Query 007720
Match_columns 591
No_of_seqs 191 out of 1188
Neff 5.4
Searched_HMMs 46136
Date Thu Mar 28 14:25:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007720.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007720hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2493 Na+/Pi symporter [Inor 100.0 3E-106 7E-111 853.8 22.5 475 23-585 23-508 (512)
2 PF01384 PHO4: Phosphate trans 100.0 3.8E-78 8.3E-83 632.8 27.5 316 42-575 1-326 (326)
3 COG0306 PitA Phosphate/sulphat 100.0 1E-76 2.2E-81 617.6 30.1 315 25-583 2-323 (326)
4 COG0306 PitA Phosphate/sulphat 99.8 7.1E-20 1.5E-24 191.9 10.5 145 419-582 5-157 (326)
5 PF01384 PHO4: Phosphate trans 99.8 1.1E-18 2.4E-23 183.9 10.0 133 434-584 2-146 (326)
6 KOG2493 Na+/Pi symporter [Inor 99.7 4E-17 8.6E-22 175.3 10.9 146 420-584 29-185 (512)
7 PRK09541 emrE multidrug efflux 62.7 27 0.00059 31.8 6.7 65 65-136 6-73 (110)
8 PRK11431 multidrug efflux syst 58.5 34 0.00074 30.9 6.6 60 65-131 5-65 (105)
9 PRK10650 multidrug efflux syst 57.2 39 0.00084 30.8 6.7 60 65-131 11-71 (109)
10 PRK10452 multidrug efflux syst 54.1 41 0.00088 31.2 6.4 61 65-131 6-66 (120)
11 COG2076 EmrE Membrane transpor 48.1 46 0.001 30.4 5.6 60 65-131 6-66 (106)
12 PF14342 DUF4396: Domain of un 43.9 1.7E+02 0.0037 27.8 9.1 64 121-201 8-73 (139)
13 PRK09573 (S)-2,3-di-O-geranylg 43.4 2.2E+02 0.0048 29.5 10.7 82 46-139 65-146 (279)
14 PF00893 Multi_Drug_Res: Small 38.4 1E+02 0.0022 26.9 6.2 59 65-130 5-64 (93)
15 PRK15051 4-amino-4-deoxy-L-ara 32.9 1.3E+02 0.0028 27.1 6.2 64 66-129 6-71 (111)
16 PF02990 EMP70: Endomembrane p 25.7 3.5E+02 0.0077 30.9 9.5 64 160-225 299-362 (521)
17 TIGR03113 exosortase_2 exosort 24.9 2.5E+02 0.0053 29.6 7.4 53 486-538 100-163 (268)
18 PRK12848 ubiA 4-hydroxybenzoat 24.5 6.1E+02 0.013 26.4 10.3 25 54-78 80-104 (282)
19 PF00893 Multi_Drug_Res: Small 24.4 1.3E+02 0.0028 26.2 4.5 61 472-538 3-63 (93)
20 PRK13106 ubiA prenyltransferas 24.0 7.9E+02 0.017 26.1 11.1 25 54-79 87-111 (300)
21 PF11947 DUF3464: Protein of u 23.4 2.8E+02 0.0061 27.0 6.9 54 181-246 58-111 (153)
22 TIGR03480 HpnN hopanoid biosyn 23.4 1.2E+03 0.026 28.3 13.9 51 169-219 329-386 (862)
23 PRK10650 multidrug efflux syst 23.3 1.4E+02 0.003 27.2 4.6 85 470-560 7-96 (109)
24 PF14147 Spore_YhaL: Sporulati 23.2 74 0.0016 25.5 2.4 25 470-499 1-25 (52)
25 PRK09541 emrE multidrug efflux 23.0 1.4E+02 0.0031 27.1 4.6 80 475-560 7-91 (110)
26 PF06570 DUF1129: Protein of u 22.7 5.5E+02 0.012 25.5 9.2 16 170-185 119-134 (206)
27 PRK12871 ubiA prenyltransferas 22.2 3.4E+02 0.0074 28.8 8.0 26 54-79 88-113 (297)
28 PF05106 Phage_holin_3: Phage 20.8 91 0.002 27.9 2.8 44 95-144 46-89 (100)
29 PRK11431 multidrug efflux syst 20.2 1.7E+02 0.0038 26.4 4.5 60 474-539 5-64 (105)
No 1
>KOG2493 consensus Na+/Pi symporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.2e-106 Score=853.80 Aligned_cols=475 Identities=24% Similarity=0.445 Sum_probs=382.0
Q ss_pred chhHHHHHHHHHHHHHHHhcccCCCCccchhhcccCcccHHHHHHHHHHHHhhhhhhcCCcc---------ccccCCCCh
Q 007720 23 TYQWVPVLGGFAAFAMAFSAGANNLPAPFSTALGSGTLTLLKASIMAGLIYVPGAALASNST---------FIKENQPSE 93 (591)
Q Consensus 23 ~~~w~~~~~~i~A~~~a~~iGANDvANsfgTsVGs~~lt~~qA~ilA~IfEflGAvllG~~V---------~~~~~~~~p 93 (591)
.++|++++|+++||+++|++||||+|||||||||||++|++||+++|+|||++|++|+|++| ..+.|+++|
T Consensus 23 ~~~w~livg~i~afll~f~mGANDvaNsfgtSVgSgvltl~QA~iLAsife~lGsvl~G~~V~dt~r~gVId~s~y~~~~ 102 (512)
T KOG2493|consen 23 SFLWALIVGFIVAFLLAFGMGANDVANSFGTSVGSGVLTLKQAYILASIFETLGSVLLGASVTDTMRKGVIDFSIYNDTP 102 (512)
T ss_pred hhHHHHHHHHHHHHHHhcccCccccccccccccccCceehHHHHHHHHHHHHHHHHHccchhhhhHHhceeehHHhcCCH
Confidence 59999999999999999999999999999999999999999999999999999999999996 234578899
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHhhhccccccccccccCCCCcCCCcchhhhhhhhhhhhH
Q 007720 94 GFLMWSMVVVLITATIWLVIATYFELPVSPQQATQAALLGSMLVTEGFDYIPLWNKNDNHNFNGGGLLWIFLEWTVAPLF 173 (591)
Q Consensus 94 ~vLmlGM~~al~~a~~wl~~aT~~~lPVStThsivGaiiG~~l~~~G~~~V~~W~~~~~~~~~~~~~~~I~~sW~isPi~ 173 (591)
..+|+||.++|+|++.|+++||.+++||||||+|||+.+||+++.+|.+++ .|.+ +.+|+.|||+||++
T Consensus 103 ~~lmlgqva~L~G~a~W~l~At~~~~PvSttHsiVgatigfs~~~~g~~Gi-~w~~----------v~~iv~swfiSpil 171 (512)
T KOG2493|consen 103 KTLMLGQVAALFGSAAWLLVATFLKLPVSTTHSIVGATIGFSLVARGFNGI-VWME----------VIKIVASWFISPIL 171 (512)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHcCCccceeeeeeheeeeeeeeccccce-eehh----------hHHHHHHHhhhHHH
Confidence 999999999999999999999999999999999999999999999999999 7865 67999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccHHHHHHHHhhHHHHHHHHHHHHHHHhhhcCcc--cccchHHHHHHHHHHHHHHHHhhhh
Q 007720 174 ACMCACFLFILLKVLILRHKNARERILIFFPVDYGLSAGLLCLFLVYRVRGHL--VHIPRWVTIAAVALATFIGAVLPLV 251 (591)
Q Consensus 174 ~~~~a~~l~~~~~~~IL~r~n~~~~al~~~Pi~~~lt~~i~~~~iv~kg~~~l--~~~~~w~~~~~~~~~~~i~~~l~~~ 251 (591)
+++++.++|.++|+.+||++||++++++.+|++|+++..+|+|.++|+|++.+ .+++.|...+++.+...+++++.++
T Consensus 172 sg~~s~ilf~~v~~svl~~~~p~~~gl~~lp~~y~~~~~~n~f~ivy~Gs~~l~~d~l~~~~~~~is~~~g~i~a~i~~f 251 (512)
T KOG2493|consen 172 SGIISAILFFLVDHSVLRAANPVKNGLRLLPVFYFITVSINVFGIVYDGSKVLGLDSLPLWATILISVGLGVIAAFIVYF 251 (512)
T ss_pred HHHHHHHHHHHHHHHHHHhcCchhhchhhcchhhhhhhhheeeeEEecCcceeeeccchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999954 5789998877777777788899999
Q ss_pred hhhhhhhhhccccchhhhccccCCCCchhhhhhhhcccccCCCCCCCchhHHHHHHHHHhhhccchhhhhhhccCCCCCC
Q 007720 252 VIVPLATKELGATEKHKTAKNNNMNSTKEQCVEIQDQTCSNNTKGRDDEAEDVLREFMQRRVLDTVYEEEERNSCASPDS 331 (591)
Q Consensus 252 ~~vP~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 331 (591)
++.|+++||+.+.+..+ ..++..+- +.....++.++..+.++.. .. +.
T Consensus 252 ~v~p~~~~ki~~~k~~~-----~~~~~~~~-----~~~s~~~~~~~~~~i~~~~------------~~--e~-------- 299 (512)
T KOG2493|consen 252 FVRPFMRRKINRGKETD-----EAPPVSEV-----SGSSARRELGKSVEIKEES------------AV--ES-------- 299 (512)
T ss_pred HhhHHHHhhcccccccc-----cCCCccch-----hccccccccccccchhccc------------cc--cc--------
Confidence 99999999887421110 00111000 0000000000000111100 00 00
Q ss_pred CcccchhhhhhcccccchhhhccccCCCCcccccccccccCCCCcccchhhhhcccccccCccchhhhhhHHHhhhhhhh
Q 007720 332 TIKDSDQQLALSTGQSTQFKHLLQCTPNNLVQTKTFHKTENQSPFQSAYNFVRNFTKSTVSPVIEYDRNTLIRHALAEKY 411 (591)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 411 (591)
..+..+ .+.+ .. + ...|.....+.+-++.+ .+.. + +.. +-+.
T Consensus 300 ~~~~~~--~~~t---~~--~---~~~P~~~~~qgk~~~~~---------~~l~--------p----~~~-------r~d~ 341 (512)
T KOG2493|consen 300 TVKNLR--IQNT---SA--I---TKSPSTSESQGKIRKLE---------KWLW--------P----DVT-------RVDS 341 (512)
T ss_pred cccchh--hcch---hh--c---cCCCCCccccCccchhh---------eeec--------C----CCC-------cccH
Confidence 000000 0000 00 0 00000000000000000 0000 0 000 0012
Q ss_pred hhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhcCcccCCCCCcccCcchhHHHHHHHHHHHHHHHHhhhh
Q 007720 412 DEIEDCFSVPHLLASCIFALIQSVSEIAAIVSPYGAIVDIFNNRAKYSGNGEDVDSIDVSWWFRALGGLGAVMGFILCGW 491 (591)
Q Consensus 412 ~~~e~lfs~LQVlsA~~~aFaHGaNDvANaigPlaai~~~~~~g~~~~~~~~~~~~~~~p~wi~~~g~~~i~~G~~~~G~ 491 (591)
++++++|++|||+|||+++||||+|||+||+||++++|.+|++|.. .++..+|+|++++|+++|++|+|++|+
T Consensus 342 e~v~~lFs~lQvlTACF~sFAHGaNDVsNAIgPL~Al~~iy~~g~v-------~~k~~~Pi~vLlyG~~aicvGlw~~G~ 414 (512)
T KOG2493|consen 342 EEVSRLFSTLQVLTACFASFAHGANDVSNAIGPLVALYLIYRTGYV-------EQKEETPIYVLLYGGFAICVGLWTLGH 414 (512)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHHHHHcCCc-------cceeccceeeeecccceeeeeehhhhH
Confidence 3688999999999999999999999999999999999999999843 346789999999999999999999999
Q ss_pred HHHHHHhcccccccCCchHHHHHHHHHHHHHHhhcCCccccccccccceeeeeecCCCcccchHHHHHHhHHhhhhHHHH
Q 007720 492 KLTQCLGGKLTYMSNSRGLASQLSTVAAVIIVSTTNLPVSTVHAFVGSLVGVGIADDIQNVNWKLLFKFICGWVMTIIFC 571 (591)
Q Consensus 492 rV~~TvG~~it~l~p~~gf~a~l~aa~~v~~as~~GlPVSTTh~ivgaviGvG~~~~~~~V~w~~~~~I~~~Wi~T~p~a 571 (591)
|||||+|+|+++++|.+||++|+++|+|+++||++|||+|||||.||||++||++|+.++|||+++|+|+++|++|+|++
T Consensus 415 rVIkTvG~kmt~itPasGFsIEfgaA~TvLiAsklGlPiStThc~VGsVvaVG~~rs~~~V~w~~fR~I~~sW~vTlPvs 494 (512)
T KOG2493|consen 415 RVIKTVGKKMTEITPASGFSIEFGAAITVLIASKLGLPISTTHCLVGSVVAVGLARSLKGVDWRTFRNIFFSWFVTLPVS 494 (512)
T ss_pred HHHHHHhhcccccCCCccceeeHHHHHHHHHHHhcCCCcccceeeeeeEEEEEEeccCCCcchHHHHHhHhhheeecchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhc
Q 007720 572 CGAAFAIFYASVHA 585 (591)
Q Consensus 572 ~~~~~~l~~~~~~~ 585 (591)
++++++++++.-+.
T Consensus 495 glisa~~m~Il~~~ 508 (512)
T KOG2493|consen 495 GLISAGIMWILQYA 508 (512)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988654
No 2
>PF01384 PHO4: Phosphate transporter family; InterPro: IPR001204 The PHO-4 family of transporters includes the phosphate-repressible phosphate permease (PHO-4) from Neurospora crassa which is probably a sodium-phosphate symporter []. This family also includes the human leukemia virus receptor.; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0006817 phosphate ion transport, 0016020 membrane
Probab=100.00 E-value=3.8e-78 Score=632.76 Aligned_cols=316 Identities=35% Similarity=0.647 Sum_probs=286.6
Q ss_pred cccCCCCccchhhcccCcccHHHHHHHHHHHHhhhhhhcCCcc---c----cc--cCC-CChhHHHHHHHHHHHHHHHHH
Q 007720 42 AGANNLPAPFSTALGSGTLTLLKASIMAGLIYVPGAALASNST---F----IK--ENQ-PSEGFLMWSMVVVLITATIWL 111 (591)
Q Consensus 42 iGANDvANsfgTsVGs~~lt~~qA~ilA~IfEflGAvllG~~V---~----~~--~~~-~~p~vLmlGM~~al~~a~~wl 111 (591)
||+||+||+|||+||||++|+|||++++++|||+||++.|.+| + .+ .+. ++|+.+|.+|+|+++++++|+
T Consensus 1 ~GaND~an~~gt~Vgs~al~~~~A~ila~i~~~lGa~l~G~~V~~ti~~~iv~~~~~~~~~~~~~~~~~~~al~~a~iw~ 80 (326)
T PF01384_consen 1 NGANDAANSFGTAVGSRALTPRQALILAAIFNFLGALLFGTAVAETIGKGIVDPSYFTVDDPQILMIGMLAALLAAAIWL 80 (326)
T ss_pred CCccchHHHHHHHHhcCccCHHHHHHHHHHHHHhHHHHhhHHHHHHHHhccccccccccccchHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999999985 2 11 233 567889999999999999999
Q ss_pred HHHHhhCCCCCchhHHHHHHHHHHhhhccccccccccccCCCCcCCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHhhc
Q 007720 112 VIATYFELPVSPQQATQAALLGSMLVTEGFDYIPLWNKNDNHNFNGGGLLWIFLEWTVAPLFACMCACFLFILLKVLILR 191 (591)
Q Consensus 112 ~~aT~~~lPVStThsivGaiiG~~l~~~G~~~V~~W~~~~~~~~~~~~~~~I~~sW~isPi~~~~~a~~l~~~~~~~IL~ 191 (591)
+++|++|+|+||||++||+++|++++.+|.+.+ +|++ ++.+|+++|++||++++++|+++|+++|+.+++
T Consensus 81 ~i~t~~glPvStThalvGal~G~~l~~~g~~~v-~w~~---------~~~~I~~~wv~sPlia~~~a~~l~~~~~~~~~~ 150 (326)
T PF01384_consen 81 LIATWLGLPVSTTHALVGALIGAGLASGGFSAV-NWSK---------GLLKIVLSWVISPLIAFILAYILYRLIRRIFLR 150 (326)
T ss_pred HHHHHhCCCchHHHHHHHHHHHHHHHHhhhhhc-hHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998888 6752 378999999999999999999999999999999
Q ss_pred cccHHHHHHHHhhHHHHHHHHHHHHHHHhhhcCcccccchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccccchhhhcc
Q 007720 192 HKNARERILIFFPVDYGLSAGLLCLFLVYRVRGHLVHIPRWVTIAAVALATFIGAVLPLVVIVPLATKELGATEKHKTAK 271 (591)
Q Consensus 192 r~n~~~~al~~~Pi~~~lt~~i~~~~iv~kg~~~l~~~~~w~~~~~~~~~~~i~~~l~~~~~vP~~~~~~~~~~~~~~~k 271 (591)
++|+.+++++..|+++
T Consensus 151 ~~~~~~~~~~~~~~~~---------------------------------------------------------------- 166 (326)
T PF01384_consen 151 RKNPVKRALRPLPILF---------------------------------------------------------------- 166 (326)
T ss_pred hHHHHHhhhhccccch----------------------------------------------------------------
Confidence 9888877655555332
Q ss_pred ccCCCCchhhhhhhhcccccCCCCCCCchhHHHHHHHHHhhhccchhhhhhhccCCCCCCCcccchhhhhhcccccchhh
Q 007720 272 NNNMNSTKEQCVEIQDQTCSNNTKGRDDEAEDVLREFMQRRVLDTVYEEEERNSCASPDSTIKDSDQQLALSTGQSTQFK 351 (591)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 351 (591)
T Consensus 167 -------------------------------------------------------------------------------- 166 (326)
T PF01384_consen 167 -------------------------------------------------------------------------------- 166 (326)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hccccCCCCcccccccccccCCCCcccchhhhhcccccccCccchhhhhhHHHhhhhhhhhhhhhhhhhhHHHHHHHHHH
Q 007720 352 HLLQCTPNNLVQTKTFHKTENQSPFQSAYNFVRNFTKSTVSPVIEYDRNTLIRHALAEKYDEIEDCFSVPHLLASCIFAL 431 (591)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~e~lfs~LQVlsA~~~aF 431 (591)
.+++.|+.|+++|++++|++||
T Consensus 167 ----------------------------------------------------------~~~~~~~~~~~l~i~sa~~~sf 188 (326)
T PF01384_consen 167 ----------------------------------------------------------FDPRVEKIFRFLQILSAAFVSF 188 (326)
T ss_pred ----------------------------------------------------------hhHHHHHHHHHHHHHHHHHHHH
Confidence 0012356799999999999999
Q ss_pred hhhhhhhhhhhhhHHHHHHHHhcCcccCCCCCcccCcchhHHHHHHHHHHHHHHHHhhhhHHHHHHhcccccccCCchHH
Q 007720 432 IQSVSEIAAIVSPYGAIVDIFNNRAKYSGNGEDVDSIDVSWWFRALGGLGAVMGFILCGWKLTQCLGGKLTYMSNSRGLA 511 (591)
Q Consensus 432 aHGaNDvANaigPlaai~~~~~~g~~~~~~~~~~~~~~~p~wi~~~g~~~i~~G~~~~G~rV~~TvG~~it~l~p~~gf~ 511 (591)
+||+||++|++||+++++.+|.+|... .++.++|+|+++++++++++|++++|||||||+|+||++++|.|||+
T Consensus 189 ahGaND~~naig~~~~~~~~~~~g~~~------~~~~~~p~~~~~~~~~~i~~G~~~~G~rv~~tvG~~it~l~p~~g~~ 262 (326)
T PF01384_consen 189 AHGANDVANAIGPLAAILIIYNTGSVN------SGKAEIPWWILLLGGLAIALGTLTGGWRVIRTVGEKITKLDPSRGFS 262 (326)
T ss_pred HHHhccHHHHHHHHHHHHHHhhcCCcc------cccccChHHHHHHHHHHHHHHHHHhhHHHHHHhccchhccCcchhHH
Confidence 999999999999999999999986421 22357899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCccccccccccceeeeeecCCCcccchHHHHHHhHHhhhhHHHHHHHH
Q 007720 512 SQLSTVAAVIIVSTTNLPVSTVHAFVGSLVGVGIADDIQNVNWKLLFKFICGWVMTIIFCCGAA 575 (591)
Q Consensus 512 a~l~aa~~v~~as~~GlPVSTTh~ivgaviGvG~~~~~~~V~w~~~~~I~~~Wi~T~p~a~~~~ 575 (591)
+|++++++++++|.+|+|||||||++|||+|+|++++.+.|||+.+++|+++|++|+|+|+++|
T Consensus 263 a~l~sa~~v~~as~~GlPvStT~~~vgaivGvG~~~~~~~V~w~~~~~I~~~Wi~T~p~a~~~S 326 (326)
T PF01384_consen 263 AQLSSALTVLIASLLGLPVSTTHAIVGAIVGVGLARGFRSVNWKTVRKIVLGWILTLPIAALLS 326 (326)
T ss_pred HHHHHHHHHHHHHhcCCCcchhheeeeeeEeeeeecCCCcccHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999999874
No 3
>COG0306 PitA Phosphate/sulphate permeases [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-76 Score=617.58 Aligned_cols=315 Identities=28% Similarity=0.494 Sum_probs=282.9
Q ss_pred hHHHHHHHHHHHHHHHhcccCCCCccchhhcccCcccHHHHHHHHHHHHhhhhhhcCCcc---ccccCCC----ChhHHH
Q 007720 25 QWVPVLGGFAAFAMAFSAGANNLPAPFSTALGSGTLTLLKASIMAGLIYVPGAALASNST---FIKENQP----SEGFLM 97 (591)
Q Consensus 25 ~w~~~~~~i~A~~~a~~iGANDvANsfgTsVGs~~lt~~qA~ilA~IfEflGAvllG~~V---~~~~~~~----~p~vLm 97 (591)
..++++..++++||+|+||+||+||+|||+||||++|+|||+++|++|||+||++.|.+| +.++..+ ++...+
T Consensus 2 ~~l~~~~li~~l~~a~~iGand~ana~gtaVgs~alt~~~Av~laavf~f~Ga~l~g~~V~~TI~~~iv~~~~~~~~~~~ 81 (326)
T COG0306 2 LLLLVLALIAALFFAFNIGANDTANAVGTAVGSGALTPRQAVLLAAVFNFLGALLGGGNVAETIGSGIVDPGLLNDSLTP 81 (326)
T ss_pred hHHHHHHHHHHHHHHHHhcccchhhhhhhhhccCCccHHHHHHHHHHHHHHHHHHcCccHHHHHhcCCCCchhccchhhH
Confidence 467889999999999999999999999999999999999999999999999999999986 3333222 115788
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHhhhccccccccccccCCCCcCCCcchhhhhhhhhhhhHHHHH
Q 007720 98 WSMVVVLITATIWLVIATYFELPVSPQQATQAALLGSMLVTEGFDYIPLWNKNDNHNFNGGGLLWIFLEWTVAPLFACMC 177 (591)
Q Consensus 98 lGM~~al~~a~~wl~~aT~~~lPVStThsivGaiiG~~l~~~G~~~V~~W~~~~~~~~~~~~~~~I~~sW~isPi~~~~~ 177 (591)
++|+++|+++++|++++|++|+|+||||++||+++|+|+++++. .+ +|+ .+.+|+.+|++||++++++
T Consensus 82 ~~~~aaLlaa~~w~~ia~~~GiP~StshaiiGaiiG~gla~~~~-~~-~~~----------~~~~Iv~swvlsPii~~~i 149 (326)
T COG0306 82 AGVLAALLAAILWNLIATYLGIPVSTSHALIGAIIGAGLALGGG-VV-DWG----------VLGKIVASWVLSPILGGVL 149 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHccc-ch-hHH----------HHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998776 33 564 3669999999999999999
Q ss_pred HHHHHHHHHHHhhccccHHHHHHHHhhHHHHHHHHHHHHHHHhhhcCcccccchHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 007720 178 ACFLFILLKVLILRHKNARERILIFFPVDYGLSAGLLCLFLVYRVRGHLVHIPRWVTIAAVALATFIGAVLPLVVIVPLA 257 (591)
Q Consensus 178 a~~l~~~~~~~IL~r~n~~~~al~~~Pi~~~lt~~i~~~~iv~kg~~~l~~~~~w~~~~~~~~~~~i~~~l~~~~~vP~~ 257 (591)
|+++|.++|+.+++++
T Consensus 150 a~~l~~~~~~~~~~~~---------------------------------------------------------------- 165 (326)
T COG0306 150 AYLLYSLLRRLIVGKD---------------------------------------------------------------- 165 (326)
T ss_pred HHHHHHHHHHHHhccc----------------------------------------------------------------
Confidence 9999999987543200
Q ss_pred hhhccccchhhhccccCCCCchhhhhhhhcccccCCCCCCCchhHHHHHHHHHhhhccchhhhhhhccCCCCCCCcccch
Q 007720 258 TKELGATEKHKTAKNNNMNSTKEQCVEIQDQTCSNNTKGRDDEAEDVLREFMQRRVLDTVYEEEERNSCASPDSTIKDSD 337 (591)
Q Consensus 258 ~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 337 (591)
+
T Consensus 166 ---------------~---------------------------------------------------------------- 166 (326)
T COG0306 166 ---------------G---------------------------------------------------------------- 166 (326)
T ss_pred ---------------c----------------------------------------------------------------
Confidence 0
Q ss_pred hhhhhcccccchhhhccccCCCCcccccccccccCCCCcccchhhhhcccccccCccchhhhhhHHHhhhhhhhhhhhhh
Q 007720 338 QQLALSTGQSTQFKHLLQCTPNNLVQTKTFHKTENQSPFQSAYNFVRNFTKSTVSPVIEYDRNTLIRHALAEKYDEIEDC 417 (591)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~e~l 417 (591)
..+.|+.
T Consensus 167 -------------------------------------------------------------------------~~~~~~~ 173 (326)
T COG0306 167 -------------------------------------------------------------------------KRKVERI 173 (326)
T ss_pred -------------------------------------------------------------------------chhHHHH
Confidence 0023568
Q ss_pred hhhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhcCcccCCCCCcccCcchhHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 007720 418 FSVPHLLASCIFALIQSVSEIAAIVSPYGAIVDIFNNRAKYSGNGEDVDSIDVSWWFRALGGLGAVMGFILCGWKLTQCL 497 (591)
Q Consensus 418 fs~LQVlsA~~~aFaHGaNDvANaigPlaai~~~~~~g~~~~~~~~~~~~~~~p~wi~~~g~~~i~~G~~~~G~rV~~Tv 497 (591)
|+.+|++|||++||+||+||++|++||++.+.. . ...|.|++++|++++++|++++|||||||+
T Consensus 174 ~r~l~i~sa~~~aF~hGaNdvanaiGpi~~~~~--~--------------~~~~~~v~~~g~~~i~lG~~~~g~Rvi~Tv 237 (326)
T COG0306 174 FRILLIISASLVAFAHGANDVANAIGPLVAVLI--S--------------SLPPFWVLVLGGIALALGTLTGGPRVIETV 237 (326)
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHhHHHHHh--h--------------ccccHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence 999999999999999999999999999998763 0 246899999999999999999999999999
Q ss_pred hcccccccCCchHHHHHHHHHHHHHHhhcCCccccccccccceeeeeecCCCcccchHHHHHHhHHhhhhHHHHHHHHHH
Q 007720 498 GGKLTYMSNSRGLASQLSTVAAVIIVSTTNLPVSTVHAFVGSLVGVGIADDIQNVNWKLLFKFICGWVMTIIFCCGAAFA 577 (591)
Q Consensus 498 G~~it~l~p~~gf~a~l~aa~~v~~as~~GlPVSTTh~ivgaviGvG~~~~~~~V~w~~~~~I~~~Wi~T~p~a~~~~~~ 577 (591)
|+||++|+|.|||++|+++++++.+||.+|+||||||+++|||+|+|++.+.+.|||+.+++|+.+|++|+|++++++++
T Consensus 238 G~kIt~L~p~~gfsA~~~sa~~v~~as~~GlPvStT~~~vgaI~GvG~~~~~~~v~~~~~~~Iv~aWvvT~p~a~~ls~~ 317 (326)
T COG0306 238 GKKITELTPSRGFSAQLSSAITVLLASLLGLPVSTTHTLVGAVLGVGLALAGGAVNWKVIKNIVLAWVVTLPAAALLSAL 317 (326)
T ss_pred hhhhcccCcchhHHHHHHHHHHHHHHHHcCCCcccceeeeeeeeecchhhccCceeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998878999999999999999999999999999
Q ss_pred HHHHHh
Q 007720 578 IFYASV 583 (591)
Q Consensus 578 l~~~~~ 583 (591)
+|....
T Consensus 318 ~~~~~~ 323 (326)
T COG0306 318 LYWLLL 323 (326)
T ss_pred HHHHHH
Confidence 998764
No 4
>COG0306 PitA Phosphate/sulphate permeases [Inorganic ion transport and metabolism]
Probab=99.81 E-value=7.1e-20 Score=191.88 Aligned_cols=145 Identities=24% Similarity=0.359 Sum_probs=124.7
Q ss_pred hhhHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhcCcccCCCCCcccCcch-hHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 007720 419 SVPHLLASCIFALIQSVSEIAAIVSPYGAIVDIFNNRAKYSGNGEDVDSIDV-SWWFRALGGLGAVMGFILCGWKLTQCL 497 (591)
Q Consensus 419 s~LQVlsA~~~aFaHGaNDvANaigPlaai~~~~~~g~~~~~~~~~~~~~~~-p~wi~~~g~~~i~~G~~~~G~rV~~Tv 497 (591)
-.+-++.+.+++|+-|+||++|++||... ++.+ +...+++.+++..+|.++.|.||++|+
T Consensus 5 ~~~~li~~l~~a~~iGand~ana~gtaVg-------------------s~alt~~~Av~laavf~f~Ga~l~g~~V~~TI 65 (326)
T COG0306 5 LVLALIAALFFAFNIGANDTANAVGTAVG-------------------SGALTPRQAVLLAAVFNFLGALLGGGNVAETI 65 (326)
T ss_pred HHHHHHHHHHHHHHhcccchhhhhhhhhc-------------------cCCccHHHHHHHHHHHHHHHHHHcCccHHHHH
Confidence 44567778999999999999999998532 1122 334456699999999999999999999
Q ss_pred hccccc-------ccCCchHHHHHHHHHHHHHHhhcCCccccccccccceeeeeecCCCcccchHHHHHHhHHhhhhHHH
Q 007720 498 GGKLTY-------MSNSRGLASQLSTVAAVIIVSTTNLPVSTVHAFVGSLVGVGIADDIQNVNWKLLFKFICGWVMTIIF 570 (591)
Q Consensus 498 G~~it~-------l~p~~gf~a~l~aa~~v~~as~~GlPVSTTh~ivgaviGvG~~~~~~~V~w~~~~~I~~~Wi~T~p~ 570 (591)
++++.+ +.|.--+++.+++++|+++++++|+|+||||+++|+++|+|++.+...++|+.+.+|+.+|+++|.+
T Consensus 66 ~~~iv~~~~~~~~~~~~~~~aaLlaa~~w~~ia~~~GiP~StshaiiGaiiG~gla~~~~~~~~~~~~~Iv~swvlsPii 145 (326)
T COG0306 66 GSGIVDPGLLNDSLTPAGVLAALLAAILWNLIATYLGIPVSTSHALIGAIIGAGLALGGGVVDWGVLGKIVASWVLSPIL 145 (326)
T ss_pred hcCCCCchhccchhhHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHHHHH
Confidence 999965 3456677889999999999999999999999999999999999753369999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 007720 571 CCGAAFAIFYAS 582 (591)
Q Consensus 571 a~~~~~~l~~~~ 582 (591)
+.++++++|...
T Consensus 146 ~~~ia~~l~~~~ 157 (326)
T COG0306 146 GGVLAYLLYSLL 157 (326)
T ss_pred HHHHHHHHHHHH
Confidence 999999988765
No 5
>PF01384 PHO4: Phosphate transporter family; InterPro: IPR001204 The PHO-4 family of transporters includes the phosphate-repressible phosphate permease (PHO-4) from Neurospora crassa which is probably a sodium-phosphate symporter []. This family also includes the human leukemia virus receptor.; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0006817 phosphate ion transport, 0016020 membrane
Probab=99.76 E-value=1.1e-18 Score=183.91 Aligned_cols=133 Identities=24% Similarity=0.359 Sum_probs=114.4
Q ss_pred hhhhhhhhhhhHHHHHHHHhcCcccCCCCCcccCcchhHHHHHHHHHHHHHHHHhhhhHHHHHHhcccccccCCc-----
Q 007720 434 SVSEIAAIVSPYGAIVDIFNNRAKYSGNGEDVDSIDVSWWFRALGGLGAVMGFILCGWKLTQCLGGKLTYMSNSR----- 508 (591)
Q Consensus 434 GaNDvANaigPlaai~~~~~~g~~~~~~~~~~~~~~~p~wi~~~g~~~i~~G~~~~G~rV~~TvG~~it~l~p~~----- 508 (591)
|+||++|++|+... . +.-.+...+++++++..+|.++.|.+|++|++++|.+.+...
T Consensus 2 GaND~an~~gt~Vg------s------------~al~~~~A~ila~i~~~lGa~l~G~~V~~ti~~~iv~~~~~~~~~~~ 63 (326)
T PF01384_consen 2 GANDAANSFGTAVG------S------------RALTPRQALILAAIFNFLGALLFGTAVAETIGKGIVDPSYFTVDDPQ 63 (326)
T ss_pred CccchHHHHHHHHh------c------------CccCHHHHHHHHHHHHHhHHHHhhHHHHHHHHhccccccccccccch
Confidence 89999999997543 1 112244566779999999999999999999999997665443
Q ss_pred -----hHHHHHHHHHHHHHHhhcCCccccccccccceeeeeecCC-CcccchH-HHHHHhHHhhhhHHHHHHHHHHHHHH
Q 007720 509 -----GLASQLSTVAAVIIVSTTNLPVSTVHAFVGSLVGVGIADD-IQNVNWK-LLFKFICGWVMTIIFCCGAAFAIFYA 581 (591)
Q Consensus 509 -----gf~a~l~aa~~v~~as~~GlPVSTTh~ivgaviGvG~~~~-~~~V~w~-~~~~I~~~Wi~T~p~a~~~~~~l~~~ 581 (591)
-+++-+++++++++++++|+|+||||+++|+++|+|++.+ .+.+||. .+.+|+.+|+++|.+++++++++|..
T Consensus 64 ~~~~~~~~al~~a~iw~~i~t~~glPvStThalvGal~G~~l~~~g~~~v~w~~~~~~I~~~wv~sPlia~~~a~~l~~~ 143 (326)
T PF01384_consen 64 ILMIGMLAALLAAAIWLLIATWLGLPVSTTHALVGALIGAGLASGGFSAVNWSKGLLKIVLSWVISPLIAFILAYILYRL 143 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667999999999999999999999999999999999985 6899999 69999999999999999999999987
Q ss_pred Hhh
Q 007720 582 SVH 584 (591)
Q Consensus 582 ~~~ 584 (591)
...
T Consensus 144 ~~~ 146 (326)
T PF01384_consen 144 IRR 146 (326)
T ss_pred HHH
Confidence 643
No 6
>KOG2493 consensus Na+/Pi symporter [Inorganic ion transport and metabolism]
Probab=99.70 E-value=4e-17 Score=175.31 Aligned_cols=146 Identities=18% Similarity=0.325 Sum_probs=125.0
Q ss_pred hhHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhcCcccCCCCCcccCcchhHHHHHH-HHHHHHHHHHhhhhHHHHHHh
Q 007720 420 VPHLLASCIFALIQSVSEIAAIVSPYGAIVDIFNNRAKYSGNGEDVDSIDVSWWFRAL-GGLGAVMGFILCGWKLTQCLG 498 (591)
Q Consensus 420 ~LQVlsA~~~aFaHGaNDvANaigPlaai~~~~~~g~~~~~~~~~~~~~~~p~wi~~~-g~~~i~~G~~~~G~rV~~TvG 498 (591)
.+|.+-|-+.+|+-|||||||+-|+ ++.+..+.+|+..+ .+++..+|..+.|++|.+|+.
T Consensus 29 ivg~i~afll~f~mGANDvaNsfgt-------------------SVgSgvltl~QA~iLAsife~lGsvl~G~~V~dt~r 89 (512)
T KOG2493|consen 29 IVGFIVAFLLAFGMGANDVANSFGT-------------------SVGSGVLTLKQAYILASIFETLGSVLLGASVTDTMR 89 (512)
T ss_pred HHHHHHHHHHhcccCcccccccccc-------------------ccccCceehHHHHHHHHHHHHHHHHHccchhhhhHH
Confidence 3566678899999999999999994 23344667777664 999999999999999999999
Q ss_pred cccccccCC---ch------HHHHHHHHHHHHHHhhcCCccccccccccceeeeeecC-CCcccchHHHHHHhHHhhhhH
Q 007720 499 GKLTYMSNS---RG------LASQLSTVAAVIIVSTTNLPVSTVHAFVGSLVGVGIAD-DIQNVNWKLLFKFICGWVMTI 568 (591)
Q Consensus 499 ~~it~l~p~---~g------f~a~l~aa~~v~~as~~GlPVSTTh~ivgaviGvG~~~-~~~~V~w~~~~~I~~~Wi~T~ 568 (591)
+.+.+.+-. .. .++..+++.|.++||.+++||||||++||+.+|.+++- +.+++.|..+.+|+.+|+++|
T Consensus 90 ~gVId~s~y~~~~~~lmlgqva~L~G~a~W~l~At~~~~PvSttHsiVgatigfs~~~~g~~Gi~w~~v~~iv~swfiSp 169 (512)
T KOG2493|consen 90 KGVIDFSIYNDTPKTLMLGQVAALFGSAAWLLVATFLKLPVSTTHSIVGATIGFSLVARGFNGIVWMEVIKIVASWFISP 169 (512)
T ss_pred hceeehHHhcCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCccceeeeeeheeeeeeeeccccceeehhhHHHHHHHhhhH
Confidence 998654322 22 24578899999999999999999999999999999874 789999999999999999999
Q ss_pred HHHHHHHHHHHHHHhh
Q 007720 569 IFCCGAAFAIFYASVH 584 (591)
Q Consensus 569 p~a~~~~~~l~~~~~~ 584 (591)
.++++++.++|.+.-+
T Consensus 170 ilsg~~s~ilf~~v~~ 185 (512)
T KOG2493|consen 170 ILSGIISAILFFLVDH 185 (512)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988754
No 7
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=62.72 E-value=27 Score=31.75 Aligned_cols=65 Identities=20% Similarity=0.109 Sum_probs=39.4
Q ss_pred HHHHHHHHHhhhhhhcCCccccccCC-CChhHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhHHHH--HHHHHHh
Q 007720 65 ASIMAGLIYVPGAALASNSTFIKENQ-PSEGFLMWSMVVVLITATIWLVIATYFELPVSPQQATQA--ALLGSML 136 (591)
Q Consensus 65 A~ilA~IfEflGAvllG~~V~~~~~~-~~p~vLmlGM~~al~~a~~wl~~aT~~~lPVStThsivG--aiiG~~l 136 (591)
-+++|.+||..|++.+-... ++. +-|.+ . ..+..+.+.+.+--...++|+|..+++=. +++|..+
T Consensus 6 ~L~~a~~~Ev~~~~~lK~s~---gf~~~~~~i---~-~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l 73 (110)
T PRK09541 6 YLGGAILAEVIGTTLMKFSE---GFTRLWPSV---G-TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISL 73 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhc---CCCchhHHH---H-HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHH
Confidence 47899999999998875543 221 22222 2 23334444444444457799999999854 4444443
No 8
>PRK11431 multidrug efflux system protein; Provisional
Probab=58.48 E-value=34 Score=30.90 Aligned_cols=60 Identities=18% Similarity=0.166 Sum_probs=37.0
Q ss_pred HHHHHHHHHhhhhhhcCCccccccCC-CChhHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHH
Q 007720 65 ASIMAGLIYVPGAALASNSTFIKENQ-PSEGFLMWSMVVVLITATIWLVIATYFELPVSPQQATQAAL 131 (591)
Q Consensus 65 A~ilA~IfEflGAvllG~~V~~~~~~-~~p~vLmlGM~~al~~a~~wl~~aT~~~lPVStThsivGai 131 (591)
-+++|.+||..|...+-... .+. ..|.+ .+.+..+.+.+++--...++|+|+..++=.++
T Consensus 5 ~L~~Ai~~Ev~~t~~Lk~s~---gf~~~~~~~----~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~Gi 65 (105)
T PRK11431 5 ILVIAGLLEVVWAVGLKYTH---GFSRLTPSI----ITVTAMIVSMALLAWAMKSLPVGTAYAVWTGI 65 (105)
T ss_pred HHHHHHHHHHHHHHHHHhhh---CCccHHHHH----HHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHH
Confidence 36889999999998774432 222 22222 22334444444444445689999999986643
No 9
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=57.19 E-value=39 Score=30.81 Aligned_cols=60 Identities=10% Similarity=-0.044 Sum_probs=37.5
Q ss_pred HHHHHHHHHhhhhhhcCCccccccCC-CChhHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHH
Q 007720 65 ASIMAGLIYVPGAALASNSTFIKENQ-PSEGFLMWSMVVVLITATIWLVIATYFELPVSPQQATQAAL 131 (591)
Q Consensus 65 A~ilA~IfEflGAvllG~~V~~~~~~-~~p~vLmlGM~~al~~a~~wl~~aT~~~lPVStThsivGai 131 (591)
-+++|.+||..|...+-... ++. +-|. ..++. ..+.+.+++--...++|+|++.++=.++
T Consensus 11 ~L~~Ai~~Ev~~t~~Lk~s~---gf~~~~~~---~~~~~-~~~~sf~~Ls~al~~lpvgvAYAvW~Gi 71 (109)
T PRK10650 11 WLALAIVLEIVANIFLKFSD---GFRRKIYG---ILSLA-AVLAAFSALSQAVKGIDLSVAYALWGGF 71 (109)
T ss_pred HHHHHHHHHHHHHHHHHHhc---CCcchHHH---HHHHH-HHHHHHHHHHHHHhhCchHHHHHHHHHH
Confidence 47899999999999885442 221 2222 22333 3334444444445689999999987665
No 10
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=54.14 E-value=41 Score=31.18 Aligned_cols=61 Identities=8% Similarity=0.025 Sum_probs=41.1
Q ss_pred HHHHHHHHHhhhhhhcCCccccccCCCChhHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHH
Q 007720 65 ASIMAGLIYVPGAALASNSTFIKENQPSEGFLMWSMVVVLITATIWLVIATYFELPVSPQQATQAAL 131 (591)
Q Consensus 65 A~ilA~IfEflGAvllG~~V~~~~~~~~p~vLmlGM~~al~~a~~wl~~aT~~~lPVStThsivGai 131 (591)
.+++|.++|..|+..+-.....+. ..+. ....++.+.+.+++.-...++|+|...++-.++
T Consensus 6 ~L~~Ai~~Ev~~t~~LK~s~g~~~--~~~~----~~~i~~~~~sf~~ls~al~~lplsiAYavw~Gi 66 (120)
T PRK10452 6 LLALAIATEITGTLSMKWASVSEG--NGGF----ILMLVMISLSYIFLSFAVKKIALGVAYALWEGI 66 (120)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCC--cHHH----HHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHH
Confidence 478999999999998865431111 1221 234456666777776677889999999986544
No 11
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=48.14 E-value=46 Score=30.37 Aligned_cols=60 Identities=18% Similarity=0.185 Sum_probs=40.9
Q ss_pred HHHHHHHHHhhhhhhcCCcc-ccccCCCChhHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHH
Q 007720 65 ASIMAGLIYVPGAALASNST-FIKENQPSEGFLMWSMVVVLITATIWLVIATYFELPVSPQQATQAAL 131 (591)
Q Consensus 65 A~ilA~IfEflGAvllG~~V-~~~~~~~~p~vLmlGM~~al~~a~~wl~~aT~~~lPVStThsivGai 131 (591)
-+++|.+||..|+..+=.+. +.+ ..|.++++.+. +.+.+++-=+.+.+|+|+..++=.++
T Consensus 6 ~L~lAi~~EV~~~~~lK~s~gf~~---~~~~il~~v~~----~~sf~~Ls~alk~ipvgvAYAiW~Gi 66 (106)
T COG2076 6 YLLLAILLEVVGTTLLKYSDGFTR---LWPSILTIVGY----GLSFYLLSLALKTIPLGVAYAIWTGI 66 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccc---cchHHHHHHHH----HHHHHHHHHHHhhCchHHHHHHHHHH
Confidence 46899999999998765442 222 34555555433 34556666667779999999987654
No 12
>PF14342 DUF4396: Domain of unknown function (DUF4396)
Probab=43.95 E-value=1.7e+02 Score=27.81 Aligned_cols=64 Identities=13% Similarity=0.068 Sum_probs=39.0
Q ss_pred CCchhHHHHHHHHHHhhhccccc--cccccccCCCCcCCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHhhccccHHHH
Q 007720 121 VSPQQATQAALLGSMLVTEGFDY--IPLWNKNDNHNFNGGGLLWIFLEWTVAPLFACMCACFLFILLKVLILRHKNARER 198 (591)
Q Consensus 121 VStThsivGaiiG~~l~~~G~~~--V~~W~~~~~~~~~~~~~~~I~~sW~isPi~~~~~a~~l~~~~~~~IL~r~n~~~~ 198 (591)
+||+|...|..+|--+..--... . .| .....|+++=+++.++++.++...=+ -+++-++++
T Consensus 8 ~~T~hC~aGC~lGdi~~~~~~~~~~~-g~--------------~~~~~~~l~~~la~~~gi~~~~~~l~--~~~~~~~~~ 70 (139)
T PF14342_consen 8 VATLHCLAGCTLGDIIGMWIVQATLL-GW--------------SMWAIMILAYALAFLFGIAFQYFPLM--PMRGLSYGR 70 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc-cc--------------cHHHHHHHHHHHHHHHHHHHHHHHHH--hhcCCCHHH
Confidence 58899988888776543221111 1 11 36678888888888888777655311 245556666
Q ss_pred HHH
Q 007720 199 ILI 201 (591)
Q Consensus 199 al~ 201 (591)
+++
T Consensus 71 al~ 73 (139)
T PF14342_consen 71 ALK 73 (139)
T ss_pred HHH
Confidence 655
No 13
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=43.38 E-value=2.2e+02 Score=29.52 Aligned_cols=82 Identities=13% Similarity=0.119 Sum_probs=47.5
Q ss_pred CCCccchhhcccCcccHHHHHHHHHHHHhhhhhhcCCccccccCCCChhHHHHHHHHHHHHHHHHHHHHHhhCCCCCchh
Q 007720 46 NLPAPFSTALGSGTLTLLKASIMAGLIYVPGAALASNSTFIKENQPSEGFLMWSMVVVLITATIWLVIATYFELPVSPQQ 125 (591)
Q Consensus 46 DvANsfgTsVGs~~lt~~qA~ilA~IfEflGAvllG~~V~~~~~~~~p~vLmlGM~~al~~a~~wl~~aT~~~lPVStTh 125 (591)
|.-|.=.=.+-||.++.|||..++.++-.+|.. ++... ++..+.++..+.++ .++--...++.+ .--|
T Consensus 65 D~~~~~~Rpl~sG~is~~~a~~~~~~l~~~~~~-l~~~l-------~~~~~~l~~~~~~~---~~~Ys~~lKr~~-~~~~ 132 (279)
T PRK09573 65 DKINKPERPIPSGRISLKEAKIFSITLFIVGLI-LSIFI-------NIYAFLIALLNSIL---LYLYAKDLKKTG-LIGN 132 (279)
T ss_pred ccccCCCCCcCCCccCHHHHHHHHHHHHHHHHH-HHHHH-------hHHHHHHHHHHHHH---HHHHHHHHhcCC-cHHH
Confidence 333443345679999999999999999888774 33321 22334444444332 121111122211 1248
Q ss_pred HHHHHHHHHHhhhc
Q 007720 126 ATQAALLGSMLVTE 139 (591)
Q Consensus 126 sivGaiiG~~l~~~ 139 (591)
.++|.+.|.....+
T Consensus 133 ~~vg~~~G~~~~~g 146 (279)
T PRK09573 133 LIVAYLTGLSFIFG 146 (279)
T ss_pred HHHHHHHHHHHHHH
Confidence 89999999986654
No 14
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=38.44 E-value=1e+02 Score=26.85 Aligned_cols=59 Identities=20% Similarity=0.142 Sum_probs=26.6
Q ss_pred HHHHHHHHHhhhhhhcCCcc-ccccCCCChhHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhHHHHH
Q 007720 65 ASIMAGLIYVPGAALASNST-FIKENQPSEGFLMWSMVVVLITATIWLVIATYFELPVSPQQATQAA 130 (591)
Q Consensus 65 A~ilA~IfEflGAvllG~~V-~~~~~~~~p~vLmlGM~~al~~a~~wl~~aT~~~lPVStThsivGa 130 (591)
.+++|.++|..|...+-... +.+ ..| ..++++ ..+.+........+++|+|...++--+
T Consensus 5 ~L~~a~~~ev~~~~~lK~s~g~~~---~~~---~~~~~~-~~~~s~~~l~~al~~lp~~vaYavw~g 64 (93)
T PF00893_consen 5 FLLLAILFEVVGTIALKASHGFTQ---LIP---TILAVV-GYGLSFYFLSLALKKLPLSVAYAVWTG 64 (93)
T ss_dssp HHHHHHHHHHHHHHH--------------------HHHH-HHHHHHHHHHHHH-------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc---hhh---HHHHHH-HHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 46889999999999886643 111 122 223332 344444555556667999999998653
No 15
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=32.90 E-value=1.3e+02 Score=27.13 Aligned_cols=64 Identities=14% Similarity=0.152 Sum_probs=34.4
Q ss_pred HHHHHHHHhhhhhhcCCccc--cccCCCChhHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhHHHH
Q 007720 66 SIMAGLIYVPGAALASNSTF--IKENQPSEGFLMWSMVVVLITATIWLVIATYFELPVSPQQATQA 129 (591)
Q Consensus 66 ~ilA~IfEflGAvllG~~V~--~~~~~~~p~vLmlGM~~al~~a~~wl~~aT~~~lPVStThsivG 129 (591)
+++|.++|..|.+++-.... ..++.+.+.+.-++......+.+..+..-...++|+|..+.+..
T Consensus 6 l~~ai~~ev~g~~~lK~s~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~ 71 (111)
T PRK15051 6 LVFASLLSVAGQLCQKQATRPVAIGKRRKHIVLWLGLALACLGLAMVLWLLVLQNVPVGIAYPMLS 71 (111)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHH
Confidence 67899999999998866531 11222222122233222233334444444445689988776543
No 16
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=25.74 E-value=3.5e+02 Score=30.92 Aligned_cols=64 Identities=13% Similarity=-0.001 Sum_probs=43.3
Q ss_pred chhhhhhhhhhhhHHHHHHHHHHHHHHHHhhccccHHHHHHHHhhHHHHHHHHHHHHHHHhhhcCc
Q 007720 160 LLWIFLEWTVAPLFACMCACFLFILLKVLILRHKNARERILIFFPVDYGLSAGLLCLFLVYRVRGH 225 (591)
Q Consensus 160 ~~~I~~sW~isPi~~~~~a~~l~~~~~~~IL~r~n~~~~al~~~Pi~~~lt~~i~~~~iv~kg~~~ 225 (591)
+...++.++++-+++|.+|.-+|+..+-- --+++.. ..-..+|...+++..++.++...+++..
T Consensus 299 ~t~~i~~y~~~~~iaGy~S~~~yk~~~g~-~W~~~~~-lt~~~~P~~~~~~~~~~n~i~~~~~ss~ 362 (521)
T PF02990_consen 299 LTAAIILYALTSFIAGYVSARLYKSFGGK-KWKKNSI-LTSLLFPGILFSIFFILNFIAWSYGSSS 362 (521)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHcCCC-ceeehhh-HHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 45678899999999999999999887432 1112222 2234778888777777776666665544
No 17
>TIGR03113 exosortase_2 exosortase 2. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. We designate this relatively uncommon proteobacterial type to be type 2. We propose the gene symbol xrtB. Most species encountered so far with xrtB also contain xrtA (TIGR03109).
Probab=24.95 E-value=2.5e+02 Score=29.64 Aligned_cols=53 Identities=21% Similarity=0.291 Sum_probs=38.2
Q ss_pred HHhhhhHHHHHHhccccc---ccCCchHH--------HHHHHHHHHHHHhhcCCcccccccccc
Q 007720 486 FILCGWKLTQCLGGKLTY---MSNSRGLA--------SQLSTVAAVIIVSTTNLPVSTVHAFVG 538 (591)
Q Consensus 486 ~~~~G~rV~~TvG~~it~---l~p~~gf~--------a~l~aa~~v~~as~~GlPVSTTh~ivg 538 (591)
.+..|+|..|...-.+.- +-|..++. .+++|.++..+-...|+||.-.....=
T Consensus 100 l~~~G~~~~r~~~fPL~~Llf~vP~p~~l~~~lt~pLq~~~s~~a~~~L~~~Gipv~reG~~i~ 163 (268)
T TIGR03113 100 LITRGWRALRALWFPLFFLLFMIPLPGFVVDALTLPMKQAVSYVAEQILYWAGYPIARSGVILQ 163 (268)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHcCCcHHHHhhhHHHHHHHHHHHHHHHHHHcCCCEEEeeeEEE
Confidence 577899999999988743 35554442 245666777778899999998766553
No 18
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=24.49 E-value=6.1e+02 Score=26.38 Aligned_cols=25 Identities=16% Similarity=0.149 Sum_probs=21.4
Q ss_pred hcccCcccHHHHHHHHHHHHhhhhh
Q 007720 54 ALGSGTLTLLKASIMAGLIYVPGAA 78 (591)
Q Consensus 54 sVGs~~lt~~qA~ilA~IfEflGAv 78 (591)
..=||.+|.+||.+.+.++-.+|..
T Consensus 80 Pl~sG~is~~~a~~~~~~l~~~~~~ 104 (282)
T PRK12848 80 PLASGAVSEKEALALFVVLVLVAFL 104 (282)
T ss_pred CCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 4568999999999999998888764
No 19
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=24.41 E-value=1.3e+02 Score=26.17 Aligned_cols=61 Identities=20% Similarity=0.132 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHhcccccccCCchHHHHHHHHHHHHHHhhcCCcccccccccc
Q 007720 472 WWFRALGGLGAVMGFILCGWKLTQCLGGKLTYMSNSRGLASQLSTVAAVIIVSTTNLPVSTVHAFVG 538 (591)
Q Consensus 472 ~wi~~~g~~~i~~G~~~~G~rV~~TvG~~it~l~p~~gf~a~l~aa~~v~~as~~GlPVSTTh~ivg 538 (591)
|..++++++..+.|....-+ .++.++..|.-+...-.+.+...+....-.+|+|..+.+-.
T Consensus 3 wl~L~~a~~~ev~~~~~lK~------s~g~~~~~~~~~~~~~~~~s~~~l~~al~~lp~~vaYavw~ 63 (93)
T PF00893_consen 3 WLFLLLAILFEVVGTIALKA------SHGFTQLIPTILAVVGYGLSFYFLSLALKKLPLSVAYAVWT 63 (93)
T ss_dssp -HHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHH-------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH------HHhhcchhhHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 34455577788888776644 55567777887777767777777777778899999998754
No 20
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=24.04 E-value=7.9e+02 Score=26.12 Aligned_cols=25 Identities=12% Similarity=0.017 Sum_probs=18.1
Q ss_pred hcccCcccHHHHHHHHHHHHhhhhhh
Q 007720 54 ALGSGTLTLLKASIMAGLIYVPGAAL 79 (591)
Q Consensus 54 sVGs~~lt~~qA~ilA~IfEflGAvl 79 (591)
.+=||.+|.+||.++. +.-+++.++
T Consensus 87 Pl~sG~is~~~A~~~~-~~~~~~~~~ 111 (300)
T PRK13106 87 PLVTGAIKISEAKALI-TAGLILFFA 111 (300)
T ss_pred CCCCCCcCHHHHHHHH-HHHHHHHHH
Confidence 4568999999999885 555555443
No 21
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=23.43 E-value=2.8e+02 Score=26.97 Aligned_cols=54 Identities=15% Similarity=0.279 Sum_probs=27.5
Q ss_pred HHHHHHHHhhccccHHHHHHHHhhHHHHHHHHHHHHHHHhhhcCcccccchHHHHHHHHHHHHHHH
Q 007720 181 LFILLKVLILRHKNARERILIFFPVDYGLSAGLLCLFLVYRVRGHLVHIPRWVTIAAVALATFIGA 246 (591)
Q Consensus 181 l~~~~~~~IL~r~n~~~~al~~~Pi~~~lt~~i~~~~iv~kg~~~l~~~~~w~~~~~~~~~~~i~~ 246 (591)
..+++|+..+.. .+|.+.++.+++...+++- .+..++|.|...+...+..++++
T Consensus 58 s~RM~rRm~~~~---------GiP~~lG~~~f~~~y~l~~---~~~~dvP~~~~~~~S~~~Fg~gl 111 (153)
T PF11947_consen 58 SNRMLRRMAVFV---------GIPTALGVAVFVVFYYLKS---RQIVDVPPWAVLLVSLVFFGLGL 111 (153)
T ss_pred HHHHHHHHHHHh---------chHHHHHHHHHHHHHHHHh---ccccccCchHHHHHHHHHHHHHH
Confidence 345555554433 3444444443333333322 23457888977766665555543
No 22
>TIGR03480 HpnN hopanoid biosynthesis associated RND transporter like protein HpnN. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins appear to be related to the RND family of export proteins, particularly the hydrophobe/amphiphile efflux-3 (HAE3) family represented by TIGR00921.
Probab=23.39 E-value=1.2e+03 Score=28.26 Aligned_cols=51 Identities=10% Similarity=-0.117 Sum_probs=28.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhc-c-c---cHHHHHHH--HhhHHHHHHHHHHHHHHH
Q 007720 169 VAPLFACMCACFLFILLKVLILR-H-K---NARERILI--FFPVDYGLSAGLLCLFLV 219 (591)
Q Consensus 169 isPi~~~~~a~~l~~~~~~~IL~-r-~---n~~~~al~--~~Pi~~~lt~~i~~~~iv 219 (591)
..-++|..+.+.++.+.|+.=.+ + + ++.+++.+ .-|+++...+.+..|+.+
T Consensus 329 ~~lliGi~vD~~I~~~~r~~e~~~~g~~~~~A~~~a~~~~~~~i~~s~lTt~~gf~~l 386 (862)
T TIGR03480 329 AVLFIGLGVDFAIQFSLRYREERFRGGNHREALSVAARRMGAALLLAALATAAGFFAF 386 (862)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456888888888877654322 1 1 22233333 567777766666666433
No 23
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=23.31 E-value=1.4e+02 Score=27.24 Aligned_cols=85 Identities=12% Similarity=0.008 Sum_probs=54.1
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhHHHHHHhcccccccCCchHHHHHHHHHHHHHHhhcCCccccccccccce--eeeeecC
Q 007720 470 VSWWFRALGGLGAVMGFILCGWKLTQCLGGKLTYMSNSRGLASQLSTVAAVIIVSTTNLPVSTVHAFVGSL--VGVGIAD 547 (591)
Q Consensus 470 ~p~wi~~~g~~~i~~G~~~~G~rV~~TvG~~it~l~p~~gf~a~l~aa~~v~~as~~GlPVSTTh~ivgav--iGvG~~~ 547 (591)
.++..++++++++..|+...- ..++.++.-|.-....-.+.+...+--+.-.+|+|++.++=.++ +|+-+..
T Consensus 7 ~~~~~L~~Ai~~Ev~~t~~Lk------~s~gf~~~~~~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig 80 (109)
T PRK10650 7 IHAAWLALAIVLEIVANIFLK------FSDGFRRKIYGILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAG 80 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HhcCCcchHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHH
Confidence 455566678899999988763 23556677776666666666666666666799999999985543 2222222
Q ss_pred ---CCcccchHHHHHH
Q 007720 548 ---DIQNVNWKLLFKF 560 (591)
Q Consensus 548 ---~~~~V~w~~~~~I 560 (591)
-.+..+|..+.-|
T Consensus 81 ~~~f~e~~~~~~~~gi 96 (109)
T PRK10650 81 WILFGQRLNRKGWIGL 96 (109)
T ss_pred HHHcCCCCCHHHHHHH
Confidence 2356666554433
No 24
>PF14147 Spore_YhaL: Sporulation protein YhaL
Probab=23.17 E-value=74 Score=25.48 Aligned_cols=25 Identities=20% Similarity=0.691 Sum_probs=19.6
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhHHHHHHhc
Q 007720 470 VSWWFRALGGLGAVMGFILCGWKLTQCLGG 499 (591)
Q Consensus 470 ~p~wi~~~g~~~i~~G~~~~G~rV~~TvG~ 499 (591)
+|||+.++ .+|+++-|+..++|.-+
T Consensus 1 ~PwWvY~v-----i~gI~~S~ym~v~t~~e 25 (52)
T PF14147_consen 1 IPWWVYFV-----IAGIIFSGYMAVKTAKE 25 (52)
T ss_pred CcchHHHH-----HHHHHHHHHHHHHHHHH
Confidence 48998765 56788889999999764
No 25
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=23.04 E-value=1.4e+02 Score=27.08 Aligned_cols=80 Identities=14% Similarity=0.089 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHhcccccccCCchHHHHHHHHHHHHHHhhcCCcccccccccc--ceeeeeecC---CC
Q 007720 475 RALGGLGAVMGFILCGWKLTQCLGGKLTYMSNSRGLASQLSTVAAVIIVSTTNLPVSTVHAFVG--SLVGVGIAD---DI 549 (591)
Q Consensus 475 ~~~g~~~i~~G~~~~G~rV~~TvG~~it~l~p~~gf~a~l~aa~~v~~as~~GlPVSTTh~ivg--aviGvG~~~---~~ 549 (591)
++++++++..|+...- ..++.++.-|.-...+-.+.+...+.-..-.+|+|..+++=. +++|+-+.. -.
T Consensus 7 L~~a~~~Ev~~~~~lK------~s~gf~~~~~~i~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~ 80 (110)
T PRK09541 7 LGGAILAEVIGTTLMK------FSEGFTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFG 80 (110)
T ss_pred HHHHHHHHHHHHHHHH------HhcCCCchhHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhC
Confidence 4457888898887553 235566777776777777777777766777899999999843 333332222 23
Q ss_pred cccchHHHHHH
Q 007720 550 QNVNWKLLFKF 560 (591)
Q Consensus 550 ~~V~w~~~~~I 560 (591)
+..||..+.-|
T Consensus 81 e~~~~~~~~gi 91 (110)
T PRK09541 81 QRLDLPAIIGM 91 (110)
T ss_pred CCCCHHHHHHH
Confidence 56666655443
No 26
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=22.70 E-value=5.5e+02 Score=25.47 Aligned_cols=16 Identities=13% Similarity=0.405 Sum_probs=6.6
Q ss_pred hhhHHHHHHHHHHHHH
Q 007720 170 APLFACMCACFLFILL 185 (591)
Q Consensus 170 sPi~~~~~a~~l~~~~ 185 (591)
..+++|++=+.+|+.+
T Consensus 119 ~~i~~G~~~~~~~~~i 134 (206)
T PF06570_consen 119 VSIVGGLVFYFIFKYI 134 (206)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444443
No 27
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=22.16 E-value=3.4e+02 Score=28.75 Aligned_cols=26 Identities=27% Similarity=0.215 Sum_probs=22.6
Q ss_pred hcccCcccHHHHHHHHHHHHhhhhhh
Q 007720 54 ALGSGTLTLLKASIMAGLIYVPGAAL 79 (591)
Q Consensus 54 sVGs~~lt~~qA~ilA~IfEflGAvl 79 (591)
.+-||.+|.|||..++.++-++|..+
T Consensus 88 pl~sG~is~~~a~~~~i~l~~i~~~l 113 (297)
T PRK12871 88 PIPSGKLSSKNAFALFILLAAVTSAL 113 (297)
T ss_pred ccCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 44789999999999999999988755
No 28
>PF05106 Phage_holin_3: Phage holin family (Lysis protein S); InterPro: IPR006481 This entry is represented by the Bacteriophage lambda, GpS. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. Holins act against the host cell membrane to allow lytic enzymes of the phage to reach the bacterial cell wall. This family includes the product of the S gene of phage lambda.
Probab=20.78 E-value=91 Score=27.91 Aligned_cols=44 Identities=25% Similarity=0.377 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHhhhcccccc
Q 007720 95 FLMWSMVVVLITATIWLVIATYFELPVSPQQATQAALLGSMLVTEGFDYI 144 (591)
Q Consensus 95 vLmlGM~~al~~a~~wl~~aT~~~lPVStThsivGaiiG~~l~~~G~~~V 144 (591)
.+.=+.+|++++-++--.+ .++|+|.|-+- ++|+.||+- |.+.+
T Consensus 46 ~llea~lCg~lal~~~~~L-~~~gl~~~~a~-~~g~~IGfl----Gvd~i 89 (100)
T PF05106_consen 46 RLLEALLCGLLALFARSLL-EYFGLPQSLAV-FIGGFIGFL----GVDKI 89 (100)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHhCCChhhhh-hheeeeecc----CHHHH
Confidence 4555777777765555444 79999988664 667777753 55544
No 29
>PRK11431 multidrug efflux system protein; Provisional
Probab=20.18 E-value=1.7e+02 Score=26.36 Aligned_cols=60 Identities=17% Similarity=0.133 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHhcccccccCCchHHHHHHHHHHHHHHhhcCCccccccccccc
Q 007720 474 FRALGGLGAVMGFILCGWKLTQCLGGKLTYMSNSRGLASQLSTVAAVIIVSTTNLPVSTVHAFVGS 539 (591)
Q Consensus 474 i~~~g~~~i~~G~~~~G~rV~~TvG~~it~l~p~~gf~a~l~aa~~v~~as~~GlPVSTTh~ivga 539 (591)
.++++++++.+|+...-+ .++-++.-|.-....-.+.+...+.-+.-.+|+|+++++=++
T Consensus 5 ~L~~Ai~~Ev~~t~~Lk~------s~gf~~~~~~~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~G 64 (105)
T PRK11431 5 ILVIAGLLEVVWAVGLKY------THGFSRLTPSIITVTAMIVSMALLAWAMKSLPVGTAYAVWTG 64 (105)
T ss_pred HHHHHHHHHHHHHHHHHh------hhCCccHHHHHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHH
Confidence 344588889999876532 344566666666666667777766666779999999997553
Done!