Query 007720
Match_columns 591
No_of_seqs 191 out of 1188
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 08:49:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007720.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007720hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dx5_A Acriflavine resistance 57.5 1.6E+02 0.0055 34.6 15.9 87 172-261 934-1029(1057)
2 3iyz_A Aquaporin-4; water tran 51.4 1.3E+02 0.0045 31.3 12.2 18 168-185 251-268 (340)
3 2zz9_A Aquaporin-4; water tran 39.7 1.3E+02 0.0045 30.6 9.9 18 168-185 212-229 (301)
4 2jln_A MHP1; hydantoin, transp 33.9 56 0.0019 35.3 6.4 127 30-188 297-447 (501)
5 2v50_A Multidrug resistance pr 26.6 4.6E+02 0.016 30.7 13.1 87 172-261 933-1027(1052)
6 1j4n_A Aquaporin 1; membrane p 25.7 1.7E+02 0.0058 29.2 7.9 18 168-185 215-232 (271)
7 3b5d_A Multidrug transporter E 14.1 3E+02 0.01 23.2 5.9 57 65-127 6-62 (110)
8 3ne5_A Cation efflux system pr 11.1 1.8E+03 0.06 25.7 14.8 20 201-220 987-1006(1054)
9 3l1l_A Arginine/agmatine antip 10.6 6.8E+02 0.023 25.2 8.3 9 187-195 372-380 (445)
10 2bru_C NAD(P) transhydrogenase 9.9 70 0.0024 30.4 0.4 9 42-50 112-120 (186)
No 1
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=57.49 E-value=1.6e+02 Score=34.63 Aligned_cols=87 Identities=10% Similarity=0.018 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHHHHH--HHhhccccHHHHH------HHHhhHHHHHHHHHHHHHHHhhhcCcccccchHHHH-HHHHHHH
Q 007720 172 LFACMCACFLFILLK--VLILRHKNARERI------LIFFPVDYGLSAGLLCLFLVYRVRGHLVHIPRWVTI-AAVALAT 242 (591)
Q Consensus 172 i~~~~~a~~l~~~~~--~~IL~r~n~~~~a------l~~~Pi~~~lt~~i~~~~iv~kg~~~l~~~~~w~~~-~~~~~~~ 242 (591)
++|..+=+.++.+-| +..+++..+.+.| .+.-|+++...+.+..|.-+.-..+. ..+.+... ....+++
T Consensus 934 l~Gi~vd~~I~lv~~~~~~~~~~g~~~~~Ai~~a~~~~~rpil~t~ltt~~g~~pl~~~~g~--g~~~~~~~g~~~~~Gl 1011 (1057)
T 4dx5_A 934 TIGLSAKNAILIVEFAKDLMDKEGKGLIEATLDAVRMRLRPILMTSLAFILGVMPLVISTGA--GSGAQNAVGTGVMGGM 1011 (1057)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTCCST--THHHHHHHHHHHHHHH
T ss_pred HHHHHHcCeEEEehHHhHHHHHcCCCHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhcCC--chhhhcccHHHHHHHH
Confidence 445555566655543 3322332232222 23678887776666666544432211 01223222 2233333
Q ss_pred HHHHHhhhhhhhhhhhhhc
Q 007720 243 FIGAVLPLVVIVPLATKEL 261 (591)
Q Consensus 243 ~i~~~l~~~~~vP~~~~~~ 261 (591)
.++. +.-++++|.+...+
T Consensus 1012 ~~s~-~~tl~~~P~l~~~~ 1029 (1057)
T 4dx5_A 1012 VTAT-VLAIFFVPVFFVVV 1029 (1057)
T ss_dssp HHHH-HHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHH
Confidence 3333 34455678765433
No 2
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=51.43 E-value=1.3e+02 Score=31.26 Aligned_cols=18 Identities=22% Similarity=0.357 Sum_probs=15.9
Q ss_pred hhhhhHHHHHHHHHHHHH
Q 007720 168 TVAPLFACMCACFLFILL 185 (591)
Q Consensus 168 ~isPi~~~~~a~~l~~~~ 185 (591)
++.|+++++++.++|.++
T Consensus 251 wvgPiiGailaallY~~l 268 (340)
T 3iyz_A 251 WVGPIIGAVLAGALYEYV 268 (340)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 489999999999999775
No 3
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A
Probab=39.68 E-value=1.3e+02 Score=30.63 Aligned_cols=18 Identities=22% Similarity=0.357 Sum_probs=15.8
Q ss_pred hhhhhHHHHHHHHHHHHH
Q 007720 168 TVAPLFACMCACFLFILL 185 (591)
Q Consensus 168 ~isPi~~~~~a~~l~~~~ 185 (591)
++.|+++++++.++|..+
T Consensus 212 ~vgPiiGailaa~ly~~l 229 (301)
T 2zz9_A 212 WVGPIIGAVLAGALYEYV 229 (301)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred eeHHHHHHHHHHHHHHHH
Confidence 579999999999999764
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=33.93 E-value=56 Score=35.26 Aligned_cols=127 Identities=12% Similarity=0.012 Sum_probs=0.0
Q ss_pred HHHHHH-HHHHHhc-ccCCCCccchhh-----cccCcccHHHHHHHHHHHHhhhhhhcCCccccccCCCChhHHHHHHHH
Q 007720 30 LGGFAA-FAMAFSA-GANNLPAPFSTA-----LGSGTLTLLKASIMAGLIYVPGAALASNSTFIKENQPSEGFLMWSMVV 102 (591)
Q Consensus 30 ~~~i~A-~~~a~~i-GANDvANsfgTs-----VGs~~lt~~qA~ilA~IfEflGAvllG~~V~~~~~~~~p~vLmlGM~~ 102 (591)
++.+.. +.+..+. +.|+.+|..+.+ ...+.++.|+..++.++.-++-+...-...+.+ -+.++|
T Consensus 297 ~~~~~~~~~~~la~i~tn~~~n~ys~~~~l~~~~~~~i~~~~~~~i~~vi~~~i~~~~~~~~f~~------FL~~lg--- 367 (501)
T 2jln_A 297 PMAILFQVFVLLATWSTNPAANLLSPAYTLCSTFPRVFTFKTGVIVSAVVGLLMMPWQFAGVLNT------FLNLLA--- 367 (501)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHTHHHHHHHHHHSTTTCCHHHHHHHHHHHHHHTCGGGTHHHHHH------HHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhCccccchhHHHHHHHHHHHHHHHHHhHHHHHH------HHHHHH---
Q ss_pred HHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHH-----hhhccccccccccccCC-----CCcCCCcchhhhhhhh----
Q 007720 103 VLITATIWLVIATYFELPVSPQQATQAALLGSM-----LVTEGFDYIPLWNKNDN-----HNFNGGGLLWIFLEWT---- 168 (591)
Q Consensus 103 al~~a~~wl~~aT~~~lPVStThsivGaiiG~~-----l~~~G~~~V~~W~~~~~-----~~~~~~~~~~I~~sW~---- 168 (591)
..++++.|.. +..++.-.+.+|.+.+. ..|||.++.-.+++.+
T Consensus 368 -----------------------~~l~P~~gI~l~Dy~i~rr~~~~~~~l~~~~g~y~y~~g~n~~a~~a~~~G~~~~~~ 424 (501)
T 2jln_A 368 -----------------------SALGPLAGIMISDYFLVRRRRISLHDLYRTKGIYTYWRGVNWVALAVYAVALAVSFL 424 (501)
T ss_dssp -----------------------HTTHHHHHHHHHHHHTTSTTCCCHHHHTBSSSTTCTBTTBCHHHHHHHHHHHHHHHT
T ss_pred -----------------------HHHHHHHHHHHHHHHhhhcccCChHHhhCCCCccccCCCCCHHHHHHHHHHHHHHHH
Q ss_pred ---hhhhHHHHHHHHHHHHHHHH
Q 007720 169 ---VAPLFACMCACFLFILLKVL 188 (591)
Q Consensus 169 ---isPi~~~~~a~~l~~~~~~~ 188 (591)
++++.+.++++++|.++++.
T Consensus 425 ~~~~~~~~g~~va~v~Y~~l~~~ 447 (501)
T 2jln_A 425 TPDLMFVTGLIAALLLHIPAMRW 447 (501)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHHHHh
No 5
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}
Probab=26.64 E-value=4.6e+02 Score=30.72 Aligned_cols=87 Identities=13% Similarity=0.024 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHHHHHHHhhccc--cH---HHHH--HHHhhHHHHHHHHHHHHHHHhhhcCcccccchHHHH-HHHHHHHH
Q 007720 172 LFACMCACFLFILLKVLILRHK--NA---RERI--LIFFPVDYGLSAGLLCLFLVYRVRGHLVHIPRWVTI-AAVALATF 243 (591)
Q Consensus 172 i~~~~~a~~l~~~~~~~IL~r~--n~---~~~a--l~~~Pi~~~lt~~i~~~~iv~kg~~~l~~~~~w~~~-~~~~~~~~ 243 (591)
++|..+=+.++.+-|.--.+++ ++ ..++ .+.-|+++...+.+..|.-+.-..+. .-+.+... ...+++..
T Consensus 933 l~Gi~vd~~I~lv~~~~~~~~~g~~~~~Ai~~a~~~~~rpil~t~~tt~~g~~pl~~~~~~--g~~~~~~~~~~~~~Gl~ 1010 (1052)
T 2v50_A 933 TIGLSAKNAILIVEFAKELHEQGKGIVEAAIEACRMRLRPIVMTSLAFILGVVPLAISTGA--GSGSQHAIGTGVIGGMV 1010 (1052)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHTCCST--TTTHHHHHHHHHHHHHH
T ss_pred HHHHHHcCeEEEeehHHHHHHcCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCC--ChhhhcccHHHHHHHHH
Confidence 4555566666655443323321 22 2222 24678777665555555433322110 00122222 22233333
Q ss_pred HHHHhhhhhhhhhhhhhc
Q 007720 244 IGAVLPLVVIVPLATKEL 261 (591)
Q Consensus 244 i~~~l~~~~~vP~~~~~~ 261 (591)
++. +.-++++|.+...+
T Consensus 1011 ~s~-~~~l~~~P~l~~~~ 1027 (1052)
T 2v50_A 1011 TAT-VLAIFWVPLFYVAV 1027 (1052)
T ss_dssp HHH-HHHHHHHHHHTC--
T ss_pred HHH-HHHHHHHHHHHHHH
Confidence 333 34456688765443
No 6
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A
Probab=25.68 E-value=1.7e+02 Score=29.16 Aligned_cols=18 Identities=17% Similarity=0.429 Sum_probs=15.7
Q ss_pred hhhhhHHHHHHHHHHHHH
Q 007720 168 TVAPLFACMCACFLFILL 185 (591)
Q Consensus 168 ~isPi~~~~~a~~l~~~~ 185 (591)
++.|+++++++.++|..+
T Consensus 215 ~vgP~~Ga~la~~~y~~~ 232 (271)
T 1j4n_A 215 WVGPFIGAALAVLIYDFI 232 (271)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 479999999999999764
No 7
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=14.09 E-value=3e+02 Score=23.23 Aligned_cols=57 Identities=21% Similarity=0.089 Sum_probs=32.9
Q ss_pred HHHHHHHHHhhhhhhcCCccccccCCCChhHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhHH
Q 007720 65 ASIMAGLIYVPGAALASNSTFIKENQPSEGFLMWSMVVVLITATIWLVIATYFELPVSPQQAT 127 (591)
Q Consensus 65 A~ilA~IfEflGAvllG~~V~~~~~~~~p~vLmlGM~~al~~a~~wl~~aT~~~lPVStThsi 127 (591)
.+++|.++|..|.+++-... ++...+. ...+.++. +.+.++....+..+|+|....+
T Consensus 6 ~l~~a~~~e~~~~~~lK~s~---~~~~~~~-~~~~~~~~--~~~~~~~~~al~~~p~s~ay~i 62 (110)
T 3b5d_A 6 YLGGAILAEVIGTTLMKFSE---GFTRLWP-SVGTIICY--CASFWLLAQTLAYIPTGIAYAI 62 (110)
T ss_pred HHHHHHHHHHHHHHHHHhcc---CcchHHH-HHHHHHHH--HHHHHHHHHHHHhCChhhHHHH
Confidence 46779999999998875542 2222221 23333332 3333344446778999987765
No 8
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A 3kso_A 3kss_A 3t53_A 3t51_A 3t56_A 4dop_A 4dnt_A
Probab=11.08 E-value=1.8e+03 Score=25.66 Aligned_cols=20 Identities=10% Similarity=0.064 Sum_probs=12.9
Q ss_pred HHhhHHHHHHHHHHHHHHHh
Q 007720 201 IFFPVDYGLSAGLLCLFLVY 220 (591)
Q Consensus 201 ~~~Pi~~~lt~~i~~~~iv~ 220 (591)
+.-|+++...+.+..|.-+.
T Consensus 987 ~~rpil~t~ltti~g~~pl~ 1006 (1054)
T 3ne5_A 987 RVRPKAMTVAVIIAGLLPIL 1006 (1054)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHH
Confidence 46788877766666664443
No 9
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=10.58 E-value=6.8e+02 Score=25.20 Aligned_cols=9 Identities=33% Similarity=0.571 Sum_probs=5.8
Q ss_pred HHhhccccH
Q 007720 187 VLILRHKNA 195 (591)
Q Consensus 187 ~~IL~r~n~ 195 (591)
...+|+++|
T Consensus 372 ~~~~r~~~~ 380 (445)
T 3l1l_A 372 LLLLGHGHF 380 (445)
T ss_dssp HHHHHSSSS
T ss_pred HHHHhhcCc
Confidence 455677776
No 10
>2bru_C NAD(P) transhydrogenase subunit beta; paramagnetic transhydrogenase, inner membrane, membrane, oxidoreductase, transmembrane; HET: NAD NAP; NMR {Escherichia coli}
Probab=9.89 E-value=70 Score=30.43 Aligned_cols=9 Identities=44% Similarity=0.682 Sum_probs=3.4
Q ss_pred cccCCCCcc
Q 007720 42 AGANNLPAP 50 (591)
Q Consensus 42 iGANDvANs 50 (591)
|||||+-|+
T Consensus 112 IGANDvVNP 120 (186)
T 2bru_C 112 IGANDTVNP 120 (186)
T ss_dssp CBCGGGGCG
T ss_pred eccccccCc
Confidence 333333333
Done!