Query 007720
Match_columns 591
No_of_seqs 191 out of 1188
Neff 5.4
Searched_HMMs 13730
Date Mon Mar 25 08:49:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007720.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/007720hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ymga1 f.19.1.1 (A:6-239) Aqu 24.7 90 0.0066 27.8 7.9 19 167-185 199-217 (234)
2 d3dtub2 f.17.2.1 (B:30-129) Ba 24.0 79 0.0058 24.6 6.5 58 164-221 31-96 (100)
3 d1fx8a_ f.19.1.1 (A:) Glycerol 21.3 2.5E+02 0.018 24.9 10.4 20 166-185 230-249 (254)
4 d1j4na_ f.19.1.1 (A:) Aquapori 19.7 1.3E+02 0.0094 26.9 7.9 18 168-185 215-232 (249)
5 d3ehbb2 f.17.2.1 (B:1-107) Bac 17.4 1.1E+02 0.0079 24.1 6.0 57 163-221 36-102 (107)
6 d1iwga8 f.35.1.1 (A:513-566,A: 14.8 3.5E+02 0.025 23.3 10.3 53 202-258 158-212 (222)
7 d2axtj1 f.23.32.1 (J:7-40) Pho 9.2 1.2E+02 0.0087 19.5 2.8 22 470-491 2-26 (34)
8 d1u7ga_ f.44.1.1 (A:) Ammonium 9.1 5.6E+02 0.041 24.2 9.6 92 41-144 153-277 (383)
9 d1nekd_ f.21.2.2 (D:) Succinat 6.8 5E+02 0.037 19.9 7.1 58 164-221 46-112 (113)
10 d1mkma1 a.4.5.33 (A:1-75) Tran 5.6 95 0.0069 22.7 1.2 31 113-143 26-56 (75)
No 1
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]}
Probab=24.68 E-value=90 Score=27.81 Aligned_cols=19 Identities=21% Similarity=0.436 Sum_probs=16.2
Q ss_pred hhhhhhHHHHHHHHHHHHH
Q 007720 167 WTVAPLFACMCACFLFILL 185 (591)
Q Consensus 167 W~isPi~~~~~a~~l~~~~ 185 (591)
.++.|+++++++.++|..+
T Consensus 199 y~vgP~~Ga~laa~ly~~~ 217 (234)
T d1ymga1 199 YWVGPVIGAGLGSLLYDFL 217 (234)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred eehHHHHHHHHHHHHHHHH
Confidence 3579999999999998874
No 2
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=24.01 E-value=79 Score=24.59 Aligned_cols=58 Identities=14% Similarity=0.237 Sum_probs=39.3
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHhhcc--------ccHHHHHHHHhhHHHHHHHHHHHHHHHhh
Q 007720 164 FLEWTVAPLFACMCACFLFILLKVLILRH--------KNARERILIFFPVDYGLSAGLLCLFLVYR 221 (591)
Q Consensus 164 ~~sW~isPi~~~~~a~~l~~~~~~~IL~r--------~n~~~~al~~~Pi~~~lt~~i~~~~iv~k 221 (591)
..-|++..+...+.+.++|.+.|+.--+. .++++...-.+|.+..+..++-++-++|.
T Consensus 31 ~v~~i~~~I~~~V~~~l~~~~~~~r~~~~~~~~~~~~n~~LEiiWTviP~lILi~l~~pS~~~ly~ 96 (100)
T d3dtub2 31 FILVIIAAITIFVTLLILYAVWRFHEKRNKVPARFTHNSPLEIAWTIVPIVILVAIGAFSLPVLFN 96 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHBTTTCCSCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777776643221 12467777788988888877777766664
No 3
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]}
Probab=21.33 E-value=2.5e+02 Score=24.93 Aligned_cols=20 Identities=15% Similarity=0.298 Sum_probs=16.9
Q ss_pred hhhhhhhHHHHHHHHHHHHH
Q 007720 166 EWTVAPLFACMCACFLFILL 185 (591)
Q Consensus 166 sW~isPi~~~~~a~~l~~~~ 185 (591)
-.++.|+++++++..+|+.+
T Consensus 230 vy~vgP~~Ga~ia~~~y~~l 249 (254)
T d1fx8a_ 230 VPLFGPIVGAIVGAFAYRKL 249 (254)
T ss_dssp HHHHTTHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHH
Confidence 45689999999999999864
No 4
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]}
Probab=19.73 E-value=1.3e+02 Score=26.90 Aligned_cols=18 Identities=17% Similarity=0.429 Sum_probs=15.4
Q ss_pred hhhhhHHHHHHHHHHHHH
Q 007720 168 TVAPLFACMCACFLFILL 185 (591)
Q Consensus 168 ~isPi~~~~~a~~l~~~~ 185 (591)
++.|++|++++.++|..+
T Consensus 215 ~vgP~iGa~la~~~y~~~ 232 (249)
T d1j4na_ 215 WVGPFIGAALAVLIYDFI 232 (249)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred ehHHHHHHHHHHHHHHHh
Confidence 478999999999998863
No 5
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=17.42 E-value=1.1e+02 Score=24.14 Aligned_cols=57 Identities=19% Similarity=0.386 Sum_probs=40.0
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhhccc----------cHHHHHHHHhhHHHHHHHHHHHHHHHhh
Q 007720 163 IFLEWTVAPLFACMCACFLFILLKVLILRHK----------NARERILIFFPVDYGLSAGLLCLFLVYR 221 (591)
Q Consensus 163 I~~sW~isPi~~~~~a~~l~~~~~~~IL~r~----------n~~~~al~~~Pi~~~lt~~i~~~~iv~k 221 (591)
-..-|++..+...+.+..+|.++|+. +++ +.+|...-++|.+..+..++-++-++|.
T Consensus 36 ~~v~~i~~~I~~~V~~~~~~~~~~~r--~~~~~~~~~~~~n~~lEi~WTviP~lIL~~laipSl~~Ly~ 102 (107)
T d3ehbb2 36 HFVLYIITAVTIFVCLLLLICIVRFN--RRANPVPARFTHNTPIEVIWTLVPVLILVAIGAFSLPILFR 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSB--TTTSSSCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhh--ccCCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777777777777652 222 2366677788988888888877776665
No 6
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=14.80 E-value=3.5e+02 Score=23.32 Aligned_cols=53 Identities=13% Similarity=0.112 Sum_probs=25.0
Q ss_pred HhhHHHHHHHHHHHHHHHhh--hcCcccccchHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 007720 202 FFPVDYGLSAGLLCLFLVYR--VRGHLVHIPRWVTIAAVALATFIGAVLPLVVIVPLAT 258 (591)
Q Consensus 202 ~~Pi~~~lt~~i~~~~iv~k--g~~~l~~~~~w~~~~~~~~~~~i~~~l~~~~~vP~~~ 258 (591)
.-|+++...+.+..|.-+.- +.+. +.+........+..+.+.+..++++|-+.
T Consensus 158 ~~~i~~t~ltti~gf~pl~~~~~~g~----~~~~~la~~v~~Gll~s~~~~l~~~Pal~ 212 (222)
T d1iwga8 158 LRPILMTSLAFILGVMPLVISTGAGS----GAQNAVGTGVMGGMVTATVLAIFFVPVFF 212 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSSSC----HHHHHHHHHHHHHHHHHHTTTTSSSSSSH
T ss_pred hhhhhhhHHHHHHHHHHHHhccccHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56877776666665543332 2221 22333222222223334444556788753
No 7
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=9.15 E-value=1.2e+02 Score=19.52 Aligned_cols=22 Identities=27% Similarity=0.795 Sum_probs=13.9
Q ss_pred hhHHHHHH-HHHHH--HHHHHhhhh
Q 007720 470 VSWWFRAL-GGLGA--VMGFILCGW 491 (591)
Q Consensus 470 ~p~wi~~~-g~~~i--~~G~~~~G~ 491 (591)
+|+|+... +|++. .+|+.++|.
T Consensus 2 iPLWlv~tv~G~~vi~~vG~FfYGs 26 (34)
T d2axtj1 2 IPLWIVATVAGMGVIVIVGLFFYGA 26 (34)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CcEEEeeehhhhhhHhheeeeeeee
Confidence 68887654 44433 567777774
No 8
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=9.10 E-value=5.6e+02 Score=24.16 Aligned_cols=92 Identities=21% Similarity=0.157 Sum_probs=55.5
Q ss_pred hcccCCCCccchhhcccCcccHHHHHHHHHHHHhhhhhhcCCccc--c----------------------------ccCC
Q 007720 41 SAGANNLPAPFSTALGSGTLTLLKASIMAGLIYVPGAALASNSTF--I----------------------------KENQ 90 (591)
Q Consensus 41 ~iGANDvANsfgTsVGs~~lt~~qA~ilA~IfEflGAvllG~~V~--~----------------------------~~~~ 90 (591)
..|.-|.| ||+.+- +.++++-+.++..+|.|.. . +...
T Consensus 153 ~lG~~Dfa-------Gs~vVH-----~~gG~~aL~~~~~lgpR~~~~~~~~~~~~~~~~~lG~~iLw~gW~gFN~gs~~~ 220 (383)
T d1u7ga_ 153 SHGALDFA-------GGTVVH-----INAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGT 220 (383)
T ss_dssp HHTCCCSS-------CTTTTH-----HHHHHHHHHHHHHSCCCCCTTCSSCCGGGHHHHHHHHHHHHHHHHHHHHGGGSS
T ss_pred cCCceecc-------Cceeee-----ecccHHHHHHHHhcCCcccccccccccCChhhhhHHHHHHHHHHHHhccccccc
Confidence 45777766 555554 5677788888888888730 0 0011
Q ss_pred CC---hhHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHhhhcccccc
Q 007720 91 PS---EGFLMWSMVVVLITATIWLVIATYFELPVSPQQATQAALLGSMLVTEGFDYI 144 (591)
Q Consensus 91 ~~---p~vLmlGM~~al~~a~~wl~~aT~~~lPVStThsivGaiiG~~l~~~G~~~V 144 (591)
.+ ....+-.++++..++..|+.+.-..+=-.|..+.+-|.+.|.--..-+.+.+
T Consensus 221 ~~~~~~~~~~nt~~a~a~~~~~~~~~~~~~~~k~~~~~~~nG~LaGLVaita~~~~v 277 (383)
T d1u7ga_ 221 ANEIAALAFVNTVVATAAAILGWIFGEWALRGLPSLLGACSGAIAGLVGVTPACGYI 277 (383)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHTTTTTTS
T ss_pred cchHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCHHHHHHHhhhhhhhcccCcccc
Confidence 11 1223345666777777777776666555577777777777665555555544
No 9
>d1nekd_ f.21.2.2 (D:) Succinate dehydrogenase subunit SdhD {Escherichia coli [TaxId: 562]}
Probab=6.76 E-value=5e+02 Score=19.86 Aligned_cols=58 Identities=12% Similarity=0.086 Sum_probs=0.0
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHhhc---------cccHHHHHHHHhhHHHHHHHHHHHHHHHhh
Q 007720 164 FLEWTVAPLFACMCACFLFILLKVLILR---------HKNARERILIFFPVDYGLSAGLLCLFLVYR 221 (591)
Q Consensus 164 ~~sW~isPi~~~~~a~~l~~~~~~~IL~---------r~n~~~~al~~~Pi~~~lt~~i~~~~iv~k 221 (591)
+..|+-+|.-..+....+....-|.-+- ++++.|..+..+=.+..+..++..++++|+
T Consensus 46 ~~~~~~~~~~~il~~l~l~~~~~H~~lGl~~IieDYi~~~~~r~~~~~~~~~~~~~~~~~~i~~lw~ 112 (113)
T d1nekd_ 46 WIGFFASAFTKVFTLLALFSILIHAWIGMWQVLTDYVKPLALRLMLQLVIVVALVVYVIYGFVVVWG 112 (113)
T ss_dssp HHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhChHHHHHHHHHHHHHHHHHHHhHhhhHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHc
No 10
>d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=5.64 E-value=95 Score=22.68 Aligned_cols=31 Identities=26% Similarity=0.160 Sum_probs=0.0
Q ss_pred HHHhhCCCCCchhHHHHHHHHHHhhhccccc
Q 007720 113 IATYFELPVSPQQATQAALLGSMLVTEGFDY 143 (591)
Q Consensus 113 ~aT~~~lPVStThsivGaiiG~~l~~~G~~~ 143 (591)
+|..+|+|-||+|=++-.+.-.|++....++
T Consensus 26 ia~~~~~~~st~~rll~tL~~~g~l~~~~~g 56 (75)
T d1mkma1 26 IAEKFNMSVSNAYKYMVVLEEKGFVLRKKDK 56 (75)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHTTSEEECTTS
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCCEEECCCC
Done!