Query 007718
Match_columns 591
No_of_seqs 343 out of 2166
Neff 8.3
Searched_HMMs 46136
Date Thu Mar 28 14:24:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007718.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007718hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03788 marine_srt_targ mari 100.0 1.5E-73 3.2E-78 636.8 61.1 486 86-590 2-530 (596)
2 PF13768 VWA_3: von Willebrand 99.9 1E-25 2.2E-30 209.1 17.4 153 326-485 1-155 (155)
3 cd01461 vWA_interalpha_trypsin 99.9 2E-24 4.3E-29 203.4 20.6 170 324-497 1-170 (171)
4 PF08487 VIT: Vault protein in 99.9 4.3E-24 9.4E-29 187.9 15.1 111 81-197 2-118 (118)
5 cd01463 vWA_VGCC_like VWA Volt 99.9 2.2E-23 4.7E-28 200.2 19.6 165 323-489 11-189 (190)
6 smart00609 VIT Vault protein I 99.9 6.6E-24 1.4E-28 188.3 14.5 113 79-197 12-130 (130)
7 cd01466 vWA_C3HC4_type VWA C3H 99.9 7E-22 1.5E-26 183.3 18.4 153 326-487 1-155 (155)
8 cd01465 vWA_subgroup VWA subgr 99.9 1.2E-21 2.6E-26 184.3 18.6 166 327-495 2-169 (170)
9 cd01470 vWA_complement_factors 99.9 8.1E-21 1.7E-25 183.5 16.6 168 327-495 2-196 (198)
10 cd01456 vWA_ywmD_type VWA ywmD 99.9 1.8E-20 3.9E-25 182.3 18.6 165 322-488 17-202 (206)
11 PRK13685 hypothetical protein; 99.8 2.3E-18 5.1E-23 178.8 21.7 170 324-502 87-289 (326)
12 TIGR00868 hCaCC calcium-activa 99.8 2E-18 4.2E-23 194.2 22.2 161 322-492 301-466 (863)
13 cd01451 vWA_Magnesium_chelatas 99.8 2.9E-18 6.2E-23 162.8 18.0 156 328-491 3-169 (178)
14 cd01480 vWA_collagen_alpha_1-V 99.8 1.2E-18 2.6E-23 166.6 14.8 158 324-489 1-172 (186)
15 cd01467 vWA_BatA_type VWA BatA 99.8 1.1E-17 2.3E-22 159.1 20.2 161 325-491 2-179 (180)
16 TIGR02921 PEP_integral PEP-CTE 99.8 1.2E-17 2.7E-22 173.4 21.5 102 80-186 412-522 (952)
17 cd01464 vWA_subfamily VWA subf 99.8 3.5E-18 7.5E-23 162.0 15.0 141 325-477 3-159 (176)
18 cd01472 vWA_collagen von Wille 99.8 1.5E-17 3.2E-22 155.7 18.6 152 326-487 1-161 (164)
19 cd01474 vWA_ATR ATR (Anthrax T 99.8 1.9E-17 4E-22 158.3 18.5 173 324-504 3-182 (185)
20 cd01453 vWA_transcription_fact 99.8 1.7E-17 3.7E-22 157.8 17.8 161 326-497 4-176 (183)
21 PF13519 VWA_2: von Willebrand 99.8 1.4E-17 3E-22 156.1 16.5 163 327-498 1-171 (172)
22 cd01471 vWA_micronemal_protein 99.7 6E-17 1.3E-21 154.9 17.4 149 327-479 2-161 (186)
23 TIGR03436 acidobact_VWFA VWFA- 99.7 1.1E-16 2.5E-21 164.4 20.6 173 324-506 52-257 (296)
24 cd01475 vWA_Matrilin VWA_Matri 99.7 1E-16 2.2E-21 157.9 17.9 170 325-504 2-184 (224)
25 cd01477 vWA_F09G8-8_type VWA F 99.7 2.3E-16 4.9E-21 151.0 18.6 158 323-484 17-190 (193)
26 cd01469 vWA_integrins_alpha_su 99.7 2.6E-16 5.6E-21 149.3 17.9 159 327-492 2-174 (177)
27 cd01462 VWA_YIEM_type VWA YIEM 99.7 4.9E-16 1.1E-20 143.5 16.5 145 326-478 1-147 (152)
28 cd01482 vWA_collagen_alphaI-XI 99.7 9.8E-16 2.1E-20 143.4 17.7 147 327-483 2-157 (164)
29 cd01450 vWFA_subfamily_ECM Von 99.7 7.7E-16 1.7E-20 142.8 16.8 148 327-482 2-158 (161)
30 PTZ00441 sporozoite surface pr 99.7 1.4E-15 3E-20 162.8 20.6 180 324-507 41-234 (576)
31 cd01454 vWA_norD_type norD typ 99.7 5.8E-16 1.2E-20 146.5 15.8 141 327-468 2-155 (174)
32 PRK13406 bchD magnesium chelat 99.7 1.8E-15 3.9E-20 166.5 18.9 160 322-490 398-571 (584)
33 cd01473 vWA_CTRP CTRP for CS 99.7 5.5E-15 1.2E-19 141.7 19.9 172 327-503 2-190 (192)
34 PF00092 VWA: von Willebrand f 99.7 2E-15 4.3E-20 142.6 15.4 166 327-498 1-177 (178)
35 cd01476 VWA_integrin_invertebr 99.6 6.6E-15 1.4E-19 137.5 17.6 146 327-481 2-159 (163)
36 smart00327 VWA von Willebrand 99.6 2.2E-14 4.8E-19 135.0 18.2 154 325-485 1-164 (177)
37 cd01455 vWA_F11C1-5a_type Von 99.6 2.4E-14 5.1E-19 134.2 17.9 168 326-502 1-188 (191)
38 COG1240 ChlD Mg-chelatase subu 99.6 2E-14 4.4E-19 138.3 16.4 165 323-492 76-250 (261)
39 TIGR02031 BchD-ChlD magnesium 99.6 2.3E-14 5.1E-19 159.3 18.8 163 323-490 405-584 (589)
40 PF13757 VIT_2: Vault protein 99.6 1.6E-14 3.5E-19 114.4 10.7 69 79-152 9-77 (78)
41 cd00198 vWFA Von Willebrand fa 99.6 1.3E-13 2.8E-18 126.8 17.8 149 326-479 1-155 (161)
42 cd01481 vWA_collagen_alpha3-VI 99.5 3.4E-13 7.5E-18 126.1 18.4 145 326-480 1-157 (165)
43 COG4245 TerY Uncharacterized p 99.5 1E-13 2.2E-18 126.0 13.6 139 328-478 6-161 (207)
44 cd01457 vWA_ORF176_type VWA OR 99.5 1.8E-13 4E-18 132.2 15.4 147 325-478 2-165 (199)
45 KOG2353 L-type voltage-depende 99.5 9.4E-14 2E-18 159.5 15.4 185 321-510 221-419 (1104)
46 TIGR02442 Cob-chelat-sub cobal 99.5 6.2E-13 1.3E-17 149.6 18.8 156 323-486 463-632 (633)
47 cd01452 VWA_26S_proteasome_sub 99.3 7.1E-11 1.5E-15 111.6 18.6 144 327-479 5-161 (187)
48 PF10138 vWA-TerF-like: vWA fo 99.3 2E-10 4.3E-15 108.2 17.7 158 326-492 2-174 (200)
49 PRK10997 yieM hypothetical pro 99.2 2.3E-10 4.9E-15 122.3 17.0 144 322-473 320-465 (487)
50 COG2425 Uncharacterized protei 99.2 7.9E-11 1.7E-15 123.4 12.3 146 326-479 273-419 (437)
51 cd01460 vWA_midasin VWA_Midasi 99.2 6.1E-10 1.3E-14 110.8 17.9 169 324-501 59-257 (266)
52 cd01458 vWA_ku Ku70/Ku80 N-ter 99.0 4.2E-09 9.2E-14 103.3 15.1 140 327-467 3-174 (218)
53 PF11775 CobT_C: Cobalamin bio 99.0 9.9E-09 2.2E-13 97.5 14.7 171 324-503 11-216 (219)
54 PF05762 VWA_CoxE: VWA domain 98.8 1.2E-07 2.7E-12 93.0 14.2 129 323-462 55-186 (222)
55 TIGR01651 CobT cobaltochelatas 98.7 7.2E-08 1.6E-12 103.8 11.4 171 324-503 391-596 (600)
56 PF04056 Ssl1: Ssl1-like; Int 98.6 1E-06 2.2E-11 83.4 15.5 165 331-507 1-176 (193)
57 COG4867 Uncharacterized protei 98.6 1.4E-06 3.1E-11 88.7 15.9 159 323-497 461-643 (652)
58 PF09967 DUF2201: VWA-like dom 98.6 3.6E-07 7.8E-12 81.3 9.8 96 328-436 1-96 (126)
59 KOG3768 DEAD box RNA helicase 98.6 6.5E-07 1.4E-11 94.4 12.5 175 328-509 4-234 (888)
60 COG4548 NorD Nitric oxide redu 98.5 6.4E-07 1.4E-11 94.0 9.4 177 324-504 445-636 (637)
61 COG2304 Uncharacterized protei 98.4 1.3E-05 2.8E-10 85.8 17.5 169 322-493 34-205 (399)
62 cd01459 vWA_copine_like VWA Co 98.3 1.9E-05 4E-10 78.5 15.9 148 325-477 31-206 (254)
63 cd01468 trunk_domain trunk dom 98.3 5.1E-05 1.1E-09 75.5 17.5 162 324-489 2-224 (239)
64 KOG2807 RNA polymerase II tran 98.2 2.9E-05 6.3E-10 76.8 13.8 169 324-507 59-239 (378)
65 PF04811 Sec23_trunk: Sec23/Se 98.1 9.9E-05 2.1E-09 73.6 16.2 163 325-490 3-227 (243)
66 cd01479 Sec24-like Sec24-like: 98.0 0.00029 6.2E-09 70.3 17.8 158 325-487 3-219 (244)
67 PRK05325 hypothetical protein; 98.0 0.00017 3.7E-09 75.5 14.8 162 325-502 222-396 (401)
68 COG4547 CobT Cobalamin biosynt 97.9 5.4E-05 1.2E-09 78.3 10.3 166 326-502 414-616 (620)
69 cd01478 Sec23-like Sec23-like: 97.9 0.0011 2.4E-08 66.9 19.1 162 325-490 3-257 (267)
70 PLN00162 transport protein sec 97.7 0.0097 2.1E-07 68.8 26.0 176 323-502 122-392 (761)
71 PF04285 DUF444: Protein of un 97.7 0.00071 1.5E-08 71.6 14.7 162 325-502 246-418 (421)
72 PF06707 DUF1194: Protein of u 97.7 0.0032 7E-08 60.1 17.1 175 325-503 3-202 (205)
73 TIGR02877 spore_yhbH sporulati 97.7 0.0012 2.5E-08 68.2 14.8 159 324-499 201-370 (371)
74 COG3552 CoxE Protein containin 97.5 0.00043 9.3E-09 70.5 9.7 108 323-437 216-326 (395)
75 PF11443 DUF2828: Domain of un 97.5 0.00052 1.1E-08 74.7 10.0 104 326-435 341-449 (534)
76 KOG1985 Vesicle coat complex C 97.5 0.0051 1.1E-07 68.6 17.5 178 309-489 278-511 (887)
77 PTZ00395 Sec24-related protein 97.5 0.03 6.6E-07 65.9 24.1 225 322-549 949-1260(1560)
78 KOG1327 Copine [Signal transdu 97.4 0.0033 7.1E-08 67.7 14.6 150 324-478 284-464 (529)
79 smart00187 INB Integrin beta s 97.3 0.011 2.5E-07 62.2 17.6 187 308-506 87-341 (423)
80 PF03731 Ku_N: Ku70/Ku80 N-ter 97.3 0.0014 3E-08 64.4 9.4 107 328-435 2-141 (224)
81 PF07002 Copine: Copine; Inte 97.2 0.0056 1.2E-07 55.7 11.7 120 341-464 11-146 (146)
82 KOG2884 26S proteasome regulat 96.8 0.07 1.5E-06 50.6 15.8 134 326-468 4-149 (259)
83 TIGR00627 tfb4 transcription f 96.8 0.05 1.1E-06 54.9 15.4 167 326-494 3-215 (279)
84 COG5151 SSL1 RNA polymerase II 96.7 0.023 5E-07 56.3 11.9 170 325-508 87-271 (421)
85 KOG1984 Vesicle coat complex C 96.6 0.18 4E-06 56.9 19.8 224 323-550 415-712 (1007)
86 TIGR00578 ku70 ATP-dependent D 96.5 0.05 1.1E-06 61.1 14.6 109 325-434 10-150 (584)
87 PF03850 Tfb4: Transcription f 96.3 0.3 6.4E-06 49.5 17.9 166 327-494 3-213 (276)
88 COG5148 RPN10 26S proteasome r 96.3 0.16 3.6E-06 46.9 14.3 141 326-475 4-156 (243)
89 COG2718 Uncharacterized conser 96.1 0.047 1E-06 56.1 10.8 161 326-502 247-417 (423)
90 COG5028 Vesicle coat complex C 95.9 0.56 1.2E-05 52.5 18.3 173 312-488 263-486 (861)
91 PF11265 Med25_VWA: Mediator c 95.8 0.096 2.1E-06 50.9 11.0 110 323-434 11-150 (226)
92 COG3864 Uncharacterized protei 95.7 0.04 8.6E-07 55.0 8.1 93 327-436 263-356 (396)
93 PF14415 DUF4424: Domain of un 95.4 0.6 1.3E-05 46.6 15.2 47 101-150 2-66 (253)
94 KOG4465 Uncharacterized conser 95.4 0.1 2.2E-06 53.0 9.5 135 321-464 423-562 (598)
95 COG1721 Uncharacterized conser 94.6 0.31 6.7E-06 52.6 11.5 104 325-434 224-334 (416)
96 KOG1986 Vesicle coat complex C 93.0 10 0.00022 42.5 19.4 174 324-501 120-378 (745)
97 COG5242 TFB4 RNA polymerase II 92.1 12 0.00025 36.1 16.7 147 343-493 43-219 (296)
98 PF00362 Integrin_beta: Integr 91.1 0.64 1.4E-05 50.1 7.6 188 308-507 90-345 (426)
99 KOG2487 RNA polymerase II tran 83.8 45 0.00097 33.3 14.4 165 324-492 22-231 (314)
100 COG5271 MDN1 AAA ATPase contai 80.9 18 0.00039 45.2 12.3 120 326-449 4393-4522(4600)
101 KOG1226 Integrin beta subunit 80.0 6.4 0.00014 44.5 8.1 61 306-372 118-181 (783)
102 KOG2326 DNA-binding subunit of 73.4 68 0.0015 35.6 13.3 134 326-464 5-165 (669)
103 PF06415 iPGM_N: BPG-independe 72.8 29 0.00063 33.9 9.6 75 407-482 14-97 (223)
104 PF04597 Ribophorin_I: Ribopho 58.7 87 0.0019 34.0 11.0 83 99-197 17-103 (432)
105 COG5047 SEC23 Vesicle coat com 58.4 29 0.00062 38.2 7.0 50 323-374 120-169 (755)
106 PRK05434 phosphoglyceromutase; 47.5 1.1E+02 0.0024 33.8 9.7 62 406-468 95-157 (507)
107 PF01882 DUF58: Protein of unk 45.6 27 0.00058 28.2 3.5 40 325-364 40-85 (86)
108 KOG1924 RhoA GTPase effector D 40.2 40 0.00086 38.5 4.7 10 30-39 544-553 (1102)
109 KOG0070 GTP-binding ADP-ribosy 39.3 1.8E+02 0.004 27.4 8.3 44 326-373 86-129 (181)
110 TIGR01307 pgm_bpd_ind 2,3-bisp 37.5 2.3E+02 0.0051 31.3 10.1 62 406-468 91-153 (501)
111 KOG2291 Oligosaccharyltransfer 36.2 1.8E+02 0.0039 32.1 8.6 94 89-196 36-132 (602)
112 cd02004 TPP_BZL_OCoD_HPCL Thia 34.5 2.8E+02 0.0061 25.4 9.1 41 472-513 131-171 (172)
113 PF10633 NPCBM_assoc: NPCBM-as 30.9 93 0.002 24.6 4.5 31 181-211 44-74 (78)
114 COG3364 Zn-ribbon containing p 30.3 54 0.0012 27.6 2.9 38 170-214 66-103 (112)
115 PF08496 Peptidase_S49_N: Pept 29.4 1E+02 0.0022 28.4 4.9 42 325-366 96-137 (155)
116 PF00733 Asn_synthase: Asparag 26.9 2.4E+02 0.0052 27.3 7.7 94 405-506 2-98 (255)
117 KOG0071 GTP-binding ADP-ribosy 26.5 1.1E+02 0.0024 27.7 4.4 29 325-356 85-113 (180)
118 TIGR03820 lys_2_3_AblA lysine- 26.5 7.5E+02 0.016 26.8 11.5 48 479-526 288-335 (417)
119 PF12690 BsuPI: Intracellular 26.0 1.9E+02 0.0041 23.4 5.4 35 173-208 44-80 (82)
120 PLN02538 2,3-bisphosphoglycera 25.4 6.1E+02 0.013 28.5 10.8 59 407-468 115-174 (558)
121 PF00025 Arf: ADP-ribosylation 24.8 3.7E+02 0.008 24.7 8.1 28 326-356 83-110 (175)
122 PF07705 CARDB: CARDB; InterP 21.9 1.4E+02 0.003 24.2 4.2 30 178-210 52-81 (101)
123 cd02001 TPP_ComE_PpyrDC Thiami 21.2 5.4E+02 0.012 23.4 8.2 42 472-514 114-155 (157)
124 PF07610 DUF1573: Protein of u 20.9 66 0.0014 22.7 1.6 14 182-195 32-45 (45)
No 1
>TIGR03788 marine_srt_targ marine proteobacterial sortase target protein. Members of this protein family are restricted to the Proteobacteria. Each contains a C-terminal sortase-recognition motif, transmembrane domain, and basic residues cluster at the the C-terminus, and is encoded adjacent to a sortase gene. This protein is frequently the only sortase target in its genome, which is as unusual its occurrence in Gram-negative rather than Gram-positive genomes. Many bacteria with this system are marine. In addition to the LPXTG signal, members carry a vault protein inter-alpha-trypsin inhibitor domain (pfam08487) and a von Willebrand factor type A domain (pfam00092).
Probab=100.00 E-value=1.5e-73 Score=636.79 Aligned_cols=486 Identities=22% Similarity=0.365 Sum_probs=404.6
Q ss_pred ceeEEEEEEEEeeeEEEEEEEEEEecccCCCceeeEEEEeecCCCeeEEEEEEEECCEEEEEEEEehHhhhhhhhhccc-
Q 007718 86 MHGVEMEVDCCLDTAFVAFNGSWRVHCIMAGRQCDCTIAVPLGERGSLLGVEVEIDGRSYQSKLISLDDAEYKENVGKS- 164 (591)
Q Consensus 86 ~~~v~v~V~~~~~~a~v~~~q~f~n~~~~~~~~~e~~y~fPL~~~a~V~~f~~~i~gk~i~~~v~~k~~a~~~~~~~~~- 164 (591)
+++|+++|.|.+ |+|+++|+|.| ++++++||.|+||||++|+|++|+|+||||+|+|+|+||++|++.|+.+++
T Consensus 2 ~~~v~~~V~g~~--A~v~v~q~f~N---~~~~~~E~~y~fPLp~~aaV~~f~~~i~~r~i~g~v~eKe~A~~~Ye~a~~~ 76 (596)
T TIGR03788 2 DTDANITVTGLI--ARTEVTQTFRN---PSQFWVEGRYVFPLPENAAVDSLTMHIGERVIVGQIMPKAAARAIYEQAKAE 76 (596)
T ss_pred CceEEEEEEcce--EEEEEEEEEEC---CCCCcEEEEEEeeCCCCcEEEEEEEEECCEEEEEEEeeHHHHHHHHHHHHHh
Confidence 578899998884 77999999999 788999999999999999999999999999999999999999986655555
Q ss_pred cCCccce---ecCceEEEcCCCCCCCEEEEEEEEEEeeecccCeEEEEEeeec-ceeccCCCC----------------C
Q 007718 165 KGDGRYL---KGQIYTLRIPQVDGGSTLSIKVNWSQKLTYEEGQFCLSVPFTF-PAYVIPLGR----------------K 224 (591)
Q Consensus 165 ~~~~~ll---~~~~F~~~v~~i~~g~~v~I~i~y~q~L~~~~g~~~~~lp~~~-P~~v~p~~~----------------~ 224 (591)
+++++|+ ++|+|+++|||||||++++|+|+|+|+|.+++|.|++++|+++ |+|..+... .
T Consensus 77 G~~a~Lleq~~~~~F~~~V~nIpp~~~v~i~l~Y~q~L~~~~g~~~~~lP~~~~pry~~~~~~~~~~~~~~~~~~~~~~~ 156 (596)
T TIGR03788 77 GKKAALVEQQRPNLFTNKVANIGPGETVVVTIEYQQPVSYSSGTFSLRLPLTVTPRYIPGSTVNTVTDVNNSGWAIPTTQ 156 (596)
T ss_pred ccceeeeecccCCceeEEeeccCCCCEEEEEEEEEEEeeecCCEEEEEeeeeecCCccCCcccccccccccccccccccc
Confidence 5667787 6999999999999999999999999999999999998877765 655421100 0
Q ss_pred C-------------------CCcceEEEEEEcCCceeeeeccCCccceeeecccceEEEeecccccccCCCccEEEEEec
Q 007718 225 I-------------------PKSEKIILNVNSGVSEQIVGKCSSHPLKELSREVGKLSFSYEAEVKRWSNSDFKFSYTVA 285 (591)
Q Consensus 225 ~-------------------~~~~~i~~~v~~~~~~~i~i~s~sh~l~~~~~~~~~~~~~~~~~~~~~~~~Df~l~~~~~ 285 (591)
. .....++++++.+.+. ..+.|++|++++.+.......++++.. ..++++||+|.|.+.
T Consensus 157 ~~~~~~i~~~~~~~~~~~~~~~~~~~~v~i~~~~~i-~~i~s~~h~i~~~~~~~~~~~v~l~~~-~~~~d~Df~l~~~~~ 234 (596)
T TIGR03788 157 VPDADKISAPRVLDPDDDAPSSQASINVDLNAGLPL-DSITSPSHPIQIEQQGQSGYTISLAQG-QVIADRDFVLTWRPA 234 (596)
T ss_pred cccccccCCccccCcccCCCCcceEEEEEecCCCcc-ceeeCCCCceEeecCCCceEEEEeCCC-CcCCCCCEEEEEEeC
Confidence 0 0113344444444432 258899999988766655566666542 368999999999997
Q ss_pred cCCCccceEeeCCCCCCCCCcceEEEEEecCCC-CCCCccCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcCCCCeEE
Q 007718 286 STDLFGGVLLQSPSLHDFDQRQIFCLYLFPGKS-QSRKVFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFN 364 (591)
Q Consensus 286 ~~~~~~~v~~~~~~~~~~d~~~~f~~~~~P~~~-~~~~~~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~~~d~f~ 364 (591)
..+.. ..++.. +..++.+||++++.|+.. ......|++++||||+||||.|.+++.+|+++..++..|+++|+|+
T Consensus 235 ~~~~p-~~~~~~---~~~~~~~y~~~~~~pp~~~~~~~~~p~~vvfvlD~SgSM~g~~i~~ak~al~~~l~~L~~~d~~~ 310 (596)
T TIGR03788 235 QGEAP-SAALFR---EQIGGERYGLAMVMPPTEAAVAQVLPRELVFVIDTSGSMAGESIEQAKSALLLALDQLRPGDRFN 310 (596)
T ss_pred CCCCc-eEEEEE---EccCCCcEEEEEEeCCCccccccCCCceEEEEEECCCCCCCccHHHHHHHHHHHHHhCCCCCEEE
Confidence 65533 333321 112455789888988863 2345788999999999999999999999999999999999999999
Q ss_pred EEEeCCceEeeecCcccCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHhhhcC-CCCccEEEEEecCCCCChhhHHHH
Q 007718 365 IIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAGGGTNILLPLKQAIKLLSDT-SESIPLIFLITDGTVGDERGICNE 443 (591)
Q Consensus 365 Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~~~GgT~l~~aL~~a~~~l~~~-~~~~~~IillTDG~~~~~~~i~~~ 443 (591)
|+.|++++..+.+.....+.++++.+.++|+++.++|||+++.||+.|++..... .+..+.|||||||.++++..+++.
T Consensus 311 ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~a~GgT~l~~aL~~a~~~~~~~~~~~~~~iillTDG~~~~~~~~~~~ 390 (596)
T TIGR03788 311 IIQFDSDVTLLFPVPVPATAHNLARARQFVAGLQADGGTEMAGALSAALRDDGPESSGALRQVVFLTDGAVGNEDALFQL 390 (596)
T ss_pred EEEECCcceEeccccccCCHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHhhcccCCCceeEEEEEeCCCCCCHHHHHHH
Confidence 9999999998888777889999999999999999999999999999999874322 345678999999998887777777
Q ss_pred HHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHhCCCEEEEcCCCCchHHHHHHHHHHhccceEEeEEEEecCCCccee
Q 007718 444 IKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYYDSAYDPGSVDYRIRRFFTAASSVFLTNMTLETSKHLNSLE 523 (591)
Q Consensus 444 v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~LA~~~~G~~~~v~~~~~l~~~~~~~~~~~~~p~~~~v~l~~~~~~~~~~ 523 (591)
++... .+.+||+||+|+++|..+|+.||+.|+|.|.++.+.+++..++.+++.++.+|+++|++++|.. ....+
T Consensus 391 ~~~~~-----~~~ri~tvGiG~~~n~~lL~~lA~~g~G~~~~i~~~~~~~~~~~~~l~~~~~p~l~~v~v~~~~-~~~~~ 464 (596)
T TIGR03788 391 IRTKL-----GDSRLFTVGIGSAPNSYFMRKAAQFGRGSFTFIGSTDEVQRKMSQLFAKLEQPALTDIALTFDN-GNAAD 464 (596)
T ss_pred HHHhc-----CCceEEEEEeCCCcCHHHHHHHHHcCCCEEEECCCHHHHHHHHHHHHHhhcCeEEEEEEEEEcC-Cccce
Confidence 65432 2479999999999999999999999999999999999999999999999999999999999953 45679
Q ss_pred eeCCCCCCcCCCCeEEEEEEEeCCCCceEEEEEEeCCcceEEEEEecccC-CCCChhHhHHHHHhhhh
Q 007718 524 LFPSHIPDFCLECPLIVSGRYSGNFGDSVQVSGTMADTSNFIIELKAQNA-KDIPLDRVMSQNLLLLV 590 (591)
Q Consensus 524 v~P~~i~~l~~g~~l~v~g~~~~~~~~~v~l~g~~~~~~~~~~~l~~~~~-~~~~l~~lwAr~~I~~L 590 (591)
++|..+|+||.|++++|+||+ +..+++++++|..+++ .|+.++++... .+..|||||||++|++|
T Consensus 465 v~P~~~p~L~~g~~l~v~g~~-~~~~~~i~v~g~~~~~-~~~~~~~~~~~~~~~~l~~lwA~~~I~~L 530 (596)
T TIGR03788 465 VYPSPIPDLYRGEPLQIAIKL-QQAAGELQLTGRTGSQ-PWSQQLDLDSAAPGKGIDKLWARRKIDSL 530 (596)
T ss_pred eccCCCccccCCCEEEEEEEe-cCCCCeEEEEEEcCCc-eEEEEEecCCCCCcchHHHHHHHHHHHHH
Confidence 999999999999999999997 4568999999999887 58999988753 45679999999999987
No 2
>PF13768 VWA_3: von Willebrand factor type A domain
Probab=99.94 E-value=1e-25 Score=209.09 Aligned_cols=153 Identities=39% Similarity=0.547 Sum_probs=137.1
Q ss_pred ceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcCCCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCCC-CCCCc
Q 007718 326 KDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVA-GGGTN 404 (591)
Q Consensus 326 ~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~~-~GgT~ 404 (591)
.+++||||+|+||.|.+ +.+|+++..++++|+++|+|||+.|++++..|.+...+++.++++++.+||+++.+ .|+|+
T Consensus 1 ~~vvilvD~S~Sm~g~~-~~~k~al~~~l~~L~~~d~fnii~f~~~~~~~~~~~~~~~~~~~~~a~~~I~~~~~~~G~t~ 79 (155)
T PF13768_consen 1 ADVVILVDTSGSMSGEK-ELVKDALRAILRSLPPGDRFNIIAFGSSVRPLFPGLVPATEENRQEALQWIKSLEANSGGTD 79 (155)
T ss_pred CeEEEEEeCCCCCCCcH-HHHHHHHHHHHHhCCCCCEEEEEEeCCEeeEcchhHHHHhHHHHHHHHHHHHHhcccCCCcc
Confidence 37999999999999988 99999999999999999999999999999988888889999999999999999999 79999
Q ss_pred hHHHHHHHHHhhhcCCCCccEEEEEecCCC-CChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHhCCCEE
Q 007718 405 ILLPLKQAIKLLSDTSESIPLIFLITDGTV-GDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYY 483 (591)
Q Consensus 405 l~~aL~~a~~~l~~~~~~~~~IillTDG~~-~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~LA~~~~G~~ 483 (591)
+..||+.|+..+ ..++..+.|+|+|||.+ +.+..+++.+++. ..+++||+||+|..++..+|+.||+.++|.|
T Consensus 80 l~~aL~~a~~~~-~~~~~~~~IilltDG~~~~~~~~i~~~v~~~-----~~~~~i~~~~~g~~~~~~~L~~LA~~~~G~~ 153 (155)
T PF13768_consen 80 LLAALRAALALL-QRPGCVRAIILLTDGQPVSGEEEILDLVRRA-----RGHIRIFTFGIGSDADADFLRELARATGGSF 153 (155)
T ss_pred HHHHHHHHHHhc-ccCCCccEEEEEEeccCCCCHHHHHHHHHhc-----CCCceEEEEEECChhHHHHHHHHHHcCCCEE
Confidence 999999999876 33567889999999996 5555666666543 2459999999999999999999999999998
Q ss_pred EE
Q 007718 484 DS 485 (591)
Q Consensus 484 ~~ 485 (591)
.+
T Consensus 154 ~f 155 (155)
T PF13768_consen 154 HF 155 (155)
T ss_pred EC
Confidence 74
No 3
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin). Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix.
Probab=99.93 E-value=2e-24 Score=203.40 Aligned_cols=170 Identities=39% Similarity=0.598 Sum_probs=148.7
Q ss_pred cCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcCCCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCCCCCCC
Q 007718 324 FRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAGGGT 403 (591)
Q Consensus 324 ~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~~~GgT 403 (591)
.|++++||||+||||.|.+++.+++++..++..++++++|+|+.|+++...+.+.....+..++.++.++++.+.++|+|
T Consensus 1 ~~~~v~~vlD~S~SM~~~~~~~~~~al~~~l~~l~~~~~~~l~~Fs~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~T 80 (171)
T cd01461 1 LPKEVVFVIDTSGSMSGTKIEQTKEALLTALKDLPPGDYFNIIGFSDTVEEFSPSSVSATAENVAAAIEYVNRLQALGGT 80 (171)
T ss_pred CCceEEEEEECCCCCCChhHHHHHHHHHHHHHhCCCCCEEEEEEeCCCceeecCcceeCCHHHHHHHHHHHHhcCCCCCc
Confidence 37899999999999999999999999999999999999999999999988776555556778889999999999999999
Q ss_pred chHHHHHHHHHhhhcCCCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHhCCCEE
Q 007718 404 NILLPLKQAIKLLSDTSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYY 483 (591)
Q Consensus 404 ~l~~aL~~a~~~l~~~~~~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~LA~~~~G~~ 483 (591)
++..+|..+++.+...++..+.||++|||..++...+.+.+++.. +.+++||+||+|...+..+|+.||+.++|.|
T Consensus 81 ~l~~al~~a~~~l~~~~~~~~~iillTDG~~~~~~~~~~~~~~~~----~~~i~i~~i~~g~~~~~~~l~~ia~~~gG~~ 156 (171)
T cd01461 81 NMNDALEAALELLNSSPGSVPQIILLTDGEVTNESQILKNVREAL----SGRIRLFTFGIGSDVNTYLLERLAREGRGIA 156 (171)
T ss_pred CHHHHHHHHHHhhccCCCCccEEEEEeCCCCCCHHHHHHHHHHhc----CCCceEEEEEeCCccCHHHHHHHHHcCCCeE
Confidence 999999999999865456678999999999877666666665542 2368999999999999999999999999999
Q ss_pred EEcCCCCchHHHHH
Q 007718 484 DSAYDPGSVDYRIR 497 (591)
Q Consensus 484 ~~v~~~~~l~~~~~ 497 (591)
.++.+.+++.+++.
T Consensus 157 ~~~~~~~~~~~~~~ 170 (171)
T cd01461 157 RRIYETDDIESQLL 170 (171)
T ss_pred EEecChHHHHHHhc
Confidence 99999999887764
No 4
>PF08487 VIT: Vault protein inter-alpha-trypsin domain; InterPro: IPR013694 Inter-alpha-trypsin inhibitors (ITIs) consist of one light chain and a variable set of heavy chains. ITIs play a role in extracellular matrix (ECM) stabilisation and tumour metastasis as well as in plasma protease inhibition []. The vault protein inter-alpha-trypsin (VIT) domain described here is found to the N terminus of a von Willebrand factor type A domain (IPR002035 from INTERPRO) in ITI heavy chains (ITIHs) and their precursors.
Probab=99.92 E-value=4.3e-24 Score=187.90 Aligned_cols=111 Identities=14% Similarity=0.260 Sum_probs=99.8
Q ss_pred cccccceeEEEEEEEEeeeEEEEEEEEEEecccCCCceeeEEEEeecCCCeeEEEEEEEECCEEEEEEEEehHhhhhhhh
Q 007718 81 LIPLHMHGVEMEVDCCLDTAFVAFNGSWRVHCIMAGRQCDCTIAVPLGERGSLLGVEVEIDGRSYQSKLISLDDAEYKEN 160 (591)
Q Consensus 81 ~~pL~~~~v~v~V~~~~~~a~v~~~q~f~n~~~~~~~~~e~~y~fPL~~~a~V~~f~~~i~gk~i~~~v~~k~~a~~~~~ 160 (591)
.+||++.+|+++|.+. .|+|+++|+|.| ++++++|+.|.||||++|+|++|+|+||||.|.|+|+||++|++.|+
T Consensus 2 ~~~l~s~~v~~~I~~~--~a~t~v~q~f~N---~~~~~~E~~y~fpLp~~A~i~~f~~~i~g~~i~g~v~ek~~A~~~y~ 76 (118)
T PF08487_consen 2 QVPLKSVHVKVTIIDR--FARTTVTQTFEN---PSSEPLEAVYSFPLPEGAAISGFSMWIGGRTIEGEVKEKEEAKQEYE 76 (118)
T ss_pred CceEEEEEEEEEEEcc--EEEEEEEEEEEC---CCCCcEEEEEEeECCCCeEEEEEEEEECCEEEEEEEecHHHHHHHHH
Confidence 4789999999999888 577999999999 68899999999999999999999999999999999999999998666
Q ss_pred hcc-ccCCccce---ecCc--eEEEcCCCCCCCEEEEEEEEEE
Q 007718 161 VGK-SKGDGRYL---KGQI--YTLRIPQVDGGSTLSIKVNWSQ 197 (591)
Q Consensus 161 ~~~-~~~~~~ll---~~~~--F~~~v~~i~~g~~v~I~i~y~q 197 (591)
.++ ++.+++|| +++. |+++| |||||++++|+|+|+|
T Consensus 77 ~a~~~g~~a~lle~~~~~~~~F~~~v-ni~p~~~v~i~l~Y~e 118 (118)
T PF08487_consen 77 EAVAQGKSAALLEQSDPNVEVFTVSV-NIPPNEEVTIELTYVE 118 (118)
T ss_pred HHHHcCCCchhhcccCCCCcEEEEEE-EeCCCCEEEEEEEEEC
Confidence 655 45677787 5677 99999 9999999999999985
No 5
>cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The alpha 2 and delta subunits result from proteolytic processing of a single gene product and carries at its N-terminus the VWA and cache domains, The alpha 2 delta gene family has orthologues in D. melanogaster and C. elegans but none have been detected in aither A. thaliana or yeast. The exact biochemical function of the VWA domain is not known but the alpha 2 delta complex has been shown to regulate various functional properties of the channel complex.
Probab=99.91 E-value=2.2e-23 Score=200.16 Aligned_cols=165 Identities=30% Similarity=0.367 Sum_probs=136.8
Q ss_pred ccCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcCCCCeEEEEEeCCceEeeecC----cccCCHHHHHHHHHHHhcCC
Q 007718 323 VFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSS----MKLASQGTIINATQWLSSLV 398 (591)
Q Consensus 323 ~~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~~~d~f~Ii~F~~~~~~~~~~----~~~~~~~~~~~a~~~i~~l~ 398 (591)
..|++++||||+||||.+.+++.+|+++..+++.|+++|+|+|+.|++++..+.+. ....+..+.+.+.++|.++.
T Consensus 11 ~~p~~vv~llD~SgSM~~~~l~~ak~~~~~ll~~l~~~d~v~lv~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 90 (190)
T cd01463 11 TSPKDIVILLDVSGSMTGQRLHLAKQTVSSILDTLSDNDFFNIITFSNEVNPVVPCFNDTLVQATTSNKKVLKEALDMLE 90 (190)
T ss_pred cCCceEEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCCCEEEEEEeCCCeeEEeeecccceEecCHHHHHHHHHHHhhCC
Confidence 46899999999999999999999999999999999999999999999998876543 12345678888999999999
Q ss_pred CCCCCchHHHHHHHHHhhhcC---------CCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCC-C
Q 007718 399 AGGGTNILLPLKQAIKLLSDT---------SESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYC-N 468 (591)
Q Consensus 399 ~~GgT~l~~aL~~a~~~l~~~---------~~~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~-~ 468 (591)
++|+|++..||+.|++.+... +...+.|||||||.+++...++...... ......++||+||+|.+. |
T Consensus 91 ~~G~T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~--~~~~~~v~i~tigiG~~~~d 168 (190)
T cd01463 91 AKGIANYTKALEFAFSLLLKNLQSNHSGSRSQCNQAIMLITDGVPENYKEIFDKYNWD--KNSEIPVRVFTYLIGREVTD 168 (190)
T ss_pred CCCcchHHHHHHHHHHHHHHhhhcccccccCCceeEEEEEeCCCCCcHhHHHHHhccc--ccCCCcEEEEEEecCCcccc
Confidence 999999999999999988651 1335689999999998765554433221 112346899999999986 8
Q ss_pred HHHHHHHHHhCCCEEEEcCCC
Q 007718 469 HYFLQILAQIGRGYYDSAYDP 489 (591)
Q Consensus 469 ~~lL~~LA~~~~G~~~~v~~~ 489 (591)
..+|+.||..++|.|+++.+.
T Consensus 169 ~~~L~~lA~~~~G~~~~i~~~ 189 (190)
T cd01463 169 RREIQWMACENKGYYSHIQSL 189 (190)
T ss_pred chHHHHHHhhcCCeEEEcccC
Confidence 999999999999999998764
No 6
>smart00609 VIT Vault protein Inter-alpha-Trypsin domain.
Probab=99.91 E-value=6.6e-24 Score=188.29 Aligned_cols=113 Identities=16% Similarity=0.199 Sum_probs=101.5
Q ss_pred CccccccceeEEEEEEEEeeeEEEEEEEEEEecccCCCceeeEEEEeecCCCeeEEEEEEEECCEEEEEEEEehHhhhhh
Q 007718 79 PALIPLHMHGVEMEVDCCLDTAFVAFNGSWRVHCIMAGRQCDCTIAVPLGERGSLLGVEVEIDGRSYQSKLISLDDAEYK 158 (591)
Q Consensus 79 ~~~~pL~~~~v~v~V~~~~~~a~v~~~q~f~n~~~~~~~~~e~~y~fPL~~~a~V~~f~~~i~gk~i~~~v~~k~~a~~~ 158 (591)
...+||++.+|+++|.|. +|+|+++|+|.| +++...|+.|.||||++|+|++|+|+||||+|.|+|+||++|++.
T Consensus 12 ~~~~pL~s~~v~~~I~~~--~a~t~vtq~f~N---~~~~~~e~~~~~~lp~~A~v~~~~~~i~~r~i~g~vkeK~~Ar~~ 86 (130)
T smart00609 12 VNGVPLYSLKVNSKVTSR--FAHTVVTSRVVN---RAVPAQEVTFDVELPKTAFISNFAMTIDGKTYVGEIKEKEVAQKQ 86 (130)
T ss_pred CCccceEEEEEEEEEECC--EEEEEEEEEEEC---CCCCceEEEEEcCCCCCcEEEeEEEEECCEEEEEEEeeHHHHHHH
Confidence 457999999999999888 577999999999 568889999999999999999999999999999999999999986
Q ss_pred hhhcc-ccCCccce---ec--CceEEEcCCCCCCCEEEEEEEEEE
Q 007718 159 ENVGK-SKGDGRYL---KG--QIYTLRIPQVDGGSTLSIKVNWSQ 197 (591)
Q Consensus 159 ~~~~~-~~~~~~ll---~~--~~F~~~v~~i~~g~~v~I~i~y~q 197 (591)
|+.++ ++++++|+ ++ |+|+++| |||||++++|+|+|.|
T Consensus 87 Ye~A~~~G~~a~L~eq~~~~~~~F~~~V-NIppg~~v~v~l~Y~e 130 (130)
T smart00609 87 YEKAVSQGKTAGLVRASGRSMEQFTVSV-NVAPGSKVTFELTYEE 130 (130)
T ss_pred HHHHHHcCCCeEEEEecCCccCcEEEEE-EeCCCCEEEEEEEEEC
Confidence 66665 45677788 56 9999999 9999999999999985
No 7
>cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most,
Probab=99.89 E-value=7e-22 Score=183.26 Aligned_cols=153 Identities=30% Similarity=0.421 Sum_probs=128.0
Q ss_pred ceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcCCCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCCCCCCCch
Q 007718 326 KDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAGGGTNI 405 (591)
Q Consensus 326 ~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~~~GgT~l 405 (591)
.+++||||+||||.+.+++.+|+++..+++.|+++++++|+.|+++++.+.+. .+.+..+...+.++++.+.++|+|++
T Consensus 1 ~~v~~vlD~S~SM~~~rl~~ak~a~~~l~~~l~~~~~~~li~F~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~g~T~~ 79 (155)
T cd01466 1 VDLVAVLDVSGSMAGDKLQLVKHALRFVISSLGDADRLSIVTFSTSAKRLSPL-RRMTAKGKRSAKRVVDGLQAGGGTNV 79 (155)
T ss_pred CcEEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcceEEEEEecCCccccCCC-cccCHHHHHHHHHHHHhccCCCCccH
Confidence 37899999999999999999999999999999999999999999998776553 34556677788888999999999999
Q ss_pred HHHHHHHHHhhhcC--CCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHhCCCEE
Q 007718 406 LLPLKQAIKLLSDT--SESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYY 483 (591)
Q Consensus 406 ~~aL~~a~~~l~~~--~~~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~LA~~~~G~~ 483 (591)
+.||+.+.+.+... .+..+.|||+|||.++.... . .. ....++.+|+||+|...+..+|+.||+.++|.|
T Consensus 80 ~~al~~a~~~~~~~~~~~~~~~iillTDG~~~~~~~---~-~~----~~~~~v~v~~igig~~~~~~~l~~iA~~t~G~~ 151 (155)
T cd01466 80 VGGLKKALKVLGDRRQKNPVASIMLLSDGQDNHGAV---V-LR----ADNAPIPIHTFGLGASHDPALLAFIAEITGGTF 151 (155)
T ss_pred HHHHHHHHHHHhhcccCCCceEEEEEcCCCCCcchh---h-hc----ccCCCceEEEEecCCCCCHHHHHHHHhccCceE
Confidence 99999999998643 23456899999999876411 1 11 123469999999999999999999999999999
Q ss_pred EEcC
Q 007718 484 DSAY 487 (591)
Q Consensus 484 ~~v~ 487 (591)
+++.
T Consensus 152 ~~~~ 155 (155)
T cd01466 152 SYVK 155 (155)
T ss_pred EEeC
Confidence 9873
No 8
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if n
Probab=99.88 E-value=1.2e-21 Score=184.29 Aligned_cols=166 Identities=22% Similarity=0.297 Sum_probs=133.2
Q ss_pred eEEEEEeCCcCCCcchHHHHHHHHHHHHHhcCCCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCCCCCCCchH
Q 007718 327 DVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAGGGTNIL 406 (591)
Q Consensus 327 ~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~~~GgT~l~ 406 (591)
+++||+|+||||.+.+++.+|+++..++..|+++++++++.|+++...+.+.... .+...+.+.++.+.++|+|++.
T Consensus 2 ~~~~vlD~S~SM~~~~~~~~k~a~~~~~~~l~~~~~v~li~f~~~~~~~~~~~~~---~~~~~l~~~l~~~~~~g~T~~~ 78 (170)
T cd01465 2 NLVFVIDRSGSMDGPKLPLVKSALKLLVDQLRPDDRLAIVTYDGAAETVLPATPV---RDKAAILAAIDRLTAGGSTAGG 78 (170)
T ss_pred cEEEEEECCCCCCChhHHHHHHHHHHHHHhCCCCCEEEEEEecCCccEEecCccc---chHHHHHHHHHcCCCCCCCCHH
Confidence 6899999999999989999999999999999999999999999998776543222 2335566778888899999999
Q ss_pred HHHHHHHHhhhcCC--CCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHhCCCEEE
Q 007718 407 LPLKQAIKLLSDTS--ESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYYD 484 (591)
Q Consensus 407 ~aL~~a~~~l~~~~--~~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~LA~~~~G~~~ 484 (591)
.+|+.|++.+.... +..+.|||+|||.++......+.+++.+......+++||+||+|.+.+..+|+.||+.++|.|+
T Consensus 79 ~al~~a~~~~~~~~~~~~~~~ivl~TDG~~~~~~~~~~~~~~~~~~~~~~~v~i~~i~~g~~~~~~~l~~ia~~~~g~~~ 158 (170)
T cd01465 79 AGIQLGYQEAQKHFVPGGVNRILLATDGDFNVGETDPDELARLVAQKRESGITLSTLGFGDNYNEDLMEAIADAGNGNTA 158 (170)
T ss_pred HHHHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEEeCCCcCHHHHHHHHhcCCceEE
Confidence 99999999886532 2336899999999875433333333333333345699999999999999999999999999999
Q ss_pred EcCCCCchHHH
Q 007718 485 SAYDPGSVDYR 495 (591)
Q Consensus 485 ~v~~~~~l~~~ 495 (591)
++.+.+++++.
T Consensus 159 ~~~~~~~~~~~ 169 (170)
T cd01465 159 YIDNLAEARKV 169 (170)
T ss_pred EeCCHHHHHhh
Confidence 99988877643
No 9
>cd01470 vWA_complement_factors Complement factors B and C2 are two critical proteases for complement activation. They both contain three CCP or Sushi domains, a trypsin-type serine protease domain and a single VWA domain with a conserved metal ion dependent adhesion site referred commonly as the MIDAS motif. Orthologues of these molecules are found from echinoderms to chordates. During complement activation, the CCP domains are cleaved off, resulting in the formation of an active protease that cleaves and activates complement C3. Complement C2 is in the classical pathway and complement B is in the alternative pathway. The interaction of C2 with C4 and of factor B with C3b are both dependent on Mg2+ binding sites within the VWA domains and the VWA domain of factor B has been shown to mediate the binding of C3. This is consistent with the common inferred function of VWA domains as magnesium-dependent protein interaction domains.
Probab=99.86 E-value=8.1e-21 Score=183.55 Aligned_cols=168 Identities=20% Similarity=0.226 Sum_probs=127.1
Q ss_pred eEEEEEeCCcCCCcchHHHHHHHHHHHHHhcCC---CCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCC-----
Q 007718 327 DVVFLVDVSGSMQGVLLEQTKNALSASLSKLNP---QDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLV----- 398 (591)
Q Consensus 327 ~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~~---~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~----- 398 (591)
+++||||+||||.+.+++.+|+++..+++.|+. +++++|+.|++++..+.+.. .....+...+.+.|+++.
T Consensus 2 di~~vlD~SgSM~~~~~~~~k~~~~~l~~~l~~~~~~~~v~li~Fs~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~ 80 (198)
T cd01470 2 NIYIALDASDSIGEEDFDEAKNAIKTLIEKISSYEVSPRYEIISYASDPKEIVSIR-DFNSNDADDVIKRLEDFNYDDHG 80 (198)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHHHHHccccCCCceEEEEEecCCceEEEecc-cCCCCCHHHHHHHHHhCCccccc
Confidence 799999999999999999999999999999863 79999999999988765532 233344556677777665
Q ss_pred CCCCCchHHHHHHHHHhhhcC--------CCCccEEEEEecCCCCCh---hhHHHHHHHHHhcC------CCCCCeEEEE
Q 007718 399 AGGGTNILLPLKQAIKLLSDT--------SESIPLIFLITDGTVGDE---RGICNEIKSYLTNT------RSISPRICTF 461 (591)
Q Consensus 399 ~~GgT~l~~aL~~a~~~l~~~--------~~~~~~IillTDG~~~~~---~~i~~~v~~~~~~~------~~~~~ri~t~ 461 (591)
.+|||+++.||+.+.+.+... ....+.|||||||.++.. ....+.+++.+... ...+++||+|
T Consensus 81 ~~ggT~~~~Al~~~~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~i 160 (198)
T cd01470 81 DKTGTNTAAALKKVYERMALEKVRNKEAFNETRHVIILFTDGKSNMGGSPLPTVDKIKNLVYKNNKSDNPREDYLDVYVF 160 (198)
T ss_pred CccchhHHHHHHHHHHHHHHHHhcCccchhhcceEEEEEcCCCcCCCCChhHHHHHHHHHHhcccccccchhcceeEEEE
Confidence 348999999999998765311 123467999999998743 23344444443221 2346899999
Q ss_pred EcCCCCCHHHHHHHHHhCCC--EEEEcCCCCchHHH
Q 007718 462 GVGLYCNHYFLQILAQIGRG--YYDSAYDPGSVDYR 495 (591)
Q Consensus 462 GiG~~~~~~lL~~LA~~~~G--~~~~v~~~~~l~~~ 495 (591)
|+|++.|..+|+.||+.++| +++.+.+.+++.+.
T Consensus 161 GvG~~~~~~~L~~iA~~~~g~~~~f~~~~~~~l~~v 196 (198)
T cd01470 161 GVGDDVNKEELNDLASKKDNERHFFKLKDYEDLQEV 196 (198)
T ss_pred ecCcccCHHHHHHHhcCCCCCceEEEeCCHHHHHHh
Confidence 99999999999999999999 46777776666543
No 10
>cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=99.86 E-value=1.8e-20 Score=182.28 Aligned_cols=165 Identities=19% Similarity=0.254 Sum_probs=127.7
Q ss_pred CccCceEEEEEeCCcCCC------cchHHHHHHHHHHHHHhcCCCCeEEEEEeCCceE------eee---cCcccC---C
Q 007718 322 KVFRKDVVFLVDVSGSMQ------GVLLEQTKNALSASLSKLNPQDSFNIIAFNGETH------LFS---SSMKLA---S 383 (591)
Q Consensus 322 ~~~~~~ivfviD~SgSM~------g~~i~~ak~al~~~l~~L~~~d~f~Ii~F~~~~~------~~~---~~~~~~---~ 383 (591)
...+.+++||||+||||. +.+|+.+|+++..+++.++++++|+|+.|+++.. ... +..... .
T Consensus 17 ~~~~~~vv~vlD~SgSM~~~~~~~~~rl~~ak~a~~~~l~~l~~~~~v~lv~F~~~~~~~~~~~~~~p~~~~~~~~~~~~ 96 (206)
T cd01456 17 PQLPPNVAIVLDNSGSMREVDGGGETRLDNAKAALDETANALPDGTRLGLWTFSGDGDNPLDVRVLVPKGCLTAPVNGFP 96 (206)
T ss_pred cCCCCcEEEEEeCCCCCcCCCCCcchHHHHHHHHHHHHHHhCCCCceEEEEEecCCCCCCccccccccccccccccCCCC
Confidence 346789999999999998 5799999999999999999999999999999532 111 111111 1
Q ss_pred HHHHHHHHHHHhcCC-CCCCCchHHHHHHHHHhhhcCCCCccEEEEEecCCCCChhhHHHHHHHHHhcC-CCCCCeEEEE
Q 007718 384 QGTIINATQWLSSLV-AGGGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVGDERGICNEIKSYLTNT-RSISPRICTF 461 (591)
Q Consensus 384 ~~~~~~a~~~i~~l~-~~GgT~l~~aL~~a~~~l~~~~~~~~~IillTDG~~~~~~~i~~~v~~~~~~~-~~~~~ri~t~ 461 (591)
..+.+.+.+.|+++. +.|+|++..+|+.|.+.+. .+..+.|||+|||..++....++.+++..... ...+++||+|
T Consensus 97 ~~~~~~l~~~i~~i~~~~G~T~l~~aL~~a~~~l~--~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~~~~~i~i~~i 174 (206)
T cd01456 97 SAQRSALDAALNSLQTPTGWTPLAAALAEAAAYVD--PGRVNVVVLITDGEDTCGPDPCEVARELAKRRTPAPPIKVNVI 174 (206)
T ss_pred cccHHHHHHHHHhhcCCCCcChHHHHHHHHHHHhC--CCCcceEEEEcCCCccCCCCHHHHHHHHHHhcCCCCCceEEEE
Confidence 135667777888888 8899999999999999885 34458999999999876544444444443321 1246999999
Q ss_pred EcCCCCCHHHHHHHHHhCCCEE-EEcCC
Q 007718 462 GVGLYCNHYFLQILAQIGRGYY-DSAYD 488 (591)
Q Consensus 462 GiG~~~~~~lL~~LA~~~~G~~-~~v~~ 488 (591)
|+|.+.+..+|+.||..++|.| +.+.+
T Consensus 175 giG~~~~~~~l~~iA~~tgG~~~~~~~~ 202 (206)
T cd01456 175 DFGGDADRAELEAIAEATGGTYAYNQSD 202 (206)
T ss_pred EecCcccHHHHHHHHHhcCCeEeccccc
Confidence 9999999999999999999999 55444
No 11
>PRK13685 hypothetical protein; Provisional
Probab=99.81 E-value=2.3e-18 Score=178.79 Aligned_cols=170 Identities=19% Similarity=0.204 Sum_probs=132.1
Q ss_pred cCceEEEEEeCCcCCCc-----chHHHHHHHHHHHHHhcCCCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCC
Q 007718 324 FRKDVVFLVDVSGSMQG-----VLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLV 398 (591)
Q Consensus 324 ~~~~ivfviD~SgSM~g-----~~i~~ak~al~~~l~~L~~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~ 398 (591)
.+.+++|++|+|+||.+ ++++.+|+++..+++.++++|+++++.|++++....+.. .+.+.....|+++.
T Consensus 87 ~~~~vvlvlD~S~SM~~~D~~p~RL~~ak~~~~~~l~~l~~~d~vglv~Fa~~a~~~~p~t-----~d~~~l~~~l~~l~ 161 (326)
T PRK13685 87 NRAVVMLVIDVSQSMRATDVEPNRLAAAQEAAKQFADELTPGINLGLIAFAGTATVLVSPT-----TNREATKNAIDKLQ 161 (326)
T ss_pred CCceEEEEEECCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCeEEEEEEcCceeecCCCC-----CCHHHHHHHHHhCC
Confidence 45689999999999986 589999999999999999899999999999988765432 24445566678888
Q ss_pred CCCCCchHHHHHHHHHhhhcC--------CCCccEEEEEecCCCCChh------hHHHHHHHHHhcCCCCCCeEEEEEcC
Q 007718 399 AGGGTNILLPLKQAIKLLSDT--------SESIPLIFLITDGTVGDER------GICNEIKSYLTNTRSISPRICTFGVG 464 (591)
Q Consensus 399 ~~GgT~l~~aL~~a~~~l~~~--------~~~~~~IillTDG~~~~~~------~i~~~v~~~~~~~~~~~~ri~t~GiG 464 (591)
++|+|+++.++..|++.+... ....+.||++|||..+.+. ...+..+ .+. +.+++||+||+|
T Consensus 162 ~~~~T~~g~al~~A~~~l~~~~~~~~~~~~~~~~~IILlTDG~~~~~~~~~~~~~~~~aa~-~a~---~~gi~i~~Ig~G 237 (326)
T PRK13685 162 LADRTATGEAIFTALQAIATVGAVIGGGDTPPPARIVLMSDGKETVPTNPDNPRGAYTAAR-TAK---DQGVPISTISFG 237 (326)
T ss_pred CCCCcchHHHHHHHHHHHHhhhcccccccCCCCCEEEEEcCCCCCCCCCCCCcccHHHHHH-HHH---HcCCeEEEEEEC
Confidence 999999999999999887521 2234689999999976432 1112222 222 246999999999
Q ss_pred CC--------------CCHHHHHHHHHhCCCEEEEcCCCCchHHHHHHHHHH
Q 007718 465 LY--------------CNHYFLQILAQIGRGYYDSAYDPGSVDYRIRRFFTA 502 (591)
Q Consensus 465 ~~--------------~~~~lL~~LA~~~~G~~~~v~~~~~l~~~~~~~~~~ 502 (591)
.. .|...|+.||+.|||.|+.+.+.+++++.+.++-+.
T Consensus 238 ~~~g~~~~~g~~~~~~~d~~~L~~iA~~tgG~~~~~~~~~~L~~if~~I~~~ 289 (326)
T PRK13685 238 TPYGSVEINGQRQPVPVDDESLKKIAQLSGGEFYTAASLEELRAVYATLQQQ 289 (326)
T ss_pred CCCCCcCcCCceeeecCCHHHHHHHHHhcCCEEEEcCCHHHHHHHHHHHHHH
Confidence 74 478899999999999999998887777666665444
No 12
>TIGR00868 hCaCC calcium-activated chloride channel protein 1. distributions. found a row in 1A13.INFO that was not parsed out
Probab=99.80 E-value=2e-18 Score=194.20 Aligned_cols=161 Identities=22% Similarity=0.225 Sum_probs=124.0
Q ss_pred CccCceEEEEEeCCcCCCc-chHHHHHHHHHHHH-HhcCCCCeEEEEEeCCceEeeecCcccCCH-HHHHHHHHHHhcCC
Q 007718 322 KVFRKDVVFLVDVSGSMQG-VLLEQTKNALSASL-SKLNPQDSFNIIAFNGETHLFSSSMKLASQ-GTIINATQWLSSLV 398 (591)
Q Consensus 322 ~~~~~~ivfviD~SgSM~g-~~i~~ak~al~~~l-~~L~~~d~f~Ii~F~~~~~~~~~~~~~~~~-~~~~~a~~~i~~l~ 398 (591)
+..++.++||||+||||.+ .+++.+|+|+..++ +.++++|+++|+.|++.+....+. .+.+. ...+.....+ .+.
T Consensus 301 q~~~r~VVLVLDvSGSM~g~dRL~~lkqAA~~fL~~~l~~~DrVGLVtFsssA~vl~pL-t~Its~~dr~aL~~~L-~~~ 378 (863)
T TIGR00868 301 KIRQRIVCLVLDKSGSMTVEDRLKRMNQAAKLFLLQTVEKGSWVGMVTFDSAAYIKNEL-IQITSSAERDALTANL-PTA 378 (863)
T ss_pred ccCCceEEEEEECCccccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEECCceeEeecc-ccCCcHHHHHHHHHhh-ccc
Confidence 4456789999999999986 58999999998876 457889999999999998876553 33333 3444444444 356
Q ss_pred CCCCCchHHHHHHHHHhhhcCC--CCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHH
Q 007718 399 AGGGTNILLPLKQAIKLLSDTS--ESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILA 476 (591)
Q Consensus 399 ~~GgT~l~~aL~~a~~~l~~~~--~~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~LA 476 (591)
++|||+|+.||+.|++.+.+.. ...+.|||||||+.+........++ ..+++||+||+|.+.+. .|+.||
T Consensus 379 A~GGT~I~~GL~~Alq~L~~~~~~~~~~~IILLTDGedn~~~~~l~~lk-------~~gVtI~TIg~G~dad~-~L~~IA 450 (863)
T TIGR00868 379 ASGGTSICSGLKAAFQVIKKSYQSTDGSEIVLLTDGEDNTISSCFEEVK-------QSGAIIHTIALGPSAAK-ELEELS 450 (863)
T ss_pred cCCCCcHHHHHHHHHHHHHhcccccCCCEEEEEeCCCCCCHHHHHHHHH-------HcCCEEEEEEeCCChHH-HHHHHH
Confidence 8899999999999999987643 2457999999999876544333322 23599999999998765 489999
Q ss_pred HhCCCEEEEcCCCCch
Q 007718 477 QIGRGYYDSAYDPGSV 492 (591)
Q Consensus 477 ~~~~G~~~~v~~~~~l 492 (591)
+.+||.++++.+.+++
T Consensus 451 ~~TGG~~f~asd~~dl 466 (863)
T TIGR00868 451 DMTGGLRFYASDQADN 466 (863)
T ss_pred HhcCCEEEEeCCHHHH
Confidence 9999999999876554
No 13
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=99.79 E-value=2.9e-18 Score=162.83 Aligned_cols=156 Identities=25% Similarity=0.289 Sum_probs=117.9
Q ss_pred EEEEEeCCcCCCcc-hHHHHHHHHHHHHHh-cCCCCeEEEEEeCCc-eEeeecCcccCCHHHHHHHHHHHhcCCCCCCCc
Q 007718 328 VVFLVDVSGSMQGV-LLEQTKNALSASLSK-LNPQDSFNIIAFNGE-THLFSSSMKLASQGTIINATQWLSSLVAGGGTN 404 (591)
Q Consensus 328 ivfviD~SgSM~g~-~i~~ak~al~~~l~~-L~~~d~f~Ii~F~~~-~~~~~~~~~~~~~~~~~~a~~~i~~l~~~GgT~ 404 (591)
++|+||+||||.+. +++.+|+++..++.. +.++|+++|+.|+++ .....+.. .+...+.+.++.+..+|+|+
T Consensus 3 v~lvlD~SgSM~~~~rl~~ak~a~~~~~~~~~~~~d~v~lv~F~~~~~~~~~~~t-----~~~~~~~~~l~~l~~~G~T~ 77 (178)
T cd01451 3 VIFVVDASGSMAARHRMAAAKGAVLSLLRDAYQRRDKVALIAFRGTEAEVLLPPT-----RSVELAKRRLARLPTGGGTP 77 (178)
T ss_pred EEEEEECCccCCCccHHHHHHHHHHHHHHHhhcCCCEEEEEEECCCCceEEeCCC-----CCHHHHHHHHHhCCCCCCCc
Confidence 78999999999976 999999999998864 577999999999875 45433321 23445567788888899999
Q ss_pred hHHHHHHHHHhh-hcC--CCCccEEEEEecCCCCChhh----HHHHHHHHHhcCCCCCCeEEEEEcCCC-CCHHHHHHHH
Q 007718 405 ILLPLKQAIKLL-SDT--SESIPLIFLITDGTVGDERG----ICNEIKSYLTNTRSISPRICTFGVGLY-CNHYFLQILA 476 (591)
Q Consensus 405 l~~aL~~a~~~l-~~~--~~~~~~IillTDG~~~~~~~----i~~~v~~~~~~~~~~~~ri~t~GiG~~-~~~~lL~~LA 476 (591)
+..+|..+++.+ ... .+..+.|||+|||..+.... ....+.+.+. ..++.+++||+|.+ .+..+|+.||
T Consensus 78 l~~aL~~a~~~l~~~~~~~~~~~~ivliTDG~~~~g~~~~~~~~~~~~~~l~---~~gi~v~~I~~~~~~~~~~~l~~iA 154 (178)
T cd01451 78 LAAGLLAAYELAAEQARDPGQRPLIVVITDGRANVGPDPTADRALAAARKLR---ARGISALVIDTEGRPVRRGLAKDLA 154 (178)
T ss_pred HHHHHHHHHHHHHHHhcCCCCceEEEEECCCCCCCCCCchhHHHHHHHHHHH---hcCCcEEEEeCCCCccCccHHHHHH
Confidence 999999999987 211 23357999999999874321 1122222222 34588999999864 5788999999
Q ss_pred HhCCCEEEEcCCCCc
Q 007718 477 QIGRGYYDSAYDPGS 491 (591)
Q Consensus 477 ~~~~G~~~~v~~~~~ 491 (591)
+.+||.|+++.+.+.
T Consensus 155 ~~tgG~~~~~~d~~~ 169 (178)
T cd01451 155 RALGGQYVRLPDLSA 169 (178)
T ss_pred HHcCCeEEEcCcCCH
Confidence 999999999988753
No 14
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=99.79 E-value=1.2e-18 Score=166.60 Aligned_cols=158 Identities=19% Similarity=0.197 Sum_probs=120.2
Q ss_pred cCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhc---------CCCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHH
Q 007718 324 FRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKL---------NPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWL 394 (591)
Q Consensus 324 ~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L---------~~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i 394 (591)
+|.|++||||+|+||.+.+++.+|++++.+++.| +.+++++|+.|++++....+.... ..+...+.+.|
T Consensus 1 c~~dvv~vlD~S~Sm~~~~~~~~k~~~~~~~~~l~~~~~~~i~~~~~rvglv~fs~~~~~~~~l~~~--~~~~~~l~~~i 78 (186)
T cd01480 1 GPVDITFVLDSSESVGLQNFDITKNFVKRVAERFLKDYYRKDPAGSWRVGVVQYSDQQEVEAGFLRD--IRNYTSLKEAV 78 (186)
T ss_pred CCeeEEEEEeCCCccchhhHHHHHHHHHHHHHHHhhhhccCCCCCceEEEEEEecCCceeeEecccc--cCCHHHHHHHH
Confidence 4789999999999999999999999999999888 346899999999998766543211 23445556667
Q ss_pred hcCCC-CCCCchHHHHHHHHHhhhc--CCCCccEEEEEecCCCCCh--hhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCH
Q 007718 395 SSLVA-GGGTNILLPLKQAIKLLSD--TSESIPLIFLITDGTVGDE--RGICNEIKSYLTNTRSISPRICTFGVGLYCNH 469 (591)
Q Consensus 395 ~~l~~-~GgT~l~~aL~~a~~~l~~--~~~~~~~IillTDG~~~~~--~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~ 469 (591)
++++. +|+|+++.||+.|.+.+.. .++..+.|||+|||..+.. ....+.++.. . ..++.||++|+|. .|.
T Consensus 79 ~~l~~~gg~T~~~~AL~~a~~~l~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~~~-~---~~gi~i~~vgig~-~~~ 153 (186)
T cd01480 79 DNLEYIGGGTFTDCALKYATEQLLEGSHQKENKFLLVITDGHSDGSPDGGIEKAVNEA-D---HLGIKIFFVAVGS-QNE 153 (186)
T ss_pred HhCccCCCCccHHHHHHHHHHHHhccCCCCCceEEEEEeCCCcCCCcchhHHHHHHHH-H---HCCCEEEEEecCc-cch
Confidence 77764 7999999999999998864 3466789999999997532 2222222222 2 3469999999999 788
Q ss_pred HHHHHHHHhCCCEEEEcCCC
Q 007718 470 YFLQILAQIGRGYYDSAYDP 489 (591)
Q Consensus 470 ~lL~~LA~~~~G~~~~v~~~ 489 (591)
..|+.||..+++.|+ ..+.
T Consensus 154 ~~L~~IA~~~~~~~~-~~~~ 172 (186)
T cd01480 154 EPLSRIACDGKSALY-RENF 172 (186)
T ss_pred HHHHHHHcCCcchhh-hcch
Confidence 899999999988744 3443
No 15
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=99.79 E-value=1.1e-17 Score=159.11 Aligned_cols=161 Identities=25% Similarity=0.254 Sum_probs=122.9
Q ss_pred CceEEEEEeCCcCCCc------chHHHHHHHHHHHHHhcCCCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCC
Q 007718 325 RKDVVFLVDVSGSMQG------VLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLV 398 (591)
Q Consensus 325 ~~~ivfviD~SgSM~g------~~i~~ak~al~~~l~~L~~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~ 398 (591)
..+++|++|+|+||.. .+++.+|.++..++... ++++++++.|+++.....+.. .+...+.++++.+....
T Consensus 2 ~~~vv~vlD~S~SM~~~~~~~~~r~~~a~~~~~~~~~~~-~~~~v~lv~f~~~~~~~~~~~--~~~~~~~~~l~~l~~~~ 78 (180)
T cd01467 2 GRDIMIALDVSGSMLAQDFVKPSRLEAAKEVLSDFIDRR-ENDRIGLVVFAGAAFTQAPLT--LDRESLKELLEDIKIGL 78 (180)
T ss_pred CceEEEEEECCcccccccCCCCCHHHHHHHHHHHHHHhC-CCCeEEEEEEcCCeeeccCCC--ccHHHHHHHHHHhhhcc
Confidence 4689999999999974 36889999998888764 589999999999887654422 34455555655555445
Q ss_pred CCCCCchHHHHHHHHHhhhcCCCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCC-----------CC
Q 007718 399 AGGGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGL-----------YC 467 (591)
Q Consensus 399 ~~GgT~l~~aL~~a~~~l~~~~~~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~-----------~~ 467 (591)
.+|+|++..+|..+++++.......+.|||+|||..+........+.+.+. ..+++||+||+|. ..
T Consensus 79 ~~g~T~l~~al~~a~~~l~~~~~~~~~iiliTDG~~~~g~~~~~~~~~~~~---~~gi~i~~i~ig~~~~~~~~~~~~~~ 155 (180)
T cd01467 79 AGQGTAIGDAIGLAIKRLKNSEAKERVIVLLTDGENNAGEIDPATAAELAK---NKGVRIYTIGVGKSGSGPKPDGSTIL 155 (180)
T ss_pred cCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCCHHHHHHHHH---HCCCEEEEEEecCCCCCcCCCCcccC
Confidence 679999999999999998765555689999999997654322222222222 2358999999998 47
Q ss_pred CHHHHHHHHHhCCCEEEEcCCCCc
Q 007718 468 NHYFLQILAQIGRGYYDSAYDPGS 491 (591)
Q Consensus 468 ~~~lL~~LA~~~~G~~~~v~~~~~ 491 (591)
+...|+.||+.++|.|+++.+.++
T Consensus 156 ~~~~l~~la~~tgG~~~~~~~~~~ 179 (180)
T cd01467 156 DEDSLVEIADKTGGRIFRALDGFE 179 (180)
T ss_pred CHHHHHHHHHhcCCEEEEecCccc
Confidence 888999999999999999987764
No 16
>TIGR02921 PEP_integral PEP-CTERM family integral membrane protein. Members of this protein family, found in three different species so far, have a PEP-CTERM sequence at the carboxyl-terminus (see model TIGR02595), but are unusual among PEP-CTERM proteins in having multiple predicted transmembrane segments. The function is unknown. It is proposed that a member of the EpsH family, to be designated exosortase (see TIGR02602), recognizes and cleaves PEP-CTERM proteins in a manner analogous to the cleavage of LPXTG proteins by sortase (see Haft, et al., 2006).
Probab=99.78 E-value=1.2e-17 Score=173.40 Aligned_cols=102 Identities=13% Similarity=0.084 Sum_probs=90.9
Q ss_pred ccccccceeEEEEEEEEeeeEEEEEEEEEEecccCCCceeeEEEEeecCCCeeEEEEEEEECCEEEEE---EEEehHhhh
Q 007718 80 ALIPLHMHGVEMEVDCCLDTAFVAFNGSWRVHCIMAGRQCDCTIAVPLGERGSLLGVEVEIDGRSYQS---KLISLDDAE 156 (591)
Q Consensus 80 ~~~pL~~~~v~v~V~~~~~~a~v~~~q~f~n~~~~~~~~~e~~y~fPL~~~a~V~~f~~~i~gk~i~~---~v~~k~~a~ 156 (591)
..+-|.++.|+|+|.|. .|+|+++|+|+| ++++.+|+.|.||||++|+|++|+|.++|++..+ +++||++||
T Consensus 412 kaV~L~Sh~VtVeIeg~--iA~TEIEqTF~N---PN~r~LEGElsFPLPEgAtVTGyALdvdGkL~Daw~~VVVEKEKAR 486 (952)
T TIGR02921 412 KKVLIANMAITVEEHGD--NADIEIVETLEN---QTPENHEVFFHFSLPEEAAITGLWLGDDAKDDDKFAFALAPRGAAQ 486 (952)
T ss_pred CceeEeeeeEEEEEECC--eEEEEEEEEEEC---CCCCceeEEEEecCCCCCeeeeeeecCCccccccccceeccHHHHH
Confidence 34667888888888887 567999999999 7999999999999999999999999999999988 999999999
Q ss_pred h-hhhhcccc--CCccce---ecCceEEEcCCCCCC
Q 007718 157 Y-KENVGKSK--GDGRYL---KGQIYTLRIPQVDGG 186 (591)
Q Consensus 157 ~-~~~~~~~~--~~~~ll---~~~~F~~~v~~i~~g 186 (591)
+ ||++.+++ .|+||+ .+|.|++||+||||.
T Consensus 487 QVYEdevRQGrpiDPALLEK~~gN~FriRVYPIPPr 522 (952)
T TIGR02921 487 KVYNDEVQQERPIDPALLEQVGPRHYRLRAFPIPPR 522 (952)
T ss_pred HHHHHHHHhcCCCCchhheeccCCeeeEEEccCCcc
Confidence 6 66666666 599998 589999999999994
No 17
>cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=99.78 E-value=3.5e-18 Score=161.96 Aligned_cols=141 Identities=26% Similarity=0.359 Sum_probs=108.7
Q ss_pred CceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcCC------CCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCC
Q 007718 325 RKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNP------QDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLV 398 (591)
Q Consensus 325 ~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~~------~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~ 398 (591)
..+++||||+||||.+.+++.+|+++..+++.|.+ +++++|+.|+++++...+... . .+ ..+..+.
T Consensus 3 ~~~v~~llD~SgSM~~~~~~~~k~a~~~~~~~l~~~~~~~~~~~v~ii~F~~~a~~~~~l~~-~--~~-----~~~~~l~ 74 (176)
T cd01464 3 RLPIYLLLDTSGSMAGEPIEALNQGLQMLQSELRQDPYALESVEISVITFDSAARVIVPLTP-L--ES-----FQPPRLT 74 (176)
T ss_pred CCCEEEEEECCCCCCChHHHHHHHHHHHHHHHHhcChhhccccEEEEEEecCCceEecCCcc-H--Hh-----cCCCccc
Confidence 35689999999999999999999999999998863 569999999999887655321 1 11 1244678
Q ss_pred CCCCCchHHHHHHHHHhhhcC---------CCCccEEEEEecCCCCChhhHH-HHHHHHHhcCCCCCCeEEEEEcCCCCC
Q 007718 399 AGGGTNILLPLKQAIKLLSDT---------SESIPLIFLITDGTVGDERGIC-NEIKSYLTNTRSISPRICTFGVGLYCN 468 (591)
Q Consensus 399 ~~GgT~l~~aL~~a~~~l~~~---------~~~~~~IillTDG~~~~~~~i~-~~v~~~~~~~~~~~~ri~t~GiG~~~~ 468 (591)
++|||+++.||+.|++.+... ....+.|||+|||++++..... +.+++. ...+++|++||+|.++|
T Consensus 75 ~~GgT~l~~aL~~a~~~l~~~~~~~~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~~----~~~~~~i~~igiG~~~~ 150 (176)
T cd01464 75 ASGGTSMGAALELALDCIDRRVQRYRADQKGDWRPWVFLLTDGEPTDDLTAAIERIKEA----RDSKGRIVACAVGPKAD 150 (176)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHhcccCcCCcCcEEEEEcCCCCCchHHHHHHHHHhh----cccCCcEEEEEeccccC
Confidence 889999999999999988542 1224589999999987653322 333332 23368999999999999
Q ss_pred HHHHHHHHH
Q 007718 469 HYFLQILAQ 477 (591)
Q Consensus 469 ~~lL~~LA~ 477 (591)
..+|+.||.
T Consensus 151 ~~~L~~ia~ 159 (176)
T cd01464 151 LDTLKQITE 159 (176)
T ss_pred HHHHHHHHC
Confidence 999999986
No 18
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.
Probab=99.77 E-value=1.5e-17 Score=155.71 Aligned_cols=152 Identities=20% Similarity=0.182 Sum_probs=118.2
Q ss_pred ceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcC---CCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCCC-CC
Q 007718 326 KDVVFLVDVSGSMQGVLLEQTKNALSASLSKLN---PQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVA-GG 401 (591)
Q Consensus 326 ~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~---~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~~-~G 401 (591)
.|++||+|.||||.+.+++.+|+++..++..|. .+++++|+.|++++....+.....+ ...+.+.++.+.. +|
T Consensus 1 ~Dvv~vlD~SgSm~~~~~~~~k~~~~~~~~~l~~~~~~~~~giv~Fs~~~~~~~~~~~~~~---~~~~~~~l~~l~~~~g 77 (164)
T cd01472 1 ADIVFLVDGSESIGLSNFNLVKDFVKRVVERLDIGPDGVRVGVVQYSDDPRTEFYLNTYRS---KDDVLEAVKNLRYIGG 77 (164)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHHHHhhcccCCCCeEEEEEEEcCceeEEEecCCCCC---HHHHHHHHHhCcCCCC
Confidence 479999999999999899999999999999885 4679999999999887655432233 4445555666776 58
Q ss_pred CCchHHHHHHHHHhhhc-----CCCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHH
Q 007718 402 GTNILLPLKQAIKLLSD-----TSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILA 476 (591)
Q Consensus 402 gT~l~~aL~~a~~~l~~-----~~~~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~LA 476 (591)
+|+++.||..|.+.+.. .++..+.|||+|||..++... ...... . ..++++|+||+|.. +...|+.||
T Consensus 78 ~T~~~~al~~a~~~l~~~~~~~~~~~~~~iiliTDG~~~~~~~--~~~~~l-~---~~gv~i~~ig~g~~-~~~~L~~ia 150 (164)
T cd01472 78 GTNTGKALKYVRENLFTEASGSREGVPKVLVVITDGKSQDDVE--EPAVEL-K---QAGIEVFAVGVKNA-DEEELKQIA 150 (164)
T ss_pred CchHHHHHHHHHHHhCCcccCCCCCCCEEEEEEcCCCCCchHH--HHHHHH-H---HCCCEEEEEECCcC-CHHHHHHHH
Confidence 89999999999998875 235567899999998765322 222222 2 13589999999987 999999999
Q ss_pred HhCCCEEEEcC
Q 007718 477 QIGRGYYDSAY 487 (591)
Q Consensus 477 ~~~~G~~~~v~ 487 (591)
..++|.|.+..
T Consensus 151 ~~~~~~~~~~~ 161 (164)
T cd01472 151 SDPKELYVFNV 161 (164)
T ss_pred CCCchheEEec
Confidence 99999877643
No 19
>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax. ATR is the cellular receptor for the anthrax protective antigen and facilitates entry of the toxin into cells. The VWA domain in ATR contains the toxin binding site and mediates interaction with protective antigen. The binding is mediated by divalent cations that binds to the MIDAS motif. These proteins are a family of vertebrate ECM receptors expressed by endothelial cells.
Probab=99.77 E-value=1.9e-17 Score=158.26 Aligned_cols=173 Identities=18% Similarity=0.179 Sum_probs=121.3
Q ss_pred cCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhc-CCCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCCCCCC
Q 007718 324 FRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKL-NPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAGGG 402 (591)
Q Consensus 324 ~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L-~~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~~~Gg 402 (591)
.+.|++||||+||||.+. +...+++++.+++.+ .+++||+|+.|++++....+... ..+.+.++++.+..+.++|+
T Consensus 3 ~~~Dvv~llD~SgSm~~~-~~~~~~~~~~l~~~~~~~~~rvglv~Fs~~~~~~~~l~~--~~~~~~~~l~~l~~~~~~g~ 79 (185)
T cd01474 3 GHFDLYFVLDKSGSVAAN-WIEIYDFVEQLVDRFNSPGLRFSFITFSTRATKILPLTD--DSSAIIKGLEVLKKVTPSGQ 79 (185)
T ss_pred CceeEEEEEeCcCchhhh-HHHHHHHHHHHHHHcCCCCcEEEEEEecCCceEEEeccc--cHHHHHHHHHHHhccCCCCC
Confidence 357999999999999874 444556677776664 46799999999999887766432 22345566666777778899
Q ss_pred CchHHHHHHHHHhhhcC-C---CCccEEEEEecCCCCC--hhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHH
Q 007718 403 TNILLPLKQAIKLLSDT-S---ESIPLIFLITDGTVGD--ERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILA 476 (591)
Q Consensus 403 T~l~~aL~~a~~~l~~~-~---~~~~~IillTDG~~~~--~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~LA 476 (591)
|+++.||+.|.+.+... . ...+.|||+|||..++ ........+.. . ..++.||+||+| +.+...|+.||
T Consensus 80 T~~~~aL~~a~~~l~~~~~~~r~~~~~villTDG~~~~~~~~~~~~~a~~l-~---~~gv~i~~vgv~-~~~~~~L~~iA 154 (185)
T cd01474 80 TYIHEGLENANEQIFNRNGGGRETVSVIIALTDGQLLLNGHKYPEHEAKLS-R---KLGAIVYCVGVT-DFLKSQLINIA 154 (185)
T ss_pred CcHHHHHHHHHHHHHhhccCCCCCCeEEEEEcCCCcCCCCCcchHHHHHHH-H---HcCCEEEEEeec-hhhHHHHHHHh
Confidence 99999999999877421 1 1236899999999843 22232332222 2 235899999995 46889999999
Q ss_pred HhCCCEEEEcCCCCchHHHHHHHHHHhc
Q 007718 477 QIGRGYYDSAYDPGSVDYRIRRFFTAAS 504 (591)
Q Consensus 477 ~~~~G~~~~v~~~~~l~~~~~~~~~~~~ 504 (591)
..+++.|....+.+.+...+..+.++++
T Consensus 155 ~~~~~~f~~~~~~~~l~~~~~~~~~~~C 182 (185)
T cd01474 155 DSKEYVFPVTSGFQALSGIIESVVKKAC 182 (185)
T ss_pred CCCCeeEecCccHHHHHHHHHHHHHhhc
Confidence 9775444344556667766666666554
No 20
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=99.77 E-value=1.7e-17 Score=157.84 Aligned_cols=161 Identities=17% Similarity=0.252 Sum_probs=120.6
Q ss_pred ceEEEEEeCCcCCCc-----chHHHHHHHHHHHHHhc---CCCCeEEEEEe-CCceEeeecCcccCCHHHHHHHHHHHhc
Q 007718 326 KDVVFLVDVSGSMQG-----VLLEQTKNALSASLSKL---NPQDSFNIIAF-NGETHLFSSSMKLASQGTIINATQWLSS 396 (591)
Q Consensus 326 ~~ivfviD~SgSM~g-----~~i~~ak~al~~~l~~L---~~~d~f~Ii~F-~~~~~~~~~~~~~~~~~~~~~a~~~i~~ 396 (591)
++++|++|.|+||.. ++++.+|+++..+++.+ +++++++++.| ++.++...|.. .+.+.+ ...++.
T Consensus 4 r~ivi~lD~S~SM~a~D~~ptRl~~ak~~~~~fi~~~~~~~~~~~vglv~f~~~~a~~~~PlT--~D~~~~---~~~L~~ 78 (183)
T cd01453 4 RHLIIVIDCSRSMEEQDLKPSRLAVVLKLLELFIEEFFDQNPISQLGIISIKNGRAEKLTDLT--GNPRKH---IQALKT 78 (183)
T ss_pred eEEEEEEECcHHHhcCCCCchHHHHHHHHHHHHHHHHhhcCccccEEEEEEcCCccEEEECCC--CCHHHH---HHHhhc
Confidence 689999999999985 69999999999999864 67899999999 78888876653 333333 344443
Q ss_pred C-CCCCCCchHHHHHHHHHhhhcCCC--CccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHH
Q 007718 397 L-VAGGGTNILLPLKQAIKLLSDTSE--SIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQ 473 (591)
Q Consensus 397 l-~~~GgT~l~~aL~~a~~~l~~~~~--~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~ 473 (591)
+ ...|||++..||+.|++.+...+. ..+.|||+|||...+...+.+.. +.+.+ .+++|+++|+|.+ ..+|+
T Consensus 79 ~~~~~G~t~l~~aL~~A~~~l~~~~~~~~~~iiil~sd~~~~~~~~~~~~~-~~l~~---~~I~v~~IgiG~~--~~~L~ 152 (183)
T cd01453 79 ARECSGEPSLQNGLEMALESLKHMPSHGSREVLIIFSSLSTCDPGNIYETI-DKLKK---ENIRVSVIGLSAE--MHICK 152 (183)
T ss_pred ccCCCCchhHHHHHHHHHHHHhcCCccCceEEEEEEcCCCcCChhhHHHHH-HHHHH---cCcEEEEEEechH--HHHHH
Confidence 3 556889999999999999965322 24578889998865554443332 22222 3599999999964 56899
Q ss_pred HHHHhCCCEEEEcCCCCchHHHHH
Q 007718 474 ILAQIGRGYYDSAYDPGSVDYRIR 497 (591)
Q Consensus 474 ~LA~~~~G~~~~v~~~~~l~~~~~ 497 (591)
.||+.+||.|+.+.+.+++.+.+.
T Consensus 153 ~ia~~tgG~~~~~~~~~~l~~~~~ 176 (183)
T cd01453 153 EICKATNGTYKVILDETHLKELLL 176 (183)
T ss_pred HHHHHhCCeeEeeCCHHHHHHHHH
Confidence 999999999999988765554333
No 21
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=99.76 E-value=1.4e-17 Score=156.12 Aligned_cols=163 Identities=33% Similarity=0.466 Sum_probs=122.4
Q ss_pred eEEEEEeCCcCCCcc-----hHHHHHHHHHHHHHhcCCCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHh-cCCCC
Q 007718 327 DVVFLVDVSGSMQGV-----LLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLS-SLVAG 400 (591)
Q Consensus 327 ~ivfviD~SgSM~g~-----~i~~ak~al~~~l~~L~~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~-~l~~~ 400 (591)
|++||+|.||||.+. +++.+|+++..+++.++ +++|+|+.|++......+. ..+.+.+.++++.+. .....
T Consensus 1 dvv~v~D~SgSM~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~l~~f~~~~~~~~~~--t~~~~~~~~~l~~~~~~~~~~ 77 (172)
T PF13519_consen 1 DVVFVLDNSGSMNGYDGNRTRIDQAKDALNELLANLP-GDRVGLVSFSDSSRTLSPL--TSDKDELKNALNKLSPQGMPG 77 (172)
T ss_dssp EEEEEEE-SGGGGTTTSSS-HHHHHHHHHHHHHHHHT-TSEEEEEEESTSCEEEEEE--ESSHHHHHHHHHTHHHHG--S
T ss_pred CEEEEEECCcccCCCCCCCcHHHHHHHHHHHHHHHCC-CCEEEEEEecccccccccc--cccHHHHHHHhhcccccccCc
Confidence 689999999999976 69999999999999986 7899999999987765542 356777777766665 35567
Q ss_pred CCCchHHHHHHHHHhhhcCCCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCC-HHHHHHHHHhC
Q 007718 401 GGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCN-HYFLQILAQIG 479 (591)
Q Consensus 401 GgT~l~~aL~~a~~~l~~~~~~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~-~~lL~~LA~~~ 479 (591)
|+|++..||..|.+.+...+...+.||++|||.++. ..++.++.. . ..+++||+|++|...+ ...|+.||+.+
T Consensus 78 ~~t~~~~al~~a~~~~~~~~~~~~~iv~iTDG~~~~--~~~~~~~~~-~---~~~i~i~~v~~~~~~~~~~~l~~la~~t 151 (172)
T PF13519_consen 78 GGTNLYDALQEAAKMLASSDNRRRAIVLITDGEDNS--SDIEAAKAL-K---QQGITIYTVGIGSDSDANEFLQRLAEAT 151 (172)
T ss_dssp SS--HHHHHHHHHHHHHC-SSEEEEEEEEES-TTHC--HHHHHHHHH-H---CTTEEEEEEEES-TT-EHHHHHHHHHHT
T ss_pred cCCcHHHHHHHHHHHHHhCCCCceEEEEecCCCCCc--chhHHHHHH-H---HcCCeEEEEEECCCccHHHHHHHHHHhc
Confidence 999999999999999987555678999999998763 223333333 2 3459999999998766 48999999999
Q ss_pred CCEEEEc-CCCCchHHHHHH
Q 007718 480 RGYYDSA-YDPGSVDYRIRR 498 (591)
Q Consensus 480 ~G~~~~v-~~~~~l~~~~~~ 498 (591)
+|.|+.+ .+.+++.+.+.+
T Consensus 152 gG~~~~~~~~~~~l~~~~~~ 171 (172)
T PF13519_consen 152 GGRYFHVDNDPEDLDDAFQQ 171 (172)
T ss_dssp EEEEEEE-SSSHHHHHHHHH
T ss_pred CCEEEEecCCHHHHHHHHhc
Confidence 9999998 567767665554
No 22
>cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell. In association with invasion, T. gondii sequentially discharges three sets of secretory organelles beginning with the micronemes, which contain adhesive proteins involved in parasite attachment to a host cell. Deployed as protein complexes, several micronemal proteins possess vertebrate-derived adhesive sequences that function in binding receptors. The VWA domain likely mediates the protein-protein interactions of these with their interacting partners.
Probab=99.74 E-value=6e-17 Score=154.86 Aligned_cols=149 Identities=23% Similarity=0.230 Sum_probs=113.9
Q ss_pred eEEEEEeCCcCCCcch-HHHHHHHHHHHHHhcC---CCCeEEEEEeCCceEeeecCccc--CCHHHHHHHHHHHhc-CCC
Q 007718 327 DVVFLVDVSGSMQGVL-LEQTKNALSASLSKLN---PQDSFNIIAFNGETHLFSSSMKL--ASQGTIINATQWLSS-LVA 399 (591)
Q Consensus 327 ~ivfviD~SgSM~g~~-i~~ak~al~~~l~~L~---~~d~f~Ii~F~~~~~~~~~~~~~--~~~~~~~~a~~~i~~-l~~ 399 (591)
|++||+|+||||.+.. ++.+|+++..+++.+. ++.+++|+.|++.+....+.... .+.+....+++.+.. ..+
T Consensus 2 Dv~~vlD~SgSm~~~~~~~~~k~~~~~~~~~~~~~~~~~~vglv~Fs~~~~~~~~l~~~~~~~~~~~~~~i~~l~~~~~~ 81 (186)
T cd01471 2 DLYLLVDGSGSIGYSNWVTHVVPFLHTFVQNLNISPDEINLYLVTFSTNAKELIRLSSPNSTNKDLALNAIRALLSLYYP 81 (186)
T ss_pred cEEEEEeCCCCccchhhHHHHHHHHHHHHHhcccCCCceEEEEEEecCCceEEEECCCccccchHHHHHHHHHHHhCcCC
Confidence 7999999999999887 9999999999999885 46799999999998865543221 123333334444443 346
Q ss_pred CCCCchHHHHHHHHHhhhcC----CCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHH
Q 007718 400 GGGTNILLPLKQAIKLLSDT----SESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQIL 475 (591)
Q Consensus 400 ~GgT~l~~aL~~a~~~l~~~----~~~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~L 475 (591)
+|+|++..||+.|.+.+... ++..+.|||+|||.+++.....+..++.. ..++.+++||+|.+.|..+|+.|
T Consensus 82 ~G~T~l~~aL~~a~~~l~~~~~~r~~~~~~villTDG~~~~~~~~~~~a~~l~----~~gv~v~~igiG~~~d~~~l~~i 157 (186)
T cd01471 82 NGSTNTTSALLVVEKHLFDTRGNRENAPQLVIIMTDGIPDSKFRTLKEARKLR----ERGVIIAVLGVGQGVNHEENRSL 157 (186)
T ss_pred CCCccHHHHHHHHHHHhhccCCCcccCceEEEEEccCCCCCCcchhHHHHHHH----HCCCEEEEEEeehhhCHHHHHHh
Confidence 79999999999999988652 34557899999999876655554444332 23589999999999999999999
Q ss_pred HHhC
Q 007718 476 AQIG 479 (591)
Q Consensus 476 A~~~ 479 (591)
|...
T Consensus 158 a~~~ 161 (186)
T cd01471 158 VGCD 161 (186)
T ss_pred cCCC
Confidence 9876
No 23
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain. Members of this family are bacterial domains that include a region related to the von Willebrand factor type A (VWFA) domain (pfam00092). These domains are restricted to, and have undergone a large paralogous family expansion in, the Acidobacteria, including Solibacter usitatus and Acidobacterium capsulatum ATCC 51196.
Probab=99.74 E-value=1.1e-16 Score=164.40 Aligned_cols=173 Identities=20% Similarity=0.217 Sum_probs=130.0
Q ss_pred cCceEEEEEeCCcCCCcchHHHHHHHHHHHHHh-cCCCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCCC---
Q 007718 324 FRKDVVFLVDVSGSMQGVLLEQTKNALSASLSK-LNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVA--- 399 (591)
Q Consensus 324 ~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~-L~~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~~--- 399 (591)
.|.+++||||+||||.+ ++..+++++..+++. ++++|+++|+.|+++.....+.. .+.+.+. +.|+.+.+
T Consensus 52 ~p~~vvlvlD~SgSM~~-~~~~a~~a~~~~l~~~l~~~d~v~lv~f~~~~~~~~~~t--~~~~~l~---~~l~~l~~~~~ 125 (296)
T TIGR03436 52 LPLTVGLVIDTSGSMRN-DLDRARAAAIRFLKTVLRPNDRVFVVTFNTRLRLLQDFT--SDPRLLE---AALNRLKPPLR 125 (296)
T ss_pred CCceEEEEEECCCCchH-HHHHHHHHHHHHHHhhCCCCCEEEEEEeCCceeEeecCC--CCHHHHH---HHHHhccCCCc
Confidence 47899999999999986 799999999999987 78899999999999987765432 3344444 44555555
Q ss_pred ------------CCCCchHHHHHHHH-HhhhcCC---CCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEc
Q 007718 400 ------------GGGTNILLPLKQAI-KLLSDTS---ESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGV 463 (591)
Q Consensus 400 ------------~GgT~l~~aL~~a~-~~l~~~~---~~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~Gi 463 (591)
+|+|+++.||..+. +++.... ...+.||++|||..+........+.+.+. ..++.||+||+
T Consensus 126 ~~~~~~~~~~~~~g~T~l~~al~~aa~~~~~~~~~~~p~rk~iIllTDG~~~~~~~~~~~~~~~~~---~~~v~vy~I~~ 202 (296)
T TIGR03436 126 TDYNSSGAFVRDGGGTALYDAITLAALEQLANALAGIPGRKALIVISDGGDNRSRDTLERAIDAAQ---RADVAIYSIDA 202 (296)
T ss_pred cccccccccccCCCcchhHHHHHHHHHHHHHHhhcCCCCCeEEEEEecCCCcchHHHHHHHHHHHH---HcCCEEEEecc
Confidence 79999999986664 4443322 13578999999998655433333333332 24599999999
Q ss_pred CCC-------------CCHHHHHHHHHhCCCEEEEcCCCCchHHHHHHHHHHhccc
Q 007718 464 GLY-------------CNHYFLQILAQIGRGYYDSAYDPGSVDYRIRRFFTAASSV 506 (591)
Q Consensus 464 G~~-------------~~~~lL~~LA~~~~G~~~~v~~~~~l~~~~~~~~~~~~~p 506 (591)
|.. .+...|+.||..|||.++++ +.+++...+.++...+.+.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~L~~iA~~TGG~~~~~-~~~~l~~~f~~i~~~~~~~ 257 (296)
T TIGR03436 203 RGLRAPDLGAGAKAGLGGPEALERLAEETGGRAFYV-NSNDLDGAFAQIAEELRSQ 257 (296)
T ss_pred CccccCCcccccccCCCcHHHHHHHHHHhCCeEecc-cCccHHHHHHHHHHHHhhe
Confidence 842 35789999999999999888 8888998888888776653
No 24
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=99.73 E-value=1e-16 Score=157.89 Aligned_cols=170 Identities=17% Similarity=0.181 Sum_probs=125.1
Q ss_pred CceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcC---CCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCCC-C
Q 007718 325 RKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLN---PQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVA-G 400 (591)
Q Consensus 325 ~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~---~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~~-~ 400 (591)
|.|++||||.|+||.+.+++++|+++..+++.|. ..+||+|+.|+++++..++.....+.+.+..++ +++.. +
T Consensus 2 ~~DlvfllD~S~Sm~~~~~~~~k~f~~~l~~~l~~~~~~~rvglv~fs~~~~~~~~l~~~~~~~~l~~~i---~~i~~~~ 78 (224)
T cd01475 2 PTDLVFLIDSSRSVRPENFELVKQFLNQIIDSLDVGPDATRVGLVQYSSTVKQEFPLGRFKSKADLKRAV---RRMEYLE 78 (224)
T ss_pred CccEEEEEeCCCCCCHHHHHHHHHHHHHHHHhcccCCCccEEEEEEecCceeEEecccccCCHHHHHHHH---HhCcCCC
Confidence 5799999999999999999999999999999885 367999999999998776654444555566654 44554 4
Q ss_pred CCCchHHHHHHHHHhhhc-----CCCC---ccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHH
Q 007718 401 GGTNILLPLKQAIKLLSD-----TSES---IPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFL 472 (591)
Q Consensus 401 GgT~l~~aL~~a~~~l~~-----~~~~---~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL 472 (591)
|+|+++.||+.+++.+.. +++. .+.+||+|||..++. +.+.++.. . ..+++||+||+|.. +...|
T Consensus 79 ~~t~tg~AL~~a~~~~~~~~~g~r~~~~~~~kvvillTDG~s~~~--~~~~a~~l-k---~~gv~i~~VgvG~~-~~~~L 151 (224)
T cd01475 79 TGTMTGLAIQYAMNNAFSEAEGARPGSERVPRVGIVVTDGRPQDD--VSEVAAKA-R---ALGIEMFAVGVGRA-DEEEL 151 (224)
T ss_pred CCChHHHHHHHHHHHhCChhcCCCCCCCCCCeEEEEEcCCCCccc--HHHHHHHH-H---HCCcEEEEEeCCcC-CHHHH
Confidence 889999999999876432 1222 578999999997653 22222222 2 23599999999984 88899
Q ss_pred HHHHHhCCC-EEEEcCCCCchHHHHHHHHHHhc
Q 007718 473 QILAQIGRG-YYDSAYDPGSVDYRIRRFFTAAS 504 (591)
Q Consensus 473 ~~LA~~~~G-~~~~v~~~~~l~~~~~~~~~~~~ 504 (591)
+.||..+++ +++.+.+.++++....++...+.
T Consensus 152 ~~ias~~~~~~~f~~~~~~~l~~~~~~l~~~~C 184 (224)
T cd01475 152 REIASEPLADHVFYVEDFSTIEELTKKFQGKIC 184 (224)
T ss_pred HHHhCCCcHhcEEEeCCHHHHHHHhhhcccccC
Confidence 999987654 66777776666655555554444
No 25
>cd01477 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of mo
Probab=99.72 E-value=2.3e-16 Score=150.97 Aligned_cols=158 Identities=16% Similarity=0.155 Sum_probs=117.7
Q ss_pred ccCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcCC---------CCeEEEEEeCCceEeeecCcccCCHHHHHHHHHH
Q 007718 323 VFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNP---------QDSFNIIAFNGETHLFSSSMKLASQGTIINATQW 393 (591)
Q Consensus 323 ~~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~~---------~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~ 393 (591)
....|++||||.|+||...+++.+|+.+..++..+.- ++|++||.|+++++..++.....+.+++..+++.
T Consensus 17 ~~~~DivfvlD~S~Sm~~~~f~~~k~fi~~~~~~~~~~~~~~~~~~~~rVGlV~fs~~a~~~~~L~d~~~~~~~~~ai~~ 96 (193)
T cd01477 17 NLWLDIVFVVDNSKGMTQGGLWQVRATISSLFGSSSQIGTDYDDPRSTRVGLVTYNSNATVVADLNDLQSFDDLYSQIQG 96 (193)
T ss_pred cceeeEEEEEeCCCCcchhhHHHHHHHHHHHHhhccccccccCCCCCcEEEEEEccCceEEEEecccccCHHHHHHHHHH
Confidence 4678999999999999988999999999988776542 5899999999999887776443455566555443
Q ss_pred -HhcCCCCCCCchHHHHHHHHHhhhcC-----CCCccEEEEEecCCCCCh-hhHHHHHHHHHhcCCCCCCeEEEEEcCCC
Q 007718 394 -LSSLVAGGGTNILLPLKQAIKLLSDT-----SESIPLIFLITDGTVGDE-RGICNEIKSYLTNTRSISPRICTFGVGLY 466 (591)
Q Consensus 394 -i~~l~~~GgT~l~~aL~~a~~~l~~~-----~~~~~~IillTDG~~~~~-~~i~~~v~~~~~~~~~~~~ri~t~GiG~~ 466 (591)
+..+..+|||++..||+.|.+++... ++..+++||||||..+.. .......+ .+. ..++.||+||+|.+
T Consensus 97 ~~~~~~~~ggT~ig~aL~~A~~~l~~~~~~~R~~v~kvvIllTDg~~~~~~~~~~~~a~-~l~---~~GI~i~tVGiG~~ 172 (193)
T cd01477 97 SLTDVSSTNASYLDTGLQAAEQMLAAGKRTSRENYKKVVIVFASDYNDEGSNDPRPIAA-RLK---STGIAIITVAFTQD 172 (193)
T ss_pred HhhccccCCcchHHHHHHHHHHHHHhhhccccCCCCeEEEEEecCccCCCCCCHHHHHH-HHH---HCCCEEEEEEeCCC
Confidence 22455668999999999999998642 334678999999865433 22322222 222 23699999999999
Q ss_pred CCHHHHHHHHHhCCCEEE
Q 007718 467 CNHYFLQILAQIGRGYYD 484 (591)
Q Consensus 467 ~~~~lL~~LA~~~~G~~~ 484 (591)
.|..+++.|++...+.+.
T Consensus 173 ~d~~~~~~L~~ias~~~~ 190 (193)
T cd01477 173 ESSNLLDKLGKIASPGMN 190 (193)
T ss_pred CCHHHHHHHHHhcCCCCC
Confidence 998888888887655443
No 26
>cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration. Integrins consist of an alpha and a beta sub-unit. Each sub-unit has a large extracellular portion, a single transmembrane segment and a short cytoplasmic domain. The N-terminal domains of the alpha and beta subunits associate to form the integrin headpiece, which contains the ligand binding site, whereas the C-terminal segments traverse the plasma membrane and mediate interaction with the cytoskeleton and with signalling proteins.The VWA domains present in the alpha subunits of integrins seem to be a chordate specific radiation of the gene family being found only in vertebrates. They mediate protein-protein interactions.
Probab=99.72 E-value=2.6e-16 Score=149.25 Aligned_cols=159 Identities=19% Similarity=0.210 Sum_probs=119.1
Q ss_pred eEEEEEeCCcCCCcchHHHHHHHHHHHHHhcCC---CCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCC-CCCC
Q 007718 327 DVVFLVDVSGSMQGVLLEQTKNALSASLSKLNP---QDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLV-AGGG 402 (591)
Q Consensus 327 ~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~~---~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~-~~Gg 402 (591)
|++|+||.|+||.+..++.+|+.+..+++.|.. +.||+++.|++++....+.....+..++.++ ++.+. .+|+
T Consensus 2 Di~fvlD~S~S~~~~~f~~~k~fi~~~i~~l~~~~~~~rvgvv~fs~~~~~~~~l~~~~~~~~~~~~---i~~~~~~~g~ 78 (177)
T cd01469 2 DIVFVLDGSGSIYPDDFQKVKNFLSTVMKKLDIGPTKTQFGLVQYSESFRTEFTLNEYRTKEEPLSL---VKHISQLLGL 78 (177)
T ss_pred cEEEEEeCCCCCCHHHHHHHHHHHHHHHHHcCcCCCCcEEEEEEECCceeEEEecCccCCHHHHHHH---HHhCccCCCC
Confidence 799999999999988999999999999998863 6899999999998876654433444444444 55554 3588
Q ss_pred CchHHHHHHHHHhhhc-----CCCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCC----HHHHH
Q 007718 403 TNILLPLKQAIKLLSD-----TSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCN----HYFLQ 473 (591)
Q Consensus 403 T~l~~aL~~a~~~l~~-----~~~~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~----~~lL~ 473 (591)
|+++.||+.|.+.+.. +++..+.+|++|||..++.....+.++ .+. ..++.||++|+|...+ ...|+
T Consensus 79 T~~~~AL~~a~~~l~~~~~g~R~~~~kv~illTDG~~~~~~~~~~~~~-~~k---~~gv~v~~Vgvg~~~~~~~~~~~L~ 154 (177)
T cd01469 79 TNTATAIQYVVTELFSESNGARKDATKVLVVITDGESHDDPLLKDVIP-QAE---REGIIRYAIGVGGHFQRENSREELK 154 (177)
T ss_pred ccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEeCCCCCCccccHHHHH-HHH---HCCcEEEEEEecccccccccHHHHH
Confidence 9999999999987632 234567999999999986553322222 222 2359999999998764 68899
Q ss_pred HHHHhCCCE-EEEcCCCCch
Q 007718 474 ILAQIGRGY-YDSAYDPGSV 492 (591)
Q Consensus 474 ~LA~~~~G~-~~~v~~~~~l 492 (591)
.||+.+++. ++.+.+.+++
T Consensus 155 ~ias~p~~~h~f~~~~~~~l 174 (177)
T cd01469 155 TIASKPPEEHFFNVTDFAAL 174 (177)
T ss_pred HHhcCCcHHhEEEecCHHHh
Confidence 999998764 4556665544
No 27
>cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=99.70 E-value=4.9e-16 Score=143.48 Aligned_cols=145 Identities=27% Similarity=0.283 Sum_probs=109.3
Q ss_pred ceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcC-CCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCCCCCCCc
Q 007718 326 KDVVFLVDVSGSMQGVLLEQTKNALSASLSKLN-PQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAGGGTN 404 (591)
Q Consensus 326 ~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~-~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~~~GgT~ 404 (591)
++++|++|+||||.+.++..++.++..++..+. .+++++++.|+++.... . .....+..++.+++..+.++|||+
T Consensus 1 ~~v~illD~SgSM~~~k~~~a~~~~~~l~~~~~~~~~~v~li~F~~~~~~~-~---~~~~~~~~~~~~~l~~~~~~ggT~ 76 (152)
T cd01462 1 GPVILLVDQSGSMYGAPEEVAKAVALALLRIALAENRDTYLILFDSEFQTK-I---VDKTDDLEEPVEFLSGVQLGGGTD 76 (152)
T ss_pred CCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHcCCcEEEEEeCCCceEE-e---cCCcccHHHHHHHHhcCCCCCCcC
Confidence 479999999999999899999999988888776 48999999999994332 1 123456777788888888899999
Q ss_pred hHHHHHHHHHhhhcCCCCccEEEEEecCCC-CChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHh
Q 007718 405 ILLPLKQAIKLLSDTSESIPLIFLITDGTV-GDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQI 478 (591)
Q Consensus 405 l~~aL~~a~~~l~~~~~~~~~IillTDG~~-~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~LA~~ 478 (591)
+..+|..+++.+.........||++|||.. ....... ...+... ..+++||++|+|++.|..+++..|+.
T Consensus 77 l~~al~~a~~~l~~~~~~~~~ivliTDG~~~~~~~~~~-~~~~~~~---~~~~~v~~~~~g~~~~~~~~~~~~~~ 147 (152)
T cd01462 77 INKALRYALELIERRDPRKADIVLITDGYEGGVSDELL-REVELKR---SRVARFVALALGDHGNPGYDRISAED 147 (152)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCHHHH-HHHHHHH---hcCcEEEEEEecCCCCchHHHHhhhh
Confidence 999999999998764444568999999963 3333332 1122221 23589999999999888866655554
No 28
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=99.69 E-value=9.8e-16 Score=143.42 Aligned_cols=147 Identities=18% Similarity=0.173 Sum_probs=111.5
Q ss_pred eEEEEEeCCcCCCcchHHHHHHHHHHHHHhcC---CCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCC-CCCC
Q 007718 327 DVVFLVDVSGSMQGVLLEQTKNALSASLSKLN---PQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLV-AGGG 402 (591)
Q Consensus 327 ~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~---~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~-~~Gg 402 (591)
|++||+|.|+||.+..++.+|+++..+++.+. ++++++|+.|++++....+.... .+.+.+.+.++.+. .+|+
T Consensus 2 Dv~~vlD~S~Sm~~~~~~~~k~~~~~l~~~~~~~~~~~rvgli~fs~~~~~~~~l~~~---~~~~~l~~~l~~~~~~~g~ 78 (164)
T cd01482 2 DIVFLVDGSWSIGRSNFNLVRSFLSSVVEAFEIGPDGVQVGLVQYSDDPRTEFDLNAY---TSKEDVLAAIKNLPYKGGN 78 (164)
T ss_pred CEEEEEeCCCCcChhhHHHHHHHHHHHHhheeeCCCceEEEEEEECCCeeEEEecCCC---CCHHHHHHHHHhCcCCCCC
Confidence 79999999999998899999999999998874 57899999999998765543222 33455666677776 4689
Q ss_pred CchHHHHHHHHHhhhc-----CCCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHH
Q 007718 403 TNILLPLKQAIKLLSD-----TSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQ 477 (591)
Q Consensus 403 T~l~~aL~~a~~~l~~-----~~~~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~LA~ 477 (591)
|+++.||+.+.+.+.. .++..+.||++|||..++. +.+ +.+.+. ..++.||+||+|.. +...|+.||.
T Consensus 79 T~~~~aL~~a~~~~~~~~~~~r~~~~k~iillTDG~~~~~--~~~-~a~~lk---~~gi~i~~ig~g~~-~~~~L~~ia~ 151 (164)
T cd01482 79 TRTGKALTHVREKNFTPDAGARPGVPKVVILITDGKSQDD--VEL-PARVLR---NLGVNVFAVGVKDA-DESELKMIAS 151 (164)
T ss_pred ChHHHHHHHHHHHhcccccCCCCCCCEEEEEEcCCCCCch--HHH-HHHHHH---HCCCEEEEEecCcC-CHHHHHHHhC
Confidence 9999999998876432 2345678999999998653 112 222222 24699999999984 6889999999
Q ss_pred hCCCEE
Q 007718 478 IGRGYY 483 (591)
Q Consensus 478 ~~~G~~ 483 (591)
.+...+
T Consensus 152 ~~~~~~ 157 (164)
T cd01482 152 KPSETH 157 (164)
T ss_pred CCchhe
Confidence 876544
No 29
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=99.69 E-value=7.7e-16 Score=142.84 Aligned_cols=148 Identities=21% Similarity=0.229 Sum_probs=115.8
Q ss_pred eEEEEEeCCcCCCcchHHHHHHHHHHHHHhcC---CCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCCCC-C-
Q 007718 327 DVVFLVDVSGSMQGVLLEQTKNALSASLSKLN---PQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAG-G- 401 (591)
Q Consensus 327 ~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~---~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~~~-G- 401 (591)
|++||+|+||||.+.+++.+++++..++..+. ++++++|+.|+++.....+..... +..+..+.++.+... |
T Consensus 2 di~~llD~S~Sm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~f~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~ 78 (161)
T cd01450 2 DIVFLLDGSESVGPENFEKVKDFIEKLVEKLDIGPDKTRVGLVQYSDDVRVEFSLNDYK---SKDDLLKAVKNLKYLGGG 78 (161)
T ss_pred cEEEEEeCCCCcCHHHHHHHHHHHHHHHHheeeCCCceEEEEEEEcCCceEEEECCCCC---CHHHHHHHHHhcccCCCC
Confidence 79999999999998899999999999998886 489999999999877655433222 344555666666544 3
Q ss_pred CCchHHHHHHHHHhhhcCC----CCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHH
Q 007718 402 GTNILLPLKQAIKLLSDTS----ESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQ 477 (591)
Q Consensus 402 gT~l~~aL~~a~~~l~~~~----~~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~LA~ 477 (591)
+|++..||..+.+.+.... +..+.+||+|||..++.....+.++.... .++++++||+|. .+...|+.||.
T Consensus 79 ~t~~~~al~~a~~~~~~~~~~~~~~~~~iiliTDG~~~~~~~~~~~~~~~~~----~~v~v~~i~~g~-~~~~~l~~la~ 153 (161)
T cd01450 79 GTNTGKALQYALEQLFSESNARENVPKVIIVLTDGRSDDGGDPKEAAAKLKD----EGIKVFVVGVGP-ADEEELREIAS 153 (161)
T ss_pred CccHHHHHHHHHHHhcccccccCCCCeEEEEECCCCCCCCcchHHHHHHHHH----CCCEEEEEeccc-cCHHHHHHHhC
Confidence 8999999999999987653 56679999999998775544444444322 359999999999 78999999999
Q ss_pred hCCCE
Q 007718 478 IGRGY 482 (591)
Q Consensus 478 ~~~G~ 482 (591)
.+++.
T Consensus 154 ~~~~~ 158 (161)
T cd01450 154 CPSER 158 (161)
T ss_pred CCCCC
Confidence 98443
No 30
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional
Probab=99.69 E-value=1.4e-15 Score=162.76 Aligned_cols=180 Identities=22% Similarity=0.249 Sum_probs=132.8
Q ss_pred cCceEEEEEeCCcCCCcch-HHHHHHHHHHHHHhcCC---CCeEEEEEeCCceEeeecCcccC--CHHHHHHHHHHHh-c
Q 007718 324 FRKDVVFLVDVSGSMQGVL-LEQTKNALSASLSKLNP---QDSFNIIAFNGETHLFSSSMKLA--SQGTIINATQWLS-S 396 (591)
Q Consensus 324 ~~~~ivfviD~SgSM~g~~-i~~ak~al~~~l~~L~~---~d~f~Ii~F~~~~~~~~~~~~~~--~~~~~~~a~~~i~-~ 396 (591)
...+++||||.|+||.... ++.+|.++..++..+.. ..+++++.|++....+++..... +.+.+..++..+. .
T Consensus 41 ~~lDIvFLLD~SgSMg~~Nfle~AK~Fa~~LV~~l~Is~D~V~VgiV~FSd~~r~vfpL~s~~s~Dk~~aL~~I~sL~~~ 120 (576)
T PTZ00441 41 EEVDLYLLVDGSGSIGYHNWITHVIPMLMGLIQQLNLSDDAINLYMSLFSNNTTELIRLGSGASKDKEQALIIVKSLRKT 120 (576)
T ss_pred CCceEEEEEeCCCccCCccHHHHHHHHHHHHHHHhccCCCceEEEEEEeCCCceEEEecCCCccccHHHHHHHHHHHHhh
Confidence 4679999999999997544 47899999999998853 34555699999988766543222 2334444444333 4
Q ss_pred CCCCCCCchHHHHHHHHHhhhcC---CCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHH
Q 007718 397 LVAGGGTNILLPLKQAIKLLSDT---SESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQ 473 (591)
Q Consensus 397 l~~~GgT~l~~aL~~a~~~l~~~---~~~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~ 473 (591)
+..+|+|++..||..+.+.+... .+..+.|||||||..++.....+.++.. . ..++.|++||||.+.+..+|+
T Consensus 121 ~~pgGgTnig~AL~~Aae~L~sr~~R~nvpKVVILLTDG~sns~~dvleaAq~L-R---~~GVeI~vIGVG~g~n~e~Lr 196 (576)
T PTZ00441 121 YLPYGKTNMTDALLEVRKHLNDRVNRENAIQLVILMTDGIPNSKYRALEESRKL-K---DRNVKLAVIGIGQGINHQFNR 196 (576)
T ss_pred ccCCCCccHHHHHHHHHHHHhhcccccCCceEEEEEecCCCCCcccHHHHHHHH-H---HCCCEEEEEEeCCCcCHHHHH
Confidence 55679999999999998887643 3455799999999986544444444333 2 235899999999999999999
Q ss_pred HHH----HhCCCEEEEcCCCCchHHHHHHHHHHhccce
Q 007718 474 ILA----QIGRGYYDSAYDPGSVDYRIRRFFTAASSVF 507 (591)
Q Consensus 474 ~LA----~~~~G~~~~v~~~~~l~~~~~~~~~~~~~p~ 507 (591)
.|| ..++|.++.+.+.+++...+..++++++..+
T Consensus 197 lIAgC~p~~g~c~~Y~vadf~eL~~ivk~LikkVC~ev 234 (576)
T PTZ00441 197 LLAGCRPREGKCKFYSDADWEEAKNLIKPFIAKVCTEV 234 (576)
T ss_pred HHhccCCCCCCCceEEeCCHHHHHHHHHHHHHHhcccc
Confidence 999 3466788888888888888888888877654
No 31
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases. Denitrification plays a major role in completing the nitrogen cycle by converting nitrate or nitrite to nitrogen gas. The pathway for microbial denitrification has been established as NO3- ------ NO2- ------ NO ------- N2O --------- N2. This reaction generally occurs under oxygen limiting conditions. Genetic and biochemical studies have shown that the first srep of the biochemical pathway is catalyzed by periplasmic nitrate reductases. This family is widely present in proteobacteria and firmicutes. This version of the domain is also present in some archaeal members. The function of the vWA domain in this sub-group is not known. Members of this subgroup have a conserved MIDAS motif.
Probab=99.69 E-value=5.8e-16 Score=146.46 Aligned_cols=141 Identities=19% Similarity=0.252 Sum_probs=103.2
Q ss_pred eEEEEEeCCcCCCc-chHHHHHHHHHHHHHhcCC-CCeEEEEEeCCce--E---eeecCcccCCHHHHHHHHHHHhcCCC
Q 007718 327 DVVFLVDVSGSMQG-VLLEQTKNALSASLSKLNP-QDSFNIIAFNGET--H---LFSSSMKLASQGTIINATQWLSSLVA 399 (591)
Q Consensus 327 ~ivfviD~SgSM~g-~~i~~ak~al~~~l~~L~~-~d~f~Ii~F~~~~--~---~~~~~~~~~~~~~~~~a~~~i~~l~~ 399 (591)
.++|+||+||||.+ .+++.+|+++..++..+.. +|+|+|+.|++.. . .+.. ....+......+.+.+..+.+
T Consensus 2 ~v~~llD~SgSM~~~~kl~~ak~a~~~l~~~l~~~~d~~~l~~F~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~ 80 (174)
T cd01454 2 AVTLLLDLSGSMRSDRRIDVAKKAAVLLAEALEACGVPHAILGFTTDAGGRERVRWIK-IKDFDESLHERARKRLAALSP 80 (174)
T ss_pred EEEEEEECCCCCCCCcHHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCCccceEEEE-ecCcccccchhHHHHHHccCC
Confidence 47899999999998 5999999999999988875 9999999999873 1 1211 012222222345666788888
Q ss_pred CCCCchHHHHHHHHHhhhcCCCCccEEEEEecCCCCChhh------HHHHHHHHHhcCCCCCCeEEEEEcCCCCC
Q 007718 400 GGGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVGDERG------ICNEIKSYLTNTRSISPRICTFGVGLYCN 468 (591)
Q Consensus 400 ~GgT~l~~aL~~a~~~l~~~~~~~~~IillTDG~~~~~~~------i~~~v~~~~~~~~~~~~ri~t~GiG~~~~ 468 (591)
+|+|+++.||..+.+.+...+...+.||++|||.+++... .++...+...+....++++|++|+|.+.+
T Consensus 81 ~g~T~~~~al~~a~~~l~~~~~~~~~iiliTDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~igig~~~~ 155 (174)
T cd01454 81 GGNTRDGAAIRHAAERLLARPEKRKILLVISDGEPNDLDYYEGNVFATEDALRAVIEARKLGIEVFGITIDRDAT 155 (174)
T ss_pred CCCCcHHHHHHHHHHHHhcCCCcCcEEEEEeCCCcCcccccCcchhHHHHHHHHHHHHHhCCcEEEEEEecCccc
Confidence 8999999999999999877666778999999999875321 12222111222223469999999999876
No 32
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=99.67 E-value=1.8e-15 Score=166.53 Aligned_cols=160 Identities=23% Similarity=0.264 Sum_probs=124.9
Q ss_pred CccCceEEEEEeCCcCCCcchHHHHHHHHHHHHHh-cCCCCeEEEEEeCCc-eEeeecCcccCCHHHHHHHHHHHhcCCC
Q 007718 322 KVFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSK-LNPQDSFNIIAFNGE-THLFSSSMKLASQGTIINATQWLSSLVA 399 (591)
Q Consensus 322 ~~~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~-L~~~d~f~Ii~F~~~-~~~~~~~~~~~~~~~~~~a~~~i~~l~~ 399 (591)
...+..++||||+||||.+.+|..+|.++..+|.. +.+.|+++||.|+++ +.+..+. +. ++..+.++|+.+.+
T Consensus 398 ~~~~~~vvfvvD~SGSM~~~rl~~aK~a~~~ll~~ay~~rD~v~lI~F~g~~a~~~lpp----T~-~~~~~~~~L~~l~~ 472 (584)
T PRK13406 398 QRSETTTIFVVDASGSAALHRLAEAKGAVELLLAEAYVRRDQVALVAFRGRGAELLLPP----TR-SLVRAKRSLAGLPG 472 (584)
T ss_pred ccCCccEEEEEECCCCCcHhHHHHHHHHHHHHHHhhcCCCCEEEEEEECCCceeEEcCC----Cc-CHHHHHHHHhcCCC
Confidence 35678999999999999999999999999999865 678999999999765 6654432 22 66777888999999
Q ss_pred CCCCchHHHHHHHHHhhhcC--CCCccEEEEEecCCCCChh--------hHH--HHHHHHHhcCCCCCCeEEEEEcCCCC
Q 007718 400 GGGTNILLPLKQAIKLLSDT--SESIPLIFLITDGTVGDER--------GIC--NEIKSYLTNTRSISPRICTFGVGLYC 467 (591)
Q Consensus 400 ~GgT~l~~aL~~a~~~l~~~--~~~~~~IillTDG~~~~~~--------~i~--~~v~~~~~~~~~~~~ri~t~GiG~~~ 467 (591)
+|||+|+.||..|++.+... ++..+.|||+|||..+... ... ..+...+ ...++++++|++|...
T Consensus 473 gGgTpL~~gL~~A~~~l~~~~~~~~~~~iVLlTDG~~n~~~~~~~~~~~~~~~~~~~a~~~---~~~gi~~~vId~g~~~ 549 (584)
T PRK13406 473 GGGTPLAAGLDAAAALALQVRRKGMTPTVVLLTDGRANIARDGTAGRAQAEEDALAAARAL---RAAGLPALVIDTSPRP 549 (584)
T ss_pred CCCChHHHHHHHHHHHHHHhccCCCceEEEEEeCCCCCCCccccccccchhhHHHHHHHHH---HhcCCeEEEEecCCCC
Confidence 99999999999999987543 3456899999999987421 011 1112222 2345899999999764
Q ss_pred CHHHHHHHHHhCCCEEEEcCCCC
Q 007718 468 NHYFLQILAQIGRGYYDSAYDPG 490 (591)
Q Consensus 468 ~~~lL~~LA~~~~G~~~~v~~~~ 490 (591)
..+++.||+.++|.|+.+.+.+
T Consensus 550 -~~~~~~LA~~~gg~y~~l~~~~ 571 (584)
T PRK13406 550 -QPQARALAEAMGARYLPLPRAD 571 (584)
T ss_pred -cHHHHHHHHhcCCeEEECCCCC
Confidence 4578999999999999988754
No 33
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=99.67 E-value=5.5e-15 Score=141.72 Aligned_cols=172 Identities=15% Similarity=0.143 Sum_probs=120.8
Q ss_pred eEEEEEeCCcCCCcchHH-HHHHHHHHHHHhcC---CCCeEEEEEeCCceEeeecCcc--cCCHHHHHHHHHHHhc-CCC
Q 007718 327 DVVFLVDVSGSMQGVLLE-QTKNALSASLSKLN---PQDSFNIIAFNGETHLFSSSMK--LASQGTIINATQWLSS-LVA 399 (591)
Q Consensus 327 ~ivfviD~SgSM~g~~i~-~ak~al~~~l~~L~---~~d~f~Ii~F~~~~~~~~~~~~--~~~~~~~~~a~~~i~~-l~~ 399 (591)
|++|+||.|+||....++ ..++.++.+++.|. .++|++|+.|++.++...+... ..+.+.+..+++.+.. ...
T Consensus 2 Di~fllD~S~Si~~~~f~~~~~~f~~~lv~~l~i~~~~~rvgvv~fs~~~~~~~~~~~~~~~~~~~l~~~i~~l~~~~~~ 81 (192)
T cd01473 2 DLTLILDESASIGYSNWRKDVIPFTEKIINNLNISKDKVHVGILLFAEKNRDVVPFSDEERYDKNELLKKINDLKNSYRS 81 (192)
T ss_pred cEEEEEeCCCcccHHHHHHHHHHHHHHHHHhCccCCCccEEEEEEecCCceeEEecCcccccCHHHHHHHHHHHHhccCC
Confidence 799999999999877787 48999999999885 4689999999999876555332 2334455555544442 334
Q ss_pred CCCCchHHHHHHHHHhhhcCC----CCccEEEEEecCCCCChh--hHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHH
Q 007718 400 GGGTNILLPLKQAIKLLSDTS----ESIPLIFLITDGTVGDER--GICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQ 473 (591)
Q Consensus 400 ~GgT~l~~aL~~a~~~l~~~~----~~~~~IillTDG~~~~~~--~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~ 473 (591)
+|+|++..||+.|.+.+.... +..+.+||+|||..++.. .+.+..+ .+. ..++.+|++|+|.. +...|+
T Consensus 82 ~g~T~~~~AL~~a~~~~~~~~~~r~~~~kv~IllTDG~s~~~~~~~~~~~a~-~lk---~~gV~i~~vGiG~~-~~~el~ 156 (192)
T cd01473 82 GGETYIVEALKYGLKNYTKHGNRRKDAPKVTMLFTDGNDTSASKKELQDISL-LYK---EENVKLLVVGVGAA-SENKLK 156 (192)
T ss_pred CCcCcHHHHHHHHHHHhccCCCCcccCCeEEEEEecCCCCCcchhhHHHHHH-HHH---HCCCEEEEEEeccc-cHHHHH
Confidence 699999999999998875432 236789999999987532 2322222 222 23699999999985 677899
Q ss_pred HHHHhC--CC--EEEEcCCCCchHHHHHHHHHHh
Q 007718 474 ILAQIG--RG--YYDSAYDPGSVDYRIRRFFTAA 503 (591)
Q Consensus 474 ~LA~~~--~G--~~~~v~~~~~l~~~~~~~~~~~ 503 (591)
.||... .+ .+++..+.+++......+..++
T Consensus 157 ~ia~~~~~~~~~~~~~~~~f~~l~~~~~~l~~~i 190 (192)
T cd01473 157 LLAGCDINNDNCPNVIKTEWNNLNGISKFLTDKI 190 (192)
T ss_pred HhcCCCCCCCCCCeEEecchhhHHHHHHHHHhhc
Confidence 999862 22 2333345777766655555544
No 34
>PF00092 VWA: von Willebrand factor type A domain; InterPro: IPR002035 The von Willebrand factor is a large multimeric glycoprotein found in blood plasma. Mutant forms are involved in the aetiology of bleeding disorders []. In von Willebrand factor, the type A domain (vWF) is the prototype for a protein superfamily. The vWF domain is found in various plasma proteins: complement factors B, C2, CR3 and CR4; the integrins (I-domains); collagen types VI, VII, XII and XIV; and other extracellular proteins [, , ]. Although the majority of VWA-containing proteins are extracellular, the most ancient ones present in all eukaryotes are all intracellular proteins involved in functions such as transcription, DNA repair, ribosomal and membrane transport and the proteasome. A common feature appears to be involvement in multiprotein complexes. Proteins that incorporate vWF domains participate in numerous biological events (e.g. cell adhesion, migration, homing, pattern formation, and signal transduction), involving interaction with a large array of ligands []. A number of human diseases arise from mutations in VWA domains. Secondary structure prediction from 75 aligned vWF sequences has revealed a largely alternating sequence of alpha-helices and beta-strands []. Fold recognition algorithms were used to score sequence compatibility with a library of known structures: the vWF domain fold was predicted to be a doubly-wound, open, twisted beta-sheet flanked by alpha-helices []. 3D structures have been determined for the I-domains of integrins CD11b (with bound magnesium) [] and CD11a (with bound manganese) []. The domain adopts a classic alpha/beta Rossmann fold and contains an unusual metal ion coordination site at its surface. It has been suggested that this site represents a general metal ion-dependent adhesion site (MIDAS) for binding protein ligands []. The residues constituting the MIDAS motif in the CD11b and CD11a I-domains are completely conserved, but the manner in which the metal ion is coordinated differs slightly [].; GO: 0005515 protein binding; PDB: 2XGG_B 3ZQK_B 3GXB_A 3PPV_A 3PPX_A 3PPW_A 3PPY_A 1CQP_B 3TCX_B 2ICA_A ....
Probab=99.66 E-value=2e-15 Score=142.63 Aligned_cols=166 Identities=29% Similarity=0.368 Sum_probs=121.8
Q ss_pred eEEEEEeCCcCCCcchHHHHHHHHHHHHHhc---CCCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcC-CCCCC
Q 007718 327 DVVFLVDVSGSMQGVLLEQTKNALSASLSKL---NPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSL-VAGGG 402 (591)
Q Consensus 327 ~ivfviD~SgSM~g~~i~~ak~al~~~l~~L---~~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l-~~~Gg 402 (591)
||+||||.|+||.+..++.+|+++..+++.+ +.+.||+++.|++......+.....+.+.+..++ ...+ ..+|+
T Consensus 1 DivflvD~S~sm~~~~~~~~~~~v~~~i~~~~~~~~~~rv~iv~f~~~~~~~~~~~~~~~~~~~~~~i--~~~~~~~~g~ 78 (178)
T PF00092_consen 1 DIVFLVDTSGSMSGDNFEKAKQFVKSIISRLSISNNGTRVGIVTFSDSARVLFSLTDYQSKNDLLNAI--NDSIPSSGGG 78 (178)
T ss_dssp EEEEEEE-STTSCHHHHHHHHHHHHHHHHHSTBSTTSEEEEEEEESSSEEEEEETTSHSSHHHHHHHH--HTTGGCCBSS
T ss_pred CEEEEEeCCCCCchHHHHHHHHHHHHHHHhhhccccccccceeeeecccccccccccccccccccccc--cccccccchh
Confidence 7999999999999989999999999999966 4588999999999998766544333444444443 1433 44599
Q ss_pred CchHHHHHHHHHhhhcC-----CCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHH
Q 007718 403 TNILLPLKQAIKLLSDT-----SESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQ 477 (591)
Q Consensus 403 T~l~~aL~~a~~~l~~~-----~~~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~LA~ 477 (591)
|++..||+.+.+.+... ++..+.+|++|||.+++.............. .++.++++|+ ..++...|+.||.
T Consensus 79 t~~~~aL~~a~~~l~~~~~~~r~~~~~~iiliTDG~~~~~~~~~~~~~~~~~~---~~i~~~~ig~-~~~~~~~l~~la~ 154 (178)
T PF00092_consen 79 TNLGAALKFAREQLFSSNNGGRPNSPKVIILITDGNSNDSDSPSEEAANLKKS---NGIKVIAIGI-DNADNEELRELAS 154 (178)
T ss_dssp B-HHHHHHHHHHHTTSGGGTTGTTSEEEEEEEESSSSSSHSGHHHHHHHHHHH---CTEEEEEEEE-SCCHHHHHHHHSH
T ss_pred hhHHHHHhhhhhcccccccccccccccceEEEEeecccCCcchHHHHHHHHHh---cCcEEEEEec-CcCCHHHHHHHhC
Confidence 99999999999998654 5667799999999998775444443333322 2466666666 4678999999997
Q ss_pred hC--CCEEEEcCCCCchHHHHHH
Q 007718 478 IG--RGYYDSAYDPGSVDYRIRR 498 (591)
Q Consensus 478 ~~--~G~~~~v~~~~~l~~~~~~ 498 (591)
.+ .+++.++.+..++.+..++
T Consensus 155 ~~~~~~~~~~~~~~~~l~~~~~~ 177 (178)
T PF00092_consen 155 CPTSEGHVFYLADFSDLSQIIQQ 177 (178)
T ss_dssp SSTCHHHEEEESSHHHHHHHHHH
T ss_pred CCCCCCcEEEcCCHHHHHHHHhc
Confidence 64 3677888887777655543
No 35
>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions. Because of their involvement in many biologically important adhesion processes, integrins are conserved across a wide range of multicellular animals. Integrins from invertebrates have been identified from six phyla. There are no data to date to suggest any immunological functions for the invertebrate integrins. The members of this sub-group have the conserved MIDAS motif that is charateristic of this domain suggesting the involvement of the integrins in the recognition and binding of multi-ligands.
Probab=99.65 E-value=6.6e-15 Score=137.54 Aligned_cols=146 Identities=18% Similarity=0.224 Sum_probs=107.0
Q ss_pred eEEEEEeCCcCCCcchHHHHHHHHHHHHHhcCC---CCeEEEEEeCC--ceEeeecCcccCCHHHHHHHHHHHhcCCC-C
Q 007718 327 DVVFLVDVSGSMQGVLLEQTKNALSASLSKLNP---QDSFNIIAFNG--ETHLFSSSMKLASQGTIINATQWLSSLVA-G 400 (591)
Q Consensus 327 ~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~~---~d~f~Ii~F~~--~~~~~~~~~~~~~~~~~~~a~~~i~~l~~-~ 400 (591)
|++|++|+|+||.+ .++..|+++..++..|.. .++++++.|++ +.....+.....+ .+.+.+.|+.+.. +
T Consensus 2 dv~~llD~S~Sm~~-~~~~~~~~~~~~~~~l~~~~~~~~v~lv~f~~~~~~~~~~~l~~~~~---~~~l~~~i~~l~~~g 77 (163)
T cd01476 2 DLLFVLDSSGSVRG-KFEKYKKYIERIVEGLEIGPTATRVALITYSGRGRQRVRFNLPKHND---GEELLEKVDNLRFIG 77 (163)
T ss_pred CEEEEEeCCcchhh-hHHHHHHHHHHHHHhcCCCCCCcEEEEEEEcCCCceEEEecCCCCCC---HHHHHHHHHhCccCC
Confidence 78999999999986 688889999999988864 89999999999 4544443222223 3445556777775 5
Q ss_pred CCCchHHHHHHHHHhhhc----CCCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCC--CCHHHHHH
Q 007718 401 GGTNILLPLKQAIKLLSD----TSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLY--CNHYFLQI 474 (591)
Q Consensus 401 GgT~l~~aL~~a~~~l~~----~~~~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~--~~~~lL~~ 474 (591)
|+|++..||+.+.+++.. .++..+.++++|||..++.. .... +.+.. ..++.+|+||+|+. .|...|+.
T Consensus 78 g~T~l~~aL~~a~~~l~~~~~~r~~~~~~villTDG~~~~~~--~~~~-~~l~~--~~~v~v~~vg~g~~~~~~~~~L~~ 152 (163)
T cd01476 78 GTTATGAAIEVALQQLDPSEGRREGIPKVVVVLTDGRSHDDP--EKQA-RILRA--VPNIETFAVGTGDPGTVDTEELHS 152 (163)
T ss_pred CCccHHHHHHHHHHHhccccCCCCCCCeEEEEECCCCCCCch--HHHH-HHHhh--cCCCEEEEEECCCccccCHHHHHH
Confidence 889999999999999852 23345789999999986432 1111 12222 24589999999998 89888998
Q ss_pred HHHhCCC
Q 007718 475 LAQIGRG 481 (591)
Q Consensus 475 LA~~~~G 481 (591)
||.....
T Consensus 153 ia~~~~~ 159 (163)
T cd01476 153 ITGNEDH 159 (163)
T ss_pred HhCCCcc
Confidence 8766553
No 36
>smart00327 VWA von Willebrand factor (vWF) type A domain. VWA domains in extracellular eukaryotic proteins mediate adhesion via metal ion-dependent adhesion sites (MIDAS). Intracellular VWA domains and homologues in prokaryotes have recently been identified. The proposed VWA domains in integrin beta subunits have recently been substantiated using sequence-based methods.
Probab=99.62 E-value=2.2e-14 Score=134.98 Aligned_cols=154 Identities=27% Similarity=0.319 Sum_probs=122.4
Q ss_pred CceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcCC---CCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCCC--
Q 007718 325 RKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNP---QDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVA-- 399 (591)
Q Consensus 325 ~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~~---~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~~-- 399 (591)
|.+++|++|.|+||.+.+++.+++++..++..+.. +++++|+.|++....+.+.. ...+...+...++.+..
T Consensus 1 ~~~v~l~vD~S~SM~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ii~f~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~ 77 (177)
T smart00327 1 PLDVVFLLDGSGSMGPNRFEKAKEFVLKLVEQLDIGPDGDRVGLVTFSDDATVLFPLN---DSRSKDALLEALASLSYKL 77 (177)
T ss_pred CccEEEEEeCCCccchHHHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCCceEEEccc---ccCCHHHHHHHHHhcCCCC
Confidence 57899999999999989999999999999998876 89999999999877665432 23344556666777774
Q ss_pred CCCCchHHHHHHHHHhhhcC-----CCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHH
Q 007718 400 GGGTNILLPLKQAIKLLSDT-----SESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQI 474 (591)
Q Consensus 400 ~GgT~l~~aL~~a~~~l~~~-----~~~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~ 474 (591)
+|+|++..+|+.+.+.+... .+..+.|+++|||..++.....+.++.... .++.+++||+|...+...|+.
T Consensus 78 ~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~iviitDg~~~~~~~~~~~~~~~~~----~~i~i~~i~~~~~~~~~~l~~ 153 (177)
T smart00327 78 GGGTNLGAALQYALENLFSKSAGSRRGAPKVLILITDGESNDGGDLLKAAKELKR----SGVKVFVVGVGNDVDEEELKK 153 (177)
T ss_pred CCCchHHHHHHHHHHHhcCcCCCCCCCCCeEEEEEcCCCCCCCccHHHHHHHHHH----CCCEEEEEEccCccCHHHHHH
Confidence 69999999999999987521 122568999999998865445455444432 248999999998878999999
Q ss_pred HHHhCCCEEEE
Q 007718 475 LAQIGRGYYDS 485 (591)
Q Consensus 475 LA~~~~G~~~~ 485 (591)
++..++|.|.+
T Consensus 154 ~~~~~~~~~~~ 164 (177)
T smart00327 154 LASAPGGVYVF 164 (177)
T ss_pred HhCCCcceEEe
Confidence 99999999876
No 37
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=99.62 E-value=2.4e-14 Score=134.21 Aligned_cols=168 Identities=15% Similarity=0.089 Sum_probs=115.9
Q ss_pred ceEEEEEeCCcCCC------c---chHHHHHHHHHHHHH--hcCCCCeEEEEEeCCceEeeec----CcccCCHHHHHHH
Q 007718 326 KDVVFLVDVSGSMQ------G---VLLEQTKNALSASLS--KLNPQDSFNIIAFNGETHLFSS----SMKLASQGTIINA 390 (591)
Q Consensus 326 ~~ivfviD~SgSM~------g---~~i~~ak~al~~~l~--~L~~~d~f~Ii~F~~~~~~~~~----~~~~~~~~~~~~a 390 (591)
|.+++++|.||||. | ++++.+|..+..+.+ .-+.+|+++ |++......+ .....+.+.++..
T Consensus 1 ~~l~lavDlSgSM~~~~~~dg~~~~RL~a~k~v~~~f~~f~~~r~~DriG---~~g~~~~~~~lt~d~p~t~d~~~~~~l 77 (191)
T cd01455 1 KRLKLVVDVSGSMYRFNGYDGRLDRSLEAVVMVMEAFDGFEDKIQYDIIG---HSGDGPCVPFVKTNHPPKNNKERLETL 77 (191)
T ss_pred CceEEEEECcHhHHHHhccCCccccHHHHHHHHHHHHHHHHHhCccceee---ecCcccccCccccccCcccchhHHHHH
Confidence 46899999999992 2 567888888777763 334588888 3444321111 1111233434445
Q ss_pred HHHHhcCCCC---CCCchHHHHHHHHHhhh-cCCCCccEEEEEecCCCCChh-hHHHHHHHHHhcCCCCCCeEEEEEcCC
Q 007718 391 TQWLSSLVAG---GGTNILLPLKQAIKLLS-DTSESIPLIFLITDGTVGDER-GICNEIKSYLTNTRSISPRICTFGVGL 465 (591)
Q Consensus 391 ~~~i~~l~~~---GgT~l~~aL~~a~~~l~-~~~~~~~~IillTDG~~~~~~-~i~~~v~~~~~~~~~~~~ri~t~GiG~ 465 (591)
.+.++..+.+ .+|. .||..|++.+. ..+...+.|||+|||+.+... ...+....... ..+++||+||||.
T Consensus 78 ~~~l~~~q~g~ag~~Ta--dAi~~av~rl~~~~~a~~kvvILLTDG~n~~~~i~P~~aAa~lA~---~~gV~iytIgiG~ 152 (191)
T cd01455 78 KMMHAHSQFCWSGDHTV--EATEFAIKELAAKEDFDEAIVIVLSDANLERYGIQPKKLADALAR---EPNVNAFVIFIGS 152 (191)
T ss_pred HHHHHhcccCccCccHH--HHHHHHHHHHHhcCcCCCcEEEEEeCCCcCCCCCChHHHHHHHHH---hCCCEEEEEEecC
Confidence 5556655543 4455 99999999997 766778899999999976443 22221122221 2469999999998
Q ss_pred CCCHHHHHHHHHhCCCEEEEcCCCCchHHHHHHHHHH
Q 007718 466 YCNHYFLQILAQIGRGYYDSAYDPGSVDYRIRRFFTA 502 (591)
Q Consensus 466 ~~~~~lL~~LA~~~~G~~~~v~~~~~l~~~~~~~~~~ 502 (591)
. +...|+.+|+.++|.|+.+.+.+++++.++.++..
T Consensus 153 ~-d~~~l~~iA~~tgG~~F~A~d~~~L~~iy~~I~~~ 188 (191)
T cd01455 153 L-SDEADQLQRELPAGKAFVCMDTSELPHIMQQIFTS 188 (191)
T ss_pred C-CHHHHHHHHhCCCCcEEEeCCHHHHHHHHHHHHHH
Confidence 5 77889999999999999999998888877777764
No 38
>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism]
Probab=99.61 E-value=2e-14 Score=138.25 Aligned_cols=165 Identities=23% Similarity=0.256 Sum_probs=125.0
Q ss_pred ccCceEEEEEeCCcCCCcc-hHHHHHHHHHHHHHh-cCCCCeEEEEEeC-CceEeeecCcccCCHHHHHHHHHHHhcCCC
Q 007718 323 VFRKDVVFLVDVSGSMQGV-LLEQTKNALSASLSK-LNPQDSFNIIAFN-GETHLFSSSMKLASQGTIINATQWLSSLVA 399 (591)
Q Consensus 323 ~~~~~ivfviD~SgSM~g~-~i~~ak~al~~~l~~-L~~~d~f~Ii~F~-~~~~~~~~~~~~~~~~~~~~a~~~i~~l~~ 399 (591)
....-|+|++|.||||... +|+.+|-++..+|.. ..-.|++++|+|. ++++++.+. ..+++.+.++|..+..
T Consensus 76 r~g~lvvfvVDASgSM~~~~Rm~aaKG~~~~lL~dAYq~RdkvavI~F~G~~A~lll~p-----T~sv~~~~~~L~~l~~ 150 (261)
T COG1240 76 RAGNLIVFVVDASGSMAARRRMAAAKGAALSLLRDAYQRRDKVAVIAFRGEKAELLLPP-----TSSVELAERALERLPT 150 (261)
T ss_pred CcCCcEEEEEeCcccchhHHHHHHHHHHHHHHHHHHHHccceEEEEEecCCcceEEeCC-----cccHHHHHHHHHhCCC
Confidence 3456799999999999986 899999999888754 4668999999998 456665442 2467888999999999
Q ss_pred CCCCchHHHHHHHHHhhhcCC----CCccEEEEEecCCCCCh--hhHHHHHHHHHhcCCCCCCeEEEEEcCC-CCCHHHH
Q 007718 400 GGGTNILLPLKQAIKLLSDTS----ESIPLIFLITDGTVGDE--RGICNEIKSYLTNTRSISPRICTFGVGL-YCNHYFL 472 (591)
Q Consensus 400 ~GgT~l~~aL~~a~~~l~~~~----~~~~~IillTDG~~~~~--~~i~~~v~~~~~~~~~~~~ri~t~GiG~-~~~~~lL 472 (591)
+|+|.|.+||..+++++.... +....+|+||||..+.. ..+..............+..+..+.+.. .....+.
T Consensus 151 GG~TPL~~aL~~a~ev~~r~~r~~p~~~~~~vviTDGr~n~~~~~~~~~e~~~~a~~~~~~g~~~lvid~e~~~~~~g~~ 230 (261)
T COG1240 151 GGKTPLADALRQAYEVLAREKRRGPDRRPVMVVITDGRANVPIPLGPKAETLEAASKLRLRGIQLLVIDTEGSEVRLGLA 230 (261)
T ss_pred CCCCchHHHHHHHHHHHHHhhccCCCcceEEEEEeCCccCCCCCCchHHHHHHHHHHHhhcCCcEEEEecCCccccccHH
Confidence 999999999999999987643 46679999999998643 2222222222222233456667777643 3556789
Q ss_pred HHHHHhCCCEEEEcCCCCch
Q 007718 473 QILAQIGRGYYDSAYDPGSV 492 (591)
Q Consensus 473 ~~LA~~~~G~~~~v~~~~~l 492 (591)
+.||+..||.|+++.+..+.
T Consensus 231 ~~iA~~~Gg~~~~L~~l~~~ 250 (261)
T COG1240 231 EEIARASGGEYYHLDDLSDD 250 (261)
T ss_pred HHHHHHhCCeEEecccccch
Confidence 99999999999999887644
No 39
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.60 E-value=2.3e-14 Score=159.30 Aligned_cols=163 Identities=24% Similarity=0.268 Sum_probs=121.9
Q ss_pred ccCceEEEEEeCCcCCCcchHHHHHHHHHHHHHh-cCCCCeEEEEEeCCce-EeeecCcccCCHHHHHHHHHHHhcCCCC
Q 007718 323 VFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSK-LNPQDSFNIIAFNGET-HLFSSSMKLASQGTIINATQWLSSLVAG 400 (591)
Q Consensus 323 ~~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~-L~~~d~f~Ii~F~~~~-~~~~~~~~~~~~~~~~~a~~~i~~l~~~ 400 (591)
.....++||||+||||.+.+|+.+|.++..++.. +.++|+|+|++|++.. ..+.+. + .+...+.+.|+.+.++
T Consensus 405 ~~~~~v~fvvD~SGSM~~~rl~~aK~av~~Ll~~~~~~~D~v~Li~F~~~~a~~~lp~----t-~~~~~~~~~L~~l~~g 479 (589)
T TIGR02031 405 KSGRLLIFVVDASGSAAVARMSEAKGAVELLLGEAYVHRDQVSLIAFRGTAAEVLLPP----S-RSVEQAKRRLDVLPGG 479 (589)
T ss_pred ccCceEEEEEECCCCCChHHHHHHHHHHHHHHHhhccCCCEEEEEEECCCCceEECCC----C-CCHHHHHHHHhcCCCC
Confidence 3456799999999999999999999999999875 4578999999998764 444332 1 2455567778999999
Q ss_pred CCCchHHHHHHHHHhhhcC--CCCccEEEEEecCCCCChh------------hHHHHHHHHHhcCCCCCCeEEEEEcCCC
Q 007718 401 GGTNILLPLKQAIKLLSDT--SESIPLIFLITDGTVGDER------------GICNEIKSYLTNTRSISPRICTFGVGLY 466 (591)
Q Consensus 401 GgT~l~~aL~~a~~~l~~~--~~~~~~IillTDG~~~~~~------------~i~~~v~~~~~~~~~~~~ri~t~GiG~~ 466 (591)
|+|+++.||..|++.+... ....+.|||+|||..+... ...+.+..........++.+++|++|..
T Consensus 480 GgTpL~~gL~~A~~~~~~~~~~~~~~~ivllTDG~~nv~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~gi~~~vid~~~~ 559 (589)
T TIGR02031 480 GGTPLAAGLAAAFQTALQARSSGGTPTIVLITDGRGNIPLDGDPESIKADREQAAEEALALARKIREAGMPALVIDTAMR 559 (589)
T ss_pred CCCcHHHHHHHHHHHHHHhcccCCceEEEEECCCCCCCCCCcccccccccchhHHHHHHHHHHHHHhcCCeEEEEeCCCC
Confidence 9999999999999988643 2345689999999986321 1112211111112234588999999976
Q ss_pred C-CHHHHHHHHHhCCCEEEEcCCCC
Q 007718 467 C-NHYFLQILAQIGRGYYDSAYDPG 490 (591)
Q Consensus 467 ~-~~~lL~~LA~~~~G~~~~v~~~~ 490 (591)
. +..+++.||+.++|.|+++.+.+
T Consensus 560 ~~~~~~~~~lA~~~~g~y~~l~~~~ 584 (589)
T TIGR02031 560 FVSTGFAQKLARKMGAHYIYLPNAT 584 (589)
T ss_pred CccchHHHHHHHhcCCcEEeCCCCC
Confidence 3 45689999999999999988754
No 40
>PF13757 VIT_2: Vault protein inter-alpha-trypsin domain
Probab=99.58 E-value=1.6e-14 Score=114.43 Aligned_cols=69 Identities=20% Similarity=0.274 Sum_probs=64.9
Q ss_pred CccccccceeEEEEEEEEeeeEEEEEEEEEEecccCCCceeeEEEEeecCCCeeEEEEEEEECCEEEEEEEEeh
Q 007718 79 PALIPLHMHGVEMEVDCCLDTAFVAFNGSWRVHCIMAGRQCDCTIAVPLGERGSLLGVEVEIDGRSYQSKLISL 152 (591)
Q Consensus 79 ~~~~pL~~~~v~v~V~~~~~~a~v~~~q~f~n~~~~~~~~~e~~y~fPL~~~a~V~~f~~~i~gk~i~~~v~~k 152 (591)
...+||++.+|+..|.|+ .|.++++++|.| ++++++|+.|+|||+++++|+||++.|+||++++++++|
T Consensus 9 ~~~LpL~~~~v~a~v~G~--~~~~ta~lty~N---~~~~plEg~f~fPL~e~~~V~gfea~i~gr~v~~~v~~r 77 (78)
T PF13757_consen 9 RNPLPLQSSRVTACVNGY--SAGTTASLTYEN---PEDRPLEGVFVFPLDEGATVVGFEADIGGRIVTVQVQDR 77 (78)
T ss_pred CCcceEEEeEEEEEEEcc--cccEEEEEEEEC---CCCCcEEEEEEEecCCCcEEEEEEEEeCCcEEEEEeeec
Confidence 446999999999999999 577999999999 799999999999999999999999999999999999987
No 41
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.
Probab=99.57 E-value=1.3e-13 Score=126.76 Aligned_cols=149 Identities=30% Similarity=0.437 Sum_probs=114.3
Q ss_pred ceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcCC---CCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCCCCCC
Q 007718 326 KDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNP---QDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAGGG 402 (591)
Q Consensus 326 ~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~~---~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~~~Gg 402 (591)
.+++|++|+|+||...+++.+++++..++..+.. .++++++.|++....+.+.....+.+.+.++++.+.. ..+|+
T Consensus 1 ~~v~~viD~S~Sm~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 79 (161)
T cd00198 1 ADIVFLLDVSGSMGGEKLDKAKEALKALVSSLSASPPGDRVGLVTFGSNARVVLPLTTDTDKADLLEAIDALKK-GLGGG 79 (161)
T ss_pred CcEEEEEeCCCCcCcchHHHHHHHHHHHHHhcccCCCCcEEEEEEecCccceeecccccCCHHHHHHHHHhccc-CCCCC
Confidence 3689999999999778999999999999999986 8999999999987766554333344555555443332 25699
Q ss_pred CchHHHHHHHHHhhhcC--CCCccEEEEEecCCCCChh-hHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHhC
Q 007718 403 TNILLPLKQAIKLLSDT--SESIPLIFLITDGTVGDER-GICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIG 479 (591)
Q Consensus 403 T~l~~aL~~a~~~l~~~--~~~~~~IillTDG~~~~~~-~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~LA~~~ 479 (591)
|++..++..+.+.+... ....+.++++|||..+... ...+.+... . ..+++++.+|+|...+...|+.|+..+
T Consensus 80 t~~~~al~~~~~~~~~~~~~~~~~~lvvitDg~~~~~~~~~~~~~~~~-~---~~~v~v~~v~~g~~~~~~~l~~l~~~~ 155 (161)
T cd00198 80 TNIGAALRLALELLKSAKRPNARRVIILLTDGEPNDGPELLAEAAREL-R---KLGITVYTIGIGDDANEDELKEIADKT 155 (161)
T ss_pred ccHHHHHHHHHHHhcccCCCCCceEEEEEeCCCCCCCcchhHHHHHHH-H---HcCCEEEEEEcCCCCCHHHHHHHhccc
Confidence 99999999999998653 4567899999999987654 333333332 2 235899999999977899999999887
No 42
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=99.54 E-value=3.4e-13 Score=126.13 Aligned_cols=145 Identities=17% Similarity=0.138 Sum_probs=108.2
Q ss_pred ceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcC---CCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCCCC-C
Q 007718 326 KDVVFLVDVSGSMQGVLLEQTKNALSASLSKLN---PQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAG-G 401 (591)
Q Consensus 326 ~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~---~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~~~-G 401 (591)
+|++|++|.|+||....++.+|+.+..+++.+. .+.|++++.|+++++..+......+.+. ..+.|+++... |
T Consensus 1 ~DivfllD~S~Si~~~~f~~~k~fi~~lv~~f~i~~~~~rVgvv~ys~~~~~~~~l~~~~~~~~---l~~~i~~i~~~~g 77 (165)
T cd01481 1 KDIVFLIDGSDNVGSGNFPAIRDFIERIVQSLDVGPDKIRVAVVQFSDTPRPEFYLNTHSTKAD---VLGAVRRLRLRGG 77 (165)
T ss_pred CCEEEEEeCCCCcCHHHHHHHHHHHHHHHhhccCCCCCcEEEEEEecCCeeEEEeccccCCHHH---HHHHHHhcccCCC
Confidence 489999999999988899999999999999885 4679999999999877655433344444 45556666664 4
Q ss_pred -CCchHHHHHHHHHhhhcC-------CCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHH
Q 007718 402 -GTNILLPLKQAIKLLSDT-------SESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQ 473 (591)
Q Consensus 402 -gT~l~~aL~~a~~~l~~~-------~~~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~ 473 (591)
+|+++.||+.+.+.+... ++.++.++++|||..++. +... .+.+.+ .++.+|++|+|. .|...|+
T Consensus 78 ~~t~t~~AL~~~~~~~f~~~~g~R~~~~~~kv~vviTdG~s~d~--~~~~-a~~lr~---~gv~i~~vG~~~-~~~~eL~ 150 (165)
T cd01481 78 SQLNTGSALDYVVKNLFTKSAGSRIEEGVPQFLVLITGGKSQDD--VERP-AVALKR---AGIVPFAIGARN-ADLAELQ 150 (165)
T ss_pred CcccHHHHHHHHHHhhcCccccCCccCCCCeEEEEEeCCCCcch--HHHH-HHHHHH---CCcEEEEEeCCc-CCHHHHH
Confidence 589999999988765432 133568999999998753 2222 222222 358999999984 6899999
Q ss_pred HHHHhCC
Q 007718 474 ILAQIGR 480 (591)
Q Consensus 474 ~LA~~~~ 480 (591)
.||....
T Consensus 151 ~ias~p~ 157 (165)
T cd01481 151 QIAFDPS 157 (165)
T ss_pred HHhCCCc
Confidence 9998764
No 43
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=99.54 E-value=1e-13 Score=125.98 Aligned_cols=139 Identities=24% Similarity=0.391 Sum_probs=103.6
Q ss_pred EEEEEeCCcCCCcchHHHHHHHHHHHHHhcCC------CCeEEEEEeCCceEeeecCcccCCHHHHHHHHHH-HhcCCCC
Q 007718 328 VVFLVDVSGSMQGVLLEQTKNALSASLSKLNP------QDSFNIIAFNGETHLFSSSMKLASQGTIINATQW-LSSLVAG 400 (591)
Q Consensus 328 ivfviD~SgSM~g~~i~~ak~al~~~l~~L~~------~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~-i~~l~~~ 400 (591)
++|++|+||||.|++|+..+..++.+++.|.. ...++||+|++.+....+.. + +.++ ...+.+.
T Consensus 6 ~~lllDtSgSM~Ge~IealN~Glq~m~~~Lkqdp~Ale~v~lsIVTF~~~a~~~~pf~---~------~~nF~~p~L~a~ 76 (207)
T COG4245 6 CYLLLDTSGSMIGEPIEALNAGLQMMIDTLKQDPYALERVELSIVTFGGPARVIQPFT---D------AANFNPPILTAQ 76 (207)
T ss_pred EEEEEecCcccccccHHHHHHHHHHHHHHHHhChhhhheeEEEEEEecCcceEEechh---h------HhhcCCCceecC
Confidence 78999999999999999999999999998863 56899999999887765432 1 1111 1256788
Q ss_pred CCCchHHHHHHHHHhhhcC---------CCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCC-CCHH
Q 007718 401 GGTNILLPLKQAIKLLSDT---------SESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLY-CNHY 470 (591)
Q Consensus 401 GgT~l~~aL~~a~~~l~~~---------~~~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~-~~~~ 470 (591)
|||.+++||+.+.++.... ....+.+||+|||+++|.-..-.....+ +.....++.++++|.. +|..
T Consensus 77 GgT~lGaAl~~a~d~Ie~~~~~~~a~~kgdyrP~vfLiTDG~PtD~w~~~~~~~~~---~~~~~k~v~a~~~G~~~ad~~ 153 (207)
T COG4245 77 GGTPLGAALTLALDMIEERKRKYDANGKGDYRPWVFLITDGEPTDDWQAGAALVFQ---GERRAKSVAAFSVGVQGADNK 153 (207)
T ss_pred CCCchHHHHHHHHHHHHHHHhhcccCCccccceEEEEecCCCcchHHHhHHHHhhh---cccccceEEEEEecccccccH
Confidence 9999999999999998653 2456799999999997642221111111 1123357888888876 8888
Q ss_pred HHHHHHHh
Q 007718 471 FLQILAQI 478 (591)
Q Consensus 471 lL~~LA~~ 478 (591)
.|+++++.
T Consensus 154 ~L~qit~~ 161 (207)
T COG4245 154 TLNQITEK 161 (207)
T ss_pred HHHHHHHh
Confidence 99999865
No 44
>cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most
Probab=99.53 E-value=1.8e-13 Score=132.24 Aligned_cols=147 Identities=21% Similarity=0.274 Sum_probs=107.9
Q ss_pred CceEEEEEeCCcCCCcc-------hHHHHHHHHHHHHHhcC--CCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHh
Q 007718 325 RKDVVFLVDVSGSMQGV-------LLEQTKNALSASLSKLN--PQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLS 395 (591)
Q Consensus 325 ~~~ivfviD~SgSM~g~-------~i~~ak~al~~~l~~L~--~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~ 395 (591)
+++++|+||+||||... +++.+++++..++..+. +.|++.++.|++....+. +.+ ...+.+.+.
T Consensus 2 ~~dvv~~ID~SgSM~~~~~~~~~~k~~~ak~~~~~l~~~~~~~D~d~i~l~~f~~~~~~~~----~~~---~~~v~~~~~ 74 (199)
T cd01457 2 NRDYTLLIDKSGSMAEADEAKERSRWEEAQESTRALARKCEEYDSDGITVYLFSGDFRRYD----NVN---SSKVDQLFA 74 (199)
T ss_pred CcCEEEEEECCCcCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCCCeEEEEecCCccccC----CcC---HHHHHHHHh
Confidence 57999999999999853 79999999999887664 467899999988875442 233 344455567
Q ss_pred cCCCCCCCchHHHHHHHHHhhhcCC----C--CccEEEEEecCCCCChhhHHHHHHHHHhcCC-CCCCeEEEEEcCCC-C
Q 007718 396 SLVAGGGTNILLPLKQAIKLLSDTS----E--SIPLIFLITDGTVGDERGICNEIKSYLTNTR-SISPRICTFGVGLY-C 467 (591)
Q Consensus 396 ~l~~~GgT~l~~aL~~a~~~l~~~~----~--~~~~IillTDG~~~~~~~i~~~v~~~~~~~~-~~~~ri~t~GiG~~-~ 467 (591)
++.+.|+|++..+|+.+++.+.... . ....||++|||.+++...+.+.+.+...+.. ..++.|+++++|.+ .
T Consensus 75 ~~~p~G~T~l~~~l~~a~~~~~~~~~~~~~~p~~~~vIiiTDG~~~d~~~~~~~i~~a~~~l~~~~~i~i~~v~vG~~~~ 154 (199)
T cd01457 75 ENSPDGGTNLAAVLQDALNNYFQRKENGATCPEGETFLVITDGAPDDKDAVERVIIKASDELDADNELAISFLQIGRDPA 154 (199)
T ss_pred cCCCCCcCcHHHHHHHHHHHHHHHHhhccCCCCceEEEEEcCCCCCcHHHHHHHHHHHHHhhccccCceEEEEEeCCcHH
Confidence 7888899999999998875433211 1 1478999999999877666555555433211 13588999999986 3
Q ss_pred CHHHHHHHHHh
Q 007718 468 NHYFLQILAQI 478 (591)
Q Consensus 468 ~~~lL~~LA~~ 478 (591)
+..+|+.|+..
T Consensus 155 ~~~~L~~ld~~ 165 (199)
T cd01457 155 ATAFLKALDDQ 165 (199)
T ss_pred HHHHHHHHhHH
Confidence 67789999875
No 45
>KOG2353 consensus L-type voltage-dependent Ca2+ channel, alpha2/delta subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.53 E-value=9.4e-14 Score=159.53 Aligned_cols=185 Identities=26% Similarity=0.335 Sum_probs=158.3
Q ss_pred CCccCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcCCCCeEEEEEeCCceEee----ecCcccCCHHHHHHHHHHHhc
Q 007718 321 RKVFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLF----SSSMKLASQGTIINATQWLSS 396 (591)
Q Consensus 321 ~~~~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~~~d~f~Ii~F~~~~~~~----~~~~~~~~~~~~~~a~~~i~~ 396 (591)
....||+++|++|.||||.|.++..+|..+..+|+.|.++|.|++++|++++... ...+.++|..|++...+.++.
T Consensus 221 aAt~pKdiviLlD~SgSm~g~~~~lak~tv~~iLdtLs~~Dfvni~tf~~~~~~v~pc~~~~lvqAt~~nk~~~~~~i~~ 300 (1104)
T KOG2353|consen 221 AATSPKDIVILLDVSGSMSGLRLDLAKQTVNEILDTLSDNDFVNILTFNSEVNPVSPCFNGTLVQATMRNKKVFKEAIET 300 (1104)
T ss_pred ccCCccceEEEEeccccccchhhHHHHHHHHHHHHhcccCCeEEEEeeccccCcccccccCceeecchHHHHHHHHHHhh
Confidence 3467999999999999999999999999999999999999999999999997643 345678999999999999999
Q ss_pred CCCCCCCchHHHHHHHHHhhhcCC----C-----CccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCC
Q 007718 397 LVAGGGTNILLPLKQAIKLLSDTS----E-----SIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYC 467 (591)
Q Consensus 397 l~~~GgT~l~~aL~~a~~~l~~~~----~-----~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~ 467 (591)
+.+.|-+++..|++.|+++|.... + -...|+++|||.+++...+++.... +...+|+|||-+|...
T Consensus 301 l~~k~~a~~~~~~e~aF~lL~~~n~s~~~~~~~~C~~~iml~tdG~~~~~~~If~~yn~-----~~~~Vrvftflig~~~ 375 (1104)
T KOG2353|consen 301 LDAKGIANYTAALEYAFSLLRDYNDSRANTQRSPCNQAIMLITDGVDENAKEIFEKYNW-----PDKKVRVFTFLIGDEV 375 (1104)
T ss_pred hccccccchhhhHHHHHHHHHHhccccccccccccceeeEEeecCCcccHHHHHHhhcc-----CCCceEEEEEEecccc
Confidence 998899999999999999987531 1 2348999999999988888766433 2456999999999753
Q ss_pred -CHHHHHHHHHhCCCEEEEcCCCCchHHHHHHHHHHhccceEEe
Q 007718 468 -NHYFLQILAQIGRGYYDSAYDPGSVDYRIRRFFTAASSVFLTN 510 (591)
Q Consensus 468 -~~~lL~~LA~~~~G~~~~v~~~~~l~~~~~~~~~~~~~p~~~~ 510 (591)
+...++-+|..+.|.|.++.+..++.......+.-+..|..-.
T Consensus 376 ~~~~~~~wmac~n~gyy~~I~~~~~v~~~~~~y~~vlsRp~vl~ 419 (1104)
T KOG2353|consen 376 YDLDEIQWMACANKGYYVHIISIADVRENVLEYLDVLSRPLVLQ 419 (1104)
T ss_pred cccccchhhhhhCCCceEeccchhhcChHhhhhhhhhccceeec
Confidence 4556999999999999999999999988888888887776554
No 46
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.50 E-value=6.2e-13 Score=149.61 Aligned_cols=156 Identities=24% Similarity=0.301 Sum_probs=116.3
Q ss_pred ccCceEEEEEeCCcCCCc-chHHHHHHHHHHHHH-hcCCCCeEEEEEeCCc-eEeeecCcccCCHHHHHHHHHHHhcCCC
Q 007718 323 VFRKDVVFLVDVSGSMQG-VLLEQTKNALSASLS-KLNPQDSFNIIAFNGE-THLFSSSMKLASQGTIINATQWLSSLVA 399 (591)
Q Consensus 323 ~~~~~ivfviD~SgSM~g-~~i~~ak~al~~~l~-~L~~~d~f~Ii~F~~~-~~~~~~~~~~~~~~~~~~a~~~i~~l~~ 399 (591)
.....++||||.||||.+ .++..+|.++..++. .+..+|+|+||.|+++ +..+.+. + .+...+...|..+..
T Consensus 463 r~~~~vv~vvD~SgSM~~~~rl~~ak~a~~~ll~~a~~~~D~v~lI~F~g~~a~~~~p~----t-~~~~~~~~~L~~l~~ 537 (633)
T TIGR02442 463 RAGNLVIFVVDASGSMAARGRMAAAKGAVLSLLRDAYQKRDKVALITFRGEEAEVLLPP----T-SSVELAARRLEELPT 537 (633)
T ss_pred CCCceEEEEEECCccCCCccHHHHHHHHHHHHHHHhhcCCCEEEEEEECCCCceEEcCC----C-CCHHHHHHHHHhCCC
Confidence 456689999999999987 499999999988875 4567899999999864 5554432 2 234455567888999
Q ss_pred CCCCchHHHHHHHHHhhhc----CCCCccEEEEEecCCCCCh---hhHHH---HHHHHHhcCCCCCCeEEEEEcCCC-CC
Q 007718 400 GGGTNILLPLKQAIKLLSD----TSESIPLIFLITDGTVGDE---RGICN---EIKSYLTNTRSISPRICTFGVGLY-CN 468 (591)
Q Consensus 400 ~GgT~l~~aL~~a~~~l~~----~~~~~~~IillTDG~~~~~---~~i~~---~v~~~~~~~~~~~~ri~t~GiG~~-~~ 468 (591)
+|+|+|..||..|++.+.. .+...+.|||+|||..+.. ....+ .+.+.+. ..++.+++|+++.. ..
T Consensus 538 gG~Tpl~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~a~~l~---~~~i~~~vIdt~~~~~~ 614 (633)
T TIGR02442 538 GGRTPLAAGLLKAAEVLSNELLRDDDGRPLLVVITDGRANVADGGEPPTDDARTIAAKLA---ARGILFVVIDTESGFVR 614 (633)
T ss_pred CCCCCHHHHHHHHHHHHHHhhccCCCCceEEEEECCCCCCCCCCCCChHHHHHHHHHHHH---hcCCeEEEEeCCCCCcc
Confidence 9999999999999998872 3346679999999998652 11112 2222222 23577888887653 45
Q ss_pred HHHHHHHHHhCCCEEEEc
Q 007718 469 HYFLQILAQIGRGYYDSA 486 (591)
Q Consensus 469 ~~lL~~LA~~~~G~~~~v 486 (591)
..+++.||+.+||.|+.+
T Consensus 615 ~~~~~~lA~~~gg~y~~l 632 (633)
T TIGR02442 615 LGLAEDLARALGGEYVRL 632 (633)
T ss_pred hhHHHHHHHhhCCeEEec
Confidence 789999999999999875
No 47
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=99.34 E-value=7.1e-11 Score=111.58 Aligned_cols=144 Identities=13% Similarity=0.156 Sum_probs=108.2
Q ss_pred eEEEEEeCCcCCCc-----chHHHHHHHHHHHHH---hcCCCCeEEEEEeCC-ceEeeecCcccCCHHHHHHHHHHHhcC
Q 007718 327 DVVFLVDVSGSMQG-----VLLEQTKNALSASLS---KLNPQDSFNIIAFNG-ETHLFSSSMKLASQGTIINATQWLSSL 397 (591)
Q Consensus 327 ~ivfviD~SgSM~g-----~~i~~ak~al~~~l~---~L~~~d~f~Ii~F~~-~~~~~~~~~~~~~~~~~~~a~~~i~~l 397 (591)
.++|++|.|.||.. .+++.+|+++..++. ...++++++|+.|++ .+....+.+ .+ ...+...++.+
T Consensus 5 a~vi~lD~S~sM~a~D~~PnRL~aak~~i~~~~~~f~~~np~~~vGlv~fag~~a~v~~plT--~D---~~~~~~~L~~i 79 (187)
T cd01452 5 ATMICIDNSEYMRNGDYPPTRFQAQADAVNLICQAKTRSNPENNVGLMTMAGNSPEVLVTLT--ND---QGKILSKLHDV 79 (187)
T ss_pred EEEEEEECCHHHHcCCCCCCHHHHHHHHHHHHHHHHHhcCCCccEEEEEecCCceEEEECCC--CC---HHHHHHHHHhC
Confidence 47899999999985 589999999988762 335578999999999 787776543 23 45556667788
Q ss_pred CCCCCCchHHHHHHHHHhhhcCCC--C-ccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCC-CCHHHHH
Q 007718 398 VAGGGTNILLPLKQAIKLLSDTSE--S-IPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLY-CNHYFLQ 473 (591)
Q Consensus 398 ~~~GgT~l~~aL~~a~~~l~~~~~--~-~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~-~~~~lL~ 473 (591)
..+|+|++..||+.|...|...+. . .+.|+|++++...++..+.+.+++... .+++|+.+|+|.. .|...|+
T Consensus 80 ~~~g~~~l~~AL~~A~~~L~~~~~~~~~~rivi~v~S~~~~d~~~i~~~~~~lkk----~~I~v~vI~~G~~~~~~~~l~ 155 (187)
T cd01452 80 QPKGKANFITGIQIAQLALKHRQNKNQKQRIVAFVGSPIEEDEKDLVKLAKRLKK----NNVSVDIINFGEIDDNTEKLT 155 (187)
T ss_pred CCCCcchHHHHHHHHHHHHhcCCCcCCcceEEEEEecCCcCCHHHHHHHHHHHHH----cCCeEEEEEeCCCCCCHHHHH
Confidence 888999999999999999875533 3 366777877766676666666665543 3599999999964 4567777
Q ss_pred HHHHhC
Q 007718 474 ILAQIG 479 (591)
Q Consensus 474 ~LA~~~ 479 (591)
.+-+.-
T Consensus 156 ~~~~~~ 161 (187)
T cd01452 156 AFIDAV 161 (187)
T ss_pred HHHHHh
Confidence 776654
No 48
>PF10138 vWA-TerF-like: vWA found in TerF C terminus ; InterPro: IPR019303 This entry represents the N-terminal domain of a family of proteins that confer resistance to the metalloid element tellurium and its salts.
Probab=99.28 E-value=2e-10 Score=108.23 Aligned_cols=158 Identities=20% Similarity=0.240 Sum_probs=113.2
Q ss_pred ceEEEEEeCCcCCCcc----hHHHHHHHHHHHHHhcCCCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHh-cC---
Q 007718 326 KDVVFLVDVSGSMQGV----LLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLS-SL--- 397 (591)
Q Consensus 326 ~~ivfviD~SgSM~g~----~i~~ak~al~~~l~~L~~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~-~l--- 397 (591)
..|++|||.||||.+. ..+.+.+-+..+..+|.++-.+.++.|+++...+. ..+.++...-++.+. ++
T Consensus 2 ArV~LVLD~SGSM~~~yk~G~vQ~~~Er~lalA~~~DdDG~i~v~~Fs~~~~~~~----~vt~~~~~~~v~~~~~~~~~~ 77 (200)
T PF10138_consen 2 ARVYLVLDISGSMRPLYKDGTVQRVVERILALAAQFDDDGEIDVWFFSTEFDRLP----DVTLDNYEGYVDELHAGLPDW 77 (200)
T ss_pred cEEEEEEeCCCCCchhhhCccHHHHHHHHHHHHhhcCCCCceEEEEeCCCCCcCC----CcCHHHHHHHHHHHhcccccc
Confidence 3689999999999963 35555555555667888887899999999987653 456666665554443 22
Q ss_pred CCCCCCchHHHHHHHHHhhhcC-C-CCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHH
Q 007718 398 VAGGGTNILLPLKQAIKLLSDT-S-ESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQIL 475 (591)
Q Consensus 398 ~~~GgT~l~~aL~~a~~~l~~~-~-~~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~L 475 (591)
...|+|+...+|+.+++..... + ..+..|+|+|||.+++...+.+.+++. ....+-+--+|+|.. +..+|+.|
T Consensus 78 ~~~G~t~y~~vm~~v~~~y~~~~~~~~P~~VlFiTDG~~~~~~~~~~~i~~a----s~~pifwqFVgiG~~-~f~fL~kL 152 (200)
T PF10138_consen 78 GRMGGTNYAPVMEDVLDHYFKREPSDAPALVLFITDGGPDDRRAIEKLIREA----SDEPIFWQFVGIGDS-NFGFLEKL 152 (200)
T ss_pred CCCCCcchHHHHHHHHHHHhhcCCCCCCeEEEEEecCCccchHHHHHHHHhc----cCCCeeEEEEEecCC-cchHHHHh
Confidence 3448999999999999987643 2 235589999999999888887777665 234566777899987 58899999
Q ss_pred HHhCC-----CEEEEcCCCCch
Q 007718 476 AQIGR-----GYYDSAYDPGSV 492 (591)
Q Consensus 476 A~~~~-----G~~~~v~~~~~l 492 (591)
....| ..++.+.+.+++
T Consensus 153 D~l~gR~vDNa~Ff~~~d~~~l 174 (200)
T PF10138_consen 153 DDLAGRVVDNAGFFAIDDIDEL 174 (200)
T ss_pred hccCCcccCCcCeEecCCcccC
Confidence 88522 224455555444
No 49
>PRK10997 yieM hypothetical protein; Provisional
Probab=99.23 E-value=2.3e-10 Score=122.31 Aligned_cols=144 Identities=18% Similarity=0.175 Sum_probs=106.6
Q ss_pred CccCceEEEEEeCCcCCCcchHHHHHHHHHHHH-HhcCCCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCCCC
Q 007718 322 KVFRKDVVFLVDVSGSMQGVLLEQTKNALSASL-SKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAG 400 (591)
Q Consensus 322 ~~~~~~ivfviD~SgSM~g~~i~~ak~al~~~l-~~L~~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~~~ 400 (591)
......++++||+||||.|.+...||..+..+. -.+..++++.++.|++....+ + . .....+.++.+++... .+
T Consensus 320 ~~~kGpiII~VDtSGSM~G~ke~~AkalAaAL~~iAl~q~dr~~li~Fs~~i~~~-~-l--~~~~gl~~ll~fL~~~-f~ 394 (487)
T PRK10997 320 EQPRGPFIVCVDTSGSMGGFNEQCAKAFCLALMRIALAENRRCYIMLFSTEVVTY-E-L--TGPDGLEQAIRFLSQS-FR 394 (487)
T ss_pred CCCCCcEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCceee-c-c--CCccCHHHHHHHHHHh-cC
Confidence 346789999999999999988888887555444 367789999999999987653 1 1 2345677788888643 57
Q ss_pred CCCchHHHHHHHHHhhhcCCCCccEEEEEecCCCCC-hhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHH
Q 007718 401 GGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVGD-ERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQ 473 (591)
Q Consensus 401 GgT~l~~aL~~a~~~l~~~~~~~~~IillTDG~~~~-~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~ 473 (591)
|||++..+|+.+++.+....-+...||++||+.... +....+.++.... ..+.|+|++.+|.+.+..+++
T Consensus 395 GGTDl~~aL~~al~~l~~~~~r~adIVVISDF~~~~~~eel~~~L~~Lk~---~~~~rf~~l~i~~~~~p~l~~ 465 (487)
T PRK10997 395 GGTDLAPCLRAIIEKMQGREWFDADAVVISDFIAQRLPDELVAKVKELQR---QHQHRFHAVAMSAHGKPGIMR 465 (487)
T ss_pred CCCcHHHHHHHHHHHHcccccCCceEEEECCCCCCCChHHHHHHHHHHHH---hcCcEEEEEEeCCCCCchHHH
Confidence 999999999999998865433445899999998643 4555555555432 135899999999876766543
No 50
>COG2425 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.21 E-value=7.9e-11 Score=123.36 Aligned_cols=146 Identities=23% Similarity=0.258 Sum_probs=107.3
Q ss_pred ceEEEEEeCCcCCCcchHHHHHHHHHHHHH-hcCCCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCCCCCCCc
Q 007718 326 KDVVFLVDVSGSMQGVLLEQTKNALSASLS-KLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAGGGTN 404 (591)
Q Consensus 326 ~~ivfviD~SgSM~g~~i~~ak~al~~~l~-~L~~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~~~GgT~ 404 (591)
..+++|||.||||.|.+...||..+.++++ .|.++-++-++.|++...... ...-..++.++++++...-++| ||
T Consensus 273 GpvilllD~SGSM~G~~e~~AKAvalAl~~~alaenR~~~~~lF~s~~~~~e---l~~k~~~~~e~i~fL~~~f~GG-TD 348 (437)
T COG2425 273 GPVILLLDKSGSMSGFKEQWAKAVALALMRIALAENRDCYVILFDSEVIEYE---LYEKKIDIEELIEFLSYVFGGG-TD 348 (437)
T ss_pred CCEEEEEeCCCCcCCcHHHHHHHHHHHHHHHHHHhccceEEEEecccceeee---ecCCccCHHHHHHHHhhhcCCC-CC
Confidence 679999999999999999999976666654 567788899999999543321 1122337888999887655555 99
Q ss_pred hHHHHHHHHHhhhcCCCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHhC
Q 007718 405 ILLPLKQAIKLLSDTSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIG 479 (591)
Q Consensus 405 l~~aL~~a~~~l~~~~~~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~LA~~~ 479 (591)
+..||..|++.+.+.+-...-+++||||...-.......+..... ....++|++-||.+... -|.+++...
T Consensus 349 ~~~~l~~al~~~k~~~~~~adiv~ITDg~~~~~~~~~~~v~e~~k---~~~~rl~aV~I~~~~~~-~l~~Isd~~ 419 (437)
T COG2425 349 ITKALRSALEDLKSRELFKADIVVITDGEDERLDDFLRKVKELKK---RRNARLHAVLIGGYGKP-GLMRISDHI 419 (437)
T ss_pred hHHHHHHHHHHhhcccccCCCEEEEeccHhhhhhHHHHHHHHHHH---HhhceEEEEEecCCCCc-ccceeeeee
Confidence 999999999998866545568999999997654444555554432 24589999999987433 445555443
No 51
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=99.21 E-value=6.1e-10 Score=110.84 Aligned_cols=169 Identities=15% Similarity=0.155 Sum_probs=113.0
Q ss_pred cCceEEEEEeCCcCCCcc-----hHHHHHHHHHHHHHhcCCCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCC
Q 007718 324 FRKDVVFLVDVSGSMQGV-----LLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLV 398 (591)
Q Consensus 324 ~~~~ivfviD~SgSM~g~-----~i~~ak~al~~~l~~L~~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~ 398 (591)
..-+|+|+||.|.||... .++ +|..+..+++.|. .++|+|+.|++++....|...+.+. +.+.+.++.+.
T Consensus 59 r~~qIvlaID~S~SM~~~~~~~~ale-ak~lIs~al~~Le-~g~vgVv~Fg~~~~~v~Plt~d~~~---~a~~~~l~~~~ 133 (266)
T cd01460 59 RDYQILIAIDDSKSMSENNSKKLALE-SLCLVSKALTLLE-VGQLGVCSFGEDVQILHPFDEQFSS---QSGPRILNQFT 133 (266)
T ss_pred cCceEEEEEecchhcccccccccHHH-HHHHHHHHHHhCc-CCcEEEEEeCCCceEeCCCCCCchh---hHHHHHhCccc
Confidence 356899999999999742 344 7888888888887 5799999999999887766544333 55666677555
Q ss_pred CC-CCCchHHHHHHHHHhhhcCC----CC--ccEEEEEecCCCCChhhHH-HHHHHHHhcCCCCCCeEEEEEcCCCC-CH
Q 007718 399 AG-GGTNILLPLKQAIKLLSDTS----ES--IPLIFLITDGTVGDERGIC-NEIKSYLTNTRSISPRICTFGVGLYC-NH 469 (591)
Q Consensus 399 ~~-GgT~l~~aL~~a~~~l~~~~----~~--~~~IillTDG~~~~~~~i~-~~v~~~~~~~~~~~~ri~t~GiG~~~-~~ 469 (591)
.. +||++..+|..+.+.+.... .. .+.+|++|||...+..... ..+++.. ..++.++.+++-+.. +.
T Consensus 134 f~~~~Tni~~aL~~a~~~f~~~~~~~~s~~~~qlilLISDG~~~~~e~~~~~~~r~a~----e~~i~l~~I~ld~~~~~~ 209 (266)
T cd01460 134 FQQDKTDIANLLKFTAQIFEDARTQSSSGSLWQLLLIISDGRGEFSEGAQKVRLREAR----EQNVFVVFIIIDNPDNKQ 209 (266)
T ss_pred CCCCCCcHHHHHHHHHHHHHhhhccccccccccEEEEEECCCcccCccHHHHHHHHHH----HcCCeEEEEEEcCCCCCC
Confidence 55 99999999999999987541 11 2799999999943222222 2234332 235899999986541 11
Q ss_pred ----------------HHHHHHHHhCCCEEEEcCCCCchHHHHHHHHH
Q 007718 470 ----------------YFLQILAQIGRGYYDSAYDPGSVDYRIRRFFT 501 (591)
Q Consensus 470 ----------------~lL~~LA~~~~G~~~~v~~~~~l~~~~~~~~~ 501 (591)
.+-+.|-..+--.|..+.+.+++++.+...+.
T Consensus 210 SI~d~~~~~~~~~~~~~l~~Yl~~fpfpYy~~~~~~~~lp~~l~~~lr 257 (266)
T cd01460 210 SILDIKVVSFKNDKSGVITPYLDEFPFPYYVIVRDLNQLPSVLSDALR 257 (266)
T ss_pred CcccccccccCCCCccHHHHHHhcCCCCeEEEecChhHhHHHHHHHHH
Confidence 12233334444556666666666665555444
No 52
>cd01458 vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heterodimer (composed of Ku70 and Ku80) contributes to genomic integrity through its ability to bind DNA double-strand breaks (DSB) in a preferred orientation. DSB's are repaired by either homologues recombination or non-homologues end joining and facilitate repair by the non-homologous end-joining pathway (NHEJ). The Ku heterodimer is required for accurate process that tends to preserve the sequence at the junction. Ku78 is found in all three kingdoms of life. However, only the eukaryotic proteins have a vWA domain fused to them at their N-termini. The vWA domain is not involved in DNA binding but may very likey mediate Ku78's interactions with other proteins. Members of this subgroup lack the conserved MIDAS motif.
Probab=99.04 E-value=4.2e-09 Score=103.27 Aligned_cols=140 Identities=17% Similarity=0.198 Sum_probs=96.9
Q ss_pred eEEEEEeCCcCCC-------cchHHHHHHHHHHHHHh---cCCCCeEEEEEeCCceEe----------eecCcccCCHHH
Q 007718 327 DVVFLVDVSGSMQ-------GVLLEQTKNALSASLSK---LNPQDSFNIIAFNGETHL----------FSSSMKLASQGT 386 (591)
Q Consensus 327 ~ivfviD~SgSM~-------g~~i~~ak~al~~~l~~---L~~~d~f~Ii~F~~~~~~----------~~~~~~~~~~~~ 386 (591)
.++|+||+|.||. .++++.+++++..++++ -.++|+++|+.|+++... +.+ ....+.+.
T Consensus 3 ~ivf~iDvS~SM~~~~~~~~~s~l~~a~~~i~~~~~~ki~~~~~D~vGlilf~t~~~~~~~~~~~i~v~~~-l~~~~~~~ 81 (218)
T cd01458 3 SVVFLVDVSPSMFESKDGEYESPFEEALKCIRQLMKSKIISSPKDLVGVVFYGTEESKNPVGYENIYVLLD-LDTPGAER 81 (218)
T ss_pred EEEEEEeCCHHHcCCCCCCCCChHHHHHHHHHHHHHhceeCCCCCeEEEEEEcccCCCCcCCCCceEEeec-CCCCCHHH
Confidence 5899999999994 26899999999999998 478999999999997421 122 22345556
Q ss_pred HHHHHHHHhcC-C-------CCCCCchHHHHHHHHHhhhc--CCCCccEEEEEecCCCCCh--hhHHHHHHHHHhcCCCC
Q 007718 387 IINATQWLSSL-V-------AGGGTNILLPLKQAIKLLSD--TSESIPLIFLITDGTVGDE--RGICNEIKSYLTNTRSI 454 (591)
Q Consensus 387 ~~~a~~~i~~l-~-------~~GgT~l~~aL~~a~~~l~~--~~~~~~~IillTDG~~~~~--~~i~~~v~~~~~~~~~~ 454 (591)
++...+.++.- . ..++|++..||..|.+++.. .+...+.|||+|||..... ....+.+...+.+....
T Consensus 82 l~~l~~~~~~~~~~~~~~~~~~~~~~l~~aL~~a~~~~~~~~~~~~~k~IvL~TDg~~p~~~~~~~~~~~~~~a~~l~~~ 161 (218)
T cd01458 82 VEDLKELIEPGGLSFAGQVGDSGQVSLSDALWVCLDLFSKGKKKKSHKRIFLFTNNDDPHGGDSIKDSQAAVKAEDLKDK 161 (218)
T ss_pred HHHHHHHhhcchhhhcccCCCCCCccHHHHHHHHHHHHHhccccccccEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhC
Confidence 66655554421 1 24789999999999999975 2345689999999986521 11112222222222334
Q ss_pred CCeEEEEEcCCCC
Q 007718 455 SPRICTFGVGLYC 467 (591)
Q Consensus 455 ~~ri~t~GiG~~~ 467 (591)
++.+++||+|...
T Consensus 162 gI~i~~i~i~~~~ 174 (218)
T cd01458 162 GIELELFPLSSPG 174 (218)
T ss_pred CcEEEEEecCCCC
Confidence 6999999998764
No 53
>PF11775 CobT_C: Cobalamin biosynthesis protein CobT VWA domain
Probab=98.99 E-value=9.9e-09 Score=97.46 Aligned_cols=171 Identities=17% Similarity=0.223 Sum_probs=104.8
Q ss_pred cCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcC-CCCeEEEEEeCCce-------EeeecCcccCCHHHHHH------
Q 007718 324 FRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLN-PQDSFNIIAFNGET-------HLFSSSMKLASQGTIIN------ 389 (591)
Q Consensus 324 ~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~-~~d~f~Ii~F~~~~-------~~~~~~~~~~~~~~~~~------ 389 (591)
...-|.||||+||||.|.+++.|..++..+.+.|. -+..+.|+.|.+.. +.|...-.+..+.-+.+
T Consensus 11 ~d~~VtlLID~SGSMrgr~~~vA~~~adila~aL~~~gvp~EVlGFtT~aw~gg~~~~~w~~~G~p~~pgrln~l~h~vy 90 (219)
T PF11775_consen 11 RDTVVTLLIDCSGSMRGRPIEVAALCADILARALERCGVPVEVLGFTTRAWKGGRSREAWLAAGRPRYPGRLNDLRHIVY 90 (219)
T ss_pred CCeEEEEEEeCCcCCCCChHHHHHHHHHHHHHHHHhCCCCeEEEeeecCCcCCcchHHHHHhcCCCCCChHHHHHHHHHH
Confidence 44567899999999999999988776666666664 36788999998873 11211111111222222
Q ss_pred ---------HHHHHh-cCCCC-CCCch-HHHHHHHHHhhhcCCCCccEEEEEecCCCCCh-------hhHHH-HHHHHHh
Q 007718 390 ---------ATQWLS-SLVAG-GGTNI-LLPLKQAIKLLSDTSESIPLIFLITDGTVGDE-------RGICN-EIKSYLT 449 (591)
Q Consensus 390 ---------a~~~i~-~l~~~-GgT~l-~~aL~~a~~~l~~~~~~~~~IillTDG~~~~~-------~~i~~-~v~~~~~ 449 (591)
+...+. -++.+ ...|+ ++||.+|.+.+.+.+...+.++++|||.|.+. ...++ .+++.+.
T Consensus 91 k~a~~~wrraR~~l~~m~~~~~~~eniDGeAl~~a~~rL~~r~e~rkiLiViSDG~P~d~st~~~n~~~~L~~HLr~vi~ 170 (219)
T PF11775_consen 91 KDADTPWRRARRNLGLMMREGLLKENIDGEALRWAAERLLARPEQRKILIVISDGAPADDSTLSANDGDYLDAHLRQVIA 170 (219)
T ss_pred HhcCChhhhHHHhHHHHhhccccccCCcHHHHHHHHHHHHcCCccceEEEEEeCCCcCcccccccCChHHHHHHHHHHHH
Confidence 221111 11222 23444 78999999999888888899999999999632 22222 2222222
Q ss_pred cCC-CCCCeEEEEEcCCCCCHHHHHHHHHhCCCEEEEcCCCCchHHHHHHHHHHh
Q 007718 450 NTR-SISPRICTFGVGLYCNHYFLQILAQIGRGYYDSAYDPGSVDYRIRRFFTAA 503 (591)
Q Consensus 450 ~~~-~~~~ri~t~GiG~~~~~~lL~~LA~~~~G~~~~v~~~~~l~~~~~~~~~~~ 503 (591)
.-. ...+.+.++|||.++..+. -.+..+.+.+++...+...+.++
T Consensus 171 ~ie~~~~Vel~aiGIg~D~~~yY---------~~~~~i~~~e~l~~~~~~~l~~l 216 (219)
T PF11775_consen 171 EIETRSDVELIAIGIGHDVSRYY---------RRAVTIDDVEELGGALFEQLARL 216 (219)
T ss_pred HHhccCCcEEEEEEcCCCchhhc---------ccceecCCHHHHHHHHHHHHHHH
Confidence 211 2358899999998754421 13445677778877776666554
No 54
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=98.77 E-value=1.2e-07 Score=93.01 Aligned_cols=129 Identities=22% Similarity=0.257 Sum_probs=79.2
Q ss_pred ccCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcCCCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHh--cCCCC
Q 007718 323 VFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLS--SLVAG 400 (591)
Q Consensus 323 ~~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~--~l~~~ 400 (591)
..|..+++++|+||||.+.. ...-..+..+....+ ++.++.|+++.....+.... .+..+++..+. ....+
T Consensus 55 ~~~~~lvvl~DvSGSM~~~s-~~~l~~~~~l~~~~~---~~~~f~F~~~l~~vT~~l~~---~~~~~~l~~~~~~~~~~~ 127 (222)
T PF05762_consen 55 RKPRRLVVLCDVSGSMAGYS-EFMLAFLYALQRQFR---RVRVFVFSTRLTEVTPLLRR---RDPEEALARLSALVQSFG 127 (222)
T ss_pred CCCccEEEEEeCCCChHHHH-HHHHHHHHHHHHhCC---CEEEEEEeeehhhhhhhhcc---CCHHHHHHHHHhhccCCC
Confidence 34568999999999998621 112222333333333 88999999987655433221 12233443333 22356
Q ss_pred CCCchHHHHHHHHHhhhcCCCCccEEEEEecCCCC-ChhhHHHHHHHHHhcCCCCCCeEEEEE
Q 007718 401 GGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVG-DERGICNEIKSYLTNTRSISPRICTFG 462 (591)
Q Consensus 401 GgT~l~~aL~~a~~~l~~~~~~~~~IillTDG~~~-~~~~i~~~v~~~~~~~~~~~~ri~t~G 462 (591)
|||++..+|+.+.+......-....+|++|||..+ +.....+.+++.... ..+++.+.
T Consensus 128 GgTdi~~aL~~~~~~~~~~~~~~t~vvIiSDg~~~~~~~~~~~~l~~l~~r----~~rviwLn 186 (222)
T PF05762_consen 128 GGTDIGQALREFLRQYARPDLRRTTVVIISDGWDTNDPEPLAEELRRLRRR----GRRVIWLN 186 (222)
T ss_pred CccHHHHHHHHHHHHhhcccccCcEEEEEecccccCChHHHHHHHHHHHHh----CCEEEEEC
Confidence 99999999999998875322245689999999544 445555555554332 35676664
No 55
>TIGR01651 CobT cobaltochelatase, CobT subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=98.72 E-value=7.2e-08 Score=103.78 Aligned_cols=171 Identities=18% Similarity=0.207 Sum_probs=101.9
Q ss_pred cCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcC-CCCeEEEEEeCCceE-------eeecCcccCCH-----------
Q 007718 324 FRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLN-PQDSFNIIAFNGETH-------LFSSSMKLASQ----------- 384 (591)
Q Consensus 324 ~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~-~~d~f~Ii~F~~~~~-------~~~~~~~~~~~----------- 384 (591)
...-|.|+||+||||.+.++..|...+..+.+.|. .+..+-|+.|.+.+. .|...-.+..+
T Consensus 391 ~D~~V~LLID~SGSM~~r~~~vA~~~a~iLa~aL~~~gIp~eVlGFtt~aw~gg~~re~w~~~g~p~~PgRlN~l~hiiy 470 (600)
T TIGR01651 391 RDTVVTLLIDNSGSMRGRPITVAATCADILARTLERCGVKVEILGFTTRAWKGGQSREKWLKAGKPAAPGRLNDLRHIIY 470 (600)
T ss_pred CCcEEEEEEECCccCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEeecccccccccchHHHHhcCCCCCCcccchhhhhhh
Confidence 44567899999999999888877755545555554 367889999987631 11111111111
Q ss_pred ----HHHHHHHHHHhcC-CCC-CCCch-HHHHHHHHHhhhcCCCCccEEEEEecCCCCChh-------hHHH-HHHHHHh
Q 007718 385 ----GTIINATQWLSSL-VAG-GGTNI-LLPLKQAIKLLSDTSESIPLIFLITDGTVGDER-------GICN-EIKSYLT 449 (591)
Q Consensus 385 ----~~~~~a~~~i~~l-~~~-GgT~l-~~aL~~a~~~l~~~~~~~~~IillTDG~~~~~~-------~i~~-~v~~~~~ 449 (591)
..+..+...+..+ +.+ ..-|+ +.||.+|.+.|.+.+...+++++||||.|.+.. ..++ .++..+.
T Consensus 471 k~ad~~wr~~r~~l~~mm~~~~~~eN~DGeAl~wa~~rL~~R~e~rKiL~ViSDG~P~D~~TlsvN~~~~l~~hLr~vi~ 550 (600)
T TIGR01651 471 KSADAPWRRARRNLGLMMREGLLKENIDGEALMWAHQRLIARPEQRRILMMISDGAPVDDSTLSVNPGNYLERHLRAVIE 550 (600)
T ss_pred hccccchhhhccchhhhhhccccccCCchHHHHHHHHHHhcCcccceEEEEEeCCCcCCccccccCchhHHHHHHHHHHH
Confidence 0111111111101 111 11222 789999999998888888999999999996422 1222 2222222
Q ss_pred cCCC-CCCeEEEEEcCCCCCHHHHHHHHHhCCCEEEEcCCCCchHHHHHHHHHHh
Q 007718 450 NTRS-ISPRICTFGVGLYCNHYFLQILAQIGRGYYDSAYDPGSVDYRIRRFFTAA 503 (591)
Q Consensus 450 ~~~~-~~~ri~t~GiG~~~~~~lL~~LA~~~~G~~~~v~~~~~l~~~~~~~~~~~ 503 (591)
.-.. .++.+.++|||.++..+. ..+..|.+.+++...|...+..+
T Consensus 551 ~~e~~~~vel~aigIg~Dv~r~Y---------~~~v~i~~~~eL~~~~~~qLa~L 596 (600)
T TIGR01651 551 EIETRSPVELLAIGIGHDVTRYY---------RRAVTIVDAEELAGAMTEQLAAL 596 (600)
T ss_pred HHhccCCceEEEeeccccHHHHc---------cccceecCHHHHHHHHHHHHHHH
Confidence 2222 368999999999855433 33346777778877776655543
No 56
>PF04056 Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like proteins are 40 kDa subunits of the transcription factor II H complex. This domain is often found associated with the C2H2 type Zn-finger (IPR007087 from INTERPRO).; GO: 0008270 zinc ion binding, 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent
Probab=98.64 E-value=1e-06 Score=83.42 Aligned_cols=165 Identities=18% Similarity=0.221 Sum_probs=119.7
Q ss_pred EEeCCcCCCc-----chHHHHHHHHHHHHHhc---CCCCeEEEEEeCCc-eEeeecCcccCCHHHHHHHHHHHhcCCCCC
Q 007718 331 LVDVSGSMQG-----VLLEQTKNALSASLSKL---NPQDSFNIIAFNGE-THLFSSSMKLASQGTIINATQWLSSLVAGG 401 (591)
Q Consensus 331 viD~SgSM~g-----~~i~~ak~al~~~l~~L---~~~d~f~Ii~F~~~-~~~~~~~~~~~~~~~~~~a~~~i~~l~~~G 401 (591)
|||.|.+|.. +++....+++..|+... +|-.+++|+...+. ++.+.+. ..+.....+++..+.+..+.|
T Consensus 1 viD~S~~m~~~D~~PtRl~~~~~~l~~Fv~eff~qNPiSqlgii~~~~~~a~~ls~l--sgn~~~h~~~L~~~~~~~~~G 78 (193)
T PF04056_consen 1 VIDMSEAMREKDLKPTRLQCVLKALEEFVREFFDQNPISQLGIIVMRDGRAERLSEL--SGNPQEHIEALKKLRKLEPSG 78 (193)
T ss_pred CeechHhHHhCcCCccHHHHHHHHHHHHHHHHHhcCChhheeeeeeecceeEEeeec--CCCHHHHHHHHHHhccCCCCC
Confidence 6899999974 57888888888888754 56679999998876 5555432 345666666666666677889
Q ss_pred CCchHHHHHHHHHhhhcCC-CCccEEEEEecCCCC-ChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHhC
Q 007718 402 GTNILLPLKQAIKLLSDTS-ESIPLIFLITDGTVG-DERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIG 479 (591)
Q Consensus 402 gT~l~~aL~~a~~~l~~~~-~~~~~IillTDG~~~-~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~LA~~~ 479 (591)
...|..||+.|...+...+ ...|.|+++.-...+ |+.++.+.++.... .++|+..||++. .-+.++.|++.|
T Consensus 79 ~~SLqN~Le~A~~~L~~~p~~~srEIlvi~gSl~t~Dp~di~~ti~~l~~----~~IrvsvI~laa--Ev~I~k~i~~~T 152 (193)
T PF04056_consen 79 EPSLQNGLEMARSSLKHMPSHGSREILVIFGSLTTCDPGDIHETIESLKK----ENIRVSVISLAA--EVYICKKICKET 152 (193)
T ss_pred ChhHHHHHHHHHHHHhhCccccceEEEEEEeecccCCchhHHHHHHHHHH----cCCEEEEEEEhH--HHHHHHHHHHhh
Confidence 9999999999999997653 234566666644333 56667666666543 359999999987 456899999999
Q ss_pred CCEEEEcCCCCchHHHHHHHHHHhccce
Q 007718 480 RGYYDSAYDPGSVDYRIRRFFTAASSVF 507 (591)
Q Consensus 480 ~G~~~~v~~~~~l~~~~~~~~~~~~~p~ 507 (591)
+|.|..+-+.+. +.+++.+...|.
T Consensus 153 ~G~y~V~lde~H----~~~lL~~~~~PP 176 (193)
T PF04056_consen 153 GGTYGVILDEDH----FKELLMEHVPPP 176 (193)
T ss_pred CCEEEEecCHHH----HHHHHHhhCCCC
Confidence 999998877654 445555555443
No 57
>COG4867 Uncharacterized protein with a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.59 E-value=1.4e-06 Score=88.67 Aligned_cols=159 Identities=23% Similarity=0.309 Sum_probs=110.3
Q ss_pred ccCceEEEEEeCCcCCC--c--chHHHHHHHHHHHHHhcCCCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCC
Q 007718 323 VFRKDVVFLVDVSGSMQ--G--VLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLV 398 (591)
Q Consensus 323 ~~~~~ivfviD~SgSM~--g--~~i~~ak~al~~~l~~L~~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~ 398 (591)
.....+++++|||.||. | .++.+.--|+..++..--++|.+.+|.|+..++.. +.+. +..+.
T Consensus 461 rt~aAvallvDtS~SM~~eGRw~PmKQtALALhHLv~TrfrGD~l~~i~Fgr~A~~v-------~v~e-------Lt~l~ 526 (652)
T COG4867 461 RTQAAVALLVDTSFSMVMEGRWLPMKQTALALHHLVCTRFRGDALQIIAFGRYARTV-------TAAE-------LTGLA 526 (652)
T ss_pred hcccceeeeeeccHHHHHhccCCchHHHHHHHHHHHHhcCCCcceEEEeccchhccc-------CHHH-------HhcCC
Confidence 34567899999999996 3 35555555666677666679999999999987653 2111 23333
Q ss_pred C--CCCCchHHHHHHHHHhhhcCCCCccEEEEEecCCCCC-----------------hhhHHHHHHHHHhcCCCCCCeEE
Q 007718 399 A--GGGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVGD-----------------ERGICNEIKSYLTNTRSISPRIC 459 (591)
Q Consensus 399 ~--~GgT~l~~aL~~a~~~l~~~~~~~~~IillTDG~~~~-----------------~~~i~~~v~~~~~~~~~~~~ri~ 459 (591)
. .-|||+..||..|-..+...++..++|+++|||+++. +..+...++.. .+....++.+.
T Consensus 527 ~v~eqgTNlhhaL~LA~r~l~Rh~~~~~~il~vTDGePtAhle~~DG~~~~f~yp~DP~t~~~Tvr~~-d~~~r~G~q~t 605 (652)
T COG4867 527 GVYEQGTNLHHALALAGRHLRRHAGAQPVVLVVTDGEPTAHLEDGDGTSVFFDYPPDPRTIAHTVRGF-DDMARLGAQVT 605 (652)
T ss_pred CccccccchHHHHHHHHHHHHhCcccCceEEEEeCCCccccccCCCCceEecCCCCChhHHHHHHHHH-HHHHhccceee
Confidence 2 3689999999999998887777788999999999851 22233333332 23333456677
Q ss_pred EEEcCCCCC-HHHHHHHHHhCCCEEEEcCCCCchHHHHH
Q 007718 460 TFGVGLYCN-HYFLQILAQIGRGYYDSAYDPGSVDYRIR 497 (591)
Q Consensus 460 t~GiG~~~~-~~lL~~LA~~~~G~~~~v~~~~~l~~~~~ 497 (591)
+|-+|.+.. ..|++++|+..+|..++ .+.+.+-..+.
T Consensus 606 ~FrLg~DpgL~~Fv~qva~rv~G~vv~-pdldglGaaVv 643 (652)
T COG4867 606 IFRLGSDPGLARFIDQVARRVQGRVVV-PDLDGLGAAVV 643 (652)
T ss_pred EEeecCCHhHHHHHHHHHHHhCCeEEe-cCcchhhHHHH
Confidence 777777544 46899999999999875 45555654443
No 58
>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function.
Probab=98.57 E-value=3.6e-07 Score=81.27 Aligned_cols=96 Identities=19% Similarity=0.270 Sum_probs=66.7
Q ss_pred EEEEEeCCcCCCcchHHHHHHHHHHHHHhcCCCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCCCCCCCchHH
Q 007718 328 VVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAGGGTNILL 407 (591)
Q Consensus 328 ivfviD~SgSM~g~~i~~ak~al~~~l~~L~~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~~~GgT~l~~ 407 (591)
+++++|+||||....+.+.-..+..+++.. +.++.|+.|+...+..... .. .......+ .+..+|||++..
T Consensus 1 i~vaiDtSGSis~~~l~~fl~ev~~i~~~~--~~~v~vi~~D~~v~~~~~~----~~--~~~~~~~~-~~~GgGGTdf~p 71 (126)
T PF09967_consen 1 IVVAIDTSGSISDEELRRFLSEVAGILRRF--PAEVHVIQFDAEVQDVQVF----RS--LEDELRDI-KLKGGGGTDFRP 71 (126)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHhC--CCCEEEEEECCEeeeeeEE----ec--cccccccc-ccCCCCCCcchH
Confidence 478999999998877776666677777777 4579999999997653211 11 11111111 456679999999
Q ss_pred HHHHHHHhhhcCCCCccEEEEEecCCCCC
Q 007718 408 PLKQAIKLLSDTSESIPLIFLITDGTVGD 436 (591)
Q Consensus 408 aL~~a~~~l~~~~~~~~~IillTDG~~~~ 436 (591)
+++.+.+. ......+|++|||..+.
T Consensus 72 vf~~~~~~----~~~~~~vi~fTDg~~~~ 96 (126)
T PF09967_consen 72 VFEYLEEN----RPRPSVVIYFTDGEGWP 96 (126)
T ss_pred HHHHHHhc----CCCCCEEEEEeCCCCCC
Confidence 99887654 23456788999999743
No 59
>KOG3768 consensus DEAD box RNA helicase [General function prediction only]
Probab=98.55 E-value=6.5e-07 Score=94.41 Aligned_cols=175 Identities=19% Similarity=0.262 Sum_probs=118.0
Q ss_pred EEEEEeCCcCCCc------chHHHHHHHHHHHHHhcC-----CCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhc
Q 007718 328 VVFLVDVSGSMQG------VLLEQTKNALSASLSKLN-----PQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSS 396 (591)
Q Consensus 328 ivfviD~SgSM~g------~~i~~ak~al~~~l~~L~-----~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~ 396 (591)
+.|++|+||||.. +.++.||.|+..|++.-. -+||+-+++|..-.+..... -.++-.-.++-|++
T Consensus 4 ~lFllDTS~SM~qrah~~~tylD~AKgaVEtFiK~R~r~~~~~gdryml~TfeepP~~vk~~----~~~~~a~~~~eik~ 79 (888)
T KOG3768|consen 4 FLFLLDTSGSMSQRAHPQFTYLDLAKGAVETFIKQRTRVGRETGDRYMLTTFEEPPKNVKVA----CEKLGAVVIEEIKK 79 (888)
T ss_pred EEEEEecccchhhhccCCchhhHHHHHHHHHHHHHHhccccccCceEEEEecccCchhhhhH----HhhcccHHHHHHHh
Confidence 6799999999985 478999999999997532 38999999999876543221 23334445677889
Q ss_pred CCCC-CCCchHHHHHHHHHhhhcC----------CCC------ccEEEEEecCCC-CChhhHH-------------HHHH
Q 007718 397 LVAG-GGTNILLPLKQAIKLLSDT----------SES------IPLIFLITDGTV-GDERGIC-------------NEIK 445 (591)
Q Consensus 397 l~~~-GgT~l~~aL~~a~~~l~~~----------~~~------~~~IillTDG~~-~~~~~i~-------------~~v~ 445 (591)
+++. |.+.+..++..|+++|.-. .++ .-.||+||||.- +....+- ..+.
T Consensus 80 l~a~~~s~~~~~~~t~AFdlLnlnR~qtGID~yGqGR~pf~lEP~~iI~iTDG~r~s~~~GV~~e~~Lpl~~p~pGse~T 159 (888)
T KOG3768|consen 80 LHAPYGSCQLHHAITEAFDLLNLNRVQTGIDGYGQGRLPFNLEPVTIILITDGGRYSGVAGVPIEFRLPLDPPFPGSEMT 159 (888)
T ss_pred hcCccchhhhhHHHHHHhhhhhhhhhhhcccccccccCccccCceEEEEEecCCccccccCCceeEEeccCCCCCccccc
Confidence 9998 5566777777799988532 122 238999999931 1000000 0000
Q ss_pred HHHhcCCCCCCeEEEEEc---C-----------CCCCHHHHHHHHHhCCCEEEEcCCCCchHHHHHHHHHHhccceEE
Q 007718 446 SYLTNTRSISPRICTFGV---G-----------LYCNHYFLQILAQIGRGYYDSAYDPGSVDYRIRRFFTAASSVFLT 509 (591)
Q Consensus 446 ~~~~~~~~~~~ri~t~Gi---G-----------~~~~~~lL~~LA~~~~G~~~~v~~~~~l~~~~~~~~~~~~~p~~~ 509 (591)
+ +.-...-|+|++-+ | -..|..-++.|.+.+||+.+.+.+...+.+.++.++.+...-++-
T Consensus 160 k---epFRWDQrlftlVlRiPgt~~~~~~qlt~Vp~Dds~IermCevTGGRSysV~Spr~lnqciesLvqkvQ~gVvv 234 (888)
T KOG3768|consen 160 K---EPFRWDQRLFTLVLRIPGTPYPTISQLTAVPIDDSVIERMCEVTGGRSYSVVSPRQLNQCIESLVQKVQYGVVV 234 (888)
T ss_pred c---ccchhhhhhheeeEecCCCCCccHhhhcCCCCCchhhHHhhhhcCCceeeeeCHHHHHHHHHHHHHhhccCeEE
Confidence 0 00012245666644 2 134566799999999999999999999999999999886654443
No 60
>COG4548 NorD Nitric oxide reductase activation protein [Inorganic ion transport and metabolism]
Probab=98.45 E-value=6.4e-07 Score=94.04 Aligned_cols=177 Identities=16% Similarity=0.148 Sum_probs=120.0
Q ss_pred cCceEEEEEeCCcCCCcchHHHH-------HHHHHHHHHhcC-CCCeEEEEEeCCceEee--ecCcccCCHHHHHHHHHH
Q 007718 324 FRKDVVFLVDVSGSMQGVLLEQT-------KNALSASLSKLN-PQDSFNIIAFNGETHLF--SSSMKLASQGTIINATQW 393 (591)
Q Consensus 324 ~~~~ivfviD~SgSM~g~~i~~a-------k~al~~~l~~L~-~~d~f~Ii~F~~~~~~~--~~~~~~~~~~~~~~a~~~ 393 (591)
..--+.+++|+|.||.. +++.. ++|++.+-..+. -++.+.+..|.+....| .+.....+.......-..
T Consensus 445 ~Dla~TLLvD~S~St~a-~mdetrRvidl~~eaL~~la~~~qa~gd~~~~~~fts~rr~~vri~tvk~FDes~~~~~~~R 523 (637)
T COG4548 445 HDLAFTLLVDVSASTDA-KMDETRRVIDLFHEALLVLAHGHQALGDSEDILDFTSRRRPWVRINTVKDFDESMGETVGPR 523 (637)
T ss_pred ccceeEEEeecccchHH-HhhhhhhhHHHHHHHHHHhhchhhhhCCHHHhcCchhhcCcceeeeeeeccccccccccchh
Confidence 34567899999999974 55554 444444433332 27888889998876543 122233333333333444
Q ss_pred HhcCCCCCCCchHHHHHHHHHhhhcCCCCccEEEEEecCCCCChh-----hHHHHHHHHHhcCCCCCCeEEEEEcCCCCC
Q 007718 394 LSSLVAGGGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVGDER-----GICNEIKSYLTNTRSISPRICTFGVGLYCN 468 (591)
Q Consensus 394 i~~l~~~GgT~l~~aL~~a~~~l~~~~~~~~~IillTDG~~~~~~-----~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~ 468 (591)
|..++++-.|.++.||+.|.+.+...+.+.+.+|++|||++++-+ .-+..-++++....+.++.+|.+-+....-
T Consensus 524 ImALePg~ytR~G~AIR~As~kL~~rpq~qklLivlSDGkPnd~d~YEgr~gIeDTr~AV~eaRk~Gi~VF~Vtld~ea~ 603 (637)
T COG4548 524 IMALEPGYYTRDGAAIRHASAKLMERPQRQKLLIVLSDGKPNDFDHYEGRFGIEDTREAVIEARKSGIEVFNVTLDREAI 603 (637)
T ss_pred heecCccccccccHHHHHHHHHHhcCcccceEEEEecCCCcccccccccccchhhHHHHHHHHHhcCceEEEEEecchhh
Confidence 667889999999999999999988888889999999999997422 112222344444445678999998876644
Q ss_pred HHHHHHHHHhCCCEEEEcCCCCchHHHHHHHHHHhc
Q 007718 469 HYFLQILAQIGRGYYDSAYDPGSVDYRIRRFFTAAS 504 (591)
Q Consensus 469 ~~lL~~LA~~~~G~~~~v~~~~~l~~~~~~~~~~~~ 504 (591)
.++ -+..+.+.|.+|.+...++..+-.+++++.
T Consensus 604 ~y~---p~~fgqngYa~V~~v~~LP~~L~~lyrkL~ 636 (637)
T COG4548 604 SYL---PALFGQNGYAFVERVAQLPGALPPLYRKLL 636 (637)
T ss_pred hhh---HHHhccCceEEccchhhcchhHHHHHHHhc
Confidence 332 234466677889999999999988887753
No 61
>COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.37 E-value=1.3e-05 Score=85.85 Aligned_cols=169 Identities=24% Similarity=0.285 Sum_probs=126.7
Q ss_pred CccCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcCCCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhc-CCCC
Q 007718 322 KVFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSS-LVAG 400 (591)
Q Consensus 322 ~~~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~-l~~~ 400 (591)
...+.+.++++|+|+||.+..+..++.+...++..+.+.+.+.++.|........+... ..+...+...+.. +.+.
T Consensus 34 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~ 110 (399)
T COG2304 34 LLVPANLTLAIDTSGSMTGALLELAKSAAIELVNGLNPGDLLSIVTFAGSADVLIPPTG---ATNKESITAAIDQSLQAG 110 (399)
T ss_pred cccCcceEEEeccCCCccchhHHHHHHHHHHHhcccCCCCceEEEEecCCcceecCccc---ccCHHHHHHHHhhhhccc
Confidence 45688999999999999998899999999999999999999999999996555443322 2334444555665 7888
Q ss_pred CCCchHHHHHHHHHhhhcC--CCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHh
Q 007718 401 GGTNILLPLKQAIKLLSDT--SESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQI 478 (591)
Q Consensus 401 GgT~l~~aL~~a~~~l~~~--~~~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~LA~~ 478 (591)
|.|.+..++..+++.+... .+....+.+.|||..+........+...........+.+.++|+|.+.|..++..++..
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tdg~~~~~~~d~~~~~~~~~~~~~~~i~~~~~g~~~~~n~~~~~~~~~~ 190 (399)
T COG2304 111 GATAVEASLSLAVELAAKALPRGTLNRILLLTDGENNLGLVDPSRLSALAKLAAGKGIVLDTLGLGDDVNEDELTGIAAA 190 (399)
T ss_pred cccHHHHHHHHHHHHhhhcCCccceeeEeeeccCccccCCCCHHHHHHHhcccccCceEEEEEecccccchhhhhhhhhc
Confidence 9999999999998887653 45567899999988753211112222222222234689999999999999999999999
Q ss_pred CCCEEEEcCCCCchH
Q 007718 479 GRGYYDSAYDPGSVD 493 (591)
Q Consensus 479 ~~G~~~~v~~~~~l~ 493 (591)
..|...++.......
T Consensus 191 ~~g~l~~~~~~~~~~ 205 (399)
T COG2304 191 ANGNLAFIYLSSLSE 205 (399)
T ss_pred cCcccccccCccccc
Confidence 999888777665444
No 62
>cd01459 vWA_copine_like VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium. They are found in human and orthologues have been found in C. elegans and Arabidopsis Thaliana. None have been found in D. Melanogaster or S. Cereviciae. Phylogenetic distribution suggests that copines have been lost in some eukaryotes. No functional properties have been assigned to the VWA domains present in copines. The members of this subgroup contain a functional MIDAS motif based on their preferential binding to magnesium and manganese. However, the MIDAS motif is not totally conserved, in most cases the MIDAS consists of the sequence DxTxS instead of the motif DxSxS that is found in most cases. The C2 domains present in copines mediate phospholipid binding.
Probab=98.32 E-value=1.9e-05 Score=78.51 Aligned_cols=148 Identities=15% Similarity=0.179 Sum_probs=104.2
Q ss_pred CceEEEEEeCCcCCC---------------cchHHHHHHHHHHHHHhcCCCCeEEEEEeCCceEe---eecCc-------
Q 007718 325 RKDVVFLVDVSGSMQ---------------GVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHL---FSSSM------- 379 (591)
Q Consensus 325 ~~~ivfviD~SgSM~---------------g~~i~~ak~al~~~l~~L~~~d~f~Ii~F~~~~~~---~~~~~------- 379 (591)
..++++-||.|+|-. ....++|.+++..++....++..|-++.|+..... .....
T Consensus 31 ~~nl~vaIDfT~SNg~p~~~~SLHy~~~~~~N~Yq~aI~~vg~il~~yD~D~~ip~~GFGa~~~~~~~v~~~f~~~~~~p 110 (254)
T cd01459 31 ESNLIVAIDFTKSNGWPGEKRSLHYISPGRLNPYQKAIRIVGEVLQPYDSDKLIPAFGFGAIVTKDQSVFSFFPGYSESP 110 (254)
T ss_pred eeeEEEEEEeCCCCCCCCCCCCcccCCCCCccHHHHHHHHHHHHHHhcCCCCceeeEeecccCCCCCccccccCCCCCCC
Confidence 447788888888743 14677888888888899998899999999986421 11110
Q ss_pred ccCCHHHHHHH-HHHHhcCCCCCCCchHHHHHHHHHhhhcCCC--CccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCC
Q 007718 380 KLASQGTIINA-TQWLSSLVAGGGTNILLPLKQAIKLLSDTSE--SIPLIFLITDGTVGDERGICNEIKSYLTNTRSISP 456 (591)
Q Consensus 380 ~~~~~~~~~~a-~~~i~~l~~~GgT~l~~aL~~a~~~l~~~~~--~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ 456 (591)
....-+.+.++ .+.+.+++..|.|++...|+.+.+....... ..-+++++|||.+++..++.+.+.++- ...+
T Consensus 111 ~~~Gi~gvl~aY~~~l~~v~lsGpT~fapvI~~a~~~a~~~~~~~~Y~VLLIiTDG~i~D~~~t~~aIv~AS----~~Pl 186 (254)
T cd01459 111 ECQGFEGVLRAYREALPNVSLSGPTNFAPVIRAAANIAKASNSQSKYHILLIITDGEITDMNETIKAIVEAS----KYPL 186 (254)
T ss_pred cccCHHHHHHHHHHHhceeeecCcchHHHHHHHHHHHHHHhcCCCceEEEEEECCCCcccHHHHHHHHHHHh----cCCe
Confidence 00111233223 3455677778999999999999887654322 244689999999999888877776552 3458
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q 007718 457 RICTFGVGLYCNHYFLQILAQ 477 (591)
Q Consensus 457 ri~t~GiG~~~~~~lL~~LA~ 477 (591)
.|..+|+|+. +...|+.|-.
T Consensus 187 SIiiVGVGd~-~F~~M~~LD~ 206 (254)
T cd01459 187 SIVIVGVGDG-PFDAMERLDD 206 (254)
T ss_pred EEEEEEeCCC-ChHHHHHhcC
Confidence 8999999976 8888888865
No 63
>cd01468 trunk_domain trunk domain. COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and the Sec13p/Sec31p complex. This domain is known as the trunk domain and has an alpha/beta vWA fold and forms the dimer interface. Some members of this family possess a partial MIDAS motif that is a characteristic feature of most vWA domain proteins.
Probab=98.26 E-value=5.1e-05 Score=75.48 Aligned_cols=162 Identities=20% Similarity=0.179 Sum_probs=105.6
Q ss_pred cCceEEEEEeCCcC-CCcchHHHHHHHHHHHHHhcC--CCCeEEEEEeCCceEeeecC--c---------------ccC-
Q 007718 324 FRKDVVFLVDVSGS-MQGVLLEQTKNALSASLSKLN--PQDSFNIIAFNGETHLFSSS--M---------------KLA- 382 (591)
Q Consensus 324 ~~~~ivfviD~SgS-M~g~~i~~ak~al~~~l~~L~--~~d~f~Ii~F~~~~~~~~~~--~---------------~~~- 382 (591)
.|.-++||||+|.. ....-++.+++++...|+.|+ ++.+|+||+|++..+.+.-. . .+.
T Consensus 2 ~pp~~vFvID~s~~ai~~~~l~~~~~sl~~~l~~lp~~~~~~igiITf~~~V~~~~~~~~~~~~~~~v~~dl~d~f~p~~ 81 (239)
T cd01468 2 QPPVFVFVIDVSYEAIKEGLLQALKESLLASLDLLPGDPRARVGLITYDSTVHFYNLSSDLAQPKMYVVSDLKDVFLPLP 81 (239)
T ss_pred CCCEEEEEEEcchHhccccHHHHHHHHHHHHHHhCCCCCCcEEEEEEeCCeEEEEECCCCCCCCeEEEeCCCccCcCCCc
Confidence 35678999999974 555579999999999999999 89999999999876543210 0 000
Q ss_pred ---------CHHHHHHHHHHHhcCC-----CCCCCchHHHHHHHHHhhhcCCCCccEEEEEecCCCCCh-----------
Q 007718 383 ---------SQGTIINATQWLSSLV-----AGGGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVGDE----------- 437 (591)
Q Consensus 383 ---------~~~~~~~a~~~i~~l~-----~~GgT~l~~aL~~a~~~l~~~~~~~~~IillTDG~~~~~----------- 437 (591)
..+.+.++++.|.... ...+..++.||+.|..++.... ..-.|++++.|.++..
T Consensus 82 ~~~l~~~~e~~~~i~~~l~~l~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~-~gGkI~~f~sg~pt~GpG~l~~~~~~~ 160 (239)
T cd01468 82 DRFLVPLSECKKVIHDLLEQLPPMFWPVPTHRPERCLGPALQAAFLLLKGTF-AGGRIIVFQGGLPTVGPGKLKSREDKE 160 (239)
T ss_pred CceeeeHHHHHHHHHHHHHhhhhhccccCCCCCcccHHHHHHHHHHHHhhcC-CCceEEEEECCCCCCCCCccccCcccc
Confidence 0133444444444332 2255789999999999987642 1346788888887511
Q ss_pred --------------hhHHHHHHHHHhcCCCCCCeEEEEEcC-CCCCHHHHHHHHHhCCCEEEEcCCC
Q 007718 438 --------------RGICNEIKSYLTNTRSISPRICTFGVG-LYCNHYFLQILAQIGRGYYDSAYDP 489 (591)
Q Consensus 438 --------------~~i~~~v~~~~~~~~~~~~ri~t~GiG-~~~~~~lL~~LA~~~~G~~~~v~~~ 489 (591)
....+.+...+.+ .++.+..|..+ ..++-..|..|++.+||..++..+.
T Consensus 161 ~~~~~~e~~~~~~a~~fY~~la~~~~~---~~isvdlF~~~~~~~dl~~l~~l~~~TGG~v~~y~~f 224 (239)
T cd01468 161 PIRSHDEAQLLKPATKFYKSLAKECVK---SGICVDLFAFSLDYVDVATLKQLAKSTGGQVYLYDSF 224 (239)
T ss_pred cCCCccchhcccccHHHHHHHHHHHHH---cCeEEEEEeccccccCHHHhhhhhhcCCceEEEeCCC
Confidence 0122222222222 23444444444 3568888999999999998887765
No 64
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=98.20 E-value=2.9e-05 Score=76.81 Aligned_cols=169 Identities=15% Similarity=0.248 Sum_probs=117.1
Q ss_pred cCceEEEEEeCCcCCCc-----chHHHHHHHHHHHHHhc---CCCCeEEEEEeCCc-eEeeecCcccCCHHHHHHHHHHH
Q 007718 324 FRKDVVFLVDVSGSMQG-----VLLEQTKNALSASLSKL---NPQDSFNIIAFNGE-THLFSSSMKLASQGTIINATQWL 394 (591)
Q Consensus 324 ~~~~ivfviD~SgSM~g-----~~i~~ak~al~~~l~~L---~~~d~f~Ii~F~~~-~~~~~~~~~~~~~~~~~~a~~~i 394 (591)
.=+.+++|||+|.+|.. +++....+.+..|+..+ +|-.+++||.-.+. +..+.. ...+ .+.-++.+
T Consensus 59 iiRhl~iviD~S~am~e~Df~P~r~a~~~K~le~Fv~eFFdQNPiSQigii~~k~g~A~~lt~--ltgn---p~~hI~aL 133 (378)
T KOG2807|consen 59 IIRHLYIVIDCSRAMEEKDFRPSRFANVIKYLEGFVPEFFDQNPISQIGIISIKDGKADRLTD--LTGN---PRIHIHAL 133 (378)
T ss_pred hheeEEEEEEhhhhhhhccCCchHHHHHHHHHHHHHHHHhccCchhheeEEEEecchhhHHHH--hcCC---HHHHHHHH
Confidence 34789999999999985 35666666777777655 45578898887655 333321 1123 33334445
Q ss_pred hcCC-CCCCCchHHHHHHHHHhhhcCCCCc-c-EEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHH
Q 007718 395 SSLV-AGGGTNILLPLKQAIKLLSDTSESI-P-LIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYF 471 (591)
Q Consensus 395 ~~l~-~~GgT~l~~aL~~a~~~l~~~~~~~-~-~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~l 471 (591)
..+. ..|...|.+||+.|.+.+...++.. | ++|+++-=...|+.++.+.+.+.... ++|+..||+.. ....
T Consensus 134 ~~~~~~~g~fSLqNaLe~a~~~Lk~~p~H~sREVLii~sslsT~DPgdi~~tI~~lk~~----kIRvsvIgLsa--Ev~i 207 (378)
T KOG2807|consen 134 KGLTECSGDFSLQNALELAREVLKHMPGHVSREVLIIFSSLSTCDPGDIYETIDKLKAY----KIRVSVIGLSA--EVFI 207 (378)
T ss_pred hcccccCCChHHHHHHHHHHHHhcCCCcccceEEEEEEeeecccCcccHHHHHHHHHhh----CeEEEEEeech--hHHH
Confidence 5555 6688899999999999998765443 4 44555544445778888887776543 59999999875 4567
Q ss_pred HHHHHHhCCCEEEEcCCCCchHHHHHHHHHHhccce
Q 007718 472 LQILAQIGRGYYDSAYDPGSVDYRIRRFFTAASSVF 507 (591)
Q Consensus 472 L~~LA~~~~G~~~~v~~~~~l~~~~~~~~~~~~~p~ 507 (591)
.+.|+.+|+|.|..+-|.. -++.++.+...|.
T Consensus 208 cK~l~kaT~G~Y~V~lDe~----HlkeLl~e~~~Pp 239 (378)
T KOG2807|consen 208 CKELCKATGGRYSVALDEG----HLKELLLEHTHPP 239 (378)
T ss_pred HHHHHHhhCCeEEEEeCHH----HHHHHHHhcCCCC
Confidence 8999999999998887754 4456666665553
No 65
>PF04811 Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: IPR006896 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger (IPR006895 from INTERPRO), an alpha/beta trunk domain, an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes the Sec23/24 alpha/beta trunk domain, which is formed from a single, approximately 250-residue segment plugged into the beta-barrel between strands beta-1 and beta-19. The trunk has an alpha/beta fold with a vWA topology, and it forms the dimer interface, primarily involving strand beta-14 on Sec23 and Sec24; in addition, the trunk domain of Sec23 contacts Sar1.; GO: 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EGD_A 2NUP_A 3EG9_A 3EFO_A 3EGX_A 2NUT_A 1PD0_A 1PD1_A 1M2V_B 1PCX_A ....
Probab=98.11 E-value=9.9e-05 Score=73.62 Aligned_cols=163 Identities=21% Similarity=0.230 Sum_probs=99.5
Q ss_pred CceEEEEEeCCcC-CCcchHHHHHHHHHHHHHhcC--CCCeEEEEEeCCceEeeecC-----------------------
Q 007718 325 RKDVVFLVDVSGS-MQGVLLEQTKNALSASLSKLN--PQDSFNIIAFNGETHLFSSS----------------------- 378 (591)
Q Consensus 325 ~~~ivfviD~SgS-M~g~~i~~ak~al~~~l~~L~--~~d~f~Ii~F~~~~~~~~~~----------------------- 378 (591)
|-.++||||+|.. ....-++.++++++..|+.++ ++.+|+|++|++..+.+.-.
T Consensus 3 pp~y~FvID~s~~av~~g~~~~~~~sl~~~l~~l~~~~~~~vgiitfd~~V~~y~l~~~~~~~~~~v~~dl~~~~~p~~~ 82 (243)
T PF04811_consen 3 PPVYVFVIDVSYEAVQSGLLQSLIESLKSALDSLPGDERTRVGIITFDSSVHFYNLSSSLSQPQMIVVSDLDDPFIPLPD 82 (243)
T ss_dssp --EEEEEEE-SHHHHHHTHHHHHHHHHHHHGCTSSTSTT-EEEEEEESSSEEEEETTTTSSSTEEEEEHHTTSHHSSTSS
T ss_pred CCEEEEEEECchhhhhccHHHHHHHHHHHHHHhccCCCCcEEEEEEeCCEEEEEECCCCcCCCcccchHHHhhcccCCcc
Confidence 4569999999954 445688999999999999999 89999999999987654210
Q ss_pred --cc--cCCHHHHHHHHHHHhcCCC-----CCCCchHHHHHHHHHhhhcCCCCccEEEEEecCCCCChh-----------
Q 007718 379 --MK--LASQGTIINATQWLSSLVA-----GGGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVGDER----------- 438 (591)
Q Consensus 379 --~~--~~~~~~~~~a~~~i~~l~~-----~GgT~l~~aL~~a~~~l~~~~~~~~~IillTDG~~~~~~----------- 438 (591)
.. .-..+.+.++++.|..+.. ..+..++.||+.|..++..... .-.|++++-|.++...
T Consensus 83 ~llv~~~e~~~~i~~ll~~L~~~~~~~~~~~~~~c~G~Al~~A~~ll~~~~~-gGkI~~F~s~~pt~G~Gg~l~~~~~~~ 161 (243)
T PF04811_consen 83 GLLVPLSECRDAIEELLESLPSIFPETAGKRPERCLGSALSAALSLLSSRNT-GGKILVFTSGPPTYGPGGSLKKREDSS 161 (243)
T ss_dssp SSSEETTTCHHHHHHHHHHHHHHSTT-TTB-----HHHHHHHHHHHHHHHTS--EEEEEEESS---SSSTTSS-SBTTSC
T ss_pred cEEEEhHHhHHHHHHHHHHhhhhcccccccCccccHHHHHHHHHHHHhcccc-CCEEEEEeccCCCCCCCceeccccccc
Confidence 11 1124567777777764322 2467899999999999873222 2356666666653111
Q ss_pred ----------------hHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHhCCCEEEEcCCCC
Q 007718 439 ----------------GICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYYDSAYDPG 490 (591)
Q Consensus 439 ----------------~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~LA~~~~G~~~~v~~~~ 490 (591)
+..+.+...+.+. +..+.+|.++. ..++-..|..|++.|||..++..+..
T Consensus 162 ~~~~~~~~~~~~~~~~~fY~~la~~~~~~-~isvDlf~~~~-~~~~l~tl~~l~~~TGG~l~~y~~f~ 227 (243)
T PF04811_consen 162 HYDTEKEKALLLPPANEFYKKLAEECSKQ-GISVDLFVFSS-DYVDLATLGPLARYTGGSLYYYPNFN 227 (243)
T ss_dssp CCCHCTTHHCHSHSSSHHHHHHHHHHHHC-TEEEEEEEECS-S--SHHHHTHHHHCTT-EEEEETTTT
T ss_pred ccccccchhhhccccchHHHHHHHHHHhc-CCEEEEEeecC-CCCCcHhHHHHHHhCceeEEEeCCCC
Confidence 1233333333221 23345555543 35688889999999999998887765
No 66
>cd01479 Sec24-like Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles. The two main classes of vesicular carriers within the endocytic and the biosynthetic pathways are COP- and clathrin-coated vesicles. Formation of COPII vesicles requires the ordered assembly of the coat built from several cytosolic components GTPase Sar1, complexes of Sec23-Sec24 and Sec13-Sec31. The process is initiated by the conversion of GDP to GTP by the GTPase Sar1 which then recruits the heterodimeric complex of Sec23 and Sec24. This heterodimeric complex generates the pre-budding complex. The final step leading to membrane deformation and budding of COPII-coated vesicles is carried by the heterodimeric complex Sec13-Sec31. The members of this CD belong to the Sec23-like family. Sec 24 is very similar to Sec23. The Sec23 and Sec24
Probab=98.04 E-value=0.00029 Score=70.26 Aligned_cols=158 Identities=21% Similarity=0.227 Sum_probs=101.0
Q ss_pred CceEEEEEeCCcC-CCcchHHHHHHHHHHHHHhcCCC---CeEEEEEeCCceEeee--cC---------------cccC-
Q 007718 325 RKDVVFLVDVSGS-MQGVLLEQTKNALSASLSKLNPQ---DSFNIIAFNGETHLFS--SS---------------MKLA- 382 (591)
Q Consensus 325 ~~~ivfviD~SgS-M~g~~i~~ak~al~~~l~~L~~~---d~f~Ii~F~~~~~~~~--~~---------------~~~~- 382 (591)
|--++||||+|-. ....-++.++++++..|+.++++ .+|+||+|++..+.+. .. ..+.
T Consensus 3 pp~~~FvIDvs~~a~~~g~~~~~~~si~~~L~~lp~~~~~~~VgiITfd~~v~~y~l~~~~~~~q~~vv~dl~d~f~P~~ 82 (244)
T cd01479 3 PAVYVFLIDVSYNAIKSGLLATACEALLSNLDNLPGDDPRTRVGFITFDSTLHFFNLKSSLEQPQMMVVSDLDDPFLPLP 82 (244)
T ss_pred CCEEEEEEEccHHHHhhChHHHHHHHHHHHHHhcCCCCCCeEEEEEEECCeEEEEECCCCCCCCeEEEeeCcccccCCCC
Confidence 5579999999864 33336899999999999999976 9999999999875431 10 0000
Q ss_pred ---------CHHHHHHHHHHHhcC---CCCCCCchHHHHHHHHHhhhcCCCCccEEEEEecCCCCChh------------
Q 007718 383 ---------SQGTIINATQWLSSL---VAGGGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVGDER------------ 438 (591)
Q Consensus 383 ---------~~~~~~~a~~~i~~l---~~~GgT~l~~aL~~a~~~l~~~~~~~~~IillTDG~~~~~~------------ 438 (591)
..+.+..+++.|..+ ....++.++.||+.|..++.... -.|++++.|.++.+.
T Consensus 83 ~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~c~G~Al~~A~~lL~~~G---GkIi~f~s~~pt~GpG~l~~~~~~~~~ 159 (244)
T cd01479 83 DGLLVNLKESRQVIEDLLDQIPEMFQDTKETESALGPALQAAFLLLKETG---GKIIVFQSSLPTLGAGKLKSREDPKLL 159 (244)
T ss_pred cceeecHHHHHHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHhcC---CEEEEEeCCCCCcCCcccccCcccccc
Confidence 113344444444322 12356789999999999997432 357778778764110
Q ss_pred -------------hHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHhCCCEEEEcC
Q 007718 439 -------------GICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYYDSAY 487 (591)
Q Consensus 439 -------------~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~LA~~~~G~~~~v~ 487 (591)
...+.+...+.+ .++.+.+|++. +..++-..|..|++.|||..++..
T Consensus 160 ~~~~e~~~~~p~~~fY~~la~~~~~-~~isvDlF~~~-~~~~dla~l~~l~~~TGG~v~~y~ 219 (244)
T cd01479 160 STDKEKQLLQPQTDFYKKLALECVK-SQISVDLFLFS-NQYVDVATLGCLSRLTGGQVYYYP 219 (244)
T ss_pred CchhhhhhcCcchHHHHHHHHHHHH-cCeEEEEEEcc-CcccChhhhhhhhhhcCceEEEEC
Confidence 112222222222 23344455443 345788889999999999988776
No 67
>PRK05325 hypothetical protein; Provisional
Probab=97.96 E-value=0.00017 Score=75.54 Aligned_cols=162 Identities=15% Similarity=0.146 Sum_probs=102.3
Q ss_pred CceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcCCC-CeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCCCCCCC
Q 007718 325 RKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQ-DSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAGGGT 403 (591)
Q Consensus 325 ~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~~~-d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~~~GgT 403 (591)
..=+++++|+||||....-+.||..-..+-.-|.-+ .++-++.-.++...+ .++.++ +. .....|||
T Consensus 222 ~AVmfclMDvSGSM~~~~K~lakrff~lly~fL~r~Y~~vEvvFI~H~t~Ak-----EVdEee------FF-~~~esGGT 289 (401)
T PRK05325 222 QAVMFCLMDVSGSMDEAEKDLAKRFFFLLYLFLRRKYENVEVVFIRHHTEAK-----EVDEEE------FF-YSRESGGT 289 (401)
T ss_pred cEEEEEEEeCCCCCchHHHHHHHHHHHHHHHHHHhccCceEEEEEeecCcee-----EcCHHH------cc-ccCCCCCe
Confidence 345678999999999887788887644333333321 456666666655432 233322 11 34566999
Q ss_pred chHHHHHHHHHhhhcC---CCCccEEEEEecCCCCC--hhhHHHHHHHHHhcCCCCCCeEEEEE-cCCCC--CHHHHHHH
Q 007718 404 NILLPLKQAIKLLSDT---SESIPLIFLITDGTVGD--ERGICNEIKSYLTNTRSISPRICTFG-VGLYC--NHYFLQIL 475 (591)
Q Consensus 404 ~l~~aL~~a~~~l~~~---~~~~~~IillTDG~~~~--~~~i~~~v~~~~~~~~~~~~ri~t~G-iG~~~--~~~lL~~L 475 (591)
-+..|++.+.+.+... ....-.++-.|||.-++ .....+.+++.+.. .++.|+.+ |+... +..+.+..
T Consensus 290 ~vSSA~~l~~eIi~~rYpp~~wNIY~f~aSDGDNw~~D~~~~~~ll~~~llp----~~~~f~Y~Ev~~~~~~~~~l~~~y 365 (401)
T PRK05325 290 IVSSAYKLALEIIEERYPPAEWNIYAFQASDGDNWSSDNPRCVELLREELLP----VCNYFAYIEVTPRAYRHQTLWREY 365 (401)
T ss_pred EehHHHHHHHHHHHhhCCHhHCeeEEEEcccCCCcCCCCHHHHHHHHHHHHH----HhhheEEEEecCCCCCchHHHHHH
Confidence 9999999999998753 23455889999999753 34455666644421 14555553 44432 55666666
Q ss_pred HHhCCC----EEEEcCCCCchHHHHHHHHHH
Q 007718 476 AQIGRG----YYDSAYDPGSVDYRIRRFFTA 502 (591)
Q Consensus 476 A~~~~G----~~~~v~~~~~l~~~~~~~~~~ 502 (591)
...... ....+.+.+++-..+..+|.+
T Consensus 366 ~~i~~~~~~f~~~~I~~~~dIyp~~r~lf~k 396 (401)
T PRK05325 366 ERLQDTFPNFAMQRIRDKEDIYPVFRELFKK 396 (401)
T ss_pred HHhhccCCCeEEEEeCCHHHHHHHHHHHhcc
Confidence 555443 345577888888888888754
No 68
>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]
Probab=97.93 E-value=5.4e-05 Score=78.26 Aligned_cols=166 Identities=18% Similarity=0.227 Sum_probs=100.6
Q ss_pred ceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcC-CCCeEEEEEeCCceE-------eeecCcccCCHHHHHHHHHHHh--
Q 007718 326 KDVVFLVDVSGSMQGVLLEQTKNALSASLSKLN-PQDSFNIIAFNGETH-------LFSSSMKLASQGTIINATQWLS-- 395 (591)
Q Consensus 326 ~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~-~~d~f~Ii~F~~~~~-------~~~~~~~~~~~~~~~~a~~~i~-- 395 (591)
.-|.+|||.||||.|.+|..|-.....+...|. .+..+-|..|-+.+. .|...-.+.++.-+......+.
T Consensus 414 tvVtlviDnSGSMrGRpItvAatcAdilArtLeRcgVk~eIlGFTT~awkGg~sre~wlk~Gkp~~pgrlndlrhiiyks 493 (620)
T COG4547 414 TVVTLVIDNSGSMRGRPITVAATCADILARTLERCGVKVEILGFTTKAWKGGQSRETWLKRGKPAFPGRLNDLRHIIYKS 493 (620)
T ss_pred hhheeeeccCCCcCCcceehhHHHHHHHHHHHHHcCCceEEeeeeeccccCCccHHHHHhcCCCCCchhhhhHHHHHHhc
Confidence 346799999999999999988887777777774 477888888876431 2222222333322222222111
Q ss_pred ----------cCCC--C-C--CCch-HHHHHHHHHhhhcCCCCccEEEEEecCCCCCh-------hhHH----HHHHHHH
Q 007718 396 ----------SLVA--G-G--GTNI-LLPLKQAIKLLSDTSESIPLIFLITDGTVGDE-------RGIC----NEIKSYL 448 (591)
Q Consensus 396 ----------~l~~--~-G--gT~l-~~aL~~a~~~l~~~~~~~~~IillTDG~~~~~-------~~i~----~~v~~~~ 448 (591)
|+.. . | .-|+ +++|-+|-+.+-.++...+++++||||.+-+. .+.+ ..+.+.+
T Consensus 494 AdaPwrRARrnlGlmmreglLkeNiDGEal~wah~rl~gRpEqrkIlmmiSDGAPvddstlsvnpGnylerHLRaVieeI 573 (620)
T COG4547 494 ADAPWRRARRNLGLMMREGLLKENIDGEALMWAHQRLIGRPEQRKILMMISDGAPVDDSTLSVNPGNYLERHLRAVIEEI 573 (620)
T ss_pred cCCHHHHHHhhcchhhhcchhhccCChHHHHHHHHHHhcChhhceEEEEecCCCcccccccccCCchHHHHHHHHHHHHH
Confidence 1111 1 1 1233 57888888888777777889999999998432 2222 2222333
Q ss_pred hcCCCCCCeEEEEEcCCCCCHHHHHHHHHhCCCEEEEcCCCCchHHHHHHHHHH
Q 007718 449 TNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYYDSAYDPGSVDYRIRRFFTA 502 (591)
Q Consensus 449 ~~~~~~~~ri~t~GiG~~~~~~lL~~LA~~~~G~~~~v~~~~~l~~~~~~~~~~ 502 (591)
.. ...+.+.+||||.++..+.-+.. . +.+.+++...|...+..
T Consensus 574 Et--rSpveLlAIGighDvtRyYrrav--------t-iVdaeeL~gamteqLa~ 616 (620)
T COG4547 574 ET--RSPVELLAIGIGHDVTRYYRRAV--------T-IVDAEELAGAMTEQLAA 616 (620)
T ss_pred hc--CCchhheeeecccccchhhhhhe--------e-EecHHHhchHHHHHHHH
Confidence 22 23578999999999877664432 2 33456666555554443
No 69
>cd01478 Sec23-like Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles. The two main classes of vesicular carriers within the endocytic and the biosynthetic pathways are COP- and clathrin-coated vesicles. Formation of COPII vesicles requires the ordered assembly of the coat built from several cytosolic components GTPase Sar1, complexes of Sec23-Sec24 and Sec13-Sec31. The process is initiated by the conversion of GDP to GTP by the GTPase Sar1 which then recruits the heterodimeric complex of Sec23 and Sec24. This heterodimeric complex generates the pre-budding complex. The final step leading to membrane deformation and budding of COPII-coated vesicles is carried by the heterodimeric complex Sec13-Sec31. The members of this CD belong to the Sec23-like family. Sec 23 is very similar to Sec24. The Sec23 and Sec24
Probab=97.90 E-value=0.0011 Score=66.87 Aligned_cols=162 Identities=17% Similarity=0.093 Sum_probs=102.2
Q ss_pred CceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcCCCCeEEEEEeCCceEeee--cC----------cccCC---------
Q 007718 325 RKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFS--SS----------MKLAS--------- 383 (591)
Q Consensus 325 ~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~~~d~f~Ii~F~~~~~~~~--~~----------~~~~~--------- 383 (591)
|--++||||+|-. ...++.+|+++...|+.|+++.+|+||+|++.++.+. .. ...++
T Consensus 3 pp~~vFviDvs~~--~~el~~l~~sl~~~L~~lP~~a~VGlITfd~~V~~~~L~~~~~~~~~vf~g~~~~~~~~~~~~l~ 80 (267)
T cd01478 3 PPVFLFVVDTCMD--EEELDALKESLIMSLSLLPPNALVGLITFGTMVQVHELGFEECSKSYVFRGNKDYTAKQIQDMLG 80 (267)
T ss_pred CCEEEEEEECccC--HHHHHHHHHHHHHHHHhCCCCCEEEEEEECCEEEEEEcCCCcCceeeeccCCccCCHHHHHHHhc
Confidence 4569999999774 5679999999999999999999999999999975432 10 00000
Q ss_pred -----------------------------------HHHHHHHHHHHhcC----C--CCCCCchHHHHHHHHHhhhcC-CC
Q 007718 384 -----------------------------------QGTIINATQWLSSL----V--AGGGTNILLPLKQAIKLLSDT-SE 421 (591)
Q Consensus 384 -----------------------------------~~~~~~a~~~i~~l----~--~~GgT~l~~aL~~a~~~l~~~-~~ 421 (591)
...+..+++.|... . .+....++.||+.|..++... +.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~p~~~~~flvpl~e~~~~i~~lLe~L~~~~~~~~~~~r~~r~~G~Al~~A~~ll~~~~~~ 160 (267)
T cd01478 81 LGGPAMRPSASQHPGAGNPLPSAAASRFLLPVSQCEFTLTDLLEQLQPDPWPVPAGHRPLRCTGVALSIAVGLLEACFPN 160 (267)
T ss_pred cccccccccccCcCCccccccccccccEEEEHHHHHHHHHHHHHhCcccccccCCCCCCCCchHHHHHHHHHHHHhhcCC
Confidence 12333333333321 1 124567899999999998732 11
Q ss_pred CccEEEEEecCCCCChh------------------------------hHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHH
Q 007718 422 SIPLIFLITDGTVGDER------------------------------GICNEIKSYLTNTRSISPRICTFGVGLYCNHYF 471 (591)
Q Consensus 422 ~~~~IillTDG~~~~~~------------------------------~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~l 471 (591)
.--.|++++-|-++... +..+.+...+. ..+..+.+|+++. +.++-..
T Consensus 161 ~gGki~~F~sg~pT~GpG~l~~r~~~~~~r~~~d~~~~~~~~~~~a~~fY~~la~~~~-~~~vsvDlF~~s~-d~vglae 238 (267)
T cd01478 161 TGARIMLFAGGPCTVGPGAVVSTELKDPIRSHHDIDKDNAKYYKKAVKFYDSLAKRLA-ANGHAVDIFAGCL-DQVGLLE 238 (267)
T ss_pred CCcEEEEEECCCCCCCCceeeccccccccccccccccchhhhhhhHHHHHHHHHHHHH-hCCeEEEEEeccc-cccCHHH
Confidence 22356777777653100 01111111111 1235566776653 4578899
Q ss_pred HHHHHHhCCCEEEEcCCCC
Q 007718 472 LQILAQIGRGYYDSAYDPG 490 (591)
Q Consensus 472 L~~LA~~~~G~~~~v~~~~ 490 (591)
|..|++.|||..++..+..
T Consensus 239 m~~l~~~TGG~v~~~~~f~ 257 (267)
T cd01478 239 MKVLVNSTGGHVVLSDSFT 257 (267)
T ss_pred HHHHHHhcCcEEEEeCCcc
Confidence 9999999999988876654
No 70
>PLN00162 transport protein sec23; Provisional
Probab=97.75 E-value=0.0097 Score=68.81 Aligned_cols=176 Identities=17% Similarity=0.103 Sum_probs=110.7
Q ss_pred ccCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcCCCCeEEEEEeCCceEeee--c----------CcccCCH------
Q 007718 323 VFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFS--S----------SMKLASQ------ 384 (591)
Q Consensus 323 ~~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~~~d~f~Ii~F~~~~~~~~--~----------~~~~~~~------ 384 (591)
..|--++||||+|- ....++..|+++...|+.|+++.+|+||+|++.++.+. . +...++.
T Consensus 122 ~~pp~fvFvID~s~--~~~~l~~lk~sl~~~L~~LP~~a~VGlITF~s~V~~~~L~~~~~~~~~Vf~g~k~~t~~~l~~~ 199 (761)
T PLN00162 122 PSPPVFVFVVDTCM--IEEELGALKSALLQAIALLPENALVGLITFGTHVHVHELGFSECSKSYVFRGNKEVSKDQILEQ 199 (761)
T ss_pred CCCcEEEEEEecch--hHHHHHHHHHHHHHHHHhCCCCCEEEEEEECCEEEEEEcCCCCCcceEEecCCccCCHHHHHHH
Confidence 45678999999984 45678999999999999999999999999999875432 0 0001111
Q ss_pred --------------------------------------HHHHHHHHHHhcCC---C---CCCCchHHHHHHHHHhhhcC-
Q 007718 385 --------------------------------------GTIINATQWLSSLV---A---GGGTNILLPLKQAIKLLSDT- 419 (591)
Q Consensus 385 --------------------------------------~~~~~a~~~i~~l~---~---~GgT~l~~aL~~a~~~l~~~- 419 (591)
..+..+++.|.... + .....++.||+.|..++...
T Consensus 200 l~l~~~~~~~~~~~~~~~~~~~~~p~~~~fLvpl~e~~~~i~~lLe~L~~~~~~~~~~~rp~r~tG~AL~vA~~lL~~~~ 279 (761)
T PLN00162 200 LGLGGKKRRPAGGGIAGARDGLSSSGVNRFLLPASECEFTLNSALEELQKDPWPVPPGHRPARCTGAALSVAAGLLGACV 279 (761)
T ss_pred hccccccccccccccccccccccCCCccceeEEHHHHHHHHHHHHHhhhccccccCCCCCCCccHHHHHHHHHHHHhhcc
Confidence 23444444444332 1 13466899999999988632
Q ss_pred CCCccEEEEEecCCCCChh------------------------------hHHHHHHHHHhcCCCCCCeEEEEEcCCCCCH
Q 007718 420 SESIPLIFLITDGTVGDER------------------------------GICNEIKSYLTNTRSISPRICTFGVGLYCNH 469 (591)
Q Consensus 420 ~~~~~~IillTDG~~~~~~------------------------------~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~ 469 (591)
++..-.|++++-|-++.+. ...+.+...+.+ .++.+.+|+++. +.++-
T Consensus 280 ~~~gGrI~~F~sgppT~GpG~v~~r~~~~~~rsh~di~k~~~~~~~~a~~fY~~la~~~~~-~gisvDlF~~s~-dqvgl 357 (761)
T PLN00162 280 PGTGARIMAFVGGPCTEGPGAIVSKDLSEPIRSHKDLDKDAAPYYKKAVKFYEGLAKQLVA-QGHVLDVFACSL-DQVGV 357 (761)
T ss_pred CCCceEEEEEeCCCCCCCCceeecccccccccCccccccchhhhcchHHHHHHHHHHHHHH-cCceEEEEEccc-cccCH
Confidence 1222356666667654110 011111111111 245566776654 45788
Q ss_pred HHHHHHHHhCCCEEEEcCCCCc--hHHHHHHHHHH
Q 007718 470 YFLQILAQIGRGYYDSAYDPGS--VDYRIRRFFTA 502 (591)
Q Consensus 470 ~lL~~LA~~~~G~~~~v~~~~~--l~~~~~~~~~~ 502 (591)
..|+.+++.|||..+...+.+. +.+.+.+++.+
T Consensus 358 aem~~l~~~TGG~v~~~~sF~~~~f~~~l~r~~~r 392 (761)
T PLN00162 358 AEMKVAVERTGGLVVLAESFGHSVFKDSLRRVFER 392 (761)
T ss_pred HHHhhhHhhcCcEEEEeCCcChHHHHHHHHHHhcc
Confidence 8999999999999887666543 44445555553
No 71
>PF04285 DUF444: Protein of unknown function (DUF444); InterPro: IPR006698 This entry is represented by Thermus phage phiYS40, Orf56. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches [].
Probab=97.71 E-value=0.00071 Score=71.55 Aligned_cols=162 Identities=16% Similarity=0.164 Sum_probs=96.4
Q ss_pred CceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcCCC-CeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCCCCCCC
Q 007718 325 RKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQ-DSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAGGGT 403 (591)
Q Consensus 325 ~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~~~-d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~~~GgT 403 (591)
..=+++++|+||||...+-..||.....+..-|..+ .++-++...++...+ .++.++ +. ....+|||
T Consensus 246 ~AVv~~lmDvSGSM~~~~K~lak~ff~~l~~fL~~~Y~~Ve~vfI~H~t~A~-----EVdEe~------FF-~~~esGGT 313 (421)
T PF04285_consen 246 NAVVFCLMDVSGSMGEFKKDLAKRFFFWLYLFLRRKYENVEIVFIRHHTEAK-----EVDEEE------FF-HSRESGGT 313 (421)
T ss_pred cEEEEEEEeCCCCCchHHHHHHHHHHHHHHHHHHhccCceEEEEEeecCceE-----EecHHH------hc-ccCCCCCe
Confidence 345678999999999877778887654443333321 234444444443321 123221 11 34566999
Q ss_pred chHHHHHHHHHhhhcC---CCCccEEEEEecCCCC--ChhhHHHHHHHHHhcCCCCCCeEEEEE-cCCCCC---HHHHHH
Q 007718 404 NILLPLKQAIKLLSDT---SESIPLIFLITDGTVG--DERGICNEIKSYLTNTRSISPRICTFG-VGLYCN---HYFLQI 474 (591)
Q Consensus 404 ~l~~aL~~a~~~l~~~---~~~~~~IillTDG~~~--~~~~i~~~v~~~~~~~~~~~~ri~t~G-iG~~~~---~~lL~~ 474 (591)
-+..|++.+.+++... ....-.++-+|||.-+ |.....+.+.+.+.. .++.|+++ |+.... ...++.
T Consensus 314 ~vSSA~~l~~~ii~erypp~~wNiY~~~~SDGDN~~~D~~~~~~ll~~~llp----~~~~f~Y~Ei~~~~~~~~~~~~~~ 389 (421)
T PF04285_consen 314 RVSSAYELALEIIEERYPPSDWNIYVFHASDGDNWSSDNERCVELLEEELLP----VCNYFGYGEITQPGRHSSWREYEE 389 (421)
T ss_pred EehHHHHHHHHHHHhhCChhhceeeeEEcccCccccCCCHHHHHHHHHHHHH----hcCeEEEEEeccCccchHHHHHHH
Confidence 9999999999998753 2344588999999975 334455666633321 14555543 331212 234555
Q ss_pred HHHhCCCE-EEEcCCCCchHHHHHHHHHH
Q 007718 475 LAQIGRGY-YDSAYDPGSVDYRIRRFFTA 502 (591)
Q Consensus 475 LA~~~~G~-~~~v~~~~~l~~~~~~~~~~ 502 (591)
+.....-. ...|.+.+++...+..+|.+
T Consensus 390 ~~~~~~~f~~~~i~~~~di~~~~r~~f~~ 418 (421)
T PF04285_consen 390 LKESHDNFAMVRIREKEDIYPVFRELFKK 418 (421)
T ss_pred HhhcCCCeEEEEeCCHHHHHHHHHHHhcc
Confidence 54443332 34577788888888888865
No 72
>PF06707 DUF1194: Protein of unknown function (DUF1194); InterPro: IPR010607 This family consists of several hypothetical Rhizobiales specific proteins of around 270 residues in length. The function of this family is unknown.
Probab=97.67 E-value=0.0032 Score=60.09 Aligned_cols=175 Identities=18% Similarity=0.175 Sum_probs=109.9
Q ss_pred CceEEEEEeCCcCCCcchHHHHHHHHHHHHH------hcCC----CCeEEEEEeCCc--eEeeecCcccCCHHHHHHHHH
Q 007718 325 RKDVVFLVDVSGSMQGVLLEQTKNALSASLS------KLNP----QDSFNIIAFNGE--THLFSSSMKLASQGTIINATQ 392 (591)
Q Consensus 325 ~~~ivfviD~SgSM~g~~i~~ak~al~~~l~------~L~~----~d~f~Ii~F~~~--~~~~~~~~~~~~~~~~~~a~~ 392 (591)
..++++.+|+|+||....+..-++.+...|. .+.. .-.+.++.|++. .....+=..-.+.++.+.+..
T Consensus 3 dlaLvLavDvS~SVD~~E~~lQ~~G~A~Al~dp~V~~Ai~~g~~g~Iav~~~eWsg~~~q~~~v~Wt~i~~~~da~a~A~ 82 (205)
T PF06707_consen 3 DLALVLAVDVSGSVDADEYRLQREGYAAALRDPEVIAAILSGPIGRIAVAVVEWSGPGRQRVVVPWTRIDSPADAEAFAA 82 (205)
T ss_pred cceeeeeeeccCCCCHHHHHHHHHHHHHHHCCHHHHHHHhcCCCCeEEEEEEEecCCCCceEEeCCEEeCCHHHHHHHHH
Confidence 4578999999999998777766666655442 2221 346777888873 333333334456778888877
Q ss_pred HHhcCC--CCCCCchHHHHHHHHHhhhcCCC--CccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCC
Q 007718 393 WLSSLV--AGGGTNILLPLKQAIKLLSDTSE--SIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCN 468 (591)
Q Consensus 393 ~i~~l~--~~GgT~l~~aL~~a~~~l~~~~~--~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~ 468 (591)
.|.... ..++|.|..||..+..++.+.+. ..+.|=+-.||..|.........+..... .++.|..+.|+....
T Consensus 83 ~l~~~~r~~~~~Taig~Al~~a~~ll~~~~~~~~RrVIDvSGDG~~N~G~~p~~~ard~~~~---~GitINgL~I~~~~~ 159 (205)
T PF06707_consen 83 RLRAAPRRFGGRTAIGSALDFAAALLAQNPFECWRRVIDVSGDGPNNQGPRPVTSARDAAVA---AGITINGLAILDDDP 159 (205)
T ss_pred HHHhCCCCCCCCchHHHHHHHHHHHHHhCCCCCceEEEEECCCCCCCCCCCccHHHHHHHHH---CCeEEeeeEecCCCC
Confidence 787553 34779999999999999987543 34566677899987664444444544432 358888888875432
Q ss_pred -------HHHHHHHHHhCCCEE-EEcCCCCchHHHHHH-HHHHh
Q 007718 469 -------HYFLQILAQIGRGYY-DSAYDPGSVDYRIRR-FFTAA 503 (591)
Q Consensus 469 -------~~lL~~LA~~~~G~~-~~v~~~~~l~~~~~~-~~~~~ 503 (591)
.++-+.+- .|.|.| ..+.+.++..+.|.+ ++.++
T Consensus 160 ~~~~~L~~yy~~~VI-gGpgAFV~~a~~~~df~~AirrKL~rEi 202 (205)
T PF06707_consen 160 FGGADLDAYYRRCVI-GGPGAFVETARGFEDFAEAIRRKLIREI 202 (205)
T ss_pred CccccHHHHHhhhcc-cCCCceEEEcCCHHHHHHHHHHHHHHHh
Confidence 23323222 244433 445555666666544 44443
No 73
>TIGR02877 spore_yhbH sporulation protein YhbH. This protein family, typified by YhbH in Bacillus subtilis, is found in nearly every endospore-forming bacterium and in no other genome (but note that the trusted cutoff score is set high to exclude a single high-scoring sequence from Nitrosococcus oceani ATCC 19707, which is classified in the Gammaproteobacteria). The gene in Bacillus subtilis was shown to be in the regulon of the sporulation sigma factor, sigma-E, and its mutation was shown to create a sporulation defect.
Probab=97.65 E-value=0.0012 Score=68.22 Aligned_cols=159 Identities=14% Similarity=0.135 Sum_probs=91.0
Q ss_pred cCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcCCC-CeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCCCCCC
Q 007718 324 FRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQ-DSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAGGG 402 (591)
Q Consensus 324 ~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~~~-d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~~~Gg 402 (591)
...=+++++|+||||....-..||..-..+-.-|.-+ .++-++.-.++...+ .++.++. . .....||
T Consensus 201 s~AV~fc~MDvSGSM~~~~K~lak~ff~~ly~FL~~~Y~~VeivFI~H~t~Ak-----EVdEeeF------F-~~~EsGG 268 (371)
T TIGR02877 201 SNAVVIAMMDTSGSMGQFKKYIARSFFFWMVKFLRTKYENVEICFISHHTEAK-----EVTEEEF------F-HKGESGG 268 (371)
T ss_pred CcEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHhccCceEEEEEeecCeeE-----EcCHHHh------c-ccCCCCC
Confidence 3445678999999999877777887644333333321 366666666665442 2343321 1 3455699
Q ss_pred CchHHHHHHHHHhhhcC---CCCccEEEEEecCCCC--ChhhHHHHHHHHHhcCCCCCCeEEEEE-cCC-CCCHHHHHHH
Q 007718 403 TNILLPLKQAIKLLSDT---SESIPLIFLITDGTVG--DERGICNEIKSYLTNTRSISPRICTFG-VGL-YCNHYFLQIL 475 (591)
Q Consensus 403 T~l~~aL~~a~~~l~~~---~~~~~~IillTDG~~~--~~~~i~~~v~~~~~~~~~~~~ri~t~G-iG~-~~~~~lL~~L 475 (591)
|-+..|++.+.+.+... ....-..+-.|||.-+ |.....+.+++.+.. ++.|+.| |+. .....+....
T Consensus 269 T~vSSA~~l~~eII~~rYpp~~wNIY~f~aSDGDNw~~D~~~c~~ll~~llp~-----~~~f~Y~Ei~~~~~~~~l~~~y 343 (371)
T TIGR02877 269 TYCSSGYKKALEIIDERYNPARYNIYAFHFSDGDNLTSDNERAVKLVRKLLEV-----CNLFGYGEIMPYGYSNTLKNKF 343 (371)
T ss_pred eEehHHHHHHHHHHHhhCChhhCeeEEEEcccCCCccCCcHHHHHHHHHHHHh-----hheEEEEEecCCCCcchHHHHH
Confidence 99999999999998753 2334578999999975 334455666654321 3455543 333 2223333222
Q ss_pred HH-hCCCE--EEEcCCCCchHHHHHHH
Q 007718 476 AQ-IGRGY--YDSAYDPGSVDYRIRRF 499 (591)
Q Consensus 476 A~-~~~G~--~~~v~~~~~l~~~~~~~ 499 (591)
.. ..... ...+.+.+++-..+..+
T Consensus 344 ~~~i~~~~f~~~~I~~~~dIyp~~r~l 370 (371)
T TIGR02877 344 KNEIKDPNFVPLIIRDKEDLYPALKKF 370 (371)
T ss_pred HhhhcCCCeEEEEeCCHHHHHHHHHHh
Confidence 22 11222 23455556665555544
No 74
>COG3552 CoxE Protein containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.54 E-value=0.00043 Score=70.50 Aligned_cols=108 Identities=22% Similarity=0.289 Sum_probs=67.0
Q ss_pred ccCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcCCCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCC--CC
Q 007718 323 VFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLV--AG 400 (591)
Q Consensus 323 ~~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~--~~ 400 (591)
..+..+++++|+||||++- ...---+...+.+.. .++.+..|++........+ ...+.+.|++.+..-. .+
T Consensus 216 ~~~~~lvvL~DVSGSm~~y--s~~~L~l~hAl~q~~--~R~~~F~F~TRLt~vT~~l---~~rD~~~Al~~~~a~v~dw~ 288 (395)
T COG3552 216 RRKPPLVVLCDVSGSMSGY--SRIFLHLLHALRQQR--SRVHVFLFGTRLTRVTHML---RERDLEDALRRLSAQVKDWD 288 (395)
T ss_pred cCCCCeEEEEecccchhhh--HHHHHHHHHHHHhcc--cceeEEEeechHHHHHHHh---ccCCHHHHHHHHHhhccccc
Confidence 3567899999999999752 211112222233333 4566899999865543332 2445566666666333 24
Q ss_pred CCCchHHHHHHHHHhhhcC-CCCccEEEEEecCCCCCh
Q 007718 401 GGTNILLPLKQAIKLLSDT-SESIPLIFLITDGTVGDE 437 (591)
Q Consensus 401 GgT~l~~aL~~a~~~l~~~-~~~~~~IillTDG~~~~~ 437 (591)
|||.|++++..-++..... -.....|+++|||-..+.
T Consensus 289 ggTrig~tl~aF~~~~~~~~L~~gA~VlilsDg~drd~ 326 (395)
T COG3552 289 GGTRIGNTLAAFLRRWHGNVLSGGAVVLILSDGLDRDD 326 (395)
T ss_pred CCcchhHHHHHHHccccccccCCceEEEEEecccccCC
Confidence 9999999987655542221 123358999999998654
No 75
>PF11443 DUF2828: Domain of unknown function (DUF2828); InterPro: IPR024553 This uncharacterised domain is found in eukaryotic, bacterial and viral proteins.
Probab=97.48 E-value=0.00052 Score=74.71 Aligned_cols=104 Identities=19% Similarity=0.276 Sum_probs=78.0
Q ss_pred ceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcCCCC-eEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCCCCCCCc
Q 007718 326 KDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQD-SFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAGGGTN 404 (591)
Q Consensus 326 ~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~~~d-~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~~~GgT~ 404 (591)
.+.+.|.|+||||.|.+++.+. +|..++..+..+. +=.+|+|+++.+.. ..+..++.+-++++.++..++.||
T Consensus 341 ~n~iav~DvSGSM~~~pm~vai-aLgll~ae~~~~pf~~~~ITFs~~P~~~-----~i~g~~l~ekv~~~~~~~wg~nTn 414 (534)
T PF11443_consen 341 ENCIAVCDVSGSMSGPPMDVAI-ALGLLIAELNKGPFKGRFITFSENPQLH-----KIKGDTLREKVRFIRRMDWGMNTN 414 (534)
T ss_pred cceEEEEecCCccCccHHHHHH-HHHHHHHHhcccccCCeEEeecCCceEE-----EecCCCHHHHHHHHHhCCcccCCc
Confidence 6899999999999999887665 4556667765432 22489999997764 234447888888899999999999
Q ss_pred hHHHHHHHHHhhhcC----CCCccEEEEEecCCCC
Q 007718 405 ILLPLKQAIKLLSDT----SESIPLIFLITDGTVG 435 (591)
Q Consensus 405 l~~aL~~a~~~l~~~----~~~~~~IillTDG~~~ 435 (591)
+..+++..+...... .+=++.+|++||=+.+
T Consensus 415 ~~aVFdlIL~~Av~~~l~~e~M~k~lfV~SDMeFD 449 (534)
T PF11443_consen 415 FQAVFDLILETAVKNKLKQEDMPKRLFVFSDMEFD 449 (534)
T ss_pred HHHHHHHHHHHHHHcCCChHHCCceEEEEeccccc
Confidence 999998888765443 1235689999987754
No 76
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.47 E-value=0.0051 Score=68.55 Aligned_cols=178 Identities=19% Similarity=0.186 Sum_probs=112.6
Q ss_pred EEEEEecCCCCCCCccCceEEEEEeCCcC-CCcchHHHHHHHHHHHHHhcC--CCCeEEEEEeCCceEeeecC-------
Q 007718 309 FCLYLFPGKSQSRKVFRKDVVFLVDVSGS-MQGVLLEQTKNALSASLSKLN--PQDSFNIIAFNGETHLFSSS------- 378 (591)
Q Consensus 309 f~~~~~P~~~~~~~~~~~~ivfviD~SgS-M~g~~i~~ak~al~~~l~~L~--~~d~f~Ii~F~~~~~~~~~~------- 378 (591)
+.=++.|.+-.-+.+.|.-++||+|+|-| |+..-++.+++++..-|+.|+ ++.+|++++|++..+.+.-.
T Consensus 278 ~vE~iAP~eYmlR~P~Pavy~FliDVS~~a~ksG~L~~~~~slL~~LD~lpgd~Rt~igfi~fDs~ihfy~~~~~~~qp~ 357 (887)
T KOG1985|consen 278 VVEFIAPSEYMLRPPQPAVYVFLIDVSISAIKSGYLETVARSLLENLDALPGDPRTRIGFITFDSTIHFYSVQGDLNQPQ 357 (887)
T ss_pred eEEEecCcccccCCCCCceEEEEEEeehHhhhhhHHHHHHHHHHHhhhcCCCCCcceEEEEEeeceeeEEecCCCcCCCc
Confidence 44467788776677888999999999965 554578999999999999998 78899999999986543210
Q ss_pred ------------------cc--cCCHHHHHHHHHHHhcCCC---CCCCchHHHHHHHHHhhhcCCCCccEEEEEecCCCC
Q 007718 379 ------------------MK--LASQGTIINATQWLSSLVA---GGGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVG 435 (591)
Q Consensus 379 ------------------~~--~~~~~~~~~a~~~i~~l~~---~GgT~l~~aL~~a~~~l~~~~~~~~~IillTDG~~~ 435 (591)
++ ....++++.+++.+..+-. .-+..++.||+.|+.++....| + |+++.-+.++
T Consensus 358 mm~vsdl~d~flp~pd~lLv~L~~ck~~i~~lL~~lp~~F~~~~~t~~alGpALkaaf~li~~~GG--r-i~vf~s~lPn 434 (887)
T KOG1985|consen 358 MMIVSDLDDPFLPMPDSLLVPLKECKDLIETLLKTLPEMFQDTRSTGSALGPALKAAFNLIGSTGG--R-ISVFQSTLPN 434 (887)
T ss_pred eeeeccccccccCCchhheeeHHHHHHHHHHHHHHHHHHHhhccCcccccCHHHHHHHHHHhhcCC--e-EEEEeccCCC
Confidence 00 0112445555555554322 2566899999999999876433 3 4444444443
Q ss_pred Ch---------------hhH-------HHHHHHHHhcCCCCCCeEEEEEcC-CCCCHHHHHHHHHhCCCEEEEcCCC
Q 007718 436 DE---------------RGI-------CNEIKSYLTNTRSISPRICTFGVG-LYCNHYFLQILAQIGRGYYDSAYDP 489 (591)
Q Consensus 436 ~~---------------~~i-------~~~v~~~~~~~~~~~~ri~t~GiG-~~~~~~lL~~LA~~~~G~~~~v~~~ 489 (591)
-+ .+. ...-|+......+.++.|--|-+. .+.|-.-|..|++.+||..++....
T Consensus 435 lG~G~L~~rEdp~~~~s~~~~qlL~~~t~FYK~~a~~cs~~qI~VDlFl~s~qY~DlAsLs~LskySgG~~y~YP~f 511 (887)
T KOG1985|consen 435 LGAGKLKPREDPNVRSSDEDSQLLSPATDFYKDLALECSKSQICVDLFLFSEQYTDLASLSCLSKYSGGQVYYYPSF 511 (887)
T ss_pred CCccccccccccccccchhhhhccCCCchHHHHHHHHhccCceEEEEEeecccccchhhhhccccccCceeEEccCC
Confidence 10 000 011233322222333443333333 4567788999999999987765443
No 77
>PTZ00395 Sec24-related protein; Provisional
Probab=97.46 E-value=0.03 Score=65.91 Aligned_cols=225 Identities=17% Similarity=0.115 Sum_probs=131.7
Q ss_pred CccCceEEEEEeCCc-CCCcchHHHHHHHHHHHHHhcC-CCCeEEEEEeCCceEeee--cC-------------------
Q 007718 322 KVFRKDVVFLVDVSG-SMQGVLLEQTKNALSASLSKLN-PQDSFNIIAFNGETHLFS--SS------------------- 378 (591)
Q Consensus 322 ~~~~~~ivfviD~Sg-SM~g~~i~~ak~al~~~l~~L~-~~d~f~Ii~F~~~~~~~~--~~------------------- 378 (591)
++.|-.++||||+|- |+...-+..+-++++..|+.++ ++.+|+||+|++..+-|. +.
T Consensus 949 ~p~PP~YvFLIDVS~~AVkSGLl~tacesIK~sLDsL~dpRTRVGIITFDSsLHFYNLks~l~~~~~~~~~~~~l~qPQM 1028 (1560)
T PTZ00395 949 NMLPPYFVFVVECSYNAIYNNITYTILEGIRYAVQNVKCPQTKIAIITFNSSIYFYHCKGGKGVSGEEGDGGGGSGNHQV 1028 (1560)
T ss_pred CCCCCEEEEEEECCHHHHhhChHHHHHHHHHHHHhcCCCCCcEEEEEEecCcEEEEecCcccccccccccccccCCCceE
Confidence 456778999999995 5555567888889999998886 578999999999864221 10
Q ss_pred ---------cccC-----------CHHHHHHHHHHHhcCC---CCCCCchHHHHHHHHHhhhcCCCCccEEEEEecCCCC
Q 007718 379 ---------MKLA-----------SQGTIINATQWLSSLV---AGGGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVG 435 (591)
Q Consensus 379 ---------~~~~-----------~~~~~~~a~~~i~~l~---~~GgT~l~~aL~~a~~~l~~~~~~~~~IillTDG~~~ 435 (591)
.++. ..+.++.+++.|..+- ...+..++.||+.|+.++....+.-++++|.+ ..++
T Consensus 1029 LVVSDLDDPFLPlP~ddLLVnL~ESRevIe~LLDkLPemFt~t~~~esCLGSALqAA~~aLk~~GGGGKIiVF~S-SLPn 1107 (1560)
T PTZ00395 1029 IVMSDVDDPFLPLPLEDLFFGCVEEIDKINTLIDTIKSVSTTMQSYGSCGNSALKIAMDMLKERNGLGSICMFYT-TTPN 1107 (1560)
T ss_pred EeecCCccCcCCCCccCeeechHHHHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHhcCCCceEEEEEc-CCCC
Confidence 0111 1234555555555432 23567899999999999976443334555554 4442
Q ss_pred Ch--------------------hhHHHHHHHHHhcCCCCCCeEEEEEcCCCC--CHHHHHHHHHhCCCEEEEcCCCC---
Q 007718 436 DE--------------------RGICNEIKSYLTNTRSISPRICTFGVGLYC--NHYFLQILAQIGRGYYDSAYDPG--- 490 (591)
Q Consensus 436 ~~--------------------~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~--~~~lL~~LA~~~~G~~~~v~~~~--- 490 (591)
.. ....+.+...+.+ ..+.+.+|.+.- .++ +-..|-.|++.|||..++.....
T Consensus 1108 iGpGaLK~Re~~~KEk~Ll~pqd~FYK~LA~ECsk-~qISVDLFLfSs-qYvDVDVATLg~Lsr~TGGqlyyYPnFna~r 1185 (1560)
T PTZ00395 1108 CGIGAIKELKKDLQENFLEVKQKIFYDSLLLDLYA-FNISVDIFIISS-NNVRVCVPSLQYVAQNTGGKILFVENFLWQK 1185 (1560)
T ss_pred CCCCcccccccccccccccccchHHHHHHHHHHHh-cCCceEEEEccC-cccccccccccchhcccceeEEEeCCCcccc
Confidence 10 1112222222222 234556666532 223 34568899999999987765542
Q ss_pred chHHHHHHHHHHhcc-ceEE--eEEEEecCCCcceeeeC-------------CCCCCcCCCCeEEEEEEEeCCCC
Q 007718 491 SVDYRIRRFFTAASS-VFLT--NMTLETSKHLNSLELFP-------------SHIPDFCLECPLIVSGRYSGNFG 549 (591)
Q Consensus 491 ~l~~~~~~~~~~~~~-p~~~--~v~l~~~~~~~~~~v~P-------------~~i~~l~~g~~l~v~g~~~~~~~ 549 (591)
+-.....++...+.. +..- -++++...++.....+. -.+|.+-.++.+.+.-++.++..
T Consensus 1186 D~~KL~~DL~r~LTre~iGyEAVMRVRCS~GLrVs~fyG~GnnF~s~rStDLLaLP~Id~DqSfaVeLk~DEkL~ 1260 (1560)
T PTZ00395 1186 DYKEIYMNIMDTLTSEDIAYCCELKLRYSHHMSVKKLFCCNNNFNSIISVDTIKIPKIRHDQTFAFLLNYSDISE 1260 (1560)
T ss_pred cHHHHHHHHHHHhhccceeeEEEEEEECCCCeEEEEEeccCCccccccccccccccccCCCceEEEEEEeccccC
Confidence 122233344444443 3332 34555545543333331 23677778888888888876543
No 78
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=97.40 E-value=0.0033 Score=67.70 Aligned_cols=150 Identities=17% Similarity=0.218 Sum_probs=105.2
Q ss_pred cCceEEEEEeCCcCCCc---------------chHHHHHHHHHHHHHhcCCCCeEEEEEeCCceE------e-e----ec
Q 007718 324 FRKDVVFLVDVSGSMQG---------------VLLEQTKNALSASLSKLNPQDSFNIIAFNGETH------L-F----SS 377 (591)
Q Consensus 324 ~~~~ivfviD~SgSM~g---------------~~i~~ak~al~~~l~~L~~~d~f~Ii~F~~~~~------~-~----~~ 377 (591)
...++++-||-+.|-.. ...++|..++-..|+...++.+|--..||.... . | .+
T Consensus 284 ~~lnf~vgIDfTaSNg~p~~~sSLHyi~p~~~N~Y~~Ai~~vG~~lq~ydsdk~fpa~GFGakip~~~~vs~~f~ln~~~ 363 (529)
T KOG1327|consen 284 EQLNFTVGIDFTASNGDPRNPSSLHYIDPHQPNPYEQAIRSVGETLQDYDSDKLFPAFGFGAKIPPDGQVSHEFVLNFNP 363 (529)
T ss_pred ceeeeEEEEEEeccCCCCCCCCcceecCCCCCCHHHHHHHHHhhhhcccCCCCccccccccccCCCCcccccceeecCCC
Confidence 45778888888888432 467888888888888888899999999998821 1 1 00
Q ss_pred Cccc-CCHHHHHHH-HHHHhcCCCCCCCchHHHHHHHHHhhhcCC---CCccEEEEEecCCCCChhhHHHHHHHHHhcCC
Q 007718 378 SMKL-ASQGTIINA-TQWLSSLVAGGGTNILLPLKQAIKLLSDTS---ESIPLIFLITDGTVGDERGICNEIKSYLTNTR 452 (591)
Q Consensus 378 ~~~~-~~~~~~~~a-~~~i~~l~~~GgT~l~~aL~~a~~~l~~~~---~~~~~IillTDG~~~~~~~i~~~v~~~~~~~~ 452 (591)
.-.. ..-+.+-+| .+.+.+++..|.|++..-|..+.+...+.. ...-+++++|||.+++..++.+.+-++ .
T Consensus 364 ~~~~c~Gi~gVl~aY~~~lp~v~l~GPTnFaPII~~va~~a~~~~~~~~qY~VLlIitDG~vTdm~~T~~AIV~A----S 439 (529)
T KOG1327|consen 364 EDPECRGIEGVLEAYRKALPNVQLYGPTNFSPIINHVARIAQQSGNTAGQYHVLLIITDGVVTDMKETRDAIVSA----S 439 (529)
T ss_pred CCCccccHHHHHHHHHhhcccccccCCCccHHHHHHHHHHHHHhccCCcceEEEEEEeCCccccHHHHHHHHHhh----c
Confidence 0000 112233333 344557788899999999999988876543 333478999999999987776665544 3
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHh
Q 007718 453 SISPRICTFGVGLYCNHYFLQILAQI 478 (591)
Q Consensus 453 ~~~~ri~t~GiG~~~~~~lL~~LA~~ 478 (591)
.....|.-+|+|+. +...|+.|-..
T Consensus 440 ~lPlSIIiVGVGd~-df~~M~~lD~d 464 (529)
T KOG1327|consen 440 DLPLSIIIVGVGDA-DFDMMRELDGD 464 (529)
T ss_pred cCCeEEEEEEeCCC-CHHHHHHhhcC
Confidence 45688999999954 88888888544
No 79
>smart00187 INB Integrin beta subunits (N-terminal portion of extracellular region). Portion of beta integrins that lies N-terminal to their EGF-like repeats. Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Beta integrins are proposed to have a von Willebrand factor type-A "insert" or "I" -like domain (although this remains to be confirmed).
Probab=97.34 E-value=0.011 Score=62.19 Aligned_cols=187 Identities=16% Similarity=0.128 Sum_probs=107.2
Q ss_pred eEEEEEecCCCCCCCccCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhc---CCCCeEEEEEeCCceEe-ee-------
Q 007718 308 IFCLYLFPGKSQSRKVFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKL---NPQDSFNIIAFNGETHL-FS------- 376 (591)
Q Consensus 308 ~f~~~~~P~~~~~~~~~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L---~~~d~f~Ii~F~~~~~~-~~------- 376 (591)
.|.+.+.+. +..|.|++||+|.|+||.. .++.+|+....+.+.| ..+-|+++-+|-+.... +.
T Consensus 87 ~f~~~~~~a-----~~yPvDLYyLMDlS~SM~d-dl~~lk~lg~~L~~~m~~it~n~rlGfGsFVDK~v~P~~~t~p~~l 160 (423)
T smart00187 87 NFTLTVRQA-----EDYPVDLYYLMDLSYSMKD-DLDNLKSLGDDLAREMKGLTSNFRLGFGSFVDKTVSPFVSTRPEKL 160 (423)
T ss_pred EEEEEEEec-----ccCccceEEEEeCCccHHH-HHHHHHHHHHHHHHHHHhcccCceeeEEEeecCccCCcccCCHHHh
Confidence 455555443 3468999999999999974 7888888777666554 56788998888775310 00
Q ss_pred --c---------------CcccCCHHHHHHHHHHHhcCCCCCCCch----HHHHHHHH---HhhhcCCCCccEEEEEecC
Q 007718 377 --S---------------SMKLASQGTIINATQWLSSLVAGGGTNI----LLPLKQAI---KLLSDTSESIPLIFLITDG 432 (591)
Q Consensus 377 --~---------------~~~~~~~~~~~~a~~~i~~l~~~GgT~l----~~aL~~a~---~~l~~~~~~~~~IillTDG 432 (591)
| ...+.| ++..+..+.+++...+|+-+- ..||-.|. +.+.=+++..+.+||.||+
T Consensus 161 ~~PC~~~~~~c~p~f~f~~~L~LT-~~~~~F~~~V~~~~iSgN~D~PEgG~DAimQaaVC~~~IGWR~~a~rllv~~TDa 239 (423)
T smart00187 161 ENPCPNYNLTCEPPYGFKHVLSLT-DDTDEFNEEVKKQRISGNLDAPEGGFDAIMQAAVCTEQIGWREDARRLLVFSTDA 239 (423)
T ss_pred cCCCcCCCCCcCCCcceeeeccCC-CCHHHHHHHHhhceeecCCcCCcccHHHHHHHHhhccccccCCCceEEEEEEcCC
Confidence 0 001222 355666666776666655442 23333332 1111124567899999998
Q ss_pred CCC---C----------------------------hhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHhCCC
Q 007718 433 TVG---D----------------------------ERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRG 481 (591)
Q Consensus 433 ~~~---~----------------------------~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~LA~~~~G 481 (591)
... | .-..+..+.+.+.+.. -..||++- .. ...+.+.|+..=.|
T Consensus 240 ~fH~AGDGkLaGIv~PNDg~CHL~~~g~Yt~s~~~DYPSi~ql~~kL~e~n--I~~IFAVT-~~--~~~~Y~~Ls~lipg 314 (423)
T smart00187 240 GFHFAGDGKLAGIVQPNDGQCHLDNNGEYTMSTTQDYPSIGQLNQKLAENN--INPIFAVT-KK--QVSLYKELSALIPG 314 (423)
T ss_pred CccccCCcceeeEecCCCCcceeCCCCCcCccCcCCCCCHHHHHHHHHhcC--ceEEEEEc-cc--chhHHHHHHHhcCc
Confidence 753 0 0012344454444321 14577762 12 23355777766666
Q ss_pred EEEEc--CCCCchHHHHHHHHHHhccc
Q 007718 482 YYDSA--YDPGSVDYRIRRFFTAASSV 506 (591)
Q Consensus 482 ~~~~v--~~~~~l~~~~~~~~~~~~~p 506 (591)
...-+ .|.+.+-+.+.+.+.++.+.
T Consensus 315 s~vg~Ls~DSsNIv~LI~~aY~~i~S~ 341 (423)
T smart00187 315 SSVGVLSEDSSNVVELIKDAYNKISSR 341 (423)
T ss_pred ceeeecccCcchHHHHHHHHHHhhceE
Confidence 55432 45566777777777776543
No 80
>PF03731 Ku_N: Ku70/Ku80 N-terminal alpha/beta domain; InterPro: IPR005161 The Ku heterodimer (composed of Ku70 P12956 from SWISSPROT and Ku80 P13010 from SWISSPROT) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway. This is the N-terminal alpha/beta domain. This domain only makes a small contribution to the dimer interface. The domain comprises a six stranded beta sheet of the Rossman fold [].; PDB: 1JEQ_A 1JEY_A.
Probab=97.25 E-value=0.0014 Score=64.44 Aligned_cols=107 Identities=21% Similarity=0.294 Sum_probs=62.2
Q ss_pred EEEEEeCCcCCCc------chHHHHHHHHHHHHHhc---CCCCeEEEEEeCCceEee-------------ecCcccCCHH
Q 007718 328 VVFLVDVSGSMQG------VLLEQTKNALSASLSKL---NPQDSFNIIAFNGETHLF-------------SSSMKLASQG 385 (591)
Q Consensus 328 ivfviD~SgSM~g------~~i~~ak~al~~~l~~L---~~~d~f~Ii~F~~~~~~~-------------~~~~~~~~~~ 385 (591)
++|+||+|.||.. ..++.+.+++..++.+. .+.|.++|+.||++...- .+ +...+.+
T Consensus 2 ~vflID~s~sM~~~~~~~~~~l~~al~~i~~~~~~ki~~~~kD~vgvvl~gt~~t~n~~~~~~~~~i~~l~~-l~~~~~~ 80 (224)
T PF03731_consen 2 TVFLIDVSPSMFEPSSESESPLEEALKAIEDLMQQKIISSPKDEVGVVLFGTDETNNPDEDSGYENIFVLQP-LDPPSAE 80 (224)
T ss_dssp EEEEEE-SCGGGS-BTTCS-HHHHHHHHHHHHHHHHHHTT---EEEEEEES-SS-BST-TTT-STTEEEEEE-CC--BHH
T ss_pred EEEEEECCHHHCCCCCCcchhHHHHHHHHHHHHHHHHcCCCCCeEEEEEEcCCCCCCcccccCCCceEEeec-CCccCHH
Confidence 7999999999983 25888888888877654 457999999999774321 11 1222333
Q ss_pred HHHHHHHHHhc-------CCCCCCCchHHHHHHHHHhhhc--C--CCCccEEEEEecCCCC
Q 007718 386 TIINATQWLSS-------LVAGGGTNILLPLKQAIKLLSD--T--SESIPLIFLITDGTVG 435 (591)
Q Consensus 386 ~~~~a~~~i~~-------l~~~GgT~l~~aL~~a~~~l~~--~--~~~~~~IillTDG~~~ 435 (591)
.+....+.+.. .......++..||-.|..++.. . +-..+.|+|+||+..-
T Consensus 81 ~l~~L~~~~~~~~~~~~~~~~~~~~~l~~al~v~~~~~~~~~~~~k~~~krI~l~Td~d~p 141 (224)
T PF03731_consen 81 RLKELEELLKPGDKFENFFSGSDEGDLSDALWVASDMFRERTCKKKKNKKRIFLFTDNDGP 141 (224)
T ss_dssp HHHHHHTTSHHHHHHHHHC-SSS---HHHHHHHHHHHHHCHCTTS-ECEEEEEEEES-SST
T ss_pred HHHHHHHhhcccccccccCCCCCccCHHHHHHHHHHHHHHHhhcccCCCcEEEEEeCCCCC
Confidence 44333322222 1122445799999999998874 2 2345789999998753
No 81
>PF07002 Copine: Copine; InterPro: IPR010734 This represents a conserved region approximately 180 residues long within eukaryotic copines. Copines are Ca2+-dependent phospholipid-binding proteins that are thought to be involved in membrane-trafficking, and may also be involved in cell division and growth [].
Probab=97.18 E-value=0.0056 Score=55.73 Aligned_cols=120 Identities=16% Similarity=0.198 Sum_probs=85.3
Q ss_pred chHHHHHHHHHHHHHhcCCCCeEEEEEeCCceE---ee---ecCc------ccCCHH-HHHHHHHHHhcCCCCCCCchHH
Q 007718 341 VLLEQTKNALSASLSKLNPQDSFNIIAFNGETH---LF---SSSM------KLASQG-TIINATQWLSSLVAGGGTNILL 407 (591)
Q Consensus 341 ~~i~~ak~al~~~l~~L~~~d~f~Ii~F~~~~~---~~---~~~~------~~~~~~-~~~~a~~~i~~l~~~GgT~l~~ 407 (591)
...++|-.++..+|.....+..|.+..||.... .. ++.. .-..-+ -++.-.+.+.+++..|-|++..
T Consensus 11 N~Y~~ai~~vg~il~~Yd~dk~~p~~GFGa~~~~~~~vsh~F~ln~~~~~p~~~Gi~gvl~~Y~~~~~~v~l~GPT~fap 90 (146)
T PF07002_consen 11 NPYQQAIRAVGEILQDYDSDKMIPAYGFGAKIPPDYSVSHCFPLNGNPQNPECQGIDGVLEAYRKALPKVQLSGPTNFAP 90 (146)
T ss_pred CHHHHHHHHHHHHHHhhccCCccceeccCCcCCCCcccccceeeecCCCCCcccCHHHHHHHHHHHhhheEECCCccHHH
Confidence 467889999999999998888999999997632 11 1110 001122 2333345566788889999999
Q ss_pred HHHHHHHhhhc---CCCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcC
Q 007718 408 PLKQAIKLLSD---TSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVG 464 (591)
Q Consensus 408 aL~~a~~~l~~---~~~~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG 464 (591)
-|+.|.+.... ....--+++++|||..+|..+..+.+.+.- ...+.|..+|+|
T Consensus 91 iI~~a~~~a~~~~~~~~~Y~iLlIlTDG~i~D~~~T~~aIv~AS----~~PlSIIiVGVG 146 (146)
T PF07002_consen 91 IINHAAKIAKQSNQNGQQYFILLILTDGQITDMEETIDAIVEAS----KLPLSIIIVGVG 146 (146)
T ss_pred HHHHHHHHHhhhccCCceEEEEEEecccccccHHHHHHHHHHHc----cCCeEEEEEEeC
Confidence 99999988763 223334789999999999888877766552 345789999987
No 82
>KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.07 Score=50.56 Aligned_cols=134 Identities=16% Similarity=0.194 Sum_probs=89.5
Q ss_pred ceEEEEEeCCcCCCc-----chHHHHHHHHHHHHHh-c--CCCCeEEEEEeCC-ceEeeecCcccCCHHHHHHHHHHHhc
Q 007718 326 KDVVFLVDVSGSMQG-----VLLEQTKNALSASLSK-L--NPQDSFNIIAFNG-ETHLFSSSMKLASQGTIINATQWLSS 396 (591)
Q Consensus 326 ~~ivfviD~SgSM~g-----~~i~~ak~al~~~l~~-L--~~~d~f~Ii~F~~-~~~~~~~~~~~~~~~~~~~a~~~i~~ 396 (591)
-..+++||.|--|.. ++++.-|+++..+... + +|...++|++..+ .++.+.... ...-..+..+..
T Consensus 4 Eatmi~iDNse~mrNgDy~PtRf~aQ~daVn~v~~~K~~snpEntvGiitla~a~~~vLsT~T-----~d~gkils~lh~ 78 (259)
T KOG2884|consen 4 EATMICIDNSEYMRNGDYLPTRFQAQKDAVNLVCQAKLRSNPENTVGIITLANASVQVLSTLT-----SDRGKILSKLHG 78 (259)
T ss_pred ceEEEEEeChHHhhcCCCChHHHHHHHHHHHHHHHhhhcCCcccceeeEeccCCCceeeeecc-----ccchHHHHHhcC
Confidence 347899999988863 5889999999887643 4 3567999999988 667665432 123345677889
Q ss_pred CCCCCCCchHHHHHHHHHhhhcCCCC---ccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCC
Q 007718 397 LVAGGGTNILLPLKQAIKLLSDTSES---IPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCN 468 (591)
Q Consensus 397 l~~~GgT~l~~aL~~a~~~l~~~~~~---~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~ 468 (591)
++..|+-++..+|+.|.-.|..+.+. .|.|+|+..-....+.+.....++... .++.|-.|-+|...+
T Consensus 79 i~~~g~~~~~~~i~iA~lalkhRqnk~~~~riVvFvGSpi~e~ekeLv~~akrlkk----~~Vaidii~FGE~~~ 149 (259)
T KOG2884|consen 79 IQPHGKANFMTGIQIAQLALKHRQNKNQKQRIVVFVGSPIEESEKELVKLAKRLKK----NKVAIDIINFGEAEN 149 (259)
T ss_pred CCcCCcccHHHHHHHHHHHHHhhcCCCcceEEEEEecCcchhhHHHHHHHHHHHHh----cCeeEEEEEeccccc
Confidence 99999999999999887777665332 345555532222344555555555433 236666666775443
No 83
>TIGR00627 tfb4 transcription factor tfb4. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.76 E-value=0.05 Score=54.88 Aligned_cols=167 Identities=14% Similarity=0.147 Sum_probs=97.7
Q ss_pred ceEEEEEeCCcCCCc--------chHHHHHHHHHHHHH---hcCCCCeEEEEEeCCce-EeeecCcc-------------
Q 007718 326 KDVVFLVDVSGSMQG--------VLLEQTKNALSASLS---KLNPQDSFNIIAFNGET-HLFSSSMK------------- 380 (591)
Q Consensus 326 ~~ivfviD~SgSM~g--------~~i~~ak~al~~~l~---~L~~~d~f~Ii~F~~~~-~~~~~~~~------------- 380 (591)
.-+++|||++.--+| ..+..+-+++..|++ .+....++.||+..+.. +.+.+...
T Consensus 3 slL~vvlD~np~~W~~~~~~~~~~~l~~~l~sllvF~NahL~l~~~N~vaVIAs~~~~~~~LYps~~~~~~~~~~~~~~~ 82 (279)
T TIGR00627 3 SLLVVIIEANPCSWGMLALAHGKRTISKVLRAIVVFLNAHLAFNANNKLAVIASHSQDNKYLYPSTRCEDRNASELDPKR 82 (279)
T ss_pred cEEEEEEeCCHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHhcCccCCEEEEEecCCcceEEecCCcccccccccccccc
Confidence 347889999876552 245555566655654 24567799999886553 33323210
Q ss_pred ----------cCCHHHHHHHHHHHhcCC----CCCCCchHHHHHHHHHhhhcC-------CCCccEEEEEecCCCCChhh
Q 007718 381 ----------LASQGTIINATQWLSSLV----AGGGTNILLPLKQAIKLLSDT-------SESIPLIFLITDGTVGDERG 439 (591)
Q Consensus 381 ----------~~~~~~~~~a~~~i~~l~----~~GgT~l~~aL~~a~~~l~~~-------~~~~~~IillTDG~~~~~~~ 439 (591)
..+..-+++..+.++... ..+.|.|..||..|+-.++.. ..-..+|++++-+. +...+
T Consensus 83 ~~~~~y~~f~~v~~~v~~~l~~l~~~~~~~~~~~~~s~lagals~ALcyinr~~~~~~~~~~~~~RIlii~~s~-~~~~q 161 (279)
T TIGR00627 83 LRELLYRDFRTVDETIVEEIKPLMAHADKHMKKDSRTVLAGALSDALGYINRSEQSETASEKLKSRILVISITP-DMALQ 161 (279)
T ss_pred ccchhccchhHHHHHHHHHHHHHHhhchhcccccccccchhHHHhhhhhhcccccccccCcCCcceEEEEECCC-CchHH
Confidence 000011222223333211 225677899999998887542 12234676666543 33333
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHhCCCEEEEcCCCCchHH
Q 007718 440 ICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYYDSAYDPGSVDY 494 (591)
Q Consensus 440 i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~LA~~~~G~~~~v~~~~~l~~ 494 (591)
....+ +.+....+.+++|.+++++...+..+|++++..|||.|..+.+.+.+.+
T Consensus 162 Yi~~m-n~Ifaaqk~~I~Idv~~L~~e~~~~~lqQa~~~TgG~Y~~~~~~~~L~q 215 (279)
T TIGR00627 162 YIPLM-NCIFSAQKQNIPIDVVSIGGDFTSGFLQQAADITGGSYLHVKKPQGLLQ 215 (279)
T ss_pred HHHHH-HHHHHHHHcCceEEEEEeCCccccHHHHHHHHHhCCEEeccCCHhHHHH
Confidence 33222 2222223456999999998765688999999999999998887665443
No 84
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=96.69 E-value=0.023 Score=56.27 Aligned_cols=170 Identities=16% Similarity=0.180 Sum_probs=104.0
Q ss_pred CceEEEEEeCCcCCCcchHHHHH-----HHHHHHHHhc---CCCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhc
Q 007718 325 RKDVVFLVDVSGSMQGVLLEQTK-----NALSASLSKL---NPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSS 396 (591)
Q Consensus 325 ~~~ivfviD~SgSM~g~~i~~ak-----~al~~~l~~L---~~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~ 396 (591)
=+.+++++|+|.+|....+.-.+ +-+..++-.+ +|-.+++|+...+....+... ... |.+.-+..+.+
T Consensus 87 iRhl~l~lD~Seam~e~Df~p~r~a~vikya~~Fv~eFf~qNPiSqlsii~irdg~a~~~s~-~~g---npq~hi~~lkS 162 (421)
T COG5151 87 IRHLHLILDVSEAMDESDFLPTRRANVIKYAEGFVPEFFSQNPISQLSIISIRDGCAKYTSS-MDG---NPQAHIGQLKS 162 (421)
T ss_pred hheeEEEEEhhhhhhhhhccchHHHHHHHHHHHHhHHHhccCCchheeeeehhhhHHHHhhh-cCC---CHHHHHHHhhc
Confidence 47899999999999864332222 2222222222 345678888877664332222 223 33444555554
Q ss_pred CC-CCCCCchHHHHHHHHHhhhcC-CCCcc-EEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHH
Q 007718 397 LV-AGGGTNILLPLKQAIKLLSDT-SESIP-LIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQ 473 (591)
Q Consensus 397 l~-~~GgT~l~~aL~~a~~~l~~~-~~~~~-~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~ 473 (591)
+. ..|.-.|..||+.|...+... ....| ++|++..=...|+..+.+.+.+.+.. .+|+..+|+... -.+.+
T Consensus 163 ~rd~~gnfSLqNaLEmar~~l~~~~~H~trEvLiifgS~st~DPgdi~~tid~Lv~~----~IrV~~igL~ae--vaicK 236 (421)
T COG5151 163 KRDCSGNFSLQNALEMARIELMKNTMHGTREVLIIFGSTSTRDPGDIAETIDKLVAY----NIRVHFIGLCAE--VAICK 236 (421)
T ss_pred ccccCCChhHHhHHHHhhhhhcccccccceEEEEEEeecccCCCccHHHHHHHHHhh----ceEEEEEeehhH--HHHHH
Confidence 44 458888999999985444433 22234 34444333345777787777776543 489999988654 46788
Q ss_pred HHHHhC----CCEEEEcCCCCchHHHHHHHHHHhccceE
Q 007718 474 ILAQIG----RGYYDSAYDPGSVDYRIRRFFTAASSVFL 508 (591)
Q Consensus 474 ~LA~~~----~G~~~~v~~~~~l~~~~~~~~~~~~~p~~ 508 (591)
.|..++ .|.|..+-+.. -+..++.++..|.-
T Consensus 237 eickaTn~~~e~~y~v~vde~----Hl~el~~E~~~P~~ 271 (421)
T COG5151 237 EICKATNSSTEGRYYVPVDEG----HLSELMRELSHPTD 271 (421)
T ss_pred HHHhhcCcCcCceeEeeecHH----HHHHHHHhcCCCCC
Confidence 888887 78887766643 45567777766643
No 85
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.64 E-value=0.18 Score=56.90 Aligned_cols=224 Identities=15% Similarity=0.159 Sum_probs=129.7
Q ss_pred ccCceEEEEEeCCc--CCCcchHHHHHHHHHHHHHhcC---CCCeEEEEEeCCceEeeecC-------------------
Q 007718 323 VFRKDVVFLVDVSG--SMQGVLLEQTKNALSASLSKLN---PQDSFNIIAFNGETHLFSSS------------------- 378 (591)
Q Consensus 323 ~~~~~ivfviD~Sg--SM~g~~i~~ak~al~~~l~~L~---~~d~f~Ii~F~~~~~~~~~~------------------- 378 (591)
..|-.++|+||+|- .|.| -...+-++++.+|..|+ ++.+++|++|+...+.|-..
T Consensus 415 p~ppafvFmIDVSy~Ai~~G-~~~a~ce~ik~~l~~lp~~~p~~~Vgivtfd~tvhFfnl~s~L~qp~mliVsdv~dvfv 493 (1007)
T KOG1984|consen 415 PKPPAFVFMIDVSYNAISNG-AVKAACEAIKSVLEDLPREEPNIRVGIVTFDKTVHFFNLSSNLAQPQMLIVSDVDDVFV 493 (1007)
T ss_pred CCCceEEEEEEeehhhhhcc-hHHHHHHHHHHHHhhcCccCCceEEEEEEecceeEeeccCccccCceEEEeeccccccc
Confidence 45778999999984 4555 45667788888888876 47899999999986533210
Q ss_pred ------ccc--CCHHHHHHHHHHHhcCCCC-CC--CchHHHHHHHHHhhhcCCCCccEEEEE------------------
Q 007718 379 ------MKL--ASQGTIINATQWLSSLVAG-GG--TNILLPLKQAIKLLSDTSESIPLIFLI------------------ 429 (591)
Q Consensus 379 ------~~~--~~~~~~~~a~~~i~~l~~~-Gg--T~l~~aL~~a~~~l~~~~~~~~~Iill------------------ 429 (591)
.+. .+..-++.+++.|..+-.+ +- |-+..+|+.|+..+...+ .-+.+++.
T Consensus 494 Pf~~g~~V~~~es~~~i~~lLd~Ip~mf~~sk~pes~~g~alqaa~lalk~~~-gGKl~vF~s~Lpt~g~g~kl~~r~D~ 572 (1007)
T KOG1984|consen 494 PFLDGLFVNPNESRKVIELLLDSIPTMFQDSKIPESVFGSALQAAKLALKAAD-GGKLFVFHSVLPTAGAGGKLSNRDDR 572 (1007)
T ss_pred ccccCeeccchHHHHHHHHHHHHhhhhhccCCCCchhHHHHHHHHHHHHhccC-CceEEEEecccccccCcccccccchh
Confidence 011 1123455566666655544 33 457899999998887643 22333332
Q ss_pred ----ecCCCC---ChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHhCCCEEEEcCCCCch---HHHHHHH
Q 007718 430 ----TDGTVG---DERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYYDSAYDPGSV---DYRIRRF 499 (591)
Q Consensus 430 ----TDG~~~---~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~LA~~~~G~~~~v~~~~~l---~~~~~~~ 499 (591)
||++-+ -.......+.+...+. +..+.+|.+-- ..+|...|-.+.+.+||..+..+..... ...+.++
T Consensus 573 ~l~~t~kek~l~~pq~~~y~~LA~e~v~~-g~svDlF~t~~-ayvDvAtlg~v~~~TgG~vy~Y~~F~a~~D~~rl~nDL 650 (1007)
T KOG1984|consen 573 RLIGTDKEKNLLQPQDKTYTTLAKEFVES-GCSVDLFLTPN-AYVDVATLGVVPALTGGQVYKYYPFQALTDGPRLLNDL 650 (1007)
T ss_pred hhhcccchhhccCcchhHHHHHHHHHHHh-CceEEEEEccc-ceeeeeeecccccccCceeEEecchhhcccHHHHHHHH
Confidence 222211 0112233333332221 34566666522 2346666777788999998776654322 3445556
Q ss_pred HHHhccceEEeEEEEe--cCCCcceeee-------C--CCCCCcCCCCeEEEEEEEeCCCCc
Q 007718 500 FTAASSVFLTNMTLET--SKHLNSLELF-------P--SHIPDFCLECPLIVSGRYSGNFGD 550 (591)
Q Consensus 500 ~~~~~~p~~~~v~l~~--~~~~~~~~v~-------P--~~i~~l~~g~~l~v~g~~~~~~~~ 550 (591)
...+..+.--++.++. ..++...+-+ | -.++.|=.+..+.|--++.++.++
T Consensus 651 ~~~vtk~~gf~a~mrvRtStGirv~~f~Gnf~~~~~tDiela~lD~dkt~~v~fkhDdkLq~ 712 (1007)
T KOG1984|consen 651 VRNVTKKQGFDAVMRVRTSTGIRVQDFYGNFLMRNPTDIELAALDCDKTLTVEFKHDDKLQD 712 (1007)
T ss_pred HHhcccceeeeeEEEEeecCceeeeeeechhhhcCCCCccccccccCceeEEEEeccccccC
Confidence 6666666555554443 2333222222 2 235666778888888888776543
No 86
>TIGR00578 ku70 ATP-dependent DNA helicase ii, 70 kDa subunit (ku70). Proteins in this family are involved in non-homologous end joining, a process used for the repair of double stranded DNA breaks. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Cutoff does not detect the putative ku70 homologs in yeast.
Probab=96.46 E-value=0.05 Score=61.13 Aligned_cols=109 Identities=19% Similarity=0.305 Sum_probs=72.5
Q ss_pred CceEEEEEeCCcCCCc--------chHHHHHHHHHHHHHhc---CCCCeEEEEEeCCceE----------eeecCcccCC
Q 007718 325 RKDVVFLVDVSGSMQG--------VLLEQTKNALSASLSKL---NPQDSFNIIAFNGETH----------LFSSSMKLAS 383 (591)
Q Consensus 325 ~~~ivfviD~SgSM~g--------~~i~~ak~al~~~l~~L---~~~d~f~Ii~F~~~~~----------~~~~~~~~~~ 383 (591)
.--|+|+||+|.||.. +++..+.+++..++++. .++|.++|+.||++.. .+.+ +...+
T Consensus 10 keailflIDvs~sM~~~~~~~~~~s~~~~al~~i~~l~q~kIis~~~D~vGivlfgT~~t~n~~~~~~i~v~~~-L~~p~ 88 (584)
T TIGR00578 10 RDSLIFLVDASKAMFEESQGEDELTPFDMSIQCIQSVYTSKIISSDKDLLAVVFYGTEKDKNSVNFKNIYVLQE-LDNPG 88 (584)
T ss_pred eeEEEEEEECCHHHcCCCcCcCcCChHHHHHHHHHHHHHhcCCCCCCCeEEEEEEeccCCCCccCCCceEEEee-CCCCC
Confidence 3468999999999984 46778888888888764 5789999999998632 1222 22334
Q ss_pred HHHHHHHHHHHhc-----C--CCC-CC-CchHHHHHHHHHhhhcC--CCCccEEEEEecCCC
Q 007718 384 QGTIINATQWLSS-----L--VAG-GG-TNILLPLKQAIKLLSDT--SESIPLIFLITDGTV 434 (591)
Q Consensus 384 ~~~~~~a~~~i~~-----l--~~~-Gg-T~l~~aL~~a~~~l~~~--~~~~~~IillTDG~~ 434 (591)
.+.+.+..+.+.. + ..+ +. ..+..+|-.+.+++... +-..+.|+++||-..
T Consensus 89 a~~i~~L~~l~~~~~~~~~~~~~~~~~~~~l~daL~~~~~~f~~~~~k~~~kRI~lfTd~D~ 150 (584)
T TIGR00578 89 AKRILELDQFKGDQGPKKFRDTYGHGSDYSLSEVLWVCANLFSDVQFRMSHKRIMLFTNEDN 150 (584)
T ss_pred HHHHHHHHHHhhccCccchhhccCCCCCCcHHHHHHHHHHHHHhcchhhcCcEEEEECCCCC
Confidence 4554443332221 0 011 11 26799999999998753 224578999999864
No 87
>PF03850 Tfb4: Transcription factor Tfb4; InterPro: IPR004600 Members of this family are part of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. The core-TFIIH basal transcription factor complex has six subunits, this is the p34 subunit.; GO: 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent, 0000439 core TFIIH complex
Probab=96.34 E-value=0.3 Score=49.45 Aligned_cols=166 Identities=17% Similarity=0.169 Sum_probs=98.2
Q ss_pred eEEEEEeCCcCCCc-----chHHHHHHHHHHHHHh---cCCCCeEEEEEeCCce-EeeecCcc----------cCC----
Q 007718 327 DVVFLVDVSGSMQG-----VLLEQTKNALSASLSK---LNPQDSFNIIAFNGET-HLFSSSMK----------LAS---- 383 (591)
Q Consensus 327 ~ivfviD~SgSM~g-----~~i~~ak~al~~~l~~---L~~~d~f~Ii~F~~~~-~~~~~~~~----------~~~---- 383 (591)
=+++|+|++..-++ ..+..+-+++..|++. +....++.||+.+... +.+.|... ..+
T Consensus 3 LLvIILD~nP~~W~~~~~~~~l~~~l~~llvFlNahL~l~~~N~vaVIAs~~~~s~~LYP~~~~~~~~~~~~~~~~~~~~ 82 (276)
T PF03850_consen 3 LLVIILDTNPLAWGQLSDQLSLSQFLDSLLVFLNAHLALNHSNQVAVIASHSNSSKFLYPSPSSSESSNSGDVEMNSSDS 82 (276)
T ss_pred EEEEEEECCHHHHhhccccccHHHHHHHHHHHHHHHHhhCccCCEEEEEEcCCccEEEeCCCccccccCCCccccccccc
Confidence 47899999876654 2466666666666653 4567799999887664 33333322 000
Q ss_pred ---------HHH-HHHHHHHHhcCCCC----CCCchHHHHHHHHHhhhcC----C----CCccEEEEEecCCCCChhhHH
Q 007718 384 ---------QGT-IINATQWLSSLVAG----GGTNILLPLKQAIKLLSDT----S----ESIPLIFLITDGTVGDERGIC 441 (591)
Q Consensus 384 ---------~~~-~~~a~~~i~~l~~~----GgT~l~~aL~~a~~~l~~~----~----~~~~~IillTDG~~~~~~~i~ 441 (591)
++. .+++.+.+++.... ..+.|..||..|+-.+++. . .-..+|+++.-|.++...+.+
T Consensus 83 ~~y~~f~~v~~~v~~~l~~l~~~~~~~~~~~~~s~LagALS~ALCyINR~~~~~~~~~~~~~~RILv~~s~s~d~~~QYi 162 (276)
T PF03850_consen 83 NKYRQFRNVDETVLEELKKLMSETSESSDSTTSSLLAGALSMALCYINRISRESPSGGTSLKSRILVIVSGSPDSSSQYI 162 (276)
T ss_pred chhHHHHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHhhhhhcccCCCCCcCccEEEEEecCCCccHHHH
Confidence 011 12222223322221 1268899999888776543 1 122355553444444444444
Q ss_pred HHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHhCCCEEEEcCCCCchHH
Q 007718 442 NEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYYDSAYDPGSVDY 494 (591)
Q Consensus 442 ~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~LA~~~~G~~~~v~~~~~l~~ 494 (591)
..+.-. =.+++.++.|-++-+|. .+..+|++.+..|+|.|..+...+.+-+
T Consensus 163 ~~MN~i-FaAqk~~v~IDv~~L~~-~~s~fLqQa~d~T~G~y~~~~~~~~l~q 213 (276)
T PF03850_consen 163 PLMNCI-FAAQKQKVPIDVCKLGG-KDSTFLQQASDITGGIYLKVSKPEGLLQ 213 (276)
T ss_pred HHHHHH-HHHhcCCceeEEEEecC-CchHHHHHHHHHhCceeeccCccccHHH
Confidence 444322 22234568888888887 4788999999999999999888765543
No 88
>COG5148 RPN10 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=96.32 E-value=0.16 Score=46.94 Aligned_cols=141 Identities=21% Similarity=0.237 Sum_probs=96.2
Q ss_pred ceEEEEEeCCcCCC-c----chHHHHHHHHHHHHHhc---CCCCeEEEEEeCCce-EeeecCcccCCHHHHHHHHHHHhc
Q 007718 326 KDVVFLVDVSGSMQ-G----VLLEQTKNALSASLSKL---NPQDSFNIIAFNGET-HLFSSSMKLASQGTIINATQWLSS 396 (591)
Q Consensus 326 ~~ivfviD~SgSM~-g----~~i~~ak~al~~~l~~L---~~~d~f~Ii~F~~~~-~~~~~~~~~~~~~~~~~a~~~i~~ 396 (591)
-..+++||.|--|. | ++++.-|+++..+++.- .+...++++...... ..++.. ....-..+.++..
T Consensus 4 EatvvliDNse~s~NgDy~ptRFeAQkd~ve~if~~K~ndnpEntiGli~~~~a~p~vlsT~-----T~~~gkilt~lhd 78 (243)
T COG5148 4 EATVVLIDNSEASQNGDYLPTRFEAQKDAVESIFSKKFNDNPENTIGLIPLVQAQPNVLSTP-----TKQRGKILTFLHD 78 (243)
T ss_pred ceEEEEEeChhhhhcCCCCcHHHHHHHHHHHHHHHHHhcCCccceeeeeecccCCcchhccc-----hhhhhHHHHHhcc
Confidence 45789999987655 3 58999999999888653 346789999887653 333221 2344556777889
Q ss_pred CCCCCCCchHHHHHHHHHhhhcCCC---CccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHH
Q 007718 397 LVAGGGTNILLPLKQAIKLLSDTSE---SIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQ 473 (591)
Q Consensus 397 l~~~GgT~l~~aL~~a~~~l~~~~~---~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~ 473 (591)
++-.||.++..+|+.|.-.+..+.+ +.+.+.|+..-...++.+.+..+++...+ ++-|-.+-+|...|...|.
T Consensus 79 ~~~~g~a~~~~~lqiaql~lkhR~nk~q~qriVaFvgSpi~esedeLirlak~lkkn----nVAidii~fGE~~n~~~l~ 154 (243)
T COG5148 79 IRLHGGADIMRCLQIAQLILKHRDNKGQRQRIVAFVGSPIQESEDELIRLAKQLKKN----NVAIDIIFFGEAANMAGLF 154 (243)
T ss_pred ccccCcchHHHHHHHHHHHHhcccCCccceEEEEEecCcccccHHHHHHHHHHHHhc----CeeEEEEehhhhhhhhHHH
Confidence 9999999999999998877766532 23455555444445667777776666433 3667777788776765544
Q ss_pred HH
Q 007718 474 IL 475 (591)
Q Consensus 474 ~L 475 (591)
..
T Consensus 155 ef 156 (243)
T COG5148 155 EF 156 (243)
T ss_pred HH
Confidence 33
No 89
>COG2718 Uncharacterized conserved protein [Function unknown]
Probab=96.13 E-value=0.047 Score=56.13 Aligned_cols=161 Identities=17% Similarity=0.174 Sum_probs=89.1
Q ss_pred ceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcCC-CCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCCCCCCCc
Q 007718 326 KDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNP-QDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAGGGTN 404 (591)
Q Consensus 326 ~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~~-~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~~~GgT~ 404 (591)
.-++-++|+||||....-..||..-..+---|.- =+++-|+...+....+ .++..+ +. ..+..|||-
T Consensus 247 AVmfclMDvSGSM~~~~KdlAkrFF~lL~~FL~~kYenveivfIrHht~A~-----EVdE~d------FF-~~~esGGTi 314 (423)
T COG2718 247 AVMFCLMDVSGSMDQSEKDLAKRFFFLLYLFLRRKYENVEIVFIRHHTEAK-----EVDETD------FF-YSQESGGTI 314 (423)
T ss_pred eEEEEEEecCCCcchHHHHHHHHHHHHHHHHHhcccceeEEEEEeecCcce-----ecchhh------ce-eecCCCCeE
Confidence 3455678999999877777777764332222331 2355566665554332 122211 11 235569999
Q ss_pred hHHHHHHHHHhhhcC---CCCccEEEEEecCCCC--ChhhHHHHHHHHHhcCCCCCCeEEEEE-cCCCCCHHHH--HHHH
Q 007718 405 ILLPLKQAIKLLSDT---SESIPLIFLITDGTVG--DERGICNEIKSYLTNTRSISPRICTFG-VGLYCNHYFL--QILA 476 (591)
Q Consensus 405 l~~aL~~a~~~l~~~---~~~~~~IillTDG~~~--~~~~i~~~v~~~~~~~~~~~~ri~t~G-iG~~~~~~lL--~~LA 476 (591)
+..||+.+.+.+... .......+-.|||.-+ |.......+.+.+-. .++.|+.+ |-..-.+..| +.+-
T Consensus 315 vSSAl~~m~evi~ErYp~aeWNIY~fqaSDGDN~~dDserc~~ll~~~im~----~~~~y~Y~Eitq~~~H~t~~y~~~~ 390 (423)
T COG2718 315 VSSALKLMLEVIKERYPPAEWNIYAFQASDGDNWADDSERCVELLAKKLMP----VVQYYGYIEITQRRTHQTLEYEALQ 390 (423)
T ss_pred eHHHHHHHHHHHHhhCChhheeeeeeeecCCccccCCCHHHHHHHHHHHHH----hhhheEEEeeeecccchhhhhhhhh
Confidence 999999999998763 2334578999999864 334444555533321 12333332 1111112222 2221
Q ss_pred HhCCC-EEEEcCCCCchHHHHHHHHHH
Q 007718 477 QIGRG-YYDSAYDPGSVDYRIRRFFTA 502 (591)
Q Consensus 477 ~~~~G-~~~~v~~~~~l~~~~~~~~~~ 502 (591)
....- ....+.+.+++-..|..+|.+
T Consensus 391 ~~~dnFa~~~I~~~~Diypvfr~lf~k 417 (423)
T COG2718 391 GVFDNFAMQTIREPDDIYPVFRELFSK 417 (423)
T ss_pred ccCcchheeeecCHHHHHHHHHHHHhc
Confidence 11111 234567778888888888875
No 90
>COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]
Probab=95.87 E-value=0.56 Score=52.51 Aligned_cols=173 Identities=20% Similarity=0.216 Sum_probs=100.1
Q ss_pred EEecCCCCCCCccCceEEEEEeCCc-CCCcchHHHHHHHHHHHHHhcC---CCCeEEEEEeCCceEeeecCc--------
Q 007718 312 YLFPGKSQSRKVFRKDVVFLVDVSG-SMQGVLLEQTKNALSASLSKLN---PQDSFNIIAFNGETHLFSSSM-------- 379 (591)
Q Consensus 312 ~~~P~~~~~~~~~~~~ivfviD~Sg-SM~g~~i~~ak~al~~~l~~L~---~~d~f~Ii~F~~~~~~~~~~~-------- 379 (591)
++.|+.-......|-.+||+||+|- ||...-...+-+++...+..++ ++.+++|+.|++....|....
T Consensus 263 f~ap~~Y~~~~p~P~~yvFlIDVS~~a~~~g~~~a~~r~Il~~l~~~~~~dpr~kIaii~fD~sl~ffk~s~d~~~~~~~ 342 (861)
T COG5028 263 FLAPKEYSLRQPPPPVYVFLIDVSFEAIKNGLVKAAIRAILENLDQIPNFDPRTKIAIICFDSSLHFFKLSPDLDEQMLI 342 (861)
T ss_pred EecccceeeccCCCCEEEEEEEeehHhhhcchHHHHHHHHHhhccCCCCCCCcceEEEEEEcceeeEEecCCCCccceee
Confidence 5567665444556889999999994 4443355556666666666553 578999999999876543111
Q ss_pred --------ccCC-----------HHHHHHHHHHHhcCCCC-CCC--chHHHHHHHHHhhhcCCCCccEEEEE-e-----c
Q 007718 380 --------KLAS-----------QGTIINATQWLSSLVAG-GGT--NILLPLKQAIKLLSDTSESIPLIFLI-T-----D 431 (591)
Q Consensus 380 --------~~~~-----------~~~~~~a~~~i~~l~~~-GgT--~l~~aL~~a~~~l~~~~~~~~~Iill-T-----D 431 (591)
.+.. ..+++.+++.+..+-.+ +.+ .++.||+.|..++.. .+.. .|.++ | -
T Consensus 343 vsdld~pFlPf~s~~fv~pl~~~k~~~etLl~~~~~If~d~~~pk~~~G~aLk~a~~l~g~-~GGk-ii~~~stlPn~G~ 420 (861)
T COG5028 343 VSDLDEPFLPFPSGLFVLPLKSCKQIIETLLDRVPRIFQDNKSPKNALGPALKAAKSLIGG-TGGK-IIVFLSTLPNMGI 420 (861)
T ss_pred ecccccccccCCcchhcccHHHHHHHHHHHHHHhhhhhcccCCCccccCHHHHHHHHHhhc-cCce-EEEEeecCCCccc
Confidence 0011 12233455556655444 443 589999998887754 3443 44444 4 2
Q ss_pred CCCC-----------ChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHhCCCEEEEcCC
Q 007718 432 GTVG-----------DERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYYDSAYD 488 (591)
Q Consensus 432 G~~~-----------~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~LA~~~~G~~~~v~~ 488 (591)
|... ......+.+..+..+. ++.+.+|...- .+.+...|-.+++.++|..++...
T Consensus 421 Gkl~~r~d~e~~ll~c~d~fYk~~a~e~~k~-gIsvd~Flt~~-~yidvaTls~l~~~T~G~~~~Yp~ 486 (861)
T COG5028 421 GKLQLREDKESSLLSCKDSFYKEFAIECSKV-GISVDLFLTSE-DYIDVATLSHLCRYTGGQTYFYPN 486 (861)
T ss_pred ccccccccchhhhccccchHHHHHHHHHHHh-cceEEEEeccc-cccchhhhcchhhccCcceEEcCC
Confidence 3332 1111223333332221 34455555433 234777888999999999776544
No 91
>PF11265 Med25_VWA: Mediator complex subunit 25 von Willebrand factor type A; InterPro: IPR021419 The overall function of the full-length Med25 is efficiently to coordinate the transcriptional activation of RAR/RXR (retinoic acid receptor/retinoic X receptor) in higher eukaryotic cells. Human Med25 consists of several domains with different binding properties, the N-terminal, VWA domain which is this one, an SD2 domain from residues 229-381, a PTOV(B) or ACID domain from 395-545, an SD2 domain from residues 564-645 and a C-terminal NR box-containing domain (646-650) from 646-747. This VWA or von Willebrand factor type A domain when bound to RAR and the histone acetyltransferase CBP is responsible for recruiting Med1 to the rest of the Mediator complex [].
Probab=95.82 E-value=0.096 Score=50.87 Aligned_cols=110 Identities=19% Similarity=0.317 Sum_probs=72.3
Q ss_pred ccCceEEEEEeCCcCCCcchHHHHHHH-HHHHHHhcC-------------CCCeEEEEEeCCceEeeecCcc--cCCHHH
Q 007718 323 VFRKDVVFLVDVSGSMQGVLLEQTKNA-LSASLSKLN-------------PQDSFNIIAFNGETHLFSSSMK--LASQGT 386 (591)
Q Consensus 323 ~~~~~ivfviD~SgSM~g~~i~~ak~a-l~~~l~~L~-------------~~d~f~Ii~F~~~~~~~~~~~~--~~~~~~ 386 (591)
...+++|||||.+..|.. -|+..|.- +.-+++.+. ....+++|.|++.... ..... ..-..+
T Consensus 11 ~~~~~vVfvvEgTAalgp-y~~~Lkt~Yl~P~le~f~~g~~~e~~~~~~~~~t~y~LVvf~t~d~~-~~~~v~~~g~T~~ 88 (226)
T PF11265_consen 11 PPQAQVVFVVEGTAALGP-YWNTLKTNYLDPILEYFNGGPIAERDFGGDYSNTEYGLVVFNTADCY-PEPIVQRSGPTSS 88 (226)
T ss_pred CccceEEEEEecchhhhh-hHHHHHHHHHHHHHHHhcCCCcccccccccCCCceEEEEEEeccCCC-cccceeccCCcCC
Confidence 457899999999999964 56666543 444555553 2357899999876321 11111 112346
Q ss_pred HHHHHHHHhcCCCC-CC----CchHHHHHHHHHhhhcC---------CCCccEEEEEecCCC
Q 007718 387 IINATQWLSSLVAG-GG----TNILLPLKQAIKLLSDT---------SESIPLIFLITDGTV 434 (591)
Q Consensus 387 ~~~a~~~i~~l~~~-Gg----T~l~~aL~~a~~~l~~~---------~~~~~~IillTDG~~ 434 (591)
....++||++++.. || +.+.+||..|+.++... ....+..||++--.+
T Consensus 89 ~~~fl~~L~~I~f~GGG~e~~a~iaEGLa~AL~~fd~~~~~r~~~~~~~~~khcILI~nSpP 150 (226)
T PF11265_consen 89 PQKFLQWLDAIQFSGGGFESCAAIAEGLAEALQCFDDFKQMRQQQQQTDVQKHCILICNSPP 150 (226)
T ss_pred HHHHHHHHHccCcCCCCcccchhHHHHHHHHHHHhcchhhhccccCcccccceEEEEeCCCC
Confidence 67789999988765 33 34789999999988631 123578888887665
No 92
>COG3864 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.74 E-value=0.04 Score=55.00 Aligned_cols=93 Identities=20% Similarity=0.284 Sum_probs=58.8
Q ss_pred eEEEEEeCCcCCCcchHHHHHHHHHHHHHhcCCCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHh-cCCCCCCCch
Q 007718 327 DVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLS-SLVAGGGTNI 405 (591)
Q Consensus 327 ~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~-~l~~~GgT~l 405 (591)
.++.++|+||||....+.++..-+..++ -.++.+..++.-+..+..... +.. =+++. .+..+|||++
T Consensus 263 ~i~vaVDtSGS~~d~ei~a~~~Ei~~Il--~~~~~eltli~~D~~v~~~~~----~r~------g~~~~~~~~ggG~Tdf 330 (396)
T COG3864 263 KIVVAVDTSGSMTDAEIDAAMTEIFDIL--KNKNYELTLIECDNIVRRMYR----VRK------GRDMKKKLDGGGGTDF 330 (396)
T ss_pred heEEEEecCCCccHHHHHHHHHHHHHHH--hCCCcEEEEEEecchhhhhhc----cCC------cccCCcccCCCCCccc
Confidence 4889999999998766666665555555 234677888877777643211 111 12233 3455578999
Q ss_pred HHHHHHHHHhhhcCCCCccEEEEEecCCCCC
Q 007718 406 LLPLKQAIKLLSDTSESIPLIFLITDGTVGD 436 (591)
Q Consensus 406 ~~aL~~a~~~l~~~~~~~~~IillTDG~~~~ 436 (591)
..+++ .+.+. ......|++|||.-+.
T Consensus 331 ~Pvfe----ylek~-~~~~~lIyfTDG~gd~ 356 (396)
T COG3864 331 SPVFE----YLEKN-RMECFLIYFTDGMGDQ 356 (396)
T ss_pred cHHHH----HHHhh-cccceEEEEccCCCCc
Confidence 87765 33332 2236899999999543
No 93
>PF14415 DUF4424: Domain of unknown function (DUF4424)
Probab=95.40 E-value=0.6 Score=46.55 Aligned_cols=47 Identities=15% Similarity=0.273 Sum_probs=39.4
Q ss_pred EEEEEEEEEecccCCCceeeEEEEeecCC--------Ce----------eEEEEEEEECCEEEEEEEE
Q 007718 101 FVAFNGSWRVHCIMAGRQCDCTIAVPLGE--------RG----------SLLGVEVEIDGRSYQSKLI 150 (591)
Q Consensus 101 ~v~~~q~f~n~~~~~~~~~e~~y~fPL~~--------~a----------~V~~f~~~i~gk~i~~~v~ 150 (591)
+|+|..+|.| ++++.++....||||+ .+ .|.+|.+.||||.+..++.
T Consensus 2 ~I~V~Y~F~N---~t~~dv~~~VaFPlP~i~~~~~~d~~~~~p~~~~~n~i~~Fk~~VdGk~v~~q~~ 66 (253)
T PF14415_consen 2 RIRVRYVFRN---PTDQDVTVTVAFPLPDISGSPENDFAIAIPDNDSDNFIKDFKTTVDGKPVKPQVH 66 (253)
T ss_pred EEEEEEEEeC---CCCCcEEEEEEEeCCCCCCCccccccccccccCCcCccceEEEEECCEEcCceeE
Confidence 4788999999 6889999999999993 11 4666999999999988883
No 94
>KOG4465 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.37 E-value=0.1 Score=53.01 Aligned_cols=135 Identities=20% Similarity=0.197 Sum_probs=82.0
Q ss_pred CCccCceEEEEEeCCcCCCc----chHHHHHHHHHHHHHhcCCCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhc
Q 007718 321 RKVFRKDVVFLVDVSGSMQG----VLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSS 396 (591)
Q Consensus 321 ~~~~~~~ivfviD~SgSM~g----~~i~~ak~al~~~l~~L~~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~ 396 (591)
.++..+.+.+.+|+|+||.. +.+..-..|....+-.+......-.++|.++-... |.. .+-.+.+...++++
T Consensus 423 a~ptgkr~~laldvs~sm~~rv~~s~ln~reaaa~m~linlhnead~~~vaf~d~lte~-pft---kd~kigqv~~~~nn 498 (598)
T KOG4465|consen 423 AEPTGKRFCLALDVSASMNQRVLGSILNAREAAAAMCLINLHNEADSRCVAFCDELTEC-PFT---KDMKIGQVLDAMNN 498 (598)
T ss_pred CCCCCceEEEEEecchhhhhhhhccccchHHHHhhhheeeeccccceeEEEeccccccC-CCc---ccccHHHHHHHHhc
Confidence 34567899999999999984 33333223333344455555556788998885432 222 23345566666776
Q ss_pred CCCCCCCchHHHHHHHHHhhhcCCCCccEEEEEecCCCC-ChhhHHHHHHHHHhcCCCCCCeEEEEEcC
Q 007718 397 LVAGGGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVG-DERGICNEIKSYLTNTRSISPRICTFGVG 464 (591)
Q Consensus 397 l~~~GgT~l~~aL~~a~~~l~~~~~~~~~IillTDG~~~-~~~~i~~~v~~~~~~~~~~~~ri~t~GiG 464 (591)
+.+ |||+-+-++-+|-+. .-...+.|++||.... ++-.....+++......-+...+...|.-
T Consensus 499 i~~-g~tdcglpm~wa~en----nlk~dvfii~tdndt~ageihp~~aik~yrea~~i~dakliv~amq 562 (598)
T KOG4465|consen 499 IDA-GGTDCGLPMIWAQEN----NLKADVFIIFTDNDTFAGEIHPAEAIKEYREAMDIHDAKLIVCAMQ 562 (598)
T ss_pred CCC-CCCccCCceeehhhc----CCCccEEEEEecCcccccccCHHHHHHHHHHhcCCCcceEEEEEee
Confidence 654 778877777666442 2234578899998864 33344556666654443344666666653
No 95
>COG1721 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]
Probab=94.55 E-value=0.31 Score=52.63 Aligned_cols=104 Identities=21% Similarity=0.282 Sum_probs=71.5
Q ss_pred CceEEEEEeCCcCCCc-----chHHHHHHHHHHH-HHhcCCCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCC
Q 007718 325 RKDVVFLVDVSGSMQG-----VLLEQTKNALSAS-LSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLV 398 (591)
Q Consensus 325 ~~~ivfviD~SgSM~g-----~~i~~ak~al~~~-l~~L~~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~ 398 (591)
..++++++|+|.||.. .+++.+..++..+ ...+..+|++++..|++....+.+. ....+.+...++.+..+.
T Consensus 224 ~~~v~l~lD~~~~m~~~~~~~~~~e~av~~a~~la~~~l~~gd~vg~~~~~~~~~~~~~p--~~G~~~l~~~l~~l~~~~ 301 (416)
T COG1721 224 GRTVVLVLDASRSMLFGSGVASKFEEAVRAAASLAYAALKNGDRVGLLIFGGGGPKWIPP--SRGRRHLARILKALALLR 301 (416)
T ss_pred CceEEEEEeCCccccCCCCCccHHHHHHHHHHHHHHHHHhCCCeeEEEEECCCcceeeCC--CcchHHHHHHHHHhhccC
Confidence 6899999999999994 5888888776655 4567789999999999876544332 245677777878787777
Q ss_pred CCCC-CchHHHHHHHHHhhhcCCCCccEEEEEecCCC
Q 007718 399 AGGG-TNILLPLKQAIKLLSDTSESIPLIFLITDGTV 434 (591)
Q Consensus 399 ~~Gg-T~l~~aL~~a~~~l~~~~~~~~~IillTDG~~ 434 (591)
..+. |+...+... ...+ +...+.++++||=..
T Consensus 302 ~~~~~~~~~~~~~~-~~~l---~~~~~~~~~~~~l~~ 334 (416)
T COG1721 302 PAPEETDYIRRVSK-LDFL---PPRRPLVILITDLAR 334 (416)
T ss_pred CCCcchhHHHHhhh-hhcc---CcccceEEEeehhhc
Confidence 7744 444444322 2222 234456777777664
No 96
>KOG1986 consensus Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.03 E-value=10 Score=42.46 Aligned_cols=174 Identities=21% Similarity=0.203 Sum_probs=103.4
Q ss_pred cCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcCCCCeEEEEEeCCceEeee------------cCcccCCHHHHHHH-
Q 007718 324 FRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFS------------SSMKLASQGTIINA- 390 (591)
Q Consensus 324 ~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~~~d~f~Ii~F~~~~~~~~------------~~~~~~~~~~~~~a- 390 (591)
.|-=++||+|+- |..+.+..+|+++...++.|+++..+++|+|+..++... .....++.+.+.+.
T Consensus 120 ~ppvf~fVvDtc--~~eeeL~~LkssL~~~l~lLP~~alvGlItfg~~v~v~el~~~~~sk~~VF~G~ke~s~~q~~~~L 197 (745)
T KOG1986|consen 120 SPPVFVFVVDTC--MDEEELQALKSSLKQSLSLLPENALVGLITFGTMVQVHELGFEECSKSYVFSGNKEYSAKQLLDLL 197 (745)
T ss_pred CCceEEEEEeec--cChHHHHHHHHHHHHHHhhCCCcceEEEEEecceEEEEEcCCCcccceeEEeccccccHHHHHHHh
Confidence 355689999985 445789999999999999999999999999999865421 11122222222211
Q ss_pred ------------------------------HHHHhcCCC------CCC---CchHHHHHHHHHhhhcC-CCCccEEEEEe
Q 007718 391 ------------------------------TQWLSSLVA------GGG---TNILLPLKQAIKLLSDT-SESIPLIFLIT 430 (591)
Q Consensus 391 ------------------------------~~~i~~l~~------~Gg---T~l~~aL~~a~~~l~~~-~~~~~~IillT 430 (591)
.+.++.++. .|. -..+.||..|..++... ++....|++++
T Consensus 198 ~~~~~~~~~~~~~~~~~rFL~P~~~c~~~L~~lle~L~~d~wpV~~g~Rp~RcTG~Al~iA~~Ll~~c~p~~g~rIv~f~ 277 (745)
T KOG1986|consen 198 GLSGGAGKGSENQSASNRFLLPAQECEFKLTNLLEELQPDPWPVPPGHRPLRCTGVALSIASGLLEGCFPNTGARIVLFA 277 (745)
T ss_pred cCCcccccCCcccccchhhhccHHHHHHHHHHHHHHhcCCCCCCCCCCCcccchhHHHHHHHHHhcccCCCCcceEEEec
Confidence 111222221 111 22456777777776543 34456788888
Q ss_pred cCCCCC---------------------h------h---hHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHhCC
Q 007718 431 DGTVGD---------------------E------R---GICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGR 480 (591)
Q Consensus 431 DG~~~~---------------------~------~---~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~LA~~~~ 480 (591)
-|--+. . . ...+.+.+.+.+ .++-+.||+-++-. +--..|+.+++.+|
T Consensus 278 gGPcT~GpG~vv~~el~~piRshhdi~~d~a~y~kKa~KfY~~La~r~~~-~ghvlDifa~~lDQ-vGi~EMk~l~~~TG 355 (745)
T KOG1986|consen 278 GGPCTRGPGTVVSRELKEPIRSHHDIEKDNAPYYKKAIKFYEKLAERLAN-QGHVLDIFAAALDQ-VGILEMKPLVESTG 355 (745)
T ss_pred cCCCCcCCceecchhhcCCCcCcccccCcchHHHHHHHHHHHHHHHHHHh-CCceEeeeeeeccc-cchHHHHHHhhcCC
Confidence 883210 0 0 111222222222 34557788876633 34567999999999
Q ss_pred CEEEEcCCCC--chHHHHHHHHH
Q 007718 481 GYYDSAYDPG--SVDYRIRRFFT 501 (591)
Q Consensus 481 G~~~~v~~~~--~l~~~~~~~~~ 501 (591)
|....-.+.+ -....+++++.
T Consensus 356 G~lvl~dsF~~s~Fk~sfqR~f~ 378 (745)
T KOG1986|consen 356 GVLVLGDSFNTSIFKQSFQRIFT 378 (745)
T ss_pred cEEEEecccchHHHHHHHHHHhc
Confidence 9987655543 33455555555
No 97
>COG5242 TFB4 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription / DNA replication, recombination, and repair]
Probab=92.12 E-value=12 Score=36.07 Aligned_cols=147 Identities=12% Similarity=0.106 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHh-c--CCCCeEEEEE-eCCceEeeecCccc---------------------CCHHHHHHHHHHHhcC
Q 007718 343 LEQTKNALSASLSK-L--NPQDSFNIIA-FNGETHLFSSSMKL---------------------ASQGTIINATQWLSSL 397 (591)
Q Consensus 343 i~~ak~al~~~l~~-L--~~~d~f~Ii~-F~~~~~~~~~~~~~---------------------~~~~~~~~a~~~i~~l 397 (591)
....-+.+.-+|+. | ..+.|+.+++ ++...+.+.+...+ .++..+.+..+.++.-
T Consensus 43 ~~kvl~di~VFLNAhlaf~~~NrVaVva~~s~~~~yLypss~s~~k~se~e~tr~sd~yrrfr~vde~~i~eiyrl~e~~ 122 (296)
T COG5242 43 RDKVLNDIVVFLNAHLAFSRNNRVAVVAGYSQGKTYLYPSSESALKASESENTRNSDMYRRFRNVDETDITEIYRLIEHP 122 (296)
T ss_pred HHHHHHHHHHHHHHHHhhccCCeEEEEEeccCceEEeccCcchhhhhhcccCccchhhhhhhcccchHHHHHHHHHHhCc
Confidence 44455555555542 2 3467888765 44445444443221 2222344444444432
Q ss_pred CCC-CCCchHHHHHHHHHhhhcCCCC---ccEEEEEec-CCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHH
Q 007718 398 VAG-GGTNILLPLKQAIKLLSDTSES---IPLIFLITD-GTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFL 472 (591)
Q Consensus 398 ~~~-GgT~l~~aL~~a~~~l~~~~~~---~~~IillTD-G~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL 472 (591)
... -.+++..|+..++....+.... ..+|+++|= |... ..+.+..+.-. =.+...+++|..+.|+.+ ..+|
T Consensus 123 ~k~sqr~~v~gams~glay~n~~~~e~slkSriliftlsG~d~-~~qYip~mnCi-F~Aqk~~ipI~v~~i~g~--s~fl 198 (296)
T COG5242 123 HKNSQRYDVGGAMSLGLAYCNHRDEETSLKSRILIFTLSGRDR-KDQYIPYMNCI-FAAQKFGIPISVFSIFGN--SKFL 198 (296)
T ss_pred ccccceeehhhhhhhhHHHHhhhcccccccceEEEEEecCchh-hhhhchhhhhe-eehhhcCCceEEEEecCc--cHHH
Confidence 222 4578888888888877654322 124444443 6321 11112222111 112234577888888764 6789
Q ss_pred HHHHHhCCCEEEEcCCCCchH
Q 007718 473 QILAQIGRGYYDSAYDPGSVD 493 (591)
Q Consensus 473 ~~LA~~~~G~~~~v~~~~~l~ 493 (591)
.+-+.++||.|..+.+.+.+-
T Consensus 199 ~Q~~daTgG~Yl~ve~~eGll 219 (296)
T COG5242 199 LQCCDATGGDYLTVEDTEGLL 219 (296)
T ss_pred HHHhhccCCeeEeecCchhHH
Confidence 999999999999998876543
No 98
>PF00362 Integrin_beta: Integrin, beta chain; InterPro: IPR002369 Integrins are the major metazoan receptors for cell adhesion to extracellular matrix proteins and, in vertebrates, also play important roles in certain cell-cell adhesions, make transmembrane connections to the cytoskeleton and activate many intracellular signalling pathways [, ]. The integrin receptors are composed of alpha and beta subunit heterodimers. Each subunit crosses the membrane once, with most of the polypeptide residing in the extracellular space, and has two short cytoplasmic domains. Some members of this family have EGF repeats at the C terminus and also have a vWA domain inserted within the integrin domain at the N terminus. Most integrins recognise relatively short peptide motifs, and in general require an acidic amino acid to be present. Ligand specificity depends upon both the alpha and beta subunits []. There are at least 18 types of alpha and 8 types of beta subunits recognised in humans []. Each alpha subunit tends to associate only with one type of beta subunit, but there are exceptions to this rule []. Each association of alpha and beta subunits has its own binding specificity and signalling properties. Many integrins require activation on the cell surface before they can bind ligands. Integrins frequently intercommunicate, and binding at one integrin receptor activate or inhibit another. The structure of unliganded alphaV beta3 showed the molecule to be folded, with the head bent over towards the C termini of the legs which would normally be inserted into the membrane []. The head comprises a beta propeller domain at the end terminus of the alphaV subunit and an I/A domain inserted into a loop on the top of the hybrid domain in the beta subunit. The I/A domain consists of a Rossman fold with a core of beta parallel sheets surrounded by amphipathic alpha helices. Integrins are important therapeutic targets in conditions such as atherosclerosis, thrombosis, cancer and asthma []. At the N terminus of the beta subunit is a cysteine-containing domain reminiscent of that found in presenillins and semaphorins, which has hence been termed the PSI domain. C-terminal to the PSI domain is an A-domain, which has been predicted to adopt a Rossmann fold similar to that of the alpha subunit, but with additional loops between the second and third beta strands []. The murine gene Pactolus shares significant similarity with the beta subunit [], but lacks either one or both of the inserted loops. The C-terminal portion of the beta subunit extracellular domain contains an internally disulphide-bonded cysteine-rich region, while the intracellular tail contains putative sites of interaction with a variety of intracellular signalling and cytoskeletal proteins, such as focal adhesion kinase and alpha-actinin respectively []. Integrin cytoplasmic domains are normally less than 50 amino acids in length, with the beta-subunit sequences exhibiting greater homology to each other than the alpha-subunit sequences. This is consistent with current evidence that the beta subunit is the principal site for binding of cytoskeletal and signalling molecules, whereas the alpha subunit has a regulatory role. The first 20 amino acids of the beta-subunit cytoplasmic domain are also alpha helical, but the final 25 residues are disordered and, apart from a turn that follows a conserved NPxY motif, appear to lack defined structure, suggesting that this is adopted on effector binding. The two membrane-proximal helices mediate the link between the subunits via a series of hydrophobic and electrostatic contacts. This entry represents the N-terminal portion of the extracellular region of integrin beta subunits.; GO: 0005488 binding, 0007155 cell adhesion, 0007160 cell-matrix adhesion; PDB: 3VI4_B 3VI3_B 2VDQ_B 3IJE_B 1M1X_B 2VDR_B 3NIF_B 3NID_D 1TYE_F 2Q6W_F ....
Probab=91.12 E-value=0.64 Score=50.07 Aligned_cols=188 Identities=17% Similarity=0.178 Sum_probs=98.1
Q ss_pred eEEEEEecCCCCCCCccCceEEEEEeCCcCCCcchHHHHHH---HHHHHHHhcCCCCeEEEEEeCCceEe-ee-------
Q 007718 308 IFCLYLFPGKSQSRKVFRKDVVFLVDVSGSMQGVLLEQTKN---ALSASLSKLNPQDSFNIIAFNGETHL-FS------- 376 (591)
Q Consensus 308 ~f~~~~~P~~~~~~~~~~~~ivfviD~SgSM~g~~i~~ak~---al~~~l~~L~~~d~f~Ii~F~~~~~~-~~------- 376 (591)
.|.+.+.|.. -.|.|+.+|+|.|+||.. .++..|. .|..-++.+..+-|+++-+|-+.... |.
T Consensus 90 ~f~v~~~~a~-----~yPvDLYyLmDlS~Sm~d-dl~~l~~lg~~l~~~~~~it~~~~~GfGsfvdK~~~P~~~~~p~~l 163 (426)
T PF00362_consen 90 TFNVTVRPAE-----DYPVDLYYLMDLSYSMKD-DLENLKSLGQDLAEEMRNITSNFRLGFGSFVDKPVMPFVSTTPEKL 163 (426)
T ss_dssp EEEEEEEBSS-----S--EEEEEEEE-SGGGHH-HHHHHCCCCHHHHHHHHTT-SSEEEEEEEESSSSSTTTST-SSHCH
T ss_pred EEEEEEeecc-----ccceeEEEEeechhhhhh-hHHHHHHHHHHHHHHHHhcCccceEechhhcccccCCcccCChhhh
Confidence 4666666654 468999999999999975 5666654 34445666777889999999776421 10
Q ss_pred --cC---------------cccCCHHHHHHHHHHHhcCCCCCCCch----HHHHHHHH---HhhhcCCCCccEEEEEecC
Q 007718 377 --SS---------------MKLASQGTIINATQWLSSLVAGGGTNI----LLPLKQAI---KLLSDTSESIPLIFLITDG 432 (591)
Q Consensus 377 --~~---------------~~~~~~~~~~~a~~~i~~l~~~GgT~l----~~aL~~a~---~~l~~~~~~~~~IillTDG 432 (591)
+. ....+ ++..+..+.+++..-.|+-+- ..||-.|. +.+.=+.+..+.+++.||+
T Consensus 164 ~~pc~~~~~~c~~~~~f~~~l~Lt-~~~~~F~~~v~~~~is~n~D~PEgg~dal~Qa~vC~~~igWr~~a~~llv~~TD~ 242 (426)
T PF00362_consen 164 KNPCPSKNPNCQPPFSFRHVLSLT-DDITEFNEEVNKQKISGNLDAPEGGLDALMQAAVCQEEIGWRNEARRLLVFSTDA 242 (426)
T ss_dssp HSTSCCTTS--B---SEEEEEEEE-S-HHHHHHHHHTS--B--SSSSBSHHHHHHHHHH-HHHHT--STSEEEEEEEESS
T ss_pred cCcccccCCCCCCCeeeEEeeccc-chHHHHHHhhhhccccCCCCCCccccchheeeeecccccCcccCceEEEEEEcCC
Confidence 00 00111 355566666665544333221 22332222 1111124567899999998
Q ss_pred CCCC--------------------hh-----------hHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHhCCC
Q 007718 433 TVGD--------------------ER-----------GICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRG 481 (591)
Q Consensus 433 ~~~~--------------------~~-----------~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~LA~~~~G 481 (591)
...- .. .....+.+.+.+. .-..||++.-. -....+.|+..=.|
T Consensus 243 ~fH~agDg~l~gi~~pnd~~Chl~~~~~y~~~~~~DYPSv~ql~~~l~e~--~i~~IFAVt~~---~~~~Y~~L~~~i~~ 317 (426)
T PF00362_consen 243 GFHFAGDGKLAGIVKPNDGKCHLDDNGMYTASTEQDYPSVGQLVRKLSEN--NINPIFAVTKD---VYSIYEELSNLIPG 317 (426)
T ss_dssp -B--TTGGGGGT--S---SS--BSTTSBBGGGGCS----HHHHHHHHHHT--TEEEEEEEEGG---GHHHHHHHHHHSTT
T ss_pred ccccccccccceeeecCCCceEECCCCcccccccccCCCHHHHHHHHHHc--CCEEEEEEchh---hhhHHHHHhhcCCC
Confidence 7420 00 1234455554432 12457776322 23355777777666
Q ss_pred EEEEc--CCCCchHHHHHHHHHHhccce
Q 007718 482 YYDSA--YDPGSVDYRIRRFFTAASSVF 507 (591)
Q Consensus 482 ~~~~v--~~~~~l~~~~~~~~~~~~~p~ 507 (591)
...-. .+.+.+-+.+...+.++.+.+
T Consensus 318 s~vg~L~~dSsNIv~LI~~aY~~i~s~V 345 (426)
T PF00362_consen 318 SSVGELSSDSSNIVQLIKEAYNKISSKV 345 (426)
T ss_dssp EEEEEESTTSHTHHHHHHHHHHHHCTEE
T ss_pred ceecccccCchhHHHHHHHHHHHHhheE
Confidence 65433 333457777777777776543
No 99
>KOG2487 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription; Replication, recombination and repair]
Probab=83.82 E-value=45 Score=33.27 Aligned_cols=165 Identities=16% Similarity=0.132 Sum_probs=88.5
Q ss_pred cCceEEEEEeCCcCCCc--------chHHHHHHHHHHHHHh-c--CCCCeEEEEEeCCceEe-eecCc------------
Q 007718 324 FRKDVVFLVDVSGSMQG--------VLLEQTKNALSASLSK-L--NPQDSFNIIAFNGETHL-FSSSM------------ 379 (591)
Q Consensus 324 ~~~~ivfviD~SgSM~g--------~~i~~ak~al~~~l~~-L--~~~d~f~Ii~F~~~~~~-~~~~~------------ 379 (591)
.|.-++++||.+.--+| ..+...-+++..+++. | ..+.++.+++..++... +.++.
T Consensus 22 ~~slL~vlId~~p~~Wg~~as~~~~~ti~kvl~aivVFlNAHL~~~~~NrvaViA~~~q~~~~lyp~st~~e~~n~~~~~ 101 (314)
T KOG2487|consen 22 NPSLLVVLIDANPCSWGMLASAENWETISKVLNAIVVFLNAHLAFSRNNRVAVIASHSQVDNYLYPSSTRCEDRNASELD 101 (314)
T ss_pred CceeEEEEEecCcchhhhhhhhcCceeHHHHHHHHHHHHHHHHhhccCCcEEEEEecccccceeccccccCCccCccccC
Confidence 45668899999873222 2455566666666643 3 34679999998655321 11100
Q ss_pred ------------ccCCHHHHHHHHHHHhc-CCCC-C-CCchHHHHHHHHHhhhcCC------CCccEEEEEecCCCCChh
Q 007718 380 ------------KLASQGTIINATQWLSS-LVAG-G-GTNILLPLKQAIKLLSDTS------ESIPLIFLITDGTVGDER 438 (591)
Q Consensus 380 ------------~~~~~~~~~~a~~~i~~-l~~~-G-gT~l~~aL~~a~~~l~~~~------~~~~~IillTDG~~~~~~ 438 (591)
...++.-+++..+.+.. ...+ | .|-+..|+..++....... .-..+|+++|=+.....+
T Consensus 102 ~t~~~~~~y~~~~~~d~tiv~ei~~lm~~~~~~~~~~rt~lagals~~L~yi~~~~ke~~~~~lkSRilV~t~t~d~~~q 181 (314)
T KOG2487|consen 102 PTRLVLFDYSEFRTVDDTIVEEIYRLMEHPDKYDVGDRTVLAGALSDALGYINRLHKEEASEKLKSRILVFTLTRDRALQ 181 (314)
T ss_pred chhhhcchhhhhcccchHHHHHHHHHHhCccccccccceeeccchhhccchHhhhhhhhhhhhhhceEEEEEechHHHhh
Confidence 01111112222222321 1111 2 4556666666655443211 113467777776532111
Q ss_pred hHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHhCCCEEEEcCCCCch
Q 007718 439 GICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYYDSAYDPGSV 492 (591)
Q Consensus 439 ~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~LA~~~~G~~~~v~~~~~l 492 (591)
....+.- +=.+...+++|-++.+|++ ..+|++-+..+||.|..+...+.+
T Consensus 182 -yi~~MNc-iFaAqKq~I~Idv~~l~~~--s~~LqQa~D~TGG~YL~v~~~~gL 231 (314)
T KOG2487|consen 182 -YIPYMNC-IFAAQKQNIPIDVVSLGGD--SGFLQQACDITGGDYLHVEKPDGL 231 (314)
T ss_pred -hhhHHHH-HHHHHhcCceeEEEEecCC--chHHHHHHhhcCCeeEecCCcchH
Confidence 1111111 1111234588888888875 679999999999999998877644
No 100
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=80.91 E-value=18 Score=45.19 Aligned_cols=120 Identities=19% Similarity=0.193 Sum_probs=73.4
Q ss_pred ceEEEEEeCCcCCCcch-HHHHHHHHHH---HHHhcCCCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCCCC-
Q 007718 326 KDVVFLVDVSGSMQGVL-LEQTKNALSA---SLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAG- 400 (591)
Q Consensus 326 ~~ivfviD~SgSM~g~~-i~~ak~al~~---~l~~L~~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~~~- 400 (591)
-.+++-+|-|.||..++ -..|-+.+.. .|..|.-+ .++|+.||...+.+.+.-.+.+.+.-.++..|. .-.
T Consensus 4393 yqvmisiddsksmses~~~~la~etl~lvtkals~le~g-~iav~kfge~~~~lh~fdkqfs~esg~~~f~~f---~feq 4468 (4600)
T COG5271 4393 YQVMISIDDSKSMSESGSTVLALETLALVTKALSLLEVG-QIAVMKFGEQPELLHPFDKQFSSESGVQMFSHF---TFEQ 4468 (4600)
T ss_pred eEEEEEecccccccccCceeeehHHHHHHHHHHHHHhhc-cEEEEecCCChhhhCchhhhhcchHHHHHHHhh---chhc
Confidence 36788999999998532 2223333333 34445444 889999999988766655555555554454443 333
Q ss_pred CCCchHHHHHHHHHhhhcC-----CCCccEEEEEecCCCCChhhHHHHHHHHHh
Q 007718 401 GGTNILLPLKQAIKLLSDT-----SESIPLIFLITDGTVGDERGICNEIKSYLT 449 (591)
Q Consensus 401 GgT~l~~aL~~a~~~l~~~-----~~~~~~IillTDG~~~~~~~i~~~v~~~~~ 449 (591)
..||..+-..+.+..+... .+....=|+++||.-.+.+.+...++++..
T Consensus 4469 s~tnv~~l~~~s~k~f~~a~t~~h~d~~qleiiisdgicedhdsi~kllrra~e 4522 (4600)
T COG5271 4469 SNTNVLALADASMKCFNYANTASHHDIRQLEIIISDGICEDHDSIRKLLRRAQE 4522 (4600)
T ss_pred ccccHHHHHHHHHHHHHHhhhhcccchheeEEEeecCcccchHHHHHHHHHhhh
Confidence 6777654443334333221 122334589999998888888777776643
No 101
>KOG1226 consensus Integrin beta subunit (N-terminal portion of extracellular region) [Signal transduction mechanisms; Extracellular structures]
Probab=79.99 E-value=6.4 Score=44.52 Aligned_cols=61 Identities=28% Similarity=0.351 Sum_probs=41.4
Q ss_pred cceEEEEEecCCCCCCCccCceEEEEEeCCcCCCcchHHHHH---HHHHHHHHhcCCCCeEEEEEeCCce
Q 007718 306 RQIFCLYLFPGKSQSRKVFRKDVVFLVDVSGSMQGVLLEQTK---NALSASLSKLNPQDSFNIIAFNGET 372 (591)
Q Consensus 306 ~~~f~~~~~P~~~~~~~~~~~~ivfviD~SgSM~g~~i~~ak---~al~~~l~~L~~~d~f~Ii~F~~~~ 372 (591)
...|.+.+.+.. --|.|++.|+|.|-||.. .++..| ..|..-++.|..+-|+++-+|-+..
T Consensus 118 ~~~f~l~~r~a~-----~yPVDLYyLMDlS~SM~D-Dl~~l~~LG~~L~~~m~~lT~nfrlGFGSFVDK~ 181 (783)
T KOG1226|consen 118 EQTFQLKVRQAE-----DYPVDLYYLMDLSYSMKD-DLENLKSLGTDLAREMRKLTSNFRLGFGSFVDKT 181 (783)
T ss_pred ceeEEEEEeecc-----CCCeeEEEEeecchhhhh-hHHHHHHHHHHHHHHHHHHhccCCccccchhccc
Confidence 345666665543 358999999999999985 444444 4455556667667777777775553
No 102
>KOG2326 consensus DNA-binding subunit of a DNA-dependent protein kinase (Ku80 autoantigen) [Replication, recombination and repair]
Probab=73.40 E-value=68 Score=35.60 Aligned_cols=134 Identities=17% Similarity=0.145 Sum_probs=72.7
Q ss_pred ceEEEEEeCCcCCCc------chHHHHHHHHHHHHHh--c--CCCCeEEEEEeCCceEe--------ee--cCcccCCHH
Q 007718 326 KDVVFLVDVSGSMQG------VLLEQTKNALSASLSK--L--NPQDSFNIIAFNGETHL--------FS--SSMKLASQG 385 (591)
Q Consensus 326 ~~ivfviD~SgSM~g------~~i~~ak~al~~~l~~--L--~~~d~f~Ii~F~~~~~~--------~~--~~~~~~~~~ 385 (591)
...+|++|.+.+|.- +.+++++.++...+.+ + +..|-|+++.|+.+... +. ....+....
T Consensus 5 e~ttfilDvG~~Ms~~~~~~~S~fE~a~~y~~~~lsrK~fa~rktD~is~vlyncD~ten~legg~~fqnisvl~p~~tp 84 (669)
T KOG2326|consen 5 ESTTFILDVGPSMSKNNETGKSNFEKAMAYLEYTLSRKSFASRKTDWISCVLYNCDVTENSLEGGNVFQNISVLAPVTTP 84 (669)
T ss_pred cceEEEEecCccccccCCCccccHHHHHHHHHHHHHHHHhhccCCceEEEEEecCCCccCccccccccceeEEeecccch
Confidence 456778899999984 3689999998887743 2 35689999999877531 10 011111222
Q ss_pred HHHHHHHHHh-cCCCC-CCCchHHHHHHHHHhhhcC-----CCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeE
Q 007718 386 TIINATQWLS-SLVAG-GGTNILLPLKQAIKLLSDT-----SESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRI 458 (591)
Q Consensus 386 ~~~~a~~~i~-~l~~~-GgT~l~~aL~~a~~~l~~~-----~~~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri 458 (591)
........+. .++.+ --.++..||-....++.+. +-..+.|++.+++..+...... .+. .+. ...+.+
T Consensus 85 af~~l~k~~~~~~qqns~q~Df~gal~vs~dL~~qhe~~~k~~~kr~Il~~~~l~~dfsd~~~-ive-~l~---~~didL 159 (669)
T KOG2326|consen 85 AFIGLIKRLKQYCQQNSHQSDFEGALSVSQDLLVQHEDIKKQFQKRKILKQIVLFTDFSDDLF-IVE-DLT---DEDIDL 159 (669)
T ss_pred hhHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhccchhhceEEEEeecccccchhhHH-HHH-HHh---hcCcce
Confidence 2223333333 22222 2234556666555544322 2234566667777665444433 222 222 234677
Q ss_pred EEEEcC
Q 007718 459 CTFGVG 464 (591)
Q Consensus 459 ~t~GiG 464 (591)
-++|+.
T Consensus 160 ~~~gld 165 (669)
T KOG2326|consen 160 LTEGLD 165 (669)
T ss_pred eEeecc
Confidence 777764
No 103
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=72.80 E-value=29 Score=33.92 Aligned_cols=75 Identities=23% Similarity=0.204 Sum_probs=37.1
Q ss_pred HHHHHHHHhhhcCCCCccEEEEEecCCCCCh-hhHHHHHHHHHhcCCCCCCeEEEEEcCCCCC--------HHHHHHHHH
Q 007718 407 LPLKQAIKLLSDTSESIPLIFLITDGTVGDE-RGICNEIKSYLTNTRSISPRICTFGVGLYCN--------HYFLQILAQ 477 (591)
Q Consensus 407 ~aL~~a~~~l~~~~~~~~~IillTDG~~~~~-~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~--------~~lL~~LA~ 477 (591)
++|..+++...+..+..-.+=|+|||.+... ..+...++-. .+.+-..+.||+|.=|.++. ..+.+.+++
T Consensus 14 ~~l~~~~~~~k~~~~~lHl~GLlSdGGVHSh~~Hl~al~~~a-~~~gv~~V~vH~f~DGRDt~P~S~~~yl~~l~~~l~~ 92 (223)
T PF06415_consen 14 PVLLEAIEHAKKNGGRLHLMGLLSDGGVHSHIDHLFALIKLA-KKQGVKKVYVHAFTDGRDTPPKSALKYLEELEEKLAE 92 (223)
T ss_dssp HHHHHHHHHHCCTT--EEEEEEESS-SSS--HHHHHHHHHHH-HHTT-SEEEEEEEE-SSSS-TTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCeEEEEEEecCCCccccHHHHHHHHHHH-HHcCCCEEEEEEecCCCCCCcchHHHHHHHHHHHHHh
Confidence 4666666666554445556778888887543 3333333322 22222346677777776654 224445555
Q ss_pred hCCCE
Q 007718 478 IGRGY 482 (591)
Q Consensus 478 ~~~G~ 482 (591)
.+.|.
T Consensus 93 ~~~g~ 97 (223)
T PF06415_consen 93 IGIGR 97 (223)
T ss_dssp HTCTE
T ss_pred hCCce
Confidence 55543
No 104
>PF04597 Ribophorin_I: Ribophorin I; InterPro: IPR007676 Ribophorin I is an essential subunit of oligosaccharyltransferase (OST), which is also known as dolichyl-diphosphooligosaccharide--protein glycosyltransferase, (2.4.1.119 from EC). OST catalyses the transfer of an oligosaccharide from dolichol pyrophosphate to selected asparagine residues of nascent polypeptides as they are translocated into the lumen of the rough endoplasmic reticulum. Ribophorin I and OST48 are thought to be responsible for OST catalytic activity []. Both yeast and mammalian proteins are glycosylated but the sites are not conserved. Glycosylation may contribute towards general solubility but is unlikely to be involved in a specific biochemical function []. Most family members are predicted to have a transmembrane helix at the C terminus of this region.; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0006486 protein glycosylation, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=58.67 E-value=87 Score=34.02 Aligned_cols=83 Identities=11% Similarity=0.166 Sum_probs=52.3
Q ss_pred eEEEEEEEEEEecccCCCceeeEEEEeecCC--CeeEEEEEEEECCEEEEEEE-EehHhhhhhhhhccccCCccceecCc
Q 007718 99 TAFVAFNGSWRVHCIMAGRQCDCTIAVPLGE--RGSLLGVEVEIDGRSYQSKL-ISLDDAEYKENVGKSKGDGRYLKGQI 175 (591)
Q Consensus 99 ~a~v~~~q~f~n~~~~~~~~~e~~y~fPL~~--~a~V~~f~~~i~gk~i~~~v-~~k~~a~~~~~~~~~~~~~~ll~~~~ 175 (591)
.+++++..+..| .++.+ ...|.|.||. ...+..+++..+++...... +++.+.. .+.+ -+.
T Consensus 17 ~vk~~~~i~i~N---~g~~p-~~~y~~~l~~~~~~~ls~~~a~~~~~~~~~~~~~~~~~~~-------~~~~-----~~~ 80 (432)
T PF04597_consen 17 YVKETIEITIKN---IGDEP-VSEYYFALPNDEADHLSYVSAKDKDKKKKLKVSKEITEVN-------SGSE-----IKY 80 (432)
T ss_pred EEEEEEEEEEEE---CCCCC-ceEEEEEECchhhccEEEEEEEECCCcccccccccccccc-------CCCC-----cce
Confidence 567888888888 56666 4456555555 45788888887765443333 1111100 0000 123
Q ss_pred eEEEcC-CCCCCCEEEEEEEEEE
Q 007718 176 YTLRIP-QVDGGSTLSIKVNWSQ 197 (591)
Q Consensus 176 F~~~v~-~i~~g~~v~I~i~y~q 197 (591)
|++.+. +|.||+++.|+++|.-
T Consensus 81 ~~i~L~~pl~~~~~~~l~v~~~~ 103 (432)
T PF04597_consen 81 YEITLPKPLAPGEKVTLTVEYVL 103 (432)
T ss_pred EEEECCCCCCCCCEEEEEEEEEe
Confidence 888888 5999999999999974
No 105
>COG5047 SEC23 Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking and secretion]
Probab=58.44 E-value=29 Score=38.24 Aligned_cols=50 Identities=24% Similarity=0.360 Sum_probs=44.3
Q ss_pred ccCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcCCCCeEEEEEeCCceEe
Q 007718 323 VFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHL 374 (591)
Q Consensus 323 ~~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~~~d~f~Ii~F~~~~~~ 374 (591)
..|.-+.||+|.-- .++.+...|+++...+..|+++.-+++|+|++..+.
T Consensus 120 ~~ppvf~fvvD~~~--D~e~l~~LkdslivslsllppeaLvglItygt~i~v 169 (755)
T COG5047 120 ILPPVFFFVVDACC--DEEELTALKDSLIVSLSLLPPEALVGLITYGTSIQV 169 (755)
T ss_pred cCCceEEEEEEeec--CHHHHHHHHHHHHHHHhcCCccceeeEEEecceeEE
Confidence 46778999999876 678999999999999999999999999999988654
No 106
>PRK05434 phosphoglyceromutase; Provisional
Probab=47.45 E-value=1.1e+02 Score=33.85 Aligned_cols=62 Identities=16% Similarity=0.110 Sum_probs=35.8
Q ss_pred HHHHHHHHHhhhcCCCCccEEEEEecCCCCCh-hhHHHHHHHHHhcCCCCCCeEEEEEcCCCCC
Q 007718 406 LLPLKQAIKLLSDTSESIPLIFLITDGTVGDE-RGICNEIKSYLTNTRSISPRICTFGVGLYCN 468 (591)
Q Consensus 406 ~~aL~~a~~~l~~~~~~~~~IillTDG~~~~~-~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~ 468 (591)
.++|..+++...+..+..-.+=|+|||.+... ..+...++-. .+.+-..+.||+|.=|.++.
T Consensus 95 n~~~~~~~~~~~~~~~~lHl~GL~SdggVHsh~~hl~~l~~~a-~~~g~~~v~vH~~~DGRD~~ 157 (507)
T PRK05434 95 NPALLDAIDKAKKNGGALHLMGLLSDGGVHSHIDHLFALLELA-KEEGVKKVYVHAFLDGRDTP 157 (507)
T ss_pred CHHHHHHHHHHHhcCCeEEEEEeccCCCcccHHHHHHHHHHHH-HHcCCCEEEEEEecCCCCCC
Confidence 34555555555443445557778888888543 3444444333 33333457788887777654
No 107
>PF01882 DUF58: Protein of unknown function DUF58; InterPro: IPR002881 This domain is found in a family of prokaryotic proteins that have no known function. Proteins belonging to this family include hypothetical proteins from eubacteria and archaebacteria. Some of these proteins also contain the Von Willebrand factor, type A domain (see IPR002035 from INTERPRO).
Probab=45.55 E-value=27 Score=28.18 Aligned_cols=40 Identities=20% Similarity=0.186 Sum_probs=29.4
Q ss_pred CceEEEEEeCCcCCCc-----chHHHHHHHHHHHHHhc-CCCCeEE
Q 007718 325 RKDVVFLVDVSGSMQG-----VLLEQTKNALSASLSKL-NPQDSFN 364 (591)
Q Consensus 325 ~~~ivfviD~SgSM~g-----~~i~~ak~al~~~l~~L-~~~d~f~ 364 (591)
..++.+++|.+++|.. .+++.+..++..++..+ ..++.|+
T Consensus 40 ~~~~~i~ld~~~~~~~~~~~~~~~e~~l~~a~~l~~~~~~~g~~v~ 85 (86)
T PF01882_consen 40 SQPVWIVLDLSPSMYFGSNGRSKFERALSAAASLANQALRQGDPVG 85 (86)
T ss_pred CCcEEEEEECCCccccCcCCCCHHHHHHHHHHHHHHHHHhcCCccc
Confidence 4679999999999975 67777777777666544 4466554
No 108
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=40.20 E-value=40 Score=38.52 Aligned_cols=10 Identities=20% Similarity=0.354 Sum_probs=4.2
Q ss_pred CCCCCCCCCC
Q 007718 30 AVMPPGMTRQ 39 (591)
Q Consensus 30 ~~~~~~~~~~ 39 (591)
|+|+|+|..+
T Consensus 544 pPppPPlpgg 553 (1102)
T KOG1924|consen 544 PPPPPPLPGG 553 (1102)
T ss_pred CCCCCCCCCC
Confidence 3334444443
No 109
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.33 E-value=1.8e+02 Score=27.37 Aligned_cols=44 Identities=20% Similarity=0.381 Sum_probs=32.4
Q ss_pred ceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcCCCCeEEEEEeCCceE
Q 007718 326 KDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETH 373 (591)
Q Consensus 326 ~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~~~d~f~Ii~F~~~~~ 373 (591)
.-+|||+|.+.- .++..+|+-+..++..-. -....++.|++.-.
T Consensus 86 ~~lIfVvDS~Dr---~Ri~eak~eL~~~l~~~~-l~~~~llv~aNKqD 129 (181)
T KOG0070|consen 86 QGLIFVVDSSDR---ERIEEAKEELHRMLAEPE-LRNAPLLVFANKQD 129 (181)
T ss_pred cEEEEEEeCCcH---HHHHHHHHHHHHHHcCcc-cCCceEEEEechhh
Confidence 458999998876 488999998888886654 23556777776643
No 110
>TIGR01307 pgm_bpd_ind 2,3-bisphosphoglycerate-independent phosphoglycerate mutase. This protein is about double in length of, and devoid of homology to the form of phosphoglycerate mutase that uses 2,3-bisphosphoglycerate as a cofactor.
Probab=37.50 E-value=2.3e+02 Score=31.30 Aligned_cols=62 Identities=19% Similarity=0.139 Sum_probs=35.9
Q ss_pred HHHHHHHHHhhhcCCCCccEEEEEecCCCCCh-hhHHHHHHHHHhcCCCCCCeEEEEEcCCCCC
Q 007718 406 LLPLKQAIKLLSDTSESIPLIFLITDGTVGDE-RGICNEIKSYLTNTRSISPRICTFGVGLYCN 468 (591)
Q Consensus 406 ~~aL~~a~~~l~~~~~~~~~IillTDG~~~~~-~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~ 468 (591)
..+|..+++...+..+..-.+=|+|||.+... ..+...++-. .+.+-..+.||+|.=|.++.
T Consensus 91 n~~l~~~~~~~~~~~~~lHl~GL~SdGgVHsh~~hl~~l~~~a-~~~g~~~v~vH~~~DGRD~~ 153 (501)
T TIGR01307 91 NPALLGAIDRAKDNNGKLHLMGLVSDGGVHSHIDHLIALIELA-AERGIEKVVLHAFTDGRDTA 153 (501)
T ss_pred CHHHHHHHHHHHhcCCceEEEEeccCCCCcchHHHHHHHHHHH-HHcCCCeEEEEEecCCCCCC
Confidence 34455555554443445567788888888543 4444444433 33333457788887787654
No 111
>KOG2291 consensus Oligosaccharyltransferase, alpha subunit (ribophorin I) [Posttranslational modification, protein turnover, chaperones]
Probab=36.17 E-value=1.8e+02 Score=32.10 Aligned_cols=94 Identities=21% Similarity=0.249 Sum_probs=58.0
Q ss_pred EEEEEEEEeeeEEEEEEEEEEecccCCCc-eeeEEEEeecCCCeeEEEEEE-EECCEEEEEEEEehHhhhhhhhhccccC
Q 007718 89 VEMEVDCCLDTAFVAFNGSWRVHCIMAGR-QCDCTIAVPLGERGSLLGVEV-EIDGRSYQSKLISLDDAEYKENVGKSKG 166 (591)
Q Consensus 89 v~v~V~~~~~~a~v~~~q~f~n~~~~~~~-~~e~~y~fPL~~~a~V~~f~~-~i~gk~i~~~v~~k~~a~~~~~~~~~~~ 166 (591)
++=+|+-.-.++.|+.+..+.| .++. .-|-.|.||=+.++.+.-+.+ ..+|+.- +.++ .. .+....++
T Consensus 36 v~RTIDlsS~ivK~tt~l~i~N---~g~ePatey~~a~~~~~~~~la~ls~~~~~g~~~-~~l~-~s-----~~~~~~~~ 105 (602)
T KOG2291|consen 36 VERTIDLSSQIVKVTTELSIEN---IGSEPATEYLLAFEKELGASLAFLSVAFTEGKKK-TLLK-LS-----VNPPKKDG 105 (602)
T ss_pred ceEEEehhhhhhhheeEEEEEe---cCCCchheEEEeccCccccceeEEEEeeccCccc-cccc-cc-----cCCcccCC
Confidence 3333333333677888889998 4554 478999999999999999854 3455422 1111 00 00011111
Q ss_pred CccceecCceEEEcCC-CCCCCEEEEEEEEE
Q 007718 167 DGRYLKGQIYTLRIPQ-VDGGSTLSIKVNWS 196 (591)
Q Consensus 167 ~~~ll~~~~F~~~v~~-i~~g~~v~I~i~y~ 196 (591)
.+ ...|++.+.+ |.||+++++.|.+.
T Consensus 106 ~~----~~~y~v~lp~pl~pge~vTl~V~~~ 132 (602)
T KOG2291|consen 106 AS----ERVYTVTLPNPLSPGEKVTLIVEAV 132 (602)
T ss_pred Cc----cceEEEeCCCCCCCCceEEEEEEee
Confidence 11 1588888885 99999999988764
No 112
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=34.48 E-value=2.8e+02 Score=25.45 Aligned_cols=41 Identities=15% Similarity=0.217 Sum_probs=29.5
Q ss_pred HHHHHHhCCCEEEEcCCCCchHHHHHHHHHHhccceEEeEEE
Q 007718 472 LQILAQIGRGYYDSAYDPGSVDYRIRRFFTAASSVFLTNMTL 513 (591)
Q Consensus 472 L~~LA~~~~G~~~~v~~~~~l~~~~~~~~~~~~~p~~~~v~l 513 (591)
+..+|+.-|..+..+.+.+++++.+...+.. ..|.+-++.+
T Consensus 131 ~~~la~a~G~~~~~v~~~~el~~al~~a~~~-~~p~liev~i 171 (172)
T cd02004 131 YDLVAEAFGGKGELVTTPEELKPALKRALAS-GKPALINVII 171 (172)
T ss_pred HHHHHHHCCCeEEEECCHHHHHHHHHHHHHc-CCCEEEEEEc
Confidence 4678888888888888888887777776643 4566666543
No 113
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=30.90 E-value=93 Score=24.56 Aligned_cols=31 Identities=13% Similarity=0.363 Sum_probs=17.5
Q ss_pred CCCCCCCEEEEEEEEEEeeecccCeEEEEEe
Q 007718 181 PQVDGGSTLSIKVNWSQKLTYEEGQFCLSVP 211 (591)
Q Consensus 181 ~~i~~g~~v~I~i~y~q~L~~~~g~~~~~lp 211 (591)
..|+||+++.+.++-.-+-....|.|.+.+-
T Consensus 44 ~~l~pG~s~~~~~~V~vp~~a~~G~y~v~~~ 74 (78)
T PF10633_consen 44 PSLPPGESVTVTFTVTVPADAAPGTYTVTVT 74 (78)
T ss_dssp --B-TTSEEEEEEEEEE-TT--SEEEEEEEE
T ss_pred ccCCCCCEEEEEEEEECCCCCCCceEEEEEE
Confidence 3688898888877766555555677765443
No 114
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=30.29 E-value=54 Score=27.57 Aligned_cols=38 Identities=16% Similarity=0.471 Sum_probs=30.7
Q ss_pred ceecCceEEEcCCCCCCCEEEEEEEEEEeeecccCeEEEEEeeec
Q 007718 170 YLKGQIYTLRIPQVDGGSTLSIKVNWSQKLTYEEGQFCLSVPFTF 214 (591)
Q Consensus 170 ll~~~~F~~~v~~i~~g~~v~I~i~y~q~L~~~~g~~~~~lp~~~ 214 (591)
+++|.+|.+++-+|.-++.+.|.+. ++|+|.+++|+.+
T Consensus 66 I~~pG~YeiNl~~Lld~~~iVval~-------EeG~Y~I~LP~~~ 103 (112)
T COG3364 66 ILRPGVYEINLESLLDRDEIVVALQ-------EEGRYFIHLPSLL 103 (112)
T ss_pred EecCceEEEehhhhccCCceEEEEc-------cCCeEEEEChhHh
Confidence 4589999999999999998777653 4799987777655
No 115
>PF08496 Peptidase_S49_N: Peptidase family S49 N-terminal; InterPro: IPR013703 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found to the N terminus of bacterial signal peptidases that belong to the MEROPS peptidase family S49 (protease IV family, clan SK) (see also IPR002142 from INTERPRO) [, ]. ; GO: 0004252 serine-type endopeptidase activity, 0005886 plasma membrane
Probab=29.43 E-value=1e+02 Score=28.38 Aligned_cols=42 Identities=26% Similarity=0.430 Sum_probs=36.6
Q ss_pred CceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcCCCCeEEEE
Q 007718 325 RKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNII 366 (591)
Q Consensus 325 ~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~~~d~f~Ii 366 (591)
++.-+||+|-.|+|.....+..++-+..+|.-..++|.+=+-
T Consensus 96 ~~~r~~VldF~Gdi~A~~v~~LReeisail~~a~~~DeV~~r 137 (155)
T PF08496_consen 96 PKPRLFVLDFKGDIKASEVESLREEISAILSVATPEDEVLVR 137 (155)
T ss_pred CCCeEEEEecCCCccHHHHHHHHHHHHHHHHhCCCCCeEEEE
Confidence 455789999999999999999999999999999999886543
No 116
>PF00733 Asn_synthase: Asparagine synthase; InterPro: IPR001962 This domain is always found associated with (IPR000583 from INTERPRO). Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B (6.3.5.4 from EC) catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase [].; GO: 0004066 asparagine synthase (glutamine-hydrolyzing) activity, 0006529 asparagine biosynthetic process; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A 1Q15_D 1Q19_C 1CT9_C 3K32_F.
Probab=26.86 E-value=2.4e+02 Score=27.27 Aligned_cols=94 Identities=13% Similarity=0.054 Sum_probs=53.3
Q ss_pred hHHHHHHHHHhhhcCCCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCC--CHHHHHHHHHhCCCE
Q 007718 405 ILLPLKQAIKLLSDTSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYC--NHYFLQILAQIGRGY 482 (591)
Q Consensus 405 l~~aL~~a~~~l~~~~~~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~--~~~lL~~LA~~~~G~ 482 (591)
+.+.|+.|++... ....+..+.+|-|. |...+...+++ .....++.|++|++... +...-+.+|+.-+-.
T Consensus 2 ~r~~l~~av~~rl--~~~~~i~~~LSGGl--DSs~i~~~~~~----~~~~~~~~~t~~~~~~~~~e~~~a~~va~~~~~~ 73 (255)
T PF00733_consen 2 LRELLEEAVARRL--RSDKPIGILLSGGL--DSSAIAALAAR----QGGPPIKTFTIGFEDDDYDEREYARKVARHLGLE 73 (255)
T ss_dssp HHHHHHHHHHHHC--GCTSEEEEE--SSH--HHHHHHHHHHH----TCCSEEEEEEEECSSCC--HHHHHHHHHHHHT-E
T ss_pred HHHHHHHHHHHHH--hcCCCEEEECCCCh--hHHHHHHHHHH----hhCCceeEEEEEcCCCcchhHHHHHHHhcccccc
Confidence 4566777776532 24567889999988 33344444333 22345778888887766 567788899888877
Q ss_pred EEEcC-CCCchHHHHHHHHHHhccc
Q 007718 483 YDSAY-DPGSVDYRIRRFFTAASSV 506 (591)
Q Consensus 483 ~~~v~-~~~~l~~~~~~~~~~~~~p 506 (591)
...+. +.+++...+...+.....|
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~p 98 (255)
T PF00733_consen 74 HHEIELDPEDLLDNLEDIIWRLDGP 98 (255)
T ss_dssp EEEEEE-HHHHHHHHHHHHHHHT--
T ss_pred cceeeechhhHHHhHHHHHHHHhCC
Confidence 55433 3344444455555444444
No 117
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.54 E-value=1.1e+02 Score=27.67 Aligned_cols=29 Identities=21% Similarity=0.448 Sum_probs=24.9
Q ss_pred CceEEEEEeCCcCCCcchHHHHHHHHHHHHHh
Q 007718 325 RKDVVFLVDVSGSMQGVLLEQTKNALSASLSK 356 (591)
Q Consensus 325 ~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~ 356 (591)
..-++||+|.+.| .+++.|++-+..+++.
T Consensus 85 tqglIFV~Dsa~~---dr~eeAr~ELh~ii~~ 113 (180)
T KOG0071|consen 85 TQGLIFVVDSADR---DRIEEARNELHRIIND 113 (180)
T ss_pred CceEEEEEeccch---hhHHHHHHHHHHHhCC
Confidence 3569999999988 6899999999888864
No 118
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=26.52 E-value=7.5e+02 Score=26.75 Aligned_cols=48 Identities=10% Similarity=0.096 Sum_probs=26.5
Q ss_pred CCCEEEEcCCCCchHHHHHHHHHHhccceEEeEEEEecCCCcceeeeC
Q 007718 479 GRGYYDSAYDPGSVDYRIRRFFTAASSVFLTNMTLETSKHLNSLELFP 526 (591)
Q Consensus 479 ~~G~~~~v~~~~~l~~~~~~~~~~~~~p~~~~v~l~~~~~~~~~~v~P 526 (591)
..|..+|-...+...+.++++....+--.+...-++.+.+...+-+.|
T Consensus 288 v~G~~hFrv~~~~g~~I~~~lr~~~sG~~vP~~v~d~pgg~gK~pl~p 335 (417)
T TIGR03820 288 SEGLSHFRTPVGKGIEIIESLIGHTSGFAVPTYVVDAPGGGGKIPVMP 335 (417)
T ss_pred CCCcccccCcHHHHHHHHHHHHHhCCCCCceEEEEecCCCCCCEEecc
Confidence 345544444445555666777776665555666666554443444444
No 119
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=25.96 E-value=1.9e+02 Score=23.40 Aligned_cols=35 Identities=23% Similarity=0.571 Sum_probs=15.8
Q ss_pred cCceEEEcC--CCCCCCEEEEEEEEEEeeecccCeEEE
Q 007718 173 GQIYTLRIP--QVDGGSTLSIKVNWSQKLTYEEGQFCL 208 (591)
Q Consensus 173 ~~~F~~~v~--~i~~g~~v~I~i~y~q~L~~~~g~~~~ 208 (591)
..+|+.-+. -|+||++...+.+|.+.-.. .|.|.+
T Consensus 44 ~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~-~G~Y~~ 80 (82)
T PF12690_consen 44 GKMFTQALQEETLEPGESLTYEETWDLKDLS-PGEYTL 80 (82)
T ss_dssp T-------EEEEE-TT-EEEEEEEESS-----SEEEEE
T ss_pred CchhhheeeEEEECCCCEEEEEEEECCCCCC-CceEEE
Confidence 345555555 38999988888887644221 577764
No 120
>PLN02538 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
Probab=25.36 E-value=6.1e+02 Score=28.48 Aligned_cols=59 Identities=17% Similarity=0.152 Sum_probs=33.1
Q ss_pred HHHHHHHHhhhcCCCCccEEEEEecCCCCCh-hhHHHHHHHHHhcCCCCCCeEEEEEcCCCCC
Q 007718 407 LPLKQAIKLLSDTSESIPLIFLITDGTVGDE-RGICNEIKSYLTNTRSISPRICTFGVGLYCN 468 (591)
Q Consensus 407 ~aL~~a~~~l~~~~~~~~~IillTDG~~~~~-~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~ 468 (591)
.+|..+++... .+..-.+=|+|||.+... ..+...++-. .+.+-..+.||+|.=|.++.
T Consensus 115 ~~l~~~~~~~~--~~~lHl~GL~SdGGVHSh~~Hl~al~~~a-~~~gv~~v~vH~f~DGRDt~ 174 (558)
T PLN02538 115 EGFKYIKEAFA--TGTLHLIGLLSDGGVHSRLDQLQLLLKGA-AERGAKRIRVHVLTDGRDVP 174 (558)
T ss_pred HHHHHHHHHhc--CCeeEEEEeccCCCcccHHHHHHHHHHHH-HHcCCCeEEEEEEcCCCCCC
Confidence 34444554441 344557778888888543 4444444433 33333457788887776654
No 121
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=24.75 E-value=3.7e+02 Score=24.70 Aligned_cols=28 Identities=29% Similarity=0.487 Sum_probs=23.1
Q ss_pred ceEEEEEeCCcCCCcchHHHHHHHHHHHHHh
Q 007718 326 KDVVFLVDVSGSMQGVLLEQTKNALSASLSK 356 (591)
Q Consensus 326 ~~ivfviD~SgSM~g~~i~~ak~al~~~l~~ 356 (591)
.-++||+|.|.. .++..+++.+..++..
T Consensus 83 ~~iIfVvDssd~---~~l~e~~~~L~~ll~~ 110 (175)
T PF00025_consen 83 DGIIFVVDSSDP---ERLQEAKEELKELLND 110 (175)
T ss_dssp SEEEEEEETTGG---GGHHHHHHHHHHHHTS
T ss_pred ceeEEEEecccc---eeecccccchhhhcch
Confidence 459999999964 4789999999888875
No 122
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=21.91 E-value=1.4e+02 Score=24.20 Aligned_cols=30 Identities=20% Similarity=0.624 Sum_probs=20.6
Q ss_pred EEcCCCCCCCEEEEEEEEEEeeecccCeEEEEE
Q 007718 178 LRIPQVDGGSTLSIKVNWSQKLTYEEGQFCLSV 210 (591)
Q Consensus 178 ~~v~~i~~g~~v~I~i~y~q~L~~~~g~~~~~l 210 (591)
..|+.|+||++..+.++|.-. ..|.|.+.+
T Consensus 52 ~~i~~L~~g~~~~v~~~~~~~---~~G~~~i~~ 81 (101)
T PF07705_consen 52 VTIPSLAPGESETVTFTWTPP---SPGSYTIRV 81 (101)
T ss_dssp EEESEB-TTEEEEEEEEEE-S---S-CEEEEEE
T ss_pred EEECCcCCCcEEEEEEEEEeC---CCCeEEEEE
Confidence 345789999999999999866 567776443
No 123
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=21.24 E-value=5.4e+02 Score=23.37 Aligned_cols=42 Identities=14% Similarity=0.040 Sum_probs=31.7
Q ss_pred HHHHHHhCCCEEEEcCCCCchHHHHHHHHHHhccceEEeEEEE
Q 007718 472 LQILAQIGRGYYDSAYDPGSVDYRIRRFFTAASSVFLTNMTLE 514 (591)
Q Consensus 472 L~~LA~~~~G~~~~v~~~~~l~~~~~~~~~~~~~p~~~~v~l~ 514 (591)
+..+|+.-|..+..+.+.+++++.+.+.+. ...|.+-++.++
T Consensus 114 ~~~lA~a~G~~~~~v~~~~el~~al~~a~~-~~gp~vi~v~i~ 155 (157)
T cd02001 114 LEAWAAACGYLVLSAPLLGGLGSEFAGLLA-TTGPTLLHAPIA 155 (157)
T ss_pred HHHHHHHCCCceEEcCCHHHHHHHHHHHHh-CCCCEEEEEEec
Confidence 678888888888888888888888877765 245776666553
No 124
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=20.93 E-value=66 Score=22.65 Aligned_cols=14 Identities=29% Similarity=0.482 Sum_probs=12.5
Q ss_pred CCCCCCEEEEEEEE
Q 007718 182 QVDGGSTLSIKVNW 195 (591)
Q Consensus 182 ~i~~g~~v~I~i~y 195 (591)
+|+||++..|+++|
T Consensus 32 ~i~PGes~~i~v~y 45 (45)
T PF07610_consen 32 PIAPGESGKIKVTY 45 (45)
T ss_pred eECCCCEEEEEEEC
Confidence 58999999999987
Done!