HHHHcC
Q 007716 291 LIKNFK 296 (592)
Q Consensus 291 l~~~~~ 296 (592)
|++.+.
T Consensus 274 m~~~~~ 279 (557)
T PRK12844 274 MRKRYQ 279 (557)
T ss_pred HHHHhc
Confidence 555554
No 152
>PRK08401 L-aspartate oxidase; Provisional
Probab=99.10 E-value=5.9e-10 Score=121.48 Aligned_cols=156 Identities=24% Similarity=0.280 Sum_probs=89.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccC-----hHHHHHhhHhhhhcCCCe-----
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFE-----PRALNELLPQWKQEEAPI----- 177 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~-----~~~l~~ll~~~~~~~~~~----- 177 (592)
+||||||||+|||+||+.|++. |++|+|+||....+......+.+. ....+..+.++.......
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~------G~~V~liek~~~~~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~ 75 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKK------GFDVTIIGPGIKKSNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEV 75 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHC------CCeEEEEeCCCCCCCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHH
Confidence 7999999999999999999998 999999999865433333222221 111111111111000000
Q ss_pred -ee--eccCCcEEEeecCCcccCCC-----CCCCCCcEE---EcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcE
Q 007716 178 -RV--PVSSDKFWFLTKDRAFSLPS-----PFSNRGNYV---ISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKV 246 (592)
Q Consensus 178 -~~--~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~---v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v 246 (592)
.. ....+.+.++.. .++.+.. .......+. .....+.+.|.+.+++.||+++.+ .++++..++ +.+
T Consensus 76 v~~~~~~~~~~i~~L~~-~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~-g~v 152 (466)
T PRK08401 76 VWNVISKSSEAYDFLTS-LGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHARELGVNFIRG-FAEELAIKN-GKA 152 (466)
T ss_pred HHHHHHHHHHHHHHHHH-cCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHHhcCCEEEEe-EeEEEEeeC-CEE
Confidence 00 000000001100 0111100 000000000 123578899999999999999876 788887654 778
Q ss_pred EEEEeccCcccCCCCcccccccceEEEcCEEEEecCCCCcch
Q 007716 247 IGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLS 288 (592)
Q Consensus 247 ~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~vr 288 (592)
++|.+. |..+.||.||+|+|+++.+.
T Consensus 153 ~Gv~~~----------------g~~i~a~~VVLATGG~~~~~ 178 (466)
T PRK08401 153 YGVFLD----------------GELLKFDATVIATGGFSGLF 178 (466)
T ss_pred EEEEEC----------------CEEEEeCeEEECCCcCcCCC
Confidence 788763 36799999999999999753
No 153
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.10 E-value=8e-10 Score=113.15 Aligned_cols=113 Identities=27% Similarity=0.401 Sum_probs=80.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcEE
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~~ 187 (592)
|||+|||||+|||++|..|++. |++|+|+|+.. .|+..... ..+
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~------g~~v~lie~~~-~gg~~~~~-----~~~------------------------ 44 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARA------NLKTLIIEGME-PGGQLTTT-----TEV------------------------ 44 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHC------CCCEEEEeccC-CCcceeec-----ccc------------------------
Confidence 6999999999999999999998 99999999876 45421100 000
Q ss_pred EeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccc
Q 007716 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (592)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~ 267 (592)
..+|.. ...+...++...+.+.+++.|+++++ ..|+++..+++ .+.|.+.+
T Consensus 45 -------~~~~~~-----~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~~v~~~~~--~~~v~~~~-------------- 95 (300)
T TIGR01292 45 -------ENYPGF-----PEGISGPELMEKMKEQAVKFGAEIIY-EEVIKVDLSDR--PFKVKTGD-------------- 95 (300)
T ss_pred -------cccCCC-----CCCCChHHHHHHHHHHHHHcCCeEEE-EEEEEEEecCC--eeEEEeCC--------------
Confidence 000100 00123357888889999999999998 78998887653 23466543
Q ss_pred cceEEEcCEEEEecCCCCc
Q 007716 268 RGVELRGRITLLAEGCRGS 286 (592)
Q Consensus 268 ~g~~i~a~~vI~A~G~~s~ 286 (592)
|.++++|.||+|+|.++.
T Consensus 96 -~~~~~~d~liiAtG~~~~ 113 (300)
T TIGR01292 96 -GKEYTAKAVIIATGASAR 113 (300)
T ss_pred -CCEEEeCEEEECCCCCcc
Confidence 468999999999998764
No 154
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=99.10 E-value=1.5e-09 Score=121.54 Aligned_cols=66 Identities=24% Similarity=0.276 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHH----cCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCCCcc
Q 007716 212 SQLVRWLGGKAEE----LGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (592)
Q Consensus 212 ~~l~~~L~~~a~~----~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~v 287 (592)
..+...|.+.+++ .||+|++++.+++++.+++|+|+||.+.+ ..+|+. ..+.||.||+|||+.+.+
T Consensus 129 ~~i~~~L~~~~~~~~~~~gV~i~~~t~v~~Li~dd~grV~GV~~~~---~~~g~~-------~~i~AkaVVLATGG~g~~ 198 (603)
T TIGR01811 129 QQLLLALDSALRRQIAAGLVEKYEGWEMLDIIVVDGNRARGIIARN---LVTGEI-------ETHSADAVILATGGYGNV 198 (603)
T ss_pred hHHHHHHHHHHHhhhccCCcEEEeCcEEEEEEEcCCCEEEEEEEEE---CCCCcE-------EEEEcCEEEECCCCCcCc
Confidence 4566666665544 37999999999999987667899998754 123432 578999999999998764
No 155
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.10 E-value=8.7e-10 Score=119.47 Aligned_cols=51 Identities=27% Similarity=0.484 Sum_probs=46.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCC-CCCcccccCccChHHH
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAE-VGAHIISGNVFEPRAL 163 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~-~g~~~~~g~~i~~~~l 163 (592)
+|||+||||||||++||+.|+++ |.+|+|+||.+. +|+.|++.+|++.+.+
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~------g~~V~liE~~~~~~GG~c~~~gciP~k~~ 54 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASA------GKKVALVEESKAMYGGTCINIGCIPTKTL 54 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhC------CCEEEEEecCCcccceeeecCccccchHh
Confidence 69999999999999999999999 999999999864 6988888899987765
No 156
>PRK09077 L-aspartate oxidase; Provisional
Probab=99.09 E-value=2e-09 Score=119.34 Aligned_cols=160 Identities=17% Similarity=0.262 Sum_probs=93.4
Q ss_pred cccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcc-cccCccC----h-HHHHHhhHhhh-------
Q 007716 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI-ISGNVFE----P-RALNELLPQWK------- 171 (592)
Q Consensus 105 ~~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~-~~g~~i~----~-~~l~~ll~~~~------- 171 (592)
..++||||||+|.|||+||+.+++ +.+|+||||....++++ .+++.+. + ...+..+.+..
T Consensus 6 ~~~~DVlVVG~G~AGl~AA~~aa~-------~~~VilveK~~~~~g~t~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~ 78 (536)
T PRK09077 6 EHQCDVLIIGSGAAGLSLALRLAE-------HRRVAVLSKGPLSEGSTFYAQGGIAAVLDETDSIESHVEDTLIAGAGLC 78 (536)
T ss_pred cccCCEEEECchHHHHHHHHHHHH-------CCCEEEEeccCCCCCChhhccCCeeeccCCCccHHHHHHHHHHHccCCC
Confidence 357999999999999999999986 57999999998766543 3333321 1 11111111111
Q ss_pred --------------------hcCCCeeeeccCCcEEEeecCCcccCCCCCCCCCcEEE-----cHHHHHHHHHHHHHHc-
Q 007716 172 --------------------QEEAPIRVPVSSDKFWFLTKDRAFSLPSPFSNRGNYVI-----SLSQLVRWLGGKAEEL- 225 (592)
Q Consensus 172 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-----~~~~l~~~L~~~a~~~- 225 (592)
..+.++......... ..+............++ ....+...|.+++.+.
T Consensus 79 d~~~v~~~~~~~~~~i~~L~~~Gv~f~~~~~~~g~------~~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~ 152 (536)
T PRK09077 79 DEDAVRFIAENAREAVQWLIDQGVPFTTDEQANGE------EGYHLTREGGHSHRRILHAADATGKAVQTTLVERARNHP 152 (536)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCcc------ccccccCCCCccCCceEecCCCCHHHHHHHHHHHHHhCC
Confidence 111111100000000 00000000000000011 2357788888888765
Q ss_pred CCEEecCceEEEEEEcC-----CCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCCCcc
Q 007716 226 GVEIYPGFAASEILYDA-----DNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (592)
Q Consensus 226 Gv~i~~g~~v~~i~~~~-----~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~v 287 (592)
||+|+.++.+++++.++ +++|+||...+ ..+|+. ..+.||.||+|+|+.+.+
T Consensus 153 ~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~---~~~g~~-------~~i~Ak~VVlATGG~~~~ 209 (536)
T PRK09077 153 NITVLERHNAIDLITSDKLGLPGRRVVGAYVLN---RNKERV-------ETIRAKFVVLATGGASKV 209 (536)
T ss_pred CcEEEeeEEeeeeeecccccCCCCEEEEEEEEE---CCCCcE-------EEEecCeEEECCCCCCCC
Confidence 89999999999998754 37888988754 123332 578999999999999864
No 157
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.09 E-value=2.9e-09 Score=118.52 Aligned_cols=70 Identities=19% Similarity=0.284 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcC-EEEEecCCCCcchHHH
Q 007716 213 QLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGR-ITLLAEGCRGSLSEKL 291 (592)
Q Consensus 213 ~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~-~vI~A~G~~s~vr~~l 291 (592)
.+...|.+.+++.||+|++++.+++++.++ ++|++|.... +|+. ..++|+ .||+|+|+...- +.|
T Consensus 209 ~~~~~L~~~~~~~gv~v~~~t~v~~l~~~~-g~v~Gv~~~~-----~g~~-------~~i~A~~~VIlAtGG~~~n-~~m 274 (557)
T PRK07843 209 ALAAGLRIGLQRAGVPVLLNTPLTDLYVED-GRVTGVHAAE-----SGEP-------QLIRARRGVILASGGFEHN-EQM 274 (557)
T ss_pred HHHHHHHHHHHcCCCEEEeCCEEEEEEEeC-CEEEEEEEEe-----CCcE-------EEEEeceeEEEccCCcCcC-HHH
Confidence 456677788888999999999999999864 7888887642 2322 578896 699999999883 455
Q ss_pred HHHcC
Q 007716 292 IKNFK 296 (592)
Q Consensus 292 ~~~~~ 296 (592)
.+.+.
T Consensus 275 ~~~~~ 279 (557)
T PRK07843 275 RAKYQ 279 (557)
T ss_pred HHHhc
Confidence 55553
No 158
>PLN02507 glutathione reductase
Probab=99.09 E-value=2.5e-10 Score=125.23 Aligned_cols=145 Identities=18% Similarity=0.291 Sum_probs=86.4
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcC---------CCCCCCcccccCccChHHHHHhhHh---hhhc
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEK---------GAEVGAHIISGNVFEPRALNELLPQ---WKQE 173 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk---------~~~~g~~~~~g~~i~~~~l~~ll~~---~~~~ 173 (592)
.+|||+||||||+|+.+|..|+++ |++|+|+|+ ...+|+.|++.+|++.+.|...... ....
T Consensus 24 ~~yDvvVIG~GpaG~~aA~~a~~~------G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~ 97 (499)
T PLN02507 24 YDFDLFVIGAGSGGVRAARFSANF------GAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDA 97 (499)
T ss_pred cccCEEEECCCHHHHHHHHHHHHC------CCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHH
Confidence 469999999999999999999999 999999996 3568999999999999887433211 1110
Q ss_pred CCCeeeeccCCcEEEeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEecc
Q 007716 174 EAPIRVPVSSDKFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTND 253 (592)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d 253 (592)
. .+.... .....+++...+..... ....+...+.+.+.+.||+++.+. +..+ +. .. +.|++.+
T Consensus 98 ~-~~G~~~--------~~~~~id~~~~~~~~~~---~~~~~~~~~~~~l~~~gV~~i~g~-a~~v--d~-~~-v~V~~~~ 160 (499)
T PLN02507 98 K-NYGWEI--------NEKVDFNWKKLLQKKTD---EILRLNGIYKRLLANAGVKLYEGE-GKIV--GP-NE-VEVTQLD 160 (499)
T ss_pred H-hcCccc--------CCCCccCHHHHHHHHHH---HHHHHHHHHHHHHHhCCcEEEEEE-EEEe--cC-CE-EEEEeCC
Confidence 0 000000 00001111100000000 012333444555666899999874 3332 22 22 2455443
Q ss_pred CcccCCCCcccccccceEEEcCEEEEecCCCCc
Q 007716 254 MGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 286 (592)
Q Consensus 254 ~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~ 286 (592)
|+. .++.+|.||+|+|+++.
T Consensus 161 ------g~~-------~~~~~d~LIIATGs~p~ 180 (499)
T PLN02507 161 ------GTK-------LRYTAKHILIATGSRAQ 180 (499)
T ss_pred ------CcE-------EEEEcCEEEEecCCCCC
Confidence 221 36899999999998764
No 159
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.09 E-value=7.8e-10 Score=132.42 Aligned_cols=179 Identities=20% Similarity=0.251 Sum_probs=100.6
Q ss_pred ccccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCccc-ccCccC---hH---------HHHHhhHh-
Q 007716 104 ESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII-SGNVFE---PR---------ALNELLPQ- 169 (592)
Q Consensus 104 ~~~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~-~g~~i~---~~---------~l~~ll~~- 169 (592)
++.++||||||+|.||++||+.+++. |++|+||||....|+.+. +++.+. .+ ..+.+..+
T Consensus 406 ~t~~~DVvVVG~G~AGl~AAi~Aae~------Ga~VivlEK~~~~GG~s~~s~ggi~~~~t~~q~~~gi~D~~~~~~~d~ 479 (1167)
T PTZ00306 406 GSLPARVIVVGGGLAGCSAAIEAASC------GAQVILLEKEAKLGGNSAKATSGINGWGTRAQAKQDVLDGGKFFERDT 479 (1167)
T ss_pred cCCCCCEEEECCCHHHHHHHHHHHHC------CCcEEEEEccCCCCCchhhcccccccCCchhhhhhcccccHHHHHHHH
Confidence 35679999999999999999999998 999999999988877642 332221 00 00001111
Q ss_pred hhhc-C---CC--eeeec--cCCcEEEeec-CC---------cccCCCCCC---CCCcEEE-cHHHHHHHHHHHHHH---
Q 007716 170 WKQE-E---AP--IRVPV--SSDKFWFLTK-DR---------AFSLPSPFS---NRGNYVI-SLSQLVRWLGGKAEE--- 224 (592)
Q Consensus 170 ~~~~-~---~~--~~~~~--~~~~~~~~~~-~~---------~~~~~~~~~---~~~~~~v-~~~~l~~~L~~~a~~--- 224 (592)
+... . .+ +...+ ..+.+.|+.+ +. ....+.... ...+... ....+...|.+.+++
T Consensus 480 ~~~~~~~~~d~~lv~~~~~~s~e~idwL~~~Gv~f~~~~~~gg~~~~r~~~~~~~~~g~~~~~G~~i~~~l~~~~~~~~~ 559 (1167)
T PTZ00306 480 HLSGKGGHCDPGLVKTLSVKSADAISWLSSLGVPLTVLSQLGGASRKRCHRAPDKKDGTPVPIGFTIMRTLEDHIRTKLS 559 (1167)
T ss_pred HHhccCCCCCHHHHHHHHHhhHHHHHHHHHcCCCceeeeccCCCCCCceeecCcccCCCcCCcHHHHHHHHHHHHHhhcc
Confidence 0000 0 00 00000 0000001100 00 000000000 0000001 124567777777765
Q ss_pred cCCEEecCceEEEEEEcCC----C----cEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCCCcchH--HHHHH
Q 007716 225 LGVEIYPGFAASEILYDAD----N----KVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSE--KLIKN 294 (592)
Q Consensus 225 ~Gv~i~~g~~v~~i~~~~~----g----~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~vr~--~l~~~ 294 (592)
.||+|++++++++++.+++ | +|+||...+.+ +.+|+. ..+.||.||+|||+.+.... ++.+.
T Consensus 560 ~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~-~~~g~~-------~~i~AkaVILATGGf~~N~e~~~m~~~ 631 (1167)
T PTZ00306 560 GRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQAS-DASGQV-------MDLLADAVILATGGFSNDHTPNSLLRE 631 (1167)
T ss_pred CCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecc-cCCCcE-------EEEEeceEEEecCCcccCccHHHHHHH
Confidence 4899999999999998742 2 78899876410 124443 67999999999999997542 45555
Q ss_pred cC
Q 007716 295 FK 296 (592)
Q Consensus 295 ~~ 296 (592)
+.
T Consensus 632 y~ 633 (1167)
T PTZ00306 632 YA 633 (1167)
T ss_pred hC
Confidence 54
No 160
>PRK14694 putative mercuric reductase; Provisional
Probab=99.08 E-value=1.4e-09 Score=118.92 Aligned_cols=54 Identities=15% Similarity=0.402 Sum_probs=49.1
Q ss_pred cccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHH
Q 007716 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNE 165 (592)
Q Consensus 105 ~~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ 165 (592)
...|||+||||||||++||+.|++. |++|+|||+. .+|+.|++.+|++.+.+.+
T Consensus 4 ~~~~dviVIGaG~aG~~aA~~l~~~------g~~v~lie~~-~~GGtc~n~GciPsk~l~~ 57 (468)
T PRK14694 4 DNNLHIAVIGSGGSAMAAALKATER------GARVTLIERG-TIGGTCVNIGCVPSKIMIR 57 (468)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhC------CCcEEEEEcc-ccccceecCCccccHHHHH
Confidence 3579999999999999999999999 9999999986 5899999999999988744
No 161
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=99.08 E-value=8.7e-10 Score=123.19 Aligned_cols=93 Identities=18% Similarity=0.146 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEc-CEEEEecCCCCcchH
Q 007716 211 LSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRG-RITLLAEGCRGSLSE 289 (592)
Q Consensus 211 ~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a-~~vI~A~G~~s~vr~ 289 (592)
...+...|.+.+++.||+|++++.+++++.++ ++|++|.+.+ +|+. .++.| |.||+|+|+.+.. +
T Consensus 220 G~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~~-g~V~GV~~~~-----~g~~-------~~i~A~~~VVlAtGg~~~n-~ 285 (578)
T PRK12843 220 GNALIGRLLYSLRARGVRILTQTDVESLETDH-GRVIGATVVQ-----GGVR-------RRIRARGGVVLATGGFNRH-P 285 (578)
T ss_pred cHHHHHHHHHHHHhCCCEEEeCCEEEEEEeeC-CEEEEEEEec-----CCeE-------EEEEccceEEECCCCcccC-H
Confidence 34678889999999999999999999998764 7888987753 2221 46786 7899999999985 4
Q ss_pred HHHHHcCCCcc---cccCcccceeeEEEEEe
Q 007716 290 KLIKNFKLREK---SHAQHQTYALGIKEVWE 317 (592)
Q Consensus 290 ~l~~~~~l~~~---~~~~~~~~~~g~~~~~~ 317 (592)
+|++++..... ....+...|.|++....
T Consensus 286 em~~~~~p~~~~~~~~~~~~~tGdGi~ma~~ 316 (578)
T PRK12843 286 QLRRELLPAAVARYSPGAPGHTGAAIDLALD 316 (578)
T ss_pred HHHHHhCCCCcccccCCCCCCCcHHHHHHHH
Confidence 55555533210 11223445666654433
No 162
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=99.08 E-value=2.9e-10 Score=124.24 Aligned_cols=146 Identities=16% Similarity=0.189 Sum_probs=86.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCC--------CCCCcccccCccChHHHHHhhHhhhhcCCCee
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA--------EVGAHIISGNVFEPRALNELLPQWKQEEAPIR 178 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~--------~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~ 178 (592)
+||||||||||+|+.+|+.+++. |.+|+|+|+.. .+|+.|++-+|++.+.|...-........
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~------G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~--- 72 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADY------GAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKD--- 72 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHC------CCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhh---
Confidence 58999999999999999999999 99999999731 47999999999999987543221111000
Q ss_pred eeccCCcEEEe-ecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCccc
Q 007716 179 VPVSSDKFWFL-TKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIA 257 (592)
Q Consensus 179 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~ 257 (592)
...+.+. .....++++..+...... + ..+.......++..||+++.|... ..++ +.| .|...
T Consensus 73 ----~~~~g~~~~~~~~~d~~~~~~~~~~~-v--~~~~~~~~~~~~~~~v~~i~G~a~---f~~~-~~v-~v~~~----- 135 (484)
T TIGR01438 73 ----SRNYGWNVEETVKHDWNRLSEAVQNH-I--GSLNWGYRVALREKKVNYENAYAE---FVDK-HRI-KATNK----- 135 (484)
T ss_pred ----hhhcCcccCCCcccCHHHHHHHHHHH-H--HHHHHHHHHHHhhCCcEEEEEEEE---EcCC-CEE-EEecc-----
Confidence 0000000 000111111111100000 0 223334444566789999988764 2222 333 34321
Q ss_pred CCCCcccccccceEEEcCEEEEecCCCCc
Q 007716 258 KDGSKKENFQRGVELRGRITLLAEGCRGS 286 (592)
Q Consensus 258 ~~G~~~~~f~~g~~i~a~~vI~A~G~~s~ 286 (592)
+|+ +.++++|.||+|+|+++.
T Consensus 136 -~g~-------~~~~~~d~lVIATGs~p~ 156 (484)
T TIGR01438 136 -KGK-------EKIYSAERFLIATGERPR 156 (484)
T ss_pred -CCC-------ceEEEeCEEEEecCCCCC
Confidence 232 257999999999999764
No 163
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=99.07 E-value=1.6e-09 Score=121.16 Aligned_cols=68 Identities=29% Similarity=0.344 Sum_probs=53.4
Q ss_pred EcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEc-CEEEEecCCCCcc
Q 007716 209 ISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRG-RITLLAEGCRGSL 287 (592)
Q Consensus 209 v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a-~~vI~A~G~~s~v 287 (592)
+....|...|.+.+++.||+|++++.|++++.++ ++|++|.+.+ ++. ..+++| |.||+|+|+++.-
T Consensus 214 ~~g~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~~-g~v~GV~~~~-----~~~-------~~~i~a~k~VVlAtGg~~~n 280 (581)
T PRK06134 214 VNGNALVARLLKSAEDLGVRIWESAPARELLRED-GRVAGAVVET-----PGG-------LQEIRARKGVVLAAGGFPHD 280 (581)
T ss_pred cCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeC-CEEEEEEEEE-----CCc-------EEEEEeCCEEEEcCCCcccC
Confidence 3445678899999999999999999999998764 7888887643 111 146899 9999999999974
Q ss_pred hH
Q 007716 288 SE 289 (592)
Q Consensus 288 r~ 289 (592)
..
T Consensus 281 ~~ 282 (581)
T PRK06134 281 PA 282 (581)
T ss_pred HH
Confidence 33
No 164
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.07 E-value=1.7e-09 Score=120.87 Aligned_cols=65 Identities=28% Similarity=0.353 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcC-EEEEecCCCCcchH
Q 007716 212 SQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGR-ITLLAEGCRGSLSE 289 (592)
Q Consensus 212 ~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~-~vI~A~G~~s~vr~ 289 (592)
..+.+.|.+.+++.|++|++++.|+++..++ ++|++|.+.+ .++ ...+.++ .||+|+|..+.-..
T Consensus 214 ~~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~~-g~V~GV~~~~----~~~--------~~~i~a~k~VVlAtGg~~~n~~ 279 (574)
T PRK12842 214 NALAARLAKSALDLGIPILTGTPARELLTEG-GRVVGARVID----AGG--------ERRITARRGVVLACGGFSHDLA 279 (574)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEeeC-CEEEEEEEEc----CCc--------eEEEEeCCEEEEcCCCccchHH
Confidence 4577778888999999999999999998875 7888888754 111 1357885 79999999987443
No 165
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=99.07 E-value=3e-10 Score=123.96 Aligned_cols=52 Identities=35% Similarity=0.609 Sum_probs=47.8
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHh
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNEL 166 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l 166 (592)
|||+||||||||++||+.|+++ |++|+|+||.. +|+.|++-+|++.+.|.+.
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~------g~~v~lie~~~-~GG~c~n~gciPsk~l~~~ 52 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAEL------GASVAMVERGP-LGGTCVNVGCVPSKMLLRA 52 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHC------CCeEEEEeCCc-ccCCeeeecEEccHHHHHH
Confidence 7999999999999999999999 99999999875 8999999999999887544
No 166
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.07 E-value=4.1e-08 Score=108.36 Aligned_cols=61 Identities=18% Similarity=0.197 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCCCcch
Q 007716 212 SQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLS 288 (592)
Q Consensus 212 ~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~vr 288 (592)
..+.+.|.+.+++.|++|++++.|++|..++ +.+++|++.+ |.++.||.||.|.+.+..+.
T Consensus 219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~-~~~~~V~~~~---------------g~~~~ad~VI~a~~~~~~~~ 279 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGELRLNAEVIRIETEG-GRATAVHLAD---------------GERLDADAVVSNADLHHTYR 279 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEEEEeeC-CEEEEEEECC---------------CCEEECCEEEECCcHHHHHH
Confidence 6788899999999999999999999998776 5677888865 56899999999998765443
No 167
>PRK08071 L-aspartate oxidase; Provisional
Probab=99.06 E-value=2.3e-09 Score=117.97 Aligned_cols=161 Identities=17% Similarity=0.205 Sum_probs=91.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcc-cccCccC-----hHHHHHhhHhhhhcCCCee--
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI-ISGNVFE-----PRALNELLPQWKQEEAPIR-- 178 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~-~~g~~i~-----~~~l~~ll~~~~~~~~~~~-- 178 (592)
++||||||+|.|||+||+.+++ |.+|+||||....++++ .+++.+. ....+..+.++........
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-------g~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~d~ 75 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-------EYNVIIITKKTKRNSNSHLAQGGIAAAVATYDSPNDHFEDTLVAGCHHNNE 75 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-------CCCEEEEeccCCCCCCchhcCccceecccCCCCHHHHHHHHHHhccCcCCH
Confidence 6899999999999999999864 88999999998766654 2333331 1111112211111000000
Q ss_pred ----e----------eccCCcEEEe-ecCCcccCCCC-CC-CCCcEE----EcHHHHHHHHHHHHHHcCCEEecCceEEE
Q 007716 179 ----V----------PVSSDKFWFL-TKDRAFSLPSP-FS-NRGNYV----ISLSQLVRWLGGKAEELGVEIYPGFAASE 237 (592)
Q Consensus 179 ----~----------~~~~~~~~~~-~~~~~~~~~~~-~~-~~~~~~----v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~ 237 (592)
. ......+.|. +.+..+..... .+ ....+. .....+.+.|.+.++ .||+|++++.+++
T Consensus 76 ~~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~gd~~g~~i~~~L~~~~~-~gV~i~~~~~v~~ 154 (510)
T PRK08071 76 RAVRYLVEEGPKEIQELIENGMPFDGDETGPLHLGKEGAHRKRRILHAGGDATGKNLLEHLLQELV-PHVTVVEQEMVID 154 (510)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccccCCCCceeeccCcCccCCeEEecCCCCcHHHHHHHHHHHHh-cCCEEEECeEhhh
Confidence 0 0000001110 00000000000 00 000000 113467888888776 6899999999999
Q ss_pred EEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCCCcc
Q 007716 238 ILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (592)
Q Consensus 238 i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~v 287 (592)
+..++ +.+.||.+.+ .+|+. ..++||.||+|+|+.+.+
T Consensus 155 Li~~~-g~v~Gv~~~~----~~g~~-------~~i~Ak~VVlATGG~~~~ 192 (510)
T PRK08071 155 LIIEN-GRCIGVLTKD----SEGKL-------KRYYADYVVLASGGCGGL 192 (510)
T ss_pred eeecC-CEEEEEEEEE----CCCcE-------EEEEcCeEEEecCCCccc
Confidence 98764 7888888754 23332 478999999999998863
No 168
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=99.06 E-value=3.1e-09 Score=115.32 Aligned_cols=79 Identities=13% Similarity=0.143 Sum_probs=56.3
Q ss_pred cEEEcHHHHHHHHHHHHHH-cCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCC
Q 007716 206 NYVISLSQLVRWLGGKAEE-LGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCR 284 (592)
Q Consensus 206 ~~~v~~~~l~~~L~~~a~~-~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~ 284 (592)
...++...+.+.|.+.+.+ .|++|+++++|+++..++++.+ .|.+.+. .+|+ ..+++||+||+|.|++
T Consensus 178 ~~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w-~v~v~~t---~~g~-------~~~i~Ad~VV~AAGaw 246 (497)
T PRK13339 178 GTDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGW-EVTVKDR---NTGE-------KREQVADYVFIGAGGG 246 (497)
T ss_pred ceecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCE-EEEEEec---CCCc-------eEEEEcCEEEECCCcc
Confidence 4568899999999999965 4899999999999987733433 3432110 0111 1368999999999999
Q ss_pred CcchHHHHHHcCCC
Q 007716 285 GSLSEKLIKNFKLR 298 (592)
Q Consensus 285 s~vr~~l~~~~~l~ 298 (592)
+. .+.+.+|+.
T Consensus 247 S~---~La~~~Gi~ 257 (497)
T PRK13339 247 AI---PLLQKSGIP 257 (497)
T ss_pred hH---HHHHHcCCC
Confidence 74 566666765
No 169
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.06 E-value=1.9e-10 Score=114.02 Aligned_cols=151 Identities=18% Similarity=0.319 Sum_probs=101.8
Q ss_pred ccccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccC
Q 007716 104 ESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSS 183 (592)
Q Consensus 104 ~~~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~ 183 (592)
...+||.+|||||.+|+++|.+++.. |.+|.|+|..-.+|++|++-+|++.+.| |.............
T Consensus 17 ~~k~fDylvIGgGSGGvasARrAa~~------GAkv~l~E~~f~lGGTCVn~GCVPKKvm------~~~a~~~~~~~da~ 84 (478)
T KOG0405|consen 17 DVKDFDYLVIGGGSGGVASARRAASH------GAKVALCELPFGLGGTCVNVGCVPKKVM------WYAADYSEEMEDAK 84 (478)
T ss_pred cccccceEEEcCCcchhHHhHHHHhc------CceEEEEecCCCcCceEEeeccccceeE------EehhhhhHHhhhhh
Confidence 34589999999999999999999999 9999999988789999999999987654 21110000000011
Q ss_pred CcEEEeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcc
Q 007716 184 DKFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKK 263 (592)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~ 263 (592)
+.-|.......++|+....++..|+ .+|...+.+.+.+.+|+++.|..- +.+++.| .|...| |+.
T Consensus 85 ~yG~~~~~~~~fdW~~ik~krdayi---~RLngIY~~~L~k~~V~~i~G~a~----f~~~~~v-~V~~~d------~~~- 149 (478)
T KOG0405|consen 85 DYGFPINEEGSFDWKVIKQKRDAYI---LRLNGIYKRNLAKAAVKLIEGRAR----FVSPGEV-EVEVND------GTK- 149 (478)
T ss_pred hcCCccccccCCcHHHHHhhhhHHH---HHHHHHHHhhccccceeEEeeeEE----EcCCCce-EEEecC------Cee-
Confidence 1112222334455554444455565 566666777777788999998754 3334555 566655 321
Q ss_pred cccccceEEEcCEEEEecCCCCcc
Q 007716 264 ENFQRGVELRGRITLLAEGCRGSL 287 (592)
Q Consensus 264 ~~f~~g~~i~a~~vI~A~G~~s~v 287 (592)
..++|+.+++|+|+++..
T Consensus 150 ------~~Ytak~iLIAtGg~p~~ 167 (478)
T KOG0405|consen 150 ------IVYTAKHILIATGGRPII 167 (478)
T ss_pred ------EEEecceEEEEeCCccCC
Confidence 458999999999998864
No 170
>PRK07233 hypothetical protein; Provisional
Probab=99.05 E-value=1.1e-07 Score=102.80 Aligned_cols=56 Identities=21% Similarity=0.232 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCC
Q 007716 212 SQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCR 284 (592)
Q Consensus 212 ~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~ 284 (592)
..+.+.|.+.+++.|++|+++++|++|+.++ +.+..+... +.+++||.||.|....
T Consensus 198 ~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~-~~~~~~~~~----------------~~~~~ad~vI~a~p~~ 253 (434)
T PRK07233 198 ATLIDALAEAIEARGGEIRLGTPVTSVVIDG-GGVTGVEVD----------------GEEEDFDAVISTAPPP 253 (434)
T ss_pred HHHHHHHHHHHHhcCceEEeCCCeeEEEEcC-CceEEEEeC----------------CceEECCEEEECCCHH
Confidence 4678888888888899999999999998876 445444432 3679999999999864
No 171
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.05 E-value=1.7e-09 Score=119.57 Aligned_cols=115 Identities=28% Similarity=0.414 Sum_probs=84.2
Q ss_pred cccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCC
Q 007716 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSD 184 (592)
Q Consensus 105 ~~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~ 184 (592)
...|||+||||||||++||+.|++. |++|+|+|+. +|+.+.... .+..
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~------G~~v~li~~~--~GG~~~~~~------------~~~~------------ 256 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARK------GIRTGIVAER--FGGQVLDTM------------GIEN------------ 256 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHC------CCcEEEEecC--CCCeeeccC------------cccc------------
Confidence 3469999999999999999999999 9999999864 565321000 0000
Q ss_pred cEEEeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCccc
Q 007716 185 KFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKE 264 (592)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~ 264 (592)
+ ..++ .....++.+.|.+++++.|++++.+++|.++..+++ .+.|.+.+
T Consensus 257 ---~------~~~~---------~~~~~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~~--~~~V~~~~----------- 305 (517)
T PRK15317 257 ---F------ISVP---------ETEGPKLAAALEEHVKEYDVDIMNLQRASKLEPAAG--LIEVELAN----------- 305 (517)
T ss_pred ---c------CCCC---------CCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCC--eEEEEECC-----------
Confidence 0 0000 123468899999999999999999999999987653 23466544
Q ss_pred ccccceEEEcCEEEEecCCCCc
Q 007716 265 NFQRGVELRGRITLLAEGCRGS 286 (592)
Q Consensus 265 ~f~~g~~i~a~~vI~A~G~~s~ 286 (592)
|.++.+|.||+|+|+++.
T Consensus 306 ----g~~i~a~~vViAtG~~~r 323 (517)
T PRK15317 306 ----GAVLKAKTVILATGARWR 323 (517)
T ss_pred ----CCEEEcCEEEECCCCCcC
Confidence 468999999999999763
No 172
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.04 E-value=1.5e-09 Score=117.84 Aligned_cols=51 Identities=27% Similarity=0.459 Sum_probs=46.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCC-CCCCcccccCccChHHH
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA-EVGAHIISGNVFEPRAL 163 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~-~~g~~~~~g~~i~~~~l 163 (592)
.||||||||||||++||+.|++. |++|+|+|+.+ .+|+.|.+.+|++.+.+
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~------g~~V~lie~~~~~~GG~~~~~gcip~k~l 54 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKA------GWRVALIEQSNAMYGGTCINIGCIPTKTL 54 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHC------CCeEEEEcCCCCccceeEeeccccchHHH
Confidence 59999999999999999999999 99999999976 47999988999988765
No 173
>PRK13748 putative mercuric reductase; Provisional
Probab=99.03 E-value=2.6e-09 Score=119.54 Aligned_cols=53 Identities=19% Similarity=0.424 Sum_probs=48.9
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHH
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNE 165 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ 165 (592)
.+||||||||||||++||+.|++. |++|+|||+. .+|+.|++.+|++.+.|.+
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~------G~~v~lie~~-~~GG~c~n~gciPsk~l~~ 149 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQ------GARVTLIERG-TIGGTCVNVGCVPSKIMIR 149 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhC------CCeEEEEecC-cceeeccccCccccHHHHH
Confidence 369999999999999999999999 9999999987 7899999999999988744
No 174
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=99.02 E-value=1.7e-09 Score=120.52 Aligned_cols=65 Identities=12% Similarity=0.192 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHcCCEEecCceEEEEEEcCC--CcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCCCc
Q 007716 212 SQLVRWLGGKAEELGVEIYPGFAASEILYDAD--NKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 286 (592)
Q Consensus 212 ~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~--g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~ 286 (592)
..+.+.+...+.+.+++|+.++.+++++.+++ |+|+||...+ .++|+. ..+.||.||+|||+.+.
T Consensus 126 ~~~~r~l~~~l~~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~---~~~g~~-------~~i~AkaVVLATGG~~~ 192 (614)
T TIGR02061 126 ESYKPIVAEAAKNALGDIFERIFIVKLLLDKNTPNRIAGAVGFN---VRANEV-------HVFKAKTVIVAAGGAVN 192 (614)
T ss_pred hhHHHHHHHHHHhCCCeEEcccEEEEEEecCCCCCeEEEEEEEE---eCCCcE-------EEEECCEEEECCCcccc
Confidence 35556667677777789999999999998653 6899988644 123432 57899999999999874
No 175
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=99.02 E-value=5.4e-09 Score=103.83 Aligned_cols=161 Identities=24% Similarity=0.302 Sum_probs=101.5
Q ss_pred ccccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccc-c--CccCh--------HHHHHhhHhhhh
Q 007716 104 ESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIIS-G--NVFEP--------RALNELLPQWKQ 172 (592)
Q Consensus 104 ~~~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~-g--~~i~~--------~~l~~ll~~~~~ 172 (592)
+.+..||+|||||+-|+++|+.|++. |.++.++|+-+.+-....+ | -.|.+ +...+.+..|..
T Consensus 4 ~~~~~~viiVGAGVfG~stAyeLaK~------g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~ 77 (399)
T KOG2820|consen 4 MVKSRDVIIVGAGVFGLSTAYELAKR------GDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRN 77 (399)
T ss_pred cccceeEEEEcccccchHHHHHHHhc------CCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHh
Confidence 44679999999999999999999999 9999999987643211111 1 11221 122344566665
Q ss_pred cCCCeeeeccCCcEEE--------------------------ee-cC------CcccCCCC---CCCCCcEEEcHHHHHH
Q 007716 173 EEAPIRVPVSSDKFWF--------------------------LT-KD------RAFSLPSP---FSNRGNYVISLSQLVR 216 (592)
Q Consensus 173 ~~~~~~~~~~~~~~~~--------------------------~~-~~------~~~~~~~~---~~~~~~~~v~~~~l~~ 216 (592)
........+......+ +. +. ..+.++.. ..+..+.++...+-.+
T Consensus 78 ~~~~~g~~~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~kslk 157 (399)
T KOG2820|consen 78 LPEESGVKLHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKSLK 157 (399)
T ss_pred ChhhhceeecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccccccEeeHHHHHH
Confidence 4221111111100000 00 00 01112211 1122244567778888
Q ss_pred HHHHHHHHcCCEEecCceEEEEEEc-CCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCCC
Q 007716 217 WLGGKAEELGVEIYPGFAASEILYD-ADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRG 285 (592)
Q Consensus 217 ~L~~~a~~~Gv~i~~g~~v~~i~~~-~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s 285 (592)
.|...+++.|+.++.|.+|+.+... +++..+.|.|.+ |..+.||.+|++.|+|-
T Consensus 158 ~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~---------------gs~Y~akkiI~t~GaWi 212 (399)
T KOG2820|consen 158 ALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTD---------------GSIYHAKKIIFTVGAWI 212 (399)
T ss_pred HHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEecc---------------CCeeecceEEEEecHHH
Confidence 9999999999999999999888743 335667888876 67799999999999984
No 176
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=99.02 E-value=6.3e-10 Score=121.40 Aligned_cols=51 Identities=45% Similarity=0.695 Sum_probs=46.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHH
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALN 164 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~ 164 (592)
.|||+||||||||+++|+.|++. |++|+|||+ ..+|+.|.+-+|++.+.+.
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~------G~~v~lie~-~~~GG~~~~~gc~Psk~l~ 51 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQL------GLKVALVEK-EYLGGTCLNVGCIPTKALL 51 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhC------CCeEEEEec-CCCCCceeecCccchHHHH
Confidence 38999999999999999999999 999999999 7789999999999887663
No 177
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=99.01 E-value=9.9e-10 Score=123.12 Aligned_cols=56 Identities=27% Similarity=0.371 Sum_probs=50.4
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCC-CCCCCcccccCccChHHHHHhh
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKG-AEVGAHIISGNVFEPRALNELL 167 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~-~~~g~~~~~g~~i~~~~l~~ll 167 (592)
.+|||+|||+||+|.++|+.++++ |++|+|||+. ..+|+.|++.+|++.+.|.+.-
T Consensus 115 ~~yDviVIG~G~gG~~aA~~aa~~------G~kV~lie~~~~~lGGtCvn~GCiPsK~l~~~a 171 (659)
T PTZ00153 115 EEYDVGIIGCGVGGHAAAINAMER------GLKVIIFTGDDDSIGGTCVNVGCIPSKALLYAT 171 (659)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHC------CCcEEEEeCCCCccccceeEeCCcchHHHHHHH
Confidence 479999999999999999999999 9999999975 3689999999999999885543
No 178
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.01 E-value=2.2e-09 Score=114.53 Aligned_cols=144 Identities=21% Similarity=0.235 Sum_probs=93.7
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccC--hHHHHHhhHhhhhcCCCeeeeccC
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFE--PRALNELLPQWKQEEAPIRVPVSS 183 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~--~~~l~~ll~~~~~~~~~~~~~~~~ 183 (592)
+..+|+|||||||||++|..|.+. |++|+|+||.+.+|+....-.... ...+ +... .+....
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~------g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~---Y~~l-------~tn~pK 68 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLRE------GHEVVVFERTDDIGGLWKYTENVEVVHSSV---YKSL-------RTNLPK 68 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHC------CCCceEEEecCCccceEeecCcccccccch---hhhh-------hccCCh
Confidence 467899999999999999999999 999999999999998542110000 0000 0000 000111
Q ss_pred CcEEEeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCC--EEecCceEEEEEEcCCCcEEEEEeccCcccCCCC
Q 007716 184 DKFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGV--EIYPGFAASEILYDADNKVIGIGTNDMGIAKDGS 261 (592)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv--~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~ 261 (592)
+.+.+ .++|.+. +...+..+..++.++|...|+..++ .|.++++|..+....+| -|.|.+.+. .+.
T Consensus 69 e~~~~------~dfpf~~-~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~g-kW~V~~~~~----~~~ 136 (448)
T KOG1399|consen 69 EMMGY------SDFPFPE-RDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKG-KWRVTTKDN----GTQ 136 (448)
T ss_pred hhhcC------CCCCCcc-cCcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCC-ceeEEEecC----Ccc
Confidence 11111 0122111 1235566778999999999999885 68899989888877644 356777651 111
Q ss_pred cccccccceEEEcCEEEEecCCC
Q 007716 262 KKENFQRGVELRGRITLLAEGCR 284 (592)
Q Consensus 262 ~~~~f~~g~~i~a~~vI~A~G~~ 284 (592)
..+.-+|.||+|+|.+
T Consensus 137 -------~~~~ifd~VvVctGh~ 152 (448)
T KOG1399|consen 137 -------IEEEIFDAVVVCTGHY 152 (448)
T ss_pred -------eeEEEeeEEEEcccCc
Confidence 1577899999999987
No 179
>PTZ00052 thioredoxin reductase; Provisional
Probab=99.00 E-value=8.1e-10 Score=121.35 Aligned_cols=52 Identities=19% Similarity=0.391 Sum_probs=46.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCC--------CCCCcccccCccChHHHH
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA--------EVGAHIISGNVFEPRALN 164 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~--------~~g~~~~~g~~i~~~~l~ 164 (592)
.|||+||||||||++||+.|+++ |++|+|+|+.. .+|+.|++-+|++.+.+.
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~------G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~ 64 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAH------GKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMH 64 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhC------CCeEEEEeccCCCCccccccccceeccccccchHHHH
Confidence 59999999999999999999999 99999999631 489999999999987663
No 180
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.99 E-value=4.2e-09 Score=117.27 Aligned_cols=112 Identities=25% Similarity=0.433 Sum_probs=79.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcE
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~ 186 (592)
.|||+|||||||||+||+.|++. |++|+|||+. ..|+.+..... +
T Consensus 4 ~yDVvIIGgGpAGL~AA~~lar~------g~~V~liE~~-~~GG~~~~~~~-----i----------------------- 48 (555)
T TIGR03143 4 IYDLIIIGGGPAGLSAGIYAGRA------KLDTLIIEKD-DFGGQITITSE-----V----------------------- 48 (555)
T ss_pred cCcEEEECCCHHHHHHHHHHHHC------CCCEEEEecC-CCCceEEeccc-----c-----------------------
Confidence 59999999999999999999998 9999999986 45653210000 0
Q ss_pred EEeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCccccc
Q 007716 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (592)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f 266 (592)
..++. .-.++...+.+.+.+++++.|++++ +..|+.+..++ ....|.+.+
T Consensus 49 --------~~~pg------~~~~~~~~l~~~l~~~~~~~gv~~~-~~~V~~i~~~~--~~~~V~~~~------------- 98 (555)
T TIGR03143 49 --------VNYPG------ILNTTGPELMQEMRQQAQDFGVKFL-QAEVLDVDFDG--DIKTIKTAR------------- 98 (555)
T ss_pred --------ccCCC------CcCCCHHHHHHHHHHHHHHcCCEEe-ccEEEEEEecC--CEEEEEecC-------------
Confidence 00000 0012345788889999999999986 66788887654 234466543
Q ss_pred ccceEEEcCEEEEecCCCCc
Q 007716 267 QRGVELRGRITLLAEGCRGS 286 (592)
Q Consensus 267 ~~g~~i~a~~vI~A~G~~s~ 286 (592)
.++.++.||+|+|+++.
T Consensus 99 ---g~~~a~~lVlATGa~p~ 115 (555)
T TIGR03143 99 ---GDYKTLAVLIATGASPR 115 (555)
T ss_pred ---CEEEEeEEEECCCCccC
Confidence 36889999999999864
No 181
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.99 E-value=4.1e-09 Score=115.82 Aligned_cols=140 Identities=25% Similarity=0.329 Sum_probs=86.5
Q ss_pred cEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeee-ccCCcEE
Q 007716 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVP-VSSDKFW 187 (592)
Q Consensus 109 DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~-~~~~~~~ 187 (592)
.|+|||||++||++|..|.+. |++|+++||.+.+||.. ...+.+.... ...+.+.
T Consensus 3 rVaVIGaG~sGL~a~k~l~e~------g~~~~~fE~~~~iGG~W------------------~~~~~~~~g~~~~y~sl~ 58 (531)
T PF00743_consen 3 RVAVIGAGPSGLAAAKNLLEE------GLEVTCFEKSDDIGGLW------------------RYTENPEDGRSSVYDSLH 58 (531)
T ss_dssp EEEEE--SHHHHHHHHHHHHT------T-EEEEEESSSSSSGGG------------------CHSTTCCCSEGGGSTT-B
T ss_pred EEEEECccHHHHHHHHHHHHC------CCCCeEEecCCCCCccC------------------eeCCcCCCCccccccceE
Confidence 599999999999999999998 99999999999999843 2111100000 0000010
Q ss_pred EeecCCcc---cCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCC--EEecCceEEEEEEcCCC---cEEEEEeccCcccCC
Q 007716 188 FLTKDRAF---SLPSPFSNRGNYVISLSQLVRWLGGKAEELGV--EIYPGFAASEILYDADN---KVIGIGTNDMGIAKD 259 (592)
Q Consensus 188 ~~~~~~~~---~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv--~i~~g~~v~~i~~~~~g---~v~~V~~~d~g~~~~ 259 (592)
...+.... ++|.+. ....| .++.++.++|...|+..++ .|.++++|+++...+|. ..+.|++.+ +
T Consensus 59 ~n~sk~~~~fsdfp~p~-~~p~f-~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~-----~ 131 (531)
T PF00743_consen 59 TNTSKEMMAFSDFPFPE-DYPDF-PSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTEN-----D 131 (531)
T ss_dssp -SS-GGGSCCTTS-HCC-CCSSS-EBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETT-----T
T ss_pred EeeCchHhcCCCcCCCC-CCCCC-CCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeec-----C
Confidence 00000000 122111 11233 5788999999999999886 49999999999886542 245677653 3
Q ss_pred CCcccccccceEEEcCEEEEecCCCCc
Q 007716 260 GSKKENFQRGVELRGRITLLAEGCRGS 286 (592)
Q Consensus 260 G~~~~~f~~g~~i~a~~vI~A~G~~s~ 286 (592)
|+. .+-.+|.||+|+|.++.
T Consensus 132 g~~-------~~~~fD~VvvatG~~~~ 151 (531)
T PF00743_consen 132 GKE-------ETEEFDAVVVATGHFSK 151 (531)
T ss_dssp TEE-------EEEEECEEEEEE-SSSC
T ss_pred CeE-------EEEEeCeEEEcCCCcCC
Confidence 332 45568999999999874
No 182
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.99 E-value=1e-09 Score=119.29 Aligned_cols=51 Identities=24% Similarity=0.420 Sum_probs=44.1
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHh
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNEL 166 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l 166 (592)
+|||+|||+||+|..+|.. +. |.+|+|+|+. .+|+.|++-+|++.+.|.+.
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~------g~~V~lie~~-~~GGtC~n~GCiPsK~l~~~ 52 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FA------DKRIAIVEKG-TFGGTCLNVGCIPTKMFVYA 52 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HC------CCeEEEEeCC-CCCCeeeccCccchHHHHHH
Confidence 5999999999999998643 45 9999999985 58999999999999988543
No 183
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.98 E-value=3.4e-09 Score=113.29 Aligned_cols=147 Identities=28% Similarity=0.389 Sum_probs=85.7
Q ss_pred EEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCccc-ccC--c--cChHHHHHhhHhhhhcCCCeee---ec-
Q 007716 111 VIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII-SGN--V--FEPRALNELLPQWKQEEAPIRV---PV- 181 (592)
Q Consensus 111 vIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~-~g~--~--i~~~~l~~ll~~~~~~~~~~~~---~~- 181 (592)
+|||||+|||+||+.|++. |++|+|+||.+.+|..+. +|+ | .+.....++...+......+.. .+
T Consensus 1 vIIGgG~aGl~aAi~aa~~------G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~ 74 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAARE------GLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFS 74 (400)
T ss_pred CEEEEeHHHHHHHHHHHhc------CCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCC
Confidence 6999999999999999998 999999999998876542 221 1 1111111111111000000000 00
Q ss_pred cCCcEEEeecCCcccCCCCCCCCCcEEE----cHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCccc
Q 007716 182 SSDKFWFLTKDRAFSLPSPFSNRGNYVI----SLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIA 257 (592)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v----~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~ 257 (592)
..+.+.++.. .++.+.. .. .+.+. ....+.+.|.+.+++.|+++++++.|+++..++ + .+.|++.
T Consensus 75 ~~d~~~~~~~-~Gv~~~~--~~-~g~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~-~-~~~v~~~----- 143 (400)
T TIGR00275 75 NKDLIDFFES-LGLELKV--EE-DGRVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDD-N-GFGVETS----- 143 (400)
T ss_pred HHHHHHHHHH-cCCeeEE--ec-CCEeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecC-C-eEEEEEC-----
Confidence 0000001100 0000000 00 01111 246888999999999999999999999997654 3 3456653
Q ss_pred CCCCcccccccceEEEcCEEEEecCCCC
Q 007716 258 KDGSKKENFQRGVELRGRITLLAEGCRG 285 (592)
Q Consensus 258 ~~G~~~~~f~~g~~i~a~~vI~A~G~~s 285 (592)
+.++.+|.||+|+|.++
T Consensus 144 -----------~~~i~ad~VIlAtG~~s 160 (400)
T TIGR00275 144 -----------GGEYEADKVILATGGLS 160 (400)
T ss_pred -----------CcEEEcCEEEECCCCcc
Confidence 25789999999999876
No 184
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.97 E-value=5.3e-09 Score=115.51 Aligned_cols=114 Identities=25% Similarity=0.383 Sum_probs=82.1
Q ss_pred cccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCC
Q 007716 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSD 184 (592)
Q Consensus 105 ~~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~ 184 (592)
...|||+||||||||++||+.|++. |++|+|+|. .+|+.+... . .|..
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~------G~~v~li~~--~~GG~~~~~-----~-------~~~~------------ 257 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARK------GLRTAMVAE--RIGGQVKDT-----V-------GIEN------------ 257 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHC------CCcEEEEec--CCCCccccC-----c-------Cccc------------
Confidence 3469999999999999999999999 999999985 355532100 0 0000
Q ss_pred cEEEeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCccc
Q 007716 185 KFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKE 264 (592)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~ 264 (592)
+. ..+ .....++.+.|.+++++.|++++.+++|+++..+++. ..|.+.+
T Consensus 258 ---~~------~~~---------~~~~~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~~~--~~v~~~~----------- 306 (515)
T TIGR03140 258 ---LI------SVP---------YTTGSQLAANLEEHIKQYPIDLMENQRAKKIETEDGL--IVVTLES----------- 306 (515)
T ss_pred ---cc------ccC---------CCCHHHHHHHHHHHHHHhCCeEEcCCEEEEEEecCCe--EEEEECC-----------
Confidence 00 000 0123678888999999999999999999998776532 3455544
Q ss_pred ccccceEEEcCEEEEecCCCC
Q 007716 265 NFQRGVELRGRITLLAEGCRG 285 (592)
Q Consensus 265 ~f~~g~~i~a~~vI~A~G~~s 285 (592)
|..+.+|.+|+|+|++.
T Consensus 307 ----g~~i~~d~lIlAtGa~~ 323 (515)
T TIGR03140 307 ----GEVLKAKSVIVATGARW 323 (515)
T ss_pred ----CCEEEeCEEEECCCCCc
Confidence 46899999999999875
No 185
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.97 E-value=6.8e-09 Score=113.37 Aligned_cols=51 Identities=45% Similarity=0.621 Sum_probs=46.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHH
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALN 164 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~ 164 (592)
+|||+||||||||++||+.|++. |.+|+|+|+. .+|+.|.+-+|++.+.+.
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~------G~~V~lie~~-~~GG~c~~~gciPsk~l~ 54 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQL------GLKTAVVEKK-YWGGVCLNVGCIPSKALL 54 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhC------CCeEEEEecC-CCCCceecCCccccHHHH
Confidence 59999999999999999999999 9999999986 589999999999987663
No 186
>PRK07846 mycothione reductase; Reviewed
Probab=98.96 E-value=9.9e-10 Score=119.23 Aligned_cols=51 Identities=24% Similarity=0.410 Sum_probs=44.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHh
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNEL 166 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l 166 (592)
+|||+||||||+|.+||+. +. |.+|+|+|+. .+||.|++-+|++.+.|.+.
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~------G~~V~lie~~-~~GGtC~n~GCiPsK~l~~~ 51 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FA------DKRIAIVEKG-TFGGTCLNVGCIPTKMFVYA 51 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HC------CCeEEEEeCC-CCCCcccCcCcchhHHHHHH
Confidence 4899999999999998865 35 9999999985 58999999999999987544
No 187
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.96 E-value=1.8e-09 Score=117.55 Aligned_cols=52 Identities=27% Similarity=0.487 Sum_probs=47.3
Q ss_pred cEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhh
Q 007716 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELL 167 (592)
Q Consensus 109 DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll 167 (592)
+|+||||||||++||+.|++. |.+|+|+||.. .|+.|++.+|++.+.+.+..
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~------g~~V~lie~~~-~GG~c~n~gciPsk~l~~~a 53 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQN------GKNVTLIDEAD-LGGTCLNEGCMPTKSLLESA 53 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhC------CCcEEEEECCc-ccccCCCCccccchHHHHHH
Confidence 699999999999999999998 99999999874 79999999999999885543
No 188
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.94 E-value=1e-08 Score=113.04 Aligned_cols=64 Identities=27% Similarity=0.352 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHc-CCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCCCcc
Q 007716 211 LSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (592)
Q Consensus 211 ~~~l~~~L~~~a~~~-Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~v 287 (592)
...+...|.+.+++. ||+|+.++.++++..++ ++|+||.+.+ ++. ...+.||.||+|+|+.+.+
T Consensus 135 G~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~~-g~v~Gv~~~~-----~~~-------~~~i~Ak~VVLATGG~~~~ 199 (513)
T PRK07512 135 GAAIMRALIAAVRATPSITVLEGAEARRLLVDD-GAVAGVLAAT-----AGG-------PVVLPARAVVLATGGIGGL 199 (513)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECcChhheeecC-CEEEEEEEEe-----CCe-------EEEEECCEEEEcCCCCcCC
Confidence 357888898888875 89999999999988764 7888887653 111 1468999999999998753
No 189
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.94 E-value=2.9e-09 Score=116.22 Aligned_cols=144 Identities=21% Similarity=0.361 Sum_probs=86.1
Q ss_pred cEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHh---hHhhhhcCCCeeeeccCCc
Q 007716 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNEL---LPQWKQEEAPIRVPVSSDK 185 (592)
Q Consensus 109 DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~l---l~~~~~~~~~~~~~~~~~~ 185 (592)
||+||||||+|+.+|+.|+++ |.+|+|+||.. +|+.|++.+|++.+.+.+. ...+.... .. .
T Consensus 3 ~vvviG~G~~G~~~a~~~~~~------g~~v~~~e~~~-~gG~c~~~gciPsK~l~~~a~~~~~~~~~~-~~-------g 67 (466)
T PRK07845 3 RIVIIGGGPGGYEAALVAAQL------GADVTVIERDG-LGGAAVLTDCVPSKTLIATAEVRTELRRAA-EL-------G 67 (466)
T ss_pred cEEEECCCHHHHHHHHHHHhC------CCeEEEEEccC-CCCcccccCCcchHHHHHHHHHHHHHHHHH-hC-------C
Confidence 799999999999999999999 99999999875 8999999999999887433 22221100 00 0
Q ss_pred EEEe-ecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEE--EcCCCcEEEEEeccCcccCCCCc
Q 007716 186 FWFL-TKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEIL--YDADNKVIGIGTNDMGIAKDGSK 262 (592)
Q Consensus 186 ~~~~-~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~--~~~~g~v~~V~~~d~g~~~~G~~ 262 (592)
+... .....++++..+..... + ...+.+.+.+++++.||+++.+... .+. .++ .. +.|.+.+ |+.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~l~~~gV~~~~g~~~-~~~~~~~~-~~-v~V~~~~------g~~ 135 (466)
T PRK07845 68 IRFIDDGEARVDLPAVNARVKA-L--AAAQSADIRARLEREGVRVIAGRGR-LIDPGLGP-HR-VKVTTAD------GGE 135 (466)
T ss_pred cccccCcccccCHHHHHHHHHH-H--HHHHHHHHHHHHHHCCCEEEEEEEE-EeecccCC-CE-EEEEeCC------Cce
Confidence 0000 00001111100000000 0 0223345667777789999988643 222 222 32 3455433 211
Q ss_pred ccccccceEEEcCEEEEecCCCCc
Q 007716 263 KENFQRGVELRGRITLLAEGCRGS 286 (592)
Q Consensus 263 ~~~f~~g~~i~a~~vI~A~G~~s~ 286 (592)
.++.+|.||+|+|+++.
T Consensus 136 -------~~~~~d~lViATGs~p~ 152 (466)
T PRK07845 136 -------ETLDADVVLIATGASPR 152 (466)
T ss_pred -------EEEecCEEEEcCCCCCC
Confidence 37999999999999874
No 190
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=98.94 E-value=1.8e-08 Score=97.89 Aligned_cols=165 Identities=18% Similarity=0.217 Sum_probs=91.6
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcc-cccCccC----h---HHH--------HHhhHh
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI-ISGNVFE----P---RAL--------NELLPQ 169 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~-~~g~~i~----~---~~l--------~~ll~~ 169 (592)
....|+|||||+.|.++|+.|++.-.-+-..+.|+|+|+....|+.. ..++.+. + ..| ++|-++
T Consensus 9 nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSGkasgfLa~wc~~s~~~~La~lsfkLh~~Lsde 88 (380)
T KOG2852|consen 9 NSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASGKASGFLAKWCQPSIIQPLATLSFKLHEELSDE 88 (380)
T ss_pred CceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccccccccchhhHhhhCCcccchhhHHHHHHHHHHHHh
Confidence 34679999999999999999999811111128999999887555432 1222221 1 111 111111
Q ss_pred hhhcCCCeeeeccCCcEEEeecC----------CcccCC---------CCCCCCCcEEEcHHHHHHHHHHHHHHcC-CEE
Q 007716 170 WKQEEAPIRVPVSSDKFWFLTKD----------RAFSLP---------SPFSNRGNYVISLSQLVRWLGGKAEELG-VEI 229 (592)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~---------~~~~~~~~~~v~~~~l~~~L~~~a~~~G-v~i 229 (592)
+...+.--.... .-|....+ .++++- ..........++...|++.+++.|++.| |++
T Consensus 89 ydGvnnwgYRal---tTws~ka~~en~~p~k~pegldWi~~e~v~~~ssiG~t~ttaqvhP~lFc~~i~sea~k~~~V~l 165 (380)
T KOG2852|consen 89 YDGVNNWGYRAL---TTWSCKADWENTNPAKVPEGLDWIQRERVQKCSSIGSTNTTAQVHPYLFCHFILSEAEKRGGVKL 165 (380)
T ss_pred hcCcccccceee---eEEEEEeecccCCcccCCcchhhhhhHHhhhheeccCCCccceeCHHHHHHHHHHHHHhhcCeEE
Confidence 111000000000 00111000 011110 0111122457899999999999999876 999
Q ss_pred ecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCCCc
Q 007716 230 YPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 286 (592)
Q Consensus 230 ~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~ 286 (592)
.+|. |.++. ++.+++.+|-..+ ..+ ......++.+|+|.|.|+.
T Consensus 166 v~Gk-v~ev~-dEk~r~n~v~~ae----~~~-------ti~~~d~~~ivvsaGPWTs 209 (380)
T KOG2852|consen 166 VFGK-VKEVS-DEKHRINSVPKAE----AED-------TIIKADVHKIVVSAGPWTS 209 (380)
T ss_pred EEee-eEEee-cccccccccchhh----hcC-------ceEEeeeeEEEEecCCCch
Confidence 9995 77775 3346665554331 111 1466788999999999975
No 191
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.93 E-value=1.8e-08 Score=109.02 Aligned_cols=72 Identities=31% Similarity=0.227 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHcCCEEecCceEEEEEEcC-CCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCCCcchH
Q 007716 211 LSQLVRWLGGKAEELGVEIYPGFAASEILYDA-DNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSE 289 (592)
Q Consensus 211 ~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~-~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~vr~ 289 (592)
...+.+.|.+.+++.|++|+++++|++++.++ ++.+++|...+ ++.+++||.||+|+|..+..+.
T Consensus 122 g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~--------------~~~~i~ak~VIlAtGG~~~n~~ 187 (432)
T TIGR02485 122 GKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTV--------------GTHRITTQALVLAAGGLGANRD 187 (432)
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcC--------------CcEEEEcCEEEEcCCCcccCHH
Confidence 35688999999999999999999999998763 47787877532 1358899999999999988655
Q ss_pred HHHHHcC
Q 007716 290 KLIKNFK 296 (592)
Q Consensus 290 ~l~~~~~ 296 (592)
.+.+.++
T Consensus 188 ~~~~~~~ 194 (432)
T TIGR02485 188 WLRKTHG 194 (432)
T ss_pred HHHhhcC
Confidence 4433333
No 192
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=98.92 E-value=1e-07 Score=94.73 Aligned_cols=41 Identities=39% Similarity=0.567 Sum_probs=34.8
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCC
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEV 148 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~ 148 (592)
...||+|||||..|++.|++|++++ +..|++|+|+||....
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~--rd~gl~VvVVErddty 125 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERA--RDEGLNVVVVERDDTY 125 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHh--hcCCceEEEEeccCcc
Confidence 4689999999999999999999863 3347999999998753
No 193
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.91 E-value=2e-09 Score=117.46 Aligned_cols=53 Identities=36% Similarity=0.593 Sum_probs=47.9
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHH
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNE 165 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ 165 (592)
++||||||||||+|++||+.|++. |.+|+|||+ ..+|+.+.+-+|++.+.+..
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~------g~~v~lie~-~~~GG~~~~~gc~psk~l~~ 54 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKL------GKKVALIEK-GPLGGTCLNVGCIPSKALIA 54 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHC------CCeEEEEeC-CccccceeccceeeHHHHHH
Confidence 359999999999999999999999 999999999 56899999899999887644
No 194
>PLN02612 phytoene desaturase
Probab=98.90 E-value=3.3e-07 Score=102.26 Aligned_cols=57 Identities=18% Similarity=0.155 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCC
Q 007716 212 SQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGC 283 (592)
Q Consensus 212 ~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~ 283 (592)
..+.+.|.+.+++.|++|+++++|++|..++++.+++|++.+ |.+++||.||.|+..
T Consensus 308 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~---------------G~~~~ad~VI~a~p~ 364 (567)
T PLN02612 308 ERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTN---------------GSVVEGDVYVSATPV 364 (567)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECC---------------CcEEECCEEEECCCH
Confidence 457788888888899999999999999987777777788765 578999999999864
No 195
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.88 E-value=1.9e-08 Score=117.96 Aligned_cols=166 Identities=16% Similarity=0.242 Sum_probs=88.6
Q ss_pred ccccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCccccc--Ccc-----C-hHHHHHhhHhhhhcCC
Q 007716 104 ESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISG--NVF-----E-PRALNELLPQWKQEEA 175 (592)
Q Consensus 104 ~~~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g--~~i-----~-~~~l~~ll~~~~~~~~ 175 (592)
+.+++||||||||.|||+||+.+++. |++|+|+||.....+....+ +.+ . ....+..+.+....+.
T Consensus 10 ~~~~~DVlVVG~G~AGl~AAl~Aa~~------G~~V~lleK~~~~~sg~~~~g~~gi~~~~~~~~ds~e~~~~Dt~~~g~ 83 (897)
T PRK13800 10 LRLDCDVLVIGGGTAGTMAALTAAEH------GANVLLLEKAHVRHSGALAMGMDGVNNAVIPGKAEPEDYVAEITRAND 83 (897)
T ss_pred ceeecCEEEECcCHHHHHHHHHHHHC------CCeEEEEecccccCCCcccCCchhhhcccCCCccCHHHHHHHHHhhcC
Confidence 44679999999999999999999998 99999999987421111111 011 1 0111111111111000
Q ss_pred Cee----------------eeccCCcEEEee-cCCcccCCCCCCCCCcEE---EcHHHHHHHHHHHHHHc----CCEEec
Q 007716 176 PIR----------------VPVSSDKFWFLT-KDRAFSLPSPFSNRGNYV---ISLSQLVRWLGGKAEEL----GVEIYP 231 (592)
Q Consensus 176 ~~~----------------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---v~~~~l~~~L~~~a~~~----Gv~i~~ 231 (592)
.+. ......++.|.. ..+.+.... ....+.+. -....+...|.+.+.+. +|+++.
T Consensus 84 gl~d~~~v~~~~~~a~~~i~~L~~~Gv~f~~~~~G~~~~~~-~~~~~~~~~~~~tG~~i~~~L~~~l~~~~~~~~i~~~~ 162 (897)
T PRK13800 84 GIVNQRTVYQTATRGFAMVQRLERYGVKFEKDEHGEYAVRR-VHRSGSYVLPMPEGKDVKKALYRVLRQRSMRERIRIEN 162 (897)
T ss_pred CCCCHHHHHHHHHhHHHHHHHHHHcCCceeeCCCCCEeeee-eccCCCccccCCCchhHHHHHHHHHHHhhhcCCcEEEe
Confidence 000 000000111100 001110000 00000111 02244555666665443 688988
Q ss_pred CceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCCCcc
Q 007716 232 GFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (592)
Q Consensus 232 g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~v 287 (592)
++.+.+++.++ |++.||...+ ..+|+. ..+.||.||+|||+.+.+
T Consensus 163 ~~~~~~Li~~~-g~v~Gv~~~~---~~~g~~-------~~i~AkaVILATGG~g~~ 207 (897)
T PRK13800 163 RLMPVRVLTEG-GRAVGAAALN---TRTGEF-------VTVGAKAVILATGPCGRL 207 (897)
T ss_pred ceeeEEEEeeC-CEEEEEEEEe---cCCCcE-------EEEECCEEEECCCccccC
Confidence 88888888764 7888987643 123442 578999999999998864
No 196
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.87 E-value=5.1e-09 Score=102.99 Aligned_cols=187 Identities=26% Similarity=0.329 Sum_probs=108.6
Q ss_pred cEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCccc------ccCccCh----------H-----------
Q 007716 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII------SGNVFEP----------R----------- 161 (592)
Q Consensus 109 DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~------~g~~i~~----------~----------- 161 (592)
.|||||+|.|||+|+..+-.. +-.|+++||...+|+... +|++-+. +
T Consensus 11 pvvVIGgGLAGLsasn~iin~------gg~V~llek~~s~GGNSiKAsSGINgA~TetQ~~~~i~Dsp~lf~~Dtl~sak 84 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINK------GGIVILLEKAGSIGGNSIKASSGINGAGTETQEKLHIKDSPELFVKDTLSSAK 84 (477)
T ss_pred cEEEECCchhhhhhHHHHHhc------CCeEEEEeccCCcCCcceecccCcCCCchhhhhhcccccChHHHhhhhhhhcc
Confidence 499999999999999999887 666999999999888652 2332211 0
Q ss_pred --HHHHhhHhhhhcCCCeeeeccCCcEEEeecCCcc-----------cCCCCCCCCCcEEEcHHHHHHHHHHH----HHH
Q 007716 162 --ALNELLPQWKQEEAPIRVPVSSDKFWFLTKDRAF-----------SLPSPFSNRGNYVISLSQLVRWLGGK----AEE 224 (592)
Q Consensus 162 --~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~v~~~~l~~~L~~~----a~~ 224 (592)
...+|+..+... ....+.|+.....+ ..|...+..+ -.-..-.+...|..+ +.+
T Consensus 85 sk~~~eLm~~La~~--------S~~AvewL~~ef~lkld~la~lgGHSvpRTHr~s~-plppgfei~~~L~~~l~k~as~ 155 (477)
T KOG2404|consen 85 SKGVPELMEKLAAN--------SASAVEWLRGEFDLKLDLLAQLGGHSVPRTHRSSG-PLPPGFEIVKALSTRLKKKASE 155 (477)
T ss_pred cCCcHHHHHHHHhc--------CHHHHHHHhhhcccchHHHHHhcCCCCCcccccCC-CCCCchHHHHHHHHHHHHhhhc
Confidence 011111111110 00111111111111 1111110000 000112444444444 433
Q ss_pred cC--CEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCCcc--
Q 007716 225 LG--VEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLREK-- 300 (592)
Q Consensus 225 ~G--v~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~vr~~l~~~~~l~~~-- 300 (592)
.. ++|..+++|++|..+ +|.|.+|...| .+|+. ..+.++.||+|+|+.+.--+.|.+.|+.+.-
T Consensus 156 ~pe~~ki~~nskvv~il~n-~gkVsgVeymd----~sgek-------~~~~~~~VVlatGGf~ysd~~lLKey~pel~~l 223 (477)
T KOG2404|consen 156 NPELVKILLNSKVVDILRN-NGKVSGVEYMD----ASGEK-------SKIIGDAVVLATGGFGYSDKELLKEYGPELFGL 223 (477)
T ss_pred ChHHHhhhhcceeeeeecC-CCeEEEEEEEc----CCCCc-------cceecCceEEecCCcCcChHHHHHHhChhhccC
Confidence 32 789999999999955 48899999876 66764 5788999999999999766888877776531
Q ss_pred -cccCcccceeeEEEEEeecCCC
Q 007716 301 -SHAQHQTYALGIKEVWEIDEGK 322 (592)
Q Consensus 301 -~~~~~~~~~~g~~~~~~i~~~~ 322 (592)
....++..|.|-+.+..+....
T Consensus 224 pTTNG~~~tGDgqk~l~klga~l 246 (477)
T KOG2404|consen 224 PTTNGAQTTGDGQKMLMKLGASL 246 (477)
T ss_pred CcCCCCcccCcHHHHHHHhCccc
Confidence 2233445555555554444433
No 197
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=98.84 E-value=8.8e-07 Score=96.72 Aligned_cols=42 Identities=36% Similarity=0.488 Sum_probs=37.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcCC--CCcEEEEcCCCCCCCccc
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKNV--DLSVCVVEKGAEVGAHII 153 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~~--g~~V~vlEk~~~~g~~~~ 153 (592)
.||+|||||++||+||+.|++. .+ |.+|+|+|+++.+||.+.
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~----~~~~g~~v~vlE~~~r~GG~~~ 46 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKE----IPELPVELTLVEASDRVGGKIQ 46 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhc----CCCCCCcEEEEEcCCcCcceEE
Confidence 6899999999999999999986 23 799999999999998763
No 198
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.84 E-value=5.5e-07 Score=96.16 Aligned_cols=60 Identities=27% Similarity=0.297 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCCC
Q 007716 212 SQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRG 285 (592)
Q Consensus 212 ~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s 285 (592)
.++.+.|.+.+++.|++|+.+++|+++..++ +.+..|.+.+ |+ ..+++||.||+|+|...
T Consensus 259 ~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~-~~V~~v~~~~------g~-------~~~i~AD~VVLAtGrf~ 318 (422)
T PRK05329 259 LRLQNALRRAFERLGGRIMPGDEVLGAEFEG-GRVTAVWTRN------HG-------DIPLRARHFVLATGSFF 318 (422)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeC-CEEEEEEeeC------Cc-------eEEEECCEEEEeCCCcc
Confidence 4577888888888999999999999998775 5555554332 22 25799999999999753
No 199
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.84 E-value=7.3e-07 Score=97.13 Aligned_cols=63 Identities=17% Similarity=0.146 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCC
Q 007716 212 SQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCR 284 (592)
Q Consensus 212 ~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~ 284 (592)
..+.+.|.+.+++.|++|++++.|++|..++++.+++|.+.+ .+|+. ..++.||.||.|...+
T Consensus 213 ~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~----~~~~~------~~~~~a~~VI~a~p~~ 275 (453)
T TIGR02731 213 ERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLAD----GEGQR------RFEVTADAYVSAMPVD 275 (453)
T ss_pred HHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEec----CCCCc------eeEEECCEEEEcCCHH
Confidence 356777888888889999999999999877667787888754 11110 0278999999999764
No 200
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.83 E-value=2.1e-08 Score=109.76 Aligned_cols=58 Identities=29% Similarity=0.377 Sum_probs=48.4
Q ss_pred cHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCC
Q 007716 210 SLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGC 283 (592)
Q Consensus 210 ~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~ 283 (592)
.-+.|.+.|.+.+++.|++|+++++|++|..++ |+.+++++.+ |..+++|.||.+...
T Consensus 222 G~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~-g~g~~~~~~~---------------g~~~~ad~vv~~~~~ 279 (487)
T COG1233 222 GMGALVDALAELAREHGGEIRTGAEVSQILVEG-GKGVGVRTSD---------------GENIEADAVVSNADP 279 (487)
T ss_pred CHHHHHHHHHHHHHHcCCEEECCCceEEEEEeC-CcceEEeccc---------------cceeccceeEecCch
Confidence 347999999999999999999999999999887 5555666654 457899999988776
No 201
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.81 E-value=5.4e-06 Score=90.13 Aligned_cols=39 Identities=36% Similarity=0.593 Sum_probs=36.1
Q ss_pred cEEEECCCHHHHHHHHHHHHhhhhcCCC--CcEEEEcCCCCCCCccc
Q 007716 109 DVVIVGAGPAGLSAAIRLKQLCREKNVD--LSVCVVEKGAEVGAHII 153 (592)
Q Consensus 109 DVvIVGaG~aGl~aA~~La~~~~~~~~g--~~V~vlEk~~~~g~~~~ 153 (592)
+|+|||||+|||+||+.|++. | ++|+|+|+++.+||.+.
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~------G~~~~V~vlEa~~~~GGr~~ 42 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKK------GPDADITLLEASDRLGGKIQ 42 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHh------CCCCCEEEEEcCCCCcceEE
Confidence 599999999999999999997 6 89999999999998764
No 202
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=98.81 E-value=1e-08 Score=98.56 Aligned_cols=117 Identities=30% Similarity=0.408 Sum_probs=73.4
Q ss_pred cEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcEEE
Q 007716 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFWF 188 (592)
Q Consensus 109 DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~ 188 (592)
||||||||+||+++|..|++. +.+|+|+|+.+... ....++....+.+..+.....
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~------~~~v~ii~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--------------- 56 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARP------GAKVLIIEKSPGTP---YNSGCIPSPLLVEIAPHRHEF--------------- 56 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHT------TSEEEEESSSSHHH---HHHSHHHHHHHHHHHHHHHHH---------------
T ss_pred CEEEEecHHHHHHHHHHHhcC------CCeEEEEecccccc---ccccccccccccccccccccc---------------
Confidence 799999999999999999988 99999998876322 122222222221111110000
Q ss_pred eecCCcccCCCCCCCCCcEEEcHHHHHH--HHHHHHHHcCCEEecCceEEEEEEcCCCcE----EEEEeccCcccCCCCc
Q 007716 189 LTKDRAFSLPSPFSNRGNYVISLSQLVR--WLGGKAEELGVEIYPGFAASEILYDADNKV----IGIGTNDMGIAKDGSK 262 (592)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~~~~l~~--~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v----~~V~~~d~g~~~~G~~ 262 (592)
.. .+ .+.+++...+++++.+..+.++.... +.+ ..+... ..+
T Consensus 57 -----------------------~~-~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~-~~~~~~~~~~~~~-----~~~-- 104 (201)
T PF07992_consen 57 -----------------------LP-ARLFKLVDQLKNRGVEIRLNAKVVSIDPES-KRVVCPAVTIQVV-----ETG-- 104 (201)
T ss_dssp -----------------------HH-HHHGHHHHHHHHHTHEEEHHHTEEEEEEST-TEEEETCEEEEEE-----ETT--
T ss_pred -----------------------cc-ccccccccccccceEEEeeccccccccccc-cccccCcccceee-----ccC--
Confidence 00 01 45555666889998889999997766 321 112110 011
Q ss_pred ccccccceEEEcCEEEEecCCCCc
Q 007716 263 KENFQRGVELRGRITLLAEGCRGS 286 (592)
Q Consensus 263 ~~~f~~g~~i~a~~vI~A~G~~s~ 286 (592)
++.++.+|+||+|+|..+.
T Consensus 105 -----~~~~~~~d~lviAtG~~~~ 123 (201)
T PF07992_consen 105 -----DGREIKYDYLVIATGSRPR 123 (201)
T ss_dssp -----TEEEEEEEEEEEESTEEEE
T ss_pred -----CceEecCCeeeecCccccc
Confidence 2588999999999997654
No 203
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.81 E-value=3.5e-08 Score=95.41 Aligned_cols=142 Identities=26% Similarity=0.366 Sum_probs=87.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcc----cccCccC-------h--HHHHHhhHhhhhcC
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI----ISGNVFE-------P--RALNELLPQWKQEE 174 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~----~~g~~i~-------~--~~l~~ll~~~~~~~ 174 (592)
.+|+|||+|++||+||..|++. |.+|+|+||+.-+|++. +.++.++ + ..+.+.+..|.+.+
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~a------G~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~g 75 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREA------GREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDG 75 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhc------CcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCC
Confidence 3699999999999999999999 99999999999888754 2233333 2 23345555666543
Q ss_pred CCeeeeccCCcEEEeecCCcccCCCCCCCCCcEE--EcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEec
Q 007716 175 APIRVPVSSDKFWFLTKDRAFSLPSPFSNRGNYV--ISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTN 252 (592)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~ 252 (592)
.. .+....+|-+.....- +.... . .|+ -..+.|.+.|. ...+|.++++|+++-..++ .+.+.+.
T Consensus 76 lV---~~W~~~~~~~~~~~~~--~~~d~-~-pyvg~pgmsalak~LA-----tdL~V~~~~rVt~v~~~~~--~W~l~~~ 141 (331)
T COG3380 76 LV---DVWTPAVWTFTGDGSP--PRGDE-D-PYVGEPGMSALAKFLA-----TDLTVVLETRVTEVARTDN--DWTLHTD 141 (331)
T ss_pred ce---eeccccccccccCCCC--CCCCC-C-ccccCcchHHHHHHHh-----ccchhhhhhhhhhheecCC--eeEEEec
Confidence 21 2222333333322100 00000 0 122 12345555554 3468999999999987743 4678875
Q ss_pred cCcccCCCCcccccccceEEEcCEEEEecCC
Q 007716 253 DMGIAKDGSKKENFQRGVELRGRITLLAEGC 283 (592)
Q Consensus 253 d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~ 283 (592)
+ | +....+|.||+|-=+
T Consensus 142 ~------g--------~~~~~~d~vvla~PA 158 (331)
T COG3380 142 D------G--------TRHTQFDDVVLAIPA 158 (331)
T ss_pred C------C--------CcccccceEEEecCC
Confidence 5 2 256778999988654
No 204
>PLN02576 protoporphyrinogen oxidase
Probab=98.80 E-value=2.6e-06 Score=94.00 Aligned_cols=42 Identities=40% Similarity=0.548 Sum_probs=37.4
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCccc
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII 153 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~ 153 (592)
++||+|||||++||+||+.|++. .|++|+|+|+.+.+||.+.
T Consensus 12 ~~~v~IIGaGisGL~aA~~L~~~-----~g~~v~vlEa~~rvGGr~~ 53 (496)
T PLN02576 12 SKDVAVVGAGVSGLAAAYALASK-----HGVNVLVTEARDRVGGNIT 53 (496)
T ss_pred CCCEEEECcCHHHHHHHHHHHHh-----cCCCEEEEecCCCCCCcee
Confidence 57899999999999999999985 1699999999999998754
No 205
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=98.80 E-value=7.8e-07 Score=97.18 Aligned_cols=45 Identities=38% Similarity=0.629 Sum_probs=36.3
Q ss_pred cEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCccc
Q 007716 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII 153 (592)
Q Consensus 109 DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~ 153 (592)
+|+|||||++||+||+.|++.-..++.|.+|+|+|+++.+||.+.
T Consensus 3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~ 47 (463)
T PRK12416 3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIH 47 (463)
T ss_pred eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEE
Confidence 599999999999999999985100012489999999999999764
No 206
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.80 E-value=8.7e-08 Score=104.28 Aligned_cols=65 Identities=18% Similarity=0.229 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHcCCEEecCceEEEEEEc-CC--CcEEEEEeccCcccCCCCcccccccc-eEEEcCEEEEecCCCCc
Q 007716 212 SQLVRWLGGKAEELGVEIYPGFAASEILYD-AD--NKVIGIGTNDMGIAKDGSKKENFQRG-VELRGRITLLAEGCRGS 286 (592)
Q Consensus 212 ~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~-~~--g~v~~V~~~d~g~~~~G~~~~~f~~g-~~i~a~~vI~A~G~~s~ 286 (592)
..|..-|.+.+++.||+++++++|++|..+ ++ ++|++|.+.. +|+. .. ....+|.||+|+|+...
T Consensus 226 eSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~-----~~~~-----~~I~l~~~DlVivTnGs~t~ 294 (576)
T PRK13977 226 ESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTR-----NGKE-----ETIDLTEDDLVFVTNGSITE 294 (576)
T ss_pred hHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEe-----CCce-----eEEEecCCCEEEEeCCcCcc
Confidence 567788889999999999999999999986 32 5688888753 2221 01 23468999999998654
No 207
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.79 E-value=1.4e-07 Score=98.71 Aligned_cols=79 Identities=19% Similarity=0.299 Sum_probs=62.8
Q ss_pred EEEcHHHHHHHHHHHHHHc-CCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCCC
Q 007716 207 YVISLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRG 285 (592)
Q Consensus 207 ~~v~~~~l~~~L~~~a~~~-Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s 285 (592)
.-|+-+.|.+.|.+.+++. |++++++++|++|...+||. |.|.+.| .++|+ ..+++||+|++..|+.+
T Consensus 176 TDVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~-W~v~~~~---~~~~~-------~~~v~a~FVfvGAGG~a 244 (488)
T PF06039_consen 176 TDVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGR-WEVKVKD---LKTGE-------KREVRAKFVFVGAGGGA 244 (488)
T ss_pred ccccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCC-EEEEEEe---cCCCC-------eEEEECCEEEECCchHh
Confidence 3478899999999999887 89999999999999998774 3566654 23443 37899999999999997
Q ss_pred cchHHHHHHcCCCc
Q 007716 286 SLSEKLIKNFKLRE 299 (592)
Q Consensus 286 ~vr~~l~~~~~l~~ 299 (592)
. .|.++.|+++
T Consensus 245 L---~LLqksgi~e 255 (488)
T PF06039_consen 245 L---PLLQKSGIPE 255 (488)
T ss_pred H---HHHHHcCChh
Confidence 5 5666777763
No 208
>PRK10262 thioredoxin reductase; Provisional
Probab=98.79 E-value=4.8e-08 Score=101.38 Aligned_cols=114 Identities=17% Similarity=0.251 Sum_probs=76.5
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCc
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDK 185 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~ 185 (592)
..+||+|||||||||+||+.|+++ |++|+++|+. ..|+.+.... ..
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~------g~~~~~ie~~-~~gg~~~~~~--------------~~------------- 50 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARA------NLQPVLITGM-EKGGQLTTTT--------------EV------------- 50 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHC------CCCeEEEEee-cCCCceecCc--------------eE-------------
Confidence 468999999999999999999999 9999999965 4555321000 00
Q ss_pred EEEeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccc
Q 007716 186 FWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKEN 265 (592)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~ 265 (592)
..+|.. ...++...+.+.+.+.+...++++..+ .|+.+...+ +. +.+...+
T Consensus 51 ---------~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~v~~~~-~~-~~v~~~~------------ 101 (321)
T PRK10262 51 ---------ENWPGD-----PNDLTGPLLMERMHEHATKFETEIIFD-HINKVDLQN-RP-FRLTGDS------------ 101 (321)
T ss_pred ---------CCCCCC-----CCCCCHHHHHHHHHHHHHHCCCEEEee-EEEEEEecC-Ce-EEEEecC------------
Confidence 001100 001233567788888888888888776 466776654 32 2344322
Q ss_pred cccceEEEcCEEEEecCCCCc
Q 007716 266 FQRGVELRGRITLLAEGCRGS 286 (592)
Q Consensus 266 f~~g~~i~a~~vI~A~G~~s~ 286 (592)
.++.+|.||+|+|.+..
T Consensus 102 ----~~~~~d~vilAtG~~~~ 118 (321)
T PRK10262 102 ----GEYTCDALIIATGASAR 118 (321)
T ss_pred ----CEEEECEEEECCCCCCC
Confidence 36899999999999864
No 209
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.79 E-value=5e-08 Score=107.42 Aligned_cols=167 Identities=23% Similarity=0.313 Sum_probs=96.5
Q ss_pred cccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCccccc-CccC-----h-----HHHHHhhHh-hhh
Q 007716 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISG-NVFE-----P-----RALNELLPQ-WKQ 172 (592)
Q Consensus 105 ~~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g-~~i~-----~-----~~l~~ll~~-~~~ 172 (592)
..++||||||||.|||.||+.+++. |++|+|+||....++++..+ +.+. . ...+..+.+ +..
T Consensus 4 ~~~~DvvVIG~G~AGl~AAi~aa~~------g~~V~l~~K~~~~rg~t~~a~gG~~a~~~~~~~~~~ds~e~~~~dtvkg 77 (562)
T COG1053 4 IHEFDVVVIGGGGAGLRAAIEAAEA------GLKVALLSKAPPKRGHTVAAQGGINAALGNTVDVEGDSPELHFYDTVKG 77 (562)
T ss_pred cccCCEEEECCcHHHHHHHHHHHhc------CCcEEEEEccccCCCchhhhcccccccccCcccccCCCHHHHHHHHHhc
Confidence 3579999999999999999999999 99999999998777665321 1111 0 011111000 000
Q ss_pred cC--------------CCee-eeccCCcEEEee-cCCccc---CCCCCCCCCcEEEc--HHHHHHHHHHHHHH-cCCEEe
Q 007716 173 EE--------------APIR-VPVSSDKFWFLT-KDRAFS---LPSPFSNRGNYVIS--LSQLVRWLGGKAEE-LGVEIY 230 (592)
Q Consensus 173 ~~--------------~~~~-~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~v~--~~~l~~~L~~~a~~-~Gv~i~ 230 (592)
.+ .|.. ........-+.. ....+. +......+..|.-+ ...+...|.+++.+ .+++|+
T Consensus 78 ~d~l~dqd~i~~~~~~ap~~v~~Le~~G~~f~r~~~G~~~~r~fgg~~~~rt~~~~~~tG~~ll~~L~~~~~~~~~~~~~ 157 (562)
T COG1053 78 GDGLGDQDAVEAFADEAPEAVDELEKWGVPFSRTEDGRIYQRRFGGHSKPRTCFAADKTGHELLHTLYEQLLKFSGIEIF 157 (562)
T ss_pred cCCcCCHHHHHHHHHhhHHHHHHHHHhCCCcccCCCccccccccCCcCCCcceecCCCCcHHHHHHHHHHHHHhhcchhh
Confidence 00 0000 000000000000 000000 00000001122222 25688899999988 567899
Q ss_pred cCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCCCcc
Q 007716 231 PGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (592)
Q Consensus 231 ~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~v 287 (592)
.+..+.++..++++.+.||..-+ .++|+. ..++||.||+|||+.+.+
T Consensus 158 ~~~~~~~l~~~~~~~v~Gvv~~~---~~~g~~-------~~~~akavilaTGG~g~~ 204 (562)
T COG1053 158 DEYFVLDLLVDDGGGVAGVVARD---LRTGEL-------YVFRAKAVILATGGAGRL 204 (562)
T ss_pred hhhhhhhheecCCCcEEEEEEEE---ecCCcE-------EEEecCcEEEccCCceEE
Confidence 99999999988766677877655 234443 678899999999999843
No 210
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=98.77 E-value=4.9e-09 Score=109.16 Aligned_cols=151 Identities=28% Similarity=0.406 Sum_probs=82.4
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcc---cccCccChHHHHHhhHhhhhcCCCeeeeccC
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI---ISGNVFEPRALNELLPQWKQEEAPIRVPVSS 183 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~---~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~ 183 (592)
.+|+|+||.||++|++|+.|.... +++++++||.+....|. +.|..++...|..|. . + ....
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~-----~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlv----t----~--~~P~ 66 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHG-----DLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLV----T----L--RDPT 66 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH--------EEEEES-SS--TTGGG--SS-B-SS-TTSSSS----T----T--T-TT
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcC-----CCCEEEEecCCCCCcCCccCCCCCccccccccccC----c----C--cCCC
Confidence 489999999999999999999981 59999999998776553 222222222111110 0 0 0000
Q ss_pred CcEEE---eecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCC--cEEEEEeccCcccC
Q 007716 184 DKFWF---LTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADN--KVIGIGTNDMGIAK 258 (592)
Q Consensus 184 ~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g--~v~~V~~~d~g~~~ 258 (592)
..+.| +...+.+ ..+-+.+.+..+|.++.++|...|++.+-.+.++.+|++|..++++ ..+.|.+.+ .
T Consensus 67 s~~sflnYL~~~~rl---~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~----~ 139 (341)
T PF13434_consen 67 SPFSFLNYLHEHGRL---YEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRD----S 139 (341)
T ss_dssp STTSHHHHHHHTT-H---HHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEE----T
T ss_pred CcccHHHHHHHcCCh---hhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEee----c
Confidence 11111 1111111 0011112334678999999999888888669999999999887654 356777753 3
Q ss_pred CCCcccccccceEEEcCEEEEecCCCCc
Q 007716 259 DGSKKENFQRGVELRGRITLLAEGCRGS 286 (592)
Q Consensus 259 ~G~~~~~f~~g~~i~a~~vI~A~G~~s~ 286 (592)
+|+ +.++.|+.||+|+|..+.
T Consensus 140 ~g~-------~~~~~ar~vVla~G~~P~ 160 (341)
T PF13434_consen 140 DGD-------GETYRARNVVLATGGQPR 160 (341)
T ss_dssp TS--------EEEEEESEEEE----EE-
T ss_pred CCC-------eeEEEeCeEEECcCCCCC
Confidence 343 479999999999995543
No 211
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=98.76 E-value=3.2e-08 Score=91.95 Aligned_cols=154 Identities=22% Similarity=0.352 Sum_probs=90.9
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcE
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~ 186 (592)
+.||||||+|.+||+||+..++. .|+++|+|||..-.+|+..+-|+.+-...+.+--..
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~----rPdlkvaIIE~SVaPGGGaWLGGQLFSAMvvRKPAh----------------- 134 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKN----RPDLKVAIIESSVAPGGGAWLGGQLFSAMVVRKPAH----------------- 134 (328)
T ss_pred ccceEEECCCccccceeeeeecc----CCCceEEEEEeeecCCCcccccchhhhhhhhcChHH-----------------
Confidence 57999999999999999999865 589999999998888876665654432211000000
Q ss_pred EEeecCCcccCCCCCCCCCcEEE--cHHHHHHH-HHHHHHHcCCEEecCceEEEEEEcC--CC--cEEEEEeccCcccCC
Q 007716 187 WFLTKDRAFSLPSPFSNRGNYVI--SLSQLVRW-LGGKAEELGVEIYPGFAASEILYDA--DN--KVIGIGTNDMGIAKD 259 (592)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v--~~~~l~~~-L~~~a~~~Gv~i~~g~~v~~i~~~~--~g--~v~~V~~~d~g~~~~ 259 (592)
.|+. ++..+....+.|++ +...+... |.+.+...+|+++.-+.|++++..+ +| +|.||.++..=+..+
T Consensus 135 LFL~-----EigvpYedegdYVVVKHAALFtSTvmsk~LalPNVKLFNAtavEDLivk~g~~g~~rvaGVVTNWtLV~qn 209 (328)
T KOG2960|consen 135 LFLQ-----EIGVPYEDEGDYVVVKHAALFTSTVMSKVLALPNVKLFNATAVEDLIVKPGEKGEVRVAGVVTNWTLVTQN 209 (328)
T ss_pred HHHH-----HhCCCcccCCCEEEEeeHHHHHHHHHHHHhcCCcceeechhhhhhhhcccCcCCceEEEEEEeeeEEeeec
Confidence 0000 01112333455654 33444443 4444444579999999998887653 23 455665543111111
Q ss_pred CCcccccccceEEEcCEEEEecCCCCcc
Q 007716 260 GSKKENFQRGVELRGRITLLAEGCRGSL 287 (592)
Q Consensus 260 G~~~~~f~~g~~i~a~~vI~A~G~~s~v 287 (592)
-.... -.+-..+++.+||-++|..+..
T Consensus 210 HgtQs-CMDPNviea~~vvS~tGHDGPF 236 (328)
T KOG2960|consen 210 HGTQS-CMDPNVIEAAVVVSTTGHDGPF 236 (328)
T ss_pred cCccc-cCCCCeeeEEEEEEccCCCCCc
Confidence 11111 1123578999999999977664
No 212
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.72 E-value=1.5e-07 Score=76.37 Aligned_cols=79 Identities=25% Similarity=0.343 Sum_probs=66.2
Q ss_pred cEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcEEE
Q 007716 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFWF 188 (592)
Q Consensus 109 DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~ 188 (592)
.|+|||||+.|+.+|..|++. |.+|+|+|+.+.+.. . +.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~------g~~vtli~~~~~~~~-~-----------------~~----------------- 39 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAEL------GKEVTLIERSDRLLP-G-----------------FD----------------- 39 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHT------TSEEEEEESSSSSST-T-----------------SS-----------------
T ss_pred CEEEECcCHHHHHHHHHHHHh------CcEEEEEeccchhhh-h-----------------cC-----------------
Confidence 389999999999999999999 999999999886531 0 00
Q ss_pred eecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEecc
Q 007716 189 LTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTND 253 (592)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d 253 (592)
..+...+.+.+++.||++++++.+.++..++++ +. |++.|
T Consensus 40 -----------------------~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~-~~-V~~~~ 79 (80)
T PF00070_consen 40 -----------------------PDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDG-VE-VTLED 79 (80)
T ss_dssp -----------------------HHHHHHHHHHHHHTTEEEEESEEEEEEEEETTS-EE-EEEET
T ss_pred -----------------------HHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCE-EE-EEEec
Confidence 366777888888899999999999999999877 65 88765
No 213
>PLN02676 polyamine oxidase
Probab=98.72 E-value=2.9e-06 Score=92.93 Aligned_cols=41 Identities=32% Similarity=0.557 Sum_probs=37.2
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCC-cEEEEcCCCCCCCcc
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDL-SVCVVEKGAEVGAHI 152 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~-~V~vlEk~~~~g~~~ 152 (592)
..+||+|||||++||+||+.|++. |. +|+|+|++..+|+.+
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~------g~~~v~vlE~~~~~GG~~ 66 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEA------GIEDILILEATDRIGGRM 66 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHc------CCCcEEEecCCCCCCCcc
Confidence 368999999999999999999998 98 599999999888854
No 214
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=98.71 E-value=9.9e-07 Score=91.84 Aligned_cols=195 Identities=18% Similarity=0.172 Sum_probs=110.6
Q ss_pred cEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCCC
Q 007716 206 NYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRG 285 (592)
Q Consensus 206 ~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s 285 (592)
...++...++..|.+.+++.|++++.+++|+++..++ +.+.+|.+.+ | +++||.||+|+|.++
T Consensus 131 ~g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~-~~~~~v~~~~---------------g-~~~a~~vV~a~G~~~ 193 (337)
T TIGR02352 131 DAHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIRG-EKVTAIVTPS---------------G-DVQADQVVLAAGAWA 193 (337)
T ss_pred CceEChHHHHHHHHHHHHHcCCEEEccceEEEEEeeC-CEEEEEEcCC---------------C-EEECCEEEEcCChhh
Confidence 4567899999999999999999999999999998765 5577787765 4 799999999999987
Q ss_pred cchHHHHHHcCCCcccccCcccceeeEEEEEeecCCCCCCCcEEEEeccCCCCCCcceEEEEEcCCCeEEEEEEecccCC
Q 007716 286 SLSEKLIKNFKLREKSHAQHQTYALGIKEVWEIDEGKHNPGEILHTLGWPLDQKTYGGSFLYHMNDRQIALGLVVALNYH 365 (592)
Q Consensus 286 ~vr~~l~~~~~l~~~~~~~~~~~~~g~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~vg~~~~~~~~ 365 (592)
. .+.+ ..+. +.. +.....+.+.. ...+...... ... ...++.|..++.+.+|.....+-.
T Consensus 194 ~---~l~~-~~~~------~~~---g~~~~~~~~~~-~~~~~~~~~~--~~~----~~~y~~p~~~g~~~iG~~~~~~~~ 253 (337)
T TIGR02352 194 G---ELLP-LPLR------PVR---GQPLRLEAPAV-PLLNRPLRAV--VYG----RRVYIVPRRDGRLVVGATMEESGF 253 (337)
T ss_pred h---hccc-CCcc------ccC---ceEEEeecccc-ccCCcccceE--EEc----CCEEEEEcCCCeEEEEEeccccCc
Confidence 4 2322 1111 110 11111111111 0111111000 001 124677877888888855432211
Q ss_pred CCCCCcHHHHHHhh-----cCccccccccCCceeeecceeeecCCccccCcccCCCEEEEcCC-----CcccCCCCccch
Q 007716 366 NPFLNPYEEFQKFK-----HHPAIKPLLEGGTVVQYGARTLNEGGLQSIPYPVFPGGAIIGCA-----AGFLNVPKIKGT 435 (592)
Q Consensus 366 ~~~~~~~~~~~~~~-----~~p~i~~~l~~~~~~~~~~~~i~~gg~~~~p~~~~~~v~LiGDA-----A~~~~P~~g~G~ 435 (592)
+...+ .+..+.+. ..|.+ .+.+... .+.|+. ..+.++..+||.. ......+.|.|+
T Consensus 254 ~~~~~-~~~~~~l~~~~~~~~P~l----~~~~~~~------~~~g~r---~~t~D~~piig~~~~~~~~~~~~g~~g~G~ 319 (337)
T TIGR02352 254 DTTPT-LGGIKELLRDAYTILPAL----KEARLLE------TWAGLR---PGTPDNLPYIGEHPEDRRLLIATGHYRNGI 319 (337)
T ss_pred cCCCC-HHHHHHHHHHHHHhCCCc----ccCcHHH------heecCC---CCCCCCCCEeCccCCCCCEEEEcccccCce
Confidence 21122 22222221 12222 1111111 123333 2344566677732 334456788999
Q ss_pred HHHHHHHHHHHHHHhh
Q 007716 436 HTAMKSGMLAAEAGFG 451 (592)
Q Consensus 436 ~~Am~dg~~aA~~l~~ 451 (592)
.++...|.++|+.|..
T Consensus 320 ~~~p~~g~~la~~i~~ 335 (337)
T TIGR02352 320 LLAPATAEVIADLILG 335 (337)
T ss_pred ehhhHHHHHHHHHHhc
Confidence 9999999999998864
No 215
>PRK07208 hypothetical protein; Provisional
Probab=98.71 E-value=2.1e-07 Score=102.07 Aligned_cols=42 Identities=43% Similarity=0.567 Sum_probs=38.7
Q ss_pred cccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcc
Q 007716 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI 152 (592)
Q Consensus 105 ~~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~ 152 (592)
++..||+|||||++||+||+.|++. |++|+|+|+.+.+||.+
T Consensus 2 ~~~~~vvIiGaGisGL~aA~~L~~~------g~~v~v~E~~~~~GG~~ 43 (479)
T PRK07208 2 TNKKSVVIIGAGPAGLTAAYELLKR------GYPVTVLEADPVVGGIS 43 (479)
T ss_pred CCCCcEEEECcCHHHHHHHHHHHHC------CCcEEEEecCCCCCcee
Confidence 3467999999999999999999998 99999999999999865
No 216
>PLN02487 zeta-carotene desaturase
Probab=98.66 E-value=1.6e-05 Score=88.17 Aligned_cols=60 Identities=18% Similarity=0.198 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHcCCEEecCceEEEEEEcC--CC--cEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCC
Q 007716 213 QLVRWLGGKAEELGVEIYPGFAASEILYDA--DN--KVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCR 284 (592)
Q Consensus 213 ~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~--~g--~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~ 284 (592)
.|.+-+.+.+++.|++|++++.|.+|..+. ++ .+++|++.+ +++ +.++.||.||.|.+.+
T Consensus 296 ~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~-----~~~-------~~~~~aD~VV~A~p~~ 359 (569)
T PLN02487 296 RLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSK-----ATE-------KEIVKADAYVAACDVP 359 (569)
T ss_pred HHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEec-----CCC-------ceEEECCEEEECCCHH
Confidence 477888888999999999999999999874 23 377888731 111 3578999999999977
No 217
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=5.1e-08 Score=91.42 Aligned_cols=117 Identities=23% Similarity=0.312 Sum_probs=81.3
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcE
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~ 186 (592)
.-.|+|||.|||+.+|||.+++. .++.+|+|-.- .++ +..|+.+....-.|-+|.+.+
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaara------elkPllfEG~~-~~~-i~pGGQLtTTT~veNfPGFPd-------------- 65 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARA------ELKPLLFEGMM-ANG-IAPGGQLTTTTDVENFPGFPD-------------- 65 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhc------ccCceEEeeee-ccC-cCCCceeeeeeccccCCCCCc--------------
Confidence 45799999999999999999999 99999999443 232 222333322211122221111
Q ss_pred EEeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCccccc
Q 007716 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (592)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f 266 (592)
-+...+|.+.|++++++.|.+|+..+ |.++..... ...+.+..
T Consensus 66 ---------------------gi~G~~l~d~mrkqs~r~Gt~i~tEt-Vskv~~ssk--pF~l~td~------------- 108 (322)
T KOG0404|consen 66 ---------------------GITGPELMDKMRKQSERFGTEIITET-VSKVDLSSK--PFKLWTDA------------- 108 (322)
T ss_pred ---------------------ccccHHHHHHHHHHHHhhcceeeeee-hhhccccCC--CeEEEecC-------------
Confidence 13447999999999999999999874 777766542 33455543
Q ss_pred ccceEEEcCEEEEecCCCC
Q 007716 267 QRGVELRGRITLLAEGCRG 285 (592)
Q Consensus 267 ~~g~~i~a~~vI~A~G~~s 285 (592)
..++||.||+|+|+..
T Consensus 109 ---~~v~~~avI~atGAsA 124 (322)
T KOG0404|consen 109 ---RPVTADAVILATGASA 124 (322)
T ss_pred ---CceeeeeEEEecccce
Confidence 7899999999999864
No 218
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=98.66 E-value=6.7e-06 Score=89.90 Aligned_cols=60 Identities=18% Similarity=0.173 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHcCCEEecCceEEEEEEcC--CC--cEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCCC
Q 007716 214 LVRWLGGKAEELGVEIYPGFAASEILYDA--DN--KVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRG 285 (592)
Q Consensus 214 l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~--~g--~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s 285 (592)
+.+-|.+.+++.|++|+.+++|++|..++ ++ .+++|.+.+ |. .+.++.||.||.|+..+.
T Consensus 221 l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~------g~------~~~~~~aD~VVlA~p~~~ 284 (474)
T TIGR02732 221 LTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSK------PE------GKKVIKADAYVAACDVPG 284 (474)
T ss_pred HHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEec------CC------cceEEECCEEEECCChHH
Confidence 55668888888999999999999998764 23 266777643 11 025689999999999773
No 219
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.66 E-value=1.7e-07 Score=98.50 Aligned_cols=67 Identities=22% Similarity=0.288 Sum_probs=55.6
Q ss_pred cHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCCCc
Q 007716 210 SLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 286 (592)
Q Consensus 210 ~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~ 286 (592)
+-.+++-.+.=-|.++|..+....+|.++..++++++.|+...| .-.|++ .+|+|+.||.|||..+-
T Consensus 222 nDaRmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD---~iTG~e-------~~I~Ak~VVNATGpfsD 288 (680)
T KOG0042|consen 222 NDARMNLAVALTAARNGATVLNHVEVVSLLKDKDGKVIGARARD---HITGKE-------YEIRAKVVVNATGPFSD 288 (680)
T ss_pred chHHHHHHHHHHHHhcchhhhhHHHHHHHhhCCCCceeeeEEEE---eecCcE-------EEEEEEEEEeCCCCccH
Confidence 34677777777788899999999999999999999898988887 345553 78999999999999874
No 220
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.65 E-value=2.9e-08 Score=104.77 Aligned_cols=146 Identities=16% Similarity=0.281 Sum_probs=86.3
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCC-CCCcccc--cCccChH----HHHHhhHhhhhcCCCeee
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAE-VGAHIIS--GNVFEPR----ALNELLPQWKQEEAPIRV 179 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~-~g~~~~~--g~~i~~~----~l~~ll~~~~~~~~~~~~ 179 (592)
.|||+|||||-||+.||...+|. |.+++++-.... +|.-.++ -|.+... .++.|-..+... .
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARm------G~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~-----~ 72 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARM------GAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKA-----A 72 (621)
T ss_pred CCceEEECCCccchHHHHhhhcc------CCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHh-----h
Confidence 59999999999999999999999 999999886543 3321111 1111111 111111111100 0
Q ss_pred eccCCcEEEeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHc-CCEEecCceEEEEEEcCCCcEEEEEeccCcccC
Q 007716 180 PVSSDKFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGIAK 258 (592)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~-Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~ 258 (592)
....-++..++..++-.+. .....+++....++|.+.+++. ++.|+.+ .|++++.+++..|+||.+.+
T Consensus 73 D~~~IQ~r~LN~sKGPAVr-----a~RaQaDk~~Y~~~mk~~le~~~NL~l~q~-~v~dli~e~~~~v~GV~t~~----- 141 (621)
T COG0445 73 DKAGIQFRMLNSSKGPAVR-----APRAQADKWLYRRAMKNELENQPNLHLLQG-EVEDLIVEEGQRVVGVVTAD----- 141 (621)
T ss_pred hhcCCchhhccCCCcchhc-----chhhhhhHHHHHHHHHHHHhcCCCceehHh-hhHHHhhcCCCeEEEEEeCC-----
Confidence 0011122223322211110 0122345556666666666654 6888866 57788776644689999987
Q ss_pred CCCcccccccceEEEcCEEEEecCCC
Q 007716 259 DGSKKENFQRGVELRGRITLLAEGCR 284 (592)
Q Consensus 259 ~G~~~~~f~~g~~i~a~~vI~A~G~~ 284 (592)
|..+.|+.||+++|..
T Consensus 142 ----------G~~~~a~aVVlTTGTF 157 (621)
T COG0445 142 ----------GPEFHAKAVVLTTGTF 157 (621)
T ss_pred ----------CCeeecCEEEEeeccc
Confidence 7899999999999975
No 221
>PRK12831 putative oxidoreductase; Provisional
Probab=98.64 E-value=1.6e-06 Score=94.42 Aligned_cols=42 Identities=31% Similarity=0.533 Sum_probs=37.8
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCccc
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII 153 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~ 153 (592)
...||+|||||||||++|+.|++. |++|+|+|+...+|+...
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~------G~~V~v~e~~~~~GG~l~ 180 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKM------GYDVTIFEALHEPGGVLV 180 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhC------CCeEEEEecCCCCCCeee
Confidence 468999999999999999999999 999999999887777543
No 222
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.64 E-value=1e-07 Score=111.44 Aligned_cols=98 Identities=23% Similarity=0.307 Sum_probs=71.3
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcE
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~ 186 (592)
..+|+|||||||||+||+.|++. |++|+|+|+.+.+|+-...|
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~------G~~VtVfE~~~~~GG~l~yG------------------------------- 348 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVE------GFPVTVFEAFHDLGGVLRYG------------------------------- 348 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHC------CCeEEEEeeCCCCCceEEcc-------------------------------
Confidence 57899999999999999999999 99999999998887632111
Q ss_pred EEeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCccccc
Q 007716 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (592)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f 266 (592)
+| .|-.. .++.....+++++.||++++|+.+ |. .+++.+
T Consensus 349 ----------IP-------~~rlp-~~vi~~~i~~l~~~Gv~f~~n~~v--------G~--dit~~~------------- 387 (944)
T PRK12779 349 ----------IP-------EFRLP-NQLIDDVVEKIKLLGGRFVKNFVV--------GK--TATLED------------- 387 (944)
T ss_pred ----------CC-------CCcCh-HHHHHHHHHHHHhhcCeEEEeEEe--------cc--EEeHHH-------------
Confidence 01 01111 355666677888899999998765 21 244433
Q ss_pred ccceEEEcCEEEEecCCC
Q 007716 267 QRGVELRGRITLLAEGCR 284 (592)
Q Consensus 267 ~~g~~i~a~~vI~A~G~~ 284 (592)
.....+|.||+|+|++
T Consensus 388 --l~~~~yDAV~LAtGA~ 403 (944)
T PRK12779 388 --LKAAGFWKIFVGTGAG 403 (944)
T ss_pred --hccccCCEEEEeCCCC
Confidence 2345689999999996
No 223
>PRK09897 hypothetical protein; Provisional
Probab=98.63 E-value=2.9e-07 Score=100.99 Aligned_cols=148 Identities=23% Similarity=0.315 Sum_probs=79.9
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcc-cccCccChHHH------------HHhhHhhhhcC
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI-ISGNVFEPRAL------------NELLPQWKQEE 174 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~-~~g~~i~~~~l------------~~ll~~~~~~~ 174 (592)
.+|+||||||+|+++|++|.+. ...++|+|+|++..+|... .+.. -+.+.+ ..-+-+|....
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~----~~~l~V~lfEp~~~~G~G~ays~~-~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~ 76 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQ----QTPLSISIFEQADEAGVGMPYSDE-ENSKMMLANIASIEIPPIYCTYLEWLQKQ 76 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhc----CCCCcEEEEecCCCCCcceeecCC-CChHHHHhcccccccCCChHHHHHHhhhh
Confidence 4799999999999999999885 2357999999988777432 1211 000100 01122232211
Q ss_pred CCeee-eccCCcEEEeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcC--CEEecCceEEEEEEcCCCcEEEEEe
Q 007716 175 APIRV-PVSSDKFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELG--VEIYPGFAASEILYDADNKVIGIGT 251 (592)
Q Consensus 175 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G--v~i~~g~~v~~i~~~~~g~v~~V~~ 251 (592)
..... ....+ ..-+. ...+ +| -...+.|. ....+.+.+.+.+.| ++++.+++|+++..++++ + .|.+
T Consensus 77 ~~~~~~~~g~~-~~~l~-~~~f-~P--R~l~G~YL---~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g-~-~V~t 146 (534)
T PRK09897 77 EDSHLQRYGVK-KETLH-DRQF-LP--RILLGEYF---RDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAG-V-MLAT 146 (534)
T ss_pred hHHHHHhcCCc-ceeec-CCcc-CC--eecchHHH---HHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCE-E-EEEE
Confidence 00000 00000 00000 0000 00 00011111 344444556666777 788889999999887643 3 4665
Q ss_pred ccCcccCCCCcccccccceEEEcCEEEEecCCC
Q 007716 252 NDMGIAKDGSKKENFQRGVELRGRITLLAEGCR 284 (592)
Q Consensus 252 ~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~ 284 (592)
.+ +|..+.||.||+|+|..
T Consensus 147 ~~--------------gg~~i~aD~VVLAtGh~ 165 (534)
T PRK09897 147 NQ--------------DLPSETFDLAVIATGHV 165 (534)
T ss_pred CC--------------CCeEEEcCEEEECCCCC
Confidence 43 13678999999999964
No 224
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.63 E-value=6.5e-07 Score=92.91 Aligned_cols=83 Identities=25% Similarity=0.406 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCCCcc-hH
Q 007716 211 LSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL-SE 289 (592)
Q Consensus 211 ~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~v-r~ 289 (592)
...+...+.+.++++|++|++++.|.+++..+ +.+.+|.+.+ |.++.+|+||+|.|..+.= -.
T Consensus 172 l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~-~~~~~v~~~~---------------g~~i~~~~vvlA~Grsg~dw~~ 235 (486)
T COG2509 172 LPKVVKNIREYLESLGGEIRFNTEVEDIEIED-NEVLGVKLTK---------------GEEIEADYVVLAPGRSGRDWFE 235 (486)
T ss_pred hHHHHHHHHHHHHhcCcEEEeeeEEEEEEecC-CceEEEEccC---------------CcEEecCEEEEccCcchHHHHH
Confidence 46888999999999999999999999999887 5577788876 7899999999999987742 34
Q ss_pred HHHHHcCCCcccccCcccceeeEE
Q 007716 290 KLIKNFKLREKSHAQHQTYALGIK 313 (592)
Q Consensus 290 ~l~~~~~l~~~~~~~~~~~~~g~~ 313 (592)
.+.+++|+.. .+..+.+|++
T Consensus 236 ~l~~K~Gv~~----~~~p~dIGVR 255 (486)
T COG2509 236 MLHKKLGVKM----RAKPFDIGVR 255 (486)
T ss_pred HHHHhcCccc----ccCCeeEEEE
Confidence 4556677763 2445666665
No 225
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.62 E-value=3.3e-07 Score=108.58 Aligned_cols=123 Identities=23% Similarity=0.288 Sum_probs=77.1
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCc
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDK 185 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~ 185 (592)
..+||+|||||||||+||+.|++. |++|+|+|+.+.+|+......
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~------G~~V~liD~~~~~GG~~~~~~----------------------------- 206 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARA------GARVILVDEQPEAGGSLLSEA----------------------------- 206 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhC------CCcEEEEecCCCCCCeeeccc-----------------------------
Confidence 468999999999999999999998 999999999988776321000
Q ss_pred EEEeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcC-CEEecCceEEEEEEcCCCcEEEEEeccCc--ccCCCCc
Q 007716 186 FWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELG-VEIYPGFAASEILYDADNKVIGIGTNDMG--IAKDGSK 262 (592)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G-v~i~~g~~v~~i~~~~~g~v~~V~~~d~g--~~~~G~~ 262 (592)
. .++ ..+..++...+.+++.+.+ |+++.++.|..+..+ +.+..+...+.. ...++..
T Consensus 207 -------~--~~~---------g~~~~~~~~~~~~~l~~~~~v~v~~~t~V~~i~~~--~~v~~v~~~~~~~~~~~~~~~ 266 (985)
T TIGR01372 207 -------E--TID---------GKPAADWAAATVAELTAMPEVTLLPRTTAFGYYDH--NTVGALERVTDHLDAPPKGVP 266 (985)
T ss_pred -------c--ccC---------CccHHHHHHHHHHHHhcCCCcEEEcCCEEEEEecC--CeEEEEEEeeeccccccCCcc
Confidence 0 000 0111355555677776664 999999999887432 333222211100 0001110
Q ss_pred ccccccceEEEcCEEEEecCCCCc
Q 007716 263 KENFQRGVELRGRITLLAEGCRGS 286 (592)
Q Consensus 263 ~~~f~~g~~i~a~~vI~A~G~~s~ 286 (592)
-+.-.++++|.||+|+|+...
T Consensus 267 ---~~~~~~i~a~~VILATGa~~r 287 (985)
T TIGR01372 267 ---RERLWRIRAKRVVLATGAHER 287 (985)
T ss_pred ---ccceEEEEcCEEEEcCCCCCc
Confidence 001136899999999998753
No 226
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.60 E-value=3.8e-06 Score=87.79 Aligned_cols=42 Identities=45% Similarity=0.609 Sum_probs=39.2
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCccc
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII 153 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~ 153 (592)
...||||||||.+||++|+.|.+. |++|+|+|-++.+|+++.
T Consensus 6 ~~~~viivGaGlaGL~AA~eL~ka------G~~v~ilEar~r~GGR~~ 47 (450)
T COG1231 6 KTADVIIVGAGLAGLSAAYELKKA------GYQVQILEARDRVGGRSL 47 (450)
T ss_pred CCCcEEEECCchHHHHHHHHHhhc------CcEEEEEeccCCcCceeE
Confidence 468999999999999999999999 999999999999998764
No 227
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.57 E-value=1.5e-06 Score=93.41 Aligned_cols=60 Identities=15% Similarity=0.227 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCCC
Q 007716 211 LSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRG 285 (592)
Q Consensus 211 ~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s 285 (592)
.++|.+.|.+.++..|.+++++++|.+|..++++.+++|++.+ |++++||.||......+
T Consensus 231 ~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~---------------Ge~i~a~~VV~~~s~~p 290 (443)
T PTZ00363 231 LGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEG---------------GEVAKCKLVICDPSYFP 290 (443)
T ss_pred HHHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECC---------------CcEEECCEEEECccccc
Confidence 3678888888889999999999999999988767788898876 67899999998666543
No 228
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.57 E-value=4.2e-06 Score=90.91 Aligned_cols=42 Identities=36% Similarity=0.487 Sum_probs=37.5
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCccc
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII 153 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~ 153 (592)
..+||+|||||||||++|..|++. |++|+|+|+.+.+|+...
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~------G~~V~vie~~~~~GG~l~ 173 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKA------GHSVTVFEALHKPGGVVT 173 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC------CCcEEEEecCCCCCcEee
Confidence 458999999999999999999998 999999999887876543
No 229
>PLN03000 amine oxidase
Probab=98.57 E-value=3.7e-06 Score=95.78 Aligned_cols=42 Identities=38% Similarity=0.534 Sum_probs=38.4
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCccc
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII 153 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~ 153 (592)
...+|+|||||++||++|..|++. |++|+|+|++..+|+++.
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~------G~~V~VlE~~~riGGRi~ 224 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRF------GFKVTVLEGRKRPGGRVY 224 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHC------CCcEEEEEccCcCCCCcc
Confidence 358999999999999999999998 999999999999988763
No 230
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=98.56 E-value=2.6e-07 Score=99.22 Aligned_cols=68 Identities=18% Similarity=0.223 Sum_probs=58.1
Q ss_pred CCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEec
Q 007716 202 SNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAE 281 (592)
Q Consensus 202 ~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~ 281 (592)
...+..+++...+|+.|+..|.+.|+.|+.++.|++|....++ +.+|.|.. ..|++..||.|+
T Consensus 177 y~P~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~-~~gVeT~~----------------G~iet~~~VNaa 239 (856)
T KOG2844|consen 177 YSPGDGVMDPAGLCQALARAASALGALVIENCPVTGLHVETDK-FGGVETPH----------------GSIETECVVNAA 239 (856)
T ss_pred ecCCCcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecCC-ccceeccC----------------cceecceEEech
Confidence 3445667899999999999999999999999999999887744 45898875 478999999999
Q ss_pred CCCCc
Q 007716 282 GCRGS 286 (592)
Q Consensus 282 G~~s~ 286 (592)
|.|.+
T Consensus 240 GvWAr 244 (856)
T KOG2844|consen 240 GVWAR 244 (856)
T ss_pred hHHHH
Confidence 99974
No 231
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.56 E-value=2.2e-07 Score=85.82 Aligned_cols=147 Identities=21% Similarity=0.305 Sum_probs=75.0
Q ss_pred EEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcE-EEe
Q 007716 111 VIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF-WFL 189 (592)
Q Consensus 111 vIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~-~~~ 189 (592)
+|||||++|++++.+|.+.. ...+.++|+|+|+.. .|. |+...+..-..++-.................| .|+
T Consensus 1 AIIG~G~~G~~~l~~L~~~~-~~~~~~~I~vfd~~~-~G~----G~~~~~~~~~~~llN~~a~~~s~~~~~~~~~f~~Wl 74 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQA-DPKPPLEITVFDPSP-FGA----GGAYRPDQPPSHLLNTPADQMSLFPDDPGDDFVDWL 74 (156)
T ss_pred CEECcCHHHHHHHHHHHHhc-CCCCCCEEEEEcCCC-ccc----cccCCCCCChHHhhcccccccccccccCCCCHHHHH
Confidence 59999999999999999984 334578999999955 342 22222210000000000000000000000111 111
Q ss_pred ecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHH------cCCEEe-cCceEEEEEEcCCCcEEEEEeccCcccCCCCc
Q 007716 190 TKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEE------LGVEIY-PGFAASEILYDADNKVIGIGTNDMGIAKDGSK 262 (592)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~------~Gv~i~-~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~ 262 (592)
.....-+ .......-.++|..+-++|.+.+++ .|++|. ...+|++|...+++. .|.+.+
T Consensus 75 ~~~~~~~---~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~~~~--~v~~~~--------- 140 (156)
T PF13454_consen 75 RANGADE---AEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDDDGY--RVVTAD--------- 140 (156)
T ss_pred HhcCccc---ccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcCCcE--EEEECC---------
Confidence 1111000 0000112234555555555544332 354432 355899998887653 466665
Q ss_pred ccccccceEEEcCEEEEecCC
Q 007716 263 KENFQRGVELRGRITLLAEGC 283 (592)
Q Consensus 263 ~~~f~~g~~i~a~~vI~A~G~ 283 (592)
|..+.+|.||+|+|.
T Consensus 141 ------g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 141 ------GQSIRADAVVLATGH 155 (156)
T ss_pred ------CCEEEeCEEEECCCC
Confidence 678999999999994
No 232
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.56 E-value=1.9e-07 Score=107.93 Aligned_cols=39 Identities=38% Similarity=0.572 Sum_probs=35.9
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCC
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGA 150 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~ 150 (592)
...+|+|||||||||+||+.|++. |++|+|+|+.+.+|+
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~------G~~VtV~Ek~~~~GG 576 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARA------GHPVTVFEREENAGG 576 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHc------CCeEEEEecccccCc
Confidence 357899999999999999999999 999999999887776
No 233
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.56 E-value=3.8e-06 Score=91.86 Aligned_cols=41 Identities=37% Similarity=0.597 Sum_probs=37.1
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcc
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI 152 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~ 152 (592)
...+|+||||||||+++|..|++. |++|+|+|+.+.+|+..
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~------G~~V~vie~~~~~GG~l 182 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARA------GHKVTVFERADRIGGLL 182 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhC------CCcEEEEecCCCCCcee
Confidence 357999999999999999999998 99999999998887654
No 234
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.55 E-value=5.7e-07 Score=94.40 Aligned_cols=67 Identities=19% Similarity=0.277 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHH-cCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCCCcch
Q 007716 211 LSQLVRWLGGKAEE-LGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLS 288 (592)
Q Consensus 211 ~~~l~~~L~~~a~~-~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~vr 288 (592)
...+.+.|.+++++ .+|+|+.++.+.++..+++..+.||.+.+ .+++ -..+.|+.||+|+|+-+.+-
T Consensus 132 G~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~~~~Gv~~~~----~~~~-------~~~~~a~~vVLATGG~g~ly 199 (518)
T COG0029 132 GKEIMTALLKKVRNRPNITVLEGAEALDLIIEDGIGVAGVLVLN----RNGE-------LGTFRAKAVVLATGGLGGLY 199 (518)
T ss_pred cHHHHHHHHHHHhcCCCcEEEecchhhhhhhcCCceEeEEEEec----CCCe-------EEEEecCeEEEecCCCcccc
Confidence 46888999999987 58999999999999988743566888865 1112 26899999999999988653
No 235
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.53 E-value=6.6e-07 Score=96.05 Aligned_cols=114 Identities=25% Similarity=0.295 Sum_probs=86.3
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCc
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDK 185 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~ 185 (592)
..-.++|||||+.|+..|..++++ |.+|+|+|+.+.+-. .+.
T Consensus 172 lP~~lvIiGgG~IGlE~a~~~~~L------G~~VTiie~~~~iLp------------------~~D-------------- 213 (454)
T COG1249 172 LPKSLVIVGGGYIGLEFASVFAAL------GSKVTVVERGDRILP------------------GED-------------- 213 (454)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc------CCcEEEEecCCCCCC------------------cCC--------------
Confidence 345699999999999999999999 999999999875421 110
Q ss_pred EEEeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccc
Q 007716 186 FWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKEN 265 (592)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~ 265 (592)
.++.+.+.+.+++.|+++++++.++.+..++++ + .|.+.+ |.
T Consensus 214 --------------------------~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~-v-~v~~~~------g~---- 255 (454)
T COG1249 214 --------------------------PEISKELTKQLEKGGVKILLNTKVTAVEKKDDG-V-LVTLED------GE---- 255 (454)
T ss_pred --------------------------HHHHHHHHHHHHhCCeEEEccceEEEEEecCCe-E-EEEEec------CC----
Confidence 477888888888888999999999999887755 3 566654 22
Q ss_pred cccceEEEcCEEEEecCCCCcchHHHHHHcCCC
Q 007716 266 FQRGVELRGRITLLAEGCRGSLSEKLIKNFKLR 298 (592)
Q Consensus 266 f~~g~~i~a~~vI~A~G~~s~vr~~l~~~~~l~ 298 (592)
+.++++|.|++|+|..+.+-..-++..|++
T Consensus 256 ---~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~ 285 (454)
T COG1249 256 ---GGTIEADAVLVAIGRKPNTDGLGLENAGVE 285 (454)
T ss_pred ---CCEEEeeEEEEccCCccCCCCCChhhcCce
Confidence 127899999999998887543223333444
No 236
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=98.52 E-value=2.1e-07 Score=95.81 Aligned_cols=61 Identities=23% Similarity=0.394 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCCCcc
Q 007716 211 LSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (592)
Q Consensus 211 ~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~v 287 (592)
-+.+...+.+.+++.|.+|++...|.+|..|+ |.++||.+.| |.+++++.||--++.+-..
T Consensus 263 ~Gavs~aia~~~~~~GaeI~tka~Vq~Illd~-gka~GV~L~d---------------G~ev~sk~VvSNAt~~~Tf 323 (561)
T KOG4254|consen 263 MGAVSFAIAEGAKRAGAEIFTKATVQSILLDS-GKAVGVRLAD---------------GTEVRSKIVVSNATPWDTF 323 (561)
T ss_pred hhHHHHHHHHHHHhccceeeehhhhhheeccC-CeEEEEEecC---------------CcEEEeeeeecCCchHHHH
Confidence 37888999999999999999999999999998 8999999987 7899999999888877654
No 237
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.52 E-value=6e-07 Score=97.54 Aligned_cols=113 Identities=21% Similarity=0.341 Sum_probs=70.6
Q ss_pred cEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcEEE
Q 007716 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFWF 188 (592)
Q Consensus 109 DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~ 188 (592)
+|||||||+||+++|..|+++ +++.+|+|||+.+..+... ++ +. ++
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~----~~~~~Vtli~~~~~~~~~~-~~--~~---------------------------~~ 47 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRL----NKELEITVYEKTDIVSFGA-CG--LP---------------------------YF 47 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHH----CCCCcEEEEECCCcceeec-CC--Cc---------------------------eE
Confidence 599999999999999999987 3356999999987543210 00 00 00
Q ss_pred eecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCccccccc
Q 007716 189 LTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQR 268 (592)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~ 268 (592)
... ..-...++.....+.+++.|++++.+++|+++..+++ . |.+.+. .+
T Consensus 48 ~~~---------------~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~--~--v~~~~~---~~--------- 96 (444)
T PRK09564 48 VGG---------------FFDDPNTMIARTPEEFIKSGIDVKTEHEVVKVDAKNK--T--ITVKNL---KT--------- 96 (444)
T ss_pred ecc---------------ccCCHHHhhcCCHHHHHHCCCeEEecCEEEEEECCCC--E--EEEEEC---CC---------
Confidence 000 0000112233334555668999999999999877652 2 333220 01
Q ss_pred ceEEE--cCEEEEecCCCCc
Q 007716 269 GVELR--GRITLLAEGCRGS 286 (592)
Q Consensus 269 g~~i~--a~~vI~A~G~~s~ 286 (592)
|.+++ +|++|+|+|+++.
T Consensus 97 ~~~~~~~yd~lviAtG~~~~ 116 (444)
T PRK09564 97 GSIFNDTYDKLMIATGARPI 116 (444)
T ss_pred CCEEEecCCEEEECCCCCCC
Confidence 24455 9999999999764
No 238
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.49 E-value=2.1e-06 Score=90.83 Aligned_cols=64 Identities=25% Similarity=0.298 Sum_probs=52.1
Q ss_pred EcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCC-Cc
Q 007716 209 ISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCR-GS 286 (592)
Q Consensus 209 v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~-s~ 286 (592)
+...+|.+.|.+.+++.|++++.+++|.++..++ +.+.+|.+.+ |. ..+++||.+|+|+|++ |.
T Consensus 260 v~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~-~~v~~V~t~~------g~-------~~~l~AD~vVLAaGaw~S~ 324 (419)
T TIGR03378 260 LLGIRLEEALKHRFEQLGGVMLPGDRVLRAEFEG-NRVTRIHTRN------HR-------DIPLRADHFVLASGSFFSN 324 (419)
T ss_pred CcHHHHHHHHHHHHHHCCCEEEECcEEEEEEeeC-CeEEEEEecC------Cc-------cceEECCEEEEccCCCcCH
Confidence 4467888999999999999999999999998776 5676777654 10 1589999999999999 74
No 239
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.48 E-value=3e-07 Score=106.78 Aligned_cols=40 Identities=43% Similarity=0.547 Sum_probs=36.5
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCc
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAH 151 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~ 151 (592)
...+|+|||||||||+||+.|++. |++|+|+|+.+.+|+.
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~------G~~VTV~Ek~~~lGG~ 575 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARA------GHPVTVFEKKEKPGGV 575 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHC------CCeEEEEecccccCce
Confidence 357999999999999999999999 9999999999887763
No 240
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.47 E-value=2e-07 Score=73.01 Aligned_cols=35 Identities=40% Similarity=0.585 Sum_probs=32.1
Q ss_pred EECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcc
Q 007716 112 IVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI 152 (592)
Q Consensus 112 IVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~ 152 (592)
|||||++||++|+.|++. |.+|+|+|+.+.+|+.+
T Consensus 1 IiGaG~sGl~aA~~L~~~------g~~v~v~E~~~~~GG~~ 35 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKA------GYRVTVFEKNDRLGGRA 35 (68)
T ss_dssp EES-SHHHHHHHHHHHHT------TSEEEEEESSSSSSGGG
T ss_pred CEeeCHHHHHHHHHHHHC------CCcEEEEecCcccCcce
Confidence 899999999999999998 99999999999998854
No 241
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.46 E-value=5.7e-07 Score=97.59 Aligned_cols=42 Identities=26% Similarity=0.325 Sum_probs=35.8
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCc
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAH 151 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~ 151 (592)
...+|+||||||||++||..|++. .+|++|+|+|+.+.+|+.
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~----~~g~~Vtv~E~~p~pgGl 66 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKA----HDGARVDIIERLPTPFGL 66 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhh----CCCCeEEEEecCCCCcce
Confidence 356799999999999999999872 129999999999988763
No 242
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=98.46 E-value=6.6e-07 Score=91.68 Aligned_cols=74 Identities=16% Similarity=0.319 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHcCCEEecCceEEEEEEc-CCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCCCcchHHH
Q 007716 213 QLVRWLGGKAEELGVEIYPGFAASEILYD-ADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKL 291 (592)
Q Consensus 213 ~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~-~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~vr~~l 291 (592)
....+|.....+.|++|++++.|+.|..+ +++++++|.+.+ .++.. .-..+.+|.||+|.|+-.+ -+|
T Consensus 194 ~~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~----~~~~~-----~~~~~~ak~VIlaAGai~T--p~L 262 (296)
T PF00732_consen 194 AATTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVD----NDGGV-----QRRIVAAKEVILAAGAIGT--PRL 262 (296)
T ss_dssp HHHHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEE----TTTSE-----EEEEEEEEEEEE-SHHHHH--HHH
T ss_pred hhhcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeee----cCCcc-----eeeeccceeEEeccCCCCC--hhh
Confidence 34455555544448999999999999775 446888999876 33320 0156789999999997554 344
Q ss_pred HHHcCC
Q 007716 292 IKNFKL 297 (592)
Q Consensus 292 ~~~~~l 297 (592)
+-..|+
T Consensus 263 Ll~SGi 268 (296)
T PF00732_consen 263 LLRSGI 268 (296)
T ss_dssp HHHTTE
T ss_pred hccccc
Confidence 444455
No 243
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=98.45 E-value=4.5e-06 Score=88.78 Aligned_cols=62 Identities=18% Similarity=0.154 Sum_probs=52.0
Q ss_pred EEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCCCc
Q 007716 207 YVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 286 (592)
Q Consensus 207 ~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~ 286 (592)
..++...++..|.+.+++ |++|++++.|++++.++ +. +.|++.+ |..++||.||+|+|.++.
T Consensus 130 g~idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~-~~-~~v~t~~---------------g~~~~a~~vV~a~G~~~~ 191 (381)
T TIGR03197 130 GWLSPPQLCRALLAHAGI-RLTLHFNTEITSLERDG-EG-WQLLDAN---------------GEVIAASVVVLANGAQAG 191 (381)
T ss_pred cccChHHHHHHHHhccCC-CcEEEeCCEEEEEEEcC-Ce-EEEEeCC---------------CCEEEcCEEEEcCCcccc
Confidence 457889999999999998 99999999999998765 33 4677765 556899999999999975
No 244
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=3.2e-07 Score=91.42 Aligned_cols=114 Identities=28% Similarity=0.467 Sum_probs=82.3
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCc
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDK 185 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~ 185 (592)
..|||+||||||||.+||++.+|. |++.-|+-. ..|+. .++.-.++.++
T Consensus 210 ~~yDVLvVGgGPAgaaAAiYaARK------GiRTGl~ae--rfGGQ-----vldT~~IENfI------------------ 258 (520)
T COG3634 210 DAYDVLVVGGGPAGAAAAIYAARK------GIRTGLVAE--RFGGQ-----VLDTMGIENFI------------------ 258 (520)
T ss_pred CCceEEEEcCCcchhHHHHHHHhh------cchhhhhhh--hhCCe-----eccccchhhee------------------
Confidence 469999999999999999999999 999876642 24542 22221111110
Q ss_pred EEEeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcC-CCcEEEEEeccCcccCCCCccc
Q 007716 186 FWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDA-DNKVIGIGTNDMGIAKDGSKKE 264 (592)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~-~g~v~~V~~~d~g~~~~G~~~~ 264 (592)
..|. ....+|...|.+..++..|+|+...+++.++... .+....|++.+
T Consensus 259 ----------sv~~---------teGpkl~~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~n----------- 308 (520)
T COG3634 259 ----------SVPE---------TEGPKLAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELAN----------- 308 (520)
T ss_pred ----------cccc---------ccchHHHHHHHHHHhhcCchhhhhhhhhcceecCCCCccEEEEecC-----------
Confidence 0110 1225889999999999999999988888887732 23455788765
Q ss_pred ccccceEEEcCEEEEecCCC
Q 007716 265 NFQRGVELRGRITLLAEGCR 284 (592)
Q Consensus 265 ~f~~g~~i~a~~vI~A~G~~ 284 (592)
|-.++++-||+|+|++
T Consensus 309 ----GavLkaktvIlstGAr 324 (520)
T COG3634 309 ----GAVLKARTVILATGAR 324 (520)
T ss_pred ----CceeccceEEEecCcc
Confidence 7899999999999986
No 245
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.42 E-value=2.7e-05 Score=86.31 Aligned_cols=78 Identities=18% Similarity=0.253 Sum_probs=60.9
Q ss_pred EEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCCCc
Q 007716 207 YVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 286 (592)
Q Consensus 207 ~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~ 286 (592)
..++...++..|.+.|+++|++|+++++|+++..++ +.+++|++.|. .+|+ ..+++|+.||.|+|.++.
T Consensus 123 g~vdp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~-~~v~gv~v~~~---~~g~-------~~~i~a~~VVnAaG~wa~ 191 (516)
T TIGR03377 123 GTVDPFRLVAANVLDAQEHGARIFTYTKVTGLIREG-GRVTGVKVEDH---KTGE-------EERIEAQVVINAAGIWAG 191 (516)
T ss_pred cEECHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEEC-CEEEEEEEEEc---CCCc-------EEEEEcCEEEECCCcchH
Confidence 468899999999999999999999999999998865 56777776431 1222 257999999999999974
Q ss_pred chHHHHHHcCCC
Q 007716 287 LSEKLIKNFKLR 298 (592)
Q Consensus 287 vr~~l~~~~~l~ 298 (592)
++.+..+++
T Consensus 192 ---~l~~~~g~~ 200 (516)
T TIGR03377 192 ---RIAEYAGLD 200 (516)
T ss_pred ---HHHHhcCCC
Confidence 555555554
No 246
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.42 E-value=3.4e-06 Score=97.83 Aligned_cols=111 Identities=27% Similarity=0.267 Sum_probs=84.4
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcEE
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~~ 187 (592)
-.++|||||+.|+.+|..|++. |.+|+|+|+.+.+-.. .+ .
T Consensus 146 k~vvVIGgG~iGlE~A~~L~~~------G~~VtvVe~~~~ll~~----------~l--------d--------------- 186 (847)
T PRK14989 146 KRGAVVGGGLLGLEAAGALKNL------GVETHVIEFAPMLMAE----------QL--------D--------------- 186 (847)
T ss_pred CeEEEECCCHHHHHHHHHHHHc------CCeEEEEeccccchhh----------hc--------C---------------
Confidence 4699999999999999999999 9999999987632110 00 0
Q ss_pred EeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccc
Q 007716 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (592)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~ 267 (592)
......+.+.+++.||++++++.++++..++++.+..|.+.|
T Consensus 187 ------------------------~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~d-------------- 228 (847)
T PRK14989 187 ------------------------QMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFAD-------------- 228 (847)
T ss_pred ------------------------HHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECC--------------
Confidence 244566777888899999999999999765434455566654
Q ss_pred cceEEEcCEEEEecCCCCcchHHHHHHcCCC
Q 007716 268 RGVELRGRITLLAEGCRGSLSEKLIKNFKLR 298 (592)
Q Consensus 268 ~g~~i~a~~vI~A~G~~s~vr~~l~~~~~l~ 298 (592)
|.++.+|.||+|.|.++.. .+.+..++.
T Consensus 229 -G~~i~~D~Vv~A~G~rPn~--~L~~~~Gl~ 256 (847)
T PRK14989 229 -GSELEVDFIVFSTGIRPQD--KLATQCGLA 256 (847)
T ss_pred -CCEEEcCEEEECCCcccCc--hHHhhcCcc
Confidence 6789999999999999874 355556654
No 247
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.42 E-value=1.5e-06 Score=92.35 Aligned_cols=110 Identities=16% Similarity=0.254 Sum_probs=71.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcE
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~ 186 (592)
..+|||||||+||+++|..|.+. .++.+|+||++.+.... +.-.+ + ..+..
T Consensus 2 ~~~vvIiG~G~AG~~~a~~lr~~----~~~~~Itvi~~~~~~~y---~~~~l-~----~~~~~----------------- 52 (377)
T PRK04965 2 SNGIVIIGSGFAARQLVKNIRKQ----DAHIPITLITADSGDEY---NKPDL-S----HVFSQ----------------- 52 (377)
T ss_pred CCCEEEECCcHHHHHHHHHHHhh----CcCCCEEEEeCCCCCCc---CcCcC-c----HHHhC-----------------
Confidence 35899999999999999999875 45789999998764211 00000 0 00000
Q ss_pred EEeecCCcccCCCCCCCCCcEEEcHHHHHH-HHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccc
Q 007716 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVR-WLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKEN 265 (592)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~-~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~ 265 (592)
.....++.. ...+.+++.|++++.+++|+++..++ . .|.+.
T Consensus 53 ---------------------~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~-~---~v~~~------------- 94 (377)
T PRK04965 53 ---------------------GQRADDLTRQSAGEFAEQFNLRLFPHTWVTDIDAEA-Q---VVKSQ------------- 94 (377)
T ss_pred ---------------------CCCHHHhhcCCHHHHHHhCCCEEECCCEEEEEECCC-C---EEEEC-------------
Confidence 001123322 13344566899999999999987654 2 24443
Q ss_pred cccceEEEcCEEEEecCCCCc
Q 007716 266 FQRGVELRGRITLLAEGCRGS 286 (592)
Q Consensus 266 f~~g~~i~a~~vI~A~G~~s~ 286 (592)
+.++.+|.+|+|+|+.+.
T Consensus 95 ---~~~~~yd~LVlATG~~~~ 112 (377)
T PRK04965 95 ---GNQWQYDKLVLATGASAF 112 (377)
T ss_pred ---CeEEeCCEEEECCCCCCC
Confidence 368999999999998764
No 248
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.42 E-value=1.1e-06 Score=95.30 Aligned_cols=37 Identities=22% Similarity=0.523 Sum_probs=32.3
Q ss_pred cEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCC
Q 007716 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVG 149 (592)
Q Consensus 109 DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g 149 (592)
+|||||||+||+++|..|++. .++.+|+|+|+.+..+
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~----~~~~~I~li~~~~~~~ 39 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRL----DKESDIIIFEKDRDMS 39 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhh----CCCCCEEEEECCCCcc
Confidence 699999999999999999875 4578999999987544
No 249
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.41 E-value=7.8e-07 Score=102.81 Aligned_cols=39 Identities=38% Similarity=0.518 Sum_probs=35.7
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCC
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGA 150 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~ 150 (592)
...||+|||||||||+||..|++. |++|+|+|+.+.+|+
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~------G~~V~v~e~~~~~GG 468 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKR------GYDVTVFEALHEIGG 468 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC------CCeEEEEecCCCCCC
Confidence 357999999999999999999999 999999999877765
No 250
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.41 E-value=4e-05 Score=81.75 Aligned_cols=40 Identities=40% Similarity=0.639 Sum_probs=35.7
Q ss_pred cEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcc
Q 007716 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI 152 (592)
Q Consensus 109 DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~ 152 (592)
.|+|||||++||+||++|+|. +|.+.|+|+|+++.+||-.
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~----~p~~~i~lfE~~~r~GG~l 41 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKA----GPDVEVTLFEADDRVGGLL 41 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHh----CCCCcEEEEecCCCCCceE
Confidence 489999999999999999998 3349999999999998865
No 251
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.40 E-value=1.7e-06 Score=91.24 Aligned_cols=37 Identities=30% Similarity=0.289 Sum_probs=33.4
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCC
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVG 149 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g 149 (592)
..||+|||||++|+++|+.|++. |++|+|+|+++...
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~------Gl~V~LiE~rp~~~ 38 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKR------GVPVELYEMRPVKK 38 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhC------CCcEEEEEccCccC
Confidence 35899999999999999999999 99999999877553
No 252
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=98.39 E-value=5.9e-06 Score=90.67 Aligned_cols=37 Identities=41% Similarity=0.530 Sum_probs=35.0
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCC
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGA 150 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~ 150 (592)
|||+|||+||+|+++|..|++. |++|+|||++...|+
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~------g~~v~~~e~~~~~~~ 37 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDA------GLKVAMVEIGAADSF 37 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHC------CCeEEEEeccCccCC
Confidence 6999999999999999999998 999999999998874
No 253
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=98.38 E-value=2.7e-06 Score=84.00 Aligned_cols=163 Identities=22% Similarity=0.373 Sum_probs=100.9
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCccc--------ccCccChHHHH--------Hh-hH
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII--------SGNVFEPRALN--------EL-LP 168 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~--------~g~~i~~~~l~--------~l-l~ 168 (592)
..||+||||||+.|++.|..|.-+ .|+++|.|+||...++.|.. +|....|..|+ +| +.
T Consensus 47 ~~~D~VvvGgGiVGlAsARel~lr----hp~l~V~vleke~~la~hqSghNSgViHaGIYY~P~SLKAklCV~G~~LlY~ 122 (453)
T KOG2665|consen 47 ERYDLVVVGGGIVGLASARELSLR----HPSLKVAVLEKEKSLAVHQSGHNSGVIHAGIYYKPGSLKAKLCVEGRELLYE 122 (453)
T ss_pred ccccEEEECCceeehhhhHHHhhc----CCCceEEeeehhhhhceeecccccceeeeeeeeCCcccchhhhhccHHHHHH
Confidence 579999999999999999999865 57999999999987765532 12222344332 22 11
Q ss_pred hhhhcCCCee------eeccCCcE------------------EEeecCCcccCC------CCCCCCCcEEEcHHHHHHHH
Q 007716 169 QWKQEEAPIR------VPVSSDKF------------------WFLTKDRAFSLP------SPFSNRGNYVISLSQLVRWL 218 (592)
Q Consensus 169 ~~~~~~~~~~------~~~~~~~~------------------~~~~~~~~~~~~------~~~~~~~~~~v~~~~l~~~L 218 (592)
-..+...|.. ..+..+.+ ..+......++. .........+++.+.+...+
T Consensus 123 yc~e~~IpyKk~GKLIVAt~~~EiprLd~L~~~g~qN~v~glrmieg~ei~~~EP~crgvkAl~sPhtGIvD~~~v~ls~ 202 (453)
T KOG2665|consen 123 YCDEKKIPYKKTGKLIVATESEEIPRLDALMHRGTQNGVPGLRMIEGSEIMEMEPYCRGVKALLSPHTGIVDWGSVTLSF 202 (453)
T ss_pred HhhhcCCChhhcceEEEEeChhhcchHHHHHHhhhhcCCCCeeeeccchhhhcChhhhhhhhhcCCCcceeehHHHHHHH
Confidence 1222222111 11111111 111111111111 11222335678899999999
Q ss_pred HHHHHHcCCEEecCceEEEEEEcCCCcE--EEEEeccCcccCCCCcccccccceEEEcCEEEEecCCCCc
Q 007716 219 GGKAEELGVEIYPGFAASEILYDADNKV--IGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 286 (592)
Q Consensus 219 ~~~a~~~Gv~i~~g~~v~~i~~~~~g~v--~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~ 286 (592)
.+..+..|-+++++.++..+..+.++.. -.|..+ | .|.+++.+++|-|+|-.|.
T Consensus 203 ~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~n-------g-------k~ee~r~~~~vtc~gl~sd 258 (453)
T KOG2665|consen 203 GEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLN-------G-------KGEEKRTKNVVTCAGLQSD 258 (453)
T ss_pred HHHHHHhcccccccceeccchhccCCCCCCceEEec-------C-------ccceeEEeEEEEeccccHh
Confidence 9999999999999999999987765411 012222 2 2589999999999998876
No 254
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.38 E-value=1.3e-06 Score=95.22 Aligned_cols=39 Identities=38% Similarity=0.624 Sum_probs=35.7
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCC
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGA 150 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~ 150 (592)
...+|+||||||+|+++|..|++. |++|+|+|+.+.+|+
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~------g~~V~lie~~~~~gG 177 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARK------GYDVTIFEARDKAGG 177 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhC------CCeEEEEccCCCCCc
Confidence 457999999999999999999998 999999999887765
No 255
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.37 E-value=5.3e-06 Score=88.73 Aligned_cols=108 Identities=27% Similarity=0.330 Sum_probs=81.1
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcEE
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~~ 187 (592)
-+|+|||||+.|+.+|..|++. |.+|+|+|+.+.+.... +
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~------g~~Vtlv~~~~~~l~~~--------------~-------------------- 184 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQR------RCKVTVIELAATVMGRN--------------A-------------------- 184 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHc------CCeEEEEecCCcchhhh--------------c--------------------
Confidence 5799999999999999999998 99999999876432200 0
Q ss_pred EeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccc
Q 007716 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (592)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~ 267 (592)
...+...+.+.+++.||++++++.++++.. + +.+ .|.+.+
T Consensus 185 -----------------------~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~-~-~~~-~v~l~~-------------- 224 (396)
T PRK09754 185 -----------------------PPPVQRYLLQRHQQAGVRILLNNAIEHVVD-G-EKV-ELTLQS-------------- 224 (396)
T ss_pred -----------------------CHHHHHHHHHHHHHCCCEEEeCCeeEEEEc-C-CEE-EEEECC--------------
Confidence 024556677777889999999999999865 2 323 466654
Q ss_pred cceEEEcCEEEEecCCCCcchHHHHHHcCCC
Q 007716 268 RGVELRGRITLLAEGCRGSLSEKLIKNFKLR 298 (592)
Q Consensus 268 ~g~~i~a~~vI~A~G~~s~vr~~l~~~~~l~ 298 (592)
|.++.+|.||+|.|..+.. .+.+..++.
T Consensus 225 -g~~i~aD~Vv~a~G~~pn~--~l~~~~gl~ 252 (396)
T PRK09754 225 -GETLQADVVIYGIGISAND--QLAREANLD 252 (396)
T ss_pred -CCEEECCEEEECCCCChhh--HHHHhcCCC
Confidence 5789999999999998763 354445554
No 256
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.37 E-value=4.9e-06 Score=88.42 Aligned_cols=109 Identities=22% Similarity=0.284 Sum_probs=81.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcEE
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~~ 187 (592)
.+|+|||||+.|+.+|..|++. |.+|+++|+.+.+... .+
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~------g~~Vtlv~~~~~~l~~--------------~~-------------------- 181 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRA------GKAVTLVDNAASLLAS--------------LM-------------------- 181 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhc------CCeEEEEecCCcccch--------------hC--------------------
Confidence 5799999999999999999998 9999999987643210 00
Q ss_pred EeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccc
Q 007716 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (592)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~ 267 (592)
+ ..+...+.+.+++.||++++++.++++..+++ .+.|.+.+
T Consensus 182 ----------~-------------~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~--~~~v~~~~-------------- 222 (377)
T PRK04965 182 ----------P-------------PEVSSRLQHRLTEMGVHLLLKSQLQGLEKTDS--GIRATLDS-------------- 222 (377)
T ss_pred ----------C-------------HHHHHHHHHHHHhCCCEEEECCeEEEEEccCC--EEEEEEcC--------------
Confidence 0 24455667777889999999999999876542 23466554
Q ss_pred cceEEEcCEEEEecCCCCcchHHHHHHcCCC
Q 007716 268 RGVELRGRITLLAEGCRGSLSEKLIKNFKLR 298 (592)
Q Consensus 268 ~g~~i~a~~vI~A~G~~s~vr~~l~~~~~l~ 298 (592)
|.++.+|.||+|+|..+.. .+.+..++.
T Consensus 223 -g~~i~~D~vI~a~G~~p~~--~l~~~~gl~ 250 (377)
T PRK04965 223 -GRSIEVDAVIAAAGLRPNT--ALARRAGLA 250 (377)
T ss_pred -CcEEECCEEEECcCCCcch--HHHHHCCCC
Confidence 6789999999999998753 344445554
No 257
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.36 E-value=6.6e-07 Score=105.62 Aligned_cols=38 Identities=42% Similarity=0.531 Sum_probs=35.4
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCC
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGA 150 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~ 150 (592)
..+|+|||||||||++|+.|++. |++|+|+|+...+|+
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~------G~~VtV~E~~~~~GG 467 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKY------GVDVTVYEALHVVGG 467 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc------CCcEEEEecCCCCcc
Confidence 57999999999999999999999 999999999887775
No 258
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.34 E-value=2e-06 Score=91.93 Aligned_cols=110 Identities=18% Similarity=0.238 Sum_probs=68.9
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcEE
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~~ 187 (592)
.+|||||||+||++||..|++. ++..+|+|+++........ -.+. + .++ ...
T Consensus 4 ~~vvIIGgG~AG~~aA~~Lr~~----~~~~~I~li~~e~~~~y~r---~~l~-~---~~~----~~~------------- 55 (396)
T PRK09754 4 KTIIIVGGGQAAAMAAASLRQQ----GFTGELHLFSDERHLPYER---PPLS-K---SML----LED------------- 55 (396)
T ss_pred CcEEEECChHHHHHHHHHHHhh----CCCCCEEEeCCCCCCCCCC---CCCC-H---HHH----CCC-------------
Confidence 5799999999999999999997 2244899999876543200 0000 0 000 000
Q ss_pred EeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccc
Q 007716 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (592)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~ 267 (592)
. ... ..... .+...+.||+++.++.|+.+..++ . .|.+.+
T Consensus 56 ----~-----~~~-----~~~~~--------~~~~~~~~i~~~~g~~V~~id~~~-~---~v~~~~-------------- 95 (396)
T PRK09754 56 ----S-----PQL-----QQVLP--------ANWWQENNVHLHSGVTIKTLGRDT-R---ELVLTN-------------- 95 (396)
T ss_pred ----C-----ccc-----cccCC--------HHHHHHCCCEEEcCCEEEEEECCC-C---EEEECC--------------
Confidence 0 000 00000 112234789999999998887654 2 255544
Q ss_pred cceEEEcCEEEEecCCCCc
Q 007716 268 RGVELRGRITLLAEGCRGS 286 (592)
Q Consensus 268 ~g~~i~a~~vI~A~G~~s~ 286 (592)
|.++.+|.+|+|||+++.
T Consensus 96 -g~~~~yd~LViATGs~~~ 113 (396)
T PRK09754 96 -GESWHWDQLFIATGAAAR 113 (396)
T ss_pred -CCEEEcCEEEEccCCCCC
Confidence 568999999999999864
No 259
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.33 E-value=1.7e-06 Score=98.40 Aligned_cols=39 Identities=38% Similarity=0.593 Sum_probs=36.0
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCC
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGA 150 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~ 150 (592)
...+|+|||||||||++|..|++. |++|+|+|+.+.+|+
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~------G~~V~V~E~~~~~GG 364 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARN------GVAVTVYDRHPEIGG 364 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC------CCeEEEEecCCCCCc
Confidence 357999999999999999999999 999999999888776
No 260
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.31 E-value=7.3e-06 Score=89.79 Aligned_cols=104 Identities=24% Similarity=0.310 Sum_probs=76.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcE
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~ 186 (592)
.-+|+|||||++|+.+|..|++. |.+|+|+|+.+.+... +
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~------g~~Vtli~~~~~il~~------------------~---------------- 219 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADF------GVEVTVVEAADRILPT------------------E---------------- 219 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc------CCeEEEEEecCccCCc------------------C----------------
Confidence 35799999999999999999998 9999999987643210 0
Q ss_pred EEeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCccccc
Q 007716 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (592)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f 266 (592)
...+.+.+.+.+++.||++++++.|+++..+.++.+..+.+.+ |+
T Consensus 220 ------------------------~~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~------g~----- 264 (472)
T PRK05976 220 ------------------------DAELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHN------GE----- 264 (472)
T ss_pred ------------------------CHHHHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeC------Cc-----
Confidence 0245556677778889999999999998752123343343332 22
Q ss_pred ccceEEEcCEEEEecCCCCcc
Q 007716 267 QRGVELRGRITLLAEGCRGSL 287 (592)
Q Consensus 267 ~~g~~i~a~~vI~A~G~~s~v 287 (592)
..++.+|.||+|+|..+.+
T Consensus 265 --~~~i~~D~vi~a~G~~p~~ 283 (472)
T PRK05976 265 --EKTLEADKVLVSVGRRPNT 283 (472)
T ss_pred --eEEEEeCEEEEeeCCccCC
Confidence 1579999999999998764
No 261
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=98.31 E-value=2.5e-06 Score=93.16 Aligned_cols=39 Identities=36% Similarity=0.618 Sum_probs=35.9
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCC
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGA 150 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~ 150 (592)
...+|+||||||+|+++|..|++. |++|+|+|+.+.+|+
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~------G~~V~i~e~~~~~gG 178 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARA------GVQVVVFDRHPEIGG 178 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHc------CCeEEEEecCCCCCc
Confidence 457899999999999999999998 999999999987776
No 262
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.29 E-value=3.7e-06 Score=88.28 Aligned_cols=101 Identities=31% Similarity=0.483 Sum_probs=76.1
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcC-------CCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeee
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKN-------VDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRV 179 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~-------~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~ 179 (592)
..+|+|||||+.|..+|..|+....+-. ..++|+|+|+++.+-. .+.
T Consensus 155 ~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp------------------~~~-------- 208 (405)
T COG1252 155 LLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILP------------------MFP-------- 208 (405)
T ss_pred eeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhcc------------------CCC--------
Confidence 3579999999999999999987644211 1469999998875432 111
Q ss_pred eccCCcEEEeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCC
Q 007716 180 PVSSDKFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKD 259 (592)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~ 259 (592)
.++.....+.+++.||+|+.++.|+++..+ +|++.+
T Consensus 209 --------------------------------~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~------~v~~~~------ 244 (405)
T COG1252 209 --------------------------------PKLSKYAERALEKLGVEVLLGTPVTEVTPD------GVTLKD------ 244 (405)
T ss_pred --------------------------------HHHHHHHHHHHHHCCCEEEcCCceEEECCC------cEEEcc------
Confidence 356666777788899999999999998654 266654
Q ss_pred CCcccccccce-EEEcCEEEEecCCCCc
Q 007716 260 GSKKENFQRGV-ELRGRITLLAEGCRGS 286 (592)
Q Consensus 260 G~~~~~f~~g~-~i~a~~vI~A~G~~s~ 286 (592)
|. +|.++.+|-|+|.+.+
T Consensus 245 ---------g~~~I~~~tvvWaaGv~a~ 263 (405)
T COG1252 245 ---------GEEEIPADTVVWAAGVRAS 263 (405)
T ss_pred ---------CCeeEecCEEEEcCCCcCC
Confidence 33 6999999999999875
No 263
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.28 E-value=6.4e-06 Score=89.98 Aligned_cols=103 Identities=19% Similarity=0.240 Sum_probs=77.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcE
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~ 186 (592)
..+|+|||||++|+.+|..|++. |.+|+|+|+.+.+... +
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~------g~~Vtli~~~~~~l~~------------------~---------------- 209 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASL------GSKVTVIEMLDRILPG------------------E---------------- 209 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc------CCcEEEEEcCCCCCCC------------------C----------------
Confidence 35799999999999999999998 9999999987643210 0
Q ss_pred EEeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCccccc
Q 007716 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (592)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f 266 (592)
...+...+.+.+++.||++++++.|.++..++ +.+ .+.+.+ |+
T Consensus 210 ------------------------~~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~-~~v-~v~~~~------g~----- 252 (461)
T TIGR01350 210 ------------------------DAEVSKVVAKALKKKGVKILTNTKVTAVEKND-DQV-VYENKG------GE----- 252 (461)
T ss_pred ------------------------CHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeC-CEE-EEEEeC------Cc-----
Confidence 02455566777888999999999999997765 333 244432 21
Q ss_pred ccceEEEcCEEEEecCCCCcch
Q 007716 267 QRGVELRGRITLLAEGCRGSLS 288 (592)
Q Consensus 267 ~~g~~i~a~~vI~A~G~~s~vr 288 (592)
..++.+|.||+|+|..+.+.
T Consensus 253 --~~~i~~D~vi~a~G~~p~~~ 272 (461)
T TIGR01350 253 --TETLTGEKVLVAVGRKPNTE 272 (461)
T ss_pred --EEEEEeCEEEEecCCcccCC
Confidence 15799999999999988754
No 264
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.28 E-value=3.6e-06 Score=88.90 Aligned_cols=108 Identities=18% Similarity=0.112 Sum_probs=71.9
Q ss_pred cEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcEEE
Q 007716 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFWF 188 (592)
Q Consensus 109 DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~ 188 (592)
+|||||||+||+.+|..|++.. .++.+|+|||+....-. . + .++.+..
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~---~~~~~I~li~~~~~~~~---~-----~-----~~~~~~~---------------- 48 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKP---LPGVRVTLINPSSTTPY---S-----G-----MLPGMIA---------------- 48 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcC---CCCCEEEEECCCCCCcc---c-----c-----hhhHHHh----------------
Confidence 4899999999999999986531 24789999998764211 0 0 0111100
Q ss_pred eecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCccccccc
Q 007716 189 LTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQR 268 (592)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~ 268 (592)
-.+...++...+.+.+++.||+++.+ .|++++.+++ .|.+.+
T Consensus 49 ------------------g~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~id~~~~----~V~~~~--------------- 90 (364)
T TIGR03169 49 ------------------GHYSLDEIRIDLRRLARQAGARFVIA-EATGIDPDRR----KVLLAN--------------- 90 (364)
T ss_pred ------------------eeCCHHHhcccHHHHHHhcCCEEEEE-EEEEEecccC----EEEECC---------------
Confidence 00111334444556667789999876 7888877652 366654
Q ss_pred ceEEEcCEEEEecCCCCc
Q 007716 269 GVELRGRITLLAEGCRGS 286 (592)
Q Consensus 269 g~~i~a~~vI~A~G~~s~ 286 (592)
|.++.+|++|+|+|+...
T Consensus 91 g~~~~yD~LviAtG~~~~ 108 (364)
T TIGR03169 91 RPPLSYDVLSLDVGSTTP 108 (364)
T ss_pred CCcccccEEEEccCCCCC
Confidence 567999999999998764
No 265
>PRK06116 glutathione reductase; Validated
Probab=98.27 E-value=9.6e-06 Score=88.28 Aligned_cols=101 Identities=19% Similarity=0.196 Sum_probs=78.3
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcE
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~ 186 (592)
.-.|+|||||+.|+.+|..|++. |.+|+++++++.+.. .+.
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~------g~~Vtlv~~~~~~l~------------------~~~--------------- 207 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGL------GSETHLFVRGDAPLR------------------GFD--------------- 207 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc------CCeEEEEecCCCCcc------------------ccC---------------
Confidence 35799999999999999999998 999999998764311 000
Q ss_pred EEeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCccccc
Q 007716 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (592)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f 266 (592)
.++.+.+.+.+++.||++++++.|.++..++++.+ .|.+.+
T Consensus 208 -------------------------~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~-~v~~~~------------- 248 (450)
T PRK06116 208 -------------------------PDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSL-TLTLED------------- 248 (450)
T ss_pred -------------------------HHHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceE-EEEEcC-------------
Confidence 24556677778889999999999999987654433 455544
Q ss_pred ccceEEEcCEEEEecCCCCcc
Q 007716 267 QRGVELRGRITLLAEGCRGSL 287 (592)
Q Consensus 267 ~~g~~i~a~~vI~A~G~~s~v 287 (592)
|.++.+|.||+|+|..+.+
T Consensus 249 --g~~i~~D~Vv~a~G~~p~~ 267 (450)
T PRK06116 249 --GETLTVDCLIWAIGREPNT 267 (450)
T ss_pred --CcEEEeCEEEEeeCCCcCC
Confidence 5689999999999987653
No 266
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.27 E-value=1.3e-05 Score=93.01 Aligned_cols=109 Identities=24% Similarity=0.327 Sum_probs=82.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcEE
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~~ 187 (592)
..|+|||||+.|+.+|..|++. |.+|+|+|+.+.+-.. . +.
T Consensus 141 k~vvVVGgG~~GlE~A~~L~~~------G~~Vtvv~~~~~ll~~----------~-------ld---------------- 181 (785)
T TIGR02374 141 KKAAVIGGGLLGLEAAVGLQNL------GMDVSVIHHAPGLMAK----------Q-------LD---------------- 181 (785)
T ss_pred CeEEEECCCHHHHHHHHHHHhc------CCeEEEEccCCchhhh----------h-------cC----------------
Confidence 4699999999999999999999 9999999986532110 0 00
Q ss_pred EeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccc
Q 007716 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (592)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~ 267 (592)
..+...+.+.+++.||++++++.++++..+ +.+.+|.+.|
T Consensus 182 ------------------------~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~--~~~~~v~~~d-------------- 221 (785)
T TIGR02374 182 ------------------------QTAGRLLQRELEQKGLTFLLEKDTVEIVGA--TKADRIRFKD-------------- 221 (785)
T ss_pred ------------------------HHHHHHHHHHHHHcCCEEEeCCceEEEEcC--CceEEEEECC--------------
Confidence 234555677778899999999999988653 3455677765
Q ss_pred cceEEEcCEEEEecCCCCcchHHHHHHcCCC
Q 007716 268 RGVELRGRITLLAEGCRGSLSEKLIKNFKLR 298 (592)
Q Consensus 268 ~g~~i~a~~vI~A~G~~s~vr~~l~~~~~l~ 298 (592)
|.++.+|.||+|.|.++.. .+.+..++.
T Consensus 222 -G~~i~~D~Vi~a~G~~Pn~--~la~~~gl~ 249 (785)
T TIGR02374 222 -GSSLEADLIVMAAGIRPND--ELAVSAGIK 249 (785)
T ss_pred -CCEEEcCEEEECCCCCcCc--HHHHhcCCc
Confidence 6789999999999998864 354455554
No 267
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=9e-06 Score=81.04 Aligned_cols=54 Identities=20% Similarity=0.431 Sum_probs=46.0
Q ss_pred cccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCC--------CCCCcccccCccChHHHH
Q 007716 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA--------EVGAHIISGNVFEPRALN 164 (592)
Q Consensus 105 ~~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~--------~~g~~~~~g~~i~~~~l~ 164 (592)
..+||.+|||||.+||++|-++++. |.+|.++|--. .+|++|++.+||+.+-|.
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~~------G~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMH 78 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAADL------GAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMH 78 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHhc------CCcEEEEeecccCCCCCccccCceeeecccccHHHHH
Confidence 3589999999999999999999999 99999999321 257888899999987653
No 268
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=98.26 E-value=2.9e-06 Score=96.28 Aligned_cols=39 Identities=36% Similarity=0.563 Sum_probs=35.9
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCC
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGA 150 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~ 150 (592)
...+|+|||||||||++|+.|++. |++|+|+|+.+.+|+
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~------G~~Vtv~e~~~~~GG 230 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRK------GHDVTIFDANEQAGG 230 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC------CCcEEEEecCCCCCc
Confidence 347899999999999999999999 999999999988776
No 269
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=98.26 E-value=2.8e-06 Score=89.39 Aligned_cols=38 Identities=47% Similarity=0.579 Sum_probs=35.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCC
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGA 150 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~ 150 (592)
..+|+|||||++|+++|..|++. |.+|+|+|+.+.+++
T Consensus 18 ~~~VvIIG~G~aGl~aA~~l~~~------g~~v~lie~~~~~gg 55 (352)
T PRK12770 18 GKKVAIIGAGPAGLAAAGYLACL------GYEVHVYDKLPEPGG 55 (352)
T ss_pred CCEEEEECcCHHHHHHHHHHHHC------CCcEEEEeCCCCCCc
Confidence 46899999999999999999998 999999999887765
No 270
>PRK06370 mercuric reductase; Validated
Probab=98.25 E-value=1.1e-05 Score=88.03 Aligned_cols=103 Identities=21% Similarity=0.315 Sum_probs=76.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcE
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~ 186 (592)
.-+|+|||||+.|+.+|..|++. |.+|+|+|+.+.+... .+
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~------G~~Vtli~~~~~~l~~------~~--------------------------- 211 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRF------GSEVTVIERGPRLLPR------ED--------------------------- 211 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc------CCeEEEEEcCCCCCcc------cC---------------------------
Confidence 35799999999999999999998 9999999987653210 00
Q ss_pred EEeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCccccc
Q 007716 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (592)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f 266 (592)
.++.+.+.+.+++.||++++++.|.++..++++. .|.+.. ++
T Consensus 212 -------------------------~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~--~v~~~~-----~~------ 253 (463)
T PRK06370 212 -------------------------EDVAAAVREILEREGIDVRLNAECIRVERDGDGI--AVGLDC-----NG------ 253 (463)
T ss_pred -------------------------HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEE--EEEEEe-----CC------
Confidence 2445566777788999999999999998765332 233221 01
Q ss_pred ccceEEEcCEEEEecCCCCcc
Q 007716 267 QRGVELRGRITLLAEGCRGSL 287 (592)
Q Consensus 267 ~~g~~i~a~~vI~A~G~~s~v 287 (592)
++.++.+|.||+|+|..+..
T Consensus 254 -~~~~i~~D~Vi~A~G~~pn~ 273 (463)
T PRK06370 254 -GAPEITGSHILVAVGRVPNT 273 (463)
T ss_pred -CceEEEeCEEEECcCCCcCC
Confidence 13679999999999988864
No 271
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=98.25 E-value=1.9e-05 Score=82.72 Aligned_cols=42 Identities=38% Similarity=0.531 Sum_probs=36.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCccc
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII 153 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~ 153 (592)
...|||||||.|||+||.+|-+. ....|+|+|..+.+||++.
T Consensus 21 ~~kIvIIGAG~AGLaAA~rLle~-----gf~~~~IlEa~dRIGGRI~ 62 (498)
T KOG0685|consen 21 NAKIVIIGAGIAGLAAATRLLEN-----GFIDVLILEASDRIGGRIH 62 (498)
T ss_pred CceEEEECCchHHHHHHHHHHHh-----CCceEEEEEeccccCceEe
Confidence 35799999999999999999966 1668999999999998763
No 272
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.25 E-value=1e-05 Score=88.46 Aligned_cols=100 Identities=19% Similarity=0.263 Sum_probs=77.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcE
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~ 186 (592)
...|+|||||+.|+.+|..|++. |.+|+|+|+.+.+... ++
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~------g~~Vtli~~~~~~l~~------~d--------------------------- 215 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAAL------GVKVTLINTRDRLLSF------LD--------------------------- 215 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc------CCeEEEEecCCCcCCc------CC---------------------------
Confidence 35799999999999999999999 9999999987643210 00
Q ss_pred EEeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCccccc
Q 007716 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (592)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f 266 (592)
.++...|.+.+++.||++++++.++++..++++ + .+.+.+
T Consensus 216 -------------------------~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~-~-~v~~~~------------- 255 (461)
T PRK05249 216 -------------------------DEISDALSYHLRDSGVTIRHNEEVEKVEGGDDG-V-IVHLKS------------- 255 (461)
T ss_pred -------------------------HHHHHHHHHHHHHcCCEEEECCEEEEEEEeCCe-E-EEEECC-------------
Confidence 245566777778889999999999999865533 3 344443
Q ss_pred ccceEEEcCEEEEecCCCCcc
Q 007716 267 QRGVELRGRITLLAEGCRGSL 287 (592)
Q Consensus 267 ~~g~~i~a~~vI~A~G~~s~v 287 (592)
|.++.+|.||+|+|.++..
T Consensus 256 --g~~i~~D~vi~a~G~~p~~ 274 (461)
T PRK05249 256 --GKKIKADCLLYANGRTGNT 274 (461)
T ss_pred --CCEEEeCEEEEeecCCccc
Confidence 4679999999999998864
No 273
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.23 E-value=6.5e-06 Score=81.94 Aligned_cols=59 Identities=25% Similarity=0.286 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCC
Q 007716 212 SQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCR 284 (592)
Q Consensus 212 ~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~ 284 (592)
-++...|..+.++.|+-++.|-+|.+..... ++|.+|.+.+. . ...++||..|.|+|..
T Consensus 258 iRl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~-~~v~~i~trn~------~-------diP~~a~~~VLAsGsf 316 (421)
T COG3075 258 IRLHNQLQRQFEQLGGLWMPGDEVKKATCKG-GRVTEIYTRNH------A-------DIPLRADFYVLASGSF 316 (421)
T ss_pred hhHHHHHHHHHHHcCceEecCCceeeeeeeC-CeEEEEEeccc------c-------cCCCChhHeeeecccc
Confidence 4677888888999999999999999998887 78888888752 1 2678999999999964
No 274
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.22 E-value=1.5e-05 Score=86.62 Aligned_cols=100 Identities=21% Similarity=0.150 Sum_probs=77.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcEE
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~~ 187 (592)
-.|+|||||..|+.+|..|++. |.+|+|+|+.+.+... +.
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~------g~~Vtli~~~~~il~~------------------~d---------------- 206 (450)
T TIGR01421 167 KRVVIVGAGYIAVELAGVLHGL------GSETHLVIRHERVLRS------------------FD---------------- 206 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHc------CCcEEEEecCCCCCcc------------------cC----------------
Confidence 5799999999999999999998 9999999988653210 00
Q ss_pred EeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccc
Q 007716 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (592)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~ 267 (592)
..+.+.+.+.+++.||++++++.++++..++++.+ .|.+.+
T Consensus 207 ------------------------~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~-~v~~~~-------------- 247 (450)
T TIGR01421 207 ------------------------SMISETITEEYEKEGINVHKLSKPVKVEKTVEGKL-VIHFED-------------- 247 (450)
T ss_pred ------------------------HHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceE-EEEECC--------------
Confidence 24556677778889999999999999986543422 455543
Q ss_pred cc-eEEEcCEEEEecCCCCcc
Q 007716 268 RG-VELRGRITLLAEGCRGSL 287 (592)
Q Consensus 268 ~g-~~i~a~~vI~A~G~~s~v 287 (592)
| .++.+|.||.|.|..+..
T Consensus 248 -g~~~i~~D~vi~a~G~~pn~ 267 (450)
T TIGR01421 248 -GKSIDDVDELIWAIGRKPNT 267 (450)
T ss_pred -CcEEEEcCEEEEeeCCCcCc
Confidence 3 579999999999988763
No 275
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.22 E-value=1.4e-05 Score=87.26 Aligned_cols=102 Identities=16% Similarity=0.230 Sum_probs=75.8
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcEE
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~~ 187 (592)
-+|+|||||++|+.+|..|++. |.+|+|+|+.+.+... +.
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~------g~~Vtli~~~~~~l~~------------------~d---------------- 206 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARL------GSEVTILQRSDRLLPR------------------EE---------------- 206 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHc------CCcEEEEEcCCcCCCc------------------cC----------------
Confidence 5799999999999999999998 9999999987643210 00
Q ss_pred EeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccc
Q 007716 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (592)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~ 267 (592)
.++...+.+.+++.||++++++.|+++..++++ ..|.+.+ +|.
T Consensus 207 ------------------------~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~--~~v~~~~-----~~~------ 249 (463)
T TIGR02053 207 ------------------------PEISAAVEEALAEEGIEVVTSAQVKAVSVRGGG--KIITVEK-----PGG------ 249 (463)
T ss_pred ------------------------HHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCE--EEEEEEe-----CCC------
Confidence 234455667777889999999999999775432 2344422 111
Q ss_pred cceEEEcCEEEEecCCCCcc
Q 007716 268 RGVELRGRITLLAEGCRGSL 287 (592)
Q Consensus 268 ~g~~i~a~~vI~A~G~~s~v 287 (592)
+.++.+|.||+|+|..+..
T Consensus 250 -~~~i~~D~ViiA~G~~p~~ 268 (463)
T TIGR02053 250 -QGEVEADELLVATGRRPNT 268 (463)
T ss_pred -ceEEEeCEEEEeECCCcCC
Confidence 3689999999999988764
No 276
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.22 E-value=5.8e-06 Score=95.95 Aligned_cols=111 Identities=18% Similarity=0.190 Sum_probs=72.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcEE
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~~ 187 (592)
.+|||||+|+||+.+|..|.+.. ..++.+|+||++.+.+.... + .+...+..
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~--~~~~~~Itvi~~e~~~~Y~r----~----~L~~~~~~------------------ 55 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKA--DAANFDITVFCEEPRIAYDR----V----HLSSYFSH------------------ 55 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhC--CCCCCeEEEEECCCCCcccC----C----cchHhHcC------------------
Confidence 47999999999999999998651 11368999999987654210 0 01000000
Q ss_pred EeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccc
Q 007716 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (592)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~ 267 (592)
. ...++.....+..++.||+++.+++|+.+..+. . .|.+.+
T Consensus 56 -----~----------------~~~~l~~~~~~~~~~~gI~~~~g~~V~~Id~~~--~--~V~~~~-------------- 96 (847)
T PRK14989 56 -----H----------------TAEELSLVREGFYEKHGIKVLVGERAITINRQE--K--VIHSSA-------------- 96 (847)
T ss_pred -----C----------------CHHHccCCCHHHHHhCCCEEEcCCEEEEEeCCC--c--EEEECC--------------
Confidence 0 001222222334455799999999998887653 2 255554
Q ss_pred cceEEEcCEEEEecCCCCc
Q 007716 268 RGVELRGRITLLAEGCRGS 286 (592)
Q Consensus 268 ~g~~i~a~~vI~A~G~~s~ 286 (592)
|.++.+|.+|+|||+++.
T Consensus 97 -G~~i~yD~LVIATGs~p~ 114 (847)
T PRK14989 97 -GRTVFYDKLIMATGSYPW 114 (847)
T ss_pred -CcEEECCEEEECCCCCcC
Confidence 578999999999998864
No 277
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.22 E-value=1.6e-05 Score=84.45 Aligned_cols=37 Identities=32% Similarity=0.344 Sum_probs=33.4
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCC
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGA 150 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~ 150 (592)
.||+|||||++|+.+|+.|++. |++|+|+|+++..+.
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~------G~~V~LiE~rp~~~~ 37 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQA------GVPVILYEMRPEKLT 37 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhC------CCcEEEEeccccccC
Confidence 3799999999999999999999 999999998876544
No 278
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.20 E-value=1.5e-05 Score=86.45 Aligned_cols=98 Identities=20% Similarity=0.187 Sum_probs=74.8
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcEE
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~~ 187 (592)
-.|+|||||++|+.+|..|++. |.+|+|+|+.+.+... .
T Consensus 158 ~~vvIIGgG~~g~e~A~~l~~~------g~~Vtli~~~~~~l~~------------------~----------------- 196 (438)
T PRK07251 158 ERLGIIGGGNIGLEFAGLYNKL------GSKVTVLDAASTILPR------------------E----------------- 196 (438)
T ss_pred CeEEEECCCHHHHHHHHHHHHc------CCeEEEEecCCccCCC------------------C-----------------
Confidence 4799999999999999999998 9999999987643210 0
Q ss_pred EeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccc
Q 007716 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (592)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~ 267 (592)
...+...+.+.+++.||++++++.|+++..++ +.+ .+...
T Consensus 197 -----------------------~~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~-~~v-~v~~~--------------- 236 (438)
T PRK07251 197 -----------------------EPSVAALAKQYMEEDGITFLLNAHTTEVKNDG-DQV-LVVTE--------------- 236 (438)
T ss_pred -----------------------CHHHHHHHHHHHHHcCCEEEcCCEEEEEEecC-CEE-EEEEC---------------
Confidence 02344556677778899999999999997654 333 23322
Q ss_pred cceEEEcCEEEEecCCCCcc
Q 007716 268 RGVELRGRITLLAEGCRGSL 287 (592)
Q Consensus 268 ~g~~i~a~~vI~A~G~~s~v 287 (592)
|.++.+|.||+|+|..+.+
T Consensus 237 -g~~i~~D~viva~G~~p~~ 255 (438)
T PRK07251 237 -DETYRFDALLYATGRKPNT 255 (438)
T ss_pred -CeEEEcCEEEEeeCCCCCc
Confidence 4689999999999998864
No 279
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.20 E-value=1.4e-05 Score=87.25 Aligned_cols=102 Identities=22% Similarity=0.288 Sum_probs=76.8
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcEE
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~~ 187 (592)
-+|+|||||+.|+.+|..|++. |.+|+++|+.+.+... ++
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~------g~~Vtli~~~~~~l~~------~~---------------------------- 212 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASL------GAEVTIVEALPRILPG------ED---------------------------- 212 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHc------CCeEEEEEcCCCcCCc------CC----------------------------
Confidence 5799999999999999999998 9999999987643210 00
Q ss_pred EeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccc
Q 007716 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (592)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~ 267 (592)
..+...+.+.+++.||++++++.|+++..+++ .+ .+.+.+ +|+
T Consensus 213 ------------------------~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~-~v-~v~~~~-----gg~------ 255 (462)
T PRK06416 213 ------------------------KEISKLAERALKKRGIKIKTGAKAKKVEQTDD-GV-TVTLED-----GGK------ 255 (462)
T ss_pred ------------------------HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCC-EE-EEEEEe-----CCe------
Confidence 24455667777888999999999999987653 23 344433 011
Q ss_pred cceEEEcCEEEEecCCCCcc
Q 007716 268 RGVELRGRITLLAEGCRGSL 287 (592)
Q Consensus 268 ~g~~i~a~~vI~A~G~~s~v 287 (592)
..++.+|.||+|+|..+..
T Consensus 256 -~~~i~~D~vi~a~G~~p~~ 274 (462)
T PRK06416 256 -EETLEADYVLVAVGRRPNT 274 (462)
T ss_pred -eEEEEeCEEEEeeCCccCC
Confidence 1579999999999998764
No 280
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.18 E-value=1.4e-05 Score=87.35 Aligned_cols=103 Identities=27% Similarity=0.345 Sum_probs=76.4
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcEE
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~~ 187 (592)
-+|+|||||+.|+.+|..|++. |.+|+|+|+.+.+.. .+.
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~------G~~Vtlv~~~~~~l~------------------~~d---------------- 212 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNY------GVDVTIVEFLDRALP------------------NED---------------- 212 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHc------CCeEEEEecCCCcCC------------------ccC----------------
Confidence 4799999999999999999998 999999998764321 000
Q ss_pred EeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccc
Q 007716 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (592)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~ 267 (592)
.++...+.+.+++.||+|++++.|+++..++ +.+ .|.+.. .+|+
T Consensus 213 ------------------------~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~-~~~-~v~~~~----~~g~------ 256 (466)
T PRK07818 213 ------------------------AEVSKEIAKQYKKLGVKILTGTKVESIDDNG-SKV-TVTVSK----KDGK------ 256 (466)
T ss_pred ------------------------HHHHHHHHHHHHHCCCEEEECCEEEEEEEeC-CeE-EEEEEe----cCCC------
Confidence 2455567777788999999999999997654 322 344331 1232
Q ss_pred cceEEEcCEEEEecCCCCcc
Q 007716 268 RGVELRGRITLLAEGCRGSL 287 (592)
Q Consensus 268 ~g~~i~a~~vI~A~G~~s~v 287 (592)
..++.+|.||+|+|..+.+
T Consensus 257 -~~~i~~D~vi~a~G~~pn~ 275 (466)
T PRK07818 257 -AQELEADKVLQAIGFAPRV 275 (466)
T ss_pred -eEEEEeCEEEECcCcccCC
Confidence 1579999999999988874
No 281
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.16 E-value=5.4e-06 Score=96.02 Aligned_cols=109 Identities=21% Similarity=0.243 Sum_probs=71.3
Q ss_pred EEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcEEEe
Q 007716 110 VVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFWFL 189 (592)
Q Consensus 110 VvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~ 189 (592)
|||||||+||+++|..|.+.. .++.+|+|||+.+.++.... .+..++..
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~---~~~~~Itvi~~e~~~~y~r~--------~L~~~l~g-------------------- 49 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLN---RHMFEITIFGEEPHPNYNRI--------LLSSVLQG-------------------- 49 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcC---CCCCeEEEEeCCCCCCcccc--------cccHHHCC--------------------
Confidence 689999999999999998761 13689999999886542100 00000000
Q ss_pred ecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccc
Q 007716 190 TKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRG 269 (592)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g 269 (592)
. .+..++.....+.+++.||+++.+++|+.|..+. . .|.+.+ |
T Consensus 50 --~----------------~~~~~l~~~~~~~~~~~gv~~~~g~~V~~Id~~~-k---~V~~~~---------------g 92 (785)
T TIGR02374 50 --E----------------ADLDDITLNSKDWYEKHGITLYTGETVIQIDTDQ-K---QVITDA---------------G 92 (785)
T ss_pred --C----------------CCHHHccCCCHHHHHHCCCEEEcCCeEEEEECCC-C---EEEECC---------------C
Confidence 0 0011221112334456899999999999987654 2 355554 5
Q ss_pred eEEEcCEEEEecCCCCc
Q 007716 270 VELRGRITLLAEGCRGS 286 (592)
Q Consensus 270 ~~i~a~~vI~A~G~~s~ 286 (592)
.++.+|.+|+|+|+.+.
T Consensus 93 ~~~~yD~LVlATGs~p~ 109 (785)
T TIGR02374 93 RTLSYDKLILATGSYPF 109 (785)
T ss_pred cEeeCCEEEECCCCCcC
Confidence 78999999999998764
No 282
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.16 E-value=7.8e-06 Score=83.98 Aligned_cols=152 Identities=20% Similarity=0.288 Sum_probs=95.6
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcc---cccCccChHHHHHhhHhhhhcCCCeeeecc
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI---ISGNVFEPRALNELLPQWKQEEAPIRVPVS 182 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~---~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~ 182 (592)
..+|+|.||-||+-|++|+.|... .+.+++.+||.+....|. +.|..++...+..|. ....|
T Consensus 4 ~~~DliGIG~GPfNL~LA~ll~e~-----~~~~~lFLerkp~F~WHpGmllegstlQv~FlkDLV----Tl~~P------ 68 (436)
T COG3486 4 EVLDLIGIGIGPFNLSLAALLEEH-----SGLKSLFLERKPDFSWHPGMLLEGSTLQVPFLKDLV----TLVDP------ 68 (436)
T ss_pred cceeeEEEccCchHHHHHHHhccc-----cCcceEEEecCCCCCcCCCcccCCccccccchhhhc----cccCC------
Confidence 469999999999999999999987 258899999999876542 223323222222221 00000
Q ss_pred CCcEEEe---ecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEE--EEeccCccc
Q 007716 183 SDKFWFL---TKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIG--IGTNDMGIA 257 (592)
Q Consensus 183 ~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~--V~~~d~g~~ 257 (592)
...+.|+ .....+ ..+-+...+.+.|.+..+++.-.|... -.+++|..|++|..-+.+.+.. |.+.+
T Consensus 69 Ts~ySFLNYL~~h~RL---y~Fl~~e~f~i~R~Ey~dY~~Waa~~l-~~~rfg~~V~~i~~~~~d~~~~~~~~t~~---- 140 (436)
T COG3486 69 TSPYSFLNYLHEHGRL---YEFLNYETFHIPRREYNDYCQWAASQL-PSLRFGEEVTDISSLDGDAVVRLFVVTAN---- 140 (436)
T ss_pred CCchHHHHHHHHcchH---hhhhhhhcccccHHHHHHHHHHHHhhC-CccccCCeeccccccCCcceeEEEEEcCC----
Confidence 0011111 111110 112334467789999999988888877 6799999999773322122222 44443
Q ss_pred CCCCcccccccceEEEcCEEEEecCCCCcchHHH
Q 007716 258 KDGSKKENFQRGVELRGRITLLAEGCRGSLSEKL 291 (592)
Q Consensus 258 ~~G~~~~~f~~g~~i~a~~vI~A~G~~s~vr~~l 291 (592)
+..++|+.||+++|..+.+-..+
T Consensus 141 -----------~~~y~ar~lVlg~G~~P~IP~~f 163 (436)
T COG3486 141 -----------GTVYRARNLVLGVGTQPYIPPCF 163 (436)
T ss_pred -----------CcEEEeeeEEEccCCCcCCChHH
Confidence 46899999999999988765543
No 283
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.16 E-value=2.1e-05 Score=85.51 Aligned_cols=108 Identities=21% Similarity=0.340 Sum_probs=79.9
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcEE
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~~ 187 (592)
-.|+|||||++|+.+|..|++. |.+|+++++.+.+... .+
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~------g~~Vtli~~~~~~l~~-----------------~~----------------- 189 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHL------GKNVRIIQLEDRILPD-----------------SF----------------- 189 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhc------CCcEEEEeCCcccCch-----------------hc-----------------
Confidence 5799999999999999999998 9999999976532110 00
Q ss_pred EeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccc
Q 007716 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (592)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~ 267 (592)
...+.+.+.+.+++.||+++++++++++..+ +.+..+.+.+
T Consensus 190 -----------------------~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~--~~~~~v~~~~-------------- 230 (444)
T PRK09564 190 -----------------------DKEITDVMEEELRENGVELHLNEFVKSLIGE--DKVEGVVTDK-------------- 230 (444)
T ss_pred -----------------------CHHHHHHHHHHHHHCCCEEEcCCEEEEEecC--CcEEEEEeCC--------------
Confidence 0356667788888899999999999998543 4454555543
Q ss_pred cceEEEcCEEEEecCCCCcchHHHHHHcCCC
Q 007716 268 RGVELRGRITLLAEGCRGSLSEKLIKNFKLR 298 (592)
Q Consensus 268 ~g~~i~a~~vI~A~G~~s~vr~~l~~~~~l~ 298 (592)
.++.+|.||+|+|..+.. .+++..+++
T Consensus 231 --~~i~~d~vi~a~G~~p~~--~~l~~~gl~ 257 (444)
T PRK09564 231 --GEYEADVVIVATGVKPNT--EFLEDTGLK 257 (444)
T ss_pred --CEEEcCEEEECcCCCcCH--HHHHhcCcc
Confidence 479999999999988752 334445543
No 284
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.16 E-value=5.3e-05 Score=75.55 Aligned_cols=40 Identities=38% Similarity=0.618 Sum_probs=35.1
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCC--CCCc
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAE--VGAH 151 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~--~g~~ 151 (592)
.++||+|||||.|||.||..|+.. |.+|+|+|+..+ +|+.
T Consensus 4 ~~~dvivvgaglaglvaa~elA~a------G~~V~ildQEgeqnlGGQ 45 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADA------GKRVLILDQEGEQNLGGQ 45 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhc------CceEEEEcccccccccce
Confidence 479999999999999999999999 999999998654 4443
No 285
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.15 E-value=2.6e-05 Score=85.23 Aligned_cols=105 Identities=23% Similarity=0.272 Sum_probs=76.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcE
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~ 186 (592)
.-.|+|||||+.|+.+|..|++. |.+|+|+|+.+.+... ++
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~------G~~Vtlie~~~~il~~------~d--------------------------- 214 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRL------GAQVTVVEYLDRICPG------TD--------------------------- 214 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc------CCeEEEEeCCCCCCCC------CC---------------------------
Confidence 35799999999999999999998 9999999987643210 00
Q ss_pred EEeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCccccc
Q 007716 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (592)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f 266 (592)
.++...+.+.+++.||++++++.++++..++++ + .+.+.+ ..+|+
T Consensus 215 -------------------------~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~-v-~v~~~~---~~~g~----- 259 (466)
T PRK06115 215 -------------------------TETAKTLQKALTKQGMKFKLGSKVTGATAGADG-V-SLTLEP---AAGGA----- 259 (466)
T ss_pred -------------------------HHHHHHHHHHHHhcCCEEEECcEEEEEEEcCCe-E-EEEEEE---cCCCc-----
Confidence 244556777778889999999999999765433 2 233221 01122
Q ss_pred ccceEEEcCEEEEecCCCCcc
Q 007716 267 QRGVELRGRITLLAEGCRGSL 287 (592)
Q Consensus 267 ~~g~~i~a~~vI~A~G~~s~v 287 (592)
+.++.+|.||+|+|..+.+
T Consensus 260 --~~~i~~D~vi~a~G~~pn~ 278 (466)
T PRK06115 260 --AETLQADYVLVAIGRRPYT 278 (466)
T ss_pred --eeEEEeCEEEEccCCcccc
Confidence 3679999999999988764
No 286
>PTZ00188 adrenodoxin reductase; Provisional
Probab=98.15 E-value=5.8e-06 Score=88.68 Aligned_cols=39 Identities=28% Similarity=0.353 Sum_probs=34.2
Q ss_pred cccEEEECCCHHHHHHHHHHH-HhhhhcCCCCcEEEEcCCCCCCCc
Q 007716 107 AYDVVIVGAGPAGLSAAIRLK-QLCREKNVDLSVCVVEKGAEVGAH 151 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La-~~~~~~~~g~~V~vlEk~~~~g~~ 151 (592)
...|+||||||||+.||..|. +. |++|+|+||.+.+||-
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~------g~~VtlfEk~p~pgGL 78 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHE------RVKVDIFEKLPNPYGL 78 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhc------CCeEEEEecCCCCccE
Confidence 457999999999999999765 55 9999999999998874
No 287
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.14 E-value=2.8e-05 Score=84.78 Aligned_cols=100 Identities=23% Similarity=0.260 Sum_probs=74.9
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcEE
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~~ 187 (592)
-+|+|||||++|+.+|..|++. |.+|+|+|+.+.+... +
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~------g~~Vtli~~~~~ll~~------------------~----------------- 209 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRL------GTKVTIVEMAPQLLPG------------------E----------------- 209 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHc------CCeEEEEecCCCcCcc------------------c-----------------
Confidence 4799999999999999999998 9999999987643210 0
Q ss_pred EeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccc
Q 007716 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (592)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~ 267 (592)
-.++.+.+.+.+++.||++++++.++++..++ ..+ .+.. + |+
T Consensus 210 -----------------------d~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~-~~v-~~~~-~------g~------ 251 (458)
T PRK06912 210 -----------------------DEDIAHILREKLENDGVKIFTGAALKGLNSYK-KQA-LFEY-E------GS------ 251 (458)
T ss_pred -----------------------cHHHHHHHHHHHHHCCCEEEECCEEEEEEEcC-CEE-EEEE-C------Cc------
Confidence 02455667777888999999999999987654 222 2322 1 21
Q ss_pred cceEEEcCEEEEecCCCCcc
Q 007716 268 RGVELRGRITLLAEGCRGSL 287 (592)
Q Consensus 268 ~g~~i~a~~vI~A~G~~s~v 287 (592)
..++.+|.||+|+|..+.+
T Consensus 252 -~~~i~~D~vivA~G~~p~~ 270 (458)
T PRK06912 252 -IQEVNAEFVLVSVGRKPRV 270 (458)
T ss_pred -eEEEEeCEEEEecCCccCC
Confidence 1479999999999988874
No 288
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=98.13 E-value=2e-05 Score=82.64 Aligned_cols=103 Identities=24% Similarity=0.280 Sum_probs=85.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcE
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~ 186 (592)
.-.|++||+|..|+.+|..|.-. +++|+++++.+.+-. .++
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~------~~~VT~V~~e~~~~~--------------~lf------------------- 253 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSK------AKSVTVVFPEPWLLP--------------RLF------------------- 253 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhc------CceEEEEccCccchh--------------hhh-------------------
Confidence 45699999999999999999988 999999998763210 000
Q ss_pred EEeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCccccc
Q 007716 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (592)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f 266 (592)
...+.+.+.+..++.||+++.++.+.++..+.+|++..|.+.|
T Consensus 254 ------------------------~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~d------------- 296 (478)
T KOG1336|consen 254 ------------------------GPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKD------------- 296 (478)
T ss_pred ------------------------hHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEecc-------------
Confidence 0356666777788899999999999999999999999999887
Q ss_pred ccceEEEcCEEEEecCCCCcc
Q 007716 267 QRGVELRGRITLLAEGCRGSL 287 (592)
Q Consensus 267 ~~g~~i~a~~vI~A~G~~s~v 287 (592)
|.++.||+||...|+.+.+
T Consensus 297 --g~~l~adlvv~GiG~~p~t 315 (478)
T KOG1336|consen 297 --GKTLEADLVVVGIGIKPNT 315 (478)
T ss_pred --CCEeccCeEEEeecccccc
Confidence 7899999999999998763
No 289
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.13 E-value=2.5e-05 Score=84.96 Aligned_cols=99 Identities=19% Similarity=0.305 Sum_probs=75.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcE
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~ 186 (592)
.-.|+|||||+.|+.+|..|++. |.+|+|+|+.+.+.. .+.
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~~------G~~Vtli~~~~~~l~------------------~~d--------------- 206 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRGL------GVQVTLIYRGELILR------------------GFD--------------- 206 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHHc------CCeEEEEEeCCCCCc------------------ccC---------------
Confidence 34699999999999999999998 999999998764311 000
Q ss_pred EEeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCccccc
Q 007716 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (592)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f 266 (592)
.++...+.+.+++.||++++++.+.++..++++ + .|.+.+
T Consensus 207 -------------------------~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~-~-~v~~~~------------- 246 (446)
T TIGR01424 207 -------------------------DDMRALLARNMEGRGIRIHPQTSLTSITKTDDG-L-KVTLSH------------- 246 (446)
T ss_pred -------------------------HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCe-E-EEEEcC-------------
Confidence 244555677778889999999999999865544 2 355443
Q ss_pred ccceEEEcCEEEEecCCCCc
Q 007716 267 QRGVELRGRITLLAEGCRGS 286 (592)
Q Consensus 267 ~~g~~i~a~~vI~A~G~~s~ 286 (592)
|.++.+|.||+|+|..+.
T Consensus 247 --g~~i~~D~viva~G~~pn 264 (446)
T TIGR01424 247 --GEEIVADVVLFATGRSPN 264 (446)
T ss_pred --CcEeecCEEEEeeCCCcC
Confidence 568999999999998765
No 290
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.13 E-value=7.6e-06 Score=92.82 Aligned_cols=39 Identities=36% Similarity=0.582 Sum_probs=36.0
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCC
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGA 150 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~ 150 (592)
...+|+||||||+||++|..|++. |++|+|+|+.+.+|+
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~------G~~Vtv~e~~~~~GG 347 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARA------GVQVDVFDRHPEIGG 347 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHc------CCcEEEEeCCCCCCC
Confidence 357899999999999999999998 999999999988776
No 291
>PTZ00058 glutathione reductase; Provisional
Probab=98.12 E-value=2.2e-05 Score=87.10 Aligned_cols=102 Identities=13% Similarity=0.124 Sum_probs=76.1
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcE
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~ 186 (592)
.-.|+|||||..|+.+|..|++. |.+|+|+|+++.+.. .+.
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~------G~~Vtli~~~~~il~------------------~~d--------------- 277 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRL------GAESYIFARGNRLLR------------------KFD--------------- 277 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHc------CCcEEEEEecccccc------------------cCC---------------
Confidence 35799999999999999999999 999999998764321 000
Q ss_pred EEeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCccccc
Q 007716 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (592)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f 266 (592)
.++.+.+.+.+++.||+++++..+.++..++++.+ .+...+
T Consensus 278 -------------------------~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v-~v~~~~------------- 318 (561)
T PTZ00058 278 -------------------------ETIINELENDMKKNNINIITHANVEEIEKVKEKNL-TIYLSD------------- 318 (561)
T ss_pred -------------------------HHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcE-EEEECC-------------
Confidence 24455667777888999999999999986543333 233322
Q ss_pred ccceEEEcCEEEEecCCCCcc
Q 007716 267 QRGVELRGRITLLAEGCRGSL 287 (592)
Q Consensus 267 ~~g~~i~a~~vI~A~G~~s~v 287 (592)
.+.++.+|.||+|+|..+.+
T Consensus 319 -~~~~i~aD~VlvA~Gr~Pn~ 338 (561)
T PTZ00058 319 -GRKYEHFDYVIYCVGRSPNT 338 (561)
T ss_pred -CCEEEECCEEEECcCCCCCc
Confidence 13579999999999987763
No 292
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.12 E-value=2.6e-06 Score=92.70 Aligned_cols=41 Identities=41% Similarity=0.628 Sum_probs=38.7
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcc
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI 152 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~ 152 (592)
...+|||||||+|||+||..|.+. |++|+|+|.++.+||++
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~~------G~~V~VLEARdRvGGRI 54 (501)
T KOG0029|consen 14 KKKKVIVIGAGLAGLSAARQLQDF------GFDVLVLEARDRVGGRI 54 (501)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHc------CCceEEEeccCCcCcee
Confidence 468999999999999999999999 99999999999999876
No 293
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.10 E-value=1.2e-05 Score=86.89 Aligned_cols=117 Identities=16% Similarity=0.200 Sum_probs=71.1
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcE
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~ 186 (592)
..+|||||||.||+.+|..|.+. +.+|+|||+.+..--. -+++.+..
T Consensus 10 ~~~vVIvGgG~aGl~~a~~L~~~------~~~ItlI~~~~~~~~~-------------~~l~~~~~-------------- 56 (424)
T PTZ00318 10 KPNVVVLGTGWAGAYFVRNLDPK------KYNITVISPRNHMLFT-------------PLLPQTTT-------------- 56 (424)
T ss_pred CCeEEEECCCHHHHHHHHHhCcC------CCeEEEEcCCCCcchh-------------hhHHHhcc--------------
Confidence 46899999999999999988765 7899999987642110 01111100
Q ss_pred EEeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCccccc
Q 007716 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (592)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f 266 (592)
. ......+..-+.+.++..|++++.+ +|++|+.++ ..| .+.+.+ .+.. .-
T Consensus 57 ----g----------------~~~~~~~~~~~~~~~~~~~~~~i~~-~V~~Id~~~-~~v-~~~~~~----~~~~---~~ 106 (424)
T PTZ00318 57 ----G----------------TLEFRSICEPVRPALAKLPNRYLRA-VVYDVDFEE-KRV-KCGVVS----KSNN---AN 106 (424)
T ss_pred ----c----------------CCChHHhHHHHHHHhccCCeEEEEE-EEEEEEcCC-CEE-EEeccc----cccc---cc
Confidence 0 0111234444666666678887754 788887765 322 232211 0000 00
Q ss_pred ccceEEEcCEEEEecCCCCc
Q 007716 267 QRGVELRGRITLLAEGCRGS 286 (592)
Q Consensus 267 ~~g~~i~a~~vI~A~G~~s~ 286 (592)
++|.++.+|++|+|+|+...
T Consensus 107 ~~g~~i~yD~LViAtGs~~~ 126 (424)
T PTZ00318 107 VNTFSVPYDKLVVAHGARPN 126 (424)
T ss_pred CCceEecCCEEEECCCcccC
Confidence 12568999999999999853
No 294
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=98.10 E-value=2.2e-05 Score=83.93 Aligned_cols=102 Identities=26% Similarity=0.427 Sum_probs=80.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcE
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~ 186 (592)
..+|+|||+|++|+.+|..|++. |++|+++|+.+.+++...
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~------G~~v~l~e~~~~~~~~~~--------------------------------- 176 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKR------GKKVTLIEAADRLGGQLL--------------------------------- 176 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHc------CCeEEEEEcccccchhhh---------------------------------
Confidence 46899999999999999999999 999999999987765210
Q ss_pred EEeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEE-EEeccCcccCCCCcccc
Q 007716 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIG-IGTNDMGIAKDGSKKEN 265 (592)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~-V~~~d~g~~~~G~~~~~ 265 (592)
. ..+...+.+..++.||++++++.+.+++...+..... +...+
T Consensus 177 -----------------------~-~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~------------ 220 (415)
T COG0446 177 -----------------------D-PEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGID------------ 220 (415)
T ss_pred -----------------------h-HHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeC------------
Confidence 0 2556677888888999999999999998776332211 23332
Q ss_pred cccceEEEcCEEEEecCCCCc
Q 007716 266 FQRGVELRGRITLLAEGCRGS 286 (592)
Q Consensus 266 f~~g~~i~a~~vI~A~G~~s~ 286 (592)
+.++.+|.++.+.|.++.
T Consensus 221 ---~~~~~~d~~~~~~g~~p~ 238 (415)
T COG0446 221 ---GEEIKADLVIIGPGERPN 238 (415)
T ss_pred ---CcEEEeeEEEEeeccccc
Confidence 578999999999999985
No 295
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.10 E-value=3.5e-05 Score=84.23 Aligned_cols=99 Identities=20% Similarity=0.249 Sum_probs=76.8
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcEE
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~~ 187 (592)
-.|+|||+|..|+.+|..|++. |.+|+++|+.+.+... .+
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~------g~~Vtli~~~~~~l~~------~d---------------------------- 217 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTEL------GVKVTLVSSRDRVLPG------ED---------------------------- 217 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHc------CCeEEEEEcCCcCCCC------CC----------------------------
Confidence 4799999999999999999998 9999999987643220 00
Q ss_pred EeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccc
Q 007716 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (592)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~ 267 (592)
..+...+.+.+++.||++++++.+.++..++++ + .|.+.+
T Consensus 218 ------------------------~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~-~-~v~~~~-------------- 257 (466)
T PRK07845 218 ------------------------ADAAEVLEEVFARRGMTVLKRSRAESVERTGDG-V-VVTLTD-------------- 257 (466)
T ss_pred ------------------------HHHHHHHHHHHHHCCcEEEcCCEEEEEEEeCCE-E-EEEECC--------------
Confidence 234556677778899999999999999765533 3 355443
Q ss_pred cceEEEcCEEEEecCCCCcc
Q 007716 268 RGVELRGRITLLAEGCRGSL 287 (592)
Q Consensus 268 ~g~~i~a~~vI~A~G~~s~v 287 (592)
|.++.+|.||+|+|..+..
T Consensus 258 -g~~l~~D~vl~a~G~~pn~ 276 (466)
T PRK07845 258 -GRTVEGSHALMAVGSVPNT 276 (466)
T ss_pred -CcEEEecEEEEeecCCcCC
Confidence 5689999999999998874
No 296
>PLN02507 glutathione reductase
Probab=98.10 E-value=3.3e-05 Score=85.08 Aligned_cols=100 Identities=15% Similarity=0.212 Sum_probs=77.1
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcE
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~ 186 (592)
.-+|+|||||+.|+.+|..|++. |.+|+|+++.+.+-.. ++
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~------G~~Vtli~~~~~~l~~------~d--------------------------- 243 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGM------GATVDLFFRKELPLRG------FD--------------------------- 243 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHc------CCeEEEEEecCCcCcc------cC---------------------------
Confidence 35799999999999999999998 9999999987632110 00
Q ss_pred EEeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCccccc
Q 007716 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (592)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f 266 (592)
.++.+.+.+.+++.||+++.++.|+++..++++ + .|.+.+
T Consensus 244 -------------------------~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~-~-~v~~~~------------- 283 (499)
T PLN02507 244 -------------------------DEMRAVVARNLEGRGINLHPRTNLTQLTKTEGG-I-KVITDH------------- 283 (499)
T ss_pred -------------------------HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCe-E-EEEECC-------------
Confidence 245566777778889999999999999865433 3 355443
Q ss_pred ccceEEEcCEEEEecCCCCcc
Q 007716 267 QRGVELRGRITLLAEGCRGSL 287 (592)
Q Consensus 267 ~~g~~i~a~~vI~A~G~~s~v 287 (592)
|.++.+|.||.|.|..+..
T Consensus 284 --g~~i~~D~vl~a~G~~pn~ 302 (499)
T PLN02507 284 --GEEFVADVVLFATGRAPNT 302 (499)
T ss_pred --CcEEEcCEEEEeecCCCCC
Confidence 5689999999999998874
No 297
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=98.08 E-value=9.5e-06 Score=90.82 Aligned_cols=39 Identities=38% Similarity=0.727 Sum_probs=35.7
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCC
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGA 150 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~ 150 (592)
...+|+||||||+||++|..|++. |++|+|+|+.+.+|+
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~------G~~V~v~e~~~~~GG 174 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRM------GHAVTIFEAGPKLGG 174 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC------CCeEEEEecCCCCCC
Confidence 346899999999999999999998 999999999988776
No 298
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=98.06 E-value=5.7e-06 Score=85.86 Aligned_cols=144 Identities=19% Similarity=0.252 Sum_probs=78.6
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCC-CCCccc--ccCccChHHH-------HHhhHhhhhcCC
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAE-VGAHII--SGNVFEPRAL-------NELLPQWKQEEA 175 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~-~g~~~~--~g~~i~~~~l-------~~ll~~~~~~~~ 175 (592)
..|||||||||-||..||.+.+|. |.+.+++-.+-. +|.... +-|.+....| +-+.....+.
T Consensus 27 ~~~dVvVIGgGHAG~EAAaAaaR~------Ga~TlLlT~~ld~Ig~msCNPsfGGigKg~LmrEVDALdGl~~rvcD~-- 98 (679)
T KOG2311|consen 27 STYDVVVIGGGHAGCEAAAAAARL------GARTLLLTHNLDTIGEMSCNPSFGGIGKGHLMREVDALDGLCSRVCDQ-- 98 (679)
T ss_pred CcccEEEECCCccchHHHHHHHhc------CCceEEeecccccccccccCcccCCcccceeeeeehhhcchHhhhhhh--
Confidence 479999999999999999999999 999999987643 443221 1122322222 1111111100
Q ss_pred CeeeeccCCcEEEeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHH-cCCEEecCceEEEEEEcCCC----cEEEEE
Q 007716 176 PIRVPVSSDKFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEE-LGVEIYPGFAASEILYDADN----KVIGIG 250 (592)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~-~Gv~i~~g~~v~~i~~~~~g----~v~~V~ 250 (592)
..-.+..++...+-.+ -.....++|...-..|.+.+.. .+.+|+.+ +|.++...+.+ .+.||.
T Consensus 99 ------s~vq~k~LNrs~GPAV-----wg~RAQiDR~lYkk~MQkei~st~nL~ire~-~V~dliv~~~~~~~~~~~gV~ 166 (679)
T KOG2311|consen 99 ------SGVQYKVLNRSKGPAV-----WGLRAQIDRKLYKKNMQKEISSTPNLEIREG-AVADLIVEDPDDGHCVVSGVV 166 (679)
T ss_pred ------hhhhHHHhhccCCCcc-----cChHHhhhHHHHHHHHHHHhccCCcchhhhh-hhhheeeccCCCCceEEEEEE
Confidence 0000111111000000 0001123344444444444332 24677766 46666554322 377888
Q ss_pred eccCcccCCCCcccccccceEEEcCEEEEecCCC
Q 007716 251 TNDMGIAKDGSKKENFQRGVELRGRITLLAEGCR 284 (592)
Q Consensus 251 ~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~ 284 (592)
+.| |+.+.|+.||+.||..
T Consensus 167 l~d---------------gt~v~a~~VilTTGTF 185 (679)
T KOG2311|consen 167 LVD---------------GTVVYAESVILTTGTF 185 (679)
T ss_pred Eec---------------CcEeccceEEEeeccc
Confidence 876 7899999999999964
No 299
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.06 E-value=3.5e-05 Score=83.26 Aligned_cols=107 Identities=17% Similarity=0.265 Sum_probs=78.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcEE
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~~ 187 (592)
-+|+|||||++|+.+|..|++. |.+|+++++.+.+... .+
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~------g~~Vtli~~~~~~~~~-----------------~~----------------- 177 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRER------GKNVTLIHRSERILNK-----------------LF----------------- 177 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhC------CCcEEEEECCcccCcc-----------------cc-----------------
Confidence 4799999999999999999998 9999999987643110 00
Q ss_pred EeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccc
Q 007716 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (592)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~ 267 (592)
+ ..+...+.+.+++.||++++++.+.++..+ +.+ +.+.+
T Consensus 178 ----------------------~-~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~--~~~--v~~~~-------------- 216 (427)
T TIGR03385 178 ----------------------D-EEMNQIVEEELKKHEINLRLNEEVDSIEGE--ERV--KVFTS-------------- 216 (427)
T ss_pred ----------------------C-HHHHHHHHHHHHHcCCEEEeCCEEEEEecC--CCE--EEEcC--------------
Confidence 0 245556777778899999999999998654 333 34433
Q ss_pred cceEEEcCEEEEecCCCCcchHHHHHHcCCC
Q 007716 268 RGVELRGRITLLAEGCRGSLSEKLIKNFKLR 298 (592)
Q Consensus 268 ~g~~i~a~~vI~A~G~~s~vr~~l~~~~~l~ 298 (592)
|.++.+|.||.|+|.++.. .+.+..++.
T Consensus 217 -g~~i~~D~vi~a~G~~p~~--~~l~~~gl~ 244 (427)
T TIGR03385 217 -GGVYQADMVILATGIKPNS--ELAKDSGLK 244 (427)
T ss_pred -CCEEEeCEEEECCCccCCH--HHHHhcCcc
Confidence 4689999999999998763 334444443
No 300
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.06 E-value=3e-05 Score=81.78 Aligned_cols=158 Identities=20% Similarity=0.263 Sum_probs=80.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcE-
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF- 186 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~- 186 (592)
++|+|||+|++|+.+|.+|.+..+. ...|.|+|+....|... ..++..=..++ ...........+...+.|
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~---~~~Isi~e~~~~~G~Gi----aYs~~~p~~~l-Nv~a~~mS~~~pD~p~~F~ 73 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRP---SGLISIFEPRPNFGQGI----AYSTEEPEHLL-NVPAARMSAFAPDIPQDFV 73 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCC---CCceEEeccccccCCCc----cCCCCCchhhh-ccccccccccCCCCchHHH
Confidence 6899999999999999999987322 23399999999877532 11111000000 000000000000000111
Q ss_pred EEeecC-CcccCCCCCCCCCcEEEcHHHHHHHHHHHHHH---cC----CEEecCceEEEEEEcCCCcEEEEEeccCcccC
Q 007716 187 WFLTKD-RAFSLPSPFSNRGNYVISLSQLVRWLGGKAEE---LG----VEIYPGFAASEILYDADNKVIGIGTNDMGIAK 258 (592)
Q Consensus 187 ~~~~~~-~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~---~G----v~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~ 258 (592)
.|+... .....+....+.+.....|..+-++|.++... .+ +.. ...+++++..++++...-|.+.+
T Consensus 74 ~WL~~~~~~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~-~~~~a~~~~~~~n~~~~~~~~~~----- 147 (474)
T COG4529 74 RWLQKQLQRYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRT-IREEATSVRQDTNAGGYLVTTAD----- 147 (474)
T ss_pred HHHHhcccccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeE-EeeeeecceeccCCceEEEecCC-----
Confidence 112111 01111111222233344565666666655432 12 322 34456666666445555566665
Q ss_pred CCCcccccccceEEEcCEEEEecCCCCcchH
Q 007716 259 DGSKKENFQRGVELRGRITLLAEGCRGSLSE 289 (592)
Q Consensus 259 ~G~~~~~f~~g~~i~a~~vI~A~G~~s~vr~ 289 (592)
|....||.+|+|||.-.....
T Consensus 148 ----------g~~~~ad~~Vlatgh~~~~~~ 168 (474)
T COG4529 148 ----------GPSEIADIIVLATGHSAPPAD 168 (474)
T ss_pred ----------CCeeeeeEEEEeccCCCCCcc
Confidence 678899999999997655433
No 301
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.06 E-value=4.9e-05 Score=83.31 Aligned_cols=103 Identities=20% Similarity=0.247 Sum_probs=77.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcEE
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~~ 187 (592)
-.|+|||||+.|+.+|..|++. |.+|+|+|+.+.+... .+
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~~------g~~Vtli~~~~~~l~~------~d---------------------------- 223 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRRL------GAEVTILEALPAFLAA------AD---------------------------- 223 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHHc------CCeEEEEeCCCccCCc------CC----------------------------
Confidence 5799999999999999999998 9999999987643210 00
Q ss_pred EeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccc
Q 007716 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (592)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~ 267 (592)
.++...+.+.+++.||+|++++.|+++..+++ .+ .|.+.+ .+|+.
T Consensus 224 ------------------------~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~-~v-~v~~~~----~~g~~----- 268 (475)
T PRK06327 224 ------------------------EQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGK-GV-SVAYTD----ADGEA----- 268 (475)
T ss_pred ------------------------HHHHHHHHHHHHHcCcEEEeCcEEEEEEEcCC-EE-EEEEEe----CCCce-----
Confidence 24555666777778999999999999987653 33 354433 12321
Q ss_pred cceEEEcCEEEEecCCCCcc
Q 007716 268 RGVELRGRITLLAEGCRGSL 287 (592)
Q Consensus 268 ~g~~i~a~~vI~A~G~~s~v 287 (592)
.++.+|.||+|+|..+..
T Consensus 269 --~~i~~D~vl~a~G~~p~~ 286 (475)
T PRK06327 269 --QTLEVDKLIVSIGRVPNT 286 (475)
T ss_pred --eEEEcCEEEEccCCccCC
Confidence 579999999999988874
No 302
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=98.06 E-value=8.1e-06 Score=89.50 Aligned_cols=38 Identities=39% Similarity=0.626 Sum_probs=35.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCC
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGA 150 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~ 150 (592)
..+|+|||||++|+++|..|++. |++|+|+|+.+.+|+
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~------g~~V~v~e~~~~~gG 180 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRA------GHTVTVFEREDRCGG 180 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHc------CCeEEEEecCCCCCc
Confidence 47999999999999999999998 999999999887765
No 303
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.04 E-value=4.4e-05 Score=83.63 Aligned_cols=104 Identities=17% Similarity=0.163 Sum_probs=76.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcE
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~ 186 (592)
.-.|+|||||+.|+.+|..++.+. ..|.+|+|+|+.+.+... ++
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~---~~G~~Vtli~~~~~il~~------~d--------------------------- 230 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYK---PRGGKVTLCYRNNMILRG------FD--------------------------- 230 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhc---cCCCeEEEEecCCccccc------cC---------------------------
Confidence 357999999999999997665421 018899999987653210 00
Q ss_pred EEeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCccccc
Q 007716 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (592)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f 266 (592)
.++.+.+.+.+++.||++++++.++++..++++. ..|.+.+
T Consensus 231 -------------------------~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~-~~v~~~~------------- 271 (486)
T TIGR01423 231 -------------------------STLRKELTKQLRANGINIMTNENPAKVTLNADGS-KHVTFES------------- 271 (486)
T ss_pred -------------------------HHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCce-EEEEEcC-------------
Confidence 3556667778888999999999999998665442 3455543
Q ss_pred ccceEEEcCEEEEecCCCCcc
Q 007716 267 QRGVELRGRITLLAEGCRGSL 287 (592)
Q Consensus 267 ~~g~~i~a~~vI~A~G~~s~v 287 (592)
|.++.+|.||.|+|..+..
T Consensus 272 --g~~i~~D~vl~a~G~~Pn~ 290 (486)
T TIGR01423 272 --GKTLDVDVVMMAIGRVPRT 290 (486)
T ss_pred --CCEEEcCEEEEeeCCCcCc
Confidence 4689999999999998874
No 304
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.03 E-value=3.4e-05 Score=83.69 Aligned_cols=104 Identities=13% Similarity=0.134 Sum_probs=77.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcEE
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~~ 187 (592)
-+|+|||||+.|+.+|..|++. |.+|+|+|+.+.+... +.
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~------g~~Vtli~~~~~l~~~------------------~d---------------- 188 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYER------GLHPTLIHRSDKINKL------------------MD---------------- 188 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCcEEEEecccccchh------------------cC----------------
Confidence 4799999999999999999998 9999999987643210 00
Q ss_pred EeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccc
Q 007716 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (592)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~ 267 (592)
.++.+.+.+.+++.||++++++.++++.. . .|.+.+
T Consensus 189 ------------------------~~~~~~l~~~l~~~gI~i~~~~~v~~i~~---~---~v~~~~-------------- 224 (438)
T PRK13512 189 ------------------------ADMNQPILDELDKREIPYRLNEEIDAING---N---EVTFKS-------------- 224 (438)
T ss_pred ------------------------HHHHHHHHHHHHhcCCEEEECCeEEEEeC---C---EEEECC--------------
Confidence 24555677778889999999999998852 1 255543
Q ss_pred cceEEEcCEEEEecCCCCcchHHHHHHcCCC
Q 007716 268 RGVELRGRITLLAEGCRGSLSEKLIKNFKLR 298 (592)
Q Consensus 268 ~g~~i~a~~vI~A~G~~s~vr~~l~~~~~l~ 298 (592)
|.++.+|.||.|+|.++.. .+.+..++.
T Consensus 225 -g~~~~~D~vl~a~G~~pn~--~~l~~~gl~ 252 (438)
T PRK13512 225 -GKVEHYDMIIEGVGTHPNS--KFIESSNIK 252 (438)
T ss_pred -CCEEEeCEEEECcCCCcCh--HHHHhcCcc
Confidence 4678999999999998863 233444443
No 305
>PLN02785 Protein HOTHEAD
Probab=98.03 E-value=0.0001 Score=82.48 Aligned_cols=35 Identities=43% Similarity=0.706 Sum_probs=31.9
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCC
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAE 147 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~ 147 (592)
..||+||||||.||+.+|.+|++ +.+|+|||++..
T Consensus 54 ~~yD~IIVG~G~aG~~lA~~Ls~-------~~~VLllE~G~~ 88 (587)
T PLN02785 54 SAYDYIVVGGGTAGCPLAATLSQ-------NFSVLLLERGGV 88 (587)
T ss_pred ccCCEEEECcCHHHHHHHHHHhc-------CCcEEEEecCCC
Confidence 46999999999999999999998 579999999863
No 306
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.03 E-value=5.7e-05 Score=82.03 Aligned_cols=98 Identities=17% Similarity=0.186 Sum_probs=75.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcEE
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~~ 187 (592)
-.|+|||||+.|+.+|..|++. |.+|+|+|+.+.+.. .+
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~~------g~~Vtli~~~~~~l~------------------~~----------------- 197 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFANF------GSKVTILEAASLFLP------------------RE----------------- 197 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHHC------CCeEEEEecCCCCCC------------------Cc-----------------
Confidence 4799999999999999999998 999999998754321 00
Q ss_pred EeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccc
Q 007716 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (592)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~ 267 (592)
-..+...+.+.+++.||++++++.++++..++ +.+ .|.+.+
T Consensus 198 -----------------------~~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~-~~v-~v~~~~-------------- 238 (441)
T PRK08010 198 -----------------------DRDIADNIATILRDQGVDIILNAHVERISHHE-NQV-QVHSEH-------------- 238 (441)
T ss_pred -----------------------CHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC-CEE-EEEEcC--------------
Confidence 02445567778888999999999999998664 333 344432
Q ss_pred cceEEEcCEEEEecCCCCcc
Q 007716 268 RGVELRGRITLLAEGCRGSL 287 (592)
Q Consensus 268 ~g~~i~a~~vI~A~G~~s~v 287 (592)
.++.+|.||+|.|.++..
T Consensus 239 --g~i~~D~vl~a~G~~pn~ 256 (441)
T PRK08010 239 --AQLAVDALLIASGRQPAT 256 (441)
T ss_pred --CeEEeCEEEEeecCCcCC
Confidence 358899999999998864
No 307
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=98.03 E-value=7e-05 Score=80.10 Aligned_cols=62 Identities=24% Similarity=0.222 Sum_probs=44.3
Q ss_pred cEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCC
Q 007716 206 NYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCR 284 (592)
Q Consensus 206 ~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~ 284 (592)
.+.+..+.+...+...+...|.+|+++++|++|..++ +.| .|.+.+ |.++.||.||.|....
T Consensus 203 ~~~~~~g~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~-~~v-~v~~~~---------------g~~~~ad~VI~a~p~~ 264 (450)
T PF01593_consen 203 GLTVGMGGLSLALALAAEELGGEIRLNTPVTRIERED-GGV-TVTTED---------------GETIEADAVISAVPPS 264 (450)
T ss_dssp TEEEETTTTHHHHHHHHHHHGGGEESSEEEEEEEEES-SEE-EEEETT---------------SSEEEESEEEE-S-HH
T ss_pred ceeecccchhHHHHHHHhhcCceeecCCcceeccccc-ccc-cccccc---------------ceEEecceeeecCchh
Confidence 3344445555666666666788999999999999988 445 466665 5699999999999854
No 308
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.02 E-value=8.3e-05 Score=83.17 Aligned_cols=67 Identities=21% Similarity=0.288 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCCCcc
Q 007716 211 LSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (592)
Q Consensus 211 ~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~v 287 (592)
...+...|.+.+++.||+|+.++.+++++.+++|+|+||...+ .++|+. ..+.||.||+|||+.+.+
T Consensus 125 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~---~~~g~~-------~~i~AkaVVLATGG~~~~ 191 (570)
T PRK05675 125 GHALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAIC---IETGET-------VYIKSKATVLATGGAGRI 191 (570)
T ss_pred HHHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEE---cCCCcE-------EEEecCeEEECCCCcccc
Confidence 4678899999999899999999999999987668999998643 134443 578999999999999864
No 309
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=98.02 E-value=1.1e-05 Score=86.92 Aligned_cols=73 Identities=34% Similarity=0.475 Sum_probs=57.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcEE
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~~ 187 (592)
..|.|||||||||++|..|++. |+.|+|+|+.+.+|+....| | |++.
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~------G~~Vtv~e~~~~~GGll~yG--I---------P~~k---------------- 170 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRA------GHDVTVFERVALDGGLLLYG--I---------PDFK---------------- 170 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhC------CCeEEEeCCcCCCceeEEec--C---------chhh----------------
Confidence 7899999999999999999999 99999999999988743322 1 1111
Q ss_pred EeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceE
Q 007716 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAA 235 (592)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v 235 (592)
++ .++.+...+.+++.|++++.++++
T Consensus 171 ---------l~-------------k~i~d~~i~~l~~~Gv~~~~~~~v 196 (457)
T COG0493 171 ---------LP-------------KDILDRRLELLERSGVEFKLNVRV 196 (457)
T ss_pred ---------cc-------------chHHHHHHHHHHHcCeEEEEcceE
Confidence 00 366667778888899999999877
No 310
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=98.01 E-value=1.2e-05 Score=92.38 Aligned_cols=38 Identities=24% Similarity=0.383 Sum_probs=33.9
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCC
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVG 149 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g 149 (592)
...+|+|||||||||+||+.|++. |++|+|+|+....|
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~------Gh~Vtv~E~~~i~g 419 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRS------GHNVTAIDGLKITL 419 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhC------CCeEEEEccccccc
Confidence 457899999999999999999998 99999999876443
No 311
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=98.01 E-value=3.2e-05 Score=77.68 Aligned_cols=40 Identities=30% Similarity=0.463 Sum_probs=36.3
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcc
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI 152 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~ 152 (592)
...+|+|||+|++||+||+.|+++ .+|+++|....+|+|.
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~r-------hdVTLfEA~~rlGGha 46 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSRR-------HDVTLFEADRRLGGHA 46 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhcc-------cceEEEeccccccCcc
Confidence 356799999999999999999995 7999999999999875
No 312
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.99 E-value=3.8e-05 Score=82.88 Aligned_cols=100 Identities=27% Similarity=0.433 Sum_probs=73.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhc--------CCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeee
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREK--------NVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRV 179 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~--------~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~ 179 (592)
..|+|||||++|+.+|..|+...... .++.+|+|+|+++.+... ++
T Consensus 174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~------~~-------------------- 227 (424)
T PTZ00318 174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGS------FD-------------------- 227 (424)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccccc------CC--------------------
Confidence 37999999999999999998643211 137899999987643210 00
Q ss_pred eccCCcEEEeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCC
Q 007716 180 PVSSDKFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKD 259 (592)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~ 259 (592)
..+.+.+.+.+++.||+++.++.|+++..+ .|.+.+
T Consensus 228 --------------------------------~~~~~~~~~~L~~~gV~v~~~~~v~~v~~~------~v~~~~------ 263 (424)
T PTZ00318 228 --------------------------------QALRKYGQRRLRRLGVDIRTKTAVKEVLDK------EVVLKD------ 263 (424)
T ss_pred --------------------------------HHHHHHHHHHHHHCCCEEEeCCeEEEEeCC------EEEECC------
Confidence 245566777778899999999999887532 255554
Q ss_pred CCcccccccceEEEcCEEEEecCCCCc
Q 007716 260 GSKKENFQRGVELRGRITLLAEGCRGS 286 (592)
Q Consensus 260 G~~~~~f~~g~~i~a~~vI~A~G~~s~ 286 (592)
|.++.+|.+|.|.|..+.
T Consensus 264 ---------g~~i~~d~vi~~~G~~~~ 281 (424)
T PTZ00318 264 ---------GEVIPTGLVVWSTGVGPG 281 (424)
T ss_pred ---------CCEEEccEEEEccCCCCc
Confidence 578999999999997664
No 313
>PRK14694 putative mercuric reductase; Provisional
Probab=97.99 E-value=7.7e-05 Score=81.63 Aligned_cols=97 Identities=21% Similarity=0.232 Sum_probs=74.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcEE
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~~ 187 (592)
-.|+|||+|+.|+.+|..|++. |.+|+|+++...+.. +
T Consensus 179 ~~vvViG~G~~G~E~A~~l~~~------g~~Vtlv~~~~~l~~-------------------~----------------- 216 (468)
T PRK14694 179 ERLLVIGASVVALELAQAFARL------GSRVTVLARSRVLSQ-------------------E----------------- 216 (468)
T ss_pred CeEEEECCCHHHHHHHHHHHHc------CCeEEEEECCCCCCC-------------------C-----------------
Confidence 4799999999999999999998 999999986421110 0
Q ss_pred EeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccc
Q 007716 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (592)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~ 267 (592)
..++...+.+.+++.||++++++.+.++..++ +.+ .+.+.+
T Consensus 217 -----------------------~~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~-~~~-~v~~~~-------------- 257 (468)
T PRK14694 217 -----------------------DPAVGEAIEAAFRREGIEVLKQTQASEVDYNG-REF-ILETNA-------------- 257 (468)
T ss_pred -----------------------CHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC-CEE-EEEECC--------------
Confidence 02455667777888999999999999987654 322 344432
Q ss_pred cceEEEcCEEEEecCCCCcc
Q 007716 268 RGVELRGRITLLAEGCRGSL 287 (592)
Q Consensus 268 ~g~~i~a~~vI~A~G~~s~v 287 (592)
.++.+|.||+|+|.++..
T Consensus 258 --~~i~~D~vi~a~G~~pn~ 275 (468)
T PRK14694 258 --GTLRAEQLLVATGRTPNT 275 (468)
T ss_pred --CEEEeCEEEEccCCCCCc
Confidence 469999999999998874
No 314
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.99 E-value=7e-06 Score=86.37 Aligned_cols=40 Identities=43% Similarity=0.604 Sum_probs=36.9
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCccc
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII 153 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~ 153 (592)
+||+|||||++|+++|..|++. |.+|+|+|++..+|+.+.
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~------G~~V~viEk~~~iGG~~~ 41 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQL------NKRVLVVEKRNHIGGNCY 41 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhC------CCeEEEEecCCCCCCcee
Confidence 6999999999999999999998 999999999988888653
No 315
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.98 E-value=9.7e-05 Score=83.33 Aligned_cols=116 Identities=16% Similarity=0.137 Sum_probs=75.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcEE
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~~ 187 (592)
-+|+|||||+.|+..|..|++. |.+|+|+|+.+.+... ++
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~------G~eVTLIe~~~~ll~~------~d---------------------------- 352 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTAL------GSEVVSFEYSPQLLPL------LD---------------------------- 352 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhC------CCeEEEEeccCccccc------CC----------------------------
Confidence 4799999999999999999998 9999999987753210 00
Q ss_pred EeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHH-HHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCccccc
Q 007716 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKA-EELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (592)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a-~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f 266 (592)
.++.+.+.+.. ++.||+|++++.|.++..++++..+.|.+.+...+.++.+...+
T Consensus 353 ------------------------~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~ 408 (659)
T PTZ00153 353 ------------------------ADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNM 408 (659)
T ss_pred ------------------------HHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEecccccccccccccc
Confidence 23444455543 45899999999999998665333223443220000000000011
Q ss_pred ccceEEEcCEEEEecCCCCcc
Q 007716 267 QRGVELRGRITLLAEGCRGSL 287 (592)
Q Consensus 267 ~~g~~i~a~~vI~A~G~~s~v 287 (592)
....++.+|.||+|+|..+.+
T Consensus 409 ~~~~~i~aD~VlvAtGr~Pnt 429 (659)
T PTZ00153 409 NDIKETYVDSCLVATGRKPNT 429 (659)
T ss_pred ccceEEEcCEEEEEECcccCC
Confidence 112479999999999988764
No 316
>PLN02546 glutathione reductase
Probab=97.98 E-value=5.9e-05 Score=83.83 Aligned_cols=100 Identities=20% Similarity=0.229 Sum_probs=75.8
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcEE
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~~ 187 (592)
-+|+|||||..|+.+|..|++. |.+|+|+|+.+.+.. .+.
T Consensus 253 k~V~VIGgG~iGvE~A~~L~~~------g~~Vtlv~~~~~il~------------------~~d---------------- 292 (558)
T PLN02546 253 EKIAIVGGGYIALEFAGIFNGL------KSDVHVFIRQKKVLR------------------GFD---------------- 292 (558)
T ss_pred CeEEEECCCHHHHHHHHHHHhc------CCeEEEEEecccccc------------------ccC----------------
Confidence 4799999999999999999998 999999998764321 000
Q ss_pred EeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccc
Q 007716 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (592)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~ 267 (592)
..+...+.+.+++.||++++++.++++..++++.+ .|.+.+
T Consensus 293 ------------------------~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v-~v~~~~-------------- 333 (558)
T PLN02546 293 ------------------------EEVRDFVAEQMSLRGIEFHTEESPQAIIKSADGSL-SLKTNK-------------- 333 (558)
T ss_pred ------------------------HHHHHHHHHHHHHCCcEEEeCCEEEEEEEcCCCEE-EEEECC--------------
Confidence 24556677778889999999999999976554533 354432
Q ss_pred cceEEEcCEEEEecCCCCcc
Q 007716 268 RGVELRGRITLLAEGCRGSL 287 (592)
Q Consensus 268 ~g~~i~a~~vI~A~G~~s~v 287 (592)
+....+|.||+|.|..+..
T Consensus 334 -g~~~~~D~Viva~G~~Pnt 352 (558)
T PLN02546 334 -GTVEGFSHVMFATGRKPNT 352 (558)
T ss_pred -eEEEecCEEEEeeccccCC
Confidence 3344589999999998874
No 317
>PLN02268 probable polyamine oxidase
Probab=97.98 E-value=6.8e-06 Score=89.06 Aligned_cols=39 Identities=28% Similarity=0.572 Sum_probs=36.9
Q ss_pred cEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCccc
Q 007716 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII 153 (592)
Q Consensus 109 DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~ 153 (592)
+|+|||||++||+||+.|.+. |++|+|+|+++.+||++.
T Consensus 2 ~VvVIGaGisGL~aA~~L~~~------g~~v~vlEa~~r~GGri~ 40 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHDA------SFKVTLLESRDRIGGRVH 40 (435)
T ss_pred CEEEECCCHHHHHHHHHHHhC------CCeEEEEeCCCCCCceee
Confidence 699999999999999999998 999999999999999864
No 318
>PRK13984 putative oxidoreductase; Provisional
Probab=97.97 E-value=2.5e-05 Score=88.32 Aligned_cols=39 Identities=44% Similarity=0.551 Sum_probs=35.6
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCC
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGA 150 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~ 150 (592)
...+|+|||+|+||+++|..|++. |++|+|+|+.+.+|+
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~------G~~v~vie~~~~~gG 320 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATM------GYEVTVYESLSKPGG 320 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHC------CCeEEEEecCCCCCc
Confidence 357899999999999999999999 999999999887765
No 319
>PRK14727 putative mercuric reductase; Provisional
Probab=97.97 E-value=7.5e-05 Score=81.95 Aligned_cols=97 Identities=19% Similarity=0.165 Sum_probs=74.1
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcEE
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~~ 187 (592)
-.|+|||||+.|+.+|..|++. |.+|+|+++...+.. .
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~------G~~Vtlv~~~~~l~~-------------------~----------------- 226 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARL------GSRVTILARSTLLFR-------------------E----------------- 226 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHc------CCEEEEEEcCCCCCc-------------------c-----------------
Confidence 5799999999999999999998 999999986421100 0
Q ss_pred EeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccc
Q 007716 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (592)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~ 267 (592)
-..+...+.+.+++.||++++++.++++..+++ .+ .|.+.+
T Consensus 227 -----------------------d~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~-~~-~v~~~~-------------- 267 (479)
T PRK14727 227 -----------------------DPLLGETLTACFEKEGIEVLNNTQASLVEHDDN-GF-VLTTGH-------------- 267 (479)
T ss_pred -----------------------hHHHHHHHHHHHHhCCCEEEcCcEEEEEEEeCC-EE-EEEEcC--------------
Confidence 024556677778889999999999999976553 22 344433
Q ss_pred cceEEEcCEEEEecCCCCcc
Q 007716 268 RGVELRGRITLLAEGCRGSL 287 (592)
Q Consensus 268 ~g~~i~a~~vI~A~G~~s~v 287 (592)
.++.+|.||+|+|..+.+
T Consensus 268 --g~i~aD~VlvA~G~~pn~ 285 (479)
T PRK14727 268 --GELRAEKLLISTGRHANT 285 (479)
T ss_pred --CeEEeCEEEEccCCCCCc
Confidence 468999999999999864
No 320
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=97.96 E-value=7.4e-06 Score=90.23 Aligned_cols=63 Identities=10% Similarity=0.052 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCC
Q 007716 211 LSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCR 284 (592)
Q Consensus 211 ~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~ 284 (592)
...|.+.|.+.+++.|++|+++++|++|..++ +.+.+|.+.+. .+|+ +.++.||.||.+...+
T Consensus 231 ~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~-~~~~gv~~~~~---~~~~-------~~~~~ad~VI~~~~~~ 293 (492)
T TIGR02733 231 MQTLSDRLVEALKRDGGNLLTGQRVTAIHTKG-GRAGWVVVVDS---RKQE-------DLNVKADDVVANLPPQ 293 (492)
T ss_pred HHHHHHHHHHHHHhcCCEEeCCceEEEEEEeC-CeEEEEEEecC---CCCc-------eEEEECCEEEECCCHH
Confidence 46788999999999999999999999999876 45556766540 1111 2578999999998864
No 321
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=97.96 E-value=3e-05 Score=86.19 Aligned_cols=71 Identities=15% Similarity=0.239 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCCCcchHHHHH
Q 007716 214 LVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIK 293 (592)
Q Consensus 214 l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~vr~~l~~ 293 (592)
...+|.....+.|++|+.++.|.+|..++ ++++||++.+ .|.. ...+.+|.||+|.|+-.+ .+|+.
T Consensus 196 ~~~~l~~a~~r~nl~i~~~~~V~rI~~~~-~ra~GV~~~~-----~~~~------~~~~~ak~VIlaAGai~S--P~LLl 261 (532)
T TIGR01810 196 ARAYLHPAMKRPNLEVQTRAFVTKINFEG-NRATGVEFKK-----GGRK------EHTEANKEVILSAGAINS--PQLLQ 261 (532)
T ss_pred HHHHhhhhccCCCeEEEeCCEEEEEEecC-CeEEEEEEEe-----CCcE------EEEEEeeeEEEccCCCCC--HHHHH
Confidence 33444443335579999999999999975 7888998764 1111 134689999999998543 24444
Q ss_pred HcCCC
Q 007716 294 NFKLR 298 (592)
Q Consensus 294 ~~~l~ 298 (592)
..|+-
T Consensus 262 ~SGIG 266 (532)
T TIGR01810 262 LSGIG 266 (532)
T ss_pred hcCCC
Confidence 44554
No 322
>PRK07846 mycothione reductase; Reviewed
Probab=97.95 E-value=7.8e-05 Score=81.11 Aligned_cols=99 Identities=19% Similarity=0.243 Sum_probs=72.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcE
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~ 186 (592)
.-+|+|||||+.|+.+|..|++. |.+|+|+|+.+.+... ++
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~------G~~Vtli~~~~~ll~~------~d--------------------------- 206 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSAL------GVRVTVVNRSGRLLRH------LD--------------------------- 206 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc------CCeEEEEEcCCccccc------cC---------------------------
Confidence 35799999999999999999998 9999999987643210 00
Q ss_pred EEeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCccccc
Q 007716 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (592)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f 266 (592)
.++.+.+.+. .+.|+++++++.++++..++ +.+ .|.+.+
T Consensus 207 -------------------------~~~~~~l~~l-~~~~v~i~~~~~v~~i~~~~-~~v-~v~~~~------------- 245 (451)
T PRK07846 207 -------------------------DDISERFTEL-ASKRWDVRLGRNVVGVSQDG-SGV-TLRLDD------------- 245 (451)
T ss_pred -------------------------HHHHHHHHHH-HhcCeEEEeCCEEEEEEEcC-CEE-EEEECC-------------
Confidence 1233333332 24679999999999997654 333 355543
Q ss_pred ccceEEEcCEEEEecCCCCcc
Q 007716 267 QRGVELRGRITLLAEGCRGSL 287 (592)
Q Consensus 267 ~~g~~i~a~~vI~A~G~~s~v 287 (592)
|.++.+|.||+|+|..+..
T Consensus 246 --g~~i~~D~vl~a~G~~pn~ 264 (451)
T PRK07846 246 --GSTVEADVLLVATGRVPNG 264 (451)
T ss_pred --CcEeecCEEEEEECCccCc
Confidence 5689999999999998864
No 323
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.91 E-value=0.00012 Score=80.13 Aligned_cols=103 Identities=17% Similarity=0.173 Sum_probs=76.0
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcEE
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~~ 187 (592)
-+|+|||||+.|+.+|..|++. |.+|+|+|+.+.+... ++
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~------G~~Vtlv~~~~~il~~------~d---------------------------- 214 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRL------GSEVDVVEMFDQVIPA------AD---------------------------- 214 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHc------CCCEEEEecCCCCCCc------CC----------------------------
Confidence 4799999999999999999999 9999999987643210 00
Q ss_pred EeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccc
Q 007716 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (592)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~ 267 (592)
..+.+.+.+.+++. +++++++.++++..++++ + .|.+.+ .+|+
T Consensus 215 ------------------------~~~~~~~~~~l~~~-v~i~~~~~v~~i~~~~~~-~-~v~~~~----~~~~------ 257 (471)
T PRK06467 215 ------------------------KDIVKVFTKRIKKQ-FNIMLETKVTAVEAKEDG-I-YVTMEG----KKAP------ 257 (471)
T ss_pred ------------------------HHHHHHHHHHHhhc-eEEEcCCEEEEEEEcCCE-E-EEEEEe----CCCc------
Confidence 24455566667667 999999999999766533 3 344432 1121
Q ss_pred cceEEEcCEEEEecCCCCcch
Q 007716 268 RGVELRGRITLLAEGCRGSLS 288 (592)
Q Consensus 268 ~g~~i~a~~vI~A~G~~s~vr 288 (592)
+.++.+|.||+|+|..+.+.
T Consensus 258 -~~~i~~D~vi~a~G~~pn~~ 277 (471)
T PRK06467 258 -AEPQRYDAVLVAVGRVPNGK 277 (471)
T ss_pred -ceEEEeCEEEEeecccccCC
Confidence 25799999999999988753
No 324
>PRK13748 putative mercuric reductase; Provisional
Probab=97.90 E-value=0.00012 Score=82.18 Aligned_cols=97 Identities=16% Similarity=0.169 Sum_probs=74.4
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcEE
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~~ 187 (592)
-.|+|||||+.|+.+|..|++. |.+|+|+++...+.. .+
T Consensus 271 ~~vvViGgG~ig~E~A~~l~~~------g~~Vtli~~~~~l~~-------~d---------------------------- 309 (561)
T PRK13748 271 ERLAVIGSSVVALELAQAFARL------GSKVTILARSTLFFR-------ED---------------------------- 309 (561)
T ss_pred CeEEEECCCHHHHHHHHHHHHc------CCEEEEEecCccccc-------cC----------------------------
Confidence 5799999999999999999999 999999997431100 00
Q ss_pred EeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccc
Q 007716 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (592)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~ 267 (592)
.++...+.+.+++.||++++++.++++..++ +.+ .+.+.+
T Consensus 310 ------------------------~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~-~~~-~v~~~~-------------- 349 (561)
T PRK13748 310 ------------------------PAIGEAVTAAFRAEGIEVLEHTQASQVAHVD-GEF-VLTTGH-------------- 349 (561)
T ss_pred ------------------------HHHHHHHHHHHHHCCCEEEcCCEEEEEEecC-CEE-EEEecC--------------
Confidence 2455567777788999999999999987654 333 344433
Q ss_pred cceEEEcCEEEEecCCCCcc
Q 007716 268 RGVELRGRITLLAEGCRGSL 287 (592)
Q Consensus 268 ~g~~i~a~~vI~A~G~~s~v 287 (592)
.++.+|.||+|.|..+..
T Consensus 350 --~~i~~D~vi~a~G~~pn~ 367 (561)
T PRK13748 350 --GELRADKLLVATGRAPNT 367 (561)
T ss_pred --CeEEeCEEEEccCCCcCC
Confidence 369999999999998875
No 325
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=97.89 E-value=6.4e-05 Score=76.43 Aligned_cols=106 Identities=23% Similarity=0.315 Sum_probs=85.1
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcE
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~ 186 (592)
....+|||||..||..+.--.++ |.+|+++|-.+.+++. ++
T Consensus 211 Pk~~~viG~G~IGLE~gsV~~rL------GseVT~VEf~~~i~~~------mD--------------------------- 251 (506)
T KOG1335|consen 211 PKKLTVIGAGYIGLEMGSVWSRL------GSEVTVVEFLDQIGGV------MD--------------------------- 251 (506)
T ss_pred cceEEEEcCceeeeehhhHHHhc------CCeEEEEEehhhhccc------cC---------------------------
Confidence 45689999999999999999999 9999999988776651 11
Q ss_pred EEeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCccccc
Q 007716 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (592)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f 266 (592)
.++...+.+.+.+.|+++..+++|..+..+.||.| .|.+.+ .++|+.
T Consensus 252 -------------------------~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v-~i~ve~---ak~~k~---- 298 (506)
T KOG1335|consen 252 -------------------------GEISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPV-EIEVEN---AKTGKK---- 298 (506)
T ss_pred -------------------------HHHHHHHHHHHHhcCceeEeccEEEEeeccCCCce-EEEEEe---cCCCce----
Confidence 24555556666668999999999999999998855 577766 356654
Q ss_pred ccceEEEcCEEEEecCCCCcc
Q 007716 267 QRGVELRGRITLLAEGCRGSL 287 (592)
Q Consensus 267 ~~g~~i~a~~vI~A~G~~s~v 287 (592)
.++++|.+++|.|.++.+
T Consensus 299 ---~tle~DvlLVsiGRrP~t 316 (506)
T KOG1335|consen 299 ---ETLECDVLLVSIGRRPFT 316 (506)
T ss_pred ---eEEEeeEEEEEccCcccc
Confidence 789999999999977764
No 326
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.89 E-value=0.00014 Score=80.18 Aligned_cols=98 Identities=23% Similarity=0.206 Sum_probs=74.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcEE
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~~ 187 (592)
-+|+|||||+.|+.+|..|++. |.+|+|+++.. +... ++
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~------G~~Vtli~~~~-~l~~------~d---------------------------- 221 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNEL------GFDVTVAVRSI-PLRG------FD---------------------------- 221 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHc------CCcEEEEEcCc-cccc------CC----------------------------
Confidence 4799999999999999999999 99999998632 1110 00
Q ss_pred EeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccc
Q 007716 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (592)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~ 267 (592)
..+.+.+.+.+++.||+++.++.+.++...+ +.+ .|.+.+
T Consensus 222 ------------------------~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~-~~~-~v~~~~-------------- 261 (499)
T PTZ00052 222 ------------------------RQCSEKVVEYMKEQGTLFLEGVVPINIEKMD-DKI-KVLFSD-------------- 261 (499)
T ss_pred ------------------------HHHHHHHHHHHHHcCCEEEcCCeEEEEEEcC-CeE-EEEECC--------------
Confidence 2445566777788999999999998887654 323 355543
Q ss_pred cceEEEcCEEEEecCCCCcc
Q 007716 268 RGVELRGRITLLAEGCRGSL 287 (592)
Q Consensus 268 ~g~~i~a~~vI~A~G~~s~v 287 (592)
|.++.+|.||+|.|..+.+
T Consensus 262 -g~~i~~D~vl~a~G~~pn~ 280 (499)
T PTZ00052 262 -GTTELFDTVLYATGRKPDI 280 (499)
T ss_pred -CCEEEcCEEEEeeCCCCCc
Confidence 4678999999999988864
No 327
>PRK10262 thioredoxin reductase; Provisional
Probab=97.89 E-value=0.00012 Score=76.01 Aligned_cols=104 Identities=19% Similarity=0.234 Sum_probs=75.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcE
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~ 186 (592)
.-.|+|||+|..|+.+|..|++. +.+|+++++.+.+.. +
T Consensus 146 g~~vvVvGgG~~g~e~A~~l~~~------~~~Vtlv~~~~~~~~--------~--------------------------- 184 (321)
T PRK10262 146 NQKVAVIGGGNTAVEEALYLSNI------ASEVHLIHRRDGFRA--------E--------------------------- 184 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhh------CCEEEEEEECCccCC--------C---------------------------
Confidence 35799999999999999999998 999999998753211 0
Q ss_pred EEeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCccccc
Q 007716 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (592)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f 266 (592)
..+.+.+.+.+++.||++++++.++++..++ +.+.+|++.+. .++.
T Consensus 185 -------------------------~~~~~~~~~~l~~~gV~i~~~~~v~~v~~~~-~~~~~v~~~~~---~~~~----- 230 (321)
T PRK10262 185 -------------------------KILIKRLMDKVENGNIILHTNRTLEEVTGDQ-MGVTGVRLRDT---QNSD----- 230 (321)
T ss_pred -------------------------HHHHHHHHhhccCCCeEEEeCCEEEEEEcCC-ccEEEEEEEEc---CCCC-----
Confidence 1233445666677899999999999987654 34556666531 1111
Q ss_pred ccceEEEcCEEEEecCCCCc
Q 007716 267 QRGVELRGRITLLAEGCRGS 286 (592)
Q Consensus 267 ~~g~~i~a~~vI~A~G~~s~ 286 (592)
+..++.+|.||.|.|..+.
T Consensus 231 -~~~~i~~D~vv~a~G~~p~ 249 (321)
T PRK10262 231 -NIESLDVAGLFVAIGHSPN 249 (321)
T ss_pred -eEEEEECCEEEEEeCCccC
Confidence 1257999999999997664
No 328
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.89 E-value=9.9e-05 Score=81.70 Aligned_cols=99 Identities=29% Similarity=0.363 Sum_probs=72.4
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcE
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~ 186 (592)
..+|+|||||+.|+.+|..|++. +.+|+|+|+.+.+..
T Consensus 352 ~k~VvViGgG~~g~E~A~~L~~~------g~~Vtli~~~~~l~~------------------------------------ 389 (515)
T TIGR03140 352 GKDVAVIGGGNSGIEAAIDLAGI------VRHVTVLEFADELKA------------------------------------ 389 (515)
T ss_pred CCEEEEECCcHHHHHHHHHHHhc------CcEEEEEEeCCcCCh------------------------------------
Confidence 35799999999999999999998 999999997653210
Q ss_pred EEeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHH-cCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccc
Q 007716 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEE-LGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKEN 265 (592)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~-~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~ 265 (592)
...+.+.+++ .||+|++++.++++..++ +.+.+|.+.+. .+|+
T Consensus 390 ----------------------------~~~l~~~l~~~~gV~i~~~~~v~~i~~~~-~~v~~v~~~~~---~~~~---- 433 (515)
T TIGR03140 390 ----------------------------DKVLQDKLKSLPNVDILTSAQTTEIVGDG-DKVTGIRYQDR---NSGE---- 433 (515)
T ss_pred ----------------------------hHHHHHHHhcCCCCEEEECCeeEEEEcCC-CEEEEEEEEEC---CCCc----
Confidence 0113344444 599999999999987654 55666776541 1222
Q ss_pred cccceEEEcCEEEEecCCCCc
Q 007716 266 FQRGVELRGRITLLAEGCRGS 286 (592)
Q Consensus 266 f~~g~~i~a~~vI~A~G~~s~ 286 (592)
+.++.+|.||+|.|..+.
T Consensus 434 ---~~~i~~D~vi~a~G~~Pn 451 (515)
T TIGR03140 434 ---EKQLDLDGVFVQIGLVPN 451 (515)
T ss_pred ---EEEEEcCEEEEEeCCcCC
Confidence 257999999999997764
No 329
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=97.87 E-value=0.001 Score=65.79 Aligned_cols=41 Identities=24% Similarity=0.293 Sum_probs=33.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHhh-hhcCCCCcEEEEcCCCC
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLC-REKNVDLSVCVVEKGAE 147 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~-~~~~~g~~V~vlEk~~~ 147 (592)
..+|+|||+|+.||++|+.+.+.. +...|.++|+|++-+..
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~ 44 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFT 44 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCc
Confidence 468999999999999999888842 33456789999986654
No 330
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.87 E-value=4.9e-05 Score=79.93 Aligned_cols=109 Identities=26% Similarity=0.252 Sum_probs=73.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcE
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~ 186 (592)
...|||||||.+|+.+|..|.+.. ++.+|++||+...---. -++.+..
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~----~~~~itLVd~~~~hl~~-------------plL~eva--------------- 50 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKL----PDVEITLVDRRDYHLFT-------------PLLYEVA--------------- 50 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcC----CCCcEEEEeCCCccccc-------------hhhhhhh---------------
Confidence 456999999999999999999972 15899999998752211 0111000
Q ss_pred EEeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcC-CEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccc
Q 007716 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELG-VEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKEN 265 (592)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G-v~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~ 265 (592)
...++...+.--+.+.+...+ |+++.+ +|++|+.++. .|++.+
T Consensus 51 -------------------~g~l~~~~i~~p~~~~~~~~~~v~~~~~-~V~~ID~~~k----~V~~~~------------ 94 (405)
T COG1252 51 -------------------TGTLSESEIAIPLRALLRKSGNVQFVQG-EVTDIDRDAK----KVTLAD------------ 94 (405)
T ss_pred -------------------cCCCChhheeccHHHHhcccCceEEEEE-EEEEEcccCC----EEEeCC------------
Confidence 111222344444555555455 888866 6888888763 366654
Q ss_pred cccceEEEcCEEEEecCCCCc
Q 007716 266 FQRGVELRGRITLLAEGCRGS 286 (592)
Q Consensus 266 f~~g~~i~a~~vI~A~G~~s~ 286 (592)
+.++..|++|+|.|+...
T Consensus 95 ---~~~i~YD~LVvalGs~~~ 112 (405)
T COG1252 95 ---LGEISYDYLVVALGSETN 112 (405)
T ss_pred ---CccccccEEEEecCCcCC
Confidence 468999999999999865
No 331
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.86 E-value=0.00016 Score=78.64 Aligned_cols=99 Identities=20% Similarity=0.264 Sum_probs=71.9
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcE
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~ 186 (592)
...|+|||||+.|+.+|..|++. |.+|+++|+.+.+... ++
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~------G~~Vtli~~~~~ll~~------~d--------------------------- 209 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSAL------GTRVTIVNRSTKLLRH------LD--------------------------- 209 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhC------CCcEEEEEccCccccc------cC---------------------------
Confidence 35799999999999999999998 9999999987643210 00
Q ss_pred EEeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCccccc
Q 007716 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (592)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f 266 (592)
.++...+.+. .+.|+++++++.|+++..++++ + .|.+.+
T Consensus 210 -------------------------~~~~~~l~~~-~~~gI~i~~~~~V~~i~~~~~~-v-~v~~~~------------- 248 (452)
T TIGR03452 210 -------------------------EDISDRFTEI-AKKKWDIRLGRNVTAVEQDGDG-V-TLTLDD------------- 248 (452)
T ss_pred -------------------------HHHHHHHHHH-HhcCCEEEeCCEEEEEEEcCCe-E-EEEEcC-------------
Confidence 1222333332 2358999999999999866533 3 355443
Q ss_pred ccceEEEcCEEEEecCCCCcc
Q 007716 267 QRGVELRGRITLLAEGCRGSL 287 (592)
Q Consensus 267 ~~g~~i~a~~vI~A~G~~s~v 287 (592)
|.++.+|.||+|+|..+..
T Consensus 249 --g~~i~~D~vl~a~G~~pn~ 267 (452)
T TIGR03452 249 --GSTVTADVLLVATGRVPNG 267 (452)
T ss_pred --CCEEEcCEEEEeeccCcCC
Confidence 4689999999999988763
No 332
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.84 E-value=0.00018 Score=78.86 Aligned_cols=101 Identities=24% Similarity=0.253 Sum_probs=74.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcEE
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~~ 187 (592)
-.|+|||||+.|+.+|..|++. |.+|+|+++. .+.. .+.
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~------G~~Vtli~~~-~~l~------------------~~d---------------- 219 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGI------GLDVTVMVRS-ILLR------------------GFD---------------- 219 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHh------CCcEEEEEec-cccc------------------ccC----------------
Confidence 3699999999999999999999 9999999863 2110 000
Q ss_pred EeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccc
Q 007716 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (592)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~ 267 (592)
.++...+.+.+++.||+|++++.+.++...+ +.+ .|.+.+ |.
T Consensus 220 ------------------------~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~-~~~-~v~~~~------~~------ 261 (484)
T TIGR01438 220 ------------------------QDCANKVGEHMEEHGVKFKRQFVPIKVEQIE-AKV-KVTFTD------ST------ 261 (484)
T ss_pred ------------------------HHHHHHHHHHHHHcCCEEEeCceEEEEEEcC-CeE-EEEEec------CC------
Confidence 2455667777888999999999998887654 322 355433 11
Q ss_pred cceEEEcCEEEEecCCCCcc
Q 007716 268 RGVELRGRITLLAEGCRGSL 287 (592)
Q Consensus 268 ~g~~i~a~~vI~A~G~~s~v 287 (592)
.+.++.+|.||.|.|..+.+
T Consensus 262 ~~~~i~~D~vl~a~G~~pn~ 281 (484)
T TIGR01438 262 NGIEEEYDTVLLAIGRDACT 281 (484)
T ss_pred cceEEEeCEEEEEecCCcCC
Confidence 02479999999999988764
No 333
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.82 E-value=2.1e-05 Score=78.32 Aligned_cols=40 Identities=38% Similarity=0.507 Sum_probs=37.9
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCccc
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHII 153 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~ 153 (592)
+|++|||||.+|+..|..|+++ |.+|.|+||++.+||.+-
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~------gk~VLIvekR~HIGGNaY 41 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQL------GKRVLIVEKRNHIGGNAY 41 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHc------CCEEEEEeccccCCCccc
Confidence 7999999999999999999999 999999999999999773
No 334
>PLN02568 polyamine oxidase
Probab=97.81 E-value=2.1e-05 Score=87.10 Aligned_cols=46 Identities=39% Similarity=0.522 Sum_probs=37.5
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcc
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI 152 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~ 152 (592)
+..||+|||||++||+||+.|++... ..++.+|+|+|++..+||.+
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~g~-~~~~~~v~v~E~~~~~GGr~ 49 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTSSA-ANDMFELTVVEGGDRIGGRI 49 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhccc-ccCCceEEEEeCCCCcCCeE
Confidence 45799999999999999999998700 00138999999999998875
No 335
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.81 E-value=0.00024 Score=77.62 Aligned_cols=103 Identities=19% Similarity=0.238 Sum_probs=75.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcE
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~ 186 (592)
.-+|+|||||+.|+.+|..|++. |.+|+++|+.+.+... +
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~------g~~Vtli~~~~~~l~~------------------~---------------- 208 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRL------GVKVTVFERGDRILPL------------------E---------------- 208 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc------CCcEEEEecCCCcCcc------------------h----------------
Confidence 35799999999999999999998 9999999987643210 0
Q ss_pred EEeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCccccc
Q 007716 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (592)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f 266 (592)
-.++...+.+.+++. |++++++.++++..+++..+ .++..+ |+
T Consensus 209 ------------------------d~~~~~~~~~~l~~~-I~i~~~~~v~~i~~~~~~~v-~~~~~~------~~----- 251 (460)
T PRK06292 209 ------------------------DPEVSKQAQKILSKE-FKIKLGAKVTSVEKSGDEKV-EELEKG------GK----- 251 (460)
T ss_pred ------------------------hHHHHHHHHHHHhhc-cEEEcCCEEEEEEEcCCceE-EEEEcC------Cc-----
Confidence 024555667777778 99999999999976543122 232222 21
Q ss_pred ccceEEEcCEEEEecCCCCcch
Q 007716 267 QRGVELRGRITLLAEGCRGSLS 288 (592)
Q Consensus 267 ~~g~~i~a~~vI~A~G~~s~vr 288 (592)
+.++.+|.||.|.|..+.+.
T Consensus 252 --~~~i~~D~vi~a~G~~p~~~ 271 (460)
T PRK06292 252 --TETIEADYVLVATGRRPNTD 271 (460)
T ss_pred --eEEEEeCEEEEccCCccCCC
Confidence 36799999999999987754
No 336
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.78 E-value=0.00018 Score=79.74 Aligned_cols=98 Identities=27% Similarity=0.310 Sum_probs=72.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcEE
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~~ 187 (592)
-+|+|||||..|+.+|..|++. +.+|+|+++.+.+..
T Consensus 352 k~VvVVGgG~~g~e~A~~L~~~------~~~Vtlv~~~~~l~~------------------------------------- 388 (517)
T PRK15317 352 KRVAVIGGGNSGVEAAIDLAGI------VKHVTVLEFAPELKA------------------------------------- 388 (517)
T ss_pred CEEEEECCCHHHHHHHHHHHhc------CCEEEEEEECccccc-------------------------------------
Confidence 5799999999999999999998 999999997753211
Q ss_pred EeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHH-cCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCccccc
Q 007716 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEE-LGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (592)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~-~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f 266 (592)
...|.+.+.+ .||++++++.++++..++ +.+.+|.+.+ ..+|+
T Consensus 389 ---------------------------~~~l~~~l~~~~gI~i~~~~~v~~i~~~~-g~v~~v~~~~---~~~g~----- 432 (517)
T PRK15317 389 ---------------------------DQVLQDKLRSLPNVTIITNAQTTEVTGDG-DKVTGLTYKD---RTTGE----- 432 (517)
T ss_pred ---------------------------cHHHHHHHhcCCCcEEEECcEEEEEEcCC-CcEEEEEEEE---CCCCc-----
Confidence 0112333333 589999999999998654 5676777654 12233
Q ss_pred ccceEEEcCEEEEecCCCCc
Q 007716 267 QRGVELRGRITLLAEGCRGS 286 (592)
Q Consensus 267 ~~g~~i~a~~vI~A~G~~s~ 286 (592)
..++.+|.|++|.|..+.
T Consensus 433 --~~~i~~D~v~~~~G~~p~ 450 (517)
T PRK15317 433 --EHHLELEGVFVQIGLVPN 450 (517)
T ss_pred --EEEEEcCEEEEeECCccC
Confidence 257999999999997764
No 337
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.77 E-value=2.3e-05 Score=83.45 Aligned_cols=40 Identities=38% Similarity=0.526 Sum_probs=37.2
Q ss_pred cEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccc
Q 007716 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIIS 154 (592)
Q Consensus 109 DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~ 154 (592)
.|+|+|||+|||+||+.|+.+ |++|+|+|.++.+||.+.+
T Consensus 2 rVai~GaG~AgL~~a~~La~~------g~~vt~~ea~~~~GGk~~s 41 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELADA------GYDVTLYEARDRLGGKVAS 41 (485)
T ss_pred eEEEEcccHHHHHHHHHHHhC------CCceEEEeccCccCceeee
Confidence 599999999999999999999 9999999999999987643
No 338
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.74 E-value=2.9e-05 Score=81.07 Aligned_cols=41 Identities=32% Similarity=0.657 Sum_probs=38.1
Q ss_pred cccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCc
Q 007716 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAH 151 (592)
Q Consensus 105 ~~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~ 151 (592)
.+.-+|+|||||+||++||+.|++. |++|.++||.+.+||+
T Consensus 122 ~v~~svLVIGGGvAGitAAl~La~~------G~~v~LVEKepsiGGr 162 (622)
T COG1148 122 EVSKSVLVIGGGVAGITAALELADM------GFKVYLVEKEPSIGGR 162 (622)
T ss_pred hhccceEEEcCcHHHHHHHHHHHHc------CCeEEEEecCCccccc
Confidence 3557899999999999999999999 9999999999999986
No 339
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=97.73 E-value=0.00032 Score=71.61 Aligned_cols=98 Identities=22% Similarity=0.294 Sum_probs=70.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcE
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~ 186 (592)
..+|+|||+|+.|+-+|..|++. +.+|+++++.+.+..
T Consensus 141 ~~~v~ViG~G~~~~e~a~~l~~~------~~~V~~v~~~~~~~~------------------------------------ 178 (300)
T TIGR01292 141 NKEVAVVGGGDSAIEEALYLTRI------AKKVTLVHRRDKFRA------------------------------------ 178 (300)
T ss_pred CCEEEEECCChHHHHHHHHHHhh------cCEEEEEEeCcccCc------------------------------------
Confidence 35799999999999999999998 899999998642110
Q ss_pred EEeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHc-CCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccc
Q 007716 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKEN 265 (592)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~-Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~ 265 (592)
... +.+.+++. ||++++++.++++..++ .+..+.+.+ ..+|+
T Consensus 179 ------------------------~~~----~~~~l~~~~gv~~~~~~~v~~i~~~~--~~~~v~~~~---~~~g~---- 221 (300)
T TIGR01292 179 ------------------------EKI----LLDRLRKNPNIEFLWNSTVKEIVGDN--KVEGVKIKN---TVTGE---- 221 (300)
T ss_pred ------------------------CHH----HHHHHHhCCCeEEEeccEEEEEEccC--cEEEEEEEe---cCCCc----
Confidence 011 23344556 99999999999987543 454565533 11232
Q ss_pred cccceEEEcCEEEEecCCCCc
Q 007716 266 FQRGVELRGRITLLAEGCRGS 286 (592)
Q Consensus 266 f~~g~~i~a~~vI~A~G~~s~ 286 (592)
+.++.+|.||.|+|..+.
T Consensus 222 ---~~~i~~D~vi~a~G~~~~ 239 (300)
T TIGR01292 222 ---EEELKVDGVFIAIGHEPN 239 (300)
T ss_pred ---eEEEEccEEEEeeCCCCC
Confidence 368999999999997664
No 340
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.70 E-value=0.00035 Score=73.78 Aligned_cols=99 Identities=21% Similarity=0.306 Sum_probs=68.9
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcEE
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~~ 187 (592)
.+|+|||||++|+.+|..|++...+.+...+|+|+. .+.+.. ..
T Consensus 146 ~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li~-~~~~l~------------------~~----------------- 189 (364)
T TIGR03169 146 KRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLIA-GASLLP------------------GF----------------- 189 (364)
T ss_pred ceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEEe-CCcccc------------------cC-----------------
Confidence 479999999999999999987533222235788883 221110 00
Q ss_pred EeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccc
Q 007716 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (592)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~ 267 (592)
...+...+.+.+++.||+++.++.++++.. + .|.+.+
T Consensus 190 -----------------------~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~---~---~v~~~~-------------- 226 (364)
T TIGR03169 190 -----------------------PAKVRRLVLRLLARRGIEVHEGAPVTRGPD---G---ALILAD-------------- 226 (364)
T ss_pred -----------------------CHHHHHHHHHHHHHCCCEEEeCCeeEEEcC---C---eEEeCC--------------
Confidence 024455667777889999999999988742 2 355544
Q ss_pred cceEEEcCEEEEecCCCCc
Q 007716 268 RGVELRGRITLLAEGCRGS 286 (592)
Q Consensus 268 ~g~~i~a~~vI~A~G~~s~ 286 (592)
|.++.+|.||+|+|..+.
T Consensus 227 -g~~i~~D~vi~a~G~~p~ 244 (364)
T TIGR03169 227 -GRTLPADAILWATGARAP 244 (364)
T ss_pred -CCEEecCEEEEccCCChh
Confidence 578999999999997753
No 341
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=97.57 E-value=8e-05 Score=76.90 Aligned_cols=45 Identities=36% Similarity=0.535 Sum_probs=39.0
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccc
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIIS 154 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~ 154 (592)
+..+|+|||||++||++|++|+++ .|+..|+|+|+.+.+|+.+.+
T Consensus 10 ~~~~vaVvGGGiSGL~aay~L~r~----~p~~~i~l~Ea~~RvGGwirS 54 (491)
T KOG1276|consen 10 SGMTVAVVGGGISGLCAAYYLARL----GPDVTITLFEASPRVGGWIRS 54 (491)
T ss_pred ecceEEEECCchhHHHHHHHHHhc----CCCceEEEEecCCcccceeee
Confidence 567899999999999999999998 455667789999999987765
No 342
>PLN02529 lysine-specific histone demethylase 1
Probab=97.53 E-value=9.7e-05 Score=83.92 Aligned_cols=41 Identities=39% Similarity=0.542 Sum_probs=37.5
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcc
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI 152 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~ 152 (592)
...||+|||||++||+||..|++. |++|+|+|++..+|+.+
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~------g~~v~v~E~~~~~GG~~ 199 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSF------GFKVVVLEGRNRPGGRV 199 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHc------CCcEEEEecCccCcCce
Confidence 467999999999999999999999 99999999998887754
No 343
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.52 E-value=0.00049 Score=72.35 Aligned_cols=109 Identities=21% Similarity=0.231 Sum_probs=69.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcCCCCc-EEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcE
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLS-VCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~-V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~ 186 (592)
-.|+|||+|+.|+.+|..|.+. |.+ |+|+++......
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~------g~~~Vtvi~~~~~~~~------------------------------------ 210 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLL------GAEKVYLAYRRTINEA------------------------------------ 210 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHc------CCCeEEEEeecchhhC------------------------------------
Confidence 4699999999999999999888 887 999987542100
Q ss_pred EEeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCccc---CCCCcc
Q 007716 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIA---KDGSKK 263 (592)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~---~~G~~~ 263 (592)
+ . ...+.+.+++.||++++++.+++++.+ +.+..|.+.+...+ ..+.++
T Consensus 211 -----------~--~-------------~~~~~~~l~~~gi~i~~~~~v~~i~~~--~~~~~v~~~~~~~~~~~~~~~~~ 262 (352)
T PRK12770 211 -----------P--A-------------GKYEIERLIARGVEFLELVTPVRIIGE--GRVEGVELAKMRLGEPDESGRPR 262 (352)
T ss_pred -----------C--C-------------CHHHHHHHHHcCCEEeeccCceeeecC--CcEeEEEEEEEEecCcCcccCcC
Confidence 0 0 011233456689999999999988643 34545554321100 000000
Q ss_pred --cccccceEEEcCEEEEecCCCCc
Q 007716 264 --ENFQRGVELRGRITLLAEGCRGS 286 (592)
Q Consensus 264 --~~f~~g~~i~a~~vI~A~G~~s~ 286 (592)
..-..+.++.+|.||.|.|..+.
T Consensus 263 ~~~~~~~~~~i~~D~vi~a~G~~p~ 287 (352)
T PRK12770 263 PVPIPGSEFVLEADTVVFAIGEIPT 287 (352)
T ss_pred ceecCCCeEEEECCEEEECcccCCC
Confidence 00012468999999999997764
No 344
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=97.52 E-value=0.00035 Score=76.96 Aligned_cols=150 Identities=26% Similarity=0.326 Sum_probs=97.4
Q ss_pred CCccCCCCCCCccccCcccccccccchhhhhhhcccccccccccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEc
Q 007716 64 CFFSSGYFPNGVNLKGFGRNESGVSCAKLFFRSFCSEMCRESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVE 143 (592)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlE 143 (592)
-+++++++|...++++.....-..... .......... ....-..+|||||.-||.+|..|.+. |++|.|++
T Consensus 105 LilATGS~pfi~PiPG~~~~~v~~~R~--i~D~~am~~~-ar~~~~avVIGGGLLGlEaA~~L~~~------Gm~~~Vvh 175 (793)
T COG1251 105 LIIATGSYPFILPIPGSDLPGVFVYRT--IDDVEAMLDC-ARNKKKAVVIGGGLLGLEAARGLKDL------GMEVTVVH 175 (793)
T ss_pred eEEecCccccccCCCCCCCCCeeEEec--HHHHHHHHHH-HhccCCcEEEccchhhhHHHHHHHhC------CCceEEEe
Confidence 356677777777766655332221111 0000000000 00122379999999999999999999 99999999
Q ss_pred CCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcEEEeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHH
Q 007716 144 KGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAE 223 (592)
Q Consensus 144 k~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~ 223 (592)
-.+.+ +.+.+. ..-...|....+
T Consensus 176 ~~~~l--------------MerQLD-------------------------------------------~~ag~lL~~~le 198 (793)
T COG1251 176 IAPTL--------------MERQLD-------------------------------------------RTAGRLLRRKLE 198 (793)
T ss_pred ecchH--------------HHHhhh-------------------------------------------hHHHHHHHHHHH
Confidence 66531 111110 122344777778
Q ss_pred HcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCCCcchHHHHHHcCCC
Q 007716 224 ELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNFKLR 298 (592)
Q Consensus 224 ~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~vr~~l~~~~~l~ 298 (592)
+.|++++++...+++.- ++.+.+|++.| |..+.||.||.|+|.++.+ .+...-++.
T Consensus 199 ~~Gi~~~l~~~t~ei~g--~~~~~~vr~~D---------------G~~i~ad~VV~a~GIrPn~--ela~~aGla 254 (793)
T COG1251 199 DLGIKVLLEKNTEEIVG--EDKVEGVRFAD---------------GTEIPADLVVMAVGIRPND--ELAKEAGLA 254 (793)
T ss_pred hhcceeecccchhhhhc--CcceeeEeecC---------------CCcccceeEEEeccccccc--HhHHhcCcC
Confidence 89999999988877765 35677888776 7899999999999999864 455555665
No 345
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.51 E-value=0.00057 Score=77.95 Aligned_cols=110 Identities=16% Similarity=0.199 Sum_probs=75.4
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcCCCC-cEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcE
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDL-SVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~~g~-~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~ 186 (592)
..|+|||||..|+-+|..+.++ |. +|+++.++....-
T Consensus 469 k~VvVIGgG~~a~d~A~~a~r~------ga~~Vt~i~~~~~~~~------------------------------------ 506 (654)
T PRK12769 469 LNVVVLGGGDTAMDCVRTALRH------GASNVTCAYRRDEANM------------------------------------ 506 (654)
T ss_pred CeEEEECCcHHHHHHHHHHHHc------CCCeEEEeEecCCCCC------------------------------------
Confidence 4799999999999999988888 86 6999887643110
Q ss_pred EEeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCc---ccCCCCcc
Q 007716 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMG---IAKDGSKK 263 (592)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g---~~~~G~~~ 263 (592)
+. . .. ..+.+++.||+++++..++++..+++|.+.+|++..+. .+.+|...
T Consensus 507 -----------~~----------~-~~----e~~~~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~ 560 (654)
T PRK12769 507 -----------PG----------S-KK----EVKNAREEGANFEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRR 560 (654)
T ss_pred -----------CC----------C-HH----HHHHHHHcCCeEEeccCcEEEEECCCCeEEEEEEEEEEecCcCCCCCCc
Confidence 00 0 01 23456778999999999999987666778778764321 23445432
Q ss_pred cccccc--eEEEcCEEEEecCCCC
Q 007716 264 ENFQRG--VELRGRITLLAEGCRG 285 (592)
Q Consensus 264 ~~f~~g--~~i~a~~vI~A~G~~s 285 (592)
....+| .++.+|.||+|.|..+
T Consensus 561 ~~~~~g~~~~i~~D~Vi~AiG~~p 584 (654)
T PRK12769 561 PVPIPGSEFVMPADAVIMAFGFNP 584 (654)
T ss_pred ceeCCCceEEEECCEEEECccCCC
Confidence 222223 4699999999999654
No 346
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.48 E-value=0.00012 Score=83.76 Aligned_cols=41 Identities=41% Similarity=0.568 Sum_probs=37.6
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcc
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI 152 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~ 152 (592)
...+|+|||||++||+||+.|++. |++|+|+|++..+||.+
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~------g~~v~v~E~~~r~GGr~ 277 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSM------GFKVVVLEGRARPGGRV 277 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHC------CCcEEEEeccccCCCcc
Confidence 357899999999999999999998 99999999999888764
No 347
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.44 E-value=0.00082 Score=77.95 Aligned_cols=111 Identities=21% Similarity=0.287 Sum_probs=75.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcCCCCc-EEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcE
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLS-VCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~-V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~ 186 (592)
-.|||||||..|+-+|..|.+. |.+ |+|++++....
T Consensus 571 k~VvVIGgG~~a~d~A~~~~r~------Ga~~Vtlv~r~~~~~------------------------------------- 607 (752)
T PRK12778 571 KKVAVVGGGNTAMDSARTAKRL------GAERVTIVYRRSEEE------------------------------------- 607 (752)
T ss_pred CcEEEECCcHHHHHHHHHHHHc------CCCeEEEeeecCccc-------------------------------------
Confidence 5799999999999999999998 987 99999764210
Q ss_pred EEeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCc---ccCCCCcc
Q 007716 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMG---IAKDGSKK 263 (592)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g---~~~~G~~~ 263 (592)
++. ....+ +.+++.||++++++.++++..+++|.+.+|.+..+. .+.+|...
T Consensus 608 ----------~~~----------~~~e~-----~~~~~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~ 662 (752)
T PRK12778 608 ----------MPA----------RLEEV-----KHAKEEGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRR 662 (752)
T ss_pred ----------CCC----------CHHHH-----HHHHHcCCEEEecCcceEEEECCCCEEEEEEEEEEEecCcCCCCCCC
Confidence 000 00111 345668999999999999987766778777764221 12234321
Q ss_pred ccccc--ceEEEcCEEEEecCCCCc
Q 007716 264 ENFQR--GVELRGRITLLAEGCRGS 286 (592)
Q Consensus 264 ~~f~~--g~~i~a~~vI~A~G~~s~ 286 (592)
....+ ..++.+|.||.|.|..+.
T Consensus 663 ~~~~~g~~~~i~~D~Vi~A~G~~p~ 687 (752)
T PRK12778 663 PVAIPGSTFTVDVDLVIVSVGVSPN 687 (752)
T ss_pred ceecCCCeEEEECCEEEECcCCCCC
Confidence 11111 247999999999996653
No 348
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.42 E-value=0.00086 Score=73.18 Aligned_cols=111 Identities=27% Similarity=0.308 Sum_probs=72.3
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCC-cEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCc
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDL-SVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDK 185 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~-~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~ 185 (592)
.-.|+|||||..|+-+|..|++. |. +|+++++.....
T Consensus 273 g~~VvViGgG~~g~e~A~~l~~~------G~~~Vtlv~~~~~~~------------------------------------ 310 (457)
T PRK11749 273 GKRVVVIGGGNTAMDAARTAKRL------GAESVTIVYRRGREE------------------------------------ 310 (457)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc------CCCeEEEeeecCccc------------------------------------
Confidence 35799999999999999999998 88 899999754210
Q ss_pred EEEeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccC---cccCCCCc
Q 007716 186 FWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDM---GIAKDGSK 262 (592)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~---g~~~~G~~ 262 (592)
++. . .. ..+.+++.||++++++.++++..++ +.+.+|++.++ ..+.+|..
T Consensus 311 -----------~~~----------~-~~----~~~~~~~~GV~i~~~~~v~~i~~~~-~~~~~v~~~~~~~~~~~~~g~~ 363 (457)
T PRK11749 311 -----------MPA----------S-EE----EVEHAKEEGVEFEWLAAPVEILGDE-GRVTGVEFVRMELGEPDASGRR 363 (457)
T ss_pred -----------CCC----------C-HH----HHHHHHHCCCEEEecCCcEEEEecC-CceEEEEEEEEEecCcCCCCCc
Confidence 000 0 01 2345667899999999999987655 33345544321 01223321
Q ss_pred cccc-ccceEEEcCEEEEecCCCCc
Q 007716 263 KENF-QRGVELRGRITLLAEGCRGS 286 (592)
Q Consensus 263 ~~~f-~~g~~i~a~~vI~A~G~~s~ 286 (592)
.... .++.++.+|.||.|.|..+.
T Consensus 364 ~~~~~g~~~~i~~D~vi~a~G~~p~ 388 (457)
T PRK11749 364 RVPIEGSEFTLPADLVIKAIGQTPN 388 (457)
T ss_pred ccCCCCceEEEECCEEEECccCCCC
Confidence 1000 12367999999999997654
No 349
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=97.41 E-value=0.00028 Score=79.97 Aligned_cols=38 Identities=42% Similarity=0.654 Sum_probs=36.1
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCC
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGA 150 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~ 150 (592)
-..|.|||.|||||+||-.|-+. |+.|+|+||.+.+|+
T Consensus 1785 g~~vaiigsgpaglaaadqlnk~------gh~v~vyer~dr~gg 1822 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKA------GHTVTVYERSDRVGG 1822 (2142)
T ss_pred CcEEEEEccCchhhhHHHHHhhc------CcEEEEEEecCCcCc
Confidence 47899999999999999999999 999999999999887
No 350
>PRK02106 choline dehydrogenase; Validated
Probab=97.40 E-value=0.00015 Score=81.13 Aligned_cols=69 Identities=16% Similarity=0.283 Sum_probs=47.2
Q ss_pred HHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCCCcchHHHHHHc
Q 007716 216 RWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSLSEKLIKNF 295 (592)
Q Consensus 216 ~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~vr~~l~~~~ 295 (592)
.+|.....+.+++|+.++.|++|+.++ +++++|++.+ .++. -..+.+|.||+|.|+-.+ -+|+-..
T Consensus 205 ~~l~~a~~~~nl~i~~~a~V~rI~~~~-~~a~GV~~~~----~~~~-------~~~~~ak~VILaaGai~T--P~LLl~S 270 (560)
T PRK02106 205 AYLDPALKRPNLTIVTHALTDRILFEG-KRAVGVEYER----GGGR-------ETARARREVILSAGAINS--PQLLQLS 270 (560)
T ss_pred HhhccccCCCCcEEEcCCEEEEEEEeC-CeEEEEEEEe----CCcE-------EEEEeeeeEEEccCCCCC--HHHHhhc
Confidence 344333334569999999999999985 6788998865 1222 145789999999998775 2333344
Q ss_pred CCC
Q 007716 296 KLR 298 (592)
Q Consensus 296 ~l~ 298 (592)
|+-
T Consensus 271 GIG 273 (560)
T PRK02106 271 GIG 273 (560)
T ss_pred CCC
Confidence 554
No 351
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.38 E-value=0.0012 Score=72.21 Aligned_cols=112 Identities=23% Similarity=0.280 Sum_probs=74.9
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCC-cEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCc
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDL-SVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDK 185 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~-~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~ 185 (592)
.-.|+|||+|..|+-+|..+.+. |. +|+|+++++...-
T Consensus 282 gk~VvVIGgG~~a~d~A~~a~~~------Ga~~Vtvv~r~~~~~~----------------------------------- 320 (467)
T TIGR01318 282 GKRVVVLGGGDTAMDCVRTAIRL------GAASVTCAYRRDEANM----------------------------------- 320 (467)
T ss_pred CCEEEEECCcHHHHHHHHHHHHc------CCCeEEEEEecCcccC-----------------------------------
Confidence 35799999999999999999988 86 6999998653210
Q ss_pred EEEeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccC---cccCCCCc
Q 007716 186 FWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDM---GIAKDGSK 262 (592)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~---g~~~~G~~ 262 (592)
+. ... ..+.+++.||++++++.++++..+++|.+.+|++..+ ..+.+|..
T Consensus 321 ------------~~----------~~~-----e~~~~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~ 373 (467)
T TIGR01318 321 ------------PG----------SRR-----EVANAREEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRR 373 (467)
T ss_pred ------------CC----------CHH-----HHHHHHhcCCEEEecCCcEEEEECCCCeEEEEEEEEEEecccCCCCCc
Confidence 00 001 1234567899999999999997765577777665321 12234432
Q ss_pred ccccc--cceEEEcCEEEEecCCCCc
Q 007716 263 KENFQ--RGVELRGRITLLAEGCRGS 286 (592)
Q Consensus 263 ~~~f~--~g~~i~a~~vI~A~G~~s~ 286 (592)
..... ...++.+|.||.|.|..+.
T Consensus 374 ~~~~~~g~~~~i~~D~Vi~a~G~~p~ 399 (467)
T TIGR01318 374 RPVPVAGSEFVLPADVVIMAFGFQPH 399 (467)
T ss_pred cceecCCceEEEECCEEEECCcCCCC
Confidence 11111 1357999999999996653
No 352
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=97.30 E-value=0.00076 Score=68.81 Aligned_cols=41 Identities=32% Similarity=0.310 Sum_probs=34.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCc
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAH 151 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~ 151 (592)
...|+|||+||||+-+|..|-+. .++++|.|+||.+.+.|-
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~----~~~~~Vdi~Ek~PvPFGL 60 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKR----HPNAHVDIFEKLPVPFGL 60 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhc----CCCCeeEeeecCCcccce
Confidence 34799999999999999988874 248999999999987763
No 353
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.21 E-value=0.0092 Score=63.83 Aligned_cols=42 Identities=29% Similarity=0.287 Sum_probs=35.4
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCc
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAH 151 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~ 151 (592)
.++=|||+|+|+|+||..|-|- -+-||-+|.|+|+....||.
T Consensus 3 ~~AyivGsGiAsLAAAvfLIrD--a~~pg~nIhIlE~~~~~GGs 44 (500)
T PF06100_consen 3 KKAYIVGSGIASLAAAVFLIRD--AKMPGENIHILEELDVPGGS 44 (500)
T ss_pred ceEEEECCCHHHHHhhhhhhcc--CCCCccceEEEeCCCCCCCc
Confidence 4577999999999999999886 34578899999998877664
No 354
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=97.19 E-value=0.0038 Score=69.93 Aligned_cols=66 Identities=17% Similarity=0.262 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCCCcc
Q 007716 211 LSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (592)
Q Consensus 211 ~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~v 287 (592)
...+...|.+++++.||+|+.++.+++++.+ +|+|+||...+ .++|+. ..+.|+.||+|||+.+.+
T Consensus 118 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~-~g~v~Ga~~~~---~~~g~~-------~~i~AkaVILATGG~~~~ 183 (565)
T TIGR01816 118 GHAILHTLYQQNLKADTSFFNEYFALDLLME-DGECRGVIAYC---LETGEI-------HRFRAKAVVLATGGYGRI 183 (565)
T ss_pred hHHHHHHHHHHHHhCCCEEEeccEEEEEEee-CCEEEEEEEEE---cCCCcE-------EEEEeCeEEECCCCcccc
Confidence 3578899999999999999999999999986 48899987643 123432 578999999999999863
No 355
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=97.19 E-value=0.0021 Score=66.77 Aligned_cols=130 Identities=22% Similarity=0.382 Sum_probs=82.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcC--------CCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeee
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKN--------VDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRV 179 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~--------~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~ 179 (592)
..+|||||||.|...|.+|+....+.. ..++|+++|..+.+ ++-+.
T Consensus 219 Lh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~i------------------L~mFd-------- 272 (491)
T KOG2495|consen 219 LHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHI------------------LNMFD-------- 272 (491)
T ss_pred EEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhH------------------HHHHH--------
Confidence 579999999999999999986532211 25678888866521 11111
Q ss_pred eccCCcEEEeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCC
Q 007716 180 PVSSDKFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKD 259 (592)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~ 259 (592)
..|..+-.++..+.|+++..++.|..+..++ +.+.. +|
T Consensus 273 --------------------------------krl~~yae~~f~~~~I~~~~~t~Vk~V~~~~------I~~~~----~~ 310 (491)
T KOG2495|consen 273 --------------------------------KRLVEYAENQFVRDGIDLDTGTMVKKVTEKT------IHAKT----KD 310 (491)
T ss_pred --------------------------------HHHHHHHHHHhhhccceeecccEEEeecCcE------EEEEc----CC
Confidence 3566666777777899999999998775432 33333 35
Q ss_pred CCcccccccceEEEcCEEEEecCCCCc-chHHHHHHcCCCcccccCcccceeeEEEEEeec
Q 007716 260 GSKKENFQRGVELRGRITLLAEGCRGS-LSEKLIKNFKLREKSHAQHQTYALGIKEVWEID 319 (592)
Q Consensus 260 G~~~~~f~~g~~i~a~~vI~A~G~~s~-vr~~l~~~~~l~~~~~~~~~~~~~g~~~~~~i~ 319 (592)
|+. .+|-.-.+|.|+|..+. +.+.|+. .++. ....++++.+..++.
T Consensus 311 g~~-------~~iPYG~lVWatG~~~rp~~k~lm~--~i~e-----~~rr~L~vDE~LrV~ 357 (491)
T KOG2495|consen 311 GEI-------EEIPYGLLVWATGNGPRPVIKDLMK--QIDE-----QGRRGLAVDEWLRVK 357 (491)
T ss_pred Cce-------eeecceEEEecCCCCCchhhhhHhh--cCCc-----cCceeeeeeceeecc
Confidence 654 67888999999998763 2344432 1221 113466666655544
No 356
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=97.13 E-value=0.0064 Score=63.99 Aligned_cols=71 Identities=14% Similarity=0.100 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCCCc----
Q 007716 211 LSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS---- 286 (592)
Q Consensus 211 ~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~---- 286 (592)
-..+...|...+++.||+|+++++|.+| ++ +. ..|.+.. .+..++||.||+|+|+.|.
T Consensus 85 A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~-~~-~~v~~~~--------------~~~~~~a~~vIlAtGG~s~p~~G 146 (376)
T TIGR03862 85 AAPLLRAWLKRLAEQGVQFHTRHRWIGW--QG-GT-LRFETPD--------------GQSTIEADAVVLALGGASWSQLG 146 (376)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCEEEEE--eC-Cc-EEEEECC--------------CceEEecCEEEEcCCCccccccC
Confidence 4789999999999999999999999998 22 22 3566542 1246999999999999752
Q ss_pred ---chHHHHHHcCCCc
Q 007716 287 ---LSEKLIKNFKLRE 299 (592)
Q Consensus 287 ---vr~~l~~~~~l~~ 299 (592)
-.-.+++++|...
T Consensus 147 s~g~gy~la~~lGh~i 162 (376)
T TIGR03862 147 SDGAWQQVLDQRGVSV 162 (376)
T ss_pred CCcHHHHHHHHCCCcc
Confidence 1235667778875
No 357
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.07 E-value=0.0061 Score=63.65 Aligned_cols=140 Identities=16% Similarity=0.205 Sum_probs=71.7
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCc---ccccCccChHHHHHhh--Hh-hhhcCCCeee
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAH---IISGNVFEPRALNELL--PQ-WKQEEAPIRV 179 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~---~~~g~~i~~~~l~~ll--~~-~~~~~~~~~~ 179 (592)
....|+|||||.++...+..|.+. .+..+|.++=|+...-.. ...-..+.|..++.+. +. .+.
T Consensus 189 ~~~~V~VVGgGQSAAEi~~~L~~~----~~~~~V~~i~R~~~~~~~d~s~f~ne~f~P~~v~~f~~l~~~~R~------- 257 (341)
T PF13434_consen 189 AGKRVAVVGGGQSAAEIFLDLLRR----GPEAKVTWISRSPGFFPMDDSPFVNEIFSPEYVDYFYSLPDEERR------- 257 (341)
T ss_dssp --EEEEEE-SSHHHHHHHHHHHHH-----TTEEEEEEESSSS-EB----CCHHGGGSHHHHHHHHTS-HHHHH-------
T ss_pred CCCeEEEECCcHhHHHHHHHHHhC----CCCcEEEEEECCCccCCCccccchhhhcCchhhhhhhcCCHHHHH-------
Confidence 457899999999999999999987 223589999987643211 1112345555443221 00 000
Q ss_pred eccCCcEEEeecCCcccCCCCCCCCCcEEEcHH---HHHHHHHHH-HHH-cCCEEecCceEEEEEEcCCCcEEEEEeccC
Q 007716 180 PVSSDKFWFLTKDRAFSLPSPFSNRGNYVISLS---QLVRWLGGK-AEE-LGVEIYPGFAASEILYDADNKVIGIGTNDM 254 (592)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~l~~~L~~~-a~~-~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~ 254 (592)
.++...... + .-.|+.. +|.+.|.++ +.. ..++|+.+++|+++..+++|.+ .+.+.+.
T Consensus 258 -------~~l~~~~~~-------n--y~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~-~l~~~~~ 320 (341)
T PF13434_consen 258 -------ELLREQRHT-------N--YGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGV-RLTLRHR 320 (341)
T ss_dssp -------HHHHHTGGG-------T--SSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSE-EEEEEET
T ss_pred -------HHHHHhHhh-------c--CCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEE-EEEEEEC
Confidence 000000000 0 1123332 233333332 222 2389999999999999886544 4555441
Q ss_pred cccCCCCcccccccceEEEcCEEEEecCC
Q 007716 255 GIAKDGSKKENFQRGVELRGRITLLAEGC 283 (592)
Q Consensus 255 g~~~~G~~~~~f~~g~~i~a~~vI~A~G~ 283 (592)
..|+ ..++.+|.||+|||-
T Consensus 321 ---~~~~-------~~~~~~D~VilATGy 339 (341)
T PF13434_consen 321 ---QTGE-------EETLEVDAVILATGY 339 (341)
T ss_dssp ---TT---------EEEEEESEEEE---E
T ss_pred ---CCCC-------eEEEecCEEEEcCCc
Confidence 2222 378899999999994
No 358
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=97.06 E-value=0.021 Score=61.27 Aligned_cols=54 Identities=20% Similarity=0.256 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEec
Q 007716 212 SQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAE 281 (592)
Q Consensus 212 ~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~ 281 (592)
++|.+.+.+.+.=.|..+..++.+.++..+++|.+.+|... |++++|+.||+..
T Consensus 232 GELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s~----------------ge~v~~k~vI~dp 285 (438)
T PF00996_consen 232 GELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKSE----------------GEVVKAKKVIGDP 285 (438)
T ss_dssp THHHHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEEET----------------TEEEEESEEEEEG
T ss_pred ccHHHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEecC----------------CEEEEcCEEEECC
Confidence 78888888888888999999999999999887888888763 5899999999543
No 359
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.03 E-value=0.0041 Score=70.74 Aligned_cols=111 Identities=24% Similarity=0.333 Sum_probs=74.4
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCC-cEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCc
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDL-SVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDK 185 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~-~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~ 185 (592)
.-.|+|||+|..|+-+|..+.++ |. +|++++++....-
T Consensus 451 gk~vvViGgG~~a~d~a~~~~~~------Ga~~Vt~v~rr~~~~~----------------------------------- 489 (639)
T PRK12809 451 GKRVVVLGGGDTTMDCLRTSIRL------NAASVTCAYRRDEVSM----------------------------------- 489 (639)
T ss_pred CCeEEEECCcHHHHHHHHHHHHc------CCCeEEEeeecCcccC-----------------------------------
Confidence 35799999999999999888887 85 7999987643210
Q ss_pred EEEeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccC---cccCCCCc
Q 007716 186 FWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDM---GIAKDGSK 262 (592)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~---g~~~~G~~ 262 (592)
+. ...++ ..+++.||++++++.++++..+++|.|.+|.+..+ ..+.+|..
T Consensus 490 ------------~~----------~~~e~-----~~a~~eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~ 542 (639)
T PRK12809 490 ------------PG----------SRKEV-----VNAREEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGRR 542 (639)
T ss_pred ------------CC----------CHHHH-----HHHHHcCCeEEeccCCEEEEECCCCeEEEEEEEEEEecCcCCCCCc
Confidence 00 00111 23566899999999999998766677877754321 12334543
Q ss_pred ccccccc--eEEEcCEEEEecCCCC
Q 007716 263 KENFQRG--VELRGRITLLAEGCRG 285 (592)
Q Consensus 263 ~~~f~~g--~~i~a~~vI~A~G~~s 285 (592)
.....+| .++.+|.||+|.|..+
T Consensus 543 ~~~~~~g~~~~i~aD~Vi~AiG~~p 567 (639)
T PRK12809 543 RPRPVAGSEFELPADVLIMAFGFQA 567 (639)
T ss_pred cceecCCceEEEECCEEEECcCCCC
Confidence 2222223 5789999999999654
No 360
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=97.03 E-value=0.00051 Score=76.31 Aligned_cols=37 Identities=51% Similarity=0.701 Sum_probs=33.7
Q ss_pred ccccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCC
Q 007716 104 ESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA 146 (592)
Q Consensus 104 ~~~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~ 146 (592)
..+++|+||||+|.+|.++|.+|+.. |++|+|||++.
T Consensus 4 ~~~~~D~vIVGsG~aG~~lA~rLs~~------g~~VllLEaG~ 40 (542)
T COG2303 4 MKMEYDYVIVGSGSAGSVLAARLSDA------GLSVLVLEAGG 40 (542)
T ss_pred ccCCCCEEEECCCchhHHHHHHhcCC------CCeEEEEeCCC
Confidence 34689999999999999999999966 99999999985
No 361
>PLN02976 amine oxidase
Probab=97.03 E-value=0.00067 Score=80.51 Aligned_cols=41 Identities=39% Similarity=0.680 Sum_probs=37.5
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcc
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI 152 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~ 152 (592)
..+||+|||||++|+++|+.|++. |++|+|||+...+||.+
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~------G~~V~VlEa~~~vGGri 732 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQ------GFSVTVLEARSRIGGRV 732 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHC------CCcEEEEeeccCCCCce
Confidence 458999999999999999999998 99999999998888764
No 362
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.02 E-value=0.005 Score=68.83 Aligned_cols=34 Identities=26% Similarity=0.411 Sum_probs=31.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCC
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA 146 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~ 146 (592)
.-+|+|||||..|+.+|..|++. |.+|+++++.+
T Consensus 143 g~~VvVIGgG~~g~E~A~~L~~~------g~~Vtli~~~~ 176 (555)
T TIGR03143 143 GMDVFVIGGGFAAAEEAVFLTRY------ASKVTVIVREP 176 (555)
T ss_pred CCEEEEECCCHHHHHHHHHHHcc------CCEEEEEEeCC
Confidence 35799999999999999999998 99999999875
No 363
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.00 E-value=0.0049 Score=72.73 Aligned_cols=112 Identities=19% Similarity=0.186 Sum_probs=73.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcE
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~ 186 (592)
.-+|+|||||..|+-+|..+.+. |.+|+++.++.... |..
T Consensus 447 Gk~VvVIGGG~tA~D~A~ta~R~------Ga~Vtlv~rr~~~~--------------------mpa-------------- 486 (944)
T PRK12779 447 GKEVFVIGGGNTAMDAARTAKRL------GGNVTIVYRRTKSE--------------------MPA-------------- 486 (944)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc------CCEEEEEEecCccc--------------------ccc--------------
Confidence 35799999999999999999999 99999998764200 000
Q ss_pred EEeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCC-CcEEEEEeccCc---ccCCCCc
Q 007716 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDAD-NKVIGIGTNDMG---IAKDGSK 262 (592)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~-g~v~~V~~~d~g---~~~~G~~ 262 (592)
....+ +.+.+.||+++++..++++..+++ +.|.+|.+..+. .+.+|..
T Consensus 487 -----------------------~~~e~-----~~a~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~ 538 (944)
T PRK12779 487 -----------------------RVEEL-----HHALEEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRR 538 (944)
T ss_pred -----------------------cHHHH-----HHHHHCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEeccccCcCce
Confidence 00122 224457999999999999976633 356666543211 1233432
Q ss_pred ccccc-cceEEEcCEEEEecCCCCc
Q 007716 263 KENFQ-RGVELRGRITLLAEGCRGS 286 (592)
Q Consensus 263 ~~~f~-~g~~i~a~~vI~A~G~~s~ 286 (592)
..... ...++.||.||+|.|..+.
T Consensus 539 ~~~~~G~e~~i~aD~VI~AiG~~p~ 563 (944)
T PRK12779 539 SPKPTGEIERVPVDLVIMALGNTAN 563 (944)
T ss_pred eeecCCceEEEECCEEEEcCCcCCC
Confidence 11111 1257999999999998875
No 364
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=96.95 E-value=0.006 Score=72.60 Aligned_cols=111 Identities=24% Similarity=0.366 Sum_probs=75.1
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCc-EEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCc
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLS-VCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDK 185 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~-V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~ 185 (592)
.-+|+|||||..|+-+|..+.++ |.+ |+++.+.....
T Consensus 571 Gk~VvVIGgG~tA~D~A~~a~rl------Ga~~Vtiv~rr~~~e------------------------------------ 608 (1006)
T PRK12775 571 GKSVVVIGAGNTAMDCLRVAKRL------GAPTVRCVYRRSEAE------------------------------------ 608 (1006)
T ss_pred CCEEEEECCcHHHHHHHHHHHHc------CCCEEEEEeecCccc------------------------------------
Confidence 46799999999999999999998 885 67776543210
Q ss_pred EEEeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCc---ccCCCCc
Q 007716 186 FWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMG---IAKDGSK 262 (592)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g---~~~~G~~ 262 (592)
++. ...+ .+.+++.||++++++.++++..+++|.|.+|++..+. .+.+|..
T Consensus 609 -----------m~a----------~~~e-----~~~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr~ 662 (1006)
T PRK12775 609 -----------APA----------RIEE-----IRHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDEKGRR 662 (1006)
T ss_pred -----------CCC----------CHHH-----HHHHHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEecccCCCCCc
Confidence 000 0011 2345668999999999999987666888888765321 1233432
Q ss_pred ccccccc--eEEEcCEEEEecCCCCc
Q 007716 263 KENFQRG--VELRGRITLLAEGCRGS 286 (592)
Q Consensus 263 ~~~f~~g--~~i~a~~vI~A~G~~s~ 286 (592)
...- +| .++.+|.||+|.|..+.
T Consensus 663 ~~~~-~g~~~~i~~D~Vi~AiG~~p~ 687 (1006)
T PRK12775 663 KPMP-TGEFKDLECDTVIYALGTKAN 687 (1006)
T ss_pred cccC-CCceEEEEcCEEEECCCcCCC
Confidence 1111 12 46999999999998876
No 365
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=96.88 E-value=0.0069 Score=69.01 Aligned_cols=111 Identities=19% Similarity=0.229 Sum_probs=68.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCC-cEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCc
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDL-SVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDK 185 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~-~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~ 185 (592)
.-.|+|||||..|+-+|..|.+. |. +|+|+++....-
T Consensus 323 gk~VvVIGgG~~a~e~A~~l~~~------Ga~~Vtlv~r~~~~~------------------------------------ 360 (652)
T PRK12814 323 GKKVVVIGGGNTAIDAARTALRL------GAESVTILYRRTREE------------------------------------ 360 (652)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc------CCCeEEEeeecCccc------------------------------------
Confidence 45799999999999999999998 86 599998765200
Q ss_pred EEEeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCc-EEEEEeccCcccCCCCccc
Q 007716 186 FWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNK-VIGIGTNDMGIAKDGSKKE 264 (592)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~-v~~V~~~d~g~~~~G~~~~ 264 (592)
++. ...++ +.+.+.||+|++++.++++..++++. +..+.+.....+.+|....
T Consensus 361 -----------mpa----------~~~ei-----~~a~~eGV~i~~~~~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~~~ 414 (652)
T PRK12814 361 -----------MPA----------NRAEI-----EEALAEGVSLRELAAPVSIERSEGGLELTAIKMQQGEPDESGRRRP 414 (652)
T ss_pred -----------CCC----------CHHHH-----HHHHHcCCcEEeccCcEEEEecCCeEEEEEEEEEecccCCCCCCcc
Confidence 000 00122 22335799999999999887655321 2222222211223343222
Q ss_pred ccccc--eEEEcCEEEEecCCCC
Q 007716 265 NFQRG--VELRGRITLLAEGCRG 285 (592)
Q Consensus 265 ~f~~g--~~i~a~~vI~A~G~~s 285 (592)
...+| .++.+|.||.|.|..+
T Consensus 415 ~~~~g~~~~i~~D~VI~AiG~~p 437 (652)
T PRK12814 415 VPVEGSEFTLQADTVISAIGQQV 437 (652)
T ss_pred eecCCceEEEECCEEEECCCCcC
Confidence 22223 4699999999999543
No 366
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=96.87 E-value=0.0036 Score=64.53 Aligned_cols=113 Identities=26% Similarity=0.374 Sum_probs=80.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEE-EEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcE
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVC-VVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~-vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~ 186 (592)
-.|-|||+|.-|..+|+.|++.. ++.|.+|. |+|.... +..++|
T Consensus 348 ~siTIiGnGflgSELacsl~rk~--r~~g~eV~QvF~Ek~n---------------m~kiLP------------------ 392 (659)
T KOG1346|consen 348 QSITIIGNGFLGSELACSLKRKY--RNEGVEVHQVFEEKYN---------------MEKILP------------------ 392 (659)
T ss_pred ceEEEEcCcchhhhHHHHHHHhh--hccCcEEEEeecccCC---------------hhhhhH------------------
Confidence 56999999999999999999862 22344443 3332211 111222
Q ss_pred EEeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCccccc
Q 007716 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (592)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f 266 (592)
.-|.+|-.+..++.||.++.+..|.++.....+ + .+++.|
T Consensus 393 -------------------------eyls~wt~ekir~~GV~V~pna~v~sv~~~~~n-l-~lkL~d------------- 432 (659)
T KOG1346|consen 393 -------------------------EYLSQWTIEKIRKGGVDVRPNAKVESVRKCCKN-L-VLKLSD------------- 432 (659)
T ss_pred -------------------------HHHHHHHHHHHHhcCceeccchhhhhhhhhccc-e-EEEecC-------------
Confidence 356677888889999999999999888777633 3 367766
Q ss_pred ccceEEEcCEEEEecCCCCcchHHHHHHcCCCc
Q 007716 267 QRGVELRGRITLLAEGCRGSLSEKLIKNFKLRE 299 (592)
Q Consensus 267 ~~g~~i~a~~vI~A~G~~s~vr~~l~~~~~l~~ 299 (592)
|++++.|+||+|.|..+. ..|++.-|++.
T Consensus 433 --G~~l~tD~vVvavG~ePN--~ela~~sgLei 461 (659)
T KOG1346|consen 433 --GSELRTDLVVVAVGEEPN--SELAEASGLEI 461 (659)
T ss_pred --CCeeeeeeEEEEecCCCc--hhhccccccee
Confidence 799999999999999886 35665666664
No 367
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=96.85 E-value=0.0062 Score=66.91 Aligned_cols=124 Identities=19% Similarity=0.188 Sum_probs=72.4
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcCCCC-cEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcE
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDL-SVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~~g~-~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~ 186 (592)
-.|+|||||..|+-+|..+.+. |. +|+++|..+....... ..+.++.|..
T Consensus 284 k~VvViGgG~~g~d~a~~a~~~------ga~~V~vv~~~~~~~~~~~---------~~~~~~~~~~-------------- 334 (485)
T TIGR01317 284 KKVVVIGGGDTGADCVGTSLRH------GAASVHQFEIMPKPPEARA---------KDNPWPEWPR-------------- 334 (485)
T ss_pred CEEEEECCcHHHHHHHHHHHHc------CCCEEEEEEecCCChhhcc---------cccCCCccch--------------
Confidence 5799999999999998888777 64 6999997654221000 0000011100
Q ss_pred EEeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEE-ecCceEEEEEEcCCCcEEEEEeccC--cccCCCCcc
Q 007716 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEI-YPGFAASEILYDADNKVIGIGTNDM--GIAKDGSKK 263 (592)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i-~~g~~v~~i~~~~~g~v~~V~~~d~--g~~~~G~~~ 263 (592)
..++...+.+..+..|+++ ++++.+.++..++++.+.+|.+..+ ..+.+|...
T Consensus 335 ------------------------~~e~~~a~~e~~~~~gv~~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~Gr~~ 390 (485)
T TIGR01317 335 ------------------------VYRVDYAHEEAAAHYGRDPREYSILTKEFIGDDEGKVTALRTVRVEWKKSQDGKWQ 390 (485)
T ss_pred ------------------------hhhhHHHHHhhhhhcCccceEEecCcEEEEEcCCCeEEEEEEEEEEeccCCCCCcc
Confidence 0122333444444467654 5688888887655577877765322 123455422
Q ss_pred cccccc--eEEEcCEEEEecCCC
Q 007716 264 ENFQRG--VELRGRITLLAEGCR 284 (592)
Q Consensus 264 ~~f~~g--~~i~a~~vI~A~G~~ 284 (592)
....+| .++.+|.||.|.|..
T Consensus 391 p~~~~g~~~~i~~D~Vi~AiG~~ 413 (485)
T TIGR01317 391 FVEIPGSEEVFEADLVLLAMGFV 413 (485)
T ss_pred ceecCCceEEEECCEEEEccCcC
Confidence 222222 479999999999954
No 368
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=96.83 E-value=0.0084 Score=71.55 Aligned_cols=104 Identities=19% Similarity=0.297 Sum_probs=75.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcCCCC-cEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcE
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDL-SVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~~g~-~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~ 186 (592)
-.|+|||+|+.|+.+|..|++. |. .|+|+|..+.+.
T Consensus 318 k~VvViG~G~~g~e~A~~L~~~------G~~vV~vv~~~~~~~------------------------------------- 354 (985)
T TIGR01372 318 KRIVVATNNDSAYRAAADLLAA------GIAVVAIIDARADVS------------------------------------- 354 (985)
T ss_pred CeEEEECCCHHHHHHHHHHHHc------CCceEEEEccCcchh-------------------------------------
Confidence 5799999999999999999998 85 578998654210
Q ss_pred EEeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCccccc
Q 007716 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (592)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f 266 (592)
..+.+.+++.||+|++++.++++..+ +.+.+|++.. .+|+
T Consensus 355 -----------------------------~~l~~~L~~~GV~i~~~~~v~~i~g~--~~v~~V~l~~----~~g~----- 394 (985)
T TIGR01372 355 -----------------------------PEARAEARELGIEVLTGHVVAATEGG--KRVSGVAVAR----NGGA----- 394 (985)
T ss_pred -----------------------------HHHHHHHHHcCCEEEcCCeEEEEecC--CcEEEEEEEe----cCCc-----
Confidence 01344566789999999999988643 3455666542 1122
Q ss_pred ccceEEEcCEEEEecCCCCcchHHHHHHcCCC
Q 007716 267 QRGVELRGRITLLAEGCRGSLSEKLIKNFKLR 298 (592)
Q Consensus 267 ~~g~~i~a~~vI~A~G~~s~vr~~l~~~~~l~ 298 (592)
+.++.+|.|+++.|..+.+ +|....+..
T Consensus 395 --~~~i~~D~V~va~G~~Pnt--~L~~~lg~~ 422 (985)
T TIGR01372 395 --GQRLEADALAVSGGWTPVV--HLFSQRGGK 422 (985)
T ss_pred --eEEEECCEEEEcCCcCchh--HHHHhcCCC
Confidence 4789999999999998863 455555543
No 369
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=96.64 E-value=0.013 Score=68.81 Aligned_cols=35 Identities=29% Similarity=0.344 Sum_probs=29.1
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCC-CcEEEEcCCC
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVD-LSVCVVEKGA 146 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g-~~V~vlEk~~ 146 (592)
.-.|||||||..|+-+|..+.+. .| .+|+|+.++.
T Consensus 668 GKrVVVIGGGnVAmD~Ar~a~Rl-----gGakeVTLVyRr~ 703 (1019)
T PRK09853 668 GKHVVVVGGGNTAMDAARAALRV-----PGVEKVTVVYRRT 703 (1019)
T ss_pred CCEEEEECCChHHHHHHHHHHhc-----CCCceEEEEEccC
Confidence 35799999999999999988876 24 3899999865
No 370
>PRK13984 putative oxidoreductase; Provisional
Probab=96.56 E-value=0.014 Score=66.14 Aligned_cols=63 Identities=24% Similarity=0.424 Sum_probs=40.9
Q ss_pred HHcCCEEecCceEEEEEEcCCCcEEEEEeccC--cccCCCCcccccc--cceEEEcCEEEEecCCCCc
Q 007716 223 EELGVEIYPGFAASEILYDADNKVIGIGTNDM--GIAKDGSKKENFQ--RGVELRGRITLLAEGCRGS 286 (592)
Q Consensus 223 ~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~--g~~~~G~~~~~f~--~g~~i~a~~vI~A~G~~s~ 286 (592)
.+.||+++++..++++..+ ++.+.+|.+.++ -.+.+|..+..+. ++.++.+|.||.|.|..+.
T Consensus 473 ~~~GV~i~~~~~~~~i~~~-~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~ 539 (604)
T PRK13984 473 LEEGVVIYPGWGPMEVVIE-NDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAPD 539 (604)
T ss_pred HHcCCEEEeCCCCEEEEcc-CCEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCCCC
Confidence 4579999999999888654 467777765421 1123343222111 1357999999999997764
No 371
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.45 E-value=0.012 Score=59.28 Aligned_cols=37 Identities=27% Similarity=0.370 Sum_probs=32.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCC
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVG 149 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g 149 (592)
..-|-|||||.||..||+.++++ |++|.++|-++.-+
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~------Gv~V~L~EMRp~k~ 39 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKR------GVPVILYEMRPVKG 39 (439)
T ss_pred CCceEEEcccccccHHHHHHHHc------CCcEEEEEcccccC
Confidence 34589999999999999999999 99999999876533
No 372
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=96.45 E-value=0.0084 Score=60.00 Aligned_cols=37 Identities=27% Similarity=0.427 Sum_probs=30.9
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCC
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA 146 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~ 146 (592)
.++.|+|||||.+|++.|..+.+.. +.=+|.|+|-..
T Consensus 38 ~h~kvLVvGGGsgGi~~A~k~~rkl----~~g~vgIvep~e 74 (446)
T KOG3851|consen 38 KHFKVLVVGGGSGGIGMAAKFYRKL----GSGSVGIVEPAE 74 (446)
T ss_pred cceEEEEEcCCcchhHHHHHHHhhc----CCCceEEecchh
Confidence 4799999999999999999998863 345799999654
No 373
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=96.35 E-value=0.0032 Score=68.95 Aligned_cols=39 Identities=36% Similarity=0.582 Sum_probs=35.0
Q ss_pred cccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCC
Q 007716 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEV 148 (592)
Q Consensus 105 ~~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~ 148 (592)
...||.||||||.||+.+|.+|++. |..+|+|+|++...
T Consensus 55 ~~~yDyIVVGgGtAGcvlAarLSEn-----~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 55 DSSYDYIVVGGGTAGCVLAARLSEN-----PNWSVLLLEAGGDP 93 (623)
T ss_pred ccCCCEEEECCCchhHHHHHhhccC-----CCceEEEEecCCCC
Confidence 3579999999999999999999996 68999999998754
No 374
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.03 Score=56.54 Aligned_cols=110 Identities=19% Similarity=0.226 Sum_probs=79.0
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcEE
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~~ 187 (592)
=.-+|||||..+|.+|-.|+-. |..|+|.=|+-.+.+ +.
T Consensus 199 GkTLvVGa~YVaLECAgFL~gf------g~~vtVmVRSI~LrG-------------------FD---------------- 237 (503)
T KOG4716|consen 199 GKTLVVGAGYVALECAGFLKGF------GYDVTVMVRSILLRG-------------------FD---------------- 237 (503)
T ss_pred CceEEEccceeeeehhhhHhhc------CCCcEEEEEEeeccc-------------------cc----------------
Confidence 3589999999999999999999 999999887643322 00
Q ss_pred EeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccc
Q 007716 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQ 267 (592)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~ 267 (592)
.++.+.+.+..++.|+.+...+-.+.++.-++|.. .|..... ..|+
T Consensus 238 ------------------------qdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l-~v~~k~t---~t~~------ 283 (503)
T KOG4716|consen 238 ------------------------QDMAELVAEHMEERGIKFLRKTVPERVEQIDDGKL-RVFYKNT---NTGE------ 283 (503)
T ss_pred ------------------------HHHHHHHHHHHHHhCCceeecccceeeeeccCCcE-EEEeecc---cccc------
Confidence 36677788888889999999988888888777764 3443321 1111
Q ss_pred cceEEEcCEEEEecCCCCcchHHHHHHcCCC
Q 007716 268 RGVELRGRITLLAEGCRGSLSEKLIKNFKLR 298 (592)
Q Consensus 268 ~g~~i~a~~vI~A~G~~s~vr~~l~~~~~l~ 298 (592)
+.+-..|.|+.|-|..+.++ ..+++
T Consensus 284 -~~~~~ydTVl~AiGR~~~~~-----~l~L~ 308 (503)
T KOG4716|consen 284 -EGEEEYDTVLWAIGRKALTD-----DLNLD 308 (503)
T ss_pred -cccchhhhhhhhhccccchh-----hcCCC
Confidence 23446899999999665543 35665
No 375
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=96.23 E-value=0.02 Score=60.52 Aligned_cols=44 Identities=18% Similarity=0.257 Sum_probs=36.1
Q ss_pred HHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCC
Q 007716 222 AEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCR 284 (592)
Q Consensus 222 a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~ 284 (592)
-++.|+++++++.|+.++..+. .|.+.+ |+.++.+.+|+|||+.
T Consensus 137 Yke~gIe~~~~t~v~~~D~~~K----~l~~~~---------------Ge~~kys~LilATGs~ 180 (478)
T KOG1336|consen 137 YKEKGIELILGTSVVKADLASK----TLVLGN---------------GETLKYSKLIIATGSS 180 (478)
T ss_pred HhhcCceEEEcceeEEeecccc----EEEeCC---------------CceeecceEEEeecCc
Confidence 3457999999999999988763 355554 7899999999999983
No 376
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=96.15 E-value=0.05 Score=64.19 Aligned_cols=35 Identities=29% Similarity=0.388 Sum_probs=29.3
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCC-cEEEEcCCC
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDL-SVCVVEKGA 146 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~-~V~vlEk~~ 146 (592)
.-.|+|||||..|+-+|..+.+. +|. +|+|++++.
T Consensus 666 GK~VVVIGGGnvAmD~Ar~a~Rl-----~Ga~kVtLVyRr~ 701 (1012)
T TIGR03315 666 GKHVVVVGGGNTAMDAARAALRV-----PGVEKVTVVYRRT 701 (1012)
T ss_pred CCeEEEECCCHHHHHHHHHHHHh-----CCCceEEEEEccC
Confidence 45799999999999999988875 365 799999765
No 377
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.12 E-value=0.052 Score=55.64 Aligned_cols=96 Identities=26% Similarity=0.347 Sum_probs=72.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcE
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~ 186 (592)
..||+|||||-+.+-.|+.|++. +-+|+++=|++....
T Consensus 143 ~k~v~ViGgG~sAve~Al~L~~~------a~~Vtlv~r~~~~ra------------------------------------ 180 (305)
T COG0492 143 GKDVVVIGGGDSAVEEALYLSKI------AKKVTLVHRRDEFRA------------------------------------ 180 (305)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHh------cCeEEEEecCcccCc------------------------------------
Confidence 34899999999999999999999 889999998875432
Q ss_pred EEeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHc-CCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccc
Q 007716 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKEN 265 (592)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~-Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~ 265 (592)
..++.+.+++. ++++++++.+.++.-++ +.+|++.+. + |+.
T Consensus 181 ----------------------------~~~~~~~l~~~~~i~~~~~~~i~ei~G~~---v~~v~l~~~---~-~~~--- 222 (305)
T COG0492 181 ----------------------------EEILVERLKKNVKIEVLTNTVVKEILGDD---VEGVVLKNV---K-GEE--- 222 (305)
T ss_pred ----------------------------CHHHHHHHHhcCCeEEEeCCceeEEecCc---cceEEEEec---C-Cce---
Confidence 12345555555 79999999999887553 556776651 1 332
Q ss_pred cccceEEEcCEEEEecCCCCc
Q 007716 266 FQRGVELRGRITLLAEGCRGS 286 (592)
Q Consensus 266 f~~g~~i~a~~vI~A~G~~s~ 286 (592)
.++..+-|+++-|..+.
T Consensus 223 ----~~~~~~gvf~~iG~~p~ 239 (305)
T COG0492 223 ----KELPVDGVFIAIGHLPN 239 (305)
T ss_pred ----EEEEeceEEEecCCCCc
Confidence 57889999999997665
No 378
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.11 E-value=0.019 Score=63.06 Aligned_cols=33 Identities=39% Similarity=0.572 Sum_probs=30.1
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCC
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA 146 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~ 146 (592)
..|+|||+|++|+++|..|++. |.+|+++|+.+
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~------G~~V~~~d~~~ 49 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLEL------GARVTVVDDGD 49 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCc
Confidence 3699999999999999999998 99999999764
No 379
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=96.01 E-value=0.042 Score=61.67 Aligned_cols=110 Identities=23% Similarity=0.236 Sum_probs=69.3
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCC-CcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCc
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVD-LSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDK 185 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g-~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~ 185 (592)
.-.|+|||+|..|+-.|..+.++ + .+|+|+.+.+...-
T Consensus 267 gk~v~ViGgg~~a~d~a~~a~~l------ga~~v~ii~r~~~~~~----------------------------------- 305 (564)
T PRK12771 267 GKRVVVIGGGNTAMDAARTARRL------GAEEVTIVYRRTREDM----------------------------------- 305 (564)
T ss_pred CCCEEEECChHHHHHHHHHHHHc------CCCEEEEEEecCcccC-----------------------------------
Confidence 45799999999999999888887 6 56888876642100
Q ss_pred EEEeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccC---cccCCCCc
Q 007716 186 FWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDM---GIAKDGSK 262 (592)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~---g~~~~G~~ 262 (592)
+. .... .+.+.+.||++++++.++++..++++.+ +|++..+ ..+++|..
T Consensus 306 ------------~~----------~~~~-----~~~a~~~GVki~~~~~~~~i~~~~~~~~-~v~~~~~~~~~~~~~g~~ 357 (564)
T PRK12771 306 ------------PA----------HDEE-----IEEALREGVEINWLRTPVEIEGDENGAT-GLRVITVEKMELDEDGRP 357 (564)
T ss_pred ------------CC----------CHHH-----HHHHHHcCCEEEecCCcEEEEcCCCCEE-EEEEEEEEecccCCCCCe
Confidence 00 0011 2234567999999999999977664543 5543221 11234432
Q ss_pred ccccccceEEEcCEEEEecCCCC
Q 007716 263 KENFQRGVELRGRITLLAEGCRG 285 (592)
Q Consensus 263 ~~~f~~g~~i~a~~vI~A~G~~s 285 (592)
...-....++.+|.||.|.|..+
T Consensus 358 ~~~~g~~~~i~~D~Vi~A~G~~p 380 (564)
T PRK12771 358 SPVTGEEETLEADLVVLAIGQDI 380 (564)
T ss_pred eecCCceEEEECCEEEECcCCCC
Confidence 11111125899999999999654
No 380
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=95.85 E-value=0.0087 Score=58.32 Aligned_cols=35 Identities=31% Similarity=0.490 Sum_probs=30.2
Q ss_pred EEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCC
Q 007716 110 VVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEV 148 (592)
Q Consensus 110 VvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~ 148 (592)
.+|||||+||.++|-.|+++ .|..+|+++-.++.+
T Consensus 2 fivvgggiagvscaeqla~~----~psa~illitass~v 36 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQL----EPSAEILLITASSFV 36 (334)
T ss_pred eEEEcCccccccHHHHHHhh----CCCCcEEEEeccHHH
Confidence 58999999999999999998 567889999876643
No 381
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=95.66 E-value=0.06 Score=62.72 Aligned_cols=68 Identities=13% Similarity=0.100 Sum_probs=47.5
Q ss_pred HHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcc---cCCCC------------cccccccceEEEcCEEEEecCC
Q 007716 219 GGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGI---AKDGS------------KKENFQRGVELRGRITLLAEGC 283 (592)
Q Consensus 219 ~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~---~~~G~------------~~~~f~~g~~i~a~~vI~A~G~ 283 (592)
.+.|.+.||++.++....+++.+++|.+.+|++..+-. +..|. +.+...+..++.||.||+|.|.
T Consensus 647 v~~A~eEGV~f~~~~~P~~i~~d~~g~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~ 726 (1028)
T PRK06567 647 LIYALALGVDFKENMQPLRINVDKYGHVESVEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGI 726 (1028)
T ss_pred HHHHHHcCcEEEecCCcEEEEecCCCeEEEEEEEEEecccccccccccccccccCCcCcccCCCccccccCCEEEEeccc
Confidence 34567789999999999999888778888888764320 01111 2222334478999999999996
Q ss_pred CCc
Q 007716 284 RGS 286 (592)
Q Consensus 284 ~s~ 286 (592)
...
T Consensus 727 ~~~ 729 (1028)
T PRK06567 727 ENN 729 (1028)
T ss_pred CCc
Confidence 653
No 382
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=95.63 E-value=0.053 Score=57.73 Aligned_cols=45 Identities=22% Similarity=0.319 Sum_probs=35.4
Q ss_pred HHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCCCcc
Q 007716 223 EELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (592)
Q Consensus 223 ~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~v 287 (592)
.+.++++..++.|+.+..... .|.+.+ | ++..|.+|+|+|++...
T Consensus 64 ~~~~i~~~~~~~v~~id~~~~----~v~~~~---------------g-~~~yd~LvlatGa~~~~ 108 (415)
T COG0446 64 RATGIDVRTGTEVTSIDPENK----VVLLDD---------------G-EIEYDYLVLATGARPRP 108 (415)
T ss_pred HhhCCEEeeCCEEEEecCCCC----EEEECC---------------C-cccccEEEEcCCCcccC
Confidence 346899999999999876652 366655 4 88999999999998754
No 383
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.56 E-value=0.035 Score=56.34 Aligned_cols=103 Identities=17% Similarity=0.158 Sum_probs=77.3
Q ss_pred cccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCC
Q 007716 105 SMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSD 184 (592)
Q Consensus 105 ~~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~ 184 (592)
.....++|||||..++..|--++.+ |.++.++=|...+-. .+.
T Consensus 187 e~Pkr~vvvGaGYIavE~Agi~~gL------gsethlfiR~~kvLR------------------~FD------------- 229 (478)
T KOG0405|consen 187 EQPKRVVVVGAGYIAVEFAGIFAGL------GSETHLFIRQEKVLR------------------GFD------------- 229 (478)
T ss_pred hcCceEEEEccceEEEEhhhHHhhc------CCeeEEEEecchhhc------------------chh-------------
Confidence 3457799999999999999999988 999998887764211 111
Q ss_pred cEEEeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCccc
Q 007716 185 KFWFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKE 264 (592)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~ 264 (592)
..+...+.++.+..|++++.++.++++....+|....+...
T Consensus 230 ---------------------------~~i~~~v~~~~~~~ginvh~~s~~~~v~K~~~g~~~~i~~~------------ 270 (478)
T KOG0405|consen 230 ---------------------------EMISDLVTEHLEGRGINVHKNSSVTKVIKTDDGLELVITSH------------ 270 (478)
T ss_pred ---------------------------HHHHHHHHHHhhhcceeecccccceeeeecCCCceEEEEec------------
Confidence 24445567778888999999999999998887754334433
Q ss_pred ccccceEEEcCEEEEecCCCCcc
Q 007716 265 NFQRGVELRGRITLLAEGCRGSL 287 (592)
Q Consensus 265 ~f~~g~~i~a~~vI~A~G~~s~v 287 (592)
|.....|.++.|.|..+..
T Consensus 271 ----~~i~~vd~llwAiGR~Pnt 289 (478)
T KOG0405|consen 271 ----GTIEDVDTLLWAIGRKPNT 289 (478)
T ss_pred ----cccccccEEEEEecCCCCc
Confidence 3455699999999987663
No 384
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=95.45 E-value=1.8 Score=46.19 Aligned_cols=55 Identities=18% Similarity=0.039 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCC
Q 007716 214 LVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCR 284 (592)
Q Consensus 214 l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~ 284 (592)
+.+.|.+.+++.|++|+++++|++|..++++..+.+. .+ |.++.||.||.|.-..
T Consensus 199 ~~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~~~~-~~---------------g~~~~~d~vi~a~p~~ 253 (419)
T TIGR03467 199 FPEPARRWLDSRGGEVRLGTRVRSIEANAGGIRALVL-SG---------------GETLPADAVVLAVPPR 253 (419)
T ss_pred HHHHHHHHHHHcCCEEEcCCeeeEEEEcCCcceEEEe-cC---------------CccccCCEEEEcCCHH
Confidence 3355788888889999999999999988754222222 22 4678999999987754
No 385
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=94.98 E-value=0.042 Score=59.86 Aligned_cols=34 Identities=15% Similarity=0.261 Sum_probs=30.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCC
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA 146 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~ 146 (592)
..+|+|||+|.+|+-.|..|++. +.+|+++.++.
T Consensus 204 gk~VvVVG~G~Sg~diA~~L~~~------a~~V~l~~r~~ 237 (461)
T PLN02172 204 NEVVVVIGNFASGADISRDIAKV------AKEVHIASRAS 237 (461)
T ss_pred CCEEEEECCCcCHHHHHHHHHHh------CCeEEEEEeec
Confidence 45799999999999999999998 88999999764
No 386
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.68 E-value=0.17 Score=51.41 Aligned_cols=76 Identities=29% Similarity=0.376 Sum_probs=58.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcE
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~ 186 (592)
..||+|||||-+|+.|||-|+-. =..|+++|=.+++.
T Consensus 354 gK~VAVIGGGNSGvEAAIDLAGi------v~hVtllEF~~eLk------------------------------------- 390 (520)
T COG3634 354 GKRVAVIGGGNSGVEAAIDLAGI------VEHVTLLEFAPELK------------------------------------- 390 (520)
T ss_pred CceEEEECCCcchHHHHHhHHhh------hheeeeeecchhhh-------------------------------------
Confidence 46899999999999999999977 55799999655432
Q ss_pred EEeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHc-CCEEecCceEEEEEEcCCCcEEEEEecc
Q 007716 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTND 253 (592)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~-Gv~i~~g~~v~~i~~~~~g~v~~V~~~d 253 (592)
-...|.+++..+ +|+|..+..-++|.-+. ..|.|+...|
T Consensus 391 ---------------------------AD~VLq~kl~sl~Nv~ii~na~Ttei~Gdg-~kV~Gl~Y~d 430 (520)
T COG3634 391 ---------------------------ADAVLQDKLRSLPNVTIITNAQTTEVKGDG-DKVTGLEYRD 430 (520)
T ss_pred ---------------------------hHHHHHHHHhcCCCcEEEecceeeEEecCC-ceecceEEEe
Confidence 133456666554 69999999998887665 4678888876
No 387
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=94.60 E-value=0.09 Score=54.57 Aligned_cols=58 Identities=24% Similarity=0.303 Sum_probs=46.0
Q ss_pred CcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCC
Q 007716 205 GNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCR 284 (592)
Q Consensus 205 ~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~ 284 (592)
.+|.|+..+|-. +..-||-+..|.+|+.|...+. -|+++| |.+|..|..++|||++
T Consensus 255 d~FfvspeDLp~-----~~nGGvAvl~G~kvvkid~~d~----~V~LnD---------------G~~I~YdkcLIATG~~ 310 (659)
T KOG1346|consen 255 DGFFVSPEDLPK-----AVNGGVAVLRGRKVVKIDEEDK----KVILND---------------GTTIGYDKCLIATGVR 310 (659)
T ss_pred CcceeChhHCcc-----cccCceEEEeccceEEeecccC----eEEecC---------------CcEeehhheeeecCcC
Confidence 466777776543 3446799999999999987653 377776 7999999999999999
Q ss_pred Cc
Q 007716 285 GS 286 (592)
Q Consensus 285 s~ 286 (592)
+.
T Consensus 311 Pk 312 (659)
T KOG1346|consen 311 PK 312 (659)
T ss_pred cc
Confidence 86
No 388
>PLN02852 ferredoxin-NADP+ reductase
Probab=94.48 E-value=0.55 Score=51.46 Aligned_cols=73 Identities=12% Similarity=0.083 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHH---------cCCEEecCceEEEEEEc--CCCcEEEEEeccCccc---CCCCccccc-ccceEEEcCEE
Q 007716 213 QLVRWLGGKAEE---------LGVEIYPGFAASEILYD--ADNKVIGIGTNDMGIA---KDGSKKENF-QRGVELRGRIT 277 (592)
Q Consensus 213 ~l~~~L~~~a~~---------~Gv~i~~g~~v~~i~~~--~~g~v~~V~~~d~g~~---~~G~~~~~f-~~g~~i~a~~v 277 (592)
...+.|.+.+.+ .++.+.+...-++|..+ ++++|.+|++..+... .+|.....- ..-.++.+|.|
T Consensus 267 r~~~~l~~~a~~~~~~~~~~~~~v~~~f~~sP~ei~~~~~~~~~v~~l~~~~~~l~~~~~~g~~~~~~tge~~~i~~D~V 346 (491)
T PLN02852 267 RVYELLSKAAAAGKCAPSGGQRELHFVFFRNPTRFLDSGDGNGHVAGVKLERTVLEGAAGSGKQVAVGTGEFEDLPCGLV 346 (491)
T ss_pred HHHHHHHHHHhhcccccCCCCceEEEEccCCCeEEEccCCCCCcEEEEEEEEeecCCCcccCCcccCCCCCEEEEECCEE
Confidence 456666665433 46889999888888743 2367888887643221 123221100 01247899999
Q ss_pred EEecCCCC
Q 007716 278 LLAEGCRG 285 (592)
Q Consensus 278 I~A~G~~s 285 (592)
|.|-|..+
T Consensus 347 i~aIG~~~ 354 (491)
T PLN02852 347 LKSIGYKS 354 (491)
T ss_pred EEeecCCC
Confidence 99999654
No 389
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=94.06 E-value=0.32 Score=54.42 Aligned_cols=113 Identities=19% Similarity=0.200 Sum_probs=70.4
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcE
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~ 186 (592)
...+||||.|++|..+.-.+..... .-..|+|+-.-+.+..... .|.+.+
T Consensus 3 k~klvvvGnGmag~r~iEell~~~~---~~~~iTvfg~Ep~~nY~Ri--------~Ls~vl------------------- 52 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESAP---DLYDITVFGEEPRPNYNRI--------LLSSVL------------------- 52 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcCc---ccceEEEeccCCCccccce--------eecccc-------------------
Confidence 3569999999999999998887411 1457777765544332110 000000
Q ss_pred EEeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCccccc
Q 007716 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (592)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f 266 (592)
..... ..++.-.-.+-.+++||+++.+.+|+.|..++. .|.+..
T Consensus 53 ---~~~~~----------------~edi~l~~~dwy~~~~i~L~~~~~v~~idr~~k----~V~t~~------------- 96 (793)
T COG1251 53 ---AGEKT----------------AEDISLNRNDWYEENGITLYTGEKVIQIDRANK----VVTTDA------------- 96 (793)
T ss_pred ---CCCcc----------------HHHHhccchhhHHHcCcEEEcCCeeEEeccCcc----eEEccC-------------
Confidence 00000 012211122334668999999999999987652 355554
Q ss_pred ccceEEEcCEEEEecCCCCcc
Q 007716 267 QRGVELRGRITLLAEGCRGSL 287 (592)
Q Consensus 267 ~~g~~i~a~~vI~A~G~~s~v 287 (592)
|.++..|.+|+|||+.+.+
T Consensus 97 --g~~~~YDkLilATGS~pfi 115 (793)
T COG1251 97 --GRTVSYDKLIIATGSYPFI 115 (793)
T ss_pred --CcEeecceeEEecCccccc
Confidence 6899999999999988764
No 390
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=94.05 E-value=0.2 Score=54.16 Aligned_cols=39 Identities=28% Similarity=0.152 Sum_probs=29.6
Q ss_pred cCCCEEEEcCCCcccCCCCccc-----hHHHHHHHHHHHHHHhh
Q 007716 413 VFPGGAIIGCAAGFLNVPKIKG-----THTAMKSGMLAAEAGFG 451 (592)
Q Consensus 413 ~~~~v~LiGDAA~~~~P~~g~G-----~~~Am~dg~~aA~~l~~ 451 (592)
..++++.+||++...++..|+. .+.|...|..+|+.|..
T Consensus 260 ~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~~a~ni~g 303 (427)
T TIGR03385 260 SVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAGENIAG 303 (427)
T ss_pred CCCCEEEeeeeEEeeeccCCCceeeechHHHHHHHHHHHHHhcC
Confidence 4589999999998776655432 46788888888888753
No 391
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=93.96 E-value=0.32 Score=50.58 Aligned_cols=59 Identities=15% Similarity=0.143 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCCCc
Q 007716 211 LSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGS 286 (592)
Q Consensus 211 ~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~ 286 (592)
.++|.+.+.+...=.|.++..+.++.++..+++|.+.+|+.++ ...+++ -|+|++...+
T Consensus 231 lgEL~QgFaRlsAvyGgTYMLn~pi~ei~~~~~gk~igvk~~~----------------~v~~~k-~vi~dpSY~~ 289 (440)
T KOG1439|consen 231 LGELPQGFARLSAVYGGTYMLNKPIDEINETKNGKVIGVKSGG----------------EVAKCK-KVICDPSYFP 289 (440)
T ss_pred cchhhHHHHHHhhccCceeecCCceeeeeccCCccEEEEecCC----------------ceeecc-eEEecCccch
Confidence 3678888877776689999999999999997668888887653 566777 6788887654
No 392
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=93.81 E-value=0.16 Score=56.38 Aligned_cols=34 Identities=24% Similarity=0.448 Sum_probs=28.9
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCC
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA 146 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~ 146 (592)
..+|+|||+|.+|.=.|..|++. ..+|.+.-|+.
T Consensus 183 gKrVlVVG~g~Sg~DIa~el~~~------a~~v~~s~R~~ 216 (531)
T PF00743_consen 183 GKRVLVVGGGNSGADIAVELSRV------AKKVYLSTRRG 216 (531)
T ss_dssp TSEEEEESSSHHHHHHHHHHTTT------SCCEEEECC--
T ss_pred CCEEEEEeCCHhHHHHHHHHHHh------cCCeEEEEecc
Confidence 46799999999999999999998 77898888764
No 393
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=92.97 E-value=0.14 Score=50.27 Aligned_cols=52 Identities=27% Similarity=0.540 Sum_probs=40.0
Q ss_pred cEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCC---------CCCcccccCccChHHHHHh
Q 007716 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAE---------VGAHIISGNVFEPRALNEL 166 (592)
Q Consensus 109 DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~---------~g~~~~~g~~i~~~~l~~l 166 (592)
+++|||+|..|.+.|..|.+. |..|+++|+... ...+...|...+++.|.++
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~------g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~a 62 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEE------GHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEA 62 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhC------CCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhc
Confidence 589999999999999999999 999999998753 2333445555666666443
No 394
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=92.76 E-value=0.14 Score=47.18 Aligned_cols=32 Identities=22% Similarity=0.310 Sum_probs=29.8
Q ss_pred cEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCC
Q 007716 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA 146 (592)
Q Consensus 109 DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~ 146 (592)
.|.|+|||..|.++|..|++. |.+|.++.+..
T Consensus 1 KI~ViGaG~~G~AlA~~la~~------g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN------GHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC------TEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHc------CCEEEEEeccH
Confidence 389999999999999999999 99999999865
No 395
>PLN02976 amine oxidase
Probab=92.68 E-value=2.7 Score=51.35 Aligned_cols=39 Identities=21% Similarity=-0.000 Sum_probs=30.1
Q ss_pred CCCEEEEcCCCcccCCCCccchHHHHHHHHHHHHHHhhhccC
Q 007716 414 FPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE 455 (592)
Q Consensus 414 ~~~v~LiGDAA~~~~P~~g~G~~~Am~dg~~aA~~l~~~~~~ 455 (592)
.++++++|++.+...|- =++-|+.+|..+|+.|...+..
T Consensus 1150 ggRLFFAGEATS~~~pG---TVHGAIeSG~RAA~eIL~~L~~ 1188 (1713)
T PLN02976 1150 ENCLFFAGEATCKEHPD---TVGGAMMSGLREAVRIIDILNT 1188 (1713)
T ss_pred CCcEEEEehhhhCCCcc---hHHHHHHHHHHHHHHHHHHHHc
Confidence 35799999997654443 4667999999999999887754
No 396
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.40 E-value=0.15 Score=55.75 Aligned_cols=34 Identities=26% Similarity=0.375 Sum_probs=31.0
Q ss_pred cEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCC
Q 007716 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEV 148 (592)
Q Consensus 109 DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~ 148 (592)
.|+|||.|++|+++|..|++. |++|++.|+....
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~------G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQ------GWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHC------CCEEEEECCCCch
Confidence 389999999999999999999 9999999987653
No 397
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=91.87 E-value=0.22 Score=46.94 Aligned_cols=32 Identities=22% Similarity=0.423 Sum_probs=27.8
Q ss_pred cEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCC
Q 007716 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA 146 (592)
Q Consensus 109 DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~ 146 (592)
.|.|||+|..|...|..+++. |++|+++|..+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~------G~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA------GYEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT------TSEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhC------CCcEEEEECCh
Confidence 389999999999999999999 99999999865
No 398
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=91.69 E-value=1.9 Score=45.23 Aligned_cols=65 Identities=12% Similarity=0.156 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHH---HcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCCCCcc
Q 007716 212 SQLVRWLGGKAE---ELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGCRGSL 287 (592)
Q Consensus 212 ~~l~~~L~~~a~---~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~~s~v 287 (592)
.++...|.++-. +..|.++.+++|+.++..++|.+ .+.+.. .++|++ .+++.|.||+|||-+-.+
T Consensus 275 ~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~g~~-~l~~~~---~~~~~~-------~t~~~D~vIlATGY~~~~ 342 (436)
T COG3486 275 EEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGDGRY-RLTLRH---HETGEL-------ETVETDAVILATGYRRAV 342 (436)
T ss_pred HHHHHHHHHHHhcCCCCCeeeccccceeeeecCCCceE-EEEEee---ccCCCc-------eEEEeeEEEEecccccCC
Confidence 455556666632 23588999999999999887763 566554 244553 789999999999988543
No 399
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=91.63 E-value=0.59 Score=51.46 Aligned_cols=39 Identities=38% Similarity=0.524 Sum_probs=36.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcc
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI 152 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~ 152 (592)
.||||||||++||+||+.|++. |++|+|+||+..+||.+
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~------G~~v~vlE~~~~~GG~~ 40 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKR------GYRVTLLEQHAQPGGCA 40 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHC------CCeEEEEecCCCCCCcc
Confidence 5899999999999999999999 99999999999988754
No 400
>COG2440 FixX Ferredoxin-like protein [Energy production and conversion]
Probab=91.51 E-value=0.058 Score=44.29 Aligned_cols=43 Identities=21% Similarity=0.407 Sum_probs=30.7
Q ss_pred ccccccCCCCCCCCCCcEEecCCCCccccCccCccCccccccCCCcCC
Q 007716 545 TSLHRSNTNHEHDQPAHLRLRDPKIPELVNLPEYAGPESRYCPARVYE 592 (592)
Q Consensus 545 ~~~~~~~~~h~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~cp~~vy~ 592 (592)
..+++-. .+-+.+-.||.++|+.++.+.+ +.|+..-||||+|+
T Consensus 11 ~kL~~n~-~~vDe~~pHI~v~~~~~~~~~~----~~~l~~aCPA~~Y~ 53 (99)
T COG2440 11 EKLSVNR-YNVDEDHPHIIVKDPDDCQECE----DKPLIKACPAGCYK 53 (99)
T ss_pred Hhhhhhe-eeccCCCCcEecCCchhhhhcc----chhhhhcCCHHHee
Confidence 4444533 4433444699999988776554 77999999999996
No 401
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=91.26 E-value=0.22 Score=47.20 Aligned_cols=33 Identities=27% Similarity=0.385 Sum_probs=26.9
Q ss_pred cEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCC
Q 007716 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAE 147 (592)
Q Consensus 109 DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~ 147 (592)
.|.|||.|..||.+|..|++. |++|+.+|..+.
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~------G~~V~g~D~~~~ 34 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEK------GHQVIGVDIDEE 34 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHT------TSEEEEE-S-HH
T ss_pred EEEEECCCcchHHHHHHHHhC------CCEEEEEeCChH
Confidence 489999999999999999999 999999997763
No 402
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=91.23 E-value=0.36 Score=41.55 Aligned_cols=49 Identities=35% Similarity=0.601 Sum_probs=36.0
Q ss_pred EEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCC-------CCCcccccCccChHHHH
Q 007716 110 VVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAE-------VGAHIISGNVFEPRALN 164 (592)
Q Consensus 110 VvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~-------~g~~~~~g~~i~~~~l~ 164 (592)
|+|||.|..|...|..|.+. +.+|+++|+.+. .|.....|...++..|.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~------~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~ 56 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG------GIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLE 56 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT------TSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHH
T ss_pred eEEEcCCHHHHHHHHHHHhC------CCEEEEEECCcHHHHHHHhcccccccccchhhhHHh
Confidence 79999999999999999997 889999998763 23334455555555553
No 403
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=91.03 E-value=1.3 Score=46.73 Aligned_cols=38 Identities=24% Similarity=0.219 Sum_probs=30.7
Q ss_pred ccccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCC
Q 007716 104 ESMAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAE 147 (592)
Q Consensus 104 ~~~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~ 147 (592)
......|||+|.|-+|.++.-.|-.. -.+|+|+..+..
T Consensus 52 ~~kKk~vVVLGsGW~a~S~lk~ldts------~YdV~vVSPRny 89 (491)
T KOG2495|consen 52 GGKKKRVVVLGSGWGAISLLKKLDTS------LYDVTVVSPRNY 89 (491)
T ss_pred CCCCceEEEEcCchHHHHHHHhcccc------ccceEEeccccc
Confidence 34567899999999999988877766 789999986653
No 404
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=90.93 E-value=0.33 Score=44.05 Aligned_cols=31 Identities=35% Similarity=0.529 Sum_probs=28.9
Q ss_pred EEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCC
Q 007716 110 VVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA 146 (592)
Q Consensus 110 VvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~ 146 (592)
|+|+|+|-.|+..|..|++. |.+|.++-|..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~------g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA------GHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT------TCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHC------CCceEEEEccc
Confidence 68999999999999999998 99999999764
No 405
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=90.80 E-value=0.33 Score=45.15 Aligned_cols=34 Identities=35% Similarity=0.400 Sum_probs=29.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCC
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA 146 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~ 146 (592)
...|+|+|+|.+|..||..|..+ |++|+++|...
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~l------Ga~v~~~d~~~ 53 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGL------GAEVVVPDERP 53 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHT------T-EEEEEESSH
T ss_pred CeEEEEECCCHHHHHHHHHHhHC------CCEEEeccCCH
Confidence 46799999999999999999999 99999999764
No 406
>PLN02268 probable polyamine oxidase
Probab=90.78 E-value=7 Score=42.17 Aligned_cols=40 Identities=18% Similarity=0.322 Sum_probs=32.1
Q ss_pred CCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecC
Q 007716 226 GVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEG 282 (592)
Q Consensus 226 Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G 282 (592)
+++|++++.|++|..++++ + .|++.+ |.++.||.||+|.-
T Consensus 210 ~~~i~~~~~V~~i~~~~~~-v-~v~~~~---------------g~~~~ad~VIva~P 249 (435)
T PLN02268 210 GLDIRLNHRVTKIVRRYNG-V-KVTVED---------------GTTFVADAAIIAVP 249 (435)
T ss_pred cCceeCCCeeEEEEEcCCc-E-EEEECC---------------CcEEEcCEEEEecC
Confidence 6789999999999987755 3 466654 56799999999974
No 407
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=90.16 E-value=0.29 Score=53.61 Aligned_cols=34 Identities=29% Similarity=0.363 Sum_probs=30.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCC
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA 146 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~ 146 (592)
.-.|+|+|+|++|+.++..++.. |.+|+++|.++
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~l------GA~V~a~D~~~ 198 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSL------GAIVRAFDTRP 198 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC------CCEEEEEeCCH
Confidence 56799999999999999999888 99999999875
No 408
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=89.92 E-value=0.47 Score=45.76 Aligned_cols=33 Identities=24% Similarity=0.315 Sum_probs=29.9
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCC
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA 146 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~ 146 (592)
..|+|||||..|...|..|.+. |.+|+|+....
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~------ga~VtVvsp~~ 42 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKA------GAQLRVIAEEL 42 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHC------CCEEEEEcCCC
Confidence 4699999999999999999998 99999998643
No 409
>PLN02568 polyamine oxidase
Probab=89.90 E-value=7.5 Score=43.37 Aligned_cols=53 Identities=13% Similarity=0.148 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCcccccccceEEEcCEEEEecCC
Q 007716 212 SQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENFQRGVELRGRITLLAEGC 283 (592)
Q Consensus 212 ~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f~~g~~i~a~~vI~A~G~ 283 (592)
..|.+.|.+.+. +.+|++++.|+.|..++++ + .|++.+ |.++.||.||+|.-.
T Consensus 242 ~~Li~~La~~L~--~~~I~ln~~V~~I~~~~~~-v-~V~~~d---------------G~~~~aD~VIvTvPl 294 (539)
T PLN02568 242 LSVIEALASVLP--PGTIQLGRKVTRIEWQDEP-V-KLHFAD---------------GSTMTADHVIVTVSL 294 (539)
T ss_pred HHHHHHHHhhCC--CCEEEeCCeEEEEEEeCCe-E-EEEEcC---------------CCEEEcCEEEEcCCH
Confidence 457777776652 3469999999999987644 3 466655 567999999998863
No 410
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=89.81 E-value=0.38 Score=50.87 Aligned_cols=34 Identities=29% Similarity=0.410 Sum_probs=30.9
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCC
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA 146 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~ 146 (592)
..+|+|||+|.+|+.+|..|++. |.+|+++++..
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~l------Ga~V~v~d~~~ 200 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGL------GATVTILDINI 200 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHC------CCeEEEEECCH
Confidence 45799999999999999999999 99999999764
No 411
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.56 E-value=0.42 Score=51.96 Aligned_cols=34 Identities=35% Similarity=0.508 Sum_probs=31.1
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCC
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA 146 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~ 146 (592)
...|+|||+|.+|+++|..|++. |.+|+++|+..
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~------G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKL------GAKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCc
Confidence 35699999999999999999999 99999999864
No 412
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=89.32 E-value=0.39 Score=49.43 Aligned_cols=33 Identities=27% Similarity=0.338 Sum_probs=30.6
Q ss_pred cEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCC
Q 007716 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAE 147 (592)
Q Consensus 109 DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~ 147 (592)
+|.|||+|..|.+.|..|++. |.+|+++|+.+.
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~------G~~V~v~d~~~~ 36 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARA------GHEVRLWDADPA 36 (308)
T ss_pred EEEEECccHHHHHHHHHHHHC------CCeeEEEeCCHH
Confidence 599999999999999999998 999999998753
No 413
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=89.28 E-value=1.3 Score=42.48 Aligned_cols=98 Identities=19% Similarity=0.301 Sum_probs=70.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcEE
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~~ 187 (592)
.-.+|||||=+-+.-|..|.+. +-+|.||-|++...+
T Consensus 158 k~laVIGGGDsA~EEA~fLtky------askVyii~Rrd~fRA------------------------------------- 194 (322)
T KOG0404|consen 158 KPLAVIGGGDSAMEEALFLTKY------ASKVYIIHRRDHFRA------------------------------------- 194 (322)
T ss_pred CeeEEEcCcHHHHHHHHHHHhh------ccEEEEEEEhhhhhH-------------------------------------
Confidence 3488999999999999999999 999999998875432
Q ss_pred EeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHc-CCEEecCceEEEEEEcCCCcEEEEEeccCcccCCCCccccc
Q 007716 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEEL-GVEIYPGFAASEILYDADNKVIGIGTNDMGIAKDGSKKENF 266 (592)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~-Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~~~G~~~~~f 266 (592)
...|.+++++. ++++++++.+++..-+. +.+.+++..+ -+.|+.
T Consensus 195 ---------------------------s~~Mq~ra~~npnI~v~~nt~~~ea~gd~-~~l~~l~ikn---~~tge~---- 239 (322)
T KOG0404|consen 195 ---------------------------SKIMQQRAEKNPNIEVLYNTVAVEALGDG-KLLNGLRIKN---VKTGEE---- 239 (322)
T ss_pred ---------------------------HHHHHHHHhcCCCeEEEechhhhhhccCc-ccccceEEEe---cccCcc----
Confidence 22356666654 58999998887765542 3344455444 133433
Q ss_pred ccceEEEcCEEEEecCCCCc
Q 007716 267 QRGVELRGRITLLAEGCRGS 286 (592)
Q Consensus 267 ~~g~~i~a~~vI~A~G~~s~ 286 (592)
..+..+-+..|-|..+.
T Consensus 240 ---~dl~v~GlFf~IGH~Pa 256 (322)
T KOG0404|consen 240 ---TDLPVSGLFFAIGHSPA 256 (322)
T ss_pred ---cccccceeEEEecCCch
Confidence 67889999999997654
No 414
>KOG2403 consensus Succinate dehydrogenase, flavoprotein subunit [Energy production and conversion]
Probab=89.08 E-value=0.55 Score=50.80 Aligned_cols=41 Identities=41% Similarity=0.530 Sum_probs=34.5
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcc
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI 152 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~ 152 (592)
..||.+|||+|-||+.+|..|++. |.++.++-|-.....+.
T Consensus 54 ~~~da~vvgaggAGlr~~~~lae~------g~~~a~itkl~p~~s~t 94 (642)
T KOG2403|consen 54 HTYDAVVVGAGGAGLRAARGLAEL------GEKTAVITKLFPTRSHT 94 (642)
T ss_pred eeceeEEEeccchhhhhhhhhhhc------CceEEEEeccccccccc
Confidence 349999999999999999999999 99999998765444433
No 415
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=88.89 E-value=0.31 Score=41.37 Aligned_cols=34 Identities=26% Similarity=0.359 Sum_probs=29.9
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCC
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA 146 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~ 146 (592)
...|+|||||..|..-+..|.+. |.+|+|+.+..
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~------gA~v~vis~~~ 40 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEA------GAKVTVISPEI 40 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCC------TBEEEEEESSE
T ss_pred CCEEEEECCCHHHHHHHHHHHhC------CCEEEEECCch
Confidence 46699999999999999999998 99999998763
No 416
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=88.79 E-value=0.43 Score=45.42 Aligned_cols=34 Identities=29% Similarity=0.431 Sum_probs=28.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCC
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA 146 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~ 146 (592)
...|+|||+|.++.-+|..|++. |.+|+++=|++
T Consensus 167 ~k~V~VVG~G~SA~d~a~~l~~~------g~~V~~~~R~~ 200 (203)
T PF13738_consen 167 GKRVVVVGGGNSAVDIAYALAKA------GKSVTLVTRSP 200 (203)
T ss_dssp TSEEEEE--SHHHHHHHHHHTTT------CSEEEEEESS-
T ss_pred CCcEEEEcChHHHHHHHHHHHhh------CCEEEEEecCC
Confidence 46799999999999999999999 99999998875
No 417
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=88.45 E-value=0.37 Score=48.53 Aligned_cols=35 Identities=26% Similarity=0.370 Sum_probs=32.0
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCC
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA 146 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~ 146 (592)
..-+|+|||||.+|.-+|.-+... |.+|+|+|.+.
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~gl------gA~Vtild~n~ 201 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGL------GADVTILDLNI 201 (371)
T ss_pred CCccEEEECCccccchHHHHHhcc------CCeeEEEecCH
Confidence 457899999999999999999999 99999999874
No 418
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=88.44 E-value=0.53 Score=51.27 Aligned_cols=111 Identities=19% Similarity=0.177 Sum_probs=75.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcEE
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKFW 187 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~~ 187 (592)
-.|+|||||..|+-+|..|++. |.+|+|+++..... +..
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~------G~~Vtlv~~~~~~~--------------------~~~--------------- 311 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRL------GAEVHCLYRRTRED--------------------MTA--------------- 311 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHc------CCEEEEEeecCccc--------------------CCC---------------
Confidence 5799999999999999999999 99999999875210 000
Q ss_pred EeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCc---ccCCCCccc
Q 007716 188 FLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMG---IAKDGSKKE 264 (592)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g---~~~~G~~~~ 264 (592)
.....+.+++.||++++++.++++..+++|.+.+|.+..+. .+.+|....
T Consensus 312 ---------------------------~~~~~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~ 364 (449)
T TIGR01316 312 ---------------------------RVEEIAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRF 364 (449)
T ss_pred ---------------------------CHHHHHHHHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeee
Confidence 00123445678999999999999987666777777664211 122332111
Q ss_pred cc--ccceEEEcCEEEEecCCCCc
Q 007716 265 NF--QRGVELRGRITLLAEGCRGS 286 (592)
Q Consensus 265 ~f--~~g~~i~a~~vI~A~G~~s~ 286 (592)
.. ....++.+|.||.|.|..+.
T Consensus 365 ~~~~~~~~~i~~D~Vi~AiG~~p~ 388 (449)
T TIGR01316 365 LPCGDAECKLEADAVIVAIGNGSN 388 (449)
T ss_pred eecCCceEEEECCEEEECCCCCCC
Confidence 11 11247899999999996543
No 419
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=88.42 E-value=0.48 Score=42.42 Aligned_cols=32 Identities=34% Similarity=0.390 Sum_probs=27.8
Q ss_pred EEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCC
Q 007716 110 VVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAE 147 (592)
Q Consensus 110 VvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~ 147 (592)
++|+|+|+.+.+.|..++.. |++|+|+|.+++
T Consensus 1 L~I~GaG~va~al~~la~~l------g~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALL------GFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHC------TEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhC------CCEEEEEcCCcc
Confidence 58999999999999999999 999999998764
No 420
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=88.41 E-value=0.67 Score=42.64 Aligned_cols=31 Identities=35% Similarity=0.358 Sum_probs=28.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEc
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVE 143 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlE 143 (592)
.-.|+|||||..|..-|..|.+. |.+|+|+.
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~~------ga~V~VIs 43 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKDT------GAFVTVVS 43 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC------CCEEEEEc
Confidence 35699999999999999999998 99999995
No 421
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=88.33 E-value=0.53 Score=49.16 Aligned_cols=33 Identities=24% Similarity=0.442 Sum_probs=30.5
Q ss_pred cEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCC
Q 007716 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAE 147 (592)
Q Consensus 109 DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~ 147 (592)
+|.|||.|..||+.|..|++. |++|+.+|....
T Consensus 2 kI~viGtGYVGLv~g~~lA~~------GHeVv~vDid~~ 34 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAEL------GHEVVCVDIDES 34 (414)
T ss_pred ceEEECCchHHHHHHHHHHHc------CCeEEEEeCCHH
Confidence 589999999999999999999 999999998753
No 422
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=88.17 E-value=0.6 Score=47.98 Aligned_cols=33 Identities=30% Similarity=0.350 Sum_probs=30.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCC
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA 146 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~ 146 (592)
.+|+|||+|..|...|..|++. |.+|+++.|+.
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~------G~~V~lv~r~~ 35 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARA------GLPVRLILRDR 35 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhC------CCCeEEEEech
Confidence 4699999999999999999998 99999999864
No 423
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=88.10 E-value=0.57 Score=50.01 Aligned_cols=34 Identities=26% Similarity=0.287 Sum_probs=30.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCC
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA 146 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~ 146 (592)
.-.|+|+|+|+.|+.+|..|+.. |.+|+++|..+
T Consensus 202 GktVvViG~G~IG~~va~~ak~~------Ga~ViV~d~d~ 235 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRGQ------GARVIVTEVDP 235 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC------CCEEEEEECCh
Confidence 45699999999999999999998 99999999765
No 424
>PRK12831 putative oxidoreductase; Provisional
Probab=87.90 E-value=0.58 Score=51.16 Aligned_cols=112 Identities=23% Similarity=0.247 Sum_probs=75.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcE
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~ 186 (592)
.-+|+|||||..|+-+|..|.++ |.+|+|+++..... +
T Consensus 281 gk~VvVIGgG~va~d~A~~l~r~------Ga~Vtlv~r~~~~~--------------------m---------------- 318 (464)
T PRK12831 281 GKKVAVVGGGNVAMDAARTALRL------GAEVHIVYRRSEEE--------------------L---------------- 318 (464)
T ss_pred CCeEEEECCcHHHHHHHHHHHHc------CCEEEEEeecCccc--------------------C----------------
Confidence 35799999999999999999999 99999999765210 0
Q ss_pred EEeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCc---ccCCCCcc
Q 007716 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMG---IAKDGSKK 263 (592)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g---~~~~G~~~ 263 (592)
+. ...+ .+.+++.||++++++.++++..+++|.+.+|.+..+. .+.+|...
T Consensus 319 -----------~a----------~~~e-----~~~a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~ 372 (464)
T PRK12831 319 -----------PA----------RVEE-----VHHAKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRR 372 (464)
T ss_pred -----------CC----------CHHH-----HHHHHHcCCEEEecccceEEEecCCCeEEEEEEEEEEecCcCCCCCcc
Confidence 00 0011 1335568999999999999987666777777664221 12344322
Q ss_pred cccccc--eEEEcCEEEEecCCCCc
Q 007716 264 ENFQRG--VELRGRITLLAEGCRGS 286 (592)
Q Consensus 264 ~~f~~g--~~i~a~~vI~A~G~~s~ 286 (592)
....+| .++.+|.||.|.|..+.
T Consensus 373 ~~~~~g~~~~i~~D~Vi~AiG~~p~ 397 (464)
T PRK12831 373 PVEIEGSEFVLEVDTVIMSLGTSPN 397 (464)
T ss_pred ceecCCceEEEECCEEEECCCCCCC
Confidence 111122 36899999999996653
No 425
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.76 E-value=0.58 Score=48.72 Aligned_cols=41 Identities=22% Similarity=0.274 Sum_probs=37.7
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCcc
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHI 152 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~ 152 (592)
.+|||||||-|..-...|.+.++. |.+|+=+|+++..|++.
T Consensus 7 ~~fDvVViGTGlpESilAAAcSrs------G~sVLHlDsn~yYGg~w 47 (547)
T KOG4405|consen 7 EEFDVVVIGTGLPESILAAACSRS------GSSVLHLDSNEYYGGNW 47 (547)
T ss_pred hhccEEEEcCCCcHHHHHHHhhhc------CCceEeccCccccCCcc
Confidence 479999999999999999999998 99999999999888864
No 426
>PLN02529 lysine-specific histone demethylase 1
Probab=87.44 E-value=19 Score=41.66 Aligned_cols=37 Identities=22% Similarity=0.009 Sum_probs=29.4
Q ss_pred CCCEEEEcCCCcccCCCCccchHHHHHHHHHHHHHHhhhc
Q 007716 414 FPGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVL 453 (592)
Q Consensus 414 ~~~v~LiGDAA~~~~P~~g~G~~~Am~dg~~aA~~l~~~~ 453 (592)
.++++++||+.....|- =++-|+.||..+|+.|.+.+
T Consensus 562 ~grL~FAGEaTs~~~pg---tVeGAi~SG~RAA~eIl~~l 598 (738)
T PLN02529 562 SGRLFFAGEATTRQYPA---TMHGAFLSGLREASRILHVA 598 (738)
T ss_pred CCCEEEEEHHHhCCCCe---EeHHHHHHHHHHHHHHHHHH
Confidence 46999999997665443 45669999999999988755
No 427
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=87.42 E-value=0.81 Score=43.99 Aligned_cols=33 Identities=30% Similarity=0.372 Sum_probs=29.4
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCC
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKG 145 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~ 145 (592)
...|+|||||-.|...|..|.+. |.+|+|+++.
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~------ga~V~VIs~~ 42 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKY------GAHIVVISPE 42 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC------CCeEEEEcCC
Confidence 35699999999999999999998 9999999853
No 428
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.37 E-value=0.66 Score=47.21 Aligned_cols=32 Identities=22% Similarity=0.337 Sum_probs=29.7
Q ss_pred cEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCC
Q 007716 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA 146 (592)
Q Consensus 109 DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~ 146 (592)
.|.|||+|..|.+.|..|++. |.+|+++|+..
T Consensus 5 kIaViGaG~mG~~iA~~la~~------G~~V~l~d~~~ 36 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFH------GFDVTIYDISD 36 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhc------CCeEEEEeCCH
Confidence 599999999999999999998 99999999764
No 429
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=87.06 E-value=1 Score=40.15 Aligned_cols=34 Identities=26% Similarity=0.439 Sum_probs=30.4
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCc-EEEEcCCC
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLS-VCVVEKGA 146 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~-V~vlEk~~ 146 (592)
...|+|||+|-+|-+++..|++. |.+ |+|+-|..
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~------g~~~i~i~nRt~ 46 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAAL------GAKEITIVNRTP 46 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHT------TSSEEEEEESSH
T ss_pred CCEEEEECCHHHHHHHHHHHHHc------CCCEEEEEECCH
Confidence 46799999999999999999999 988 99999753
No 430
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=87.01 E-value=0.84 Score=47.09 Aligned_cols=33 Identities=18% Similarity=0.229 Sum_probs=30.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCC
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA 146 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~ 146 (592)
..|+|||+|-.|...|..|++. |.+|+++.|+.
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~------g~~V~~~~r~~ 38 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARA------GFDVHFLLRSD 38 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHC------CCeEEEEEeCC
Confidence 4699999999999999999998 99999998864
No 431
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=86.68 E-value=0.81 Score=47.72 Aligned_cols=32 Identities=22% Similarity=0.368 Sum_probs=29.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCC
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKG 145 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~ 145 (592)
.+|.|||+|..|...|..|++. |.+|+++++.
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~------G~~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAA------GADVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhc------CCcEEEEecH
Confidence 4699999999999999999998 9999999974
No 432
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.67 E-value=0.72 Score=46.97 Aligned_cols=32 Identities=25% Similarity=0.348 Sum_probs=29.8
Q ss_pred cEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCC
Q 007716 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA 146 (592)
Q Consensus 109 DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~ 146 (592)
.|.|||+|..|...|..|++. |.+|+++|+.+
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~------G~~V~~~d~~~ 34 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVS------GFQTTLVDIKQ 34 (288)
T ss_pred EEEEECccHHHHHHHHHHHhC------CCcEEEEeCCH
Confidence 489999999999999999998 99999999875
No 433
>PF09257 BCMA-Tall_bind: BCMA, TALL-1 binding; InterPro: IPR015337 Cytokines can be grouped into a family on the basis of sequence, functional and structural similarities [, , ]. Tumor necrosis factor (TNF) (also known as TNF-alpha or cachectin) is a monocyte-derived cytotoxin that has been implicated in tumour regression, septic shock and cachexia [, ]. The protein is synthesised as a prohormone with an unusually long and atypical signal sequence, which is absent from the mature secreted cytokine []. A short hydrophobic stretch of amino acids serves to anchor the prohormone in lipid bilayers []. Both the mature protein and a partially-processed form of the hormone are secreted after cleavage of the propeptide []. There are a number of different families of TNF, but all these cytokines seem to form homotrimeric (or heterotrimeric in the case of LT-alpha/beta) complexes that are recognised by their specific receptors. Members of this entry, which are predominantly found in the tumour necrosis factor receptor superfamily member 17, BCMA, are required for binding to tumour necrosis factor ligand TALL-1 []. ; PDB: 2KN1_A 1OQD_R 1XU2_T.
Probab=86.52 E-value=0.036 Score=35.99 Aligned_cols=32 Identities=38% Similarity=0.565 Sum_probs=21.4
Q ss_pred ccCCCCCCCCCCcEEecCCCCccccCccCccCccccccCCCc
Q 007716 549 RSNTNHEHDQPAHLRLRDPKIPELVNLPEYAGPESRYCPARV 590 (592)
Q Consensus 549 ~~~~~h~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~cp~~v 590 (592)
+.+.-|. =.||||+-.+..-| -||||||-|.|
T Consensus 7 fD~LL~a-CkPChLRCsn~tPP---------~~Cq~YCnas~ 38 (39)
T PF09257_consen 7 FDRLLHA-CKPCHLRCSNNTPP---------LPCQRYCNASV 38 (39)
T ss_dssp EETTTTE-EEEHHHHHTSSS-----------TTTHHHHHHTC
T ss_pred HHHHHHh-cccceeecCCCCCC---------ccchhhccccc
Confidence 3344443 57999998873333 27999999876
No 434
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=86.35 E-value=12 Score=43.48 Aligned_cols=38 Identities=24% Similarity=0.075 Sum_probs=29.9
Q ss_pred CCEEEEcCCCcccCCCCccchHHHHHHHHHHHHHHhhhccC
Q 007716 415 PGGAIIGCAAGFLNVPKIKGTHTAMKSGMLAAEAGFGVLHE 455 (592)
Q Consensus 415 ~~v~LiGDAA~~~~P~~g~G~~~Am~dg~~aA~~l~~~~~~ 455 (592)
++++++|++.....| .-++-|+.||..+|+.|.+.++.
T Consensus 644 GRL~FAGEaTs~~~~---GtVhGAi~SGlRAA~eIl~~~~~ 681 (808)
T PLN02328 644 GRVFFAGEATNKQYP---ATMHGAFLSGMREAANILRVARR 681 (808)
T ss_pred CCEEEEEhhHhCCCC---eEhHHHHHHHHHHHHHHHHHHhh
Confidence 589999999665333 46788999999999998876544
No 435
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.16 E-value=0.85 Score=47.15 Aligned_cols=32 Identities=19% Similarity=0.236 Sum_probs=30.0
Q ss_pred cEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCC
Q 007716 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA 146 (592)
Q Consensus 109 DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~ 146 (592)
.|.|||+|..|...|..++.. |++|+++|..+
T Consensus 9 ~VaVIGaG~MG~giA~~~a~a------G~~V~l~D~~~ 40 (321)
T PRK07066 9 TFAAIGSGVIGSGWVARALAH------GLDVVAWDPAP 40 (321)
T ss_pred EEEEECcCHHHHHHHHHHHhC------CCeEEEEeCCH
Confidence 499999999999999999998 99999999875
No 436
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=86.01 E-value=1.1 Score=46.28 Aligned_cols=39 Identities=26% Similarity=0.319 Sum_probs=36.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCc
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAH 151 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~ 151 (592)
.|||+|+|-|..-...+..|+.. |.+|+.|||++.-|+.
T Consensus 6 ~yDvii~GTgl~esils~~Ls~~------~k~VlhiD~Nd~YG~~ 44 (434)
T COG5044 6 LYDVIILGTGLRESILSAALSWD------GKNVLHIDKNDYYGST 44 (434)
T ss_pred cccEEEecccHHHHHHHHHhhhc------CceEEEEeCCCccCcc
Confidence 79999999999999999999998 9999999999987763
No 437
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.00 E-value=1 Score=45.86 Aligned_cols=33 Identities=24% Similarity=0.224 Sum_probs=30.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCC
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA 146 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~ 146 (592)
..|.|||+|..|...|..|++. |.+|+++|+..
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~------G~~V~l~d~~~ 37 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALA------GYDVLLNDVSA 37 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHC------CCeEEEEeCCH
Confidence 3599999999999999999998 99999999765
No 438
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=85.77 E-value=0.94 Score=49.61 Aligned_cols=34 Identities=29% Similarity=0.382 Sum_probs=30.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCC
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA 146 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~ 146 (592)
...|+|+|+|++|+.++..++.. |.+|+++|.+.
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~l------GA~V~v~d~~~ 197 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSL------GAIVRAFDTRP 197 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCH
Confidence 46799999999999999999998 99999999765
No 439
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=85.74 E-value=0.87 Score=46.49 Aligned_cols=32 Identities=28% Similarity=0.372 Sum_probs=29.4
Q ss_pred cEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCC
Q 007716 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA 146 (592)
Q Consensus 109 DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~ 146 (592)
.|+|||+|-.|...|..|++. |.+|+++++..
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~------g~~V~~~~r~~ 33 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQA------GHDVTLVARRG 33 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhC------CCeEEEEECCh
Confidence 489999999999999999998 99999999853
No 440
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=85.71 E-value=1.2 Score=42.73 Aligned_cols=34 Identities=26% Similarity=0.362 Sum_probs=30.7
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCC-cEEEEcCC
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDL-SVCVVEKG 145 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~-~V~vlEk~ 145 (592)
....|+|||+|-.|...|..|++. |+ +++|+|..
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~------Gvg~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARA------GIGKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHc------CCCEEEEECCC
Confidence 357799999999999999999999 99 59999976
No 441
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.61 E-value=0.86 Score=46.37 Aligned_cols=33 Identities=33% Similarity=0.366 Sum_probs=30.6
Q ss_pred cEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCC
Q 007716 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAE 147 (592)
Q Consensus 109 DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~ 147 (592)
.|.|||+|..|...|..+++. |++|+++|+.++
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~------G~~V~l~d~~~~ 39 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARA------GVDVLVFETTEE 39 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhC------CCEEEEEECCHH
Confidence 599999999999999999998 999999998764
No 442
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=85.60 E-value=0.95 Score=46.30 Aligned_cols=30 Identities=27% Similarity=0.378 Sum_probs=28.4
Q ss_pred cEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcC
Q 007716 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEK 144 (592)
Q Consensus 109 DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk 144 (592)
.|+|||+|..|...|..|++. |.+|+++.+
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~------g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEA------GRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHC------CCceEEEec
Confidence 489999999999999999998 999999997
No 443
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=85.46 E-value=0.9 Score=46.31 Aligned_cols=32 Identities=22% Similarity=0.330 Sum_probs=29.8
Q ss_pred cEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCC
Q 007716 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA 146 (592)
Q Consensus 109 DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~ 146 (592)
.|.|||+|..|...|..|++. |.+|+++|+.+
T Consensus 5 ~I~ViGaG~mG~~iA~~la~~------G~~V~l~d~~~ 36 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFART------GYDVTIVDVSE 36 (291)
T ss_pred EEEEECccHHHHHHHHHHHhc------CCeEEEEeCCH
Confidence 499999999999999999998 99999999765
No 444
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=85.46 E-value=1 Score=46.31 Aligned_cols=33 Identities=30% Similarity=0.367 Sum_probs=29.3
Q ss_pred cEEEECCCHHHHHHHHHHHHhhhhcCCC--CcEEEEcCCCC
Q 007716 109 DVVIVGAGPAGLSAAIRLKQLCREKNVD--LSVCVVEKGAE 147 (592)
Q Consensus 109 DVvIVGaG~aGl~aA~~La~~~~~~~~g--~~V~vlEk~~~ 147 (592)
+|.|||+|..|.++|..|++. | ..|+++|+...
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~------g~~~ev~l~D~~~~ 36 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLR------GLASEIVLVDINKA 36 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHc------CCCCEEEEEECCch
Confidence 599999999999999999998 8 47999998653
No 445
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=84.97 E-value=1.5 Score=39.04 Aligned_cols=33 Identities=27% Similarity=0.453 Sum_probs=29.1
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcCCCC-cEEEEcCCC
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDL-SVCVVEKGA 146 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~~g~-~V~vlEk~~ 146 (592)
..|+|||+|-.|...|..|++. |+ +++|+|...
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~------Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARS------GVGKITLVDDDI 36 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHH------TTSEEEEEESSB
T ss_pred CEEEEECcCHHHHHHHHHHHHh------CCCceeecCCcc
Confidence 5699999999999999999999 98 699999653
No 446
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=84.50 E-value=1 Score=45.60 Aligned_cols=32 Identities=22% Similarity=0.296 Sum_probs=29.8
Q ss_pred cEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCC
Q 007716 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA 146 (592)
Q Consensus 109 DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~ 146 (592)
.|.|||+|..|...|..+++. |.+|+++|..+
T Consensus 5 kI~VIG~G~mG~~ia~~la~~------g~~V~~~d~~~ 36 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVA------GYDVVMVDISD 36 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHC------CCceEEEeCCH
Confidence 599999999999999999998 99999999765
No 447
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=84.47 E-value=1.4 Score=40.93 Aligned_cols=34 Identities=26% Similarity=0.284 Sum_probs=29.9
Q ss_pred ccccEEEECCCH-HHHHHHHHHHHhhhhcCCCCcEEEEcCC
Q 007716 106 MAYDVVIVGAGP-AGLSAAIRLKQLCREKNVDLSVCVVEKG 145 (592)
Q Consensus 106 ~~~DVvIVGaG~-aGl~aA~~La~~~~~~~~g~~V~vlEk~ 145 (592)
....|+|||+|- +|..+|..|.+. |.+|+++.|.
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~------g~~V~v~~r~ 77 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNR------NATVTVCHSK 77 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhC------CCEEEEEECC
Confidence 357899999996 699999999998 9999999975
No 448
>PRK04148 hypothetical protein; Provisional
Probab=83.84 E-value=0.9 Score=40.42 Aligned_cols=33 Identities=24% Similarity=0.362 Sum_probs=29.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCC
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAE 147 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~ 147 (592)
..|++||.| .|...|..|++. |.+|+.+|..+.
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~------G~~ViaIDi~~~ 50 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKES------GFDVIVIDINEK 50 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHC------CCEEEEEECCHH
Confidence 469999999 899899999998 999999998764
No 449
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=83.71 E-value=1.7 Score=48.81 Aligned_cols=36 Identities=19% Similarity=0.349 Sum_probs=32.4
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCC
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAE 147 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~ 147 (592)
++-+|+|+|.|..|-..|..|.+. |.+|+++|++++
T Consensus 416 ~~~hiiI~G~G~~G~~la~~L~~~------g~~vvvId~d~~ 451 (558)
T PRK10669 416 ICNHALLVGYGRVGSLLGEKLLAA------GIPLVVIETSRT 451 (558)
T ss_pred cCCCEEEECCChHHHHHHHHHHHC------CCCEEEEECCHH
Confidence 356799999999999999999998 999999998753
No 450
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=83.27 E-value=1.7 Score=44.75 Aligned_cols=32 Identities=25% Similarity=0.520 Sum_probs=28.6
Q ss_pred cEEEECCCHHHHHHHHHHHHhhhhcCCCC-cEEEEcCCC
Q 007716 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDL-SVCVVEKGA 146 (592)
Q Consensus 109 DVvIVGaG~aGl~aA~~La~~~~~~~~g~-~V~vlEk~~ 146 (592)
.|.|||+|..|...|..|+.. |+ +|+++|...
T Consensus 3 KV~VIGaG~vG~~iA~~la~~------g~~~VvlvDi~~ 35 (305)
T TIGR01763 3 KISVIGAGFVGATTAFRLAEK------ELADLVLLDVVE 35 (305)
T ss_pred EEEEECcCHHHHHHHHHHHHc------CCCeEEEEeCCC
Confidence 599999999999999999997 76 899999843
No 451
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=83.24 E-value=1.4 Score=46.96 Aligned_cols=34 Identities=29% Similarity=0.380 Sum_probs=30.9
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCC
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA 146 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~ 146 (592)
...|+|||.|+.|..+|..|+.. |.+|+++|..+
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~~------Ga~ViV~d~dp 228 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARGM------GARVIVTEVDP 228 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhhC------cCEEEEEeCCh
Confidence 45799999999999999999998 99999999765
No 452
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=83.07 E-value=1.6 Score=44.42 Aligned_cols=33 Identities=30% Similarity=0.403 Sum_probs=29.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcCCCC-cEEEEcCCC
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDL-SVCVVEKGA 146 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~~g~-~V~vlEk~~ 146 (592)
..|+|||+|-+|-++|..|++. |+ +|+|++|..
T Consensus 128 k~vlIlGaGGaaraia~aL~~~------G~~~I~I~nR~~ 161 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTL------GVERLTIFDVDP 161 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHc------CCCEEEEECCCH
Confidence 5799999999999999999998 87 699999864
No 453
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=82.63 E-value=2.2 Score=46.32 Aligned_cols=117 Identities=21% Similarity=0.239 Sum_probs=72.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcCCCC-cEEEEcCCCCCCCcccccCccChHHHHHhhHhhhhcCCCeeeeccCCcE
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDL-SVCVVEKGAEVGAHIISGNVFEPRALNELLPQWKQEEAPIRVPVSSDKF 186 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~~g~-~V~vlEk~~~~g~~~~~g~~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~ 186 (592)
.+|||||||-.++=+|....++ |+ +|+.+++...--.. ..|..
T Consensus 263 k~vvVIGgG~Ta~D~~~t~~r~------Ga~~v~~~~~~~~~~~~----------------~~~~~-------------- 306 (457)
T COG0493 263 KRVVVIGGGDTAMDCAGTALRL------GAKSVTCFYREDRDDET----------------NEWPT-------------- 306 (457)
T ss_pred CeEEEECCCCCHHHHHHHHhhc------CCeEEEEeccccccccC----------------Ccccc--------------
Confidence 7899999999999999888888 88 67777632211000 00000
Q ss_pred EEeecCCcccCCCCCCCCCcEEEcHHHHHHHHHHHHHHcCCEEecCceEEEEEEcCCCcEEEEEeccCccc--CCC--Cc
Q 007716 187 WFLTKDRAFSLPSPFSNRGNYVISLSQLVRWLGGKAEELGVEIYPGFAASEILYDADNKVIGIGTNDMGIA--KDG--SK 262 (592)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~Gv~i~~g~~v~~i~~~~~g~v~~V~~~d~g~~--~~G--~~ 262 (592)
+ =.....+.+.+.|++..+...-.+++.+++|+|.++.+..+... .+| ..
T Consensus 307 ----------~----------------~~~~~~~~a~eeg~~~~~~~~~~~~~~~e~GrV~~~~~~~~~~~~~~~~~~r~ 360 (457)
T COG0493 307 ----------W----------------AAQLEVRSAGEEGVERLPFVQPKAFIGNEGGRVTGVKFGRVEPGEYVDGWGRR 360 (457)
T ss_pred ----------c----------------chhhhhhhhhhcCCcccccCCceeEeecCCCcEeeeecccccccCcccccccc
Confidence 0 01123555666788888888888888888899988877653221 122 12
Q ss_pred ccccccc--eEEEcCEEEEecCCCCc
Q 007716 263 KENFQRG--VELRGRITLLAEGCRGS 286 (592)
Q Consensus 263 ~~~f~~g--~~i~a~~vI~A~G~~s~ 286 (592)
+..-..| ..+.+|.|+.|.|-...
T Consensus 361 ~p~~v~gs~~~~~aD~v~~aig~~~~ 386 (457)
T COG0493 361 GPVGVIGTEKTDAADTVILAIGFEGD 386 (457)
T ss_pred cCccccCceEEehHHHHHHHhccCCC
Confidence 2222223 45678888888885543
No 454
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=82.33 E-value=1.7 Score=44.52 Aligned_cols=34 Identities=29% Similarity=0.467 Sum_probs=31.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCC
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA 146 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~ 146 (592)
...|+|||.|.+|..+|..|++. |.+|+++++..
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~------Ga~V~v~~r~~ 185 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKAL------GANVTVGARKS 185 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC------CCEEEEEECCH
Confidence 56899999999999999999998 99999999875
No 455
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=82.24 E-value=1.8 Score=42.35 Aligned_cols=34 Identities=32% Similarity=0.443 Sum_probs=30.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCc---EEEEcCCC
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLS---VCVVEKGA 146 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~---V~vlEk~~ 146 (592)
+..|+|+|+|-+|...|..|.+. |++ +.|++|..
T Consensus 25 ~~rvlvlGAGgAg~aiA~~L~~~------G~~~~~i~ivdr~g 61 (226)
T cd05311 25 EVKIVINGAGAAGIAIARLLLAA------GAKPENIVVVDSKG 61 (226)
T ss_pred CCEEEEECchHHHHHHHHHHHHc------CcCcceEEEEeCCC
Confidence 45799999999999999999998 885 99999874
No 456
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=81.74 E-value=2 Score=44.82 Aligned_cols=34 Identities=26% Similarity=0.435 Sum_probs=30.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCC-cEEEEcCCC
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDL-SVCVVEKGA 146 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~-~V~vlEk~~ 146 (592)
...|+|||+|-.|..+|..|++. |+ +++|+|...
T Consensus 24 ~~~VlIiG~GglGs~va~~La~a------Gvg~i~lvD~D~ 58 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRA------GIGKLTIADRDY 58 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc------CCCEEEEEcCCc
Confidence 46799999999999999999999 98 799999764
No 457
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=81.37 E-value=1.5 Score=47.13 Aligned_cols=33 Identities=30% Similarity=0.426 Sum_probs=30.3
Q ss_pred cEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCC
Q 007716 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAE 147 (592)
Q Consensus 109 DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~ 147 (592)
.|.|||.|..|+.+|..|++. |.+|+++++...
T Consensus 2 kI~vIGlG~~G~~lA~~La~~------G~~V~~~d~~~~ 34 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADL------GHEVTGVDIDQE 34 (411)
T ss_pred EEEEECCCchhHHHHHHHHhc------CCeEEEEECCHH
Confidence 489999999999999999998 999999998754
No 458
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=81.26 E-value=1.9 Score=46.22 Aligned_cols=34 Identities=35% Similarity=0.422 Sum_probs=30.9
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCC
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA 146 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~ 146 (592)
...|+|+|.|..|..+|..|+.. |.+|+++|..+
T Consensus 212 Gk~VlViG~G~IG~~vA~~lr~~------Ga~ViV~d~dp 245 (425)
T PRK05476 212 GKVVVVAGYGDVGKGCAQRLRGL------GARVIVTEVDP 245 (425)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC------CCEEEEEcCCc
Confidence 35699999999999999999998 99999999765
No 459
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=81.06 E-value=2.4 Score=40.67 Aligned_cols=35 Identities=29% Similarity=0.512 Sum_probs=31.0
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCC-cEEEEcCCC
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDL-SVCVVEKGA 146 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~-~V~vlEk~~ 146 (592)
.+..|+|||+|..|..+|..|++. |. +++|+|...
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~------Gv~~i~lvD~d~ 55 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGA------GVGTIVIVDDDH 55 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHc------CCCeEEEecCCE
Confidence 357799999999999999999999 98 799999654
No 460
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=81.06 E-value=2 Score=44.17 Aligned_cols=32 Identities=25% Similarity=0.426 Sum_probs=29.5
Q ss_pred cEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCC
Q 007716 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA 146 (592)
Q Consensus 109 DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~ 146 (592)
.|.|||+|..|.+.|..|++. |++|+++|+..
T Consensus 6 ~I~vIGaG~mG~~iA~~l~~~------g~~V~~~d~~~ 37 (311)
T PRK06130 6 NLAIIGAGTMGSGIAALFARK------GLQVVLIDVME 37 (311)
T ss_pred EEEEECCCHHHHHHHHHHHhC------CCeEEEEECCH
Confidence 599999999999999999998 99999999764
No 461
>PRK06223 malate dehydrogenase; Reviewed
Probab=80.85 E-value=2.2 Score=43.87 Aligned_cols=34 Identities=26% Similarity=0.345 Sum_probs=29.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcCCCC-cEEEEcCCCC
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDL-SVCVVEKGAE 147 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~~g~-~V~vlEk~~~ 147 (592)
.+|.|||+|..|.+.|..+++. |+ +|+++|...+
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~------~~~ev~L~D~~~~ 37 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALK------ELGDVVLFDIVEG 37 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCeEEEEEECCCc
Confidence 4699999999999999999987 65 8999998553
No 462
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=80.79 E-value=2.2 Score=44.46 Aligned_cols=35 Identities=29% Similarity=0.430 Sum_probs=31.2
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCC-cEEEEcCCC
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDL-SVCVVEKGA 146 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~-~V~vlEk~~ 146 (592)
....|+|||+|-.|..+|..|++. |+ +++|+|...
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~a------Gvg~i~lvD~D~ 58 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRA------GVGKVTIVDRDY 58 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHc------CCCeEEEEeCCc
Confidence 356799999999999999999999 98 899999753
No 463
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=80.72 E-value=1.9 Score=46.87 Aligned_cols=32 Identities=28% Similarity=0.418 Sum_probs=29.6
Q ss_pred cEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCC
Q 007716 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA 146 (592)
Q Consensus 109 DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~ 146 (592)
.|+|+|+|..|.++|..|++. |.+|++.|+..
T Consensus 7 ~v~v~G~g~~G~s~a~~l~~~------G~~V~~~d~~~ 38 (447)
T PRK02472 7 KVLVLGLAKSGYAAAKLLHKL------GANVTVNDGKP 38 (447)
T ss_pred EEEEEeeCHHHHHHHHHHHHC------CCEEEEEcCCC
Confidence 489999999999999999999 99999999764
No 464
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=80.45 E-value=2 Score=47.31 Aligned_cols=32 Identities=22% Similarity=0.351 Sum_probs=29.1
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCC
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKG 145 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~ 145 (592)
..|+|+|.|..|++++..|.+. |.+|++.|..
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~------G~~v~~~D~~ 44 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRF------GARPTVCDDD 44 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHC------CCEEEEEcCC
Confidence 3599999999999999999988 9999999965
No 465
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=80.37 E-value=2.1 Score=44.38 Aligned_cols=32 Identities=31% Similarity=0.454 Sum_probs=29.5
Q ss_pred cEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCC
Q 007716 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA 146 (592)
Q Consensus 109 DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~ 146 (592)
+|.|||+|..|.+.|..|++. |.+|+++.+..
T Consensus 2 kI~IiGaGa~G~ala~~L~~~------g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSK------KISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHC------CCeEEEEecCH
Confidence 489999999999999999998 99999999854
No 466
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=80.31 E-value=2.4 Score=44.01 Aligned_cols=32 Identities=22% Similarity=0.315 Sum_probs=29.9
Q ss_pred cEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCC
Q 007716 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA 146 (592)
Q Consensus 109 DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~ 146 (592)
.|.|||+|.-|.+.|..|++. |.+|+++++..
T Consensus 6 ~I~iIG~G~mG~~ia~~L~~~------G~~V~~~~r~~ 37 (328)
T PRK14618 6 RVAVLGAGAWGTALAVLAASK------GVPVRLWARRP 37 (328)
T ss_pred eEEEECcCHHHHHHHHHHHHC------CCeEEEEeCCH
Confidence 599999999999999999998 99999999864
No 467
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=80.28 E-value=2.6 Score=42.35 Aligned_cols=35 Identities=20% Similarity=0.283 Sum_probs=30.8
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCC-CcEEEEcCCC
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVD-LSVCVVEKGA 146 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g-~~V~vlEk~~ 146 (592)
....|+|||+|-.|..+|..|++. | -+++|+|...
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~------GVg~itLiD~D~ 64 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALART------GIGAITLIDMDD 64 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHc------CCCEEEEEeCCE
Confidence 357799999999999999999999 8 4799999654
No 468
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=80.04 E-value=2.3 Score=42.15 Aligned_cols=36 Identities=31% Similarity=0.312 Sum_probs=32.3
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCC
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAE 147 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~ 147 (592)
....++|+|||+.+..+|..++.. |++|+|+|-++.
T Consensus 99 p~~~L~IfGaG~va~~la~la~~l------Gf~V~v~D~R~~ 134 (246)
T TIGR02964 99 PAPHVVLFGAGHVGRALVRALAPL------PCRVTWVDSREA 134 (246)
T ss_pred CCCEEEEECCcHHHHHHHHHHhcC------CCEEEEEeCCcc
Confidence 346899999999999999999999 999999997654
No 469
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=79.87 E-value=1.9 Score=46.42 Aligned_cols=34 Identities=21% Similarity=0.281 Sum_probs=30.9
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCC
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAE 147 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~ 147 (592)
..|.|||.|..|+.+|..|++. |.+|+++|+.+.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~------G~~V~~~D~~~~ 37 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASR------QKQVIGVDINQH 37 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhC------CCEEEEEeCCHH
Confidence 3599999999999999999999 999999997654
No 470
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=79.83 E-value=2.7 Score=43.48 Aligned_cols=34 Identities=18% Similarity=0.261 Sum_probs=30.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcCCCC-cEEEEcCCCC
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDL-SVCVVEKGAE 147 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~~g~-~V~vlEk~~~ 147 (592)
..|+|||+|..|.+.|..++.. |+ +++|+|..+.
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~------gl~~i~LvDi~~~ 41 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLK------NLGDVVLFDIVKN 41 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCeEEEEeCCCc
Confidence 5799999999999999999987 86 8999998764
No 471
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=79.80 E-value=3 Score=37.57 Aligned_cols=34 Identities=26% Similarity=0.447 Sum_probs=28.3
Q ss_pred cEEEECC-CHHHHHHHHHHHHhhhhcCCCCcEEEEcCCC
Q 007716 109 DVVIVGA-GPAGLSAAIRLKQLCREKNVDLSVCVVEKGA 146 (592)
Q Consensus 109 DVvIVGa-G~aGl~aA~~La~~~~~~~~g~~V~vlEk~~ 146 (592)
+|.|||+ |..|.++|..|.+. +-.-+++++|...
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~----~l~~ei~L~D~~~ 36 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQ----GLADEIVLIDINE 36 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT----TTSSEEEEEESSH
T ss_pred EEEEECCCChHHHHHHHHHHhC----CCCCceEEeccCc
Confidence 5999999 99999999999987 1134699999774
No 472
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=79.63 E-value=2.3 Score=44.96 Aligned_cols=33 Identities=24% Similarity=0.432 Sum_probs=30.1
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcCCC-CcEEEEcCCC
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVD-LSVCVVEKGA 146 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~~g-~~V~vlEk~~ 146 (592)
.+|+|||+|-.|.++|..|++. + .+|+|.+|..
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~------~d~~V~iAdRs~ 35 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQN------GDGEVTIADRSK 35 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhC------CCceEEEEeCCH
Confidence 4699999999999999999998 6 8999999884
No 473
>PLN02494 adenosylhomocysteinase
Probab=79.37 E-value=2.4 Score=45.78 Aligned_cols=34 Identities=29% Similarity=0.303 Sum_probs=30.9
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCC
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA 146 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~ 146 (592)
.-.|+|+|.|..|..+|..|+.. |.+|+++|+.+
T Consensus 254 GKtVvViGyG~IGr~vA~~aka~------Ga~VIV~e~dp 287 (477)
T PLN02494 254 GKVAVICGYGDVGKGCAAAMKAA------GARVIVTEIDP 287 (477)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCc
Confidence 45799999999999999999988 99999999765
No 474
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=79.33 E-value=2.1 Score=46.69 Aligned_cols=35 Identities=23% Similarity=0.302 Sum_probs=29.6
Q ss_pred cEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCC
Q 007716 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAE 147 (592)
Q Consensus 109 DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~ 147 (592)
.|.|||.|..|+.+|..|++. +.|.+|+.+|....
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~----g~g~~V~gvD~~~~ 37 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALK----CPDIEVVVVDISVP 37 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhc----CCCCeEEEEECCHH
Confidence 599999999999999999987 12478999997654
No 475
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=79.12 E-value=2.3 Score=43.62 Aligned_cols=31 Identities=29% Similarity=0.425 Sum_probs=27.9
Q ss_pred EEEECCCHHHHHHHHHHHHhhhhcCCCC-cEEEEcCCC
Q 007716 110 VVIVGAGPAGLSAAIRLKQLCREKNVDL-SVCVVEKGA 146 (592)
Q Consensus 110 VvIVGaG~aGl~aA~~La~~~~~~~~g~-~V~vlEk~~ 146 (592)
|.|||+|-.|...|..|+.. ++ +|+++|...
T Consensus 1 I~IIGaG~vG~~ia~~la~~------~l~eV~L~Di~e 32 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALK------ELGDVVLLDIVE 32 (300)
T ss_pred CEEECCCHHHHHHHHHHHhC------CCcEEEEEeCCC
Confidence 57999999999999999987 76 999999875
No 476
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=79.03 E-value=2.6 Score=43.03 Aligned_cols=32 Identities=25% Similarity=0.353 Sum_probs=29.8
Q ss_pred cEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCC
Q 007716 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA 146 (592)
Q Consensus 109 DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~ 146 (592)
.|.|||+|..|...|..|++. |.+|+++|+..
T Consensus 6 ~V~vIG~G~mG~~iA~~l~~~------G~~V~~~d~~~ 37 (295)
T PLN02545 6 KVGVVGAGQMGSGIAQLAAAA------GMDVWLLDSDP 37 (295)
T ss_pred EEEEECCCHHHHHHHHHHHhc------CCeEEEEeCCH
Confidence 499999999999999999998 99999999765
No 477
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=78.77 E-value=2.7 Score=42.78 Aligned_cols=33 Identities=12% Similarity=0.218 Sum_probs=29.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcCCCCc-EEEEcCCC
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLS-VCVVEKGA 146 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~-V~vlEk~~ 146 (592)
..|+|+|||-+|.++|..|++. |.+ |+|+.|..
T Consensus 127 k~vlI~GAGGagrAia~~La~~------G~~~V~I~~R~~ 160 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCALD------GAKEITIFNIKD 160 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHHC------CCCEEEEEeCCc
Confidence 4699999999999999999998 987 99999864
No 478
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=78.50 E-value=1 Score=46.55 Aligned_cols=42 Identities=26% Similarity=0.265 Sum_probs=33.4
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCC
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGA 150 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~ 150 (592)
+..+-|||+|.|||++|..|-|- -+..|-++.|+|.-+..||
T Consensus 22 qKsaY~vG~GlAsLA~AvfLIRD--g~m~G~~IHilEelpl~GG 63 (587)
T COG4716 22 QKSAYIVGGGLASLAAAVFLIRD--GQMDGKRIHILEELPLAGG 63 (587)
T ss_pred cceeEEEccchHhhhheeEEEec--cccCCceeEeeecCcccCC
Confidence 35588999999999999999774 1234789999998776665
No 479
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=78.43 E-value=2.5 Score=46.64 Aligned_cols=32 Identities=22% Similarity=0.293 Sum_probs=30.0
Q ss_pred cEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCC
Q 007716 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA 146 (592)
Q Consensus 109 DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~ 146 (592)
.|.|||+|..|...|..|++. |++|+|+|+.+
T Consensus 6 kIavIG~G~MG~~iA~~la~~------G~~V~v~D~~~ 37 (495)
T PRK07531 6 KAACIGGGVIGGGWAARFLLA------GIDVAVFDPHP 37 (495)
T ss_pred EEEEECcCHHHHHHHHHHHhC------CCeEEEEeCCH
Confidence 599999999999999999998 99999999865
No 480
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=78.35 E-value=3 Score=42.84 Aligned_cols=33 Identities=24% Similarity=0.188 Sum_probs=30.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCC
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA 146 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~ 146 (592)
..|.|||+|-.|.+.|..|++. |.+|.++++..
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~------G~~V~~~~r~~ 37 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASAN------GHRVRVWSRRS 37 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHC------CCEEEEEeCCC
Confidence 4599999999999999999998 99999999875
No 481
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=78.34 E-value=2.5 Score=44.35 Aligned_cols=32 Identities=47% Similarity=0.629 Sum_probs=24.7
Q ss_pred cEEEECCCHHHHHHHHHHHHhhhhcCCCC-cEEEEcCCC
Q 007716 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDL-SVCVVEKGA 146 (592)
Q Consensus 109 DVvIVGaG~aGl~aA~~La~~~~~~~~g~-~V~vlEk~~ 146 (592)
.|+|+|+||.||.++..++.. |. +|+++|+.+
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~------Ga~~Viv~d~~~ 203 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLL------GASVVIVVDRSP 203 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHc------CCceEEEeCCCH
Confidence 599999999999996666666 75 466667654
No 482
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=78.30 E-value=2.7 Score=43.34 Aligned_cols=32 Identities=25% Similarity=0.383 Sum_probs=29.7
Q ss_pred cEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCC
Q 007716 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA 146 (592)
Q Consensus 109 DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~ 146 (592)
+|.|||+|..|...|..|++. |.+|+++++.+
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~------g~~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARN------GHDVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhC------CCEEEEEECCH
Confidence 599999999999999999998 99999999864
No 483
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=78.26 E-value=3.5 Score=36.97 Aligned_cols=32 Identities=22% Similarity=0.442 Sum_probs=28.7
Q ss_pred cEEEECCCHHHHHHHHHHHHhhhhcCCCC-cEEEEcCCC
Q 007716 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDL-SVCVVEKGA 146 (592)
Q Consensus 109 DVvIVGaG~aGl~aA~~La~~~~~~~~g~-~V~vlEk~~ 146 (592)
.|+|||+|-.|...|..|++. |. +++|+|...
T Consensus 1 ~VliiG~GglGs~ia~~L~~~------Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARS------GVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHC------CCCEEEEEcCCC
Confidence 389999999999999999998 98 699999654
No 484
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=78.18 E-value=3.3 Score=42.71 Aligned_cols=34 Identities=26% Similarity=0.426 Sum_probs=30.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCC--cEEEEcCCC
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDL--SVCVVEKGA 146 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~--~V~vlEk~~ 146 (592)
...|.|||+|-.|.++|..|+.. ++ .++|+|...
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~------~~~~el~L~D~~~ 41 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQ------GIADELVIIDINK 41 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCC
Confidence 35799999999999999999987 77 799999854
No 485
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=78.17 E-value=2.9 Score=40.71 Aligned_cols=33 Identities=21% Similarity=0.323 Sum_probs=28.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCC
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKG 145 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~ 145 (592)
...|+|||||..++.=+..|.+. |.+|+|+-..
T Consensus 25 ~~~VLVVGGG~VA~RK~~~Ll~~------gA~VtVVap~ 57 (223)
T PRK05562 25 KIKVLIIGGGKAAFIKGKTFLKK------GCYVYILSKK 57 (223)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC------CCEEEEEcCC
Confidence 45699999999999989999998 9999999643
No 486
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=78.16 E-value=3.3 Score=38.74 Aligned_cols=32 Identities=28% Similarity=0.361 Sum_probs=28.6
Q ss_pred cEEEECCCHHHHHHHHHHHHhhhhcCCCCc-EEEEcCCC
Q 007716 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLS-VCVVEKGA 146 (592)
Q Consensus 109 DVvIVGaG~aGl~aA~~La~~~~~~~~g~~-V~vlEk~~ 146 (592)
.|+|||+|-.|...|..|++. |.. ++++|...
T Consensus 1 ~VlViG~GglGs~ia~~La~~------Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS------GVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc------CCCeEEEEeCCE
Confidence 389999999999999999998 985 99999654
No 487
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=78.15 E-value=2.8 Score=45.56 Aligned_cols=34 Identities=18% Similarity=0.332 Sum_probs=30.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCC
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAE 147 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~ 147 (592)
..|+|+|.|.+|+++|..|++. |.+|++.|....
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~------g~~v~~~d~~~~ 39 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKN------GAEVAAYDAELK 39 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCCC
Confidence 3599999999999999999999 999999997653
No 488
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=77.80 E-value=2.7 Score=45.84 Aligned_cols=33 Identities=24% Similarity=0.327 Sum_probs=30.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCC
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA 146 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~ 146 (592)
..|+|+|.|.+|+++|..|++. |.+|++.|+.+
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~------G~~V~~~D~~~ 47 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKL------GAKVTAFDKKS 47 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHC------CCEEEEECCCC
Confidence 3599999999999999999999 99999999765
No 489
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=77.66 E-value=3 Score=42.85 Aligned_cols=33 Identities=33% Similarity=0.513 Sum_probs=29.0
Q ss_pred cEEEECCCHHHHHHHHHHHHhhhhcCCCC--cEEEEcCCCC
Q 007716 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDL--SVCVVEKGAE 147 (592)
Q Consensus 109 DVvIVGaG~aGl~aA~~La~~~~~~~~g~--~V~vlEk~~~ 147 (592)
.|+|||+|-+|.++|..|+.. |+ .++++|+...
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~------g~~~ei~l~D~~~~ 36 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQ------GIADELVLIDINEE 36 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCcc
Confidence 489999999999999999988 74 7999998653
No 490
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=77.38 E-value=2.9 Score=42.53 Aligned_cols=34 Identities=24% Similarity=0.420 Sum_probs=31.1
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCC
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA 146 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~ 146 (592)
...|+|||.|..|.++|..|+.. |.+|++++|..
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~------G~~V~v~~R~~ 184 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSAL------GARVFVGARSS 184 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHC------CCEEEEEeCCH
Confidence 45799999999999999999998 99999999865
No 491
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=77.30 E-value=5 Score=44.03 Aligned_cols=61 Identities=18% Similarity=0.252 Sum_probs=41.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCCCCCCccccc-CccChHHHHHhhHhhh
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGAEVGAHIISG-NVFEPRALNELLPQWK 171 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~~~g~~~~~g-~~i~~~~l~~ll~~~~ 171 (592)
...++|||||-+|...+..+.+.. ...-|.++|..+..-+..+.| .++.+..+.++..+..
T Consensus 116 ~~r~lIiGAG~ag~~l~r~~~~~~----~~~pV~fiDdd~~~~g~~i~Gv~V~g~~~i~~~v~~~~ 177 (588)
T COG1086 116 RIRLLIIGAGSAGDLLLRALRRDP----EYTPVAFLDDDPDLTGMKIRGVPVLGRIEIERVVEELG 177 (588)
T ss_pred CCceEEEcCchHHHHHHHHHHhCC----CcceEEEECCChhhcCCEEeceeeechhHHHHHHHHcC
Confidence 467999999999999999998861 144588899877655544445 2334444555554443
No 492
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=76.74 E-value=2.9 Score=45.80 Aligned_cols=33 Identities=18% Similarity=0.051 Sum_probs=30.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCC
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA 146 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~ 146 (592)
..|+|+|.|-+|.++|..|.+. |.+|++.|.+.
T Consensus 9 ~~v~v~G~G~sG~~~~~~l~~~------g~~v~~~d~~~ 41 (468)
T PRK04690 9 RRVALWGWGREGRAAYRALRAH------LPAQALTLFCN 41 (468)
T ss_pred CEEEEEccchhhHHHHHHHHHc------CCEEEEEcCCC
Confidence 4599999999999999999999 99999999654
No 493
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=76.60 E-value=3.9 Score=38.80 Aligned_cols=33 Identities=30% Similarity=0.509 Sum_probs=29.1
Q ss_pred cccEEEECC-CHHHHHHHHHHHHhhhhcCCCCcEEEEcCC
Q 007716 107 AYDVVIVGA-GPAGLSAAIRLKQLCREKNVDLSVCVVEKG 145 (592)
Q Consensus 107 ~~DVvIVGa-G~aGl~aA~~La~~~~~~~~g~~V~vlEk~ 145 (592)
...|+|+|| |..|..+|..|++. |.+|+++.|.
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~------g~~V~l~~R~ 61 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLARE------GARVVLVGRD 61 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHC------CCEEEEEcCC
Confidence 356999997 99999999999998 8999999865
No 494
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=76.40 E-value=3 Score=42.23 Aligned_cols=32 Identities=31% Similarity=0.400 Sum_probs=29.3
Q ss_pred cEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCC
Q 007716 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA 146 (592)
Q Consensus 109 DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~ 146 (592)
.|.|||.|..|.+.|..|++. |.+|+++++..
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~------g~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL------GHTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC------CCEEEEEECCH
Confidence 489999999999999999998 99999999764
No 495
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=76.24 E-value=4.1 Score=39.47 Aligned_cols=35 Identities=26% Similarity=0.307 Sum_probs=30.7
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCCc-EEEEcCCC
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDLS-VCVVEKGA 146 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~-V~vlEk~~ 146 (592)
....|+|||+|-.|...|..|++. |+. ++|+|...
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~------Gvg~i~lvD~D~ 62 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARS------GVGNLKLVDFDV 62 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHc------CCCeEEEEeCCE
Confidence 357799999999999999999998 886 99999653
No 496
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=76.14 E-value=3.9 Score=39.18 Aligned_cols=32 Identities=22% Similarity=0.265 Sum_probs=29.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCC
Q 007716 108 YDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKG 145 (592)
Q Consensus 108 ~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~ 145 (592)
..|+|+|.|-.|..+|..|.+. |.+|++.|+.
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~------G~~Vvv~D~~ 60 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEE------GAKLIVADIN 60 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCC
Confidence 5699999999999999999998 9999999865
No 497
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=76.02 E-value=3.3 Score=38.10 Aligned_cols=34 Identities=32% Similarity=0.410 Sum_probs=27.3
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCC
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA 146 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~ 146 (592)
-..++|+|=|..|-..|..|+.. |.+|+|.|..+
T Consensus 23 Gk~vvV~GYG~vG~g~A~~lr~~------Ga~V~V~e~DP 56 (162)
T PF00670_consen 23 GKRVVVIGYGKVGKGIARALRGL------GARVTVTEIDP 56 (162)
T ss_dssp TSEEEEE--SHHHHHHHHHHHHT------T-EEEEE-SSH
T ss_pred CCEEEEeCCCcccHHHHHHHhhC------CCEEEEEECCh
Confidence 35699999999999999999999 99999999865
No 498
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=75.97 E-value=2.9 Score=45.42 Aligned_cols=32 Identities=31% Similarity=0.509 Sum_probs=29.7
Q ss_pred cEEEECCCHHHHHHHHHHHHhhhhcCCCCcEEEEcCCC
Q 007716 109 DVVIVGAGPAGLSAAIRLKQLCREKNVDLSVCVVEKGA 146 (592)
Q Consensus 109 DVvIVGaG~aGl~aA~~La~~~~~~~~g~~V~vlEk~~ 146 (592)
+|+|||+|..|...|..|.+. |.+|+++|+.+
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~------g~~v~vid~~~ 33 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGE------NNDVTVIDTDE 33 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhC------CCcEEEEECCH
Confidence 599999999999999999998 99999999865
No 499
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=75.65 E-value=4.1 Score=40.28 Aligned_cols=34 Identities=26% Similarity=0.374 Sum_probs=29.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHhhhhcCCCC-cEEEEcCCC
Q 007716 107 AYDVVIVGAGPAGLSAAIRLKQLCREKNVDL-SVCVVEKGA 146 (592)
Q Consensus 107 ~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~-~V~vlEk~~ 146 (592)
...|+|||+|-.|..+|..|++. |+ +++|+|...
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~------Gvg~i~lvD~D~ 58 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAA------GVGNLTLLDFDT 58 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHc------CCCEEEEEeCCc
Confidence 46799999999999999999998 86 588888654
No 500
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=75.46 E-value=4.2 Score=40.35 Aligned_cols=35 Identities=26% Similarity=0.359 Sum_probs=30.4
Q ss_pred ccccEEEECCCHHHHHHHHHHHHhhhhcCCCC-cEEEEcCCC
Q 007716 106 MAYDVVIVGAGPAGLSAAIRLKQLCREKNVDL-SVCVVEKGA 146 (592)
Q Consensus 106 ~~~DVvIVGaG~aGl~aA~~La~~~~~~~~g~-~V~vlEk~~ 146 (592)
....|+|||+|..|..+|..|++. |+ +++|+|...
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~------Gvg~i~lvD~D~ 66 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAA------GVGTLTLVDFDT 66 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHc------CCCEEEEEcCCE
Confidence 357899999999999999999998 87 688998653
Done!