Query 007717
Match_columns 591
No_of_seqs 143 out of 224
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 08:44:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007717.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007717hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3szr_A Interferon-induced GTP- 100.0 3.9E-39 1.3E-43 359.4 31.7 408 1-568 181-602 (608)
2 3zvr_A Dynamin-1; hydrolase, D 100.0 5.5E-39 1.9E-43 365.7 28.1 315 3-387 186-510 (772)
3 3t34_A Dynamin-related protein 99.7 1.4E-17 4.9E-22 173.1 10.4 174 2-200 171-347 (360)
4 2x2e_A Dynamin-1; nitration, h 99.7 3E-16 1E-20 163.2 18.1 175 2-202 165-344 (353)
5 3ljb_A Interferon-induced GTP- 99.4 1.5E-12 5.3E-17 132.6 12.2 150 186-384 7-167 (271)
6 1jwy_B Dynamin A GTPase domain 99.1 6.5E-10 2.2E-14 111.9 11.8 146 3-173 167-315 (315)
7 2aka_B Dynamin-1; fusion prote 99.0 2.7E-09 9.1E-14 106.2 13.4 137 2-162 160-298 (299)
8 2j69_A Bacterial dynamin-like 94.6 0.23 7.8E-06 56.3 12.8 41 5-46 202-243 (695)
9 3cph_A RAS-related protein SEC 72.0 12 0.00041 34.0 8.1 44 3-46 92-138 (213)
10 1g16_A RAS-related protein SEC 71.8 6.6 0.00022 34.0 6.0 44 3-46 75-121 (170)
11 2gf9_A RAS-related protein RAB 71.5 11 0.00037 33.8 7.6 44 3-46 94-140 (189)
12 3bc1_A RAS-related protein RAB 66.0 23 0.00079 31.1 8.5 45 2-46 92-140 (195)
13 2f7s_A C25KG, RAS-related prot 63.1 29 0.00099 31.7 8.8 44 3-46 107-154 (217)
14 3dz8_A RAS-related protein RAB 61.9 16 0.00056 32.7 6.8 44 3-46 95-141 (191)
15 1zbd_A Rabphilin-3A; G protein 61.5 22 0.00074 32.1 7.6 44 3-46 80-126 (203)
16 2a5j_A RAS-related protein RAB 61.1 25 0.00084 31.5 7.8 44 3-46 93-139 (191)
17 2bme_A RAB4A, RAS-related prot 60.7 30 0.001 30.4 8.2 45 2-46 81-128 (186)
18 2oil_A CATX-8, RAS-related pro 60.4 27 0.00094 31.1 8.0 44 3-46 97-143 (193)
19 2lkc_A Translation initiation 60.0 8.9 0.0003 33.6 4.5 54 3-61 78-132 (178)
20 2fu5_C RAS-related protein RAB 59.1 34 0.0012 30.0 8.3 45 2-46 79-126 (183)
21 2dyk_A GTP-binding protein; GT 58.8 15 0.00052 31.4 5.7 52 2-60 78-131 (161)
22 3tw8_B RAS-related protein RAB 58.7 39 0.0013 29.2 8.5 43 3-46 81-126 (181)
23 2fg5_A RAB-22B, RAS-related pr 58.4 16 0.00054 33.0 6.0 60 3-62 95-157 (192)
24 1z08_A RAS-related protein RAB 58.3 11 0.00037 32.7 4.7 45 2-46 77-124 (170)
25 2ew1_A RAS-related protein RAB 54.5 37 0.0013 31.2 8.0 45 2-46 97-144 (201)
26 3t5d_A Septin-7; GTP-binding p 53.8 14 0.00049 36.0 5.3 41 4-46 116-157 (274)
27 3nmd_A CGMP dependent protein 53.5 8.4 0.00029 31.8 2.8 47 526-572 23-69 (72)
28 2g6b_A RAS-related protein RAB 53.1 14 0.00046 32.5 4.5 44 3-46 83-129 (180)
29 2il1_A RAB12; G-protein, GDP, 51.9 16 0.00055 33.0 4.9 43 4-46 99-144 (192)
30 3tkl_A RAS-related protein RAB 51.6 24 0.00083 31.3 6.0 44 3-46 88-134 (196)
31 4djt_A GTP-binding nuclear pro 51.2 23 0.00077 32.4 5.9 44 3-46 84-130 (218)
32 2yc2_C IFT27, small RAB-relate 48.9 44 0.0015 29.8 7.4 45 2-46 95-145 (208)
33 2fn4_A P23, RAS-related protei 48.4 44 0.0015 28.9 7.1 43 4-46 81-127 (181)
34 2o52_A RAS-related protein RAB 47.9 57 0.0019 29.5 8.0 44 3-46 97-143 (200)
35 1mh1_A RAC1; GTP-binding, GTPa 47.5 19 0.00065 31.6 4.5 44 2-46 75-122 (186)
36 3t1o_A Gliding protein MGLA; G 47.3 92 0.0031 27.2 9.2 59 2-62 96-162 (198)
37 1z0f_A RAB14, member RAS oncog 47.3 27 0.00092 30.3 5.5 59 3-61 87-148 (179)
38 3dm5_A SRP54, signal recogniti 47.0 19 0.00066 38.8 5.3 62 4-81 213-274 (443)
39 2p5s_A RAS and EF-hand domain 46.1 20 0.00068 32.5 4.6 43 4-46 101-146 (199)
40 2yhs_A FTSY, cell division pro 46.1 13 0.00046 40.7 3.9 82 3-104 411-492 (503)
41 3clv_A RAB5 protein, putative; 45.5 53 0.0018 28.8 7.2 56 3-62 116-175 (208)
42 2hjg_A GTP-binding protein ENG 44.8 25 0.00086 36.9 5.7 42 4-46 258-299 (436)
43 2qu8_A Putative nucleolar GTP- 44.2 23 0.00077 33.1 4.8 43 4-46 109-155 (228)
44 3bwd_D RAC-like GTP-binding pr 43.6 21 0.00072 31.2 4.2 43 3-46 79-125 (182)
45 2bcg_Y Protein YP2, GTP-bindin 43.0 40 0.0014 30.5 6.1 44 3-46 80-126 (206)
46 1z0j_A RAB-22, RAS-related pro 43.0 27 0.00093 29.9 4.8 44 3-46 78-124 (170)
47 3con_A GTPase NRAS; structural 42.9 50 0.0017 29.2 6.7 44 3-46 92-139 (190)
48 2bov_A RAla, RAS-related prote 41.8 90 0.0031 27.7 8.3 43 4-46 86-132 (206)
49 2qag_A Septin-2, protein NEDD5 41.6 42 0.0014 34.5 6.7 41 5-46 147-187 (361)
50 3l0i_B RAS-related protein RAB 41.4 19 0.00063 32.7 3.6 45 2-46 104-151 (199)
51 3dpu_A RAB family protein; roc 41.2 1.2E+02 0.0041 32.6 10.5 43 3-46 121-163 (535)
52 2gj8_A MNME, tRNA modification 40.3 23 0.00078 31.6 3.9 43 4-46 84-128 (172)
53 1rj9_A FTSY, signal recognitio 39.7 27 0.00094 35.3 4.8 63 2-81 219-282 (304)
54 2gco_A H9, RHO-related GTP-bin 39.6 37 0.0013 30.7 5.4 44 2-46 95-142 (201)
55 1xzp_A Probable tRNA modificat 39.5 2.4E+02 0.0082 30.3 12.5 40 4-46 324-363 (482)
56 2qag_B Septin-6, protein NEDD5 39.0 27 0.00094 37.4 4.9 39 6-46 150-189 (427)
57 2q3h_A RAS homolog gene family 38.7 36 0.0012 30.6 5.0 43 3-46 91-137 (201)
58 2a9k_A RAS-related protein RAL 38.1 43 0.0015 29.2 5.3 58 4-61 90-151 (187)
59 1kao_A RAP2A; GTP-binding prot 37.8 41 0.0014 28.5 5.1 43 4-46 75-121 (167)
60 2atx_A Small GTP binding prote 37.6 42 0.0014 29.9 5.3 44 2-46 88-135 (194)
61 1j8m_F SRP54, signal recogniti 37.3 38 0.0013 34.1 5.4 57 4-67 213-269 (297)
62 2x77_A ADP-ribosylation factor 36.9 43 0.0015 29.7 5.2 45 2-46 88-136 (189)
63 2y8e_A RAB-protein 6, GH09086P 36.8 23 0.00079 30.7 3.3 44 3-46 86-132 (179)
64 1ksh_A ARF-like protein 2; sma 35.9 39 0.0013 29.8 4.7 45 2-46 84-132 (186)
65 3lxx_A GTPase IMAP family memb 35.5 22 0.00077 33.5 3.2 55 3-62 112-169 (239)
66 1moz_A ARL1, ADP-ribosylation 35.2 68 0.0023 27.9 6.2 57 3-61 85-145 (183)
67 2rbd_A BH2358 protein; putativ 35.0 1.3E+02 0.0043 27.6 8.2 54 274-331 98-151 (171)
68 1u8z_A RAS-related protein RAL 34.4 50 0.0017 28.0 5.1 43 4-46 76-122 (168)
69 4dcu_A GTP-binding protein ENG 34.3 36 0.0012 36.0 4.9 42 4-46 103-144 (456)
70 1ek0_A Protein (GTP-binding pr 34.0 46 0.0016 28.4 4.8 44 3-46 75-121 (170)
71 3ni0_A Bone marrow stromal ant 34.0 87 0.003 27.1 6.2 45 543-587 50-94 (99)
72 2efe_B Small GTP-binding prote 33.3 46 0.0016 28.9 4.8 44 3-46 84-130 (181)
73 1ky3_A GTP-binding protein YPT 33.0 59 0.002 28.1 5.4 45 2-46 80-131 (182)
74 1m7b_A RND3/RHOE small GTP-bin 32.9 56 0.0019 28.9 5.3 44 2-46 77-124 (184)
75 1gwn_A RHO-related GTP-binding 32.7 54 0.0018 30.2 5.3 44 2-46 98-145 (205)
76 2h57_A ADP-ribosylation factor 32.6 42 0.0014 29.9 4.4 57 3-61 90-152 (190)
77 2hup_A RAS-related protein RAB 32.6 44 0.0015 30.4 4.6 44 3-46 101-147 (201)
78 2v3c_C SRP54, signal recogniti 32.5 42 0.0014 35.7 5.1 52 3-61 210-262 (432)
79 3pqc_A Probable GTP-binding pr 32.5 28 0.00097 30.7 3.2 40 6-46 107-146 (195)
80 1upt_A ARL1, ADP-ribosylation 32.4 73 0.0025 27.2 5.8 45 2-46 73-121 (171)
81 3cpj_B GTP-binding protein YPT 32.4 50 0.0017 30.5 5.1 44 3-46 85-131 (223)
82 3kl4_A SRP54, signal recogniti 32.4 22 0.00076 38.1 2.9 63 3-81 211-273 (433)
83 3q3j_B RHO-related GTP-binding 32.1 58 0.002 30.0 5.4 44 2-46 97-144 (214)
84 1vma_A Cell division protein F 32.0 24 0.00083 35.8 3.0 64 4-83 223-286 (306)
85 1zj6_A ADP-ribosylation factor 32.0 49 0.0017 29.3 4.7 57 3-61 83-143 (187)
86 3iev_A GTP-binding protein ERA 31.8 53 0.0018 32.8 5.4 42 4-46 93-135 (308)
87 3geh_A MNME, tRNA modification 31.4 4.2E+02 0.014 28.1 12.7 41 3-46 303-343 (462)
88 1svi_A GTP-binding protein YSX 31.2 31 0.001 30.7 3.2 41 5-46 107-147 (195)
89 2fv8_A H6, RHO-related GTP-bin 31.2 59 0.002 29.5 5.3 44 2-46 95-142 (207)
90 4dhe_A Probable GTP-binding pr 30.9 36 0.0012 31.1 3.7 40 6-46 118-157 (223)
91 2j0v_A RAC-like GTP-binding pr 30.7 42 0.0014 30.4 4.2 43 3-46 80-126 (212)
92 1zd9_A ADP-ribosylation factor 30.6 42 0.0014 30.0 4.0 45 2-46 89-137 (188)
93 2h17_A ADP-ribosylation factor 30.6 48 0.0017 29.3 4.4 57 2-60 87-147 (181)
94 4bas_A ADP-ribosylation factor 30.5 58 0.002 28.8 5.0 45 2-46 85-140 (199)
95 3reg_A RHO-like small GTPase; 29.8 68 0.0023 28.6 5.3 44 2-46 93-140 (194)
96 3ol1_A Vimentin; structural ge 29.7 1.5E+02 0.0051 26.0 7.4 21 545-565 85-105 (119)
97 3iby_A Ferrous iron transport 28.7 47 0.0016 32.3 4.3 42 2-46 82-123 (256)
98 2hjg_A GTP-binding protein ENG 28.3 53 0.0018 34.4 4.9 69 4-86 83-151 (436)
99 4dcu_A GTP-binding protein ENG 28.1 94 0.0032 32.7 6.8 41 5-46 279-319 (456)
100 1r8s_A ADP-ribosylation factor 28.0 80 0.0027 26.8 5.3 45 2-46 66-114 (164)
101 2ce2_X GTPase HRAS; signaling 27.9 58 0.002 27.4 4.3 43 4-46 75-121 (166)
102 2qag_C Septin-7; cell cycle, c 27.7 50 0.0017 35.0 4.6 39 6-46 141-180 (418)
103 1h65_A Chloroplast outer envel 27.6 47 0.0016 32.1 4.1 43 4-46 120-167 (270)
104 2nzj_A GTP-binding protein REM 27.5 75 0.0025 27.3 5.0 44 3-46 77-124 (175)
105 1t3j_A Mitofusin 1; coiled coi 27.1 1E+02 0.0035 26.6 5.6 37 543-579 47-90 (96)
106 1r2q_A RAS-related protein RAB 26.8 85 0.0029 26.6 5.2 44 3-46 78-124 (170)
107 3t5g_A GTP-binding protein RHE 26.7 77 0.0026 27.6 5.1 44 3-46 77-124 (181)
108 2xtp_A GTPase IMAP family memb 26.7 59 0.002 30.9 4.6 45 2-46 104-152 (260)
109 3szr_A Interferon-induced GTP- 26.7 2.5E+02 0.0086 30.9 10.2 68 138-208 296-365 (608)
110 2j1l_A RHO-related GTP-binding 26.1 63 0.0021 29.7 4.5 43 3-46 105-151 (214)
111 3oes_A GTPase rhebl1; small GT 26.0 66 0.0023 29.0 4.6 45 2-46 94-142 (201)
112 3e70_C DPA, signal recognition 25.8 30 0.001 35.5 2.4 56 4-66 242-297 (328)
113 4gzl_A RAS-related C3 botulinu 25.4 65 0.0022 29.3 4.4 44 2-46 100-147 (204)
114 1z06_A RAS-related protein RAB 25.3 80 0.0027 28.0 4.9 44 3-46 93-140 (189)
115 1c1y_A RAS-related protein RAP 25.3 88 0.003 26.5 5.0 43 4-46 75-121 (167)
116 3kkq_A RAS-related protein M-R 25.2 83 0.0028 27.4 5.0 43 4-46 90-136 (183)
117 2hxs_A RAB-26, RAS-related pro 25.2 49 0.0017 28.7 3.4 44 3-46 79-128 (178)
118 2iwr_A Centaurin gamma 1; ANK 24.6 82 0.0028 27.4 4.8 43 4-46 73-121 (178)
119 2qpt_A EH domain-containing pr 24.4 65 0.0022 35.3 4.9 41 5-46 190-231 (550)
120 3a1s_A Iron(II) transport prot 24.1 52 0.0018 32.0 3.7 40 3-46 83-123 (258)
121 1x3s_A RAS-related protein RAB 24.0 81 0.0028 27.7 4.7 58 3-61 87-148 (195)
122 2e87_A Hypothetical protein PH 23.9 2.1E+02 0.007 28.9 8.3 42 4-46 247-293 (357)
123 2ia9_A Putative septation prot 23.6 42 0.0014 29.2 2.5 43 72-114 41-85 (100)
124 2ffh_A Protein (FFH); SRP54, s 23.3 38 0.0013 36.2 2.6 56 4-66 211-266 (425)
125 1t9h_A YLOQ, probable GTPase E 23.2 55 0.0019 33.3 3.8 42 5-46 88-130 (307)
126 2wkq_A NPH1-1, RAS-related C3 22.8 75 0.0026 30.8 4.5 44 2-46 225-272 (332)
127 1zu4_A FTSY; GTPase, signal re 22.7 82 0.0028 32.0 4.9 81 4-104 228-308 (320)
128 3q85_A GTP-binding protein REM 22.3 1.1E+02 0.0037 26.1 5.1 43 4-46 76-122 (169)
129 3q72_A GTP-binding protein RAD 22.1 93 0.0032 26.5 4.6 44 3-46 72-119 (166)
130 1wms_A RAB-9, RAB9, RAS-relate 21.5 93 0.0032 26.8 4.5 58 3-61 79-143 (177)
131 1z2a_A RAS-related protein RAB 21.4 79 0.0027 26.8 4.0 43 3-46 77-122 (168)
132 2og2_A Putative signal recogni 21.2 51 0.0018 34.3 3.1 52 2-62 275-328 (359)
133 2ged_A SR-beta, signal recogni 21.2 1E+02 0.0035 27.1 4.8 43 4-46 119-169 (193)
134 2fh5_B SR-beta, signal recogni 20.7 79 0.0027 28.6 4.0 43 4-46 79-128 (214)
135 1wf3_A GTP-binding protein; GT 20.0 91 0.0031 31.1 4.6 43 3-46 86-130 (301)
136 2yv5_A YJEQ protein; hydrolase 20.0 68 0.0023 32.0 3.6 39 5-46 81-123 (302)
No 1
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=100.00 E-value=3.9e-39 Score=359.39 Aligned_cols=408 Identities=13% Similarity=0.102 Sum_probs=319.5
Q ss_pred CCCCceEEEEeccCC-chhhhhHHHHHHhcCCCCCceEEEeecccccccCCCchhh--HhhhcCCCcccCCccccCCCCc
Q 007717 1 MQHREFIILCLEDCS-DWSNATTRRVVMQIDPELKRTIIVSTKLDTKIPQFARASD--VEVFLSPPACTLDGFILGGSPF 77 (591)
Q Consensus 1 i~~~n~IILaV~~An-D~ANSdaLklakeVDP~g~RTIgV~TKlD~ml~qfd~gtD--v~~~L~g~~~~L~~~llG~~pF 77 (591)
|+++++|||+|.+++ |+++++++++++++||+|.|||||+||.|++ +.|++ +.++|.|+.++|. +|
T Consensus 181 l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv----~~g~~~~~~~~l~~~~~~l~---~g---- 249 (608)
T 3szr_A 181 IQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLV----DKGTEDKVVDVVRNLVFHLK---KG---- 249 (608)
T ss_dssp TTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGGS----SSSSTTCCCCCC--CCSCCS---SC----
T ss_pred HhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhhc----CcccHHHHHHHHhCcccccC---ce----
Confidence 467899999999999 9999999999999999999999999999999 76764 6799999999999 89
Q ss_pred eEeecCCCCCCCCccccCChHHHHHHHhhhhhhHHHHHHHHh--CCCCchhhhh--hcChhHHHHHHHHHHHHHHHhhhh
Q 007717 78 FTSVPSGRVGTGHDSVYSSNEEFKQAIFIREMEDITSLEEKL--GRSLSKQERS--RIGVSKLRSFLEELLQKRYMDSVP 153 (591)
Q Consensus 78 Fvsvp~~R~g~~~D~v~~s~~~f~~ai~~~~~~d~~~le~~~--~~~~~~~~~~--~~G~~~L~~~Ln~~L~~hyr~~lP 153 (591)
|++|.| |+ |+| +..+. ++.+++..|++| +|+.|+...+ +|||++|+++|+++|.+||+.+||
T Consensus 250 ~~~v~n-r~--~~~--~~~~~---------~~~~~~~~E~~fF~~~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~lP 315 (608)
T 3szr_A 250 YMIVKC-RG--QQE--IQDQL---------SLSEALQREKIFFENHPYFRDLLEEGKATVPCLAEKLTSELITHICKSLP 315 (608)
T ss_dssp EECCCC-SC--TTC--TTTCC---------CHHHHTTTHHHHTTTCTTTSGGGGTCC---CCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEec-Cc--hhh--cccCC---------CHHHHHHHHHHHHccCccccccCccccccHHHHHHHHHHHHHHHHHHhhH
Confidence 999977 65 666 33333 455666778887 8888887764 899999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHhhcccChHHHHHHHHHHHHHHHHHHhHhhcccccCCCcCcccchHHHhhhcCcccCCC
Q 007717 154 MIIPLLEKEYCSTTRKLNEINKELSTLDEVKLKEKGRVFHDLFLTKLSLLLKGTVVAPPDKFGETLQNERINGGAFVGTD 233 (591)
Q Consensus 154 ~i~~~L~~~~~~~~~eL~~~~~el~~~d~~~l~~~~l~~i~~F~~~~~~lI~Gt~~~~P~~~G~Tl~eEr~~~g~~~~~~ 233 (591)
.|+..|++.+..++.+|..++....+ ++...+..++++++.|++.|.++|+|...
T Consensus 316 ~l~~~i~~~l~~~~~el~~lg~~~~~-~~~~~~~~l~~~~~~f~~~~~~~~~g~~~------------------------ 370 (608)
T 3szr_A 316 LLENQIKETHQRITEELQKYGVDIPE-DENEKMFFLIDKVNAFNQDITALMQGEET------------------------ 370 (608)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCCCCC-SHHHHHHHHHHHHHHHHHHHHHHHSSCCC------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHhCCCCc------------------------
Confidence 99999999999999999999987655 55555667889999999999999999732
Q ss_pred CCCCCcccCCCCCccccchhHHHHHHHhhHhhhccc--cCCCCCHHHHHHHhccCCCCCCCc-----hhhHHHHHHHHHH
Q 007717 234 GLQFPHKLIPNAGMRLYGGAQYHRAMAEFRFMVGGI--KCPPITREEIVNACGVEDIHDGTN-----YSRTACVIAVAKA 306 (591)
Q Consensus 234 g~~~~~~~v~~~~~eL~GGAqi~Rif~EF~~~v~~i--~~~~ls~eeI~~Aig~~~~~~g~~-----~~~Afe~Iak~qi 306 (591)
..+.++.++++++++|++|...+... ++....++||++++. ++.|+. |..||+.|+++||
T Consensus 371 ----------~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~g~~~~~f~~~~~fe~lvk~qi 437 (608)
T 3szr_A 371 ----------VGEEDIRLFTRLRHEFHKWSTIIENNFQEGHKILSRKIQKFEN---QAAAAELPGFVNYRTFETIVKQQI 437 (608)
T ss_dssp ----------CCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCSCSSSCSSCTHHHHHHHHHHH
T ss_pred ----------CCCccccHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHH---HccCCCCCCCccHHHHHHHHHHHH
Confidence 12335668899999999987666543 455677899999995 555552 7999999999999
Q ss_pred HHhhcchHHHHHhhHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccc
Q 007717 307 RDTFEPFLHQLGCRLLHILKRLLPISIYLLQKEGEYLSGHEVFLRRVASAFNNFAESTERACREKCMEDLVSTTRYVTWS 386 (591)
Q Consensus 307 r~l~~P~L~cv~~Rl~~V~~eL~~I~~~~~~k~~~~l~ryp~l~~~v~~~~~~fi~e~~~~ck~~~~d~l~s~t~~v~w~ 386 (591)
++|.+|+++|+ ..|++.+..++..++. ..+.+||.|++++.+++.+++++++.+|+++|+++|+++..|++-+
T Consensus 438 ~~l~~Pa~~~v----~~V~~~v~~~~~~~~~---~~f~rfp~L~~~~~~~i~~~~~~~~~~a~~~i~~li~mE~~~~~~d 510 (608)
T 3szr_A 438 KALEEPAVDML----HTVTDMVRLAFTDVSI---KNFEEFFNLHRTAKSKIEDIRAEQEREGEKLIRLHFQMEQIVYGAF 510 (608)
T ss_dssp GGGHHHHHHHH----HHHHHHHHHHHHHHHH---HHHSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHH---HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Confidence 99999999999 7799999999888777 4699999999999999999999999999999999999998776311
Q ss_pred ccCCcchhhhhhhcccCCccchhhccccCCCCccccccccccccccCCCCCcccccccccccCCCCCCccchhhhHHHHh
Q 007717 387 LHNKNRAGLRQFLDSFGSTEQSAVLSNSLSMPLCQESSFVSVANEKHDTKPRTDVKLSQVASGVDSSSSVQTTETRLADL 466 (591)
Q Consensus 387 L~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (591)
-+ |. + .
T Consensus 511 ~~---------~~-----------------------~----------------------------~-------------- 516 (608)
T 3szr_A 511 QS---------SS-----------------------A----------------------------T-------------- 516 (608)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cc---------cc-----------------------C----------------------------C--------------
Confidence 00 00 0 0
Q ss_pred hhhhhhccccCCccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhhHHHHHHHHhhcccchhhhhchhhHHH
Q 007717 467 LDNTLWNRRLAPSSERIVYALVQQIFHGIREYFLASAELKFNCFLLMPVVDKLPALLREDLESAFEGDLDNVFDITNLRH 546 (591)
Q Consensus 467 ~e~~l~~r~l~~~s~~iV~~l~~~iF~~IR~~~~~~~~~Kfn~fFL~P~~~~l~~~lr~~l~~~~d~~l~~vF~~~~~r~ 546 (591)
..+..-+..++.--|.-.+..|+-+|++.-..|.+.-..+.|-..|-..|- .+++++++..=. .
T Consensus 517 -----------~~~~~ei~~~l~sY~~iv~~~~~D~vP~~I~~~lv~~~~~~lq~~l~~~l~--~~~~~~~ll~E~---~ 580 (608)
T 3szr_A 517 -----------DSSMEEIFQHLMAYHQEASKRISSHIPLIIQFFMLQTYGQQLQKAMLQLLQ--DKDTYSWLLKER---S 580 (608)
T ss_dssp -------------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHTTTT--CHHHHHHHTCCC---H
T ss_pred -----------CccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh--cchhHHHHhCCC---H
Confidence 000112556777788888999999999888888766666666555544443 234455555433 3
Q ss_pred HHHhhhhhHHHHHHHHHHHHHH
Q 007717 547 SLSQQKSDTEIEMKRIKKLKEK 568 (591)
Q Consensus 547 ~L~~~~~~l~~e~~~~~~~~~k 568 (591)
...++|.+|..+++++++.++.
T Consensus 581 ~~~~~R~~l~~~~~~L~~A~~~ 602 (608)
T 3szr_A 581 DTSDKRKFLKERLARLTQARRR 602 (608)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777778777776543
No 2
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=100.00 E-value=5.5e-39 Score=365.67 Aligned_cols=315 Identities=18% Similarity=0.208 Sum_probs=261.0
Q ss_pred CCceEEEEeccCC-chhhhhHHHHHHhcCCCCCceEEEeecccccccCCCchhhHhhhcCCCcccCCccccCCCCceEee
Q 007717 3 HREFIILCLEDCS-DWSNATTRRVVMQIDPELKRTIIVSTKLDTKIPQFARASDVEVFLSPPACTLDGFILGGSPFFTSV 81 (591)
Q Consensus 3 ~~n~IILaV~~An-D~ANSdaLklakeVDP~g~RTIgV~TKlD~ml~qfd~gtDv~~~L~g~~~~L~~~llG~~pFFvsv 81 (591)
.+..|||+|-+|+ +|.+.+.+.++++++|.|.++|+|+||.|++ +.++...+++.+..+++. +| |..|
T Consensus 186 ~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvIlVlNKiDlv----~~~~~~~~il~~~~~~l~---lg----~~~V 254 (772)
T 3zvr_A 186 KENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLM----DEGTDARDVLENKLLPLR---RG----YIGV 254 (772)
T ss_dssp STTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEEEEEECTTSS----CTTCCSHHHHTTCSSCCS---SC----EEEC
T ss_pred cCCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEEEEEeCcccC----CcchhhHHHHHHHhhhhh---cc----CCce
Confidence 5678999999999 9999999999999999999999999999999 777777778877666665 55 6555
Q ss_pred cCCCCCCCCccccCChHHHHHHHhhhhhhHHHHHHHH-h-CCCCchhhhhhcChhHHHHHHHHHHHHHHHhhhhhhHHHH
Q 007717 82 PSGRVGTGHDSVYSSNEEFKQAIFIREMEDITSLEEK-L-GRSLSKQERSRIGVSKLRSFLEELLQKRYMDSVPMIIPLL 159 (591)
Q Consensus 82 p~~R~g~~~D~v~~s~~~f~~ai~~~~~~d~~~le~~-~-~~~~~~~~~~~~G~~~L~~~Ln~~L~~hyr~~lP~i~~~L 159 (591)
.+ ++ +.+ ...-+++.+ ...-|.+ | .+|.|..+.+++|+..|++.|.+.|.+||++.||.|+..|
T Consensus 255 V~-iS--A~~--G~GvdeL~e---------aI~~e~~ffpe~P~yd~ltDr~g~~~LaEiLrEkL~~hi~~ELP~l~~~I 320 (772)
T 3zvr_A 255 VN-RS--QKD--IDGKKDITA---------ALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKL 320 (772)
T ss_dssp CC-CC--CEE--SSSSEEHHH---------HHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EE-ec--ccc--cccchhHHH---------HHHHHHHhccCCcchhhhhhcccHHHHHHHHHHHHHHHHHhhCccHHHHH
Confidence 44 22 222 112233333 2222333 3 6788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHhhcccChHHHHHHHHHHHHHHHHHHhHhhcccccCCCcCcccchHHHhhhcCcccCCCCCCCCc
Q 007717 160 EKEYCSTTRKLNEINKELSTLDEVKLKEKGRVFHDLFLTKLSLLLKGTVVAPPDKFGETLQNERINGGAFVGTDGLQFPH 239 (591)
Q Consensus 160 ~~~~~~~~~eL~~~~~el~~~d~~~l~~~~l~~i~~F~~~~~~lI~Gt~~~~P~~~G~Tl~eEr~~~g~~~~~~g~~~~~ 239 (591)
++.+..++.++.+++....+ ++......++++++.|++.|.+.|+|+..
T Consensus 321 ~~~l~s~~vele~~~~~~~~-~~~~~~~~ll~~~~~f~~~~~~~i~G~~~------------------------------ 369 (772)
T 3zvr_A 321 QSQLLSIEKEVDEYKNFRPD-DPARKTKALLQMVQQFAVDFEKRIEGSGD------------------------------ 369 (772)
T ss_dssp HHHHHHHHHHHHHHHHHCCC-SSSCSHHHHHHHHHHHHHHHHHHHTC---------------------------------
T ss_pred HHHHHHHHHHHHHhCCCCCC-ChHHHHHHHHHHHHHHHHHHHHHhCCCCC------------------------------
Confidence 99999999999999987765 33333456899999999999999999843
Q ss_pred ccCCCCCccccchhHHHHHHHh-hHhhhccccCCC-CCHHHHHHHhccCCCCCCCc-----hhhHHHHHHHHHHHHhhcc
Q 007717 240 KLIPNAGMRLYGGAQYHRAMAE-FRFMVGGIKCPP-ITREEIVNACGVEDIHDGTN-----YSRTACVIAVAKARDTFEP 312 (591)
Q Consensus 240 ~~v~~~~~eL~GGAqi~Rif~E-F~~~v~~i~~~~-ls~eeI~~Aig~~~~~~g~~-----~~~Afe~Iak~qir~l~~P 312 (591)
+ .++.+|+|||||+|+||| |+..+.++++++ ++++||++||. ++.|+. |+.||+.|+++||++|.+|
T Consensus 370 -~--~~~~el~ggari~~if~~~f~~~~~~~~~~~~~~~~~I~~~i~---n~~G~~~~lf~p~~~fe~LVk~QI~rl~eP 443 (772)
T 3zvr_A 370 -Q--IDTYELSGGARINRIFHERFPFELVKMEFDEKELRREISYAIK---NIHDIRTGLFTPDLAFEATVKKQVQKLKEP 443 (772)
T ss_dssp ---------CCHHHHHHHHHHTHHHHHHHTTSCCHHHHHHHHHHHHH---HCC------CHHHHHHHHHHHHHHHTTHHH
T ss_pred -C--cCcccCCCCeeeehhHHHHhHHHHhcCCCchhhhHHHHHHHHH---hCCCCCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 1 367899999999999999 999999995555 79999999995 566663 8999999999999999999
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccc
Q 007717 313 FLHQLGCRLLHILKRLLPISIYLLQKEGEYLSGHEVFLRRVASAFNNFAESTERACREKCMEDLVSTTRYVTWSL 387 (591)
Q Consensus 313 ~L~cv~~Rl~~V~~eL~~I~~~~~~k~~~~l~ryp~l~~~v~~~~~~fi~e~~~~ck~~~~d~l~s~t~~v~w~L 387 (591)
+++|| ..|+++|.+|+.+|. +.|.|||.|+++|.+++.++|++++.+|+++|.+.++++..|||++-
T Consensus 444 sl~CV----dlV~~eL~~iv~~~~----~~l~RfP~Lr~ei~~iv~~~Lre~~~~t~~~V~~LId~E~ayintnH 510 (772)
T 3zvr_A 444 SIKCV----DMVVSELTSTIRKCS----EKLQQYPRLREEMERIVTTHIREREGRTKEQVMLLIDIELAYMNTNH 510 (772)
T ss_dssp HHHHH----HHHHHHHHHHHHHHG----GGGTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCTTC
T ss_pred HHHHH----HHHHHHHHHHHHHHH----HHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 99999 789999999977773 47999999999999999999999999999999999999999999997
No 3
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.71 E-value=1.4e-17 Score=173.14 Aligned_cols=174 Identities=17% Similarity=0.258 Sum_probs=126.4
Q ss_pred CCCceEEEEeccCC-chhhhhHHHHHHhcCCCCCceEEEeecccccccCCCchhhHhhhcCCCcccCCccccCCCCceEe
Q 007717 2 QHREFIILCLEDCS-DWSNATTRRVVMQIDPELKRTIIVSTKLDTKIPQFARASDVEVFLSPPACTLDGFILGGSPFFTS 80 (591)
Q Consensus 2 ~~~n~IILaV~~An-D~ANSdaLklakeVDP~g~RTIgV~TKlD~ml~qfd~gtDv~~~L~g~~~~L~~~llG~~pFFvs 80 (591)
.++++|||+|.+++ |+++++++++++++||.|.|||+|+||.|++ +.+++..+++.+..+.+. +| |+.
T Consensus 171 ~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~Dl~----~~~~~~~~~~~~~~~~~~---~~----~~~ 239 (360)
T 3t34_A 171 EKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKIDLM----DKGTDAVEILEGRSFKLK---YP----WVG 239 (360)
T ss_dssp HSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGGGC----CTTCCSHHHHTTSSSCCS---SC----CEE
T ss_pred hcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCccC----CCcccHHHHHcCcccccc---CC----eEE
Confidence 46899999999999 9999999999999999999999999999999 778888888888776655 44 555
Q ss_pred ecCCCCCCCCccccCChHHHHHHHhhhhhhHHHHHHHHh--CCCCchhhhhhcChhHHHHHHHHHHHHHHHhhhhhhHHH
Q 007717 81 VPSGRVGTGHDSVYSSNEEFKQAIFIREMEDITSLEEKL--GRSLSKQERSRIGVSKLRSFLEELLQKRYMDSVPMIIPL 158 (591)
Q Consensus 81 vp~~R~g~~~D~v~~s~~~f~~ai~~~~~~d~~~le~~~--~~~~~~~~~~~~G~~~L~~~Ln~~L~~hyr~~lP~i~~~ 158 (591)
|.+ .|.+++.+ ..+..+....|..| +++.|+...++||+++|++.|+++|.+||+..+|.|+..
T Consensus 240 v~~-----------~s~~~i~~---~~~~~~~~~~e~~ff~~~~~~~~~~~~~g~~~L~~~l~~~l~~~i~~~lp~l~~~ 305 (360)
T 3t34_A 240 VVN-----------RSQADINK---NVDMIAARKREREYFSNTTEYRHLANKMGSEHLAKMLSKHLERVIKSRIPGIQSL 305 (360)
T ss_dssp ECC-----------CCHHHHHT---TCCHHHHHHHHHHHHTTCTTTGGGGGGCSHHHHHHHHHHHHHHHHHTTCTTHHHH
T ss_pred EEE-----------CChHHhcc---CCCHHHHHHHHHHHhcCCCccccchhhcCHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 633 34555542 33455566677776 888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHhhcccChHHHHHHHHHHHHHHHHHH
Q 007717 159 LEKEYCSTTRKLNEINKELSTLDEVKLKEKGRVFHDLFLTKL 200 (591)
Q Consensus 159 L~~~~~~~~~eL~~~~~el~~~d~~~l~~~~l~~i~~F~~~~ 200 (591)
|+..+.+.+.+|.++|..........+-..++.....+.+.+
T Consensus 306 i~~~l~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (360)
T 3t34_A 306 INKTVLELETELSRLGKPIAHGTDSRVDPAIMERRSAISKRL 347 (360)
T ss_dssp HHHHHTTTTCC--------------------CCCTTHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987775332333333444444444444
No 4
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.70 E-value=3e-16 Score=163.20 Aligned_cols=175 Identities=21% Similarity=0.284 Sum_probs=137.4
Q ss_pred CCCceEEEEeccCC-chhhhhHHHHHHhcCCCCCceEEEeecccccccCCCchhhHhhhcCCCcccCCccccCCCCceEe
Q 007717 2 QHREFIILCLEDCS-DWSNATTRRVVMQIDPELKRTIIVSTKLDTKIPQFARASDVEVFLSPPACTLDGFILGGSPFFTS 80 (591)
Q Consensus 2 ~~~n~IILaV~~An-D~ANSdaLklakeVDP~g~RTIgV~TKlD~ml~qfd~gtDv~~~L~g~~~~L~~~llG~~pFFvs 80 (591)
..+++|||+|.+|+ |+++++++++++++||.+.|||+|+||.|++ +.++++.+++.+..+++. +| |..
T Consensus 165 ~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~~~~~~i~V~NK~Dl~----~~~~~~~~~~~~~~~~l~---~~----~~~ 233 (353)
T 2x2e_A 165 TKENCLILAVSPANSDLANSDALKVAKEVDPQGQRTIGVITKLDLM----DEGTDARDVLENKLLPLR---RG----YIG 233 (353)
T ss_dssp TSTTEEEEEEEETTSCGGGCHHHHHHHHHCTTCTTEEEEEECGGGS----CTTCCCHHHHTTCSSCCT---TC----EEE
T ss_pred cCCCeEEEEEecCCCccchhHHHHHHHHhCcCCCceEEEecccccc----CcchhHHHHHhCCccccc---CC----ceE
Confidence 46789999999999 9999999999999999999999999999999 777777788888777666 55 555
Q ss_pred ecCCCCCCCCccccCChHHHHHHHhhhhhhHHHHHHHHh--CCCCchhhhhhcChhHHHHHHHHHHHHHHHhhhhhhHHH
Q 007717 81 VPSGRVGTGHDSVYSSNEEFKQAIFIREMEDITSLEEKL--GRSLSKQERSRIGVSKLRSFLEELLQKRYMDSVPMIIPL 158 (591)
Q Consensus 81 vp~~R~g~~~D~v~~s~~~f~~ai~~~~~~d~~~le~~~--~~~~~~~~~~~~G~~~L~~~Ln~~L~~hyr~~lP~i~~~ 158 (591)
|.+ + |.++-. .-.++.+...-|..| .++.|.....++|+.+|+++|.+.|.+||++.+|.++..
T Consensus 234 v~~-~----------SA~~~~---~i~~l~~~l~~e~~~f~~~~~~~~~~~r~~~~~l~~~l~e~l~~~i~~~lP~l~~~ 299 (353)
T 2x2e_A 234 VVN-R----------SQKDID---GKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNK 299 (353)
T ss_dssp CCC-C----------CHHHHH---TTCCHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEe-C----------Cccccc---ccccHHHHHHHHHHHhccCCcccccHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 533 1 222111 001112222224333 677888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHhhcccChHH--HHHHHHHHHHHHHHHHhH
Q 007717 159 LEKEYCSTTRKLNEINKELSTLDEVK--LKEKGRVFHDLFLTKLSL 202 (591)
Q Consensus 159 L~~~~~~~~~eL~~~~~el~~~d~~~--l~~~~l~~i~~F~~~~~~ 202 (591)
|++.+..++.+|.+++....+ ++.. .+..+++++++|++.|..
T Consensus 300 i~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~f~~~~~~ 344 (353)
T 2x2e_A 300 LQSQLLSIEKEVEEYKNFRPD-KHGTDSRVDEMLRMYHALKEALSI 344 (353)
T ss_dssp HHHHHHHHHHHHHHHHHHCCC-SSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCCCCC-chhhhhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999977654 3222 237789999999999954
No 5
>3ljb_A Interferon-induced GTP-binding protein MX1; four-helix-bundle, antiviral protein; 2.40A {Homo sapiens}
Probab=99.38 E-value=1.5e-12 Score=132.59 Aligned_cols=150 Identities=13% Similarity=0.005 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHHHHHhHhhcccccCCCcCcccchHHHhhhcCcccCCCCCCCCcccCCCCCccccchhHHHHHHHh-hHh
Q 007717 186 KEKGRVFHDLFLTKLSLLLKGTVVAPPDKFGETLQNERINGGAFVGTDGLQFPHKLIPNAGMRLYGGAQYHRAMAE-FRF 264 (591)
Q Consensus 186 ~~~~l~~i~~F~~~~~~lI~Gt~~~~P~~~G~Tl~eEr~~~g~~~~~~g~~~~~~~v~~~~~eL~GGAqi~Rif~E-F~~ 264 (591)
..-+...|+.|.+++..+++|.-. .--||+|+...+.. |..
T Consensus 7 ~~FLidkI~~F~~di~~l~~Gee~--------------------------------------~~~~~~rlf~~lr~eF~~ 48 (271)
T 3ljb_A 7 MFFLIDKVNAFNQDITALMQGEET--------------------------------------VGEEDIRLFTRLRHEFHK 48 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCC--------------------------------------CCTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCceec--------------------------------------ccCCcchHHHHHHHHHHH
Confidence 344667899999999999999622 11178887777776 886
Q ss_pred hhccccC-CC----CCHHHHHHHhccCCCCCCCc-----hhhHHHHHHHHHHHHhhcchHHHHHhhHHHHHHHHHHHHHH
Q 007717 265 MVGGIKC-PP----ITREEIVNACGVEDIHDGTN-----YSRTACVIAVAKARDTFEPFLHQLGCRLLHILKRLLPISIY 334 (591)
Q Consensus 265 ~v~~i~~-~~----ls~eeI~~Aig~~~~~~g~~-----~~~Afe~Iak~qir~l~~P~L~cv~~Rl~~V~~eL~~I~~~ 334 (591)
....++. .. .-.++|.... +.|.|+- |..|||+|+++||++|.+|+++|+ ..|++.|.++...
T Consensus 49 w~~~l~~~~~~~~~~i~~ev~~~e---~~~rGrELPgFv~y~aFE~lVk~qI~~LeePAl~cl----~~V~e~l~~~~~~ 121 (271)
T 3ljb_A 49 WSTIIENNFQEGHKILSRKIQKFE---NQYRGRELPGFVNYRTFETIVKQQIKALEEPAVDML----HTVTDMVRLAFTD 121 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---C---------CTTHHHHHHHHHHHHHTTHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHhhhccchHHHHHHHHHHHH---HHccCcccCCCCChHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 6666522 22 2247777777 5787873 799999999999999999999999 7899999999999
Q ss_pred HHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 007717 335 LLQKEGEYLSGHEVFLRRVASAFNNFAESTERACREKCMEDLVSTTRYVT 384 (591)
Q Consensus 335 ~~~k~~~~l~ryp~l~~~v~~~~~~fi~e~~~~ck~~~~d~l~s~t~~v~ 384 (591)
++.+ .+.+||.|++++.+++.+++++++.+|+++|++.|.++. +|+
T Consensus 122 i~~~---~F~rFpnL~~~i~~~i~~i~~~~~~~Ae~~I~~~~~mE~-~vy 167 (271)
T 3ljb_A 122 VSIK---NFEEFFNLHRTAKSKIEDIRAEQEREGEKLIRLHFQMEQ-IVY 167 (271)
T ss_dssp HHHH---HHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SCC
T ss_pred HHHH---HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccc
Confidence 9884 699999999999999999999999999999999999998 565
No 6
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.06 E-value=6.5e-10 Score=111.89 Aligned_cols=146 Identities=26% Similarity=0.329 Sum_probs=101.8
Q ss_pred CCceEEEEeccCC-chhhhhHHHHHHhcCCCCCceEEEeecccccccCCCchhhHhhhcCCCcccCCccccCCCCceEee
Q 007717 3 HREFIILCLEDCS-DWSNATTRRVVMQIDPELKRTIIVSTKLDTKIPQFARASDVEVFLSPPACTLDGFILGGSPFFTSV 81 (591)
Q Consensus 3 ~~n~IILaV~~An-D~ANSdaLklakeVDP~g~RTIgV~TKlD~ml~qfd~gtDv~~~L~g~~~~L~~~llG~~pFFvsv 81 (591)
..+++||+|.+++ ++.+.+.+.+++.+++.+.++|+|+||.|+. +...++.+++....+.+. .+ |+.+
T Consensus 167 ~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~Dl~----~~~~~~~~~~~~~~~~~~---~~----~~~v 235 (315)
T 1jwy_B 167 KQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLDLM----DKGTDAMEVLTGRVIPLT---LG----FIGV 235 (315)
T ss_dssp STTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTTSS----CSSCCCHHHHTTSSSCCT---TC----EEEC
T ss_pred CCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCcccC----CcchHHHHHHhCCCccCC---CC----eEEE
Confidence 4578999999988 9999999999999999999999999999998 655556677775443322 22 5454
Q ss_pred cCCCCCCCCccccCChHHHHHHHhhhhhhHHHHHHHHh--CCCCchhhhhhcChhHHHHHHHHHHHHHHHhhhhhhHHHH
Q 007717 82 PSGRVGTGHDSVYSSNEEFKQAIFIREMEDITSLEEKL--GRSLSKQERSRIGVSKLRSFLEELLQKRYMDSVPMIIPLL 159 (591)
Q Consensus 82 p~~R~g~~~D~v~~s~~~f~~ai~~~~~~d~~~le~~~--~~~~~~~~~~~~G~~~L~~~Ln~~L~~hyr~~lP~i~~~L 159 (591)
.. + |..... ....+.+....+.++ .++.|..+..++|+..|...|.+.|.+|+++.+|.++..+
T Consensus 236 ~~-~----------sa~~~~---~~~gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lre~l~~~~~~elP~~~~~i 301 (315)
T 1jwy_B 236 IN-R----------SQEDII---AKKSIRESLKSEILYFKNHPIYKSIANRSGTAYLSKTLNKLLMFHIRDTLPDLKVKV 301 (315)
T ss_dssp CC-C----------CHHHHS---SSCCHHHHHHHHHHHHHTCTTGGGSGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ec-C----------Chhhhc---cCCCHHHHHHHHHHHHhCCCccccchhccCHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 33 2 222110 012333443443333 4556788889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 007717 160 EKEYCSTTRKLNEI 173 (591)
Q Consensus 160 ~~~~~~~~~eL~~~ 173 (591)
++.+.+.+++|.++
T Consensus 302 ~~~l~~~~~~l~~~ 315 (315)
T 1jwy_B 302 SKMLSDVQGELSTY 315 (315)
T ss_dssp HHHTC---------
T ss_pred HHHHHHHHHHHHhC
Confidence 99888888887654
No 7
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.00 E-value=2.7e-09 Score=106.24 Aligned_cols=137 Identities=21% Similarity=0.258 Sum_probs=97.1
Q ss_pred CCCceEEEEeccCC-chhhhhHHHHHHhcCCCCCceEEEeecccccccCCCchhhHhhhcCCCcccCCccccCC-CCceE
Q 007717 2 QHREFIILCLEDCS-DWSNATTRRVVMQIDPELKRTIIVSTKLDTKIPQFARASDVEVFLSPPACTLDGFILGG-SPFFT 79 (591)
Q Consensus 2 ~~~n~IILaV~~An-D~ANSdaLklakeVDP~g~RTIgV~TKlD~ml~qfd~gtDv~~~L~g~~~~L~~~llG~-~pFFv 79 (591)
...+++||+|-+|+ ++.+.+++++++.++|.+.++|+|+||.|+. +.+.++.+++.+..+.+. .|. ..|++
T Consensus 160 ~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~i~V~NK~Dl~----~~~~~~~~~~~~~~~~~~---~~~~~v~~~ 232 (299)
T 2aka_B 160 TKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLM----DEGTDARDVLENKLLPLR---RGYIGVVNR 232 (299)
T ss_dssp TSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGGGS----CTTCCCHHHHTTCSSCCT---TCEEECCCC
T ss_pred cCCCeEEEEEecCCcchhhhHHHHHHHHhCCCCCeEEEEEEccccC----CCCchHHHHHhCCcCcCC---CCcEEEECC
Confidence 35678999999998 9999999999999999999999999999998 655556677776544433 231 11223
Q ss_pred eecCCCCCCCCccccCChHHHHHHHhhhhhhHHHHHHHHhCCCCchhhhhhcChhHHHHHHHHHHHHHHHhhhhhhHHHH
Q 007717 80 SVPSGRVGTGHDSVYSSNEEFKQAIFIREMEDITSLEEKLGRSLSKQERSRIGVSKLRSFLEELLQKRYMDSVPMIIPLL 159 (591)
Q Consensus 80 svp~~R~g~~~D~v~~s~~~f~~ai~~~~~~d~~~le~~~~~~~~~~~~~~~G~~~L~~~Ln~~L~~hyr~~lP~i~~~L 159 (591)
|--.|.+ -+++.+++.. +.+-.+....+.....++|+..|+.+|.+.|.+|+++.+|.++..+
T Consensus 233 SA~~~~g----------i~~l~~~l~~-------~~~~~~~~~~~~~~~~r~~~~~l~~~l~~~l~~~~~~~lP~~~~~i 295 (299)
T 2aka_B 233 SQKDIDG----------KKDITAALAA-------ERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKL 295 (299)
T ss_dssp CCBCTTS----------CBCHHHHHHH-------HHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Chhhccc----------cccHHHHHHH-------HHHHHhcCCccccchhhhCHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3322221 1223332221 1111114566888889999999999999999999999999999877
Q ss_pred HHH
Q 007717 160 EKE 162 (591)
Q Consensus 160 ~~~ 162 (591)
+++
T Consensus 296 ~~~ 298 (299)
T 2aka_B 296 QSQ 298 (299)
T ss_dssp HHH
T ss_pred Hhh
Confidence 753
No 8
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=94.57 E-value=0.23 Score=56.32 Aligned_cols=41 Identities=12% Similarity=0.058 Sum_probs=30.5
Q ss_pred ceEEEEeccCC-chhhhhHHHHHHhcCCCCCceEEEeeccccc
Q 007717 5 EFIILCLEDCS-DWSNATTRRVVMQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 5 n~IILaV~~An-D~ANSdaLklakeVDP~g~RTIgV~TKlD~m 46 (591)
++||+ |-+++ .+..++..-+.+.+.+.+.++|+|+||.|+.
T Consensus 202 D~vL~-Vvda~~~~s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~ 243 (695)
T 2j69_A 202 HAILF-VMRASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQV 243 (695)
T ss_dssp SEEEE-EEETTSTTCHHHHHHHHHHTTTSCCCEEEEEECGGGG
T ss_pred CEEEE-EEeCCCccchhHHHHHHHHHHhhCCCEEEEEECcccc
Confidence 44555 44555 7777776556667888888999999999997
No 9
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=71.99 E-value=12 Score=33.96 Aligned_cols=44 Identities=18% Similarity=0.171 Sum_probs=32.8
Q ss_pred CCceEEEEeccCC-c-hhh-hhHHHHHHhcCCCCCceEEEeeccccc
Q 007717 3 HREFIILCLEDCS-D-WSN-ATTRRVVMQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 3 ~~n~IILaV~~An-D-~AN-SdaLklakeVDP~g~RTIgV~TKlD~m 46 (591)
.-+++|+++...+ + +.+ ..++..+++.-+.....|.|.||.|+.
T Consensus 92 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 138 (213)
T 3cph_A 92 GAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME 138 (213)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCS
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 4578888888776 3 222 246777777777788899999999994
No 10
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=71.84 E-value=6.6 Score=33.99 Aligned_cols=44 Identities=18% Similarity=0.164 Sum_probs=31.7
Q ss_pred CCceEEEEeccCC-c-hhh-hhHHHHHHhcCCCCCceEEEeeccccc
Q 007717 3 HREFIILCLEDCS-D-WSN-ATTRRVVMQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 3 ~~n~IILaV~~An-D-~AN-SdaLklakeVDP~g~RTIgV~TKlD~m 46 (591)
.-+++|+++...+ + +.+ ..++..+++..+.+...|.|.||.|+.
T Consensus 75 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 121 (170)
T 1g16_A 75 GAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME 121 (170)
T ss_dssp TEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCC
Confidence 3467888887776 3 222 246777777777788899999999994
No 11
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=71.47 E-value=11 Score=33.79 Aligned_cols=44 Identities=11% Similarity=0.107 Sum_probs=32.3
Q ss_pred CCceEEEEeccCC-c-hhh-hhHHHHHHhcCCCCCceEEEeeccccc
Q 007717 3 HREFIILCLEDCS-D-WSN-ATTRRVVMQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 3 ~~n~IILaV~~An-D-~AN-SdaLklakeVDP~g~RTIgV~TKlD~m 46 (591)
.-+++|+++...+ + +.+ ..++..+++..+.+...|.|.||.|+.
T Consensus 94 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 140 (189)
T 2gf9_A 94 GAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLE 140 (189)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence 4577888887766 3 222 236667777777788899999999997
No 12
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=66.01 E-value=23 Score=31.09 Aligned_cols=45 Identities=11% Similarity=0.045 Sum_probs=29.4
Q ss_pred CCCceEEEEeccCC-c-hhh-hhHHHHHHhcCC-CCCceEEEeeccccc
Q 007717 2 QHREFIILCLEDCS-D-WSN-ATTRRVVMQIDP-ELKRTIIVSTKLDTK 46 (591)
Q Consensus 2 ~~~n~IILaV~~An-D-~AN-SdaLklakeVDP-~g~RTIgV~TKlD~m 46 (591)
..-+++|+++...+ + +.+ ..++..++..-. .+...|.|.||.|+.
T Consensus 92 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 140 (195)
T 3bc1_A 92 RDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLE 140 (195)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCG
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 45578888887776 2 222 234444444333 567899999999997
No 13
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=63.09 E-value=29 Score=31.68 Aligned_cols=44 Identities=18% Similarity=0.166 Sum_probs=27.1
Q ss_pred CCceEEEEeccCCchhhhhHHHHHHhcCC----CCCceEEEeeccccc
Q 007717 3 HREFIILCLEDCSDWSNATTRRVVMQIDP----ELKRTIIVSTKLDTK 46 (591)
Q Consensus 3 ~~n~IILaV~~AnD~ANSdaLklakeVDP----~g~RTIgV~TKlD~m 46 (591)
.-+++|+++...+...-........++-- .+...|+|.||.|+.
T Consensus 107 ~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~ 154 (217)
T 2f7s_A 107 DAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLP 154 (217)
T ss_dssp TCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCG
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccc
Confidence 45678888876662222222233333432 567789999999986
No 14
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=61.89 E-value=16 Score=32.73 Aligned_cols=44 Identities=14% Similarity=0.060 Sum_probs=33.2
Q ss_pred CCceEEEEeccCC-ch-hh-hhHHHHHHhcCCCCCceEEEeeccccc
Q 007717 3 HREFIILCLEDCS-DW-SN-ATTRRVVMQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 3 ~~n~IILaV~~An-D~-AN-SdaLklakeVDP~g~RTIgV~TKlD~m 46 (591)
.-+++|+++...+ +- .+ ..+++.+++..+.....|.|.||.|+.
T Consensus 95 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 141 (191)
T 3dz8_A 95 GAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDME 141 (191)
T ss_dssp TCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 4567888888776 22 11 247788888888888999999999986
No 15
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=61.50 E-value=22 Score=32.10 Aligned_cols=44 Identities=11% Similarity=0.054 Sum_probs=31.8
Q ss_pred CCceEEEEeccCC-ch-hh-hhHHHHHHhcCCCCCceEEEeeccccc
Q 007717 3 HREFIILCLEDCS-DW-SN-ATTRRVVMQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 3 ~~n~IILaV~~An-D~-AN-SdaLklakeVDP~g~RTIgV~TKlD~m 46 (591)
.-+++|+++...+ +- .+ ..++..+++..+.....|+|.||.|+.
T Consensus 80 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 126 (203)
T 1zbd_A 80 GAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDME 126 (203)
T ss_dssp GCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCT
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccC
Confidence 3467888887766 31 21 236667777777788899999999996
No 16
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=61.11 E-value=25 Score=31.54 Aligned_cols=44 Identities=9% Similarity=0.058 Sum_probs=32.3
Q ss_pred CCceEEEEeccCC-c-hhh-hhHHHHHHhcCCCCCceEEEeeccccc
Q 007717 3 HREFIILCLEDCS-D-WSN-ATTRRVVMQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 3 ~~n~IILaV~~An-D-~AN-SdaLklakeVDP~g~RTIgV~TKlD~m 46 (591)
.-+++|+++...+ + +.+ ..++..+++..+.+...|.|.||.|+.
T Consensus 93 ~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~ 139 (191)
T 2a5j_A 93 GAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE 139 (191)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccC
Confidence 4567888888776 3 222 246667777767778899999999996
No 17
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=60.69 E-value=30 Score=30.43 Aligned_cols=45 Identities=11% Similarity=0.003 Sum_probs=32.4
Q ss_pred CCCceEEEEeccCC-ch-hh-hhHHHHHHhcCCCCCceEEEeeccccc
Q 007717 2 QHREFIILCLEDCS-DW-SN-ATTRRVVMQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 2 ~~~n~IILaV~~An-D~-AN-SdaLklakeVDP~g~RTIgV~TKlD~m 46 (591)
+.-+++|+++...+ +- .+ ..++...+...+.+...|.|.||.|+.
T Consensus 81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 128 (186)
T 2bme_A 81 RGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLD 128 (186)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred hcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 45678888888776 32 11 236666677766788899999999996
No 18
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=60.42 E-value=27 Score=31.11 Aligned_cols=44 Identities=9% Similarity=-0.022 Sum_probs=31.2
Q ss_pred CCceEEEEeccCC-ch-hh-hhHHHHHHhcCCCCCceEEEeeccccc
Q 007717 3 HREFIILCLEDCS-DW-SN-ATTRRVVMQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 3 ~~n~IILaV~~An-D~-AN-SdaLklakeVDP~g~RTIgV~TKlD~m 46 (591)
.-+++|+++...+ +- .+ ..++..+++..+.+...|.|.||.|+.
T Consensus 97 ~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~ 143 (193)
T 2oil_A 97 GAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLS 143 (193)
T ss_dssp TCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGG
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcc
Confidence 4567888887766 21 11 246666666666778899999999997
No 19
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=59.99 E-value=8.9 Score=33.60 Aligned_cols=54 Identities=17% Similarity=0.155 Sum_probs=35.8
Q ss_pred CCceEEEEeccCCchhhhhHHHHHHhcCCCCCceEEEeecccccccCCCc-hhhHhhhcC
Q 007717 3 HREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKLDTKIPQFAR-ASDVEVFLS 61 (591)
Q Consensus 3 ~~n~IILaV~~AnD~ANSdaLklakeVDP~g~RTIgV~TKlD~ml~qfd~-gtDv~~~L~ 61 (591)
.-+++|+++. ++|-....++...+.+.......|.|.||.|+. +. ..++...+.
T Consensus 78 ~~d~~i~v~d-~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~----~~~~~~~~~~~~ 132 (178)
T 2lkc_A 78 VTDIVILVVA-ADDGVMPQTVEAINHAKAANVPIIVAINKMDKP----EANPDRVMQELM 132 (178)
T ss_dssp CCCEEEEEEE-TTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSS----CSCHHHHHHHHT
T ss_pred hCCEEEEEEE-CCCCCcHHHHHHHHHHHhCCCCEEEEEECccCC----cCCHHHHHHHHH
Confidence 3467888885 443234556677777766677899999999997 42 344555553
No 20
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=59.05 E-value=34 Score=30.03 Aligned_cols=45 Identities=16% Similarity=0.141 Sum_probs=29.4
Q ss_pred CCCceEEEEeccCC-c-hhhh-hHHHHHHhcCCCCCceEEEeeccccc
Q 007717 2 QHREFIILCLEDCS-D-WSNA-TTRRVVMQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 2 ~~~n~IILaV~~An-D-~ANS-daLklakeVDP~g~RTIgV~TKlD~m 46 (591)
..-+++|+++..++ + +.+. .++..+++..+.+...|.|.||.|+.
T Consensus 79 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 126 (183)
T 2fu5_C 79 RGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVN 126 (183)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CC
T ss_pred hcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCC
Confidence 34567888888776 3 2222 36666666655677889999999996
No 21
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=58.76 E-value=15 Score=31.40 Aligned_cols=52 Identities=13% Similarity=0.244 Sum_probs=33.3
Q ss_pred CCCceEEEEeccCCchhh--hhHHHHHHhcCCCCCceEEEeecccccccCCCchhhHhhhc
Q 007717 2 QHREFIILCLEDCSDWSN--ATTRRVVMQIDPELKRTIIVSTKLDTKIPQFARASDVEVFL 60 (591)
Q Consensus 2 ~~~n~IILaV~~AnD~AN--SdaLklakeVDP~g~RTIgV~TKlD~ml~qfd~gtDv~~~L 60 (591)
+.-+++|+++...+-+.. ....++.++ .....|.|.||.|+. +...++.++.
T Consensus 78 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~----~~~~~~~~~~ 131 (161)
T 2dyk_A 78 EDAEVVLFAVDGRAELTQADYEVAEYLRR---KGKPVILVATKVDDP----KHELYLGPLY 131 (161)
T ss_dssp TTCSEEEEEEESSSCCCHHHHHHHHHHHH---HTCCEEEEEECCCSG----GGGGGCGGGG
T ss_pred HhCCEEEEEEECCCcccHhHHHHHHHHHh---cCCCEEEEEECcccc----cchHhHHHHH
Confidence 456788888887763332 334455555 345689999999998 5444444544
No 22
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=58.75 E-value=39 Score=29.24 Aligned_cols=43 Identities=19% Similarity=0.077 Sum_probs=27.9
Q ss_pred CCceEEEEeccCC-c-hhh-hhHHHHHHhcCCCCCceEEEeeccccc
Q 007717 3 HREFIILCLEDCS-D-WSN-ATTRRVVMQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 3 ~~n~IILaV~~An-D-~AN-SdaLklakeVDP~g~RTIgV~TKlD~m 46 (591)
.-+++|+++...+ + +.+ ..++...++.-| ....|.|.||.|+.
T Consensus 81 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~ 126 (181)
T 3tw8_B 81 GTHGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNKNDDP 126 (181)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHHHHHHHHHCT-TSEEEEEEECTTCG
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECCCCc
Confidence 4577888887766 2 222 225555555433 56789999999976
No 23
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=58.37 E-value=16 Score=32.96 Aligned_cols=60 Identities=12% Similarity=0.071 Sum_probs=38.9
Q ss_pred CCceEEEEeccCC-c-hhh-hhHHHHHHhcCCCCCceEEEeecccccccCCCchhhHhhhcCC
Q 007717 3 HREFIILCLEDCS-D-WSN-ATTRRVVMQIDPELKRTIIVSTKLDTKIPQFARASDVEVFLSP 62 (591)
Q Consensus 3 ~~n~IILaV~~An-D-~AN-SdaLklakeVDP~g~RTIgV~TKlD~ml~qfd~gtDv~~~L~g 62 (591)
.-+++|+++...+ + +.+ ..++..+++..+.+...|.|.||.|+.-+.--.-.++..+...
T Consensus 95 ~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~ 157 (192)
T 2fg5_A 95 GSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAES 157 (192)
T ss_dssp TCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHT
T ss_pred cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHH
Confidence 4567888887666 3 122 3467777787788889999999999961111123455566543
No 24
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=58.32 E-value=11 Score=32.67 Aligned_cols=45 Identities=16% Similarity=0.128 Sum_probs=31.7
Q ss_pred CCCceEEEEeccCC-c-hhh-hhHHHHHHhcCCCCCceEEEeeccccc
Q 007717 2 QHREFIILCLEDCS-D-WSN-ATTRRVVMQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 2 ~~~n~IILaV~~An-D-~AN-SdaLklakeVDP~g~RTIgV~TKlD~m 46 (591)
..-+++|+++...+ + +.+ ..+++.+++..+.....|.|.||.|+.
T Consensus 77 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 124 (170)
T 1z08_A 77 RDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 124 (170)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGG
T ss_pred ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccc
Confidence 34577888887766 3 222 235666677666677889999999997
No 25
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=54.54 E-value=37 Score=31.23 Aligned_cols=45 Identities=18% Similarity=0.219 Sum_probs=33.0
Q ss_pred CCCceEEEEeccCC-c-hhh-hhHHHHHHhcCCCCCceEEEeeccccc
Q 007717 2 QHREFIILCLEDCS-D-WSN-ATTRRVVMQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 2 ~~~n~IILaV~~An-D-~AN-SdaLklakeVDP~g~RTIgV~TKlD~m 46 (591)
..-+++|+++...+ + +.+ ..|++.+++..+.+.-.|.|.||.|+.
T Consensus 97 ~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 144 (201)
T 2ew1_A 97 RSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLA 144 (201)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 34577888887766 2 222 357777777777778889999999996
No 26
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=53.85 E-value=14 Score=35.97 Aligned_cols=41 Identities=10% Similarity=0.062 Sum_probs=32.9
Q ss_pred CceEEEEeccCC-chhhhhHHHHHHhcCCCCCceEEEeeccccc
Q 007717 4 REFIILCLEDCS-DWSNATTRRVVMQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 4 ~n~IILaV~~An-D~ANSdaLklakeVDP~g~RTIgV~TKlD~m 46 (591)
.+++|++|.+++ .+...+ ..+.+++.. +.-.|.|+||.|+.
T Consensus 116 ~~~~l~~i~~~~~~~~~~d-~~~l~~l~~-~~pvi~V~nK~D~~ 157 (274)
T 3t5d_A 116 VQCCLYFIAPSGHGLKPLD-IEFMKRLHE-KVNIIPLIAKADTL 157 (274)
T ss_dssp CCEEEEEECSCCSSCCHHH-HHHHHHHTT-TSCEEEEESSGGGS
T ss_pred eeEEEEEecCCCCCCCHHH-HHHHHHHhc-cCCEEEEEeccCCC
Confidence 458999999998 555444 667777776 78899999999997
No 27
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=53.51 E-value=8.4 Score=31.80 Aligned_cols=47 Identities=13% Similarity=0.270 Sum_probs=35.9
Q ss_pred HHHhhcccchhhhhchhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 007717 526 DLESAFEGDLDNVFDITNLRHSLSQQKSDTEIEMKRIKKLKEKFKLI 572 (591)
Q Consensus 526 ~l~~~~d~~l~~vF~~~~~r~~L~~~~~~l~~e~~~~~~~~~kF~~i 572 (591)
+|..+-....+++..-......|+.+.++.+.++..++.-.+||+++
T Consensus 23 eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrSV 69 (72)
T 3nmd_A 23 DLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYRSV 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34444444455566667788999999999999999999999999654
No 28
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=53.08 E-value=14 Score=32.45 Aligned_cols=44 Identities=9% Similarity=0.156 Sum_probs=33.1
Q ss_pred CCceEEEEeccCC-c-hhh-hhHHHHHHhcCCCCCceEEEeeccccc
Q 007717 3 HREFIILCLEDCS-D-WSN-ATTRRVVMQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 3 ~~n~IILaV~~An-D-~AN-SdaLklakeVDP~g~RTIgV~TKlD~m 46 (591)
.-+++|+++...+ + +.+ ..++..+++..+.+...|.|.||.|+.
T Consensus 83 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 129 (180)
T 2g6b_A 83 DAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSA 129 (180)
T ss_dssp GCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTT
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccC
Confidence 3467888887776 3 222 346777888777888999999999997
No 29
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=51.86 E-value=16 Score=32.96 Aligned_cols=43 Identities=19% Similarity=0.282 Sum_probs=32.6
Q ss_pred CceEEEEeccCC-c-hhh-hhHHHHHHhcCCCCCceEEEeeccccc
Q 007717 4 REFIILCLEDCS-D-WSN-ATTRRVVMQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 4 ~n~IILaV~~An-D-~AN-SdaLklakeVDP~g~RTIgV~TKlD~m 46 (591)
-+++|+++...+ + +.+ ..|++.+++..+.+...|.|.||.|+.
T Consensus 99 ~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~ 144 (192)
T 2il1_A 99 AKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCE 144 (192)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 467888887766 2 222 346678888888889999999999986
No 30
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=51.65 E-value=24 Score=31.31 Aligned_cols=44 Identities=16% Similarity=0.122 Sum_probs=32.8
Q ss_pred CCceEEEEeccCC-ch-hh-hhHHHHHHhcCCCCCceEEEeeccccc
Q 007717 3 HREFIILCLEDCS-DW-SN-ATTRRVVMQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 3 ~~n~IILaV~~An-D~-AN-SdaLklakeVDP~g~RTIgV~TKlD~m 46 (591)
.-+++|+++...+ +- .+ ..++..+++.-+.....|.|.||.|+.
T Consensus 88 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~ 134 (196)
T 3tkl_A 88 GAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 134 (196)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred hCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence 4577888887776 21 11 347777777777888999999999987
No 31
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=51.25 E-value=23 Score=32.44 Aligned_cols=44 Identities=16% Similarity=0.068 Sum_probs=33.1
Q ss_pred CCceEEEEeccCC-chhh--hhHHHHHHhcCCCCCceEEEeeccccc
Q 007717 3 HREFIILCLEDCS-DWSN--ATTRRVVMQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 3 ~~n~IILaV~~An-D~AN--SdaLklakeVDP~g~RTIgV~TKlD~m 46 (591)
.-+++|+++...+ +--. ..|++.++..-+.+...|.|.||.|+.
T Consensus 84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (218)
T 4djt_A 84 GASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIK 130 (218)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC
T ss_pred cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 4578888888776 3211 246677787778888999999999987
No 32
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=48.90 E-value=44 Score=29.79 Aligned_cols=45 Identities=18% Similarity=0.284 Sum_probs=30.1
Q ss_pred CCCceEEEEeccCC-c-hhh-hhHHHHHHhcCC---CCCceEEEeeccccc
Q 007717 2 QHREFIILCLEDCS-D-WSN-ATTRRVVMQIDP---ELKRTIIVSTKLDTK 46 (591)
Q Consensus 2 ~~~n~IILaV~~An-D-~AN-SdaLklakeVDP---~g~RTIgV~TKlD~m 46 (591)
..-+++|+++...+ + +.+ ..++..+++.-+ .+...|.|.||.|+.
T Consensus 95 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 145 (208)
T 2yc2_C 95 NGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLP 145 (208)
T ss_dssp CCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC---
T ss_pred hhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccc
Confidence 34578888888776 3 222 246667777666 688899999999997
No 33
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=48.39 E-value=44 Score=28.88 Aligned_cols=43 Identities=12% Similarity=0.135 Sum_probs=28.7
Q ss_pred CceEEEEeccCC-c-hhhh-hHH-HHHHhcCCCCCceEEEeeccccc
Q 007717 4 REFIILCLEDCS-D-WSNA-TTR-RVVMQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 4 ~n~IILaV~~An-D-~ANS-daL-klakeVDP~g~RTIgV~TKlD~m 46 (591)
-+++|+++...+ + +.+. .++ .+.+...+.+...|.|.||.|+.
T Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 127 (181)
T 2fn4_A 81 GHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLE 127 (181)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGG
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 457777776555 2 1111 233 34466678888999999999997
No 34
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=47.87 E-value=57 Score=29.53 Aligned_cols=44 Identities=14% Similarity=0.068 Sum_probs=31.2
Q ss_pred CCceEEEEeccCC-c-hhh-hhHHHHHHhcCCCCCceEEEeeccccc
Q 007717 3 HREFIILCLEDCS-D-WSN-ATTRRVVMQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 3 ~~n~IILaV~~An-D-~AN-SdaLklakeVDP~g~RTIgV~TKlD~m 46 (591)
.-+++|+++...+ + +.+ ..++..+++..+.+.-.|.|.||.|+.
T Consensus 97 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 143 (200)
T 2o52_A 97 GAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLD 143 (200)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGG
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcc
Confidence 4578888888776 3 222 235666666666677899999999996
No 35
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=47.49 E-value=19 Score=31.58 Aligned_cols=44 Identities=25% Similarity=0.354 Sum_probs=33.3
Q ss_pred CCCceEEEEeccCC--chhhh--hHHHHHHhcCCCCCceEEEeeccccc
Q 007717 2 QHREFIILCLEDCS--DWSNA--TTRRVVMQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 2 ~~~n~IILaV~~An--D~ANS--daLklakeVDP~g~RTIgV~TKlD~m 46 (591)
..-+++|+++...+ -+.+. .++..+++..| ....|.|.||.|+.
T Consensus 75 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~ 122 (186)
T 1mh1_A 75 PQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLR 122 (186)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST-TSCEEEEEECHHHH
T ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCC-CCCEEEEeEccccc
Confidence 34578888888776 24444 47777887766 67789999999998
No 36
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=47.27 E-value=92 Score=27.23 Aligned_cols=59 Identities=15% Similarity=0.170 Sum_probs=34.8
Q ss_pred CCCceEEEEeccCCc-hh-hhh----HHHHHHhc--CCCCCceEEEeecccccccCCCchhhHhhhcCC
Q 007717 2 QHREFIILCLEDCSD-WS-NAT----TRRVVMQI--DPELKRTIIVSTKLDTKIPQFARASDVEVFLSP 62 (591)
Q Consensus 2 ~~~n~IILaV~~AnD-~A-NSd----aLklakeV--DP~g~RTIgV~TKlD~ml~qfd~gtDv~~~L~g 62 (591)
..-+++|+++..++. .. +.. ..+...++ .+.....|.|.||.|+. ++ -...++..++..
T Consensus 96 ~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~-~~-~~~~~~~~~~~~ 162 (198)
T 3t1o_A 96 RGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLP-DA-LPVEMVRAVVDP 162 (198)
T ss_dssp TTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTST-TC-CCHHHHHHHHCT
T ss_pred hcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcc-cc-cCHHHHHHHHHh
Confidence 345788888877631 11 111 12233344 55677899999999986 22 234556677654
No 37
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=47.27 E-value=27 Score=30.25 Aligned_cols=59 Identities=7% Similarity=0.022 Sum_probs=36.6
Q ss_pred CCceEEEEeccCC-ch-hh-hhHHHHHHhcCCCCCceEEEeecccccccCCCchhhHhhhcC
Q 007717 3 HREFIILCLEDCS-DW-SN-ATTRRVVMQIDPELKRTIIVSTKLDTKIPQFARASDVEVFLS 61 (591)
Q Consensus 3 ~~n~IILaV~~An-D~-AN-SdaLklakeVDP~g~RTIgV~TKlD~ml~qfd~gtDv~~~L~ 61 (591)
.-+++|+++...+ +- .+ ..+++.+++..+.+...|.|.||.|+.-+.--.-.++..++.
T Consensus 87 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 148 (179)
T 1z0f_A 87 GAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAE 148 (179)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHH
T ss_pred cCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHH
Confidence 3467888888776 22 21 136666777766678899999999996111111234555554
No 38
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=46.97 E-value=19 Score=38.76 Aligned_cols=62 Identities=15% Similarity=0.208 Sum_probs=44.8
Q ss_pred CceEEEEeccCCchhhhhHHHHHHhcCCCCCceEEEeecccccccCCCchhhHhhhcCCCcccCCccccCCCCceEee
Q 007717 4 REFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKLDTKIPQFARASDVEVFLSPPACTLDGFILGGSPFFTSV 81 (591)
Q Consensus 4 ~n~IILaV~~AnD~ANSdaLklakeVDP~g~RTIgV~TKlD~ml~qfd~gtDv~~~L~g~~~~L~~~llG~~pFFvsv 81 (591)
|..++|-|.+.. ..++...|+..++...=|..|+||+|.- +++..+..+..-.+.|+. |+|+
T Consensus 213 pd~vlLVvDA~~---gq~a~~~a~~f~~~~~i~gVIlTKlD~~----~~gG~~ls~~~~~g~PI~---------fig~ 274 (443)
T 3dm5_A 213 PHEVILVIDGTI---GQQAYNQALAFKEATPIGSIIVTKLDGS----AKGGGALSAVAATGAPIK---------FIGT 274 (443)
T ss_dssp CSEEEEEEEGGG---GGGHHHHHHHHHHSCTTEEEEEECCSSC----SSHHHHHHHHHTTCCCEE---------EEEC
T ss_pred CceEEEEEeCCC---chhHHHHHHHHHhhCCCeEEEEECCCCc----ccccHHHHHHHHHCCCEE---------EEEc
Confidence 455666665543 2456778888888888889999999999 888777776655455443 8887
No 39
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=46.14 E-value=20 Score=32.46 Aligned_cols=43 Identities=14% Similarity=0.180 Sum_probs=29.4
Q ss_pred CceEEEEeccCC-c-hhh-hhHHHHHHhcCCCCCceEEEeeccccc
Q 007717 4 REFIILCLEDCS-D-WSN-ATTRRVVMQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 4 ~n~IILaV~~An-D-~AN-SdaLklakeVDP~g~RTIgV~TKlD~m 46 (591)
-+++|+++...+ + +.+ ..+++.+++..+.+...|+|.||.|+.
T Consensus 101 ~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 146 (199)
T 2p5s_A 101 ADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIR 146 (199)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGH
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence 467888887766 2 222 236777777777778899999999996
No 40
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=46.11 E-value=13 Score=40.72 Aligned_cols=82 Identities=16% Similarity=0.178 Sum_probs=53.3
Q ss_pred CCceEEEEeccCCchhhhhHHHHHHhcCCCCCceEEEeecccccccCCCchhhHhhhcCCCcccCCccccCCCCceEeec
Q 007717 3 HREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKLDTKIPQFARASDVEVFLSPPACTLDGFILGGSPFFTSVP 82 (591)
Q Consensus 3 ~~n~IILaV~~AnD~ANSdaLklakeVDP~g~RTIgV~TKlD~ml~qfd~gtDv~~~L~g~~~~L~~~llG~~pFFvsvp 82 (591)
.|..++|++.+..- -+++.+++.......-|..|+||+|-- .+|..+..++..-+.|+. |+|+.
T Consensus 411 ~P~evLLvLDattG---q~al~~ak~f~~~~~itgvIlTKLD~t----akgG~~lsi~~~~~~PI~---------fig~G 474 (503)
T 2yhs_A 411 APHEVMLTIDASTG---QNAVSQAKLFHEAVGLTGITLTKLDGT----AKGGVIFSVADQFGIPIR---------YIGVG 474 (503)
T ss_dssp CSSEEEEEEEGGGT---HHHHHHHHHHHHHTCCSEEEEECGGGC----SCCTHHHHHHHHHCCCEE---------EEECS
T ss_pred CCCeeEEEecCccc---HHHHHHHHHHHhhcCCCEEEEEcCCCc----ccccHHHHHHHHHCCCEE---------EEecC
Confidence 36678888876642 245666777666666789999999987 778888888864344433 88874
Q ss_pred CCCCCCCCccccCChHHHHHHH
Q 007717 83 SGRVGTGHDSVYSSNEEFKQAI 104 (591)
Q Consensus 83 ~~R~g~~~D~v~~s~~~f~~ai 104 (591)
- ++ .|..--+.+.|.+++
T Consensus 475 e-~v---dDL~~f~~~~~v~~l 492 (503)
T 2yhs_A 475 E-RI---EDLRPFKADDFIEAL 492 (503)
T ss_dssp S-SG---GGEEECCHHHHHHHH
T ss_pred C-Ch---hhcccCCHHHHHHHH
Confidence 4 22 343334555555544
No 41
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=45.49 E-value=53 Score=28.76 Aligned_cols=56 Identities=16% Similarity=0.156 Sum_probs=32.5
Q ss_pred CCceEEEEeccCC-c-hhhh-hHHHHHHhcCCCCCceEEEeecccccccC-CCchhhHhhhcCC
Q 007717 3 HREFIILCLEDCS-D-WSNA-TTRRVVMQIDPELKRTIIVSTKLDTKIPQ-FARASDVEVFLSP 62 (591)
Q Consensus 3 ~~n~IILaV~~An-D-~ANS-daLklakeVDP~g~RTIgV~TKlD~ml~q-fd~gtDv~~~L~g 62 (591)
.-+++|+++..++ + +.+. .++...++..+ ...|.|.||.| . .+ -..-.++..++..
T Consensus 116 ~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~piilv~NK~D-~-~~~~~~~~~~~~~~~~ 175 (208)
T 3clv_A 116 GATCAIVVFDISNSNTLDRAKTWVNQLKISSN--YIIILVANKID-K-NKFQVDILEVQKYAQD 175 (208)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--CEEEEEEECTT-C-C-CCSCHHHHHHHHHH
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC--CcEEEEEECCC-c-ccccCCHHHHHHHHHH
Confidence 4567888887776 2 2221 24444444333 88999999999 3 22 1123455666643
No 42
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=44.78 E-value=25 Score=36.91 Aligned_cols=42 Identities=19% Similarity=0.221 Sum_probs=29.3
Q ss_pred CceEEEEeccCCchhhhhHHHHHHhcCCCCCceEEEeeccccc
Q 007717 4 REFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 4 ~n~IILaV~~AnD~ANSdaLklakeVDP~g~RTIgV~TKlD~m 46 (591)
.+++||++...+.+... .++++..+...+...|.|.||.|+.
T Consensus 258 ad~~llv~D~~~~~s~~-~~~~~~~~~~~~~~iiiv~NK~Dl~ 299 (436)
T 2hjg_A 258 SEVVAVVLDGEEGIIEQ-DKRIAGYAHEAGKAVVIVVNKWDAV 299 (436)
T ss_dssp CSEEEEEEETTTCCCHH-HHHHHHHHHHTTCEEEEEEECGGGS
T ss_pred CCEEEEEEcCCcCCcHH-HHHHHHHHHHcCCcEEEEEECccCC
Confidence 46778888766533322 2455555555788999999999998
No 43
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=44.19 E-value=23 Score=33.08 Aligned_cols=43 Identities=14% Similarity=0.152 Sum_probs=28.7
Q ss_pred CceEEEEeccCCc--hhhhhHHHHHHhcCCC--CCceEEEeeccccc
Q 007717 4 REFIILCLEDCSD--WSNATTRRVVMQIDPE--LKRTIIVSTKLDTK 46 (591)
Q Consensus 4 ~n~IILaV~~AnD--~ANSdaLklakeVDP~--g~RTIgV~TKlD~m 46 (591)
.+++|+++...+. +....++.+.+++... ....|+|.||.|+.
T Consensus 109 ~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~ 155 (228)
T 2qu8_A 109 NGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKC 155 (228)
T ss_dssp SEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGC
T ss_pred ccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccC
Confidence 3577777766552 2334455666666554 67799999999997
No 44
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=43.64 E-value=21 Score=31.21 Aligned_cols=43 Identities=23% Similarity=0.273 Sum_probs=31.8
Q ss_pred CCceEEEEeccCC-c-hhhh--hHHHHHHhcCCCCCceEEEeeccccc
Q 007717 3 HREFIILCLEDCS-D-WSNA--TTRRVVMQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 3 ~~n~IILaV~~An-D-~ANS--daLklakeVDP~g~RTIgV~TKlD~m 46 (591)
.-+++|+++...+ + +.+. .+++.+++..| +...|.|.||.|+.
T Consensus 79 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~ 125 (182)
T 3bwd_D 79 GADVFILAFSLISKASYENVSKKWIPELKHYAP-GVPIVLVGTKLDLR 125 (182)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEEECHHHH
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEechhhh
Confidence 4578888888766 2 3333 47777887766 67789999999997
No 45
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=43.01 E-value=40 Score=30.46 Aligned_cols=44 Identities=14% Similarity=0.144 Sum_probs=30.7
Q ss_pred CCceEEEEeccCC-c-hhh-hhHHHHHHhcCCCCCceEEEeeccccc
Q 007717 3 HREFIILCLEDCS-D-WSN-ATTRRVVMQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 3 ~~n~IILaV~~An-D-~AN-SdaLklakeVDP~g~RTIgV~TKlD~m 46 (591)
.-+.+|+++...+ + +.+ ..|+..+++.-+.....|+|.||.|+.
T Consensus 80 ~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 126 (206)
T 2bcg_Y 80 GSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLK 126 (206)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 4567888887766 2 222 125666666666678889999999997
No 46
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=42.98 E-value=27 Score=29.94 Aligned_cols=44 Identities=18% Similarity=0.085 Sum_probs=32.4
Q ss_pred CCceEEEEeccCC-ch-hh-hhHHHHHHhcCCCCCceEEEeeccccc
Q 007717 3 HREFIILCLEDCS-DW-SN-ATTRRVVMQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 3 ~~n~IILaV~~An-D~-AN-SdaLklakeVDP~g~RTIgV~TKlD~m 46 (591)
.-+++|+++...+ +- .+ ..+++..++..+....-|.|.||.|+.
T Consensus 78 ~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~ 124 (170)
T 1z0j_A 78 GSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLT 124 (170)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCG
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccc
Confidence 4578888888776 32 22 246677777777777888999999997
No 47
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=42.92 E-value=50 Score=29.21 Aligned_cols=44 Identities=14% Similarity=0.197 Sum_probs=28.1
Q ss_pred CCceEEEEeccCC-c-hhh-hhHHHHHHhc-CCCCCceEEEeeccccc
Q 007717 3 HREFIILCLEDCS-D-WSN-ATTRRVVMQI-DPELKRTIIVSTKLDTK 46 (591)
Q Consensus 3 ~~n~IILaV~~An-D-~AN-SdaLklakeV-DP~g~RTIgV~TKlD~m 46 (591)
.-+++|+++...+ + +.+ ..+++.+++. ...+...|.|.||.|+.
T Consensus 92 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~ 139 (190)
T 3con_A 92 TGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLP 139 (190)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCS
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCC
Confidence 4567777777665 2 111 2244445544 34678899999999987
No 48
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=41.80 E-value=90 Score=27.71 Aligned_cols=43 Identities=14% Similarity=0.142 Sum_probs=27.6
Q ss_pred CceEEEEeccCC-c-hhhh-hHHHHH-HhcCCCCCceEEEeeccccc
Q 007717 4 REFIILCLEDCS-D-WSNA-TTRRVV-MQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 4 ~n~IILaV~~An-D-~ANS-daLkla-keVDP~g~RTIgV~TKlD~m 46 (591)
.+++|+++...+ + +.+. .++... +..+..+...|+|.||.|+.
T Consensus 86 ~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 132 (206)
T 2bov_A 86 GEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 132 (206)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCG
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCcc
Confidence 357777776665 2 2221 233333 44455678899999999997
No 49
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=41.57 E-value=42 Score=34.48 Aligned_cols=41 Identities=12% Similarity=0.028 Sum_probs=30.0
Q ss_pred ceEEEEeccCCchhhhhHHHHHHhcCCCCCceEEEeeccccc
Q 007717 5 EFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 5 n~IILaV~~AnD~ANSdaLklakeVDP~g~RTIgV~TKlD~m 46 (591)
.++++.|+++.++-...-..+.+.++ .+...|.|+||.|+.
T Consensus 147 ~~~vy~I~~~~~~l~~~d~~~~~~l~-~~~piIlV~NK~Dl~ 187 (361)
T 2qag_A 147 HCCFYFISPFGHGLKPLDVAFMKAIH-NKVNIVPVIAKADTL 187 (361)
T ss_dssp CEEEEEECSSSSSCCHHHHHHHHHTC-S-SCEEEEEECCSSS
T ss_pred EEEEEEEecCCCCcchhHHHHHHHhc-cCCCEEEEEECCCCC
Confidence 47899999876433333346777776 567799999999998
No 50
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=41.43 E-value=19 Score=32.69 Aligned_cols=45 Identities=16% Similarity=0.181 Sum_probs=30.4
Q ss_pred CCCceEEEEeccCC-c-hhh-hhHHHHHHhcCCCCCceEEEeeccccc
Q 007717 2 QHREFIILCLEDCS-D-WSN-ATTRRVVMQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 2 ~~~n~IILaV~~An-D-~AN-SdaLklakeVDP~g~RTIgV~TKlD~m 46 (591)
..-+++|+++...+ + +.+ ..++..+++.-+.....|.|.||.|+.
T Consensus 104 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~ 151 (199)
T 3l0i_B 104 RGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 151 (199)
T ss_dssp CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCC
Confidence 34567888877665 2 112 347777788888888999999999986
No 51
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=41.18 E-value=1.2e+02 Score=32.58 Aligned_cols=43 Identities=19% Similarity=0.214 Sum_probs=31.4
Q ss_pred CCceEEEEeccCCchhhhhHHHHHHhcCCCCCceEEEeeccccc
Q 007717 3 HREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 3 ~~n~IILaV~~AnD~ANSdaLklakeVDP~g~RTIgV~TKlD~m 46 (591)
+.+.+|+++..++.-....++..+++..| ....|.|.||.|+.
T Consensus 121 ~~d~ii~V~D~s~~~~~~~~~~~l~~~~~-~~pvilV~NK~Dl~ 163 (535)
T 3dpu_A 121 RSSVYMLLLDSRTDSNKHYWLRHIEKYGG-KSPVIVVMNKIDEN 163 (535)
T ss_dssp SSEEEEEEECGGGGGGHHHHHHHHHHHSS-SCCEEEEECCTTTC
T ss_pred CCcEEEEEEeCCCchhHHHHHHHHHHhCC-CCCEEEEEECCCcc
Confidence 45677777766554344567888888776 46789999999986
No 52
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=40.27 E-value=23 Score=31.56 Aligned_cols=43 Identities=12% Similarity=0.125 Sum_probs=30.8
Q ss_pred CceEEEEeccCC--chhhhhHHHHHHhcCCCCCceEEEeeccccc
Q 007717 4 REFIILCLEDCS--DWSNATTRRVVMQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 4 ~n~IILaV~~An--D~ANSdaLklakeVDP~g~RTIgV~TKlD~m 46 (591)
-+.+|+++...+ ......++...++..+.+.-.|.|.||.|+.
T Consensus 84 ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 128 (172)
T 2gj8_A 84 ADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADIT 128 (172)
T ss_dssp CSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCC
Confidence 456777776654 2223456677777777778899999999996
No 53
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=39.67 E-value=27 Score=35.26 Aligned_cols=63 Identities=16% Similarity=0.210 Sum_probs=39.7
Q ss_pred CCCceEEEEeccCC-chhhhhHHHHHHhcCCCCCceEEEeecccccccCCCchhhHhhhcCCCcccCCccccCCCCceEe
Q 007717 2 QHREFIILCLEDCS-DWSNATTRRVVMQIDPELKRTIIVSTKLDTKIPQFARASDVEVFLSPPACTLDGFILGGSPFFTS 80 (591)
Q Consensus 2 ~~~n~IILaV~~An-D~ANSdaLklakeVDP~g~RTIgV~TKlD~ml~qfd~gtDv~~~L~g~~~~L~~~llG~~pFFvs 80 (591)
..|.-++|.+.+.+ .-.-....++.++. ..|+.|+||+|.- .+|..+..+..--+.|+. |+|
T Consensus 219 ~~P~~~lLvLDa~t~~~~~~~~~~~~~~~----~~t~iivTh~d~~----a~gg~~l~i~~~~~~pi~---------~ig 281 (304)
T 1rj9_A 219 EEPKEVWLVLDAVTGQNGLEQAKKFHEAV----GLTGVIVTKLDGT----AKGGVLIPIVRTLKVPIK---------FVG 281 (304)
T ss_dssp TCCSEEEEEEETTBCTHHHHHHHHHHHHH----CCSEEEEECTTSS----CCCTTHHHHHHHHCCCEE---------EEE
T ss_pred CCCCeEEEEEcHHHHHHHHHHHHHHHHHc----CCcEEEEECCccc----ccccHHHHHHHHHCCCeE---------EEe
Confidence 45777888887766 32223333444333 3599999999987 667777666554334433 877
Q ss_pred e
Q 007717 81 V 81 (591)
Q Consensus 81 v 81 (591)
+
T Consensus 282 ~ 282 (304)
T 1rj9_A 282 V 282 (304)
T ss_dssp C
T ss_pred C
Confidence 7
No 54
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=39.57 E-value=37 Score=30.73 Aligned_cols=44 Identities=23% Similarity=0.294 Sum_probs=31.9
Q ss_pred CCCceEEEEeccCC--chhhh--hHHHHHHhcCCCCCceEEEeeccccc
Q 007717 2 QHREFIILCLEDCS--DWSNA--TTRRVVMQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 2 ~~~n~IILaV~~An--D~ANS--daLklakeVDP~g~RTIgV~TKlD~m 46 (591)
+.-+++|+++...+ -+.+. .+++.+++.-| +...|.|.||.|+.
T Consensus 95 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~ 142 (201)
T 2gco_A 95 PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLR 142 (201)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEECGGGT
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEecHHhh
Confidence 35578888887666 33333 47777777655 56789999999998
No 55
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=39.46 E-value=2.4e+02 Score=30.29 Aligned_cols=40 Identities=23% Similarity=0.464 Sum_probs=25.2
Q ss_pred CceEEEEeccCCchhhhhHHHHHHhcCCCCCceEEEeeccccc
Q 007717 4 REFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 4 ~n~IILaV~~AnD~ANSdaLklakeVDP~g~RTIgV~TKlD~m 46 (591)
-+.+|+.+..++.+.- ...++...+ .+...|.|.||.|+.
T Consensus 324 aD~vl~VvD~s~~~s~-~~~~il~~l--~~~piivV~NK~DL~ 363 (482)
T 1xzp_A 324 ADIVLFVLDASSPLDE-EDRKILERI--KNKRYLVVINKVDVV 363 (482)
T ss_dssp CSEEEEEEETTSCCCH-HHHHHHHHH--TTSSEEEEEEECSSC
T ss_pred ccEEEEEecCCCCCCH-HHHHHHHHh--cCCCEEEEEECcccc
Confidence 3567777766552221 224444555 356789999999996
No 56
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=38.96 E-value=27 Score=37.38 Aligned_cols=39 Identities=10% Similarity=0.106 Sum_probs=33.8
Q ss_pred eEEEEeccCC-chhhhhHHHHHHhcCCCCCceEEEeeccccc
Q 007717 6 FIILCLEDCS-DWSNATTRRVVMQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 6 ~IILaV~~An-D~ANSdaLklakeVDP~g~RTIgV~TKlD~m 46 (591)
|+|++|.|++ .+...| ..+++.+. .+.+.|.|++|.|..
T Consensus 150 ~~v~fI~d~~~~l~~~D-ieilk~L~-~~~~vI~Vi~KtD~L 189 (427)
T 2qag_B 150 VCLYFIAPTGHSLKSLD-LVTMKKLD-SKVNIIPIIAKADAI 189 (427)
T ss_dssp EEEEEECCCC---CHHH-HHHHHHTC-SCSEEEEEESCGGGS
T ss_pred EEEEEEeCCCCCCCHHH-HHHHHHHh-hCCCEEEEEcchhcc
Confidence 5799999998 888888 89999998 889999999999998
No 57
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=38.66 E-value=36 Score=30.56 Aligned_cols=43 Identities=21% Similarity=0.322 Sum_probs=31.4
Q ss_pred CCceEEEEeccCC-c-hhhh--hHHHHHHhcCCCCCceEEEeeccccc
Q 007717 3 HREFIILCLEDCS-D-WSNA--TTRRVVMQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 3 ~~n~IILaV~~An-D-~ANS--daLklakeVDP~g~RTIgV~TKlD~m 46 (591)
.-+++|+++...+ + +.+. .|++.+++..| +...|.|.||.|+.
T Consensus 91 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~ 137 (201)
T 2q3h_A 91 NTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP-KAPIILVGTQSDLR 137 (201)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCS-SSCEEEEEECGGGG
T ss_pred CCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEECHhhh
Confidence 4567888888776 2 2332 46777777666 67889999999998
No 58
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=38.11 E-value=43 Score=29.16 Aligned_cols=58 Identities=10% Similarity=0.087 Sum_probs=33.3
Q ss_pred CceEEEEeccCC-c-hhhh-hHH-HHHHhcCCCCCceEEEeecccccccCCCchhhHhhhcC
Q 007717 4 REFIILCLEDCS-D-WSNA-TTR-RVVMQIDPELKRTIIVSTKLDTKIPQFARASDVEVFLS 61 (591)
Q Consensus 4 ~n~IILaV~~An-D-~ANS-daL-klakeVDP~g~RTIgV~TKlD~ml~qfd~gtDv~~~L~ 61 (591)
-+++|+++...+ + +.+. .++ .+.+.....+...|+|.||.|+.-..--.-.++..++.
T Consensus 90 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 151 (187)
T 2a9k_A 90 GEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAE 151 (187)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHH
Confidence 467788887665 2 1121 233 34444555678899999999997211112334555554
No 59
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=37.81 E-value=41 Score=28.48 Aligned_cols=43 Identities=16% Similarity=0.195 Sum_probs=29.2
Q ss_pred CceEEEEeccCC-c-hh--hhhHHHHHHhcCCCCCceEEEeeccccc
Q 007717 4 REFIILCLEDCS-D-WS--NATTRRVVMQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 4 ~n~IILaV~~An-D-~A--NSdaLklakeVDP~g~RTIgV~TKlD~m 46 (591)
-+++|+++...+ + +. ......+.+...+.+...|.|.||.|+.
T Consensus 75 ~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 121 (167)
T 1kao_A 75 GQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLE 121 (167)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGG
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCccc
Confidence 367888887766 2 11 1222345556677788899999999986
No 60
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=37.64 E-value=42 Score=29.93 Aligned_cols=44 Identities=11% Similarity=0.314 Sum_probs=32.5
Q ss_pred CCCceEEEEeccCC-c-hhhh--hHHHHHHhcCCCCCceEEEeeccccc
Q 007717 2 QHREFIILCLEDCS-D-WSNA--TTRRVVMQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 2 ~~~n~IILaV~~An-D-~ANS--daLklakeVDP~g~RTIgV~TKlD~m 46 (591)
+.-+++|+++...+ + +.+. .++..+++.-| ....|.|.||.|+.
T Consensus 88 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~ 135 (194)
T 2atx_A 88 PMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP-NVPFLLIGTQIDLR 135 (194)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEECTTST
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhc
Confidence 34578888888776 3 4443 47777777655 56789999999998
No 61
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=37.31 E-value=38 Score=34.05 Aligned_cols=57 Identities=14% Similarity=0.212 Sum_probs=39.4
Q ss_pred CceEEEEeccCCchhhhhHHHHHHhcCCCCCceEEEeecccccccCCCchhhHhhhcCCCcccC
Q 007717 4 REFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKLDTKIPQFARASDVEVFLSPPACTL 67 (591)
Q Consensus 4 ~n~IILaV~~AnD~ANSdaLklakeVDP~g~RTIgV~TKlD~ml~qfd~gtDv~~~L~g~~~~L 67 (591)
+..+||.+.+.. ..++.+.++...+...-+..|+||+|.. .++..+..++.-.+.|+
T Consensus 213 ~d~vllVvda~~---g~~~~~~~~~~~~~~~i~gvVlnk~D~~----~~~g~~~~~~~~~~~pi 269 (297)
T 1j8m_F 213 PDEVTLVIDASI---GQKAYDLASKFNQASKIGTIIITKMDGT----AKGGGALSAVAATGATI 269 (297)
T ss_dssp CSEEEEEEEGGG---GGGHHHHHHHHHHTCTTEEEEEECGGGC----TTHHHHHHHHHTTTCCE
T ss_pred CCEEEEEeeCCc---hHHHHHHHHHHHhhCCCCEEEEeCCCCC----cchHHHHHHHHHHCcCE
Confidence 456667666542 3567788888877655588999999998 77777776666544443
No 62
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=36.88 E-value=43 Score=29.68 Aligned_cols=45 Identities=13% Similarity=0.152 Sum_probs=30.3
Q ss_pred CCCceEEEEeccCC-c-hhhhh--HHHHHHhcCCCCCceEEEeeccccc
Q 007717 2 QHREFIILCLEDCS-D-WSNAT--TRRVVMQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 2 ~~~n~IILaV~~An-D-~ANSd--aLklakeVDP~g~RTIgV~TKlD~m 46 (591)
+.-+++|+++...+ + +.+.. ..++.+..+..+...|.|.||.|+.
T Consensus 88 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 136 (189)
T 2x77_A 88 SDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLP 136 (189)
T ss_dssp TTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTST
T ss_pred hcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCc
Confidence 35678888888776 2 33322 2334444556678899999999997
No 63
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=36.80 E-value=23 Score=30.70 Aligned_cols=44 Identities=9% Similarity=0.045 Sum_probs=30.1
Q ss_pred CCceEEEEeccCC-c-hhh-hhHHHHHHhcCCCCCceEEEeeccccc
Q 007717 3 HREFIILCLEDCS-D-WSN-ATTRRVVMQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 3 ~~n~IILaV~~An-D-~AN-SdaLklakeVDP~g~RTIgV~TKlD~m 46 (591)
.-+++|+++...+ + +.+ ..++..+++..+.....|.|.||.|+.
T Consensus 86 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 132 (179)
T 2y8e_A 86 DSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLS 132 (179)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGG
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccc
Confidence 3567888887766 2 222 235555665556677889999999997
No 64
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=35.87 E-value=39 Score=29.81 Aligned_cols=45 Identities=9% Similarity=0.173 Sum_probs=29.5
Q ss_pred CCCceEEEEeccCC-c-hhhhh-H-HHHHHhcCCCCCceEEEeeccccc
Q 007717 2 QHREFIILCLEDCS-D-WSNAT-T-RRVVMQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 2 ~~~n~IILaV~~An-D-~ANSd-a-LklakeVDP~g~RTIgV~TKlD~m 46 (591)
..-+++|+++...+ + +.+.. + .++.+.........|.|.||.|+.
T Consensus 84 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 132 (186)
T 1ksh_A 84 ESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLP 132 (186)
T ss_dssp TTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCC
Confidence 45678888887766 3 33321 2 333444445678899999999997
No 65
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=35.50 E-value=22 Score=33.50 Aligned_cols=55 Identities=9% Similarity=0.146 Sum_probs=27.1
Q ss_pred CCceEEEEeccCC-chhhhhHHHHHHhc-CC-CCCceEEEeecccccccCCCchhhHhhhcCC
Q 007717 3 HREFIILCLEDCS-DWSNATTRRVVMQI-DP-ELKRTIIVSTKLDTKIPQFARASDVEVFLSP 62 (591)
Q Consensus 3 ~~n~IILaV~~An-D~ANSdaLklakeV-DP-~g~RTIgV~TKlD~ml~qfd~gtDv~~~L~g 62 (591)
..+++|+.+.... +-....+++..++. .+ ....+|.|+||.|+. + ..++.+|+..
T Consensus 112 ~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~----~-~~~~~~~i~~ 169 (239)
T 3lxx_A 112 GPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTRKDDL----G-DTNLHDYLRE 169 (239)
T ss_dssp CCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC----------------
T ss_pred CCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeCCccC----C-cccHHHHHHh
Confidence 4577888776554 44444455544331 11 234699999999987 3 3455566543
No 66
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=35.20 E-value=68 Score=27.94 Aligned_cols=57 Identities=16% Similarity=0.192 Sum_probs=32.9
Q ss_pred CCceEEEEeccCCc--hhhh-hH-HHHHHhcCCCCCceEEEeecccccccCCCchhhHhhhcC
Q 007717 3 HREFIILCLEDCSD--WSNA-TT-RRVVMQIDPELKRTIIVSTKLDTKIPQFARASDVEVFLS 61 (591)
Q Consensus 3 ~~n~IILaV~~AnD--~ANS-da-LklakeVDP~g~RTIgV~TKlD~ml~qfd~gtDv~~~L~ 61 (591)
.-+++|+++..++. +.+. .+ ..+.+..+..+...|.|.||.|+. ++ ....++.+++.
T Consensus 85 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~-~~~~~i~~~~~ 145 (183)
T 1moz_A 85 DTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQP-GA-LSASEVSKELN 145 (183)
T ss_dssp TEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTST-TC-CCHHHHHHHTT
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCC-CC-CCHHHHHHHhC
Confidence 44677888776652 2221 12 223333346778899999999997 11 12455666664
No 67
>2rbd_A BH2358 protein; putative spore coat protein, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE PG4; 1.54A {Bacillus halodurans c-125}
Probab=34.96 E-value=1.3e+02 Score=27.55 Aligned_cols=54 Identities=11% Similarity=0.077 Sum_probs=39.4
Q ss_pred CCHHHHHHHhccCCCCCCCchhhHHHHHHHHHHHHhhcchHHHHHhhHHHHHHHHHHH
Q 007717 274 ITREEIVNACGVEDIHDGTNYSRTACVIAVAKARDTFEPFLHQLGCRLLHILKRLLPI 331 (591)
Q Consensus 274 ls~eeI~~Aig~~~~~~g~~~~~Afe~Iak~qir~l~~P~L~cv~~Rl~~V~~eL~~I 331 (591)
++|.+|+..+...-.++...+..|+..-++..+|+++.=++... ...+.+++.+
T Consensus 98 ~~D~~i~~~~l~~~k~~l~~~s~a~~es~r~Dir~~f~~~~~~~----~~~~~~i~~~ 151 (171)
T 2rbd_A 98 FNDPEISATISMDVAKGLVTCSQIIGQSIREDVALMFSQFHMAK----VQFGGKMLKL 151 (171)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHH----HHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 78999998875433444446899999999999999987666665 4466666664
No 68
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=34.45 E-value=50 Score=27.98 Aligned_cols=43 Identities=16% Similarity=0.182 Sum_probs=28.4
Q ss_pred CceEEEEeccCC-c-hhh-hhHHH-HHHhcCCCCCceEEEeeccccc
Q 007717 4 REFIILCLEDCS-D-WSN-ATTRR-VVMQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 4 ~n~IILaV~~An-D-~AN-SdaLk-lakeVDP~g~RTIgV~TKlD~m 46 (591)
-+++|+++...+ + +.+ ..++. +.+.....+...|.|.||.|+.
T Consensus 76 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 122 (168)
T 1u8z_A 76 GEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 122 (168)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGG
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECcccc
Confidence 467888887776 2 121 12333 4444555688999999999997
No 69
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=34.28 E-value=36 Score=35.98 Aligned_cols=42 Identities=19% Similarity=0.249 Sum_probs=25.3
Q ss_pred CceEEEEeccCCchhhhhHHHHHHhcCCCCCceEEEeeccccc
Q 007717 4 REFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 4 ~n~IILaV~~AnD~ANSdaLklakeVDP~g~RTIgV~TKlD~m 46 (591)
.+.||+.|. +.+--+..-..+++.+.-.+...|.|.||.|+.
T Consensus 103 ad~il~VvD-~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 103 ADVIIFMVN-GREGVTAADEEVAKILYRTKKPVVLAVNKLDNT 144 (456)
T ss_dssp CSEEEEEEE-SSSCSCHHHHHHHHHHTTCCSCEEEEEECC---
T ss_pred CCEEEEEEe-CCCCCChHHHHHHHHHHHcCCCEEEEEECccch
Confidence 345666655 442222333566676766888999999999987
No 70
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=34.04 E-value=46 Score=28.38 Aligned_cols=44 Identities=9% Similarity=0.062 Sum_probs=29.1
Q ss_pred CCceEEEEeccCC-c-hhhh-hHHHHHHhcCCCCCceEEEeeccccc
Q 007717 3 HREFIILCLEDCS-D-WSNA-TTRRVVMQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 3 ~~n~IILaV~~An-D-~ANS-daLklakeVDP~g~RTIgV~TKlD~m 46 (591)
.-+++|+++...+ + +.+. .++....+.-+.+...|.|.||.|+.
T Consensus 75 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 121 (170)
T 1ek0_A 75 NAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXL 121 (170)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred cCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcc
Confidence 4577888887776 2 2222 24444554445667789999999997
No 71
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=33.96 E-value=87 Score=27.08 Aligned_cols=45 Identities=20% Similarity=0.288 Sum_probs=36.2
Q ss_pred hHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccC
Q 007717 543 NLRHSLSQQKSDTEIEMKRIKKLKEKFKLIHEQFISHHVMSSLSL 587 (591)
Q Consensus 543 ~~r~~L~~~~~~l~~e~~~~~~~~~kF~~i~~~~~~~~~~~~~~~ 587 (591)
.++++|+.++..-..+.++++.++++-+.++.+|..+..++-.++
T Consensus 50 tL~~SL~kekaq~q~qq~~v~elqgEI~~Lnq~Lqda~~~~~~~~ 94 (99)
T 3ni0_A 50 TLQESLEKKVSQALEQQARIKELENEVTKLNQELENLRIQKETSS 94 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 456778777777777789999999999999999998886655443
No 72
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=33.32 E-value=46 Score=28.92 Aligned_cols=44 Identities=7% Similarity=-0.018 Sum_probs=29.8
Q ss_pred CCceEEEEeccCC-c-hhh-hhHHHHHHhcCCCCCceEEEeeccccc
Q 007717 3 HREFIILCLEDCS-D-WSN-ATTRRVVMQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 3 ~~n~IILaV~~An-D-~AN-SdaLklakeVDP~g~RTIgV~TKlD~m 46 (591)
.-+++|+++...+ + +.+ ..++..+++........|.|.||.|+.
T Consensus 84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 130 (181)
T 2efe_B 84 GAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLL 130 (181)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccc
Confidence 4567888887666 2 222 235555666555567789999999996
No 73
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=33.01 E-value=59 Score=28.08 Aligned_cols=45 Identities=18% Similarity=0.252 Sum_probs=28.5
Q ss_pred CCCceEEEEeccCC-ch-hh-hhHHHHHHh----cCCCCCceEEEeeccccc
Q 007717 2 QHREFIILCLEDCS-DW-SN-ATTRRVVMQ----IDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 2 ~~~n~IILaV~~An-D~-AN-SdaLklake----VDP~g~RTIgV~TKlD~m 46 (591)
+.-+++|+++...+ +- .+ ..++..... .++.+...|.|.||.|+.
T Consensus 80 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 131 (182)
T 1ky3_A 80 RGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAE 131 (182)
T ss_dssp TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSC
T ss_pred hcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccc
Confidence 34578888887776 32 11 123333332 245677899999999986
No 74
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=32.85 E-value=56 Score=28.90 Aligned_cols=44 Identities=11% Similarity=0.345 Sum_probs=31.3
Q ss_pred CCCceEEEEeccCC-c-hhh--hhHHHHHHhcCCCCCceEEEeeccccc
Q 007717 2 QHREFIILCLEDCS-D-WSN--ATTRRVVMQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 2 ~~~n~IILaV~~An-D-~AN--SdaLklakeVDP~g~RTIgV~TKlD~m 46 (591)
..-+++|+++...+ + +.+ ..|++..++.-| ....|.|.||.|+.
T Consensus 77 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~ 124 (184)
T 1m7b_A 77 PDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLR 124 (184)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-TCEEEEEEECGGGG
T ss_pred CCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEEEcchhh
Confidence 34578888888776 2 333 346666676655 56789999999998
No 75
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=32.74 E-value=54 Score=30.15 Aligned_cols=44 Identities=11% Similarity=0.324 Sum_probs=31.8
Q ss_pred CCCceEEEEeccCC--chhh--hhHHHHHHhcCCCCCceEEEeeccccc
Q 007717 2 QHREFIILCLEDCS--DWSN--ATTRRVVMQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 2 ~~~n~IILaV~~An--D~AN--SdaLklakeVDP~g~RTIgV~TKlD~m 46 (591)
..-+++||++...+ -+.+ ..|+..+++.-| ....|.|.||.|+.
T Consensus 98 ~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~ 145 (205)
T 1gwn_A 98 PDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLR 145 (205)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-TCEEEEEEECGGGG
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEEechhhc
Confidence 34578889888776 3344 356666776655 56789999999997
No 76
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=32.64 E-value=42 Score=29.88 Aligned_cols=57 Identities=14% Similarity=0.172 Sum_probs=34.1
Q ss_pred CCceEEEEeccCC-c-hhhh-hHH-HHHHhcCC--CCCceEEEeecccccccCCCchhhHhhhcC
Q 007717 3 HREFIILCLEDCS-D-WSNA-TTR-RVVMQIDP--ELKRTIIVSTKLDTKIPQFARASDVEVFLS 61 (591)
Q Consensus 3 ~~n~IILaV~~An-D-~ANS-daL-klakeVDP--~g~RTIgV~TKlD~ml~qfd~gtDv~~~L~ 61 (591)
.-+++|+++...+ + +.+. .++ .+.+.... .+...|.|.||.|+. .+. ...++..++.
T Consensus 90 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~-~~~~~~~~~~ 152 (190)
T 2h57_A 90 EGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLR-DAV-TSVKVSQLLC 152 (190)
T ss_dssp GCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTST-TCC-CHHHHHHHHT
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcc-cCC-CHHHHHHHhC
Confidence 3567888887766 3 3332 233 33333333 678899999999997 221 1345556653
No 77
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=32.64 E-value=44 Score=30.39 Aligned_cols=44 Identities=11% Similarity=0.029 Sum_probs=31.4
Q ss_pred CCceEEEEeccCC-c-hhh-hhHHHHHHhcCCCCCceEEEeeccccc
Q 007717 3 HREFIILCLEDCS-D-WSN-ATTRRVVMQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 3 ~~n~IILaV~~An-D-~AN-SdaLklakeVDP~g~RTIgV~TKlD~m 46 (591)
.-+++|+++...+ + +.+ ..++..+++.-+.....|.|.||.|+.
T Consensus 101 ~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 147 (201)
T 2hup_A 101 SANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLS 147 (201)
T ss_dssp TCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccc
Confidence 4578888888766 3 222 246666666666778889999999997
No 78
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=32.52 E-value=42 Score=35.71 Aligned_cols=52 Identities=17% Similarity=0.176 Sum_probs=34.2
Q ss_pred CCceEEEEeccCCchhhhhHHHHHHhcCCCC-CceEEEeecccccccCCCchhhHhhhcC
Q 007717 3 HREFIILCLEDCSDWSNATTRRVVMQIDPEL-KRTIIVSTKLDTKIPQFARASDVEVFLS 61 (591)
Q Consensus 3 ~~n~IILaV~~AnD~ANSdaLklakeVDP~g-~RTIgV~TKlD~ml~qfd~gtDv~~~L~ 61 (591)
.|..++|.|.+.... ++...++...+.. .-++.|+||+|.. .++..+..+..
T Consensus 210 ~~d~vllVvda~~g~---~~~~~~~~~~~~~~~i~gvVlnK~D~~----~~~g~~l~~~~ 262 (432)
T 2v3c_C 210 NPDEIILVIDGTIGQ---QAGIQAKAFKEAVGEIGSIIVTKLDGS----AKGGGALSAVA 262 (432)
T ss_dssp CCSEEEEEEEGGGGG---GHHHHHHHHHTTSCSCEEEEEECSSSC----STTHHHHHHHH
T ss_pred cCcceeEEeeccccH---HHHHHHHHHhhcccCCeEEEEeCCCCc----cchHHHHHHHH
Confidence 456666666543332 5667778877765 4499999999998 66555555444
No 79
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=32.48 E-value=28 Score=30.65 Aligned_cols=40 Identities=18% Similarity=0.100 Sum_probs=22.5
Q ss_pred eEEEEeccCCchhhhhHHHHHHhcCCCCCceEEEeeccccc
Q 007717 6 FIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 6 ~IILaV~~AnD~ANSdaLklakeVDP~g~RTIgV~TKlD~m 46 (591)
.+|+++...+.+..++ ..+.+.+...+...|+|.||.|+.
T Consensus 107 ~vi~v~d~~~~~~~~~-~~~~~~~~~~~~p~i~v~nK~Dl~ 146 (195)
T 3pqc_A 107 MVFLLVDGRIPPQDSD-LMMVEWMKSLNIPFTIVLTKMDKV 146 (195)
T ss_dssp EEEEEEETTSCCCHHH-HHHHHHHHHTTCCEEEEEECGGGS
T ss_pred EEEEEecCCCCCCHHH-HHHHHHHHHcCCCEEEEEEChhcC
Confidence 4444444333333322 233333333367899999999997
No 80
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=32.42 E-value=73 Score=27.25 Aligned_cols=45 Identities=11% Similarity=0.248 Sum_probs=29.6
Q ss_pred CCCceEEEEeccCC-c-hhhhh--HHHHHHhcCCCCCceEEEeeccccc
Q 007717 2 QHREFIILCLEDCS-D-WSNAT--TRRVVMQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 2 ~~~n~IILaV~~An-D-~ANSd--aLklakeVDP~g~RTIgV~TKlD~m 46 (591)
+.-+++|+++...+ + +.+.. ...+.+...+.+...|.|.||.|+.
T Consensus 73 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 121 (171)
T 1upt_A 73 SNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDME 121 (171)
T ss_dssp TTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCc
Confidence 35578888887766 2 33222 2334444445678899999999997
No 81
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=32.42 E-value=50 Score=30.47 Aligned_cols=44 Identities=7% Similarity=-0.077 Sum_probs=28.9
Q ss_pred CCceEEEEeccCC-ch-hh-hhHHHHHHhcCCCCCceEEEeeccccc
Q 007717 3 HREFIILCLEDCS-DW-SN-ATTRRVVMQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 3 ~~n~IILaV~~An-D~-AN-SdaLklakeVDP~g~RTIgV~TKlD~m 46 (591)
.-+++|+++...+ +- .+ ..|+..+++..+.+.-.|+|.||.|+.
T Consensus 85 ~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~ 131 (223)
T 3cpj_B 85 GAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLA 131 (223)
T ss_dssp TCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGG
T ss_pred cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 4567888887666 32 22 235666777767777889999999997
No 82
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=32.41 E-value=22 Score=38.08 Aligned_cols=63 Identities=13% Similarity=0.203 Sum_probs=42.3
Q ss_pred CCceEEEEeccCCchhhhhHHHHHHhcCCCCCceEEEeecccccccCCCchhhHhhhcCCCcccCCccccCCCCceEee
Q 007717 3 HREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKLDTKIPQFARASDVEVFLSPPACTLDGFILGGSPFFTSV 81 (591)
Q Consensus 3 ~~n~IILaV~~AnD~ANSdaLklakeVDP~g~RTIgV~TKlD~ml~qfd~gtDv~~~L~g~~~~L~~~llG~~pFFvsv 81 (591)
+|..++|.|.+.. ..++..+|+..++...=|..|+||+|.- +++..+..+..-.+.|+. |+|+
T Consensus 211 ~pd~vlLVlDa~~---gq~a~~~a~~f~~~~~~~gVIlTKlD~~----a~~G~als~~~~~g~Pi~---------fig~ 273 (433)
T 3kl4_A 211 KPDDVILVIDASI---GQKAYDLASRFHQASPIGSVIITKMDGT----AKGGGALSAVVATGATIK---------FIGT 273 (433)
T ss_dssp CCSEEEEEEEGGG---GGGGHHHHHHHHHHCSSEEEEEECGGGC----SCHHHHHHHHHHHTCEEE---------EEEC
T ss_pred CCcceEEEEeCcc---chHHHHHHHHHhcccCCcEEEEeccccc----ccchHHHHHHHHHCCCEE---------EEEC
Confidence 3567777777765 1245556666666656688999999998 777766666553344433 8887
No 83
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=32.08 E-value=58 Score=30.03 Aligned_cols=44 Identities=16% Similarity=0.383 Sum_probs=33.2
Q ss_pred CCCceEEEEeccCC--chhh--hhHHHHHHhcCCCCCceEEEeeccccc
Q 007717 2 QHREFIILCLEDCS--DWSN--ATTRRVVMQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 2 ~~~n~IILaV~~An--D~AN--SdaLklakeVDP~g~RTIgV~TKlD~m 46 (591)
..-+++||++...+ -+.+ ..|++.+++..| ..-.|+|.||.|+.
T Consensus 97 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~ 144 (214)
T 3q3j_B 97 SDSDAVLLCFDISRPETVDSALKKWRTEILDYCP-STRVLLIGCKTDLR 144 (214)
T ss_dssp TTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCT-TSEEEEEEECGGGG
T ss_pred CCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhc
Confidence 34578899998777 2333 468888888765 56789999999998
No 84
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=32.02 E-value=24 Score=35.78 Aligned_cols=64 Identities=16% Similarity=0.130 Sum_probs=43.3
Q ss_pred CceEEEEeccCCchhhhhHHHHHHhcCCCCCceEEEeecccccccCCCchhhHhhhcCCCcccCCccccCCCCceEeecC
Q 007717 4 REFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKLDTKIPQFARASDVEVFLSPPACTLDGFILGGSPFFTSVPS 83 (591)
Q Consensus 4 ~n~IILaV~~AnD~ANSdaLklakeVDP~g~RTIgV~TKlD~ml~qfd~gtDv~~~L~g~~~~L~~~llG~~pFFvsvp~ 83 (591)
|..++|.|.... ..++++.+++......-|-.|+||+|-. .+|-.+..++.--+.|+. |+++--
T Consensus 223 p~~vllVlda~t---~~~~l~~a~~~~~~~~i~gvVlTk~D~~----~~gG~~l~~~~~~~~Pi~---------~i~~Ge 286 (306)
T 1vma_A 223 PHETLLVIDATT---GQNGLVQAKIFKEAVNVTGIILTKLDGT----AKGGITLAIARELGIPIK---------FIGVGE 286 (306)
T ss_dssp CSEEEEEEEGGG---HHHHHHHHHHHHHHSCCCEEEEECGGGC----SCTTHHHHHHHHHCCCEE---------EEECSS
T ss_pred CcEEEEEEECCC---CHHHHHHHHHHHhcCCCCEEEEeCCCCc----cchHHHHHHHHHHCCCEE---------EEeCCC
Confidence 566777775442 2345566666555555677899999998 888888877776556555 888833
No 85
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=32.00 E-value=49 Score=29.34 Aligned_cols=57 Identities=19% Similarity=0.353 Sum_probs=34.4
Q ss_pred CCceEEEEeccCC-c-hhhhh-H-HHHHHhcCCCCCceEEEeecccccccCCCchhhHhhhcC
Q 007717 3 HREFIILCLEDCS-D-WSNAT-T-RRVVMQIDPELKRTIIVSTKLDTKIPQFARASDVEVFLS 61 (591)
Q Consensus 3 ~~n~IILaV~~An-D-~ANSd-a-LklakeVDP~g~RTIgV~TKlD~ml~qfd~gtDv~~~L~ 61 (591)
.-+++|+++...+ + +.+.. + ..+.+...+.+...|.|.||.|+. .+. ...++..++.
T Consensus 83 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~-~~~-~~~~i~~~~~ 143 (187)
T 1zj6_A 83 NTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVK-ECM-TVAEISQFLK 143 (187)
T ss_dssp TCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTST-TCC-CHHHHHHHHT
T ss_pred CCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCc-CCC-CHHHHHHHhC
Confidence 4578888888776 3 33322 2 233333345678899999999997 211 1345555553
No 86
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=31.82 E-value=53 Score=32.75 Aligned_cols=42 Identities=21% Similarity=0.411 Sum_probs=26.2
Q ss_pred CceEEEEeccCCchhhhhHHHH-HHhcCCCCCceEEEeeccccc
Q 007717 4 REFIILCLEDCSDWSNATTRRV-VMQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 4 ~n~IILaV~~AnD~ANSdaLkl-akeVDP~g~RTIgV~TKlD~m 46 (591)
.+++|+++..++.+...+ +.+ ...+.......|.|+||.|+.
T Consensus 93 aD~il~VvD~~~~~~~~~-~~~~~~~l~~~~~pvilV~NK~Dl~ 135 (308)
T 3iev_A 93 ADVILFMIDATEGWRPRD-EEIYQNFIKPLNKPVIVVINKIDKI 135 (308)
T ss_dssp CSEEEEEEETTTBSCHHH-HHHHHHHTGGGCCCEEEEEECGGGS
T ss_pred CCEEEEEEeCCCCCCchh-HHHHHHHHHhcCCCEEEEEECccCC
Confidence 457777777665333222 222 333333567799999999997
No 87
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=31.36 E-value=4.2e+02 Score=28.14 Aligned_cols=41 Identities=17% Similarity=0.503 Sum_probs=25.9
Q ss_pred CCceEEEEeccCCchhhhhHHHHHHhcCCCCCceEEEeeccccc
Q 007717 3 HREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 3 ~~n~IILaV~~AnD~ANSdaLklakeVDP~g~RTIgV~TKlD~m 46 (591)
.-+.+|+.+..++.+...+ ..+.+.+.. ...|.|.||.|+.
T Consensus 303 ~aD~vl~VvD~s~~~~~~~-~~i~~~l~~--~piivV~NK~Dl~ 343 (462)
T 3geh_A 303 TADLVLLTIDAATGWTTGD-QEIYEQVKH--RPLILVMNKIDLV 343 (462)
T ss_dssp SCSEEEEEEETTTCSCHHH-HHHHHHHTT--SCEEEEEECTTSS
T ss_pred cCCEEEEEeccCCCCCHHH-HHHHHhccC--CcEEEEEECCCCC
Confidence 4466777777665443332 344444432 5789999999997
No 88
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=31.23 E-value=31 Score=30.70 Aligned_cols=41 Identities=15% Similarity=0.042 Sum_probs=25.4
Q ss_pred ceEEEEeccCCchhhhhHHHHHHhcCCCCCceEEEeeccccc
Q 007717 5 EFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 5 n~IILaV~~AnD~ANSdaLklakeVDP~g~RTIgV~TKlD~m 46 (591)
+++|+++...+.+... .+.+.+.+...+...|.|.||.|+.
T Consensus 107 ~~~i~v~d~~~~~~~~-~~~~~~~~~~~~~p~i~v~nK~Dl~ 147 (195)
T 1svi_A 107 KAVVQIVDLRHAPSND-DVQMYEFLKYYGIPVIVIATKADKI 147 (195)
T ss_dssp EEEEEEEETTSCCCHH-HHHHHHHHHHTTCCEEEEEECGGGS
T ss_pred CEEEEEEECCCCCCHH-HHHHHHHHHHcCCCEEEEEECcccC
Confidence 4666666655433222 2333444443667899999999998
No 89
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=31.18 E-value=59 Score=29.50 Aligned_cols=44 Identities=25% Similarity=0.324 Sum_probs=31.1
Q ss_pred CCCceEEEEeccCC-c-hhhh--hHHHHHHhcCCCCCceEEEeeccccc
Q 007717 2 QHREFIILCLEDCS-D-WSNA--TTRRVVMQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 2 ~~~n~IILaV~~An-D-~ANS--daLklakeVDP~g~RTIgV~TKlD~m 46 (591)
..-+++|+++...+ + +.+. .+++.+++.-| +...|.|.||.|+.
T Consensus 95 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~ 142 (207)
T 2fv8_A 95 PDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCP-NVPIILVANKKDLR 142 (207)
T ss_dssp TTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEECGGGG
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEchhhh
Confidence 34578888887766 3 3333 46777776544 56789999999997
No 90
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=30.88 E-value=36 Score=31.10 Aligned_cols=40 Identities=23% Similarity=0.206 Sum_probs=23.8
Q ss_pred eEEEEeccCCchhhhhHHHHHHhcCCCCCceEEEeeccccc
Q 007717 6 FIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 6 ~IILaV~~AnD~ANSdaLklakeVDP~g~RTIgV~TKlD~m 46 (591)
.||+.+...+.+... ...+.+.+.-.+...|+|+||.|+.
T Consensus 118 ~vi~v~d~~~~~~~~-~~~~~~~l~~~~~p~i~v~nK~Dl~ 157 (223)
T 4dhe_A 118 GMILMMDARRPLTEL-DRRMIEWFAPTGKPIHSLLTKCDKL 157 (223)
T ss_dssp EEEEEEETTSCCCHH-HHHHHHHHGGGCCCEEEEEECGGGS
T ss_pred EEEEEEeCCCCCCHH-HHHHHHHHHhcCCCEEEEEeccccC
Confidence 355555544333322 2333333333667899999999998
No 91
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=30.69 E-value=42 Score=30.41 Aligned_cols=43 Identities=21% Similarity=0.302 Sum_probs=32.0
Q ss_pred CCceEEEEeccCC-c-hhhh--hHHHHHHhcCCCCCceEEEeeccccc
Q 007717 3 HREFIILCLEDCS-D-WSNA--TTRRVVMQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 3 ~~n~IILaV~~An-D-~ANS--daLklakeVDP~g~RTIgV~TKlD~m 46 (591)
.-+.+|+++...+ + +.+. .|++.+++..| ....|.|.||.|+.
T Consensus 80 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~ 126 (212)
T 2j0v_A 80 GADIFVLAFSLISKASYENVLKKWMPELRRFAP-NVPIVLVGTKLDLR 126 (212)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEEECHHHH
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEeCHHhh
Confidence 4578888887766 2 3332 57778887766 67789999999997
No 92
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=30.58 E-value=42 Score=29.99 Aligned_cols=45 Identities=7% Similarity=0.116 Sum_probs=28.6
Q ss_pred CCCceEEEEeccCC-c-hhhh-hH-HHHHHhcCCCCCceEEEeeccccc
Q 007717 2 QHREFIILCLEDCS-D-WSNA-TT-RRVVMQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 2 ~~~n~IILaV~~An-D-~ANS-da-LklakeVDP~g~RTIgV~TKlD~m 46 (591)
..-+++|+++...+ + +.+. .+ ..+.+.....+...|.|.||.|+.
T Consensus 89 ~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 137 (188)
T 1zd9_A 89 RGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLP 137 (188)
T ss_dssp TTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTST
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCc
Confidence 34578888887665 2 2221 12 233444445677899999999997
No 93
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=30.58 E-value=48 Score=29.27 Aligned_cols=57 Identities=19% Similarity=0.345 Sum_probs=33.7
Q ss_pred CCCceEEEEeccCC-c-hhhhh--HHHHHHhcCCCCCceEEEeecccccccCCCchhhHhhhc
Q 007717 2 QHREFIILCLEDCS-D-WSNAT--TRRVVMQIDPELKRTIIVSTKLDTKIPQFARASDVEVFL 60 (591)
Q Consensus 2 ~~~n~IILaV~~An-D-~ANSd--aLklakeVDP~g~RTIgV~TKlD~ml~qfd~gtDv~~~L 60 (591)
..-+++|+++...+ + +.+.. ..++.+.....+...|.|.||.|+. .+. ...++..++
T Consensus 87 ~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~-~~~-~~~~i~~~~ 147 (181)
T 2h17_A 87 TNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVK-ECM-TVAEISQFL 147 (181)
T ss_dssp TTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST-TCC-CHHHHHHHT
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcc-cCC-CHHHHHHHh
Confidence 34577888887766 2 33221 2333333345778899999999997 111 234555555
No 94
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=30.50 E-value=58 Score=28.82 Aligned_cols=45 Identities=7% Similarity=0.146 Sum_probs=28.6
Q ss_pred CCCceEEEEeccCC-c-hhhh-hHHHHHHhc--------CCCCCceEEEeeccccc
Q 007717 2 QHREFIILCLEDCS-D-WSNA-TTRRVVMQI--------DPELKRTIIVSTKLDTK 46 (591)
Q Consensus 2 ~~~n~IILaV~~An-D-~ANS-daLklakeV--------DP~g~RTIgV~TKlD~m 46 (591)
..-+++|+++...+ + +.+. .++.-..+. ++.....|+|.||.|+.
T Consensus 85 ~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 140 (199)
T 4bas_A 85 DNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAA 140 (199)
T ss_dssp TTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTST
T ss_pred hcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCC
Confidence 45678888888777 3 3333 233322221 12367799999999997
No 95
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=29.84 E-value=68 Score=28.55 Aligned_cols=44 Identities=16% Similarity=0.352 Sum_probs=31.4
Q ss_pred CCCceEEEEeccCC--chhh--hhHHHHHHhcCCCCCceEEEeeccccc
Q 007717 2 QHREFIILCLEDCS--DWSN--ATTRRVVMQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 2 ~~~n~IILaV~~An--D~AN--SdaLklakeVDP~g~RTIgV~TKlD~m 46 (591)
..-+++|+++...+ -+.+ ..+++.+++.-| ....|.|.||.|+.
T Consensus 93 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~ 140 (194)
T 3reg_A 93 ADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYID-TAKTVLVGLKVDLR 140 (194)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-TSEEEEEEECGGGC
T ss_pred cCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhc
Confidence 34578888888776 3333 457777776643 46789999999997
No 96
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=29.66 E-value=1.5e+02 Score=26.04 Aligned_cols=21 Identities=29% Similarity=0.365 Sum_probs=9.5
Q ss_pred HHHHHhhhhhHHHHHHHHHHH
Q 007717 545 RHSLSQQKSDTEIEMKRIKKL 565 (591)
Q Consensus 545 r~~L~~~~~~l~~e~~~~~~~ 565 (591)
|..|+.+...|..|+.=++++
T Consensus 85 r~dLE~~iesL~eEl~FLKk~ 105 (119)
T 3ol1_A 85 RLDLERKVESLQEEIAFLKKL 105 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444443
No 97
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=28.73 E-value=47 Score=32.33 Aligned_cols=42 Identities=14% Similarity=0.169 Sum_probs=31.1
Q ss_pred CCCceEEEEeccCCchhhhhHHHHHHhcCCCCCceEEEeeccccc
Q 007717 2 QHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 2 ~~~n~IILaV~~AnD~ANSdaLklakeVDP~g~RTIgV~TKlD~m 46 (591)
.+.+++|+++..++ . ...+.+..++-..+...|.|+||.|+.
T Consensus 82 ~~~d~vi~VvDas~-~--~~~~~l~~~l~~~~~pvilv~NK~Dl~ 123 (256)
T 3iby_A 82 LEYDCIINVIDACH-L--ERHLYLTSQLFELGKPVVVALNMMDIA 123 (256)
T ss_dssp SCCSEEEEEEEGGG-H--HHHHHHHHHHTTSCSCEEEEEECHHHH
T ss_pred CCCCEEEEEeeCCC-c--hhHHHHHHHHHHcCCCEEEEEEChhcC
Confidence 45778888887776 1 223456666666688999999999987
No 98
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=28.29 E-value=53 Score=34.40 Aligned_cols=69 Identities=22% Similarity=0.292 Sum_probs=38.1
Q ss_pred CceEEEEeccCCchhhhhHHHHHHhcCCCCCceEEEeecccccccCCCchhhHhhhcCCCcccCCccccCCCCceEeecC
Q 007717 4 REFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKLDTKIPQFARASDVEVFLSPPACTLDGFILGGSPFFTSVPS 83 (591)
Q Consensus 4 ~n~IILaV~~AnD~ANSdaLklakeVDP~g~RTIgV~TKlD~ml~qfd~gtDv~~~L~g~~~~L~~~llG~~pFFvsvp~ 83 (591)
-+.||++|...+-+...+ ..+++.+...+.-.|.|.||.|+. ....++.+|.+ +. +| .+|.+|--.
T Consensus 83 ad~il~vvD~~~~~~~~d-~~~~~~l~~~~~pvilv~NK~D~~----~~~~~~~~~~~-----lg---~~-~~~~iSA~~ 148 (436)
T 2hjg_A 83 ADVIIFMVNGREGVTAAD-EEVAKILYRTKKPVVLAVNKLDNT----EMRANIYDFYS-----LG---FG-EPYPISGTH 148 (436)
T ss_dssp CSEEEEEEETTTCSCHHH-HHHHHHHTTCCSCEEEEEECCCC---------CCCSSGG-----GS---SC-CCEECBTTT
T ss_pred CCEEEEEEeCCCCCCHHH-HHHHHHHHHcCCCEEEEEECccCc----cchhhHHHHHH-----cC---CC-CeEEEeCcC
Confidence 356677776554333333 456666666788899999999997 43333333331 11 22 577777755
Q ss_pred CCC
Q 007717 84 GRV 86 (591)
Q Consensus 84 ~R~ 86 (591)
|++
T Consensus 149 g~g 151 (436)
T 2hjg_A 149 GLG 151 (436)
T ss_dssp TBT
T ss_pred CCC
Confidence 444
No 99
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=28.07 E-value=94 Score=32.71 Aligned_cols=41 Identities=20% Similarity=0.228 Sum_probs=27.7
Q ss_pred ceEEEEeccCCchhhhhHHHHHHhcCCCCCceEEEeeccccc
Q 007717 5 EFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 5 n~IILaV~~AnD~ANSdaLklakeVDP~g~RTIgV~TKlD~m 46 (591)
+++||++...+.+... ..+++..+.-.+.-.|.|.||.|+.
T Consensus 279 d~~llviD~~~~~~~~-~~~~~~~~~~~~~~~ilv~NK~Dl~ 319 (456)
T 4dcu_A 279 EVVAVVLDGEEGIIEQ-DKRIAGYAHEAGKAVVIVVNKWDAV 319 (456)
T ss_dssp SEEEEEEETTTCCCHH-HHHHHHHHHHTTCEEEEEEECGGGS
T ss_pred CEEEEEEeCCCCcCHH-HHHHHHHHHHcCCCEEEEEEChhcC
Confidence 5677776655444333 3455555555788899999999997
No 100
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=28.04 E-value=80 Score=26.83 Aligned_cols=45 Identities=11% Similarity=0.139 Sum_probs=28.8
Q ss_pred CCCceEEEEeccCC-c-hhhhh-HHH-HHHhcCCCCCceEEEeeccccc
Q 007717 2 QHREFIILCLEDCS-D-WSNAT-TRR-VVMQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 2 ~~~n~IILaV~~An-D-~ANSd-aLk-lakeVDP~g~RTIgV~TKlD~m 46 (591)
..-+++|+++...+ + +.+.. ++. +.+.........|.|.||.|+.
T Consensus 66 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 114 (164)
T 1r8s_A 66 QNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLP 114 (164)
T ss_dssp TTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCc
Confidence 45678888887766 2 33322 222 2233344567899999999996
No 101
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=27.90 E-value=58 Score=27.40 Aligned_cols=43 Identities=16% Similarity=0.157 Sum_probs=27.9
Q ss_pred CceEEEEeccCCchh--h-hhHHHHHHhc-CCCCCceEEEeeccccc
Q 007717 4 REFIILCLEDCSDWS--N-ATTRRVVMQI-DPELKRTIIVSTKLDTK 46 (591)
Q Consensus 4 ~n~IILaV~~AnD~A--N-SdaLklakeV-DP~g~RTIgV~TKlD~m 46 (591)
-+++|+++...+... + ..+++.+++. +..+...|.|.||.|+.
T Consensus 75 ~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~ 121 (166)
T 2ce2_X 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLA 121 (166)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCS
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhh
Confidence 467888887665221 1 2344444443 44578899999999987
No 102
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=27.68 E-value=50 Score=35.05 Aligned_cols=39 Identities=10% Similarity=0.067 Sum_probs=28.8
Q ss_pred eEEEEeccCC-chhhhhHHHHHHhcCCCCCceEEEeeccccc
Q 007717 6 FIILCLEDCS-DWSNATTRRVVMQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 6 ~IILaV~~An-D~ANSdaLklakeVDP~g~RTIgV~TKlD~m 46 (591)
+|++.++|.+ -+...+ ..+.+++.+ +.-.|.|+||.|+.
T Consensus 141 vlL~ldePt~~~L~~~d-~~~lk~L~~-~v~iIlVinK~Dll 180 (418)
T 2qag_C 141 CCLYFIAPSGHGLKPLD-IEFMKRLHE-KVNIIPLIAKADTL 180 (418)
T ss_dssp EEEEECCC-CCSCCHHH-HHHHHHHTT-TSEEEEEEESTTSS
T ss_pred EEEEEecCcccCCCHHH-HHHHHHHhc-cCcEEEEEEcccCc
Confidence 5899999963 444444 466677765 78899999999998
No 103
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=27.57 E-value=47 Score=32.14 Aligned_cols=43 Identities=7% Similarity=0.006 Sum_probs=26.5
Q ss_pred CceEEEEeccCC-chhh--hhHHHHHHhcCCCC--CceEEEeeccccc
Q 007717 4 REFIILCLEDCS-DWSN--ATTRRVVMQIDPEL--KRTIIVSTKLDTK 46 (591)
Q Consensus 4 ~n~IILaV~~An-D~AN--SdaLklakeVDP~g--~RTIgV~TKlD~m 46 (591)
.+++|+++.... .+.. ..+++..++.-+.. ...|.|+||.|+.
T Consensus 120 ~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~ 167 (270)
T 1h65_A 120 IDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFS 167 (270)
T ss_dssp ECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCC
T ss_pred CCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccC
Confidence 567888854432 3332 34555555542222 5899999999986
No 104
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=27.50 E-value=75 Score=27.30 Aligned_cols=44 Identities=14% Similarity=0.161 Sum_probs=26.3
Q ss_pred CCceEEEEeccCC--chhhh-hHHHHHHhc-CCCCCceEEEeeccccc
Q 007717 3 HREFIILCLEDCS--DWSNA-TTRRVVMQI-DPELKRTIIVSTKLDTK 46 (591)
Q Consensus 3 ~~n~IILaV~~An--D~ANS-daLklakeV-DP~g~RTIgV~TKlD~m 46 (591)
..+++|+++...+ -+.+. .++...++. .+.+.-.|.|.||.|+.
T Consensus 77 ~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~ 124 (175)
T 2nzj_A 77 GGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLA 124 (175)
T ss_dssp SCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCT
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhc
Confidence 4577888887665 22222 244444443 55677889999999997
No 105
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=27.10 E-value=1e+02 Score=26.62 Aligned_cols=37 Identities=14% Similarity=0.217 Sum_probs=21.0
Q ss_pred hHHHHHHhhhhhHHHHHHHH-------HHHHHHHHHHHHHHHhh
Q 007717 543 NLRHSLSQQKSDTEIEMKRI-------KKLKEKFKLIHEQFISH 579 (591)
Q Consensus 543 ~~r~~L~~~~~~l~~e~~~~-------~~~~~kF~~i~~~~~~~ 579 (591)
.+...|+.+...|+.|+..+ +.+++|+..|...|..-
T Consensus 47 ~t~~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L~~eLe~F 90 (96)
T 1t3j_A 47 MTQKHLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQLESELENF 90 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 44555555555555555544 55666666666666543
No 106
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=26.80 E-value=85 Score=26.63 Aligned_cols=44 Identities=9% Similarity=0.054 Sum_probs=27.6
Q ss_pred CCceEEEEeccCC-c-hhhh-hHHHHHHhcCCCCCceEEEeeccccc
Q 007717 3 HREFIILCLEDCS-D-WSNA-TTRRVVMQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 3 ~~n~IILaV~~An-D-~ANS-daLklakeVDP~g~RTIgV~TKlD~m 46 (591)
.-+++|+++...+ + +.+. .++..+++.-+...-.|.|.||.|+.
T Consensus 78 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~ 124 (170)
T 1r2q_A 78 GAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLA 124 (170)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCc
Confidence 4577888887776 2 2222 24444444434455677888999996
No 107
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=26.75 E-value=77 Score=27.59 Aligned_cols=44 Identities=14% Similarity=0.107 Sum_probs=25.8
Q ss_pred CCceEEEEeccCC-c-hhhh-hHH-HHHHhcCCCCCceEEEeeccccc
Q 007717 3 HREFIILCLEDCS-D-WSNA-TTR-RVVMQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 3 ~~n~IILaV~~An-D-~ANS-daL-klakeVDP~g~RTIgV~TKlD~m 46 (591)
.-+++|+++...+ + +.+. .++ .+.+.......-.|.|.||.|+.
T Consensus 77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 124 (181)
T 3t5g_A 77 DINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 124 (181)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCT
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccch
Confidence 4567888887665 2 1111 122 44555666677899999999985
No 108
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=26.75 E-value=59 Score=30.91 Aligned_cols=45 Identities=20% Similarity=0.175 Sum_probs=28.6
Q ss_pred CCCceEEEEeccCC-chhhhhHHHHHHhcCCC--CCceEEEee-ccccc
Q 007717 2 QHREFIILCLEDCS-DWSNATTRRVVMQIDPE--LKRTIIVST-KLDTK 46 (591)
Q Consensus 2 ~~~n~IILaV~~An-D~ANSdaLklakeVDP~--g~RTIgV~T-KlD~m 46 (591)
...+++|+++...+ .-.....++.++++-+. ...+|.|+| |.|+.
T Consensus 104 ~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~ 152 (260)
T 2xtp_A 104 PGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLN 152 (260)
T ss_dssp TCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGT
T ss_pred CCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccC
Confidence 34678888887765 32223344555554222 456888998 99998
No 109
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=26.70 E-value=2.5e+02 Score=30.90 Aligned_cols=68 Identities=16% Similarity=0.171 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHhhcccChH--HHHHHHHHHHHHHHHHHhHhhcccc
Q 007717 138 SFLEELLQKRYMDSVPMIIPLLEKEYCSTTRKLNEINKELSTLDEV--KLKEKGRVFHDLFLTKLSLLLKGTV 208 (591)
Q Consensus 138 ~~Ln~~L~~hyr~~lP~i~~~L~~~~~~~~~eL~~~~~el~~~d~~--~l~~~~l~~i~~F~~~~~~lI~Gt~ 208 (591)
.+|.+.|.+...+.+-.-+|.|.. +.+.+|.+++++|..+.++ .-...-+.|+.+.++.|...+...+
T Consensus 296 ~~L~~~L~~~L~~~i~~~lP~l~~---~i~~~l~~~~~el~~lg~~~~~~~~~~~~~l~~~~~~f~~~~~~~~ 365 (608)
T 3szr_A 296 PCLAEKLTSELITHICKSLPLLEN---QIKETHQRITEELQKYGVDIPEDENEKMFFLIDKVNAFNQDITALM 365 (608)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHTSCCCCCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHH---HHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 578999999888887777776665 5567999999999987432 2234456788899999999998753
No 110
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=26.10 E-value=63 Score=29.65 Aligned_cols=43 Identities=21% Similarity=0.286 Sum_probs=30.7
Q ss_pred CCceEEEEeccCC--chhhh--hHHHHHHhcCCCCCceEEEeeccccc
Q 007717 3 HREFIILCLEDCS--DWSNA--TTRRVVMQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 3 ~~n~IILaV~~An--D~ANS--daLklakeVDP~g~RTIgV~TKlD~m 46 (591)
.-+++|+++...+ -+.+. .|++.+++..| +...|.|.||.|+.
T Consensus 105 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~ 151 (214)
T 2j1l_A 105 DASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCK-KVPIIVVGCKTDLR 151 (214)
T ss_dssp CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCS-SCCEEEEEECGGGG
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhh
Confidence 3467888887666 23332 47777777765 46789999999998
No 111
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=25.97 E-value=66 Score=28.96 Aligned_cols=45 Identities=11% Similarity=-0.031 Sum_probs=25.9
Q ss_pred CCCceEEEEeccCC-chhhh--hHHHHH-HhcCCCCCceEEEeeccccc
Q 007717 2 QHREFIILCLEDCS-DWSNA--TTRRVV-MQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 2 ~~~n~IILaV~~An-D~ANS--daLkla-keVDP~g~RTIgV~TKlD~m 46 (591)
..-+++|+++...+ +.-.. .+++.. +.........|.|.||.|+.
T Consensus 94 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 142 (201)
T 3oes_A 94 IGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLS 142 (201)
T ss_dssp TTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCG
T ss_pred hcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCc
Confidence 34577888887776 32111 233333 33345567899999999986
No 112
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=25.78 E-value=30 Score=35.45 Aligned_cols=56 Identities=18% Similarity=0.151 Sum_probs=39.1
Q ss_pred CceEEEEeccCCchhhhhHHHHHHhcCCCCCceEEEeecccccccCCCchhhHhhhcCCCccc
Q 007717 4 REFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKLDTKIPQFARASDVEVFLSPPACT 66 (591)
Q Consensus 4 ~n~IILaV~~AnD~ANSdaLklakeVDP~g~RTIgV~TKlD~ml~qfd~gtDv~~~L~g~~~~ 66 (591)
|+-.++.+.+.+ ..+++..++.......-|+.|+||+|-- .++..+..++.-.+.|
T Consensus 242 ~de~llvLDa~t---~~~~~~~~~~~~~~~~it~iilTKlD~~----a~~G~~l~~~~~~~~p 297 (328)
T 3e70_C 242 PNLVIFVGDALA---GNAIVEQARQFNEAVKIDGIILTKLDAD----ARGGAALSISYVIDAP 297 (328)
T ss_dssp CSEEEEEEEGGG---TTHHHHHHHHHHHHSCCCEEEEECGGGC----SCCHHHHHHHHHHTCC
T ss_pred CCCCEEEEecHH---HHHHHHHHHHHHHhcCCCEEEEeCcCCc----cchhHHHHHHHHHCCC
Confidence 344556665444 2467778888777777899999999987 7777777766644444
No 113
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=25.44 E-value=65 Score=29.29 Aligned_cols=44 Identities=23% Similarity=0.314 Sum_probs=31.3
Q ss_pred CCCceEEEEeccCC--chhhh--hHHHHHHhcCCCCCceEEEeeccccc
Q 007717 2 QHREFIILCLEDCS--DWSNA--TTRRVVMQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 2 ~~~n~IILaV~~An--D~ANS--daLklakeVDP~g~RTIgV~TKlD~m 46 (591)
..-+++|+++...+ -+.+. .+++..++.. .+.-.|.|.||.|+.
T Consensus 100 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~ 147 (204)
T 4gzl_A 100 PQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLR 147 (204)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHH
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhc
Confidence 35578888887776 23332 4677777665 356789999999998
No 114
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=25.30 E-value=80 Score=27.95 Aligned_cols=44 Identities=9% Similarity=0.064 Sum_probs=29.0
Q ss_pred CCceEEEEeccCC-ch-hh-hhHHHHH-HhcCCCCCceEEEeeccccc
Q 007717 3 HREFIILCLEDCS-DW-SN-ATTRRVV-MQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 3 ~~n~IILaV~~An-D~-AN-SdaLkla-keVDP~g~RTIgV~TKlD~m 46 (591)
.-+++|+++...+ +- .+ ..|+..+ +.+.......|.|.||.|+.
T Consensus 93 ~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 140 (189)
T 1z06_A 93 NVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR 140 (189)
T ss_dssp TCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCG
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 4567888887766 21 11 2244444 44456778899999999996
No 115
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=25.25 E-value=88 Score=26.49 Aligned_cols=43 Identities=19% Similarity=0.201 Sum_probs=28.0
Q ss_pred CceEEEEeccCC-c-hhh-hhHHH-HHHhcCCCCCceEEEeeccccc
Q 007717 4 REFIILCLEDCS-D-WSN-ATTRR-VVMQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 4 ~n~IILaV~~An-D-~AN-SdaLk-lakeVDP~g~RTIgV~TKlD~m 46 (591)
-+++|+++...+ + +.+ ..++. +.+...+.+...|.|.||.|+.
T Consensus 75 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 121 (167)
T 1c1y_A 75 GQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 121 (167)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCG
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECcccc
Confidence 357788877665 2 222 12333 3344566778899999999997
No 116
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=25.19 E-value=83 Score=27.44 Aligned_cols=43 Identities=14% Similarity=0.183 Sum_probs=28.2
Q ss_pred CceEEEEeccCC-c-hhh-hhHHH-HHHhcCCCCCceEEEeeccccc
Q 007717 4 REFIILCLEDCS-D-WSN-ATTRR-VVMQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 4 ~n~IILaV~~An-D-~AN-SdaLk-lakeVDP~g~RTIgV~TKlD~m 46 (591)
-+++|+++...+ + +.+ ..++. +.+...+.+...|.|.||.|+.
T Consensus 90 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 136 (183)
T 3kkq_A 90 GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLM 136 (183)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCS
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCch
Confidence 467888887765 2 111 12333 3344577788899999999986
No 117
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=25.16 E-value=49 Score=28.69 Aligned_cols=44 Identities=16% Similarity=0.213 Sum_probs=28.1
Q ss_pred CCceEEEEeccCC-c-hhhh-hHHHHHHhcCC---CCCceEEEeeccccc
Q 007717 3 HREFIILCLEDCS-D-WSNA-TTRRVVMQIDP---ELKRTIIVSTKLDTK 46 (591)
Q Consensus 3 ~~n~IILaV~~An-D-~ANS-daLklakeVDP---~g~RTIgV~TKlD~m 46 (591)
.-+++|+++...+ + +.+. .+++.+++..+ .....|.|.||.|+.
T Consensus 79 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~ 128 (178)
T 2hxs_A 79 GAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLE 128 (178)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGG
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccc
Confidence 4568888887776 3 2222 35566665432 333468999999997
No 118
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=24.59 E-value=82 Score=27.35 Aligned_cols=43 Identities=7% Similarity=-0.008 Sum_probs=26.8
Q ss_pred CceEEEEeccCC-c-hhhhh-H---HHHHHhcCCCCCceEEEeeccccc
Q 007717 4 REFIILCLEDCS-D-WSNAT-T---RRVVMQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 4 ~n~IILaV~~An-D-~ANSd-a---LklakeVDP~g~RTIgV~TKlD~m 46 (591)
-+++|+++...+ + +.+.. | +...+...+.+...|.|.||.|+.
T Consensus 73 ~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (178)
T 2iwr_A 73 ADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS 121 (178)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCB
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 467888887766 2 22222 2 222333334577899999999984
No 119
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=24.41 E-value=65 Score=35.28 Aligned_cols=41 Identities=17% Similarity=0.238 Sum_probs=30.3
Q ss_pred ceEEEEeccCC-chhhhhHHHHHHhcCCCCCceEEEeeccccc
Q 007717 5 EFIILCLEDCS-DWSNATTRRVVMQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 5 n~IILaV~~An-D~ANSdaLklakeVDP~g~RTIgV~TKlD~m 46 (591)
++||+.|.+.+ ++.. ....+.+.+...+...|+|+||.|+.
T Consensus 190 D~il~VvDa~~~~~~~-~~~~~l~~l~~~~~pvilVlNK~Dl~ 231 (550)
T 2qpt_A 190 DLIILLFDAHKLEISD-EFSEAIGALRGHEDKIRVVLNKADMV 231 (550)
T ss_dssp SEEEEEEETTSCCCCH-HHHHHHHHTTTCGGGEEEEEECGGGS
T ss_pred CEEEEEEeCCcCCCCH-HHHHHHHHHHhcCCCEEEEEECCCcc
Confidence 56777776655 5544 34566677777788899999999998
No 120
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=24.07 E-value=52 Score=31.97 Aligned_cols=40 Identities=18% Similarity=0.348 Sum_probs=28.1
Q ss_pred CCceEEEEeccCC-chhhhhHHHHHHhcCCCCCceEEEeeccccc
Q 007717 3 HREFIILCLEDCS-DWSNATTRRVVMQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 3 ~~n~IILaV~~An-D~ANSdaLklakeVDP~g~RTIgV~TKlD~m 46 (591)
..+++|+++..+| + .+ +.+..++-..+...|.|+||.|+.
T Consensus 83 ~~d~ii~V~D~t~~~-~~---~~~~~~l~~~~~pvilv~NK~Dl~ 123 (258)
T 3a1s_A 83 DADLVILVADSVNPE-QS---LYLLLEILEMEKKVILAMTAIDEA 123 (258)
T ss_dssp CCSEEEEEEETTSCH-HH---HHHHHHHHTTTCCEEEEEECHHHH
T ss_pred CCCEEEEEeCCCchh-hH---HHHHHHHHhcCCCEEEEEECcCCC
Confidence 5678888887776 3 22 334444444578899999999986
No 121
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=24.01 E-value=81 Score=27.68 Aligned_cols=58 Identities=12% Similarity=0.062 Sum_probs=32.5
Q ss_pred CCceEEEEeccCC-ch-hh-hhHHHHHHhc-CCCCCceEEEeecccccccCCCchhhHhhhcC
Q 007717 3 HREFIILCLEDCS-DW-SN-ATTRRVVMQI-DPELKRTIIVSTKLDTKIPQFARASDVEVFLS 61 (591)
Q Consensus 3 ~~n~IILaV~~An-D~-AN-SdaLklakeV-DP~g~RTIgV~TKlD~ml~qfd~gtDv~~~L~ 61 (591)
.-+++|+++...+ +- .+ ..+++..++. .......|.|.||.|+.-.+.. ..++..+..
T Consensus 87 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~-~~~~~~~~~ 148 (195)
T 1x3s_A 87 GAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVD-RNEGLKFAR 148 (195)
T ss_dssp TCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSC-HHHHHHHHH
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccC-HHHHHHHHH
Confidence 4567888887766 21 11 1244444443 2456778999999999522222 234445543
No 122
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=23.87 E-value=2.1e+02 Score=28.94 Aligned_cols=42 Identities=14% Similarity=0.067 Sum_probs=27.6
Q ss_pred CceEEEEeccCC----chhh-hhHHHHHHhcCCCCCceEEEeeccccc
Q 007717 4 REFIILCLEDCS----DWSN-ATTRRVVMQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 4 ~n~IILaV~~An----D~AN-SdaLklakeVDP~g~RTIgV~TKlD~m 46 (591)
.+++|+++..++ |+.+ ..++..+++.-+ +.-.|.|.||.|+.
T Consensus 247 ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~ 293 (357)
T 2e87_A 247 GNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVA 293 (357)
T ss_dssp CSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTC
T ss_pred CCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccC
Confidence 456777776443 3333 335555555444 78899999999997
No 123
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=23.58 E-value=42 Score=29.23 Aligned_cols=43 Identities=21% Similarity=0.251 Sum_probs=29.7
Q ss_pred cCCCCceEeecCCCC--CCCCccccCChHHHHHHHhhhhhhHHHH
Q 007717 72 LGGSPFFTSVPSGRV--GTGHDSVYSSNEEFKQAIFIREMEDITS 114 (591)
Q Consensus 72 lG~~pFFvsvp~~R~--g~~~D~v~~s~~~f~~ai~~~~~~d~~~ 114 (591)
.|+.-.||+.|+.+. |.-+|.+..-+++||+.|...=++.|..
T Consensus 41 eg~~GlFVaMPSrk~~~Gey~DI~hPit~e~Re~i~~aVl~aY~~ 85 (100)
T 2ia9_A 41 DGNNGLFVAMPSKRTPDGEFRDITHPINSSTRGKIQDAVLNEYHR 85 (100)
T ss_dssp EETTEEEEECCEEECTTSCEEESEEESSHHHHHHHHHHHHHHHHH
T ss_pred ECCCceEEECCCcCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHH
Confidence 455567999999553 3466777778888888776665555443
No 124
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=23.29 E-value=38 Score=36.20 Aligned_cols=56 Identities=21% Similarity=0.187 Sum_probs=38.4
Q ss_pred CceEEEEeccCCchhhhhHHHHHHhcCCCCCceEEEeecccccccCCCchhhHhhhcCCCccc
Q 007717 4 REFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKLDTKIPQFARASDVEVFLSPPACT 66 (591)
Q Consensus 4 ~n~IILaV~~AnD~ANSdaLklakeVDP~g~RTIgV~TKlD~ml~qfd~gtDv~~~L~g~~~~ 66 (591)
|..+||.|.+.. ..++...++...+...-|-.|+||+|-. .++..+..+..-.+.|
T Consensus 211 pd~vlLVvDa~t---gq~av~~a~~f~~~l~i~GVIlTKlD~~----~~~g~alsi~~~~g~P 266 (425)
T 2ffh_A 211 PDEVLLVLDAMT---GQEALSVARAFDEKVGVTGLVLTKLDGD----ARGGAALSARHVTGKP 266 (425)
T ss_dssp CSEEEEEEEGGG---TTHHHHHHHHHHHHTCCCEEEEESGGGC----SSCHHHHHHHHHHCCC
T ss_pred CceEEEEEeccc---hHHHHHHHHHHHhcCCceEEEEeCcCCc----ccHHHHHHHHHHHCCC
Confidence 566777666543 3567777888777666688899999988 6676676665533333
No 125
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=23.18 E-value=55 Score=33.27 Aligned_cols=42 Identities=21% Similarity=0.318 Sum_probs=26.1
Q ss_pred ceEEEEeccCC-chhhhhHHHHHHhcCCCCCceEEEeeccccc
Q 007717 5 EFIILCLEDCS-DWSNATTRRVVMQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 5 n~IILaV~~An-D~ANSdaLklakeVDP~g~RTIgV~TKlD~m 46 (591)
+.||+.+...+ +.....--++...+-..+...|.|+||.|+.
T Consensus 88 D~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~ 130 (307)
T 1t9h_A 88 DQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLI 130 (307)
T ss_dssp CEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGC
T ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccC
Confidence 34555554444 5555432233333345688999999999998
No 126
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=22.79 E-value=75 Score=30.82 Aligned_cols=44 Identities=23% Similarity=0.347 Sum_probs=32.1
Q ss_pred CCCceEEEEeccCC-c-hhhh--hHHHHHHhcCCCCCceEEEeeccccc
Q 007717 2 QHREFIILCLEDCS-D-WSNA--TTRRVVMQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 2 ~~~n~IILaV~~An-D-~ANS--daLklakeVDP~g~RTIgV~TKlD~m 46 (591)
+.-+++|+++..++ + +.+. .+++.+++..| +...|.|.||.|+.
T Consensus 225 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~ 272 (332)
T 2wkq_A 225 PQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP-NTPIILVGTKLDLR 272 (332)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-TSCEEEEEECHHHH
T ss_pred cCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCC-CCcEEEEEEchhcc
Confidence 34578888887776 2 3332 46677777766 77899999999997
No 127
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=22.66 E-value=82 Score=31.97 Aligned_cols=81 Identities=10% Similarity=0.102 Sum_probs=51.0
Q ss_pred CceEEEEeccCCchhhhhHHHHHHhcCCCCCceEEEeecccccccCCCchhhHhhhcCCCcccCCccccCCCCceEeecC
Q 007717 4 REFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKLDTKIPQFARASDVEVFLSPPACTLDGFILGGSPFFTSVPS 83 (591)
Q Consensus 4 ~n~IILaV~~AnD~ANSdaLklakeVDP~g~RTIgV~TKlD~ml~qfd~gtDv~~~L~g~~~~L~~~llG~~pFFvsvp~ 83 (591)
+..++|.|.+... .++++.+++..+...-+=.|+||+|.. .++..+..++.--+.|+. |+++.-
T Consensus 228 ~d~vllVl~a~~~---~~~l~~~~~~~~~~~i~GvVltk~d~~----~~~g~~~~~~~~~~~Pi~---------~i~~Ge 291 (320)
T 1zu4_A 228 PHEVLLVIDATTG---QNGVIQAEEFSKVADVSGIILTKMDST----SKGGIGLAIKELLNIPIK---------MIGVGE 291 (320)
T ss_dssp CSEEEEEEEGGGT---HHHHHHHHHHTTTSCCCEEEEECGGGC----SCTTHHHHHHHHHCCCEE---------EEECSS
T ss_pred CceEEEEEECCCc---HHHHHHHHHHhhcCCCcEEEEeCCCCC----CchhHHHHHHHHHCcCEE---------EEeCCC
Confidence 5566676655432 467777888887766566789999988 677777777664444443 888744
Q ss_pred CCCCCCCccccCChHHHHHHH
Q 007717 84 GRVGTGHDSVYSSNEEFKQAI 104 (591)
Q Consensus 84 ~R~g~~~D~v~~s~~~f~~ai 104 (591)
++ .|...-+.+.|.+++
T Consensus 292 -~~---~dl~~~~~~~~~~~l 308 (320)
T 1zu4_A 292 -KV---DDLLAFDIDQYIVHL 308 (320)
T ss_dssp -ST---TCEEECCHHHHHHHH
T ss_pred -Cc---cccccCCHHHHHHHH
Confidence 22 343334555555444
No 128
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=22.27 E-value=1.1e+02 Score=26.10 Aligned_cols=43 Identities=16% Similarity=0.150 Sum_probs=27.9
Q ss_pred CceEEEEeccCC-c-hhhh-hHH-HHHHhcCCCCCceEEEeeccccc
Q 007717 4 REFIILCLEDCS-D-WSNA-TTR-RVVMQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 4 ~n~IILaV~~An-D-~ANS-daL-klakeVDP~g~RTIgV~TKlD~m 46 (591)
.+++|+++...+ + +.+. .++ .+.+...+.+.-.|.|.||.|+.
T Consensus 76 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 122 (169)
T 3q85_A 76 GDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA 122 (169)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCG
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchh
Confidence 467888887766 2 2221 233 34444444678899999999986
No 129
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=22.09 E-value=93 Score=26.48 Aligned_cols=44 Identities=14% Similarity=0.141 Sum_probs=25.9
Q ss_pred CCceEEEEeccCC-c-hhhh-hHH-HHHHhcCCCCCceEEEeeccccc
Q 007717 3 HREFIILCLEDCS-D-WSNA-TTR-RVVMQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 3 ~~n~IILaV~~An-D-~ANS-daL-klakeVDP~g~RTIgV~TKlD~m 46 (591)
.-+++|+++..++ + +.+. .++ .+.+.....+.-.|.|.||.|+.
T Consensus 72 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 119 (166)
T 3q72_A 72 MGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 119 (166)
T ss_dssp -CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCC
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccc
Confidence 4567888887766 3 1221 233 33334455677889999999987
No 130
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=21.46 E-value=93 Score=26.81 Aligned_cols=58 Identities=14% Similarity=0.255 Sum_probs=33.2
Q ss_pred CCceEEEEeccCC-c-hhh-hhHHHHHHhc----CCCCCceEEEeecccccccCCCchhhHhhhcC
Q 007717 3 HREFIILCLEDCS-D-WSN-ATTRRVVMQI----DPELKRTIIVSTKLDTKIPQFARASDVEVFLS 61 (591)
Q Consensus 3 ~~n~IILaV~~An-D-~AN-SdaLklakeV----DP~g~RTIgV~TKlD~ml~qfd~gtDv~~~L~ 61 (591)
.-+++|+++...+ + +.+ ..+++..+.. +..+...|.|.||.|+.-.+ -...++..+..
T Consensus 79 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~-~~~~~~~~~~~ 143 (177)
T 1wms_A 79 GSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQ-VSTEEAQAWCR 143 (177)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCS-SCHHHHHHHHH
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccc-cCHHHHHHHHH
Confidence 4567888887766 3 211 1234443332 23667889999999997112 12345555554
No 131
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=21.43 E-value=79 Score=26.83 Aligned_cols=43 Identities=16% Similarity=0.155 Sum_probs=27.9
Q ss_pred CCceEEEEeccCC-c-hhhh-hHHHHHHhcCCCCCceEEEeeccccc
Q 007717 3 HREFIILCLEDCS-D-WSNA-TTRRVVMQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 3 ~~n~IILaV~~An-D-~ANS-daLklakeVDP~g~RTIgV~TKlD~m 46 (591)
.-+++|+++...+ + +.+. .++..+++.- .....|.|.||.|+.
T Consensus 77 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~ 122 (168)
T 1z2a_A 77 GAQACVLVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLL 122 (168)
T ss_dssp TCCEEEEEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGG
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccC
Confidence 4567888887776 3 2222 2444444433 456789999999997
No 132
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=21.22 E-value=51 Score=34.27 Aligned_cols=52 Identities=21% Similarity=0.192 Sum_probs=33.0
Q ss_pred CCCceEEEEeccCC--chhhhhHHHHHHhcCCCCCceEEEeecccccccCCCchhhHhhhcCC
Q 007717 2 QHREFIILCLEDCS--DWSNATTRRVVMQIDPELKRTIIVSTKLDTKIPQFARASDVEVFLSP 62 (591)
Q Consensus 2 ~~~n~IILaV~~An--D~ANSdaLklakeVDP~g~RTIgV~TKlD~ml~qfd~gtDv~~~L~g 62 (591)
..|.-+||.+.|.+ |..+ .+++.......|+.|+||+|-- .+|-.+..++.-
T Consensus 275 ~~P~e~lLvLDpttglD~~~-----~~~~~~~~~g~t~iiiThlD~~----~~gG~~lsi~~~ 328 (359)
T 2og2_A 275 GAPNEILLVLDGNTGLNMLP-----QAREFNEVVGITGLILTKLDGS----ARGGCVVSVVEE 328 (359)
T ss_dssp TCCSEEEEEEEGGGGGGGHH-----HHHHHHHHTCCCEEEEESCTTC----SCTHHHHHHHHH
T ss_pred cCCCceEEEEcCCCCCCHHH-----HHHHHHHhcCCeEEEEecCccc----ccccHHHHHHHH
Confidence 45664455555554 5443 3344433334799999999987 888888777653
No 133
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=21.22 E-value=1e+02 Score=27.13 Aligned_cols=43 Identities=7% Similarity=0.018 Sum_probs=26.6
Q ss_pred CceEEEEeccC-C--chhhh-hHH-HHHHhc---CCCCCceEEEeeccccc
Q 007717 4 REFIILCLEDC-S--DWSNA-TTR-RVVMQI---DPELKRTIIVSTKLDTK 46 (591)
Q Consensus 4 ~n~IILaV~~A-n--D~ANS-daL-klakeV---DP~g~RTIgV~TKlD~m 46 (591)
.+++|+++..+ + .+.+. .++ .+.... -+.+...|.|.||.|+.
T Consensus 119 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 169 (193)
T 2ged_A 119 VKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELF 169 (193)
T ss_dssp EEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTST
T ss_pred CCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhc
Confidence 46888888777 4 22111 222 222222 45677899999999997
No 134
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=20.71 E-value=79 Score=28.58 Aligned_cols=43 Identities=9% Similarity=0.151 Sum_probs=26.2
Q ss_pred CceEEEEeccCC-ch----hhhhHHHHHHh--cCCCCCceEEEeeccccc
Q 007717 4 REFIILCLEDCS-DW----SNATTRRVVMQ--IDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 4 ~n~IILaV~~An-D~----ANSdaLklake--VDP~g~RTIgV~TKlD~m 46 (591)
.+++|+++...+ += .-..+.++.+. ..+.....|.|.||.|+.
T Consensus 79 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 128 (214)
T 2fh5_B 79 ARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIA 128 (214)
T ss_dssp EEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTST
T ss_pred CCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCC
Confidence 467888887655 21 11112233332 345567899999999997
No 135
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=20.02 E-value=91 Score=31.11 Aligned_cols=43 Identities=12% Similarity=0.124 Sum_probs=27.2
Q ss_pred CCceEEEEeccCCchhhhh--HHHHHHhcCCCCCceEEEeeccccc
Q 007717 3 HREFIILCLEDCSDWSNAT--TRRVVMQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 3 ~~n~IILaV~~AnD~ANSd--aLklakeVDP~g~RTIgV~TKlD~m 46 (591)
.-+++|+++...+.+...+ .++.+++.. .+.-.|.|+||.|+.
T Consensus 86 ~ad~il~VvD~~~~~~~~~~~i~~~l~~~~-~~~p~ilV~NK~Dl~ 130 (301)
T 1wf3_A 86 DVNAVVWVVDLRHPPTPEDELVARALKPLV-GKVPILLVGNKLDAA 130 (301)
T ss_dssp SCSEEEEEEETTSCCCHHHHHHHHHHGGGT-TTSCEEEEEECGGGC
T ss_pred cCCEEEEEEECCCCCChHHHHHHHHHHhhc-CCCCEEEEEECcccC
Confidence 3467777777665443332 234444443 256789999999997
No 136
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=20.02 E-value=68 Score=32.01 Aligned_cols=39 Identities=18% Similarity=0.085 Sum_probs=26.8
Q ss_pred ceEEEEeccCC-chhhh---hHHHHHHhcCCCCCceEEEeeccccc
Q 007717 5 EFIILCLEDCS-DWSNA---TTRRVVMQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 5 n~IILaV~~An-D~ANS---daLklakeVDP~g~RTIgV~TKlD~m 46 (591)
+.+|+.+...+ ++... .++..++. .+...|.|+||.|+.
T Consensus 81 D~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~ 123 (302)
T 2yv5_A 81 DRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLL 123 (302)
T ss_dssp CEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGC
T ss_pred CEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCC
Confidence 45666666655 54433 35655555 567889999999997
Done!