Query 007719
Match_columns 591
No_of_seqs 343 out of 2166
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 08:47:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007719.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007719hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fx5_A VON willebrand factor t 99.9 4E-24 1.4E-28 230.5 24.9 190 323-516 75-270 (464)
2 1ijb_A VON willebrand factor; 99.9 1E-20 3.4E-25 182.1 22.3 175 324-505 12-197 (202)
3 1q0p_A Complement factor B; VO 99.9 3.8E-21 1.3E-25 187.3 16.1 180 323-503 13-219 (223)
4 3ibs_A Conserved hypothetical 99.9 2.1E-20 7.1E-25 181.7 20.3 175 322-504 8-213 (218)
5 4hqo_A Sporozoite surface prot 99.8 2.4E-20 8.2E-25 187.3 16.3 176 324-504 17-207 (266)
6 3zqk_A VON willebrand factor; 99.8 6.6E-20 2.2E-24 175.9 18.1 167 322-504 18-194 (199)
7 1mf7_A Integrin alpha M; cell 99.8 2.3E-20 7.8E-25 178.2 11.5 175 324-505 4-191 (194)
8 4hqf_A Thrombospondin-related 99.8 2.2E-19 7.5E-24 181.7 19.1 179 324-506 20-212 (281)
9 1shu_X Anthrax toxin receptor 99.8 2.4E-19 8.2E-24 168.9 17.8 173 324-503 5-181 (182)
10 2b2x_A Integrin alpha-1; compu 99.8 1.1E-19 3.6E-24 177.6 15.8 173 324-505 21-213 (223)
11 1n3y_A Integrin alpha-X; alpha 99.8 5.1E-20 1.8E-24 176.1 11.5 176 323-505 7-195 (198)
12 1pt6_A Integrin alpha-1; cell 99.8 1.7E-19 5.9E-24 174.8 14.0 174 324-506 6-199 (213)
13 3n2n_F Anthrax toxin receptor 99.8 2.6E-19 9E-24 169.1 14.0 172 323-503 5-184 (185)
14 1atz_A VON willebrand factor; 99.8 1.1E-18 3.8E-23 165.7 18.3 163 324-495 4-176 (189)
15 1v7p_C Integrin alpha-2; snake 99.8 7.9E-19 2.7E-23 168.4 17.0 172 325-505 6-197 (200)
16 1mjn_A Integrin alpha-L; rossm 99.8 6.4E-20 2.2E-24 173.0 6.9 165 325-502 2-178 (179)
17 2xgg_A Microneme protein 2; A/ 99.8 4.6E-18 1.6E-22 160.0 16.5 145 325-474 17-170 (178)
18 2odp_A Complement C2; C3/C5 co 99.8 9E-19 3.1E-23 192.1 13.0 178 323-501 7-211 (509)
19 2x31_A Magnesium-chelatase 60 99.8 4.6E-21 1.6E-25 182.2 -5.3 173 323-503 3-186 (189)
20 3hrz_D Complement factor B; se 99.8 4.5E-18 1.5E-22 195.0 15.5 188 323-511 241-455 (741)
21 1rrk_A Complement factor B; BB 99.8 4.7E-18 1.6E-22 185.8 14.4 180 325-505 1-207 (497)
22 3k6s_A Integrin alpha-X; cell 99.6 2E-16 6.9E-21 186.3 7.3 176 323-505 128-316 (1095)
23 2x5n_A SPRPN10, 26S proteasome 99.6 1.2E-13 4.1E-18 131.1 19.1 155 326-490 3-174 (192)
24 4b4t_W RPN10, 26S proteasome r 99.6 4.8E-14 1.6E-18 139.4 16.1 146 327-481 5-163 (268)
25 2ww8_A RRGA, cell WALL surface 99.4 4.4E-13 1.5E-17 153.8 14.5 114 322-435 221-391 (893)
26 1yvr_A RO autoantigen, 60-kDa 99.3 9.4E-12 3.2E-16 136.8 12.8 134 323-466 366-504 (538)
27 1jey_B KU80; double-strand DNA 99.2 9.1E-11 3.1E-15 129.6 14.5 154 326-488 8-229 (565)
28 2nvo_A RO sixty-related protei 99.1 3.6E-10 1.2E-14 123.8 11.0 151 323-483 360-534 (535)
29 3rag_A Uncharacterized protein 99.0 4.6E-10 1.6E-14 108.3 5.8 92 324-418 133-227 (242)
30 1jey_A KU70; double-strand DNA 98.8 2.6E-08 8.8E-13 110.8 14.8 136 327-466 37-208 (609)
31 2nut_A Protein transport prote 98.2 8.9E-05 3E-09 84.3 22.5 164 323-490 130-382 (769)
32 3rag_A Uncharacterized protein 98.2 5E-06 1.7E-10 80.2 9.6 78 421-503 8-90 (242)
33 1pcx_A Protein transport prote 98.2 4.5E-05 1.5E-09 87.2 19.2 222 322-548 184-488 (810)
34 1m2o_A SEC23, protein transpor 98.0 0.00082 2.8E-08 76.4 25.9 164 323-490 119-376 (768)
35 2iue_A Pactolus I-domain; memb 98.0 2.1E-05 7.3E-10 74.7 10.0 107 324-436 2-118 (212)
36 1m2v_B SEC24, protein transpor 98.0 0.00034 1.1E-08 80.6 21.7 174 312-490 290-530 (926)
37 3fcs_B Integrin beta-3; beta p 97.9 0.00018 6E-09 80.4 16.7 188 307-507 98-355 (690)
38 3eh1_A Protein transport prote 97.7 0.0031 1E-07 71.3 23.3 164 322-490 157-378 (751)
39 3t3p_B Integrin beta-3; integr 97.6 0.0015 5E-08 69.0 16.2 189 307-507 98-355 (472)
40 3efo_B SEC24 related gene fami 97.5 0.0088 3E-07 67.8 23.3 224 322-548 174-475 (770)
41 3eh2_A Protein transport prote 97.5 0.011 3.6E-07 67.1 23.0 224 322-548 170-471 (766)
42 3k6s_B Integrin beta-2; cell r 97.4 0.00064 2.2E-08 75.7 11.7 188 307-507 91-345 (687)
43 3vi3_B Integrin beta-1; beta p 97.3 0.0086 2.9E-07 62.7 18.0 187 308-507 110-362 (454)
44 3v4v_B Integrin beta-7; cell a 96.8 0.0048 1.7E-07 65.3 10.7 188 307-507 119-374 (503)
45 4g2a_A Hypothetical protein; t 96.3 0.12 4.1E-06 51.4 16.3 111 78-202 10-150 (322)
46 1o98_A 2,3-bisphosphoglycerate 38.3 1.2E+02 0.0041 32.2 9.7 61 407-468 95-156 (511)
47 3isy_A Bsupi, intracellular pr 35.1 1.2E+02 0.0042 25.3 7.4 28 182-211 73-100 (120)
48 3igz_B Cofactor-independent ph 25.2 1.8E+02 0.006 31.2 8.2 62 406-468 107-169 (561)
No 1
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=99.92 E-value=4e-24 Score=230.50 Aligned_cols=190 Identities=19% Similarity=0.151 Sum_probs=166.7
Q ss_pred ccCceEEEEEeCCcCCC--cchHHHHHHHHHHHHHhcCCCCeEEEEEeCCceEeeecC---cccCCHHHHHHHHHHHhcC
Q 007719 323 VFRKDVVFLVDVSGSMQ--GVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSS---MKLASQGTIINATQWLSSL 397 (591)
Q Consensus 323 ~~~~~ivfviD~SgSM~--g~~i~~ak~al~~~l~~L~~~d~f~Ii~F~~~~~~~~~~---~~~~~~~~~~~a~~~i~~l 397 (591)
..+.+++||||+||||. +.+++.+|+++..+++.|+++++|+|+.|++++..+.+. +..++..+...+.++|+++
T Consensus 75 ~~~~dvv~VLD~SGSM~~~~~rl~~ak~a~~~ll~~L~~~drv~lV~Fs~~a~~~~p~t~~l~~~~~~~~~~l~~~I~~L 154 (464)
T 4fx5_A 75 GSENVEVIIIDCSGSMDYPRTKMMAAKEATKVAIDTLTDGAFFAVVAGTEGARVVYPTGGQLLRADYQSRAAAKEAVGRL 154 (464)
T ss_dssp -CCEEEEEEEECCGGGGTTTHHHHHHHHHHHHHHHHSCTTCEEEEEEESSSEEEEESSSSSCEECSHHHHHHHHHHHHTC
T ss_pred CCCceEEEEEEcCcccCCCCchHHHHHHHHHHHHHhCCCCCEEEEEEEcCceEEEecCCcccccCCHHHHHHHHHHHHcC
Confidence 46799999999999999 999999999999999999999999999999999887664 4566889999999999999
Q ss_pred CCCCCCchHHHHHHHHHhhhcCCCCccEEEEEecCCCCChh-hHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHH
Q 007719 398 VAGGGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVGDER-GICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILA 476 (591)
Q Consensus 398 ~~~GgT~l~~aL~~a~~~l~~~~~~~~~IillTDG~~~~~~-~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~LA 476 (591)
.++|||+++.||+.|++.+...++..+.|||||||.+++.. .......+.. ..+++||+||+|.+.|..+|+.||
T Consensus 155 ~~~GgT~l~~aL~~A~~~l~~~~~~~~~IILLTDG~~~~~~~~~l~~~~~a~----~~~i~i~tiGiG~~~d~~~L~~IA 230 (464)
T 4fx5_A 155 HANGGTAMGRWLAQAGRIFDTAPSAIKHAILLTDGKDESETPADLARAIQSS----IGNFTADCRGIGEDWEPKELRKIA 230 (464)
T ss_dssp CCCSCCCHHHHHHHHHHHHTTCTTSEEEEEEEESSCCTTSCHHHHHHHHHHH----TTTCEEEEEEESSSSCHHHHHHHH
T ss_pred CCCCCCcHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCCCCChHHHHHHHHHh----cCCCeEEEEEeCCccCHHHHHHHH
Confidence 99999999999999999998766667899999999987432 1222222221 245999999999999999999999
Q ss_pred HhCCCEEEEcCCCCchHHHHHHHHHHhccceEEeEEEEec
Q 007719 477 QIGRGYYDSAYDPGSVDYRIRRFFTAASSVFLTNMTLETS 516 (591)
Q Consensus 477 ~~~~G~~~~v~~~~~l~~~~~~~~~~~~~p~~~~v~l~~~ 516 (591)
+.++|.|+++.+.+++...+.+++..+.++.++|+++.+.
T Consensus 231 ~~tgG~~~~v~d~~~L~~~f~~i~~~~~s~~~~dv~l~l~ 270 (464)
T 4fx5_A 231 DALLGTVGIIRDPATLAEDFREMTAKSMGKEVADVALRLW 270 (464)
T ss_dssp HHTTCCEEEESSGGGHHHHHHHHHHHHHTCCEEEEEEEEE
T ss_pred HhCCCEEEEcCCHHHHHHHHHHHHHHhhchheeeeEEEEE
Confidence 9999999999999999999999999999999999998864
No 2
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C
Probab=99.87 E-value=1e-20 Score=182.07 Aligned_cols=175 Identities=11% Similarity=0.119 Sum_probs=136.9
Q ss_pred cCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcC---CCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCCCC
Q 007719 324 FRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLN---PQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAG 400 (591)
Q Consensus 324 ~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~---~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~~~ 400 (591)
.+.+++||||.||||.+.+++.+|+++..+++.|. +++||+|+.|++++....+.....+.+ .+.+.|+++...
T Consensus 12 ~~~divfvlD~SgSm~~~~~~~~k~~~~~~v~~l~~~~~~~rv~vv~fs~~~~~~~~l~~~~~~~---~~~~~i~~l~~~ 88 (202)
T 1ijb_A 12 RLLDLVFLLDGSSRLSEAEFEVLKAFVVDMMERLRVSQKWVRVAVVEYHDGSHAYIGLKDRKRPS---ELRRIASQVKYA 88 (202)
T ss_dssp SCEEEEEEEECBTTSCHHHHHHHHHHHHHHHHTBCBSTTSEEEEEEEESSSEEEEECTTCCCCHH---HHHHHHHTCCCC
T ss_pred CcccEEEEEECCCCCCHHHHHHHHHHHHHHHHhcccCCCceEEEEEEECCCceEEEecCCCCCHH---HHHHHHHhCcCC
Confidence 37999999999999999999999999999999997 578999999999988766543333444 445557777765
Q ss_pred -C-CCchHHHHHHHHHhh-hc--CCCCccEEEEEecCCCCCh--hhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHH
Q 007719 401 -G-GTNILLPLKQAIKLL-SD--TSESIPLIFLITDGTVGDE--RGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQ 473 (591)
Q Consensus 401 -G-gT~l~~aL~~a~~~l-~~--~~~~~~~IillTDG~~~~~--~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~ 473 (591)
| +|+++.||+.|.+.+ .. +++..+.|||+|||..++. ..+.+.++.... .+++||+||+|.+.|...|+
T Consensus 89 gg~~T~~~~aL~~a~~~~~~~~~r~~~~~~iillTDG~~~~~~~~~~~~~a~~l~~----~gi~i~~igvG~~~~~~~L~ 164 (202)
T 1ijb_A 89 GSQVASTSEVLKYTLFQIFSKIDRPEASRIALLLMASQEPQRMSRNFVRYVQGLKK----KKVIVIPVGIGPHANLKQIR 164 (202)
T ss_dssp CBSCCCHHHHHHHHHHHTSSSCSCTTSEEEEEEEECCCCCGGGCTTHHHHHHHHHH----TTEEEEEEEESTTSCHHHHH
T ss_pred CCCcCcHHHHHHHHHHHHhccCCCCCCCeEEEEEccCCCCccchHHHHHHHHHHHH----CCCEEEEEecCCcCCHHHHH
Confidence 3 499999999998654 32 2345679999999998753 234443333322 35999999999999999999
Q ss_pred HHHHhC-CCEEEEcCCCCchHHHHHHHHHHhcc
Q 007719 474 ILAQIG-RGYYDSAYDPGSVDYRIRRFFTAASS 505 (591)
Q Consensus 474 ~LA~~~-~G~~~~v~~~~~l~~~~~~~~~~~~~ 505 (591)
.||..+ +|.++.+.+.+++...+.++.+.++.
T Consensus 165 ~iA~~~~~~~~~~~~~~~~L~~~~~~i~~~iC~ 197 (202)
T 1ijb_A 165 LIEKQAPENKAFVLSSVDELEQQRDEIVSYLCD 197 (202)
T ss_dssp HHHHHCTTCCCEEESSGGGHHHHHHHHHHHHHH
T ss_pred HHhCCCCcccEEEeCCHHHHHHHHHHHHHHhhc
Confidence 999975 67888899999999888888887653
No 3
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=99.86 E-value=3.8e-21 Score=187.34 Aligned_cols=180 Identities=18% Similarity=0.226 Sum_probs=127.8
Q ss_pred ccCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhc---CCCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCCC
Q 007719 323 VFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKL---NPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVA 399 (591)
Q Consensus 323 ~~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L---~~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~~ 399 (591)
..+.+++||||+||||.+.+++.+|+++..+++.| +++++|+|+.|++.+....+...+. ..+...+.+.|+++.+
T Consensus 13 ~~~~div~vlD~SgSM~~~~~~~~k~~~~~~i~~l~~~~~~~~v~lv~f~~~~~~~~~~~~~~-~~~~~~~~~~i~~l~~ 91 (223)
T 1q0p_A 13 SGSMNIYLVLDGSDSIGASNFTGAKKSLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVSEAD-SSNADWVTKQLNEINY 91 (223)
T ss_dssp --CEEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHTTTCCCEEEEEEESSSEEEEECTTSGG-GGCHHHHHHHHHTCCT
T ss_pred CCceeEEEEEeCCCCCchHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCccceeeccccCC-CCCHHHHHHHHHhccc
Confidence 35789999999999999999999999999998765 4578999999999988765432222 2234455566666664
Q ss_pred -----CCCCchHHHHHHHHHhhhcCC--------CCccEEEEEecCCCC---ChhhHHHHHHHHH------hcCCCCCCe
Q 007719 400 -----GGGTNILLPLKQAIKLLSDTS--------ESIPLIFLITDGTVG---DERGICNEIKSYL------TNTRSISPR 457 (591)
Q Consensus 400 -----~GgT~l~~aL~~a~~~l~~~~--------~~~~~IillTDG~~~---~~~~i~~~v~~~~------~~~~~~~~r 457 (591)
+|+|++..||+.|.+.+.... +..+.|||+|||..+ +.....+.+++.. ......+++
T Consensus 92 ~~~~~~g~T~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 171 (223)
T 1q0p_A 92 EDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYLD 171 (223)
T ss_dssp TSCSCTTCCCHHHHHHHHHHHHCCTTSSCCTTGGGCEEEEEEEECSCCCSSSCTHHHHHHHHHHTTCSCBTTBCCGGGEE
T ss_pred ccccCCCCccHHHHHHHHHHHhhccccccccccccCCeEEEEECCCCCCCCCChHHHHHHHHHHHhhhhhhhhcccCCcE
Confidence 699999999999999887432 355689999999987 3444455555442 223345689
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC--EEEEcCCCCchHHHHHHHHHHh
Q 007719 458 ICTFGVGLYCNHYFLQILAQIGRG--YYDSAYDPGSVDYRIRRFFTAA 503 (591)
Q Consensus 458 i~t~GiG~~~~~~lL~~LA~~~~G--~~~~v~~~~~l~~~~~~~~~~~ 503 (591)
||+||+|...+...|+.||..++| .++.+.+.+++...+.+++++.
T Consensus 172 i~~igvG~~~~~~~L~~iA~~~~G~~~~~~~~~~~~L~~~~~~i~~~s 219 (223)
T 1q0p_A 172 VYVFGVGPLVNQVNINALASKKDNEQHVFKVKDMENLEDVFYQMIDES 219 (223)
T ss_dssp EEEEECSSCCCHHHHHHHSCCCTTCCCEEETTC---------------
T ss_pred EEEEEecCcCCHHHHHHHhcCCCCCceEEEcCCHHHHHHHHHHHhccc
Confidence 999999999999999999999999 8999999888988877777653
No 4
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=99.85 E-value=2.1e-20 Score=181.66 Aligned_cols=175 Identities=22% Similarity=0.276 Sum_probs=135.7
Q ss_pred CccCceEEEEEeCCcCCCcc-----hHHHHHHHHHHHHHhcCCCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhc
Q 007719 322 KVFRKDVVFLVDVSGSMQGV-----LLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSS 396 (591)
Q Consensus 322 ~~~~~~ivfviD~SgSM~g~-----~i~~ak~al~~~l~~L~~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~ 396 (591)
+..+.+++||||+||||.+. +++.+|+++..++..++ +++|+|+.|++++..+.+.. .+.+.+..+++.+..
T Consensus 8 ~~~~~~iv~vlD~SgSM~~~d~~~~r~~~ak~~~~~~~~~~~-~~~v~lv~F~~~~~~~~~~~--~~~~~~~~~l~~l~~ 84 (218)
T 3ibs_A 8 KRKGVEVIIALDISNSMLAQDVQPSRLEKAKRLISRLVDELD-NDKVGMIVFAGDAFTQLPIT--SDYISAKMFLESISP 84 (218)
T ss_dssp --CCCEEEEEEECSGGGGCCSSSSCHHHHHHHHHHHHHHTCS-SCEEEEEEESSSEEEEEEEE--SCHHHHHHHHHTCCG
T ss_pred ccCCCcEEEEEECCcCcccccCCcCHHHHHHHHHHHHHHhCC-CCeEEEEEECCCceEeCCCC--CCHHHHHHHHHhcCc
Confidence 35688999999999999975 89999999999999997 89999999999988776532 345555555444432
Q ss_pred -CCCCCCCchHHHHHHHHHhhhcCCCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCC----------
Q 007719 397 -LVAGGGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGL---------- 465 (591)
Q Consensus 397 -l~~~GgT~l~~aL~~a~~~l~~~~~~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~---------- 465 (591)
....|+|++..||+.|.+.+...+...+.|||+|||..+.. ...+.++.. . ..+++||+||+|.
T Consensus 85 ~~~~~g~T~l~~al~~a~~~l~~~~~~~~~ivllTDG~~~~~-~~~~~~~~~-~---~~~i~v~~igig~~~~~~~~~~g 159 (218)
T 3ibs_A 85 SLISKQGTAIGEAINLATRSFTPQEGVGRAIIVITDGENHEG-GAVEAAKAA-A---EKGIQVSVLGVGMPEGAPIPVEG 159 (218)
T ss_dssp GGCCSCSCCHHHHHHHHHTTSCSCSSCCEEEEEEECCTTCCS-CHHHHHHHH-H---TTTEEEEEEEESCTTCEECBCTT
T ss_pred ccCCCCCCcHHHHHHHHHHHHhhCCCCCcEEEEEcCCCCCCC-cHHHHHHHH-H---hcCCEEEEEEecCCCCCcccccC
Confidence 22369999999999999988765567789999999998765 333333332 2 2469999999997
Q ss_pred ---------------CCCHHHHHHHHHhCCCEEEEcCCCCchHHHHHHHHHHhc
Q 007719 466 ---------------YCNHYFLQILAQIGRGYYDSAYDPGSVDYRIRRFFTAAS 504 (591)
Q Consensus 466 ---------------~~~~~lL~~LA~~~~G~~~~v~~~~~l~~~~~~~~~~~~ 504 (591)
..|..+|+.||+.++|.|+++.+..+....+.+.+.++.
T Consensus 160 ~~~~~~~~~g~~~~~~~~~~~L~~iA~~~gG~~~~~~~~~~~~~~~~~~i~~l~ 213 (218)
T 3ibs_A 160 TNDYRRDREGNVIVTRLNEGMCQEIAKDGKGIYVRVDNSNSAQKAISQEISKMA 213 (218)
T ss_dssp SSCBCBCTTSCBCEECCCHHHHHHHHHHTEEEEEEECSSSHHHHHHHHHHHHHH
T ss_pred CCceeEcCCCCEeEecCCHHHHHHHHHhcCCEEEECCCChHHHHHHHHHHHHhh
Confidence 678999999999999999999986666666666666554
No 5
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=99.84 E-value=2.4e-20 Score=187.28 Aligned_cols=176 Identities=20% Similarity=0.195 Sum_probs=136.3
Q ss_pred cCceEEEEEeCCcCCCcchH-HHHHHHHHHHHHhcC---CCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcC--
Q 007719 324 FRKDVVFLVDVSGSMQGVLL-EQTKNALSASLSKLN---PQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSL-- 397 (591)
Q Consensus 324 ~~~~ivfviD~SgSM~g~~i-~~ak~al~~~l~~L~---~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l-- 397 (591)
.+.|++||||.||||.+..+ +.+|+++..+++.|. ++++|+|+.|++.+..+.+... .+..+...+.+.|+++
T Consensus 17 ~~~DivfvlD~SgSM~~~~~~~~~k~~~~~lv~~l~~~~~~~rvglv~Fs~~~~~~~~l~~-~~~~~~~~~~~~i~~l~~ 95 (266)
T 4hqo_A 17 EQVDLYLLVDGSGSIGYPNWITKVIPMLNGLINSLSLSRDTINLYMNLFGSYTTELIRLGS-GQSIDKRQALSKVTELRK 95 (266)
T ss_dssp CCEEEEEEEECSTTTCHHHHHHTHHHHHHHHHHTCCBCTTSEEEEEEEESSSEEEEECTTS-HHHHCHHHHHHHHHHHHH
T ss_pred CceeEEEEEECCCCcChhHHHHHHHHHHHHHHHHcccCCCCcEEEEEEecCCcceEEecCC-CCccCHHHHHHHHHHhhh
Confidence 46899999999999998888 599999999999997 6899999999999987765322 2222345555666666
Q ss_pred --CCCCCCchHHHHHHHHHhhhcC---CCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHH
Q 007719 398 --VAGGGTNILLPLKQAIKLLSDT---SESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFL 472 (591)
Q Consensus 398 --~~~GgT~l~~aL~~a~~~l~~~---~~~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL 472 (591)
.++|+|++..||+.|.+++... ++..+.|||||||.+++...+.+.++.... .+++||+||+|.+.+..+|
T Consensus 96 ~~~~~G~T~~~~AL~~a~~~l~~~~~r~~~~~~iIllTDG~~~d~~~~~~~a~~l~~----~gi~i~~iGiG~~~~~~~L 171 (266)
T 4hqo_A 96 TYTPYGTTSMTAALDEVQKHLNDRVNREKAIQLVILMTDGVPNSKYRALEVANKLKQ----RNVRLAVIGIGQGINHQFN 171 (266)
T ss_dssp HCCCCSCCCHHHHHHHHHHHHHTTCSCTTSEEEEEEEECSCCSCHHHHHHHHHHHHH----TTCEEEEEECSSSCCHHHH
T ss_pred ccCCCCCCCHHHHHHHHHHHHhhccccCCCCeEEEEEccCCCCCchHHHHHHHHHHH----CCCEEEEEecCcccCHHHH
Confidence 5789999999999999888653 345679999999999876666555554432 3599999999999999999
Q ss_pred HHHHHhC--C--CEEEEcCCCCchHHHHHHHHHHhc
Q 007719 473 QILAQIG--R--GYYDSAYDPGSVDYRIRRFFTAAS 504 (591)
Q Consensus 473 ~~LA~~~--~--G~~~~v~~~~~l~~~~~~~~~~~~ 504 (591)
+.||..+ + +.++++.+.+++.+.+.++.+++.
T Consensus 172 ~~iA~~~~~~g~~~~~~~~d~~~L~~i~~~l~~~iC 207 (266)
T 4hqo_A 172 RLIAGCRPREPNCKFYSYADWNEAVALIKPFIAKVC 207 (266)
T ss_dssp HHHHTCCTTCSSCTTEECSCHHHHHHHHHHHHCCCE
T ss_pred HHhhCCCCCCCCCCeEEecCHHHHHHHHHHHHhhhc
Confidence 9999875 2 367777777666655555555444
No 6
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A*
Probab=99.84 E-value=6.6e-20 Score=175.92 Aligned_cols=167 Identities=14% Similarity=0.135 Sum_probs=132.6
Q ss_pred CccCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhc---CCCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCC
Q 007719 322 KVFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKL---NPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLV 398 (591)
Q Consensus 322 ~~~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L---~~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~ 398 (591)
...+.|++||||.||||.+.+++.+|+++..+++.| ++++||+|+.|++++....+.....+.+ .+.+.|+++.
T Consensus 18 ~~~~~DivfvlD~S~Sm~~~~~~~~k~~~~~~~~~l~~~~~~~rv~vv~fs~~~~~~~~l~~~~~~~---~~~~~i~~l~ 94 (199)
T 3zqk_A 18 NSMVLDVAFVLEGSDKIGEADFNRSKEFMEEVIQRMDVGQDSIHVTVLQYSYMVTVEYPFSEAQSKG---DILQRLREIR 94 (199)
T ss_dssp -CCCCEEEEEEECCTTTCHHHHHHHHHHHHHHHHHSCBSTTSBEEEEEEESSSEEEEECTTSCCCHH---HHHHHHHHCC
T ss_pred CCCCcCEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEEECCcccEEEecCCcCCHH---HHHHHHHhCc
Confidence 356899999999999999999999999999999999 4789999999999998877654333444 4455566677
Q ss_pred CC-C-CCchHHHHHHHHHhhhc-----CCCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHH
Q 007719 399 AG-G-GTNILLPLKQAIKLLSD-----TSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYF 471 (591)
Q Consensus 399 ~~-G-gT~l~~aL~~a~~~l~~-----~~~~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~l 471 (591)
.. | +|+++.||+.|.+.+.. +++..+.|||+|||...+.-. + ...+++||+||+|.+.|..+
T Consensus 95 ~~gg~~T~~~~aL~~a~~~l~~~~~g~r~~~~~~iillTDG~~~d~v~------~-----~~~~v~v~~iGiG~~~~~~~ 163 (199)
T 3zqk_A 95 YQGGNRTNTGLALRYLSDHSFLVSQGDREQAPNLVYMVTGNPASDEIK------R-----LPGDIQVVPIGVGPNANVQE 163 (199)
T ss_dssp CCCCSCCCHHHHHHHCCCCCTCGGGTCCTTSCEEEEEEECSCCSSCCC------C-----CCTTEEEEEEEESTTCCHHH
T ss_pred CCCCCcChHHHHHHHHHHHhhCcccCCCCCCCeEEEEEeCCCCchHHH------H-----HhCCCEEEEEEcCCCCCHHH
Confidence 65 4 59999999999885422 134457999999999765321 0 02469999999999999999
Q ss_pred HHHHHHhCCCEEEEcCCCCchHHHHHHHHHHhc
Q 007719 472 LQILAQIGRGYYDSAYDPGSVDYRIRRFFTAAS 504 (591)
Q Consensus 472 L~~LA~~~~G~~~~v~~~~~l~~~~~~~~~~~~ 504 (591)
|+.||. +++ ++++.+.+++...+.+++.+++
T Consensus 164 L~~iA~-~~~-~~~~~~~~~L~~~~~~l~~~~c 194 (199)
T 3zqk_A 164 LERIGW-PNA-PILIQDFETLPREAPDLVLQRC 194 (199)
T ss_dssp HHHHHT-TSC-CEEESCTTTHHHHHHHHHHHHH
T ss_pred HHHHhC-CCc-eEEeCCHHHHHHHHHHHHHhhc
Confidence 999998 444 4588999999999999888775
No 7
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G
Probab=99.82 E-value=2.3e-20 Score=178.17 Aligned_cols=175 Identities=17% Similarity=0.173 Sum_probs=135.4
Q ss_pred cCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcC-CCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCCC-CC
Q 007719 324 FRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLN-PQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVA-GG 401 (591)
Q Consensus 324 ~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~-~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~~-~G 401 (591)
.+.+++||||.||||.+.+++.+|+++..+++.|. ++++|+|+.|++++....+... ..+...+.+.|+++.. +|
T Consensus 4 ~~~div~vlD~SgSm~~~~~~~~k~~~~~~~~~l~~~~~~v~vv~f~~~~~~~~~l~~---~~~~~~~~~~i~~l~~~~g 80 (194)
T 1mf7_A 4 EDSDIAFLIDGSGSIIPHDFRRMKEFVSTVMEQLKKSKTLFSLMQYSEEFRIHFTFKE---FQNNPNPRSLVKPITQLLG 80 (194)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHCCTTEEEEEEEESSSEEEEECHHH---HHHSCCHHHHHTTCCCCCS
T ss_pred CCeeEEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEecCCceEEEecCC---cCCHHHHHHHHHhCcCCCC
Confidence 46899999999999999899999999999999995 5789999999999887654321 1233445666788875 69
Q ss_pred CCchHHHHHHHHHhhhc-----CCCCccEEEEEecCCCC-ChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCC----HHH
Q 007719 402 GTNILLPLKQAIKLLSD-----TSESIPLIFLITDGTVG-DERGICNEIKSYLTNTRSISPRICTFGVGLYCN----HYF 471 (591)
Q Consensus 402 gT~l~~aL~~a~~~l~~-----~~~~~~~IillTDG~~~-~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~----~~l 471 (591)
+|++..||+.|.+.+.. +++..+.|||+|||.++ +.....+.++.. . ..+++||+||+|...+ ...
T Consensus 81 ~T~~~~aL~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~d~~~~~~~~~~~-~---~~gi~v~~igvG~~~~~~~~~~~ 156 (194)
T 1mf7_A 81 RTHTATGIRKVVRELFNITNGARKNAFKILVVITDGEKFGDPLGYEDVIPEA-D---REGVIRYVIGVGDAFRSEKSRQE 156 (194)
T ss_dssp CBCHHHHHHHHHHTTTSGGGTCCTTSEEEEEEEESSCCBSCSSCGGGTHHHH-H---HTTEEEEEEEESGGGCSHHHHHH
T ss_pred CchHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCCchhhHHHHHHH-H---HCCCEEEEEEecccccccccHHH
Confidence 99999999999975432 13346789999999987 443222222222 1 1358999999999876 789
Q ss_pred HHHHHHhC-CCEEEEcCCCCchHHHHHHHHHHhcc
Q 007719 472 LQILAQIG-RGYYDSAYDPGSVDYRIRRFFTAASS 505 (591)
Q Consensus 472 L~~LA~~~-~G~~~~v~~~~~l~~~~~~~~~~~~~ 505 (591)
|+.||..+ +|.++.+.+.+++...+.++.++++.
T Consensus 157 L~~iA~~~~~~~~~~~~~~~~l~~~~~~i~~~ic~ 191 (194)
T 1mf7_A 157 LNTIASKPPRDHVFQVNNFEALKTIQNQLREKIFC 191 (194)
T ss_dssp HHHHSCSSHHHHEEEESSGGGGGGGHHHHHHHHHT
T ss_pred HHHHhCCCCcccEEEeCCHHHHHHHHHHHHHHHhh
Confidence 99999986 57888899999999888888877754
No 8
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=99.82 E-value=2.2e-19 Score=181.74 Aligned_cols=179 Identities=19% Similarity=0.162 Sum_probs=141.1
Q ss_pred cCceEEEEEeCCcCCCcchH-HHHHHHHHHHHHhcCC---CCeEEEEEeCCceEeeecCccc--CCHHHHHHHHHHHh-c
Q 007719 324 FRKDVVFLVDVSGSMQGVLL-EQTKNALSASLSKLNP---QDSFNIIAFNGETHLFSSSMKL--ASQGTIINATQWLS-S 396 (591)
Q Consensus 324 ~~~~ivfviD~SgSM~g~~i-~~ak~al~~~l~~L~~---~d~f~Ii~F~~~~~~~~~~~~~--~~~~~~~~a~~~i~-~ 396 (591)
.+.|++||||.||||.+..+ +.+|+++..+++.|.. +++|+|+.|++++....+.... .+.+.+..+++.+. .
T Consensus 20 ~~~div~vlD~SgSM~~~~~~~~~k~~~~~~v~~l~~~~~~~rvglv~Fs~~~~~~~~l~~~~~~~~~~l~~~i~~l~~~ 99 (281)
T 4hqf_A 20 DEVDLYLLMDGSGSIRRHNWVNHAVPLAMKLIQQLNLNDNAIHLYASVFSNNAREIIRLHSDASKNKEKALIIIKSLLST 99 (281)
T ss_dssp SCEEEEEEEECCCCSSTHHHHHHHHHHHHHHHTTCCCCTTSEEEEEEEEETTEEEEEEECSSCSSCHHHHHHHHHHHHHT
T ss_pred CceeEEEEEeCCCCcCHHHHHHHHHHHHHHHHHHhccCCCCcEEEEEEcCCCceEEEEccccCccCHHHHHHHHHHHhhc
Confidence 57899999999999998777 8999999999999986 7899999999999776553322 23555555555554 2
Q ss_pred CCCCCCCchHHHHHHHHHhhhcC---CCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHH
Q 007719 397 LVAGGGTNILLPLKQAIKLLSDT---SESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQ 473 (591)
Q Consensus 397 l~~~GgT~l~~aL~~a~~~l~~~---~~~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~ 473 (591)
...+|+|++..||+.|.+.+... ++..+.|||||||..++...+.+.++.... .+++||+||+|.+.+..+|+
T Consensus 100 ~~~~G~T~~~~aL~~a~~~l~~~~~r~~~~~~iillTDG~~~d~~~~~~~~~~l~~----~gv~i~~igiG~~~~~~~L~ 175 (281)
T 4hqf_A 100 NLPYGKTSLTDALLQVRKHLNDRINRENANQLVVILTDGIPDSIQDSLKESRKLSD----RGVKIAVFGIGQGINVAFNR 175 (281)
T ss_dssp TGGGCSCCHHHHHHHHHHHHHTSCCCTTCEEEEEEEESSCCSCHHHHHHHHHHHHH----TTCEEEEEEESSSCCHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhccCCCCCCEEEEEEecCCCCCcHHHHHHHHHHHH----CCCEEEEEeCCCccCHHHHH
Confidence 34579999999999998887653 235679999999999876555555554432 35999999999999999999
Q ss_pred HHHHhC--CC--EEEEcCCCCchHHHHHHHHHHhccc
Q 007719 474 ILAQIG--RG--YYDSAYDPGSVDYRIRRFFTAASSV 506 (591)
Q Consensus 474 ~LA~~~--~G--~~~~v~~~~~l~~~~~~~~~~~~~p 506 (591)
.||... +| .++.+.+.+++...+..+..++...
T Consensus 176 ~iA~~~~~~g~~~~~~~~~~~~L~~~~~~l~~~iC~~ 212 (281)
T 4hqf_A 176 FLVGCHPSDGKCNLYADSAWENVKNVIGPFMKAVCVE 212 (281)
T ss_dssp HHTTSCSSSSCCTTEEEECGGGHHHHHHHHHHHHHHH
T ss_pred hhhCCCCCCCCCceEEecchhhhhcccCCcccccCCC
Confidence 999874 44 7788889899988888888777654
No 9
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=99.82 E-value=2.4e-19 Score=168.94 Aligned_cols=173 Identities=17% Similarity=0.202 Sum_probs=130.2
Q ss_pred cCceEEEEEeCCcCCCcchHHHHHHHHHHHHHh-cCCCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCCCCCC
Q 007719 324 FRKDVVFLVDVSGSMQGVLLEQTKNALSASLSK-LNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAGGG 402 (591)
Q Consensus 324 ~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~-L~~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~~~Gg 402 (591)
.+.+++||+|+||||.+..+. .+++++.++.. +.++++|+|+.|+++.....+.. .+.+.+..+++.+..+.++|+
T Consensus 5 ~~~dvv~vlD~SgSM~~~~~~-~~~~~~~~~~~~~~~~~~v~lv~f~~~~~~~~~~~--~~~~~~~~~l~~l~~~~~~g~ 81 (182)
T 1shu_X 5 RAFDLYFVLDKSGSVANNWIE-IYNFVQQLAERFVSPEMRLSFIVFSSQATIILPLT--GDRGKISKGLEDLKRVSPVGE 81 (182)
T ss_dssp SCEEEEEEEECSGGGGGGHHH-HHHHHHHHHHHCCCTTEEEEEEEESSSEEEEEEEE--CCHHHHHHHHHHHHTCCCCSC
T ss_pred CceeEEEEEECCCCcccCHHH-HHHHHHHHHHHhcCCCceEEEEEeCCCceEEECCC--CCHHHHHHHHHhcccCCCCCC
Confidence 578999999999999986553 34445555444 45789999999999988766532 567788888888887778899
Q ss_pred CchHHHHHHHHHhhhcC--CCCccEEEEEecCCCCChhh-HHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHhC
Q 007719 403 TNILLPLKQAIKLLSDT--SESIPLIFLITDGTVGDERG-ICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIG 479 (591)
Q Consensus 403 T~l~~aL~~a~~~l~~~--~~~~~~IillTDG~~~~~~~-i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~LA~~~ 479 (591)
|++..||+.|.+.+... ++..+.|||+|||..++... ......+.+. ..+++||+||+| ..+...|+.||..+
T Consensus 82 T~~~~al~~a~~~l~~~~~~~~~~~iiliTDG~~~~~~~~~~~~~~~~~~---~~~i~i~~igvg-~~~~~~L~~ia~~~ 157 (182)
T 1shu_X 82 TYIHEGLKLANEQIQKAGGLKTSSIIIALTDGKLDGLVPSYAEKEAKISR---SLGASVYCVGVL-DFEQAQLERIADSK 157 (182)
T ss_dssp CCHHHHHHHHHHHHHHHTGGGSCEEEEEEECCCCCTTHHHHHHHHHHHHH---HTTCEEEEEECS-SCCHHHHHHHSSSG
T ss_pred chHHHHHHHHHHHHHhccCCCCCeEEEEECCCCcCCCCchhHHHHHHHHH---hCCCEEEEEeCC-cCCHHHHHHHhCCC
Confidence 99999999999988654 35668999999999875431 1122222222 235999999999 56899999999999
Q ss_pred CCEEEEcCCCCchHHHHHHHHHHh
Q 007719 480 RGYYDSAYDPGSVDYRIRRFFTAA 503 (591)
Q Consensus 480 ~G~~~~v~~~~~l~~~~~~~~~~~ 503 (591)
+|.|+...+.+++...+.++.+++
T Consensus 158 ~~~~~~~~~~~~L~~~~~~i~~~i 181 (182)
T 1shu_X 158 EQVFPVKGGFQALKGIINSILAQS 181 (182)
T ss_dssp GGEEESSSTTHHHHHHHHHHHHTB
T ss_pred CceEEccCCHHHHHHHHHHHHhcc
Confidence 887776557777877777666543
No 10
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=99.82 E-value=1.1e-19 Score=177.61 Aligned_cols=173 Identities=14% Similarity=0.091 Sum_probs=135.7
Q ss_pred cCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcC---CCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCCCC
Q 007719 324 FRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLN---PQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAG 400 (591)
Q Consensus 324 ~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~---~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~~~ 400 (591)
.+.+++||||.||||. .++.+|+++..+++.|. ++++|+|+.|++++....+... ..+...+.+.|+++...
T Consensus 21 ~~~div~vlD~SgSM~--~~~~~k~~~~~~~~~l~~~~~~~rv~lv~F~~~~~~~~~l~~---~~~~~~~~~~i~~l~~~ 95 (223)
T 2b2x_A 21 TQLDIVIVLDGSNSIY--PWESVIAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEFNLNK---YSSTEEVLVAANKIVQR 95 (223)
T ss_dssp -CEEEEEEEECSTTCC--CHHHHHHHHHHHHTTSCCSTTSCCEEEEEESSSEEEEECTTT---CCSHHHHHHHHTTCCCC
T ss_pred CcceEEEEEECCCChh--hHHHHHHHHHHHHHhcccCCCCeEEEEEEeCCCccEEEecCC---CCCHHHHHHHHHhhhcc
Confidence 4789999999999998 48999999999999885 6899999999999887765422 23445566677887765
Q ss_pred C--CCchHHHHHHHHHhh-h----cCCCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCC-----
Q 007719 401 G--GTNILLPLKQAIKLL-S----DTSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCN----- 468 (591)
Q Consensus 401 G--gT~l~~aL~~a~~~l-~----~~~~~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~----- 468 (591)
| +|++..||+.|.+.+ . ..++..+.|||+|||..++.....+.++.. . ..+++||+||+|...|
T Consensus 96 gG~~T~~~~aL~~a~~~l~~~~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~-~---~~gi~v~~igvG~~~~~~~~~ 171 (223)
T 2b2x_A 96 GGRQTMTALGIDTARKEAFTEARGARRGVKKVMVIVTDGESHDNYRLKQVIQDC-E---DENIQRFSIAILGHYNRGNLS 171 (223)
T ss_dssp CCSSCCHHHHHHHHHHTTSSGGGTCCTTSEEEEEEEESSCCTTGGGHHHHHHHH-H---TTTEEEEEEEECGGGC---CC
T ss_pred CCCCccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCCccHHHHHHHH-H---HCCCEEEEEEecCcccccccc
Confidence 4 499999999999873 3 124556799999999998765444433333 2 2469999999998766
Q ss_pred ----HHHHHHHHHh-CCCEEEEcCCCCchHHHHHHHHHHhcc
Q 007719 469 ----HYFLQILAQI-GRGYYDSAYDPGSVDYRIRRFFTAASS 505 (591)
Q Consensus 469 ----~~lL~~LA~~-~~G~~~~v~~~~~l~~~~~~~~~~~~~ 505 (591)
...|+.||.. ++|.|+.+.+.+++...+..+.++++.
T Consensus 172 ~~~~~~~L~~iA~~p~~g~~~~~~~~~~L~~i~~~i~~~ic~ 213 (223)
T 2b2x_A 172 TEKFVEEIKSIASEPTEKHFFNVSDELALVTIVKALGERIFA 213 (223)
T ss_dssp CHHHHHHHHTTSCSSGGGTEEEESSTTGGGGGHHHHHTTTC-
T ss_pred chhHHHHHHHHhCCCchhcEEEeCCHHHHHHHHHHHHHhhcC
Confidence 4789999998 889999999999999888877777654
No 11
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=99.81 E-value=5.1e-20 Score=176.09 Aligned_cols=176 Identities=19% Similarity=0.180 Sum_probs=135.6
Q ss_pred ccCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhc-CCCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCC-CC
Q 007719 323 VFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKL-NPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLV-AG 400 (591)
Q Consensus 323 ~~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L-~~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~-~~ 400 (591)
..+.+++||||+||||.+..++.++++++.+++.| +++++|+|+.|++.+....+.. +..+...+.+.|+.+. .+
T Consensus 7 ~~~~div~vlD~SgSM~~~~~~~~~~~~~~~~~~l~~~~~~v~lv~f~~~~~~~~~~~---~~~~~~~~~~~i~~l~~~~ 83 (198)
T 1n3y_A 7 RQEQDIVFLIDGSGSISSRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQTHFTFE---EFRRSSNPLSLLASVHQLQ 83 (198)
T ss_dssp -CCEEEEEEEECCTTSCHHHHHHHHHHHHHHHTTSCTTTEEEEEEEESSSEEEEECHH---HHHHCSSGGGGGTTCCCCC
T ss_pred CCCeeEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCccEEEecC---ccCCHHHHHHHHhcCcCCC
Confidence 35789999999999999888999999999999999 6899999999999987665431 1223334555677766 46
Q ss_pred CCCchHHHHHHHHHhh-hc----CCCCccEEEEEecCCCC-ChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCC----CHH
Q 007719 401 GGTNILLPLKQAIKLL-SD----TSESIPLIFLITDGTVG-DERGICNEIKSYLTNTRSISPRICTFGVGLYC----NHY 470 (591)
Q Consensus 401 GgT~l~~aL~~a~~~l-~~----~~~~~~~IillTDG~~~-~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~----~~~ 470 (591)
|+|++..||+.|.+.+ .. .++..+.|||+|||.++ +.....+.++.. . ..+++||+||+|... +..
T Consensus 84 g~T~~~~al~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~~~~~~~~~~~~~-~---~~gi~i~~igvG~~~~~~~~~~ 159 (198)
T 1n3y_A 84 GFTYTATAIQNVVHRLFHASYGARRDAAKILIVITDGKKEGDSLDYKDVIPMA-D---AAGIIRYAIGVGLAFQNRNSWK 159 (198)
T ss_dssp SCBCHHHHHHHHHTTTTSGGGTCCTTSEEEEEEEESSCCBSCSSCHHHHHHHH-H---HTTCEEEEEEESGGGGSSTTHH
T ss_pred CCchHHHHHHHHHHHHhCcccCCCCCCceEEEEECCCCCCCCcccHHHHHHHH-H---HCCCEEEEEEccccccccccHH
Confidence 9999999999999544 32 13456799999999987 433333333322 2 235899999999887 689
Q ss_pred HHHHHHHhCCCEE-EEcCCCCchHHHHHHHHHHhcc
Q 007719 471 FLQILAQIGRGYY-DSAYDPGSVDYRIRRFFTAASS 505 (591)
Q Consensus 471 lL~~LA~~~~G~~-~~v~~~~~l~~~~~~~~~~~~~ 505 (591)
.|+.||..++|.| +.+.+.+++...+.++.++++.
T Consensus 160 ~L~~iA~~~~g~~~~~~~~~~~l~~~~~~i~~~ic~ 195 (198)
T 1n3y_A 160 ELNDIASKPSQEHIFKVEDFDALKDIQNQLKEKIFA 195 (198)
T ss_dssp HHHHHSCSSSGGGEEEESSGGGGGGGHHHHHHHHHT
T ss_pred HHHHHHcCCCcccEEEeCCHHHHHHHHHHHHhheec
Confidence 9999999999986 7788888898888888877653
No 12
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=99.81 E-value=1.7e-19 Score=174.80 Aligned_cols=174 Identities=14% Similarity=0.097 Sum_probs=134.8
Q ss_pred cCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcC---CCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCCCC
Q 007719 324 FRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLN---PQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAG 400 (591)
Q Consensus 324 ~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~---~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~~~ 400 (591)
.+.+++||||.||||. .++.+|+++..+++.|. ++++|+|+.|++++....+... ..+...+.+.|+++.+.
T Consensus 6 ~~~div~vlD~SgSm~--~~~~~k~~~~~~~~~l~~~~~~~~v~lv~F~~~~~~~~~l~~---~~~~~~~~~~i~~l~~~ 80 (213)
T 1pt6_A 6 TQLDIVIVLDGSNSIY--PWDSVTAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEFNLNK---YSSTEEVLVAAKKIVQR 80 (213)
T ss_dssp -CEEEEEEEECCTTCC--CHHHHHHHHHHHHTTSCBSTTSBEEEEEEESSSEEEEECTTT---CSSHHHHHHHHHTCCCC
T ss_pred CCccEEEEEECCCChh--hHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCCccEEEeccc---cCCHHHHHHHHHhccCC
Confidence 3689999999999997 58999999999999885 6899999999999987766422 23445566667777765
Q ss_pred -C-CCchHHHHHHHHHhh-h----cCCCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCC-----
Q 007719 401 -G-GTNILLPLKQAIKLL-S----DTSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCN----- 468 (591)
Q Consensus 401 -G-gT~l~~aL~~a~~~l-~----~~~~~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~----- 468 (591)
| +|++..||+.|.+.+ . ..++..+.|||+|||..++.....+.++.. .+ .+++||+||+|...|
T Consensus 81 ~G~~T~~~~aL~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~~~~~~~~~~~~-~~---~gi~i~~igig~~~~~~~~~ 156 (213)
T 1pt6_A 81 GGRQTMTALGTDTARKEAFTEARGARRGVKKVMVIVTDGESHDNHRLKKVIQDC-ED---ENIQRFSIAILGSYNRGNLS 156 (213)
T ss_dssp CCSSCCHHHHHHHHHHTTTSGGGTCCTTCEEEEEEEESSCCSCSHHHHHHHHHH-HH---TTEEEEEEEECHHHHHTTCC
T ss_pred CCCcccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCCccHHHHHHHH-HH---CCCEEEEEEecccccccccc
Confidence 4 489999999999874 3 124567799999999998765443333332 22 358999999997644
Q ss_pred ----HHHHHHHHHh-CCCEEEEcCCCCchHHHHHHHHHHhccc
Q 007719 469 ----HYFLQILAQI-GRGYYDSAYDPGSVDYRIRRFFTAASSV 506 (591)
Q Consensus 469 ----~~lL~~LA~~-~~G~~~~v~~~~~l~~~~~~~~~~~~~p 506 (591)
...|+.||.. ++|.++.+.+.+++...+..+.++++..
T Consensus 157 ~~~~~~~L~~iA~~~~~g~~~~~~~~~~l~~i~~~l~~~i~~~ 199 (213)
T 1pt6_A 157 TEKFVEEIKSIASEPTEKHFFNVSDELALVTIVKTLGERIFAL 199 (213)
T ss_dssp CHHHHHHHHHHSCSSHHHHEEEESSGGGGGGGHHHHHHHHTC-
T ss_pred chhhHHHHHHHhCCCchhcEEEeCCHHHHHHHHHHHHHhheec
Confidence 4789999998 6899999999999998888888877644
No 13
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=99.80 E-value=2.6e-19 Score=169.14 Aligned_cols=172 Identities=17% Similarity=0.161 Sum_probs=131.0
Q ss_pred ccCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhc-CCCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCCCCC
Q 007719 323 VFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKL-NPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAGG 401 (591)
Q Consensus 323 ~~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L-~~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~~~G 401 (591)
..+.|++||||.||||.+ .+...+++++.++..+ .++++|+|+.|++++....+.. .+.+.+..+++.+..+.++|
T Consensus 5 ~~~~div~vlD~SgSM~~-~~~~~~~~~~~~~~~~~~~~~~v~lv~f~~~~~~~~~l~--~~~~~~~~~i~~l~~~~~~g 81 (185)
T 3n2n_F 5 YGGFDLYFILDKSGSVLH-HWNEIYYFVEQLAHKFISPQLRMSFIVFSTRGTTLMKLT--EDREQIRQGLEELQKVLPGG 81 (185)
T ss_dssp BSEEEEEEEEECSGGGGG-GHHHHHHHHHHHHHHCCCTTEEEEEEEESSSEEEEEEEE--CCHHHHHHHHHHHHTCCCCS
T ss_pred CCCeeEEEEEeCCCChhh-hHHHHHHHHHHHHHHhCCCCcEEEEEEEecCceEEeccC--CCHHHHHHHHHHHhhhcCCC
Confidence 357899999999999987 5777888888777664 5689999999999998776543 37788888888887777789
Q ss_pred CCchHHHHHHHHHhhhc----CCCCccEEEEEecCCCCChhh--HHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHH
Q 007719 402 GTNILLPLKQAIKLLSD----TSESIPLIFLITDGTVGDERG--ICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQIL 475 (591)
Q Consensus 402 gT~l~~aL~~a~~~l~~----~~~~~~~IillTDG~~~~~~~--i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~L 475 (591)
+|++..||+.|.+.+.. .....+.|||+|||.+++... .....+.. . ..+++||+||+| +.+...|+.|
T Consensus 82 ~T~~~~al~~a~~~l~~~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~~~-~---~~gi~i~~igvg-~~~~~~L~~i 156 (185)
T 3n2n_F 82 DTYMHEGFERASEQIYYENRQGYRTASVIIALTDGELHEDLFFYSEREANRS-R---DLGAIVYAVGVK-DFNETQLARI 156 (185)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCBCEEEEEEEEECCCCCHHHHHHHHHHHHHH-H---HTTEEEEEEECS-SCCHHHHTTT
T ss_pred CccHHHHHHHHHHHHhhccccCCCCCcEEEEEcCCCCCCCcccchHHHHHHH-H---HCCCEEEEEEec-cCCHHHHHHH
Confidence 99999999999997732 123567999999999875432 12222222 2 235999999999 7799999999
Q ss_pred HHhCCCEEEEcCC-CCchHHHHHHHHHHh
Q 007719 476 AQIGRGYYDSAYD-PGSVDYRIRRFFTAA 503 (591)
Q Consensus 476 A~~~~G~~~~v~~-~~~l~~~~~~~~~~~ 503 (591)
|..+ |.++.+.+ .+++...+.++.+++
T Consensus 157 A~~~-~~~~~~~~~~~~L~~~~~~i~~~i 184 (185)
T 3n2n_F 157 ADSK-DHVFPVNDGFQALQGIIHSILKKS 184 (185)
T ss_dssp SSSG-GGEEEHHHHHHHHHHHHHHHHHTB
T ss_pred hCCC-CCeEEeccHHHHHHHHHHHHHHhc
Confidence 9765 66666776 677777666666554
No 14
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A
Probab=99.80 E-value=1.1e-18 Score=165.74 Aligned_cols=163 Identities=15% Similarity=0.157 Sum_probs=124.9
Q ss_pred cCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcCC---CCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCCC-
Q 007719 324 FRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNP---QDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVA- 399 (591)
Q Consensus 324 ~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~~---~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~~- 399 (591)
.+.+++||+|+||||.+.+++.+|+++..+++.+.. +++|+|+.|++++....+.....+.+.+ .+.++.+..
T Consensus 4 ~~~div~vlD~SgSm~~~~~~~~k~~~~~~~~~l~~~~~~~rv~lv~f~~~~~~~~~l~~~~~~~~~---~~~i~~l~~~ 80 (189)
T 1atz_A 4 QPLDVILLLDGSSSFPASYFDEMKSFAKAFISKANIGPRLTQVSVLQYGSITTIDVPWNVVPEKAHL---LSLVDVMQRE 80 (189)
T ss_dssp CCEEEEEEEECSSSSCHHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEEEEECTTCCCCHHHH---HHHHHTCCCC
T ss_pred CceeEEEEEeCCCCCChhhHHHHHHHHHHHHHhcCcCCCCeEEEEEEECCcceEEEecCCCCCHHHH---HHHHHhCcCC
Confidence 468999999999999999999999999999999863 4799999999999876664333444444 455666765
Q ss_pred CCCCchHHHHHHHHHhhhcC-----CCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHH
Q 007719 400 GGGTNILLPLKQAIKLLSDT-----SESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQI 474 (591)
Q Consensus 400 ~GgT~l~~aL~~a~~~l~~~-----~~~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~ 474 (591)
+|+|++..||+.|.+.+... ++..+.+|++|||..++. ..+.++.. .+ .+++||+||+|...|...|+.
T Consensus 81 ~g~T~~~~aL~~a~~~l~~~~~g~r~~~~~~vivltdg~~~~~--~~~~~~~~-~~---~gi~v~~igvG~~~~~~~L~~ 154 (189)
T 1atz_A 81 GGPSQIGDALGFAVRYLTSEMHGARPGASKAVVILVTDVSVDS--VDAAADAA-RS---NRVTVFPIGIGDRYDAAQLRI 154 (189)
T ss_dssp CCCCCHHHHHHHHHHHHHSCCTTCCTTSEEEEEEEECSCCSSC--CHHHHHHH-HH---TTEEEEEEEESSSSCHHHHHH
T ss_pred CCcchHHHHHHHHHHHHhccccCCCCCCCcEEEEEeCCCCCch--HHHHHHHH-HH---CCCEEEEEEcCCcCCHHHHHH
Confidence 69999999999999987542 234456888999987643 22222222 21 359999999999999999999
Q ss_pred HHHhCCC-EEEEcCCCCchHHH
Q 007719 475 LAQIGRG-YYDSAYDPGSVDYR 495 (591)
Q Consensus 475 LA~~~~G-~~~~v~~~~~l~~~ 495 (591)
||..++| +++.+.+.+++...
T Consensus 155 iA~~~~~~~~~~~~~~~~~~~l 176 (189)
T 1atz_A 155 LAGPAGDSNVVKLQRIEDLPTM 176 (189)
T ss_dssp HTGGGGGGGCEEESSTTHHHHH
T ss_pred HHCCCcccCEEEecChhhHHHH
Confidence 9999876 45667777777654
No 15
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=99.80 E-value=7.9e-19 Score=168.39 Aligned_cols=172 Identities=17% Similarity=0.095 Sum_probs=133.1
Q ss_pred CceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcC---CCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCCCC-
Q 007719 325 RKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLN---PQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAG- 400 (591)
Q Consensus 325 ~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~---~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~~~- 400 (591)
+.+++||||.||||. .++.+|+++..+++.+. ++++|+|+.|++++....+.... .+...+.+.|+++.+.
T Consensus 6 ~~div~vlD~SgSm~--~~~~~k~~~~~~~~~l~~~~~~~rvglv~f~~~~~~~~~l~~~---~~~~~~~~~i~~l~~~~ 80 (200)
T 1v7p_C 6 LIDVVVVCDESNSIY--PWDAVKNFLEKFVQGLDIGPTKTQVGLIQYANNPRVVFNLNTY---KTKEEMIVATSQTSQYG 80 (200)
T ss_dssp CEEEEEEEECCTTCC--CHHHHHHHHHHHHHTSCBSTTSEEEEEEEESSSEEEEECTTTC---SSHHHHHHHHHHCCCCC
T ss_pred cccEEEEEECCCCcc--cHHHHHHHHHHHHHhcCCCCCceEEEEEEECCCceEEEeCCCc---CCHHHHHHHHHhhhccC
Confidence 689999999999997 49999999999999996 68999999999999876654322 2445566667778765
Q ss_pred C-CCchHHHHHHHHHh-hhc----CCCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcC-----CCCC-
Q 007719 401 G-GTNILLPLKQAIKL-LSD----TSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVG-----LYCN- 468 (591)
Q Consensus 401 G-gT~l~~aL~~a~~~-l~~----~~~~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG-----~~~~- 468 (591)
| +|++..||+.|.+. +.. +++..+.|||+|||..++.....+.++.. .+ .+++||+||+| ...+
T Consensus 81 G~~T~~~~al~~a~~~~~~~~~g~r~~~~~~ivllTDG~~~~~~~~~~~~~~~-~~---~gi~i~~igvg~~~~~~~~~~ 156 (200)
T 1v7p_C 81 GDLTNTFGAIQYARKYAYSAASGGRRSATKVMVVVTDGESHDGSMLKAVIDQC-NH---DNILRFGIAVLGYLNRNALDT 156 (200)
T ss_dssp CSCCCHHHHHHHHHHHTTSGGGTCCTTSEEEEEEEESSCCSCGGGHHHHHHHH-HH---TTEEEEEEEECHHHHHTTCCC
T ss_pred CCCCcHHHHHHHHHHhhcccccCCCCCCCeEEEEEccCCCCCcccHHHHHHHH-HH---CCCEEEEEEecccccccccch
Confidence 4 69999999999986 432 13456789999999998765443333333 22 35999999994 4555
Q ss_pred ---HHHHHHHHHhCCCEE-EEcCCCCchHHHHHHHHHHhcc
Q 007719 469 ---HYFLQILAQIGRGYY-DSAYDPGSVDYRIRRFFTAASS 505 (591)
Q Consensus 469 ---~~lL~~LA~~~~G~~-~~v~~~~~l~~~~~~~~~~~~~ 505 (591)
...|+.||..++|.| +.+.+.+++...+..+.++++.
T Consensus 157 ~~~~~~L~~iA~~~~g~~~~~~~~~~~l~~i~~~i~~~ic~ 197 (200)
T 1v7p_C 157 KNLIKEIKAIASIPTERYFFNVSDEAALLEKAGTLGEQIFS 197 (200)
T ss_dssp HHHHHHHHHHSCSSHHHHEEEESSSGGGHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHhCCccHhcEEEcCCHHHHHHHHHHHHhhhcC
Confidence 567999999998865 6688889999888888877753
No 16
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...
Probab=99.79 E-value=6.4e-20 Score=172.96 Aligned_cols=165 Identities=14% Similarity=0.078 Sum_probs=124.8
Q ss_pred CceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcCC-CCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCCC-CCC
Q 007719 325 RKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNP-QDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVA-GGG 402 (591)
Q Consensus 325 ~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~~-~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~~-~Gg 402 (591)
|.|++||+|.||||.+.+++.+|+++..+++.|.+ +++|+|+.|++++....+.....+.+++..++ +.+.. .|+
T Consensus 2 ~~divfvlD~S~Sm~~~~~~~~k~~~~~~~~~l~~~~~rv~vv~fs~~~~~~~~l~~~~~~~~~~~~~---~~i~~~~g~ 78 (179)
T 1mjn_A 2 NVDLVFLFDGSMSLQPDEFQKILDFMKDVMKKCSNTSYQFAAVQFSTSYKTEFDFSDYVKRKDPDALL---KHVKHMLLL 78 (179)
T ss_dssp CEEEEEEEECBTTCCHHHHHHHHHHHHHHHHHTTTSSEEEEEEEESSSEEEEECHHHHHHHCCHHHHH---TTCCCCCBC
T ss_pred CccEEEEEeCCCCCCHHHHHHHHHHHHHHHHHhCCCCeEEEEEEECCceeEEEcCcccCCHHHHHHHH---HhcccCCCC
Confidence 57999999999999998999999999999999965 56999999999988765532222223444554 44443 499
Q ss_pred CchHHHHHHHHH-hhhc----CCCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCC----HHHHH
Q 007719 403 TNILLPLKQAIK-LLSD----TSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCN----HYFLQ 473 (591)
Q Consensus 403 T~l~~aL~~a~~-~l~~----~~~~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~----~~lL~ 473 (591)
|+++.||+.|.+ ++.. +++..+.+||+|||..++..... . ..+++||+||+|...+ ...|+
T Consensus 79 T~~~~aL~~a~~~~~~~~~g~r~~~~~~iillTDG~~~~~~~~~-------~---~~~i~i~~igvG~~~~~~~~~~~L~ 148 (179)
T 1mjn_A 79 TNTFGAINYVATEVFREELGARPDATKVLIIITDGEATDSGNID-------A---AKDIIRYIIGIGKHFQTKESQETLH 148 (179)
T ss_dssp CCHHHHHHHHHHHTSSGGGTCCTTSEEEEEEEESSCCSSCSCCG-------G---GTTSEEEEEEESGGGCSHHHHHTTG
T ss_pred ChHHHHHHHHHHHhcccccCCCCCCCeEEEEEcCCCCCCCcchH-------H---HCCCEEEEEEccccccccccHHHHH
Confidence 999999999996 4432 13456799999999987654321 1 2359999999998877 37899
Q ss_pred HHHHhCCCE-EEEcCCCCchHHHHHHHHHH
Q 007719 474 ILAQIGRGY-YDSAYDPGSVDYRIRRFFTA 502 (591)
Q Consensus 474 ~LA~~~~G~-~~~v~~~~~l~~~~~~~~~~ 502 (591)
.||..++|. ++.+.+.+++...+.++.++
T Consensus 149 ~iA~~~~~~~~~~~~~~~~L~~i~~~i~~~ 178 (179)
T 1mjn_A 149 KFASKPASEFVKILDTFEKLKDLCTELQKK 178 (179)
T ss_dssp GGSCSCHHHHEEEESSGGGSCCHHHHHHHH
T ss_pred HHhCCccHhcEEEeCCHHHHHHHHHHHHhh
Confidence 999988874 57788888887766666554
No 17
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=99.77 E-value=4.6e-18 Score=160.02 Aligned_cols=145 Identities=19% Similarity=0.200 Sum_probs=104.0
Q ss_pred CceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcC---CCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCC-CC
Q 007719 325 RKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLN---PQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLV-AG 400 (591)
Q Consensus 325 ~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~---~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~-~~ 400 (591)
+.+++||||.||||.+.+++.+|+++..+++.|. ++++|+|+.|++++....+..... ..+.+.+.+.|+++. .+
T Consensus 17 ~~divfvlD~SgSm~~~~~~~~k~~~~~~i~~l~~~~~~~rv~vv~F~~~~~~~~~l~~~~-~~~~~~~~~~i~~l~~~~ 95 (178)
T 2xgg_A 17 QLDICFLIDSSGSIGIQNFRLVKQFLHTFLMVLPIGPEEVNNAVVTYSTDVHLQWDLQSPN-AVDKQLAAHAVLDMPYKK 95 (178)
T ss_dssp CEEEEEEEECCTTTCHHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEEEEECTTSGG-GSCHHHHHHHHHHCCCCC
T ss_pred CeeEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCceEEEEeCCCCC-ccCHHHHHHHHHhCCCCC
Confidence 7999999999999999999999999999999986 358999999999988766543222 114455566677777 56
Q ss_pred CCCchHHHHHHHHHhhhc-----CCCCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHH
Q 007719 401 GGTNILLPLKQAIKLLSD-----TSESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQI 474 (591)
Q Consensus 401 GgT~l~~aL~~a~~~l~~-----~~~~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~ 474 (591)
|+|++..||+.|.+.+.. .++..+.|||+|||.+++...+.+.++.. .+ .+++||+||+|..+|..+|+.
T Consensus 96 g~T~~~~aL~~a~~~l~~~~~g~r~~~~~~iillTDG~~~~~~~~~~~~~~l-~~---~gi~v~~igvG~~~~~~~l~~ 170 (178)
T 2xgg_A 96 GSTNTSDGLKACKQILFTGSRPGREHVPKLVIGMTDGESDSDFRTVRAAKEI-RE---LGGIVTVLAVGHYVAAALVPR 170 (178)
T ss_dssp CCCCHHHHHHHHHHHHHHCCCTTCTTSCEEEEEEESSCCCHHHHHSHHHHHH-HH---TTCEEEEEECC----------
T ss_pred CCccHHHHHHHHHHHhcCcccCCCCCCCEEEEEEcCCCCCCCccHHHHHHHH-HH---CCCEEEEEEcCCcCCHHHHhc
Confidence 999999999999997532 13456799999999988654343333333 22 359999999999999988774
No 18
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Probab=99.77 E-value=9e-19 Score=192.13 Aligned_cols=178 Identities=19% Similarity=0.196 Sum_probs=138.2
Q ss_pred ccCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhc---CCCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCCC
Q 007719 323 VFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKL---NPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVA 399 (591)
Q Consensus 323 ~~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L---~~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~~ 399 (591)
..+.|++||||.||||.+.+++.+|+++..+++.| +++++|+|+.|++++....+... ....+.+.+.+.|+++.+
T Consensus 7 ~~~~divfvlD~SgSM~~~~~~~~k~~~~~l~~~l~~~~~~~rv~lv~f~~~~~~~~~l~~-~~~~~~~~~~~~l~~l~~ 85 (509)
T 2odp_A 7 SGHLNLYLLLDASQSVSENDFLIFKESASLMVDRIFSFEINVSVAIITFASEPKVLMSVLN-DNSRDMTEVISSLENANY 85 (509)
T ss_dssp SSEEEEEEEEECSTTSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEEESSSEEEEECTTS-GGGGCHHHHHHHHHTCCG
T ss_pred CCCeeEEEEEeCCCccchhhHHHHHHHHHHHHHHhhccCCCceEEEEEccCCCceeEeccC-CCCCCHHHHHHHHHhccc
Confidence 35789999999999999999999999999999988 78999999999999988665422 222345566666777766
Q ss_pred C-----CCCchHHHHHHHHHhhhcC-----------CCCccEEEEEecCCCCCh---hhHHHHHHHHHhc--CCCCCCeE
Q 007719 400 G-----GGTNILLPLKQAIKLLSDT-----------SESIPLIFLITDGTVGDE---RGICNEIKSYLTN--TRSISPRI 458 (591)
Q Consensus 400 ~-----GgT~l~~aL~~a~~~l~~~-----------~~~~~~IillTDG~~~~~---~~i~~~v~~~~~~--~~~~~~ri 458 (591)
. |||++..||+.|.+++... .+..+.|||+|||..++. ....+.+++.+.. ....+++|
T Consensus 86 ~~~~~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i 165 (509)
T 2odp_A 86 KDHENGTGTNTYAALNSVYLMMNNQMRLLGMETMAWQEIRHAIILLTDGKSNMGGSPKTAVDHIREILNINQKRNDYLDI 165 (509)
T ss_dssp GGGTTCCSCCHHHHHHHHHHHHHHHHHHHCTTSHHHHTEEEEEEEESCSCCCSSSCTHHHHHHHHHHTTCCSTTGGGEEE
T ss_pred ccCCCCCCccHHHHHHHHHHHHhhcccccccccccccccceEEEEECCCCccCCCChhHHHHHHHHHhhccccccCceEE
Confidence 5 9999999999999988431 124578999999998753 3344455543321 11345899
Q ss_pred EEEEcCCC-CCHHHHHHHHHhCCCE--EEEcCCCCchHHHHHHHHH
Q 007719 459 CTFGVGLY-CNHYFLQILAQIGRGY--YDSAYDPGSVDYRIRRFFT 501 (591)
Q Consensus 459 ~t~GiG~~-~~~~lL~~LA~~~~G~--~~~v~~~~~l~~~~~~~~~ 501 (591)
|+||+|.. .+...|+.||..++|. ++.+.+.+++...+.+++.
T Consensus 166 ~~iGvG~~~~~~~~L~~iA~~~~G~~~~~~~~~~~~l~~~~~~i~~ 211 (509)
T 2odp_A 166 YAIGVGKLDVDWRELNELGSKKDGERHAFILQDTKALHQVFEHMLD 211 (509)
T ss_dssp EEEEESSSCCCHHHHHHHSCCCTTCCCEEEESSHHHHHHHHHHHEE
T ss_pred EEEEcCCCcccHHHHHhhccCCCCceeeEEecCHHHHHHHHHhhhc
Confidence 99999998 9999999999999998 8888888777766666544
No 19
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus}
Probab=99.77 E-value=4.6e-21 Score=182.20 Aligned_cols=173 Identities=20% Similarity=0.241 Sum_probs=126.5
Q ss_pred ccCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhc-CCCCeEEEEEeCC-ceEeeecCcccCCHHHHHHHHHHHhcCCCC
Q 007719 323 VFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKL-NPQDSFNIIAFNG-ETHLFSSSMKLASQGTIINATQWLSSLVAG 400 (591)
Q Consensus 323 ~~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L-~~~d~f~Ii~F~~-~~~~~~~~~~~~~~~~~~~a~~~i~~l~~~ 400 (591)
..+.+++||||+||||.|.+++.+|+++..++..+ .++++|+|+.|++ ....+.+. + .+...+.++|+.+.++
T Consensus 3 ~~~~~vv~vlD~SgSM~~~~~~~~k~~~~~~~~~~~~~~~~v~lv~f~~~~~~~~~~~----~-~~~~~~~~~i~~l~~~ 77 (189)
T 2x31_A 3 MSDRVLIFAVDASGSAAVARLSEAKGAVELLLGRAYAARDHVSLITFRGTAAQVLLQP----S-RSLTQTKRQLQGLPGG 77 (189)
T ss_dssp SSCCEEEEEEECCTTSCC--CHHHHHHHHHHHHHSCTTTSCCCEEEESBSCCCBCTTT----C-SCHHHHHHHHHHCCCC
T ss_pred CCCeEEEEEEECCCCCCchHHHHHHHHHHHHHHHhcCCCcEEEEEEECCCCceEecCC----C-CCHHHHHHHHhcCCCC
Confidence 46889999999999999999999999999999888 8899999999997 45544332 1 1456677788899999
Q ss_pred CCCchHHHHHHHHHhhhcCC--CCccEEEEEecCCCCChhhH-------HHHHHHHHhcCCCCCCeEEEEEcCCCCCHHH
Q 007719 401 GGTNILLPLKQAIKLLSDTS--ESIPLIFLITDGTVGDERGI-------CNEIKSYLTNTRSISPRICTFGVGLYCNHYF 471 (591)
Q Consensus 401 GgT~l~~aL~~a~~~l~~~~--~~~~~IillTDG~~~~~~~i-------~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~l 471 (591)
|+|++..||+.|++.+.... +..+.|||+|||.+++...- .+.+.+.+......++++|+||+|.. +..+
T Consensus 78 g~T~~~~al~~a~~~l~~~~~~~~~~~ivliTDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~ig~g~~-~~~~ 156 (189)
T 2x31_A 78 GGTPLASGMEMAMVTAKQARSRGMTPTIALLTDGRGNIALDGTANRELAGEQATKVARAIRASGMPAVIIDTAMR-PNPA 156 (189)
T ss_dssp BCCCCHHHHHHHHHHHHTCTTTCSSEEEEECCBSCCSSCCTHHHHHGGGTCCCEEEEECTGGGGSCCTHHHHHHS-SCSS
T ss_pred CCCCHHHHHHHHHHHHHhccCCCCceEEEEECCCCCCCCCCccccccchhHHHHHHHHHHHHcCCeEEEEecCCC-CHHH
Confidence 99999999999999887542 34679999999998753210 00000111111223588999999987 7778
Q ss_pred HHHHHHhCCCEEEEcCCCCchHHHHHHHHHHh
Q 007719 472 LQILAQIGRGYYDSAYDPGSVDYRIRRFFTAA 503 (591)
Q Consensus 472 L~~LA~~~~G~~~~v~~~~~l~~~~~~~~~~~ 503 (591)
|+.||+.++|.|+++.+ .-.+.+.+++..+
T Consensus 157 L~~iA~~~~G~~~~~~~--~~~~~~~~~~~~~ 186 (189)
T 2x31_A 157 LVDLARTMDAHYIALPR--ATAHKMADVLGAA 186 (189)
T ss_dssp SCSTTTEEEESSTTTHH--HHHHHHHHHHHHC
T ss_pred HHHHHHhcCCeEEECCC--cchHHHHHHHHHh
Confidence 99999999999877632 2234455555543
No 20
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*
Probab=99.75 E-value=4.5e-18 Score=194.99 Aligned_cols=188 Identities=19% Similarity=0.236 Sum_probs=146.7
Q ss_pred ccCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcC---CCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCC-
Q 007719 323 VFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLN---PQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLV- 398 (591)
Q Consensus 323 ~~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~---~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~- 398 (591)
..+.|++||||.||||.+.+++.+|+++..+++.|. .++||+|+.|++++....+... .+..+.+.+.+.|+++.
T Consensus 241 ~~~~div~vlD~SgSM~~~~~~~~k~~~~~~i~~l~~~~~~~rv~lv~f~~~~~~~~~l~~-~~~~~~~~~~~~i~~l~~ 319 (741)
T 3hrz_D 241 SGSMNIYLVLDGSGSIGASDFTGAKKCLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVSE-ADSSNADWVTKQLNEINY 319 (741)
T ss_dssp TCEEEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEEEEECTTS-GGGGCHHHHHHHHTTCCG
T ss_pred CCceeEEEEeccCCcccccchHHHHHHHHHHHHhhhccCCCceEEEEEeccCCceeEeecc-cCCcCHHHHHHHHHhccc
Confidence 457899999999999999999999999999998875 4689999999999887765432 33345566777788887
Q ss_pred ----CCCCCchHHHHHHHHHhhhcC--------CCCccEEEEEecCCCCCh---hhHHHHHHHHH------hcCCCCCCe
Q 007719 399 ----AGGGTNILLPLKQAIKLLSDT--------SESIPLIFLITDGTVGDE---RGICNEIKSYL------TNTRSISPR 457 (591)
Q Consensus 399 ----~~GgT~l~~aL~~a~~~l~~~--------~~~~~~IillTDG~~~~~---~~i~~~v~~~~------~~~~~~~~r 457 (591)
.+|||++..||+.|++.+... .+..+.|||||||+.+.. ....+.++... ......+++
T Consensus 320 ~~~~~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~n~g~~p~~~~~~i~~~~~~~~~a~~~~~~gi~ 399 (741)
T 3hrz_D 320 EDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYLD 399 (741)
T ss_dssp GGGSSSCCCCHHHHHHHHHHHHCCC--CCCTTGGGEEEEEEEEECSCCCSSSCTHHHHHHHHHHTTCSSCTTCCCGGGEE
T ss_pred ccccCCCChHHHHHHHHHHHHHhhhhhccccchhccCeEEEEECCCccccCCCchHHHHHHHHHhhcccccccccccCee
Confidence 689999999999999988321 123468999999988743 33334444321 122345689
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCE--EEEcCCCCchHHHHHHHHHHhccceEEeE
Q 007719 458 ICTFGVGLYCNHYFLQILAQIGRGY--YDSAYDPGSVDYRIRRFFTAASSVFLTNM 511 (591)
Q Consensus 458 i~t~GiG~~~~~~lL~~LA~~~~G~--~~~v~~~~~l~~~~~~~~~~~~~p~~~~v 511 (591)
||+||+|.+.|...|+.||+.++|. ++.+.+.++|.+.+.++++++....+..+
T Consensus 400 i~~igvG~~~~~~~L~~ia~~~~g~~~~~~~~~~~~L~~~~~~l~~~~~~~~~CG~ 455 (741)
T 3hrz_D 400 VYVFGVGPLVNQVNINALASKKDNEQHVFKVKDMENLEDVFYQMIDESQSLSLCGM 455 (741)
T ss_dssp EEEEECSSSCCHHHHHHHSCCCTTCCCEECBSSHHHHHHHHHHHHHHHSCTTSTTC
T ss_pred EEEEeCCCcCCHHHHHHHhcCCCCcceEEEeCCHHHHHHHHHHhhccccccccccc
Confidence 9999999999999999999999995 88888889999999999988765544443
No 21
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Probab=99.75 E-value=4.7e-18 Score=185.80 Aligned_cols=180 Identities=18% Similarity=0.226 Sum_probs=136.2
Q ss_pred CceEEEEEeCCcCCCcchHHHHHHHHHHHHHhc---CCCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCC---
Q 007719 325 RKDVVFLVDVSGSMQGVLLEQTKNALSASLSKL---NPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLV--- 398 (591)
Q Consensus 325 ~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L---~~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~--- 398 (591)
|.|++||||.||||.+.+++.+|+++..+++.| +.+++|+|+.|++++....+...+ ...+.+.+.+.|+++.
T Consensus 1 ~~div~vlD~SgSM~~~~~~~~k~~~~~~~~~l~~~~~~~~v~lv~f~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~~ 79 (497)
T 1rrk_A 1 SMNIYLVLDGSDSIGASNFTGAKKVLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVSEA-DSSNADWVTKQLNEINYED 79 (497)
T ss_dssp CEEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEEEEECTTSG-GGGCHHHHHHHHHHCCGGG
T ss_pred CeeEEEEEECCCCcchhhHHHHHHHHHHHHHHhhccCCCceEEEEEecCCceEeeccccc-cccCHHHHHHHHHhCcCcc
Confidence 468999999999999999999999999999875 457999999999998776532212 1123344455556555
Q ss_pred --CCCCCchHHHHHHHHHhhhcC--------CCCccEEEEEecCCCCCh---hhHHHHHHHHHh------cCCCCCCeEE
Q 007719 399 --AGGGTNILLPLKQAIKLLSDT--------SESIPLIFLITDGTVGDE---RGICNEIKSYLT------NTRSISPRIC 459 (591)
Q Consensus 399 --~~GgT~l~~aL~~a~~~l~~~--------~~~~~~IillTDG~~~~~---~~i~~~v~~~~~------~~~~~~~ri~ 459 (591)
.+|+|++..||+.|.+.+... ++..+.|||+|||..+.. ....+.+++... .....+++||
T Consensus 80 ~~~~g~T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 159 (497)
T 1rrk_A 80 HKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYLDVY 159 (497)
T ss_dssp SCCTTCCCHHHHHHHHHHHHCCC------CGGGCEEEEEEEECSCCCSSSCTHHHHHHHHHHTTCSSCC-CCCGGGEEEE
T ss_pred ccccCccCHHHHHHHHHHHhhhhhccccccccccceEEEEEeCCCcccCCChhHHHHHHHHHhhhhcccccchhcCeeEE
Confidence 458999999999999998432 235679999999998743 334444443311 1122368999
Q ss_pred EEEcCCCCCHHHHHHHHHhCCC--EEEEcCCCCchHHHHHHHHHHhcc
Q 007719 460 TFGVGLYCNHYFLQILAQIGRG--YYDSAYDPGSVDYRIRRFFTAASS 505 (591)
Q Consensus 460 t~GiG~~~~~~lL~~LA~~~~G--~~~~v~~~~~l~~~~~~~~~~~~~ 505 (591)
+||+|...+...|+.||+.++| .++.+.+.+++.+.+.++++....
T Consensus 160 ~igvG~~~~~~~L~~iA~~~~g~~~~~~~~~~~~l~~~~~~~i~~~~~ 207 (497)
T 1rrk_A 160 VFGVGPLVNQVNINALASKKDNEQHVCKVKDMECLEDVFYQMIDESQS 207 (497)
T ss_dssp EEECSSSCCHHHHHHHSCCCTTCCCEEETTCHHHHHHHHHHHSCGGGG
T ss_pred EecCCCccCHHHHHHHhcCCCCcceEEEeCCHHHHhhhhhhcccCCCC
Confidence 9999999999999999999999 899999888888888877766543
No 22
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=99.62 E-value=2e-16 Score=186.34 Aligned_cols=176 Identities=18% Similarity=0.162 Sum_probs=134.0
Q ss_pred ccCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcCCC-CeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCC-CC
Q 007719 323 VFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQ-DSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLV-AG 400 (591)
Q Consensus 323 ~~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~~~-d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~-~~ 400 (591)
..+.||+||||.||||.+.+++.+|+++..+++.|.+. +||+|+.|++++....+.....+.+++ .+.++++. .+
T Consensus 128 ~~~~DIvfvlD~SgSm~~~~f~~~k~fv~~lv~~~~~~~~rVglV~Fs~~~~~~~~lt~~~~~~~l---~~ai~~i~~~g 204 (1095)
T 3k6s_A 128 RQEQDIVFLIDGSGSISSRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQTHFTFEEFRRSSNP---LSLLASVHQLQ 204 (1095)
T ss_dssp CCCEEEEEEEECCTTSCSHHHHHHHHHHHHHHHSSCSSSEEEEEEEESSSEEEEECSHHHHSCSCG---GGGTTTCCCCC
T ss_pred CCCccEEEEEcCCCCCChhHHHHHHHHHHHHHHhccccccEEEEEEECCeEEEEecCcccCCHHHH---HHHHhhhhccc
Confidence 34789999999999999999999999999999999864 899999999999887654332233333 34456654 35
Q ss_pred CCCchHHHHHHHHHhhhcC-----CCCccEEEEEecCCCC-ChhhHHHHHHHHHhcCCCCCCeEEEEEcCCC----CCHH
Q 007719 401 GGTNILLPLKQAIKLLSDT-----SESIPLIFLITDGTVG-DERGICNEIKSYLTNTRSISPRICTFGVGLY----CNHY 470 (591)
Q Consensus 401 GgT~l~~aL~~a~~~l~~~-----~~~~~~IillTDG~~~-~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~----~~~~ 470 (591)
|+|++..||+.|++.+... ++..+.||++|||+.+ +.....+.++.... .+++||+||+|.. .+..
T Consensus 205 G~T~~g~AL~~a~~~lf~~~~g~R~~~~kviIllTDG~~~~d~~~~~~~a~~~r~----~GI~i~aIGVG~~~~~~~d~~ 280 (1095)
T 3k6s_A 205 GFTYTATAIQNVVHRLFHASYGARRDAAKILIVITDGKKEGDSLDYKDVIPMADA----AGIIRYAIGVGLAFQNRNSWK 280 (1095)
T ss_dssp SCBCHHHHHHHHHTTTTSTTTTCCSSSEEEEEEEESSCCBSCSSCHHHHHHHHHH----HCEEECCEEBSSGGGSTTSSH
T ss_pred CCChHHHHHHHHHHhhccccccCCCCCCeEEEEEeCCCcCCCchhHHHHHHHHHH----CCCEEEEEecccccccccCHH
Confidence 9999999999998865321 3445799999999995 43333333333222 2589999999987 6889
Q ss_pred HHHHHHHhCCC-EEEEcCCCCchHHHHHHHHHHhcc
Q 007719 471 FLQILAQIGRG-YYDSAYDPGSVDYRIRRFFTAASS 505 (591)
Q Consensus 471 lL~~LA~~~~G-~~~~v~~~~~l~~~~~~~~~~~~~ 505 (591)
.|+.||..++| +++.+.+.+++.+.+.++.+++..
T Consensus 281 eL~~IAs~p~g~~vf~v~d~~~L~~i~~~L~~~Ic~ 316 (1095)
T 3k6s_A 281 ELNDIASKPSQEHIFKVEDFDALKDIQNQLKEKIFA 316 (1095)
T ss_dssp HHHTTSCSSTTTSCCCBSCSGGGGSSTTTHHHHHHT
T ss_pred HHHHHHcCCCCceEEEcCCHHHHHHHHHHhhhhhhc
Confidence 99999999877 677788888888777777777653
No 23
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=99.57 E-value=1.2e-13 Score=131.12 Aligned_cols=155 Identities=14% Similarity=0.128 Sum_probs=111.5
Q ss_pred ceEEEEEeCCcCCCc-----chHHHHHHHHHHHHHh---cCCCCeEEEEEeCCc-eEeeecCcccCCHHHHHHHHHHHhc
Q 007719 326 KDVVFLVDVSGSMQG-----VLLEQTKNALSASLSK---LNPQDSFNIIAFNGE-THLFSSSMKLASQGTIINATQWLSS 396 (591)
Q Consensus 326 ~~ivfviD~SgSM~g-----~~i~~ak~al~~~l~~---L~~~d~f~Ii~F~~~-~~~~~~~~~~~~~~~~~~a~~~i~~ 396 (591)
..++|+||.|+||.. ++++.+|+++..++.. .+++|+++|++|+++ +....+.. .+ .......|++
T Consensus 3 e~lvlvlD~S~SM~~~D~~psRl~~ak~~~~~~~~~~~~~~~~d~vGLV~fa~~~a~~~~plT--~d---~~~i~~~L~~ 77 (192)
T 2x5n_A 3 EATMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQVLSTLT--RD---YGKFLSAMHD 77 (192)
T ss_dssp EEEEEEECCSGGGGCTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCCEEEEEE--SC---HHHHHHHHTT
T ss_pred eEEEEEEECCHhhccCCCCCCHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCcEEecCCC--CC---HHHHHHHHHc
Confidence 468999999999973 5899999999887764 367899999999984 77665432 23 4455666788
Q ss_pred CCCCCCCchHHHHHHHHHhhhcCC---CCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCCC-CHHHH
Q 007719 397 LVAGGGTNILLPLKQAIKLLSDTS---ESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLYC-NHYFL 472 (591)
Q Consensus 397 l~~~GgT~l~~aL~~a~~~l~~~~---~~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~-~~~lL 472 (591)
+.+.|+|++..||..|.+.+.+.. ...|.|+|++|+...++.+..+.++.... .+++|+++|+|... |.. |
T Consensus 78 l~~~g~t~l~~aL~~A~~~l~~~~~~~~~~riiil~~~~~~~~~~~~~~~a~~lk~----~gi~v~~Ig~G~~~~~~~-l 152 (192)
T 2x5n_A 78 LPVRGNAKFGDGIQIAQLALKHRENKIQRQRIVAFVGSPIVEDEKNLIRLAKRMKK----NNVAIDIIHIGELQNESA-L 152 (192)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHTCSCTTSEEEEEEEECSCCSSCHHHHHHHHHHHHH----TTEEEEEEEESCC---CH-H
T ss_pred CCCCCCchHHHHHHHHHHHHHhccccCCCceEEEEEECCCCCCchhHHHHHHHHHH----CCCEEEEEEeCCCCccHH-H
Confidence 889999999999999999987643 12344667766664445555444444322 35999999999764 446 9
Q ss_pred HHHHHhC----CCEEEEcCCCC
Q 007719 473 QILAQIG----RGYYDSAYDPG 490 (591)
Q Consensus 473 ~~LA~~~----~G~~~~v~~~~ 490 (591)
+.+|+.+ +++|..+.+..
T Consensus 153 ~~la~~~n~~~~s~~~~~~~~~ 174 (192)
T 2x5n_A 153 QHFIDAANSSDSCHLVSIPPSP 174 (192)
T ss_dssp HHHHHHHCSTTCCEEEEECCCS
T ss_pred HHHHHhccCCCceEEEEecCcc
Confidence 9999993 34566565554
No 24
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.56 E-value=4.8e-14 Score=139.42 Aligned_cols=146 Identities=15% Similarity=0.136 Sum_probs=112.7
Q ss_pred eEEEEEeCCcCCCc-----chHHHHHHHHHHHHH---hcCCCCeEEEEEeCCce-EeeecCcccCCHHHHHHHHHHHhcC
Q 007719 327 DVVFLVDVSGSMQG-----VLLEQTKNALSASLS---KLNPQDSFNIIAFNGET-HLFSSSMKLASQGTIINATQWLSSL 397 (591)
Q Consensus 327 ~ivfviD~SgSM~g-----~~i~~ak~al~~~l~---~L~~~d~f~Ii~F~~~~-~~~~~~~~~~~~~~~~~a~~~i~~l 397 (591)
.+|||||+|+||.. ++++.+|+|+..+++ +++|.++++|++|.+.. ..+.+. ..+ ...++..|+.+
T Consensus 5 AtViviD~S~SM~~~D~~PsRl~a~k~Av~~li~~~~~~nPed~VGLVtfag~~~~vl~pl--T~D---~~~il~aL~~l 79 (268)
T 4b4t_W 5 ATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPRVLSTF--TAE---FGKILAGLHDT 79 (268)
T ss_dssp EEEEEECCSSTTSSTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCEEEEEE--ESC---HHHHHHHHTTC
T ss_pred eEEEEEECCHHHhCCCCCCcHHHHHHHHHHHHHHHHhhCCCcceEEEEEecCCcceeccCC--cch---HHHHHHHhhhc
Confidence 37999999999974 589999999999887 45789999999997764 454432 223 44566678899
Q ss_pred CCCCCCchHHHHHHHHHhhhcC--CCCccEEEEEecCCCCC-hhhHHHHHHHHHhcCCCCCCeEEEEEcCC-CCCHHHHH
Q 007719 398 VAGGGTNILLPLKQAIKLLSDT--SESIPLIFLITDGTVGD-ERGICNEIKSYLTNTRSISPRICTFGVGL-YCNHYFLQ 473 (591)
Q Consensus 398 ~~~GgT~l~~aL~~a~~~l~~~--~~~~~~IillTDG~~~~-~~~i~~~v~~~~~~~~~~~~ri~t~GiG~-~~~~~lL~ 473 (591)
+++|+|++..+|+.|+..+... +.....||++|||..++ +..+.+.+++...+ +++|++||+|. ..|...|+
T Consensus 80 ~~~G~T~l~~gL~~A~~aLk~~~~k~~~~rIIlf~ds~~~~~~~~l~~lak~lkk~----gI~v~vIgFG~~~~n~~kLe 155 (268)
T 4b4t_W 80 QIEGKLHMATALQIAQLTLKHRQNKVQHQRIVAFVCSPISDSRDELIRLAKTLKKN----NVAVDIINFGEIEQNTELLD 155 (268)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCSCTTSEEEEEEEECSCCSSCHHHHHHHHHHHHHH----TEEEEEEEESSCCSSCCHHH
T ss_pred CcCCCCChHHHHHHHHHHHHhcccCCCceEEEEEECCCCCCCHHHHHHHHHHHHHc----CCEEEEEEeCCCccchHHHH
Confidence 9999999999999999998764 34456899999997654 44555555555433 49999999995 56778999
Q ss_pred HHHHhCCC
Q 007719 474 ILAQIGRG 481 (591)
Q Consensus 474 ~LA~~~~G 481 (591)
.+++..+|
T Consensus 156 ~l~~~~Ng 163 (268)
T 4b4t_W 156 EFIAAVNN 163 (268)
T ss_dssp HHHHHHCS
T ss_pred HHHHHhcC
Confidence 99888765
No 25
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae}
Probab=99.44 E-value=4.4e-13 Score=153.80 Aligned_cols=114 Identities=22% Similarity=0.292 Sum_probs=87.4
Q ss_pred CccCceEEEEEeCCcCCCcc------hHHHHHHHHHHHHHhcC--CCCeEEEEEeCCceEe-----e----ec-------
Q 007719 322 KVFRKDVVFLVDVSGSMQGV------LLEQTKNALSASLSKLN--PQDSFNIIAFNGETHL-----F----SS------- 377 (591)
Q Consensus 322 ~~~~~~ivfviD~SgSM~g~------~i~~ak~al~~~l~~L~--~~d~f~Ii~F~~~~~~-----~----~~------- 377 (591)
...+.+++||||.||||.+. +++.+|+++..+++.|. ++|||+||.|++++.. + ..
T Consensus 221 ~~~~~DIVfVLD~SGSM~~~~~~~~~Rl~~~K~a~~~~ld~L~~~~~drVgLV~Fs~~a~~~~~~~v~~~~~~~~g~~~n 300 (893)
T 2ww8_A 221 KSVPLDVVILLDNSNSMSNIRNKNARRAERAGEATRSLIDKITSDSENRVALVTYASTIFDGTEFTVEKGVADKNGKRLN 300 (893)
T ss_dssp TTCCEEEEEEEECCGGGCTTHHHHCCHHHHHHHHHHHHHHHHHTSTTCEEEEEEESSSBCBSCEEEEECCEECTTCCEEC
T ss_pred cCCCccEEEEEeCCCCCCCcCccchhHHHHHHHHHHHHHHHhhcCCCcEEEEEEecCccccccccccccccccccccccc
Confidence 45789999999999999986 47889999999998774 5899999999986532 0 00
Q ss_pred ---------------------CcccCCHHHHHHHHHHHhc----------CCCCCCCchHHHHHHHHHhhhc-C-CCCcc
Q 007719 378 ---------------------SMKLASQGTIINATQWLSS----------LVAGGGTNILLPLKQAIKLLSD-T-SESIP 424 (591)
Q Consensus 378 ---------------------~~~~~~~~~~~~a~~~i~~----------l~~~GgT~l~~aL~~a~~~l~~-~-~~~~~ 424 (591)
.....+.+++..+.+.|.+ +.+.|||++..||..|++++.. . +...+
T Consensus 301 ~~~~w~~~~t~~t~~~~~~~~lpLT~d~~~i~~lk~~I~~~~~~~~G~~~l~~~GGT~i~~AL~~A~~lL~~~~~~~~~k 380 (893)
T 2ww8_A 301 DSLFWNYDQTSFTTNTKDYSYLKLTNDKNDIVELKNKVPTEAEDHDGNRLMYQFGATFTQKALMKADEILTQQARQNSQK 380 (893)
T ss_dssp CCTTSCTTCCEEEEECCBCCEEEEECCHHHHHHHHHHSCSCCCCSCTTSGGGGGCSCCHHHHHHHHHHHHHHHSCSSSEE
T ss_pred cccccccccccccccccccccccccCCHHHHHHHHHHHhhhccccccccccccCCCChHHHHHHHHHHHHHhhcccCCCe
Confidence 0001245566666677764 4457999999999999999963 2 36678
Q ss_pred EEEEEecCCCC
Q 007719 425 LIFLITDGTVG 435 (591)
Q Consensus 425 ~IillTDG~~~ 435 (591)
.|||||||.++
T Consensus 381 vIILLTDG~pt 391 (893)
T 2ww8_A 381 VIFHITDGVPT 391 (893)
T ss_dssp EEEEEESSCCS
T ss_pred EEEEEcCCCCC
Confidence 99999999986
No 26
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Probab=99.29 E-value=9.4e-12 Score=136.85 Aligned_cols=134 Identities=18% Similarity=0.220 Sum_probs=91.3
Q ss_pred ccCceEEEEEeCCcCCCc----chHHHHHHHHHHHHHhcCCCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCC
Q 007719 323 VFRKDVVFLVDVSGSMQG----VLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLV 398 (591)
Q Consensus 323 ~~~~~ivfviD~SgSM~g----~~i~~ak~al~~~l~~L~~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~ 398 (591)
..+.+++|+||+||||.+ .++...+.|+...+..+.++|+++|+.|++..... +. . ...++..+++.+..+
T Consensus 366 ~~~~~v~lvvD~SgSM~~~~~~~~l~~~~~Aa~l~~~~~~~~d~vglv~Fs~~~~~~-~~--t-~~~~l~~~l~~l~~~- 440 (538)
T 1yvr_A 366 PTGKRFLLAIDVSASMNQRVLGSILNASVVAAAMCMLVARTEKDSHMVAFSDEMLPC-PI--T-VNMLLHEVVEKMSDI- 440 (538)
T ss_dssp CCCCCEEEEEECSGGGGSBSTTSSCBHHHHHHHHHHHHHHHCSSEEEEEESSSEECC-SC--C-TTSCHHHHHHHHTTC-
T ss_pred CCCceEEEEEECccccCCCCCCCcHHHHHHHHHHHHHHhccCCceEEEEECCCceEc-CC--C-CcccHHHHHHHHhcC-
Confidence 457899999999999985 24555333344444555678999999999854332 11 1 122377888888765
Q ss_pred CCCCCchHHHHHHHHHhhhcCCCCccEEEEEecCCCCChh-hHHHHHHHHHhcCCCCCCeEEEEEcCCC
Q 007719 399 AGGGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVGDER-GICNEIKSYLTNTRSISPRICTFGVGLY 466 (591)
Q Consensus 399 ~~GgT~l~~aL~~a~~~l~~~~~~~~~IillTDG~~~~~~-~i~~~v~~~~~~~~~~~~ri~t~GiG~~ 466 (591)
++|||++..+|..|.+. ....+.|||+|||..+... ...+.+++..... +..+++|+||+|+.
T Consensus 441 ~~GgT~i~~aL~~a~~~----~~~~~~iIliTDg~~~~g~~~~~~~l~~~~~~~-~~~v~l~~igig~~ 504 (538)
T 1yvr_A 441 TMGSTDCALPMLWAQKT----NTAADIFIVFTDCETNVEDVHPATALKQYREKM-GIPAKLIVCAMTSN 504 (538)
T ss_dssp CCSCCCTTHHHHHHHHT----TCCCSEEEEEECCCCCSSSCCHHHHHHHHHHHH-TCCCEEEEEECSSS
T ss_pred CCCCCcHHHHHHHHHhc----cCCCCEEEEEcCCCCCCCCCCHHHHHHHHHHHh-CCCcEEEEEEecCC
Confidence 67999999999999876 2345799999999986532 2333333322221 23588899999974
No 27
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*
Probab=99.20 E-value=9.1e-11 Score=129.63 Aligned_cols=154 Identities=15% Similarity=0.138 Sum_probs=109.5
Q ss_pred ceEEEEEeCCcCCCc------chHHHHHHHHHHHHHh---cCCCCeEEEEEeCCceEe--------------eecCcccC
Q 007719 326 KDVVFLVDVSGSMQG------VLLEQTKNALSASLSK---LNPQDSFNIIAFNGETHL--------------FSSSMKLA 382 (591)
Q Consensus 326 ~~ivfviD~SgSM~g------~~i~~ak~al~~~l~~---L~~~d~f~Ii~F~~~~~~--------------~~~~~~~~ 382 (591)
..++|+||+|+||.. ++++.+++++..++++ .+++|+++|+.|+++... +.+ +...
T Consensus 8 e~iv~~iDvS~SM~~~d~~~~srl~~ak~~i~~~i~~ki~~~~~D~vGlv~f~~~~~~~plt~d~~y~~i~vl~~-l~~~ 86 (565)
T 1jey_B 8 AAVVLCMDVGFTMSNSIPGIESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTDGTDNPLSGGDQYQNITVHRH-LMLP 86 (565)
T ss_dssp EEEEEEEECCGGGGCCBTTBCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTCTTTCSTTEEEEEE-EECC
T ss_pred eEEEEEEECChHhcccCCCCCCcHHHHHHHHHHHHHHHhcCCCCCEEEEEEEccCCCCCccccccCCCceEEeec-CCCC
Confidence 579999999999964 5899999999999984 688999999999987521 111 1123
Q ss_pred CHHHHHHHHHHHhc-CCCC-CCCchHHHHHHHHHhhhcC--CC--CccEEEEEecCCCCCh-hhHHHHHHHHHhcCCCCC
Q 007719 383 SQGTIINATQWLSS-LVAG-GGTNILLPLKQAIKLLSDT--SE--SIPLIFLITDGTVGDE-RGICNEIKSYLTNTRSIS 455 (591)
Q Consensus 383 ~~~~~~~a~~~i~~-l~~~-GgT~l~~aL~~a~~~l~~~--~~--~~~~IillTDG~~~~~-~~i~~~v~~~~~~~~~~~ 455 (591)
+.+.+ +.|+. +..+ ++|++..||..|..++... .. ..+.|||+|||..+.. ......++.. .+ .+
T Consensus 87 ~~~~l----~~l~~~l~~~~~~t~i~~al~~A~~~l~~~~~~~k~~~krIiLlTDg~~~~~~~~~~~~a~~l-~~---~g 158 (565)
T 1jey_B 87 DFDLL----EDIESKIQPGSQQADFLDALIVSMDVIQHETIGKKFEKRHIEIFTDLSSRFSKSQLDIIIHSL-KK---CD 158 (565)
T ss_dssp CHHHH----HHHHTTCCCCSSCCCHHHHHHHHHHHHHHHSSSSCCSEEEEEEECCCCSCCCCTTHHHHHHHH-HH---TT
T ss_pred CHHHH----HHHHhhccCCCccccHHHHHHHHHHHHHHHhhcccccccEEEEEeCCCCCCCHHHHHHHHHHH-Hh---cC
Confidence 33333 33554 6666 7999999999999998764 21 3579999999987532 2333333333 22 35
Q ss_pred CeEE-EEEcCCC--------------------------------CCHHHHHHHHHhCCC-----EEEEcCC
Q 007719 456 PRIC-TFGVGLY--------------------------------CNHYFLQILAQIGRG-----YYDSAYD 488 (591)
Q Consensus 456 ~ri~-t~GiG~~--------------------------------~~~~lL~~LA~~~~G-----~~~~v~~ 488 (591)
++|+ ++|+|.+ .|..+|+.||+.++| .++.+.+
T Consensus 159 I~i~~vig~g~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~e~~L~~ia~~~~G~~~~s~~~~~~~ 229 (565)
T 1jey_B 159 ISLQFFLPFSLGKEDGSGDRGDGPFRLGGHGPSFPLKGITEQQKEGLEIVKMVMISLEGEDGLDEIYSFSE 229 (565)
T ss_dssp EEEEEEESSCCC----------CCCCTTCSSCCCCTTTSCHHHHHHHHHHHHHHHHHHCGGGGGGEEEHHH
T ss_pred cEEEEEeccCCCcCCcccccccccccccccccccchhccccchhhhHHHHHHHHHhcCCCcccceeecHHH
Confidence 8999 8888743 124569999999999 7877654
No 28
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans}
Probab=99.06 E-value=3.6e-10 Score=123.79 Aligned_cols=151 Identities=19% Similarity=0.192 Sum_probs=96.5
Q ss_pred ccCceEEEEEeCCcCCCc-c-----hHHHHHHHHHHHHHhcCCCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhc
Q 007719 323 VFRKDVVFLVDVSGSMQG-V-----LLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSS 396 (591)
Q Consensus 323 ~~~~~ivfviD~SgSM~g-~-----~i~~ak~al~~~l~~L~~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~ 396 (591)
..+.++++++|+||||.+ . ++..+..|+...+-.+..+|+++|+.|++..... +. ...+.+.++++.+..
T Consensus 360 ~~~~~~lv~vDvSgSM~~~~~~~~~k~~~~e~Aa~la~~~~r~~d~v~lv~Fs~~~~~~-~~---~~~~~l~~~l~~l~~ 435 (535)
T 2nvo_A 360 PANTRHLLALDVSGSMTCGDVAGVPGLTPNMAAAAMSLIALRTEPDALTMGFAEQFRPL-GI---TPRDTLESAMQKAQS 435 (535)
T ss_dssp CCCSEEEEEECCSGGGGSCCGGGCTTCCHHHHHHHHHHHHHHHSSEEEEEEEBSSEEEC-CC---CTTCCHHHHHHHTCC
T ss_pred CCCceEEEEEECCccccCCCCCCCCcccHHHHHHHHHHHHcCcCCceEEEEECCcceEc-CC---CcchhHHHHHHHHhh
Confidence 356899999999999986 2 2333333333334445668899999999965432 11 112455566666654
Q ss_pred CCCCCCCchHHHHHHHHHhhhcCCCCccEEEEEecCCCCChh-hHHHHHHHHHhcCCCCCCeEEEEEcCCC---------
Q 007719 397 LVAGGGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVGDER-GICNEIKSYLTNTRSISPRICTFGVGLY--------- 466 (591)
Q Consensus 397 l~~~GgT~l~~aL~~a~~~l~~~~~~~~~IillTDG~~~~~~-~i~~~v~~~~~~~~~~~~ri~t~GiG~~--------- 466 (591)
. ..|||++..+|+.+.+. ......||++|||+.+... ...+.++..... ...+++++++|+|..
T Consensus 436 ~-~~ggTdi~~~l~~a~~~----~~~~~~vIliTD~~~~~g~~~~~~al~~~r~~-~~~~~klv~i~l~~~~~~~~~~~~ 509 (535)
T 2nvo_A 436 V-SFGGTDCAQPILWAAQE----RLDVDTFVVYTDNETWAGQVHPTVALDQYAQK-MGRAPKLIVVGLTATEFSIADPQR 509 (535)
T ss_dssp S-SBCCCCTTHHHHHHHHT----TCCCSEEEEEESSCCCCCSSCHHHHHHHHHHH-HSCCCEEEEEETTCSCCCCSCTTC
T ss_pred C-CCCCccHHHHHHHHHHh----cCCCCEEEEEeCCCccCCCCCHHHHHHHHHHh-hCCCCeEEEEeccCCCcccCCCCC
Confidence 3 26999999999887654 2345789999999876432 233333333222 123599999999864
Q ss_pred --------CCHHHHHHHHHhCCCEE
Q 007719 467 --------CNHYFLQILAQIGRGYY 483 (591)
Q Consensus 467 --------~~~~lL~~LA~~~~G~~ 483 (591)
.|...|+.||+.++|.|
T Consensus 510 ~~~~~i~g~se~~l~~Ia~~~~G~~ 534 (535)
T 2nvo_A 510 RDMLDVVGFDAAAPNVMTAFARGEV 534 (535)
T ss_dssp SSEEEEEECCTTHHHHHHHHHTTCC
T ss_pred CCceeeeCCCHHHHHHHHHHhCCCc
Confidence 23345666666666654
No 29
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=98.96 E-value=4.6e-10 Score=108.26 Aligned_cols=92 Identities=24% Similarity=0.258 Sum_probs=70.5
Q ss_pred cCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcC---CCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCCCC
Q 007719 324 FRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLN---PQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAG 400 (591)
Q Consensus 324 ~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~---~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~~~ 400 (591)
.+.+++||||+||||.+ +++.+|+++..++.++. ..++|+||+|+++.........+.+... .+...+..+.++
T Consensus 133 ~~~~vvfLVDtSgSM~~-kl~~vk~al~~Ll~sl~~~~~~~~VavV~F~~~~~~~~~ll~pfT~~~--~~~~~l~~L~ag 209 (242)
T 3rag_A 133 VALHLVVCLDTSASMRD-KIPTVREAVRDLALSLKVRSGPLAVSVIAFPGKGEEATRLVQPFSSEV--NVAALEAELVAR 209 (242)
T ss_dssp SCEEEEEEEECSGGGTT-THHHHHHHHHHHHHHHTTSSSCEEEEEEEESCSTTCSCEEEEEEESSC--CHHHHHHHCCCC
T ss_pred CCCCEEEEEECcccHHH-HHHHHHHHHHHHHHHHhccCCCcEEEEEEECCCCccceeecCCCCChH--HHHHHHhhCCCC
Confidence 67899999999999984 99999999999998875 4789999999997521110010112211 345567788999
Q ss_pred CCCchHHHHHHHHHhhhc
Q 007719 401 GGTNILLPLKQAIKLLSD 418 (591)
Q Consensus 401 GgT~l~~aL~~a~~~l~~ 418 (591)
|+|.++.||..|++++.+
T Consensus 210 G~Tplg~AL~~A~~~~~~ 227 (242)
T 3rag_A 210 GGTPTGPAIDHAADLLLS 227 (242)
T ss_dssp SCCCHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHH
Confidence 999999999999998853
No 30
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B
Probab=98.83 E-value=2.6e-08 Score=110.78 Aligned_cols=136 Identities=15% Similarity=0.164 Sum_probs=93.3
Q ss_pred eEEEEEeCCcCCCc-------chHHHHHHHHHHHHHhc---CCCCeEEEEEeCCceE----------eeecCcccCCHHH
Q 007719 327 DVVFLVDVSGSMQG-------VLLEQTKNALSASLSKL---NPQDSFNIIAFNGETH----------LFSSSMKLASQGT 386 (591)
Q Consensus 327 ~ivfviD~SgSM~g-------~~i~~ak~al~~~l~~L---~~~d~f~Ii~F~~~~~----------~~~~~~~~~~~~~ 386 (591)
.++|+||+|+||.. ++++.+++++..++++. +++|+++||.|+++.. .+.+ +...+.+.
T Consensus 37 ~ivf~IDvS~SM~~~d~~~~~srl~~a~~~v~~~i~~kii~~~~D~vGlVlfgt~~t~n~l~~d~i~v~~~-L~~~~~~~ 115 (609)
T 1jey_A 37 SLIFLVDASKAMFESQSEDELTPFDMSIQCIQSVYISKIISSDRDLLAVVFYGTEKDKNSVNFKNIYVLQE-LDNPGAKR 115 (609)
T ss_dssp EEEEEEECSGGGGCCCSSSSCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTCCTTEEEEEE-EECCCHHH
T ss_pred EEEEEEECCHHHcCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCeEEEEEEccCCCCCcCCCCCeEEEec-CCCCCHHH
Confidence 49999999999964 37999999999999863 6789999999999872 2222 22344444
Q ss_pred HHHHHHHHh--------c-CCCCCCCchHHHHHHHHHhhhcCCC--CccEEEEEecCCCCChhh-----HHHHHHHHHhc
Q 007719 387 IINATQWLS--------S-LVAGGGTNILLPLKQAIKLLSDTSE--SIPLIFLITDGTVGDERG-----ICNEIKSYLTN 450 (591)
Q Consensus 387 ~~~a~~~i~--------~-l~~~GgT~l~~aL~~a~~~l~~~~~--~~~~IillTDG~~~~~~~-----i~~~v~~~~~~ 450 (591)
+....+.++ . +....+|++..||..|.+++..... ..+.|||||||....... ....+.+.+.
T Consensus 116 ik~l~~l~~~~~~~~~~~~~g~~~~t~l~daL~~a~~~f~~~~~k~~~k~IiL~TDg~~p~~~~~~~~~~~~~~a~~l~- 194 (609)
T 1jey_A 116 ILELDQFKGQQGQKRFQDMMGHGSDYSLSEVLWVCANLFSDVQFKMSHKRIMLFTNEDNPHGNDSAKASRARTKAGDLR- 194 (609)
T ss_dssp HHHHHTTSHHHHHHHHHHHHCCSCCCCHHHHHHHHHHHHHTCSSCEEEEEEEEEESCSCTTTTCHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHhhcccchhhhhhcCCCCCCCHHHHHHHHHHHHHhhchhhcCCEEEEEcCCCCCCCCchHHHHHHHHHHHHHH-
Confidence 443332221 0 1224689999999999999976422 368999999998753321 1222222222
Q ss_pred CCCCCCeEEEEEcCCC
Q 007719 451 TRSISPRICTFGVGLY 466 (591)
Q Consensus 451 ~~~~~~ri~t~GiG~~ 466 (591)
..+++|++||+|..
T Consensus 195 --~~gI~i~~igig~~ 208 (609)
T 1jey_A 195 --DTGIFLDLMHLKKP 208 (609)
T ss_dssp --HHTEEEEEEEBCCT
T ss_pred --hcCcEEEEEecCCC
Confidence 23599999999965
No 31
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=98.21 E-value=8.9e-05 Score=84.27 Aligned_cols=164 Identities=16% Similarity=0.115 Sum_probs=106.2
Q ss_pred ccCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcCCCCeEEEEEeCCceEeee--cCc---------------------
Q 007719 323 VFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFS--SSM--------------------- 379 (591)
Q Consensus 323 ~~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~~~d~f~Ii~F~~~~~~~~--~~~--------------------- 379 (591)
..|--++||||+|.+. ..++.++++++..|+.|+++.+|+||+|++.++.+. ...
T Consensus 130 p~pp~~vFvIDvS~~a--~~l~~l~~si~~~L~~Lp~~~~VGlITf~~~v~~y~l~~~~~~~~~vf~G~k~~~~~q~~~m 207 (769)
T 2nut_A 130 QMPLIFLYVVDTCMED--EDLQALKESMQMSLSLLPPTALVGLITFGRMVQVHELGCEGISKSYVFRGTKDLSAKQLQEM 207 (769)
T ss_dssp CCCCEEEEEEECCSCH--HHHHHHHHHHHHHHTTSCTTCEEEEEEESSEEEEEESSCCSSCEEEEEETTSCCCSHHHHHH
T ss_pred CCCCEEEEEEECCccH--HHHHHHHHHHHHHHHhCCCCceEEEEEeCCEEEEEeCCCCCCccceeecCCccccHHHHHHH
Confidence 3566799999999984 578999999999999999999999999999876532 100
Q ss_pred ccCC--------------------------HHHHHHHHHHHhcCCC---------CCCCchHHHHHHHHHhhhcC-CCCc
Q 007719 380 KLAS--------------------------QGTIINATQWLSSLVA---------GGGTNILLPLKQAIKLLSDT-SESI 423 (591)
Q Consensus 380 ~~~~--------------------------~~~~~~a~~~i~~l~~---------~GgT~l~~aL~~a~~~l~~~-~~~~ 423 (591)
...+ .+......+.|+++.. .+.+.++.||+.|..++... ++.-
T Consensus 208 l~v~d~~~~~~~~~~~~~f~~p~~~~lv~~~e~~~~i~~lLe~L~~~~~~~~~~~~~~~a~G~Al~~A~~lL~~~~~~~G 287 (769)
T 2nut_A 208 LGLSKVPVTQATRGPQVQQPPPSNRFLQPVQKIDMNLTDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECTFPNTG 287 (769)
T ss_dssp HC-------------------CCCSSSEEHHHHHHHHHHHHHHCCCCSSCCCTTBCCCCCHHHHHHHHHHHHHHHSCSSC
T ss_pred hCCCCcccccccccccccCCCcccceeeeHHHHHHHHHHHHHhcccccccccCCCCCccchHHHHHHHHHHHhhcccCCC
Confidence 1011 0111112233444433 46789999999999999732 1122
Q ss_pred cEEEEEecCCCCCh---------h-----------h----------HHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHH
Q 007719 424 PLIFLITDGTVGDE---------R-----------G----------ICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQ 473 (591)
Q Consensus 424 ~~IillTDG~~~~~---------~-----------~----------i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~ 473 (591)
-.|++++.|.++.+ . + ..+.+...+.+ .++.+.+|+++. ..++-..|.
T Consensus 288 GrI~~F~sg~pt~GpG~l~~r~~~~~~rs~~d~~ke~~~~~~~a~~fY~~la~~~~~-~gi~VDlF~~~~-~~vdla~l~ 365 (769)
T 2nut_A 288 ARIMMFIGGPATQGPGMVVGDELKTPIRSWHDIDKDNAKYVKKGTKHFEALANRAAT-TGHVIDIYACAL-DQTGLLEMK 365 (769)
T ss_dssp CEEEEEESSCCCSSSSCCSCSBTTSCCCCHHHHHTTCCTTHHHHHHHHHHHHHHHHH-HTCEEEEEEECS-SCCCHHHHT
T ss_pred cEEEEEeCCCCCCCCCCCcCcccccccccccccccchhhhccchHHHHHHHHHHHHH-CCeEEEEEeccC-CccChHHHH
Confidence 36778888876410 0 0 01112222221 134455666553 457889999
Q ss_pred HHHHhCCCEEEEcCCCC
Q 007719 474 ILAQIGRGYYDSAYDPG 490 (591)
Q Consensus 474 ~LA~~~~G~~~~v~~~~ 490 (591)
.|++.|||..++..+..
T Consensus 366 ~l~~~TGG~~~~~~~F~ 382 (769)
T 2nut_A 366 CCPNLTGGYMVMGDSFN 382 (769)
T ss_dssp HHHHHSSCCEEEESCSS
T ss_pred HHhhcCCceEEEcCCCc
Confidence 99999999998877654
No 32
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=98.19 E-value=5e-06 Score=80.18 Aligned_cols=78 Identities=13% Similarity=0.077 Sum_probs=56.7
Q ss_pred CCccEEEEEecCCCCChhhHHHHHHHHHhcCCCCCCeEEEEEcCCC-----CCHHHHHHHHHhCCCEEEEcCCCCchHHH
Q 007719 421 ESIPLIFLITDGTVGDERGICNEIKSYLTNTRSISPRICTFGVGLY-----CNHYFLQILAQIGRGYYDSAYDPGSVDYR 495 (591)
Q Consensus 421 ~~~~~IillTDG~~~~~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~-----~~~~lL~~LA~~~~G~~~~v~~~~~l~~~ 495 (591)
+..+.|||+|||+.+.+...++..+.. .+ .+++||+||+|+. .+...|+.||..|||.|+.++. +++.+.
T Consensus 8 ~~~k~iillTDG~~~~g~~p~~aa~~a-~~---~gi~v~tIGig~~~~~~~~~~~~L~~IA~~tGG~yf~a~~-~~l~~~ 82 (242)
T 3rag_A 8 ATIRQILVITDGCSNIGPDPVEAARRA-HR---HGIVVNVIGIVGRGDAGEQGYQEAHSIADAGGGMCRIVQP-ADISAT 82 (242)
T ss_dssp CCEEEEEEEESSCCCSSSCHHHHHHHH-HH---TTCEEEEEEECCSSSCTTCCCHHHHHHHHHTTSCEEEECG-GGHHHH
T ss_pred CCccEEEEEccCCCCCCCCHHHHHHHH-HH---CCCEEEEEEecCCccccchhHHHHHHHHHhcCCeEEEeeH-HHHHHH
Confidence 567899999999987555555444433 22 3599999999753 2357899999999999999855 777766
Q ss_pred HHHHHHHh
Q 007719 496 IRRFFTAA 503 (591)
Q Consensus 496 ~~~~~~~~ 503 (591)
++.+..+.
T Consensus 83 ~~~~t~~~ 90 (242)
T 3rag_A 83 AQMMTHQT 90 (242)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555544
No 33
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=98.18 E-value=4.5e-05 Score=87.16 Aligned_cols=222 Identities=14% Similarity=0.105 Sum_probs=136.4
Q ss_pred CccCceEEEEEeCCcCCCc-chHHHHHHHHHHHHHhcCC---CCeEEEEEeCCceEeee--cCcc---------------
Q 007719 322 KVFRKDVVFLVDVSGSMQG-VLLEQTKNALSASLSKLNP---QDSFNIIAFNGETHLFS--SSMK--------------- 380 (591)
Q Consensus 322 ~~~~~~ivfviD~SgSM~g-~~i~~ak~al~~~l~~L~~---~d~f~Ii~F~~~~~~~~--~~~~--------------- 380 (591)
...|--++||||+|.++-. .-++.+++++...|+.|++ +.+|+||+|++..+.+. ....
T Consensus 184 ~p~pp~yvFvIDvs~~av~~g~l~~~~~si~~~L~~Lp~~~~~~~VGlITfd~~V~~~~l~~~~~g~k~~~~q~~mlvv~ 263 (810)
T 1pcx_A 184 QPPPATYCFLIDVSQSSIKSGLLATTINTLLQNLDSIPNHDERTRISILCVDNAIHYFKIPLDSENNEESADQINMMDIA 263 (810)
T ss_dssp CCCCCEEEEEEECSHHHHHHTHHHHHHHHHHHHTTTSCCTTSCCEEEEEEESSSEEEEECCCGGGC-------CEEECCC
T ss_pred CCCCcEEEEEEECChHHHhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEecCccccCccccccchhhcccc
Confidence 3456789999999988632 2478899999999999986 68999999999976541 1000
Q ss_pred -----------------cCCHHHHHHHHHHHhcCC---CCCCCchHHHHHHHHHhhhcCCCCccEEEEEecCCCCChh--
Q 007719 381 -----------------LASQGTIINATQWLSSLV---AGGGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVGDER-- 438 (591)
Q Consensus 381 -----------------~~~~~~~~~a~~~i~~l~---~~GgT~l~~aL~~a~~~l~~~~~~~~~IillTDG~~~~~~-- 438 (591)
.-....+..+++.|..+- ..+.+.++.||+.|..++... + -.|+++++|.++.+.
T Consensus 264 dl~d~f~P~~~~~Lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~a~G~AL~~A~~lL~~~-G--GrI~~F~sg~pt~GpG~ 340 (810)
T 1pcx_A 264 DLEEPFLPRPNSMVVSLKACRQNIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGGV-G--GKIIVVSGTLPNLGIGK 340 (810)
T ss_dssp CTTCC-----TTTSEETTTTHHHHHHHHHHHHHHTTTCCCCCCCHHHHHHHHHHHHTTT-C--EEEEEEESSCCCSSTTC
T ss_pred ccccccCCCcccccccHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhc-C--CEEEEEecCCCCCCCCc
Confidence 011345566666666432 247889999999999998753 2 368889998765210
Q ss_pred ------------------------hHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHhCCCEEEEcCCCCch--
Q 007719 439 ------------------------GICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYYDSAYDPGSV-- 492 (591)
Q Consensus 439 ------------------------~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~LA~~~~G~~~~v~~~~~l-- 492 (591)
...+.+...+.+ .++.+.+|+++ ++.++-..|..+++.|||..++..+...-
T Consensus 341 l~~r~~~~~~~~~ke~~~l~~~a~~fY~~la~~~~~-~gi~VDlF~~s-~~~~dla~l~~l~~~TGG~v~~y~~F~~~~~ 418 (810)
T 1pcx_A 341 LQRRNESGVVNTSKETAQLLSCQDSFYKNFTIDCSK-VQITVDLFLAS-EDYMDVASLSNLSRFTAGQTHFYPGFSGKNP 418 (810)
T ss_dssp CCC--------------------CCHHHHHHHHHHH-TTEEEEEEEEE-SSCCCHHHHHHHHHTTTCCEEEEETCCTTSH
T ss_pred ccccccccccCcccchhhhcccchHHHHHHHHHHHH-CCeEEEEEEcc-CCccChHHHHHHHhcCCcEEEEcCCCcchhh
Confidence 001122221111 23556777766 45678999999999999998877655321
Q ss_pred HH--HHHH-HHHHhccceEEeE--EEEecCCCcceeeeCC---------CCCCcCCCCeEEEEEEEeCCC
Q 007719 493 DY--RIRR-FFTAASSVFLTNM--TLETSKHLNSLELFPS---------HIPDFCLECPLIVSGRYSGNF 548 (591)
Q Consensus 493 ~~--~~~~-~~~~~~~p~~~~v--~l~~~~~~~~~~v~P~---------~i~~l~~g~~l~v~g~~~~~~ 548 (591)
.+ ++.+ +...+..+..-+. ++....++.....+.. .++.+-.++.+.+.-.+.++.
T Consensus 419 ~d~~~f~~dl~~~l~~~~gf~a~mrVR~S~gl~v~~~~G~~~~~~~~~~~l~~~~~d~s~~v~f~~~~~l 488 (810)
T 1pcx_A 419 NDIVKFSTEFAKHISMDFCMETVMRARGSTGLRMSRFYGHFFNRSSDLCAFSTMPRDQSYLFEVNVDESI 488 (810)
T ss_dssp HHHHHHHHHHHHHHHCCCCEEEEEEEEECTTEEEEEEESSSBCSSSSEEEESSCCSSCCEEEEEEECSCC
T ss_pred HHHHHHHHHHHHHhhhhcceeEEEEEEcCCCeEEEEeecCccccCcCceEeecCCCCCEEEEEEEeccCC
Confidence 11 2322 2222223333333 3333333322222211 245667777888887777654
No 34
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Probab=98.05 E-value=0.00082 Score=76.42 Aligned_cols=164 Identities=17% Similarity=0.097 Sum_probs=106.7
Q ss_pred ccCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcCCCCeEEEEEeCCceEeeecCc------------ccCCH------
Q 007719 323 VFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLNPQDSFNIIAFNGETHLFSSSM------------KLASQ------ 384 (591)
Q Consensus 323 ~~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~~~d~f~Ii~F~~~~~~~~~~~------------~~~~~------ 384 (591)
..|--++||||+|.+. ..++.+++++...|+.|+++.+|+||+|++..+.+.-.. ..++.
T Consensus 119 ~~pp~~vFvIDvs~~~--~~l~~l~~sl~~~L~~Lp~~~~VGlITf~~~V~~y~l~~~~~~~~~V~~g~k~~~~~q~~~~ 196 (768)
T 1m2o_A 119 TVPPIFFFVVDLTSET--ENLDSLKESIITSLSLLPPNALIGLITYGNVVQLHDLSSETIDRCNVFRGDREYQLEALTEM 196 (768)
T ss_dssp CSCCEEEEEEECCSCH--HHHHHHHHHHHHHHHTSCTTCEEEEEEESSEEEECCCSSSSSEEEEEEETTSCCCHHHHHHH
T ss_pred CCCCEEEEEEECCcCH--HHHHHHHHHHHHHHHhCCCCCEEEEEEECCEEEEEECCCCCCcceeeecCCccccHHHHHHH
Confidence 3567799999999886 468999999999999999999999999999876532110 00000
Q ss_pred ------------------------------------HHHHHHHHHHhcCCC---------CCCCchHHHHHHHHHhhhcC
Q 007719 385 ------------------------------------GTIINATQWLSSLVA---------GGGTNILLPLKQAIKLLSDT 419 (591)
Q Consensus 385 ------------------------------------~~~~~a~~~i~~l~~---------~GgT~l~~aL~~a~~~l~~~ 419 (591)
+......+.|+++.. .+.+.++.||+.|..++...
T Consensus 197 l~~l~~~~~~~~~~~~~~~~f~p~~~~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~ 276 (768)
T 1m2o_A 197 LTGQKPTGPGGAASHLPNAMNKVTPFSLNRFFLPLEQVEFKLNQLLENLSPDQWSVPAGHRPLRATGSALNIASLLLQGC 276 (768)
T ss_dssp HHSCCCC---------------CCSSSGGGGSEEHHHHHHHHHHHHHTCCCSCSCCCTTBCCCCCHHHHHHHHHHHHHHH
T ss_pred HhhccccccCCccccccccccccccCCccceeeeHHHHHHHHHHHHHhccccccccCCCCCCcccHHHHHHHHHHHHhhc
Confidence 011112233444433 35568999999999998732
Q ss_pred -CCCccEEEEEecCCCCCh---------h-------h--------------HHHHHHHHHhcCCCCCCeEEEEEcCCCCC
Q 007719 420 -SESIPLIFLITDGTVGDE---------R-------G--------------ICNEIKSYLTNTRSISPRICTFGVGLYCN 468 (591)
Q Consensus 420 -~~~~~~IillTDG~~~~~---------~-------~--------------i~~~v~~~~~~~~~~~~ri~t~GiG~~~~ 468 (591)
++..-.|++++.|-++.+ . + ..+.+...+.+ .++.+.+|+++ .+.++
T Consensus 277 ~~~~GGrI~~F~sg~pt~GpG~l~~r~~~~~~rs~~d~~k~~~~~~~~a~~fY~~la~~~~~-~gi~VDlF~~~-~~~~d 354 (768)
T 1m2o_A 277 YKNIPARIILFASGPGTVAPGLIVNSELKDPLRSHHDIDSDHAQHYKKACKFYNQIAQRVAA-NGHTVDIFAGC-YDQIG 354 (768)
T ss_dssp CTTSCCEEEEEESSCCCSSSSCCSCSBTTSCCCCHHHHHHTCCTTHHHHHHHHHHHHHHHHH-HTCEEEEEEEC-SSCCS
T ss_pred cCCCCcEEEEEeCCCCCCCCccccccccccccccccccccchhhhcCchHHHHHHHHHHHHH-CCeEEEEEEcc-CCccC
Confidence 122246888888876410 0 0 01111111111 23556677765 45678
Q ss_pred HHHHHHHHHhCCCEEEEcCCCC
Q 007719 469 HYFLQILAQIGRGYYDSAYDPG 490 (591)
Q Consensus 469 ~~lL~~LA~~~~G~~~~v~~~~ 490 (591)
-..|..+++.|||..++..+..
T Consensus 355 la~l~~l~~~TGG~v~~y~~f~ 376 (768)
T 1m2o_A 355 MSEMKQLTDSTGGVLLLTDAFS 376 (768)
T ss_dssp HHHHHHHHHHHTCCEEEESCTT
T ss_pred hHHHhhHhhcCCceEEEcCCCc
Confidence 8999999999999988876654
No 35
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus}
Probab=98.01 E-value=2.1e-05 Score=74.67 Aligned_cols=107 Identities=19% Similarity=0.139 Sum_probs=72.3
Q ss_pred cCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhc---CCCCeEEEEEeCCceEeeecCcccCCHHHHHHHHHHHhcCCCC
Q 007719 324 FRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKL---NPQDSFNIIAFNGETHLFSSSMKLASQGTIINATQWLSSLVAG 400 (591)
Q Consensus 324 ~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L---~~~d~f~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~~~ 400 (591)
.|.|++||+|.|+||.. .++.+|+.+..+.+.| ..+-||++.+|.+.... . ..+. .++..+..+.|+++...
T Consensus 2 ~pvDl~fl~D~S~SM~~-di~~lk~~~~~l~~~l~~~~~~~r~Gfg~f~Dk~~~--~-~l~l-T~d~~~F~~~v~~~~vs 76 (212)
T 2iue_A 2 NSVDLYFLMGLSGSAQG-HLSNVQTLGSDLLKALNEISRSGRIGFGSIVNMTFQ--H-ILKL-TADSSQFQRELRKQLVS 76 (212)
T ss_dssp CCEEEEEEEECCGGGTT-THHHHHHHHHHHHHHHHHHCSCEEEEEEEESSSCEE--E-EEEE-ESCHHHHHHHHHTCCCC
T ss_pred CceEEEEEEeCCCcchh-HHHHHHHHHHHHHHHHHhhCcCceEEEEEEEcCcce--e-cCCc-CCCHHHHHHHHhhcccc
Confidence 37899999999999975 6899999888776655 55789999999887321 1 1111 23455666777888777
Q ss_pred CCCc----hHHHHHHHHH---hhhcCCCCccEEEEEecCCCCC
Q 007719 401 GGTN----ILLPLKQAIK---LLSDTSESIPLIFLITDGTVGD 436 (591)
Q Consensus 401 GgT~----l~~aL~~a~~---~l~~~~~~~~~IillTDG~~~~ 436 (591)
||-+ -..||..|+. .+.=++ ..|.+||+||+.+..
T Consensus 77 g~~D~PE~g~dal~qa~~c~~~i~Wr~-a~rllvl~TDa~~H~ 118 (212)
T 2iue_A 77 GKLATPKGQLDAVVQVAICLGEIGWRN-GTRFLVLVTDNDFHL 118 (212)
T ss_dssp CCSSSSBCHHHHHHHHHHCHHHHTCCS-SEEEEEEECSSCBCC
T ss_pred CCCCCCchHHHHHHHHHHhhhhcccCC-ccEEEEEECcCCccc
Confidence 6432 2345555542 111123 678999999998753
No 36
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=98.00 E-value=0.00034 Score=80.63 Aligned_cols=174 Identities=17% Similarity=0.149 Sum_probs=114.3
Q ss_pred EEecCCCCCCCccCceEEEEEeCCcCCCc-chHHHHHHHHHHHHHhcCC---CCeEEEEEeCCceEeee--cC-------
Q 007719 312 YLFPGKSQSRKVFRKDVVFLVDVSGSMQG-VLLEQTKNALSASLSKLNP---QDSFNIIAFNGETHLFS--SS------- 378 (591)
Q Consensus 312 ~~~P~~~~~~~~~~~~ivfviD~SgSM~g-~~i~~ak~al~~~l~~L~~---~d~f~Ii~F~~~~~~~~--~~------- 378 (591)
++.|.........|--++||||+|.+.-. .-++.+++++...|+.|++ +.+|+||+|++..+.+. ..
T Consensus 290 yi~p~ey~~r~p~ppvyvFvIDvS~~av~~g~l~~l~~sI~~~L~~LP~~~~~~~VGlITFds~Vh~y~l~~~~~g~k~~ 369 (926)
T 1m2v_B 290 YMAPKEYTLRQPPPATYCFLIDVSQSSIKSGLLATTINTLLQNLDSIPNHDERTRISILCVDNAIHYFKIPLDSENNEES 369 (926)
T ss_dssp EECCGGGCSSCCCCCBEEEEEECSHHHHHSCHHHHHHHHHHHTTTTSCCTTSCCEECEEEESSSEEEEECCCC-------
T ss_pred EEcChhhccCCCCCcEEEEEEECCHHHHhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEecCCcccCCccc
Confidence 34444322233456789999999987632 2478899999999999986 57999999999876541 10
Q ss_pred -----------------------cc--cCCHHHHHHHHHHHhcCC---CCCCCchHHHHHHHHHhhhcCCCCccEEEEEe
Q 007719 379 -----------------------MK--LASQGTIINATQWLSSLV---AGGGTNILLPLKQAIKLLSDTSESIPLIFLIT 430 (591)
Q Consensus 379 -----------------------~~--~~~~~~~~~a~~~i~~l~---~~GgT~l~~aL~~a~~~l~~~~~~~~~IillT 430 (591)
++ .-..+.+..+++.|..+- ....+.++.||+.|..++... + -.|++++
T Consensus 370 ~~q~qmlvvsdl~d~f~P~~~~~Lv~l~e~~~~I~~lLe~L~~~~~~~~~~~~~~G~AL~aA~~lL~~~-G--GrI~~F~ 446 (926)
T 1m2v_B 370 ADQINMMDIADLEEPFLPRPNSMVVSLKACRQNIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGGV-G--GKIIVVS 446 (926)
T ss_dssp --CCEEEEECCCSSCCCSCSSSSSEETTTTHHHHHHHHHHHHHHTSSCCCCCCCHHHHHHHHHHHHTTT-C--EEEEEEE
T ss_pred ccchhhccccccccccCCCcccccccHHHHHHHHHHHHHhhhhhhcCCCCCCccHHHHHHHHHHHHHhh-C--CEEEEEe
Confidence 00 012456666666666432 247788999999999998753 2 3678888
Q ss_pred cCCCCCh-----------------h---------hHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHhCCCEEE
Q 007719 431 DGTVGDE-----------------R---------GICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYYD 484 (591)
Q Consensus 431 DG~~~~~-----------------~---------~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~LA~~~~G~~~ 484 (591)
.|.++.+ + ...+.+...+.+ .++.+.+|+++ .+.++-..|..|++.|||..+
T Consensus 447 sg~Pt~GpG~l~~re~~~~~~~~ke~~~ll~~a~~FYk~LA~~~~~-~gisVDlF~~s-~~~vdla~l~~l~~~TGG~v~ 524 (926)
T 1m2v_B 447 GTLPNLGIGKLQRRNESGVVNTSKETAQLLSCQDSFYKNFTIDCSK-VQITVDLFLAS-EDYMDVASLSNLSRFTAGQTH 524 (926)
T ss_dssp SSCCCSSTTCCCCCCC----CCTTHHHHHTSCSSTHHHHHHHHHHH-HTEEEEEEEEE-SSCCCHHHHHHHHHTTTCCEE
T ss_pred cCCCCCCCCcccccccccccCcccchhhhccchHHHHHHHHHHHHH-cCeEEEEEEcc-CCCcChHHHHHHHhcCCceEE
Confidence 8776410 0 011222222211 13557778776 456799999999999999988
Q ss_pred EcCCCC
Q 007719 485 SAYDPG 490 (591)
Q Consensus 485 ~v~~~~ 490 (591)
+..+..
T Consensus 525 ~y~~F~ 530 (926)
T 1m2v_B 525 FYPGFS 530 (926)
T ss_dssp EEESCC
T ss_pred EcCCCc
Confidence 776543
No 37
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=97.91 E-value=0.00018 Score=80.39 Aligned_cols=188 Identities=13% Similarity=0.064 Sum_probs=113.1
Q ss_pred ceEEEEEecCCCCCCCccCceEEEEEeCCcCCCcchHHHHHHHHHHHHHh---cCCCCeEEEEEeCCceEe-ee---c-C
Q 007719 307 QIFCLYLFPGKSQSRKVFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSK---LNPQDSFNIIAFNGETHL-FS---S-S 378 (591)
Q Consensus 307 ~~f~~~~~P~~~~~~~~~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~---L~~~d~f~Ii~F~~~~~~-~~---~-~ 378 (591)
..|.+.+.+.. ..|.|++||+|.|+||. ..|+.+|+....+++. +..+-||++.+|.+.... +. + .
T Consensus 98 ~~f~~~~~~~~-----~~pvDly~LmD~S~SM~-ddi~~lk~l~~~l~~~l~~~t~~~r~Gfgsf~Dk~~~P~~~~~p~~ 171 (690)
T 3fcs_B 98 KNFSIQVRQVE-----DYPVDIYYLMDLSYSMK-DDLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDKPVSPYMYISPPE 171 (690)
T ss_dssp EEEEEEEECCB-----TCCEEEEEEEECSGGGH-HHHHHTTTTTHHHHHHHHHHCSCEEEEEEEECCCSSTTTSCCCSTT
T ss_pred EEEEEEEeccC-----CCCccEEEEecCCcchH-HHHHHHHHHHHHHHHHHHhhCcCceEEeEEeeccccCCccccChhh
Confidence 35666666543 35799999999999997 4788888777666544 456789999999885421 00 0 0
Q ss_pred ---------------------cccCCHHHHHHHHHHHhcCCCCCCCc----hHHHHHHHH---HhhhcCCCCccEEEEEe
Q 007719 379 ---------------------MKLASQGTIINATQWLSSLVAGGGTN----ILLPLKQAI---KLLSDTSESIPLIFLIT 430 (591)
Q Consensus 379 ---------------------~~~~~~~~~~~a~~~i~~l~~~GgT~----l~~aL~~a~---~~l~~~~~~~~~IillT 430 (591)
..+. .++..+..+.|+.+...|+-+ -.+||..|+ +.+.=+++..|.|||+|
T Consensus 172 ~~~~pc~~~~~~c~~~f~f~~~l~l-t~~~~~f~~~v~~~~isgn~D~PE~g~dAl~qa~~c~~~igWr~~a~rllv~~T 250 (690)
T 3fcs_B 172 ALENPCYDMKTTCLPMFGYKHVLTL-TDQVTRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGWRNDASHLLVFTT 250 (690)
T ss_dssp TTTCTTSSSSSCCCCCCSEEEEEEE-ESCHHHHHHHHTTCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCSSSEEEEEEEE
T ss_pred hccCCCcCCCCCCCCCccceeeccc-CCCHHHHHHHhhceeccCCCCCCchHHHHHHHHhhcccccCCCCCceEEEEEEC
Confidence 0011 245667777888877776633 245555554 22222345678999999
Q ss_pred cCCCCC---h------------------------h----hHHHHHHHHHhcCCCCCC-eEEEEEcCCCCCHHHHHHHHHh
Q 007719 431 DGTVGD---E------------------------R----GICNEIKSYLTNTRSISP-RICTFGVGLYCNHYFLQILAQI 478 (591)
Q Consensus 431 DG~~~~---~------------------------~----~i~~~v~~~~~~~~~~~~-ri~t~GiG~~~~~~lL~~LA~~ 478 (591)
|..... . . ..+..+.+.+.+. ++ .||++-- . ...+.+.|+..
T Consensus 251 Da~~H~agDg~l~gi~~pnd~~chl~~~~~y~~s~~~DypSi~ql~~~l~~~---~i~~ifavt~-~--~~~~y~~l~~~ 324 (690)
T 3fcs_B 251 DAKTHIALDGRLAGIVQPNDGQCHVGSDNHYSASTTMDYPSLGLMTEKLSQK---NINLIFAVTE-N--VVNLYQNYSEL 324 (690)
T ss_dssp SSCBCCTTGGGGGTCCSCCCCCCCBCTTCBBGGGGTSCCCCHHHHHHHHHHT---TCEEEEEEEG-G--GHHHHHHHHHH
T ss_pred CCccccCCCccccceecCCCcceeecCCCccccccccCCCCHHHHHHHHHHc---CCeEEEEEeC-C--chhhHHHHHhh
Confidence 987541 0 0 0134444444432 24 4666632 2 33455666655
Q ss_pred CCCE-EEEc-CCCCchHHHHHHHHHHhccce
Q 007719 479 GRGY-YDSA-YDPGSVDYRIRRFFTAASSVF 507 (591)
Q Consensus 479 ~~G~-~~~v-~~~~~l~~~~~~~~~~~~~p~ 507 (591)
-.|. ...+ .+...+.+.+...+.++.+.+
T Consensus 325 i~~s~v~~l~~dSsni~~li~~~y~~i~s~v 355 (690)
T 3fcs_B 325 IPGTTVGVLSMDSSNVLQLIVDAYGKIRSKV 355 (690)
T ss_dssp STTCEEEEECTTCTTHHHHHHHHHHHHTTCE
T ss_pred cCCceeeeeccccHHHHHHHHHHHHhhhcce
Confidence 5444 3333 445668888888888877544
No 38
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=97.73 E-value=0.0031 Score=71.34 Aligned_cols=164 Identities=14% Similarity=0.157 Sum_probs=108.3
Q ss_pred CccCceEEEEEeCCcC-CCcchHHHHHHHHHHHHHhcCCCC--eEEEEEeCCceEeee--cC------------------
Q 007719 322 KVFRKDVVFLVDVSGS-MQGVLLEQTKNALSASLSKLNPQD--SFNIIAFNGETHLFS--SS------------------ 378 (591)
Q Consensus 322 ~~~~~~ivfviD~SgS-M~g~~i~~ak~al~~~l~~L~~~d--~f~Ii~F~~~~~~~~--~~------------------ 378 (591)
.+.|--++||||+|-. +...-++.+++++...|+.|+++. +|++|+|++..+.+. +.
T Consensus 157 ~p~pp~yvFvIDvs~~a~~~g~l~~~~~sl~~~L~~lp~~~~~~VG~ITfd~~vh~y~l~~~~~~~qmlvv~dl~d~f~P 236 (751)
T 3eh1_A 157 PPQPAVYLFVLDVSHNAVEAGYLTILCQSLLENLDKLPGDSRTRIGFMTFDSTIHFYNLQEGLSQPQMLIVSDIDDVFLP 236 (751)
T ss_dssp SCCCCEEEEEEECSHHHHHHTHHHHHHHHHHHHTTTSSCCTTCEEEEEEESSSEEEEECCTTCSSCEEEEESCTTCTTSC
T ss_pred CCCCcEEEEEEEccHhhhhhhHHHHHHHHHHHHHHhcCCCcCcEEEEEEeCCEEEEEECCCCcccceeeccccccccCCC
Confidence 3467789999999853 333468889999999999998755 899999999865321 00
Q ss_pred -----cc--cCCHHHHHHHHHHHhcCCCC---CCCchHHHHHHHHHhhhcCCCCccEEEEEecCCCCCh-----------
Q 007719 379 -----MK--LASQGTIINATQWLSSLVAG---GGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVGDE----------- 437 (591)
Q Consensus 379 -----~~--~~~~~~~~~a~~~i~~l~~~---GgT~l~~aL~~a~~~l~~~~~~~~~IillTDG~~~~~----------- 437 (591)
++ .-....+..+++.|..+-.. ..+.++.||+.|..++... + -.|++++.|-++.+
T Consensus 237 ~~~~~lv~l~e~~~~i~~lL~~Lp~~~~~~~~~~~~~G~AL~aA~~ll~~~-G--GrI~~F~sg~pt~GpG~l~~r~~~~ 313 (751)
T 3eh1_A 237 TPDSLLVNLYESKELIKDLLNALPNMFTNTRETHSALGPALQAAFKLMSPT-G--GRVSVFQTQLPSLGAGLLQSREDPN 313 (751)
T ss_dssp CGGGTSEETTTTHHHHHHHHHHGGGTSTTCSCCCCCHHHHHHHHHHHHTTT-C--EEEEEEECSCCCSSTTCCCCCCCSC
T ss_pred ChhhhcccHHHHHHHHHHHHHhhhHhhcCCCCCccchHHHHHHHHHHhhcC-C--CEEEEEecCCCCCCCCccccccccc
Confidence 01 12245666777666644332 4577999999999998652 2 35677777765411
Q ss_pred --------------hhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHhCCCEEEEcCCCC
Q 007719 438 --------------RGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYYDSAYDPG 490 (591)
Q Consensus 438 --------------~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~LA~~~~G~~~~v~~~~ 490 (591)
....+.+.....+ .++.+.+|.++ .+.++-..|..+++.|||..++..+..
T Consensus 314 ~~~~~ke~~~~~~a~~fY~~la~~~~~-~~i~VDlF~~s-~~~~dlatl~~l~~~TGG~v~~y~~F~ 378 (751)
T 3eh1_A 314 QRSSTKVVQHLGPATDFYKKLALDCSG-QQTAVDLFLLS-SQYSDLASLACMSKYSAGCIYYYPSFH 378 (751)
T ss_dssp GGGGSSSCTTCSCSCSHHHHHHHHHHH-TTEEEEEEECC-SSCCCHHHHTHHHHTTTCCEEECTTCB
T ss_pred cCCCchhhhhhcchHHHHHHHHHHHHh-cCceEEEEEcc-CcccChHhHHHHHhhcCceEEEeCCcc
Confidence 0112333332222 23445666654 356788999999999999998876543
No 39
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Probab=97.56 E-value=0.0015 Score=68.99 Aligned_cols=189 Identities=13% Similarity=0.057 Sum_probs=113.8
Q ss_pred ceEEEEEecCCCCCCCccCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcC---CCCeEEEEEeCCceEe-ee------
Q 007719 307 QIFCLYLFPGKSQSRKVFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLN---PQDSFNIIAFNGETHL-FS------ 376 (591)
Q Consensus 307 ~~f~~~~~P~~~~~~~~~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~---~~d~f~Ii~F~~~~~~-~~------ 376 (591)
..|.+.+.+.. ..|.|++||+|.|+||. ..++.+|+....+++.|. .+-|+++.+|-+.... |.
T Consensus 98 ~~f~v~~~~~~-----~ypvDLy~LmDlS~SM~-ddl~~lk~lg~~L~~~l~~~t~~~riGfgsFvDk~v~P~~~~~p~~ 171 (472)
T 3t3p_B 98 KNFSIQVRQVE-----DYPVDIYYLMDLSYSMK-DDLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDKPVSPYMYISPPE 171 (472)
T ss_dssp EEEEEEEECCS-----SCCEEEEEEEECSGGGH-HHHHHTTTHHHHHHHHHTTTCSCEEEEEEEECCCSSTTTSCCCSHH
T ss_pred EEEEEEeecCC-----CCCceEEEEEccCcchH-HHHHHHHHHHHHHHHHHHhcCcCcEEEEEEeeccccCccccCChhh
Confidence 34666666543 36899999999999997 478888888877766554 5779999999886310 00
Q ss_pred ----cC---------------cccCCHHHHHHHHHHHhcCCCCCCCc----hHHHHHHHH---HhhhcCCCCccEEEEEe
Q 007719 377 ----SS---------------MKLASQGTIINATQWLSSLVAGGGTN----ILLPLKQAI---KLLSDTSESIPLIFLIT 430 (591)
Q Consensus 377 ----~~---------------~~~~~~~~~~~a~~~i~~l~~~GgT~----l~~aL~~a~---~~l~~~~~~~~~IillT 430 (591)
|. ..+. .++..+..+.|++....|+-+ -.+||..|+ +.+.=+.+..+.+||+|
T Consensus 172 ~l~nPc~~~~~~c~p~f~fr~~l~L-T~d~~~F~~~V~~~~iSGn~D~PEgg~dAl~qaavC~~~igWR~~a~rllV~~T 250 (472)
T 3t3p_B 172 ALENPCYDMKTTCLPMFGYKHVLTL-TDQVTRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGWRNDASHLLVFTT 250 (472)
T ss_dssp HHHCTTTTTTSCCCCCCSEEEEEEE-ESCHHHHHHHHHHCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCSSSEEEEEEEE
T ss_pred hhcCCCcccccCCCCCcceeEeecc-CCCHHHHHHHHhhccccCCCCCCchHHHHHHHHhcchhhcCCCCCceEEEEEEC
Confidence 00 0111 235666777788777776643 244554444 22221235678999999
Q ss_pred cCCCCC--------------------hh-----------hHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHhC
Q 007719 431 DGTVGD--------------------ER-----------GICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIG 479 (591)
Q Consensus 431 DG~~~~--------------------~~-----------~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~LA~~~ 479 (591)
|.-..- .. ..+..+.+.+.+.+ -..||++-- ......+.|+..-
T Consensus 251 Da~~H~agDgkL~GIv~pnDg~CHL~~~~~Y~~s~~~DYPSv~ql~~~l~e~n--I~~IFAVt~---~~~~~Y~~L~~~i 325 (472)
T 3t3p_B 251 DAKTHIALDGRLAGIVQPNDGQCHVGSDNHYSASTTMDYPSLGLMTEKLSQKN--INLIFAVTE---NVVNLYQNYSELI 325 (472)
T ss_dssp SSCBCCTTGGGGGTCCCCCCCCCCBCTTCBBTTTTTSCCCCHHHHHHHHHHTT--CEEEEEECG---GGHHHHHHHHHTS
T ss_pred CCCcCcCCCccccceecCCCCceEECCCCcccccccCCCCCHHHHHHHHHhcC--ccEEEEEec---cchhHHHHHHHhC
Confidence 987430 00 01344444444321 245777722 2344567777766
Q ss_pred CCEEE-Ec-CCCCchHHHHHHHHHHhccce
Q 007719 480 RGYYD-SA-YDPGSVDYRIRRFFTAASSVF 507 (591)
Q Consensus 480 ~G~~~-~v-~~~~~l~~~~~~~~~~~~~p~ 507 (591)
.|... .+ .+.+.+-+.+...+.++.+.+
T Consensus 326 p~s~vg~L~~dSsNiv~LI~~aY~~i~s~V 355 (472)
T 3t3p_B 326 PGTTVGVLSMDSSNVLQLIVDAYGKIRSKV 355 (472)
T ss_dssp TTCEEEECCTTSTTHHHHHHHHHHHHTTCE
T ss_pred CCceeeeccccchhHHHHHHHHHHHhheEE
Confidence 55443 33 445678888888888887654
No 40
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=97.53 E-value=0.0088 Score=67.84 Aligned_cols=224 Identities=13% Similarity=0.154 Sum_probs=133.1
Q ss_pred CccCceEEEEEeCCcC-CCcchHHHHHHHHHHHHHhcCCC-------CeEEEEEeCCceEeee-----------------
Q 007719 322 KVFRKDVVFLVDVSGS-MQGVLLEQTKNALSASLSKLNPQ-------DSFNIIAFNGETHLFS----------------- 376 (591)
Q Consensus 322 ~~~~~~ivfviD~SgS-M~g~~i~~ak~al~~~l~~L~~~-------d~f~Ii~F~~~~~~~~----------------- 376 (591)
.+.|--++||||+|-. ....-++.++++++..|+.|+++ .+|++|+|++..+.+.
T Consensus 174 ~p~pp~y~FvIDvs~~av~sg~l~~~~~sl~~~L~~lP~~~~~~~~~~~VG~ITfd~~vh~y~l~~~~~q~q~~vv~d~~ 253 (770)
T 3efo_B 174 PPNPPAFIFMIDVSYSNIKNGLVKLICEELKTMLEKIPKEEQEETSAIRVGFITYNKVLHFFNVKSNLAQPQMMVVTDVG 253 (770)
T ss_dssp CCCCCEEEEEEECSHHHHHTTHHHHHHHHHHHHGGGCCCCTTSSSCSCEEEEEEESSSEEEEECCTTCSSCEEEEECCTT
T ss_pred CCCCcEEEEEEEcchhhccchHHHHHHHHHHHHHHhCCccccccCccceEEEEEeCCEEEEEeCCCcccCceEEEecccc
Confidence 3456789999999864 44447899999999999999875 6999999999865321
Q ss_pred ----c----Cccc--CCHHHHHHHHHHHhcC---CCCCCCchHHHHHHHHHhhhcCCCCccEEEEEecCCCC-C-h----
Q 007719 377 ----S----SMKL--ASQGTIINATQWLSSL---VAGGGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVG-D-E---- 437 (591)
Q Consensus 377 ----~----~~~~--~~~~~~~~a~~~i~~l---~~~GgT~l~~aL~~a~~~l~~~~~~~~~IillTDG~~~-~-~---- 437 (591)
| .+++ -....+..+++.|..+ ....+|.++.||+.|+..+...... -.|++++.|.++ . .
T Consensus 254 d~f~P~~~~~Lv~l~e~~~~i~~lL~~L~~~~~~~~~~~t~~g~al~aa~~~l~~~~~G-GkI~~F~s~lP~t~GpG~l~ 332 (770)
T 3efo_B 254 EVFVPLLDGFLVNYQESQSVIHNLLDQIPDMFADSNENETVFAPVIQAGMEALKAADCP-GKLFIFHSSLPTAEAPGKLK 332 (770)
T ss_dssp SCCCCCSSSSSBCTTTTHHHHHHHHHHHHHHHHTCCCCCCCCHHHHHHHHHHHHHHTCC-EEEEEEECSCCCSSSTTCCC
T ss_pred cccCCCccceeeeHHHHHHHHHHHHHhhHhhccCCCCCcchHHHHHHHHHHHhccCCCC-cEEEEEecCCCCcCCCcccc
Confidence 0 0011 1235566666666533 2346788999999999888642222 256666666443 1 0
Q ss_pred --------------------hhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHhCCCEEEEcCCCCc--hHHH
Q 007719 438 --------------------RGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYYDSAYDPGS--VDYR 495 (591)
Q Consensus 438 --------------------~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~LA~~~~G~~~~v~~~~~--l~~~ 495 (591)
....+.+.....+ .++.+.+|+++ ...++-..|..+++.|||..++..+... -.++
T Consensus 333 ~r~~~~~~~t~ke~~~~~~a~~fY~~lA~~~~~-~~i~VDlF~~s-~~~vdlatl~~l~~~TGG~v~~y~~F~~~~~~~~ 410 (770)
T 3efo_B 333 NRDDKKLVNTDKEKILFQPQTNVYDSLAKDCVA-HGCSVTLFLFP-SQYVDVASLGLVPQLTGGTLYKYNNFQMHLDRQQ 410 (770)
T ss_dssp CCCCCCCSSCSCGGGGGSCSSSHHHHHHHHHHH-TTEEEEEEECC-SSCCCHHHHTHHHHHTTCCEEECTTCCHHHHHHH
T ss_pred ccccccccCCcchhhhhcchHHHHHHHHHHHHH-cCeEEEEEEec-CCccChHHHHHHHhhcCceEEEecCCcchhHHHH
Confidence 0122333332222 23456676654 3567889999999999999988776542 2334
Q ss_pred HHHHHHHh-ccceEEeE--EEEecCCCcceeeeCC---------CCCCcCCCCeEEEEEEEeCCC
Q 007719 496 IRRFFTAA-SSVFLTNM--TLETSKHLNSLELFPS---------HIPDFCLECPLIVSGRYSGNF 548 (591)
Q Consensus 496 ~~~~~~~~-~~p~~~~v--~l~~~~~~~~~~v~P~---------~i~~l~~g~~l~v~g~~~~~~ 548 (591)
+.+.+.+. ..+..-+. ++...+++.....+.. .++.+-..+.+.+.-++.++.
T Consensus 411 f~~dl~~~l~~~~gf~a~mrVR~S~gl~v~~~~G~~~~~~t~~~~l~~~~~d~s~~v~f~~~~~l 475 (770)
T 3efo_B 411 FLNDLRNDIEKKIGFDAIMRVRTSTGFRATDFFGGILMNNTTDVEMAAIDCDKAVTVEFKHDDKL 475 (770)
T ss_dssp HHHHHHHHHHSCEEEEEEEEEEECTTEEEEEEESSCBCSSSSCEEEEEEESSCCEEEEEEESSCC
T ss_pred HHHHHHHhhhhceeeeEEEEEEecCCeEEEEeECCeeCCCCCceEecccCcCceEEEEEEecCCC
Confidence 44444433 23443333 3333344322222211 234455566777776666543
No 41
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=97.47 E-value=0.011 Score=67.12 Aligned_cols=224 Identities=13% Similarity=0.136 Sum_probs=132.6
Q ss_pred CccCceEEEEEeCCcC-CCcchHHHHHHHHHHHHHhcCCC-------CeEEEEEeCCceEeee-----------------
Q 007719 322 KVFRKDVVFLVDVSGS-MQGVLLEQTKNALSASLSKLNPQ-------DSFNIIAFNGETHLFS----------------- 376 (591)
Q Consensus 322 ~~~~~~ivfviD~SgS-M~g~~i~~ak~al~~~l~~L~~~-------d~f~Ii~F~~~~~~~~----------------- 376 (591)
.+.|--++||||+|-. ....-++.++++++..|+.|+++ .+|++|+|++..+.+.
T Consensus 170 ~p~pp~y~FvIDvs~~av~sg~l~~~~~si~~~L~~lp~~~~~~~~~~~VG~ITfd~~vh~y~l~~~~~~~q~~vv~dl~ 249 (766)
T 3eh2_A 170 FPSPPAFIFMIDVSYNAIRTGLVRLLCEELKSLLDFLPREGGAEESAIRVGFVTYNKVLHFYNVKSSLAQPQMMVVSDVA 249 (766)
T ss_dssp CCCCCEEEEEEECSHHHHHTTHHHHHHHHHHHHGGGCCCCSSCSSCCCEEEEEEESSSEEEEECCTTCSSCEEEEECCTT
T ss_pred CCCCCEEEEEEECchhhccchHHHHHHHHHHHHHHhCCcccccCCccceEEEEEeCCEEEEEECCCCCCCceEEEecChh
Confidence 3456789999999853 33346889999999999999864 6899999999865321
Q ss_pred ----c----Cccc--CCHHHHHHHHHHHhcC---CCCCCCchHHHHHHHHHhhhcCCCCccEEEEEecCCCC--Ch----
Q 007719 377 ----S----SMKL--ASQGTIINATQWLSSL---VAGGGTNILLPLKQAIKLLSDTSESIPLIFLITDGTVG--DE---- 437 (591)
Q Consensus 377 ----~----~~~~--~~~~~~~~a~~~i~~l---~~~GgT~l~~aL~~a~~~l~~~~~~~~~IillTDG~~~--~~---- 437 (591)
| .+++ -....+..+++.|..+ ....+|.++.||+.|+..+...... -.|++++.|.++ +.
T Consensus 250 d~f~P~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~t~~g~al~aa~~~l~~~~~G-GkI~~F~s~lP~t~GpG~l~ 328 (766)
T 3eh2_A 250 DMFVPLLDGFLVNVNESRAVITSLLDQIPEMFADTRETETVFVPVIQAGMEALKAAECA-GKLFLFHTSLPIAEAPGKLK 328 (766)
T ss_dssp TCCCCCCTTSSBCTTTTHHHHHHHHHHHHHHHTTCCCCCCCSHHHHHHHHHHHHHTTCC-EEEEEEECSCCCSSSTTCCC
T ss_pred hhccccccceeEeHHHHHHHHHHHHHhhhhhccCCCCCcchHHHHHHHHHHHhccCCCC-cEEEEEecCCCCcCCCcccc
Confidence 0 0111 1245666666666533 2346788999999999988643222 356666666443 10
Q ss_pred --------------------hhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHhCCCEEEEcCCCCch--HHH
Q 007719 438 --------------------RGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYYDSAYDPGSV--DYR 495 (591)
Q Consensus 438 --------------------~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~LA~~~~G~~~~v~~~~~l--~~~ 495 (591)
....+.+...+.+ .++.+.+|+++ ...++-..|..+++.|||..++..+...- .++
T Consensus 329 ~r~~~~~~~sdke~~~~~~a~~fY~~la~~~~~-~~i~VDlF~~s-~~~vdlatl~~l~~~TGG~v~~y~~F~~~~d~~~ 406 (766)
T 3eh2_A 329 NRDDRKLINTDKEKTLFQPQTGAYQTLAKECVA-QGCCVDLFLFP-NQYVDVATLSVVPQLTGGSVYKYASFQVENDQER 406 (766)
T ss_dssp CCCCGGGTTSTTGGGGTSCSSTHHHHHHHHHHH-HTEEEEEEECC-SSCCCHHHHTHHHHHTTCCEEECTTCCHHHHHHH
T ss_pred cccccccCCCcchhhhccchHHHHHHHHHHHHh-CCeEEEEEEec-CCCcChHHHHHHHhhcCceEEEeCCCcchhHHHH
Confidence 0112333322222 13456677654 35678899999999999999887765421 233
Q ss_pred HHHHHHHh-ccceEEeE--EEEecCCCcceeeeCC---------CCCCcCCCCeEEEEEEEeCCC
Q 007719 496 IRRFFTAA-SSVFLTNM--TLETSKHLNSLELFPS---------HIPDFCLECPLIVSGRYSGNF 548 (591)
Q Consensus 496 ~~~~~~~~-~~p~~~~v--~l~~~~~~~~~~v~P~---------~i~~l~~g~~l~v~g~~~~~~ 548 (591)
+.+.+.+. ..+..-+. ++...+++.....+.. .++.+-.++.+.+.-++.++.
T Consensus 407 f~~dl~~~l~~~~gf~a~mrVR~S~glkv~~~~G~~~~~~t~~~~l~~i~~d~s~~v~f~~~~~l 471 (766)
T 3eh2_A 407 FLSDLRRDVQKVVGFDAVMRVRTSTGIRAVDFFGAFYMSNTTDVELAGLDGDKTVTVEFKHDDRL 471 (766)
T ss_dssp HHHHHHHHHHSCEEEEEEEEEEECTTEEEEEEEESCBCSSSSCEEEEEEETTCCEEEEEEESSCC
T ss_pred HHHHHHHHhhhcceeeEEEEEEecCCeEEEEeECCeecCCCCceeeccCCCCceEEEEEEecCCC
Confidence 44434333 23443343 3333344332222211 233444566666666666543
No 42
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=97.41 E-value=0.00064 Score=75.71 Aligned_cols=188 Identities=16% Similarity=0.109 Sum_probs=106.8
Q ss_pred ceEEEEEecCCCCCCCccCceEEEEEeCCcCCCcchHHHHHHHHHHHH---HhcCCCCeEEEEEeCCceEe-ee------
Q 007719 307 QIFCLYLFPGKSQSRKVFRKDVVFLVDVSGSMQGVLLEQTKNALSASL---SKLNPQDSFNIIAFNGETHL-FS------ 376 (591)
Q Consensus 307 ~~f~~~~~P~~~~~~~~~~~~ivfviD~SgSM~g~~i~~ak~al~~~l---~~L~~~d~f~Ii~F~~~~~~-~~------ 376 (591)
..|.+.+.+.. ..|.|++||+|.|+||. ..|+.+|+....++ +.+..+-||++.+|.+.... +.
T Consensus 91 ~~f~~~~~~~~-----~ypvDly~LmD~S~SM~-ddi~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~ 164 (687)
T 3k6s_B 91 AAFNVTFRRAK-----GYPIDLYYLMDLSYSML-DDLRNVKKLGGDLLRALNEITESGRIGFGSFVDKTVLPFVNTHPDK 164 (687)
T ss_dssp EEEEEEECCCC-----CCCCEEEEEEECSSTTH-HHHHTTTTCCTTHHHHHHSSCCSCEEEEEEECCCSSTTSSCCSSTT
T ss_pred eEEEEEEeccC-----CCceeEEEEEcCCcchH-HHHHHHHHHHHHHHHHHHhhCcCcEEeeEEeeccccCCccccCchh
Confidence 35666666543 35799999999999997 47777777665554 45567889999999885311 00
Q ss_pred ---cC---------------cccCCHHHHHHHHHHHhcCCCCCCCc----hHHHHHHHH---HhhhcCCCCccEEEEEec
Q 007719 377 ---SS---------------MKLASQGTIINATQWLSSLVAGGGTN----ILLPLKQAI---KLLSDTSESIPLIFLITD 431 (591)
Q Consensus 377 ---~~---------------~~~~~~~~~~~a~~~i~~l~~~GgT~----l~~aL~~a~---~~l~~~~~~~~~IillTD 431 (591)
|. .... .++..+..+.|+.....|+-+ -.+||..|+ +.+.=+. ..|.|||+||
T Consensus 165 ~~~Pc~~~~~~c~~~f~f~~~l~l-t~~~~~F~~~v~~~~isgn~D~PE~g~dAl~qa~vc~~~igWr~-a~rllV~~TD 242 (687)
T 3k6s_B 165 LRNPCPNKEKECQPPFAFRHVLKL-TNNSNQFQTEVGKQLISGNLDAPEGGLDAMMQVAACPEEIGWRN-VTRLLVFATD 242 (687)
T ss_dssp TTCCCCSCCCCCCCCCSCEEEEEE-ESCSHHHHHHHHTSCCCCCSSSSCCHHHHHHHHTTCHHHHCCCS-SCCEEEEECS
T ss_pred ccCCCCCCCCCcCCcccceeeccc-CCCHHHHHHHHhhccccCCCCCCchHHHHHHHHhhcccccCCcc-ceEEEEEECC
Confidence 00 0011 234566677788777776533 244444443 2222123 6789999999
Q ss_pred CCCCC---h-----------------------hh----HHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHhC-C
Q 007719 432 GTVGD---E-----------------------RG----ICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIG-R 480 (591)
Q Consensus 432 G~~~~---~-----------------------~~----i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~LA~~~-~ 480 (591)
..... . .. .+..+.+.+.+.+ -..||++- .. .....+.|+..- +
T Consensus 243 a~~H~agDg~l~gi~~pndg~Chl~~~~y~~s~~~DyPS~~ql~~~l~~~~--I~~ifavt-~~--~~~~y~~l~~~i~~ 317 (687)
T 3k6s_B 243 DGFHFAGDGKLGAILTPNDGRCHLEDNLYKRSNEFDYPSVGQLAHKLAENN--IQPIFAVT-SR--MVKTYEKLTEIIPK 317 (687)
T ss_dssp SCCCCTTGGGGGTCCCCCCSCCCCSSSBCSSGGGSCCCCGGGHHHHHHHTT--CBCCEEEC-GG--GHHHHHHHHHHSSS
T ss_pred CccccCCCccccceecCCCCccccCCCccccccccCCCCHHHHHHHHHHcC--CeEEEEEe-cc--chhhHHHHHhhcCC
Confidence 87541 0 00 0223333333221 13466662 22 334556666554 4
Q ss_pred CEEEEcC-CCCchHHHHHHHHHHhccce
Q 007719 481 GYYDSAY-DPGSVDYRIRRFFTAASSVF 507 (591)
Q Consensus 481 G~~~~v~-~~~~l~~~~~~~~~~~~~p~ 507 (591)
+....+. +...+.+.+...+.++.+.+
T Consensus 318 s~v~~L~~dSsni~~li~~ay~~i~s~v 345 (687)
T 3k6s_B 318 SAVGELSEDSSNVVQLIKNAYNKLSSRV 345 (687)
T ss_dssp CCEEECCTTCCSCGGGTTTHHHHHSSCC
T ss_pred ceeeeeccccHHHHHHHHHHHHhhhcee
Confidence 4443333 34457677777777776543
No 43
>3vi3_B Integrin beta-1; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_B*
Probab=97.30 E-value=0.0086 Score=62.69 Aligned_cols=187 Identities=14% Similarity=0.071 Sum_probs=112.1
Q ss_pred eEEEEEecCCCCCCCccCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhcC---CCCeEEEEEeCCceEe-ee-------
Q 007719 308 IFCLYLFPGKSQSRKVFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKLN---PQDSFNIIAFNGETHL-FS------- 376 (591)
Q Consensus 308 ~f~~~~~P~~~~~~~~~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L~---~~d~f~Ii~F~~~~~~-~~------- 376 (591)
.|.+.+.+.. ..|.|++||+|.|+||.. .++..|+....+++.|. .+-|+++.+|-+.... +.
T Consensus 110 ~f~v~~~~~~-----~yPVDLyyLmDlS~SM~d-dl~~lk~lg~~L~~~l~~~t~~~riGfGsFvDK~v~P~~~t~p~~~ 183 (454)
T 3vi3_B 110 TFTLKFKRAE-----DYPIDLYYLMDLSYSMKD-DLENVKSLGTDLMNEMRRITSDFRIGFGSFVEKTVMPYISTTPAKL 183 (454)
T ss_dssp CEEEEEECCS-----CCCEEEEEEEECSGGGHH-HHHHHTTHHHHHHHHHTTTCSSEEEEEEEECCCSSTTTSCCSTTTT
T ss_pred EEEEEEecCC-----CCceeEEEEecCCcchhh-HHHHHHHHHHHHHHHHHhcCCCeEEEEEEEeccccCCcccCChHHh
Confidence 4666555543 368999999999999974 78888888777776654 5779999999875210 00
Q ss_pred --cC--------------cccCCHHHHHHHHHHHhcCCCCCCCch----HHHHHHHHH---hhhcCCCCccEEEEEecCC
Q 007719 377 --SS--------------MKLASQGTIINATQWLSSLVAGGGTNI----LLPLKQAIK---LLSDTSESIPLIFLITDGT 433 (591)
Q Consensus 377 --~~--------------~~~~~~~~~~~a~~~i~~l~~~GgT~l----~~aL~~a~~---~l~~~~~~~~~IillTDG~ 433 (591)
|. .... .++..+..++|++....|+-+. .+||..|.- .+.=+. ..+.+||+||..
T Consensus 184 ~nPC~~~~~c~~~f~fr~~l~L-T~d~~~F~~~V~~~~isGn~D~PEgg~DAl~Qaavc~~~igWR~-a~rllV~~TDa~ 261 (454)
T 3vi3_B 184 RNPCTSEQNCTTPFSYKNVLSL-TNKGEVFNELVGKQRISGNLDSPEGGFDAIMQVAVCGSLIGWRN-VTRLLVFSTDAG 261 (454)
T ss_dssp TCCSCSSSCCCCCCSEEEEEEE-ESCHHHHHHHHTTCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCS-SEEEEEEEESSC
T ss_pred cCCCcCccCCCCCcceeeeeec-CCCHHHHHHHHhhccccCCCcCCchhHHHHHHHhccccccCCcc-ceEEEEEECCCC
Confidence 00 0111 1456677888888888766432 344443331 111123 667999999987
Q ss_pred CCC---h---------------------------hhHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHhCCCEE
Q 007719 434 VGD---E---------------------------RGICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGRGYY 483 (591)
Q Consensus 434 ~~~---~---------------------------~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~LA~~~~G~~ 483 (591)
..- . -..+..+.+.+.+.+ -..||++-= ......+.|+..=.|..
T Consensus 262 fH~agDgkL~GIv~PNDg~CHL~~~~Yt~s~~~DYPSv~ql~~~l~e~n--I~~IFAVt~---~~~~~Y~~L~~~ip~s~ 336 (454)
T 3vi3_B 262 FHFAGDGKLGGIVLPNDGQCHLENNMYTMSHYYDYPSIAHLVQKLSENN--IQTIFAVTE---EFQPVYKELKNLIPKSA 336 (454)
T ss_dssp BCCTTTTGGGTCCSCCCCCCCEETTEECCTTTSCCCCHHHHHHHHHHTT--EEEEEEEEG---GGHHHHHHHHHHSTTEE
T ss_pred cCcCCCccccceecCCCCccEeCCCcccccccCCCCCHHHHHHHHHhcC--CcEEEEEcC---ccchHHHHHHHhCCCce
Confidence 531 0 001344444444321 134777732 13345677777765554
Q ss_pred EE-c-CCCCchHHHHHHHHHHhccce
Q 007719 484 DS-A-YDPGSVDYRIRRFFTAASSVF 507 (591)
Q Consensus 484 ~~-v-~~~~~l~~~~~~~~~~~~~p~ 507 (591)
.- + .+.+.+-+.+...+.++.+.+
T Consensus 337 vg~Ls~dSsNiv~LI~~aY~~i~S~V 362 (454)
T 3vi3_B 337 VGTLSANSSNVIQLIIDAYNSLSSEV 362 (454)
T ss_dssp EEEECTTCTTHHHHHHHHHHHHHTCE
T ss_pred eeEccccchhHHHHHHHHHHHhheEE
Confidence 33 2 445667778888888877554
No 44
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Probab=96.82 E-value=0.0048 Score=65.31 Aligned_cols=188 Identities=17% Similarity=0.134 Sum_probs=110.4
Q ss_pred ceEEEEEecCCCCCCCccCceEEEEEeCCcCCCcchHHHHHHHHHHHHHhc---CCCCeEEEEEeCCceEe-ee------
Q 007719 307 QIFCLYLFPGKSQSRKVFRKDVVFLVDVSGSMQGVLLEQTKNALSASLSKL---NPQDSFNIIAFNGETHL-FS------ 376 (591)
Q Consensus 307 ~~f~~~~~P~~~~~~~~~~~~ivfviD~SgSM~g~~i~~ak~al~~~l~~L---~~~d~f~Ii~F~~~~~~-~~------ 376 (591)
..|.+.+.+.. ..|.|++||+|.|+||. ..++.+|+....+++.| ..+-|+++.+|-+.... +.
T Consensus 119 ~~f~v~~~~~~-----~yPVDLyyLmDlS~SM~-ddl~~lk~lg~~L~~~l~~~t~~~RiGfGsFvDK~v~P~~~~~p~~ 192 (503)
T 3v4v_B 119 QQLQVRFLRAE-----GYPVDLYYLMDLSYSMK-DDLERVRQLGHALLVRLQEVTHSVRIGFGSFVDKTVLPFVSTVPSK 192 (503)
T ss_dssp EEEEEEEECCS-----SCCEEEEEEEECSGGGH-HHHHHHHHSSHHHHHHHTTTCSCEEEEEEEECCCSSTTTSCCCHHH
T ss_pred EEEEEEEEccC-----CCceeEEEEEecCcchh-hHHHHHHHHHHHHHHHHHhhCcCcEEeeeeecccccCCcccCCHHH
Confidence 35666666543 36899999999999997 47888888877776655 45779999999875210 00
Q ss_pred ---cC---------------cccCCHHHHHHHHHHHhcCCCCCCCc----hHHHHHHHH---HhhhcCCCCccEEEEEec
Q 007719 377 ---SS---------------MKLASQGTIINATQWLSSLVAGGGTN----ILLPLKQAI---KLLSDTSESIPLIFLITD 431 (591)
Q Consensus 377 ---~~---------------~~~~~~~~~~~a~~~i~~l~~~GgT~----l~~aL~~a~---~~l~~~~~~~~~IillTD 431 (591)
|. ..+. .++..+..+.|++....|+-+ -.+||..|+ +.+.= ....|.+||+||
T Consensus 193 l~~PC~~~~~~c~p~f~fr~~l~L-T~d~~~F~~~V~~~~iSGnlD~PEggfDAlmQaavC~~~IgW-R~a~rllV~~TD 270 (503)
T 3v4v_B 193 LRHPCPTRLERCQSPFSFHHVLSL-TGDAQAFEREVGRQSVSGNLDSPEGGFDAILQAALCQEQIGW-RNVSRLLVFTSD 270 (503)
T ss_dssp HHCCSSCSSSCCCCCCSEEEEEEE-ESCSHHHHHHHTTCCCCCCSSSSBCHHHHHHHHHHCHHHHTC-CSSEEEEEEEES
T ss_pred hcCCCcCCCCCCCCCcceEEEEEe-cCCHHHHHHHHhhcCccCCCCCCchHHHHHHHHhhcccccCC-CcceEEEEEECC
Confidence 00 0111 135566777788777776643 234444443 12211 125679999999
Q ss_pred CCCCC--------------------hh-----------hHHHHHHHHHhcCCCCCCeEEEEEcCCCCCHHHHHHHHHhCC
Q 007719 432 GTVGD--------------------ER-----------GICNEIKSYLTNTRSISPRICTFGVGLYCNHYFLQILAQIGR 480 (591)
Q Consensus 432 G~~~~--------------------~~-----------~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~~~lL~~LA~~~~ 480 (591)
....- .. ..+..+.+.+.+.+ -..||++- . ......+.|+..=.
T Consensus 271 A~fH~agDgkLaGIv~pNDg~CHL~~~~~Yt~s~~~DYPSv~ql~~kL~enn--I~~IFAVt--~-~~~~~Y~~L~~~ip 345 (503)
T 3v4v_B 271 DTFHTAGDGKLGGIFMPSDGHCHLDSNGLYSRSTEFDYPSVGQVAQALSAAN--IQPIFAVT--S-AALPVYQELSKLIP 345 (503)
T ss_dssp SCBCCTTGGGTTTCCSCCCSSCCBCTTSBBGGGGGSCCCCHHHHHHHHHHHT--EEEEEEEC--S-SSHHHHHHHHTTST
T ss_pred CCcCcCCCccccceecCCCCCeEECCCCccccccccCCCCHHHHHHHHHhcC--CeEEEEEc--c-cchhHHHHHHHhCC
Confidence 87430 00 01233333333221 13476662 2 23456677776655
Q ss_pred CEE-EEc-CCCCchHHHHHHHHHHhccce
Q 007719 481 GYY-DSA-YDPGSVDYRIRRFFTAASSVF 507 (591)
Q Consensus 481 G~~-~~v-~~~~~l~~~~~~~~~~~~~p~ 507 (591)
|.. -.+ .+.+.+-+.+...+.++.+.+
T Consensus 346 ~s~vg~Ls~dSsNiv~LI~~aY~~i~S~V 374 (503)
T 3v4v_B 346 KSAVGELSEDSSNVVQLIMDAYNSLSSTV 374 (503)
T ss_dssp TCEEEECCTTSCTHHHHHHHHHHHHHTCE
T ss_pred CceeeEccccchhHHHHHHHHHHHhheEE
Confidence 543 333 344667778888888877654
No 45
>4g2a_A Hypothetical protein; two domains protein, yarhg domain (PFAM13308), DUF4424 (PF14 structural genomics; HET: MSE; 2.33A {Legionella pneumophila subsp}
Probab=96.32 E-value=0.12 Score=51.38 Aligned_cols=111 Identities=12% Similarity=0.169 Sum_probs=76.8
Q ss_pred CCccccccceeEEEE-----EEEE-------eeeEEEEEEEEEEecccCCCceeeEEEEeecCCC---------------
Q 007719 78 PPALIPLHMHGVEME-----VDCC-------LDTAFVAFNGSWRVHCIMAGRQCDCTIAVPLGER--------------- 130 (591)
Q Consensus 78 ~~~~~pL~~~~v~v~-----V~~~-------~~~a~v~~~q~f~n~~~~~~~~~e~~y~fPL~~~--------------- 130 (591)
+..++||+...|.+. |+.. -..+.|+|.-+|.| ++.......+.||+|..
T Consensus 10 g~~~iP~~~s~Ism~kE~i~ik~~~~~~~~~~~~~~V~v~f~F~N---p~~~~ktI~vgFP~p~~~~~~~~~~~~~~~~~ 86 (322)
T 4g2a_A 10 GSLPIPVSQPHIKMVSELIRISGKNLNEPQMNGSWHYNCNFTFKN---TLNKEVTISMAFPFPINDGNSEIALPAGQQTN 86 (322)
T ss_dssp EECCEESSCCSEEEEEEEEEEEEESTTCTTCCCEEEEEEEEEEEE---CSSSCEEEEEEEEECBCCSSSEECCCTTCCCC
T ss_pred CCeeeeeccCceeEEEEEEEEEeccccccccccceEEEEEEEEeC---CCCCcEEEEEEecCCCccCCcccccccccCCC
Confidence 345778887666554 3211 12477999999999 67788889899998832
Q ss_pred ---eeEEEEEEEECCEEEEEEEEehHhhhhhhhhccccCCccceecCceEEEcCCCCCCCEEEEEEEEEEeeecc
Q 007719 131 ---GSLLGVEVEIDGRSYQSKLISLDDAEYKENVGKSKGDGRYLKGQIYTLRIPQVDGGSTLSIKVNWSQKLTYE 202 (591)
Q Consensus 131 ---a~V~~f~~~i~gk~i~~~v~~k~~a~~~~~~~~~~~~~~ll~~~~F~~~v~~i~~g~~v~I~i~y~q~L~~~ 202 (591)
..+.+|...||||.+..++.....-. +.+.--.+.|.... ..++|+++.|+-+|.-.+...
T Consensus 87 ~~~~~i~dFkt~VNGk~V~~~~~~~a~~~----------~k~v~~~~~Y~f~~-~F~~G~~~~V~HsY~~~~s~~ 150 (322)
T 4g2a_A 87 VGQALVYDFLVTVNDKQVSAQRGNIAPDQ----------NKGLYYEDAYFWKT-TFPPLATVNIHHDYSTGATYD 150 (322)
T ss_dssp TTCBSCEEEEEEETTEEECCEEEECCCBG----------GGTBCCSEEEEEEE-EECTTCEEEEEEEEEEECEEE
T ss_pred CCCcceeeEEEEECCEEcccchhhcCccc----------cCCcccceeEEEee-ecCCCCeeEEEEEEEecCcCC
Confidence 23889999999999988875433211 11111234565555 689999999999998777655
No 46
>1o98_A 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; isomerase, alpha/beta-type structure; HET: 2PG; 1.4A {Bacillus stearothermophilus} SCOP: c.105.1.1 c.76.1.3 PDB: 1ejj_A* 1eqj_A* 1o99_A* 2ify_A
Probab=38.35 E-value=1.2e+02 Score=32.16 Aligned_cols=61 Identities=16% Similarity=0.122 Sum_probs=34.4
Q ss_pred HHHHHHHHhhhcCCCCccEEEEEecCCCCC-hhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCC
Q 007719 407 LPLKQAIKLLSDTSESIPLIFLITDGTVGD-ERGICNEIKSYLTNTRSISPRICTFGVGLYCN 468 (591)
Q Consensus 407 ~aL~~a~~~l~~~~~~~~~IillTDG~~~~-~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~ 468 (591)
++|..+++...+..+..-.+=|+|||.+.. ...+...++-. .+.+-..+.||+|.=|.++.
T Consensus 95 ~~~~~~~~~~~~~~~~~H~~gl~sdggvhsh~~hl~~l~~~a-~~~g~~~v~~H~~~dGrD~~ 156 (511)
T 1o98_A 95 ETFLAAMNHVKQHGTSLHLFGLLSDGGVHSHIHHLYALLRLA-AKEGVKRVYIHGFLDGRDVG 156 (511)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEECSSCCSSCCHHHHHHHHHHH-HHTTCCCEEEEEEECSSSSC
T ss_pred HHHHHHHHHHHhcCCeEEEEEeccCCCCccHHHHHHHHHHHH-HHCCCCeEEEEEEccCCCCC
Confidence 455555555443334555677888888753 34444444333 33333456788887777654
No 47
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=35.06 E-value=1.2e+02 Score=25.30 Aligned_cols=28 Identities=21% Similarity=0.487 Sum_probs=20.7
Q ss_pred CCCCCCEEEEEEEEEEeeecccCeEEEEEe
Q 007719 182 QVDGGSTLSIKVNWSQKLTYEEGQFCLSVP 211 (591)
Q Consensus 182 ~i~~g~~v~I~i~y~q~L~~~~g~~~~~lp 211 (591)
.|+||+.+..+.+|.+ ....|.|.+..-
T Consensus 73 tl~pGE~~~f~~~w~~--~~~pG~Ytl~a~ 100 (120)
T 3isy_A 73 TLESGETYDFSDVWKE--VPEPGTYEVKVT 100 (120)
T ss_dssp EECTTCEEEEEEEESS--CCCSEEEEEEEE
T ss_pred EECCCCEEEEEEEeCC--CCCCccEEEEEE
Confidence 4899999999999984 234678876553
No 48
>3igz_B Cofactor-independent phosphoglycerate mutase; glycolysis, cobalt, isomerase; HET: 3PG 2PG; 1.90A {Leishmania mexicana} PDB: 3igy_B* 3nvl_A
Probab=25.19 E-value=1.8e+02 Score=31.18 Aligned_cols=62 Identities=18% Similarity=0.141 Sum_probs=40.0
Q ss_pred HHHHHHHHHhhhcCCCCccEEEEEecCCCCC-hhhHHHHHHHHHhcCCCCCCeEEEEEcCCCCC
Q 007719 406 LLPLKQAIKLLSDTSESIPLIFLITDGTVGD-ERGICNEIKSYLTNTRSISPRICTFGVGLYCN 468 (591)
Q Consensus 406 ~~aL~~a~~~l~~~~~~~~~IillTDG~~~~-~~~i~~~v~~~~~~~~~~~~ri~t~GiG~~~~ 468 (591)
..+|..+++...+..+..-.+=|+|||.+.. ...+...++-.. +.+-..+.||+|.=|.++.
T Consensus 107 n~~l~~~~~~~~~~~~~lHl~GL~SdGGVHSh~~Hl~~l~~~a~-~~g~~~v~vH~f~DGRD~~ 169 (561)
T 3igz_B 107 GEGYRYLHGAFSKEGSTLHLIGLLSDGGVHSRDNQIYSIIEHAV-KDGAKRIRVHALYDGRDVP 169 (561)
T ss_dssp SHHHHHHHHHHTSTTCCEEEEEECSSCCSSCCHHHHHHHHHHHH-HTTCCEEEEEEEECSSSSC
T ss_pred CHHHHHHHHHHHhcCCeEEEEEeccCCCccchHHHHHHHHHHHH-HcCCCeEEEEEEccCCCCC
Confidence 3456666666554445566888999999864 445555544433 3333457899998888765
Done!