Query 007717
Match_columns 591
No_of_seqs 143 out of 224
Neff 5.0
Searched_HMMs 13730
Date Mon Mar 25 08:45:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007717.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/007717hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jwyb_ c.37.1.8 (B:) Dynamin 99.7 1.6E-17 1.1E-21 166.1 12.3 138 1-163 165-305 (306)
2 d2akab1 c.37.1.8 (B:6-304) Dyn 99.7 2.8E-16 2E-20 156.0 13.6 137 1-162 159-298 (299)
3 d1wf3a1 c.37.1.8 (A:3-180) GTP 50.0 15 0.0011 30.8 6.7 52 4-60 85-138 (178)
4 d1mkya2 c.37.1.8 (A:173-358) P 40.1 11 0.00081 31.7 4.0 40 7-46 94-133 (186)
5 d1ksha_ c.37.1.8 (A:) ADP-ribo 32.9 19 0.0014 29.5 4.4 45 2-46 68-116 (165)
6 d2fu5c1 c.37.1.8 (C:3-175) Rab 30.8 48 0.0035 27.3 6.7 59 2-60 77-138 (173)
7 d1wmsa_ c.37.1.8 (A:) Rab9a {H 30.0 39 0.0029 27.9 6.0 59 2-61 77-142 (174)
8 d1wb1a4 c.37.1.8 (A:1-179) Elo 29.4 17 0.0013 30.8 3.5 42 4-46 83-124 (179)
9 d2ia9a1 d.366.1.1 (A:1-92) Put 27.7 15 0.0011 29.6 2.4 44 72-115 38-83 (92)
10 d2qn6a3 c.37.1.8 (A:2-206) Ini 24.7 34 0.0024 29.6 4.6 45 2-46 108-153 (205)
11 d2i9xa1 d.366.1.1 (A:1-84) Put 23.7 9.6 0.0007 30.2 0.5 40 72-111 38-79 (84)
12 d1ls1a2 c.37.1.10 (A:89-295) G 23.4 26 0.0019 31.4 3.7 56 3-66 122-178 (207)
13 d1zd9a1 c.37.1.8 (A:18-181) AD 21.9 40 0.0029 27.6 4.3 57 2-60 69-129 (164)
14 d1svia_ c.37.1.8 (A:) Probable 21.3 28 0.002 29.4 3.2 39 7-46 108-147 (195)
15 d2cxxa1 c.37.1.8 (A:2-185) GTP 20.6 12 0.00087 31.3 0.5 25 32-60 120-144 (184)
16 d1z06a1 c.37.1.8 (A:32-196) Ra 20.5 54 0.004 26.5 4.9 60 2-61 74-137 (165)
17 d3raba_ c.37.1.8 (A:) Rab3a {R 20.5 65 0.0047 26.3 5.5 45 2-46 76-123 (169)
18 d2f9la1 c.37.1.8 (A:8-182) Rab 20.1 52 0.0038 27.2 4.8 45 2-46 75-122 (175)
No 1
>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}
Probab=99.71 E-value=1.6e-17 Score=166.11 Aligned_cols=138 Identities=26% Similarity=0.328 Sum_probs=114.5
Q ss_pred CCCCceEEEEeccCC-chhhhhHHHHHHhcCCCCCceEEEeecccccccCCCchhhHhhhcCCCcccCCccccCCCCceE
Q 007717 1 MQHREFIILCLEDCS-DWSNATTRRVVMQIDPELKRTIIVSTKLDTKIPQFARASDVEVFLSPPACTLDGFILGGSPFFT 79 (591)
Q Consensus 1 i~~~n~IILaV~~An-D~ANSdaLklakeVDP~g~RTIgV~TKlD~ml~qfd~gtDv~~~L~g~~~~L~~~llG~~pFFv 79 (591)
|++++++||||.+++ ||.++.++++++++||.+.|||+|+||+|.. ++++++.++|.+...++. .| |.
T Consensus 165 i~~~~~~il~v~~~~~~~~~~~~~~~~~~~~~~~~r~i~Vitk~D~~----~~~~~~~~~l~~~~~~~~---~~----~~ 233 (306)
T d1jwyb_ 165 IKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLDLM----DKGTDAMEVLTGRVIPLT---LG----FI 233 (306)
T ss_dssp HHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTTSS----CSSCCCHHHHTTSSSCCT---TC----EE
T ss_pred HhCCCceeEEeecccccccccHHHHHHHHhCcCCCeEEEEEeccccc----cchhHHHHHHhCCccccc---CC----ce
Confidence 357899999999999 9999999999999999999999999999998 899999999998765544 55 66
Q ss_pred eecCCCCCCCCccccCChHHHHHHHhhhhhhHHHHHHHHh--CCCCchhhhhhcChhHHHHHHHHHHHHHHHhhhhhhHH
Q 007717 80 SVPSGRVGTGHDSVYSSNEEFKQAIFIREMEDITSLEEKL--GRSLSKQERSRIGVSKLRSFLEELLQKRYMDSVPMIIP 157 (591)
Q Consensus 80 svp~~R~g~~~D~v~~s~~~f~~ai~~~~~~d~~~le~~~--~~~~~~~~~~~~G~~~L~~~Ln~~L~~hyr~~lP~i~~ 157 (591)
.+++.+. .+ .....+.+++...|+.| +++.++.+.+++|+.+|+++|+++|++||+++||.|+.
T Consensus 234 ~~~~~~~---~~-----------~~~~~~~~~~~~~E~~~f~~~~~~~~l~~r~Gi~~L~~~L~~~L~~~i~~~lP~i~~ 299 (306)
T d1jwyb_ 234 GVINRSQ---ED-----------IIAKKSIRESLKSEILYFKNHPIYKSIANRSGTAYLSKTLNKLLMFHIRDTLPDLKV 299 (306)
T ss_dssp ECCCCCH---HH-----------HSSSCCHHHHHHHHHHHHHTCTTGGGSGGGCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeecCch---hh-----------ccccCCHHHHHHHHHHHHhCCchhcchHHHhhHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 7766222 11 11233555666667766 88899999999999999999999999999999999998
Q ss_pred HHHHHH
Q 007717 158 LLEKEY 163 (591)
Q Consensus 158 ~L~~~~ 163 (591)
.|++.+
T Consensus 300 ~i~~~L 305 (306)
T d1jwyb_ 300 KVSKML 305 (306)
T ss_dssp HHHHHT
T ss_pred HHHHhh
Confidence 887643
No 2
>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=99.65 E-value=2.8e-16 Score=155.97 Aligned_cols=137 Identities=23% Similarity=0.363 Sum_probs=108.2
Q ss_pred CCCCceEEEEeccCC-chhhhhHHHHHHhcCCCCCceEEEeecccccccCCCchhhHhhhcCCCcccCCccccCCCCceE
Q 007717 1 MQHREFIILCLEDCS-DWSNATTRRVVMQIDPELKRTIIVSTKLDTKIPQFARASDVEVFLSPPACTLDGFILGGSPFFT 79 (591)
Q Consensus 1 i~~~n~IILaV~~An-D~ANSdaLklakeVDP~g~RTIgV~TKlD~ml~qfd~gtDv~~~L~g~~~~L~~~llG~~pFFv 79 (591)
|++++++||||.+|+ ||.++.++.+++++||.+.|||||+||+|.. +++.+..+.+.+...++. .+ |.
T Consensus 159 ~~~~~~~il~v~~a~~~~~~~~~~~~~~~~~~~~~r~i~Vltk~D~~----~~~~~~~~~~~~~~~~~~---~~----~~ 227 (299)
T d2akab1 159 VTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLM----DEGTDARDVLENKLLPLR---RG----YI 227 (299)
T ss_dssp HTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGGGS----CTTCCCHHHHTTCSSCCT---TC----EE
T ss_pred hcCccceeeeecccccchhhhHHHHHHHHhCcCCCceeeEEeccccc----cchhhHHHHHhccccccc---CC----ee
Confidence 367899999999999 9999999999999999999999999999999 777888888887665444 33 55
Q ss_pred eecCCCCCCCCccccCChHHHHHHHhhhhhhHHHHHHHHh--CCCCchhhhhhcChhHHHHHHHHHHHHHHHhhhhhhHH
Q 007717 80 SVPSGRVGTGHDSVYSSNEEFKQAIFIREMEDITSLEEKL--GRSLSKQERSRIGVSKLRSFLEELLQKRYMDSVPMIIP 157 (591)
Q Consensus 80 svp~~R~g~~~D~v~~s~~~f~~ai~~~~~~d~~~le~~~--~~~~~~~~~~~~G~~~L~~~Ln~~L~~hyr~~lP~i~~ 157 (591)
.+.+ +. +.+ ..... +..+.+..|+++ .++.++...++||+.+|+++|+++|.+||++.+|.|+.
T Consensus 228 ~~~~-~~--~~~--~~~~~---------~~~~~~~~E~~~f~~~~~~~~l~~~~gi~~L~~~L~~~L~~~i~~~lp~i~~ 293 (299)
T d2akab1 228 GVVN-RS--QKD--IDGKK---------DITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRN 293 (299)
T ss_dssp ECCC-CC--CBC--TTSCB---------CHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeec-Cc--ccc--ccccC---------CHHHHHHHHHHHHhcCccccchHHhhCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544 22 122 11222 223344555554 67788899999999999999999999999999999998
Q ss_pred HHHHH
Q 007717 158 LLEKE 162 (591)
Q Consensus 158 ~L~~~ 162 (591)
.|+++
T Consensus 294 ~i~~~ 298 (299)
T d2akab1 294 KLQSQ 298 (299)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 88764
No 3
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=50.00 E-value=15 Score=30.78 Aligned_cols=52 Identities=10% Similarity=0.077 Sum_probs=31.8
Q ss_pred CceEEEEeccCCchhhh--hHHHHHHhcCCCCCceEEEeecccccccCCCchhhHhhhc
Q 007717 4 REFIILCLEDCSDWSNA--TTRRVVMQIDPELKRTIIVSTKLDTKIPQFARASDVEVFL 60 (591)
Q Consensus 4 ~n~IILaV~~AnD~ANS--daLklakeVDP~g~RTIgV~TKlD~ml~qfd~gtDv~~~L 60 (591)
-+.||+.+...+.+... .+.+..++..++ ...|+|+||.|+. ....+..+.+
T Consensus 85 ad~il~v~D~~~~~~~~~~~i~~~l~~~~~~-~piilv~NK~Dl~----~~~~~~~~~~ 138 (178)
T d1wf3a1 85 VNAVVWVVDLRHPPTPEDELVARALKPLVGK-VPILLVGNKLDAA----KYPEEAMKAY 138 (178)
T ss_dssp CSEEEEEEETTSCCCHHHHHHHHHHGGGTTT-SCEEEEEECGGGC----SSHHHHHHHH
T ss_pred ccceeeeechhhhhcccccchhhheeccccc-hhhhhhhcccccc----cCHHHHHHHH
Confidence 34566666554444333 345666666554 5689999999997 5555554433
No 4
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}
Probab=40.06 E-value=11 Score=31.66 Aligned_cols=40 Identities=13% Similarity=0.217 Sum_probs=30.1
Q ss_pred EEEEeccCCchhhhhHHHHHHhcCCCCCceEEEeeccccc
Q 007717 7 IILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 7 IILaV~~AnD~ANSdaLklakeVDP~g~RTIgV~TKlD~m 46 (591)
+|+.|-+|+++.......+...+.=.+...|.|+||.|+.
T Consensus 94 vii~v~d~~~~~~~~~~~~~~~~~~~~~~~i~v~nK~D~~ 133 (186)
T d1mkya2 94 VVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLV 133 (186)
T ss_dssp EEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGS
T ss_pred EEEEeecccccchhhHHHHHHHHHHcCCceeeeccchhhh
Confidence 4555667776656666666766666788999999999998
No 5
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}
Probab=32.92 E-value=19 Score=29.47 Aligned_cols=45 Identities=9% Similarity=0.120 Sum_probs=31.8
Q ss_pred CCCceEEEEeccCCchh----hhhHHHHHHhcCCCCCceEEEeeccccc
Q 007717 2 QHREFIILCLEDCSDWS----NATTRRVVMQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 2 ~~~n~IILaV~~AnD~A----NSdaLklakeVDP~g~RTIgV~TKlD~m 46 (591)
.....+|+++..++... .-.+.++.++....+...|+|.||.|+.
T Consensus 68 ~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 116 (165)
T d1ksha_ 68 ESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLP 116 (165)
T ss_dssp TTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred hhhhcceeeeecccchhHHHHHHhhhhhhhhcccCCCceEEEEeccccc
Confidence 45577888887765222 2334556666677888899999999986
No 6
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}
Probab=30.81 E-value=48 Score=27.33 Aligned_cols=59 Identities=12% Similarity=-0.013 Sum_probs=38.5
Q ss_pred CCCceEEEEeccCC-c--hhhhhHHHHHHhcCCCCCceEEEeecccccccCCCchhhHhhhc
Q 007717 2 QHREFIILCLEDCS-D--WSNATTRRVVMQIDPELKRTIIVSTKLDTKIPQFARASDVEVFL 60 (591)
Q Consensus 2 ~~~n~IILaV~~An-D--~ANSdaLklakeVDP~g~RTIgV~TKlD~ml~qfd~gtDv~~~L 60 (591)
+..+++|+++..++ + ..=..+.+..+...+....-|.|.+|.|.....-..-.++..+.
T Consensus 77 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~~~~~~~~~~~~~~ 138 (173)
T d2fu5c1 77 RGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLA 138 (173)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHH
T ss_pred cCCCEEEEEEECCChhhHHHHHHHHHHhhhhccCCceEEEEEecccchhhcccHHHHHHHHH
Confidence 45689999998776 2 22234556667788888999999999999854433344454444
No 7
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.01 E-value=39 Score=27.88 Aligned_cols=59 Identities=14% Similarity=0.186 Sum_probs=34.9
Q ss_pred CCCceEEEEeccCC--chhhh-hHH----HHHHhcCCCCCceEEEeecccccccCCCchhhHhhhcC
Q 007717 2 QHREFIILCLEDCS--DWSNA-TTR----RVVMQIDPELKRTIIVSTKLDTKIPQFARASDVEVFLS 61 (591)
Q Consensus 2 ~~~n~IILaV~~An--D~ANS-daL----klakeVDP~g~RTIgV~TKlD~ml~qfd~gtDv~~~L~ 61 (591)
....++|++....+ .+... .|+ ++.+..++.+..=|+|.||.|+.=.+- ...++..|..
T Consensus 77 ~~~~~~i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~~v-~~~~~~~~~~ 142 (174)
T d1wmsa_ 77 RGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQV-STEEAQAWCR 142 (174)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSS-CHHHHHHHHH
T ss_pred hccceEEEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhhccC-cHHHHHHHHH
Confidence 34567777776664 12211 133 333445677788999999999862221 2456666664
No 8
>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}
Probab=29.42 E-value=17 Score=30.80 Aligned_cols=42 Identities=17% Similarity=0.165 Sum_probs=32.1
Q ss_pred CceEEEEeccCCchhhhhHHHHHHhcCCCCCceEEEeeccccc
Q 007717 4 REFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 4 ~n~IILaV~~AnD~ANSdaLklakeVDP~g~RTIgV~TKlD~m 46 (591)
.+.+||.+.....+ ...++.+.+.++-.+.-.|.|+||.|+.
T Consensus 83 ~d~~ilv~d~~~g~-~~~~~~~~~~~~~~~~p~iiv~NKiD~~ 124 (179)
T d1wb1a4 83 IDLALIVVDAKEGP-KTQTGEHMLILDHFNIPIIVVITKSDNA 124 (179)
T ss_dssp CCEEEEEEETTTCS-CHHHHHHHHHHHHTTCCBCEEEECTTSS
T ss_pred cccccccccccccc-chhhhhhhhhhhhcCCcceecccccccc
Confidence 45677777555554 3456778888888899999999999987
No 9
>d2ia9a1 d.366.1.1 (A:1-92) Putative septation protein SpoVG {Bacillus subtilis [TaxId: 1423]}
Probab=27.73 E-value=15 Score=29.57 Aligned_cols=44 Identities=20% Similarity=0.215 Sum_probs=29.3
Q ss_pred cCCCCceEeecCCCCCC--CCccccCChHHHHHHHhhhhhhHHHHH
Q 007717 72 LGGSPFFTSVPSGRVGT--GHDSVYSSNEEFKQAIFIREMEDITSL 115 (591)
Q Consensus 72 lG~~pFFvsvp~~R~g~--~~D~v~~s~~~f~~ai~~~~~~d~~~l 115 (591)
.|....||+.|+.+.+. -+|.++.-+++||+.|.+.=++.|...
T Consensus 38 eg~~GlFVaMPs~k~~~g~y~Di~~Pi~~e~R~~i~~avl~aY~~~ 83 (92)
T d2ia9a1 38 DGNNGLFVAMPSKRTPDGEFRDITHPINSSTRGKIQDAVLNEYHRL 83 (92)
T ss_dssp EETTEEEEECCEEECTTSCEEESEEESSHHHHHHHHHHHHHHHHHH
T ss_pred ECCCCcEEECCCcCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHH
Confidence 56666899999966542 356666677888877766655555443
No 10
>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}
Probab=24.66 E-value=34 Score=29.61 Aligned_cols=45 Identities=20% Similarity=0.171 Sum_probs=28.8
Q ss_pred CCCceEEEEeccCCchhhhhHHHHHHhcCCCCC-ceEEEeeccccc
Q 007717 2 QHREFIILCLEDCSDWSNATTRRVVMQIDPELK-RTIIVSTKLDTK 46 (591)
Q Consensus 2 ~~~n~IILaV~~AnD~ANSdaLklakeVDP~g~-RTIgV~TKlD~m 46 (591)
+.-++.||.|.+...+....++.....+.=-|. +.|.|+||.|+.
T Consensus 108 ~~ad~ailvVda~~gi~~~~t~e~~~~~~~~~i~~iIV~vNK~Dl~ 153 (205)
T d2qn6a3 108 ALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVV 153 (205)
T ss_dssp SCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECGGGS
T ss_pred eccccccccccccccccchhHHHHHHHHHHcCCceeeeccccCCCc
Confidence 345677777755446656665555554444454 556779999998
No 11
>d2i9xa1 d.366.1.1 (A:1-84) Putative septation protein SpoVG {Staphylococcus epidermidis [TaxId: 1282]}
Probab=23.67 E-value=9.6 Score=30.21 Aligned_cols=40 Identities=28% Similarity=0.289 Sum_probs=27.0
Q ss_pred cCCCCceEeecCCCCCC--CCccccCChHHHHHHHhhhhhhH
Q 007717 72 LGGSPFFTSVPSGRVGT--GHDSVYSSNEEFKQAIFIREMED 111 (591)
Q Consensus 72 lG~~pFFvsvp~~R~g~--~~D~v~~s~~~f~~ai~~~~~~d 111 (591)
.|+...||+.|+.|.+- -+|.++.-++++|+.|.+.=++.
T Consensus 38 eg~~GlFVamPs~k~~~g~y~Di~~Pi~~e~R~~i~~avl~a 79 (84)
T d2i9xa1 38 EGNSGLFVAMPSKRTPDGEFRDIAHPINSDMRQEIQDAVMKV 79 (84)
T ss_dssp EETTEEEEECCEEECTTSCEEECEEECSHHHHHHHHHHHHHH
T ss_pred ECCCCcEEECCCcCCCCCCEEEEEEECCHHHHHHHHHHHHHH
Confidence 55566899999966532 45667778888888665553333
No 12
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Probab=23.41 E-value=26 Score=31.35 Aligned_cols=56 Identities=18% Similarity=0.126 Sum_probs=35.8
Q ss_pred CCceEEEEeccCC-chhhhhHHHHHHhcCCCCCceEEEeecccccccCCCchhhHhhhcCCCccc
Q 007717 3 HREFIILCLEDCS-DWSNATTRRVVMQIDPELKRTIIVSTKLDTKIPQFARASDVEVFLSPPACT 66 (591)
Q Consensus 3 ~~n~IILaV~~An-D~ANSdaLklakeVDP~g~RTIgV~TKlD~ml~qfd~gtDv~~~L~g~~~~ 66 (591)
+|.-++|++++.. +=+-..+..--+.++++| .|+||+|-- .++-.+..+..--+.|
T Consensus 122 ~~~~~llv~~a~~~~~~~~~~~~f~~~~~~~~----~I~TKlDe~----~~~G~~l~~~~~~~~P 178 (207)
T d1ls1a2 122 GPDEVLLVLDAMTGQEALSVARAFDEKVGVTG----LVLTKLDGD----ARGGAALSARHVTGKP 178 (207)
T ss_dssp CCSEEEEEEEGGGTHHHHHHHHHHHHHTCCCE----EEEECGGGC----SSCHHHHHHHHHHCCC
T ss_pred CCceEEEEeccccchhHHHHHHHHHhhCCCCe----eEEeecCcc----ccchHHHHHHHHHCCC
Confidence 4566777777765 433334444445577766 899999988 7777776666543333
No 13
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}
Probab=21.88 E-value=40 Score=27.57 Aligned_cols=57 Identities=7% Similarity=0.050 Sum_probs=38.8
Q ss_pred CCCceEEEEeccCC----chhhhhHHHHHHhcCCCCCceEEEeecccccccCCCchhhHhhhc
Q 007717 2 QHREFIILCLEDCS----DWSNATTRRVVMQIDPELKRTIIVSTKLDTKIPQFARASDVEVFL 60 (591)
Q Consensus 2 ~~~n~IILaV~~An----D~ANSdaLklakeVDP~g~RTIgV~TKlD~ml~qfd~gtDv~~~L 60 (591)
...+++|+++...+ +.+-.....+.++.++...--+.|.||.|+- ....-.++.+.+
T Consensus 69 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~--~~~~~~~i~~~~ 129 (164)
T d1zd9a1 69 RGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLP--GALDEKELIEKM 129 (164)
T ss_dssp TTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTST--TCCCHHHHHHHT
T ss_pred cccchhhcccccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccc--hhhhHHHHHHHH
Confidence 35678899887654 2333345667888888888999999999964 222344555555
No 14
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}
Probab=21.31 E-value=28 Score=29.43 Aligned_cols=39 Identities=15% Similarity=0.055 Sum_probs=25.7
Q ss_pred EEEEeccCC-chhhhhHHHHHHhcCCCCCceEEEeeccccc
Q 007717 7 IILCLEDCS-DWSNATTRRVVMQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 7 IILaV~~An-D~ANSdaLklakeVDP~g~RTIgV~TKlD~m 46 (591)
+|+.|-+|+ .+- ....++.+.+...+...|+|+||.|+.
T Consensus 108 ~vi~viD~~~~~~-~~~~~~~~~l~~~~~piivv~NK~D~~ 147 (195)
T d1svia_ 108 AVVQIVDLRHAPS-NDDVQMYEFLKYYGIPVIVIATKADKI 147 (195)
T ss_dssp EEEEEEETTSCCC-HHHHHHHHHHHHTTCCEEEEEECGGGS
T ss_pred hhhhhhhcccccc-ccccccccccccccCcceechhhcccc
Confidence 344455665 543 344555555555677799999999986
No 15
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}
Probab=20.65 E-value=12 Score=31.25 Aligned_cols=25 Identities=32% Similarity=0.291 Sum_probs=18.4
Q ss_pred CCCceEEEeecccccccCCCchhhHhhhc
Q 007717 32 ELKRTIIVSTKLDTKIPQFARASDVEVFL 60 (591)
Q Consensus 32 ~g~RTIgV~TKlD~ml~qfd~gtDv~~~L 60 (591)
.+...|.|+||.|+. .+...+.+++
T Consensus 120 ~~~p~iiv~NK~D~~----~~~~~~~~~~ 144 (184)
T d2cxxa1 120 LDIPTIVAVNKLDKI----KNVQEVINFL 144 (184)
T ss_dssp TTCCEEEEEECGGGC----SCHHHHHHHH
T ss_pred cCCCEEEEEeeeehh----hhHHHHHHHH
Confidence 356789999999987 6565555444
No 16
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.47 E-value=54 Score=26.47 Aligned_cols=60 Identities=8% Similarity=0.068 Sum_probs=36.5
Q ss_pred CCCceEEEEeccCC-c-hhhh-hHHH-HHHhcCCCCCceEEEeecccccccCCCchhhHhhhcC
Q 007717 2 QHREFIILCLEDCS-D-WSNA-TTRR-VVMQIDPELKRTIIVSTKLDTKIPQFARASDVEVFLS 61 (591)
Q Consensus 2 ~~~n~IILaV~~An-D-~ANS-daLk-lakeVDP~g~RTIgV~TKlD~ml~qfd~gtDv~~~L~ 61 (591)
+.-+++||+..-.+ + +.+. .++. +.+.........|.|.||.|+.-+.=-.-.++..|-.
T Consensus 74 ~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~~ 137 (165)
T d1z06a1 74 RNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFAD 137 (165)
T ss_dssp TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH
T ss_pred cCCCceEEEEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHHHHH
Confidence 45678999998776 3 2222 2343 3444666778899999999987221112345556554
No 17
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=20.46 E-value=65 Score=26.34 Aligned_cols=45 Identities=11% Similarity=0.098 Sum_probs=33.0
Q ss_pred CCCceEEEEeccCC--chhh-hhHHHHHHhcCCCCCceEEEeeccccc
Q 007717 2 QHREFIILCLEDCS--DWSN-ATTRRVVMQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 2 ~~~n~IILaV~~An--D~AN-SdaLklakeVDP~g~RTIgV~TKlD~m 46 (591)
+.-+++||++..++ -+.+ ..+...++..++....-|.|.||.|+.
T Consensus 76 ~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 123 (169)
T d3raba_ 76 RGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDME 123 (169)
T ss_dssp TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCG
T ss_pred hcCCEEEEEEECccchhhhhhhhhhhhhhcccCCcceEEEEEeecccc
Confidence 45678999997776 2222 235677788888877778888999976
No 18
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.13 E-value=52 Score=27.16 Aligned_cols=45 Identities=9% Similarity=-0.069 Sum_probs=32.0
Q ss_pred CCCceEEEEeccCC-c--hhhhhHHHHHHhcCCCCCceEEEeeccccc
Q 007717 2 QHREFIILCLEDCS-D--WSNATTRRVVMQIDPELKRTIIVSTKLDTK 46 (591)
Q Consensus 2 ~~~n~IILaV~~An-D--~ANSdaLklakeVDP~g~RTIgV~TKlD~m 46 (591)
+..+++|++...++ + ..-..+++-+++.-+.+..-|+|.||.|+.
T Consensus 75 ~~~~~~i~v~d~~~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~ 122 (175)
T d2f9la1 75 RGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLR 122 (175)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred hccCeEEEEEECCCcccchhHHHHHHHHHHhcCCCCcEEEEEeeeccc
Confidence 34678888888776 2 233345666666666677888899999997
Done!