Query 007721
Match_columns 591
No_of_seqs 399 out of 2198
Neff 7.9
Searched_HMMs 46136
Date Thu Mar 28 14:26:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007721.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007721hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 100.0 6E-35 1.3E-39 305.7 25.8 297 255-575 217-524 (966)
2 KOG4626 O-linked N-acetylgluco 100.0 8.1E-35 1.8E-39 304.7 24.0 351 221-579 119-487 (966)
3 KOG4441 Proteins containing BT 100.0 1.5E-29 3.3E-34 280.7 20.2 190 50-249 32-229 (571)
4 PHA02790 Kelch-like protein; P 100.0 4.8E-30 1E-34 281.4 15.7 170 52-230 20-196 (480)
5 PHA02713 hypothetical protein; 100.0 1.6E-29 3.4E-34 281.4 18.4 192 49-249 20-218 (557)
6 PHA03098 kelch-like protein; P 100.0 4E-28 8.6E-33 270.7 19.9 189 51-249 6-200 (534)
7 TIGR00990 3a0801s09 mitochondr 100.0 1.4E-25 3E-30 254.3 34.6 293 223-544 132-500 (615)
8 TIGR00990 3a0801s09 mitochondr 99.9 7.7E-25 1.7E-29 248.2 36.5 310 218-555 160-553 (615)
9 KOG4350 Uncharacterized conser 99.9 1.1E-26 2.3E-31 233.1 13.1 198 48-253 38-240 (620)
10 PRK15174 Vi polysaccharide exp 99.9 5.1E-23 1.1E-27 234.0 37.0 316 235-578 58-382 (656)
11 PRK15174 Vi polysaccharide exp 99.9 6.8E-23 1.5E-27 233.0 33.5 285 233-544 90-385 (656)
12 PRK11447 cellulose synthase su 99.9 1.5E-22 3.3E-27 244.2 35.6 307 235-544 285-704 (1157)
13 TIGR02917 PEP_TPR_lipo putativ 99.9 1.9E-21 4.2E-26 226.8 38.3 346 221-575 536-898 (899)
14 KOG0547 Translocase of outer m 99.9 4.8E-22 1.1E-26 205.0 26.3 279 253-556 112-514 (606)
15 PRK11447 cellulose synthase su 99.9 4.6E-21 1E-25 231.4 38.8 306 261-576 274-699 (1157)
16 TIGR02917 PEP_TPR_lipo putativ 99.9 3.9E-21 8.4E-26 224.2 36.9 313 235-557 481-817 (899)
17 PRK09782 bacteriophage N4 rece 99.9 8.7E-22 1.9E-26 229.7 28.2 266 255-546 476-746 (987)
18 KOG0547 Translocase of outer m 99.9 5.4E-21 1.2E-25 197.4 26.5 319 235-557 131-582 (606)
19 PRK11788 tetratricopeptide rep 99.9 1.7E-20 3.6E-25 200.5 31.4 288 258-575 37-345 (389)
20 PRK09782 bacteriophage N4 rece 99.9 4.5E-20 9.7E-25 215.4 31.6 289 256-545 376-711 (987)
21 KOG1126 DNA-binding cell divis 99.9 1.2E-20 2.6E-25 202.0 24.1 265 257-545 354-625 (638)
22 PRK11189 lipoprotein NlpI; Pro 99.9 8E-20 1.7E-24 188.6 25.1 188 335-550 81-276 (296)
23 KOG0624 dsRNA-activated protei 99.8 4.3E-20 9.3E-25 183.4 18.6 220 318-550 41-265 (504)
24 PRK11788 tetratricopeptide rep 99.8 2.1E-18 4.5E-23 184.3 31.9 291 221-539 38-346 (389)
25 PRK10049 pgaA outer membrane p 99.8 1.6E-18 3.4E-23 200.9 32.9 307 234-545 98-461 (765)
26 PLN02789 farnesyltranstransfer 99.8 1.2E-18 2.6E-23 180.4 23.3 195 335-553 54-266 (320)
27 PRK10049 pgaA outer membrane p 99.8 1.9E-17 4.2E-22 191.9 34.7 308 256-576 49-455 (765)
28 PRK11189 lipoprotein NlpI; Pro 99.8 2.8E-18 6E-23 177.1 24.6 234 271-526 41-286 (296)
29 PRK12370 invasion protein regu 99.8 2.2E-18 4.9E-23 192.8 24.3 167 335-525 321-489 (553)
30 KOG1126 DNA-binding cell divis 99.8 2.9E-18 6.4E-23 183.7 22.8 258 271-553 334-600 (638)
31 KOG2075 Topoisomerase TOP1-int 99.8 5.8E-19 1.3E-23 182.2 14.7 177 50-232 110-298 (521)
32 PRK12370 invasion protein regu 99.8 1.4E-17 3E-22 186.5 24.9 216 335-577 278-505 (553)
33 PLN02789 farnesyltranstransfer 99.8 4.4E-17 9.6E-22 168.8 23.9 222 270-523 34-267 (320)
34 KOG0548 Molecular co-chaperone 99.8 4E-17 8.7E-22 171.4 23.4 84 235-321 18-103 (539)
35 KOG0550 Molecular chaperone (D 99.8 1.7E-17 3.6E-22 168.9 16.6 275 256-543 49-353 (486)
36 KOG2002 TPR-containing nuclear 99.8 3E-15 6.5E-20 165.9 34.7 306 235-540 286-709 (1018)
37 KOG0624 dsRNA-activated protei 99.8 2.9E-16 6.3E-21 156.3 24.2 285 245-545 64-375 (504)
38 KOG1155 Anaphase-promoting com 99.7 5.8E-15 1.3E-19 152.3 33.3 253 262-539 233-494 (559)
39 KOG1173 Anaphase-promoting com 99.7 6.9E-16 1.5E-20 162.6 26.2 270 263-557 251-536 (611)
40 TIGR02521 type_IV_pilW type IV 99.7 4.4E-16 9.5E-21 151.8 22.4 186 335-542 48-234 (234)
41 PF13429 TPR_15: Tetratricopep 99.7 2.2E-17 4.8E-22 169.0 13.4 255 261-540 13-277 (280)
42 PF00651 BTB: BTB/POZ domain; 99.7 2.3E-17 5.1E-22 144.4 8.3 101 51-154 7-110 (111)
43 TIGR02521 type_IV_pilW type IV 99.7 1.6E-15 3.5E-20 147.7 21.7 198 351-572 30-230 (234)
44 PRK15359 type III secretion sy 99.7 2.7E-16 5.8E-21 144.8 14.3 125 339-524 14-139 (144)
45 KOG1125 TPR repeat-containing 99.7 6.3E-16 1.4E-20 163.6 18.2 234 335-578 302-555 (579)
46 PRK15359 type III secretion sy 99.7 4.5E-16 9.7E-21 143.3 14.2 125 372-556 13-138 (144)
47 KOG2002 TPR-containing nuclear 99.7 3.2E-14 7E-19 157.9 31.0 328 236-572 147-558 (1018)
48 TIGR00540 hemY_coli hemY prote 99.7 7.7E-14 1.7E-18 150.7 32.9 285 255-559 83-385 (409)
49 KOG1129 TPR repeat-containing 99.7 1.3E-15 2.8E-20 150.9 15.8 239 260-523 227-475 (478)
50 KOG4591 Uncharacterized conser 99.7 3.4E-16 7.4E-21 144.2 10.3 144 50-200 62-209 (280)
51 KOG1174 Anaphase-promoting com 99.7 1.3E-13 2.8E-18 140.6 28.8 295 237-562 217-521 (564)
52 smart00225 BTB Broad-Complex, 99.6 7.2E-16 1.6E-20 128.4 10.0 89 57-148 2-90 (90)
53 KOG1155 Anaphase-promoting com 99.6 7.9E-14 1.7E-18 144.1 26.1 258 260-545 266-541 (559)
54 COG3063 PilF Tfp pilus assembl 99.6 1.2E-14 2.7E-19 138.6 18.3 173 321-552 41-214 (250)
55 KOG4682 Uncharacterized conser 99.6 1.8E-15 3.8E-20 153.1 12.3 179 50-235 65-253 (488)
56 PF13429 TPR_15: Tetratricopep 99.6 1.3E-15 2.8E-20 156.0 10.3 243 293-560 13-264 (280)
57 KOG1125 TPR repeat-containing 99.6 2.3E-14 5.1E-19 151.8 19.8 225 260-509 289-530 (579)
58 KOG2076 RNA polymerase III tra 99.6 2.1E-13 4.5E-18 150.7 27.8 281 258-538 141-510 (895)
59 TIGR00540 hemY_coli hemY prote 99.6 7.7E-13 1.7E-17 142.9 30.3 279 235-540 100-399 (409)
60 PRK10747 putative protoheme IX 99.6 9.3E-13 2E-17 141.7 29.3 276 255-557 83-374 (398)
61 KOG0783 Uncharacterized conser 99.6 1.7E-15 3.7E-20 164.0 7.4 133 62-197 719-856 (1267)
62 KOG0548 Molecular co-chaperone 99.6 1.8E-13 3.9E-18 144.2 21.3 233 256-523 224-472 (539)
63 KOG4162 Predicted calmodulin-b 99.5 5E-12 1.1E-16 137.9 29.3 118 300-417 406-545 (799)
64 PRK14574 hmsH outer membrane p 99.5 1E-11 2.2E-16 143.1 33.4 319 235-557 84-497 (822)
65 TIGR03302 OM_YfiO outer membra 99.5 6.3E-13 1.4E-17 132.3 20.1 181 346-540 27-232 (235)
66 PRK14574 hmsH outer membrane p 99.5 3.3E-12 7.1E-17 147.2 28.6 313 257-576 35-395 (822)
67 PRK15179 Vi polysaccharide bio 99.5 6.6E-13 1.4E-17 150.3 20.4 158 336-551 70-229 (694)
68 KOG0550 Molecular chaperone (D 99.5 1.9E-13 4.1E-18 139.6 14.2 230 322-555 56-332 (486)
69 cd05804 StaR_like StaR_like; a 99.5 1.2E-11 2.7E-16 130.4 28.6 268 256-541 43-337 (355)
70 KOG1173 Anaphase-promoting com 99.5 1.7E-12 3.7E-17 137.3 21.4 216 290-523 314-535 (611)
71 COG3063 PilF Tfp pilus assembl 99.5 6.5E-12 1.4E-16 120.2 22.6 202 257-513 36-243 (250)
72 KOG0553 TPR repeat-containing 99.5 3.5E-13 7.6E-18 133.6 12.9 157 353-576 82-244 (304)
73 KOG1129 TPR repeat-containing 99.5 1.5E-12 3.3E-17 129.4 16.4 225 293-544 228-462 (478)
74 KOG2076 RNA polymerase III tra 99.5 1.2E-11 2.6E-16 137.0 25.1 256 290-545 141-483 (895)
75 PRK10370 formate-dependent nit 99.5 9.2E-13 2E-17 127.8 14.2 59 335-393 56-115 (198)
76 cd05804 StaR_like StaR_like; a 99.4 4.3E-12 9.4E-17 133.9 19.8 175 347-542 1-179 (355)
77 PRK10747 putative protoheme IX 99.4 1.5E-10 3.2E-15 124.7 30.8 252 261-540 123-390 (398)
78 PRK10370 formate-dependent nit 99.4 5E-12 1.1E-16 122.7 17.4 123 365-545 52-178 (198)
79 KOG0553 TPR repeat-containing 99.4 9.9E-13 2.1E-17 130.4 11.0 99 449-547 86-185 (304)
80 TIGR02552 LcrH_SycD type III s 99.4 4.1E-12 8.8E-17 115.0 14.0 118 373-548 4-122 (135)
81 TIGR03302 OM_YfiO outer membra 99.4 1E-11 2.3E-16 123.5 16.9 166 335-508 50-234 (235)
82 KOG4162 Predicted calmodulin-b 99.4 7.6E-11 1.6E-15 128.8 24.4 283 235-545 460-788 (799)
83 PRK15179 Vi polysaccharide bio 99.3 4.4E-11 9.6E-16 135.5 19.8 124 335-516 103-227 (694)
84 TIGR02552 LcrH_SycD type III s 99.3 2E-11 4.3E-16 110.5 13.8 117 339-513 4-121 (135)
85 KOG1127 TPR repeat-containing 99.3 1.4E-10 3E-15 129.3 21.9 310 239-552 478-892 (1238)
86 KOG1840 Kinesin light chain [C 99.3 1.7E-10 3.8E-15 125.3 21.2 233 255-540 198-479 (508)
87 COG2956 Predicted N-acetylgluc 99.3 5.7E-09 1.2E-13 104.3 27.3 277 235-575 51-349 (389)
88 KOG1127 TPR repeat-containing 99.3 2.1E-10 4.6E-15 127.8 18.7 182 335-539 475-658 (1238)
89 KOG1128 Uncharacterized conser 99.2 1.8E-10 3.9E-15 125.4 16.6 147 262-418 404-552 (777)
90 KOG1840 Kinesin light chain [C 99.2 8.4E-10 1.8E-14 120.0 21.8 208 321-542 205-440 (508)
91 PRK10153 DNA-binding transcrip 99.2 1.5E-10 3.3E-15 127.6 16.3 152 380-549 331-491 (517)
92 PLN03218 maturation of RBCL 1; 99.2 2.8E-08 6E-13 118.0 36.0 284 235-548 453-758 (1060)
93 PLN03088 SGT1, suppressor of 99.2 1.8E-10 3.8E-15 122.0 14.8 112 355-524 5-117 (356)
94 PLN03218 maturation of RBCL 1; 99.2 2.3E-08 5.1E-13 118.6 33.4 289 266-556 416-731 (1060)
95 PLN03081 pentatricopeptide (PP 99.2 1.2E-09 2.5E-14 126.3 22.0 275 260-539 263-556 (697)
96 KOG1174 Anaphase-promoting com 99.2 5.7E-09 1.2E-13 107.1 24.0 252 235-514 248-508 (564)
97 PRK15363 pathogenicity island 99.2 5.2E-10 1.1E-14 102.5 13.8 110 385-552 35-147 (157)
98 COG5010 TadD Flp pilus assembl 99.2 2.9E-09 6.2E-14 104.1 19.5 176 336-536 51-227 (257)
99 PRK11906 transcriptional regul 99.2 2.4E-10 5.3E-15 120.5 12.8 154 389-560 259-424 (458)
100 PLN03088 SGT1, suppressor of 99.1 2E-10 4.3E-15 121.6 11.3 96 458-553 16-113 (356)
101 PLN03077 Protein ECB2; Provisi 99.1 1.3E-08 2.7E-13 120.4 27.6 248 258-538 426-718 (857)
102 PF13414 TPR_11: TPR repeat; P 99.1 1.1E-10 2.5E-15 92.8 7.0 67 476-542 2-69 (69)
103 KOG2003 TPR repeat-containing 99.1 1.1E-08 2.3E-13 105.8 22.9 257 262-543 425-692 (840)
104 PRK04841 transcriptional regul 99.1 2.1E-08 4.5E-13 119.2 28.7 267 257-544 453-764 (903)
105 KOG0495 HAT repeat protein [RN 99.1 1.1E-07 2.5E-12 102.4 30.8 289 238-558 569-867 (913)
106 PF13414 TPR_11: TPR repeat; P 99.1 2.5E-10 5.4E-15 90.8 8.1 67 350-416 1-69 (69)
107 COG5010 TadD Flp pilus assembl 99.1 3.2E-09 6.9E-14 103.8 16.6 154 292-503 70-228 (257)
108 PLN03077 Protein ECB2; Provisi 99.1 5.3E-08 1.1E-12 115.2 30.3 284 257-551 324-632 (857)
109 KOG4648 Uncharacterized conser 99.1 1.3E-10 2.8E-15 116.3 6.6 221 321-545 103-335 (536)
110 PLN03081 pentatricopeptide (PP 99.1 5.8E-08 1.3E-12 112.2 29.6 193 335-558 276-476 (697)
111 KOG1156 N-terminal acetyltrans 99.1 2.4E-08 5.1E-13 107.8 23.7 295 256-572 7-316 (700)
112 COG2956 Predicted N-acetylgluc 99.1 1E-07 2.3E-12 95.4 25.8 205 213-418 64-282 (389)
113 PRK15363 pathogenicity island 99.1 1.7E-09 3.6E-14 99.2 12.1 81 335-415 52-133 (157)
114 PRK11906 transcriptional regul 99.1 6E-09 1.3E-13 110.1 17.9 145 369-537 275-433 (458)
115 PRK14720 transcript cleavage f 99.0 2.2E-09 4.8E-14 122.9 15.1 155 344-540 23-178 (906)
116 KOG2003 TPR repeat-containing 99.0 3.7E-08 7.9E-13 101.9 22.3 257 257-537 455-722 (840)
117 KOG1156 N-terminal acetyltrans 99.0 1.6E-08 3.5E-13 109.1 20.2 236 298-555 17-263 (700)
118 COG4785 NlpI Lipoprotein NlpI, 99.0 8.6E-09 1.9E-13 97.8 15.5 201 322-551 65-278 (297)
119 PRK02603 photosystem I assembl 99.0 3.3E-09 7.2E-14 100.6 13.0 66 479-544 74-153 (172)
120 CHL00033 ycf3 photosystem I as 99.0 5.6E-09 1.2E-13 98.5 13.6 121 368-543 15-152 (168)
121 PLN03098 LPA1 LOW PSII ACCUMUL 99.0 1.1E-09 2.4E-14 115.5 8.9 101 471-577 69-174 (453)
122 PF12569 NARP1: NMDA receptor- 99.0 3.4E-08 7.3E-13 108.6 20.8 201 333-545 19-262 (517)
123 TIGR02795 tol_pal_ybgF tol-pal 99.0 1.1E-08 2.4E-13 89.6 13.5 107 353-514 3-113 (119)
124 PF13432 TPR_16: Tetratricopep 99.0 1.7E-09 3.7E-14 85.0 7.2 65 481-545 1-65 (65)
125 PRK14720 transcript cleavage f 99.0 1E-07 2.2E-12 109.5 24.2 232 255-522 30-268 (906)
126 KOG1130 Predicted G-alpha GTPa 99.0 5.1E-09 1.1E-13 107.3 12.2 254 235-540 33-344 (639)
127 TIGR02795 tol_pal_ybgF tol-pal 99.0 8E-09 1.7E-13 90.5 12.1 105 386-545 3-110 (119)
128 COG3071 HemY Uncharacterized e 99.0 1.9E-06 4E-11 88.9 30.3 275 255-567 83-383 (400)
129 PRK10153 DNA-binding transcrip 98.9 9.4E-09 2E-13 113.5 14.5 125 335-518 359-494 (517)
130 PRK02603 photosystem I assembl 98.9 1.4E-08 3.1E-13 96.2 13.9 71 349-419 32-106 (172)
131 KOG4555 TPR repeat-containing 98.9 1.9E-08 4E-13 88.2 12.3 85 334-418 59-148 (175)
132 KOG0495 HAT repeat protein [RN 98.9 1.8E-06 4E-11 93.4 29.2 280 235-545 600-885 (913)
133 KOG3060 Uncharacterized conser 98.9 2.1E-07 4.6E-12 90.6 20.0 186 346-555 46-239 (289)
134 PF04733 Coatomer_E: Coatomer 98.9 1.5E-08 3.3E-13 103.9 13.1 246 267-543 12-268 (290)
135 CHL00033 ycf3 photosystem I as 98.9 3.8E-08 8.1E-13 92.9 14.5 84 336-419 17-106 (168)
136 KOG0511 Ankyrin repeat protein 98.9 9.5E-09 2.1E-13 103.9 9.6 141 57-201 295-443 (516)
137 COG0457 NrfG FOG: TPR repeat [ 98.8 7.1E-07 1.5E-11 84.1 21.9 196 335-556 76-278 (291)
138 COG4783 Putative Zn-dependent 98.8 2.6E-07 5.7E-12 97.4 19.6 144 344-545 298-442 (484)
139 PF13432 TPR_16: Tetratricopep 98.8 2.5E-08 5.5E-13 78.3 7.9 63 356-418 1-64 (65)
140 PLN03098 LPA1 LOW PSII ACCUMUL 98.8 1.9E-08 4E-13 106.3 9.0 73 346-418 69-146 (453)
141 KOG4648 Uncharacterized conser 98.8 5.7E-09 1.2E-13 104.7 4.8 101 355-480 100-202 (536)
142 cd00189 TPR Tetratricopeptide 98.8 3.5E-08 7.5E-13 80.5 8.5 82 462-543 19-100 (100)
143 KOG1130 Predicted G-alpha GTPa 98.8 3.4E-08 7.3E-13 101.4 10.0 249 261-545 22-309 (639)
144 KOG3060 Uncharacterized conser 98.8 1.1E-06 2.3E-11 85.7 19.7 128 335-484 103-232 (289)
145 KOG4234 TPR repeat-containing 98.8 6.4E-08 1.4E-12 90.8 10.8 62 357-418 100-167 (271)
146 PRK04841 transcriptional regul 98.7 1.8E-06 3.9E-11 102.7 26.1 260 261-541 346-642 (903)
147 COG0457 NrfG FOG: TPR repeat [ 98.7 7.5E-06 1.6E-10 77.0 25.5 238 270-536 37-289 (291)
148 KOG0543 FKBP-type peptidyl-pro 98.7 9.5E-08 2.1E-12 99.0 12.6 111 293-418 213-324 (397)
149 KOG0543 FKBP-type peptidyl-pro 98.7 1.4E-07 3.1E-12 97.7 13.8 129 353-539 209-354 (397)
150 KOG4234 TPR repeat-containing 98.7 6.2E-08 1.3E-12 91.0 9.9 99 295-418 102-201 (271)
151 cd00189 TPR Tetratricopeptide 98.7 1.4E-07 3.1E-12 76.8 10.9 83 335-417 17-100 (100)
152 PF12895 Apc3: Anaphase-promot 98.7 2.4E-08 5.2E-13 82.8 6.0 74 463-537 9-84 (84)
153 COG4783 Putative Zn-dependent 98.7 2.1E-06 4.5E-11 90.8 21.7 138 335-513 323-462 (484)
154 KOG2376 Signal recognition par 98.7 1.3E-06 2.7E-11 93.9 20.1 160 356-547 83-260 (652)
155 PF12569 NARP1: NMDA receptor- 98.7 3.9E-06 8.4E-11 92.5 24.4 259 262-536 10-287 (517)
156 COG4235 Cytochrome c biogenesi 98.6 5.1E-07 1.1E-11 90.6 14.0 123 335-512 139-262 (287)
157 PRK10803 tol-pal system protei 98.6 5E-07 1.1E-11 91.4 14.0 107 352-513 142-253 (263)
158 PF12688 TPR_5: Tetratrico pep 98.6 4.8E-07 1E-11 80.2 12.1 99 386-539 2-103 (120)
159 KOG1128 Uncharacterized conser 98.6 2.3E-06 4.9E-11 94.0 19.2 148 263-416 431-584 (777)
160 PRK10866 outer membrane biogen 98.6 3.8E-06 8.1E-11 84.2 19.4 159 335-534 49-235 (243)
161 PF09976 TPR_21: Tetratricopep 98.6 1.3E-06 2.9E-11 80.2 15.0 119 364-538 23-145 (145)
162 PF12688 TPR_5: Tetratrico pep 98.6 1.5E-06 3.3E-11 77.0 13.5 99 352-505 1-103 (120)
163 PRK10803 tol-pal system protei 98.5 9E-07 1.9E-11 89.5 13.0 107 385-546 142-252 (263)
164 PF13371 TPR_9: Tetratricopept 98.5 3.1E-07 6.8E-12 73.6 7.7 68 484-551 2-70 (73)
165 COG3071 HemY Uncharacterized e 98.5 0.00011 2.3E-09 76.2 27.4 279 228-540 94-390 (400)
166 PF14559 TPR_19: Tetratricopep 98.5 3.7E-07 7.9E-12 72.1 7.2 65 487-551 1-66 (68)
167 PF06552 TOM20_plant: Plant sp 98.5 3.3E-07 7.1E-12 85.4 7.5 93 463-556 11-124 (186)
168 PF14938 SNAP: Soluble NSF att 98.5 5.1E-06 1.1E-10 85.3 17.1 219 258-550 37-276 (282)
169 PF09976 TPR_21: Tetratricopep 98.5 3.2E-06 6.9E-11 77.7 14.0 111 301-412 24-145 (145)
170 PF12895 Apc3: Anaphase-promot 98.5 2.8E-07 6.1E-12 76.4 6.4 76 335-411 6-84 (84)
171 PF06552 TOM20_plant: Plant sp 98.5 3.9E-07 8.5E-12 84.9 7.3 84 335-418 8-113 (186)
172 PF13371 TPR_9: Tetratricopept 98.5 6.7E-07 1.4E-11 71.7 7.8 60 359-418 2-62 (73)
173 COG4785 NlpI Lipoprotein NlpI, 98.5 5.6E-06 1.2E-10 79.0 14.9 180 295-509 72-269 (297)
174 PF13525 YfiO: Outer membrane 98.4 1.2E-05 2.7E-10 78.3 17.8 165 351-530 4-197 (203)
175 PRK10866 outer membrane biogen 98.4 1.3E-05 2.7E-10 80.4 18.2 196 350-571 30-238 (243)
176 COG4235 Cytochrome c biogenesi 98.4 3.3E-06 7.2E-11 84.8 13.7 121 367-545 137-261 (287)
177 KOG4555 TPR repeat-containing 98.4 1.9E-06 4E-11 75.8 9.1 84 462-545 62-149 (175)
178 PF13424 TPR_12: Tetratricopep 98.3 4.1E-07 8.8E-12 74.1 4.0 68 474-541 2-76 (78)
179 KOG4340 Uncharacterized conser 98.3 9.4E-05 2E-09 73.8 20.8 301 233-579 24-360 (459)
180 PRK15331 chaperone protein Sic 98.3 7.8E-06 1.7E-10 75.6 12.2 76 476-552 70-145 (165)
181 KOG1941 Acetylcholine receptor 98.3 2.7E-05 6E-10 79.3 16.9 232 262-544 12-279 (518)
182 PRK15331 chaperone protein Sic 98.3 1.4E-05 2.9E-10 74.0 12.9 109 344-511 29-138 (165)
183 KOG0376 Serine-threonine phosp 98.2 9.2E-07 2E-11 93.4 4.3 85 335-419 21-106 (476)
184 KOG0783 Uncharacterized conser 98.2 1.3E-06 2.8E-11 96.3 5.3 68 52-121 556-635 (1267)
185 KOG3785 Uncharacterized conser 98.2 0.00018 4E-09 73.2 19.9 251 262-526 63-331 (557)
186 PF13424 TPR_12: Tetratricopep 98.2 1.9E-06 4.2E-11 70.1 4.5 67 349-415 2-76 (78)
187 PF13431 TPR_17: Tetratricopep 98.2 1.4E-06 3.1E-11 59.1 3.0 32 500-531 2-33 (34)
188 PF07707 BACK: BTB And C-termi 98.2 1.8E-06 3.9E-11 74.2 4.3 87 161-249 1-91 (103)
189 KOG1308 Hsp70-interacting prot 98.2 5.7E-07 1.2E-11 91.0 1.1 84 335-418 131-215 (377)
190 PF14938 SNAP: Soluble NSF att 98.1 0.00011 2.4E-09 75.3 17.9 195 354-568 37-257 (282)
191 KOG3081 Vesicle coat complex C 98.1 0.00023 4.9E-09 70.3 18.7 167 348-540 104-270 (299)
192 KOG0376 Serine-threonine phosp 98.1 3.8E-06 8.3E-11 88.8 6.8 122 356-540 8-130 (476)
193 KOG2053 Mitochondrial inherita 98.1 0.00063 1.4E-08 76.8 24.4 227 301-544 22-259 (932)
194 PF13525 YfiO: Outer membrane 98.1 0.00018 3.9E-09 70.1 18.2 149 256-404 5-197 (203)
195 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 2.9E-05 6.3E-10 82.7 13.5 94 462-556 219-312 (395)
196 KOG2376 Signal recognition par 98.1 8.7E-05 1.9E-09 80.1 16.5 172 335-540 29-204 (652)
197 KOG4642 Chaperone-dependent E3 98.1 1.1E-05 2.3E-10 78.2 8.0 81 335-415 27-108 (284)
198 PF13512 TPR_18: Tetratricopep 98.1 8.9E-05 1.9E-09 67.1 13.4 68 352-419 10-81 (142)
199 COG4700 Uncharacterized protei 98.1 0.0002 4.3E-09 67.1 15.7 145 335-537 73-219 (251)
200 KOG2047 mRNA splicing factor [ 98.1 0.0093 2E-07 65.4 30.6 279 256-580 248-583 (835)
201 PF04733 Coatomer_E: Coatomer 98.1 3.1E-05 6.7E-10 79.7 11.5 157 259-419 105-270 (290)
202 PF14559 TPR_19: Tetratricopep 98.0 1.5E-05 3.2E-10 62.8 7.0 56 363-418 2-58 (68)
203 PF13431 TPR_17: Tetratricopep 98.0 6E-06 1.3E-10 56.1 3.3 33 341-373 2-34 (34)
204 KOG4642 Chaperone-dependent E3 98.0 7.4E-05 1.6E-09 72.5 11.2 111 462-572 29-144 (284)
205 KOG4340 Uncharacterized conser 97.9 0.0004 8.7E-09 69.4 16.2 177 335-539 27-206 (459)
206 COG4700 Uncharacterized protei 97.9 0.001 2.2E-08 62.5 17.6 163 303-529 71-247 (251)
207 PF02214 BTB_2: BTB/POZ domain 97.9 1.4E-05 3E-10 67.8 5.0 88 57-147 1-94 (94)
208 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00023 5E-09 75.9 15.0 116 268-414 181-297 (395)
209 KOG1915 Cell cycle control pro 97.9 0.05 1.1E-06 58.0 30.9 278 237-539 192-499 (677)
210 KOG2716 Polymerase delta-inter 97.9 0.0001 2.2E-09 72.0 10.7 97 57-156 7-106 (230)
211 PF00515 TPR_1: Tetratricopept 97.9 2.1E-05 4.6E-10 53.1 4.1 34 511-544 1-34 (34)
212 KOG2838 Uncharacterized conser 97.8 1.2E-05 2.5E-10 78.6 3.6 110 65-189 262-389 (401)
213 KOG0545 Aryl-hydrocarbon recep 97.8 0.00027 5.8E-09 68.9 12.2 115 257-384 179-296 (329)
214 COG1729 Uncharacterized protei 97.8 0.00041 9E-09 69.1 13.4 108 388-550 144-254 (262)
215 COG1729 Uncharacterized protei 97.8 0.0004 8.8E-09 69.2 12.9 105 355-514 144-252 (262)
216 PF13512 TPR_18: Tetratricopep 97.7 0.0005 1.1E-08 62.3 12.2 106 385-545 10-133 (142)
217 PF13428 TPR_14: Tetratricopep 97.7 5E-05 1.1E-09 54.7 4.7 43 477-519 1-43 (44)
218 KOG3785 Uncharacterized conser 97.7 0.0047 1E-07 63.3 20.2 257 269-563 35-335 (557)
219 smart00875 BACK BTB And C-term 97.7 6.6E-05 1.4E-09 63.8 6.3 87 161-250 1-91 (101)
220 KOG1987 Speckle-type POZ prote 97.7 1.7E-05 3.6E-10 82.0 2.7 127 63-193 109-240 (297)
221 PF00515 TPR_1: Tetratricopept 97.7 6.5E-05 1.4E-09 50.6 4.6 32 353-384 2-33 (34)
222 KOG2047 mRNA splicing factor [ 97.7 0.11 2.4E-06 57.4 30.8 416 123-549 243-728 (835)
223 KOG1308 Hsp70-interacting prot 97.6 6.1E-05 1.3E-09 76.6 4.9 89 298-386 124-216 (377)
224 KOG2796 Uncharacterized conser 97.6 0.0021 4.6E-08 63.4 14.8 61 353-413 178-240 (366)
225 PF07719 TPR_2: Tetratricopept 97.5 0.00011 2.4E-09 49.3 3.9 33 511-543 1-33 (34)
226 KOG0551 Hsp90 co-chaperone CNS 97.5 0.00054 1.2E-08 69.5 10.1 76 351-426 80-160 (390)
227 KOG0530 Protein farnesyltransf 97.5 0.03 6.6E-07 55.4 21.8 180 270-489 40-233 (318)
228 COG3898 Uncharacterized membra 97.5 0.17 3.7E-06 52.9 30.9 288 261-581 89-396 (531)
229 KOG3473 RNA polymerase II tran 97.5 0.00041 9E-09 57.3 7.4 81 57-140 19-112 (112)
230 KOG1915 Cell cycle control pro 97.5 0.2 4.4E-06 53.5 28.2 219 279-543 311-539 (677)
231 PF07719 TPR_2: Tetratricopept 97.4 0.00025 5.4E-09 47.5 4.6 31 353-383 2-32 (34)
232 KOG0545 Aryl-hydrocarbon recep 97.4 0.0017 3.8E-08 63.3 11.9 118 289-418 179-297 (329)
233 KOG0530 Protein farnesyltransf 97.3 0.022 4.9E-07 56.3 17.9 184 303-523 41-233 (318)
234 COG4105 ComL DNA uptake lipopr 97.2 0.03 6.4E-07 55.6 17.8 189 351-557 33-249 (254)
235 KOG2838 Uncharacterized conser 97.2 0.00096 2.1E-08 65.5 6.8 83 57-141 133-219 (401)
236 PF11822 DUF3342: Domain of un 97.1 0.0012 2.5E-08 67.4 7.6 113 64-178 14-136 (317)
237 KOG1941 Acetylcholine receptor 97.1 0.092 2E-06 54.3 21.0 259 255-532 82-383 (518)
238 COG3118 Thioredoxin domain-con 97.1 0.012 2.7E-07 59.3 14.5 157 357-537 139-298 (304)
239 PF13428 TPR_14: Tetratricopep 97.1 0.001 2.2E-08 47.8 5.1 40 353-392 2-42 (44)
240 COG3898 Uncharacterized membra 97.1 0.54 1.2E-05 49.3 26.4 245 265-540 129-392 (531)
241 COG4105 ComL DNA uptake lipopr 97.0 0.099 2.1E-06 52.0 19.4 162 256-418 34-236 (254)
242 KOG1070 rRNA processing protei 97.0 0.037 7.9E-07 65.7 18.7 232 336-567 1442-1693(1710)
243 KOG1550 Extracellular protein 97.0 0.26 5.6E-06 55.6 25.3 264 256-544 244-542 (552)
244 KOG0551 Hsp90 co-chaperone CNS 96.9 0.0047 1E-07 62.9 9.3 100 388-541 84-183 (390)
245 KOG1586 Protein required for f 96.9 0.071 1.5E-06 52.1 16.8 121 299-419 84-229 (288)
246 KOG2053 Mitochondrial inherita 96.9 0.0041 8.9E-08 70.4 9.3 88 458-545 24-111 (932)
247 PF13181 TPR_8: Tetratricopept 96.9 0.0014 3.1E-08 43.9 3.7 32 512-543 2-33 (34)
248 KOG2471 TPR repeat-containing 96.9 0.041 8.9E-07 58.8 16.0 60 477-536 619-680 (696)
249 PF04184 ST7: ST7 protein; In 96.8 0.082 1.8E-06 57.0 18.4 58 354-411 261-321 (539)
250 KOG1665 AFH1-interacting prote 96.8 0.0037 7.9E-08 59.9 7.5 90 57-149 11-105 (302)
251 PF03704 BTAD: Bacterial trans 96.8 0.023 5E-07 51.8 12.7 113 391-539 12-124 (146)
252 KOG1550 Extracellular protein 96.8 0.23 5E-06 55.9 22.5 287 262-577 218-538 (552)
253 PF04184 ST7: ST7 protein; In 96.7 0.044 9.6E-07 59.0 15.4 157 364-557 180-347 (539)
254 PF13181 TPR_8: Tetratricopept 96.7 0.0021 4.5E-08 43.1 3.5 33 478-510 2-34 (34)
255 PF03704 BTAD: Bacterial trans 96.6 0.016 3.6E-07 52.8 10.3 62 352-413 62-124 (146)
256 smart00512 Skp1 Found in Skp1 96.5 0.012 2.6E-07 50.8 8.2 81 57-140 4-104 (104)
257 KOG2796 Uncharacterized conser 96.5 0.015 3.2E-07 57.6 9.5 181 369-575 166-351 (366)
258 PRK10941 hypothetical protein; 96.4 0.02 4.3E-07 58.1 10.1 66 354-419 183-249 (269)
259 KOG2610 Uncharacterized conser 96.4 0.13 2.9E-06 52.7 15.3 84 335-418 120-208 (491)
260 KOG2610 Uncharacterized conser 96.3 0.19 4.2E-06 51.5 16.4 159 260-418 107-282 (491)
261 smart00028 TPR Tetratricopepti 96.3 0.0042 9.1E-08 39.5 3.2 32 512-543 2-33 (34)
262 PF13281 DUF4071: Domain of un 96.3 0.33 7.2E-06 51.4 18.8 39 483-521 311-349 (374)
263 PF14853 Fis1_TPR_C: Fis1 C-te 96.3 0.012 2.7E-07 44.1 5.9 46 386-437 2-47 (53)
264 KOG2714 SETA binding protein S 96.3 0.019 4.1E-07 60.3 9.1 85 57-145 13-102 (465)
265 KOG1310 WD40 repeat protein [G 96.3 0.0062 1.4E-07 65.3 5.5 107 400-530 389-495 (758)
266 PF13174 TPR_6: Tetratricopept 96.3 0.0048 1E-07 40.7 3.1 32 512-543 1-32 (33)
267 KOG1070 rRNA processing protei 96.2 0.65 1.4E-05 55.7 21.8 227 276-526 1444-1684(1710)
268 PF13176 TPR_7: Tetratricopept 96.2 0.0046 1E-07 42.3 2.9 30 513-542 1-30 (36)
269 PRK10941 hypothetical protein; 96.2 0.017 3.6E-07 58.7 8.0 59 462-520 200-258 (269)
270 PF02259 FAT: FAT domain; Int 96.1 0.86 1.9E-05 47.6 21.1 228 352-585 29-339 (352)
271 PF12968 DUF3856: Domain of Un 96.1 0.19 4E-06 44.1 12.7 102 353-505 8-128 (144)
272 COG4941 Predicted RNA polymera 96.1 0.19 4.1E-06 51.6 14.8 192 335-552 213-407 (415)
273 KOG3617 WD40 and TPR repeat-co 96.0 0.4 8.7E-06 54.4 18.1 249 266-568 810-1083(1416)
274 PF12968 DUF3856: Domain of Un 96.0 0.025 5.5E-07 49.3 7.0 97 265-381 18-129 (144)
275 PF10300 DUF3808: Protein of u 96.0 0.081 1.7E-06 58.3 12.8 82 335-416 250-336 (468)
276 PF04781 DUF627: Protein of un 95.9 0.028 6.2E-07 48.6 7.1 89 454-542 7-110 (111)
277 PF10300 DUF3808: Protein of u 95.9 0.11 2.3E-06 57.4 13.4 113 462-574 252-373 (468)
278 smart00028 TPR Tetratricopepti 95.8 0.013 2.9E-07 37.0 3.8 34 477-510 1-34 (34)
279 COG2976 Uncharacterized protei 95.8 0.48 1E-05 45.3 15.4 82 335-418 106-192 (207)
280 PF02259 FAT: FAT domain; Int 95.8 1.1 2.5E-05 46.7 20.4 171 348-543 142-341 (352)
281 COG0790 FOG: TPR repeat, SEL1 95.8 1.5 3.2E-05 44.8 20.8 83 463-550 175-276 (292)
282 KOG3081 Vesicle coat complex C 95.8 0.56 1.2E-05 46.9 16.2 158 259-419 111-276 (299)
283 KOG1585 Protein required for f 95.8 0.35 7.5E-06 47.7 14.4 163 356-533 75-249 (308)
284 PF13281 DUF4071: Domain of un 95.6 0.84 1.8E-05 48.4 18.0 111 462-587 245-367 (374)
285 PF13176 TPR_7: Tetratricopept 95.6 0.019 4.2E-07 39.2 3.9 28 354-381 1-28 (36)
286 COG2976 Uncharacterized protei 95.6 0.71 1.5E-05 44.1 15.5 65 480-545 129-193 (207)
287 KOG1724 SCF ubiquitin ligase, 95.6 0.085 1.8E-06 49.2 9.2 92 62-156 13-128 (162)
288 PF14561 TPR_20: Tetratricopep 95.5 0.087 1.9E-06 44.2 8.3 76 463-538 8-85 (90)
289 PF05843 Suf: Suppressor of fo 95.5 0.26 5.6E-06 50.5 13.5 84 462-545 55-141 (280)
290 PF14561 TPR_20: Tetratricopep 95.4 0.14 3E-06 43.0 9.2 77 336-412 6-85 (90)
291 KOG3824 Huntingtin interacting 95.3 0.037 8E-07 55.9 6.4 72 482-553 121-193 (472)
292 COG2909 MalT ATP-dependent tra 95.1 6 0.00013 45.9 23.6 204 322-540 422-647 (894)
293 PF13174 TPR_6: Tetratricopept 95.1 0.029 6.2E-07 36.9 3.4 33 478-510 1-33 (33)
294 KOG3617 WD40 and TPR repeat-co 94.9 0.98 2.1E-05 51.5 16.4 55 480-539 941-995 (1416)
295 PF13374 TPR_10: Tetratricopep 94.9 0.035 7.6E-07 38.6 3.7 32 511-542 2-33 (42)
296 KOG1310 WD40 repeat protein [G 94.9 0.13 2.9E-06 55.5 9.5 89 462-550 393-484 (758)
297 KOG0529 Protein geranylgeranyl 94.8 1.9 4E-05 45.8 17.2 173 368-565 91-285 (421)
298 PF05843 Suf: Suppressor of fo 94.7 0.18 3.9E-06 51.7 9.8 119 456-574 13-136 (280)
299 PF03931 Skp1_POZ: Skp1 family 94.6 0.19 4.2E-06 38.9 7.5 56 57-117 3-59 (62)
300 KOG2300 Uncharacterized conser 94.6 8.3 0.00018 41.9 23.1 191 269-515 288-523 (629)
301 PF14853 Fis1_TPR_C: Fis1 C-te 94.5 0.1 2.2E-06 39.2 5.3 32 514-545 4-35 (53)
302 PF08631 SPO22: Meiosis protei 94.5 6.5 0.00014 40.1 21.3 99 256-381 35-150 (278)
303 COG3118 Thioredoxin domain-con 94.4 0.77 1.7E-05 46.6 12.9 124 261-384 139-268 (304)
304 KOG3824 Huntingtin interacting 94.3 0.079 1.7E-06 53.6 5.6 83 367-487 112-194 (472)
305 KOG1586 Protein required for f 94.1 2 4.3E-05 42.3 14.6 176 357-552 39-240 (288)
306 COG4976 Predicted methyltransf 94.0 0.19 4.1E-06 49.1 7.3 55 490-544 8-62 (287)
307 KOG4507 Uncharacterized conser 93.8 0.14 3.1E-06 55.9 6.8 95 451-545 614-710 (886)
308 KOG1585 Protein required for f 93.7 1.9 4.2E-05 42.7 13.7 170 352-540 31-219 (308)
309 COG4976 Predicted methyltransf 93.6 0.11 2.3E-06 50.8 5.0 58 361-418 4-62 (287)
310 PF08424 NRDE-2: NRDE-2, neces 93.6 1.1 2.3E-05 46.9 13.0 28 480-507 157-184 (321)
311 PF11207 DUF2989: Protein of u 93.4 0.82 1.8E-05 44.0 10.6 82 449-531 112-198 (203)
312 KOG0985 Vesicle coat protein c 93.4 16 0.00034 43.3 22.0 185 351-550 1103-1318(1666)
313 COG0790 FOG: TPR repeat, SEL1 93.4 3.4 7.3E-05 42.2 16.2 144 271-418 92-270 (292)
314 KOG4507 Uncharacterized conser 93.3 0.31 6.8E-06 53.3 8.4 121 375-551 202-324 (886)
315 COG3914 Spy Predicted O-linked 93.3 1.2 2.7E-05 49.0 13.0 54 467-522 126-185 (620)
316 COG4941 Predicted RNA polymera 93.3 1.1 2.3E-05 46.2 11.6 128 367-519 271-407 (415)
317 PF08424 NRDE-2: NRDE-2, neces 93.0 2.8 6E-05 43.9 14.9 190 337-586 4-216 (321)
318 COG2912 Uncharacterized conser 92.7 0.36 7.8E-06 48.5 7.4 58 463-520 201-258 (269)
319 COG3914 Spy Predicted O-linked 92.6 2.6 5.7E-05 46.6 14.2 91 461-552 85-182 (620)
320 PF07721 TPR_4: Tetratricopept 92.6 0.15 3.3E-06 32.0 3.0 25 512-536 2-26 (26)
321 PF09613 HrpB1_HrpK: Bacterial 92.5 3.3 7.3E-05 38.5 12.8 70 463-534 30-99 (160)
322 KOG2471 TPR repeat-containing 92.4 0.89 1.9E-05 49.0 10.1 137 355-545 211-369 (696)
323 PF12862 Apc5: Anaphase-promot 92.1 0.52 1.1E-05 39.7 6.6 58 488-545 9-75 (94)
324 PF13374 TPR_10: Tetratricopep 92.0 0.26 5.7E-06 33.9 4.1 29 353-381 3-31 (42)
325 COG2912 Uncharacterized conser 92.0 0.56 1.2E-05 47.2 7.8 63 356-418 185-248 (269)
326 PF10516 SHNi-TPR: SHNi-TPR; 92.0 0.26 5.6E-06 34.2 3.8 30 353-382 2-31 (38)
327 PF10345 Cohesin_load: Cohesin 92.0 27 0.00058 40.0 29.5 280 248-546 51-447 (608)
328 PF04781 DUF627: Protein of un 92.0 0.95 2.1E-05 39.3 8.0 28 295-322 3-30 (111)
329 PF09613 HrpB1_HrpK: Bacterial 91.6 1.3 2.8E-05 41.2 9.1 63 483-545 16-78 (160)
330 KOG1778 CREB binding protein/P 91.5 0.14 3.1E-06 52.9 3.1 139 57-200 29-170 (319)
331 COG5201 SKP1 SCF ubiquitin lig 91.4 1.6 3.4E-05 38.6 8.7 96 56-156 3-123 (158)
332 KOG0529 Protein geranylgeranyl 91.3 9 0.00019 40.8 15.9 142 335-489 92-241 (421)
333 PF10579 Rapsyn_N: Rapsyn N-te 91.2 0.61 1.3E-05 37.8 5.7 65 479-543 8-75 (80)
334 PF04910 Tcf25: Transcriptiona 91.2 11 0.00023 40.2 16.9 157 343-516 31-232 (360)
335 KOG2715 Uncharacterized conser 91.1 1.5 3.2E-05 40.6 8.7 98 54-155 19-122 (210)
336 COG3629 DnrI DNA-binding trans 90.3 1.8 3.9E-05 44.1 9.6 89 477-579 153-241 (280)
337 PF10516 SHNi-TPR: SHNi-TPR; 90.2 0.34 7.3E-06 33.6 3.0 32 511-542 1-32 (38)
338 KOG3364 Membrane protein invol 90.0 1.7 3.7E-05 39.1 7.9 81 352-438 32-118 (149)
339 PF01466 Skp1: Skp1 family, di 89.6 0.76 1.6E-05 37.4 5.2 50 123-172 11-62 (78)
340 COG2909 MalT ATP-dependent tra 89.6 11 0.00024 43.8 15.9 185 361-558 424-628 (894)
341 KOG3616 Selective LIM binding 89.6 17 0.00037 41.4 16.7 22 259-280 664-685 (1636)
342 PF07721 TPR_4: Tetratricopept 88.6 0.55 1.2E-05 29.4 2.9 26 477-502 1-26 (26)
343 PF10345 Cohesin_load: Cohesin 88.3 53 0.0011 37.6 22.9 178 351-540 403-606 (608)
344 KOG0546 HSP90 co-chaperone CPR 88.3 0.41 9E-06 49.6 3.3 60 463-522 295-354 (372)
345 TIGR02561 HrpB1_HrpK type III 88.0 2 4.3E-05 39.4 7.1 63 464-526 31-93 (153)
346 KOG2396 HAT (Half-A-TPR) repea 87.9 2.9 6.3E-05 45.4 9.3 83 463-545 91-174 (568)
347 PRK15180 Vi polysaccharide bio 87.8 4 8.7E-05 44.1 10.2 165 364-555 301-469 (831)
348 KOG0511 Ankyrin repeat protein 87.6 0.41 9E-06 49.6 2.8 84 57-145 152-236 (516)
349 TIGR02561 HrpB1_HrpK type III 87.4 5 0.00011 36.9 9.3 56 490-545 23-78 (153)
350 PRK13184 pknD serine/threonine 87.2 40 0.00088 40.4 19.2 96 322-420 482-587 (932)
351 PF08631 SPO22: Meiosis protei 86.3 35 0.00075 34.8 16.2 165 363-539 4-185 (278)
352 PF09986 DUF2225: Uncharacteri 85.9 18 0.00039 35.5 13.2 96 365-511 90-199 (214)
353 PF00244 14-3-3: 14-3-3 protei 85.1 19 0.00041 35.8 13.2 59 355-413 4-65 (236)
354 PF10579 Rapsyn_N: Rapsyn N-te 84.8 5.4 0.00012 32.5 7.2 59 352-410 6-68 (80)
355 KOG2300 Uncharacterized conser 84.7 56 0.0012 35.8 16.8 179 355-575 326-535 (629)
356 COG4649 Uncharacterized protei 84.5 37 0.00081 32.2 14.6 54 363-416 69-125 (221)
357 PF15015 NYD-SP12_N: Spermatog 84.2 4.8 0.0001 42.9 8.5 107 261-379 181-289 (569)
358 PF10373 EST1_DNA_bind: Est1 D 83.8 3.1 6.7E-05 41.9 7.1 61 496-556 1-62 (278)
359 PF07079 DUF1347: Protein of u 83.4 73 0.0016 34.7 23.4 69 486-555 471-539 (549)
360 PF04910 Tcf25: Transcriptiona 82.7 44 0.00096 35.5 15.5 162 379-552 33-234 (360)
361 PF10373 EST1_DNA_bind: Est1 D 82.7 8 0.00017 38.9 9.7 116 462-577 1-128 (278)
362 PF12862 Apc5: Anaphase-promot 82.2 6.9 0.00015 32.8 7.5 57 362-418 8-74 (94)
363 PF07720 TPR_3: Tetratricopept 82.2 3.5 7.6E-05 28.2 4.5 30 388-417 4-35 (36)
364 KOG0546 HSP90 co-chaperone CPR 82.0 1 2.3E-05 46.7 2.8 50 335-384 292-341 (372)
365 PF09986 DUF2225: Uncharacteri 82.0 6.7 0.00014 38.5 8.3 49 368-416 141-196 (214)
366 KOG3783 Uncharacterized conser 81.2 42 0.00092 37.1 14.5 204 335-541 250-521 (546)
367 KOG3364 Membrane protein invol 80.9 6.1 0.00013 35.7 6.8 75 477-551 32-112 (149)
368 KOG3840 Uncharaterized conserv 80.4 2.2 4.8E-05 43.1 4.3 84 57-141 98-185 (438)
369 PF10255 Paf67: RNA polymerase 80.0 2.2 4.7E-05 45.8 4.4 106 290-417 124-231 (404)
370 COG3629 DnrI DNA-binding trans 79.9 13 0.00027 38.0 9.6 64 351-414 152-216 (280)
371 COG4455 ImpE Protein of avirul 79.8 15 0.00032 36.0 9.5 96 486-581 10-119 (273)
372 KOG3616 Selective LIM binding 79.2 36 0.00077 39.0 13.3 44 508-551 992-1046(1636)
373 PF15015 NYD-SP12_N: Spermatog 77.8 8.9 0.00019 40.9 7.9 42 462-503 247-288 (569)
374 PF11207 DUF2989: Protein of u 77.7 71 0.0015 31.0 14.6 87 315-404 104-197 (203)
375 KOG2723 Uncharacterized conser 75.8 7.5 0.00016 38.1 6.4 93 53-149 6-104 (221)
376 PF07720 TPR_3: Tetratricopept 75.3 5.8 0.00013 27.1 3.9 30 513-542 3-34 (36)
377 PF10602 RPN7: 26S proteasome 75.3 57 0.0012 30.9 12.3 98 257-379 37-140 (177)
378 COG4455 ImpE Protein of avirul 75.2 8.2 0.00018 37.8 6.3 60 360-419 9-69 (273)
379 KOG2396 HAT (Half-A-TPR) repea 75.2 6.4 0.00014 42.9 6.2 50 464-513 126-176 (568)
380 smart00101 14_3_3 14-3-3 homol 74.7 97 0.0021 31.0 15.4 192 355-575 4-227 (244)
381 KOG4390 Voltage-gated A-type K 73.4 11 0.00024 39.5 7.2 86 57-148 42-132 (632)
382 COG3014 Uncharacterized protei 73.2 77 0.0017 33.2 13.0 66 344-418 114-182 (449)
383 PRK13184 pknD serine/threonine 72.6 14 0.0003 44.1 8.8 115 394-524 484-599 (932)
384 KOG4151 Myosin assembly protei 72.3 12 0.00026 43.0 7.7 66 354-419 93-161 (748)
385 KOG1839 Uncharacterized protei 71.9 49 0.0011 40.4 12.9 167 355-540 935-1121(1236)
386 PRK15180 Vi polysaccharide bio 70.4 20 0.00044 38.9 8.4 135 397-555 301-445 (831)
387 KOG0890 Protein kinase of the 70.0 3.6E+02 0.0078 35.6 23.6 312 261-577 1388-1784(2382)
388 KOG0276 Vesicle coat complex C 69.7 68 0.0015 36.1 12.4 48 519-576 729-777 (794)
389 cd02682 MIT_AAA_Arch MIT: doma 69.6 11 0.00024 30.4 5.0 46 483-528 12-64 (75)
390 COG3947 Response regulator con 68.4 15 0.00033 37.5 6.7 57 356-412 283-340 (361)
391 PF10602 RPN7: 26S proteasome 68.2 36 0.00077 32.3 9.1 63 353-415 37-103 (177)
392 KOG4814 Uncharacterized conser 67.5 52 0.0011 37.2 11.0 99 390-540 359-457 (872)
393 KOG2114 Vacuolar assembly/sort 66.4 41 0.00089 39.1 10.3 130 392-535 375-514 (933)
394 KOG0686 COP9 signalosome, subu 65.9 75 0.0016 34.1 11.4 176 221-419 113-309 (466)
395 COG4649 Uncharacterized protei 65.8 90 0.002 29.7 10.7 51 267-317 69-123 (221)
396 KOG2114 Vacuolar assembly/sort 65.5 14 0.00031 42.6 6.6 78 486-574 343-423 (933)
397 cd02679 MIT_spastin MIT: domai 64.8 10 0.00022 31.0 3.9 34 366-413 3-36 (79)
398 KOG3807 Predicted membrane pro 64.3 1.9E+02 0.0041 30.3 14.7 106 392-511 282-396 (556)
399 KOG0985 Vesicle coat protein c 63.5 2.1E+02 0.0046 34.5 15.1 181 342-541 1029-1250(1666)
400 PHA02537 M terminase endonucle 63.4 12 0.00026 37.1 4.9 34 478-511 170-212 (230)
401 PF11822 DUF3342: Domain of un 61.3 3.3 7.1E-05 42.7 0.6 42 154-196 71-112 (317)
402 COG5191 Uncharacterized conser 61.2 8.9 0.00019 39.4 3.6 49 465-513 129-178 (435)
403 PF12854 PPR_1: PPR repeat 61.0 19 0.00041 23.9 4.1 29 382-410 4-32 (34)
404 KOG1839 Uncharacterized protei 60.9 30 0.00065 42.0 8.4 154 259-413 935-1127(1236)
405 COG5191 Uncharacterized conser 57.7 16 0.00034 37.6 4.7 85 465-549 95-184 (435)
406 PRK11619 lytic murein transgly 57.1 3.6E+02 0.0078 31.2 23.2 283 260-547 37-381 (644)
407 PF11846 DUF3366: Domain of un 55.9 25 0.00054 33.6 5.7 51 367-417 126-176 (193)
408 PRK11619 lytic murein transgly 54.8 3.9E+02 0.0085 30.9 19.4 172 361-565 321-513 (644)
409 PHA02537 M terminase endonucle 54.6 98 0.0021 30.7 9.6 36 397-439 190-225 (230)
410 PF07079 DUF1347: Protein of u 54.1 35 0.00076 37.0 6.7 51 360-410 470-520 (549)
411 TIGR03504 FimV_Cterm FimV C-te 53.3 25 0.00054 25.2 3.9 23 357-379 4-26 (44)
412 KOG1538 Uncharacterized conser 52.8 2.2E+02 0.0048 32.5 12.6 173 363-539 611-832 (1081)
413 cd02682 MIT_AAA_Arch MIT: doma 52.7 19 0.0004 29.1 3.5 25 355-379 9-33 (75)
414 PF11846 DUF3366: Domain of un 51.9 37 0.0008 32.4 6.2 45 463-508 131-175 (193)
415 KOG2041 WD40 repeat protein [G 51.3 1.3E+02 0.0028 34.6 10.6 158 372-536 679-877 (1189)
416 KOG4682 Uncharacterized conser 50.8 24 0.00051 37.5 4.7 90 57-161 110-208 (488)
417 KOG1538 Uncharacterized conser 50.1 2.9E+02 0.0062 31.7 12.9 70 341-417 736-805 (1081)
418 KOG2581 26S proteasome regulat 49.6 1.5E+02 0.0031 32.0 10.2 181 352-556 124-330 (493)
419 TIGR03504 FimV_Cterm FimV C-te 49.3 54 0.0012 23.5 5.1 39 389-431 3-41 (44)
420 PF04212 MIT: MIT (microtubule 49.1 25 0.00055 27.4 3.8 26 514-539 8-33 (69)
421 PF00651 BTB: BTB/POZ domain; 48.8 24 0.00051 29.8 3.9 30 158-187 81-110 (111)
422 KOG3807 Predicted membrane pro 48.2 3.5E+02 0.0076 28.4 14.9 82 482-565 280-370 (556)
423 PF04190 DUF410: Protein of un 47.1 3.2E+02 0.0069 27.6 14.3 130 350-492 88-243 (260)
424 cd02677 MIT_SNX15 MIT: domain 46.9 20 0.00042 29.0 2.8 15 525-539 20-34 (75)
425 KOG4279 Serine/threonine prote 45.6 96 0.0021 35.8 8.6 144 366-523 257-412 (1226)
426 KOG4814 Uncharacterized conser 44.7 74 0.0016 36.1 7.5 77 482-558 359-444 (872)
427 PF12854 PPR_1: PPR repeat 44.2 43 0.00094 22.2 3.8 27 351-377 6-32 (34)
428 PF12739 TRAPPC-Trs85: ER-Golg 44.0 3.8E+02 0.0082 29.0 13.2 106 347-453 202-329 (414)
429 COG5536 BET4 Protein prenyltra 43.8 1.7E+02 0.0037 29.9 9.3 61 335-395 91-154 (328)
430 PF13041 PPR_2: PPR repeat fam 43.3 94 0.002 22.2 5.8 37 352-388 3-41 (50)
431 PF04053 Coatomer_WDAD: Coatom 43.1 2E+02 0.0043 31.6 10.7 66 342-415 312-377 (443)
432 KOG4151 Myosin assembly protei 42.3 76 0.0017 36.7 7.5 120 369-514 44-164 (748)
433 PF05053 Menin: Menin; InterP 40.4 83 0.0018 35.1 7.1 43 337-379 298-345 (618)
434 KOG3342 Signal peptidase I [In 40.1 20 0.00044 32.8 2.1 17 57-73 84-101 (180)
435 KOG1938 Protein with predicted 39.7 2.5E+02 0.0054 33.5 11.1 97 485-582 324-441 (960)
436 KOG1463 26S proteasome regulat 39.6 4.9E+02 0.011 27.6 13.9 175 356-549 132-325 (411)
437 COG5107 RNA14 Pre-mRNA 3'-end 39.5 5.6E+02 0.012 28.2 16.2 222 340-563 290-556 (660)
438 PF04212 MIT: MIT (microtubule 38.7 56 0.0012 25.5 4.3 24 356-379 9-32 (69)
439 PF14863 Alkyl_sulf_dimr: Alky 38.0 1.6E+02 0.0034 26.9 7.6 34 385-418 70-103 (141)
440 PF09670 Cas_Cas02710: CRISPR- 36.5 2.1E+02 0.0045 30.7 9.5 62 479-540 133-198 (379)
441 PF13934 ELYS: Nuclear pore co 36.4 4.3E+02 0.0093 26.0 14.8 157 356-580 45-218 (226)
442 PF10255 Paf67: RNA polymerase 36.2 69 0.0015 34.6 5.7 59 354-413 124-192 (404)
443 KOG4014 Uncharacterized conser 36.0 4.1E+02 0.0088 25.6 13.1 172 352-557 34-215 (248)
444 KOG1464 COP9 signalosome, subu 35.9 79 0.0017 32.1 5.6 75 490-565 204-293 (440)
445 PF04053 Coatomer_WDAD: Coatom 35.8 2.8E+02 0.006 30.5 10.4 126 362-538 271-400 (443)
446 PF09670 Cas_Cas02710: CRISPR- 35.2 2.2E+02 0.0048 30.4 9.5 23 395-417 251-273 (379)
447 PF01239 PPTA: Protein prenylt 35.1 1E+02 0.0022 19.8 4.3 24 341-364 6-29 (31)
448 COG2015 Alkyl sulfatase and re 35.0 56 0.0012 35.7 4.7 41 458-498 466-507 (655)
449 cd02681 MIT_calpain7_1 MIT: do 34.9 41 0.00089 27.2 2.9 26 481-506 10-35 (76)
450 PF13041 PPR_2: PPR repeat fam 34.9 97 0.0021 22.1 4.8 36 383-418 1-38 (50)
451 cd02679 MIT_spastin MIT: domai 34.8 57 0.0012 26.6 3.8 29 353-381 9-37 (79)
452 KOG2075 Topoisomerase TOP1-int 34.0 50 0.0011 36.0 4.2 43 155-201 185-227 (521)
453 smart00671 SEL1 Sel1-like repe 34.0 64 0.0014 20.8 3.4 29 512-540 2-34 (36)
454 PF14929 TAF1_subA: TAF RNA Po 33.8 7.4E+02 0.016 28.0 14.3 55 520-576 318-372 (547)
455 cd02683 MIT_1 MIT: domain cont 33.7 56 0.0012 26.4 3.6 19 521-539 16-34 (77)
456 cd02683 MIT_1 MIT: domain cont 33.1 58 0.0013 26.3 3.6 46 480-525 9-61 (77)
457 PF08238 Sel1: Sel1 repeat; I 32.5 67 0.0014 21.3 3.4 30 511-540 1-37 (39)
458 smart00386 HAT HAT (Half-A-TPR 32.4 91 0.002 19.2 3.9 17 494-510 4-20 (33)
459 KOG2997 F-box protein FBX9 [Ge 32.1 71 0.0015 33.1 4.7 36 513-548 21-57 (366)
460 cd09248 BRO1_Rhophilin_1 Prote 32.1 6.2E+02 0.013 27.2 12.0 18 525-542 299-316 (384)
461 PF14863 Alkyl_sulf_dimr: Alky 31.1 1E+02 0.0023 28.0 5.3 53 477-529 70-122 (141)
462 COG3947 Response regulator con 30.6 1.5E+02 0.0032 30.6 6.6 57 480-536 282-338 (361)
463 PF01535 PPR: PPR repeat; Int 30.6 77 0.0017 19.5 3.3 26 355-380 3-28 (31)
464 KOG1464 COP9 signalosome, subu 30.6 1.1E+02 0.0024 31.1 5.6 51 490-540 40-94 (440)
465 PF09797 NatB_MDM20: N-acetylt 30.4 80 0.0017 33.5 5.2 58 462-523 202-259 (365)
466 PF04190 DUF410: Protein of un 30.1 5.8E+02 0.013 25.6 14.3 61 475-535 88-165 (260)
467 cd02681 MIT_calpain7_1 MIT: do 30.0 86 0.0019 25.3 4.0 30 256-285 6-35 (76)
468 TIGR00756 PPR pentatricopeptid 28.8 1.1E+02 0.0025 19.0 4.0 27 355-381 3-29 (35)
469 PF07707 BACK: BTB And C-termi 28.8 65 0.0014 26.7 3.4 28 129-156 2-29 (103)
470 KOG3783 Uncharacterized conser 28.5 8.8E+02 0.019 27.2 16.5 71 348-418 444-524 (546)
471 TIGR02498 type_III_ssaH type I 28.2 2.8E+02 0.0061 22.6 6.5 61 488-552 17-77 (79)
472 KOG4279 Serine/threonine prote 27.8 1.6E+02 0.0035 34.1 6.9 121 445-565 202-341 (1226)
473 KOG3713 Voltage-gated K+ chann 27.7 3.7E+02 0.008 29.6 9.4 81 57-143 33-127 (477)
474 PF13812 PPR_3: Pentatricopept 27.6 1.4E+02 0.0031 18.7 4.2 27 354-380 3-29 (34)
475 smart00745 MIT Microtubule Int 27.0 87 0.0019 24.9 3.7 19 521-539 18-36 (77)
476 PHA02790 Kelch-like protein; P 26.8 1.1E+02 0.0023 34.0 5.5 34 123-156 120-153 (480)
477 PF03745 DUF309: Domain of unk 26.6 1.6E+02 0.0034 22.7 4.8 38 517-554 5-42 (62)
478 PHA03098 kelch-like protein; P 26.6 67 0.0014 35.9 3.9 34 123-156 105-138 (534)
479 PF02064 MAS20: MAS20 protein 26.5 1.3E+02 0.0027 26.8 4.8 32 356-387 67-98 (121)
480 cd02680 MIT_calpain7_2 MIT: do 26.4 57 0.0012 26.3 2.4 26 481-506 10-35 (75)
481 PF06902 Fer4_19: Divergent 4F 26.4 57 0.0012 25.4 2.4 23 558-583 38-60 (64)
482 KOG2422 Uncharacterized conser 26.3 1E+03 0.022 27.1 12.8 149 368-555 254-421 (665)
483 cd02678 MIT_VPS4 MIT: domain c 25.5 98 0.0021 24.7 3.7 24 516-539 11-34 (75)
484 KOG1920 IkappaB kinase complex 25.2 1.3E+03 0.027 28.7 13.7 50 356-412 1003-1053(1265)
485 cd02680 MIT_calpain7_2 MIT: do 25.1 81 0.0017 25.5 3.0 50 518-577 13-62 (75)
486 cd02678 MIT_VPS4 MIT: domain c 25.0 1.2E+02 0.0027 24.1 4.2 29 256-284 6-34 (75)
487 PF07219 HemY_N: HemY protein 24.7 2E+02 0.0044 24.6 5.8 44 510-553 58-102 (108)
488 PF14852 Fis1_TPR_N: Fis1 N-te 24.3 86 0.0019 21.3 2.6 31 512-542 2-35 (35)
489 PRK10316 hypothetical protein; 24.1 6.8E+02 0.015 24.4 11.7 59 354-412 129-196 (209)
490 TIGR02710 CRISPR-associated pr 24.0 4E+02 0.0086 28.6 8.8 135 389-540 134-275 (380)
491 smart00745 MIT Microtubule Int 23.9 1.3E+02 0.0029 23.7 4.2 28 257-284 9-36 (77)
492 cd02677 MIT_SNX15 MIT: domain 23.3 1.4E+02 0.0031 24.0 4.1 30 256-285 6-35 (75)
493 cd02684 MIT_2 MIT: domain cont 23.0 1.4E+02 0.003 23.9 4.1 30 256-285 6-35 (75)
494 COG4259 Uncharacterized protei 22.8 1.8E+02 0.004 24.9 4.8 40 474-513 69-108 (121)
495 cd02684 MIT_2 MIT: domain cont 22.4 1.2E+02 0.0025 24.4 3.5 25 481-505 10-34 (75)
496 KOG2581 26S proteasome regulat 21.6 5E+02 0.011 28.1 8.7 66 255-320 208-279 (493)
497 cd02656 MIT MIT: domain contai 21.5 1.4E+02 0.003 23.6 3.8 31 509-539 4-34 (75)
498 KOG0890 Protein kinase of the 21.2 1.7E+03 0.036 30.0 14.4 132 347-488 1665-1800(2382)
499 smart00875 BACK BTB And C-term 21.2 1.1E+02 0.0023 25.0 3.3 28 129-156 2-29 (101)
500 PF12925 APP_E2: E2 domain of 20.7 2E+02 0.0043 27.7 5.2 65 353-418 99-166 (193)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=6e-35 Score=305.69 Aligned_cols=297 Identities=16% Similarity=0.133 Sum_probs=263.9
Q ss_pred HHHHHHHhhhHHhhhccHHHHHHHHHHHhhcccc--chhhhhHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHh--
Q 007721 255 RMLALHQLGCVMFEREEYKDACYYFEAAADAGHI--YSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSL-- 330 (591)
Q Consensus 255 ~~~a~~~lG~~~~~~g~~~eA~~~f~~Al~~~~~--~a~~~la~~~~~~G~~~~A~~~~~~aI~~~~~~g~a~~~r~~-- 330 (591)
.+++|.+||+++...|+...|+..|++|++++|. +++.++|.|+-..+.++.|+..|.+++..+|+.+.+|.+.+.
T Consensus 217 fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iY 296 (966)
T KOG4626|consen 217 FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIY 296 (966)
T ss_pred eeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEE
Confidence 4678999999999999999999999999999764 689999999999999999999999999999998888877653
Q ss_pred cCCc--HHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCCHHHHHHH
Q 007721 331 YNLG--REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRD 407 (591)
Q Consensus 331 y~~~--~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~-~~~~~~r~~~~~~~g~~~~A~~d 407 (591)
|.+| +-|+..|.+|++++|+++.||.|+|+++.+.|+..||...|++||.+.|+ +++.+++|.++.++|.+++|++.
T Consensus 297 yeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~l 376 (966)
T KOG4626|consen 297 YEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRL 376 (966)
T ss_pred eccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHH
Confidence 2333 88999999999999999999999999999999999999999999999997 89999999999999999999999
Q ss_pred HHHHHhcCCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccchHHHHHHHHHcCCCCchhHhhhHHHH
Q 007721 408 TLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLL 487 (591)
Q Consensus 408 ~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~~P~~~~~~~~~g~~l 487 (591)
|.++++..|.+ .++.+.++.+...+...++| +.+|..||.++|..++++.|+|+++
T Consensus 377 y~~al~v~p~~------aaa~nNLa~i~kqqgnl~~A------------------i~~YkealrI~P~fAda~~NmGnt~ 432 (966)
T KOG4626|consen 377 YLKALEVFPEF------AAAHNNLASIYKQQGNLDDA------------------IMCYKEALRIKPTFADALSNMGNTY 432 (966)
T ss_pred HHHHHhhChhh------hhhhhhHHHHHHhcccHHHH------------------HHHHHHHHhcCchHHHHHHhcchHH
Confidence 99999999998 44555555555555555555 9999999999999999999999999
Q ss_pred HHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHHHHHHHHhhcccccHH-HHHHHHHHhhhcC--CC-CCc
Q 007721 488 LRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE-AFFLKAYILADTN--LD-PES 563 (591)
Q Consensus 488 ~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l~~~~~-~~~~~~~~~~~~~--~~-~~~ 563 (591)
-.+|+..+|+.+|.+|+.++|..+|||.|+|.++-+.|+..+|++.|++|+.|+|+|. ||-+.+-++-=.. .| ..-
T Consensus 433 ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~ 512 (966)
T KOG4626|consen 433 KEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKR 512 (966)
T ss_pred HHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHH
Confidence 9999999999999999999999999999999999999999999999999999999999 9999998874322 22 112
Q ss_pred hhHHHHHHHHHh
Q 007721 564 STYVIQLLEEAL 575 (591)
Q Consensus 564 ~~~~~~~~~~~~ 575 (591)
-.++++..++-+
T Consensus 513 ~~kl~sivrdql 524 (966)
T KOG4626|consen 513 MKKLVSIVRDQL 524 (966)
T ss_pred HHHHHHHHHHHH
Confidence 245666666554
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=8.1e-35 Score=304.69 Aligned_cols=351 Identities=16% Similarity=0.078 Sum_probs=287.3
Q ss_pred HHHHHHhhhhccccchhHHHHHHHHhhcchhhhHHHHHHHHhhhHHhhhccHHHHHHHHHHHhhccc--cchhhhhHHHH
Q 007721 221 YYFLSQVAMEKDRVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGH--IYSLAGLARAK 298 (591)
Q Consensus 221 ~a~Ls~v~~d~~~r~~~~v~lLe~~~~~~~~~~~~~~a~~~lG~~~~~~g~~~eA~~~f~~Al~~~~--~~a~~~la~~~ 298 (591)
+..++.+..+... .+.+..+.+.+++..+++ ..+|.++|.++...|+...|..+|..||.++| ..+...+|.++
T Consensus 119 ysn~aN~~kerg~-~~~al~~y~~aiel~p~f---ida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLl 194 (966)
T KOG4626|consen 119 YSNLANILKERGQ-LQDALALYRAAIELKPKF---IDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLL 194 (966)
T ss_pred HHHHHHHHHHhch-HHHHHHHHHHHHhcCchh---hHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHH
Confidence 4445555554333 555666666677666654 56788888888888888888888888888866 34667788888
Q ss_pred HHhCChHHHHHHHHHHHHhcCCCHHHHHHHHhc----CCcHHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHH
Q 007721 299 YKVGQQYSAYKLINSIISEHKPTGWMYQERSLY----NLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISE 374 (591)
Q Consensus 299 ~~~G~~~~A~~~~~~aI~~~~~~g~a~~~r~~y----~~~~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~ 374 (591)
-..|+..+|..+|.++|+..|.++.+|.+.|-. +....|+..|.+|+.|||.+..||.|+|++|.+.+++++|++.
T Consensus 195 ka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~ 274 (966)
T KOG4626|consen 195 KAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSC 274 (966)
T ss_pred HhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHH
Confidence 888888888888888888888777777666421 2227888888888888888888888888888888888888888
Q ss_pred HHHHHhcCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhhch-HhHHHHHHHhhhc--------ccCch
Q 007721 375 IDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVS-GDHLVKLLNHHVR--------SWSPA 444 (591)
Q Consensus 375 ~~~al~l~p~-~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~~-~~~~~~~l~~~~~--------~~~~a 444 (591)
|.||+.+.|+ ...+-+.|.+|..+|+++-||..|+|+++++|++..++.+.+ +....+.+.+.++ .|.-|
T Consensus 275 Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~ha 354 (966)
T KOG4626|consen 275 YLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHA 354 (966)
T ss_pred HHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccH
Confidence 8888888886 566677888888888888888888888888888888666655 5555565555554 45557
Q ss_pred hhhhhhhhccccccccc-hHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHH
Q 007721 445 DCWIKLYDRWSSVDDIG-SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYD 523 (591)
Q Consensus 445 ~~~~~l~~~~~~~~~~~-al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~ 523 (591)
|++.+++........++ |...|..+|+..|..+.+++|+|.++..+|+.++|+.+|+.|+++.|..++++.|+|..+-.
T Consensus 355 dam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke 434 (966)
T KOG4626|consen 355 DAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKE 434 (966)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHH
Confidence 77788888888888888 88899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHhhcccccHH-HHHHHHHHhhhcCCCCCchhHHHHHHHHHhcCCC
Q 007721 524 TGHREEALSRAEKSISIERTFE-AFFLKAYILADTNLDPESSTYVIQLLEEALRCPS 579 (591)
Q Consensus 524 ~g~~eeAl~~~e~ai~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 579 (591)
+|+.++|++.|+|||.++|.|+ ||-+.|-+.-|++==| .-|+--++|||=--
T Consensus 435 ~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~----~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 435 MGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIP----EAIQSYRTALKLKP 487 (966)
T ss_pred hhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcH----HHHHHHHHHHccCC
Confidence 9999999999999999999999 9999999999887544 45777788887433
No 3
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.97 E-value=1.5e-29 Score=280.70 Aligned_cols=190 Identities=23% Similarity=0.246 Sum_probs=175.2
Q ss_pred CCCCCCceEEEEcCeEEEhhHHHHhhcCHHHHHhhcCCCCCCCCceeEecCCCCCHHHHHHHHHHHhcCCCCCCChhHHH
Q 007721 50 SLEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIVL 129 (591)
Q Consensus 50 ~~~~~~~V~f~v~g~~~~aHr~iLaa~S~yF~amf~~~~~Es~~~~I~l~~~~vs~~~~~~ll~ylYtg~~~~~~~~~v~ 129 (591)
......+|++.+++++|+|||+|||++|+||++||+++++|+.+++|+| .++++++|+.+++|+|||++. ++.+||+
T Consensus 32 ~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l--~~v~~~~l~~ll~y~Yt~~i~-i~~~nVq 108 (571)
T KOG4441|consen 32 EEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINL--EGVDPETLELLLDYAYTGKLE-ISEDNVQ 108 (571)
T ss_pred HhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEE--ecCCHHHHHHHHHHhhcceEE-echHhHH
Confidence 3456677999999999999999999999999999999999999999999 999999999999999999999 9999999
Q ss_pred HHHHHHhhhChHHHHHHHHHHHHhhcCCHHhHHHHHHHHHHhChHHHHHHHHHHHHhhhHhhhCCcccccc--------c
Q 007721 130 ELLSFANRFCCEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVMKI--------F 201 (591)
Q Consensus 130 ~lL~~A~~~~i~~L~~~C~~~L~~~i~~~~n~~~ll~~A~~~~~~~L~~~c~~~i~~n~~~v~~~~~f~~l--------~ 201 (591)
+||.+|++||++.+++.|++||..+++ ++||+.|..+|+.|++++|.+.+..|+.+||.++.++++|++| +
T Consensus 109 ~ll~aA~~lQi~~v~~~C~~fL~~~l~-~~Nclgi~~~a~~~~~~~L~~~a~~~i~~~F~~v~~~eefl~L~~~~l~~ll 187 (571)
T KOG4441|consen 109 ELLEAASLLQIPEVVDACCEFLESQLD-PSNCLGIRRFAELHSCTELLEVADEYILQHFAEVSKTEEFLLLSLEELIGLL 187 (571)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccHHhhCCCHHHHHhhc
Confidence 999999999999999999999999999 9999999999999999999999999999999999999999985 2
Q ss_pred cCchhhhhHhhhcchhHHHHHHHHHhhhhccccchhHHHHHHHHhhcc
Q 007721 202 CSSEATERLANVGHASFLLYYFLSQVAMEKDRVSNTTVMLLERLGECS 249 (591)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~a~Ls~v~~d~~~r~~~~v~lLe~~~~~~ 249 (591)
.+++. .+..+..++.+++.|+.++...|..+...+++. ++++
T Consensus 188 ~~d~l-----~v~~E~~vf~a~~~Wv~~d~~~R~~~~~~ll~~-vr~~ 229 (571)
T KOG4441|consen 188 SSDDL-----NVDSEEEVFEAAMRWVKHDFEEREEHLPALLEA-VRLP 229 (571)
T ss_pred cccCC-----CcCCHHHHHHHHHHHHhcCHhhHHHHHHHHHHh-cCcc
Confidence 22222 467777899999999999988888899999987 5544
No 4
>PHA02790 Kelch-like protein; Provisional
Probab=99.97 E-value=4.8e-30 Score=281.41 Aligned_cols=170 Identities=14% Similarity=0.138 Sum_probs=150.3
Q ss_pred CCCCceEEEEcCeEEEhhHHHHhhcCHHHHHhhcCCCCCCCCceeEecCCCCCHHHHHHHHHHHhcCCCCCCChhHHHHH
Q 007721 52 EEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIVLEL 131 (591)
Q Consensus 52 ~~~~~V~f~v~g~~~~aHr~iLaa~S~yF~amf~~~~~Es~~~~I~l~~~~vs~~~~~~ll~ylYtg~~~~~~~~~v~~l 131 (591)
+...+|++.+| ++|+|||+|||++|+|||+||+++|+|+.+ +|.+...++++++|+.||+|+|||++. ++.+||++|
T Consensus 20 ~~~~~~~~~~~-~~~~~HR~VLAa~S~YFraMF~~~~~Es~~-~v~~~~~~v~~~~l~~lldy~YTg~l~-it~~nV~~l 96 (480)
T PHA02790 20 KKFKTIIEAIG-GNIIVNSTILKKLSPYFRTHLRQKYTKNKD-PVTRVCLDLDIHSLTSIVIYSYTGKVY-IDSHNVVNL 96 (480)
T ss_pred hhhceEEEEcC-cEEeeehhhhhhcCHHHHHHhcCCcccccc-ceEEEecCcCHHHHHHHHHhheeeeEE-EecccHHHH
Confidence 34445766655 599999999999999999999999999965 566521389999999999999999999 999999999
Q ss_pred HHHHhhhChHHHHHHHHHHHHhhcCCHHhHHHHHHHHHHhChHHHHHHHHHHHHhhhHhhhCC--cccccc-----ccCc
Q 007721 132 LSFANRFCCEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYN--PKVMKI-----FCSS 204 (591)
Q Consensus 132 L~~A~~~~i~~L~~~C~~~L~~~i~~~~n~~~ll~~A~~~~~~~L~~~c~~~i~~n~~~v~~~--~~f~~l-----~~~~ 204 (591)
|.+|++||++.+++.|++||.+.|+ ++||+.|+.+|+.|++++|.+.+.+||++||.++.++ ++|++| ++++
T Consensus 97 l~aA~~Lqi~~v~~~C~~fL~~~l~-~~NCl~i~~~A~~y~~~~L~~~a~~fi~~nF~~v~~~~~~ef~~L~~~~lLssd 175 (480)
T PHA02790 97 LRASILTSVEFIIYTCINFILRDFR-KEYCVECYMMGIEYGLSNLLCHTKDFIAKHFLELEDDIIDNFDYLSMKLILESD 175 (480)
T ss_pred HHHHHHhChHHHHHHHHHHHHhhCC-cchHHHHHHHHHHhCHHHHHHHHHHHHHHhHHHHhcccchhhhhCCHHHhcccc
Confidence 9999999999999999999999999 8999999999999999999999999999999999986 788764 3333
Q ss_pred hhhhhHhhhcchhHHHHHHHHHhhhh
Q 007721 205 EATERLANVGHASFLLYYFLSQVAME 230 (591)
Q Consensus 205 ~~~~~~~~~~~~~~~~~a~Ls~v~~d 230 (591)
+. .+..+..++.+++.|+.++
T Consensus 176 ~L-----~v~~Ee~V~eav~~Wl~~~ 196 (480)
T PHA02790 176 EL-----NVPDEDYVVDFVIKWYMKR 196 (480)
T ss_pred cC-----CCccHHHHHHHHHHHHHhh
Confidence 32 3677888999999999975
No 5
>PHA02713 hypothetical protein; Provisional
Probab=99.96 E-value=1.6e-29 Score=281.40 Aligned_cols=192 Identities=10% Similarity=0.149 Sum_probs=166.0
Q ss_pred cCCCCCCceEEEEc-CeEEEhhHHHHhhcCHHHHHhhcCCCCCCC-CceeEecCCCCCHHHHHHHHHHHhcCCCCCCChh
Q 007721 49 LSLEEDDSVTFCVR-DKEISFVRNKIASLSSPFKAMLYGGFVESK-RKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPG 126 (591)
Q Consensus 49 ~~~~~~~~V~f~v~-g~~~~aHr~iLaa~S~yF~amf~~~~~Es~-~~~I~l~~~~vs~~~~~~ll~ylYtg~~~~~~~~ 126 (591)
..++...+|+|+|+ |++|+|||.|||++|+||++||+++|+|+. +++|+| +++++++|+.+|+|+|||+ ++.+
T Consensus 20 r~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l--~~v~~~~~~~ll~y~Yt~~---i~~~ 94 (557)
T PHA02713 20 LDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNL--QMFDKDAVKNIVQYLYNRH---ISSM 94 (557)
T ss_pred HhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEe--ccCCHHHHHHHHHHhcCCC---CCHH
Confidence 34566778999998 899999999999999999999999999875 789999 9999999999999999996 5789
Q ss_pred HHHHHHHHHhhhChHHHHHHHHHHHHhhcCCHHhHHHHHHHHHHhChHHHHHHHHHHHHhhhHhhhCCccccccccCchh
Q 007721 127 IVLELLSFANRFCCEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVMKIFCSSEA 206 (591)
Q Consensus 127 ~v~~lL~~A~~~~i~~L~~~C~~~L~~~i~~~~n~~~ll~~A~~~~~~~L~~~c~~~i~~n~~~v~~~~~f~~l~~~~~~ 206 (591)
+|++||.+|++||++.|++.|++||.+.++ ++||+.++.++..+.+..|.+.|.+||.+||.++.++++|++|.. ...
T Consensus 95 nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~-~~NCl~i~~~~~~~~~~~L~~~a~~~i~~~f~~v~~~~ef~~L~~-~~l 172 (557)
T PHA02713 95 NVIDVLKCADYLLIDDLVTDCESYIKDYTN-HDTCIYMYHRLYEMSHIPIVKYIKRMLMSNIPTLITTDAFKKTVF-EIL 172 (557)
T ss_pred HHHHHHHHHHHHCHHHHHHHHHHHHHhhCC-ccchHHHHHHHHhccchHHHHHHHHHHHHHHHHHhCChhhhhCCH-HHH
Confidence 999999999999999999999999999999 899999999999999999999999999999999999999987621 111
Q ss_pred hhhH-----hhhcchhHHHHHHHHHhhhhccccchhHHHHHHHHhhcc
Q 007721 207 TERL-----ANVGHASFLLYYFLSQVAMEKDRVSNTTVMLLERLGECS 249 (591)
Q Consensus 207 ~~~~-----~~~~~~~~~~~a~Ls~v~~d~~~r~~~~v~lLe~~~~~~ 249 (591)
.+.+ ..+..+..++.+++.|+.++...|. +..++++. +|++
T Consensus 173 ~~lL~~d~~l~v~~Ee~v~eav~~W~~~d~~~r~-~~~~ll~~-VR~~ 218 (557)
T PHA02713 173 FDIISTNDNVYLYREGYKVTILLKWLEYNYITEE-QLLCILSC-IDIQ 218 (557)
T ss_pred HHHhccccccCCCcHHHHHHHHHHHHhcCHHHHH-HHhhhHhh-hhHh
Confidence 1111 2466788899999999999977654 45577765 5554
No 6
>PHA03098 kelch-like protein; Provisional
Probab=99.96 E-value=4e-28 Score=270.68 Aligned_cols=189 Identities=14% Similarity=0.203 Sum_probs=166.7
Q ss_pred CCCCCceEEEE--cCeEEEhhHHHHhhcCHHHHHhhcCCCCCCCCceeEecCCCCCHHHHHHHHHHHhcCCCCCCChhHH
Q 007721 51 LEEDDSVTFCV--RDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIV 128 (591)
Q Consensus 51 ~~~~~~V~f~v--~g~~~~aHr~iLaa~S~yF~amf~~~~~Es~~~~I~l~~~~vs~~~~~~ll~ylYtg~~~~~~~~~v 128 (591)
++..++|+|+| +|++|+|||.||+++|+||++||+++|+ +.+|+| ++ ++++|+.||+|+|||++. ++.+++
T Consensus 6 ~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~---~~~i~l--~~-~~~~~~~~l~y~Ytg~~~-i~~~~~ 78 (534)
T PHA03098 6 LQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK---ENEINL--NI-DYDSFNEVIKYIYTGKIN-ITSNNV 78 (534)
T ss_pred cCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC---CceEEe--cC-CHHHHHHHHHHhcCCceE-EcHHHH
Confidence 45677777776 9999999999999999999999999999 568999 88 999999999999999999 999999
Q ss_pred HHHHHHHhhhChHHHHHHHHHHHHhhcCCHHhHHHHHHHHHHhChHHHHHHHHHHHHhhhHhhhCCccccccccCchhhh
Q 007721 129 LELLSFANRFCCEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVMKIFCSSEATE 208 (591)
Q Consensus 129 ~~lL~~A~~~~i~~L~~~C~~~L~~~i~~~~n~~~ll~~A~~~~~~~L~~~c~~~i~~n~~~v~~~~~f~~l~~~~~~~~ 208 (591)
++||.+|++||++.|+..|++||.+.++ .+||+.++.+|..|++..|.+.|.+||.+||.++.++++|.+|.. ....+
T Consensus 79 ~~ll~~A~~l~~~~l~~~C~~~l~~~l~-~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~l~~-~~l~~ 156 (534)
T PHA03098 79 KDILSIANYLIIDFLINLCINYIIKIID-DNNCIDIYRFSFFYGCKKLYSAAYNYIRNNIELIYNDPDFIYLSK-NELIK 156 (534)
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHhCC-HhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCchhhcCCH-HHHHH
Confidence 9999999999999999999999999999 899999999999999999999999999999999999999988721 11111
Q ss_pred hH----hhhcchhHHHHHHHHHhhhhccccchhHHHHHHHHhhcc
Q 007721 209 RL----ANVGHASFLLYYFLSQVAMEKDRVSNTTVMLLERLGECS 249 (591)
Q Consensus 209 ~~----~~~~~~~~~~~a~Ls~v~~d~~~r~~~~v~lLe~~~~~~ 249 (591)
.+ ..+..|..++.+++.|+.++...|..+..++++. +|++
T Consensus 157 ll~~~~L~v~~E~~v~~av~~W~~~~~~~r~~~~~~ll~~-vR~~ 200 (534)
T PHA03098 157 ILSDDKLNVSSEDVVLEIIIKWLTSKKNNKYKDICLILKV-LRIT 200 (534)
T ss_pred HhcCCCcCcCCHHHHHHHHHHHHhcChhhhHhHHHHHHhh-cccc
Confidence 11 1356777899999999999988877778888876 5554
No 7
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.95 E-value=1.4e-25 Score=254.32 Aligned_cols=293 Identities=16% Similarity=0.102 Sum_probs=243.8
Q ss_pred HHHHhhhhccccchhHHHHHHHHhhcchhhhHHHHHHHHhhhHHhhhccHHHHHHHHHHHhhcccc--chhhhhHHHHHH
Q 007721 223 FLSQVAMEKDRVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHI--YSLAGLARAKYK 300 (591)
Q Consensus 223 ~Ls~v~~d~~~r~~~~v~lLe~~~~~~~~~~~~~~a~~~lG~~~~~~g~~~eA~~~f~~Al~~~~~--~a~~~la~~~~~ 300 (591)
..+...+.... .+.++..++++++..++ ...+.++|.++...|++++|+.++++|+++++. .++..+|.++..
T Consensus 132 ~~G~~~~~~~~-~~~Ai~~y~~al~~~p~----~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 132 EKGNKAYRNKD-FNKAIKLYSKAIECKPD----PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHcCC-HHHHHHHHHHHHhcCCc----hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 45555555444 77889999998887664 356889999999999999999999999999654 478889999999
Q ss_pred hCChHHHHHHHHHHHHhcC------------------------------C------------------------------
Q 007721 301 VGQQYSAYKLINSIISEHK------------------------------P------------------------------ 320 (591)
Q Consensus 301 ~G~~~~A~~~~~~aI~~~~------------------------------~------------------------------ 320 (591)
+|++++|+.++..+....+ .
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccc
Confidence 9999999887765432211 1
Q ss_pred ---CHHHHHHHHh-------cCCcHHHHHHHHHHHHc---CCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCC-hH
Q 007721 321 ---TGWMYQERSL-------YNLGREKIVDLNYASEL---DPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VD 386 (591)
Q Consensus 321 ---~g~a~~~r~~-------y~~~~eA~~dl~~Ai~L---dP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~-~~ 386 (591)
.+.++...+. -...++|+..|++++++ +|+.+.+|.++|.++..+|++++|+..|+++|+++|+ ..
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~ 366 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQ 366 (615)
T ss_pred ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 0111111110 01226888999999986 5899999999999999999999999999999999997 77
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccchHHHH
Q 007721 387 CLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVI 466 (591)
Q Consensus 387 ~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~ 466 (591)
.+..+|.++..+|++++|+..|+++++++|++. .+...++.+....+++++| +.+|
T Consensus 367 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~------~~~~~lg~~~~~~g~~~~A------------------~~~~ 422 (615)
T TIGR00990 367 SYIKRASMNLELGDPDKAEEDFDKALKLNSEDP------DIYYHRAQLHFIKGEFAQA------------------GKDY 422 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHH------------------HHHH
Confidence 888999999999999999999999999999984 3444444444445555555 8899
Q ss_pred HHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHHHHHHHHhhcccccH
Q 007721 467 NQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 544 (591)
Q Consensus 467 ~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l~~~~ 544 (591)
+++++++|.+..+++++|.++.++|++++|+..++++++..|+++++++++|.++..+|++++|+..|++|+.++|.+
T Consensus 423 ~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~ 500 (615)
T TIGR00990 423 QKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKET 500 (615)
T ss_pred HHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999874
No 8
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.95 E-value=7.7e-25 Score=248.23 Aligned_cols=310 Identities=17% Similarity=0.129 Sum_probs=206.2
Q ss_pred HHHHHHHHHhhhhccccchhHHHHHHHHhhcchhhhHHHHHHHHhhhHHhhhccHHHHHHHHHHHhhcccc---------
Q 007721 218 FLLYYFLSQVAMEKDRVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHI--------- 288 (591)
Q Consensus 218 ~~~~a~Ls~v~~d~~~r~~~~v~lLe~~~~~~~~~~~~~~a~~~lG~~~~~~g~~~eA~~~f~~Al~~~~~--------- 288 (591)
.+++..++.+...... .+.++..++.++...++. ..+++.+|.++...|++++|+.+|..++.++..
T Consensus 160 ~~~~~n~a~~~~~l~~-~~~Ai~~~~~al~l~p~~---~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~ 235 (615)
T TIGR00990 160 PVYYSNRAACHNALGD-WEKVVEDTTAALELDPDY---SKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAV 235 (615)
T ss_pred hHHHHHHHHHHHHhCC-HHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHH
Confidence 4556667666665544 778888888888776653 568899999999999999999888665433210
Q ss_pred -----------------------chhhhhHH--------------------------HHH----------HhCChHHHHH
Q 007721 289 -----------------------YSLAGLAR--------------------------AKY----------KVGQQYSAYK 309 (591)
Q Consensus 289 -----------------------~a~~~la~--------------------------~~~----------~~G~~~~A~~ 309 (591)
.++..++. .+. ..+++++|+.
T Consensus 236 ~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~ 315 (615)
T TIGR00990 236 ERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAAR 315 (615)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHH
Confidence 00000111 001 1256788999
Q ss_pred HHHHHHHh---cCCCHHHHHHHHhc----CCcHHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcC
Q 007721 310 LINSIISE---HKPTGWMYQERSLY----NLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFK 382 (591)
Q Consensus 310 ~~~~aI~~---~~~~g~a~~~r~~y----~~~~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~ 382 (591)
.|.+++.. .|+.+.++..++.. +..++|+.+|+++++++|+++.+|.++|.++..+|++++|+..|+++++++
T Consensus 316 ~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 395 (615)
T TIGR00990 316 AFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN 395 (615)
T ss_pred HHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 99999976 36677777777642 344899999999999999999999999999999999999999999999999
Q ss_pred CC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccc
Q 007721 383 LS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIG 461 (591)
Q Consensus 383 p~-~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~ 461 (591)
|+ +..++.+|.++..+|++++|+.+|+++++++|++...+. .++.+.....++++|
T Consensus 396 p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~------~la~~~~~~g~~~eA----------------- 452 (615)
T TIGR00990 396 SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHI------QLGVTQYKEGSIASS----------------- 452 (615)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHH------HHHHHHHHCCCHHHH-----------------
Confidence 96 888999999999999999999999999999999854332 222222222222222
Q ss_pred hHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHH------HHhHHHHHHH-cCCHHHHHHHH
Q 007721 462 SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHER------LVYEGWILYD-TGHREEALSRA 534 (591)
Q Consensus 462 al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a------~~~~G~~l~~-~g~~eeAl~~~ 534 (591)
+..+++++...|.++.+++++|.++..+|++++|+..|++|++++|++... +++.+..++. .|++++|+..+
T Consensus 453 -~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~ 531 (615)
T TIGR00990 453 -MATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLC 531 (615)
T ss_pred -HHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 445555555555555555555555555555555555555555555543221 1222222332 35555555555
Q ss_pred HHhhcccccHH-HHHHHHHHhh
Q 007721 535 EKSISIERTFE-AFFLKAYILA 555 (591)
Q Consensus 535 e~ai~l~~~~~-~~~~~~~~~~ 555 (591)
++|+.++|++. ++...|.++.
T Consensus 532 ~kAl~l~p~~~~a~~~la~~~~ 553 (615)
T TIGR00990 532 EKALIIDPECDIAVATMAQLLL 553 (615)
T ss_pred HHHHhcCCCcHHHHHHHHHHHH
Confidence 55555555444 3444444443
No 9
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.94 E-value=1.1e-26 Score=233.05 Aligned_cols=198 Identities=24% Similarity=0.300 Sum_probs=168.6
Q ss_pred ccCCCCCCceEEEEcCeEEEhhHHHHhhcCHHHHHhhcCCCCCCCCceeEecCCCCCHHHHHHHHHHHhcCCCCC--CCh
Q 007721 48 CLSLEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDL--FCP 125 (591)
Q Consensus 48 ~~~~~~~~~V~f~v~g~~~~aHr~iLaa~S~yF~amf~~~~~Es~~~~I~l~~~~vs~~~~~~ll~ylYtg~~~~--~~~ 125 (591)
...+.+.++|+|+|++++|||||+|||+||.|||+|++|||.|+.+..|.+ ++.+.++|+++|+|+|||++.. ...
T Consensus 38 l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipL--q~t~~eAF~~lLrYiYtg~~~l~~~~e 115 (620)
T KOG4350|consen 38 LFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPL--QETNSEAFRALLRYIYTGKIDLAGVEE 115 (620)
T ss_pred HhhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhccccc--ccccHHHHHHHHHHHhhcceecccchH
Confidence 335666778999999999999999999999999999999999999999999 8888999999999999999884 566
Q ss_pred hHHHHHHHHHhhhChHHHHHHHHHHHHhhcCCHHhHHHHHHHHHHhChHHHHHHHHHHHHhhhHhhhCCccccccccCch
Q 007721 126 GIVLELLSFANRFCCEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVMKIFCSSE 205 (591)
Q Consensus 126 ~~v~~lL~~A~~~~i~~L~~~C~~~L~~~i~~~~n~~~ll~~A~~~~~~~L~~~c~~~i~~n~~~v~~~~~f~~l~~~~~ 205 (591)
+.+++.|.+|++|++..|..+-.+||.+.+. .+|++.+++.|..|+.++|...|+.|+.+|-.+++.+++|..|.. +.
T Consensus 116 d~lld~LslAh~Ygf~~Le~aiSeYl~~iL~-~~NvCmifdaA~ly~l~~Lt~~C~mfmDrnA~~lL~~~sFn~LSk-~s 193 (620)
T KOG4350|consen 116 DILLDYLSLAHRYGFIQLETAISEYLKEILK-NENVCMIFDAAYLYQLTDLTDYCMMFMDRNADQLLEDPSFNRLSK-DS 193 (620)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHc-ccceeeeeeHHHHhcchHHHHHHHHHHhcCHHhhhcCcchhhhhH-HH
Confidence 8899999999999999999999999999999 899999999999999999999999999999999999999988732 22
Q ss_pred hhhhHh---hhcchhHHHHHHHHHhhhhccccchhHHHHHHHHhhcchhhh
Q 007721 206 ATERLA---NVGHASFLLYYFLSQVAMEKDRVSNTTVMLLERLGECSTERW 253 (591)
Q Consensus 206 ~~~~~~---~~~~~~~~~~a~Ls~v~~d~~~r~~~~v~lLe~~~~~~~~~~ 253 (591)
..+.+. ...++..+|.+.++|...+... ....+-.++|+|....
T Consensus 194 L~e~l~RDsFfApE~~IFlAv~~W~~~Nske----~~k~~~~~VRLPLm~l 240 (620)
T KOG4350|consen 194 LKELLARDSFFAPELKIFLAVRSWHQNNSKE----ASKVLLELVRLPLMTL 240 (620)
T ss_pred HHHHHhhhcccchHHHHHHHHHHHHhcCchh----hHHHHHHHHhhhhccH
Confidence 333322 2345566789999998887533 3333444567766543
No 10
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.93 E-value=5.1e-23 Score=234.02 Aligned_cols=316 Identities=9% Similarity=-0.039 Sum_probs=259.7
Q ss_pred chhHHHHHHHHhhcchhhhHHHHHHHHhhhHHhhhccHHHHHHHHHHHhhccc--cchhhhhHHHHHHhCChHHHHHHHH
Q 007721 235 SNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGH--IYSLAGLARAKYKVGQQYSAYKLIN 312 (591)
Q Consensus 235 ~~~~v~lLe~~~~~~~~~~~~~~a~~~lG~~~~~~g~~~eA~~~f~~Al~~~~--~~a~~~la~~~~~~G~~~~A~~~~~ 312 (591)
...+..+++..+.-.++ ...+++.+|+.....|++++|+..|+++++..| ..++..+|.++...|++++|+..+.
T Consensus 58 ~~~A~~l~~~~l~~~p~---~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~ 134 (656)
T PRK15174 58 TDVGLTLLSDRVLTAKN---GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAE 134 (656)
T ss_pred cchhHHHhHHHHHhCCC---chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44566666665544443 356789999999999999999999999999855 4578889999999999999999999
Q ss_pred HHHHhcCCCHHHHHHHHh----cCCcHHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCC-Ch-H
Q 007721 313 SIISEHKPTGWMYQERSL----YNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SV-D 386 (591)
Q Consensus 313 ~aI~~~~~~g~a~~~r~~----y~~~~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p-~~-~ 386 (591)
+++...|+...++..++. .+..++|+..+.+++..+|+.+.++.+.+ .+...|++++|+..++++++.+| +. .
T Consensus 135 ~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~ 213 (656)
T PRK15174 135 QAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQE 213 (656)
T ss_pred HHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchh
Confidence 999999998888877754 23448999999999999999999998765 48899999999999999999986 33 3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccchHHHH
Q 007721 387 CLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVI 466 (591)
Q Consensus 387 ~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~ 466 (591)
.+...+.++...|++++|+..|+++++++|++. .+...++.+.....++++|. ..|+..+
T Consensus 214 ~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~------~~~~~Lg~~l~~~G~~~eA~--------------~~A~~~~ 273 (656)
T PRK15174 214 SAGLAVDTLCAVGKYQEAIQTGESALARGLDGA------ALRRSLGLAYYQSGRSREAK--------------LQAAEHW 273 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHcCCchhhH--------------HHHHHHH
Confidence 334567789999999999999999999999873 33344444444445554421 0248899
Q ss_pred HHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHHHHHHHHhhcccccHH-
Q 007721 467 NQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE- 545 (591)
Q Consensus 467 ~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l~~~~~- 545 (591)
+++++++|+++.++.++|.++..+|++++|+..++++++++|++++++.++|.++..+|++++|++.|+++++.+|+..
T Consensus 274 ~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~ 353 (656)
T PRK15174 274 RHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSK 353 (656)
T ss_pred HHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred HHHHHHHHhhhcCCCCCchhHHHHHHHHHhcCC
Q 007721 546 AFFLKAYILADTNLDPESSTYVIQLLEEALRCP 578 (591)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 578 (591)
++...|.++.... --..-+..++.+++.-
T Consensus 354 ~~~~~a~al~~~G----~~deA~~~l~~al~~~ 382 (656)
T PRK15174 354 WNRYAAAALLQAG----KTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHHHHHHCC----CHHHHHHHHHHHHHhC
Confidence 4555687776553 3445566777777653
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.92 E-value=6.8e-23 Score=232.99 Aligned_cols=285 Identities=14% Similarity=0.029 Sum_probs=246.7
Q ss_pred ccchhHHHHHHHHhhcchhhhHHHHHHHHhhhHHhhhccHHHHHHHHHHHhhccc--cchhhhhHHHHHHhCChHHHHHH
Q 007721 233 RVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGH--IYSLAGLARAKYKVGQQYSAYKL 310 (591)
Q Consensus 233 ~r~~~~v~lLe~~~~~~~~~~~~~~a~~~lG~~~~~~g~~~eA~~~f~~Al~~~~--~~a~~~la~~~~~~G~~~~A~~~ 310 (591)
.+.+.+...++++++..|+. ..++..+|.++...|++++|+..|++++++.| ..++..++.++...|++++|...
T Consensus 90 g~~~~A~~~l~~~l~~~P~~---~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~ 166 (656)
T PRK15174 90 SQPDAVLQVVNKLLAVNVCQ---PEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISL 166 (656)
T ss_pred CCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHH
Confidence 34667889999988876664 56788999999999999999999999999855 34777889999999999999999
Q ss_pred HHHHHHhcCCCHHHHHHHHh---cCCcHHHHHHHHHHHHcCC-CChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCC-h
Q 007721 311 INSIISEHKPTGWMYQERSL---YNLGREKIVDLNYASELDP-TLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-V 385 (591)
Q Consensus 311 ~~~aI~~~~~~g~a~~~r~~---y~~~~eA~~dl~~Ai~LdP-~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~-~ 385 (591)
+.+++...|+.+.++..... .+..++|+..++++++.+| .....+..+|.++.++|++++|+..|+++++++|+ +
T Consensus 167 ~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~ 246 (656)
T PRK15174 167 ARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGA 246 (656)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH
Confidence 99999999987776654422 2333899999999999986 44445566789999999999999999999999996 7
Q ss_pred HHHHHHHHHHHHcCCHHH----HHHHHHHHHhcCCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccc
Q 007721 386 DCLELRAWLFIAADDYES----ALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIG 461 (591)
Q Consensus 386 ~~~~~r~~~~~~~g~~~~----A~~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~ 461 (591)
..++++|.++..+|++++ |+..|+++++++|++ ..+...++.+....+++++|
T Consensus 247 ~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~------~~a~~~lg~~l~~~g~~~eA----------------- 303 (656)
T PRK15174 247 ALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDN------VRIVTLYADALIRTGQNEKA----------------- 303 (656)
T ss_pred HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHCCCHHHH-----------------
Confidence 788889999999999996 899999999999998 34455555555555666666
Q ss_pred hHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHHHHHHHHhhccc
Q 007721 462 SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIE 541 (591)
Q Consensus 462 al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l~ 541 (591)
+..++++++++|.++.++.++|.++..+|++++|+..|+++++.+|+++..+...|.++..+|++++|++.|+++++++
T Consensus 304 -~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 304 -IPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred -HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 8899999999999999999999999999999999999999999999999888889999999999999999999999998
Q ss_pred ccH
Q 007721 542 RTF 544 (591)
Q Consensus 542 ~~~ 544 (591)
|+.
T Consensus 383 P~~ 385 (656)
T PRK15174 383 ASH 385 (656)
T ss_pred hhh
Confidence 873
No 12
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.92 E-value=1.5e-22 Score=244.18 Aligned_cols=307 Identities=13% Similarity=-0.029 Sum_probs=232.0
Q ss_pred chhHHHHHHHHhhcchhhhHHHHHHHHhhhHHhhhccHHHHHHHHHHHhhccccch----------------hhhhHHHH
Q 007721 235 SNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYS----------------LAGLARAK 298 (591)
Q Consensus 235 ~~~~v~lLe~~~~~~~~~~~~~~a~~~lG~~~~~~g~~~eA~~~f~~Al~~~~~~a----------------~~~la~~~ 298 (591)
.+.++..++++++..++. ..+++.+|.++...|++++|+..|+++++..+... ....|.++
T Consensus 285 ~~~A~~~l~~aL~~~P~~---~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~ 361 (1157)
T PRK11447 285 GGKAIPELQQAVRANPKD---SEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAA 361 (1157)
T ss_pred HHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHH
Confidence 567788888877765543 56788999999999999999999999998854321 12346678
Q ss_pred HHhCChHHHHHHHHHHHHhcCCCHHHHHHHHhc----CCcHHHHHHHHHHHHcCCCChHHHHhHHHH-------------
Q 007721 299 YKVGQQYSAYKLINSIISEHKPTGWMYQERSLY----NLGREKIVDLNYASELDPTLSFPYKYRAVA------------- 361 (591)
Q Consensus 299 ~~~G~~~~A~~~~~~aI~~~~~~g~a~~~r~~y----~~~~eA~~dl~~Ai~LdP~~~~ay~~rg~~------------- 361 (591)
...|++++|+..+.+++..+|+...++...+.. +..++|+..|++|++++|++..++.+++.+
T Consensus 362 ~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l 441 (1157)
T PRK11447 362 LKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFI 441 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHH
Confidence 899999999999999999999887777666532 333899999999999999998887665554
Q ss_pred -----------------------------HHHhCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007721 362 -----------------------------KMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLAL 411 (591)
Q Consensus 362 -----------------------------l~~l~~~~eAl~~~~~al~l~p~-~~~~~~r~~~~~~~g~~~~A~~d~~~a 411 (591)
+...|++++|++.|+++++++|+ +..++.++.++..+|++++|+..|+++
T Consensus 442 ~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~a 521 (1157)
T PRK11447 442 ASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRL 521 (1157)
T ss_pred HhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44679999999999999999996 777888999999999999999999999
Q ss_pred HhcCCcchhhhhhchHh-----------HHHH---------------------------HHHhhh-----------cccC
Q 007721 412 LALESNYMMFHGRVSGD-----------HLVK---------------------------LLNHHV-----------RSWS 442 (591)
Q Consensus 412 l~l~P~~~~~~~~~~~~-----------~~~~---------------------------~l~~~~-----------~~~~ 442 (591)
++++|++....-..+.. .... ...... ...+
T Consensus 522 l~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~ 601 (1157)
T PRK11447 522 AQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPP 601 (1157)
T ss_pred HHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCC
Confidence 99999886422111000 0000 000001 1112
Q ss_pred chhhhhhhhhccccccccc-hHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHH
Q 007721 443 PADCWIKLYDRWSSVDDIG-SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWIL 521 (591)
Q Consensus 443 ~a~~~~~l~~~~~~~~~~~-al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l 521 (591)
....++.+.+.+...+++. |+..|+++++++|.++++++++|.++..+|++++|+..++++++.+|+++.++..+|+++
T Consensus 602 ~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~ 681 (1157)
T PRK11447 602 STRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAW 681 (1157)
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 2233344444445556666 777888888888888888888888888888888888888888888888888888888888
Q ss_pred HHcCCHHHHHHHHHHhhcccccH
Q 007721 522 YDTGHREEALSRAEKSISIERTF 544 (591)
Q Consensus 522 ~~~g~~eeAl~~~e~ai~l~~~~ 544 (591)
..+|++++|++.|++++++.|+.
T Consensus 682 ~~~g~~~eA~~~~~~al~~~~~~ 704 (1157)
T PRK11447 682 AALGDTAAAQRTFNRLIPQAKSQ 704 (1157)
T ss_pred HhCCCHHHHHHHHHHHhhhCccC
Confidence 88888888888888888876543
No 13
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.91 E-value=1.9e-21 Score=226.77 Aligned_cols=346 Identities=16% Similarity=0.107 Sum_probs=252.4
Q ss_pred HHHHHHhhhhccccchhHHHHHHHHhhcchhhhHHHHHHHHhhhHHhhhccHHHHHHHHHHHhhccc--cchhhhhHHHH
Q 007721 221 YYFLSQVAMEKDRVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGH--IYSLAGLARAK 298 (591)
Q Consensus 221 ~a~Ls~v~~d~~~r~~~~v~lLe~~~~~~~~~~~~~~a~~~lG~~~~~~g~~~eA~~~f~~Al~~~~--~~a~~~la~~~ 298 (591)
...++.+....+ +.+.+..+++++.+..+.. ...+..++..+...|++++|+..+++++...+ ...+..+|.++
T Consensus 536 ~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 611 (899)
T TIGR02917 536 ILALAGLYLRTG-NEEEAVAWLEKAAELNPQE---IEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQ 611 (899)
T ss_pred HHHHHHHHHHcC-CHHHHHHHHHHHHHhCccc---hhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 344444444433 3566777777766544432 34556677888888888888888888777633 34667778888
Q ss_pred HHhCChHHHHHHHHHHHHhcCCCHHHHHHHHh----cCCcHHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHH
Q 007721 299 YKVGQQYSAYKLINSIISEHKPTGWMYQERSL----YNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISE 374 (591)
Q Consensus 299 ~~~G~~~~A~~~~~~aI~~~~~~g~a~~~r~~----y~~~~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~ 374 (591)
...|++++|+..+.+++...|..+.++...+. .+..++|+..|+++++.+|++..++..++.++...|++++|+..
T Consensus 612 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 691 (899)
T TIGR02917 612 LAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKI 691 (899)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88888888888888888888776666655543 23337888888888888888888888888888888888888888
Q ss_pred HHHHHhcCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhhchHhHHHHHHHhhh--------cccCchh
Q 007721 375 IDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHV--------RSWSPAD 445 (591)
Q Consensus 375 ~~~al~l~p~-~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~--------~~~~~a~ 445 (591)
++++++..|+ +..+..+|.++...|++++|+..|+++++..|+.....+...+....+...... ...+...
T Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 771 (899)
T TIGR02917 692 AKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAV 771 (899)
T ss_pred HHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 8888888775 566667788888888888888888888888887633222221111111111111 1112233
Q ss_pred hhhhhhhccccccccc-hHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHc
Q 007721 446 CWIKLYDRWSSVDDIG-SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDT 524 (591)
Q Consensus 446 ~~~~l~~~~~~~~~~~-al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~ 524 (591)
.+..+.......++.. |+..|+++++.+|.++.+++++|.++..+|+ .+|+..+++++++.|+++..+.++|++++.+
T Consensus 772 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 850 (899)
T TIGR02917 772 LRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEK 850 (899)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc
Confidence 3444444444455666 7889999999999999999999999999999 7799999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhhcccccHH-HHHHHHHHhhhcCCCCCchhHHHHHHHHHh
Q 007721 525 GHREEALSRAEKSISIERTFE-AFFLKAYILADTNLDPESSTYVIQLLEEAL 575 (591)
Q Consensus 525 g~~eeAl~~~e~ai~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (591)
|++++|+..|+++++++|+.. +++..|.++...+- -...+++++++|
T Consensus 851 g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~----~~~A~~~~~~~~ 898 (899)
T TIGR02917 851 GEADRALPLLRKAVNIAPEAAAIRYHLALALLATGR----KAEARKELDKLL 898 (899)
T ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC----HHHHHHHHHHHh
Confidence 999999999999999999755 88888888877643 455566666665
No 14
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=4.8e-22 Score=205.04 Aligned_cols=279 Identities=15% Similarity=0.102 Sum_probs=231.6
Q ss_pred hHHHHHHHHhhhHHhhhccHHHHHHHHHHHhhcccc--chhhhhHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHh
Q 007721 253 WQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHI--YSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSL 330 (591)
Q Consensus 253 ~~~~~a~~~lG~~~~~~g~~~eA~~~f~~Al~~~~~--~a~~~la~~~~~~G~~~~A~~~~~~aI~~~~~~g~a~~~r~~ 330 (591)
...+.++-+.|.-++..|+|++|+++|..||+..|. -.+.+++.+|...|++...+++.+++++++|+...++..|+.
T Consensus 112 ~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~ 191 (606)
T KOG0547|consen 112 LKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRAS 191 (606)
T ss_pred HHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 345677889999999999999999999999999654 356778889999999999999999999999998888888842
Q ss_pred ----cCCcHHHHHHHHHHHHcCCC--------------------------------------------------------
Q 007721 331 ----YNLGREKIVDLNYASELDPT-------------------------------------------------------- 350 (591)
Q Consensus 331 ----y~~~~eA~~dl~~Ai~LdP~-------------------------------------------------------- 350 (591)
.+...+++.|. .|+++.-+
T Consensus 192 A~E~lg~~~eal~D~-tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~ 270 (606)
T KOG0547|consen 192 AHEQLGKFDEALFDV-TVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFD 270 (606)
T ss_pred HHHhhccHHHHHHhh-hHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccccccc
Confidence 11112222111 01111111
Q ss_pred ---------------------------------------------C---------hHHHHhHHHHHHHhCCHHHHHHHHH
Q 007721 351 ---------------------------------------------L---------SFPYKYRAVAKMEEGQIRAAISEID 376 (591)
Q Consensus 351 ---------------------------------------------~---------~~ay~~rg~~l~~l~~~~eAl~~~~ 376 (591)
+ +.++..||.-+.-.|++.+|..+|+
T Consensus 271 ~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~ 350 (606)
T KOG0547|consen 271 NKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFD 350 (606)
T ss_pred CCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHH
Confidence 1 5778889999999999999999999
Q ss_pred HHHhcCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccc
Q 007721 377 RIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWS 455 (591)
Q Consensus 377 ~al~l~p~-~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~ 455 (591)
++|.++|. +..|..|+.+|....+-++-..+|++|..|||+++. +++.++.+...++++++|
T Consensus 351 ~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~d------vYyHRgQm~flL~q~e~A----------- 413 (606)
T KOG0547|consen 351 AAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPD------VYYHRGQMRFLLQQYEEA----------- 413 (606)
T ss_pred HHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCc------hhHhHHHHHHHHHHHHHH-----------
Confidence 99999996 444677999999999999999999999999999955 444455555666777777
Q ss_pred cccccchHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHHHHHHH
Q 007721 456 SVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAE 535 (591)
Q Consensus 456 ~~~~~~al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~~e 535 (591)
+++|+++++++|.++.+|..++.++.|+++++++|..|+.+.+.-|+-+|.+..-|.+|.++++|++|+..|.
T Consensus 414 -------~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD 486 (606)
T KOG0547|consen 414 -------IADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYD 486 (606)
T ss_pred -------HHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHH
Confidence 8899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhccccc------HH-HHHHHHHHhhh
Q 007721 536 KSISIERT------FE-AFFLKAYILAD 556 (591)
Q Consensus 536 ~ai~l~~~------~~-~~~~~~~~~~~ 556 (591)
+||.+.|. .. .+-.||..+.-
T Consensus 487 ~ai~LE~~~~~~~v~~~plV~Ka~l~~q 514 (606)
T KOG0547|consen 487 KAIELEPREHLIIVNAAPLVHKALLVLQ 514 (606)
T ss_pred HHHhhccccccccccchhhhhhhHhhhc
Confidence 99999998 44 66677776654
No 15
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.90 E-value=4.6e-21 Score=231.37 Aligned_cols=306 Identities=12% Similarity=-0.017 Sum_probs=230.7
Q ss_pred HhhhHHhhhccHHHHHHHHHHHhhccc--cchhhhhHHHHHHhCChHHHHHHHHHHHHhcCCCHHH--------------
Q 007721 261 QLGCVMFEREEYKDACYYFEAAADAGH--IYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWM-------------- 324 (591)
Q Consensus 261 ~lG~~~~~~g~~~eA~~~f~~Al~~~~--~~a~~~la~~~~~~G~~~~A~~~~~~aI~~~~~~g~a-------------- 324 (591)
.+|..+...|++++|+..|++++++.| ..++..+|.++..+|++++|+..+.++++..|+....
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 458889999999999999999999855 4578889999999999999999999999998865321
Q ss_pred HHHHH----hcCCcHHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCC-hHHHHHH--------
Q 007721 325 YQERS----LYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELR-------- 391 (591)
Q Consensus 325 ~~~r~----~y~~~~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~-~~~~~~r-------- 391 (591)
...++ .-+..++|+..|+++++++|+++.++.++|.++..+|++++|+..|+++++++|+ ...+..+
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~ 433 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQS 433 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 11111 1123389999999999999999999999999999999999999999999999996 4443322
Q ss_pred ----------------------------------HHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhhchHhHHHHHHHhh
Q 007721 392 ----------------------------------AWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHH 437 (591)
Q Consensus 392 ----------------------------------~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~ 437 (591)
|.++...|++++|+..|+++++++|++...+. .++.+...
T Consensus 434 ~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~------~LA~~~~~ 507 (1157)
T PRK11447 434 PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTY------RLAQDLRQ 507 (1157)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH------HHHHHHHH
Confidence 33455789999999999999999999864222 22222222
Q ss_pred hcccCchh---------------hhhhhhhccccccccc-hHHH------------------------------------
Q 007721 438 VRSWSPAD---------------CWIKLYDRWSSVDDIG-SLAV------------------------------------ 465 (591)
Q Consensus 438 ~~~~~~a~---------------~~~~l~~~~~~~~~~~-al~~------------------------------------ 465 (591)
..++++|. .+..+...+...++.. |+..
T Consensus 508 ~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G 587 (1157)
T PRK11447 508 AGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSG 587 (1157)
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCC
Confidence 22222222 1111111111111111 1111
Q ss_pred ----HHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHHHHHHHHhhccc
Q 007721 466 ----INQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIE 541 (591)
Q Consensus 466 ----~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l~ 541 (591)
..+.++..|.++.+++.+|.++..+|++++|+..|+++++++|++++++.++|.++...|++++|++.+++++++.
T Consensus 588 ~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~ 667 (1157)
T PRK11447 588 KEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATA 667 (1157)
T ss_pred CHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC
Confidence 1233557899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHH-HHHHHHHHhhhcCCCCCchhHHHHHHHHHhc
Q 007721 542 RTFE-AFFLKAYILADTNLDPESSTYVIQLLEEALR 576 (591)
Q Consensus 542 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (591)
|+.. +.+..|.++.... -...-+++++.++.
T Consensus 668 p~~~~~~~~la~~~~~~g----~~~eA~~~~~~al~ 699 (1157)
T PRK11447 668 NDSLNTQRRVALAWAALG----DTAAAQRTFNRLIP 699 (1157)
T ss_pred CCChHHHHHHHHHHHhCC----CHHHHHHHHHHHhh
Confidence 8766 6777777775432 23444555555554
No 16
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.90 E-value=3.9e-21 Score=224.23 Aligned_cols=313 Identities=12% Similarity=0.065 Sum_probs=208.1
Q ss_pred chhHHHHHHHHhhcchhhhHHHHHHHHhhhHHhhhccHHHHHHHHHHHhhccc--cchhhhhHHHHHHhCChHHHHHHHH
Q 007721 235 SNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGH--IYSLAGLARAKYKVGQQYSAYKLIN 312 (591)
Q Consensus 235 ~~~~v~lLe~~~~~~~~~~~~~~a~~~lG~~~~~~g~~~eA~~~f~~Al~~~~--~~a~~~la~~~~~~G~~~~A~~~~~ 312 (591)
.+.+...++++++..+.. ..+++.+|.++...|++++|+..|++++...+ ..++..++.++...|++++|...+.
T Consensus 481 ~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 557 (899)
T TIGR02917 481 LAKAREAFEKALSIEPDF---FPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLE 557 (899)
T ss_pred HHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 445555666555443332 34556667777777777777777777766633 3355566667777777777777777
Q ss_pred HHHHhcCCCHHHHHHHHh----cCCcHHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCC-hHH
Q 007721 313 SIISEHKPTGWMYQERSL----YNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDC 387 (591)
Q Consensus 313 ~aI~~~~~~g~a~~~r~~----y~~~~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~-~~~ 387 (591)
+++...|.....+...+. .+..++|+..++++++.+|.+..+|..+|.++...|++++|+..|+++++.+|+ +..
T Consensus 558 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 637 (899)
T TIGR02917 558 KAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALA 637 (899)
T ss_pred HHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Confidence 777776655444433322 123377888888888888888888888888888888888888888888888885 666
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhhchHhHHHHHHHhhhcccC---------------chhhhhhhhh
Q 007721 388 LELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWS---------------PADCWIKLYD 452 (591)
Q Consensus 388 ~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~---------------~a~~~~~l~~ 452 (591)
+...+.++...|++++|+..|+++++.+|++.... .....+.....+++ ....|..++.
T Consensus 638 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~------~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 711 (899)
T TIGR02917 638 LLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQ------IGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGD 711 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH------HHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHH
Confidence 77788888888888888888888888888864321 11111111112221 2223333333
Q ss_pred ccccccccc-hHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHHH
Q 007721 453 RWSSVDDIG-SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEAL 531 (591)
Q Consensus 453 ~~~~~~~~~-al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl 531 (591)
.+...+++. |+..+.+++...|.+ ..+++.+.++.++|++++|+..++++++..|++..+++.+|.++..+|++++|+
T Consensus 712 ~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~ 790 (899)
T TIGR02917 712 LYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAI 790 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 333345555 667777777777776 566677777777777777777777777777777777777777777777777777
Q ss_pred HHHHHhhcccccHH-HHHHHHHHhhhc
Q 007721 532 SRAEKSISIERTFE-AFFLKAYILADT 557 (591)
Q Consensus 532 ~~~e~ai~l~~~~~-~~~~~~~~~~~~ 557 (591)
..|++++.+.|++. ++...|.++...
T Consensus 791 ~~~~~~~~~~p~~~~~~~~l~~~~~~~ 817 (899)
T TIGR02917 791 KHYRTVVKKAPDNAVVLNNLAWLYLEL 817 (899)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 77777777777766 555556555543
No 17
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.90 E-value=8.7e-22 Score=229.68 Aligned_cols=266 Identities=13% Similarity=0.017 Sum_probs=227.1
Q ss_pred HHHHHHHhhhHHhhhccHHHHHHHHHHHhhccccc-hhhhhHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHh---
Q 007721 255 RMLALHQLGCVMFEREEYKDACYYFEAAADAGHIY-SLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSL--- 330 (591)
Q Consensus 255 ~~~a~~~lG~~~~~~g~~~eA~~~f~~Al~~~~~~-a~~~la~~~~~~G~~~~A~~~~~~aI~~~~~~g~a~~~r~~--- 330 (591)
...+++++|.++.. ++..+|+..|.+++...|.. ...++|.++...|++++|+..+.+++...|.... +...+.
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a-~~~la~all 553 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNED-LLAAANTAQ 553 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHH-HHHHHHHHH
Confidence 34678999999887 89999999999998885532 3445677778999999999999998776554332 233221
Q ss_pred -cCCcHHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 007721 331 -YNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTL 409 (591)
Q Consensus 331 -y~~~~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~~~~~~~r~~~~~~~g~~~~A~~d~~ 409 (591)
-+..++|...|+++++++|++...+..++..+..+|++++|+..|+++++++|++..+.++|.++.++|++++|+..|+
T Consensus 554 ~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~ 633 (987)
T PRK09782 554 AAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLR 633 (987)
T ss_pred HCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 2344899999999999999999888888888888899999999999999999998888899999999999999999999
Q ss_pred HHHhcCCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccchHHHHHHHHHcCCCCchhHhhhHHHHHH
Q 007721 410 ALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLR 489 (591)
Q Consensus 410 ~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~~P~~~~~~~~~g~~l~~ 489 (591)
++++++|++. .+...++.+.....++++| +..++++++++|+++.+++++|.++..
T Consensus 634 ~AL~l~Pd~~------~a~~nLG~aL~~~G~~eeA------------------i~~l~~AL~l~P~~~~a~~nLA~al~~ 689 (987)
T PRK09782 634 AALELEPNNS------NYQAALGYALWDSGDIAQS------------------REMLERAHKGLPDDPALIRQLAYVNQR 689 (987)
T ss_pred HHHHhCCCCH------HHHHHHHHHHHHCCCHHHH------------------HHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999984 3444444444444455555 889999999999999999999999999
Q ss_pred hCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHHHHHHHHhhcccccHHH
Q 007721 490 LNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEA 546 (591)
Q Consensus 490 l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l~~~~~~ 546 (591)
+|++++|+..|++|++++|+++......|+++....+++.|.+.|+|+..++|..-|
T Consensus 690 lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~a 746 (987)
T PRK09782 690 LDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSSI 746 (987)
T ss_pred CCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccchh
Confidence 999999999999999999999999999999999999999999999999999998873
No 18
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=5.4e-21 Score=197.38 Aligned_cols=319 Identities=15% Similarity=0.127 Sum_probs=248.0
Q ss_pred chhHHHHHHHHhhcchhhhHHHHHHHHhhhHHhhhccHHHHHHHHHHHhhccccc--hhhhhHHHHHHhCChHHHHHHHH
Q 007721 235 SNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIY--SLAGLARAKYKVGQQYSAYKLIN 312 (591)
Q Consensus 235 ~~~~v~lLe~~~~~~~~~~~~~~a~~~lG~~~~~~g~~~eA~~~f~~Al~~~~~~--a~~~la~~~~~~G~~~~A~~~~~ 312 (591)
.+.++.....++.+-++. .+-|-|+.-+|...|++++-++...+|++++|.| ++.-+++++-.+|++.+|+.+.+
T Consensus 131 Y~eAIkyY~~AI~l~p~e---piFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~t 207 (606)
T KOG0547|consen 131 YDEAIKYYTQAIELCPDE---PIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVT 207 (606)
T ss_pred HHHHHHHHHHHHhcCCCC---chhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhh
Confidence 666778888877755542 3556788888888899999999999999987766 55566777888888888865532
Q ss_pred H------------------HH-----------------------------------------------------------
Q 007721 313 S------------------II----------------------------------------------------------- 315 (591)
Q Consensus 313 ~------------------aI----------------------------------------------------------- 315 (591)
- .+
T Consensus 208 v~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l 287 (606)
T KOG0547|consen 208 VLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALEAL 287 (606)
T ss_pred HHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHHHH
Confidence 0 00
Q ss_pred -------------------Hh-----cCC--------CHHHHHHHHh----cCCcHHHHHHHHHHHHcCCCChHHHHhHH
Q 007721 316 -------------------SE-----HKP--------TGWMYQERSL----YNLGREKIVDLNYASELDPTLSFPYKYRA 359 (591)
Q Consensus 316 -------------------~~-----~~~--------~g~a~~~r~~----y~~~~eA~~dl~~Ai~LdP~~~~ay~~rg 359 (591)
.. ..+ .+.++..||- .+..-+|..+|+++|+|+|.+...|..||
T Consensus 288 ~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a 367 (606)
T KOG0547|consen 288 EKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRA 367 (606)
T ss_pred HhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHH
Confidence 00 000 1222333321 12226788999999999999999999999
Q ss_pred HHHHHhCCHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhhch-HhHHHHHHHhh
Q 007721 360 VAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVS-GDHLVKLLNHH 437 (591)
Q Consensus 360 ~~l~~l~~~~eAl~~~~~al~l~p-~~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~~-~~~~~~~l~~~ 437 (591)
.+|+++++.++-..+|++|..+|| +++.||.||.++.-+++|++|+.||+++++|+|.++..+.+.+ +.+..+.+...
T Consensus 368 ~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~ 447 (606)
T KOG0547|consen 368 AAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAES 447 (606)
T ss_pred HHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999 5899999999999999999999999999999999987555544 45555555544
Q ss_pred hcccCc--------hhhhhhhhhccccccccc-hHHHHHHHHHcCCC------CchhHhhhHHHHHH-hCCHHHHHHHHH
Q 007721 438 VRSWSP--------ADCWIKLYDRWSSVDDIG-SLAVINQMLINDPG------KSFLRFRQSLLLLR-LNCQKAAMRCLR 501 (591)
Q Consensus 438 ~~~~~~--------a~~~~~l~~~~~~~~~~~-al~~~~~al~~~P~------~~~~~~~~g~~l~~-l~~~~eA~~~~~ 501 (591)
-..+++ .++..=..+.+-...+++ |+..|+.|+++.|. ++-.+..+|.++.+ .+++.+|+..++
T Consensus 448 m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~ 527 (606)
T KOG0547|consen 448 MKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLR 527 (606)
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHH
Confidence 443333 344444445555557777 89999999999999 88888889887765 688889999999
Q ss_pred HHHhcCCchHHHHHhHHHHHHHcCCHHHHHHHHHHhhcccccHHHHHHHHHHhhhc
Q 007721 502 LARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADT 557 (591)
Q Consensus 502 ~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l~~~~~~~~~~~~~~~~~ 557 (591)
+|++++|..-.|+-.+|.+..+.|+.+||+..||+|+.+-++-.. -+.+|.|++-
T Consensus 528 KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt~~E-~~~a~s~aeA 582 (606)
T KOG0547|consen 528 KAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLARTESE-MVHAYSLAEA 582 (606)
T ss_pred HHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHH
Confidence 999999999999999999999999999999999999999887652 3456666553
No 19
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=1.7e-20 Score=200.49 Aligned_cols=288 Identities=15% Similarity=0.068 Sum_probs=232.3
Q ss_pred HHHHhhhHHhhhccHHHHHHHHHHHhhcccc--chhhhhHHHHHHhCChHHHHHHHHHHHHhcCCC-----------HHH
Q 007721 258 ALHQLGCVMFEREEYKDACYYFEAAADAGHI--YSLAGLARAKYKVGQQYSAYKLINSIISEHKPT-----------GWM 324 (591)
Q Consensus 258 a~~~lG~~~~~~g~~~eA~~~f~~Al~~~~~--~a~~~la~~~~~~G~~~~A~~~~~~aI~~~~~~-----------g~a 324 (591)
..+.+|..+...|++++|+..|.++++.++. .++..+|.++...|+++.|+..+.+++...+.. |.+
T Consensus 37 ~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~ 116 (389)
T PRK11788 37 RDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQD 116 (389)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 4567799999999999999999999999654 467788999999999999999999988753221 333
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCCh-H-----HHHHHHHHHHHc
Q 007721 325 YQERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSV-D-----CLELRAWLFIAA 398 (591)
Q Consensus 325 ~~~r~~y~~~~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~~-~-----~~~~r~~~~~~~ 398 (591)
|...+.+ ++|...|+++++.+|....++..++.++...|++++|+..++++++..|.+ . .+..+|.++...
T Consensus 117 ~~~~g~~---~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 193 (389)
T PRK11788 117 YLKAGLL---DRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALAR 193 (389)
T ss_pred HHHCCCH---HHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhC
Confidence 3433333 999999999999999999999999999999999999999999999988852 1 234578889999
Q ss_pred CCHHHHHHHHHHHHhcCCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccchHHHHHHHHHcCCCC-c
Q 007721 399 DDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGK-S 477 (591)
Q Consensus 399 g~~~~A~~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~~P~~-~ 477 (591)
|++++|+..|+++++++|++. .+...++.+....+++++| +..++++++.+|.+ .
T Consensus 194 ~~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A------------------~~~~~~~~~~~p~~~~ 249 (389)
T PRK11788 194 GDLDAARALLKKALAADPQCV------RASILLGDLALAQGDYAAA------------------IEALERVEEQDPEYLS 249 (389)
T ss_pred CCHHHHHHHHHHHHhHCcCCH------HHHHHHHHHHHHCCCHHHH------------------HHHHHHHHHHChhhHH
Confidence 999999999999999999863 3444455455555555555 88999999999987 4
Q ss_pred hhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHHHHHHHHhhcccccHHHHH-HHHHHhhh
Q 007721 478 FLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFF-LKAYILAD 556 (591)
Q Consensus 478 ~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l~~~~~~~~-~~~~~~~~ 556 (591)
.++..++.++..+|++++|+..++++++..|+.. .+..+|.++...|++++|++.++++++..|+...+. +-++.++.
T Consensus 250 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~-~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~ 328 (389)
T PRK11788 250 EVLPKLMECYQALGDEAEGLEFLRRALEEYPGAD-LLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAE 328 (389)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch-HHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhc
Confidence 6788999999999999999999999999999875 459999999999999999999999999999998665 33344332
Q ss_pred cCCCCCchhHHHHHHHHHh
Q 007721 557 TNLDPESSTYVIQLLEEAL 575 (591)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~ 575 (591)
.. ..-....+.++|+.+
T Consensus 329 ~~--~g~~~~a~~~~~~~~ 345 (389)
T PRK11788 329 AE--EGRAKESLLLLRDLV 345 (389)
T ss_pred cC--CccchhHHHHHHHHH
Confidence 21 222334455555554
No 20
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.87 E-value=4.5e-20 Score=215.42 Aligned_cols=289 Identities=11% Similarity=0.003 Sum_probs=220.6
Q ss_pred HHHHHHhhhHHhhhccHHHHHHHHHHHhhccc-c---c-hhhhhHHHHHHhCC-------------------------h-
Q 007721 256 MLALHQLGCVMFEREEYKDACYYFEAAADAGH-I---Y-SLAGLARAKYKVGQ-------------------------Q- 304 (591)
Q Consensus 256 ~~a~~~lG~~~~~~g~~~eA~~~f~~Al~~~~-~---~-a~~~la~~~~~~G~-------------------------~- 304 (591)
..++.+++....+.|++++|...|+.+....+ . . ...+++.++...+. .
T Consensus 376 ~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 455 (987)
T PRK09782 376 LTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLP 455 (987)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhh
Confidence 34677888899999999999999998887421 1 1 12244444444433 2
Q ss_pred --HHHHHHHHHHHHhcCC--CHHHHHHHHhc---CCcHHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHH
Q 007721 305 --YSAYKLINSIISEHKP--TGWMYQERSLY---NLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDR 377 (591)
Q Consensus 305 --~~A~~~~~~aI~~~~~--~g~a~~~r~~y---~~~~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~ 377 (591)
..+...+.+++...|. .+.+|++.+.. +...+|+..|.+++...|+.. .+..+|.++...|++++|+..|++
T Consensus 456 ~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rk 534 (987)
T PRK09782 456 GIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQK 534 (987)
T ss_pred hhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHH
Confidence 2234445556666677 88888888653 233689999999999999854 466667777899999999999999
Q ss_pred HHhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhhch--------HhHHHHHHHhhhcccCchhhhhh
Q 007721 378 IIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVS--------GDHLVKLLNHHVRSWSPADCWIK 449 (591)
Q Consensus 378 al~l~p~~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~~--------~~~~~~~l~~~~~~~~~a~~~~~ 449 (591)
++...|.+..+...|.++...|++++|+..|+++++++|++........ ...-...++..++.-..++.|..
T Consensus 535 a~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~ 614 (987)
T PRK09782 535 ISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVA 614 (987)
T ss_pred HhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHH
Confidence 9888777666778899999999999999999999999998865332211 11111222222322223666777
Q ss_pred hhhccccccccc-hHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHH
Q 007721 450 LYDRWSSVDDIG-SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHRE 528 (591)
Q Consensus 450 l~~~~~~~~~~~-al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~e 528 (591)
++..+...++.+ |+..++++++++|+++.+++++|.+|..+|++++|+..|++|++++|+++++++++|+++..+|+++
T Consensus 615 LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~ 694 (987)
T PRK09782 615 RATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMA 694 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 777777777777 8889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccccHH
Q 007721 529 EALSRAEKSISIERTFE 545 (591)
Q Consensus 529 eAl~~~e~ai~l~~~~~ 545 (591)
+|+..|++|++++|++.
T Consensus 695 eA~~~l~~Al~l~P~~a 711 (987)
T PRK09782 695 ATQHYARLVIDDIDNQA 711 (987)
T ss_pred HHHHHHHHHHhcCCCCc
Confidence 99999999999999874
No 21
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=1.2e-20 Score=201.95 Aligned_cols=265 Identities=14% Similarity=0.147 Sum_probs=220.7
Q ss_pred HHHHHhhhHHhhhccHHHHHHHHHHHhhccccc--hhhhhHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHhcC--
Q 007721 257 LALHQLGCVMFEREEYKDACYYFEAAADAGHIY--SLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYN-- 332 (591)
Q Consensus 257 ~a~~~lG~~~~~~g~~~eA~~~f~~Al~~~~~~--a~~~la~~~~~~G~~~~A~~~~~~aI~~~~~~g~a~~~r~~y~-- 332 (591)
-.+.++|..|++.++|++|..+|+.+-.+.|-. ..--...++..+.+..+--......|.-.|+.+..|...|.+.
T Consensus 354 wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSL 433 (638)
T KOG1126|consen 354 WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSL 433 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhh
Confidence 456789999999999999999999876664421 1111222222222222222334456777787777776665422
Q ss_pred --CcHHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCCHHHHHHHHH
Q 007721 333 --LGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTL 409 (591)
Q Consensus 333 --~~~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~-~~~~~~r~~~~~~~g~~~~A~~d~~ 409 (591)
..+.|++.|.+|+++||+++++|.-+|-=+.....++.|+..|++||..+|. +.+||..|.+|.++++++.|.-.|+
T Consensus 434 Qkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fq 513 (638)
T KOG1126|consen 434 QKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQ 513 (638)
T ss_pred hhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHH
Confidence 2288999999999999999999999999999999999999999999999994 8999999999999999999999999
Q ss_pred HHHhcCCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccchHHHHHHHHHcCCCCchhHhhhHHHHHH
Q 007721 410 ALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLR 489 (591)
Q Consensus 410 ~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~~P~~~~~~~~~g~~l~~ 489 (591)
+|++++|.+ .....-.+...+..++.++| |..|++|+-+||.++...|.+|.+|.-
T Consensus 514 kA~~INP~n------svi~~~~g~~~~~~k~~d~A------------------L~~~~~A~~ld~kn~l~~~~~~~il~~ 569 (638)
T KOG1126|consen 514 KAVEINPSN------SVILCHIGRIQHQLKRKDKA------------------LQLYEKAIHLDPKNPLCKYHRASILFS 569 (638)
T ss_pred hhhcCCccc------hhHHhhhhHHHHHhhhhhHH------------------HHHHHHHHhcCCCCchhHHHHHHHHHh
Confidence 999999987 44445555566666666666 899999999999999999999999999
Q ss_pred hCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHHHHHHHHhhcccccHH
Q 007721 490 LNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE 545 (591)
Q Consensus 490 l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l~~~~~ 545 (591)
+++++||+.-++..-++.|++.-+++-+|.++-.+|+.+.|+..|.=|+.++|.=+
T Consensus 570 ~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 570 LGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred hcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 99999999999999999999999999999999999999999999999999999754
No 22
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.86 E-value=8e-20 Score=188.58 Aligned_cols=188 Identities=15% Similarity=0.071 Sum_probs=146.4
Q ss_pred HHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007721 335 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLA 413 (591)
Q Consensus 335 ~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~-~~~~~~r~~~~~~~g~~~~A~~d~~~al~ 413 (591)
++|+.+|++|++++|+++.+|+++|.++..+|++++|++.|+++++++|+ ...+.++|.++...|++++|+.+|+++++
T Consensus 81 ~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~ 160 (296)
T PRK11189 81 ALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ 160 (296)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 78888999999999999999999999999999999999999999999996 67788999999999999999999999999
Q ss_pred cCCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccchHHHHHHHHHcCCCCchhHhhhHHHHHHhCCH
Q 007721 414 LESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQ 493 (591)
Q Consensus 414 l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~ 493 (591)
++|++.. + ... ..+.....++++ |+..+.+++...+. ..|. .+.+...+|+.
T Consensus 161 ~~P~~~~---~--~~~--~~l~~~~~~~~~------------------A~~~l~~~~~~~~~--~~~~-~~~~~~~lg~~ 212 (296)
T PRK11189 161 DDPNDPY---R--ALW--LYLAESKLDPKQ------------------AKENLKQRYEKLDK--EQWG-WNIVEFYLGKI 212 (296)
T ss_pred hCCCCHH---H--HHH--HHHHHccCCHHH------------------HHHHHHHHHhhCCc--cccH-HHHHHHHccCC
Confidence 9999842 0 000 001111222333 47777776654332 2333 46777778876
Q ss_pred HHH--H----HHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHHHHHHHHhhcccc-cHHHHHHH
Q 007721 494 KAA--M----RCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIER-TFEAFFLK 550 (591)
Q Consensus 494 ~eA--~----~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l~~-~~~~~~~~ 550 (591)
.++ + ..++.+.+++|+.+++++++|.++..+|++++|+..|++|++++| +|..+...
T Consensus 213 ~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~ 276 (296)
T PRK11189 213 SEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYA 276 (296)
T ss_pred CHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 443 3 223344578888999999999999999999999999999999996 88755443
No 23
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.85 E-value=4.3e-20 Score=183.36 Aligned_cols=220 Identities=19% Similarity=0.203 Sum_probs=184.3
Q ss_pred cCCCHHHHHHHHhcCCcHHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCChHH-HHHHHHHHH
Q 007721 318 HKPTGWMYQERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDC-LELRAWLFI 396 (591)
Q Consensus 318 ~~~~g~a~~~r~~y~~~~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~~~~-~~~r~~~~~ 396 (591)
+-.+|..+..|+.+ .+|+..|-.|+++||++..+++.||.+|+.+|+-..|+.+++++|+++|+.-+ -..||.+++
T Consensus 41 hlElGk~lla~~Q~---sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vll 117 (504)
T KOG0624|consen 41 HLELGKELLARGQL---SDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLL 117 (504)
T ss_pred HHHHHHHHHHhhhH---HHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhh
Confidence 33466777777777 99999999999999999999999999999999999999999999999999654 456999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccc-hHHHHHHHHHcCCC
Q 007721 397 AADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIG-SLAVINQMLINDPG 475 (591)
Q Consensus 397 ~~g~~~~A~~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~-al~~~~~al~~~P~ 475 (591)
++|.+++|.+||+++|.-+|+. ......++.+....+.|..- +-.-.|..-+|.. ++..+++.|++.||
T Consensus 118 K~Gele~A~~DF~~vl~~~~s~------~~~~eaqskl~~~~e~~~l~----~ql~s~~~~GD~~~ai~~i~~llEi~~W 187 (504)
T KOG0624|consen 118 KQGELEQAEADFDQVLQHEPSN------GLVLEAQSKLALIQEHWVLV----QQLKSASGSGDCQNAIEMITHLLEIQPW 187 (504)
T ss_pred hcccHHHHHHHHHHHHhcCCCc------chhHHHHHHHHhHHHHHHHH----HHHHHHhcCCchhhHHHHHHHHHhcCcc
Confidence 9999999999999999999975 22222222222222222222 1112233345666 77899999999999
Q ss_pred CchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHHHHHHHHhhcccccHH---HHHHH
Q 007721 476 KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE---AFFLK 550 (591)
Q Consensus 476 ~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l~~~~~---~~~~~ 550 (591)
++.++..++.++..-|.+..|+.+.+.|-++..|+.+.++..+.++|..|+.+.++..-++-+.++|+-- +||-|
T Consensus 188 da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKk 265 (504)
T KOG0624|consen 188 DASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKK 265 (504)
T ss_pred hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999977 55543
No 24
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.84 E-value=2.1e-18 Score=184.35 Aligned_cols=291 Identities=16% Similarity=0.116 Sum_probs=229.0
Q ss_pred HHHHHHhhhhccccchhHHHHHHHHhhcchhhhHHHHHHHHhhhHHhhhccHHHHHHHHHHHhhcccc------chhhhh
Q 007721 221 YYFLSQVAMEKDRVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHI------YSLAGL 294 (591)
Q Consensus 221 ~a~Ls~v~~d~~~r~~~~v~lLe~~~~~~~~~~~~~~a~~~lG~~~~~~g~~~eA~~~f~~Al~~~~~------~a~~~l 294 (591)
.++.+-.....+. .+.+...++++++..++. ..++..+|.++...|++++|+..+++++..+.. ..+..+
T Consensus 38 ~y~~g~~~~~~~~-~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~L 113 (389)
T PRK11788 38 DYFKGLNFLLNEQ-PDKAIDLFIEMLKVDPET---VELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQEL 113 (389)
T ss_pred HHHHHHHHHhcCC-hHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 3444444433333 566888998888776543 456788999999999999999999998876421 356778
Q ss_pred HHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHh----cCCcHHHHHHHHHHHHcCCCCh-----HHHHhHHHHHHHh
Q 007721 295 ARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSL----YNLGREKIVDLNYASELDPTLS-----FPYKYRAVAKMEE 365 (591)
Q Consensus 295 a~~~~~~G~~~~A~~~~~~aI~~~~~~g~a~~~r~~----y~~~~eA~~dl~~Ai~LdP~~~-----~ay~~rg~~l~~l 365 (591)
|.++...|+++.|...+.+++...|....++...+. .+..++|+..+.++++.+|... ..|..+|.++.+.
T Consensus 114 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 193 (389)
T PRK11788 114 GQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALAR 193 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999987776555554432 1233899999999999998764 3677899999999
Q ss_pred CCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhhchHhHHHHHHHhhhcccCch
Q 007721 366 GQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPA 444 (591)
Q Consensus 366 ~~~~eAl~~~~~al~l~p~-~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a 444 (591)
|++++|+..|+++++.+|+ ...+..+|.++...|++++|+..|+++++.+|++.. .+...+..+.....++++
T Consensus 194 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-----~~~~~l~~~~~~~g~~~~- 267 (389)
T PRK11788 194 GDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLS-----EVLPKLMECYQALGDEAE- 267 (389)
T ss_pred CCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHH-----HHHHHHHHHHHHcCCHHH-
Confidence 9999999999999999996 677888999999999999999999999999998631 122222222223333333
Q ss_pred hhhhhhhhccccccccchHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHH-
Q 007721 445 DCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYD- 523 (591)
Q Consensus 445 ~~~~~l~~~~~~~~~~~al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~- 523 (591)
|+..++++++.+|+...+ ..+|.++.+.|++++|++.++++++..|++.......+..+..
T Consensus 268 -----------------A~~~l~~~~~~~p~~~~~-~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~ 329 (389)
T PRK11788 268 -----------------GLEFLRRALEEYPGADLL-LALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEA 329 (389)
T ss_pred -----------------HHHHHHHHHHhCCCchHH-HHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhcc
Confidence 488999999999987554 8999999999999999999999999999998776555554432
Q ss_pred -cCCHHHHHHHHHHhhc
Q 007721 524 -TGHREEALSRAEKSIS 539 (591)
Q Consensus 524 -~g~~eeAl~~~e~ai~ 539 (591)
.|+.++|+..+++.++
T Consensus 330 ~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 330 EEGRAKESLLLLRDLVG 346 (389)
T ss_pred CCccchhHHHHHHHHHH
Confidence 5699999998887775
No 25
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.84 E-value=1.6e-18 Score=200.95 Aligned_cols=307 Identities=12% Similarity=-0.002 Sum_probs=194.6
Q ss_pred cchhHHHHHHHHhhcchhhhHHHHHHHHhhhHHhhhccHHHHHHHHHHHhhcccc--chhhhhHHHHHHhCChHHHHHHH
Q 007721 234 VSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHI--YSLAGLARAKYKVGQQYSAYKLI 311 (591)
Q Consensus 234 r~~~~v~lLe~~~~~~~~~~~~~~a~~~lG~~~~~~g~~~eA~~~f~~Al~~~~~--~a~~~la~~~~~~G~~~~A~~~~ 311 (591)
+.+.+...+++++...++.. . +..+|.++...|++++|+..|++++++.|. .++..++.++...|..+.|+..+
T Consensus 98 ~~~eA~~~l~~~l~~~P~~~---~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l 173 (765)
T PRK10049 98 QYDEALVKAKQLVSGAPDKA---N-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAI 173 (765)
T ss_pred CHHHHHHHHHHHHHhCCCCH---H-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHH
Confidence 36678888888776655542 3 677888888999999999999999888553 35556677777777777676666
Q ss_pred HHHHHhcCCC-------HHHHHHHHhc----------CCcHHHHHHHHHHHHcCCCChH-------HHHhHHHHHHHhCC
Q 007721 312 NSIISEHKPT-------GWMYQERSLY----------NLGREKIVDLNYASELDPTLSF-------PYKYRAVAKMEEGQ 367 (591)
Q Consensus 312 ~~aI~~~~~~-------g~a~~~r~~y----------~~~~eA~~dl~~Ai~LdP~~~~-------ay~~rg~~l~~l~~ 367 (591)
.++.. .|.. ......+..+ ...++|++.++++++..|.++. ++..+..++...|+
T Consensus 174 ~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~ 252 (765)
T PRK10049 174 DDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDR 252 (765)
T ss_pred HhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhh
Confidence 54443 2221 1111111000 0014455566666654332222 22222334455566
Q ss_pred HHHHHHHHHHHHhcCCC-hH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchh----hhhh--------chHhHHHHH
Q 007721 368 IRAAISEIDRIIVFKLS-VD-CLELRAWLFIAADDYESALRDTLALLALESNYMM----FHGR--------VSGDHLVKL 433 (591)
Q Consensus 368 ~~eAl~~~~~al~l~p~-~~-~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~----~~~~--------~~~~~~~~~ 433 (591)
+++|++.|+++++..|. |. .....+.++..+|++++|+..|+++++.+|.... .... .........
T Consensus 253 ~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~ 332 (765)
T PRK10049 253 YKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTV 332 (765)
T ss_pred HHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 66666666666665432 22 1122355666666666666666666666654410 0000 000111111
Q ss_pred HHhhhccc----------------Cchhhhhhhhhccccccccc-hHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHH
Q 007721 434 LNHHVRSW----------------SPADCWIKLYDRWSSVDDIG-SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAA 496 (591)
Q Consensus 434 l~~~~~~~----------------~~a~~~~~l~~~~~~~~~~~-al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA 496 (591)
+....+.. +..+.+..+...+...++.. |+..++++++..|+++.+++++|.++...|++++|
T Consensus 333 l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A 412 (765)
T PRK10049 333 TAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAA 412 (765)
T ss_pred HHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Confidence 11111110 01112222333333335555 78999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHHHHHHHHhhcccccHH
Q 007721 497 MRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE 545 (591)
Q Consensus 497 ~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l~~~~~ 545 (591)
+..+++|++++|++.+.++.+|.++..+|++++|.+.++++++..|+..
T Consensus 413 ~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~ 461 (765)
T PRK10049 413 ENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDP 461 (765)
T ss_pred HHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence 9999999999999999999999999999999999999999999999999
No 26
>PLN02789 farnesyltranstransferase
Probab=99.82 E-value=1.2e-18 Score=180.44 Aligned_cols=195 Identities=12% Similarity=0.078 Sum_probs=153.8
Q ss_pred HHHHHHHHHHHHcCCCChHHHHhHHHHHHHhC-CHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCCH--HHHHHHHHH
Q 007721 335 REKIVDLNYASELDPTLSFPYKYRAVAKMEEG-QIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDY--ESALRDTLA 410 (591)
Q Consensus 335 ~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~-~~~eAl~~~~~al~l~p~-~~~~~~r~~~~~~~g~~--~~A~~d~~~ 410 (591)
++|+..++++|+++|++..+|.+||.++..+| ++++|+..++++|+.+|+ ..+|+.|++++..+|+. ++++..+++
T Consensus 54 erAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~k 133 (320)
T PLN02789 54 PRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRK 133 (320)
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHH
Confidence 77888888888888888888888888888888 578888888888888885 78888888888888874 678888888
Q ss_pred HHhcCCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccchHHHHHHHHHcCCCCchhHhhhHHHHHHh
Q 007721 411 LLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRL 490 (591)
Q Consensus 411 al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~~P~~~~~~~~~g~~l~~l 490 (591)
+++++|++. .+...++-+......|+++ +..++++|+.||.+..+|+++|.++..+
T Consensus 134 al~~dpkNy------~AW~~R~w~l~~l~~~~ee------------------L~~~~~~I~~d~~N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 134 ILSLDAKNY------HAWSHRQWVLRTLGGWEDE------------------LEYCHQLLEEDVRNNSAWNQRYFVITRS 189 (320)
T ss_pred HHHhCcccH------HHHHHHHHHHHHhhhHHHH------------------HHHHHHHHHHCCCchhHHHHHHHHHHhc
Confidence 888888873 3444444444444444444 8888899999999999999999988876
Q ss_pred ---CCH----HHHHHHHHHHHhcCCchHHHHHhHHHHHHH----cCCHHHHHHHHHHhhcccccHH---HHHHHHHH
Q 007721 491 ---NCQ----KAAMRCLRLARNHSSSEHERLVYEGWILYD----TGHREEALSRAEKSISIERTFE---AFFLKAYI 553 (591)
Q Consensus 491 ---~~~----~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~----~g~~eeAl~~~e~ai~l~~~~~---~~~~~~~~ 553 (591)
|.. ++++....+++.++|+|..+++++|+++.. +++..+|+...++++..+|+.. +|.+.-|.
T Consensus 190 ~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~ 266 (320)
T PLN02789 190 PLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLC 266 (320)
T ss_pred cccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHH
Confidence 333 467888889999999999999999999988 5677889999999988877544 55555554
No 27
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.82 E-value=1.9e-17 Score=191.91 Aligned_cols=308 Identities=12% Similarity=0.007 Sum_probs=220.0
Q ss_pred HHHHHHhhhHHhhhccHHHHHHHHHHHhhccc--cchhhhhHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHh---
Q 007721 256 MLALHQLGCVMFEREEYKDACYYFEAAADAGH--IYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSL--- 330 (591)
Q Consensus 256 ~~a~~~lG~~~~~~g~~~eA~~~f~~Al~~~~--~~a~~~la~~~~~~G~~~~A~~~~~~aI~~~~~~g~a~~~r~~--- 330 (591)
..++..+|..+...|++++|+..|+++++..| ..+..+++.++...|++.+|+..+.+++...|+.+. +...+.
T Consensus 49 a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~ 127 (765)
T PRK10049 49 ARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYK 127 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHH
Confidence 44566777777778888888888888777743 345667777777788888888888888888777766 655543
Q ss_pred -cCCcHHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCC------------------------------------------
Q 007721 331 -YNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQ------------------------------------------ 367 (591)
Q Consensus 331 -y~~~~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~------------------------------------------ 367 (591)
.+..++|+..|+++++++|+++.++..+|.++...++
T Consensus 128 ~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~ 207 (765)
T PRK10049 128 RAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKE 207 (765)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhH
Confidence 2333777888888888888888777777777654443
Q ss_pred -H---HHHHHHHHHHHhc---CCChHHHH-----HHHHHHHHcCCHHHHHHHHHHHHhcC---CcchhhhhhchHhHHHH
Q 007721 368 -I---RAAISEIDRIIVF---KLSVDCLE-----LRAWLFIAADDYESALRDTLALLALE---SNYMMFHGRVSGDHLVK 432 (591)
Q Consensus 368 -~---~eAl~~~~~al~l---~p~~~~~~-----~r~~~~~~~g~~~~A~~d~~~al~l~---P~~~~~~~~~~~~~~~~ 432 (591)
+ ++|++.++++++. +|+....+ .+..++...|++++|+..|+++++.. |++.... .+
T Consensus 208 r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~--------la 279 (765)
T PRK10049 208 RYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRW--------VA 279 (765)
T ss_pred HHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHH--------HH
Confidence 3 5688999999976 34321111 22344578899999999999999996 5442211 11
Q ss_pred HHHhhhcccCchh-------------------hhhhhhhccccccccc-hHHHHHHHHHcCCCC---------------c
Q 007721 433 LLNHHVRSWSPAD-------------------CWIKLYDRWSSVDDIG-SLAVINQMLINDPGK---------------S 477 (591)
Q Consensus 433 ~l~~~~~~~~~a~-------------------~~~~l~~~~~~~~~~~-al~~~~~al~~~P~~---------------~ 477 (591)
.+....+++++|. .+..++..+...++++ |+..++++++.+|.. .
T Consensus 280 ~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~ 359 (765)
T PRK10049 280 SAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWL 359 (765)
T ss_pred HHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHH
Confidence 2222222233332 2233333334446666 788999999998842 3
Q ss_pred hhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHHHHHHHHhhcccccHH-HHHHHHHHhhh
Q 007721 478 FLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE-AFFLKAYILAD 556 (591)
Q Consensus 478 ~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l~~~~~-~~~~~~~~~~~ 556 (591)
.++..+|.++...|++++|+..++++++..|++++++..+|.++...|++++|++.+++|++++|+.. ..+.+|++..+
T Consensus 360 ~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~ 439 (765)
T PRK10049 360 QGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALD 439 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999976 88888887665
Q ss_pred cCCCCCchhHHHHHHHHHhc
Q 007721 557 TNLDPESSTYVIQLLEEALR 576 (591)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~ 576 (591)
.. .=.....+++++++
T Consensus 440 ~~----~~~~A~~~~~~ll~ 455 (765)
T PRK10049 440 LQ----EWRQMDVLTDDVVA 455 (765)
T ss_pred hC----CHHHHHHHHHHHHH
Confidence 44 13334444444443
No 28
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.82 E-value=2.8e-18 Score=177.13 Aligned_cols=234 Identities=12% Similarity=-0.020 Sum_probs=172.3
Q ss_pred cHHHHHHHHHHHhhc---cc---cchhhhhHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHhc----CCcHHHHHH
Q 007721 271 EYKDACYYFEAAADA---GH---IYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLY----NLGREKIVD 340 (591)
Q Consensus 271 ~~~eA~~~f~~Al~~---~~---~~a~~~la~~~~~~G~~~~A~~~~~~aI~~~~~~g~a~~~r~~y----~~~~eA~~d 340 (591)
+.+.++..+.++|.. ++ ...+..+|.++...|++..|+..|.++++.+|+.+.+|..+|.+ +..++|+..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 456667777777753 11 23566778888888888888888888888888888888777642 344899999
Q ss_pred HHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCcch
Q 007721 341 LNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLAL-ESNYM 419 (591)
Q Consensus 341 l~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~~~~~~~r~~~~~~~g~~~~A~~d~~~al~l-~P~~~ 419 (591)
|++|++++|++..+|.++|.++...|++++|+..|+++++++|+.........+....+++++|+..|++++.. +|+..
T Consensus 121 ~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~ 200 (296)
T PRK11189 121 FDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQW 200 (296)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCcccc
Confidence 99999999999999999999999999999999999999999996432222223456788999999999877654 44431
Q ss_pred hhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccchHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHH
Q 007721 420 MFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRC 499 (591)
Q Consensus 420 ~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~ 499 (591)
+. ........+++.++.+.. +...++++++++|..+++|+++|.++.++|++++|+..
T Consensus 201 ---~~-------~~~~~~lg~~~~~~~~~~------------~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~ 258 (296)
T PRK11189 201 ---GW-------NIVEFYLGKISEETLMER------------LKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAAL 258 (296)
T ss_pred ---HH-------HHHHHHccCCCHHHHHHH------------HHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 11 112222333333211000 12234556678899999999999999999999999999
Q ss_pred HHHHHhcCC-chHHHHHhHHHHHHHcCC
Q 007721 500 LRLARNHSS-SEHERLVYEGWILYDTGH 526 (591)
Q Consensus 500 ~~~Al~l~p-~~~~a~~~~G~~l~~~g~ 526 (591)
|++|++++| ++.+..+-+..+....++
T Consensus 259 ~~~Al~~~~~~~~e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 259 FKLALANNVYNFVEHRYALLELALLGQD 286 (296)
T ss_pred HHHHHHhCCchHHHHHHHHHHHHHHHhh
Confidence 999999996 888887777666555444
No 29
>PRK12370 invasion protein regulator; Provisional
Probab=99.81 E-value=2.2e-18 Score=192.76 Aligned_cols=167 Identities=10% Similarity=-0.015 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007721 335 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLA 413 (591)
Q Consensus 335 ~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~-~~~~~~r~~~~~~~g~~~~A~~d~~~al~ 413 (591)
.+|...+++|++++|+++.+|..+|.++..+|++++|++.|++|++++|+ +..++.+|.++..+|++++|+..|+++++
T Consensus 321 ~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~ 400 (553)
T PRK12370 321 IKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK 400 (553)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 34555555555555555555555555555555555555555555555553 44444555555555555555555555555
Q ss_pred cCCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccchHHHHHHHHHcC-CCCchhHhhhHHHHHHhCC
Q 007721 414 LESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLIND-PGKSFLRFRQSLLLLRLNC 492 (591)
Q Consensus 414 l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~~-P~~~~~~~~~g~~l~~l~~ 492 (591)
++|++..+ ......+.....++++ |+..+++++... |+++.++.++|.++..+|+
T Consensus 401 l~P~~~~~------~~~~~~~~~~~g~~ee------------------A~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~ 456 (553)
T PRK12370 401 LDPTRAAA------GITKLWITYYHTGIDD------------------AIRLGDELRSQHLQDNPILLSMQVMFLSLKGK 456 (553)
T ss_pred cCCCChhh------HHHHHHHHHhccCHHH------------------HHHHHHHHHHhccccCHHHHHHHHHHHHhCCC
Confidence 55554211 0011101111111222 244455555442 4455555555555555555
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcC
Q 007721 493 QKAAMRCLRLARNHSSSEHERLVYEGWILYDTG 525 (591)
Q Consensus 493 ~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g 525 (591)
+++|.+.+++++...|++..+...++..+...|
T Consensus 457 ~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 489 (553)
T PRK12370 457 HELARKLTKEISTQEITGLIAVNLLYAEYCQNS 489 (553)
T ss_pred HHHHHHHHHHhhhccchhHHHHHHHHHHHhccH
Confidence 555555555555555555555555555444444
No 30
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=2.9e-18 Score=183.75 Aligned_cols=258 Identities=16% Similarity=0.117 Sum_probs=214.3
Q ss_pred cHHHHHHHHHHHhhccc---cchhhhhHHHHHHhCChHHHHHHHHHHHHhcCC--CHHHHHHHHhcCC-cHHHHHHH-HH
Q 007721 271 EYKDACYYFEAAADAGH---IYSLAGLARAKYKVGQQYSAYKLINSIISEHKP--TGWMYQERSLYNL-GREKIVDL-NY 343 (591)
Q Consensus 271 ~~~eA~~~f~~Al~~~~---~~a~~~la~~~~~~G~~~~A~~~~~~aI~~~~~--~g~a~~~r~~y~~-~~eA~~dl-~~ 343 (591)
+..+|+..|.+ +-..+ ......+|+.++.+++|++|...|+.+=...|- .|.-++.-..+=. .+-++..+ ..
T Consensus 334 ~~~~A~~~~~k-lp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEK-LPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHh-hHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 44899999988 43321 245667899999999999999999998777663 1211111111100 02234333 34
Q ss_pred HHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhh
Q 007721 344 ASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFH 422 (591)
Q Consensus 344 Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~-~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~ 422 (591)
.+.-||+.++.|...|+++--+++++.||..|.|||++||+ ..+|.+.|-=+.....+|.|...|++|+.++|.+
T Consensus 413 Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rh---- 488 (638)
T KOG1126|consen 413 LIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRH---- 488 (638)
T ss_pred HHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchh----
Confidence 78999999999999999999999999999999999999997 5667788888899999999999999999999987
Q ss_pred hhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccchHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHH
Q 007721 423 GRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRL 502 (591)
Q Consensus 423 ~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~ 502 (591)
-.|++.+|++...+++++.| .-.|.+|++++|.+.....-.|-.+.++|+.++|++.|++
T Consensus 489 --YnAwYGlG~vy~Kqek~e~A------------------e~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~ 548 (638)
T KOG1126|consen 489 --YNAWYGLGTVYLKQEKLEFA------------------EFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEK 548 (638)
T ss_pred --hHHHHhhhhheeccchhhHH------------------HHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHH
Confidence 34566666666666666666 6689999999999999999999999999999999999999
Q ss_pred HHhcCCchHHHHHhHHHHHHHcCCHHHHHHHHHHhhcccccHH-HHHHHHHH
Q 007721 503 ARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE-AFFLKAYI 553 (591)
Q Consensus 503 Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l~~~~~-~~~~~~~~ 553 (591)
|+-++|.++-..+++|.+|+.+|+++||+..+|+--++.|+-. .|+|-|-+
T Consensus 549 A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki 600 (638)
T KOG1126|consen 549 AIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKI 600 (638)
T ss_pred HHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988 89987754
No 31
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=99.80 E-value=5.8e-19 Score=182.19 Aligned_cols=177 Identities=19% Similarity=0.234 Sum_probs=150.7
Q ss_pred CCCCCCceEEEEcC-----eEEEhhHHHHhhcCHHHHHhhcCCCCCCCCceeEecCCCCCHHHHHHHHHHHhcCCCCCCC
Q 007721 50 SLEEDDSVTFCVRD-----KEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFC 124 (591)
Q Consensus 50 ~~~~~~~V~f~v~g-----~~~~aHr~iLaa~S~yF~amf~~~~~Es~~~~I~l~~~~vs~~~~~~ll~ylYtg~~~~~~ 124 (591)
+++...+|.|+||+ +.|||||.+||..|+.|.+||+|++.|+...+|.+ +++.|.+|..+|+|+|++.+. +.
T Consensus 110 ~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~l--pdvepaaFl~~L~flYsdev~-~~ 186 (521)
T KOG2075|consen 110 NNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRL--PDVEPAAFLAFLRFLYSDEVK-LA 186 (521)
T ss_pred cCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeec--CCcChhHhHHHHHHHhcchhh-hh
Confidence 44555669999974 58999999999999999999999999997789999 999999999999999999999 99
Q ss_pred hhHHHHHHHHHhhhChHHHHHHHHHHHHhhcCCHHhHHHHHHH-HHHhChHHHHHHHHHHHHhhhHhhhCCccccccccC
Q 007721 125 PGIVLELLSFANRFCCEEMKSACDAHLASLVGDIEDALILIDY-GLEERATLLVASCLQVLLRELPSSLYNPKVMKIFCS 203 (591)
Q Consensus 125 ~~~v~~lL~~A~~~~i~~L~~~C~~~L~~~i~~~~n~~~ll~~-A~~~~~~~L~~~c~~~i~~n~~~v~~~~~f~~l~~~ 203 (591)
.++++.+|.+|++|-++.|.+.|.+||+..+. ..|.+..+-- |..++-++|.+.|++.|..++.+.+..+.|.++-+.
T Consensus 187 ~dtvi~tl~~AkKY~VpaLer~CVkflr~~l~-~~naf~~L~q~A~lf~ep~Li~~c~e~id~~~~~al~~EGf~did~~ 265 (521)
T KOG2075|consen 187 ADTVITTLYAAKKYLVPALERQCVKFLRKNLM-ADNAFLELFQRAKLFDEPSLISICLEVIDKSFEDALTPEGFCDIDST 265 (521)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhhcCHHHHHHHHHHhhhHHHhhhCccceeehhhH
Confidence 99999999999999999999999999999998 5666655555 999999999999999999999999999999887322
Q ss_pred ch------hhhhHhhhcchhHHHHHHHHHhhhhcc
Q 007721 204 SE------ATERLANVGHASFLLYYFLSQVAMEKD 232 (591)
Q Consensus 204 ~~------~~~~~~~~~~~~~~~~a~Ls~v~~d~~ 232 (591)
-+ .++.+ .+ .++.++.+.++|+.....
T Consensus 266 ~dt~~evl~r~~l-~~-~e~~lfeA~lkw~~~e~~ 298 (521)
T KOG2075|consen 266 RDTYEEVLRRDTL-EA-REFRLFEAALKWAEAECQ 298 (521)
T ss_pred HHHHHHHHhhccc-ch-hHHHHHHHHHhhccCcch
Confidence 11 11111 11 256778899999886544
No 32
>PRK12370 invasion protein regulator; Provisional
Probab=99.79 E-value=1.4e-17 Score=186.46 Aligned_cols=216 Identities=14% Similarity=0.007 Sum_probs=180.2
Q ss_pred HHHHHHHHHHHHcCCCChHHHHhHHHHHHHhC---------CHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCCHHHH
Q 007721 335 REKIVDLNYASELDPTLSFPYKYRAVAKMEEG---------QIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESA 404 (591)
Q Consensus 335 ~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~---------~~~eAl~~~~~al~l~p~-~~~~~~r~~~~~~~g~~~~A 404 (591)
++|+..|++|+++||+++.+|.++|.++..++ ++++|+..+++|++++|+ +.++..+|.++...|++++|
T Consensus 278 ~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A 357 (553)
T PRK12370 278 QQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVG 357 (553)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHH
Confidence 78999999999999999999999999887543 489999999999999996 78888899999999999999
Q ss_pred HHHHHHHHhcCCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccchHHHHHHHHHcCCCCchhHhhhH
Q 007721 405 LRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQS 484 (591)
Q Consensus 405 ~~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~~P~~~~~~~~~g 484 (591)
+..|++|++++|++.. +...++.+....+++++| +..++++++++|.++..++.++
T Consensus 358 ~~~~~~Al~l~P~~~~------a~~~lg~~l~~~G~~~eA------------------i~~~~~Al~l~P~~~~~~~~~~ 413 (553)
T PRK12370 358 SLLFKQANLLSPISAD------IKYYYGWNLFMAGQLEEA------------------LQTINECLKLDPTRAAAGITKL 413 (553)
T ss_pred HHHHHHHHHhCCCCHH------HHHHHHHHHHHCCCHHHH------------------HHHHHHHHhcCCCChhhHHHHH
Confidence 9999999999999853 455566666777888888 8899999999999999888888
Q ss_pred HHHHHhCCHHHHHHHHHHHHhcC-CchHHHHHhHHHHHHHcCCHHHHHHHHHHhhcccccHH-HHHHHHHHhhhcCCCCC
Q 007721 485 LLLLRLNCQKAAMRCLRLARNHS-SSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE-AFFLKAYILADTNLDPE 562 (591)
Q Consensus 485 ~~l~~l~~~~eA~~~~~~Al~l~-p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l~~~~~-~~~~~~~~~~~~~~~~~ 562 (591)
.++..+|++++|++.++++++.+ |+++.++.++|.++..+|++++|.+.+++.....|... +..+.+-.+.... |
T Consensus 414 ~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~-- 490 (553)
T PRK12370 414 WITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS-E-- 490 (553)
T ss_pred HHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH-H--
Confidence 88999999999999999999875 88999999999999999999999999999988888866 3333333333333 2
Q ss_pred chhHHHHHHHHHhcC
Q 007721 563 SSTYVIQLLEEALRC 577 (591)
Q Consensus 563 ~~~~~~~~~~~~~~~ 577 (591)
.+..+++-|.++-.+
T Consensus 491 ~a~~~l~~ll~~~~~ 505 (553)
T PRK12370 491 RALPTIREFLESEQR 505 (553)
T ss_pred HHHHHHHHHHHHhhH
Confidence 344434434443333
No 33
>PLN02789 farnesyltranstransferase
Probab=99.77 E-value=4.4e-17 Score=168.81 Aligned_cols=222 Identities=14% Similarity=0.055 Sum_probs=176.2
Q ss_pred ccHHHHHHHHHHHhhccccchhhhhHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHhc----C-CcHHHHHHHHHH
Q 007721 270 EEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLY----N-LGREKIVDLNYA 344 (591)
Q Consensus 270 g~~~eA~~~f~~Al~~~~~~a~~~la~~~~~~G~~~~A~~~~~~aI~~~~~~g~a~~~r~~y----~-~~~eA~~dl~~A 344 (591)
++|.+|..+|++++. ..++...|+..++++|..+|....++..|+.. + ..++++..++++
T Consensus 34 ~~~~~a~~~~ra~l~---------------~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~ 98 (320)
T PLN02789 34 PEFREAMDYFRAVYA---------------SDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDV 98 (320)
T ss_pred HHHHHHHHHHHHHHH---------------cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHH
Confidence 467777777765433 34566788888889999998888888777532 1 127899999999
Q ss_pred HHcCCCChHHHHhHHHHHHHhCCH--HHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhh
Q 007721 345 SELDPTLSFPYKYRAVAKMEEGQI--RAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMF 421 (591)
Q Consensus 345 i~LdP~~~~ay~~rg~~l~~l~~~--~eAl~~~~~al~l~p~-~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~ 421 (591)
++.+|++..+|.+|+.++..+|+. +++++.++++|+++|+ ..+|..|++++..+|++++|+..++++|++||++.
T Consensus 99 i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~-- 176 (320)
T PLN02789 99 AEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNN-- 176 (320)
T ss_pred HHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCch--
Confidence 999999999999999999999874 7889999999999995 89999999999999999999999999999999983
Q ss_pred hhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccchHHHHHHHHHcCCCCchhHhhhHHHHHH----hCCHHHHH
Q 007721 422 HGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLR----LNCQKAAM 497 (591)
Q Consensus 422 ~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~~P~~~~~~~~~g~~l~~----l~~~~eA~ 497 (591)
.+.+.++.+.........- .. ...+.+.+..++|.++|.+..+|+.++-++.. +++..+|+
T Consensus 177 ----sAW~~R~~vl~~~~~l~~~----------~~-~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~ 241 (320)
T PLN02789 177 ----SAWNQRYFVITRSPLLGGL----------EA-MRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVS 241 (320)
T ss_pred ----hHHHHHHHHHHhccccccc----------cc-cHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHH
Confidence 3333343332221110000 00 00124778889999999999999999999998 56678899
Q ss_pred HHHHHHHhcCCchHHHHHhHHHHHHH
Q 007721 498 RCLRLARNHSSSEHERLVYEGWILYD 523 (591)
Q Consensus 498 ~~~~~Al~l~p~~~~a~~~~G~~l~~ 523 (591)
+.+.+++..+|+++.|+-.+.-++..
T Consensus 242 ~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 242 SVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 99999999999999999999998875
No 34
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=4e-17 Score=171.37 Aligned_cols=84 Identities=10% Similarity=-0.009 Sum_probs=48.3
Q ss_pred chhHHHHHHHHhhcchhhhHHHHHHHHhhhHHhhhccHHHHHHHHHHHhhcccc--chhhhhHHHHHHhCChHHHHHHHH
Q 007721 235 SNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHI--YSLAGLARAKYKVGQQYSAYKLIN 312 (591)
Q Consensus 235 ~~~~v~lLe~~~~~~~~~~~~~~a~~~lG~~~~~~g~~~eA~~~f~~Al~~~~~--~a~~~la~~~~~~G~~~~A~~~~~ 312 (591)
.++++.++..++.+.+. ..+-|-|+..++...|+|.+|..+=.+.++++|. .+|.-.|..++-+|++++|+..|.
T Consensus 18 ~~~ai~~~t~ai~l~p~---nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~ 94 (539)
T KOG0548|consen 18 FETAIRLFTEAIMLSPT---NHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYS 94 (539)
T ss_pred HHHHHHHHHHHHccCCC---ccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHH
Confidence 44555555555554443 3455556666666666666666666666665443 245555566666666666666666
Q ss_pred HHHHhcCCC
Q 007721 313 SIISEHKPT 321 (591)
Q Consensus 313 ~aI~~~~~~ 321 (591)
+.++..|++
T Consensus 95 ~GL~~d~~n 103 (539)
T KOG0548|consen 95 EGLEKDPSN 103 (539)
T ss_pred HHhhcCCch
Confidence 666555543
No 35
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=1.7e-17 Score=168.92 Aligned_cols=275 Identities=17% Similarity=0.096 Sum_probs=213.5
Q ss_pred HHHHHHhhhHHhhhccHHHHHHHHHHHhhcccc--chhhhhHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHhcCC
Q 007721 256 MLALHQLGCVMFEREEYKDACYYFEAAADAGHI--YSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNL 333 (591)
Q Consensus 256 ~~a~~~lG~~~~~~g~~~eA~~~f~~Al~~~~~--~a~~~la~~~~~~G~~~~A~~~~~~aI~~~~~~g~a~~~r~~y~~ 333 (591)
+.-....|..+...++|.+|+..|..||...|. ..|.+++..+...|+++.|..+..+.+++.+...+.+.+-+....
T Consensus 49 Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~ 128 (486)
T KOG0550|consen 49 AEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHL 128 (486)
T ss_pred HHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhh
Confidence 334567889999999999999999999999554 456677889999999999999999999998887776654443311
Q ss_pred ----cHH------------HHHHHHHHHHcCCCCh------HHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCC-hHHHHH
Q 007721 334 ----GRE------------KIVDLNYASELDPTLS------FPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLEL 390 (591)
Q Consensus 334 ----~~e------------A~~dl~~Ai~LdP~~~------~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~-~~~~~~ 390 (591)
+.+ +...|.+...+-|.+. .+-...+.++..+|++++|+..--.++++++. .++++.
T Consensus 129 a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~v 208 (486)
T KOG0550|consen 129 ALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYV 208 (486)
T ss_pred hhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHh
Confidence 111 1122333333444443 34445778899999999999999999999995 899999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccc-hHHHHHHH
Q 007721 391 RAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIG-SLAVINQM 469 (591)
Q Consensus 391 r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~-al~~~~~a 469 (591)
||.++.-.++.+.|+..|++++.++|+.-. ...+......+.....+ ++..-.-+.+. |-.+|..|
T Consensus 209 rg~~~yy~~~~~ka~~hf~qal~ldpdh~~---sk~~~~~~k~le~~k~~----------gN~~fk~G~y~~A~E~Ytea 275 (486)
T KOG0550|consen 209 RGLCLYYNDNADKAINHFQQALRLDPDHQK---SKSASMMPKKLEVKKER----------GNDAFKNGNYRKAYECYTEA 275 (486)
T ss_pred cccccccccchHHHHHHHhhhhccChhhhh---HHhHhhhHHHHHHHHhh----------hhhHhhccchhHHHHHHHHh
Confidence 999999999999999999999999998732 11112222222222222 22222225555 67799999
Q ss_pred HHcCCCCch----hHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHHHHHHHHhhccccc
Q 007721 470 LINDPGKSF----LRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERT 543 (591)
Q Consensus 470 l~~~P~~~~----~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l~~~ 543 (591)
|.+||.+.. +|.||+.+..++||.+||+.+.+.|+.++|..-.|+..+|.|...++.+++|+++|++|+...-+
T Consensus 276 l~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 276 LNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred hcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 999998754 59999999999999999999999999999999999999999999999999999999999987666
No 36
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.75 E-value=3e-15 Score=165.94 Aligned_cols=306 Identities=17% Similarity=0.155 Sum_probs=230.9
Q ss_pred chhHHHHHHHHhhcchhhhHHHHHHHHhhhHHhhhccHHHHHHHHHHHhhcc---ccchhhhhHHHHHHhCChHHHHHHH
Q 007721 235 SNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAG---HIYSLAGLARAKYKVGQQYSAYKLI 311 (591)
Q Consensus 235 ~~~~v~lLe~~~~~~~~~~~~~~a~~~lG~~~~~~g~~~eA~~~f~~Al~~~---~~~a~~~la~~~~~~G~~~~A~~~~ 311 (591)
...+..+.+++..........+..+|++|..+..+|+|++|..+|.+++..+ +..++.|+|..++..|++..|...|
T Consensus 286 y~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~f 365 (1018)
T KOG2002|consen 286 YERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCF 365 (1018)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHH
Confidence 4455566666554433333345679999999999999999999999999883 3678999999999999999999999
Q ss_pred HHHHHhcCCC-------HHHHHHHHhcC-CcHHHHHHHHHHHHcCCCChHHH----------------------------
Q 007721 312 NSIISEHKPT-------GWMYQERSLYN-LGREKIVDLNYASELDPTLSFPY---------------------------- 355 (591)
Q Consensus 312 ~~aI~~~~~~-------g~a~~~r~~y~-~~~eA~~dl~~Ai~LdP~~~~ay---------------------------- 355 (591)
.++...+|+. |..|...+... ..+.|...+.++++..|.++.+|
T Consensus 366 Ekv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~ 445 (1018)
T KOG2002|consen 366 EKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILES 445 (1018)
T ss_pred HHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 9999999874 44443332100 11566667777777777775444
Q ss_pred ----------HhHHHHHHHhCCHHHHHHHHHHHHhc-C--CChH--------HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007721 356 ----------KYRAVAKMEEGQIRAAISEIDRIIVF-K--LSVD--------CLELRAWLFIAADDYESALRDTLALLAL 414 (591)
Q Consensus 356 ----------~~rg~~l~~l~~~~eAl~~~~~al~l-~--p~~~--------~~~~r~~~~~~~g~~~~A~~d~~~al~l 414 (591)
+|.|..+..+|.+.+|...|.+|+.. . .+.+ .-||++.++..+++++.|...|..+++.
T Consensus 446 ~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke 525 (1018)
T KOG2002|consen 446 KGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE 525 (1018)
T ss_pred cCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 55666677788888899999988887 2 1222 3688999999999999999999999999
Q ss_pred CCcchhhhhhch----------------------------HhHHHHHHHhhhcccCchh-----------------hhhh
Q 007721 415 ESNYMMFHGRVS----------------------------GDHLVKLLNHHVRSWSPAD-----------------CWIK 449 (591)
Q Consensus 415 ~P~~~~~~~~~~----------------------------~~~~~~~l~~~~~~~~~a~-----------------~~~~ 449 (591)
.|.|+..+-|.+ +..+.|.+-...+.|..|. ..+.
T Consensus 526 hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Yslia 605 (1018)
T KOG2002|consen 526 HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIA 605 (1018)
T ss_pred CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHH
Confidence 999998665553 3444443333333333332 1222
Q ss_pred hhh-------cccccc-----cc-chHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHh
Q 007721 450 LYD-------RWSSVD-----DI-GSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVY 516 (591)
Q Consensus 450 l~~-------~~~~~~-----~~-~al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~ 516 (591)
++. .|++.+ -+ .|++.|.++|..+|.|..+=+..|.+|..-|++.+|+..|.+.++--.++.+++.|
T Consensus 606 LGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lN 685 (1018)
T KOG2002|consen 606 LGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLN 685 (1018)
T ss_pred hhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeee
Confidence 332 223222 12 27889999999999999999999999999999999999999999988888999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhcc
Q 007721 517 EGWILYDTGHREEALSRAEKSISI 540 (591)
Q Consensus 517 ~G~~l~~~g~~eeAl~~~e~ai~l 540 (591)
+|.|+..+|+|-.|++.|+..++.
T Consensus 686 lah~~~e~~qy~~AIqmYe~~lkk 709 (1018)
T KOG2002|consen 686 LAHCYVEQGQYRLAIQMYENCLKK 709 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998885
No 37
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.75 E-value=2.9e-16 Score=156.32 Aligned_cols=285 Identities=14% Similarity=0.139 Sum_probs=225.2
Q ss_pred HhhcchhhhHHHHHHHHhhhHHhhhccHHHHHHHHHHHhhcccc--chhhhhHHHHHHhCChHHHHHHHHHHHHhcCCCH
Q 007721 245 LGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHI--YSLAGLARAKYKVGQQYSAYKLINSIISEHKPTG 322 (591)
Q Consensus 245 ~~~~~~~~~~~~~a~~~lG~~~~~~g~~~eA~~~f~~Al~~~~~--~a~~~la~~~~~~G~~~~A~~~~~~aI~~~~~~g 322 (591)
++...++ .+++++.++.+|+..|+-.-|+.++.+.|+++|. .+-..+|.++..+|.++.|..+|+.++.-.|..+
T Consensus 64 Ave~dp~---~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~ 140 (504)
T KOG0624|consen 64 AVEGDPN---NYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNG 140 (504)
T ss_pred HHcCCch---hHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcc
Confidence 4444444 4688999999999999999999999999999654 4667788899999999999999999999888654
Q ss_pred HHHHHHH-----------------hcCCc--HHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCC
Q 007721 323 WMYQERS-----------------LYNLG--REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL 383 (591)
Q Consensus 323 ~a~~~r~-----------------~y~~~--~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p 383 (591)
.....+. -++-| ..++...++.++..|=++..|..|+.+|...|....||.+++.|-++..
T Consensus 141 ~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~ 220 (504)
T KOG0624|consen 141 LVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ 220 (504)
T ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc
Confidence 4332221 12233 7889999999999999999999999999999999999999999999988
Q ss_pred C-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchh-hhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccc
Q 007721 384 S-VDCLELRAWLFIAADDYESALRDTLALLALESNYMM-FHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIG 461 (591)
Q Consensus 384 ~-~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~-~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~ 461 (591)
+ .+.++....++...||.+.++...+..|++||++.- |-.-.........|..+.+-.++-+ |+ .
T Consensus 221 DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~-~t------------~ 287 (504)
T KOG0624|consen 221 DNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKH-WT------------E 287 (504)
T ss_pred cchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhh-HH------------H
Confidence 5 788888999999999999999999999999999854 2221222222333332222211110 00 1
Q ss_pred hHHHHHHHHHcCCCCchhHhh----hHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHHHHHHHHh
Q 007721 462 SLAVINQMLINDPGKSFLRFR----QSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKS 537 (591)
Q Consensus 462 al~~~~~al~~~P~~~~~~~~----~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~~e~a 537 (591)
.++-.+..+..+|.-+...+| .-.+...-+.+.||++-..++|+.+|++++++--|+.++.-.-.||.|+..|++|
T Consensus 288 cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A 367 (504)
T KOG0624|consen 288 CLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKA 367 (504)
T ss_pred HHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 266788899999996665544 2334455788999999999999999999999999999999999999999999999
Q ss_pred hcccccHH
Q 007721 538 ISIERTFE 545 (591)
Q Consensus 538 i~l~~~~~ 545 (591)
.+.++|..
T Consensus 368 ~e~n~sn~ 375 (504)
T KOG0624|consen 368 LELNESNT 375 (504)
T ss_pred HhcCcccH
Confidence 99999875
No 38
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=5.8e-15 Score=152.33 Aligned_cols=253 Identities=17% Similarity=0.118 Sum_probs=203.8
Q ss_pred hhhHHhhhccHHHHHHHHHHHhhccc---cchhhhhHHHHHHhCChHHHHHHHHHHHHhcC-CCHHHHH-HHHhcCCcH-
Q 007721 262 LGCVMFEREEYKDACYYFEAAADAGH---IYSLAGLARAKYKVGQQYSAYKLINSIISEHK-PTGWMYQ-ERSLYNLGR- 335 (591)
Q Consensus 262 lG~~~~~~g~~~eA~~~f~~Al~~~~---~~a~~~la~~~~~~G~~~~A~~~~~~aI~~~~-~~g~a~~-~r~~y~~~~- 335 (591)
++.++.+....+++..-+++.+.++. .+.....|.+.+.+.++++|+..|+.+....| .++.+-. .-..|...+
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence 45566666677888887777777743 44556678889999999999999999988876 3333321 112222222
Q ss_pred HHHHHH-HHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007721 336 EKIVDL-NYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLA 413 (591)
Q Consensus 336 eA~~dl-~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~-~~~~~~r~~~~~~~g~~~~A~~d~~~al~ 413 (591)
.++..+ ..+..+|---++.-.-.|+-|...++++.|+..|+||+++||+ ..+|.+.|-=|.++++-..|+..|++|++
T Consensus 313 skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd 392 (559)
T KOG1155|consen 313 SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD 392 (559)
T ss_pred HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh
Confidence 233333 3467777777788888899999999999999999999999997 67788888889999999999999999999
Q ss_pred cCCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccc-hHHHHHHHHHcCCCCchhHhhhHHHHHHhCC
Q 007721 414 LESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIG-SLAVINQMLINDPGKSFLRFRQSLLLLRLNC 492 (591)
Q Consensus 414 l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~-al~~~~~al~~~P~~~~~~~~~g~~l~~l~~ 492 (591)
++|.+ ..+|..+++...-++=.- ||=.|++|+++-|+++..|.-+|.++.++|+
T Consensus 393 i~p~D-------------------------yRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~ 447 (559)
T KOG1155|consen 393 INPRD-------------------------YRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNR 447 (559)
T ss_pred cCchh-------------------------HHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhcc
Confidence 99976 345555555544444444 6779999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHHHHHHHHhhc
Q 007721 493 QKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSIS 539 (591)
Q Consensus 493 ~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~ 539 (591)
.+||+.+|.+|+...-.++.+++.+|.++-.+++.+||.+.|++=+.
T Consensus 448 ~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 448 LEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988
No 39
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=6.9e-16 Score=162.62 Aligned_cols=270 Identities=13% Similarity=0.060 Sum_probs=219.1
Q ss_pred hhHHhhhccHHHHHHHHHHHhhccccc---hhhhhHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHhc----CCcH
Q 007721 263 GCVMFEREEYKDACYYFEAAADAGHIY---SLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLY----NLGR 335 (591)
Q Consensus 263 G~~~~~~g~~~eA~~~f~~Al~~~~~~---a~~~la~~~~~~G~~~~A~~~~~~aI~~~~~~g~a~~~r~~y----~~~~ 335 (591)
+...+.+.++.+..+.++..++..|-. ....+| .+..+|+...=+..-.+.+..+|+.+..|+.-|.| +...
T Consensus 251 ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia-~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~s 329 (611)
T KOG1173|consen 251 ADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIA-CLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYS 329 (611)
T ss_pred HHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHH-HHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcH
Confidence 334566678888888888888885432 223344 67888888777788888999999877766666653 2339
Q ss_pred HHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007721 336 EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLAL 414 (591)
Q Consensus 336 eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~-~~~~~~r~~~~~~~g~~~~A~~d~~~al~l 414 (591)
+|...|.||..+||++..+|...|.++.-+|.+++|++.|.+|-++=|. ..-....|.=|..++.++-|...|.+|+.+
T Consensus 330 eARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai 409 (611)
T KOG1173|consen 330 EARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAI 409 (611)
T ss_pred HHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999885 211344788889999999999999999999
Q ss_pred CCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccchHHHHHHHH----HcCCCC---chhHhhhHHHH
Q 007721 415 ESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQML----INDPGK---SFLRFRQSLLL 487 (591)
Q Consensus 415 ~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al----~~~P~~---~~~~~~~g~~l 487 (591)
.|.++ -..+..+.+.-.-+.|.+| +..|..+| +..+.. ...+.|+|.++
T Consensus 410 ~P~Dp------lv~~Elgvvay~~~~y~~A------------------~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~ 465 (611)
T KOG1173|consen 410 APSDP------LVLHELGVVAYTYEEYPEA------------------LKYFQKALEVIKSVLNEKIFWEPTLNNLGHAY 465 (611)
T ss_pred CCCcc------hhhhhhhheeehHhhhHHH------------------HHHHHHHHHHhhhccccccchhHHHHhHHHHH
Confidence 99983 4555566555555666666 44455555 333333 24589999999
Q ss_pred HHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHHHHHHHHhhcccccHH-HHHHHHHHhhhc
Q 007721 488 LRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE-AFFLKAYILADT 557 (591)
Q Consensus 488 ~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l~~~~~-~~~~~~~~~~~~ 557 (591)
.++|+++||+..||+||.+.|.+++.|-..|.++..+|+++.|+..|.+|+.|+|+.+ +==+.+.+++|+
T Consensus 466 Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~~ 536 (611)
T KOG1173|consen 466 RKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIEDS 536 (611)
T ss_pred HHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999996 666666888884
No 40
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.73 E-value=4.4e-16 Score=151.76 Aligned_cols=186 Identities=15% Similarity=0.061 Sum_probs=144.1
Q ss_pred HHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007721 335 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLA 413 (591)
Q Consensus 335 ~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~-~~~~~~r~~~~~~~g~~~~A~~d~~~al~ 413 (591)
++|+..++++++.+|++..++..+|.++..+|++++|+..+++++++.|+ ...+.+.|.++...|++++|+..|+++++
T Consensus 48 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 127 (234)
T TIGR02521 48 EVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIE 127 (234)
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 77777888888888888889999999999999999999999999998885 66677788888999999999999999987
Q ss_pred cCCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccchHHHHHHHHHcCCCCchhHhhhHHHHHHhCCH
Q 007721 414 LESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQ 493 (591)
Q Consensus 414 l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~ 493 (591)
..+.. .........+.+.....++++ |...+++++..+|.++.++..+|.++..+|++
T Consensus 128 ~~~~~----~~~~~~~~l~~~~~~~g~~~~------------------A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 128 DPLYP----QPARSLENAGLCALKAGDFDK------------------AEKYLTRALQIDPQRPESLLELAELYYLRGQY 185 (234)
T ss_pred ccccc----cchHHHHHHHHHHHHcCCHHH------------------HHHHHHHHHHhCcCChHHHHHHHHHHHHcCCH
Confidence 54311 111122222222222333333 36778888888888888888889999999999
Q ss_pred HHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHHHHHHHHhhcccc
Q 007721 494 KAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIER 542 (591)
Q Consensus 494 ~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l~~ 542 (591)
++|+..+++++++.|++++.++..+.++...|+.++|....++...+.|
T Consensus 186 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 186 KDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 9999999999888888888888888888888999998887777665543
No 41
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.73 E-value=2.2e-17 Score=168.98 Aligned_cols=255 Identities=16% Similarity=0.127 Sum_probs=105.5
Q ss_pred HhhhHHhhhccHHHHHHHHHHHhhc--cc--cchhhhhHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHhc---CC
Q 007721 261 QLGCVMFEREEYKDACYYFEAAADA--GH--IYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLY---NL 333 (591)
Q Consensus 261 ~lG~~~~~~g~~~eA~~~f~~Al~~--~~--~~a~~~la~~~~~~G~~~~A~~~~~~aI~~~~~~g~a~~~r~~y---~~ 333 (591)
.++.++...|++++|.+.+.+++.. ++ ...+..+|.+...+|+++.|...|.+++...+.....+.+...+ +.
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l~~~~~ 92 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQLLQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 5588888999999999999654433 22 34566677788889999999999999998887655555444333 23
Q ss_pred cHHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcC--C-ChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007721 334 GREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFK--L-SVDCLELRAWLFIAADDYESALRDTLA 410 (591)
Q Consensus 334 ~~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~--p-~~~~~~~r~~~~~~~g~~~~A~~d~~~ 410 (591)
.++|+..+.++.+-++ ++..+.....++...++++++...++++.+.. | ++..+..+|.++.+.|+.++|+++|++
T Consensus 93 ~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 93 PEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3778888888877654 56777788888999999999999999988765 3 366678899999999999999999999
Q ss_pred HHhcCCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccchHHHHHHHHHcCCCCchhHhhhHHHHHHh
Q 007721 411 LLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRL 490 (591)
Q Consensus 411 al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~~P~~~~~~~~~g~~l~~l 490 (591)
|++++|++.. +.....-+.-..++.++ +...+.+.....|.++.+|...|.++..+
T Consensus 172 al~~~P~~~~------~~~~l~~~li~~~~~~~------------------~~~~l~~~~~~~~~~~~~~~~la~~~~~l 227 (280)
T PF13429_consen 172 ALELDPDDPD------ARNALAWLLIDMGDYDE------------------AREALKRLLKAAPDDPDLWDALAAAYLQL 227 (280)
T ss_dssp HHHH-TT-HH------HHHHHHHHHCTTCHHHH------------------HHHHHHHHHHH-HTSCCHCHHHHHHHHHH
T ss_pred HHHcCCCCHH------HHHHHHHHHHHCCChHH------------------HHHHHHHHHHHCcCHHHHHHHHHHHhccc
Confidence 9999999842 11111111111111121 24566666777799999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHHHHHHHHhhcc
Q 007721 491 NCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISI 540 (591)
Q Consensus 491 ~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l 540 (591)
|++++|+..++++++.+|+|+..+...|.+|...|+.++|++.+++++..
T Consensus 228 g~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 228 GRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp T-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999999999999999999999864
No 42
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.71 E-value=2.3e-17 Score=144.40 Aligned_cols=101 Identities=30% Similarity=0.372 Sum_probs=91.4
Q ss_pred CCCCCceEEEEc-CeEEEhhHHHHhhcCHHHHHhhcCC-CCCCCCceeEecCCCCCHHHHHHHHHHHhcCCCCCCC-hhH
Q 007721 51 LEEDDSVTFCVR-DKEISFVRNKIASLSSPFKAMLYGG-FVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFC-PGI 127 (591)
Q Consensus 51 ~~~~~~V~f~v~-g~~~~aHr~iLaa~S~yF~amf~~~-~~Es~~~~I~l~~~~vs~~~~~~ll~ylYtg~~~~~~-~~~ 127 (591)
++..++|+|.|+ |+.|+|||.+|+++|+||+.||+++ +.++...+|.+ +++++++|+.+++|+|+|.+. ++ .++
T Consensus 7 ~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~--~~~~~~~~~~~l~~~Y~~~~~-~~~~~~ 83 (111)
T PF00651_consen 7 SNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISL--PDVSPEAFEAFLEYMYTGEIE-INSDEN 83 (111)
T ss_dssp HTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEE--TTSCHHHHHHHHHHHHHSEEE-EE-TTT
T ss_pred CCCCCCEEEEECCCEEEeechhhhhccchhhhhccccccccccccccccc--ccccccccccccccccCCccc-CCHHHH
Confidence 356677999999 8999999999999999999999999 77777778999 999999999999999999998 87 999
Q ss_pred HHHHHHHHhhhChHHHHHHHHHHHHhh
Q 007721 128 VLELLSFANRFCCEEMKSACDAHLASL 154 (591)
Q Consensus 128 v~~lL~~A~~~~i~~L~~~C~~~L~~~ 154 (591)
+.+++.+|++|+++.|+..|+.+|.+.
T Consensus 84 ~~~ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 84 VEELLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp HHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence 999999999999999999999999864
No 43
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.70 E-value=1.6e-15 Score=147.75 Aligned_cols=198 Identities=14% Similarity=0.037 Sum_probs=161.4
Q ss_pred ChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhhchHhH
Q 007721 351 LSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDH 429 (591)
Q Consensus 351 ~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~-~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~~~~~ 429 (591)
.+..+.++|.++...|++++|+..++++++.+|+ ...+..+|.++..+|++++|+..|+++++++|++.. +..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~------~~~ 103 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGD------VLN 103 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH------HHH
Confidence 3688999999999999999999999999999996 777888999999999999999999999999998732 333
Q ss_pred HHHHHHhhhcccCchhhhhhhhhccccccccchHHHHHHHHHcC--CCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcC
Q 007721 430 LVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLIND--PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHS 507 (591)
Q Consensus 430 ~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~~--P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~ 507 (591)
..+.+.....++++| +..+++++... |.....+.++|.++..+|++++|...++++++.+
T Consensus 104 ~~~~~~~~~g~~~~A------------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 165 (234)
T TIGR02521 104 NYGTFLCQQGKYEQA------------------MQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID 165 (234)
T ss_pred HHHHHHHHcccHHHH------------------HHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 333333344444444 77888888754 6677899999999999999999999999999999
Q ss_pred CchHHHHHhHHHHHHHcCCHHHHHHHHHHhhcccccHHHHHHHHHHhhhcCCCCCchhHHHHHHH
Q 007721 508 SSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLE 572 (591)
Q Consensus 508 p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (591)
|++++++..+|.+++..|++++|+..+++++.+.|+..........+....=|++......+.++
T Consensus 166 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 166 PQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999987766333333344444555555555444443
No 44
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.70 E-value=2.7e-16 Score=144.80 Aligned_cols=125 Identities=13% Similarity=0.038 Sum_probs=94.6
Q ss_pred HHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Q 007721 339 VDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESN 417 (591)
Q Consensus 339 ~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~-~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~ 417 (591)
..|++|++++|++ +.++|.++..+|++++|+..|++++.++|+ +..+.++|.++..+|++++|+..|+++++++|+
T Consensus 14 ~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~ 90 (144)
T PRK15359 14 DILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS 90 (144)
T ss_pred HHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 3567788888774 556788888888888888888888888884 677777777777788887777777766666665
Q ss_pred chhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccchHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHH
Q 007721 418 YMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAM 497 (591)
Q Consensus 418 ~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~ 497 (591)
+ +.+++++|.++..+|++++|+
T Consensus 91 ~----------------------------------------------------------~~a~~~lg~~l~~~g~~~eAi 112 (144)
T PRK15359 91 H----------------------------------------------------------PEPVYQTGVCLKMMGEPGLAR 112 (144)
T ss_pred C----------------------------------------------------------cHHHHHHHHHHHHcCCHHHHH
Confidence 4 466777888888888888888
Q ss_pred HHHHHHHhcCCchHHHHHhHHHHHHHc
Q 007721 498 RCLRLARNHSSSEHERLVYEGWILYDT 524 (591)
Q Consensus 498 ~~~~~Al~l~p~~~~a~~~~G~~l~~~ 524 (591)
..|++|++++|++++.+.++|+++..+
T Consensus 113 ~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 113 EAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 888888888888888888888776654
No 45
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.69 E-value=6.3e-16 Score=163.63 Aligned_cols=234 Identities=16% Similarity=0.135 Sum_probs=177.7
Q ss_pred HHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007721 335 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLA 413 (591)
Q Consensus 335 ~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~-~~~~~~r~~~~~~~g~~~~A~~d~~~al~ 413 (591)
.+|.-.|+.|+.-||.+++||..+|.+..+.++-..||..++|+++++|+ .+++..+|..|.-.|--.+|+..+.+=|+
T Consensus 302 ~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~ 381 (579)
T KOG1125|consen 302 SEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIR 381 (579)
T ss_pred hHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 77778888888888888888888888888888888888888888888885 67777788888888888888888888888
Q ss_pred cCCcchhhhh-----h-------ch---HhHHHHHHHhhh-ccc--Cchhhhhhhhhccccccccc-hHHHHHHHHHcCC
Q 007721 414 LESNYMMFHG-----R-------VS---GDHLVKLLNHHV-RSW--SPADCWIKLYDRWSSVDDIG-SLAVINQMLINDP 474 (591)
Q Consensus 414 l~P~~~~~~~-----~-------~~---~~~~~~~l~~~~-~~~--~~a~~~~~l~~~~~~~~~~~-al~~~~~al~~~P 474 (591)
-.|.|..... . .. ..........+. +.- ..+|...-|+.-..-.++|+ |+.+|+.||...|
T Consensus 382 ~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~P 461 (579)
T KOG1125|consen 382 NKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKP 461 (579)
T ss_pred hCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCC
Confidence 8877653111 0 00 112222222222 222 23333333333333345555 7999999999999
Q ss_pred CCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHHHHHHHHhhcccccHHHHHHHHHHh
Q 007721 475 GKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYIL 554 (591)
Q Consensus 475 ~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l~~~~~~~~~~~~~~ 554 (591)
++..+|+++|-+|..-++.+||+..|++|++|.|.+..+.||+|.....+|.|+||+..|=.||.|+|..- .-
T Consensus 462 nd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~-------~~ 534 (579)
T KOG1125|consen 462 NDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSR-------NH 534 (579)
T ss_pred chHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhccc-------cc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998622 11
Q ss_pred hhcCCCCCchhHHHHHHHHHhcCC
Q 007721 555 ADTNLDPESSTYVIQLLEEALRCP 578 (591)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~ 578 (591)
.|. |..|..+++-|.-||.|-
T Consensus 535 ~~~---~~~se~iw~tLR~als~~ 555 (579)
T KOG1125|consen 535 NKA---PMASENIWQTLRLALSAM 555 (579)
T ss_pred ccC---CcchHHHHHHHHHHHHHc
Confidence 221 333788888888888763
No 46
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.68 E-value=4.5e-16 Score=143.33 Aligned_cols=125 Identities=12% Similarity=-0.013 Sum_probs=109.0
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhh
Q 007721 372 ISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLY 451 (591)
Q Consensus 372 l~~~~~al~l~p~~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~ 451 (591)
.+.|+++|+++|+. ++.+|.++..+|++++|+..|++++.++|++
T Consensus 13 ~~~~~~al~~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~--------------------------------- 57 (144)
T PRK15359 13 EDILKQLLSVDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWS--------------------------------- 57 (144)
T ss_pred HHHHHHHHHcCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc---------------------------------
Confidence 35688888888864 5567888888888888887777766666654
Q ss_pred hccccccccchHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHHH
Q 007721 452 DRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEAL 531 (591)
Q Consensus 452 ~~~~~~~~~~al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl 531 (591)
+.+|+++|.++.++|++++|+..|++|++++|+++++++++|.++..+|++++|+
T Consensus 58 -------------------------~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi 112 (144)
T PRK15359 58 -------------------------WRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAR 112 (144)
T ss_pred -------------------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHH
Confidence 5788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccccHH-HHHHHHHHhhh
Q 007721 532 SRAEKSISIERTFE-AFFLKAYILAD 556 (591)
Q Consensus 532 ~~~e~ai~l~~~~~-~~~~~~~~~~~ 556 (591)
..|++|++++|++. ++.+||-++..
T Consensus 113 ~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 113 EAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 99999999999987 88899887754
No 47
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.68 E-value=3.2e-14 Score=157.87 Aligned_cols=328 Identities=14% Similarity=0.074 Sum_probs=241.2
Q ss_pred hhHHHHHHHHhhcchhhhHHHHHHHHhhhHHhhhccHHHHHHHHHHHhhccc---cchhhhhHHHHHHhCChHHHHHHHH
Q 007721 236 NTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGH---IYSLAGLARAKYKVGQQYSAYKLIN 312 (591)
Q Consensus 236 ~~~v~lLe~~~~~~~~~~~~~~a~~~lG~~~~~~g~~~eA~~~f~~Al~~~~---~~a~~~la~~~~~~G~~~~A~~~~~ 312 (591)
+.+...|...++-.+. ...++...+++.+..|+|..|+.+|.+|+.++| ++.-.|+|.....+|..+.|...+.
T Consensus 147 ~~A~a~F~~Vl~~sp~---Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ 223 (1018)
T KOG2002|consen 147 DDADAQFHFVLKQSPD---NILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFE 223 (1018)
T ss_pred HHHHHHHHHHHhhCCc---chHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHH
Confidence 3444455554432232 346777778888999999999999999999854 4566788888899999999999999
Q ss_pred HHHHhcCCCHHHHHHHHhcC-------CcHHHHHHHHHHHHcCCCCh---------------------------------
Q 007721 313 SIISEHKPTGWMYQERSLYN-------LGREKIVDLNYASELDPTLS--------------------------------- 352 (591)
Q Consensus 313 ~aI~~~~~~g~a~~~r~~y~-------~~~eA~~dl~~Ai~LdP~~~--------------------------------- 352 (591)
++++++|....++...+.+. -...|...+.+|...+|.++
T Consensus 224 ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~ 303 (1018)
T KOG2002|consen 224 RALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENK 303 (1018)
T ss_pred HHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhh
Confidence 99999998888877776431 11678888999999999885
Q ss_pred ----HHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhhch
Q 007721 353 ----FPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSV--DCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVS 426 (591)
Q Consensus 353 ----~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~~--~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~~ 426 (591)
+.++.+|-+++.+|++++|...|-.+++.+|+. -.++..|..++..|++++|+..|+++++..|++..
T Consensus 304 ~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~e------ 377 (1018)
T KOG2002|consen 304 SIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYE------ 377 (1018)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHH------
Confidence 445666666666666666666666666666653 22344566666677777777777777777666542
Q ss_pred HhHHHHHHHhhh-------------------cccCchhhhhhhhhccccccccchHHHHHHHHH-----cCCCCchhHhh
Q 007721 427 GDHLVKLLNHHV-------------------RSWSPADCWIKLYDRWSSVDDIGSLAVINQMLI-----NDPGKSFLRFR 482 (591)
Q Consensus 427 ~~~~~~~l~~~~-------------------~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~-----~~P~~~~~~~~ 482 (591)
+...+|.+.... .....+++|+.+..-|-.-|-..+|..|..|+. -.|--++..+|
T Consensus 378 tm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNN 457 (1018)
T KOG2002|consen 378 TMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNN 457 (1018)
T ss_pred HHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHh
Confidence 222222222222 235667788888888877777778889998883 23566788999
Q ss_pred hHHHHHHhCCHHHHHHHHHHHHhc-----CCchH-----HHHHhHHHHHHHcCCHHHHHHHHHHhhcccccHH-HHHHHH
Q 007721 483 QSLLLLRLNCQKAAMRCLRLARNH-----SSSEH-----ERLVYEGWILYDTGHREEALSRAEKSISIERTFE-AFFLKA 551 (591)
Q Consensus 483 ~g~~l~~l~~~~eA~~~~~~Al~l-----~p~~~-----~a~~~~G~~l~~~g~~eeAl~~~e~ai~l~~~~~-~~~~~~ 551 (591)
.|.....+|.++.|...+..|+.. +++.+ -..||++.++-.++++++|-..|...++..|+|. +|.-+|
T Consensus 458 vaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~ 537 (1018)
T KOG2002|consen 458 VASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLG 537 (1018)
T ss_pred HHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhh
Confidence 999999999999999999999987 33332 2479999999999999999999999999999999 777776
Q ss_pred HHhhhcCCCCCchhHHHHHHH
Q 007721 552 YILADTNLDPESSTYVIQLLE 572 (591)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~ 572 (591)
--.-|.+-+++.|.-+-+.|+
T Consensus 538 ~ma~~k~~~~ea~~~lk~~l~ 558 (1018)
T KOG2002|consen 538 CMARDKNNLYEASLLLKDALN 558 (1018)
T ss_pred HHHHhccCcHHHHHHHHHHHh
Confidence 444488888888776555443
No 48
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.68 E-value=7.7e-14 Score=150.68 Aligned_cols=285 Identities=11% Similarity=0.019 Sum_probs=212.3
Q ss_pred HHHHHHHhhhHHhhhccHHHHHHHHHHHhhcccc--chhhhhHHHHHHhCChHHHHHHHHHHHHhcCCCHH-HHHHHHh-
Q 007721 255 RMLALHQLGCVMFEREEYKDACYYFEAAADAGHI--YSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGW-MYQERSL- 330 (591)
Q Consensus 255 ~~~a~~~lG~~~~~~g~~~eA~~~f~~Al~~~~~--~a~~~la~~~~~~G~~~~A~~~~~~aI~~~~~~g~-a~~~r~~- 330 (591)
+.......|......|+++.|.+...++.+..+. ..+...|++...+|+++.|...+.++.+..|+.+. +...+..
T Consensus 83 k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l 162 (409)
T TIGR00540 83 KAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRI 162 (409)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHH
Confidence 3445567899999999999999999998887443 34455688899999999999999999888776542 2221111
Q ss_pred ---cCCcHHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCC-ChHHH-HHHHHH---HHHcCCHH
Q 007721 331 ---YNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCL-ELRAWL---FIAADDYE 402 (591)
Q Consensus 331 ---y~~~~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p-~~~~~-~~r~~~---~~~~g~~~ 402 (591)
-+..+.|...++++.+.+|+++.++...+.++.+.|++++|+..+.+.++..+ ++..+ ..+..+ +...++.+
T Consensus 163 ~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~ 242 (409)
T TIGR00540 163 LLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMAD 242 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 12338999999999999999999999999999999999999999999998855 33322 222222 24555666
Q ss_pred HHHHHHHHHHhcCCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccchHHHHHHHHHcCCCCchhH--
Q 007721 403 SALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLR-- 480 (591)
Q Consensus 403 ~A~~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~~P~~~~~~-- 480 (591)
++...+.++.+..|+.. -.+..+......+....++.++ |+..+++++...|.+....
T Consensus 243 ~~~~~L~~~~~~~p~~~--~~~~~l~~~~a~~l~~~g~~~~------------------A~~~l~~~l~~~pd~~~~~~~ 302 (409)
T TIGR00540 243 EGIDGLLNWWKNQPRHR--RHNIALKIALAEHLIDCDDHDS------------------AQEIIFDGLKKLGDDRAISLP 302 (409)
T ss_pred cCHHHHHHHHHHCCHHH--hCCHHHHHHHHHHHHHCCChHH------------------HHHHHHHHHhhCCCcccchhH
Confidence 67778888888888420 0112233333333333334444 4889999999999998642
Q ss_pred hhhHHHHHHhCCHHHHHHHHHHHHhcCCchH--HHHHhHHHHHHHcCCHHHHHHHHH--HhhcccccHHHHHHHHHHhhh
Q 007721 481 FRQSLLLLRLNCQKAAMRCLRLARNHSSSEH--ERLVYEGWILYDTGHREEALSRAE--KSISIERTFEAFFLKAYILAD 556 (591)
Q Consensus 481 ~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~--~a~~~~G~~l~~~g~~eeAl~~~e--~ai~l~~~~~~~~~~~~~~~~ 556 (591)
.-+.......++.++++..++++++..|+++ ..+..+||+++.+|++++|.+.+| ++++++|+.+.+...|-++..
T Consensus 303 ~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~ 382 (409)
T TIGR00540 303 LCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQ 382 (409)
T ss_pred HHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHH
Confidence 2334444446888999999999999999999 899999999999999999999999 688899999987777777766
Q ss_pred cCC
Q 007721 557 TNL 559 (591)
Q Consensus 557 ~~~ 559 (591)
..-
T Consensus 383 ~g~ 385 (409)
T TIGR00540 383 AGD 385 (409)
T ss_pred cCC
Confidence 543
No 49
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.67 E-value=1.3e-15 Score=150.93 Aligned_cols=239 Identities=13% Similarity=0.050 Sum_probs=208.1
Q ss_pred HHhhhHHhhhccHHHHHHHHHHHhhc-cccchhhhhHHHHHHhCChHHHHHHHHHHHHhcCCCH-------HHHHHHHhc
Q 007721 260 HQLGCVMFEREEYKDACYYFEAAADA-GHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTG-------WMYQERSLY 331 (591)
Q Consensus 260 ~~lG~~~~~~g~~~eA~~~f~~Al~~-~~~~a~~~la~~~~~~G~~~~A~~~~~~aI~~~~~~g-------~a~~~r~~y 331 (591)
.++|.+++..|-+.+|...++.+++. ++.+.+..++++|....++..|+..+...+...|..- .++...+.+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~ 306 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQ 306 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhH
Confidence 46899999999999999999999988 6788889999999999999999999999999988643 344444445
Q ss_pred CCcHHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007721 332 NLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLA 410 (591)
Q Consensus 332 ~~~~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p-~~~~~~~r~~~~~~~g~~~~A~~d~~~ 410 (591)
++|.+.|..+++++|.+.++.--.|.-|.--++.+-|+-.|+|+|++-. +++.+.|.|.++..-++++-++..|++
T Consensus 307 ---~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 307 ---EDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred ---HHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 8999999999999999999999999999999999999999999999987 588889999999999999999999999
Q ss_pred HHhcCCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccc-hHHHHHHHHHcCCCCchhHhhhHHHHHH
Q 007721 411 LLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIG-SLAVINQMLINDPGKSFLRFRQSLLLLR 489 (591)
Q Consensus 411 al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~-al~~~~~al~~~P~~~~~~~~~g~~l~~ 489 (591)
|+...-+. -..||.|.+++...-..+|+- |-.+|+-||..||+++++++|+|.+-.+
T Consensus 384 Alstat~~----------------------~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r 441 (478)
T KOG1129|consen 384 ALSTATQP----------------------GQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAAR 441 (478)
T ss_pred HHhhccCc----------------------chhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhh
Confidence 99876532 235888888888888888777 5558888888899999999999888888
Q ss_pred hCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHH
Q 007721 490 LNCQKAAMRCLRLARNHSSSEHERLVYEGWILYD 523 (591)
Q Consensus 490 l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~ 523 (591)
.|+.++|...++.|-.+.|+-.|..+|+|.+-..
T Consensus 442 ~G~i~~Arsll~~A~s~~P~m~E~~~Nl~~~s~~ 475 (478)
T KOG1129|consen 442 SGDILGARSLLNAAKSVMPDMAEVTTNLQFMSVH 475 (478)
T ss_pred cCchHHHHHHHHHhhhhCccccccccceeEEeee
Confidence 8999889888888888888888888888765433
No 50
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.66 E-value=3.4e-16 Score=144.25 Aligned_cols=144 Identities=21% Similarity=0.307 Sum_probs=122.7
Q ss_pred CCCCCCceEEEEc---CeEEEhhHHHHhhcCHHHHHhhcCCCCCCCCceeEecCCCCCHHHHHHHHHHHhcCCCCC-CCh
Q 007721 50 SLEEDDSVTFCVR---DKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDL-FCP 125 (591)
Q Consensus 50 ~~~~~~~V~f~v~---g~~~~aHr~iLaa~S~yF~amf~~~~~Es~~~~I~l~~~~vs~~~~~~ll~ylYtg~~~~-~~~ 125 (591)
....+|+|+|.++ ++.|||||.|||+||++++ |.++-.|.. ++.++ .++++++|..+++|+||++++. ...
T Consensus 62 Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk--faN~~deks-e~~~~--dDad~Ea~~t~iRWIYTDEidfk~dD 136 (280)
T KOG4591|consen 62 EKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK--FANGGDEKS-EELDL--DDADFEAFHTAIRWIYTDEIDFKEDD 136 (280)
T ss_pred hcccccceeEEecCCccccCchhhhhhhhhcchhh--hccCCCcch-hhhcc--cccCHHHHHHhheeeeccccccccch
Confidence 3456778999998 5799999999999999985 344444433 45667 8999999999999999999983 344
Q ss_pred hHHHHHHHHHhhhChHHHHHHHHHHHHhhcCCHHhHHHHHHHHHHhChHHHHHHHHHHHHhhhHhhhCCcccccc
Q 007721 126 GIVLELLSFANRFCCEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVMKI 200 (591)
Q Consensus 126 ~~v~~lL~~A~~~~i~~L~~~C~~~L~~~i~~~~n~~~ll~~A~~~~~~~L~~~c~~~i~~n~~~v~~~~~f~~l 200 (591)
..+.+++.+|++|+++.|+..|++-+...++ ++||+.++++|++.++..|...|-..|..+.+++ ....|.++
T Consensus 137 ~~L~el~e~An~FqLe~Lke~C~k~l~a~l~-V~NCIk~Ye~AEe~n~~qL~n~~~eiIA~~W~dL-~~a~FaqM 209 (280)
T KOG4591|consen 137 EFLLELCELANRFQLELLKERCEKGLGALLH-VDNCIKFYEFAEELNARQLMNVAAEIIAGAWDDL-GKADFAQM 209 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh-HhhHHHHHHHHHHhhHHHHHHHHHHHHHhhcccc-ChHHHHhc
Confidence 5688999999999999999999999999999 9999999999999999999999999999998874 44556554
No 51
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=1.3e-13 Score=140.58 Aligned_cols=295 Identities=11% Similarity=0.028 Sum_probs=228.4
Q ss_pred hHHHHHHHHhhcchhhhHHHHHHHHhhhHHhhhccHHHHHHHHHHHhhccc--cchhhhhHHHHHHhCChHHHHHHHHHH
Q 007721 237 TTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGH--IYSLAGLARAKYKVGQQYSAYKLINSI 314 (591)
Q Consensus 237 ~~v~lLe~~~~~~~~~~~~~~a~~~lG~~~~~~g~~~eA~~~f~~Al~~~~--~~a~~~la~~~~~~G~~~~A~~~~~~a 314 (591)
.+...++...+++.+ .-.+-.+|.+++..|++++|+.-|+++..+++ ..+.-..|.++...|++..--......
T Consensus 217 ~t~l~le~~~~lr~N----vhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~L 292 (564)
T KOG1174|consen 217 QTFLMLHDNTTLRCN----EHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYL 292 (564)
T ss_pred hHHHHHHhhccCCcc----HHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHH
Confidence 344444444334332 23345688999999999999999999988865 224444566677788876655555544
Q ss_pred HHh--cCCCHH-----HHHHHHhcCCcHHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCC-ChH
Q 007721 315 ISE--HKPTGW-----MYQERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVD 386 (591)
Q Consensus 315 I~~--~~~~g~-----a~~~r~~y~~~~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p-~~~ 386 (591)
... +....| ....+..+ .-|+..-+|+|..||++.++|.-.|.++..+||+++|+-.|+.|+.+.| ..+
T Consensus 293 f~~~~~ta~~wfV~~~~l~~~K~~---~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~ 369 (564)
T KOG1174|consen 293 FAKVKYTASHWFVHAQLLYDEKKF---ERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLE 369 (564)
T ss_pred HhhhhcchhhhhhhhhhhhhhhhH---HHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHH
Confidence 433 333222 33334344 7788888999999999999999999999999999999999999999999 488
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccchHHHH
Q 007721 387 CLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVI 466 (591)
Q Consensus 387 ~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~ 466 (591)
+|..+.-+|.+.|++.||..--+-+...-|+++ .+..+.| ..+..++.. .+-.|=..+
T Consensus 370 ~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA------~~LtL~g---~~V~~~dp~-------------~rEKAKkf~ 427 (564)
T KOG1174|consen 370 IYRGLFHSYLAQKRFKEANALANWTIRLFQNSA------RSLTLFG---TLVLFPDPR-------------MREKAKKFA 427 (564)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHhhcch------hhhhhhc---ceeeccCch-------------hHHHHHHHH
Confidence 888788899999999999999999999999872 3333332 111111111 222245589
Q ss_pred HHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHHHHHHHHhhcccccHHH
Q 007721 467 NQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEA 546 (591)
Q Consensus 467 ~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l~~~~~~ 546 (591)
+++|.+.|+...+-..+++++.+-|+.+.++..+++++...||.. .|+.+|.++-.+..+++|+..|..|++++|+.++
T Consensus 428 ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~-LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~ 506 (564)
T KOG1174|consen 428 EKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVN-LHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKR 506 (564)
T ss_pred HhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccH-HHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchH
Confidence 999999999999999999999999999999999999999999855 8999999999999999999999999999999995
Q ss_pred HHHHHHHhhhcCCCCC
Q 007721 547 FFLKAYILADTNLDPE 562 (591)
Q Consensus 547 ~~~~~~~~~~~~~~~~ 562 (591)
-+||+-+...+.||.
T Consensus 507 -sl~Gl~~lEK~~~~~ 521 (564)
T KOG1174|consen 507 -TLRGLRLLEKSDDES 521 (564)
T ss_pred -HHHHHHHHHhccCCC
Confidence 367877766666554
No 52
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.65 E-value=7.2e-16 Score=128.38 Aligned_cols=89 Identities=33% Similarity=0.432 Sum_probs=85.1
Q ss_pred eEEEEcCeEEEhhHHHHhhcCHHHHHhhcCCCCCCCCceeEecCCCCCHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHh
Q 007721 57 VTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIVLELLSFAN 136 (591)
Q Consensus 57 V~f~v~g~~~~aHr~iLaa~S~yF~amf~~~~~Es~~~~I~l~~~~vs~~~~~~ll~ylYtg~~~~~~~~~v~~lL~~A~ 136 (591)
|+|.|+|+.|++||.+|+++|+||+.||.+++.++....|.+ +++++++|+.+++|+||+++. ++.+++.+++.+|+
T Consensus 2 v~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l--~~~~~~~f~~~l~~ly~~~~~-~~~~~~~~l~~~a~ 78 (90)
T smart00225 2 VTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYL--DDVSPEDFRALLEFLYTGKLD-LPEENVEELLELAD 78 (90)
T ss_pred eEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEe--cCCCHHHHHHHHHeecCceee-cCHHHHHHHHHHHH
Confidence 789999999999999999999999999999999888889999 899999999999999999999 88889999999999
Q ss_pred hhChHHHHHHHH
Q 007721 137 RFCCEEMKSACD 148 (591)
Q Consensus 137 ~~~i~~L~~~C~ 148 (591)
+|+++.|++.|+
T Consensus 79 ~~~~~~l~~~c~ 90 (90)
T smart00225 79 YLQIPGLVELCE 90 (90)
T ss_pred HHCcHHHHhhhC
Confidence 999999999984
No 53
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=7.9e-14 Score=144.05 Aligned_cols=258 Identities=13% Similarity=0.096 Sum_probs=206.7
Q ss_pred HHhhhHHhhhccHHHHHHHHHHHhhcccc--chhhhhHHHHHHhCChHHHHHHHHHH--HH-hcCC----CHHHHHHHHh
Q 007721 260 HQLGCVMFEREEYKDACYYFEAAADAGHI--YSLAGLARAKYKVGQQYSAYKLINSI--IS-EHKP----TGWMYQERSL 330 (591)
Q Consensus 260 ~~lG~~~~~~g~~~eA~~~f~~Al~~~~~--~a~~~la~~~~~~G~~~~A~~~~~~a--I~-~~~~----~g~a~~~r~~ 330 (591)
.+.|.+.....++++|+..|+...+-+|= .-.....++++.+.+...-...-..+ |. .+|. .|.-|--|+.
T Consensus 266 ~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~e 345 (559)
T KOG1155|consen 266 TQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSE 345 (559)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHh
Confidence 45677888899999999999986665331 11222334455444422111111112 22 2333 4666666655
Q ss_pred cCCcHHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHH
Q 007721 331 YNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTL 409 (591)
Q Consensus 331 y~~~~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p-~~~~~~~r~~~~~~~g~~~~A~~d~~ 409 (591)
. ++|+..|.+|++|||....+|.-.|-=|+++++-..|+..|++|+.++| |..+|+..|.+|.-++-..=|+-.|+
T Consensus 346 H---EKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfq 422 (559)
T KOG1155|consen 346 H---EKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQ 422 (559)
T ss_pred H---HHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHH
Confidence 5 9999999999999999999999999999999999999999999999999 69999999999999999999999999
Q ss_pred HHHhcCCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccc-hHHHHHHHHHcCCCCchhHhhhHHHHH
Q 007721 410 ALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIG-SLAVINQMLINDPGKSFLRFRQSLLLL 488 (591)
Q Consensus 410 ~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~-al~~~~~al~~~P~~~~~~~~~g~~l~ 488 (591)
+|+++-|++ -..|..+++..++.++.. |..+|-+|+...-.++.++.++|.++.
T Consensus 423 kA~~~kPnD-------------------------sRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye 477 (559)
T KOG1155|consen 423 KALELKPND-------------------------SRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYE 477 (559)
T ss_pred HHHhcCCCc-------------------------hHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 999999998 345556666666666655 689999999999999999999999999
Q ss_pred HhCCHHHHHHHHHHHHh-------cCCchHHHHHhHHHHHHHcCCHHHHHHHHHHhhcccccHH
Q 007721 489 RLNCQKAAMRCLRLARN-------HSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE 545 (591)
Q Consensus 489 ~l~~~~eA~~~~~~Al~-------l~p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l~~~~~ 545 (591)
++++.++|...|.+-++ ..|.--.|...++....+.+++++|-....++..-.+.-|
T Consensus 478 ~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~e 541 (559)
T KOG1155|consen 478 ELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECE 541 (559)
T ss_pred HHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHH
Confidence 99999999999999998 6787788889999999999999999988888877654443
No 54
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.64 E-value=1.2e-14 Score=138.59 Aligned_cols=173 Identities=18% Similarity=0.082 Sum_probs=136.2
Q ss_pred CHHHHHHHHhcCCcHHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcC
Q 007721 321 TGWMYQERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAAD 399 (591)
Q Consensus 321 ~g~a~~~r~~y~~~~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~-~~~~~~r~~~~~~~g 399 (591)
+|..|.+++.+ ..|..-+++|++.||+...+|.-||.+|+.+|..+.|-+.|++|+.++|+ .+.++|-|+++..+|
T Consensus 41 Lal~YL~~gd~---~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 41 LALGYLQQGDY---AQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHCCCH---HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCC
Confidence 34445555444 77888899999999999999999999999999999999999999999996 688889999999999
Q ss_pred CHHHHHHHHHHHHhcCCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccchHHHHHHHHHcCCCCchh
Q 007721 400 DYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFL 479 (591)
Q Consensus 400 ~~~~A~~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~~P~~~~~ 479 (591)
++++|...|++|++ +|.| |..++.
T Consensus 118 ~~~eA~q~F~~Al~-~P~Y-------------------------------------------------------~~~s~t 141 (250)
T COG3063 118 RPEEAMQQFERALA-DPAY-------------------------------------------------------GEPSDT 141 (250)
T ss_pred ChHHHHHHHHHHHh-CCCC-------------------------------------------------------CCcchh
Confidence 99999999999986 6877 233456
Q ss_pred HhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHHHHHHHHhhcccccHHHHHHHHH
Q 007721 480 RFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAY 552 (591)
Q Consensus 480 ~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l~~~~~~~~~~~~ 552 (591)
|-|.|.|-++.|.+..|...|+++++++|+++.+.-.+.-.+|+.|+|-.|-..+++--.--+-...=.+.|+
T Consensus 142 ~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~i 214 (250)
T COG3063 142 LENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGI 214 (250)
T ss_pred hhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHH
Confidence 6777777777777777777777777777777777777777777777777777777765554443333333333
No 55
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.63 E-value=1.8e-15 Score=153.11 Aligned_cols=179 Identities=15% Similarity=0.079 Sum_probs=150.3
Q ss_pred CCCCCCceEEEEcCeEEEhhHHHHhhcCHHHHHhhcCCCCCCCCc--eeEecCCCCCHHHHHHHHHHHhcCCCCCCChhH
Q 007721 50 SLEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRK--TIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGI 127 (591)
Q Consensus 50 ~~~~~~~V~f~v~g~~~~aHr~iLaa~S~yF~amf~~~~~Es~~~--~I~l~~~~vs~~~~~~ll~ylYtg~~~~~~~~~ 127 (591)
+..+.++|.+..=|++.+.||.-| ..|+||++||.|.|+|+.++ .++|+.+.|+..+|..++.-+|.++++ |..+.
T Consensus 65 ~q~enSDv~l~alg~eWrlHk~yL-~QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEve-I~l~d 142 (488)
T KOG4682|consen 65 LQGENSDVILEALGFEWRLHKPYL-FQSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVE-IKLSD 142 (488)
T ss_pred hcCCCcceehhhccceeeeeeeee-eccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhhee-ccHHH
Confidence 345667799999999999999999 67999999999999999998 556667899999999999999999999 99999
Q ss_pred HHHHHHHHhhhChHHHHHHHHHHHHhhcCCHHhHHHHHHHHHHhChHHHHHHHHHHHHhhhHhhhCCcccccc-------
Q 007721 128 VLELLSFANRFCCEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVMKI------- 200 (591)
Q Consensus 128 v~~lL~~A~~~~i~~L~~~C~~~L~~~i~~~~n~~~ll~~A~~~~~~~L~~~c~~~i~~n~~~v~~~~~f~~l------- 200 (591)
|..+|.+|..+++++|.+.|.+-|...++ +++++.+++.+-.|+...+.+.|++++..|+..+....-+.++
T Consensus 143 v~gvlAaA~~lqldgl~qrC~evMie~ls-pkta~~yYea~ckYgle~vk~kc~ewl~~nl~~i~~~q~l~ei~~~Lm~~ 221 (488)
T KOG4682|consen 143 VVGVLAAACLLQLDGLIQRCGEVMIETLS-PKTACGYYEAACKYGLESVKKKCLEWLLNNLMTIQNVQLLKEISINLMKQ 221 (488)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhcC-hhhhhHhhhhhhhhhhHHHHHHHHHHHHHhhHhhhhHHHHHhcCHHHHHH
Confidence 99999999999999999999999999999 8999999999999999999999999999999988766644443
Q ss_pred -ccCchhhhhHhhhcchhHHHHHHHHHhhhhccccc
Q 007721 201 -FCSSEATERLANVGHASFLLYYFLSQVAMEKDRVS 235 (591)
Q Consensus 201 -~~~~~~~~~~~~~~~~~~~~~a~Ls~v~~d~~~r~ 235 (591)
+.|++.- ....+.-++-....|+-+...+..
T Consensus 222 ll~SpnLf----vmq~EfdLyttlk~WmfLql~pd~ 253 (488)
T KOG4682|consen 222 LLGSPNLF----VMQVEFDLYTTLKKWMFLQLVPDW 253 (488)
T ss_pred HhCCCCeE----EEEeeehHHHHHHHHHHhhhcccc
Confidence 2233221 111233344577788877655543
No 56
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.62 E-value=1.3e-15 Score=155.99 Aligned_cols=243 Identities=16% Similarity=0.067 Sum_probs=109.3
Q ss_pred hhHHHHHHhCChHHHHHHHHHHHHhc--CCCHHHHHHHHhc----CCcHHHHHHHHHHHHcCCCChHHHHhHHHHHHHhC
Q 007721 293 GLARAKYKVGQQYSAYKLINSIISEH--KPTGWMYQERSLY----NLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEG 366 (591)
Q Consensus 293 ~la~~~~~~G~~~~A~~~~~~aI~~~--~~~g~a~~~r~~y----~~~~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~ 366 (591)
.+|.+++..|+++.|++.+.+.+... |+....+...+.. ...++|+..|++++..+|..+..+.+++.. ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 45888999999999999997765554 4444444434332 233889999999999999999999888888 7999
Q ss_pred CHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchhhhhhchHhHHHHHHHhhhcccCch
Q 007721 367 QIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALE--SNYMMFHGRVSGDHLVKLLNHHVRSWSPA 444 (591)
Q Consensus 367 ~~~eAl~~~~~al~l~p~~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~--P~~~~~~~~~~~~~~~~~l~~~~~~~~~a 444 (591)
++++|+..+.++.+..+++..+.....++...|+++++...++++.+.. |++ .......+.+.....++++|
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~------~~~~~~~a~~~~~~G~~~~A 165 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDS------ARFWLALAEIYEQLGDPDKA 165 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-------HHHHHHHHHHHHHCCHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCC------HHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999887777777666678999999999999999988755 333 22333444444444444444
Q ss_pred hhhhhhhhccccccccchHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHc
Q 007721 445 DCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDT 524 (591)
Q Consensus 445 ~~~~~l~~~~~~~~~~~al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~ 524 (591)
+.+++++|+++|+++.++...+.++...|+.++|.+.++...+..|+++..+..+|+++..+
T Consensus 166 ------------------~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~l 227 (280)
T PF13429_consen 166 ------------------LRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQL 227 (280)
T ss_dssp ------------------HHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHH
T ss_pred ------------------HHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccc
Confidence 89999999999999999999999999999999999999988888899999999999999999
Q ss_pred CCHHHHHHHHHHhhcccccHH-HHHHHHHHhhhcCCC
Q 007721 525 GHREEALSRAEKSISIERTFE-AFFLKAYILADTNLD 560 (591)
Q Consensus 525 g~~eeAl~~~e~ai~l~~~~~-~~~~~~~~~~~~~~~ 560 (591)
|++++|+..|+++++.+|+.. ....-|.+|...+--
T Consensus 228 g~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~ 264 (280)
T PF13429_consen 228 GRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRK 264 (280)
T ss_dssp T-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----
T ss_pred ccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999655 777888887766543
No 57
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.62 E-value=2.3e-14 Score=151.85 Aligned_cols=225 Identities=14% Similarity=0.126 Sum_probs=158.9
Q ss_pred HHhhhHHhhhccHHHHHHHHHHHhhcc--ccchhhhhHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHhc--CCc-
Q 007721 260 HQLGCVMFEREEYKDACYYFEAAADAG--HIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLY--NLG- 334 (591)
Q Consensus 260 ~~lG~~~~~~g~~~eA~~~f~~Al~~~--~~~a~~~la~~~~~~G~~~~A~~~~~~aI~~~~~~g~a~~~r~~y--~~~- 334 (591)
+..|+.+++.|.+-+|.-+|+.|+..+ |..+|..+|.++...+.-..|+.-+.+++++.|++-.++...+.. +.|
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 356777777888878888888877774 455777777777777766666666666666666654444444321 122
Q ss_pred -HHHHHHHHHHHHcCCCChHHHHh----HHH---HHHHhCCHHHHHHHHHHHHhcCC---ChHHHHHHHHHHHHcCCHHH
Q 007721 335 -REKIVDLNYASELDPTLSFPYKY----RAV---AKMEEGQIRAAISEIDRIIVFKL---SVDCLELRAWLFIAADDYES 403 (591)
Q Consensus 335 -~eA~~dl~~Ai~LdP~~~~ay~~----rg~---~l~~l~~~~eAl~~~~~al~l~p---~~~~~~~r~~~~~~~g~~~~ 403 (591)
.+|+..|.+.|+..|....--.. ++. -+..-..+..=.+.|..|-..+| +++....+|.+|.-.|+|+.
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 55666666666665532211110 000 00000112222233444444444 46666778899999999999
Q ss_pred HHHHHHHHHhcCCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccc-hHHHHHHHHHcCCCCchhHhh
Q 007721 404 ALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIG-SLAVINQMLINDPGKSFLRFR 482 (591)
Q Consensus 404 A~~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~-al~~~~~al~~~P~~~~~~~~ 482 (591)
|+.+|+.||..+|++ +..|.+|+-.+..-++.. |++.|+|||++.|+.+++++|
T Consensus 449 aiDcf~~AL~v~Pnd-------------------------~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyN 503 (579)
T KOG1125|consen 449 AVDCFEAALQVKPND-------------------------YLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYN 503 (579)
T ss_pred HHHHHHHHHhcCCch-------------------------HHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehh
Confidence 999999999999998 667777777777777777 899999999999999999999
Q ss_pred hHHHHHHhCCHHHHHHHHHHHHhcCCc
Q 007721 483 QSLLLLRLNCQKAAMRCLRLARNHSSS 509 (591)
Q Consensus 483 ~g~~l~~l~~~~eA~~~~~~Al~l~p~ 509 (591)
+|.....+|.++||...|=.||.+.+.
T Consensus 504 lgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 504 LGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999887
No 58
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.62 E-value=2.1e-13 Score=150.71 Aligned_cols=281 Identities=14% Similarity=0.126 Sum_probs=208.5
Q ss_pred HHHHhhhHHhhhccHHHHHHHHHHHhhccc--cchhhhhHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHhcC---
Q 007721 258 ALHQLGCVMFEREEYKDACYYFEAAADAGH--IYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYN--- 332 (591)
Q Consensus 258 a~~~lG~~~~~~g~~~eA~~~f~~Al~~~~--~~a~~~la~~~~~~G~~~~A~~~~~~aI~~~~~~g~a~~~r~~y~--- 332 (591)
.+...+...+.+|++++|+..+..+|...| ..++..+|.++-.+|+..++....-.|-.++|+.-..|...+.+.
T Consensus 141 ~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~ 220 (895)
T KOG2076|consen 141 QLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQL 220 (895)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhc
Confidence 344556667778999999999999999865 357888999999999999999888888888887766665554322
Q ss_pred -CcHHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCChHH------HHHHHHHHHHcCCHHHHH
Q 007721 333 -LGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDC------LELRAWLFIAADDYESAL 405 (591)
Q Consensus 333 -~~~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~~~~------~~~r~~~~~~~g~~~~A~ 405 (591)
....|.-+|++||.++|++...+..|+.+|.++|++..|+..|.+++.+.|..+. ...-+-.+...++-+.|+
T Consensus 221 ~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~ 300 (895)
T KOG2076|consen 221 GNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAA 300 (895)
T ss_pred ccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 2278999999999999999999999999999999999999999999999993211 111122344455545555
Q ss_pred HHHHHHHh--------------------------------------cCCcch----------------------hhhhhc
Q 007721 406 RDTLALLA--------------------------------------LESNYM----------------------MFHGRV 425 (591)
Q Consensus 406 ~d~~~al~--------------------------------------l~P~~~----------------------~~~~~~ 425 (591)
..+..++. +.||.. .+.-++
T Consensus 301 ~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v 380 (895)
T KOG2076|consen 301 KALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV 380 (895)
T ss_pred HHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh
Confidence 55555544 111110 011111
Q ss_pred ----------hHhHHHHHHHhhhcccC-----chhhhhhhhhccccccccc-hHHHHHHHHHcCCCC-chhHhhhHHHHH
Q 007721 426 ----------SGDHLVKLLNHHVRSWS-----PADCWIKLYDRWSSVDDIG-SLAVINQMLINDPGK-SFLRFRQSLLLL 488 (591)
Q Consensus 426 ----------~~~~~~~~l~~~~~~~~-----~a~~~~~l~~~~~~~~~~~-al~~~~~al~~~P~~-~~~~~~~g~~l~ 488 (591)
....+.+.+.+-+...+ ..+-+.++.+.+...+.+. |+..+.+.+...+.. +..|.++|.++.
T Consensus 381 ~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~ 460 (895)
T KOG2076|consen 381 IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYM 460 (895)
T ss_pred HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHH
Confidence 12223333333333222 3444556666666667777 888888888887754 468999999999
Q ss_pred HhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHHHHHHHHhh
Q 007721 489 RLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSI 538 (591)
Q Consensus 489 ~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai 538 (591)
.+|.+++|+..|.+++.++|++-++...++.+++.+|+.|+|++..++-+
T Consensus 461 ~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 461 ELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999866
No 59
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.60 E-value=7.7e-13 Score=142.88 Aligned_cols=279 Identities=12% Similarity=0.017 Sum_probs=208.9
Q ss_pred chhHHHHHHHHhhcchhhhHHHHHHHHhhhHHhhhccHHHHHHHHHHHhhccccc---hhhhhHHHHHHhCChHHHHHHH
Q 007721 235 SNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIY---SLAGLARAKYKVGQQYSAYKLI 311 (591)
Q Consensus 235 ~~~~v~lLe~~~~~~~~~~~~~~a~~~lG~~~~~~g~~~eA~~~f~~Al~~~~~~---a~~~la~~~~~~G~~~~A~~~~ 311 (591)
.+.+...+.+..+..++ ....+...+.+....|++++|..++.++.+..+.. .....++++...|+++.|...+
T Consensus 100 ~~~A~~~l~~~~~~~~~---~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l 176 (409)
T TIGR00540 100 YAKAEKLIAKNADHAAE---PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGV 176 (409)
T ss_pred HHHHHHHHHHHhhcCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 44555566555544333 23455567888899999999999999998774332 2223488899999999999999
Q ss_pred HHHHHhcCCCHHHHHHHHhc----CCcHHHHHHHHHHHHcCCCChHHHH----hHHHHHHHhCCHHHHHHHHHHHHhcCC
Q 007721 312 NSIISEHKPTGWMYQERSLY----NLGREKIVDLNYASELDPTLSFPYK----YRAVAKMEEGQIRAAISEIDRIIVFKL 383 (591)
Q Consensus 312 ~~aI~~~~~~g~a~~~r~~y----~~~~eA~~dl~~Ai~LdP~~~~ay~----~rg~~l~~l~~~~eAl~~~~~al~l~p 383 (591)
.+..+..|+.+.++.-.+.. +..++|...+.+..+..+.....+. ....-++..+..+++++.+.++.+..|
T Consensus 177 ~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p 256 (409)
T TIGR00540 177 DKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQP 256 (409)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCC
Confidence 99999999987766544321 2227888889999987655444332 222233555666777889999998888
Q ss_pred -----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhcccccc
Q 007721 384 -----SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVD 458 (591)
Q Consensus 384 -----~~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~ 458 (591)
++..+...+..+...|++++|+..++++++..|++.... ...+ ..+..... +
T Consensus 257 ~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~----~~~l------------------~~~~~l~~-~ 313 (409)
T TIGR00540 257 RHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAIS----LPLC------------------LPIPRLKP-E 313 (409)
T ss_pred HHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccch----hHHH------------------HHhhhcCC-C
Confidence 467677788899999999999999999999999873100 0011 11111111 2
Q ss_pred ccc-hHHHHHHHHHcCCCCc--hhHhhhHHHHHHhCCHHHHHHHHH--HHHhcCCchHHHHHhHHHHHHHcCCHHHHHHH
Q 007721 459 DIG-SLAVINQMLINDPGKS--FLRFRQSLLLLRLNCQKAAMRCLR--LARNHSSSEHERLVYEGWILYDTGHREEALSR 533 (591)
Q Consensus 459 ~~~-al~~~~~al~~~P~~~--~~~~~~g~~l~~l~~~~eA~~~~~--~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~ 533 (591)
+.. ++..++++++.+|+++ .++..+|.++.++|++++|.+.++ ++++..|++.. +..+|.++..+|+.++|.+.
T Consensus 314 ~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~ 392 (409)
T TIGR00540 314 DNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAM 392 (409)
T ss_pred ChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHH
Confidence 222 4778999999999999 899999999999999999999999 68889998776 55999999999999999999
Q ss_pred HHHhhcc
Q 007721 534 AEKSISI 540 (591)
Q Consensus 534 ~e~ai~l 540 (591)
|++++.+
T Consensus 393 ~~~~l~~ 399 (409)
T TIGR00540 393 RQDSLGL 399 (409)
T ss_pred HHHHHHH
Confidence 9998654
No 60
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.59 E-value=9.3e-13 Score=141.71 Aligned_cols=276 Identities=12% Similarity=0.044 Sum_probs=165.3
Q ss_pred HHHHHHHhhhHHhhhccHHHHHHHHHHHhhcc-ccc-hhhhhHHHHHHhCChHHHHHHHHHHHHhcCCCHHHH-------
Q 007721 255 RMLALHQLGCVMFEREEYKDACYYFEAAADAG-HIY-SLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMY------- 325 (591)
Q Consensus 255 ~~~a~~~lG~~~~~~g~~~eA~~~f~~Al~~~-~~~-a~~~la~~~~~~G~~~~A~~~~~~aI~~~~~~g~a~------- 325 (591)
++......|......|++++|.+...++-+.. .+. .+...+.....+|+++.|...+.++.+..|+...+.
T Consensus 83 ~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l 162 (398)
T PRK10747 83 RARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRI 162 (398)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 44556778988888999999998777665542 222 233335566899999999999999988887754322
Q ss_pred -HHHHhcCCcHHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCC-hHHHH-HHHHHH---HHcC
Q 007721 326 -QERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLE-LRAWLF---IAAD 399 (591)
Q Consensus 326 -~~r~~y~~~~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~-~~~~~-~r~~~~---~~~g 399 (591)
...+.+ ++|...++++.+.+|+++.++..++.+|+..|++++|+..+.+..+..+. ++... .++.++ ....
T Consensus 163 ~l~~g~~---~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~ 239 (398)
T PRK10747 163 QLARNEN---HAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQA 239 (398)
T ss_pred HHHCCCH---HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 222333 88999999999999999999999999999999999999888888877663 32221 222111 1111
Q ss_pred CHHHHHHHHHHHHhcCCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccc-hHHHHHHHHHcCCCCch
Q 007721 400 DYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIG-SLAVINQMLINDPGKSF 478 (591)
Q Consensus 400 ~~~~A~~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~-al~~~~~al~~~P~~~~ 478 (591)
.-+.....+.++.+--|...+ ....+. ..+...+...++.+ |...+++++. .|+++.
T Consensus 240 ~~~~~~~~l~~~w~~lp~~~~--~~~~~~-------------------~~~A~~l~~~g~~~~A~~~L~~~l~-~~~~~~ 297 (398)
T PRK10747 240 MADQGSEGLKRWWKNQSRKTR--HQVALQ-------------------VAMAEHLIECDDHDTAQQIILDGLK-RQYDER 297 (398)
T ss_pred HHhcCHHHHHHHHHhCCHHHh--CCHHHH-------------------HHHHHHHHHCCCHHHHHHHHHHHHh-cCCCHH
Confidence 111112223333222222100 001111 11112222223333 4556666666 344444
Q ss_pred hHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHHHHHHHHhhcccccHHHHHHHHHHhhhc
Q 007721 479 LRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADT 557 (591)
Q Consensus 479 ~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l~~~~~~~~~~~~~~~~~ 557 (591)
+....+.+ ..+++++|+..+++.++..|++++.+..+|.+++..|++++|...+|++++++|+.+.|...|-++.-.
T Consensus 298 l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~ 374 (398)
T PRK10747 298 LVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRL 374 (398)
T ss_pred HHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Confidence 33333332 236666666666666666666666666666666666666666666666666666666666655555533
No 61
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.58 E-value=1.7e-15 Score=163.96 Aligned_cols=133 Identities=20% Similarity=0.295 Sum_probs=118.0
Q ss_pred cCeEEEhhHHHHhhcCHHHHHhhcCCCCCCCCceeEecCCCCCHHHHHHHHHHHh-cCCCCC----CChhHHHHHHHHHh
Q 007721 62 RDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTR-TSRVDL----FCPGIVLELLSFAN 136 (591)
Q Consensus 62 ~g~~~~aHr~iLaa~S~yF~amf~~~~~Es~~~~I~l~~~~vs~~~~~~ll~ylY-tg~~~~----~~~~~v~~lL~~A~ 136 (591)
+|+.++|||++|++|++||..||...|.|+..-.+.. -.+..+.|+.+|+|+| +++... -..+.+.++|..|+
T Consensus 719 DGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~~--~p~~~e~m~ivLdylYs~d~~~~~k~~~~~dF~~~il~iaD 796 (1267)
T KOG0783|consen 719 DGKVLKAHKCFLSARLEYFSSMFQFVWMESSSITVNL--SPLTVEHMSIVLDYLYSDDKVELFKDLKESDFMFEILSIAD 796 (1267)
T ss_pred CCcCcccceeEeeeHHHHHHHHHHHHHhhhccceeec--CcchHHHHHHHHHHHHccchHHHHhccchhhhhHHHHHHHH
Confidence 7888999999999999999999999999998755555 5667999999999999 454432 24467899999999
Q ss_pred hhChHHHHHHHHHHHHhhcCCHHhHHHHHHHHHHhChHHHHHHHHHHHHhhhHhhhCCccc
Q 007721 137 RFCCEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKV 197 (591)
Q Consensus 137 ~~~i~~L~~~C~~~L~~~i~~~~n~~~ll~~A~~~~~~~L~~~c~~~i~~n~~~v~~~~~f 197 (591)
.|.|.+||..|+.-|...++ ..||-.+++||.+|++++|...|++||+.|+..++.-.+.
T Consensus 797 qlli~~Lk~Ice~~ll~kl~-lk~~~~llefaamY~ak~L~~~C~dfic~N~~~~Learsi 856 (1267)
T KOG0783|consen 797 QLLILELKSICEQSLLRKLN-LKTLPTLLEFAAMYHAKELYSRCIDFICHNIEFFLEARSI 856 (1267)
T ss_pred HHHHHHHHHHHHHHHHhHhc-ccchHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHhccH
Confidence 99999999999999999999 9999999999999999999999999999999988754443
No 62
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=1.8e-13 Score=144.17 Aligned_cols=233 Identities=14% Similarity=0.098 Sum_probs=163.1
Q ss_pred HHHHHHhhhHHhhhccHHHHHHHHHHHhhccc-cchhhhhHHHHHHhCChHHHHHHHHHHHHhcC--------------C
Q 007721 256 MLALHQLGCVMFEREEYKDACYYFEAAADAGH-IYSLAGLARAKYKVGQQYSAYKLINSIISEHK--------------P 320 (591)
Q Consensus 256 ~~a~~~lG~~~~~~g~~~eA~~~f~~Al~~~~-~~a~~~la~~~~~~G~~~~A~~~~~~aI~~~~--------------~ 320 (591)
+...-.+|......+++..|+++|.+++++.. ...+.+.+.+++..|.+..++....++++... .
T Consensus 224 a~~ek~lgnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r 303 (539)
T KOG0548|consen 224 AHKEKELGNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALAR 303 (539)
T ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHH
Confidence 44567899999999999999999999999962 23456678899999999988888877766431 1
Q ss_pred CHHHHHHHHhcCCcHHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcC
Q 007721 321 TGWMYQERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAAD 399 (591)
Q Consensus 321 ~g~a~~~r~~y~~~~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~-~~~~~~r~~~~~~~g 399 (591)
.|.+|..++.| +.++..|.+++.- .....++-.++..++++.+..+..-++|. .......|..++..|
T Consensus 304 ~g~a~~k~~~~---~~ai~~~~kaLte--------~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~g 372 (539)
T KOG0548|consen 304 LGNAYTKREDY---EGAIKYYQKALTE--------HRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKG 372 (539)
T ss_pred hhhhhhhHHhH---HHHHHHHHHHhhh--------hcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhcc
Confidence 34455555444 6666666664432 22266667777777777777777777775 333445677777777
Q ss_pred CHHHHHHHHHHHHhcCCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccchHHHHHHHHHcCCCCchh
Q 007721 400 DYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFL 479 (591)
Q Consensus 400 ~~~~A~~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~~P~~~~~ 479 (591)
||..|+..|++||..+|++.-+|++.++.+ ..|... ..+|.+.+.+++++|....+
T Consensus 373 dy~~Av~~YteAIkr~P~Da~lYsNRAac~------------------~kL~~~------~~aL~Da~~~ieL~p~~~kg 428 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKRDPEDARLYSNRAACY------------------LKLGEY------PEALKDAKKCIELDPNFIKA 428 (539)
T ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHH------------------HHHhhH------HHHHHHHHHHHhcCchHHHH
Confidence 777777777777777777755555544433 233222 11366777777777777777
Q ss_pred HhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHH
Q 007721 480 RFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYD 523 (591)
Q Consensus 480 ~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~ 523 (591)
|+++|.++..+.++..|++.|+.+++++|++.++....+-|.-.
T Consensus 429 y~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 429 YLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777665
No 63
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.54 E-value=5e-12 Score=137.90 Aligned_cols=118 Identities=19% Similarity=0.155 Sum_probs=97.4
Q ss_pred HhCChHHHHHHHHHHHHhcC------------CCHHHHHHHHhcC--------CcHHHHHHHHHHHHcCCCChHHHHhHH
Q 007721 300 KVGQQYSAYKLINSIISEHK------------PTGWMYQERSLYN--------LGREKIVDLNYASELDPTLSFPYKYRA 359 (591)
Q Consensus 300 ~~G~~~~A~~~~~~aI~~~~------------~~g~a~~~r~~y~--------~~~eA~~dl~~Ai~LdP~~~~ay~~rg 359 (591)
..|...++++...++|.... -.|.+|..+..-. ...+++..+++|+++||+++.+.++++
T Consensus 406 ~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~la 485 (799)
T KOG4162|consen 406 RLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLA 485 (799)
T ss_pred chhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence 45566777777777777321 1355555543211 116788999999999999999999999
Q ss_pred HHHHHhCCHHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Q 007721 360 VAKMEEGQIRAAISEIDRIIVFKLS--VDCLELRAWLFIAADDYESALRDTLALLALESN 417 (591)
Q Consensus 360 ~~l~~l~~~~eAl~~~~~al~l~p~--~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~ 417 (591)
.=|..+++.+.|+...++++++++. +.+|+..+.++-..+|+.+|+.-.+.+++=-|+
T Consensus 486 lq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~ 545 (799)
T KOG4162|consen 486 LQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD 545 (799)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999883 788999999999999999999999999998888
No 64
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.54 E-value=1e-11 Score=143.07 Aligned_cols=319 Identities=10% Similarity=0.008 Sum_probs=194.2
Q ss_pred chhHHHHHHHHhhcchhhhHHHHHHHHhhhHHhhhccHHHHHHHHHHHhhcccc--chhhhhHHHHHHhCChHHHHHHHH
Q 007721 235 SNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHI--YSLAGLARAKYKVGQQYSAYKLIN 312 (591)
Q Consensus 235 ~~~~v~lLe~~~~~~~~~~~~~~a~~~lG~~~~~~g~~~eA~~~f~~Al~~~~~--~a~~~la~~~~~~G~~~~A~~~~~ 312 (591)
.+.++..+++++ .+++. ...++-.+|.++...|++++|++.|+++++..|. .++.+++..+...|+.++|+..+.
T Consensus 84 ~~~A~~~~eka~--~p~n~-~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~ 160 (822)
T PRK14574 84 DQEVIDVYERYQ--SSMNI-SSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQAT 160 (822)
T ss_pred cHHHHHHHHHhc--cCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 445555666554 22111 1233334466777778888888888888877543 455566677777888888888888
Q ss_pred HHHHhcCCCHHHHHHHHh-c---CCcHHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHH-------------------
Q 007721 313 SIISEHKPTGWMYQERSL-Y---NLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIR------------------- 369 (591)
Q Consensus 313 ~aI~~~~~~g~a~~~r~~-y---~~~~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~------------------- 369 (591)
+++...|..-.. ..++. + ....+|+..|+++++++|++..++..+..++.+.|-..
T Consensus 161 ~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~ 239 (822)
T PRK14574 161 ELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYR 239 (822)
T ss_pred HhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHH
Confidence 888777763332 22221 1 22246888888888888888888877776666655432
Q ss_pred -----------------------------HHHHHHHHHHhcC---CChHHHH-----HHHHHHHHcCCHHHHHHHHHHHH
Q 007721 370 -----------------------------AAISEIDRIIVFK---LSVDCLE-----LRAWLFIAADDYESALRDTLALL 412 (591)
Q Consensus 370 -----------------------------eAl~~~~~al~l~---p~~~~~~-----~r~~~~~~~g~~~~A~~d~~~al 412 (591)
.|++.+++.+..- |.....+ -|-.++...|++++++..|+...
T Consensus 240 ~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~ 319 (822)
T PRK14574 240 QLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAME 319 (822)
T ss_pred HHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 2555666666532 3211122 23356788888888888888777
Q ss_pred hcC---Ccchh------hhhhch---HhHHHHHH-Hhhhcc---cCchhhhhhhhhccccccccc-hHHHHHHHHHcCCC
Q 007721 413 ALE---SNYMM------FHGRVS---GDHLVKLL-NHHVRS---WSPADCWIKLYDRWSSVDDIG-SLAVINQMLINDPG 475 (591)
Q Consensus 413 ~l~---P~~~~------~~~~~~---~~~~~~~l-~~~~~~---~~~a~~~~~l~~~~~~~~~~~-al~~~~~al~~~P~ 475 (591)
... |.|+. |..... |..+...+ ...... .....-...||......++++ |...+++.....|.
T Consensus 320 ~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~ 399 (822)
T PRK14574 320 AEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPY 399 (822)
T ss_pred hcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCc
Confidence 544 55531 000000 11111111 111000 001111134455555556666 66677777775552
Q ss_pred ---------------CchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHHHHHHHHhhcc
Q 007721 476 ---------------KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISI 540 (591)
Q Consensus 476 ---------------~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l 540 (591)
-.++...++.++...|+..+|++.++..+...|.|++....+|.++-..|+..+|.+.++++..+
T Consensus 400 ~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 400 QVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESL 479 (822)
T ss_pred EEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 12345567777778888888888888888888888888888888888888888888888888888
Q ss_pred cccHH-HHHHHHHHhhhc
Q 007721 541 ERTFE-AFFLKAYILADT 557 (591)
Q Consensus 541 ~~~~~-~~~~~~~~~~~~ 557 (591)
.|... +.+.+|++..|-
T Consensus 480 ~P~~~~~~~~~~~~al~l 497 (822)
T PRK14574 480 APRSLILERAQAETAMAL 497 (822)
T ss_pred CCccHHHHHHHHHHHHhh
Confidence 77766 777777765543
No 65
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.53 E-value=6.3e-13 Score=132.27 Aligned_cols=181 Identities=12% Similarity=0.029 Sum_probs=141.6
Q ss_pred HcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCC-h---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhh
Q 007721 346 ELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-V---DCLELRAWLFIAADDYESALRDTLALLALESNYMMF 421 (591)
Q Consensus 346 ~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~-~---~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~ 421 (591)
..++..+..++.+|..+...|++++|+..|++++..+|+ + ..++.+|.++..+|++++|+..|+++++.+|++...
T Consensus 27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 106 (235)
T TIGR03302 27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA 106 (235)
T ss_pred CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch
Confidence 566788899999999999999999999999999999995 3 466889999999999999999999999999987531
Q ss_pred hhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccc-hHHHHHHHHHcCCCCchhH-----------------hhh
Q 007721 422 HGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIG-SLAVINQMLINDPGKSFLR-----------------FRQ 483 (591)
Q Consensus 422 ~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~-al~~~~~al~~~P~~~~~~-----------------~~~ 483 (591)
.-+...++...... .+ ......++.+ |+..+++++..+|.+..++ ..+
T Consensus 107 ---~~a~~~~g~~~~~~----~~-------~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~ 172 (235)
T TIGR03302 107 ---DYAYYLRGLSNYNQ----ID-------RVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYV 172 (235)
T ss_pred ---HHHHHHHHHHHHHh----cc-------cccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 01223333222111 00 0011112232 6889999999999997653 467
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCc---hHHHHHhHHHHHHHcCCHHHHHHHHHHhhcc
Q 007721 484 SLLLLRLNCQKAAMRCLRLARNHSSS---EHERLVYEGWILYDTGHREEALSRAEKSISI 540 (591)
Q Consensus 484 g~~l~~l~~~~eA~~~~~~Al~l~p~---~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l 540 (591)
|.++.+.|++++|+..++++++..|+ .+++++.+|+++..+|++++|.+.+++....
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 88899999999999999999999765 4689999999999999999999877665443
No 66
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.53 E-value=3.3e-12 Score=147.17 Aligned_cols=313 Identities=11% Similarity=0.019 Sum_probs=221.5
Q ss_pred HHHHHhhhHHhhhccHHHHHHHHHHHhhccccc--hhhhhHHHHHHhCChHHHHHHHHHHHHhcCCCHH-------HHHH
Q 007721 257 LALHQLGCVMFEREEYKDACYYFEAAADAGHIY--SLAGLARAKYKVGQQYSAYKLINSIISEHKPTGW-------MYQE 327 (591)
Q Consensus 257 ~a~~~lG~~~~~~g~~~eA~~~f~~Al~~~~~~--a~~~la~~~~~~G~~~~A~~~~~~aI~~~~~~g~-------a~~~ 327 (591)
...+..+.+..+.|++++|+..|+++++..|.. +...+..++...|+..+|+..+++++...+.... .+.+
T Consensus 35 ~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~ 114 (822)
T PRK14574 35 DTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRN 114 (822)
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHH
Confidence 456788999999999999999999999997765 3446777888899999999999999944333222 3333
Q ss_pred HHhcCCcHHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCHHHHHHH
Q 007721 328 RSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRD 407 (591)
Q Consensus 328 r~~y~~~~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~~~~~~~r~~~~~~~g~~~~A~~d 407 (591)
.+.| ++|++.|+++++.+|+++.++..++.++.+.++.++|+..+++++..+|+...+..++.++..+++..+|+..
T Consensus 115 ~gdy---d~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~ 191 (822)
T PRK14574 115 EKRW---DQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQA 191 (822)
T ss_pred cCCH---HHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHH
Confidence 3444 8999999999999999999999999999999999999999999999999855555567777778888889999
Q ss_pred HHHHHhcCCcchhh-hhhchHh-------HHHHHHHhhhcccCchh----------hhhhhh--hcccccccc---c-hH
Q 007721 408 TLALLALESNYMMF-HGRVSGD-------HLVKLLNHHVRSWSPAD----------CWIKLY--DRWSSVDDI---G-SL 463 (591)
Q Consensus 408 ~~~al~l~P~~~~~-~~~~~~~-------~~~~~l~~~~~~~~~a~----------~~~~l~--~~~~~~~~~---~-al 463 (591)
|+++++++|++..+ .....+. -...++.....-++..+ -+++.. ...+.-.++ + ++
T Consensus 192 ~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~al 271 (822)
T PRK14574 192 SSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKAL 271 (822)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHH
Confidence 99999999998752 2222211 11122222222222222 111111 010111122 1 68
Q ss_pred HHHHHHHHcCCCCch-------hHhhhHHHHHHhCCHHHHHHHHHHHHhcC-CchHHHHHhHHHHHHHcCCHHHHHHHHH
Q 007721 464 AVINQMLINDPGKSF-------LRFRQSLLLLRLNCQKAAMRCLRLARNHS-SSEHERLVYEGWILYDTGHREEALSRAE 535 (591)
Q Consensus 464 ~~~~~al~~~P~~~~-------~~~~~g~~l~~l~~~~eA~~~~~~Al~l~-p~~~~a~~~~G~~l~~~g~~eeAl~~~e 535 (591)
+.+++.+..-|..|. +++-+=.+|..+|++.++++.|+...... |--.++....|-.+..+++-++|.+.|+
T Consensus 272 a~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~ 351 (822)
T PRK14574 272 ADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILS 351 (822)
T ss_pred HHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 888888885554443 34456678888999999999999887555 3345588899999999999999999999
Q ss_pred Hhhcccc-------cHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHhc
Q 007721 536 KSISIER-------TFEAFFLKAYILADTNLDPESSTYVIQLLEEALR 576 (591)
Q Consensus 536 ~ai~l~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (591)
+++.=+| +.+...-.-||+-| .+-=..-.++|++..+
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~L~yA~ld----~e~~~~A~~~l~~~~~ 395 (822)
T PRK14574 352 SLYYSDGKTFRNSDDLLDADDLYYSLNE----SEQLDKAYQFAVNYSE 395 (822)
T ss_pred HHhhccccccCCCcchHHHHHHHHHHHh----cccHHHHHHHHHHHHh
Confidence 9987543 22223344555544 4444445556655555
No 67
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.51 E-value=6.6e-13 Score=150.27 Aligned_cols=158 Identities=9% Similarity=-0.083 Sum_probs=134.4
Q ss_pred HHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007721 336 EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLAL 414 (591)
Q Consensus 336 eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~-~~~~~~r~~~~~~~g~~~~A~~d~~~al~l 414 (591)
+++..+..-.+--|+++.++.++|.+....|+++||...++++++++|+ ..+..+++.++.+++++++|+..+++++..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~ 149 (694)
T PRK15179 70 AALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG 149 (694)
T ss_pred hhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc
Confidence 3344344445556888999999999999999999999999999999997 677788999999999999998877777666
Q ss_pred CCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccchHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHH
Q 007721 415 ESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQK 494 (591)
Q Consensus 415 ~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~ 494 (591)
+|++ +.+++.+|.+|.++|+++
T Consensus 150 ~p~~----------------------------------------------------------~~~~~~~a~~l~~~g~~~ 171 (694)
T PRK15179 150 GSSS----------------------------------------------------------AREILLEAKSWDEIGQSE 171 (694)
T ss_pred CCCC----------------------------------------------------------HHHHHHHHHHHHHhcchH
Confidence 6655 567888999999999999
Q ss_pred HHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHHHHHHHHhhcc-cccHHHHHHHH
Q 007721 495 AAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISI-ERTFEAFFLKA 551 (591)
Q Consensus 495 eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l-~~~~~~~~~~~ 551 (591)
+|.+.|+++++-+|+++++++++|.+|..+|+.++|...|++|++. .|..-+|...+
T Consensus 172 ~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 172 QADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 9999999999999999999999999999999999999999999997 45554554443
No 68
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=1.9e-13 Score=139.62 Aligned_cols=230 Identities=16% Similarity=0.153 Sum_probs=155.6
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCChHHHHH-HHHHHHHcCC
Q 007721 322 GWMYQERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLEL-RAWLFIAADD 400 (591)
Q Consensus 322 g~a~~~r~~y~~~~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~~~~~~~-r~~~~~~~g~ 400 (591)
|..++....| .+|+..|+.||++.|+++.+|.+|+.+++.++++++|+-+.++.++++|.....+. -+.++..+++
T Consensus 56 gn~~yk~k~Y---~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~ 132 (486)
T KOG0550|consen 56 GNAFYKQKTY---GNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSD 132 (486)
T ss_pred cchHHHHhhH---HHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHH
Confidence 3344455555 77777888888888888888888888888888888888888888888776333333 3456666666
Q ss_pred HHHHHHHHHH------------HHhcCCcch----------------hhhhhchHhHHHHHHHhhhcccCchhhhhhhhh
Q 007721 401 YESALRDTLA------------LLALESNYM----------------MFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYD 452 (591)
Q Consensus 401 ~~~A~~d~~~------------al~l~P~~~----------------~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~ 452 (591)
..+|...|+- .-.+-|.+. ++.|+. ........+...-+-..++++...+-
T Consensus 133 ~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~-~~a~~ea~~ilkld~~n~~al~vrg~ 211 (486)
T KOG0550|consen 133 LIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDY-DEAQSEAIDILKLDATNAEALYVRGL 211 (486)
T ss_pred HHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccc-hhHHHHHHHHHhcccchhHHHHhccc
Confidence 6666544330 001111110 000000 11112222333333334444333333
Q ss_pred ccccccccc-hHHHHHHHHHcCCCCchh------------HhhhHHHHHHhCCHHHHHHHHHHHHhcCCch----HHHHH
Q 007721 453 RWSSVDDIG-SLAVINQMLINDPGKSFL------------RFRQSLLLLRLNCQKAAMRCLRLARNHSSSE----HERLV 515 (591)
Q Consensus 453 ~~~~~~~~~-al~~~~~al~~~P~~~~~------------~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~----~~a~~ 515 (591)
.....++.. +...++|+|.++|.+.++ |-.+|+=+.+.|++..|-+.|..||.++|++ +--|.
T Consensus 212 ~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~ 291 (486)
T KOG0550|consen 212 CLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYG 291 (486)
T ss_pred ccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHH
Confidence 333445555 677899999999988765 6678889999999999999999999999986 45589
Q ss_pred hHHHHHHHcCCHHHHHHHHHHhhcccccHH-HHHHHHHHhh
Q 007721 516 YEGWILYDTGHREEALSRAEKSISIERTFE-AFFLKAYILA 555 (591)
Q Consensus 516 ~~G~~l~~~g~~eeAl~~~e~ai~l~~~~~-~~~~~~~~~~ 555 (591)
|++.+...+||.+||+..-++|++|+|++. |+..+|-+..
T Consensus 292 nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l 332 (486)
T KOG0550|consen 292 NRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHL 332 (486)
T ss_pred HhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998 8888886543
No 69
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.51 E-value=1.2e-11 Score=130.43 Aligned_cols=268 Identities=14% Similarity=0.032 Sum_probs=181.8
Q ss_pred HHHHHHhhhHHhhhccHHHHHHHHHHHhhccccch--hhhhHHHHHHhCChHHHHHHHHHHH----HhcCCCHHHHHHHH
Q 007721 256 MLALHQLGCVMFEREEYKDACYYFEAAADAGHIYS--LAGLARAKYKVGQQYSAYKLINSII----SEHKPTGWMYQERS 329 (591)
Q Consensus 256 ~~a~~~lG~~~~~~g~~~eA~~~f~~Al~~~~~~a--~~~la~~~~~~G~~~~A~~~~~~aI----~~~~~~g~a~~~r~ 329 (591)
....+..+......|++++|...++++++..|.+. +.. +..+...|+...+.....+++ ...|....++...+
T Consensus 43 ~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a 121 (355)
T cd05804 43 RERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLA 121 (355)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHH
Confidence 34566788999999999999999999999866543 222 334555565544444455544 34455444443332
Q ss_pred h----cCCcHHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCC-h----HHHHHHHHHHHHcCC
Q 007721 330 L----YNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-V----DCLELRAWLFIAADD 400 (591)
Q Consensus 330 ~----y~~~~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~-~----~~~~~r~~~~~~~g~ 400 (591)
. .+..++|...++++++++|+++.++..+|.++.+.|++++|+..+++++...|. + ..+..++.++..+|+
T Consensus 122 ~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~ 201 (355)
T cd05804 122 FGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGD 201 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCC
Confidence 1 233389999999999999999999999999999999999999999999999873 2 234468899999999
Q ss_pred HHHHHHHHHHHHhcCCcchhhhhh-chHhHHHHHHHhhhcccCchhhhhhhhhccccccccchHHHHHHHHHcC--CCCc
Q 007721 401 YESALRDTLALLALESNYMMFHGR-VSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLIND--PGKS 477 (591)
Q Consensus 401 ~~~A~~d~~~al~l~P~~~~~~~~-~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~~--P~~~ 477 (591)
+++|+..|++++...|........ ..+... .. .........++-|-.+.+. . .... +...
T Consensus 202 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~-~~~~g~~~~~~~w~~~~~~-------------~--~~~~~~~~~~ 264 (355)
T cd05804 202 YEAALAIYDTHIAPSAESDPALDLLDAASLL-WR-LELAGHVDVGDRWEDLADY-------------A--AWHFPDHGLA 264 (355)
T ss_pred HHHHHHHHHHHhccccCCChHHHHhhHHHHH-HH-HHhcCCCChHHHHHHHHHH-------------H--HhhcCcccch
Confidence 999999999998888732111110 110100 00 0011112222211111111 0 1111 2222
Q ss_pred hhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCc---------hHHHHHhHHHHHHHcCCHHHHHHHHHHhhccc
Q 007721 478 FLRFRQSLLLLRLNCQKAAMRCLRLARNHSSS---------EHERLVYEGWILYDTGHREEALSRAEKSISIE 541 (591)
Q Consensus 478 ~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~---------~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l~ 541 (591)
.....++.++...|+.++|.+.++......-. .......++++++.+|++++|++...+|+.+-
T Consensus 265 ~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 265 FNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 33346888889999999999999887664422 46778999999999999999999999998764
No 70
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=1.7e-12 Score=137.34 Aligned_cols=216 Identities=11% Similarity=0.025 Sum_probs=167.8
Q ss_pred hhhhhHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHhc----CCcHHHHHHHHHHHHcCCCChHHHHhHHHHHHHh
Q 007721 290 SLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLY----NLGREKIVDLNYASELDPTLSFPYKYRAVAKMEE 365 (591)
Q Consensus 290 a~~~la~~~~~~G~~~~A~~~~~~aI~~~~~~g~a~~~r~~y----~~~~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l 365 (591)
+|..+|.-+...|.+.+|...+.++..++|.+|.+|..-|.. +..+.|++.|.+|.++=|....|..++|.=++..
T Consensus 314 sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t 393 (611)
T KOG1173|consen 314 SWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRT 393 (611)
T ss_pred chhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHh
Confidence 455555556666666666666666666666665555544432 2237899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchh-hhhhchHhHHHHHHHhhhcccCc
Q 007721 366 GQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMM-FHGRVSGDHLVKLLNHHVRSWSP 443 (591)
Q Consensus 366 ~~~~eAl~~~~~al~l~p~-~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~-~~~~~~~~~~~~~l~~~~~~~~~ 443 (591)
++++-|-..|..|+.+.|+ |-..+..|.+....+.|.+|+..|+++++.-+.... -.--.....++|.+...+..+++
T Consensus 394 ~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e 473 (611)
T KOG1173|consen 394 NNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE 473 (611)
T ss_pred ccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHH
Confidence 9999999999999999996 666777999999999999999999999943332110 00011234455555555555555
Q ss_pred hhhhhhhhhccccccccchHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHH
Q 007721 444 ADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYD 523 (591)
Q Consensus 444 a~~~~~l~~~~~~~~~~~al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~ 523 (591)
| +..++++|.+.|.++.+|-..|.++..+|.++.|+..|.+||.++|++.-+---+|.++-+
T Consensus 474 A------------------I~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 474 A------------------IDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred H------------------HHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 5 8899999999999999999999999999999999999999999999997776666655444
No 71
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.49 E-value=6.5e-12 Score=120.15 Aligned_cols=202 Identities=16% Similarity=0.099 Sum_probs=148.6
Q ss_pred HHHHHhhhHHhhhccHHHHHHHHHHHhhccccc--hhhhhHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHhcCCc
Q 007721 257 LALHQLGCVMFEREEYKDACYYFEAAADAGHIY--SLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLG 334 (591)
Q Consensus 257 ~a~~~lG~~~~~~g~~~eA~~~f~~Al~~~~~~--a~~~la~~~~~~G~~~~A~~~~~~aI~~~~~~g~a~~~r~~y~~~ 334 (591)
.+..+||.-|++.|++..|..-+++||+++|.+ ++..++.++..+|+.
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~------------------------------ 85 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGEN------------------------------ 85 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCh------------------------------
Confidence 456778999999999999999999999997765 566666666667765
Q ss_pred HHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCC----hHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007721 335 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS----VDCLELRAWLFIAADDYESALRDTLA 410 (591)
Q Consensus 335 ~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~----~~~~~~r~~~~~~~g~~~~A~~d~~~ 410 (591)
+.|-+.|++|+.++|++...++|-|.-+..+|++++|+.-|++|+. +|. ++.+.|.|+|-.+.|+.+.|...|+|
T Consensus 86 ~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~-~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~r 164 (250)
T COG3063 86 DLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALA-DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKR 164 (250)
T ss_pred hhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHh-CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHH
Confidence 4556678899999999999999999999999999999999999997 554 57789999999999999999999999
Q ss_pred HHhcCCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccchHHHHHHHHHcCCCCchhHhhhHHHHHHh
Q 007721 411 LLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRL 490 (591)
Q Consensus 411 al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~~P~~~~~~~~~g~~l~~l 490 (591)
+++++|++.. +........-..+++..| -..+++-...-+-.++..-..-.+-.++
T Consensus 165 aL~~dp~~~~------~~l~~a~~~~~~~~y~~A------------------r~~~~~~~~~~~~~A~sL~L~iriak~~ 220 (250)
T COG3063 165 ALELDPQFPP------ALLELARLHYKAGDYAPA------------------RLYLERYQQRGGAQAESLLLGIRIAKRL 220 (250)
T ss_pred HHHhCcCCCh------HHHHHHHHHHhcccchHH------------------HHHHHHHHhcccccHHHHHHHHHHHHHh
Confidence 9999999842 222222222222233333 3344444444444444333333344558
Q ss_pred CCHHHHHHHHHHHHhcCCchHHH
Q 007721 491 NCQKAAMRCLRLARNHSSSEHER 513 (591)
Q Consensus 491 ~~~~eA~~~~~~Al~l~p~~~~a 513 (591)
|+...|-+.-.+.-++.|.+.+-
T Consensus 221 gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 221 GDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred ccHHHHHHHHHHHHHhCCCcHHH
Confidence 88888888777777888876653
No 72
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.48 E-value=3.5e-13 Score=133.55 Aligned_cols=157 Identities=16% Similarity=0.138 Sum_probs=124.3
Q ss_pred HHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhhchHhHHH
Q 007721 353 FPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLV 431 (591)
Q Consensus 353 ~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~-~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~~~~~~~ 431 (591)
+-..+-|+=+++.++|++|+..|++||+++|. +-.|.+|+.+|.++|.++.|+.|++.||.+||.|
T Consensus 82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~y------------- 148 (304)
T KOG0553|consen 82 ESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHY------------- 148 (304)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHH-------------
Confidence 34478899999999999999999999999995 6666789999999999999999999999999987
Q ss_pred HHHHhhhcccCchhhhhhhhhccccccccchHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchH
Q 007721 432 KLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEH 511 (591)
Q Consensus 432 ~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~ 511 (591)
..+|-++|.++.-+|++++|++.|++||+++|++.
T Consensus 149 ---------------------------------------------skay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne 183 (304)
T KOG0553|consen 149 ---------------------------------------------SKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNE 183 (304)
T ss_pred ---------------------------------------------HHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcH
Confidence 35677899999999999999999999999999999
Q ss_pred HHHHhHHHHHHHcCCHH---HHHHHHHHhhcc-c-ccHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHhc
Q 007721 512 ERLVYEGWILYDTGHRE---EALSRAEKSISI-E-RTFEAFFLKAYILADTNLDPESSTYVIQLLEEALR 576 (591)
Q Consensus 512 ~a~~~~G~~l~~~g~~e---eAl~~~e~ai~l-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (591)
..--+++|+-..++.-. .+....+=+-.+ . |.+-.-|. .+|. +=.-|+++.....+
T Consensus 184 ~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~~s~~~-------~~l~--nnp~l~~~~~~m~~ 244 (304)
T KOG0553|consen 184 SYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDSRSMFN-------GDLM--NNPQLMQLASQMMK 244 (304)
T ss_pred HHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccchhhhc-------cccc--cCHHHHHHHHHHhh
Confidence 88888888888877666 555555544444 2 56663333 2222 23456666666666
No 73
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.46 E-value=1.5e-12 Score=129.36 Aligned_cols=225 Identities=14% Similarity=0.099 Sum_probs=190.2
Q ss_pred hhHHHHHHhCChHHHHHHHHHHHHhcCCC------HHHHHHHHhcCCcHHHHHHHHHHHHcCCCChHHHHhHHHHHHHhC
Q 007721 293 GLARAKYKVGQQYSAYKLINSIISEHKPT------GWMYQERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEG 366 (591)
Q Consensus 293 ~la~~~~~~G~~~~A~~~~~~aI~~~~~~------g~a~~~r~~y~~~~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~ 366 (591)
.+|++++.+|-+.+|...+.+.++..|-. +.+|+.. .....|+..|...++--|.+.-.....|-++..++
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ri---dQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRI---DQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHh---ccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH
Confidence 48999999999999999999999887642 3333322 22277899999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhhchHhHHHHHHHhhhcccCchh
Q 007721 367 QIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPAD 445 (591)
Q Consensus 367 ~~~eAl~~~~~al~l~p~-~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~ 445 (591)
++++|+..|+++++++|. .++..-.|.-|.--++.+-|++.|++++++.-..++.+.+.+...+ ..+|++.+
T Consensus 305 ~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~------yaqQ~D~~- 377 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCL------YAQQIDLV- 377 (478)
T ss_pred hHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHH------hhcchhhh-
Confidence 999999999999999994 5655445566888899999999999999999887665555554433 33444444
Q ss_pred hhhhhhhccccccccchHHHHHHHHHcCC---CCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHH
Q 007721 446 CWIKLYDRWSSVDDIGSLAVINQMLINDP---GKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILY 522 (591)
Q Consensus 446 ~~~~l~~~~~~~~~~~al~~~~~al~~~P---~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~ 522 (591)
|.+|.||++..- ..++.|+|+|.+..-.|++--|.++++.|+-.+|+++++++|+|.+--
T Consensus 378 -----------------L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~ 440 (478)
T KOG1129|consen 378 -----------------LPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAA 440 (478)
T ss_pred -----------------HHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHh
Confidence 889999998754 456889999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHhhcccccH
Q 007721 523 DTGHREEALSRAEKSISIERTF 544 (591)
Q Consensus 523 ~~g~~eeAl~~~e~ai~l~~~~ 544 (591)
..|+.++|-+.+.-|-++.|.-
T Consensus 441 r~G~i~~Arsll~~A~s~~P~m 462 (478)
T KOG1129|consen 441 RSGDILGARSLLNAAKSVMPDM 462 (478)
T ss_pred hcCchHHHHHHHHHhhhhCccc
Confidence 9999999999999999999864
No 74
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.46 E-value=1.2e-11 Score=136.98 Aligned_cols=256 Identities=18% Similarity=0.107 Sum_probs=188.6
Q ss_pred hhhhhHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHhc----CCcHHHHHHHHHHHHcCCCChHHHHhHHHHHHHh
Q 007721 290 SLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLY----NLGREKIVDLNYASELDPTLSFPYKYRAVAKMEE 365 (591)
Q Consensus 290 a~~~la~~~~~~G~~~~A~~~~~~aI~~~~~~g~a~~~r~~y----~~~~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l 365 (591)
...+.|+..+..|+.++|...+..+|...|.+..+|+..|.. |..++++...-.|--|+|.+.+-|..++....++
T Consensus 141 ~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~ 220 (895)
T KOG2076|consen 141 QLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQL 220 (895)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhc
Confidence 344567778889999999999999999999877666666542 2337888888899999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC----cchh---------hhhhch----H
Q 007721 366 GQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALES----NYMM---------FHGRVS----G 427 (591)
Q Consensus 366 ~~~~eAl~~~~~al~l~p~-~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P----~~~~---------~~~~~~----~ 427 (591)
|++++|.-+|+|||+.+|. .+..+.|..+|.++|++..|+.-|.+++.++| .-.+ |+.... +
T Consensus 221 ~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~ 300 (895)
T KOG2076|consen 221 GNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAA 300 (895)
T ss_pred ccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 9999999999999999995 67778899999999999999999999999999 1111 111100 1
Q ss_pred hH------------------HHHHHHhhhcccCchhhhhhhhhc----------------------cccc----------
Q 007721 428 DH------------------LVKLLNHHVRSWSPADCWIKLYDR----------------------WSSV---------- 457 (591)
Q Consensus 428 ~~------------------~~~~l~~~~~~~~~a~~~~~l~~~----------------------~~~~---------- 457 (591)
.. ....+.-...+|+.|.-.+.-.-. .-.+
T Consensus 301 ~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v 380 (895)
T KOG2076|consen 301 KALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV 380 (895)
T ss_pred HHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh
Confidence 11 111122222333333221111111 0000
Q ss_pred ----------cccchHHHHHHHHHcC----CCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCch-HHHHHhHHHHHH
Q 007721 458 ----------DDIGSLAVINQMLIND----PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE-HERLVYEGWILY 522 (591)
Q Consensus 458 ----------~~~~al~~~~~al~~~----P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~-~~a~~~~G~~l~ 522 (591)
+.-..+.++..-+..+ -..+++++..+.+|...|++.+|++.+..++...+.+ +..++..|-|+.
T Consensus 381 ~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~ 460 (895)
T KOG2076|consen 381 IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYM 460 (895)
T ss_pred HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHH
Confidence 1111112222222221 2457789999999999999999999999999998875 567788999999
Q ss_pred HcCCHHHHHHHHHHhhcccccHH
Q 007721 523 DTGHREEALSRAEKSISIERTFE 545 (591)
Q Consensus 523 ~~g~~eeAl~~~e~ai~l~~~~~ 545 (591)
.+|++++|++.|++++.++|+.-
T Consensus 461 ~l~e~e~A~e~y~kvl~~~p~~~ 483 (895)
T KOG2076|consen 461 ELGEYEEAIEFYEKVLILAPDNL 483 (895)
T ss_pred HHhhHHHHHHHHHHHHhcCCCch
Confidence 99999999999999999999876
No 75
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.46 E-value=9.2e-13 Score=127.85 Aligned_cols=59 Identities=8% Similarity=0.018 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCC-hHHHHHHHH
Q 007721 335 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAW 393 (591)
Q Consensus 335 ~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~-~~~~~~r~~ 393 (591)
++++..+.++++.+|+++.+|..+|.+++.+|++++|+..|++|++++|+ ++.+...|.
T Consensus 56 ~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~ 115 (198)
T PRK10370 56 EAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALAT 115 (198)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 45555555555555555555555555555555555555555555555553 444444444
No 76
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.45 E-value=4.3e-12 Score=133.93 Aligned_cols=175 Identities=16% Similarity=0.007 Sum_probs=118.1
Q ss_pred cCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCC-C---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhh
Q 007721 347 LDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-S---VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFH 422 (591)
Q Consensus 347 LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p-~---~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~ 422 (591)
.||+++.+|..+|..+...|+.++|...+.++.+..| + .+..+.++.++...|++++|+..++++++.+|++....
T Consensus 1 ~dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~ 80 (355)
T cd05804 1 ADPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLAL 80 (355)
T ss_pred CCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHH
Confidence 3899999999999999999999999999999998887 3 24567788899999999999999999999999885321
Q ss_pred hhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccchHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHH
Q 007721 423 GRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRL 502 (591)
Q Consensus 423 ~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~ 502 (591)
....... .++......+. +...+......+|....++..+|.++..+|++++|++.+++
T Consensus 81 ~~~~~~~-------------------~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 139 (355)
T cd05804 81 KLHLGAF-------------------GLGDFSGMRDH--VARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARR 139 (355)
T ss_pred HHhHHHH-------------------HhcccccCchh--HHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1100000 00000000000 12222223345555556666666677777777777777777
Q ss_pred HHhcCCchHHHHHhHHHHHHHcCCHHHHHHHHHHhhcccc
Q 007721 503 ARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIER 542 (591)
Q Consensus 503 Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l~~ 542 (591)
+++++|+++.++..+|.+++..|++++|++.+++++.+.|
T Consensus 140 al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~ 179 (355)
T cd05804 140 ALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWD 179 (355)
T ss_pred HHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC
Confidence 7777777766667777777777777777777777766654
No 77
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.43 E-value=1.5e-10 Score=124.70 Aligned_cols=252 Identities=13% Similarity=-0.018 Sum_probs=184.2
Q ss_pred HhhhHHhhhccHHHHHHHHHHHhhccccc--hhh-hhHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHhc----CC
Q 007721 261 QLGCVMFEREEYKDACYYFEAAADAGHIY--SLA-GLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLY----NL 333 (591)
Q Consensus 261 ~lG~~~~~~g~~~eA~~~f~~Al~~~~~~--a~~-~la~~~~~~G~~~~A~~~~~~aI~~~~~~g~a~~~r~~y----~~ 333 (591)
..+......|++++|..+|.+|.+..+.. +.. -.++++...|+++.|...+++..+..|++.+++.-.... +.
T Consensus 123 laA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gd 202 (398)
T PRK10747 123 LAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGA 202 (398)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh
Confidence 33555588999999999999999885543 222 237789999999999999999999999987766554321 22
Q ss_pred cHHHHHHHHHHHHcCCCChHHHH-hHHHH-------HHHhCCHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHcCCHHHH
Q 007721 334 GREKIVDLNYASELDPTLSFPYK-YRAVA-------KMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESA 404 (591)
Q Consensus 334 ~~eA~~dl~~Ai~LdP~~~~ay~-~rg~~-------l~~l~~~~eAl~~~~~al~l~p-~~~~~~~r~~~~~~~g~~~~A 404 (591)
.++|+..+++..+..+..+.... .++.+ ......-+...+.++..-+-.| ++......+..+...|+.++|
T Consensus 203 w~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A 282 (398)
T PRK10747 203 WSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTA 282 (398)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHH
Confidence 27888888888877776544333 11122 1122222233333333222234 366667788899999999999
Q ss_pred HHHHHHHHhcCCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccchHHHHHHHHHcCCCCchhHhhhH
Q 007721 405 LRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQS 484 (591)
Q Consensus 405 ~~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~~P~~~~~~~~~g 484 (591)
...++++++..|+.. .. .+|-....-+...++..+++.+..+|+++++++..|
T Consensus 283 ~~~L~~~l~~~~~~~-------l~--------------------~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lg 335 (398)
T PRK10747 283 QQIILDGLKRQYDER-------LV--------------------LLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLG 335 (398)
T ss_pred HHHHHHHHhcCCCHH-------HH--------------------HHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 999999999666531 11 111111111222258899999999999999999999
Q ss_pred HHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHHHHHHHHhhcc
Q 007721 485 LLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISI 540 (591)
Q Consensus 485 ~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l 540 (591)
.++.+.+++++|.+.++++++.+|++.. +..++.++-.+|+.++|.+.|++++.+
T Consensus 336 rl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 336 QLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999999999999999999999764 668999999999999999999999875
No 78
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.43 E-value=5e-12 Score=122.69 Aligned_cols=123 Identities=13% Similarity=0.083 Sum_probs=99.8
Q ss_pred hCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhhchHhHHHHHHHhhhcccCc
Q 007721 365 EGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSP 443 (591)
Q Consensus 365 l~~~~eAl~~~~~al~l~p~-~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~ 443 (591)
.++.++++..++++++.+|+ .+.|..+|.++..+|++++|+..|+++++++|++
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~------------------------- 106 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGEN------------------------- 106 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-------------------------
Confidence 77889999999999999995 8889999999999999999999999999999987
Q ss_pred hhhhhhhhhccccccccchHHHHHHHHHcCCCCchhHhhhHHHH-HHhCC--HHHHHHHHHHHHhcCCchHHHHHhHHHH
Q 007721 444 ADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLL-LRLNC--QKAAMRCLRLARNHSSSEHERLVYEGWI 520 (591)
Q Consensus 444 a~~~~~l~~~~~~~~~~~al~~~~~al~~~P~~~~~~~~~g~~l-~~l~~--~~eA~~~~~~Al~l~p~~~~a~~~~G~~ 520 (591)
+.++++.|.++ ...|+ .++|++.+++|++++|++.+++.++|.+
T Consensus 107 ---------------------------------~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~ 153 (198)
T PRK10370 107 ---------------------------------AELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASD 153 (198)
T ss_pred ---------------------------------HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHH
Confidence 24455566654 45565 4777777777777777777777777777
Q ss_pred HHHcCCHHHHHHHHHHhhcccccHH
Q 007721 521 LYDTGHREEALSRAEKSISIERTFE 545 (591)
Q Consensus 521 l~~~g~~eeAl~~~e~ai~l~~~~~ 545 (591)
++.+|++++|++.|++++++.|...
T Consensus 154 ~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 154 AFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 7777777777777777777766644
No 79
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.41 E-value=9.9e-13 Score=130.37 Aligned_cols=99 Identities=13% Similarity=0.128 Sum_probs=91.9
Q ss_pred hhhhccccccccc-hHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCH
Q 007721 449 KLYDRWSSVDDIG-SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHR 527 (591)
Q Consensus 449 ~l~~~~~~~~~~~-al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~ 527 (591)
.-+.......+|. |+..|++||+++|.++.+|-||+-++.+||.++.|+.+.+.|+.++|++..+|--+|.+++.+|++
T Consensus 86 ~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 86 NEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcH
Confidence 3444455557777 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcccccHHHH
Q 007721 528 EEALSRAEKSISIERTFEAF 547 (591)
Q Consensus 528 eeAl~~~e~ai~l~~~~~~~ 547 (591)
++|++.|.||+.|+|+.+.|
T Consensus 166 ~~A~~aykKaLeldP~Ne~~ 185 (304)
T KOG0553|consen 166 EEAIEAYKKALELDPDNESY 185 (304)
T ss_pred HHHHHHHHhhhccCCCcHHH
Confidence 99999999999999999954
No 80
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.41 E-value=4.1e-12 Score=114.97 Aligned_cols=118 Identities=15% Similarity=0.124 Sum_probs=89.4
Q ss_pred HHHHHHHhcCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhh
Q 007721 373 SEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLY 451 (591)
Q Consensus 373 ~~~~~al~l~p~-~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~ 451 (591)
+.++++++++|+ ....+.+|..+...|++++|+..|+++++++|++
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~--------------------------------- 50 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYN--------------------------------- 50 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc---------------------------------
Confidence 346667777774 4555666777777777777766666655555543
Q ss_pred hccccccccchHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHHH
Q 007721 452 DRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEAL 531 (591)
Q Consensus 452 ~~~~~~~~~~al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl 531 (591)
+.+|+++|.++.++|++++|...++++++++|++++.++++|++++..|++++|+
T Consensus 51 -------------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~ 105 (135)
T TIGR02552 51 -------------------------SRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESAL 105 (135)
T ss_pred -------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHH
Confidence 4667778888888888888888888888888888888888888888888888888
Q ss_pred HHHHHhhcccccHHHHH
Q 007721 532 SRAEKSISIERTFEAFF 548 (591)
Q Consensus 532 ~~~e~ai~l~~~~~~~~ 548 (591)
+.++++++++|+...|.
T Consensus 106 ~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 106 KALDLAIEICGENPEYS 122 (135)
T ss_pred HHHHHHHHhccccchHH
Confidence 88888888888777543
No 81
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.39 E-value=1e-11 Score=123.46 Aligned_cols=166 Identities=14% Similarity=0.052 Sum_probs=124.6
Q ss_pred HHHHHHHHHHHHcCCCCh---HHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCC-hH---HHHHHHHHHHHc--------C
Q 007721 335 REKIVDLNYASELDPTLS---FPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VD---CLELRAWLFIAA--------D 399 (591)
Q Consensus 335 ~eA~~dl~~Ai~LdP~~~---~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~-~~---~~~~r~~~~~~~--------g 399 (591)
++|+..|++++..+|+++ .++..+|.++..+|++++|+..|+++++..|+ +. +++.+|.++..+ |
T Consensus 50 ~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~ 129 (235)
T TIGR03302 50 TEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQT 129 (235)
T ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHH
Confidence 667777788888888765 68899999999999999999999999999995 43 578889988876 8
Q ss_pred CHHHHHHHHHHHHhcCCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccc-hHHHHHHHHHcCCCC--
Q 007721 400 DYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIG-SLAVINQMLINDPGK-- 476 (591)
Q Consensus 400 ~~~~A~~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~-al~~~~~al~~~P~~-- 476 (591)
++++|+..|+++++.+|+...+. .+......+..... .....+.+.+...+++. |+..+.+++...|+.
T Consensus 130 ~~~~A~~~~~~~~~~~p~~~~~~---~a~~~~~~~~~~~~-----~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 201 (235)
T TIGR03302 130 AAREAFEAFQELIRRYPNSEYAP---DAKKRMDYLRNRLA-----GKELYVARFYLKRGAYVAAINRFETVVENYPDTPA 201 (235)
T ss_pred HHHHHHHHHHHHHHHCCCChhHH---HHHHHHHHHHHHHH-----HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcc
Confidence 99999999999999999974321 11111111111111 11122333344446666 788999999997765
Q ss_pred -chhHhhhHHHHHHhCCHHHHHHHHHHHHhcCC
Q 007721 477 -SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSS 508 (591)
Q Consensus 477 -~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p 508 (591)
+++++++|.++..+|++++|...++......|
T Consensus 202 ~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 202 TEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 58999999999999999999998877766554
No 82
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.39 E-value=7.6e-11 Score=128.84 Aligned_cols=283 Identities=18% Similarity=0.074 Sum_probs=217.0
Q ss_pred chhHHHHHHHHhhcchhhhHHHHHHHHhhhHHhhhccHHHHHHHHHHHhhcc---ccchhhhhHHHHHHhCChHHHHHHH
Q 007721 235 SNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAG---HIYSLAGLARAKYKVGQQYSAYKLI 311 (591)
Q Consensus 235 ~~~~v~lLe~~~~~~~~~~~~~~a~~~lG~~~~~~g~~~eA~~~f~~Al~~~---~~~a~~~la~~~~~~G~~~~A~~~~ 311 (591)
...+++.+++++.+.+.+ ..+.|+++.-+..+++.+.|....+++++.+ +..++..++.+....+++.+|+...
T Consensus 460 h~kslqale~av~~d~~d---p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vv 536 (799)
T KOG4162|consen 460 HKKSLQALEEAVQFDPTD---PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVV 536 (799)
T ss_pred HHHHHHHHHHHHhcCCCC---chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 335788899988887765 4778899999999999999999999999983 4558889999999999999999999
Q ss_pred HHHHHhcCC-CHHH----HHHHHhcCCcHHHHHHHHHHHHcCCCChHHH---------HhHHHHHHHhCCHHHHHHHHHH
Q 007721 312 NSIISEHKP-TGWM----YQERSLYNLGREKIVDLNYASELDPTLSFPY---------KYRAVAKMEEGQIRAAISEIDR 377 (591)
Q Consensus 312 ~~aI~~~~~-~g~a----~~~r~~y~~~~eA~~dl~~Ai~LdP~~~~ay---------~~rg~~l~~l~~~~eAl~~~~~ 377 (591)
+.++.-.+. ++.| +.+.. +++.++++......+.+--+...+. ...+...+.+.+..+|+..+++
T Consensus 537 d~al~E~~~N~~l~~~~~~i~~~-~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ 615 (799)
T KOG4162|consen 537 DAALEEFGDNHVLMDGKIHIELT-FNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRY 615 (799)
T ss_pred HHHHHHhhhhhhhchhhhhhhhh-cccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHH
Confidence 999988764 3333 32221 3333556555555444433221111 1122223333455555555555
Q ss_pred HHhc--------C-----------CCh--------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhhchHhHH
Q 007721 378 IIVF--------K-----------LSV--------DCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHL 430 (591)
Q Consensus 378 al~l--------~-----------p~~--------~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~~~~~~ 430 (591)
+..+ + |.+ ..|...+..+...+.-++|..+...|-.++|-- ...+++
T Consensus 616 ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~------~~~~~~ 689 (799)
T KOG4162|consen 616 LSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLS------ASVYYL 689 (799)
T ss_pred HHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhh------HHHHHH
Confidence 5433 1 211 123456678889999999999999999999865 557788
Q ss_pred HHHHHhhhcccCchhhhhhhhhccccccccchHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHH--HHHHHHhcCC
Q 007721 431 VKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMR--CLRLARNHSS 508 (591)
Q Consensus 431 ~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~--~~~~Al~l~p 508 (591)
.+.+....+++.+| ...|.-|+.+||+++..-..+|.++...|++.=|.. .++.|++++|
T Consensus 690 ~G~~~~~~~~~~EA------------------~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp 751 (799)
T KOG4162|consen 690 RGLLLEVKGQLEEA------------------KEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP 751 (799)
T ss_pred hhHHHHHHHhhHHH------------------HHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC
Confidence 88888888888888 788999999999999999999999999999988887 9999999999
Q ss_pred chHHHHHhHHHHHHHcCCHHHHHHHHHHhhcccccHH
Q 007721 509 SEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE 545 (591)
Q Consensus 509 ~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l~~~~~ 545 (591)
.+++|++++|-++-.+|+.++|..+|.-|+.+.+|..
T Consensus 752 ~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 752 LNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 9999999999999999999999999999999998864
No 83
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.34 E-value=4.4e-11 Score=135.55 Aligned_cols=124 Identities=15% Similarity=-0.034 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007721 335 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLA 413 (591)
Q Consensus 335 ~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~-~~~~~~r~~~~~~~g~~~~A~~d~~~al~ 413 (591)
++|...++++++++|++..+..++|.++.+++++++|+..+++++..+|+ +..++.+|.++.++|++++|+..|+++++
T Consensus 103 ~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~ 182 (694)
T PRK15179 103 DEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSR 182 (694)
T ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence 88899999999999999999999999999999999999999999999996 78888999999999999999999999888
Q ss_pred cCCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccchHHHHHHHHHcCCCCchhHhhhHHHHHHhCCH
Q 007721 414 LESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQ 493 (591)
Q Consensus 414 l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~ 493 (591)
.+|++ +.++.++|.+|..+|+.
T Consensus 183 ~~p~~----------------------------------------------------------~~~~~~~a~~l~~~G~~ 204 (694)
T PRK15179 183 QHPEF----------------------------------------------------------ENGYVGWAQSLTRRGAL 204 (694)
T ss_pred cCCCc----------------------------------------------------------HHHHHHHHHHHHHcCCH
Confidence 66654 56788899999999999
Q ss_pred HHHHHHHHHHHhcCCchHHHHHh
Q 007721 494 KAAMRCLRLARNHSSSEHERLVY 516 (591)
Q Consensus 494 ~eA~~~~~~Al~l~p~~~~a~~~ 516 (591)
++|...|++|+++..+-+-.+.+
T Consensus 205 ~~A~~~~~~a~~~~~~~~~~~~~ 227 (694)
T PRK15179 205 WRARDVLQAGLDAIGDGARKLTR 227 (694)
T ss_pred HHHHHHHHHHHHhhCcchHHHHH
Confidence 99999999999999887766443
No 84
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.34 E-value=2e-11 Score=110.46 Aligned_cols=117 Identities=18% Similarity=0.101 Sum_probs=104.6
Q ss_pred HHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Q 007721 339 VDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESN 417 (591)
Q Consensus 339 ~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~-~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~ 417 (591)
+.|.++++++|+++.+...+|..+...|++++|+..+++++.++|+ +..+..+|.++..+|++++|+..|+++++++|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4578999999999999999999999999999999999999999995 788888999999999999999888777777765
Q ss_pred chhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccchHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHH
Q 007721 418 YMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAM 497 (591)
Q Consensus 418 ~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~ 497 (591)
+ +..++++|.++..+|++++|+
T Consensus 84 ~----------------------------------------------------------~~~~~~la~~~~~~g~~~~A~ 105 (135)
T TIGR02552 84 D----------------------------------------------------------PRPYFHAAECLLALGEPESAL 105 (135)
T ss_pred C----------------------------------------------------------hHHHHHHHHHHHHcCCHHHHH
Confidence 4 567788999999999999999
Q ss_pred HHHHHHHhcCCchHHH
Q 007721 498 RCLRLARNHSSSEHER 513 (591)
Q Consensus 498 ~~~~~Al~l~p~~~~a 513 (591)
..++++++++|++...
T Consensus 106 ~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 106 KALDLAIEICGENPEY 121 (135)
T ss_pred HHHHHHHHhccccchH
Confidence 9999999999988763
No 85
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.32 E-value=1.4e-10 Score=129.28 Aligned_cols=310 Identities=15% Similarity=0.073 Sum_probs=215.2
Q ss_pred HHHHHHHhhcchhhhHHHHHHHHhhhHHhhhccHHHHHHHHHHHhhccccc--hhhhhHHHHHHhCChHHHHHHHHHHHH
Q 007721 239 VMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIY--SLAGLARAKYKVGQQYSAYKLINSIIS 316 (591)
Q Consensus 239 v~lLe~~~~~~~~~~~~~~a~~~lG~~~~~~g~~~eA~~~f~~Al~~~~~~--a~~~la~~~~~~G~~~~A~~~~~~aI~ 316 (591)
...|-+..+..+. .+.+|.-+|..|.+--+...|..||++|.++++++ +..+.+..+.....++.|..-..++-+
T Consensus 478 l~ali~alrld~~---~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~q 554 (1238)
T KOG1127|consen 478 LHALIRALRLDVS---LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQ 554 (1238)
T ss_pred HHHHHHHHhcccc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhh
Confidence 3344344444332 36688899999999889999999999999997654 555667788888888888777655555
Q ss_pred hcCC--CHHHHHHHHhcCCc----HHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCC-hHHHH
Q 007721 317 EHKP--TGWMYQERSLYNLG----REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLE 389 (591)
Q Consensus 317 ~~~~--~g~a~~~r~~y~~~----~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~-~~~~~ 389 (591)
..|. .-+.+..||.|... .+|+.+|+.|++.||.+...|..+|.+|.+-|++.-|+..|+||..++|. ...-+
T Consensus 555 ka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~f 634 (1238)
T KOG1127|consen 555 KAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRF 634 (1238)
T ss_pred hchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHH
Confidence 4442 23444457765322 78999999999999999999999999999999999999999999999996 33345
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhh-------hhch------------Hh-----------HHHHHHHhhhc
Q 007721 390 LRAWLFIAADDYESALRDTLALLALESNYMMFH-------GRVS------------GD-----------HLVKLLNHHVR 439 (591)
Q Consensus 390 ~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~-------~~~~------------~~-----------~~~~~l~~~~~ 439 (591)
--+.....+|.|++|+.-+..++.-..++..+. .|.+ +. .+...+.....
T Consensus 635 k~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~ 714 (1238)
T KOG1127|consen 635 KEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRL 714 (1238)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHH
Confidence 567788999999999999888877555443211 1111 00 00000000011
Q ss_pred cc--------------------------------------------------------Cchhhhhhhhhccccc------
Q 007721 440 SW--------------------------------------------------------SPADCWIKLYDRWSSV------ 457 (591)
Q Consensus 440 ~~--------------------------------------------------------~~a~~~~~l~~~~~~~------ 457 (591)
+| ..+-.|.+++-.+-++
T Consensus 715 ~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~e 794 (1238)
T KOG1127|consen 715 QWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGE 794 (1238)
T ss_pred HHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCC
Confidence 11 1112222222222221
Q ss_pred --ccc-chHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHHHHHH
Q 007721 458 --DDI-GSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRA 534 (591)
Q Consensus 458 --~~~-~al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~~ 534 (591)
++. .|+-++-+++.++.++-.+|+.+|.+ ...|.+.-|.-+|-+++.++|.++-.+.|+|.+.....+++-|-+.+
T Consensus 795 t~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af 873 (1238)
T KOG1127|consen 795 TMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAF 873 (1238)
T ss_pred cchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHH
Confidence 222 25667778888888888888888877 55577777888888888888888888888888888888888888888
Q ss_pred HHhhcccccHH-HHHHHHH
Q 007721 535 EKSISIERTFE-AFFLKAY 552 (591)
Q Consensus 535 e~ai~l~~~~~-~~~~~~~ 552 (591)
.++++|+|++- +..-+|+
T Consensus 874 ~~~qSLdP~nl~~WlG~Al 892 (1238)
T KOG1127|consen 874 SSVQSLDPLNLVQWLGEAL 892 (1238)
T ss_pred HhhhhcCchhhHHHHHHHH
Confidence 88888888776 4444444
No 86
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.30 E-value=1.7e-10 Score=125.26 Aligned_cols=233 Identities=15% Similarity=0.089 Sum_probs=165.4
Q ss_pred HHHHHHHhhhHHhhhccHHHHHHHHHHHhhc-------ccc--chhh-hhHHHHHHhCChHHHHHHHHHHHHhc------
Q 007721 255 RMLALHQLGCVMFEREEYKDACYYFEAAADA-------GHI--YSLA-GLARAKYKVGQQYSAYKLINSIISEH------ 318 (591)
Q Consensus 255 ~~~a~~~lG~~~~~~g~~~eA~~~f~~Al~~-------~~~--~a~~-~la~~~~~~G~~~~A~~~~~~aI~~~------ 318 (591)
......+++..+..+|+|+.|+..|..|+.+ .|. .... .+|.++..++++.+|+..|.+++...
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 3456777999999999999999999999988 332 2333 38889999999999999999987753
Q ss_pred --CC-------CHHHHHHHHhcCCcHHHHHHHHHHHHc--------CCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhc
Q 007721 319 --KP-------TGWMYQERSLYNLGREKIVDLNYASEL--------DPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVF 381 (591)
Q Consensus 319 --~~-------~g~a~~~r~~y~~~~eA~~dl~~Ai~L--------dP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l 381 (591)
|. ++.+|..+|.+ .+|...+++|+++ .|..+..+.+.+.++..++++++|+..+++++++
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf---~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i 354 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKF---AEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI 354 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCCh---HHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 22 33444444333 6777666666654 3445667777888888888888888888888876
Q ss_pred C---C-----C-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhh
Q 007721 382 K---L-----S-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYD 452 (591)
Q Consensus 382 ~---p-----~-~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~ 452 (591)
- | . +....+.|.+|..+|+|++|...|++|+++.-..- |
T Consensus 355 ~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~---~----------------------------- 402 (508)
T KOG1840|consen 355 YLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELL---G----------------------------- 402 (508)
T ss_pred HHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcc---c-----------------------------
Confidence 2 2 1 12244577888888888888888888887664210 0
Q ss_pred ccccccccchHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcC-------CchHHHHHhHHHHHHHcC
Q 007721 453 RWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHS-------SSEHERLVYEGWILYDTG 525 (591)
Q Consensus 453 ~~~~~~~~~al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~-------p~~~~a~~~~G~~l~~~g 525 (591)
..++.......++|....+++++++|-..|.+++.+. |+-...+-|+|-+|-.+|
T Consensus 403 ------------------~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g 464 (508)
T KOG1840|consen 403 ------------------KKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQG 464 (508)
T ss_pred ------------------CcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcc
Confidence 0123334456667777778888887877777777653 445667778888888888
Q ss_pred CHHHHHHHHHHhhcc
Q 007721 526 HREEALSRAEKSISI 540 (591)
Q Consensus 526 ~~eeAl~~~e~ai~l 540 (591)
++|+|++..++++..
T Consensus 465 ~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 465 NYEAAEELEEKVLNA 479 (508)
T ss_pred cHHHHHHHHHHHHHH
Confidence 888888888877743
No 87
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.26 E-value=5.7e-09 Score=104.32 Aligned_cols=277 Identities=16% Similarity=0.132 Sum_probs=195.6
Q ss_pred chhHHHHHHHHhhcchhhhHHHHHHHHhhhHHhhhccHHHHHHHHHHHhhccc------cchhhhhHHHHHHhCChHHHH
Q 007721 235 SNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGH------IYSLAGLARAKYKVGQQYSAY 308 (591)
Q Consensus 235 ~~~~v~lLe~~~~~~~~~~~~~~a~~~lG~~~~~~g~~~eA~~~f~~Al~~~~------~~a~~~la~~~~~~G~~~~A~ 308 (591)
++.++.+|-..++..+. ...+..-||..+-.+|+.+.|+...+..++.+. ..+...+|+-+...|-++.|.
T Consensus 51 ~dKAvdlF~e~l~~d~~---t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 51 PDKAVDLFLEMLQEDPE---TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred cchHHHHHHHHHhcCch---hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 55677777666654443 244556688888888888888887765555421 235566777777777777777
Q ss_pred HHHHHHHHhcCC-------CHHHHHHHHhcCCcHHHHHHHHHHHHcCCCC-----hHHHHhHHHHHHHhCCHHHHHHHHH
Q 007721 309 KLINSIISEHKP-------TGWMYQERSLYNLGREKIVDLNYASELDPTL-----SFPYKYRAVAKMEEGQIRAAISEID 376 (591)
Q Consensus 309 ~~~~~aI~~~~~-------~g~a~~~r~~y~~~~eA~~dl~~Ai~LdP~~-----~~ay~~rg~~l~~l~~~~eAl~~~~ 376 (591)
..|...+....- +-.+|+.-..+ ++|+..-++..++.|.. +..|..+|..++...+++.|+.-+.
T Consensus 128 ~~f~~L~de~efa~~AlqqLl~IYQ~treW---~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 128 DIFNQLVDEGEFAEGALQQLLNIYQATREW---EKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHhcchhhhHHHHHHHHHHHHHhhHH---HHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 777766653211 23334444344 67777777777777765 5677778888888888888888888
Q ss_pred HHHhcCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccc
Q 007721 377 RIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWS 455 (591)
Q Consensus 377 ~al~l~p~-~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~ 455 (591)
||++-+|+ ..+-..+|.+....|+|++|++.++++++-||+|.
T Consensus 205 kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl------------------------------------ 248 (389)
T COG2956 205 KALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYL------------------------------------ 248 (389)
T ss_pred HHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHH------------------------------------
Confidence 88888886 56666788888888888888888888888888872
Q ss_pred cccccchHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHHHHHHH
Q 007721 456 SVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAE 535 (591)
Q Consensus 456 ~~~~~~al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~~e 535 (591)
++....+..++..+|++++.+..++++.+..+... +...+........-.++|-+...
T Consensus 249 ---------------------~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~-~~l~l~~lie~~~G~~~Aq~~l~ 306 (389)
T COG2956 249 ---------------------SEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD-AELMLADLIELQEGIDAAQAYLT 306 (389)
T ss_pred ---------------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc-HHHHHHHHHHHhhChHHHHHHHH
Confidence 12223356688999999999999999999999854 55555555555566788888999
Q ss_pred HhhcccccHH-HHHHHHHHhhhcCC-CCCchhHHH-HHHHHHh
Q 007721 536 KSISIERTFE-AFFLKAYILADTNL-DPESSTYVI-QLLEEAL 575 (591)
Q Consensus 536 ~ai~l~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~ 575 (591)
+=+..+|+.- -+.+-.|-++|-+= -+..|..++ .++-+-+
T Consensus 307 ~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l 349 (389)
T COG2956 307 RQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQL 349 (389)
T ss_pred HHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHH
Confidence 9999999998 56788999998764 233444433 3444443
No 88
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.25 E-value=2.1e-10 Score=127.80 Aligned_cols=182 Identities=14% Similarity=0.139 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007721 335 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLA 413 (591)
Q Consensus 335 ~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~-~~~~~~r~~~~~~~g~~~~A~~d~~~al~ 413 (591)
..|+..|-+++++||+++.+|..+|.+|.+-.+..-|-.+|++|.++||. ..++...+-.+....++++|..-.-++-+
T Consensus 475 ~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~q 554 (1238)
T KOG1127|consen 475 ALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQ 554 (1238)
T ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhh
Confidence 44555555555555555555555555555555555555555555555552 44444455555555555555555555555
Q ss_pred cCCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhcccccccc-chHHHHHHHHHcCCCCchhHhhhHHHHHHhCC
Q 007721 414 LESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDI-GSLAVINQMLINDPGKSFLRFRQSLLLLRLNC 492 (591)
Q Consensus 414 l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~-~al~~~~~al~~~P~~~~~~~~~g~~l~~l~~ 492 (591)
.+|... +. ..|.+++...-..... +++..++-||..+|++..+|..+|.++..-|+
T Consensus 555 ka~a~~----~k-------------------~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGr 611 (1238)
T KOG1127|consen 555 KAPAFA----CK-------------------ENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGR 611 (1238)
T ss_pred hchHHH----HH-------------------hhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCc
Confidence 555331 00 1111211111111111 13555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHHHHHHHHhhc
Q 007721 493 QKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSIS 539 (591)
Q Consensus 493 ~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~ 539 (591)
+..|+..+++|..++|.+..+.+..+....+.|.|.||+..++..|.
T Consensus 612 y~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 612 YSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred eehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555554443
No 89
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.24 E-value=1.8e-10 Score=125.36 Aligned_cols=147 Identities=13% Similarity=0.050 Sum_probs=92.7
Q ss_pred hhhHHhhhccHHHHHHHHHHHhhccccchhhhhHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHhcCCcHHHHHHH
Q 007721 262 LGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKIVDL 341 (591)
Q Consensus 262 lG~~~~~~g~~~eA~~~f~~Al~~~~~~a~~~la~~~~~~G~~~~A~~~~~~aI~~~~~~g~a~~~r~~y~~~~eA~~dl 341 (591)
++..+..+|=..+|..-|++ .+.+.+..-+|...|+...|-....+-++ .++.+..|.-+|.. -.--+.|
T Consensus 404 laell~slGitksAl~I~Er------lemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv---~~d~s~y 473 (777)
T KOG1128|consen 404 LAELLLSLGITKSALVIFER------LEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDV---LHDPSLY 473 (777)
T ss_pred HHHHHHHcchHHHHHHHHHh------HHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhh---ccChHHH
Confidence 44555555555666655554 23344455566777766666665555666 66666666666543 1122234
Q ss_pred HHHHHcC-CCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc
Q 007721 342 NYASELD-PTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNY 418 (591)
Q Consensus 342 ~~Ai~Ld-P~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p-~~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~ 418 (591)
++|.++- -.++.|.+++|....+.++|++|..++++.++++| ..+.|+.+|.+..++++++.|..+|.+.++++|++
T Consensus 474 EkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~ 552 (777)
T KOG1128|consen 474 EKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDN 552 (777)
T ss_pred HHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCc
Confidence 4444432 22344666777777777778888888888888887 47777778877777888877777777777777776
No 90
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.23 E-value=8.4e-10 Score=119.96 Aligned_cols=208 Identities=14% Similarity=0.051 Sum_probs=166.4
Q ss_pred CHHHHHHHHhcCCcHHHHHHHHHHHHc--------CCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcC--------CC
Q 007721 321 TGWMYQERSLYNLGREKIVDLNYASEL--------DPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFK--------LS 384 (591)
Q Consensus 321 ~g~a~~~r~~y~~~~eA~~dl~~Ai~L--------dP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~--------p~ 384 (591)
++.+|..++.| ++|..-+.+|++. .|..+....+.|.+|+.++++.+|+..|++|+.+- |.
T Consensus 205 La~~y~~~g~~---e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~ 281 (508)
T KOG1840|consen 205 LAEMYAVQGRL---EKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPA 281 (508)
T ss_pred HHHHHHHhccH---HHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHH
Confidence 67778888777 9999999999998 78888888889999999999999999999999882 22
Q ss_pred -hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chhhhhhch-HhHHHHHHHhhhcccCchhhhhhhhhccccccccc
Q 007721 385 -VDCLELRAWLFIAADDYESALRDTLALLALESN-YMMFHGRVS-GDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIG 461 (591)
Q Consensus 385 -~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~-~~~~~~~~~-~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~ 461 (591)
...+.+++.+|...|++++|...+++|+++--. +..-+++++ .......+......+++|. .++..
T Consensus 282 va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~---~l~q~-------- 350 (508)
T KOG1840|consen 282 VAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAK---KLLQK-------- 350 (508)
T ss_pred HHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHH---HHHHH--------
Confidence 234677899999999999999999999997654 111233443 4666777788888888884 22221
Q ss_pred hHHHHHHHHHcC-CCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcC--------CchHHHHHhHHHHHHHcCCHHHHHH
Q 007721 462 SLAVINQMLIND-PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHS--------SSEHERLVYEGWILYDTGHREEALS 532 (591)
Q Consensus 462 al~~~~~al~~~-P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~--------p~~~~a~~~~G~~l~~~g~~eeAl~ 532 (591)
++..+.++..-+ |.-+..+.|+|.++..+|+++||.+.+++|+... +..+-.++++|..+++.+++++|-+
T Consensus 351 al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~ 430 (508)
T KOG1840|consen 351 ALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQ 430 (508)
T ss_pred HHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHH
Confidence 344444444433 3667789999999999999999999999999765 4457789999999999999999999
Q ss_pred HHHHhhcccc
Q 007721 533 RAEKSISIER 542 (591)
Q Consensus 533 ~~e~ai~l~~ 542 (591)
.|++++.|.+
T Consensus 431 l~~~~~~i~~ 440 (508)
T KOG1840|consen 431 LFEEAKDIMK 440 (508)
T ss_pred HHHHHHHHHH
Confidence 9999999854
No 91
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.23 E-value=1.5e-10 Score=127.61 Aligned_cols=152 Identities=11% Similarity=0.034 Sum_probs=113.9
Q ss_pred hcCC-ChHHH--HHHHHHHHHcCC---HHHHHHHHHHHHhcCCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhc
Q 007721 380 VFKL-SVDCL--ELRAWLFIAADD---YESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDR 453 (591)
Q Consensus 380 ~l~p-~~~~~--~~r~~~~~~~g~---~~~A~~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~ 453 (591)
..-| ++++| +.||.-+...++ .+.|+..|++|+++||+|..++.-.+..+.. ...|...+
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~------~~~~~~~~-------- 396 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIV------RHSQQPLD-------- 396 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH------HHhcCCcc--------
Confidence 3344 34554 668877766655 8899999999999999996544332221111 11111100
Q ss_pred cccccccc-hHHHHHHHHHc--CCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHH
Q 007721 454 WSSVDDIG-SLAVINQMLIN--DPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEA 530 (591)
Q Consensus 454 ~~~~~~~~-al~~~~~al~~--~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeA 530 (591)
..+.. +.....+++++ +|..+.+|.-+|......|++++|++.+++|++++| ++.+|..+|.++...|+.++|
T Consensus 397 ---~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA 472 (517)
T PRK10153 397 ---EKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLA 472 (517)
T ss_pred ---HHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHH
Confidence 00111 23456677774 889999999999999999999999999999999999 589999999999999999999
Q ss_pred HHHHHHhhcccccHHHHHH
Q 007721 531 LSRAEKSISIERTFEAFFL 549 (591)
Q Consensus 531 l~~~e~ai~l~~~~~~~~~ 549 (591)
++.|++|+.++|+++.|++
T Consensus 473 ~~~~~~A~~L~P~~pt~~~ 491 (517)
T PRK10153 473 ADAYSTAFNLRPGENTLYW 491 (517)
T ss_pred HHHHHHHHhcCCCCchHHH
Confidence 9999999999999997765
No 92
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.23 E-value=2.8e-08 Score=117.95 Aligned_cols=284 Identities=11% Similarity=0.055 Sum_probs=172.1
Q ss_pred chhHHHHHHHHhhcchhhhHHHHHHHHhhhHHhhhccHHHHHHHHHHHhhcc---ccchhhhhHHHHHHhCChHHHHHHH
Q 007721 235 SNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAG---HIYSLAGLARAKYKVGQQYSAYKLI 311 (591)
Q Consensus 235 ~~~~v~lLe~~~~~~~~~~~~~~a~~~lG~~~~~~g~~~eA~~~f~~Al~~~---~~~a~~~la~~~~~~G~~~~A~~~~ 311 (591)
.+.+..++....+..... ....+..+-..+..+|++++|.+.|+.+.+.+ ....+..+...+.+.|+.++|+..|
T Consensus 453 ~e~A~~lf~~M~~~Gl~p--D~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf 530 (1060)
T PLN03218 453 IDGALRVLRLVQEAGLKA--DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAY 530 (1060)
T ss_pred HHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 344555665544321110 13455666677778888888888888777653 2345556666778888888888888
Q ss_pred HHHHHhcC-CCHHHHHHH----HhcCCcHHHHHHHHHHHH----cCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcC
Q 007721 312 NSIISEHK-PTGWMYQER----SLYNLGREKIVDLNYASE----LDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFK 382 (591)
Q Consensus 312 ~~aI~~~~-~~g~a~~~r----~~y~~~~eA~~dl~~Ai~----LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~ 382 (591)
.......- +....|... +..+..++|...|....+ +.|+ ...|..+..+|.+.|++++|+..|+++.+.+
T Consensus 531 ~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~g 609 (1060)
T PLN03218 531 GIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEYN 609 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 87765431 222222222 122333778877777764 4564 5677778888888888888888888888765
Q ss_pred C--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhcccccc
Q 007721 383 L--SVDCLELRAWLFIAADDYESALRDTLALLAL--ESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVD 458 (591)
Q Consensus 383 p--~~~~~~~r~~~~~~~g~~~~A~~d~~~al~l--~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~ 458 (591)
. +...|......|.+.|++++|+..|+...+. .|+...| ..+.+.+...+
T Consensus 610 i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~Ty--------------------------nsLI~a~~k~G 663 (1060)
T PLN03218 610 IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFF--------------------------SALVDVAGHAG 663 (1060)
T ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH--------------------------HHHHHHHHhCC
Confidence 3 4555666667788888888888888887774 5653211 11112222223
Q ss_pred ccc-hHHHHHHHHHcC-CCCchhHhhhHHHHHHhCCHHHHHHHHHHHHh--cCCchHHHHHhHHHHHHHcCCHHHHHHHH
Q 007721 459 DIG-SLAVINQMLIND-PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARN--HSSSEHERLVYEGWILYDTGHREEALSRA 534 (591)
Q Consensus 459 ~~~-al~~~~~al~~~-P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~--l~p~~~~a~~~~G~~l~~~g~~eeAl~~~ 534 (591)
+.+ |..++++|++.. +-+...|..+...+.+.|+.++|++.|++..+ +.|+ ...+..+-..+.+.|++++|+..+
T Consensus 664 ~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pd-vvtyN~LI~gy~k~G~~eeAlelf 742 (1060)
T PLN03218 664 DLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPT-VSTMNALITALCEGNQLPKALEVL 742 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHH
Confidence 333 355666666543 23455666666666666666666666666543 3454 345666666666666666666666
Q ss_pred HHhhc--ccccHHHHH
Q 007721 535 EKSIS--IERTFEAFF 548 (591)
Q Consensus 535 e~ai~--l~~~~~~~~ 548 (591)
++... +.|+...|.
T Consensus 743 ~eM~~~Gi~Pd~~Ty~ 758 (1060)
T PLN03218 743 SEMKRLGLCPNTITYS 758 (1060)
T ss_pred HHHHHcCCCCCHHHHH
Confidence 65433 456655444
No 93
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.21 E-value=1.8e-10 Score=122.00 Aligned_cols=112 Identities=12% Similarity=0.073 Sum_probs=94.9
Q ss_pred HHhHHHHHHHhCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhhchHhHHHHH
Q 007721 355 YKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKL 433 (591)
Q Consensus 355 y~~rg~~l~~l~~~~eAl~~~~~al~l~p~-~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~~~~~~~~~ 433 (591)
+...|..+...|++++|+..|++||+++|+ +..+.+||.++..+|++++|+.++++|++++|++
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~--------------- 69 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSL--------------- 69 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC---------------
Confidence 456788888889999999999999999995 7778888999999999999888888887777765
Q ss_pred HHhhhcccCchhhhhhhhhccccccccchHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHH
Q 007721 434 LNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHER 513 (591)
Q Consensus 434 l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a 513 (591)
+.+|+++|.++..+|++++|+..|++|++++|++..+
T Consensus 70 -------------------------------------------~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~ 106 (356)
T PLN03088 70 -------------------------------------------AKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRF 106 (356)
T ss_pred -------------------------------------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 4568888999999999999999999999999999998
Q ss_pred HHhHHHHHHHc
Q 007721 514 LVYEGWILYDT 524 (591)
Q Consensus 514 ~~~~G~~l~~~ 524 (591)
+..++.+...+
T Consensus 107 ~~~l~~~~~kl 117 (356)
T PLN03088 107 TKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHH
Confidence 88888876655
No 94
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.20 E-value=2.3e-08 Score=118.57 Aligned_cols=289 Identities=9% Similarity=-0.013 Sum_probs=166.6
Q ss_pred HhhhccHHHHHHHHHHHhhccccchhhhhHHHHHHhCChHHHHHHHHHHHHhcC-CCHHHHHHH----HhcCCcHHHHHH
Q 007721 266 MFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHK-PTGWMYQER----SLYNLGREKIVD 340 (591)
Q Consensus 266 ~~~~g~~~eA~~~f~~Al~~~~~~a~~~la~~~~~~G~~~~A~~~~~~aI~~~~-~~g~a~~~r----~~y~~~~eA~~d 340 (591)
+...|..++|...|+.... +....+..+-..+...|+.+.|...+..+..... +....|... +..+..++|...
T Consensus 416 ~~~~g~~~eAl~lf~~M~~-pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~v 494 (1060)
T PLN03218 416 CKKQRAVKEAFRFAKLIRN-PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEV 494 (1060)
T ss_pred HHHCCCHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHH
Confidence 3344555555555543322 2223333444445555666666666665554432 111222111 112222556666
Q ss_pred HHHHHHcCCC-ChHHHHhHHHHHHHhCCHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh----
Q 007721 341 LNYASELDPT-LSFPYKYRAVAKMEEGQIRAAISEIDRIIVF--KLSVDCLELRAWLFIAADDYESALRDTLALLA---- 413 (591)
Q Consensus 341 l~~Ai~LdP~-~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l--~p~~~~~~~r~~~~~~~g~~~~A~~d~~~al~---- 413 (591)
|+...+.... +...|..+...|.+.|++++|+..|+++.+. .|+...|......+.+.|++++|.+.|+...+
T Consensus 495 f~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~g 574 (1060)
T PLN03218 495 FHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHP 574 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCC
Confidence 6665554322 4556666666666666666666666666443 34444455555555666666666666666543
Q ss_pred cCCcchhhhhhchHhHHHHHHHhhhcc---------cCchhhhhhhhhccccccccc-hHHHHHHHHHc--CCCCchhHh
Q 007721 414 LESNYMMFHGRVSGDHLVKLLNHHVRS---------WSPADCWIKLYDRWSSVDDIG-SLAVINQMLIN--DPGKSFLRF 481 (591)
Q Consensus 414 l~P~~~~~~~~~~~~~~~~~l~~~~~~---------~~~a~~~~~l~~~~~~~~~~~-al~~~~~al~~--~P~~~~~~~ 481 (591)
+.|+...|..-..++...+.++.+.+- ......|..+...+...++.+ |+.+|++|.+. .|+ ...|.
T Consensus 575 i~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~Tyn 653 (1060)
T PLN03218 575 IDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFFS 653 (1060)
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHH
Confidence 345532221111111111111111111 111233444444444556665 78899999887 454 56888
Q ss_pred hhHHHHHHhCCHHHHHHHHHHHHhcC-CchHHHHHhHHHHHHHcCCHHHHHHHHHHhhc--ccccHHHHHHHHHHhhh
Q 007721 482 RQSLLLLRLNCQKAAMRCLRLARNHS-SSEHERLVYEGWILYDTGHREEALSRAEKSIS--IERTFEAFFLKAYILAD 556 (591)
Q Consensus 482 ~~g~~l~~l~~~~eA~~~~~~Al~l~-p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~--l~~~~~~~~~~~~~~~~ 556 (591)
.+...+.+.|+.++|++.++...+.. +-+...+..+...+.+.|++++|+..|++..+ +.|+...|.....++..
T Consensus 654 sLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k 731 (1060)
T PLN03218 654 ALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCE 731 (1060)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999999999864 33567899999999999999999999998754 68998888766666544
No 95
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.20 E-value=1.2e-09 Score=126.25 Aligned_cols=275 Identities=11% Similarity=-0.024 Sum_probs=151.6
Q ss_pred HHhhhHHhhhccHHHHHHHHHHHhhccccchhhhhHHHHHHhCChHHHHHHHHHHHHhc-CCCHHHHHHH----HhcCCc
Q 007721 260 HQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEH-KPTGWMYQER----SLYNLG 334 (591)
Q Consensus 260 ~~lG~~~~~~g~~~eA~~~f~~Al~~~~~~a~~~la~~~~~~G~~~~A~~~~~~aI~~~-~~~g~a~~~r----~~y~~~ 334 (591)
..+...|..+|++++|.+.|+.... ....+|..+...+...|+.++|+..|.+..... .+....|... +..+..
T Consensus 263 n~Li~~y~k~g~~~~A~~vf~~m~~-~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~ 341 (697)
T PLN03081 263 CALIDMYSKCGDIEDARCVFDGMPE-KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALL 341 (697)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCC-CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccch
Confidence 3445556666666666666654322 223345555556666666666666666654432 1122222111 111222
Q ss_pred HHHHHHHHHHHHcC-CCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007721 335 REKIVDLNYASELD-PTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLA 413 (591)
Q Consensus 335 ~eA~~dl~~Ai~Ld-P~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~~~~~~~r~~~~~~~g~~~~A~~d~~~al~ 413 (591)
++|...+..+++.. +.+...|..+...|.+.|++++|...|+++. .|+...|......|...|+.++|+..|++..+
T Consensus 342 ~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~--~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~ 419 (697)
T PLN03081 342 EHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP--RKNLISWNALIAGYGNHGRGTKAVEMFERMIA 419 (697)
T ss_pred HHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC--CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55666666655554 4455566666666666666666666666654 35555555555566666666666666666554
Q ss_pred --cCCcchhhhhhchHhHHHHHHHhhhcccC----------chhhhhhhhhccccccccc-hHHHHHHHHHcCCCCchhH
Q 007721 414 --LESNYMMFHGRVSGDHLVKLLNHHVRSWS----------PADCWIKLYDRWSSVDDIG-SLAVINQMLINDPGKSFLR 480 (591)
Q Consensus 414 --l~P~~~~~~~~~~~~~~~~~l~~~~~~~~----------~a~~~~~l~~~~~~~~~~~-al~~~~~al~~~P~~~~~~ 480 (591)
+.|+...|..=..+....+.++...+.++ ....+..+.+.+.+.++.+ |...++++ ...| ++..|
T Consensus 420 ~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~ 497 (697)
T PLN03081 420 EGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMW 497 (697)
T ss_pred hCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHH
Confidence 44554433322222211111111111110 0111112222222233333 45555554 2233 34457
Q ss_pred hhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHHHHHHHHhhc
Q 007721 481 FRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSIS 539 (591)
Q Consensus 481 ~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~ 539 (591)
..+-.+....|+.+.|...+++.+++.|++...|..++.++...|++++|.+.+++.-+
T Consensus 498 ~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~ 556 (697)
T PLN03081 498 AALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKR 556 (697)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 77777778888888888888888888888888888888888888888888888876554
No 96
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=5.7e-09 Score=107.06 Aligned_cols=252 Identities=12% Similarity=0.041 Sum_probs=186.1
Q ss_pred chhHHHHHHHHhhcchhhhHHHHHHHHhhhHHhhhccHHHHHHHHHHHhhcc-c-cchhhhhHHHHHHhCChHHHHHHHH
Q 007721 235 SNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAG-H-IYSLAGLARAKYKVGQQYSAYKLIN 312 (591)
Q Consensus 235 ~~~~v~lLe~~~~~~~~~~~~~~a~~~lG~~~~~~g~~~eA~~~f~~Al~~~-~-~~a~~~la~~~~~~G~~~~A~~~~~ 312 (591)
...++.-|+...-..+... .+....|......|++++-...-...+.+. + ..-|.--+.+.+...++..|+..-.
T Consensus 248 n~~a~~~Fe~~~~~dpy~i---~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~e 324 (564)
T KOG1174|consen 248 YFQAEDIFSSTLCANPDNV---EAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVE 324 (564)
T ss_pred chHHHHHHHHHhhCChhhh---hhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHH
Confidence 3445666666443334332 233444666667777755444333334442 3 3334445567778888899999999
Q ss_pred HHHHhcCCCHHHHHHHHh----cCCcHHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCC-hHH
Q 007721 313 SIISEHKPTGWMYQERSL----YNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDC 387 (591)
Q Consensus 313 ~aI~~~~~~g~a~~~r~~----y~~~~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~-~~~ 387 (591)
+.|..+++.-.+|.-.|. ..+.++|+-.|+.|+.|.|-....|..+--.|+..|++.||+..-+-++..=|+ ...
T Consensus 325 K~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~ 404 (564)
T KOG1174|consen 325 KCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARS 404 (564)
T ss_pred HHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhh
Confidence 999999988777766653 244589999999999999999999999999999999999999999999988885 677
Q ss_pred HHHHH-HHHH-HcCCHHHHHHHHHHHHhcCCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccchHHH
Q 007721 388 LELRA-WLFI-AADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAV 465 (591)
Q Consensus 388 ~~~r~-~~~~-~~g~~~~A~~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~ 465 (591)
+.+.| .++. .----++|-..++++++++|+|..+. .... .+..+....+|+ ++.
T Consensus 405 LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV------~~~A----------------EL~~~Eg~~~D~--i~L 460 (564)
T KOG1174|consen 405 LTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAV------NLIA----------------ELCQVEGPTKDI--IKL 460 (564)
T ss_pred hhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHH------HHHH----------------HHHHhhCccchH--HHH
Confidence 77776 3433 33335889999999999999995322 2221 122222233333 899
Q ss_pred HHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHH
Q 007721 466 INQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERL 514 (591)
Q Consensus 466 ~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~ 514 (591)
+++.|...|.+ .+|.-+|.++...|.+++||..|..|++++|++--++
T Consensus 461 Le~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl 508 (564)
T KOG1174|consen 461 LEKHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTL 508 (564)
T ss_pred HHHHHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHH
Confidence 99999999875 6799999999999999999999999999999987654
No 97
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.17 E-value=5.2e-10 Score=102.52 Aligned_cols=110 Identities=11% Similarity=-0.039 Sum_probs=86.2
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccchHH
Q 007721 385 VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLA 464 (591)
Q Consensus 385 ~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~ 464 (591)
.+..|..|..+...|++++|.+.|+.+..+||.+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~---------------------------------------------- 68 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWS---------------------------------------------- 68 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc----------------------------------------------
Confidence 4556777888888888888888777766666654
Q ss_pred HHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHHHHHHHHhhccc---
Q 007721 465 VINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIE--- 541 (591)
Q Consensus 465 ~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l~--- 541 (591)
++.|+++|.++..+|++++|+..|.+|+.++|+++.+++|.|.|++..|+.++|.+.|+.||++-
T Consensus 69 ------------~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~ 136 (157)
T PRK15363 69 ------------FDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEV 136 (157)
T ss_pred ------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccC
Confidence 56788888888888888888888888888888888888888888888888888888888888873
Q ss_pred ccHHHHHHHHH
Q 007721 542 RTFEAFFLKAY 552 (591)
Q Consensus 542 ~~~~~~~~~~~ 552 (591)
|....---||-
T Consensus 137 ~~~~~l~~~A~ 147 (157)
T PRK15363 137 SEHQILRQRAE 147 (157)
T ss_pred hhHHHHHHHHH
Confidence 55555544443
No 98
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.16 E-value=2.9e-09 Score=104.15 Aligned_cols=176 Identities=14% Similarity=0.006 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007721 336 EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLAL 414 (591)
Q Consensus 336 eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~-~~~~~~r~~~~~~~g~~~~A~~d~~~al~l 414 (591)
.+...+-+....+|++... .+++..+...|+-+.++....++.--.|. ...+...|......|++.+|+..++++.++
T Consensus 51 ~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l 129 (257)
T COG5010 51 GAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL 129 (257)
T ss_pred HHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc
Confidence 3555556666667777666 67777777777766666666665555553 444444666666777777777777777777
Q ss_pred CCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccchHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHH
Q 007721 415 ESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQK 494 (591)
Q Consensus 415 ~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~ 494 (591)
+|++ ..++..++.......+.+.| -.-|.|++++.|+.+...+|+|..+...|+.+
T Consensus 130 ~p~d------~~~~~~lgaaldq~Gr~~~A------------------r~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~ 185 (257)
T COG5010 130 APTD------WEAWNLLGAALDQLGRFDEA------------------RRAYRQALELAPNEPSIANNLGMSLLLRGDLE 185 (257)
T ss_pred CCCC------hhhhhHHHHHHHHccChhHH------------------HHHHHHHHHhccCCchhhhhHHHHHHHcCCHH
Confidence 7766 33444444333334444444 34566777777777778888888888888888
Q ss_pred HHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHHHHHHHH
Q 007721 495 AAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEK 536 (591)
Q Consensus 495 eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ 536 (591)
.|...+..|...-+.+.-+..|+..+.-..|++++|-....+
T Consensus 186 ~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 186 DAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 888888888888887788888888888888888887655444
No 99
>PRK11906 transcriptional regulator; Provisional
Probab=99.16 E-value=2.4e-10 Score=120.52 Aligned_cols=154 Identities=14% Similarity=0.040 Sum_probs=119.4
Q ss_pred HHHHHHHHHcC---CHHHHHHHHHHHH---hcCCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhh-hhccccc--cc
Q 007721 389 ELRAWLFIAAD---DYESALRDTLALL---ALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKL-YDRWSSV--DD 459 (591)
Q Consensus 389 ~~r~~~~~~~g---~~~~A~~d~~~al---~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l-~~~~~~~--~~ 459 (591)
+.||..+...+ +.+.|+..|++|+ +++|+|..+++-.+-.+ ++. .-.|+.. +.
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h------------------~~~~~~g~~~~~~~~ 320 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECH------------------MSLALHGKSELELAA 320 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHH------------------HHHHHhcCCCchHHH
Confidence 55665543333 4577888888888 88888865444333222 222 2333331 22
Q ss_pred cchHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHHHHHHHHhhc
Q 007721 460 IGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSIS 539 (591)
Q Consensus 460 ~~al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~ 539 (591)
.+++...++|+++||.++.+++..|.++...|+++.|+..+++|+.++|+++.++++.||++.-.|+.++|++..++|++
T Consensus 321 ~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 321 QKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 22677999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHH-HHHHHHHH--hhhcCCC
Q 007721 540 IERTFE-AFFLKAYI--LADTNLD 560 (591)
Q Consensus 540 l~~~~~-~~~~~~~~--~~~~~~~ 560 (591)
++|.=. |=-+|-.. +.-+.||
T Consensus 401 LsP~~~~~~~~~~~~~~~~~~~~~ 424 (458)
T PRK11906 401 LEPRRRKAVVIKECVDMYVPNPLK 424 (458)
T ss_pred cCchhhHHHHHHHHHHHHcCCchh
Confidence 999876 55566544 3444454
No 100
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.14 E-value=2e-10 Score=121.60 Aligned_cols=96 Identities=17% Similarity=0.062 Sum_probs=88.6
Q ss_pred cccc-hHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHHHHHHHH
Q 007721 458 DDIG-SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEK 536 (591)
Q Consensus 458 ~~~~-al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ 536 (591)
+++. |+..|++||+++|+++.+|+++|.++.++|++++|+.++++|++++|+++.+++.+|.+++.+|++++|+..|++
T Consensus 16 ~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~ 95 (356)
T PLN03088 16 DDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEK 95 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4444 689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccHH-HHHHHHHH
Q 007721 537 SISIERTFE-AFFLKAYI 553 (591)
Q Consensus 537 ai~l~~~~~-~~~~~~~~ 553 (591)
++.++|+.. +....+.+
T Consensus 96 al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 96 GASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHhCCCCHHHHHHHHHH
Confidence 999999988 55455444
No 101
>PLN03077 Protein ECB2; Provisional
Probab=99.14 E-value=1.3e-08 Score=120.40 Aligned_cols=248 Identities=9% Similarity=-0.003 Sum_probs=158.3
Q ss_pred HHHHhhhHHhhhccHHHHHHHHHHHhhccccchhhhhHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHH---------
Q 007721 258 ALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQER--------- 328 (591)
Q Consensus 258 a~~~lG~~~~~~g~~~eA~~~f~~Al~~~~~~a~~~la~~~~~~G~~~~A~~~~~~aI~~~~~~g~a~~~r--------- 328 (591)
.+..+...|.++|++++|.+.|++..+. ...+|..+...+...|+.++|+..|.+.+...++....|...
T Consensus 426 ~~n~Li~~y~k~g~~~~A~~vf~~m~~~-d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~ 504 (857)
T PLN03077 426 VANALIEMYSKCKCIDKALEVFHNIPEK-DVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGA 504 (857)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCCCC-CeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhch
Confidence 3455666788888888888888765433 334566666777888888888888888765433322211110
Q ss_pred ------------------------------HhcCCcHHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHH
Q 007721 329 ------------------------------SLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRI 378 (591)
Q Consensus 329 ------------------------------~~y~~~~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~a 378 (591)
...+..++|+..|+.. +.+...|..+...|.+.|+.++|+..|+++
T Consensus 505 l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M 580 (857)
T PLN03077 505 LMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRM 580 (857)
T ss_pred HHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 0012225666666554 445666777777777777777777777766
Q ss_pred Hhc--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhc
Q 007721 379 IVF--KLSVDCLELRAWLFIAADDYESALRDTLALLA---LESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDR 453 (591)
Q Consensus 379 l~l--~p~~~~~~~r~~~~~~~g~~~~A~~d~~~al~---l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~ 453 (591)
++. .|+...+...-..+.+.|++++|...|+...+ +.|+-. . ..|++.++
T Consensus 581 ~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~-------~----------------y~~lv~~l-- 635 (857)
T PLN03077 581 VESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLK-------H----------------YACVVDLL-- 635 (857)
T ss_pred HHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchH-------H----------------HHHHHHHH--
Confidence 653 45544444444456667777777777776653 345421 1 11112222
Q ss_pred cccccccc-hHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHHHH
Q 007721 454 WSSVDDIG-SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALS 532 (591)
Q Consensus 454 ~~~~~~~~-al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~ 532 (591)
.+.++.+ |...++++ ...|+ +..|..+-.+...-|+.+.|....+++++++|+++..++.+++++...|++++|.+
T Consensus 636 -~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~ 712 (857)
T PLN03077 636 -GRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVAR 712 (857)
T ss_pred -HhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHH
Confidence 2223333 46666665 35565 44555555566778889999999999999999999999999999999999999998
Q ss_pred HHHHhh
Q 007721 533 RAEKSI 538 (591)
Q Consensus 533 ~~e~ai 538 (591)
..+.-.
T Consensus 713 vr~~M~ 718 (857)
T PLN03077 713 VRKTMR 718 (857)
T ss_pred HHHHHH
Confidence 876654
No 102
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.13 E-value=1.1e-10 Score=92.81 Aligned_cols=67 Identities=15% Similarity=0.189 Sum_probs=65.4
Q ss_pred CchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcC-CHHHHHHHHHHhhcccc
Q 007721 476 KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTG-HREEALSRAEKSISIER 542 (591)
Q Consensus 476 ~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g-~~eeAl~~~e~ai~l~~ 542 (591)
++..|+++|..+..+|++++|+..|++|++++|+++.+++++|.+++.+| ++++|++.+++|++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 57899999999999999999999999999999999999999999999999 79999999999999998
No 103
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.13 E-value=1.1e-08 Score=105.82 Aligned_cols=257 Identities=9% Similarity=-0.026 Sum_probs=175.8
Q ss_pred hhhHHhhhccHHHHHHHHHHHhhccc----cchhhhhHHHHHHhCCh--HHHHHHHHHHHHhcCCCHHHHHHHHhc----
Q 007721 262 LGCVMFEREEYKDACYYFEAAADAGH----IYSLAGLARAKYKVGQQ--YSAYKLINSIISEHKPTGWMYQERSLY---- 331 (591)
Q Consensus 262 lG~~~~~~g~~~eA~~~f~~Al~~~~----~~a~~~la~~~~~~G~~--~~A~~~~~~aI~~~~~~g~a~~~r~~y---- 331 (591)
.+..++..|+++.|++.. +.++... ..+-.++..+++.+|+. ..|-..-..++....-++.+..+.|..
T Consensus 425 ka~~~lk~~d~~~aieil-kv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~n 503 (840)
T KOG2003|consen 425 KAGELLKNGDIEGAIEIL-KVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFAN 503 (840)
T ss_pred HHHHHHhccCHHHHHHHH-HHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeec
Confidence 455677788888888765 3333321 22445666778887764 345555566677777778888888752
Q ss_pred CCcHHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007721 332 NLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLA 410 (591)
Q Consensus 332 ~~~~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~-~~~~~~r~~~~~~~g~~~~A~~d~~~ 410 (591)
+..++|..-|..|+.-|..-+++++|.|..+..+|+.++|+..|-|.-.+=.+ .+.++..+.+|.-+.+..+|+..|.+
T Consensus 504 gd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q 583 (840)
T KOG2003|consen 504 GDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQ 583 (840)
T ss_pred CcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 23388999999999999999999999999999999999999999887766554 67777888999999999999999999
Q ss_pred HHhcCCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccchHHHHHHHHHcCCCCchhHhhhHHHHHHh
Q 007721 411 LLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRL 490 (591)
Q Consensus 411 al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~~P~~~~~~~~~g~~l~~l 490 (591)
+..+=|+++ +....++.|.....+-.+ |..++...-.--|.+.+.--.+|.-+...
T Consensus 584 ~~slip~dp------~ilskl~dlydqegdksq------------------afq~~ydsyryfp~nie~iewl~ayyidt 639 (840)
T KOG2003|consen 584 ANSLIPNDP------AILSKLADLYDQEGDKSQ------------------AFQCHYDSYRYFPCNIETIEWLAAYYIDT 639 (840)
T ss_pred hcccCCCCH------HHHHHHHHHhhcccchhh------------------hhhhhhhcccccCcchHHHHHHHHHHHhh
Confidence 999999884 333333333222222222 34445555555566666655666666666
Q ss_pred CCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHHHHHHHHhhccccc
Q 007721 491 NCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERT 543 (591)
Q Consensus 491 ~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l~~~ 543 (591)
.-.|.|+..+++|--+.|+..-=..-.+.|+-..|+|++|+..|+...+.=|.
T Consensus 640 qf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpe 692 (840)
T KOG2003|consen 640 QFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPE 692 (840)
T ss_pred HHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCcc
Confidence 66666666666666666666555555666666666666666666665555443
No 104
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.12 E-value=2.1e-08 Score=119.20 Aligned_cols=267 Identities=14% Similarity=0.044 Sum_probs=180.4
Q ss_pred HHHHHhhhHHhhhccHHHHHHHHHHHhhccc-------cchhhhhHHHHHHhCChHHHHHHHHHHHHhcCCC--------
Q 007721 257 LALHQLGCVMFEREEYKDACYYFEAAADAGH-------IYSLAGLARAKYKVGQQYSAYKLINSIISEHKPT-------- 321 (591)
Q Consensus 257 ~a~~~lG~~~~~~g~~~eA~~~f~~Al~~~~-------~~a~~~la~~~~~~G~~~~A~~~~~~aI~~~~~~-------- 321 (591)
.....+|.++...|++++|...+++++...+ ..+...+|.++...|+++.|...+.+++......
T Consensus 453 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~ 532 (903)
T PRK04841 453 EFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALW 532 (903)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHH
Confidence 3344577888889999999999999887411 1234556778888999999999998887653321
Q ss_pred -----HHHHHHHHhcCCcHHHHHHHHHHHHcCC--------CChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCC----C
Q 007721 322 -----GWMYQERSLYNLGREKIVDLNYASELDP--------TLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL----S 384 (591)
Q Consensus 322 -----g~a~~~r~~y~~~~eA~~dl~~Ai~LdP--------~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p----~ 384 (591)
+.++..+ +..++|...+++++.+-. .....+..+|.++...|++++|.+.+++++.+.. .
T Consensus 533 ~~~~la~~~~~~---G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~ 609 (903)
T PRK04841 533 SLLQQSEILFAQ---GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQ 609 (903)
T ss_pred HHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCch
Confidence 2222333 333888888888877622 1234566789999999999999999999988632 1
Q ss_pred --hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhh-hhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccc
Q 007721 385 --VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFH-GRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIG 461 (591)
Q Consensus 385 --~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~-~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~ 461 (591)
...+..++.++...|++++|.+.++++.++.+...... ................++.+.|..|
T Consensus 610 ~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~-------------- 675 (903)
T PRK04841 610 QQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANW-------------- 675 (903)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHH--------------
Confidence 23345578889999999999999999988755421100 0000000111111223344444322
Q ss_pred hHHHHHHHHHcCCCCc----hhHhhhHHHHHHhCCHHHHHHHHHHHHhcC------CchHHHHHhHHHHHHHcCCHHHHH
Q 007721 462 SLAVINQMLINDPGKS----FLRFRQSLLLLRLNCQKAAMRCLRLARNHS------SSEHERLVYEGWILYDTGHREEAL 531 (591)
Q Consensus 462 al~~~~~al~~~P~~~----~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~------p~~~~a~~~~G~~l~~~g~~eeAl 531 (591)
+.+.....+... ..+..+|.++..+|++++|...+++|+... +..+.++..+|.+++..|+.++|.
T Consensus 676 ----l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~ 751 (903)
T PRK04841 676 ----LRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQ 751 (903)
T ss_pred ----HHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 222222222222 225678999999999999999999999863 334668899999999999999999
Q ss_pred HHHHHhhcccccH
Q 007721 532 SRAEKSISIERTF 544 (591)
Q Consensus 532 ~~~e~ai~l~~~~ 544 (591)
..+++|+++-...
T Consensus 752 ~~L~~Al~la~~~ 764 (903)
T PRK04841 752 RVLLEALKLANRT 764 (903)
T ss_pred HHHHHHHHHhCcc
Confidence 9999999985443
No 105
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.12 E-value=1.1e-07 Score=102.43 Aligned_cols=289 Identities=14% Similarity=0.008 Sum_probs=200.4
Q ss_pred HHHHHHHHhh-cchhhhHHHHHHHHhhhHHhhhccHHHHHHHHHHHhhccccchhhhhH--HHHHHhCChHHHHHHHHHH
Q 007721 238 TVMLLERLGE-CSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLA--RAKYKVGQQYSAYKLINSI 314 (591)
Q Consensus 238 ~v~lLe~~~~-~~~~~~~~~~a~~~lG~~~~~~g~~~eA~~~f~~Al~~~~~~a~~~la--~~~~~~G~~~~A~~~~~~a 314 (591)
...+|++++. ||.. ...+.-.+..+...|+.-.|.....+|++..+..--..++ .+.+....++.|...+.++
T Consensus 569 l~Allqkav~~~pka----e~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llaka 644 (913)
T KOG0495|consen 569 LEALLQKAVEQCPKA----EILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKA 644 (913)
T ss_pred HHHHHHHHHHhCCcc----hhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 4456666554 4321 2233334455666688888888888887774433222333 3445566778888888887
Q ss_pred HHhcCC-CHHHHHHHHh-c-CCcHHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCC-hHHHHH
Q 007721 315 ISEHKP-TGWMYQERSL-Y-NLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLEL 390 (591)
Q Consensus 315 I~~~~~-~g~a~~~r~~-y-~~~~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~-~~~~~~ 390 (591)
-...+. .-||-...-. | ...++|+.-++.+++.-|++.-.|+.+|.++.++++.+.|-+.|..-++.-|+ ...|..
T Consensus 645 r~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWll 724 (913)
T KOG0495|consen 645 RSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLL 724 (913)
T ss_pred hccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHH
Confidence 665542 2333322211 1 12288888899999999999999999999999999999999999999988886 677888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccchHHHHHHHH
Q 007721 391 RAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQML 470 (591)
Q Consensus 391 r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al 470 (591)
++.+-...|..-.|...++++.--+|++.. .....-..+......++| -..+-+||
T Consensus 725 LakleEk~~~~~rAR~ildrarlkNPk~~~------lwle~Ir~ElR~gn~~~a------------------~~lmakAL 780 (913)
T KOG0495|consen 725 LAKLEEKDGQLVRARSILDRARLKNPKNAL------LWLESIRMELRAGNKEQA------------------ELLMAKAL 780 (913)
T ss_pred HHHHHHHhcchhhHHHHHHHHHhcCCCcch------hHHHHHHHHHHcCCHHHH------------------HHHHHHHH
Confidence 888888888999999999999999998732 111111112222222233 44678899
Q ss_pred HcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHHHHHHHHhhcccccHH---HH
Q 007721 471 INDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE---AF 547 (591)
Q Consensus 471 ~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l~~~~~---~~ 547 (591)
+-.|+++.+|.-.=...-+-+| ......|++.--+|+..+...|-.++....+++|...|+||..++|++. +|
T Consensus 781 Qecp~sg~LWaEaI~le~~~~r----kTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~ 856 (913)
T KOG0495|consen 781 QECPSSGLLWAEAIWLEPRPQR----KTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAW 856 (913)
T ss_pred HhCCccchhHHHHHHhccCccc----chHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHH
Confidence 9999999888544333333333 3344567777777788889999999999999999999999999999887 89
Q ss_pred HHHHHHhhhcC
Q 007721 548 FLKAYILADTN 558 (591)
Q Consensus 548 ~~~~~~~~~~~ 558 (591)
|+|-+...-+-
T Consensus 857 fykfel~hG~e 867 (913)
T KOG0495|consen 857 FYKFELRHGTE 867 (913)
T ss_pred HHHHHHHhCCH
Confidence 99988776543
No 106
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.11 E-value=2.5e-10 Score=90.84 Aligned_cols=67 Identities=16% Similarity=0.224 Sum_probs=63.7
Q ss_pred CChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCC
Q 007721 350 TLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAAD-DYESALRDTLALLALES 416 (591)
Q Consensus 350 ~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~-~~~~~~r~~~~~~~g-~~~~A~~d~~~al~l~P 416 (591)
+++..|..+|.++..+|++++|+..|+++|+++|+ +..++++|.++..+| ++++|+.+++++++++|
T Consensus 1 e~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp TSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 36789999999999999999999999999999997 788999999999999 79999999999999999
No 107
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.10 E-value=3.2e-09 Score=103.83 Aligned_cols=154 Identities=16% Similarity=0.047 Sum_probs=87.6
Q ss_pred hhhHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHH--h--cCCcHHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCC
Q 007721 292 AGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERS--L--YNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQ 367 (591)
Q Consensus 292 ~~la~~~~~~G~~~~A~~~~~~aI~~~~~~g~a~~~r~--~--y~~~~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~ 367 (591)
.+++..+...|+-+.+..-..++.-.++..+......+ . -+.+.+|+..+++|..++|+++.+|+-+|.+|.+.|+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr 149 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGR 149 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccC
Confidence 55566666666655555544444444444333331111 1 1222555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhhchHhHHHHHHHhhhcccCchhh
Q 007721 368 IRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADC 446 (591)
Q Consensus 368 ~~eAl~~~~~al~l~p~-~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~ 446 (591)
+++|-..|++|+++.|+ +....|.|..+.-.||++.|...+..+
T Consensus 150 ~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a----------------------------------- 194 (257)
T COG5010 150 FDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPA----------------------------------- 194 (257)
T ss_pred hhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHH-----------------------------------
Confidence 55555555555555553 444555555555555555555554444
Q ss_pred hhhhhhccccccccchHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHH
Q 007721 447 WIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLA 503 (591)
Q Consensus 447 ~~~l~~~~~~~~~~~al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~A 503 (591)
-..-|.+.....|++.++-..|++++|..+..+=
T Consensus 195 -----------------------~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 195 -----------------------YLSPAADSRVRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred -----------------------HhCCCCchHHHHHHHHHHhhcCChHHHHhhcccc
Confidence 4444455666778888999999999998886653
No 108
>PLN03077 Protein ECB2; Provisional
Probab=99.10 E-value=5.3e-08 Score=115.18 Aligned_cols=284 Identities=10% Similarity=-0.043 Sum_probs=173.3
Q ss_pred HHHHHhhhHHhhhccHHHHHHHHHHHhhccccchhhhhHHHHHHhCChHHHHHHHHHHHHhc--CCC---HHHHHHHHhc
Q 007721 257 LALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEH--KPT---GWMYQERSLY 331 (591)
Q Consensus 257 ~a~~~lG~~~~~~g~~~eA~~~f~~Al~~~~~~a~~~la~~~~~~G~~~~A~~~~~~aI~~~--~~~---g~a~~~r~~y 331 (591)
..++.+...+..+|++++|.+.|++... +...+|..+...+.+.|++++|+..|.+..... |+. ..+....+..
T Consensus 324 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~-~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~ 402 (857)
T PLN03077 324 SVCNSLIQMYLSLGSWGEAEKVFSRMET-KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACL 402 (857)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhCCC-CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhcc
Confidence 4566778889999999999999987543 334567778888999999999999999886543 432 2222222333
Q ss_pred CCcHHHHHHHHHHHHcCCC-ChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007721 332 NLGREKIVDLNYASELDPT-LSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLA 410 (591)
Q Consensus 332 ~~~~eA~~dl~~Ai~LdP~-~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~~~~~~~r~~~~~~~g~~~~A~~d~~~ 410 (591)
+..++|...+..+++.... +...|..+...|.+.|++++|...|++.. +|+...|......+...|++++|+..|++
T Consensus 403 g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~--~~d~vs~~~mi~~~~~~g~~~eA~~lf~~ 480 (857)
T PLN03077 403 GDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP--EKDVISWTSIIAGLRLNNRCFEALIFFRQ 480 (857)
T ss_pred chHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC--CCCeeeHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4448888888888887543 46778889999999999999999999876 56666777777788899999999999999
Q ss_pred HHh-cCCcchhhhhhchHhHHHHHHHhhhcccCch------------hhhhhhhhccccccccc-hHHHHHHHHHcCCCC
Q 007721 411 LLA-LESNYMMFHGRVSGDHLVKLLNHHVRSWSPA------------DCWIKLYDRWSSVDDIG-SLAVINQMLINDPGK 476 (591)
Q Consensus 411 al~-l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a------------~~~~~l~~~~~~~~~~~-al~~~~~al~~~P~~ 476 (591)
.++ +.|+...|..-..+....+.++...+-+..+ .+++..|-+ .++.+ |...|+++ +.+
T Consensus 481 m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k---~G~~~~A~~~f~~~----~~d 553 (857)
T PLN03077 481 MLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVR---CGRMNYAWNQFNSH----EKD 553 (857)
T ss_pred HHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHH---cCCHHHHHHHHHhc----CCC
Confidence 875 5677655544444333333333222221111 111222222 12222 33444443 334
Q ss_pred chhHhhhHHHHHHhCCHHHHHHHHHHHHh--cCCchHHHHHhHHHHHHHcCCHHHHHHHHHHhh---cccccHHHHHHHH
Q 007721 477 SFLRFRQSLLLLRLNCQKAAMRCLRLARN--HSSSEHERLVYEGWILYDTGHREEALSRAEKSI---SIERTFEAFFLKA 551 (591)
Q Consensus 477 ~~~~~~~g~~l~~l~~~~eA~~~~~~Al~--l~p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai---~l~~~~~~~~~~~ 551 (591)
...|+.+...+.+.|+.++|++.+++..+ +.||.. .+..+=..+...|++++|+..|++.. .+.|+.+.|.-..
T Consensus 554 ~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~-T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv 632 (857)
T PLN03077 554 VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEV-TFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVV 632 (857)
T ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcc-cHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 45555555555555555555555554443 234322 23333333444455555555555444 2355554444333
No 109
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.09 E-value=1.3e-10 Score=116.33 Aligned_cols=221 Identities=13% Similarity=0.049 Sum_probs=162.3
Q ss_pred CHHHHHHHHhcCCcHHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcC
Q 007721 321 TGWMYQERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSV-DCLELRAWLFIAAD 399 (591)
Q Consensus 321 ~g~a~~~r~~y~~~~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~~-~~~~~r~~~~~~~g 399 (591)
-|.-|..+|.| +||+.+|.+++.++|.++-.|.|||.+|.+++++..|..+++.||.++-.+ .+|.-|+.+...+|
T Consensus 103 ~GN~yFKQgKy---~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKY---EEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccch---hHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 45666677666 899999999999999999999999999999999999999999999888764 56667889999999
Q ss_pred CHHHHHHHHHHHHhcCCcchhhhhhch---HhHHHHHHHhhhcccCchh-hhhhhh-hccccc-----ccc-chHHHHHH
Q 007721 400 DYESALRDTLALLALESNYMMFHGRVS---GDHLVKLLNHHVRSWSPAD-CWIKLY-DRWSSV-----DDI-GSLAVINQ 468 (591)
Q Consensus 400 ~~~~A~~d~~~al~l~P~~~~~~~~~~---~~~~~~~l~~~~~~~~~a~-~~~~l~-~~~~~~-----~~~-~al~~~~~ 468 (591)
..++|-.||+.+|+|.|+.....-..+ -......+...-.-+..|. -..|.. .+-..+ ..+ .++.++-+
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i~~~~~ 259 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELKKSLARINSLRERKIATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRSVPVVDVVS 259 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHHHHHHHhcchHhhhHHhhcCCCCCccccchhhhccccCcchhhhhhhccccceeEeec
Confidence 999999999999999998754211111 1111111111110111111 111111 111111 111 14556677
Q ss_pred HHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHHHHHHHHhhcccccHH
Q 007721 469 MLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE 545 (591)
Q Consensus 469 al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l~~~~~ 545 (591)
.++-+-.+..+..+ +..+.+.-.+++|+-...+++.++|..--+.-.+|.+-.-.|...|+-+.++.++.+.|..+
T Consensus 260 ~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~ 335 (536)
T KOG4648|consen 260 PRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVAPAVE 335 (536)
T ss_pred cccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcCcchhheeeeccccc
Confidence 77777777777777 88888888999999999999999999888888899999999999999999999999888776
No 110
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.09 E-value=5.8e-08 Score=112.21 Aligned_cols=193 Identities=8% Similarity=-0.049 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHh--cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007721 335 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIV--FKLSVDCLELRAWLFIAADDYESALRDTLALL 412 (591)
Q Consensus 335 ~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~--l~p~~~~~~~r~~~~~~~g~~~~A~~d~~~al 412 (591)
++|...|++. .+.+...|..+...|.+.|++++|+..|++..+ +.|+...+.....++...|++++|.+.+..++
T Consensus 276 ~~A~~vf~~m---~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~ 352 (697)
T PLN03081 276 EDARCVFDGM---PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLI 352 (697)
T ss_pred HHHHHHHHhC---CCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 4444444432 233444555555555555555555555555443 23343444444444455555555555555554
Q ss_pred hcCCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccc-hHHHHHHHHHcCCCCchhHhhhHHHHHHhC
Q 007721 413 ALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIG-SLAVINQMLINDPGKSFLRFRQSLLLLRLN 491 (591)
Q Consensus 413 ~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~-al~~~~~al~~~P~~~~~~~~~g~~l~~l~ 491 (591)
+..... ....+..+.+.+...++.+ |..+|+++.+ | +...|+.+...+.+.|
T Consensus 353 ~~g~~~------------------------d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~-d~~t~n~lI~~y~~~G 405 (697)
T PLN03081 353 RTGFPL------------------------DIVANTALVDLYSKWGRMEDARNVFDRMPR--K-NLISWNALIAGYGNHG 405 (697)
T ss_pred HhCCCC------------------------CeeehHHHHHHHHHCCCHHHHHHHHHhCCC--C-CeeeHHHHHHHHHHcC
Confidence 433110 0112223333333344444 5667777654 2 5567777777788888
Q ss_pred CHHHHHHHHHHHHh--cCCchHHHHHhHHHHHHHcCCHHHHHHHHHHhh---cccccHHHHHHHHHHhhhcC
Q 007721 492 CQKAAMRCLRLARN--HSSSEHERLVYEGWILYDTGHREEALSRAEKSI---SIERTFEAFFLKAYILADTN 558 (591)
Q Consensus 492 ~~~eA~~~~~~Al~--l~p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai---~l~~~~~~~~~~~~~~~~~~ 558 (591)
+.++|++.+++..+ +.|+.. .+..+-.++...|.+++|+..|++.. .+.|+.+.|....-.|+..+
T Consensus 406 ~~~~A~~lf~~M~~~g~~Pd~~-T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G 476 (697)
T PLN03081 406 RGTKAVEMFERMIAEGVAPNHV-TFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREG 476 (697)
T ss_pred CHHHHHHHHHHHHHhCCCCCHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcC
Confidence 88888888877655 455533 45555566777788888887777765 35777777766666666554
No 111
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.08 E-value=2.4e-08 Score=107.81 Aligned_cols=295 Identities=14% Similarity=0.062 Sum_probs=205.0
Q ss_pred HHHHHHhhhHHhhhccHHHHHHHHHHHhhc--cccchhhhhHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHhcCC
Q 007721 256 MLALHQLGCVMFEREEYKDACYYFEAAADA--GHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNL 333 (591)
Q Consensus 256 ~~a~~~lG~~~~~~g~~~eA~~~f~~Al~~--~~~~a~~~la~~~~~~G~~~~A~~~~~~aI~~~~~~g~a~~~r~~y~~ 333 (591)
..+++....-..+.++|.......++.++. .|..+++-.|..+..+|+.++|+.....++...+..+..|+-.|.+.+
T Consensus 7 E~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 7 ENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHh
Confidence 455666666677888998888888877776 467788888888999999999999999999999888888877766543
Q ss_pred c----HHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCChH-HHHHHHHHHHHcCCHHHHHHHH
Q 007721 334 G----REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVD-CLELRAWLFIAADDYESALRDT 408 (591)
Q Consensus 334 ~----~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~~~-~~~~r~~~~~~~g~~~~A~~d~ 408 (591)
. .+|+.+|..|+.++|++...|..++....++++++.....-++.++++|+.. .|...+..+.-.|++..|+.-.
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il 166 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEIL 166 (700)
T ss_pred hhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 8999999999999999999999999999999999999999999999999754 4566778889999999998877
Q ss_pred HHHHhcC---CcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccchHHHHHHHHHcCCC---CchhHhh
Q 007721 409 LALLALE---SNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPG---KSFLRFR 482 (591)
Q Consensus 409 ~~al~l~---P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~~P~---~~~~~~~ 482 (591)
+.-.... |.-..+ -+. ..+....+-..++. ..+ ..++.-+...|. ..-....
T Consensus 167 ~ef~~t~~~~~s~~~~-e~s------e~~Ly~n~i~~E~g-------------~~q--~ale~L~~~e~~i~Dkla~~e~ 224 (700)
T KOG1156|consen 167 EEFEKTQNTSPSKEDY-EHS------ELLLYQNQILIEAG-------------SLQ--KALEHLLDNEKQIVDKLAFEET 224 (700)
T ss_pred HHHHHhhccCCCHHHH-HHH------HHHHHHHHHHHHcc-------------cHH--HHHHHHHhhhhHHHHHHHHhhh
Confidence 6666544 322111 111 11111111111110 000 011111222221 1223456
Q ss_pred hHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHH-HcCCHHHHHHHHHHhhcccccHH-HHHHHHHHhhhcCCC
Q 007721 483 QSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILY-DTGHREEALSRAEKSISIERTFE-AFFLKAYILADTNLD 560 (591)
Q Consensus 483 ~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~-~~g~~eeAl~~~e~ai~l~~~~~-~~~~~~~~~~~~~~~ 560 (591)
+|.++.+++++|+|...|+.-+..+||+.+=+..+-.++. -++..+.=-..|.+.-+.=|-++ .=++=-..+.++++-
T Consensus 225 ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~ 304 (700)
T KOG1156|consen 225 KADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELK 304 (700)
T ss_pred HHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhH
Confidence 8899999999999999999999999999877776666663 44444333366777666655555 333333445555555
Q ss_pred CCchhHHHHHHH
Q 007721 561 PESSTYVIQLLE 572 (591)
Q Consensus 561 ~~~~~~~~~~~~ 572 (591)
-.-+.++.++|+
T Consensus 305 ~~vdkyL~~~l~ 316 (700)
T KOG1156|consen 305 EIVDKYLRPLLS 316 (700)
T ss_pred HHHHHHHHHHhh
Confidence 444555554443
No 112
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.06 E-value=1e-07 Score=95.45 Aligned_cols=205 Identities=15% Similarity=0.084 Sum_probs=164.8
Q ss_pred hcchhHHHHHHHHHhhhhccccchhHHHHHHHHhhcc-hhhhHHHHHHHHhhhHHhhhccHHHHHHHHHHHhhccc--cc
Q 007721 213 VGHASFLLYYFLSQVAMEKDRVSNTTVMLLERLGECS-TERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGH--IY 289 (591)
Q Consensus 213 ~~~~~~~~~a~Ls~v~~d~~~r~~~~v~lLe~~~~~~-~~~~~~~~a~~~lG~~~~~~g~~~eA~~~f~~Al~~~~--~~ 289 (591)
..++.|.....||...-.... -+.++.+-+.++..| .+.-++..|+.+||.-|...|-++.|+..|...+..+. ..
T Consensus 64 ~d~~t~e~~ltLGnLfRsRGE-vDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~ 142 (389)
T COG2956 64 EDPETFEAHLTLGNLFRSRGE-VDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEG 142 (389)
T ss_pred cCchhhHHHHHHHHHHHhcch-HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHH
Confidence 455667677778876644444 556777777776655 34457788999999999999999999999998777542 34
Q ss_pred hhhhhHHHHHHhCChHHHHHHHHHHHHhcCC-----CHHHHHHHHhcC----CcHHHHHHHHHHHHcCCCChHHHHhHHH
Q 007721 290 SLAGLARAKYKVGQQYSAYKLINSIISEHKP-----TGWMYQERSLYN----LGREKIVDLNYASELDPTLSFPYKYRAV 360 (591)
Q Consensus 290 a~~~la~~~~~~G~~~~A~~~~~~aI~~~~~-----~g~a~~~r~~y~----~~~eA~~dl~~Ai~LdP~~~~ay~~rg~ 360 (591)
|...+-.+|....++.+|++.-.+.....+. .+.-|.+.+.-. ..+.|...+.+|++-||+.+.+-+-+|.
T Consensus 143 AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~ 222 (389)
T COG2956 143 ALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGR 222 (389)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhH
Confidence 6677778888899999999998888777653 344454443221 2267889999999999999999999999
Q ss_pred HHHHhCCHHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc
Q 007721 361 AKMEEGQIRAAISEIDRIIVFKLS--VDCLELRAWLFIAADDYESALRDTLALLALESNY 418 (591)
Q Consensus 361 ~l~~l~~~~eAl~~~~~al~l~p~--~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~ 418 (591)
+.+..|+|+.|+..+.++++.||+ +..+..+..+|.++|+.++.+..++++.+-.|+-
T Consensus 223 v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~ 282 (389)
T COG2956 223 VELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA 282 (389)
T ss_pred HHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence 999999999999999999999998 5666778889999999999999999999998863
No 113
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.06 E-value=1.7e-09 Score=99.22 Aligned_cols=81 Identities=12% Similarity=-0.023 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007721 335 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLA 413 (591)
Q Consensus 335 ~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~-~~~~~~r~~~~~~~g~~~~A~~d~~~al~ 413 (591)
++|...|+.+..+||.++..|+++|.++..+|++.+||..|.+|+.++|+ |..+.+.|.++..+|+.++|...|+.|+.
T Consensus 52 ~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 52 AGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88889999999999999999999999999999999999999999999996 89999999999999999999999999999
Q ss_pred cC
Q 007721 414 LE 415 (591)
Q Consensus 414 l~ 415 (591)
..
T Consensus 132 ~~ 133 (157)
T PRK15363 132 IC 133 (157)
T ss_pred Hh
Confidence 88
No 114
>PRK11906 transcriptional regulator; Provisional
Probab=99.06 E-value=6e-09 Score=110.15 Aligned_cols=145 Identities=12% Similarity=0.078 Sum_probs=103.0
Q ss_pred HHHHHHHHHHH---hcCCC-hHHHHHHHHHHHH---------cCCHHHHHHHHHHHHhcCCcchhhhhhchHhHHHHHHH
Q 007721 369 RAAISEIDRII---VFKLS-VDCLELRAWLFIA---------ADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLN 435 (591)
Q Consensus 369 ~eAl~~~~~al---~l~p~-~~~~~~r~~~~~~---------~g~~~~A~~d~~~al~l~P~~~~~~~~~~~~~~~~~l~ 435 (591)
+.|+..|.+|+ +++|+ ..++-.+++++.. ..+..+|++.-++|++++|+++. +....+.+.
T Consensus 275 ~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~------a~~~~g~~~ 348 (458)
T PRK11906 275 YRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGK------ILAIMGLIT 348 (458)
T ss_pred HHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHH------HHHHHHHHH
Confidence 34555555555 55554 3333334433222 23445667777777777777643 333333333
Q ss_pred hhhcccCchhhhhhhhhccccccccchHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHH
Q 007721 436 HHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLV 515 (591)
Q Consensus 436 ~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~ 515 (591)
....+++.| .+.++||++++|+.+.+|+..|.++..-|+.++|++.+++|++++|.-.-+-.
T Consensus 349 ~~~~~~~~a------------------~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~ 410 (458)
T PRK11906 349 GLSGQAKVS------------------HILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVV 410 (458)
T ss_pred HhhcchhhH------------------HHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHH
Confidence 333333333 66778888888888899999999999999999999999999999999999999
Q ss_pred hHHHH-HHHcCCHHHHHHHHHHh
Q 007721 516 YEGWI-LYDTGHREEALSRAEKS 537 (591)
Q Consensus 516 ~~G~~-l~~~g~~eeAl~~~e~a 537 (591)
..-|+ .|.....++|++.|-+-
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~ 433 (458)
T PRK11906 411 IKECVDMYVPNPLKNNIKLYYKE 433 (458)
T ss_pred HHHHHHHHcCCchhhhHHHHhhc
Confidence 99999 99999999999988653
No 115
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.04 E-value=2.2e-09 Score=122.91 Aligned_cols=155 Identities=11% Similarity=-0.041 Sum_probs=138.8
Q ss_pred HHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhh
Q 007721 344 ASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFH 422 (591)
Q Consensus 344 Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~-~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~ 422 (591)
+..++|.+..++..++.++...|++++|+..++.+++..|+ ...++..|.++...+++.+|..- +++.+-|+.
T Consensus 23 ~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~---- 96 (906)
T PRK14720 23 ANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQN---- 96 (906)
T ss_pred cccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccc----
Confidence 66789999999999999999999999999999999999997 78888899999999998887776 666666654
Q ss_pred hhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccchHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHH
Q 007721 423 GRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRL 502 (591)
Q Consensus 423 ~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~ 502 (591)
.+...+..+.+.+.-.|.+-.+++.+|.++.++|+.++|.+.|++
T Consensus 97 -----------------------------------~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer 141 (906)
T PRK14720 97 -----------------------------------LKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWER 141 (906)
T ss_pred -----------------------------------cchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 222336677777888999999999999999999999999999999
Q ss_pred HHhcCCchHHHHHhHHHHHHHcCCHHHHHHHHHHhhcc
Q 007721 503 ARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISI 540 (591)
Q Consensus 503 Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l 540 (591)
+++++|+|+.+++|+|-.+-.. ++++|.+.|.+|+..
T Consensus 142 ~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 142 LVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred HHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 9999999999999999999999 999999999999886
No 116
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.04 E-value=3.7e-08 Score=101.94 Aligned_cols=257 Identities=12% Similarity=0.011 Sum_probs=211.5
Q ss_pred HHHHHhhhHHhhh--ccHHHHHHHHHHHhhcc--ccchhhhhHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHhc-
Q 007721 257 LALHQLGCVMFER--EEYKDACYYFEAAADAG--HIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLY- 331 (591)
Q Consensus 257 ~a~~~lG~~~~~~--g~~~eA~~~f~~Al~~~--~~~a~~~la~~~~~~G~~~~A~~~~~~aI~~~~~~g~a~~~r~~y- 331 (591)
.+-.++...++.+ +++.+|..+-+.|+.++ .+.+..+-|.+.+..|+++.|.+.|..++.-......++++-|..
T Consensus 455 aaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~ 534 (840)
T KOG2003|consen 455 AAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTA 534 (840)
T ss_pred HHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccH
Confidence 4556777777664 47889998888888884 355777888899999999999999999998887777777777652
Q ss_pred ---CCcHHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCCHHHHHHH
Q 007721 332 ---NLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRD 407 (591)
Q Consensus 332 ---~~~~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~-~~~~~~r~~~~~~~g~~~~A~~d 407 (591)
+..++|+..|-+.-.+--++++.+..++++|--+.+..+||+-+-++..+-|+ |..+..+|.+|-+-||-.+|.++
T Consensus 535 e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~ 614 (840)
T KOG2003|consen 535 EALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQC 614 (840)
T ss_pred HHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhh
Confidence 34489999999988888899999999999999999999999999999999995 88888899999999999999999
Q ss_pred HHHHHhcCCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccchHHHHHHHHHcCCCCchhHhhhHHHH
Q 007721 408 TLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLL 487 (591)
Q Consensus 408 ~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~~P~~~~~~~~~g~~l 487 (591)
+-..-+.-|-++.-..-.+++ .-.-+.|++| +..+++|--+.|+.+.-....+.++
T Consensus 615 ~ydsyryfp~nie~iewl~ay------yidtqf~eka------------------i~y~ekaaliqp~~~kwqlmiasc~ 670 (840)
T KOG2003|consen 615 HYDSYRYFPCNIETIEWLAAY------YIDTQFSEKA------------------INYFEKAALIQPNQSKWQLMIASCF 670 (840)
T ss_pred hhhcccccCcchHHHHHHHHH------HHhhHHHHHH------------------HHHHHHHHhcCccHHHHHHHHHHHH
Confidence 998888888775433323333 3334556666 7889999999999999999999999
Q ss_pred HHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCC--HHHHHHHHHHh
Q 007721 488 LRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGH--REEALSRAEKS 537 (591)
Q Consensus 488 ~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~--~eeAl~~~e~a 537 (591)
.+.|.++.|...|+..-+.-|.+.+-+..+--+--++|- +.|=-.+.+++
T Consensus 671 rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~d~key~~klek~ 722 (840)
T KOG2003|consen 671 RRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLKDAKEYADKLEKA 722 (840)
T ss_pred HhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccchhHHHHHHHHHHH
Confidence 999999999999999999999999998888777767663 33444444444
No 117
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.04 E-value=1.6e-08 Score=109.06 Aligned_cols=236 Identities=17% Similarity=0.137 Sum_probs=173.2
Q ss_pred HHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHh--cCCc--HHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHH
Q 007721 298 KYKVGQQYSAYKLINSIISEHKPTGWMYQERSL--YNLG--REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAIS 373 (591)
Q Consensus 298 ~~~~G~~~~A~~~~~~aI~~~~~~g~a~~~r~~--y~~~--~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~ 373 (591)
.+..++|...+.....+++..|..|..+.-.|. ++.| ++|...-..+++-||....-|.-.|.++...++|+|||.
T Consensus 17 ~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 17 CYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHH
Confidence 355567777888889999999999888877664 4444 899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchh-hhhhchHhHHHHHHHhhhcccCchhhhhhhh
Q 007721 374 EIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMM-FHGRVSGDHLVKLLNHHVRSWSPADCWIKLY 451 (591)
Q Consensus 374 ~~~~al~l~p~-~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~-~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~ 451 (591)
+|+.|+.+.|+ ...+.-.+.+..+++|++.....=.+.+++.|.+.+ .+|-.-+..+.+.-.......+
T Consensus 97 cy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~--------- 167 (700)
T KOG1156|consen 97 CYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILE--------- 167 (700)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 99999999996 677888999999999999999999999999998765 3333334444332222222211
Q ss_pred hccccccccchHHHHHHHHHcCCCCc-----hhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCC
Q 007721 452 DRWSSVDDIGSLAVINQMLINDPGKS-----FLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGH 526 (591)
Q Consensus 452 ~~~~~~~~~~al~~~~~al~~~P~~~-----~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~ 526 (591)
.+.+-..-.|..- ++...+...+...|.+++|++.+..-=..--|.---.-.+|.++.++|+
T Consensus 168 -------------ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~ 234 (700)
T KOG1156|consen 168 -------------EFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQ 234 (700)
T ss_pred -------------HHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhh
Confidence 2222222112221 2233455566667777777665544322222223334567899999999
Q ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHhh
Q 007721 527 REEALSRAEKSISIERTFEAFFLKAYILA 555 (591)
Q Consensus 527 ~eeAl~~~e~ai~l~~~~~~~~~~~~~~~ 555 (591)
.|+|+..|+.-+..+|+.-+|+.......
T Consensus 235 lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~l 263 (700)
T KOG1156|consen 235 LEEAVKVYRRLLERNPDNLDYYEGLEKAL 263 (700)
T ss_pred HHhHHHHHHHHHhhCchhHHHHHHHHHHH
Confidence 99999999999999999999887654433
No 118
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=99.03 E-value=8.6e-09 Score=97.76 Aligned_cols=201 Identities=15% Similarity=0.114 Sum_probs=135.4
Q ss_pred HHHHHHHHhcCCc----HHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHH
Q 007721 322 GWMYQERSLYNLG----REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSV-DCLELRAWLFI 396 (591)
Q Consensus 322 g~a~~~r~~y~~~----~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~~-~~~~~r~~~~~ 396 (591)
+.++.+||.+... .-|.-||++++.+.|+.+.+++++|.-+...|+++.|.+.|+-.++++|.. -+..|||..+.
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y 144 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY 144 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee
Confidence 4555566554222 556679999999999999999999999999999999999999999999974 55678999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccchHHHHHHHHHcCCCC
Q 007721 397 AADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGK 476 (591)
Q Consensus 397 ~~g~~~~A~~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~~P~~ 476 (591)
--||+.-|.+|+.+--+-||+++. ..+---+-+..-+..+|. ....+|+-.++-..
T Consensus 145 Y~gR~~LAq~d~~~fYQ~D~~DPf-------R~LWLYl~E~k~dP~~A~-----------------tnL~qR~~~~d~e~ 200 (297)
T COG4785 145 YGGRYKLAQDDLLAFYQDDPNDPF-------RSLWLYLNEQKLDPKQAK-----------------TNLKQRAEKSDKEQ 200 (297)
T ss_pred ecCchHhhHHHHHHHHhcCCCChH-------HHHHHHHHHhhCCHHHHH-----------------HHHHHHHHhccHhh
Confidence 999999999999999999999852 110000111111122221 22444444444222
Q ss_pred chhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCch-------HHHHHhHHHHHHHcCCHHHHHHHHHHhhcc-cccHHHHH
Q 007721 477 SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE-------HERLVYEGWILYDTGHREEALSRAEKSISI-ERTFEAFF 548 (591)
Q Consensus 477 ~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~-------~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l-~~~~~~~~ 548 (591)
..|+- +-..+|... -...++++.+-..++ .|.++++|-.+...|+.++|...|.=||+- .=+|..++
T Consensus 201 -WG~~i---V~~yLgkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannVynfVE~R 275 (297)
T COG4785 201 -WGWNI---VEFYLGKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNVYNFVEHR 275 (297)
T ss_pred -hhHHH---HHHHHhhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhHHHHHHHH
Confidence 11222 223344433 112223333333332 678999999999999999999999999986 34565444
Q ss_pred HHH
Q 007721 549 LKA 551 (591)
Q Consensus 549 ~~~ 551 (591)
.-.
T Consensus 276 yA~ 278 (297)
T COG4785 276 YAL 278 (297)
T ss_pred HHH
Confidence 333
No 119
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.02 E-value=3.3e-09 Score=100.56 Aligned_cols=66 Identities=11% Similarity=0.096 Sum_probs=39.5
Q ss_pred hHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCC--------------HHHHHHHHHHhhcccccH
Q 007721 479 LRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGH--------------REEALSRAEKSISIERTF 544 (591)
Q Consensus 479 ~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~--------------~eeAl~~~e~ai~l~~~~ 544 (591)
+++++|.++.++|++++|+..+++|++..|++..++..+|+++...|+ +++|++.+++++.++|+.
T Consensus 74 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 74 ILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 455555566666666666666666666666666666666666655555 556666666666666654
No 120
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.00 E-value=5.6e-09 Score=98.53 Aligned_cols=121 Identities=14% Similarity=0.089 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhhchHhHHHHHHHhhhcccCch
Q 007721 368 IRAAISEIDRIIVFKLS---VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPA 444 (591)
Q Consensus 368 ~~eAl~~~~~al~l~p~---~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a 444 (591)
+..+.+.+.+.++.++. ...++..|.++..+|++++|+..|++++++.|+.
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~-------------------------- 68 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDP-------------------------- 68 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccc--------------------------
Confidence 45555555555555552 3455667788888888888888888888887653
Q ss_pred hhhhhhhhccccccccchHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHH--
Q 007721 445 DCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILY-- 522 (591)
Q Consensus 445 ~~~~~l~~~~~~~~~~~al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~-- 522 (591)
+..+.+|+++|.++..+|++++|+..+++|++++|.+++.+.++|.++.
T Consensus 69 -----------------------------~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~ 119 (168)
T CHL00033 69 -----------------------------YDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYR 119 (168)
T ss_pred -----------------------------hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 0113467888889999999999999999999999999888888888888
Q ss_pred -----HcCCHHHH-------HHHHHHhhccccc
Q 007721 523 -----DTGHREEA-------LSRAEKSISIERT 543 (591)
Q Consensus 523 -----~~g~~eeA-------l~~~e~ai~l~~~ 543 (591)
.+|++++| +..|++++..+|.
T Consensus 120 ~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~ 152 (168)
T CHL00033 120 GEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPG 152 (168)
T ss_pred hHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 77777644 4444555555553
No 121
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.99 E-value=1.1e-09 Score=115.50 Aligned_cols=101 Identities=19% Similarity=0.102 Sum_probs=84.8
Q ss_pred HcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHH---HHhHHHHHHHcCCHHHHHHHHHHhhcc-cccHHH
Q 007721 471 INDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHER---LVYEGWILYDTGHREEALSRAEKSISI-ERTFEA 546 (591)
Q Consensus 471 ~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a---~~~~G~~l~~~g~~eeAl~~~e~ai~l-~~~~~~ 546 (591)
+-+|+++.+|+|+|.+|..+|++++|+..|++|++++|+++++ ++|+|.+|..+|++++|++.+++||++ +|.|.
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~~f~- 147 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNLKFS- 147 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcchhHH-
Confidence 3689999999999999999999999999999999999999976 999999999999999999999999998 55443
Q ss_pred HHHHHHHhhhcCCCCC-chhHHHHHHHHHhcC
Q 007721 547 FFLKAYILADTNLDPE-SSTYVIQLLEEALRC 577 (591)
Q Consensus 547 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 577 (591)
++..|..+||= .....-+|+|++-++
T Consensus 148 -----~i~~DpdL~plR~~pef~eLlee~rk~ 174 (453)
T PLN03098 148 -----TILNDPDLAPFRASPEFKELQEEARKG 174 (453)
T ss_pred -----HHHhCcchhhhcccHHHHHHHHHHHHh
Confidence 45677766543 234455667766554
No 122
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.99 E-value=3.4e-08 Score=108.59 Aligned_cols=201 Identities=14% Similarity=-0.006 Sum_probs=137.8
Q ss_pred CcHHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCChHHHH-HHHHHHH-----HcCCHHHHHH
Q 007721 333 LGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLE-LRAWLFI-----AADDYESALR 406 (591)
Q Consensus 333 ~~~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~~~~~~-~r~~~~~-----~~g~~~~A~~ 406 (591)
..++|++.+++....=++-...+-.||.+++.+|++++|...|+..|..||+...++ ....+.. ..++.+.-.+
T Consensus 19 ~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~ 98 (517)
T PF12569_consen 19 DYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLE 98 (517)
T ss_pred CHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHH
Confidence 338899999888888888888888899999999999999999999999999654433 3333331 1235677788
Q ss_pred HHHHHHhcCCcchhh--------hhh-----ch----------HhHHHHHHHhhhcccCchhhhhhhhhccccccccchH
Q 007721 407 DTLALLALESNYMMF--------HGR-----VS----------GDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSL 463 (591)
Q Consensus 407 d~~~al~l~P~~~~~--------~~~-----~~----------~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al 463 (591)
-|+...+..|..... .|- .. +-.+-..|...-.+.+++.+..++..
T Consensus 99 ~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~----------- 167 (517)
T PF12569_consen 99 LYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVE----------- 167 (517)
T ss_pred HHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHH-----------
Confidence 888888888864321 000 00 11111111112122222221111111
Q ss_pred HHHHHHHH------------cCCCCc--hhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHH
Q 007721 464 AVINQMLI------------NDPGKS--FLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREE 529 (591)
Q Consensus 464 ~~~~~al~------------~~P~~~--~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~ee 529 (591)
.+...++ ..|-.. .+++.+|-.+..+|++++|+..+++||++.|..+|.|+..|-+|-..|++++
T Consensus 168 -~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~ 246 (517)
T PF12569_consen 168 -EYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKE 246 (517)
T ss_pred -HHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHH
Confidence 2222222 123333 3558889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccccHH
Q 007721 530 ALSRAEKSISIERTFE 545 (591)
Q Consensus 530 Al~~~e~ai~l~~~~~ 545 (591)
|....+.|-.+++..-
T Consensus 247 Aa~~~~~Ar~LD~~DR 262 (517)
T PF12569_consen 247 AAEAMDEARELDLADR 262 (517)
T ss_pred HHHHHHHHHhCChhhH
Confidence 9999999999987654
No 123
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.97 E-value=1.1e-08 Score=89.63 Aligned_cols=107 Identities=14% Similarity=0.095 Sum_probs=71.3
Q ss_pred HHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhhchHh
Q 007721 353 FPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS----VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGD 428 (591)
Q Consensus 353 ~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~----~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~~~~ 428 (591)
..++.+|..+...|++++|+..|++++..+|+ +..++.+|.++...|++++|+..|++++..+|++
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---------- 72 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKS---------- 72 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCC----------
Confidence 45677777777777777777777777777664 2345566777777777777777777777776654
Q ss_pred HHHHHHHhhhcccCchhhhhhhhhccccccccchHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCC
Q 007721 429 HLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSS 508 (591)
Q Consensus 429 ~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p 508 (591)
|..+.++++.|.++..+|++++|+..++++++..|
T Consensus 73 ---------------------------------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 73 ---------------------------------------------PKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred ---------------------------------------------CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCc
Confidence 12234566666666777777777777777777777
Q ss_pred chHHHH
Q 007721 509 SEHERL 514 (591)
Q Consensus 509 ~~~~a~ 514 (591)
++..+.
T Consensus 108 ~~~~~~ 113 (119)
T TIGR02795 108 GSSAAK 113 (119)
T ss_pred CChhHH
Confidence 666543
No 124
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.97 E-value=1.7e-09 Score=85.03 Aligned_cols=65 Identities=20% Similarity=0.290 Sum_probs=60.6
Q ss_pred hhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHHHHHHHHhhcccccHH
Q 007721 481 FRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE 545 (591)
Q Consensus 481 ~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l~~~~~ 545 (591)
+.+|..+...|++++|++.|+++++.+|+++++++.+|++++.+|++++|+..|++++++.|+.+
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999864
No 125
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.96 E-value=1e-07 Score=109.55 Aligned_cols=232 Identities=11% Similarity=-0.028 Sum_probs=158.0
Q ss_pred HHHHHHHhhhHHhhhccHHHHHHHHHHHhhcccc--chhhhhHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHhcC
Q 007721 255 RMLALHQLGCVMFEREEYKDACYYFEAAADAGHI--YSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYN 332 (591)
Q Consensus 255 ~~~a~~~lG~~~~~~g~~~eA~~~f~~Al~~~~~--~a~~~la~~~~~~G~~~~A~~~~~~aI~~~~~~g~a~~~r~~y~ 332 (591)
+..++..+...+...+++++|++..+.+++..|. ..++..|.+++..+++..+... +++..-+...
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~---------- 97 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNL---------- 97 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccccc----------
Confidence 3567788888888999999999999988888553 4677778888888886555433 3333322110
Q ss_pred CcHHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007721 333 LGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLAL 411 (591)
Q Consensus 333 ~~~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~-~~~~~~r~~~~~~~g~~~~A~~d~~~a 411 (591)
..++.+++-+.+--.|.+-+|++.+|.+|-.+|+.++|.+.|+++|+++|+ +.++.+.|..+... ++++|+..+.+|
T Consensus 98 -~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA 175 (906)
T PRK14720 98 -KWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKA 175 (906)
T ss_pred -chhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence 024556666666677888899999999999999999999999999999995 78888899988888 999999999999
Q ss_pred HhcCCcchhhhhhchHhHHHHHHHhhhcccCch-hhhhhhhhccccccccchHHHHHHHHHcCCC---CchhHhhhHHHH
Q 007721 412 LALESNYMMFHGRVSGDHLVKLLNHHVRSWSPA-DCWIKLYDRWSSVDDIGSLAVINQMLINDPG---KSFLRFRQSLLL 487 (591)
Q Consensus 412 l~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a-~~~~~l~~~~~~~~~~~al~~~~~al~~~P~---~~~~~~~~g~~l 487 (591)
++..=+. +++..+ +.|..+.+. ..+|++-+-.+.+.+.-.-+ -++++.-.=..+
T Consensus 176 V~~~i~~--------------------kq~~~~~e~W~k~~~~--~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y 233 (906)
T PRK14720 176 IYRFIKK--------------------KQYVGIEEIWSKLVHY--NSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPY 233 (906)
T ss_pred HHHHHhh--------------------hcchHHHHHHHHHHhc--CcccchHHHHHHHHHHhhhccchhHHHHHHHHHHH
Confidence 9873322 111111 112222222 12333323333333332222 111222222445
Q ss_pred HHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHH
Q 007721 488 LRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILY 522 (591)
Q Consensus 488 ~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~ 522 (591)
-..+++.+++..++.+|+++|+|..|...+..++-
T Consensus 234 ~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 234 KALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 55788889999999999999999888887777765
No 126
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.96 E-value=5.1e-09 Score=107.30 Aligned_cols=254 Identities=16% Similarity=0.064 Sum_probs=184.3
Q ss_pred chhHHHHHHHHhhcchhhhHHHHH-HHHhhhHHhhhccHHHHHHHHHHHhh----c----cccchhhhhHHHHHHhCChH
Q 007721 235 SNTTVMLLERLGECSTERWQRMLA-LHQLGCVMFEREEYKDACYYFEAAAD----A----GHIYSLAGLARAKYKVGQQY 305 (591)
Q Consensus 235 ~~~~v~lLe~~~~~~~~~~~~~~a-~~~lG~~~~~~g~~~eA~~~f~~Al~----~----~~~~a~~~la~~~~~~G~~~ 305 (591)
....+.+|+.+++...+.+....| |.++|.+|+-.++|.+|.++..--|. + +.+-+..++|..+-.+|.++
T Consensus 33 craGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fd 112 (639)
T KOG1130|consen 33 CRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFD 112 (639)
T ss_pred hhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccc
Confidence 445788999988877776655555 88999999999999999987542222 1 34557788999999999999
Q ss_pred HHHHHHHHHHHh-------------cCCCHHHHHHHHhcC----------CcHHHHHHHHHHHHcCCCC-----------
Q 007721 306 SAYKLINSIISE-------------HKPTGWMYQERSLYN----------LGREKIVDLNYASELDPTL----------- 351 (591)
Q Consensus 306 ~A~~~~~~aI~~-------------~~~~g~a~~~r~~y~----------~~~eA~~dl~~Ai~LdP~~----------- 351 (591)
+|+-+..+-+.. .-++|.+|..+|... .++++..+|+.|.++--.+
T Consensus 113 eA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~ 192 (639)
T KOG1130|consen 113 EALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRL 192 (639)
T ss_pred hHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 998776654332 135666776665421 1255666677666553332
Q ss_pred --hHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCCh-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhh
Q 007721 352 --SFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSV-------DCLELRAWLFIAADDYESALRDTLALLALESNYMMFH 422 (591)
Q Consensus 352 --~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~~-------~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~ 422 (591)
-.+|.++|+.|.-+|+|+.||..-..=|++.-.. .++.+.|.++.-+|.++.|++.|.+.+.|.-.-
T Consensus 193 aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAiel---- 268 (639)
T KOG1130|consen 193 AQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIEL---- 268 (639)
T ss_pred hhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHh----
Confidence 3678899999999999999999888877775431 235567789999999999999999987665321
Q ss_pred hhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccchHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHH
Q 007721 423 GRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRL 502 (591)
Q Consensus 423 ~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~ 502 (591)
+++ ..+ +...+.+|+++..+..++.|+...++
T Consensus 269 ----------------------------g~r---------------~vE-----AQscYSLgNtytll~e~~kAI~Yh~r 300 (639)
T KOG1130|consen 269 ----------------------------GNR---------------TVE-----AQSCYSLGNTYTLLKEVQKAITYHQR 300 (639)
T ss_pred ----------------------------cch---------------hHH-----HHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 111 000 12356778888888888888888877
Q ss_pred HHhcCC------chHHHHHhHHHHHHHcCCHHHHHHHHHHhhcc
Q 007721 503 ARNHSS------SEHERLVYEGWILYDTGHREEALSRAEKSISI 540 (591)
Q Consensus 503 Al~l~p------~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l 540 (591)
=+.+.- -...+.|.+|..+-.+|..++|+-..++.+++
T Consensus 301 HLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 301 HLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 665543 24667899999999999999999888888775
No 127
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.96 E-value=8e-09 Score=90.52 Aligned_cols=105 Identities=15% Similarity=0.100 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccchHHH
Q 007721 386 DCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAV 465 (591)
Q Consensus 386 ~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~ 465 (591)
+.++..|..+...|++++|+..|+++++.+|++
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----------------------------------------------- 35 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKS----------------------------------------------- 35 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc-----------------------------------------------
Confidence 456788889999999999999999999988875
Q ss_pred HHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCch---HHHHHhHHHHHHHcCCHHHHHHHHHHhhcccc
Q 007721 466 INQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE---HERLVYEGWILYDTGHREEALSRAEKSISIER 542 (591)
Q Consensus 466 ~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~---~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l~~ 542 (591)
|..+.+++.+|.++.+.|++++|+..+++++...|++ +++++.+|+++..+|++++|+..+++++...|
T Consensus 36 --------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 36 --------TYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred --------cccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCc
Confidence 2234678889999999999999999999999999986 78899999999999999999999999999999
Q ss_pred cHH
Q 007721 543 TFE 545 (591)
Q Consensus 543 ~~~ 545 (591)
+..
T Consensus 108 ~~~ 110 (119)
T TIGR02795 108 GSS 110 (119)
T ss_pred CCh
Confidence 876
No 128
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.95 E-value=1.9e-06 Score=88.93 Aligned_cols=275 Identities=15% Similarity=0.111 Sum_probs=149.7
Q ss_pred HHHHHHHhhhHHhhhccHHHHHHHHHHHhhcccc--chhhhhHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHhcC
Q 007721 255 RMLALHQLGCVMFEREEYKDACYYFEAAADAGHI--YSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYN 332 (591)
Q Consensus 255 ~~~a~~~lG~~~~~~g~~~eA~~~f~~Al~~~~~--~a~~~la~~~~~~G~~~~A~~~~~~aI~~~~~~g~a~~~r~~y~ 332 (591)
++....+-|...+.-|+|.+|+....++-+-++. -++..-+++-.++|+.+.+-.
T Consensus 83 ra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~----------------------- 139 (400)
T COG3071 83 RARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANR----------------------- 139 (400)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHH-----------------------
Confidence 3445556788888899999999888876665433 233444556666666654444
Q ss_pred CcHHHHHHHHHHHHcCCCC-hHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007721 333 LGREKIVDLNYASELDPTL-SFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLA 410 (591)
Q Consensus 333 ~~~eA~~dl~~Ai~LdP~~-~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~-~~~~~~r~~~~~~~g~~~~A~~d~~~ 410 (591)
.+.+|.++.|+. ...+..|+.++...|++..|.+..+.+++..|. +..+..+..+|...|+|.+...-..+
T Consensus 140 -------yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~ 212 (400)
T COG3071 140 -------YLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPK 212 (400)
T ss_pred -------HHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 445555552222 334556666666677777777777777777764 55555555666777777666665555
Q ss_pred HHhc---CCc-chhhhhhchHhHHHHHHHhhhcccCch---hhhhhhhhcccc--------------ccccc-hHHHHHH
Q 007721 411 LLAL---ESN-YMMFHGRVSGDHLVKLLNHHVRSWSPA---DCWIKLYDRWSS--------------VDDIG-SLAVINQ 468 (591)
Q Consensus 411 al~l---~P~-~~~~~~~~~~~~~~~~l~~~~~~~~~a---~~~~~l~~~~~~--------------~~~~~-al~~~~~ 468 (591)
.-+- .+. +..+... +- .+.++.....-... ++|.++-..... .++.. |...+.+
T Consensus 213 L~ka~~l~~~e~~~le~~-a~---~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~ 288 (400)
T COG3071 213 LRKAGLLSDEEAARLEQQ-AW---EGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIED 288 (400)
T ss_pred HHHccCCChHHHHHHHHH-HH---HHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHH
Confidence 4442 221 1111110 00 00111111100000 111111111111 12222 3334444
Q ss_pred HHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHHHHHHHHhhcccccHHHHH
Q 007721 469 MLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFF 548 (591)
Q Consensus 469 al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l~~~~~~~~ 548 (591)
+|...=. +.++ +=.--.+.++++.=+...++.++..|+++..+.++|..+++.+.+.+|=..+|.|++.+||-+.+-
T Consensus 289 ~Lk~~~D-~~L~--~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~ 365 (400)
T COG3071 289 ALKRQWD-PRLC--RLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYA 365 (400)
T ss_pred HHHhccC-hhHH--HHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHH
Confidence 4433211 1111 111112344444455555566667788888888888888888888888888888888888888888
Q ss_pred HHHHHhhhcCCCCCchhHH
Q 007721 549 LKAYILADTNLDPESSTYV 567 (591)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~ 567 (591)
..|++++-.. +|+-+.-|
T Consensus 366 ~la~~~~~~g-~~~~A~~~ 383 (400)
T COG3071 366 ELADALDQLG-EPEEAEQV 383 (400)
T ss_pred HHHHHHHHcC-ChHHHHHH
Confidence 8888886654 45544433
No 129
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.94 E-value=9.4e-09 Score=113.48 Aligned_cols=125 Identities=15% Similarity=0.084 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHcCCCChHHHHhHHHHHHHhC--------CHHHHHHHHHHHHhc--CC-ChHHHHHHHHHHHHcCCHHH
Q 007721 335 REKIVDLNYASELDPTLSFPYKYRAVAKMEEG--------QIRAAISEIDRIIVF--KL-SVDCLELRAWLFIAADDYES 403 (591)
Q Consensus 335 ~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~--------~~~eAl~~~~~al~l--~p-~~~~~~~r~~~~~~~g~~~~ 403 (591)
..|+..|++|+++||+++.+|-.++.++.... +..+|.....+++.+ +| ++..+...|......|++++
T Consensus 359 ~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~ 438 (517)
T PRK10153 359 NKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDE 438 (517)
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHH
Confidence 56777888888888888888888777765532 234555556665554 33 24555566666666677777
Q ss_pred HHHHHHHHHhcCCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccchHHHHHHHHHcCCCCchhHhhh
Q 007721 404 ALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQ 483 (591)
Q Consensus 404 A~~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~~P~~~~~~~~~ 483 (591)
|.+.+++|++++|+ ..+|+.+
T Consensus 439 A~~~l~rAl~L~ps-----------------------------------------------------------~~a~~~l 459 (517)
T PRK10153 439 AYQAINKAIDLEMS-----------------------------------------------------------WLNYVLL 459 (517)
T ss_pred HHHHHHHHHHcCCC-----------------------------------------------------------HHHHHHH
Confidence 77766666666663 4678889
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHH
Q 007721 484 SLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEG 518 (591)
Q Consensus 484 g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G 518 (591)
|.++...|++++|++.|++|++++|.++.-++-.-
T Consensus 460 G~~~~~~G~~~eA~~~~~~A~~L~P~~pt~~~~~~ 494 (517)
T PRK10153 460 GKVYELKGDNRLAADAYSTAFNLRPGENTLYWIEN 494 (517)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCchHHHHHh
Confidence 99999999999999999999999999886444333
No 130
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.94 E-value=1.4e-08 Score=96.18 Aligned_cols=71 Identities=13% Similarity=0.168 Sum_probs=63.5
Q ss_pred CCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcch
Q 007721 349 PTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS----VDCLELRAWLFIAADDYESALRDTLALLALESNYM 419 (591)
Q Consensus 349 P~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~----~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~ 419 (591)
|..+.+|+++|..+...|++++|+..|++++++.|+ ...+.++|.++..+|++++|+..|+++++++|++.
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 106 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQP 106 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Confidence 456778999999999999999999999999998875 24677899999999999999999999999999874
No 131
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.92 E-value=1.9e-08 Score=88.15 Aligned_cols=85 Identities=19% Similarity=0.187 Sum_probs=78.1
Q ss_pred cHHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCC---h--HHHHHHHHHHHHcCCHHHHHHHH
Q 007721 334 GREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS---V--DCLELRAWLFIAADDYESALRDT 408 (591)
Q Consensus 334 ~~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~---~--~~~~~r~~~~~~~g~~~~A~~d~ 408 (591)
.++|++-|.+++++-|..+.+|+||+.++.-+|+.++|+.++++|+++.-+ . .++.-||.+|..+|+.+.|.+||
T Consensus 59 Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DF 138 (175)
T KOG4555|consen 59 LDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADF 138 (175)
T ss_pred hHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhH
Confidence 389999999999999999999999999999999999999999999999653 2 33566999999999999999999
Q ss_pred HHHHhcCCcc
Q 007721 409 LALLALESNY 418 (591)
Q Consensus 409 ~~al~l~P~~ 418 (591)
.+|.+|...+
T Consensus 139 e~AA~LGS~F 148 (175)
T KOG4555|consen 139 EAAAQLGSKF 148 (175)
T ss_pred HHHHHhCCHH
Confidence 9999999877
No 132
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.90 E-value=1.8e-06 Score=93.36 Aligned_cols=280 Identities=11% Similarity=-0.044 Sum_probs=214.4
Q ss_pred chhHHHHHHHHhhcchhhhHHHHHHHHhhhHHhhhccHHHHHHHHHHHhhccc-cchhhhhHHHHHHhCChHHHHHHHHH
Q 007721 235 SNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGH-IYSLAGLARAKYKVGQQYSAYKLINS 313 (591)
Q Consensus 235 ~~~~v~lLe~~~~~~~~~~~~~~a~~~lG~~~~~~g~~~eA~~~f~~Al~~~~-~~a~~~la~~~~~~G~~~~A~~~~~~ 313 (591)
...+..++..+....+.. ..-+.---.+.++..+++.|...|.+|-.+.+ ...+...+.+...+|..++|...+++
T Consensus 600 v~~ar~il~~af~~~pns---eeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe 676 (913)
T KOG0495|consen 600 VPAARVILDQAFEANPNS---EEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEE 676 (913)
T ss_pred cHHHHHHHHHHHHhCCCc---HHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHH
Confidence 334555666655544432 12222233455677899999999999887744 34555566677788999999999999
Q ss_pred HHHhcCCCHHHHHHHHhcC----CcHHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCC-hHHH
Q 007721 314 IISEHKPTGWMYQERSLYN----LGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCL 388 (591)
Q Consensus 314 aI~~~~~~g~a~~~r~~y~----~~~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~-~~~~ 388 (591)
++..+|.+...|...|+.. ..+.|...|.+-++..|....-|..++.+--..|+.-.|-..++|+.--||. ...|
T Consensus 677 ~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lw 756 (913)
T KOG0495|consen 677 ALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLW 756 (913)
T ss_pred HHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhH
Confidence 9999999888777776532 2278899999999999999999999999999999999999999999999996 4544
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccchHHHHHH
Q 007721 389 ELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQ 468 (591)
Q Consensus 389 ~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~ 468 (591)
...-..-+..|..+.|.....+||+-.|+. +-.....--+....++-+. ...
T Consensus 757 le~Ir~ElR~gn~~~a~~lmakALQecp~s------g~LWaEaI~le~~~~rkTk----------------------s~D 808 (913)
T KOG0495|consen 757 LESIRMELRAGNKEQAELLMAKALQECPSS------GLLWAEAIWLEPRPQRKTK----------------------SID 808 (913)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCcc------chhHHHHHHhccCcccchH----------------------HHH
Confidence 445567889999999999999999999986 3333322222222333222 356
Q ss_pred HHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHHHHHHHHhhcccccHH
Q 007721 469 MLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE 545 (591)
Q Consensus 469 al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l~~~~~ 545 (591)
||...-++++...-.|.++..-..++.|..+|.+|+..+|+++++..+.=--....|.-+.-...|.+-..-.|...
T Consensus 809 ALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG 885 (913)
T KOG0495|consen 809 ALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHG 885 (913)
T ss_pred HHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCC
Confidence 78888999999999999999999999999999999999999999987766666777876666667776666666554
No 133
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.90 E-value=2.1e-07 Score=90.55 Aligned_cols=186 Identities=17% Similarity=0.109 Sum_probs=147.4
Q ss_pred HcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhh
Q 007721 346 ELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGR 424 (591)
Q Consensus 346 ~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~-~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~ 424 (591)
.+.|+-...|-....+.+.-|+.+-|..++++.-.--|+ +.-.-.-|..+...|.+++|+..|+..++=||.+...+-|
T Consensus 46 ~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KR 125 (289)
T KOG3060|consen 46 ALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKR 125 (289)
T ss_pred ccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHH
Confidence 466666677777788999999999999999996655585 5655667889999999999999999999999987433332
Q ss_pred chHhHHHHHHHhhhcccCchhhhhhhhhccccccccchHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHH
Q 007721 425 VSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLAR 504 (591)
Q Consensus 425 ~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al 504 (591)
.-+. ...... ...++.-++.=|+.-|++.++|.-+++++.-+|.++.|.=+|+..+
T Consensus 126 KlAi------lka~GK------------------~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 126 KLAI------LKAQGK------------------NLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred HHHH------HHHcCC------------------cHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 2211 111111 1123667788899999999999999999999999999999999999
Q ss_pred hcCCchHHHHHhHHHHHHHcCC---HHHHHHHHHHhhcccc-cHHHH---HHHHHHhh
Q 007721 505 NHSSSEHERLVYEGWILYDTGH---REEALSRAEKSISIER-TFEAF---FLKAYILA 555 (591)
Q Consensus 505 ~l~p~~~~a~~~~G~~l~~~g~---~eeAl~~~e~ai~l~~-~~~~~---~~~~~~~~ 555 (591)
-++|.++--+--+|-++|.+|- ++-|...|++|+++.| ++-+. ++.|-+++
T Consensus 182 l~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la 239 (289)
T KOG3060|consen 182 LIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSALA 239 (289)
T ss_pred HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHH
Confidence 9999999999999999999985 5678899999999999 66554 47777777
No 134
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.89 E-value=1.5e-08 Score=103.94 Aligned_cols=246 Identities=13% Similarity=0.067 Sum_probs=163.6
Q ss_pred hhhccHHHHHHHHHHHhhccc---cchhhhhHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHhcCCc----HHHHH
Q 007721 267 FEREEYKDACYYFEAAADAGH---IYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLG----REKIV 339 (591)
Q Consensus 267 ~~~g~~~eA~~~f~~Al~~~~---~~a~~~la~~~~~~G~~~~A~~~~~~aI~~~~~~g~a~~~r~~y~~~----~eA~~ 339 (591)
+-.|.|..++..++ .....+ ......+.|.+..+|++...+....+. ..|.+... .....|... +..+.
T Consensus 12 fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~--~~~~l~av-~~la~y~~~~~~~e~~l~ 87 (290)
T PF04733_consen 12 FYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKS--SSPELQAV-RLLAEYLSSPSDKESALE 87 (290)
T ss_dssp HCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TT--SSCCCHHH-HHHHHHHCTSTTHHCHHH
T ss_pred HHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccC--CChhHHHH-HHHHHHHhCccchHHHHH
Confidence 34577877776554 111221 224556788899999877665444321 12333222 222222211 34555
Q ss_pred HHHHHHHcC--CCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Q 007721 340 DLNYASELD--PTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESN 417 (591)
Q Consensus 340 dl~~Ai~Ld--P~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~ 417 (591)
.+...+.-. +.+.....--|.++...|++++|+..+.+. .+.++...+-.++..++|.+.|..-++..-+.+.|
T Consensus 88 ~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD 163 (290)
T PF04733_consen 88 ELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDED 163 (290)
T ss_dssp HHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCC
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 554432222 233445556778888899999999888765 34676667778999999999999999999999987
Q ss_pred chhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccc-hHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHH
Q 007721 418 YMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIG-SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAA 496 (591)
Q Consensus 418 ~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~-al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA 496 (591)
.+ ..+ .|.+|+.++.-- +.+. |.-+|+..-+..|.++...+.++.+...+|+++||
T Consensus 164 ~~-------l~q-------------La~awv~l~~g~---e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eA 220 (290)
T PF04733_consen 164 SI-------LTQ-------------LAEAWVNLATGG---EKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEA 220 (290)
T ss_dssp HH-------HHH-------------HHHHHHHHHHTT---TCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHH
T ss_pred HH-------HHH-------------HHHHHHHHHhCc---hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHH
Confidence 52 111 267788877653 3344 68899998888889999999999999999999999
Q ss_pred HHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHHHHH-HHHhhccccc
Q 007721 497 MRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSR-AEKSISIERT 543 (591)
Q Consensus 497 ~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~-~e~ai~l~~~ 543 (591)
...+++|++.+|++++.+.|+..+-+.+|.-.++... ..+.-...|+
T Consensus 221 e~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~ 268 (290)
T PF04733_consen 221 EELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPN 268 (290)
T ss_dssp HHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTT
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999555544 4444445665
No 135
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.89 E-value=3.8e-08 Score=92.89 Aligned_cols=84 Identities=12% Similarity=0.032 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHcCCCC--hHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCC----hHHHHHHHHHHHHcCCHHHHHHHHH
Q 007721 336 EKIVDLNYASELDPTL--SFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS----VDCLELRAWLFIAADDYESALRDTL 409 (591)
Q Consensus 336 eA~~dl~~Ai~LdP~~--~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~----~~~~~~r~~~~~~~g~~~~A~~d~~ 409 (591)
.+...+.+.++.++.. +..|++.|.++...|++++|+..|++++++.|+ +..+.+.|.++..+|++++|+..|+
T Consensus 17 ~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~ 96 (168)
T CHL00033 17 IVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYF 96 (168)
T ss_pred cchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3344454555566666 677799999999999999999999999999775 2367889999999999999999999
Q ss_pred HHHhcCCcch
Q 007721 410 ALLALESNYM 419 (591)
Q Consensus 410 ~al~l~P~~~ 419 (591)
++++++|.+.
T Consensus 97 ~Al~~~~~~~ 106 (168)
T CHL00033 97 QALERNPFLP 106 (168)
T ss_pred HHHHhCcCcH
Confidence 9999999873
No 136
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.85 E-value=9.5e-09 Score=103.85 Aligned_cols=141 Identities=18% Similarity=0.182 Sum_probs=115.8
Q ss_pred eEEEEcCeEEEhhHHHHhhcCHHHHHhhcCCCCCCC-Cc-eeEecCCCCCHHHHHHHHHHHhcCCCCCCChhHHHHHHHH
Q 007721 57 VTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESK-RK-TIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIVLELLSF 134 (591)
Q Consensus 57 V~f~v~g~~~~aHr~iLaa~S~yF~amf~~~~~Es~-~~-~I~l~~~~vs~~~~~~ll~ylYtg~~~~~~~~~v~~lL~~ 134 (591)
|.+.+++ +.|||+.++ .|.+||+.||.|+|.|+. .. ...++-+..+..+.+.+++|+|+++.+ +.++.+.+++-+
T Consensus 295 iql~~~~-RyP~hla~i-~R~eyfk~mf~g~f~e~s~n~~~p~lslp~~~~~vveI~lr~lY~d~td-i~~~~A~dvll~ 371 (516)
T KOG0511|consen 295 IQLPEED-RYPAHLARI-LRVEYFKSMFVGDFIESSVNDTRPGLSLPSLADVVVEIDLRNLYCDQTD-IIFDVASDVLLF 371 (516)
T ss_pred ccccccc-cccHHHHHH-HHHHHHHHHhccchhhhcCCccccccccchHHHHHHHHHHHHhhccccc-chHHHHhhHHHH
Confidence 4455444 699999999 789999999999999964 22 333333778889999999999999999 999999999999
Q ss_pred HhhhChH--H-HHHHHHHHHHhh---cCCHHhHHHHHHHHHHhChHHHHHHHHHHHHhhhHhhhCCccccccc
Q 007721 135 ANRFCCE--E-MKSACDAHLASL---VGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVMKIF 201 (591)
Q Consensus 135 A~~~~i~--~-L~~~C~~~L~~~---i~~~~n~~~ll~~A~~~~~~~L~~~c~~~i~~n~~~v~~~~~f~~l~ 201 (591)
|+++-+. . ||.+...-+.+. ++ .-|++.|++++.......|...+..|+.+|+...+.+|++.+.+
T Consensus 372 ad~lal~~dr~Lkt~as~~itq~~e~id-~y~V~dIl~~~wd~~~~rlEqfa~~~~a~hl~~l~~dPe~~~~~ 443 (516)
T KOG0511|consen 372 ADKLALADDRLLKTAASAEITQWLELID-MYGVLDILEYCWDLVACRLEQFAETHEARHLLLLLPDPEGDSSL 443 (516)
T ss_pred hhHhhhhhhhhhhhhhhHHHHHHHHHHH-hhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCCchhhHHH
Confidence 9999775 3 565555555443 34 45799999999999999999999999999999999999997764
No 137
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.84 E-value=7.1e-07 Score=84.15 Aligned_cols=196 Identities=20% Similarity=0.196 Sum_probs=150.4
Q ss_pred HHHHHHHHHHHH--cCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCCh-HHHHHHHH-HHHHcCCHHHHHHHHHH
Q 007721 335 REKIVDLNYASE--LDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSV-DCLELRAW-LFIAADDYESALRDTLA 410 (591)
Q Consensus 335 ~eA~~dl~~Ai~--LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~~-~~~~~r~~-~~~~~g~~~~A~~d~~~ 410 (591)
..+...+..+.. ..|.....+...|......+++.+|+..+.+++..++.. ......+. ++...|+++.|+..|.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 155 (291)
T COG0457 76 EEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEK 155 (291)
T ss_pred HHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 555666666665 788888888899999999999999999999999887764 33444555 88999999999999999
Q ss_pred HHhcCCc-chhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccc-hHHHHHHHHHcCCC-CchhHhhhHHHH
Q 007721 411 LLALESN-YMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIG-SLAVINQMLINDPG-KSFLRFRQSLLL 487 (591)
Q Consensus 411 al~l~P~-~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~-al~~~~~al~~~P~-~~~~~~~~g~~l 487 (591)
++.++|. . ................ .+.. ++..+.+++...|. ....+.+.+..+
T Consensus 156 ~~~~~~~~~----~~~~~~~~~~~~~~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (291)
T COG0457 156 ALELDPELN----ELAEALLALGALLEAL-------------------GRYEEALELLEKALKLNPDDDAEALLNLGLLY 212 (291)
T ss_pred HHhcCCCcc----chHHHHHHhhhHHHHh-------------------cCHHHHHHHHHHHHhhCcccchHHHHHhhHHH
Confidence 9888774 1 0011111111111111 2222 47788999999999 799999999999
Q ss_pred HHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHHHHHHHHhhcccccHHHHHHHHHHhhh
Q 007721 488 LRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILAD 556 (591)
Q Consensus 488 ~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l~~~~~~~~~~~~~~~~ 556 (591)
...+..++|+..+.+++...|.........+..+...|.++++...+++++...|. ++..+..+..
T Consensus 213 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 278 (291)
T COG0457 213 LKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD---LYNLGLALLL 278 (291)
T ss_pred HHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc---hhhhhHHHHH
Confidence 99999999999999999999998889999999999888899999999999999998 4444444443
No 138
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.83 E-value=2.6e-07 Score=97.40 Aligned_cols=144 Identities=19% Similarity=0.167 Sum_probs=103.0
Q ss_pred HHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhh
Q 007721 344 ASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFH 422 (591)
Q Consensus 344 Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~-~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~ 422 (591)
+...+|.-..+++.++..+...|++++|...++..|+-.|+ +..+..++.++.+.++.++|++-+++++.++|
T Consensus 298 ~~~~~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P------ 371 (484)
T COG4783 298 AKRSKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDP------ 371 (484)
T ss_pred HHHhCccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC------
Confidence 33334666666666777777677777777766666666664 44445566666666666666666555555555
Q ss_pred hhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccchHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHH
Q 007721 423 GRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRL 502 (591)
Q Consensus 423 ~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~ 502 (591)
+.+.++.++|.+|.++|++++|++.+++
T Consensus 372 ----------------------------------------------------~~~~l~~~~a~all~~g~~~eai~~L~~ 399 (484)
T COG4783 372 ----------------------------------------------------NSPLLQLNLAQALLKGGKPQEAIRILNR 399 (484)
T ss_pred ----------------------------------------------------CccHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 4456777888888888888888888888
Q ss_pred HHhcCCchHHHHHhHHHHHHHcCCHHHHHHHHHHhhcccccHH
Q 007721 503 ARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE 545 (591)
Q Consensus 503 Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l~~~~~ 545 (591)
.+.-+|++++.+.+++..+-.+|+..+|...+-+...+.=..+
T Consensus 400 ~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~ 442 (484)
T COG4783 400 YLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLE 442 (484)
T ss_pred HhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHH
Confidence 8888888888888888888888888888887777777755555
No 139
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.78 E-value=2.5e-08 Score=78.27 Aligned_cols=63 Identities=17% Similarity=0.183 Sum_probs=57.2
Q ss_pred HhHHHHHHHhCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc
Q 007721 356 KYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNY 418 (591)
Q Consensus 356 ~~rg~~l~~l~~~~eAl~~~~~al~l~p~-~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~ 418 (591)
+.+|.++++.|++++|+..|+++++.+|+ ++.++.+|.++..+|++++|+..|+++++++|++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 46899999999999999999999999996 7888999999999999999999999999999986
No 140
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.77 E-value=1.9e-08 Score=106.33 Aligned_cols=73 Identities=10% Similarity=0.084 Sum_probs=67.3
Q ss_pred HcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCC-hH---HHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCcc
Q 007721 346 ELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VD---CLELRAWLFIAADDYESALRDTLALLAL-ESNY 418 (591)
Q Consensus 346 ~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~-~~---~~~~r~~~~~~~g~~~~A~~d~~~al~l-~P~~ 418 (591)
+-+|+++.+|+|+|.+|..+|+|++|++.|++||+++|+ .+ +|+++|.+|..+|++++|+.++++|+++ +|.+
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~~f 146 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNLKF 146 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcchhH
Confidence 468999999999999999999999999999999999997 43 4899999999999999999999999998 5544
No 141
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.77 E-value=5.7e-09 Score=104.74 Aligned_cols=101 Identities=19% Similarity=0.134 Sum_probs=80.6
Q ss_pred HHhHHHHHHHhCCHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhhch-HhHHHH
Q 007721 355 YKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVS-GDHLVK 432 (591)
Q Consensus 355 y~~rg~~l~~l~~~~eAl~~~~~al~l~p-~~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~~-~~~~~~ 432 (591)
...+|+-|..+|+|+|||.+|.++|.+.| ++-.+.+|+.+|++++++..|..|++.|+.||-.|..+|.|.+ +...++
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 57899999999999999999999999999 6777789999999999999999999999999999976554433 444444
Q ss_pred HHHhhhcccCchhhhhhhhhccccccccchHHHHHHHHHcCCCCchhH
Q 007721 433 LLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLR 480 (591)
Q Consensus 433 ~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~~P~~~~~~ 480 (591)
. ..+| -.+++++|++.|++-++.
T Consensus 180 ~-------~~EA------------------KkD~E~vL~LEP~~~ELk 202 (536)
T KOG4648|consen 180 N-------NMEA------------------KKDCETVLALEPKNIELK 202 (536)
T ss_pred h-------HHHH------------------HHhHHHHHhhCcccHHHH
Confidence 3 3334 335566677777766554
No 142
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.76 E-value=3.5e-08 Score=80.53 Aligned_cols=82 Identities=20% Similarity=0.236 Sum_probs=76.4
Q ss_pred hHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHHHHHHHHhhccc
Q 007721 462 SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIE 541 (591)
Q Consensus 462 al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l~ 541 (591)
|+..+++++...|.++.+++.+|.++...|++++|+..++++++..|.+.+.+...|.++...|++++|...+++++.+.
T Consensus 19 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 19 ALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELD 98 (100)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccC
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cc
Q 007721 542 RT 543 (591)
Q Consensus 542 ~~ 543 (591)
|+
T Consensus 99 ~~ 100 (100)
T cd00189 99 PN 100 (100)
T ss_pred CC
Confidence 74
No 143
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.76 E-value=3.4e-08 Score=101.39 Aligned_cols=249 Identities=12% Similarity=0.029 Sum_probs=165.2
Q ss_pred HhhhHHhhhccHHHHHHHHHHHhhccccc------hhhhhHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHhcCCc
Q 007721 261 QLGCVMFEREEYKDACYYFEAAADAGHIY------SLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLG 334 (591)
Q Consensus 261 ~lG~~~~~~g~~~eA~~~f~~Al~~~~~~------a~~~la~~~~~~G~~~~A~~~~~~aI~~~~~~g~a~~~r~~y~~~ 334 (591)
+-|.-.+..|++...+..|++|++.+-.+ .|..+|.+|+.+++|..|++.-.--|.+ .|
T Consensus 22 lEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltl---------ar------ 86 (639)
T KOG1130|consen 22 LEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTL---------AR------ 86 (639)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHH---------HH------
Confidence 34666677888888999999999985432 3445566666666655554332111111 11
Q ss_pred HHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCC-------ChHHHHHHHHHHHHcCCH------
Q 007721 335 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-------SVDCLELRAWLFIAADDY------ 401 (591)
Q Consensus 335 ~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p-------~~~~~~~r~~~~~~~g~~------ 401 (591)
.+--.-.-+.+-.|+|+++..+|+|++|+....|-|.+.- ...++|+.|.+|.+.|+-
T Consensus 87 ---------~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~p 157 (639)
T KOG1130|consen 87 ---------LLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAP 157 (639)
T ss_pred ---------HhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCCh
Confidence 0000011123446889999999999999998888776632 245688888888887753
Q ss_pred -------HHHHHHHHHHHhcCCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccc-hHHHHHHHHHcC
Q 007721 402 -------ESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIG-SLAVINQMLIND 473 (591)
Q Consensus 402 -------~~A~~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~-al~~~~~al~~~ 473 (591)
+++..+++.|.+.- ...+++....-.+..+-.|+.+++....-++|++ |+..-.+=|++.
T Consensus 158 ee~g~f~~ev~~al~~Av~fy------------~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia 225 (639)
T KOG1130|consen 158 EEKGAFNAEVTSALENAVKFY------------MENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIA 225 (639)
T ss_pred hhcccccHHHHHHHHHHHHHH------------HHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHH
Confidence 44555555555432 2234444445555566677788888888888887 444333344443
Q ss_pred CC------CchhHhhhHHHHHHhCCHHHHHHHHHHHHhcC----CchHH--HHHhHHHHHHHcCCHHHHHHHHHHhhccc
Q 007721 474 PG------KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHS----SSEHE--RLVYEGWILYDTGHREEALSRAEKSISIE 541 (591)
Q Consensus 474 P~------~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~----p~~~~--a~~~~G~~l~~~g~~eeAl~~~e~ai~l~ 541 (591)
-. --.++-|+|+++..+|.++-|++.|.+++.+. -...| .-|.+|..++-+..+++|+..+.|=++|.
T Consensus 226 ~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIA 305 (639)
T KOG1130|consen 226 QEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIA 305 (639)
T ss_pred HHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 23578999999999999999999998876554 33344 45899999999999999999999988886
Q ss_pred ccHH
Q 007721 542 RTFE 545 (591)
Q Consensus 542 ~~~~ 545 (591)
.+.+
T Consensus 306 qeL~ 309 (639)
T KOG1130|consen 306 QELE 309 (639)
T ss_pred HHHH
Confidence 5543
No 144
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.76 E-value=1.1e-06 Score=85.75 Aligned_cols=128 Identities=16% Similarity=0.092 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007721 335 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLA 413 (591)
Q Consensus 335 ~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p-~~~~~~~r~~~~~~~g~~~~A~~d~~~al~ 413 (591)
++|++.|+..++=||++..+|...-.++..+|+.-+||..++.-++.=| |.++|...+.+|...|+|+.|.=+|+..+-
T Consensus 103 ~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 103 KEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred hhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 7888888899999999999999999999999999999999999998878 589999999999999999999999999999
Q ss_pred cCCcchhhhhhch-HhHHHHHHHhhhcccCchhhhhhhhhccccccccchHHHHHHHHHcCCCCchhHhhhH
Q 007721 414 LESNYMMFHGRVS-GDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQS 484 (591)
Q Consensus 414 l~P~~~~~~~~~~-~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~~P~~~~~~~~~g 484 (591)
+.|-++++++|-+ ..+-.+. ++.... |...|.|+|.++|.+..++|..-
T Consensus 183 ~~P~n~l~f~rlae~~Yt~gg----~eN~~~------------------arkyy~~alkl~~~~~ral~GI~ 232 (289)
T KOG3060|consen 183 IQPFNPLYFQRLAEVLYTQGG----AENLEL------------------ARKYYERALKLNPKNLRALFGIY 232 (289)
T ss_pred cCCCcHHHHHHHHHHHHHHhh----HHHHHH------------------HHHHHHHHHHhChHhHHHHHHHH
Confidence 9999888887755 2221111 111111 36689999999998877776543
No 145
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.75 E-value=6.4e-08 Score=90.83 Aligned_cols=62 Identities=21% Similarity=0.183 Sum_probs=32.4
Q ss_pred hHHHHHHHhCCHHHHHHHHHHHHhcCCC-h-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc
Q 007721 357 YRAVAKMEEGQIRAAISEIDRIIVFKLS-V-----DCLELRAWLFIAADDYESALRDTLALLALESNY 418 (591)
Q Consensus 357 ~rg~~l~~l~~~~eAl~~~~~al~l~p~-~-----~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~ 418 (591)
.-|+-+..-|.|.+|...|..||++-|. + -+|.+||.++++++.++.|+.++.+||+|+|.|
T Consensus 100 ~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty 167 (271)
T KOG4234|consen 100 KEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTY 167 (271)
T ss_pred HHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchh
Confidence 3455555555555555555555555553 1 123445555555555555555555555555544
No 146
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.75 E-value=1.8e-06 Score=102.72 Aligned_cols=260 Identities=13% Similarity=0.010 Sum_probs=171.9
Q ss_pred HhhhHHhhhccHHHHHHHHHHHhhccc-cchhhhhHHHHHHhCChHHHHHHHHHH----HHhcCCC----HHHHHHHHhc
Q 007721 261 QLGCVMFEREEYKDACYYFEAAADAGH-IYSLAGLARAKYKVGQQYSAYKLINSI----ISEHKPT----GWMYQERSLY 331 (591)
Q Consensus 261 ~lG~~~~~~g~~~eA~~~f~~Al~~~~-~~a~~~la~~~~~~G~~~~A~~~~~~a----I~~~~~~----g~a~~~r~~y 331 (591)
..+..+...|++.+|..+...+-.... .......+......|+.......+..+ ...+|.. ++.+...
T Consensus 346 raa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~--- 422 (903)
T PRK04841 346 AAAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQ--- 422 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHC---
Confidence 345557778888888776544311111 112223445566677766655554432 1223332 3333333
Q ss_pred CCcHHHHHHHHHHHHcCCC---------ChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCC--h----HHHHHHHHHHH
Q 007721 332 NLGREKIVDLNYASELDPT---------LSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS--V----DCLELRAWLFI 396 (591)
Q Consensus 332 ~~~~eA~~dl~~Ai~LdP~---------~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~--~----~~~~~r~~~~~ 396 (591)
+..+++...+..+...-+. .......+|.++...|++++|...++++++..|. . .+...+|.++.
T Consensus 423 g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~ 502 (903)
T PRK04841 423 HRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHH 502 (903)
T ss_pred CCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH
Confidence 3337888888777664322 2344556888999999999999999999986553 2 12345778899
Q ss_pred HcCCHHHHHHHHHHHHhcCCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccchHHHHHHHHHcC---
Q 007721 397 AADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLIND--- 473 (591)
Q Consensus 397 ~~g~~~~A~~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~~--- 473 (591)
..|++++|+..+++++++....-.......+...++.+.....+++.| ...+++++++.
T Consensus 503 ~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A------------------~~~~~~al~~~~~~ 564 (903)
T PRK04841 503 CKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAA------------------YETQEKAFQLIEEQ 564 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHH------------------HHHHHHHHHHHHHh
Confidence 999999999999999987664422222233444445455555555555 55566665542
Q ss_pred -----CCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCC-----chHHHHHhHHHHHHHcCCHHHHHHHHHHhhccc
Q 007721 474 -----PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSS-----SEHERLVYEGWILYDTGHREEALSRAEKSISIE 541 (591)
Q Consensus 474 -----P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p-----~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l~ 541 (591)
|.....+..+|.++...|++++|.+.+++++.+.. ..+.++..+|.+....|++++|...++++..+.
T Consensus 565 ~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~ 642 (903)
T PRK04841 565 HLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLL 642 (903)
T ss_pred ccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 22234466789999999999999999999988633 246677889999999999999999999998763
No 147
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.75 E-value=7.5e-06 Score=77.05 Aligned_cols=238 Identities=23% Similarity=0.165 Sum_probs=163.3
Q ss_pred ccHHHHHHHHHHHhhcccc----chhhhhHHHHHHhCChHHHHHHHHHHHH--hcCCCHHHHHHHHhcC----CcHHHHH
Q 007721 270 EEYKDACYYFEAAADAGHI----YSLAGLARAKYKVGQQYSAYKLINSIIS--EHKPTGWMYQERSLYN----LGREKIV 339 (591)
Q Consensus 270 g~~~eA~~~f~~Al~~~~~----~a~~~la~~~~~~G~~~~A~~~~~~aI~--~~~~~g~a~~~r~~y~----~~~eA~~ 339 (591)
+.+..+...+..++...+. ......+..+...|....+...+...+. ..+..+..+...+.+. ...+++.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444455555554444322 3344455566667777777777777665 4555555555544321 1267888
Q ss_pred HHHHHHHcCCCChHHHHhHHH-HHHHhCCHHHHHHHHHHHHhcCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007721 340 DLNYASELDPTLSFPYKYRAV-AKMEEGQIRAAISEIDRIIVFKLS----VDCLELRAWLFIAADDYESALRDTLALLAL 414 (591)
Q Consensus 340 dl~~Ai~LdP~~~~ay~~rg~-~l~~l~~~~eAl~~~~~al~l~p~----~~~~~~r~~~~~~~g~~~~A~~d~~~al~l 414 (591)
.+.+++..+|.........+. ++...|++++|+..|.+++...|. ...+..++..+...+++++|+..+.+++..
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 196 (291)
T COG0457 117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL 196 (291)
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh
Confidence 899999988888777777777 899999999999999999887772 233445666688899999999999999999
Q ss_pred CCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccchHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHH
Q 007721 415 ESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQK 494 (591)
Q Consensus 415 ~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~ 494 (591)
.|+. ........+........++. +...+.+++...|.....+...+..+...|..+
T Consensus 197 ~~~~-----~~~~~~~~~~~~~~~~~~~~------------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (291)
T COG0457 197 NPDD-----DAEALLNLGLLYLKLGKYEE------------------ALEYYEKALELDPDNAEALYNLALLLLELGRYE 253 (291)
T ss_pred Cccc-----chHHHHHhhHHHHHcccHHH------------------HHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHH
Confidence 9983 01111111111111111222 477899999999998888888888888888899
Q ss_pred HHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHHHHHHHH
Q 007721 495 AAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEK 536 (591)
Q Consensus 495 eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ 536 (591)
+|...++++++..|. +...|+.+... ..++...+.+
T Consensus 254 ~~~~~~~~~~~~~~~----~~~~~~~~~~~--~~~~~~~~~~ 289 (291)
T COG0457 254 EALEALEKALELDPD----LYNLGLALLLL--LAEALELLEK 289 (291)
T ss_pred HHHHHHHHHHHhCcc----hhhhhHHHHHH--HHHHHHHHhh
Confidence 999999999999999 66777777666 5555544443
No 148
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=9.5e-08 Score=98.96 Aligned_cols=111 Identities=20% Similarity=0.138 Sum_probs=88.5
Q ss_pred hhHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHhcCCcHHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHH
Q 007721 293 GLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAI 372 (591)
Q Consensus 293 ~la~~~~~~G~~~~A~~~~~~aI~~~~~~g~a~~~r~~y~~~~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl 372 (591)
..|..+++.|++..|...|.+++..-... ++. ..++. .-..++. ...|.|++.++..+++|.+|+
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~~------~~~--~~ee~--~~~~~~k-----~~~~lNlA~c~lKl~~~~~Ai 277 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSFLEYR------RSF--DEEEQ--KKAEALK-----LACHLNLAACYLKLKEYKEAI 277 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHHhhcc------ccC--CHHHH--HHHHHHH-----HHHhhHHHHHHHhhhhHHHHH
Confidence 35788999999999999999998753210 000 00111 0111222 357899999999999999999
Q ss_pred HHHHHHHhcCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc
Q 007721 373 SEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNY 418 (591)
Q Consensus 373 ~~~~~al~l~p~-~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~ 418 (591)
...+++|+++|+ ..+++-||.++..+|+|+.|+.||++|++++|++
T Consensus 278 ~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~N 324 (397)
T KOG0543|consen 278 ESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSN 324 (397)
T ss_pred HHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCc
Confidence 999999999995 7889999999999999999999999999999997
No 149
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=1.4e-07 Score=97.69 Aligned_cols=129 Identities=18% Similarity=0.140 Sum_probs=97.7
Q ss_pred HHHHhHHHHHHHhCCHHHHHHHHHHHHhcCC-------C---------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 007721 353 FPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-------S---------VDCLELRAWLFIAADDYESALRDTLALLALES 416 (591)
Q Consensus 353 ~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p-------~---------~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P 416 (591)
.-..-+|+.|...|+|..|+.-|.||+.+=. . ..++.|.+.++.++++|.+|+..++++|+++|
T Consensus 209 ~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~ 288 (397)
T KOG0543|consen 209 DRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDP 288 (397)
T ss_pred HHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC
Confidence 3456789999999999999999999887622 0 12355677777777777777776666665555
Q ss_pred cchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccchHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHH
Q 007721 417 NYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAA 496 (591)
Q Consensus 417 ~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA 496 (591)
+ |+.+.|++|.+++.+|.++.|
T Consensus 289 ~----------------------------------------------------------N~KALyRrG~A~l~~~e~~~A 310 (397)
T KOG0543|consen 289 N----------------------------------------------------------NVKALYRRGQALLALGEYDLA 310 (397)
T ss_pred C----------------------------------------------------------chhHHHHHHHHHHhhccHHHH
Confidence 4 567899999999999999999
Q ss_pred HHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHH-HHHHHHhhc
Q 007721 497 MRCLRLARNHSSSEHERLVYEGWILYDTGHREEA-LSRAEKSIS 539 (591)
Q Consensus 497 ~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeA-l~~~e~ai~ 539 (591)
+.+|++|++++|+|.++..-+--+--+..++.+. -..|.+.++
T Consensus 311 ~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 311 RDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999988877776665555444 344554444
No 150
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.73 E-value=6.2e-08 Score=90.96 Aligned_cols=99 Identities=24% Similarity=0.289 Sum_probs=80.4
Q ss_pred HHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHhcCCcHHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHH
Q 007721 295 ARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISE 374 (591)
Q Consensus 295 a~~~~~~G~~~~A~~~~~~aI~~~~~~g~a~~~r~~y~~~~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~ 374 (591)
|.-++..|++.+|...|..++...|.... -.| +--|.|||.+++.+++.+.||.+
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~--e~r-----------------------sIly~Nraaa~iKl~k~e~aI~d 156 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTST--EER-----------------------SILYSNRAAALIKLRKWESAIED 156 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccH--HHH-----------------------HHHHhhhHHHHHHhhhHHHHHHH
Confidence 45567777777777777777776665433 111 23578999999999999999999
Q ss_pred HHHHHhcCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc
Q 007721 375 IDRIIVFKLSV-DCLELRAWLFIAADDYESALRDTLALLALESNY 418 (591)
Q Consensus 375 ~~~al~l~p~~-~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~ 418 (591)
+.|||+++|.+ .++.-|+.+|..+..|++|+.||.++++++|..
T Consensus 157 csKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 157 CSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSR 201 (271)
T ss_pred HHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcch
Confidence 99999999975 556667999999999999999999999999975
No 151
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.71 E-value=1.4e-07 Score=76.81 Aligned_cols=83 Identities=22% Similarity=0.244 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007721 335 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLA 413 (591)
Q Consensus 335 ~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~-~~~~~~r~~~~~~~g~~~~A~~d~~~al~ 413 (591)
.+|+..+.++++..|+...++..+|.++...|++++|+..+++++...|. ...+...+.++...|++++|...++++++
T Consensus 17 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 17 DEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHc
Confidence 78888889999999999999999999999999999999999999999996 56778899999999999999999999999
Q ss_pred cCCc
Q 007721 414 LESN 417 (591)
Q Consensus 414 l~P~ 417 (591)
++|+
T Consensus 97 ~~~~ 100 (100)
T cd00189 97 LDPN 100 (100)
T ss_pred cCCC
Confidence 9984
No 152
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.71 E-value=2.4e-08 Score=82.85 Aligned_cols=74 Identities=19% Similarity=0.186 Sum_probs=63.6
Q ss_pred HHHHHHHHHcCCC--CchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHHHHHHHHh
Q 007721 463 LAVINQMLINDPG--KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKS 537 (591)
Q Consensus 463 l~~~~~al~~~P~--~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~~e~a 537 (591)
+..++++++.+|. +...++++|.++.++|++++|+..+++ ..++|.+.+.++..|.+++.+|+++||+..+++|
T Consensus 9 i~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 9 IKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 4555555555553 456788899999999999999999999 9999999999999999999999999999999986
No 153
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.71 E-value=2.1e-06 Score=90.77 Aligned_cols=138 Identities=12% Similarity=0.008 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007721 335 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLA 413 (591)
Q Consensus 335 ~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~-~~~~~~r~~~~~~~g~~~~A~~d~~~al~ 413 (591)
++|...++..+...|+++..+-.++.++++.|+..+|++-+++++.++|+ +-...++|.++.+.|++++|++.+++.+.
T Consensus 323 d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~ 402 (484)
T COG4783 323 DEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLF 402 (484)
T ss_pred chHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhh
Confidence 77777788888888888888888888888888888888888888888886 55567788888888888888888888888
Q ss_pred cCCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccchHHHHHHHHHcCCCCchhHhhhHHHHHHhCCH
Q 007721 414 LESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQ 493 (591)
Q Consensus 414 l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~ 493 (591)
-+|+++ ..+..+ -|+-+..-+.+.++-.+++.+...|++
T Consensus 403 ~~p~dp------~~w~~L-----------------------------------Aqay~~~g~~~~a~~A~AE~~~~~G~~ 441 (484)
T COG4783 403 NDPEDP------NGWDLL-----------------------------------AQAYAELGNRAEALLARAEGYALAGRL 441 (484)
T ss_pred cCCCCc------hHHHHH-----------------------------------HHHHHHhCchHHHHHHHHHHHHhCCCH
Confidence 888772 122211 122222233344555667777777777
Q ss_pred HHHHHHHHHHHhcC-CchHHH
Q 007721 494 KAAMRCLRLARNHS-SSEHER 513 (591)
Q Consensus 494 ~eA~~~~~~Al~l~-p~~~~a 513 (591)
++|+..+.+|.+.. ++..+.
T Consensus 442 ~~A~~~l~~A~~~~~~~~~~~ 462 (484)
T COG4783 442 EQAIIFLMRASQQVKLGFPDW 462 (484)
T ss_pred HHHHHHHHHHHHhccCCcHHH
Confidence 77777777777665 444443
No 154
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.70 E-value=1.3e-06 Score=93.87 Aligned_cols=160 Identities=19% Similarity=0.106 Sum_probs=117.7
Q ss_pred HhHHHHHHHhCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhhchHhHHHHHH
Q 007721 356 KYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLL 434 (591)
Q Consensus 356 ~~rg~~l~~l~~~~eAl~~~~~al~l~p~-~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~~~~~~~~~l 434 (591)
+.+|.+..++++.++|+.+++ .+++. ....++++.++..+|+|++|+.-|+..++=+-+.....-+.........
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~- 158 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA- 158 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh-
Confidence 678999999999999999999 56775 4478899999999999999999999998877655322222221111100
Q ss_pred HhhhcccCchhhhhhhhhccccccccchHHH-HHHHHHcCCC-CchhHhhhHHHHHHhCCHHHHHHHHHHHHhc------
Q 007721 435 NHHVRSWSPADCWIKLYDRWSSVDDIGSLAV-INQMLINDPG-KSFLRFRQSLLLLRLNCQKAAMRCLRLARNH------ 506 (591)
Q Consensus 435 ~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~-~~~al~~~P~-~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l------ 506 (591)
+.. ..+..-.-|. +=+.+||.+-++.-.|.+.+|++.+++|+++
T Consensus 159 ----------------------------l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~ 210 (652)
T KOG2376|consen 159 ----------------------------LQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLE 210 (652)
T ss_pred ----------------------------hhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhc
Confidence 000 1222222232 3457999999999999999999999999432
Q ss_pred -CCch--------HHHHHhHHHHHHHcCCHHHHHHHHHHhhcccccHHHH
Q 007721 507 -SSSE--------HERLVYEGWILYDTGHREEALSRAEKSISIERTFEAF 547 (591)
Q Consensus 507 -~p~~--------~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l~~~~~~~ 547 (591)
.-.+ .-..+.++.+|..+|+-+||.+.|..-|+.+|-.+.+
T Consensus 211 ~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~ 260 (652)
T KOG2376|consen 211 DEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPS 260 (652)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchH
Confidence 1111 2356788999999999999999999999998877754
No 155
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.69 E-value=3.9e-06 Score=92.51 Aligned_cols=259 Identities=16% Similarity=0.116 Sum_probs=151.6
Q ss_pred hhhHHhhhccHHHHHHHHHHHhhc--cccchhhhhHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHhcC-------
Q 007721 262 LGCVMFEREEYKDACYYFEAAADA--GHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYN------- 332 (591)
Q Consensus 262 lG~~~~~~g~~~eA~~~f~~Al~~--~~~~a~~~la~~~~~~G~~~~A~~~~~~aI~~~~~~g~a~~~r~~y~------- 332 (591)
...++.+.|++++|++........ +.....-..|.++..+|++++|...|...|..+|++..-|.......
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccc
Confidence 355667788888888887653332 33344556788888888888888888888888887665554432110
Q ss_pred C--cHHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCH---HHHHHH
Q 007721 333 L--GREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDY---ESALRD 407 (591)
Q Consensus 333 ~--~~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~~~~~~~r~~~~~~~g~~---~~A~~d 407 (591)
. ...-...|+...+..|....+ ..+...+..-..+.+.+..|=+-.--+--|..+.+.--+|....+. ++-+..
T Consensus 90 ~~~~~~~~~~y~~l~~~yp~s~~~-~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~ 168 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKYPRSDAP-RRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEE 168 (517)
T ss_pred cccHHHHHHHHHHHHHhCccccch-hHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHH
Confidence 0 133344566666666654322 2222222222234443333322221111133333332233222111 122222
Q ss_pred HHHHHhcCCcchhhhhhchHhHHHHHHHhhhcccCchhhh-----hhhhhccccccccchHHHHHHHHHcCCCCchhHhh
Q 007721 408 TLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCW-----IKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFR 482 (591)
Q Consensus 408 ~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~-----~~l~~~~~~~~~~~al~~~~~al~~~P~~~~~~~~ 482 (591)
|...++-.+.+...- ........+..| .|.|+....++ .|+..+++||+..|..+++|..
T Consensus 169 ~~~~l~~~~~~~~~~-------------~~~~~~p~~~lw~~~~lAqhyd~~g~~~--~Al~~Id~aI~htPt~~ely~~ 233 (517)
T PF12569_consen 169 YVNSLESNGSFSNGD-------------DEEKEPPSTLLWTLYFLAQHYDYLGDYE--KALEYIDKAIEHTPTLVELYMT 233 (517)
T ss_pred HHHhhcccCCCCCcc-------------ccccCCchHHHHHHHHHHHHHHHhCCHH--HHHHHHHHHHhcCCCcHHHHHH
Confidence 333332222110000 000111112223 34454433333 3699999999999999999999
Q ss_pred hHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHHHHHHHH
Q 007721 483 QSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEK 536 (591)
Q Consensus 483 ~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ 536 (591)
+|.+|-..|++++|.+.++.|..+++.|-..-....-.++..|++++|......
T Consensus 234 KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~ 287 (517)
T PF12569_consen 234 KARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASL 287 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 999999999999999999999999999988888888889999999999876543
No 156
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=5.1e-07 Score=90.61 Aligned_cols=123 Identities=12% Similarity=0.016 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007721 335 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLA 413 (591)
Q Consensus 335 ~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~-~~~~~~r~~~~~~~g~~~~A~~d~~~al~ 413 (591)
++-+.-++.-+.-||++++-|.-+|-+|+.+|+++.|...|.+|+++.|+ ++.+-..|.++....
T Consensus 139 ~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a-------------- 204 (287)
T COG4235 139 EALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQA-------------- 204 (287)
T ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc--------------
Confidence 45566777777778888888888888888888888888777777777774 554433333221111
Q ss_pred cCCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccchHHHHHHHHHcCCCCchhHhhhHHHHHHhCCH
Q 007721 414 LESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQ 493 (591)
Q Consensus 414 l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~ 493 (591)
++. +...+-..++++|.+||.++.+.+.+|......|++
T Consensus 205 -~~~----------------------------------------~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~ 243 (287)
T COG4235 205 -GQQ----------------------------------------MTAKARALLRQALALDPANIRALSLLAFAAFEQGDY 243 (287)
T ss_pred -CCc----------------------------------------ccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccH
Confidence 010 011113346666666666666666666666666666
Q ss_pred HHHHHHHHHHHhcCCchHH
Q 007721 494 KAAMRCLRLARNHSSSEHE 512 (591)
Q Consensus 494 ~eA~~~~~~Al~l~p~~~~ 512 (591)
++|....+.-+.+.|.+..
T Consensus 244 ~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 244 AEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHHHHHhcCCCCCc
Confidence 6666666666666665543
No 157
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.63 E-value=5e-07 Score=91.37 Aligned_cols=107 Identities=8% Similarity=-0.029 Sum_probs=82.6
Q ss_pred hHHHHhHHHHH-HHhCCHHHHHHHHHHHHhcCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhhch
Q 007721 352 SFPYKYRAVAK-MEEGQIRAAISEIDRIIVFKLS----VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVS 426 (591)
Q Consensus 352 ~~ay~~rg~~l-~~l~~~~eAl~~~~~al~l~p~----~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~~ 426 (591)
...++..|..+ +..|+|++|+..|++.|+..|+ +.+++.+|.++...|++++|+..|+++++..|++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s-------- 213 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKS-------- 213 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC--------
Confidence 45666666665 5568888888888888888885 3567778888888888888888888888888875
Q ss_pred HhHHHHHHHhhhcccCchhhhhhhhhccccccccchHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhc
Q 007721 427 GDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNH 506 (591)
Q Consensus 427 ~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l 506 (591)
|..+++++.+|.++..+|+.++|...|+++++.
T Consensus 214 -----------------------------------------------~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 214 -----------------------------------------------PKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred -----------------------------------------------cchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 455677777888888888888888888888888
Q ss_pred CCchHHH
Q 007721 507 SSSEHER 513 (591)
Q Consensus 507 ~p~~~~a 513 (591)
.|++..+
T Consensus 247 yP~s~~a 253 (263)
T PRK10803 247 YPGTDGA 253 (263)
T ss_pred CcCCHHH
Confidence 8877654
No 158
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.62 E-value=4.8e-07 Score=80.20 Aligned_cols=99 Identities=19% Similarity=0.120 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccchHHH
Q 007721 386 DCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAV 465 (591)
Q Consensus 386 ~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~ 465 (591)
..++.+++++..+|+.++|+..|+++++..++..
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~---------------------------------------------- 35 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGA---------------------------------------------- 35 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch----------------------------------------------
Confidence 4567788888888888888888888888665430
Q ss_pred HHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCc---hHHHHHhHHHHHHHcCCHHHHHHHHHHhhc
Q 007721 466 INQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSS---EHERLVYEGWILYDTGHREEALSRAEKSIS 539 (591)
Q Consensus 466 ~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~---~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~ 539 (591)
.-..+++.+|.++..+|++++|++.+++++...|+ +......++.+|+..|+.+||++.+-+++.
T Consensus 36 ---------~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 36 ---------DRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred ---------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 11235666778888888888888888888888777 777778888888888888888888777775
No 159
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.61 E-value=2.3e-06 Score=93.97 Aligned_cols=148 Identities=11% Similarity=-0.011 Sum_probs=110.0
Q ss_pred hhHHhhhccHHHHHHHHHHHhhccccchhhhhHHHHHHhCChHHHHHHHHHHHHhcC-CCHH--HHHHHHhcC--CcHHH
Q 007721 263 GCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHK-PTGW--MYQERSLYN--LGREK 337 (591)
Q Consensus 263 G~~~~~~g~~~eA~~~f~~Al~~~~~~a~~~la~~~~~~G~~~~A~~~~~~aI~~~~-~~g~--a~~~r~~y~--~~~eA 337 (591)
-..|...|+...|...-.+-++.++ .++.|..+|+...--..|+++++... ..+. +|.++..+. ...++
T Consensus 431 i~CY~~lg~~~kaeei~~q~lek~~------d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~ 504 (777)
T KOG1128|consen 431 ILCYLLLGQHGKAEEINRQELEKDP------DPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEA 504 (777)
T ss_pred HHHHHHhcccchHHHHHHHHhcCCC------cchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHH
Confidence 3345555555555544444445222 23456666666555566666666532 2233 332222222 12899
Q ss_pred HHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 007721 338 IVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALES 416 (591)
Q Consensus 338 ~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~-~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P 416 (591)
.++|+..++++|-....|+++|.+..++++++.|..+|.+.+.++|+ ..+|+|...+|..+|+..+|-+.+..|++-+=
T Consensus 505 ~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~ 584 (777)
T KOG1128|consen 505 DKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY 584 (777)
T ss_pred HHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC
Confidence 99999999999999999999999999999999999999999999996 79999999999999999999999999999883
No 160
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.60 E-value=3.8e-06 Score=84.24 Aligned_cols=159 Identities=16% Similarity=0.089 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHHcCCCChHHH---HhHHHHHHHhCCHHHHHHHHHHHHhcCCC----hHHHHHHHHHHHHcCC-------
Q 007721 335 REKIVDLNYASELDPTLSFPY---KYRAVAKMEEGQIRAAISEIDRIIVFKLS----VDCLELRAWLFIAADD------- 400 (591)
Q Consensus 335 ~eA~~dl~~Ai~LdP~~~~ay---~~rg~~l~~l~~~~eAl~~~~~al~l~p~----~~~~~~r~~~~~~~g~------- 400 (591)
++|+..|++++...|....+. ..+|.++.+++++++|+..+++.|++.|+ +.+++.+|.++..+++
T Consensus 49 ~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~ 128 (243)
T PRK10866 49 KQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFF 128 (243)
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhcc
Confidence 444555555555555554443 78999999999999999999999999995 3567788887655541
Q ss_pred -----------HHHHHHHHHHHHhcCCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccchHHHHHHH
Q 007721 401 -----------YESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQM 469 (591)
Q Consensus 401 -----------~~~A~~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~a 469 (591)
..+|+..|++.++.-|+... +...... +..++..
T Consensus 129 ~~~~~~rD~~~~~~A~~~~~~li~~yP~S~y------a~~A~~r-----------------------------l~~l~~~ 173 (243)
T PRK10866 129 GVDRSDRDPQHARAAFRDFSKLVRGYPNSQY------TTDATKR-----------------------------LVFLKDR 173 (243)
T ss_pred CCCccccCHHHHHHHHHHHHHHHHHCcCChh------HHHHHHH-----------------------------HHHHHHH
Confidence 35788999999999998621 1110000 1112222
Q ss_pred HHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCc---hHHHHHhHHHHHHHcCCHHHHHHHH
Q 007721 470 LINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSS---EHERLVYEGWILYDTGHREEALSRA 534 (591)
Q Consensus 470 l~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~---~~~a~~~~G~~l~~~g~~eeAl~~~ 534 (591)
|+ .--+..|..+.+.|.+.+|+.-++..++.-|+ ..+|++.++..+..+|.-++|-+..
T Consensus 174 la------~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~ 235 (243)
T PRK10866 174 LA------KYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVA 235 (243)
T ss_pred HH------HHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 21 12335667778889999999999999998886 5789999999999999999997543
No 161
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.60 E-value=1.3e-06 Score=80.25 Aligned_cols=119 Identities=18% Similarity=0.088 Sum_probs=97.3
Q ss_pred HhCCHHHHHHHHHHHHhcCCCh----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhhchHhHHHHHHHhhhc
Q 007721 364 EEGQIRAAISEIDRIIVFKLSV----DCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVR 439 (591)
Q Consensus 364 ~l~~~~eAl~~~~~al~l~p~~----~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~ 439 (591)
..++...+.+.+++.++-.|+. .+...++..+...|++++|+..|++++.-.|+..
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~-------------------- 82 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPE-------------------- 82 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHH--------------------
Confidence 5788888888899999988862 2234477889999999999999999999877641
Q ss_pred ccCchhhhhhhhhccccccccchHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHH
Q 007721 440 SWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGW 519 (591)
Q Consensus 440 ~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~ 519 (591)
-.+.+++++|.++..+|.+++|+..++. +.-.+-.+.++..+|.
T Consensus 83 -----------------------------------l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gd 126 (145)
T PF09976_consen 83 -----------------------------------LKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGD 126 (145)
T ss_pred -----------------------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHH
Confidence 0134567889999999999999999966 4556667889999999
Q ss_pred HHHHcCCHHHHHHHHHHhh
Q 007721 520 ILYDTGHREEALSRAEKSI 538 (591)
Q Consensus 520 ~l~~~g~~eeAl~~~e~ai 538 (591)
++...|++++|.+.|++||
T Consensus 127 i~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 127 IYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHCCCHHHHHHHHHHhC
Confidence 9999999999999999986
No 162
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.56 E-value=1.5e-06 Score=77.03 Aligned_cols=99 Identities=23% Similarity=0.061 Sum_probs=83.1
Q ss_pred hHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhhchH
Q 007721 352 SFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS----VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSG 427 (591)
Q Consensus 352 ~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~----~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~~~ 427 (591)
+.+++++|.++..+|+.++|+..|++|++..++ ..++..+|..+..+|++++|+..++++++-.|+.
T Consensus 1 ~~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~--------- 71 (120)
T PF12688_consen 1 PRALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDD--------- 71 (120)
T ss_pred CchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc---------
Confidence 357899999999999999999999999998664 2456678899999999999999999999888863
Q ss_pred hHHHHHHHhhhcccCchhhhhhhhhccccccccchHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHh
Q 007721 428 DHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARN 505 (591)
Q Consensus 428 ~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~ 505 (591)
+.+..+....+.+|..+|+++||++.+-.++.
T Consensus 72 ----------------------------------------------~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 72 ----------------------------------------------ELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred ----------------------------------------------cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 22344455577899999999999999988875
No 163
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.54 E-value=9e-07 Score=89.52 Aligned_cols=107 Identities=9% Similarity=0.004 Sum_probs=92.9
Q ss_pred hHHHHHHHHHH-HHcCCHHHHHHHHHHHHhcCCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccchH
Q 007721 385 VDCLELRAWLF-IAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSL 463 (591)
Q Consensus 385 ~~~~~~r~~~~-~~~g~~~~A~~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al 463 (591)
...++..+..+ ...|+|++|+..|++.++..|+.
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s--------------------------------------------- 176 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDS--------------------------------------------- 176 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC---------------------------------------------
Confidence 45566666644 66799999999999999999975
Q ss_pred HHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCc---hHHHHHhHHHHHHHcCCHHHHHHHHHHhhcc
Q 007721 464 AVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSS---EHERLVYEGWILYDTGHREEALSRAEKSISI 540 (591)
Q Consensus 464 ~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~---~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l 540 (591)
+-.+.+++.+|.++...|++++|+..|++++...|+ .+++++.+|.++..+|++++|...|++.++.
T Consensus 177 ----------~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 177 ----------TYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred ----------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 122456788999999999999999999999998887 6999999999999999999999999999999
Q ss_pred cccHHH
Q 007721 541 ERTFEA 546 (591)
Q Consensus 541 ~~~~~~ 546 (591)
-|+.++
T Consensus 247 yP~s~~ 252 (263)
T PRK10803 247 YPGTDG 252 (263)
T ss_pred CcCCHH
Confidence 998873
No 164
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.53 E-value=3.1e-07 Score=73.63 Aligned_cols=68 Identities=22% Similarity=0.253 Sum_probs=59.2
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHHHHHHHHhhcccccHH-HHHHHH
Q 007721 484 SLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE-AFFLKA 551 (591)
Q Consensus 484 g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l~~~~~-~~~~~~ 551 (591)
..++...+++++|+..+++++.++|+++..+..+|.+++.+|++++|+..+++++++.|+.. +-.+++
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 45678889999999999999999999999999999999999999999999999999999777 544443
No 165
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.52 E-value=0.00011 Score=76.20 Aligned_cols=279 Identities=15% Similarity=0.039 Sum_probs=172.6
Q ss_pred hhhccccchhHHHHHHHHhhcchhhhHHHHHHHHhhhHHhhhccHHHHHHHHHHHhhc-ccc--chhhhhHHHHHHhCCh
Q 007721 228 AMEKDRVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADA-GHI--YSLAGLARAKYKVGQQ 304 (591)
Q Consensus 228 ~~d~~~r~~~~v~lLe~~~~~~~~~~~~~~a~~~lG~~~~~~g~~~eA~~~f~~Al~~-~~~--~a~~~la~~~~~~G~~ 304 (591)
.+.+.. ...+..++.++-+..++ +.+++..-..+-.+.|+++.|=.+..+|-+. +.. .....+++....+|++
T Consensus 94 ~l~eG~-~~qAEkl~~rnae~~e~---p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~ 169 (400)
T COG3071 94 KLFEGD-FQQAEKLLRRNAEHGEQ---PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDY 169 (400)
T ss_pred HHhcCc-HHHHHHHHHHhhhcCcc---hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCc
Confidence 344443 55566666665444443 3445544455667788999998888888887 222 2344567778888888
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHhcCCc----HHHHH---HHHHHHHcCCCChHHHHhHHHH-HHHhCCHHHHHH---
Q 007721 305 YSAYKLINSIISEHKPTGWMYQERSLYNLG----REKIV---DLNYASELDPTLSFPYKYRAVA-KMEEGQIRAAIS--- 373 (591)
Q Consensus 305 ~~A~~~~~~aI~~~~~~g~a~~~r~~y~~~----~eA~~---dl~~Ai~LdP~~~~ay~~rg~~-l~~l~~~~eAl~--- 373 (591)
..|.....++.+..|.......-...+... .+..+ .+.++=.+.+....-+-+.+.. ++++.+.++-.+
T Consensus 170 ~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~ 249 (400)
T COG3071 170 PAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLK 249 (400)
T ss_pred hhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHH
Confidence 888777777777777655444222211100 22222 2333333444333334443332 112211111111
Q ss_pred HHH----HHHhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhhchHhHHHHHHHhhhcccCchhhhhh
Q 007721 374 EID----RIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIK 449 (591)
Q Consensus 374 ~~~----~al~l~p~~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~ 449 (591)
.+= +.++-+ +......+.=+..+|+.++|.+....+++-.=|. = +..
T Consensus 250 ~~W~~~pr~lr~~--p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~-------------------------~--L~~ 300 (400)
T COG3071 250 TWWKNQPRKLRND--PELVVAYAERLIRLGDHDEAQEIIEDALKRQWDP-------------------------R--LCR 300 (400)
T ss_pred HHHHhccHHhhcC--hhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCh-------------------------h--HHH
Confidence 111 222111 2222223344677788888888777777654332 1 123
Q ss_pred hhhccccccccchHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHH
Q 007721 450 LYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREE 529 (591)
Q Consensus 450 l~~~~~~~~~~~al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~ee 529 (591)
+++++.--|.-.=+..+++.+...|.++.++..+|.+..+.+.+.+|...++.|+...|+ ++.+..+|-++-.+|+.++
T Consensus 301 ~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~ 379 (400)
T COG3071 301 LIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEE 379 (400)
T ss_pred HHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHH
Confidence 333333222222355889999999999999999999999999999999999999999998 5678999999999999999
Q ss_pred HHHHHHHhhcc
Q 007721 530 ALSRAEKSISI 540 (591)
Q Consensus 530 Al~~~e~ai~l 540 (591)
|-+.+++++.+
T Consensus 380 A~~~r~e~L~~ 390 (400)
T COG3071 380 AEQVRREALLL 390 (400)
T ss_pred HHHHHHHHHHH
Confidence 99999999864
No 166
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.50 E-value=3.7e-07 Score=72.14 Aligned_cols=65 Identities=18% Similarity=0.106 Sum_probs=58.6
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHHHHHHHHhhcccccHH-HHHHHH
Q 007721 487 LLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE-AFFLKA 551 (591)
Q Consensus 487 l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l~~~~~-~~~~~~ 551 (591)
|...|++++|++.|++++..+|++.++.+.+|.+++.+|++++|.+.+++++..+|+.. .+.++|
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 46789999999999999999999999999999999999999999999999999999975 555544
No 167
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.49 E-value=3.3e-07 Score=85.38 Aligned_cols=93 Identities=16% Similarity=0.071 Sum_probs=75.5
Q ss_pred HHHHHHHHHcCCCCchhHhhhHHHHHHh----------CCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCC------
Q 007721 463 LAVINQMLINDPGKSFLRFRQSLLLLRL----------NCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGH------ 526 (591)
Q Consensus 463 l~~~~~al~~~P~~~~~~~~~g~~l~~l----------~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~------ 526 (591)
...+......+|.+++.+++=|.+|+.| ..+++|+.-|+.||.++|+.++|++++|.++..+|.
T Consensus 11 rk~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~ 90 (186)
T PF06552_consen 11 RKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTA 90 (186)
T ss_dssp HHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HH
T ss_pred HHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChH
Confidence 5567888999999999999999999986 445789999999999999999999999999998855
Q ss_pred -----HHHHHHHHHHhhcccccHHHHHHHHHHhhh
Q 007721 527 -----REEALSRAEKSISIERTFEAFFLKAYILAD 556 (591)
Q Consensus 527 -----~eeAl~~~e~ai~l~~~~~~~~~~~~~~~~ 556 (591)
|++|...|++|..++|+++.|. |+.-+++
T Consensus 91 ~A~~~F~kA~~~FqkAv~~~P~ne~Y~-ksLe~~~ 124 (186)
T PF06552_consen 91 EAEEYFEKATEYFQKAVDEDPNNELYR-KSLEMAA 124 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TT-HHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcHHHH-HHHHHHH
Confidence 8999999999999999999875 5555443
No 168
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.48 E-value=5.1e-06 Score=85.28 Aligned_cols=219 Identities=18% Similarity=0.086 Sum_probs=129.2
Q ss_pred HHHHhhhHHhhhccHHHHHHHHHHHhhccccchhhhhHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHhcCCcHHH
Q 007721 258 ALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREK 337 (591)
Q Consensus 258 a~~~lG~~~~~~g~~~eA~~~f~~Al~~~~~~a~~~la~~~~~~G~~~~A~~~~~~aI~~~~~~g~a~~~r~~y~~~~eA 337 (591)
.|..-|..+-..|++++|.++|.+|... +...|....|-..+..+...+. .. ...+|
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~------------~~~~~~~~~Aa~~~~~Aa~~~k--------~~---~~~~A 93 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADC------------YEKLGDKFEAAKAYEEAANCYK--------KG---DPDEA 93 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHH------------HHHTT-HHHHHHHHHHHHHHHH--------HT---THHHH
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHH------------HHHcCCHHHHHHHHHHHHHHHH--------hh---CHHHH
Confidence 4556677777778888888888776554 1222222222222222211110 00 11333
Q ss_pred HHHHHHHHHcCC------CChHHHHhHHHHHHHh-CCHHHHHHHHHHHHhcCC---C----hHHHHHHHHHHHHcCCHHH
Q 007721 338 IVDLNYASELDP------TLSFPYKYRAVAKMEE-GQIRAAISEIDRIIVFKL---S----VDCLELRAWLFIAADDYES 403 (591)
Q Consensus 338 ~~dl~~Ai~LdP------~~~~ay~~rg~~l~~l-~~~~eAl~~~~~al~l~p---~----~~~~~~r~~~~~~~g~~~~ 403 (591)
+..|++|+++-- .-+..+.+.|.+|... |++++|+..|.+|+++-- . ..++...+.++..+|+|++
T Consensus 94 i~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~ 173 (282)
T PF14938_consen 94 IECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEE 173 (282)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHH
Confidence 444444433311 1146788888888888 889999999999988721 1 2334456778888999999
Q ss_pred HHHHHHHHHhcCCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccchHHHHHHHHHcCCCCchhHhhh
Q 007721 404 ALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQ 483 (591)
Q Consensus 404 A~~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~~P~~~~~~~~~ 483 (591)
|+..|+++....-+.. ... .+-...+++.
T Consensus 174 A~~~~e~~~~~~l~~~------l~~---------------------------------------------~~~~~~~l~a 202 (282)
T PF14938_consen 174 AIEIYEEVAKKCLENN------LLK---------------------------------------------YSAKEYFLKA 202 (282)
T ss_dssp HHHHHHHHHHTCCCHC------TTG---------------------------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccc------ccc---------------------------------------------hhHHHHHHHH
Confidence 9998888877665531 000 0112356778
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCchHH---HHHhHHHHH----HHcCCHHHHHHHHHHhhcccccHHHHHHH
Q 007721 484 SLLLLRLNCQKAAMRCLRLARNHSSSEHE---RLVYEGWIL----YDTGHREEALSRAEKSISIERTFEAFFLK 550 (591)
Q Consensus 484 g~~l~~l~~~~eA~~~~~~Al~l~p~~~~---a~~~~G~~l----~~~g~~eeAl~~~e~ai~l~~~~~~~~~~ 550 (591)
+++++..|++-.|...+++....+|.... .-.-.+.+- -+...|++|+..|.+...|+|=-...++|
T Consensus 203 ~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w~~~~l~~ 276 (282)
T PF14938_consen 203 ILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNWKTKMLLK 276 (282)
T ss_dssp HHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---HHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHHHHHHHHHH
Confidence 88999999999999999999999985432 222222222 13467999999999998888866666655
No 169
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.48 E-value=3.2e-06 Score=77.75 Aligned_cols=111 Identities=17% Similarity=0.146 Sum_probs=76.2
Q ss_pred hCChHHHHHHHHHHHHhcCCCHHHH---HHHHh--c--CCcHHHHHHHHHHHHcCCCC---hHHHHhHHHHHHHhCCHHH
Q 007721 301 VGQQYSAYKLINSIISEHKPTGWMY---QERSL--Y--NLGREKIVDLNYASELDPTL---SFPYKYRAVAKMEEGQIRA 370 (591)
Q Consensus 301 ~G~~~~A~~~~~~aI~~~~~~g~a~---~~r~~--y--~~~~eA~~dl~~Ai~LdP~~---~~ay~~rg~~l~~l~~~~e 370 (591)
.|+...+...+...+..+|+.+.+. ...+. + +..++|...|++++.-.|+. ..+..++|.+++.+|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4444445455555555555442221 11111 1 22277777777777776655 4578889999999999999
Q ss_pred HHHHHHHHHhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007721 371 AISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALL 412 (591)
Q Consensus 371 Al~~~~~al~l~p-~~~~~~~r~~~~~~~g~~~~A~~d~~~al 412 (591)
|+..++.+- -.+ .+..+..+|.++..+|++++|+..|++|+
T Consensus 104 Al~~L~~~~-~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 104 ALATLQQIP-DEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHhcc-CcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 999997732 222 35666789999999999999999999985
No 170
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.48 E-value=2.8e-07 Score=76.36 Aligned_cols=76 Identities=24% Similarity=0.211 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHcCCC--ChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007721 335 REKIVDLNYASELDPT--LSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLAL 411 (591)
Q Consensus 335 ~eA~~dl~~Ai~LdP~--~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~-~~~~~~r~~~~~~~g~~~~A~~d~~~a 411 (591)
++|+..|+++++.+|+ +...++++|.++.+.|++++|+..+++ ++.+|. +...+..|.++.++|++++|+..|+++
T Consensus 6 ~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 6 ENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 8899999999999996 467788899999999999999999999 888886 577788899999999999999999875
No 171
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.46 E-value=3.9e-07 Score=84.85 Aligned_cols=84 Identities=17% Similarity=0.057 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCC----------HHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCC---
Q 007721 335 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQ----------IRAAISEIDRIIVFKLS-VDCLELRAWLFIAADD--- 400 (591)
Q Consensus 335 ~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~----------~~eAl~~~~~al~l~p~-~~~~~~r~~~~~~~g~--- 400 (591)
+.|.+.++.+...||.+++++++.|.+|.++.+ +++|++-|+.||.++|+ .+++++.|.+|..++.
T Consensus 8 E~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~ 87 (186)
T PF06552_consen 8 EHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTP 87 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcC
Confidence 678888899999999999999999999998844 56789999999999997 6888888877665544
Q ss_pred --------HHHHHHHHHHHHhcCCcc
Q 007721 401 --------YESALRDTLALLALESNY 418 (591)
Q Consensus 401 --------~~~A~~d~~~al~l~P~~ 418 (591)
|++|...|++|...+|++
T Consensus 88 d~~~A~~~F~kA~~~FqkAv~~~P~n 113 (186)
T PF06552_consen 88 DTAEAEEYFEKATEYFQKAVDEDPNN 113 (186)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred ChHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 788888999999999987
No 172
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.46 E-value=6.7e-07 Score=71.70 Aligned_cols=60 Identities=18% Similarity=0.227 Sum_probs=48.3
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc
Q 007721 359 AVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNY 418 (591)
Q Consensus 359 g~~l~~l~~~~eAl~~~~~al~l~p~-~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~ 418 (591)
..++...+++++|+..++++++++|+ +..+..+|.++..+|++++|+.+|+++++++|+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~ 62 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDD 62 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc
Confidence 45777888888888888888888885 6777778888888888888888888888888876
No 173
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.45 E-value=5.6e-06 Score=78.97 Aligned_cols=180 Identities=13% Similarity=0.093 Sum_probs=117.1
Q ss_pred HHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHhcC----CcHHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHH
Q 007721 295 ARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYN----LGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRA 370 (591)
Q Consensus 295 a~~~~~~G~~~~A~~~~~~aI~~~~~~g~a~~~r~~y~----~~~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~e 370 (591)
|..+-.+|-+.-|..+|+++++++|+.+.++.-.|.|. ..+.|.+.|+.+++|||+.-++..|||..+.--||+.-
T Consensus 72 GvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~L 151 (297)
T COG4785 72 GVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKL 151 (297)
T ss_pred cchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHh
Confidence 44444555555555566666666666666655555432 22778889999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHcCCHHHHHHH-HHHHHhcCCcch----h--hhhhchHhHHHHHHHhhhcccCc
Q 007721 371 AISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRD-TLALLALESNYM----M--FHGRVSGDHLVKLLNHHVRSWSP 443 (591)
Q Consensus 371 Al~~~~~al~l~p~~~~~~~r~~~~~~~g~~~~A~~d-~~~al~l~P~~~----~--~~~~~~~~~~~~~l~~~~~~~~~ 443 (591)
|..++.+--+-+|+.+.-.+.-.+....-|..+|... .+|+-.++-++= . |.|+.....
T Consensus 152 Aq~d~~~fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e~-------------- 217 (297)
T COG4785 152 AQDDLLAFYQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEET-------------- 217 (297)
T ss_pred hHHHHHHHHhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccHHH--------------
Confidence 9999999999999633212222233333445555443 345555553321 0 222222211
Q ss_pred hhhhhhhhhccccccccchHHHHHHHHHcCCCC-------chhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCc
Q 007721 444 ADCWIKLYDRWSSVDDIGSLAVINQMLINDPGK-------SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSS 509 (591)
Q Consensus 444 a~~~~~l~~~~~~~~~~~al~~~~~al~~~P~~-------~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~ 509 (591)
.+.++.+-.-++ .++||.+|.-...+|...+|...|..|+.-+--
T Consensus 218 ---------------------l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannVy 269 (297)
T COG4785 218 ---------------------LMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNVY 269 (297)
T ss_pred ---------------------HHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhHH
Confidence 222332222222 467999999999999999999999999987644
No 174
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.44 E-value=1.2e-05 Score=78.32 Aligned_cols=165 Identities=14% Similarity=0.145 Sum_probs=114.4
Q ss_pred ChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhhch
Q 007721 351 LSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS----VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVS 426 (591)
Q Consensus 351 ~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~----~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~~ 426 (591)
.+..++..|...++.|++.+|+..|++++..-|. +++....|.++...|++++|+..|++-++..|++.. ..-
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~---~~~ 80 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK---ADY 80 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT---HHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc---hhh
Confidence 3567889999999999999999999999999884 456677899999999999999999999999998752 111
Q ss_pred HhHHHHHHHhhhcccCchhhhhhhhhcc----cccccc-chHHHHHHHHHcCCCCchhH-----------------hhhH
Q 007721 427 GDHLVKLLNHHVRSWSPADCWIKLYDRW----SSVDDI-GSLAVINQMLINDPGKSFLR-----------------FRQS 484 (591)
Q Consensus 427 ~~~~~~~l~~~~~~~~~a~~~~~l~~~~----~~~~~~-~al~~~~~al~~~P~~~~~~-----------------~~~g 484 (591)
+...++... ....... .+.... .|+..++..+..-|++..+- +..|
T Consensus 81 A~Y~~g~~~------------~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia 148 (203)
T PF13525_consen 81 ALYMLGLSY------------YKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIA 148 (203)
T ss_dssp HHHHHHHHH------------HHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH------------HHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222110 0110000 000111 25678888899999887663 3456
Q ss_pred HHHHHhCCHHHHHHHHHHHHhcCCch---HHHHHhHHHHHHHcCCHHHH
Q 007721 485 LLLLRLNCQKAAMRCLRLARNHSSSE---HERLVYEGWILYDTGHREEA 530 (591)
Q Consensus 485 ~~l~~l~~~~eA~~~~~~Al~l~p~~---~~a~~~~G~~l~~~g~~eeA 530 (591)
..+.+.|.+.+|+.-++.+++.-|+. .+|+..++..++.+|..+.|
T Consensus 149 ~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 149 RFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 67777999999999999999998885 57788999999999998844
No 175
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.44 E-value=1.3e-05 Score=80.44 Aligned_cols=196 Identities=11% Similarity=0.015 Sum_probs=124.5
Q ss_pred CChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCChH----HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhhc
Q 007721 350 TLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVD----CLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRV 425 (591)
Q Consensus 350 ~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~~~----~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~ 425 (591)
..+..++..|..++..|++++|+..|++++...|... +.+..|.++..+|++++|+..|++.+++.|++.. ..
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~---~~ 106 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN---ID 106 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc---hH
Confidence 3566788899999999999999999999999999632 3366889999999999999999999999999842 12
Q ss_pred hHhHHHHHHHhhhcccCchhhhhhhhhccccccc-----cchHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHH
Q 007721 426 SGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDD-----IGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCL 500 (591)
Q Consensus 426 ~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~-----~~al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~ 500 (591)
-+..+++....... .-|++-+......++ ..|+..+++.+..-|++.-+- +|..-
T Consensus 107 ~a~Y~~g~~~~~~~-----~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~--------------~A~~r- 166 (243)
T PRK10866 107 YVLYMRGLTNMALD-----DSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTT--------------DATKR- 166 (243)
T ss_pred HHHHHHHHhhhhcc-----hhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHH--------------HHHHH-
Confidence 23333332211110 000000000001111 125667888888888774421 12111
Q ss_pred HHHHhcCCchHHHHHhHHHHHHHcCCHHHHHHHHHHhhcccccHH----HHHHHHHHhhhcCCCCCchhHHHHHH
Q 007721 501 RLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE----AFFLKAYILADTNLDPESSTYVIQLL 571 (591)
Q Consensus 501 ~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (591)
...+.-.=++--...|--+++.|.+..|+..++..+.-=|+.. |-++.+-++.+-.+. +....+.++|
T Consensus 167 --l~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~-~~a~~~~~~l 238 (243)
T PRK10866 167 --LVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLN-AQADKVAKII 238 (243)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCCh-HHHHHHHHHH
Confidence 1111111233335778889999999999999999998766543 666766666665554 3444444444
No 176
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=3.3e-06 Score=84.82 Aligned_cols=121 Identities=14% Similarity=0.108 Sum_probs=102.9
Q ss_pred CHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhhchHhHHHHHHHhhhcccCchh
Q 007721 367 QIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPAD 445 (591)
Q Consensus 367 ~~~eAl~~~~~al~l~p~-~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~ 445 (591)
..++-++-.+.-|+.||+ .+.|..+|-+|..+|++..|+..|++|++|+|+++
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~-------------------------- 190 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNP-------------------------- 190 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCH--------------------------
Confidence 577888889999999995 89999999999999999999999999999999873
Q ss_pred hhhhhhhccccccccchHHHHHHHHHcCCCCchhHhhhHHHHHHhC---CHHHHHHHHHHHHhcCCchHHHHHhHHHHHH
Q 007721 446 CWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLN---CQKAAMRCLRLARNHSSSEHERLVYEGWILY 522 (591)
Q Consensus 446 ~~~~l~~~~~~~~~~~al~~~~~al~~~P~~~~~~~~~g~~l~~l~---~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~ 522 (591)
+.+-..|.+|.... .-.+|...+++|++++|+|..+++++|..++
T Consensus 191 --------------------------------~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~af 238 (287)
T COG4235 191 --------------------------------EILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAF 238 (287)
T ss_pred --------------------------------HHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 22223344444433 2347999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHhhcccccHH
Q 007721 523 DTGHREEALSRAEKSISIERTFE 545 (591)
Q Consensus 523 ~~g~~eeAl~~~e~ai~l~~~~~ 545 (591)
.+|+|.+|+..++.-++..|...
T Consensus 239 e~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 239 EQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HcccHHHHHHHHHHHHhcCCCCC
Confidence 99999999999999999877654
No 177
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.38 E-value=1.9e-06 Score=75.81 Aligned_cols=84 Identities=17% Similarity=0.165 Sum_probs=80.0
Q ss_pred hHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCc----hHHHHHhHHHHHHHcCCHHHHHHHHHHh
Q 007721 462 SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSS----EHERLVYEGWILYDTGHREEALSRAEKS 537 (591)
Q Consensus 462 al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~----~~~a~~~~G~~l~~~g~~eeAl~~~e~a 537 (591)
|+.-|.|+|.+.|..+.+|+|++-++-..|++++|+.++++|+++.-+ -..+++.+|.++-.+|+-|.|-..|+.|
T Consensus 62 AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~A 141 (175)
T KOG4555|consen 62 ALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAA 141 (175)
T ss_pred HHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHH
Confidence 799999999999999999999999999999999999999999999866 4678999999999999999999999999
Q ss_pred hcccccHH
Q 007721 538 ISIERTFE 545 (591)
Q Consensus 538 i~l~~~~~ 545 (591)
-.+-.+|.
T Consensus 142 A~LGS~FA 149 (175)
T KOG4555|consen 142 AQLGSKFA 149 (175)
T ss_pred HHhCCHHH
Confidence 99998887
No 178
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.34 E-value=4.1e-07 Score=74.09 Aligned_cols=68 Identities=21% Similarity=0.156 Sum_probs=58.9
Q ss_pred CCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcC-------CchHHHHHhHHHHHHHcCCHHHHHHHHHHhhccc
Q 007721 474 PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHS-------SSEHERLVYEGWILYDTGHREEALSRAEKSISIE 541 (591)
Q Consensus 474 P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~-------p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l~ 541 (591)
|.-+.+++++|.++..+|++++|+..|++|+++. |.-+..++++|++++.+|++++|++.+++|++|.
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 3446789999999999999999999999999662 2347789999999999999999999999999874
No 179
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.33 E-value=9.4e-05 Score=73.78 Aligned_cols=301 Identities=15% Similarity=0.109 Sum_probs=183.8
Q ss_pred ccchhHHHHHHHHhhcchhhhHHHHHHHHhhhHHhhhccHHHHHHHHHHHhhccccchh--hhhHHHHHHhCChHHHHHH
Q 007721 233 RVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSL--AGLARAKYKVGQQYSAYKL 310 (591)
Q Consensus 233 ~r~~~~v~lLe~~~~~~~~~~~~~~a~~~lG~~~~~~g~~~eA~~~f~~Al~~~~~~a~--~~la~~~~~~G~~~~A~~~ 310 (591)
.|...+++++....+-.+. ...++..+|-+|....+|.+|..||++.-..-|.++- ...+..++..|.+..|+.-
T Consensus 24 ~ry~DaI~~l~s~~Er~p~---~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV 100 (459)
T KOG4340|consen 24 ARYADAIQLLGSELERSPR---SRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRV 100 (459)
T ss_pred hhHHHHHHHHHHHHhcCcc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 4466677777654433332 2456788999999999999999999986666554332 2335566677777666543
Q ss_pred HHHHHHhcCCC-HHHHHHHH--hcCCcHHHHHHHHHHHHcCC--CChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCC-C
Q 007721 311 INSIISEHKPT-GWMYQERS--LYNLGREKIVDLNYASELDP--TLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-S 384 (591)
Q Consensus 311 ~~~aI~~~~~~-g~a~~~r~--~y~~~~eA~~dl~~Ai~LdP--~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p-~ 384 (591)
.... ...+++ ....+-.+ .|..+ -+.--+..++--| +.+....+.|-++.+.|+|++|+.-|+.|+++.. +
T Consensus 101 ~~~~-~D~~~L~~~~lqLqaAIkYse~--Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyq 177 (459)
T KOG4340|consen 101 AFLL-LDNPALHSRVLQLQAAIKYSEG--DLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQ 177 (459)
T ss_pred HHHh-cCCHHHHHHHHHHHHHHhcccc--cCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCC
Confidence 3221 111211 11111111 12221 1111233445556 6788899999999999999999999999999977 5
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchh--------------hhhhch---------HhHHHHHHHhhhccc
Q 007721 385 VDCLELRAWLFIAADDYESALRDTLALLALESNYMM--------------FHGRVS---------GDHLVKLLNHHVRSW 441 (591)
Q Consensus 385 ~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~--------------~~~~~~---------~~~~~~~l~~~~~~~ 441 (591)
+-..++.+.++...|+++.|+.....+++..-.+-+ +.|+.. +.++...+.-..+++
T Consensus 178 pllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~ 257 (459)
T KOG4340|consen 178 PLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNY 257 (459)
T ss_pred chhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccH
Confidence 777899999999999999999998888775422211 222222 333333333333333
Q ss_pred CchhhhhhhhhccccccccchHHHHHHHHHcCCC-----CchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHh
Q 007721 442 SPADCWIKLYDRWSSVDDIGSLAVINQMLINDPG-----KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVY 516 (591)
Q Consensus 442 ~~a~~~~~l~~~~~~~~~~~al~~~~~al~~~P~-----~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~ 516 (591)
+.|. +.-+.+-|+ +|....|++.. ..-+++-+..+-++-.+.++|--.|..-|
T Consensus 258 eAA~---------------------eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPfP~ETFAN 315 (459)
T KOG4340|consen 258 EAAQ---------------------EALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPFPPETFAN 315 (459)
T ss_pred HHHH---------------------HHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCCChHHHHH
Confidence 3331 111222222 34455565433 23466777888888888888877777777
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhcccccHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHhcCCC
Q 007721 517 EGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPS 579 (591)
Q Consensus 517 ~G~~l~~~g~~eeAl~~~e~ai~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 579 (591)
+=+++.+..-|+-|-.. ++-+|+..=+|| |.|...||+--.-||.
T Consensus 316 lLllyCKNeyf~lAADv----LAEn~~lTyk~L--------------~~Yly~LLdaLIt~qT 360 (459)
T KOG4340|consen 316 LLLLYCKNEYFDLAADV----LAENAHLTYKFL--------------TPYLYDLLDALITCQT 360 (459)
T ss_pred HHHHHhhhHHHhHHHHH----HhhCcchhHHHh--------------hHHHHHHHHHHHhCCC
Confidence 77777777777666543 344566555554 3445556665555554
No 180
>PRK15331 chaperone protein SicA; Provisional
Probab=98.32 E-value=7.8e-06 Score=75.59 Aligned_cols=76 Identities=11% Similarity=-0.062 Sum_probs=47.2
Q ss_pred CchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHHHHHHHHhhcccccHHHHHHHHH
Q 007721 476 KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAY 552 (591)
Q Consensus 476 ~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l~~~~~~~~~~~~ 552 (591)
+++.|+.+|.++..++.+++|+..|-.|..++++++...++.|.|++.+|+.++|...|+-++. +|....-.-||-
T Consensus 70 n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~A~ 145 (165)
T PRK15331 70 NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESLRAKAL 145 (165)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHHHHHH
Confidence 3455666666666666666666666666666666666666666666666666666666666666 455444444443
No 181
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.31 E-value=2.7e-05 Score=79.33 Aligned_cols=232 Identities=16% Similarity=0.157 Sum_probs=134.6
Q ss_pred hhhHHhhhccHHHHHHHHHHHhhc-ccc----chhhhhHHHHHHhCChHHHHHHHHHHHHhcCC------CHHHHHHHHh
Q 007721 262 LGCVMFEREEYKDACYYFEAAADA-GHI----YSLAGLARAKYKVGQQYSAYKLINSIISEHKP------TGWMYQERSL 330 (591)
Q Consensus 262 lG~~~~~~g~~~eA~~~f~~Al~~-~~~----~a~~~la~~~~~~G~~~~A~~~~~~aI~~~~~------~g~a~~~r~~ 330 (591)
-|.-.....++.+|+.-+.+.++. +.. ..+..+..+...+|.+.+++..--..|..... .-.+|.+.
T Consensus 12 ~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnl-- 89 (518)
T KOG1941|consen 12 KGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNL-- 89 (518)
T ss_pred HHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 344444455556666555555443 111 11222344556666666554443333332111 11222222
Q ss_pred cCCcHHHHHHHHHHHHcC-------CCC-----hHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCCh-------HHHHHH
Q 007721 331 YNLGREKIVDLNYASELD-------PTL-----SFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSV-------DCLELR 391 (591)
Q Consensus 331 y~~~~eA~~dl~~Ai~Ld-------P~~-----~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~~-------~~~~~r 391 (591)
.++.+.+.+|++++.+- -+. -++...+|++...++.++.+++.|++|+.+..+. .....+
T Consensus 90 -ar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~L 168 (518)
T KOG1941|consen 90 -ARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSL 168 (518)
T ss_pred -HHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhH
Confidence 22244444555544431 111 1455567777777777777777777777764421 112345
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccchHHHHHHHHH
Q 007721 392 AWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLI 471 (591)
Q Consensus 392 ~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~ 471 (591)
|-++-.++|+++|+-.-.+|.+|--.+- ++| +..-++++
T Consensus 169 gslf~~l~D~~Kal~f~~kA~~lv~s~~-------------------------------------l~d---~~~kyr~~- 207 (518)
T KOG1941|consen 169 GSLFAQLKDYEKALFFPCKAAELVNSYG-------------------------------------LKD---WSLKYRAM- 207 (518)
T ss_pred HHHHHHHHhhhHHhhhhHhHHHHHHhcC-------------------------------------cCc---hhHHHHHH-
Confidence 5666666666666666666666655440 011 11112222
Q ss_pred cCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCc------hHHHHHhHHHHHHHcCCHHHHHHHHHHhhcccccH
Q 007721 472 NDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSS------EHERLVYEGWILYDTGHREEALSRAEKSISIERTF 544 (591)
Q Consensus 472 ~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~------~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l~~~~ 544 (591)
..+.++.+|-++|+.-.|++..+.|.++.-. .+.-+...|-|+-..|+.|.||+.||+|+.+.++-
T Consensus 208 -------~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~ 279 (518)
T KOG1941|consen 208 -------SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASL 279 (518)
T ss_pred -------HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhh
Confidence 2467889999999999999999999887643 45556778999999999999999999999987764
No 182
>PRK15331 chaperone protein SicA; Provisional
Probab=98.28 E-value=1.4e-05 Score=74.00 Aligned_cols=109 Identities=12% Similarity=0.074 Sum_probs=73.8
Q ss_pred HHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhh
Q 007721 344 ASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFH 422 (591)
Q Consensus 344 Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p-~~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~ 422 (591)
+..+.++.-+..+..|.-+...|++++|...|+-...++| +++-+..+|.++..+|+|++|+..|-.|..+++++
T Consensus 29 l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~d---- 104 (165)
T PRK15331 29 VHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKND---- 104 (165)
T ss_pred HhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCC----
Confidence 3444455555566667777777777777777777777777 45655667777777777777777666666665543
Q ss_pred hhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccchHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHH
Q 007721 423 GRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRL 502 (591)
Q Consensus 423 ~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~ 502 (591)
+...|..|.+++.+|+.++|+.+|..
T Consensus 105 ------------------------------------------------------p~p~f~agqC~l~l~~~~~A~~~f~~ 130 (165)
T PRK15331 105 ------------------------------------------------------YRPVFFTGQCQLLMRKAAKARQCFEL 130 (165)
T ss_pred ------------------------------------------------------CCccchHHHHHHHhCCHHHHHHHHHH
Confidence 34466777788888888888888888
Q ss_pred HHhcCCchH
Q 007721 503 ARNHSSSEH 511 (591)
Q Consensus 503 Al~l~p~~~ 511 (591)
|++ .|.++
T Consensus 131 a~~-~~~~~ 138 (165)
T PRK15331 131 VNE-RTEDE 138 (165)
T ss_pred HHh-CcchH
Confidence 877 45533
No 183
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.22 E-value=9.2e-07 Score=93.37 Aligned_cols=85 Identities=20% Similarity=0.225 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007721 335 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLA 413 (591)
Q Consensus 335 ~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~-~~~~~~r~~~~~~~g~~~~A~~d~~~al~ 413 (591)
+.|+.-|.+||+++|+.+..|.+|+.++...+.+.+|+.|+++||+++|. ..+|+.||.++..++.+.+|+.+|++...
T Consensus 21 d~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~ 100 (476)
T KOG0376|consen 21 DVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKK 100 (476)
T ss_pred HHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHHhhh
Confidence 77888888888888888888888888888888888888888888888886 56666778888888888888888888888
Q ss_pred cCCcch
Q 007721 414 LESNYM 419 (591)
Q Consensus 414 l~P~~~ 419 (591)
+.|+..
T Consensus 101 l~Pnd~ 106 (476)
T KOG0376|consen 101 LAPNDP 106 (476)
T ss_pred cCcCcH
Confidence 888864
No 184
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.22 E-value=1.3e-06 Score=96.30 Aligned_cols=68 Identities=18% Similarity=0.113 Sum_probs=55.4
Q ss_pred CCCCceEEEEcCeEEEhhHHHHhhcCHHHHHhhcCCCCCCCC------------ceeEecCCCCCHHHHHHHHHHHhcCC
Q 007721 52 EEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKR------------KTIDFSHDGVSVEGLRAVEVYTRTSR 119 (591)
Q Consensus 52 ~~~~~V~f~v~g~~~~aHr~iLaa~S~yF~amf~~~~~Es~~------------~~I~l~~~~vs~~~~~~ll~ylYtg~ 119 (591)
|...+|||.||++.|+|||.||+++|++||.+|-....-+.. .+|.+ .++.|..|+.+|+|+||+.
T Consensus 556 ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~v--e~i~p~mfe~lL~~iYtdt 633 (1267)
T KOG0783|consen 556 DSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRV--EDIPPLMFEILLHYIYTDT 633 (1267)
T ss_pred cccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeee--ccCCHHHHHHHHHHHhccc
Confidence 445569999999999999999999999999999754333222 24446 8999999999999999996
Q ss_pred CC
Q 007721 120 VD 121 (591)
Q Consensus 120 ~~ 121 (591)
+-
T Consensus 634 ~~ 635 (1267)
T KOG0783|consen 634 LL 635 (1267)
T ss_pred cc
Confidence 43
No 185
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.20 E-value=0.00018 Score=73.21 Aligned_cols=251 Identities=13% Similarity=0.115 Sum_probs=141.3
Q ss_pred hhhHHhhhccHHHHHHHHHHHhhcc--ccchhhhhHHHHHHhCChHHHHHHHHHHHHhcCCCHH---HHHHHHhcCCcHH
Q 007721 262 LGCVMFEREEYKDACYYFEAAADAG--HIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGW---MYQERSLYNLGRE 336 (591)
Q Consensus 262 lG~~~~~~g~~~eA~~~f~~Al~~~--~~~a~~~la~~~~~~G~~~~A~~~~~~aI~~~~~~g~---a~~~r~~y~~~~e 336 (591)
+|-+++..|+|++|...|..+.+.. +.....+++-.++-+|.+.+|-....+ .|+.+. ...+.+.-.-.++
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~k----a~k~pL~~RLlfhlahklndEk 138 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEK----APKTPLCIRLLFHLAHKLNDEK 138 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhh----CCCChHHHHHHHHHHHHhCcHH
Confidence 5778899999999999998877763 334567788899999998887544333 222221 1111211111244
Q ss_pred HHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCChHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcC
Q 007721 337 KIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLE-LRAWLFIAADDYESALRDTLALLALE 415 (591)
Q Consensus 337 A~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~~~~~~-~r~~~~~~~g~~~~A~~d~~~al~l~ 415 (591)
.|..|..-+. +..+-...+|.+..+.-.|+|||+.|.+++.-+|+..+++ +.+.+|.++.=|+-+-.-+.--++--
T Consensus 139 ~~~~fh~~Lq---D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~ 215 (557)
T KOG3785|consen 139 RILTFHSSLQ---DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF 215 (557)
T ss_pred HHHHHHHHHh---hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC
Confidence 5555544332 2234555666666666678888888888888888766654 47778888887877777777777777
Q ss_pred Ccchh------------hhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccchHHHHHHHHHcCCCCchhHhhh
Q 007721 416 SNYMM------------FHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQ 483 (591)
Q Consensus 416 P~~~~------------~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~~P~~~~~~~~~ 483 (591)
|+... +.||.+......+.+..-+.+..+..+..-.-..-+ .--+||.++---+.. =|+++.|+
T Consensus 216 pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFr-ngEgALqVLP~L~~~---IPEARlNL 291 (557)
T KOG3785|consen 216 PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFR-NGEGALQVLPSLMKH---IPEARLNL 291 (557)
T ss_pred CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEe-CCccHHHhchHHHhh---ChHhhhhh
Confidence 76532 333333333333333333333333211110000000 111123322222222 24556666
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCC
Q 007721 484 SLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGH 526 (591)
Q Consensus 484 g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~ 526 (591)
..-++++|+.+||.... -.++|..+.-+...|.+...+|+
T Consensus 292 ~iYyL~q~dVqeA~~L~---Kdl~PttP~EyilKgvv~aalGQ 331 (557)
T KOG3785|consen 292 IIYYLNQNDVQEAISLC---KDLDPTTPYEYILKGVVFAALGQ 331 (557)
T ss_pred eeeecccccHHHHHHHH---hhcCCCChHHHHHHHHHHHHhhh
Confidence 66666666666665543 35666666666666666666654
No 186
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.18 E-value=1.9e-06 Score=70.08 Aligned_cols=67 Identities=19% Similarity=0.183 Sum_probs=56.9
Q ss_pred CCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcC----CC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 007721 349 PTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFK----LS----VDCLELRAWLFIAADDYESALRDTLALLALE 415 (591)
Q Consensus 349 P~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~----p~----~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~ 415 (591)
|+.+.+|.++|.++.++|++++|+..|++++++. ++ ..++.+.|.++..+|++++|+..|++++++.
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 4567889999999999999999999999999772 22 2346778999999999999999999999874
No 187
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.17 E-value=1.4e-06 Score=59.15 Aligned_cols=32 Identities=19% Similarity=0.189 Sum_probs=27.2
Q ss_pred HHHHHhcCCchHHHHHhHHHHHHHcCCHHHHH
Q 007721 500 LRLARNHSSSEHERLVYEGWILYDTGHREEAL 531 (591)
Q Consensus 500 ~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl 531 (591)
|++|++++|+++++++++|++|+..|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 67888888888888888888888888888886
No 188
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=98.17 E-value=1.8e-06 Score=74.19 Aligned_cols=87 Identities=13% Similarity=0.115 Sum_probs=66.9
Q ss_pred HHHHHHHHHHhChHHHHHHHHHHHHhhhHhhhCCccccccccCchhhhhH----hhhcchhHHHHHHHHHhhhhccccch
Q 007721 161 ALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVMKIFCSSEATERL----ANVGHASFLLYYFLSQVAMEKDRVSN 236 (591)
Q Consensus 161 ~~~ll~~A~~~~~~~L~~~c~~~i~~n~~~v~~~~~f~~l~~~~~~~~~~----~~~~~~~~~~~a~Ls~v~~d~~~r~~ 236 (591)
|+.++.+|..|++++|.+.|.+||..||.++.++++|.++-. .....-+ ..+..+..++.+++.|+.++...|.+
T Consensus 1 C~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~L~~-~~l~~iL~~~~l~v~~E~~v~~av~~W~~~~~~~r~~ 79 (103)
T PF07707_consen 1 CLSIYRLAEKYGLEELAEACLRFIAKNFNEVSKSDEFLELPF-DQLIEILSSDDLNVSSEDDVFEAVLRWLKHNPENREE 79 (103)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTHHHHTTSHHHHCS-H-HHHHHHHHTSS--ECTCCCHHHHHHHHHHCTHHHHTT
T ss_pred ChhHHHHHHHcChHHHHHHHHHHHHHHHHHHccchhhhcCCH-HHHHHHHhccccccccHHHHHHHHHHHHHhCHHHHHH
Confidence 899999999999999999999999999999999999998621 1111111 12556778899999999999887777
Q ss_pred hHHHHHHHHhhcc
Q 007721 237 TTVMLLERLGECS 249 (591)
Q Consensus 237 ~~v~lLe~~~~~~ 249 (591)
+...+++. +|++
T Consensus 80 ~~~~Ll~~-iR~~ 91 (103)
T PF07707_consen 80 HLKELLSC-IRFP 91 (103)
T ss_dssp THHHHHCC-CHHH
T ss_pred HHHHHHHh-CCcc
Confidence 88887754 5554
No 189
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.16 E-value=5.7e-07 Score=91.04 Aligned_cols=84 Identities=23% Similarity=0.223 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007721 335 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLA 413 (591)
Q Consensus 335 ~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~-~~~~~~r~~~~~~~g~~~~A~~d~~~al~ 413 (591)
+.|++.|.+||+++|.++..|.+||.+++.+++...||.+++.||+++|+ ..-|-.||.++..+|+|++|-.|++.|.+
T Consensus 131 ~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~k 210 (377)
T KOG1308|consen 131 DTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACK 210 (377)
T ss_pred hhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHh
Confidence 88999999999999999999999999999999999999999999999998 45566799999999999999999999999
Q ss_pred cCCcc
Q 007721 414 LESNY 418 (591)
Q Consensus 414 l~P~~ 418 (591)
++=+-
T Consensus 211 ld~dE 215 (377)
T KOG1308|consen 211 LDYDE 215 (377)
T ss_pred ccccH
Confidence 98653
No 190
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.15 E-value=0.00011 Score=75.34 Aligned_cols=195 Identities=16% Similarity=0.093 Sum_probs=128.6
Q ss_pred HHHhHHHHHHHhCCHHHHHHHHHHHHhcCC--C--h---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhhch
Q 007721 354 PYKYRAVAKMEEGQIRAAISEIDRIIVFKL--S--V---DCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVS 426 (591)
Q Consensus 354 ay~~rg~~l~~l~~~~eAl~~~~~al~l~p--~--~---~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~~ 426 (591)
.|..-|+.+...|++++|...|.+|....- + . ..+..-+.++... ++++|+..|++|+++-=.. |+..
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~----G~~~ 111 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREA----GRFS 111 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHC----T-HH
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhc----CcHH
Confidence 345557788999999999999999987732 1 1 1223333455444 9999999999999864322 1100
Q ss_pred HhHHHHHHHhhhcccCchhhhhhhhhccccc-cccc-hHHHHHHHHHcCCC--C----chhHhhhHHHHHHhCCHHHHHH
Q 007721 427 GDHLVKLLNHHVRSWSPADCWIKLYDRWSSV-DDIG-SLAVINQMLINDPG--K----SFLRFRQSLLLLRLNCQKAAMR 498 (591)
Q Consensus 427 ~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~-~~~~-al~~~~~al~~~P~--~----~~~~~~~g~~l~~l~~~~eA~~ 498 (591)
..|.++..+...+... ++++ |+..|.+|+++--. . ...+.+.|.++.++|++++|+.
T Consensus 112 ---------------~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~ 176 (282)
T PF14938_consen 112 ---------------QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIE 176 (282)
T ss_dssp ---------------HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred ---------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHH
Confidence 0133334444444444 4455 68888888887322 2 3446788999999999999999
Q ss_pred HHHHHHhcCCc-------hHHHHHhHHHHHHHcCCHHHHHHHHHHhhcccccH----HHHHHHHHHhhhcCCCCCchhHH
Q 007721 499 CLRLARNHSSS-------EHERLVYEGWILYDTGHREEALSRAEKSISIERTF----EAFFLKAYILADTNLDPESSTYV 567 (591)
Q Consensus 499 ~~~~Al~l~p~-------~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 567 (591)
.|++.....-+ -.+.+..-+.|.+.+|+.-.|...+++...++|+| |.-|+....-+=.+-|++.=+.+
T Consensus 177 ~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~a 256 (282)
T PF14938_consen 177 IYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEA 256 (282)
T ss_dssp HHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHH
T ss_pred HHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 99999875422 22456788999999999999999999999999865 46666666655555566554443
Q ss_pred H
Q 007721 568 I 568 (591)
Q Consensus 568 ~ 568 (591)
|
T Consensus 257 v 257 (282)
T PF14938_consen 257 V 257 (282)
T ss_dssp C
T ss_pred H
Confidence 3
No 191
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.15 E-value=0.00023 Score=70.25 Aligned_cols=167 Identities=15% Similarity=0.218 Sum_probs=134.5
Q ss_pred CCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhhchH
Q 007721 348 DPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSG 427 (591)
Q Consensus 348 dP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~~~ 427 (591)
+-++.-...--|.+++.-|++++|+....+.. +.++...--.++.++.+.+-|...+++..+++-+. .
T Consensus 104 ~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~----~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~--------t 171 (299)
T KOG3081|consen 104 DGSNLIDLLLAAIIYMHDGDFDEALKALHLGE----NLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDA--------T 171 (299)
T ss_pred cchhHHHHHHhhHHhhcCCChHHHHHHHhccc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH--------H
Confidence 33344555667889999999999998776622 33444445578999999999999999999999875 2
Q ss_pred hHHHHHHHhhhcccCchhhhhhhhhccccccccchHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcC
Q 007721 428 DHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHS 507 (591)
Q Consensus 428 ~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~ 507 (591)
...+ |.+|+++..--..+.| |.=+|+.+=+..|..+.+.+.++.+...+||++||...++.||.-+
T Consensus 172 LtQL------------A~awv~la~ggek~qd--AfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 172 LTQL------------AQAWVKLATGGEKIQD--AFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred HHHH------------HHHHHHHhccchhhhh--HHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 2211 7778888776555443 3668888888889999999999999999999999999999999999
Q ss_pred CchHHHHHhHHHHHHHcCCHHHHHHHHHHhhcc
Q 007721 508 SSEHERLVYEGWILYDTGHREEALSRAEKSISI 540 (591)
Q Consensus 508 p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l 540 (591)
|++++.+.|+=.+-..+|.-.++...+---+..
T Consensus 238 ~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 238 AKDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 999999999999999999998888877655553
No 192
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.14 E-value=3.8e-06 Score=88.81 Aligned_cols=122 Identities=16% Similarity=0.161 Sum_probs=90.8
Q ss_pred HhHHHHHHHhCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhhchHhHHHHHH
Q 007721 356 KYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLL 434 (591)
Q Consensus 356 ~~rg~~l~~l~~~~eAl~~~~~al~l~p~-~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~~~~~~~~~l 434 (591)
.+-|+-....+.++.|+..|.|||+++|+ ...+.+|+.++.+.+++-+|+.|..+|++++|.+
T Consensus 8 k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~---------------- 71 (476)
T KOG0376|consen 8 KNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTY---------------- 71 (476)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchh----------------
Confidence 34555666677788888888888888886 4545677788888888888888777777777766
Q ss_pred HhhhcccCchhhhhhhhhccccccccchHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHH
Q 007721 435 NHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERL 514 (591)
Q Consensus 435 ~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~ 514 (591)
..+|+++|.+-.+++++.+|+.+++....+.|++.++.
T Consensus 72 ------------------------------------------~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~ 109 (476)
T KOG0376|consen 72 ------------------------------------------IKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDAT 109 (476)
T ss_pred ------------------------------------------hheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHH
Confidence 35678888999999999999999999999999999887
Q ss_pred HhHHHHHHHcCCHHHHHHHHHHhhcc
Q 007721 515 VYEGWILYDTGHREEALSRAEKSISI 540 (591)
Q Consensus 515 ~~~G~~l~~~g~~eeAl~~~e~ai~l 540 (591)
--.-.|-+-..+ ..||+||.-
T Consensus 110 r~~~Ec~~~vs~-----~~fe~ai~~ 130 (476)
T KOG0376|consen 110 RKIDECNKIVSE-----EKFEKAILT 130 (476)
T ss_pred HHHHHHHHHHHH-----HhhhhcccC
Confidence 666555443322 245555543
No 193
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.14 E-value=0.00063 Score=76.76 Aligned_cols=227 Identities=15% Similarity=0.050 Sum_probs=155.1
Q ss_pred hCChHHHHHHHHHHHHhcCCCHHHHHHHH----hcCCcHHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHH
Q 007721 301 VGQQYSAYKLINSIISEHKPTGWMYQERS----LYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEID 376 (591)
Q Consensus 301 ~G~~~~A~~~~~~aI~~~~~~g~a~~~r~----~y~~~~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~ 376 (591)
.+++..|+....+....+|+...+..-.+ ..++|++|...++..-.+-|++....--+-++|.++|++++|...|.
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye 101 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYE 101 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 45556666667777777766433332221 23556888888888888888999999999999999999999999999
Q ss_pred HHHhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhcccc
Q 007721 377 RIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSS 456 (591)
Q Consensus 377 ~al~l~p~~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~ 456 (591)
|+++.+|+.+..+....+|.+-++|.+=-+.=-+.-+.-|+.+.|++.+.-..+++ ....+...
T Consensus 102 ~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs-----~~~~~~~~----------- 165 (932)
T KOG2053|consen 102 RANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQS-----IFSENELL----------- 165 (932)
T ss_pred HHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHh-----ccCCcccc-----------
Confidence 99999999666666777888888876533333333337788887888766555443 23333331
Q ss_pred ccccc-hHH--HHHHHHHcC-CCCchh-HhhhHHHHHHhCCHHHHHHHH-HHHHhcCCchHHHHHhHHHHH-HHcCCHHH
Q 007721 457 VDDIG-SLA--VINQMLIND-PGKSFL-RFRQSLLLLRLNCQKAAMRCL-RLARNHSSSEHERLVYEGWIL-YDTGHREE 529 (591)
Q Consensus 457 ~~~~~-al~--~~~~al~~~-P~~~~~-~~~~g~~l~~l~~~~eA~~~~-~~Al~l~p~~~~a~~~~G~~l-~~~g~~ee 529 (591)
+.+- +++ .+++.++.. +-...+ -+-.=.+|..+|.++||...+ ..-.+..|.....+.+++.-+ -.++++.+
T Consensus 166 -~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~ 244 (932)
T KOG2053|consen 166 -DPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQE 244 (932)
T ss_pred -cchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHH
Confidence 1111 233 667777776 222221 223345777899999999999 444455566666666666554 55699999
Q ss_pred HHHHHHHhhcccccH
Q 007721 530 ALSRAEKSISIERTF 544 (591)
Q Consensus 530 Al~~~e~ai~l~~~~ 544 (591)
-.+.-.|.+.-.|+.
T Consensus 245 l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 245 LFELSSRLLEKGNDD 259 (932)
T ss_pred HHHHHHHHHHhCCcc
Confidence 999999999999986
No 194
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.14 E-value=0.00018 Score=70.09 Aligned_cols=149 Identities=20% Similarity=0.139 Sum_probs=103.9
Q ss_pred HHHHHHhhhHHhhhccHHHHHHHHHHHhhccc-----cchhhhhHHHHHHhCChHHHHHHHHHHHHhcCCC---HHHHHH
Q 007721 256 MLALHQLGCVMFEREEYKDACYYFEAAADAGH-----IYSLAGLARAKYKVGQQYSAYKLINSIISEHKPT---GWMYQE 327 (591)
Q Consensus 256 ~~a~~~lG~~~~~~g~~~eA~~~f~~Al~~~~-----~~a~~~la~~~~~~G~~~~A~~~~~~aI~~~~~~---g~a~~~ 327 (591)
..+++..|...+..|+|.+|+..|++.+...| ..+...+|.+++..|++..|+..+.+.|..+|+. ..+++.
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~ 84 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYM 84 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHH
Confidence 45678899999999999999999998877633 2367778889999999999999999999998863 445554
Q ss_pred HHhc-----------CC----cHHHHHHHHHHHHcCCCChHH-----------------HHhHHHHHHHhCCHHHHHHHH
Q 007721 328 RSLY-----------NL----GREKIVDLNYASELDPTLSFP-----------------YKYRAVAKMEEGQIRAAISEI 375 (591)
Q Consensus 328 r~~y-----------~~----~~eA~~dl~~Ai~LdP~~~~a-----------------y~~rg~~l~~l~~~~eAl~~~ 375 (591)
+|.. .. ..+|+..|+..++.-|+...+ -+..|..|.+.|++..|+.-+
T Consensus 85 ~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~ 164 (203)
T PF13525_consen 85 LGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRF 164 (203)
T ss_dssp HHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHH
T ss_pred HHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 4431 00 046777888888888887533 244677777888888888888
Q ss_pred HHHHhcCCCh----HHHHHHHHHHHHcCCHHHH
Q 007721 376 DRIIVFKLSV----DCLELRAWLFIAADDYESA 404 (591)
Q Consensus 376 ~~al~l~p~~----~~~~~r~~~~~~~g~~~~A 404 (591)
+.+|+--|+. +++...+..+.++|..+.|
T Consensus 165 ~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 165 QYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 8888877752 3445566677888877733
No 195
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.13 E-value=2.9e-05 Score=82.66 Aligned_cols=94 Identities=23% Similarity=0.165 Sum_probs=81.3
Q ss_pred hHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHHHHHHHHhhccc
Q 007721 462 SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIE 541 (591)
Q Consensus 462 al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l~ 541 (591)
|+..++++|...|.+++++.-++..|...++++.|+...++|.++.|++-+.++.++.++..+|++++|+...+ ++-+.
T Consensus 219 AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLN-s~Pm~ 297 (395)
T PF09295_consen 219 AIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALN-SCPML 297 (395)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHh-cCcCC
Confidence 46778888888888889999999999999999999999999999999999999999999999999999997666 66666
Q ss_pred ccHHHHHHHHHHhhh
Q 007721 542 RTFEAFFLKAYILAD 556 (591)
Q Consensus 542 ~~~~~~~~~~~~~~~ 556 (591)
|..+-+-+|-.+-.+
T Consensus 298 ~~~~k~~~~~~~p~~ 312 (395)
T PF09295_consen 298 TYKDKYKLKRPVPAK 312 (395)
T ss_pred CCccchhhhcCCCcc
Confidence 777766666655443
No 196
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.12 E-value=8.7e-05 Score=80.08 Aligned_cols=172 Identities=16% Similarity=0.117 Sum_probs=123.1
Q ss_pred HHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007721 335 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLAL 414 (591)
Q Consensus 335 ~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~~~~~~~r~~~~~~~g~~~~A~~d~~~al~l 414 (591)
++|...-++.+...|+.+.+....-.++.++++|++|+..+++=-.+.-.....+.++.++.+++..++|+.+++ .+
T Consensus 29 e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~---~~ 105 (652)
T KOG2376|consen 29 EEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTLK---GL 105 (652)
T ss_pred HHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHHh---cc
Confidence 899999999999999999999999999999999999994443332222222222578999999999999999999 45
Q ss_pred CCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccchHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHH
Q 007721 415 ESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQK 494 (591)
Q Consensus 415 ~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~ 494 (591)
+++. ..+..++..+.-.++++++| +.+|+.-+..+-.+-+.- .+.|...
T Consensus 106 ~~~~------~~ll~L~AQvlYrl~~ydea------------------ldiY~~L~kn~~dd~d~~-------~r~nl~a 154 (652)
T KOG2376|consen 106 DRLD------DKLLELRAQVLYRLERYDEA------------------LDIYQHLAKNNSDDQDEE-------RRANLLA 154 (652)
T ss_pred cccc------hHHHHHHHHHHHHHhhHHHH------------------HHHHHHHHhcCCchHHHH-------HHHHHHH
Confidence 5544 33566666555555566665 666666666665554433 2222222
Q ss_pred HHHHH---HHHHHhcCCc-hHHHHHhHHHHHHHcCCHHHHHHHHHHhhcc
Q 007721 495 AAMRC---LRLARNHSSS-EHERLVYEGWILYDTGHREEALSRAEKSISI 540 (591)
Q Consensus 495 eA~~~---~~~Al~l~p~-~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l 540 (591)
.+-+. .-+.....|. +.+-+||.+.++...|+|.+|++..++|+.+
T Consensus 155 ~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~ 204 (652)
T KOG2376|consen 155 VAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRI 204 (652)
T ss_pred HHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 22111 2344555555 7789999999999999999999999999665
No 197
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=1.1e-05 Score=78.18 Aligned_cols=81 Identities=15% Similarity=0.195 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007721 335 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLA 413 (591)
Q Consensus 335 ~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~-~~~~~~r~~~~~~~g~~~~A~~d~~~al~ 413 (591)
..|+..|.+||.++|+.+.+|.||+..++++++++....+.+||+++.|| ...++..|.+......|++||..+++|..
T Consensus 27 ~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~s 106 (284)
T KOG4642|consen 27 DDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYS 106 (284)
T ss_pred chHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999998 67788899999999999999999999966
Q ss_pred cC
Q 007721 414 LE 415 (591)
Q Consensus 414 l~ 415 (591)
+-
T Consensus 107 l~ 108 (284)
T KOG4642|consen 107 LL 108 (284)
T ss_pred HH
Confidence 54
No 198
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.08 E-value=8.9e-05 Score=67.14 Aligned_cols=68 Identities=15% Similarity=0.129 Sum_probs=59.9
Q ss_pred hHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcch
Q 007721 352 SFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS----VDCLELRAWLFIAADDYESALRDTLALLALESNYM 419 (591)
Q Consensus 352 ~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~----~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~ 419 (591)
+..++..|...++.|+|++|+..|+.+..--|- ..+-..++.++...|++++|+..+++-++|+|++.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp 81 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP 81 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence 467888999999999999999999999999883 23445588999999999999999999999999874
No 199
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.07 E-value=0.0002 Score=67.11 Aligned_cols=145 Identities=14% Similarity=0.060 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007721 335 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVF--KLSVDCLELRAWLFIAADDYESALRDTLALL 412 (591)
Q Consensus 335 ~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l--~p~~~~~~~r~~~~~~~g~~~~A~~d~~~al 412 (591)
+..+....+.++..|+.. -.+.+|+++.++|++.||...|..++.= .-++..+..++.+....+++.+|..-+++..
T Consensus 73 ~R~~Rea~~~~~~ApTvq-nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~ 151 (251)
T COG4700 73 ERHLREATEELAIAPTVQ-NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLM 151 (251)
T ss_pred hHHHHHHHHHHhhchhHH-HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHh
Confidence 445555566677777654 4567899999999999999999998841 1234555567788889999999999999988
Q ss_pred hcCCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccchHHHHHHHHHcCCCCchhHhhhHHHHHHhCC
Q 007721 413 ALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNC 492 (591)
Q Consensus 413 ~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~~P~~~~~~~~~g~~l~~l~~ 492 (591)
+-+|.. ..++.+...|.+|..+|+
T Consensus 152 e~~pa~--------------------------------------------------------r~pd~~Ll~aR~laa~g~ 175 (251)
T COG4700 152 EYNPAF--------------------------------------------------------RSPDGHLLFARTLAAQGK 175 (251)
T ss_pred hcCCcc--------------------------------------------------------CCCCchHHHHHHHHhcCC
Confidence 888865 123344445666777777
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHHHHHHHHh
Q 007721 493 QKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKS 537 (591)
Q Consensus 493 ~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~~e~a 537 (591)
++.|...++.|+..-|+ +++..+.|.-|..+|+.+||-+.|...
T Consensus 176 ~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 176 YADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred chhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 77777777777777776 445566666677777777766555443
No 200
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.07 E-value=0.0093 Score=65.42 Aligned_cols=279 Identities=13% Similarity=0.075 Sum_probs=174.3
Q ss_pred HHHHHHhhhHHhhhccHHHHHHHHHHHhhcc-----cc-----chhhhhHHHHHHhC-------------ChHHHHHHHH
Q 007721 256 MLALHQLGCVMFEREEYKDACYYFEAAADAG-----HI-----YSLAGLARAKYKVG-------------QQYSAYKLIN 312 (591)
Q Consensus 256 ~~a~~~lG~~~~~~g~~~eA~~~f~~Al~~~-----~~-----~a~~~la~~~~~~G-------------~~~~A~~~~~ 312 (591)
...+..|+.-|...|.++.|...|+.++..- .+ |+...-..+...++ +.+-.+..++
T Consensus 248 g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e 327 (835)
T KOG2047|consen 248 GFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFE 327 (835)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHH
Confidence 4467888999999999999999999988751 11 11111001111111 0011122222
Q ss_pred HHHHhcCCCHHHHHHHHhcCCcHHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhc-CCC-----h-
Q 007721 313 SIISEHKPTGWMYQERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVF-KLS-----V- 385 (591)
Q Consensus 313 ~aI~~~~~~g~a~~~r~~y~~~~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l-~p~-----~- 385 (591)
..+..+|- -.=+-+++-||++..-|.+|-.++ .|+..+-+..|..|+.- +|. +
T Consensus 328 ~lm~rr~~------------------~lNsVlLRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~vdP~ka~Gs~~ 387 (835)
T KOG2047|consen 328 SLMNRRPL------------------LLNSVLLRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVKTVDPKKAVGSPG 387 (835)
T ss_pred HHHhccch------------------HHHHHHHhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHHccCcccCCCChh
Confidence 22222220 011347888999999999996654 57888999999998864 663 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccc-hHH
Q 007721 386 DCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIG-SLA 464 (591)
Q Consensus 386 ~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~-al~ 464 (591)
..|...|-+|...|+.+.|..-|++|.+..=.... +.|..|.+-.+....-..++ |+.
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~---------------------dLa~vw~~waemElrh~~~~~Al~ 446 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVE---------------------DLAEVWCAWAEMELRHENFEAALK 446 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchH---------------------HHHHHHHHHHHHHHhhhhHHHHHH
Confidence 33555778999999999999999999988754421 01222222222222223333 455
Q ss_pred HHHHHHHcCCCCc-------------------hhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcC
Q 007721 465 VINQMLINDPGKS-------------------FLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTG 525 (591)
Q Consensus 465 ~~~~al~~~P~~~-------------------~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g 525 (591)
++++|... |.++ ..|-..+.+..-+|=++--...|++.+.|.=--+....|.|..|-...
T Consensus 447 lm~~A~~v-P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~ 525 (835)
T KOG2047|consen 447 LMRRATHV-PTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHK 525 (835)
T ss_pred HHHhhhcC-CCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhH
Confidence 66666554 3332 234455556666777777788888888888888888899999988888
Q ss_pred CHHHHHHHHHHhhcccc-c--HH---HHHHHHHHhhhcCCCCCchhHHHHHHHHHhc-CCCC
Q 007721 526 HREEALSRAEKSISIER-T--FE---AFFLKAYILADTNLDPESSTYVIQLLEEALR-CPSD 580 (591)
Q Consensus 526 ~~eeAl~~~e~ai~l~~-~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 580 (591)
-|+++.+.|||-|+|=+ . |+ .|.-|... -=++.-+ ...-.|.|.||+ ||.+
T Consensus 526 yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~-rygg~kl---EraRdLFEqaL~~Cpp~ 583 (835)
T KOG2047|consen 526 YFEESFKAYERGISLFKWPNVYDIWNTYLTKFIK-RYGGTKL---ERARDLFEQALDGCPPE 583 (835)
T ss_pred HHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHH-HhcCCCH---HHHHHHHHHHHhcCCHH
Confidence 89999999999998833 2 12 45555554 2223333 345577888885 7754
No 201
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.05 E-value=3.1e-05 Score=79.66 Aligned_cols=157 Identities=13% Similarity=0.031 Sum_probs=118.2
Q ss_pred HHHhhhHHhhhccHHHHHHHHHHHhhccccchhhhhHHHHHHhCChHHHHHHHHHHHHhcCC-----CHHHH--HHHHhc
Q 007721 259 LHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKP-----TGWMY--QERSLY 331 (591)
Q Consensus 259 ~~~lG~~~~~~g~~~eA~~~f~~Al~~~~~~a~~~la~~~~~~G~~~~A~~~~~~aI~~~~~-----~g~a~--~~r~~y 331 (591)
....|.++...|++++|++...+. +......-.-.++...|+.+.|.+.+..+-....+ ++.+| ...|.
T Consensus 105 ~~~~A~i~~~~~~~~~AL~~l~~~---~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~- 180 (290)
T PF04733_consen 105 QLLAATILFHEGDYEEALKLLHKG---GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGG- 180 (290)
T ss_dssp HHHHHHHHCCCCHHHHHHCCCTTT---TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHcCCHHHHHHHHHcc---CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCc-
Confidence 345677888899999998765542 23333344455788999999999999888766654 33333 33332
Q ss_pred CCcHHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCCH-HHHHHHHH
Q 007721 332 NLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDY-ESALRDTL 409 (591)
Q Consensus 332 ~~~~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~-~~~~~~r~~~~~~~g~~-~~A~~d~~ 409 (591)
....+|.-.|+....-.|..+..++..|.+.+.+|+++||...+..|++.+|+ ++.+.|+..+...+|+. +.+.+.+.
T Consensus 181 e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp TCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 12289999999988887888999999999999999999999999999999996 88899999999999999 66778888
Q ss_pred HHHhcCCcch
Q 007721 410 ALLALESNYM 419 (591)
Q Consensus 410 ~al~l~P~~~ 419 (591)
+.-..+|+++
T Consensus 261 qL~~~~p~h~ 270 (290)
T PF04733_consen 261 QLKQSNPNHP 270 (290)
T ss_dssp HCHHHTTTSH
T ss_pred HHHHhCCCCh
Confidence 8888999884
No 202
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.04 E-value=1.5e-05 Score=62.81 Aligned_cols=56 Identities=16% Similarity=0.223 Sum_probs=31.8
Q ss_pred HHhCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc
Q 007721 363 MEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNY 418 (591)
Q Consensus 363 ~~l~~~~eAl~~~~~al~l~p~-~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~ 418 (591)
++.|++++|+..|+++++.+|+ .+....++.++...|++++|...+++++..+|++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 4455566666666666666663 4445555556666666666666666666666654
No 203
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.00 E-value=6e-06 Score=56.05 Aligned_cols=33 Identities=27% Similarity=0.342 Sum_probs=30.6
Q ss_pred HHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHH
Q 007721 341 LNYASELDPTLSFPYKYRAVAKMEEGQIRAAIS 373 (591)
Q Consensus 341 l~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~ 373 (591)
|++||+++|+++.+|+++|.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 689999999999999999999999999999863
No 204
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=7.4e-05 Score=72.45 Aligned_cols=111 Identities=17% Similarity=0.121 Sum_probs=91.6
Q ss_pred hHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHHHHHHHHhhcc-
Q 007721 462 SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISI- 540 (591)
Q Consensus 462 al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l- 540 (591)
|+.+|-+||-++|..+.+|.|++++++++++++-...+.++|+++.|+.+-+++.+|.++.....|++|+....||.++
T Consensus 29 ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~ 108 (284)
T KOG4642|consen 29 AIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLL 108 (284)
T ss_pred HHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence 5889999999999999999999999999999999999999999999999999999999999999999999999999775
Q ss_pred ---cccHHHHHHHHHHhhhcCC-CCCchhHHHHHHH
Q 007721 541 ---ERTFEAFFLKAYILADTNL-DPESSTYVIQLLE 572 (591)
Q Consensus 541 ---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 572 (591)
.++|+-=|-++.-.|---= ..+++..+.|.+|
T Consensus 109 r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~E 144 (284)
T KOG4642|consen 109 REQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQELE 144 (284)
T ss_pred hcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHhh
Confidence 3445544445554444332 3334444455554
No 205
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.94 E-value=0.0004 Score=69.39 Aligned_cols=177 Identities=17% Similarity=0.076 Sum_probs=136.0
Q ss_pred HHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCChHHH-HHHHHHHHHcCCHHHHHHHHHHHHh
Q 007721 335 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCL-ELRAWLFIAADDYESALRDTLALLA 413 (591)
Q Consensus 335 ~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~~~~~-~~r~~~~~~~g~~~~A~~d~~~al~ 413 (591)
.+++..+..-.+-+|..-....-+|.+|...+++.+|-.+|...-.+.|...-+ ...+..+...+.+.+|++-......
T Consensus 27 ~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D 106 (459)
T KOG4340|consen 27 ADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLD 106 (459)
T ss_pred HHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcC
Confidence 788888888889999998999999999999999999999999999999975444 3366778888999999887655433
Q ss_pred cCCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccchHHHHHHHHHcCC--CCchhHhhhHHHHHHhC
Q 007721 414 LESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDP--GKSFLRFRQSLLLLRLN 491 (591)
Q Consensus 414 l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~~P--~~~~~~~~~g~~l~~l~ 491 (591)
- |+- +....++... -.+++-|..++-+.++| -| +.++..++.|-++.+-|
T Consensus 107 ~-~~L-----~~~~lqLqaA------------------IkYse~Dl~g~rsLveQ----lp~en~Ad~~in~gCllykeg 158 (459)
T KOG4340|consen 107 N-PAL-----HSRVLQLQAA------------------IKYSEGDLPGSRSLVEQ----LPSENEADGQINLGCLLYKEG 158 (459)
T ss_pred C-HHH-----HHHHHHHHHH------------------HhcccccCcchHHHHHh----ccCCCccchhccchheeeccc
Confidence 2 221 1122222221 12233343444444444 35 67888999999999999
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHHHHHHHHhhc
Q 007721 492 CQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSIS 539 (591)
Q Consensus 492 ~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~ 539 (591)
.+|+|+.-++.|++...-++-.-++.+++.|..|+++.|+..-.+.|.
T Consensus 159 qyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIie 206 (459)
T KOG4340|consen 159 QYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIE 206 (459)
T ss_pred cHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999987665554
No 206
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.92 E-value=0.001 Score=62.46 Aligned_cols=163 Identities=13% Similarity=0.036 Sum_probs=122.1
Q ss_pred ChHHHHHHHHHHHHhcC------CCHHHHHHHHhcCCcHHHHHHHHHHHH-cCCCChHHHHhHHHHHHHhCCHHHHHHHH
Q 007721 303 QQYSAYKLINSIISEHK------PTGWMYQERSLYNLGREKIVDLNYASE-LDPTLSFPYKYRAVAKMEEGQIRAAISEI 375 (591)
Q Consensus 303 ~~~~A~~~~~~aI~~~~------~~g~a~~~r~~y~~~~eA~~dl~~Ai~-LdP~~~~ay~~rg~~l~~l~~~~eAl~~~ 375 (591)
+++..+....+.+..-| .++.+..+.|.+ .||...|.+++. +-.+++.....++.+....+++.+|...+
T Consensus 71 dP~R~~Rea~~~~~~ApTvqnr~rLa~al~elGr~---~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tL 147 (251)
T COG4700 71 DPERHLREATEELAIAPTVQNRYRLANALAELGRY---HEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTL 147 (251)
T ss_pred ChhHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhh---hhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 44444444444444444 356777777666 999999998764 66777888899999999999999999999
Q ss_pred HHHHhcCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhh
Q 007721 376 DRIIVFKLS---VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYD 452 (591)
Q Consensus 376 ~~al~l~p~---~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~ 452 (591)
++..+.+|. |+.....+.++..+|++++|...|+.++.-.|+.
T Consensus 148 e~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~---------------------------------- 193 (251)
T COG4700 148 EDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGP---------------------------------- 193 (251)
T ss_pred HHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCH----------------------------------
Confidence 999999995 6666777889999999999999999999999975
Q ss_pred ccccccccchHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHH----HHHhcCCchHHHHHhHHHHHHHcCCHH
Q 007721 453 RWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLR----LARNHSSSEHERLVYEGWILYDTGHRE 528 (591)
Q Consensus 453 ~~~~~~~~~al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~----~Al~l~p~~~~a~~~~G~~l~~~g~~e 528 (591)
.+....+.-|.++||..||-.-|. ++.+-.|. ..-.++||+-...|+..
T Consensus 194 -------------------------~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r~~~H--~rkh~reW~~~A~~~~~ 246 (251)
T COG4700 194 -------------------------QARIYYAEMLAKQGRLREANAQYVAVVDTAKRSRPH--YRKHHREWIKTANERLK 246 (251)
T ss_pred -------------------------HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcchh--HHHHHHHHHHHHHHHHH
Confidence 123345667788888887766554 44444444 44678899877766544
Q ss_pred H
Q 007721 529 E 529 (591)
Q Consensus 529 e 529 (591)
+
T Consensus 247 q 247 (251)
T COG4700 247 Q 247 (251)
T ss_pred h
Confidence 3
No 207
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=97.92 E-value=1.4e-05 Score=67.84 Aligned_cols=88 Identities=17% Similarity=0.144 Sum_probs=69.4
Q ss_pred eEEEEcCeEEEhhHHHHh-hcCHHHHHhhcCC---CCCCCCceeEecCCCCCHHHHHHHHHHHhc-CCCCCCChhHHHHH
Q 007721 57 VTFCVRDKEISFVRNKIA-SLSSPFKAMLYGG---FVESKRKTIDFSHDGVSVEGLRAVEVYTRT-SRVDLFCPGIVLEL 131 (591)
Q Consensus 57 V~f~v~g~~~~aHr~iLa-a~S~yF~amf~~~---~~Es~~~~I~l~~~~vs~~~~~~ll~ylYt-g~~~~~~~~~v~~l 131 (591)
|+|.|||+.|..-+..|. ....+|..|+.+. ......+.+-| +-+|..|+.||+|+.+ +.+...+...+..+
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi---DRdp~~F~~IL~ylr~~~~l~~~~~~~~~~l 77 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI---DRDPELFEYILNYLRTGGKLPIPDEICLEEL 77 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE---SS-HHHHHHHHHHHHHTSSB---TTS-HHHH
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe---ccChhhhhHHHHHHhhcCccCCCCchhHHHH
Confidence 789999999999999998 5567899999875 44455678888 6799999999999999 66663336678899
Q ss_pred HHHHhhhChHHH-HHHH
Q 007721 132 LSFANRFCCEEM-KSAC 147 (591)
Q Consensus 132 L~~A~~~~i~~L-~~~C 147 (591)
+.-|.+|+++.| .+.|
T Consensus 78 ~~Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 78 LEEAEFYGLDELFIEDC 94 (94)
T ss_dssp HHHHHHHT-HHHHBHHC
T ss_pred HHHHHHcCCCccccCCC
Confidence 999999999999 6666
No 208
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.90 E-value=0.00023 Score=75.88 Aligned_cols=116 Identities=20% Similarity=0.129 Sum_probs=88.9
Q ss_pred hhccHHHHHHHHHHHhhccccchhhhhHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHhcCCcHHHHHHHHHHHHc
Q 007721 268 EREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKIVDLNYASEL 347 (591)
Q Consensus 268 ~~g~~~eA~~~f~~Al~~~~~~a~~~la~~~~~~G~~~~A~~~~~~aI~~~~~~g~a~~~r~~y~~~~eA~~dl~~Ai~L 347 (591)
..+++++|+..|++..+..|. ....+++++...++- .+|+..+++++..
T Consensus 181 ~t~~~~~ai~lle~L~~~~pe-v~~~LA~v~l~~~~E------------------------------~~AI~ll~~aL~~ 229 (395)
T PF09295_consen 181 LTQRYDEAIELLEKLRERDPE-VAVLLARVYLLMNEE------------------------------VEAIRLLNEALKE 229 (395)
T ss_pred hcccHHHHHHHHHHHHhcCCc-HHHHHHHHHHhcCcH------------------------------HHHHHHHHHHHHh
Confidence 346677777777765555432 334455655544433 5667777788888
Q ss_pred CCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007721 348 DPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLAL 414 (591)
Q Consensus 348 dP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~-~~~~~~r~~~~~~~g~~~~A~~d~~~al~l 414 (591)
+|.++..+.--+..++..++++.|+...++|+.+.|+ ...|+.++.+|..+||+++|+...+.+--.
T Consensus 230 ~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 230 NPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 8888888888899999999999999999999999996 789999999999999999999877755444
No 209
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.87 E-value=0.05 Score=58.00 Aligned_cols=278 Identities=10% Similarity=-0.023 Sum_probs=148.9
Q ss_pred hHHHHHHHHhhcchhhhHHHHHHHHhhhHHhhhccHHHHHHHHHHHhhc-cc--cch--hhhhHHHHHHhCChHHHHHHH
Q 007721 237 TTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADA-GH--IYS--LAGLARAKYKVGQQYSAYKLI 311 (591)
Q Consensus 237 ~~v~lLe~~~~~~~~~~~~~~a~~~lG~~~~~~g~~~eA~~~f~~Al~~-~~--~~a--~~~la~~~~~~G~~~~A~~~~ 311 (591)
.+..+.++.+-++|+ ...+...+.--..+|...-|...|++|++. +. ... ....|..-..+..++.|...|
T Consensus 192 raR~IYerfV~~HP~----v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iy 267 (677)
T KOG1915|consen 192 RARSIYERFVLVHPK----VSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIY 267 (677)
T ss_pred HHHHHHHHHheeccc----HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556665555543 223333344444566667777778877765 22 111 122233333344455565566
Q ss_pred HHHHHhcCCC-HHHHHHH-----HhcCCc---HHH-----HHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHH
Q 007721 312 NSIISEHKPT-GWMYQER-----SLYNLG---REK-----IVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDR 377 (591)
Q Consensus 312 ~~aI~~~~~~-g~a~~~r-----~~y~~~---~eA-----~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~ 377 (591)
.-+|..-|.. +.-++.. ..||.. +++ ...|++-++-||.+.++|+..--..-..|+.+.-.+.|.|
T Consensus 268 kyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yEr 347 (677)
T KOG1915|consen 268 KYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYER 347 (677)
T ss_pred HHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 6666666643 1111111 223322 333 3468999999999999999988888888999999999999
Q ss_pred HHhcCCC-hHHHHH-H-------HH--HHHHcCCHHHHHHHHHHHHhcCCcchhhhhhchHhHHHHHHHhhhcccCchhh
Q 007721 378 IIVFKLS-VDCLEL-R-------AW--LFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADC 446 (591)
Q Consensus 378 al~l~p~-~~~~~~-r-------~~--~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~ 446 (591)
||.--|- .+.-+- | .. .-+..+|.+.+..-|+.+|.|=|.-..-+...=.+.. ...-...+.+.
T Consensus 348 AIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA--~feIRq~~l~~--- 422 (677)
T KOG1915|consen 348 AIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYA--QFEIRQLNLTG--- 422 (677)
T ss_pred HHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHH--HHHHHHcccHH---
Confidence 9976663 222111 1 11 2456789999999999999999975322211111110 00001111111
Q ss_pred hhhhhhccccccccchHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCC
Q 007721 447 WIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGH 526 (591)
Q Consensus 447 ~~~l~~~~~~~~~~~al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~ 526 (591)
|-..+-.||..+|.+-.+. .-=.+-++++.++.-...|.+=|+-.|.+..+....|-.--.+|+
T Consensus 423 ---------------ARkiLG~AIG~cPK~KlFk-~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~Lgd 486 (677)
T KOG1915|consen 423 ---------------ARKILGNAIGKCPKDKLFK-GYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGD 486 (677)
T ss_pred ---------------HHHHHHHHhccCCchhHHH-HHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhh
Confidence 2334444455555433221 111223344455555555555555555555555555555555555
Q ss_pred HHHHHHHHHHhhc
Q 007721 527 REEALSRAEKSIS 539 (591)
Q Consensus 527 ~eeAl~~~e~ai~ 539 (591)
.|.|-+.|+=||+
T Consensus 487 tdRaRaifelAi~ 499 (677)
T KOG1915|consen 487 TDRARAIFELAIS 499 (677)
T ss_pred HHHHHHHHHHHhc
Confidence 5555555554444
No 210
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=97.87 E-value=0.0001 Score=72.01 Aligned_cols=97 Identities=21% Similarity=0.253 Sum_probs=84.1
Q ss_pred eEEEEcCeEEEhhHHHHhhcCHHHHHhhcCCCC-CC-CCceeEecCCCCCHHHHHHHHHHHhcCCCCC-CChhHHHHHHH
Q 007721 57 VTFCVRDKEISFVRNKIASLSSPFKAMLYGGFV-ES-KRKTIDFSHDGVSVEGLRAVEVYTRTSRVDL-FCPGIVLELLS 133 (591)
Q Consensus 57 V~f~v~g~~~~aHr~iLaa~S~yF~amf~~~~~-Es-~~~~I~l~~~~vs~~~~~~ll~ylYtg~~~~-~~~~~v~~lL~ 133 (591)
|.+-|||..|..+|.-|.-..-+|++|+.+++. +. ..+.|-| +=||.-|..+|+|+.-|.+.. -+...+.||+.
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFI---DRSpKHF~~ILNfmRdGdv~LPe~~kel~El~~ 83 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFI---DRSPKHFDTILNFMRDGDVDLPESEKELKELLR 83 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEe---cCChhHHHHHHHhhhcccccCccchHHHHHHHH
Confidence 889999999999999999999999999999873 32 3356888 779999999999999887772 34567889999
Q ss_pred HHhhhChHHHHHHHHHHHHhhcC
Q 007721 134 FANRFCCEEMKSACDAHLASLVG 156 (591)
Q Consensus 134 ~A~~~~i~~L~~~C~~~L~~~i~ 156 (591)
=|.+|.+++|.+.|..-+...+.
T Consensus 84 EA~fYlL~~Lv~~C~~~i~~~~~ 106 (230)
T KOG2716|consen 84 EAEFYLLDGLVELCQSAIARLIR 106 (230)
T ss_pred HHHHhhHHHHHHHHHHHhhhccc
Confidence 99999999999999998887755
No 211
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.86 E-value=2.1e-05 Score=53.06 Aligned_cols=34 Identities=21% Similarity=0.284 Sum_probs=22.5
Q ss_pred HHHHHhHHHHHHHcCCHHHHHHHHHHhhcccccH
Q 007721 511 HERLVYEGWILYDTGHREEALSRAEKSISIERTF 544 (591)
Q Consensus 511 ~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l~~~~ 544 (591)
+++++++|.+++.+|++++|+..|++|++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 3566677777777777777777777777777664
No 212
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=97.84 E-value=1.2e-05 Score=78.57 Aligned_cols=110 Identities=22% Similarity=0.208 Sum_probs=66.5
Q ss_pred EEEhhHHHHhhcCHHHHHhhcCCCCCC---------CCceeEecCCCCCHHHHHHHHHHHhcCCCCC-C---ChhHHHHH
Q 007721 65 EISFVRNKIASLSSPFKAMLYGGFVES---------KRKTIDFSHDGVSVEGLRAVEVYTRTSRVDL-F---CPGIVLEL 131 (591)
Q Consensus 65 ~~~aHr~iLaa~S~yF~amf~~~~~Es---------~~~~I~l~~~~vs~~~~~~ll~ylYtg~~~~-~---~~~~v~~l 131 (591)
+|.||+.|.++||++||.++....+|. ....|.+++--++..---.++.++||+.++. + +.+.|-.|
T Consensus 262 eikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~PkRIifdE~I~PkafA~i~lhclYTD~lDlSl~hkce~SigSL 341 (401)
T KOG2838|consen 262 EIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRPKRIIFDELIFPKAFAPIFLHCLYTDRLDLSLAHKCEDSIGSL 341 (401)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCCceeechhhhcchhhhhhhhhhheecccchhhcccCCcccccH
Confidence 799999999999999999997654443 2347777543344444456899999998872 0 11111111
Q ss_pred HHHHhhhChHHHHHHHHHHHHh-----hcCCHHhHHHHHHHHHHhChHHHHHHHHHHHHhhhH
Q 007721 132 LSFANRFCCEEMKSACDAHLAS-----LVGDIEDALILIDYGLEERATLLVASCLQVLLRELP 189 (591)
Q Consensus 132 L~~A~~~~i~~L~~~C~~~L~~-----~i~~~~n~~~ll~~A~~~~~~~L~~~c~~~i~~n~~ 189 (591)
-++ +-+.. .+. ...+++++++|..+....|...|..+|..+..
T Consensus 342 Sea--------------kAitnaGkpn~~q-aaeAleL~~IAlFfEfemLaQa~e~Vir~aca 389 (401)
T KOG2838|consen 342 SEA--------------KAITNAGKPNDLQ-AAEALELIEIALFFEFEMLAQACEDVIRKACA 389 (401)
T ss_pred HHH--------------HHHHcCCCCchhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 100 00110 011 34566667777666666677777766666543
No 213
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=0.00027 Score=68.86 Aligned_cols=115 Identities=17% Similarity=0.143 Sum_probs=68.0
Q ss_pred HHHHHhhhHHhhhccHHHHHHHHHHHhhccccchhhhhHHHH--HHhCChHHHHHHHHHH-HHhcCCCHHHHHHHHhcCC
Q 007721 257 LALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAK--YKVGQQYSAYKLINSI-ISEHKPTGWMYQERSLYNL 333 (591)
Q Consensus 257 ~a~~~lG~~~~~~g~~~eA~~~f~~Al~~~~~~a~~~la~~~--~~~G~~~~A~~~~~~a-I~~~~~~g~a~~~r~~y~~ 333 (591)
.++++.|+-.+..|+|.||...|+.||..- -.+. -+-|.. -+-.+.+. +.+.-|....+..-+.|
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l--------~~L~lkEkP~e~--eW~eLdk~~tpLllNy~QC~L~~~e~-- 246 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICL--------RNLQLKEKPGEP--EWLELDKMITPLLLNYCQCLLKKEEY-- 246 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHH--------HHHHhccCCCCh--HHHHHHHhhhHHHHhHHHHHhhHHHH--
Confidence 357889999999999999999998877641 0111 111221 12222222 22233444444444444
Q ss_pred cHHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 007721 334 GREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS 384 (591)
Q Consensus 334 ~~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~ 384 (591)
.++++..+.++..+|++..||+.||-+...-=+.+||-+||.++|+++|.
T Consensus 247 -yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 247 -YEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred -HHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 56666666666666666666666666666666666666666666666665
No 214
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.78 E-value=0.00041 Score=69.11 Aligned_cols=108 Identities=17% Similarity=0.036 Sum_probs=96.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccchHHHHH
Q 007721 388 LELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVIN 467 (591)
Q Consensus 388 ~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~ 467 (591)
+|+.+.-+...|||.+|..-|+.=+.--|+.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s------------------------------------------------- 174 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNS------------------------------------------------- 174 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-------------------------------------------------
Confidence 6777888899999999999999999999975
Q ss_pred HHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCch---HHHHHhHHHHHHHcCCHHHHHHHHHHhhcccccH
Q 007721 468 QMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE---HERLVYEGWILYDTGHREEALSRAEKSISIERTF 544 (591)
Q Consensus 468 ~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~---~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l~~~~ 544 (591)
+--+.++|.+|.++..+|++++|...|..+.+-.|++ +|+++.+|.++.++|+-|+|-..|++.|+-=|..
T Consensus 175 ------~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 175 ------TYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred ------cccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 3346789999999999999999999999999988775 7999999999999999999999999999999988
Q ss_pred HHHHHH
Q 007721 545 EAFFLK 550 (591)
Q Consensus 545 ~~~~~~ 550 (591)
++=-++
T Consensus 249 ~aA~~A 254 (262)
T COG1729 249 DAAKLA 254 (262)
T ss_pred HHHHHH
Confidence 754433
No 215
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.76 E-value=0.0004 Score=69.19 Aligned_cols=105 Identities=14% Similarity=0.031 Sum_probs=96.4
Q ss_pred HHhHHHHHHHhCCHHHHHHHHHHHHhcCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhhchHhHH
Q 007721 355 YKYRAVAKMEEGQIRAAISEIDRIIVFKLS----VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHL 430 (591)
Q Consensus 355 y~~rg~~l~~l~~~~eAl~~~~~al~l~p~----~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~~~~~~ 430 (591)
.++-|.-+...|+|.+|...|..=|.--|+ +.++|.+|.++..+|+|++|...|.++.+-.|+.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s------------ 211 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKS------------ 211 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCC------------
Confidence 778888899999999999999999999995 5778899999999999999999999999999975
Q ss_pred HHHHHhhhcccCchhhhhhhhhccccccccchHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCch
Q 007721 431 VKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE 510 (591)
Q Consensus 431 ~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~ 510 (591)
|+-+++.+-+|.++.++|..++|-+.+++.+.--|+.
T Consensus 212 -------------------------------------------~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 212 -------------------------------------------PKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred -------------------------------------------CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 7789999999999999999999999999999999997
Q ss_pred HHHH
Q 007721 511 HERL 514 (591)
Q Consensus 511 ~~a~ 514 (591)
.-|.
T Consensus 249 ~aA~ 252 (262)
T COG1729 249 DAAK 252 (262)
T ss_pred HHHH
Confidence 6554
No 216
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.74 E-value=0.0005 Score=62.33 Aligned_cols=106 Identities=12% Similarity=0.026 Sum_probs=89.6
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccchHH
Q 007721 385 VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLA 464 (591)
Q Consensus 385 ~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~ 464 (591)
+..++..|.-.++.|+|++|+.-|+.+.+.-|-.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g---------------------------------------------- 43 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFG---------------------------------------------- 43 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC----------------------------------------------
Confidence 5678889999999999999999999999999953
Q ss_pred HHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCch---HHHHHhHHHHHHHcCC---------------
Q 007721 465 VINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE---HERLVYEGWILYDTGH--------------- 526 (591)
Q Consensus 465 ~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~---~~a~~~~G~~l~~~g~--------------- 526 (591)
|-...+...+|.++.+.|++++|+..+++=++++|++ ..|++-+|++.+.++.
T Consensus 44 ---------~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~ 114 (142)
T PF13512_consen 44 ---------EYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTP 114 (142)
T ss_pred ---------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHH
Confidence 2223345568889999999999999999999999987 5688999999999887
Q ss_pred HHHHHHHHHHhhcccccHH
Q 007721 527 REEALSRAEKSISIERTFE 545 (591)
Q Consensus 527 ~eeAl~~~e~ai~l~~~~~ 545 (591)
..+|+..+++-|+.=|+.+
T Consensus 115 ~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 115 ARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHHHHHHHHHCcCCh
Confidence 8888989988888888765
No 217
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.74 E-value=5e-05 Score=54.70 Aligned_cols=43 Identities=19% Similarity=0.017 Sum_probs=39.3
Q ss_pred chhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHH
Q 007721 477 SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGW 519 (591)
Q Consensus 477 ~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~ 519 (591)
|++++.+|.++..+|++++|++.|+++++.+|++++++..+|.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 4678999999999999999999999999999999999988874
No 218
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.74 E-value=0.0047 Score=63.27 Aligned_cols=257 Identities=15% Similarity=0.108 Sum_probs=157.3
Q ss_pred hccHHHHHHHHHHHhhccc---cchhhhhHHHHHHhCChHHHHHHHHHHHHhcCCCH-------HHHHHHHhcCCcHHHH
Q 007721 269 REEYKDACYYFEAAADAGH---IYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTG-------WMYQERSLYNLGREKI 338 (591)
Q Consensus 269 ~g~~~eA~~~f~~Al~~~~---~~a~~~la~~~~~~G~~~~A~~~~~~aI~~~~~~g-------~a~~~r~~y~~~~eA~ 338 (591)
..+|..|+...+-+...+. ......+|.+++.+|++++|...|.-+.......+ ..+.-.|.| .+|.
T Consensus 35 ~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y---~eA~ 111 (557)
T KOG3785|consen 35 NRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQY---IEAK 111 (557)
T ss_pred cccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHH---HHHH
Confidence 4456666665554444421 12344678889999999999999888876544333 333333444 5553
Q ss_pred HHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc
Q 007721 339 VDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESNY 418 (591)
Q Consensus 339 ~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~ 418 (591)
. +-+-.|+.+.--.-+-.+-.++|+-+ -+..|..-++- ..+.-..++-++...-.|.+|+.-|.+++.-+|+|
T Consensus 112 ~----~~~ka~k~pL~~RLlfhlahklndEk-~~~~fh~~LqD--~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey 184 (557)
T KOG3785|consen 112 S----IAEKAPKTPLCIRLLFHLAHKLNDEK-RILTFHSSLQD--TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEY 184 (557)
T ss_pred H----HHhhCCCChHHHHHHHHHHHHhCcHH-HHHHHHHHHhh--hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhh
Confidence 3 33344555544333444444555433 23333333321 11222334556666667999999999999999998
Q ss_pred hhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccc-hHHHHHHHHHcCCCCchhHhhhHHHHHHh--CCHHH
Q 007721 419 MMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIG-SLAVINQMLINDPGKSFLRFRQSLLLLRL--NCQKA 495 (591)
Q Consensus 419 ~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~-al~~~~~al~~~P~~~~~~~~~g~~l~~l--~~~~e 495 (591)
......+ |.|+.+ .|-++ |-.++.-=|..-|+++.+.+.++-.+.|+ ||..+
T Consensus 185 ~alNVy~------------------ALCyyK-------lDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae 239 (557)
T KOG3785|consen 185 IALNVYM------------------ALCYYK-------LDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAE 239 (557)
T ss_pred hhhHHHH------------------HHHHHh-------cchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhH
Confidence 5322222 222111 12233 35577777888999999999988888873 33222
Q ss_pred HH----------------HHH----------HHHHhcCCc----hHHHHHhHHHHHHHcCCHHHHHHHHHHhhcccccHH
Q 007721 496 AM----------------RCL----------RLARNHSSS----EHERLVYEGWILYDTGHREEALSRAEKSISIERTFE 545 (591)
Q Consensus 496 A~----------------~~~----------~~Al~l~p~----~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l~~~~~ 545 (591)
+. ... +-|++.-|. -+||..|+...++.+|+.+||+..-. .++|...
T Consensus 240 ~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~K---dl~PttP 316 (557)
T KOG3785|consen 240 DEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCK---DLDPTTP 316 (557)
T ss_pred HHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHh---hcCCCCh
Confidence 21 111 123333333 37899999999999999999997654 5899998
Q ss_pred -HHHHHHHHhhhcCCCCCc
Q 007721 546 -AFFLKAYILADTNLDPES 563 (591)
Q Consensus 546 -~~~~~~~~~~~~~~~~~~ 563 (591)
.|.+||.+.+--+....|
T Consensus 317 ~EyilKgvv~aalGQe~gS 335 (557)
T KOG3785|consen 317 YEYILKGVVFAALGQETGS 335 (557)
T ss_pred HHHHHHHHHHHHhhhhcCc
Confidence 999999998876655443
No 219
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=97.74 E-value=6.6e-05 Score=63.81 Aligned_cols=87 Identities=14% Similarity=0.106 Sum_probs=63.3
Q ss_pred HHHHHHHHHHhChHHHHHHHHHHHHhhhHhhhCCccccccccCchhhhhHh----hhcchhHHHHHHHHHhhhhccccch
Q 007721 161 ALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVMKIFCSSEATERLA----NVGHASFLLYYFLSQVAMEKDRVSN 236 (591)
Q Consensus 161 ~~~ll~~A~~~~~~~L~~~c~~~i~~n~~~v~~~~~f~~l~~~~~~~~~~~----~~~~~~~~~~a~Ls~v~~d~~~r~~ 236 (591)
|+.++.+|..|+++.|.+.|.+||..||..+.++++|.++-. ......+. .+..+..++.+++.|+.++...+.
T Consensus 1 c~~i~~~a~~~~~~~L~~~~~~~i~~nf~~~~~~~~f~~L~~-~~l~~iL~~d~l~v~~E~~v~~av~~W~~~~~~~~~- 78 (101)
T smart00875 1 CLGIRRFAELYGLEELLEKALRFILKNFLEVAQSEEFLELSL-EQLLSLLSSDDLNVPSEEEVFEAVLRWVKHDPERRR- 78 (101)
T ss_pred CHhHHHHHHHhChHHHHHHHHHHHHHHHHHHhcCcHHhcCCH-HHHHHHhCcccCCCCCHHHHHHHHHHHHHCCHHHHH-
Confidence 578999999999999999999999999999999999987621 11111110 234577889999999999865433
Q ss_pred hHHHHHHHHhhcch
Q 007721 237 TTVMLLERLGECST 250 (591)
Q Consensus 237 ~~v~lLe~~~~~~~ 250 (591)
....+++. +|++.
T Consensus 79 ~~~~ll~~-ir~~~ 91 (101)
T smart00875 79 HLPELLSH-VRFPL 91 (101)
T ss_pred HHHHHHHh-CCCCC
Confidence 55555554 45543
No 220
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.72 E-value=1.7e-05 Score=82.04 Aligned_cols=127 Identities=15% Similarity=0.034 Sum_probs=110.5
Q ss_pred CeEEEhhHHHHhhcCHHHHHhhcCCCCCCCCceeEecCCCCCHHHHHHHHHHHhcCCCCCCChhHHH---HHHHHHhhhC
Q 007721 63 DKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIVL---ELLSFANRFC 139 (591)
Q Consensus 63 g~~~~aHr~iLaa~S~yF~amf~~~~~Es~~~~I~l~~~~vs~~~~~~ll~ylYtg~~~~~~~~~v~---~lL~~A~~~~ 139 (591)
++.+.+|+.+++++|+.|++|+.....+...+.+++ .+.+++.++.+..|.|+..-. ...+.+. .++..+.++.
T Consensus 109 ~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~--~d~~~~~~~~~~~F~~~~s~~-~~~~~~~~~~~~~a~~f~~~ 185 (297)
T KOG1987|consen 109 NGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITL--LEEKPEVLEALNGFQVLPSQV-SSVERIFEKHPDLAAAFKYK 185 (297)
T ss_pred CcEEEcCceEEEeeecceeeecccccchhccccccc--cccchhhHhhhceEEEeccch-HHHHHhhcCChhhhhccccc
Confidence 567999999999999999999999887777777788 889999999999999996555 3444454 8889999999
Q ss_pred hHHHHHHHHHHHHhhcCCHHhHHHHHHHHHHhChHHHHHHHHHHHHh--hhHhhhC
Q 007721 140 CEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLR--ELPSSLY 193 (591)
Q Consensus 140 i~~L~~~C~~~L~~~i~~~~n~~~ll~~A~~~~~~~L~~~c~~~i~~--n~~~v~~ 193 (591)
...|+..|...+.+.+. ..++...+..+..+....+...|..++.. ++..+.+
T Consensus 186 ~~~lk~~~~~~l~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld~l~~ 240 (297)
T KOG1987|consen 186 NRHLKLACMPVLLSLIE-TLNVSQSLQEASNYDLKEAKSALTYVIAAGFKLDWLEK 240 (297)
T ss_pred cHHHHHHHHHHHHHHHH-hhhhcccHHHhchhHHHHHHHHHHHHHhccchHhHHHH
Confidence 99999999999999999 78999999999999999999999999887 6655554
No 221
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.70 E-value=6.5e-05 Score=50.64 Aligned_cols=32 Identities=16% Similarity=0.140 Sum_probs=17.2
Q ss_pred HHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 007721 353 FPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS 384 (591)
Q Consensus 353 ~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~ 384 (591)
.+|+++|.++..+|++++|+..|++||+++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 34555555555555555555555555555553
No 222
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.69 E-value=0.11 Score=57.40 Aligned_cols=416 Identities=12% Similarity=0.045 Sum_probs=241.9
Q ss_pred CChhHHHHHHHHHhhhChHHHHHHHHHHHHhhcCCHHhHHHHHHHHHHhChHH-HHHHHHHHHHhhhHhhhCCccccccc
Q 007721 123 FCPGIVLELLSFANRFCCEEMKSACDAHLASLVGDIEDALILIDYGLEERATL-LVASCLQVLLRELPSSLYNPKVMKIF 201 (591)
Q Consensus 123 ~~~~~v~~lL~~A~~~~i~~L~~~C~~~L~~~i~~~~n~~~ll~~A~~~~~~~-L~~~c~~~i~~n~~~v~~~~~f~~l~ 201 (591)
+|...-.=.+++|+.|-=.++.+.|.+...+.| .+++.+-+|...|+... ..+.|.+++.. +. ++++.+--
T Consensus 243 ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai---~~v~tvrDFt~ifd~Ya~FEE~~~~~~me-~a----~~~~~n~e 314 (835)
T KOG2047|consen 243 FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAI---QTVMTVRDFTQIFDAYAQFEESCVAAKME-LA----DEESGNEE 314 (835)
T ss_pred CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH---HhheehhhHHHHHHHHHHHHHHHHHHHHh-hh----hhcccChh
Confidence 444444456789999988888899988888764 45778888888887754 56778888876 21 11111100
Q ss_pred cCchhhhhHhhhcchhHHHHHHHHHhh----------------hhccccchhHHHHHHHHhh-cchhh-h-HHHHHHHHh
Q 007721 202 CSSEATERLANVGHASFLLYYFLSQVA----------------MEKDRVSNTTVMLLERLGE-CSTER-W-QRMLALHQL 262 (591)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~a~Ls~v~----------------~d~~~r~~~~v~lLe~~~~-~~~~~-~-~~~~a~~~l 262 (591)
-..+..-++....+-.......+..|. .-++. ....+.....+++ ..|.. . .....+...
T Consensus 315 d~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~-~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~f 393 (835)
T KOG2047|consen 315 DDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGN-AAEQINTYTEAVKTVDPKKAVGSPGTLWVEF 393 (835)
T ss_pred hhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCC-hHHHHHHHHHHHHccCcccCCCChhhHHHHH
Confidence 000000000000000000001111121 11111 1122333333332 11110 0 112356778
Q ss_pred hhHHhhhccHHHHHHHHHHHhhcccc------chhhhhHHHHHHhCChHHHHHHHHHHHHhcCC-------C---HHHHH
Q 007721 263 GCVMFEREEYKDACYYFEAAADAGHI------YSLAGLARAKYKVGQQYSAYKLINSIISEHKP-------T---GWMYQ 326 (591)
Q Consensus 263 G~~~~~~g~~~eA~~~f~~Al~~~~~------~a~~~la~~~~~~G~~~~A~~~~~~aI~~~~~-------~---g~a~~ 326 (591)
|..|-..|+++.|...|++|++.+.. ..+...|..-....+++.|...+.++...-.+ . ..+-.
T Consensus 394 aklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rl 473 (835)
T KOG2047|consen 394 AKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARL 473 (835)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHH
Confidence 88999999999999999999988542 23444555555666778888888776543111 1 11222
Q ss_pred HHH-----h-------cCCcHHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCC--C-hHHHHH-
Q 007721 327 ERS-----L-------YNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL--S-VDCLEL- 390 (591)
Q Consensus 327 ~r~-----~-------y~~~~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p--~-~~~~~~- 390 (591)
.++ . +|..+.-.+.|++++.|.=--++.-.|-|..+.+-.-+++|...|.|-|.+=| + .+.|..
T Consensus 474 hrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tY 553 (835)
T KOG2047|consen 474 HRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTY 553 (835)
T ss_pred HHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHH
Confidence 221 1 23335566789999999999999999999999999999999999999999843 4 455532
Q ss_pred --HHHHHHHcCCHHHHHHHHHHHHhcCCc-chh--hhhhchHhHHHHHHHhhhcccCchhhhhhhhhcccc--------c
Q 007721 391 --RAWLFIAADDYESALRDTLALLALESN-YMM--FHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSS--------V 457 (591)
Q Consensus 391 --r~~~~~~~g~~~~A~~d~~~al~l~P~-~~~--~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~--------~ 457 (591)
...-....-..+-|...|++|++..|- +.. |.--......-|+.++...-++.|.--+...+++.= .
T Consensus 554 Ltkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaa 633 (835)
T KOG2047|consen 554 LTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAA 633 (835)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 233455556789999999999999983 211 111111222223333333333322110111111000 0
Q ss_pred cccc---hHHHHHHHHHcCCCCc--hhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHHHH
Q 007721 458 DDIG---SLAVINQMLINDPGKS--FLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALS 532 (591)
Q Consensus 458 ~~~~---al~~~~~al~~~P~~~--~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~ 532 (591)
.-+| --..|++||+.=|.+- +...+-|..-.++|..+.|..+|--.-++-|-....-++-.|--+...|=.| .
T Consensus 634 e~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGne--d 711 (835)
T KOG2047|consen 634 EIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNE--D 711 (835)
T ss_pred HHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCH--H
Confidence 1111 1237888888877653 3455667777788888888888888877766666666666776665533333 3
Q ss_pred HHHHhhcccccHHHHHH
Q 007721 533 RAEKSISIERTFEAFFL 549 (591)
Q Consensus 533 ~~e~ai~l~~~~~~~~~ 549 (591)
-|+.-++|.+|.+|=|+
T Consensus 712 T~keMLRikRsvqa~yn 728 (835)
T KOG2047|consen 712 TYKEMLRIKRSVQATYN 728 (835)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 57788888888886554
No 223
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.62 E-value=6.1e-05 Score=76.59 Aligned_cols=89 Identities=21% Similarity=0.291 Sum_probs=79.1
Q ss_pred HHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHhc----CCcHHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHH
Q 007721 298 KYKVGQQYSAYKLINSIISEHKPTGWMYQERSLY----NLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAIS 373 (591)
Q Consensus 298 ~~~~G~~~~A~~~~~~aI~~~~~~g~a~~~r~~y----~~~~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~ 373 (591)
.+..|.++.|++.+.++|.++|+++.+|..|+.. .....|+.|++.|+++||+.+..|..||.+...+|++.+|-.
T Consensus 124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred HhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHH
Confidence 3556789999999999999999999999999642 233789999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCChH
Q 007721 374 EIDRIIVFKLSVD 386 (591)
Q Consensus 374 ~~~~al~l~p~~~ 386 (591)
++..|.+++-+..
T Consensus 204 dl~~a~kld~dE~ 216 (377)
T KOG1308|consen 204 DLALACKLDYDEA 216 (377)
T ss_pred HHHHHHhccccHH
Confidence 9999999876643
No 224
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.59 E-value=0.0021 Score=63.38 Aligned_cols=61 Identities=8% Similarity=-0.045 Sum_probs=51.1
Q ss_pred HHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007721 353 FPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS--VDCLELRAWLFIAADDYESALRDTLALLA 413 (591)
Q Consensus 353 ~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~--~~~~~~r~~~~~~~g~~~~A~~d~~~al~ 413 (591)
..-+....++..+|.|.-.+..+++.|+.+|. +.....+|.+-.+-||.+.|...|+++-+
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek 240 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEK 240 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 45566788999999999999999999999863 66566678899999999999999997664
No 225
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.54 E-value=0.00011 Score=49.26 Aligned_cols=33 Identities=30% Similarity=0.470 Sum_probs=26.5
Q ss_pred HHHHHhHHHHHHHcCCHHHHHHHHHHhhccccc
Q 007721 511 HERLVYEGWILYDTGHREEALSRAEKSISIERT 543 (591)
Q Consensus 511 ~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l~~~ 543 (591)
+++++.+|.+++.+|++++|+..|++|++++|+
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 467888888888888888888888888888886
No 226
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.00054 Score=69.50 Aligned_cols=76 Identities=21% Similarity=0.113 Sum_probs=65.2
Q ss_pred ChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcC---CC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhhc
Q 007721 351 LSFPYKYRAVAKMEEGQIRAAISEIDRIIVFK---LS--VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRV 425 (591)
Q Consensus 351 ~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~---p~--~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~ 425 (591)
.+..|..=|+=++..++|..|+..|.+.|+.+ |+ .-+|.||+.+...+|+|-.|+.|+.+|+.++|++..++.|+
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG 159 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence 35677888999999999999999999999984 44 34577899999999999999999999999999996655554
Q ss_pred h
Q 007721 426 S 426 (591)
Q Consensus 426 ~ 426 (591)
+
T Consensus 160 A 160 (390)
T KOG0551|consen 160 A 160 (390)
T ss_pred h
Confidence 4
No 227
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.03 Score=55.43 Aligned_cols=180 Identities=17% Similarity=0.144 Sum_probs=139.2
Q ss_pred ccHHHHHHHHHHHhhccccchhhhhHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHhcC-----CcHHHHHHHHHH
Q 007721 270 EEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYN-----LGREKIVDLNYA 344 (591)
Q Consensus 270 g~~~eA~~~f~~Al~~~~~~a~~~la~~~~~~G~~~~A~~~~~~aI~~~~~~g~a~~~r~~y~-----~~~eA~~dl~~A 344 (591)
.+|.++..+|+..+..+ ..-..|+.....+|..+|.+-.+++-|.... ...+-+..++.+
T Consensus 40 e~fr~~m~YfRAI~~~~---------------E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI 104 (318)
T KOG0530|consen 40 EDFRDVMDYFRAIIAKN---------------EKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEI 104 (318)
T ss_pred hhHHHHHHHHHHHHhcc---------------ccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 35677777775433332 2234578888999999998877776664322 125667788999
Q ss_pred HHcCCCChHHHHhHHHHHHHhCCHH-HHHHHHHHHHhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhh
Q 007721 345 SELDPTLSFPYKYRAVAKMEEGQIR-AAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFH 422 (591)
Q Consensus 345 i~LdP~~~~ay~~rg~~l~~l~~~~-eAl~~~~~al~l~p-~~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~ 422 (591)
++-+|.+.+.|..|-.+.-.+|++. .=++...++|..+. +..+|..|-|+....++|+.=+......|+.|--+
T Consensus 105 ~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~N---- 180 (318)
T KOG0530|consen 105 IEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRN---- 180 (318)
T ss_pred HHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhc----
Confidence 9999999999999999999999988 88999999999888 58899999999999999999999999999988644
Q ss_pred hhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccch-------HHHHHHHHHcCCCCchhHhhhHHHHHH
Q 007721 423 GRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGS-------LAVINQMLINDPGKSFLRFRQSLLLLR 489 (591)
Q Consensus 423 ~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~a-------l~~~~~al~~~P~~~~~~~~~g~~l~~ 489 (591)
=.+|.+.|-.+....+.-+ +...-.+|.+-|++-.+|+.+.-++..
T Consensus 181 ---------------------NSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 181 ---------------------NSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLEL 233 (318)
T ss_pred ---------------------cchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence 2357777777766544332 335667888899999998887766665
No 228
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.51 E-value=0.17 Score=52.90 Aligned_cols=288 Identities=18% Similarity=0.127 Sum_probs=192.3
Q ss_pred HhhhHHhhhccHHHHHHHHHHHhhc---cccc-hhhhhHHHHHHhCChHHHHHHHHHHHHhcC----CCHHHHHHHHhcC
Q 007721 261 QLGCVMFEREEYKDACYYFEAAADA---GHIY-SLAGLARAKYKVGQQYSAYKLINSIISEHK----PTGWMYQERSLYN 332 (591)
Q Consensus 261 ~lG~~~~~~g~~~eA~~~f~~Al~~---~~~~-a~~~la~~~~~~G~~~~A~~~~~~aI~~~~----~~g~a~~~r~~y~ 332 (591)
..|.+-...|+-..|.+.-.++-++ +... .+..-+..-..-|+++.|...|+..+..-. .+--.|.+-...+
T Consensus 89 StGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~G 168 (531)
T COG3898 89 STGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLG 168 (531)
T ss_pred hhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcc
Confidence 4577777778877777665555433 2211 222224456678999999998887765321 1111222222223
Q ss_pred CcHHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCC-ChHHH-HHHHHH------HHHcCCHHHH
Q 007721 333 LGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCL-ELRAWL------FIAADDYESA 404 (591)
Q Consensus 333 ~~~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p-~~~~~-~~r~~~------~~~~g~~~~A 404 (591)
..+-|...-++|-+..|....++...-....+.|++++|+.-.+...+-.- ..... ..|+.+ -.---|...|
T Consensus 169 areaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~A 248 (531)
T COG3898 169 AREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASA 248 (531)
T ss_pred cHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHH
Confidence 336677788899999999999999999999999999999998887665433 11111 112221 2233568899
Q ss_pred HHHHHHHHhcCCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccc-hHHHHHHHHHcCCCCchhHhhh
Q 007721 405 LRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIG-SLAVINQMLINDPGKSFLRFRQ 483 (591)
Q Consensus 405 ~~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~-al~~~~~al~~~P~~~~~~~~~ 483 (591)
..+-..+++|.|++.+.-.- ........ ++.+ +-.+++.+...+|.-..+
T Consensus 249 r~~A~~a~KL~pdlvPaav~------AAralf~d-------------------~~~rKg~~ilE~aWK~ePHP~ia---- 299 (531)
T COG3898 249 RDDALEANKLAPDLVPAAVV------AARALFRD-------------------GNLRKGSKILETAWKAEPHPDIA---- 299 (531)
T ss_pred HHHHHHHhhcCCccchHHHH------HHHHHHhc-------------------cchhhhhhHHHHHHhcCCChHHH----
Confidence 99999999999999652221 11011111 2222 245789999999875433
Q ss_pred HHHHHHhCCHHHHHHHHHHHH---hcCCchHHHHHhHHHHHHHcCCHHHHHHHHHHhhcccccHHHHHHHHHHhhhcCCC
Q 007721 484 SLLLLRLNCQKAAMRCLRLAR---NHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLD 560 (591)
Q Consensus 484 g~~l~~l~~~~eA~~~~~~Al---~l~p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l~~~~~~~~~~~~~~~~~~~~ 560 (591)
.++.+..--+-++.-+++|- .+.|+|.+........-++-|+|-.|-...|.++.+.|---+|.|.|-.=+-..=|
T Consensus 300 -~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGD 378 (531)
T COG3898 300 -LLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGD 378 (531)
T ss_pred -HHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCc
Confidence 23333333344555555554 56799999999999999999999999999999999999988998887654432223
Q ss_pred CCchhHHHHHHHHHhcCCCCC
Q 007721 561 PESSTYVIQLLEEALRCPSDG 581 (591)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~ 581 (591)
--.|-+.|-.|+|-|-|-
T Consensus 379 ---qg~vR~wlAqav~APrdP 396 (531)
T COG3898 379 ---QGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred ---hHHHHHHHHHHhcCCCCC
Confidence 457999999999999773
No 229
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=97.51 E-value=0.00041 Score=57.32 Aligned_cols=81 Identities=31% Similarity=0.380 Sum_probs=63.9
Q ss_pred eEEEEc-CeEEEhhHHHHhhcCHHHHHhhcCCCC--CCCCceeEecCCCCCHHHHHHHHHHH-----hcCC---CCC--C
Q 007721 57 VTFCVR-DKEISFVRNKIASLSSPFKAMLYGGFV--ESKRKTIDFSHDGVSVEGLRAVEVYT-----RTSR---VDL--F 123 (591)
Q Consensus 57 V~f~v~-g~~~~aHr~iLaa~S~yF~amf~~~~~--Es~~~~I~l~~~~vs~~~~~~ll~yl-----Ytg~---~~~--~ 123 (591)
|+++-+ |++|-..|- +|.-|.-.|+||.|.+. |...++|.+ +++...+++.+.+|+ ||+. +.. |
T Consensus 19 VkLvS~Ddhefiikre-~AmtSgTiraml~gpg~~se~~~n~v~f--~di~shiLeKvc~Yl~Yk~rY~~~s~eiPeF~I 95 (112)
T KOG3473|consen 19 VKLVSSDDHEFIIKRE-HAMTSGTIRAMLSGPGVFSEAEKNEVYF--RDIPSHILEKVCEYLAYKVRYTNSSTEIPEFDI 95 (112)
T ss_pred eEeecCCCcEEEEeeh-hhhhhhHHHHHHcCCccccccccceEEe--ccchHHHHHHHHHHhhheeeeccccccCCCCCC
Confidence 777764 566666555 46779999999998754 456679999 999999999999998 5655 211 8
Q ss_pred ChhHHHHHHHHHhhhCh
Q 007721 124 CPGIVLELLSFANRFCC 140 (591)
Q Consensus 124 ~~~~v~~lL~~A~~~~i 140 (591)
+++.+++||.+||.+.+
T Consensus 96 ppemaleLL~aAn~Lec 112 (112)
T KOG3473|consen 96 PPEMALELLMAANYLEC 112 (112)
T ss_pred CHHHHHHHHHHhhhhcC
Confidence 99999999999998753
No 230
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.45 E-value=0.2 Score=53.52 Aligned_cols=219 Identities=13% Similarity=0.112 Sum_probs=143.9
Q ss_pred HHHHhhcccc--chhhhhHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHhcCCcHHHHHHHHHHHHcCCCChHHHH
Q 007721 279 FEAAADAGHI--YSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKIVDLNYASELDPTLSFPYK 356 (591)
Q Consensus 279 f~~Al~~~~~--~a~~~la~~~~~~G~~~~A~~~~~~aI~~~~~~g~a~~~r~~y~~~~eA~~dl~~Ai~LdP~~~~ay~ 356 (591)
|+.-+..++- +++...-++.-..|+.+.-.+.|.+||..-|+...--+ |.- ..+.|.
T Consensus 311 YE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~-----------W~R----------YIYLWi 369 (677)
T KOG1915|consen 311 YEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRY-----------WRR----------YIYLWI 369 (677)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHH-----------HHH----------HHHHHH
Confidence 5555555432 36676777777778888888888888888776221111 110 012233
Q ss_pred hHH-HHHHHhCCHHHHHHHHHHHHhcCCC--h---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhhchHhHH
Q 007721 357 YRA-VAKMEEGQIRAAISEIDRIIVFKLS--V---DCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHL 430 (591)
Q Consensus 357 ~rg-~~l~~l~~~~eAl~~~~~al~l~p~--~---~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~~~~~~ 430 (591)
|-+ ..-+...+.+-+-..|+..|.+=|+ . ..|..-+.......+...|.+-+-.||-..|.+.-|-|-......
T Consensus 370 nYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElq 449 (677)
T KOG1915|consen 370 NYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQ 449 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHH
Confidence 322 1223457788888888888888885 1 224445567778888888888888888888887655544333222
Q ss_pred HHHHHhhhcccCchhhhhhhhhccccccccchHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCch
Q 007721 431 VKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE 510 (591)
Q Consensus 431 ~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~ 510 (591)
++.++.. -..|++-|+.+|.+--+|..-|.+-..||+-+.|..+|..|+.-..-+
T Consensus 450 -------L~efDRc------------------RkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ld 504 (677)
T KOG1915|consen 450 -------LREFDRC------------------RKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALD 504 (677)
T ss_pred -------HhhHHHH------------------HHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccc
Confidence 2222222 346777788889988899888888888999999999998888766544
Q ss_pred HHHHHhHHHHHH--HcCCHHHHHHHHHHhhccccc
Q 007721 511 HERLVYEGWILY--DTGHREEALSRAEKSISIERT 543 (591)
Q Consensus 511 ~~a~~~~G~~l~--~~g~~eeAl~~~e~ai~l~~~ 543 (591)
.--+....-+-+ ..|.++.|-+.|++-+...+-
T Consensus 505 mpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h 539 (677)
T KOG1915|consen 505 MPELLWKAYIDFEIEEGEFEKARALYERLLDRTQH 539 (677)
T ss_pred cHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhccc
Confidence 444444444433 348888888888888887553
No 231
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.45 E-value=0.00025 Score=47.53 Aligned_cols=31 Identities=16% Similarity=0.213 Sum_probs=15.2
Q ss_pred HHHHhHHHHHHHhCCHHHHHHHHHHHHhcCC
Q 007721 353 FPYKYRAVAKMEEGQIRAAISEIDRIIVFKL 383 (591)
Q Consensus 353 ~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p 383 (591)
.+|+++|.++..+|++++|+..|+++++++|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 3445555555555555555555555555544
No 232
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.0017 Score=63.32 Aligned_cols=118 Identities=16% Similarity=0.068 Sum_probs=94.8
Q ss_pred chhhhhHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHhcCCcHHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCH
Q 007721 289 YSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQI 368 (591)
Q Consensus 289 ~a~~~la~~~~~~G~~~~A~~~~~~aI~~~~~~g~a~~~r~~y~~~~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~ 368 (591)
.++.+.|+-++..|++.+|...|..||..-.++ +-+ -..|+. ..++||.....-+.|-..+++..|+|
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L----~lk--EkP~e~------eW~eLdk~~tpLllNy~QC~L~~~e~ 246 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNL----QLK--EKPGEP------EWLELDKMITPLLLNYCQCLLKKEEY 246 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHH----Hhc--cCCCCh------HHHHHHHhhhHHHHhHHHHHhhHHHH
Confidence 345567778999999999999999987643110 000 011122 24666666778899999999999999
Q ss_pred HHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc
Q 007721 369 RAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNY 418 (591)
Q Consensus 369 ~eAl~~~~~al~l~p~-~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~ 418 (591)
-|+++..+.+|...|. ..+++.||-++...=+.++|.+||.++++++|.-
T Consensus 247 yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 247 YEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL 297 (329)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence 9999999999999995 7888999999999999999999999999999975
No 233
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.022 Score=56.33 Aligned_cols=184 Identities=12% Similarity=0.074 Sum_probs=128.9
Q ss_pred ChHHHHHHHHHHHHhcCCCHHHHHHHHhcCCcHHHHHHHHHHHHcCCCChHHHHhHHHHHHHhC-CHHHHHHHHHHHHhc
Q 007721 303 QQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEG-QIRAAISEIDRIIVF 381 (591)
Q Consensus 303 ~~~~A~~~~~~aI~~~~~~g~a~~~r~~y~~~~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~-~~~eAl~~~~~al~l 381 (591)
++.+++..|..+|..+... ..|+.-...+|.++|.+.-.|.+|-.++..++ +..+=+..++.+++-
T Consensus 41 ~fr~~m~YfRAI~~~~E~S-------------~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~ 107 (318)
T KOG0530|consen 41 DFRDVMDYFRAIIAKNEKS-------------PRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIED 107 (318)
T ss_pred hHHHHHHHHHHHHhccccC-------------HHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 4555666666666665433 34555567899999999999999999998864 578888999999999
Q ss_pred CC-ChHHHHHHHHHHHHcCCHH-HHHHHHHHHHhcCCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccc
Q 007721 382 KL-SVDCLELRAWLFIAADDYE-SALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDD 459 (591)
Q Consensus 382 ~p-~~~~~~~r~~~~~~~g~~~-~A~~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~ 459 (591)
+| +.+.|+.|-.+...+|+.. .=+.-...++..|.++. ++.+-+.=+-.....|+.
T Consensus 108 npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNY------HaWshRqW~~r~F~~~~~---------------- 165 (318)
T KOG0530|consen 108 NPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNY------HAWSHRQWVLRFFKDYED---------------- 165 (318)
T ss_pred CccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccch------hhhHHHHHHHHHHhhHHH----------------
Confidence 99 5899999999989999887 77788888888887762 233322222222222222
Q ss_pred cchHHHHHHHHHcCCCCchhHhhhHHHHHH-hCCH-----HHHHHHHHHHHhcCCchHHHHHhHHHHHHH
Q 007721 460 IGSLAVINQMLINDPGKSFLRFRQSLLLLR-LNCQ-----KAAMRCLRLARNHSSSEHERLVYEGWILYD 523 (591)
Q Consensus 460 ~~al~~~~~al~~~P~~~~~~~~~g~~l~~-l~~~-----~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~ 523 (591)
-|+..++.|+.|-.+-.+|+.|=.+... .|=. +.=+...-+.+.+.|+|-.|..|+-=++-.
T Consensus 166 --EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 166 --ELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLEL 233 (318)
T ss_pred --HHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence 2778888888888888888766554443 2222 233445567788888888888777655553
No 234
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.20 E-value=0.03 Score=55.64 Aligned_cols=189 Identities=14% Similarity=0.110 Sum_probs=134.9
Q ss_pred ChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhhch
Q 007721 351 LSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS----VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVS 426 (591)
Q Consensus 351 ~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~----~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~~ 426 (591)
-+.-+++-|...++.|++++|+..|+++....|. ..+....+.++.+.|++++|+...++=+.+.|+++. -.=
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n---~dY 109 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN---ADY 109 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC---hhH
Confidence 3566788888999999999999999999988883 244556788899999999999999999999998741 111
Q ss_pred HhHHHHHHHhhhcccCchhhhhhhhhccccccccc----hHHHHHHHHHcCCCCchh-----------------HhhhHH
Q 007721 427 GDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIG----SLAVINQMLINDPGKSFL-----------------RFRQSL 485 (591)
Q Consensus 427 ~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~----al~~~~~al~~~P~~~~~-----------------~~~~g~ 485 (591)
+..++++. .....+... .|.. |...+...+..-|++.-+ -...|.
T Consensus 110 ~~YlkgLs--~~~~i~~~~------------rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~Iar 175 (254)
T COG4105 110 AYYLKGLS--YFFQIDDVT------------RDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIAR 175 (254)
T ss_pred HHHHHHHH--HhccCCccc------------cCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444433 111111110 1111 445777778888876533 224466
Q ss_pred HHHHhCCHHHHHHHHHHHHhcCCc---hHHHHHhHHHHHHHcCCHHHHHHHHHHhhcccccHHHHHHHHHHhhhc
Q 007721 486 LLLRLNCQKAAMRCLRLARNHSSS---EHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADT 557 (591)
Q Consensus 486 ~l~~l~~~~eA~~~~~~Al~l~p~---~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l~~~~~~~~~~~~~~~~~ 557 (591)
.+.+-|.+.+|+.-++..++--|+ -.+++..+..+++.+|-.++|= ..++.|..+...-.|+.-+|.+...
T Consensus 176 yY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~-~~~~vl~~N~p~s~~~~~~~~~~~~ 249 (254)
T COG4105 176 YYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAK-KTAKVLGANYPDSQWYKDAYRLLQR 249 (254)
T ss_pred HHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHH-HHHHHHHhcCCCCcchhhhhhcccc
Confidence 677789999999999999987665 4688999999999999999996 7788888766555576666665443
No 235
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=97.15 E-value=0.00096 Score=65.50 Aligned_cols=83 Identities=14% Similarity=0.124 Sum_probs=59.7
Q ss_pred eEEEEcCeEEEhhHHHHhhcCHHHHHhhcCCCCCCCC--ceeEecCCCCCHHHHHHHHHHHhcCCCCC--CChhHHHHHH
Q 007721 57 VTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKR--KTIDFSHDGVSVEGLRAVEVYTRTSRVDL--FCPGIVLELL 132 (591)
Q Consensus 57 V~f~v~g~~~~aHr~iLaa~S~yF~amf~~~~~Es~~--~~I~l~~~~vs~~~~~~ll~ylYtg~~~~--~~~~~v~~lL 132 (591)
|.++.....||+||++|++||++|+.+.+++-.-... ..|.+ -+++.++|+.+|.|+|||+... ....|+.=|-
T Consensus 133 ldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~--ag~dm~~feafLh~l~tgEfgmEd~~fqn~diL~ 210 (401)
T KOG2838|consen 133 LDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKF--AGFDMDAFEAFLHSLITGEFGMEDLGFQNSDILE 210 (401)
T ss_pred ceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhh--hccChHHHHHHHHHHHhcccchhhcCCchHHHHH
Confidence 6777777899999999999999999998775432222 26667 7999999999999999998762 2223333344
Q ss_pred HHHhhhChH
Q 007721 133 SFANRFCCE 141 (591)
Q Consensus 133 ~~A~~~~i~ 141 (591)
.++.-|++.
T Consensus 211 QL~edFG~~ 219 (401)
T KOG2838|consen 211 QLCEDFGCF 219 (401)
T ss_pred HHHHhhCCc
Confidence 444444443
No 236
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=97.15 E-value=0.0012 Score=67.40 Aligned_cols=113 Identities=17% Similarity=0.145 Sum_probs=86.3
Q ss_pred eEEEhhHHHHhhcCHHHHHhhcCCCCCCC-CceeEecCCCCCHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHhhhChHH
Q 007721 64 KEISFVRNKIASLSSPFKAMLYGGFVESK-RKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIVLELLSFANRFCCEE 142 (591)
Q Consensus 64 ~~~~aHr~iLaa~S~yF~amf~~~~~Es~-~~~I~l~~~~vs~~~~~~ll~ylYtg~~~~~~~~~v~~lL~~A~~~~i~~ 142 (591)
+.|.|.+-.|...-.||+..+.....++. ..+|+|+. ..+..+|+=+++|+...... ++++||..+|.=|+++++++
T Consensus 14 rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisV-hCDv~iF~WLm~yv~~~~p~-l~~~NvvsIliSS~FL~M~~ 91 (317)
T PF11822_consen 14 RDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISV-HCDVHIFEWLMRYVKGEPPS-LTPSNVVSILISSEFLQMES 91 (317)
T ss_pred eeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEE-ecChhHHHHHHHHhhcCCCc-CCcCcEEEeEehhhhhccHH
Confidence 58999999999999999999976332222 23566652 67999999999999975555 99999999999999999999
Q ss_pred HHHHHHHHHHhhcCCH------H---hHHHHHHHHHHhChHHHHH
Q 007721 143 MKSACDAHLASLVGDI------E---DALILIDYGLEERATLLVA 178 (591)
Q Consensus 143 L~~~C~~~L~~~i~~~------~---n~~~ll~~A~~~~~~~L~~ 178 (591)
|.+.|-.|+..+++.+ = |--.+..+|..++..+|..
T Consensus 92 Lve~cl~y~~~~~~~Iv~~~~nl~Cl~~~Ll~RLa~~~t~~el~~ 136 (317)
T PF11822_consen 92 LVEECLQYCHDHMSEIVASPCNLNCLNDNLLTRLADMFTHEELEA 136 (317)
T ss_pred HHHHHHHHHHHhHHHHHcCCCCcccCCHHHHHHHHHhcCcccHhH
Confidence 9999999997765410 0 1223556666666555554
No 237
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.14 E-value=0.092 Score=54.31 Aligned_cols=259 Identities=15% Similarity=0.084 Sum_probs=150.6
Q ss_pred HHHHHHHhhhHHhhhccHHHHHHHHHHHhhccc-------cchhhhhHHHHHHhCChHHHHHHHHHHHHhcCCC------
Q 007721 255 RMLALHQLGCVMFEREEYKDACYYFEAAADAGH-------IYSLAGLARAKYKVGQQYSAYKLINSIISEHKPT------ 321 (591)
Q Consensus 255 ~~~a~~~lG~~~~~~g~~~eA~~~f~~Al~~~~-------~~a~~~la~~~~~~G~~~~A~~~~~~aI~~~~~~------ 321 (591)
...++-++...+...-++.+++.+...-+..+- -+....+++++..+|.++.+++.|+++.....+.
T Consensus 82 ~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LE 161 (518)
T KOG1941|consen 82 LLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLE 161 (518)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceee
Confidence 445666666666666666666655544444421 1234446677777777777777777776654332
Q ss_pred -------HHHHHHHHhcCCcHHHHHHHHHHHHcCCCC----------hHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCC-
Q 007721 322 -------GWMYQERSLYNLGREKIVDLNYASELDPTL----------SFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL- 383 (591)
Q Consensus 322 -------g~a~~~r~~y~~~~eA~~dl~~Ai~LdP~~----------~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p- 383 (591)
|..+.....| ++|+-...+|.++-... ..+.+.++.+|..+|+.-.|.+..+.|-++..
T Consensus 162 lqvcv~Lgslf~~l~D~---~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~ 238 (518)
T KOG1941|consen 162 LQVCVSLGSLFAQLKDY---EKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQ 238 (518)
T ss_pred eehhhhHHHHHHHHHhh---hHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 3333222222 55555445555443332 24567789999999999999999999988865
Q ss_pred -ChHHHH-----HHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccc
Q 007721 384 -SVDCLE-----LRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSV 457 (591)
Q Consensus 384 -~~~~~~-----~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~ 457 (591)
...+.+ ..|.+|..+||.+.|-+-|++|...-..--.=.|++.+..- .|.||..+--... .
T Consensus 239 ~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g------------~Akc~~~~r~~~k-~ 305 (518)
T KOG1941|consen 239 HGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDG------------AAKCLETLRLQNK-I 305 (518)
T ss_pred hCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHH------------HHHHHHHHHHhhc-c
Confidence 233333 35678999999999999999997754321001122222221 1333332221100 0
Q ss_pred cccchHHHHHHHHHcCCCC------chhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHHH
Q 007721 458 DDIGSLAVINQMLINDPGK------SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEAL 531 (591)
Q Consensus 458 ~~~~al~~~~~al~~~P~~------~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl 531 (591)
---+++....+++++...- -..+-+.+.++.-+|..++=-..+.+|-+.. .+.-.|-|.|=...|--+|-+
T Consensus 306 ~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~~---~e~~L~Cg~CGe~~Glk~e~L 382 (518)
T KOG1941|consen 306 CNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHECV---EETELYCGLCGESIGLKNERL 382 (518)
T ss_pred cccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH---HHHhhhhhhhhhhhcCCcccc
Confidence 1122466666666654321 1346677777777887777666666654443 556667777766666666555
Q ss_pred H
Q 007721 532 S 532 (591)
Q Consensus 532 ~ 532 (591)
+
T Consensus 383 q 383 (518)
T KOG1941|consen 383 Q 383 (518)
T ss_pred c
Confidence 4
No 238
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.012 Score=59.31 Aligned_cols=157 Identities=16% Similarity=0.082 Sum_probs=104.9
Q ss_pred hHHHHHHHhCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhhchHhHHHHHHH
Q 007721 357 YRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLN 435 (591)
Q Consensus 357 ~rg~~l~~l~~~~eAl~~~~~al~l~p~-~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~~~~~~~~~l~ 435 (591)
.-|.-.++.|++.+|...|..+++..|. .+.....+.++...|+.++|..-+...-.-..+. .... +
T Consensus 139 ~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~--------~~~~---l- 206 (304)
T COG3118 139 AEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDK--------AAHG---L- 206 (304)
T ss_pred HHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhh--------HHHH---H-
Confidence 3444566778888888888888888885 5666667778888888888776655543333221 0000 1
Q ss_pred hhhcccCchhhhhhhhhccccccccchHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCc--hHHH
Q 007721 436 HHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSS--EHER 513 (591)
Q Consensus 436 ~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~--~~~a 513 (591)
.+|+.+..+....++ ...+.+.+..||++.++.+.++..+...|++++|++.+=..++.+-. +.++
T Consensus 207 ---------~a~i~ll~qaa~~~~---~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~ 274 (304)
T COG3118 207 ---------QAQIELLEQAAATPE---IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEA 274 (304)
T ss_pred ---------HHHHHHHHHHhcCCC---HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHH
Confidence 112222222222222 35689999999999999999999999999999999998887776543 4455
Q ss_pred HHhHHHHHHHcCCHHHHHHHHHHh
Q 007721 514 LVYEGWILYDTGHREEALSRAEKS 537 (591)
Q Consensus 514 ~~~~G~~l~~~g~~eeAl~~~e~a 537 (591)
--.+=.++.-.|.-|.+.-.|+|=
T Consensus 275 Rk~lle~f~~~g~~Dp~~~~~RRk 298 (304)
T COG3118 275 RKTLLELFEAFGPADPLVLAYRRK 298 (304)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHH
Confidence 555555666667666666666653
No 239
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.12 E-value=0.001 Score=47.75 Aligned_cols=40 Identities=18% Similarity=0.047 Sum_probs=27.3
Q ss_pred HHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCC-hHHHHHHH
Q 007721 353 FPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRA 392 (591)
Q Consensus 353 ~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~-~~~~~~r~ 392 (591)
.+|..+|.+|.++|++++|+..|+++|+.+|+ +..+...|
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 46677777777777777777777777777774 55554433
No 240
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.05 E-value=0.54 Score=49.29 Aligned_cols=245 Identities=15% Similarity=0.080 Sum_probs=163.9
Q ss_pred HHhhhccHHHHHHHHHHHhhccccchhhhhHHH---HHHhCChHHHHHHHHHHHHhcCCCHHHHHHH----HhcCCcHHH
Q 007721 265 VMFEREEYKDACYYFEAAADAGHIYSLAGLARA---KYKVGQQYSAYKLINSIISEHKPTGWMYQER----SLYNLGREK 337 (591)
Q Consensus 265 ~~~~~g~~~eA~~~f~~Al~~~~~~a~~~la~~---~~~~G~~~~A~~~~~~aI~~~~~~g~a~~~r----~~y~~~~eA 337 (591)
.-..-|+|++|.+-|+..+.-+... ..|+-.+ -..+|.++.|...-.++-..-|.+.|+.... ..-+.-++|
T Consensus 129 aal~eG~~~~Ar~kfeAMl~dPEtR-llGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~A 207 (531)
T COG3898 129 AALLEGDYEDARKKFEAMLDDPETR-LLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGA 207 (531)
T ss_pred HHHhcCchHHHHHHHHHHhcChHHH-HHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHH
Confidence 3445688899988888766554332 2333223 3357888888888888888888888877433 333333777
Q ss_pred HHHHHH---HHHcCCCChHHHHhHHHHHHH------hCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCCHHHHHHH
Q 007721 338 IVDLNY---ASELDPTLSFPYKYRAVAKME------EGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRD 407 (591)
Q Consensus 338 ~~dl~~---Ai~LdP~~~~ay~~rg~~l~~------l~~~~eAl~~~~~al~l~p~-~~~~~~r~~~~~~~g~~~~A~~d 407 (591)
+.-.+. +..+.|+-+ -..|+..+.. .-+...|..+-..+++++|+ ......-+..+...|+..++-.-
T Consensus 208 lkLvd~~~~~~vie~~~a--eR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~i 285 (531)
T COG3898 208 LKLVDAQRAAKVIEKDVA--ERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKI 285 (531)
T ss_pred HHHHHHHHHHHhhchhhH--HHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhH
Confidence 765543 333444433 2233333221 23477888899999999998 45556666788899999999999
Q ss_pred HHHHHhcCCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccc-hHHHHHHHHHcCCCCchhHhhhHHH
Q 007721 408 TLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIG-SLAVINQMLINDPGKSFLRFRQSLL 486 (591)
Q Consensus 408 ~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~-al~~~~~al~~~P~~~~~~~~~g~~ 486 (591)
++.+.+.+|.-.- ..+|....+-|-.. -+.-..+--++-|++.+..+..+..
T Consensus 286 lE~aWK~ePHP~i---------------------------a~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~a 338 (531)
T COG3898 286 LETAWKAEPHPDI---------------------------ALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEA 338 (531)
T ss_pred HHHHHhcCCChHH---------------------------HHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHH
Confidence 9999999986310 12222222221110 1223445567789999999999999
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHH-HHHcCCHHHHHHHHHHhhcc
Q 007721 487 LLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWI-LYDTGHREEALSRAEKSISI 540 (591)
Q Consensus 487 l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~-l~~~g~~eeAl~~~e~ai~l 540 (591)
-+.-|.+..|..-.+.+.+..|...- +.-++-| --.+|+-.+.-+..-|+++-
T Consensus 339 Alda~e~~~ARa~Aeaa~r~~pres~-~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 339 ALDAGEFSAARAKAEAAAREAPRESA-YLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHhccchHHHHHHHHHHhhhCchhhH-HHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 99999999999999999999999663 3444444 34569999998888888874
No 241
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.01 E-value=0.099 Score=51.99 Aligned_cols=162 Identities=19% Similarity=0.145 Sum_probs=126.4
Q ss_pred HHHHHHhhhHHhhhccHHHHHHHHHHHhhcccc-----chhhhhHHHHHHhCChHHHHHHHHHHHHhcCC---CHHHHHH
Q 007721 256 MLALHQLGCVMFEREEYKDACYYFEAAADAGHI-----YSLAGLARAKYKVGQQYSAYKLINSIISEHKP---TGWMYQE 327 (591)
Q Consensus 256 ~~a~~~lG~~~~~~g~~~eA~~~f~~Al~~~~~-----~a~~~la~~~~~~G~~~~A~~~~~~aI~~~~~---~g~a~~~ 327 (591)
...+++-|...++.|+|++|+..|++.....|. .+...++-++++.|+++.|+...++-|..+|+ ...+++-
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 456788999999999999999999876655331 25566777899999999999999999999874 5677777
Q ss_pred HHhcC--------Cc----HHHHHHHHHHHHcCCCCh-----------------HHHHhHHHHHHHhCCHHHHHHHHHHH
Q 007721 328 RSLYN--------LG----REKIVDLNYASELDPTLS-----------------FPYKYRAVAKMEEGQIRAAISEIDRI 378 (591)
Q Consensus 328 r~~y~--------~~----~eA~~dl~~Ai~LdP~~~-----------------~ay~~rg~~l~~l~~~~eAl~~~~~a 378 (591)
+|... +- .+|+.+|...+.--|+.. .-=+..|..|.+-|.+-.|+.-++.+
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v 193 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEV 193 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 76421 11 578999999999999883 23345788899999999999999999
Q ss_pred HhcCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc
Q 007721 379 IVFKLS----VDCLELRAWLFIAADDYESALRDTLALLALESNY 418 (591)
Q Consensus 379 l~l~p~----~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~ 418 (591)
++--|+ .+++.....+|.++|-.++|- ...++|..++-+
T Consensus 194 ~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~-~~~~vl~~N~p~ 236 (254)
T COG4105 194 LENYPDTSAVREALARLEEAYYALGLTDEAK-KTAKVLGANYPD 236 (254)
T ss_pred HhccccccchHHHHHHHHHHHHHhCChHHHH-HHHHHHHhcCCC
Confidence 998775 244555667899999988885 467788887543
No 242
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.00 E-value=0.037 Score=65.65 Aligned_cols=232 Identities=14% Similarity=0.074 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhc-CCC--hHHHHH---HHHHHHHcCCHHHHHHHHH
Q 007721 336 EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVF-KLS--VDCLEL---RAWLFIAADDYESALRDTL 409 (591)
Q Consensus 336 eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l-~p~--~~~~~~---r~~~~~~~g~~~~A~~d~~ 409 (591)
+-.+||++-+.-+|+.+..|.+--.-.++++..++|-+.+.|||.- |+. .+.++. .-+....-|.-+.-.+-|+
T Consensus 1442 esaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFe 1521 (1710)
T KOG1070|consen 1442 ESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFE 1521 (1710)
T ss_pred cCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHH
Confidence 3456777888888888888887777777788888888888888753 442 222221 2233444455666666677
Q ss_pred HHHhcCCcchhhhh------hch-HhHHHHHHHhhhcccC-chhhhhhhhhccccccccc-hHHHHHHHHHcCCC--Cch
Q 007721 410 ALLALESNYMMFHG------RVS-GDHLVKLLNHHVRSWS-PADCWIKLYDRWSSVDDIG-SLAVINQMLINDPG--KSF 478 (591)
Q Consensus 410 ~al~l~P~~~~~~~------~~~-~~~~~~~l~~~~~~~~-~a~~~~~l~~~~~~~~~~~-al~~~~~al~~~P~--~~~ 478 (591)
||-+..--|.-|.- +.. ....-+.++.+++.+. +-..|....+.+-+.++.+ |-.++.|||..=|. +.+
T Consensus 1522 RAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~ 1601 (1710)
T KOG1070|consen 1522 RACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVE 1601 (1710)
T ss_pred HHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHH
Confidence 77665543321000 000 0000011111111111 2334455555555555443 33355555555555 444
Q ss_pred hHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHHHHHHHHhhccc--ccHH-HHHHHHHHhh
Q 007721 479 LRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIE--RTFE-AFFLKAYILA 555 (591)
Q Consensus 479 ~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l~--~~~~-~~~~~~~~~~ 555 (591)
.----+.+-.+.|+.+.+...++-.+.-.|.-.+.+...----.+.|+-+-.-..|||+|.+. |.-. -||.|=..++
T Consensus 1602 ~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyE 1681 (1710)
T KOG1070|consen 1602 FISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYE 1681 (1710)
T ss_pred HHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHH
Confidence 444445555555555555555555555555555555555444555566666666677776653 3333 3444444444
Q ss_pred hcCCCCCchhHH
Q 007721 556 DTNLDPESSTYV 567 (591)
Q Consensus 556 ~~~~~~~~~~~~ 567 (591)
.+-=|-+.-.+|
T Consensus 1682 k~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1682 KSHGDEKNVEYV 1693 (1710)
T ss_pred HhcCchhhHHHH
Confidence 443344443333
No 243
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.99 E-value=0.26 Score=55.59 Aligned_cols=264 Identities=14% Similarity=0.035 Sum_probs=167.4
Q ss_pred HHHHHHhhhHHhh-----hccHHHHHHHHHHHhh-------ccccchhhhhHHHHHHhC-----ChHHHHHHHHHHHHhc
Q 007721 256 MLALHQLGCVMFE-----REEYKDACYYFEAAAD-------AGHIYSLAGLARAKYKVG-----QQYSAYKLINSIISEH 318 (591)
Q Consensus 256 ~~a~~~lG~~~~~-----~g~~~eA~~~f~~Al~-------~~~~~a~~~la~~~~~~G-----~~~~A~~~~~~aI~~~ 318 (591)
..+.+.+|.++.. .++.+.|+.+|..|.+ .+...+..++|+++.... +...|...+.++....
T Consensus 244 ~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g 323 (552)
T KOG1550|consen 244 SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG 323 (552)
T ss_pred hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC
Confidence 3455566665444 3578999999998877 466678889999888744 4566888888888877
Q ss_pred CCCHHHHHHHHh-cCC----cHHHHHHHHHHHHcCCCChHHHHhHHHHHHH----hCCHHHHHHHHHHHHhcCCChHHHH
Q 007721 319 KPTGWMYQERSL-YNL----GREKIVDLNYASELDPTLSFPYKYRAVAKME----EGQIRAAISEIDRIIVFKLSVDCLE 389 (591)
Q Consensus 319 ~~~g~a~~~r~~-y~~----~~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~----l~~~~eAl~~~~~al~l~p~~~~~~ 389 (591)
.+.+........ .+. ...|...|..|.. -.+..+++++|.++.. ..+...|...+.+|-+.+ ++.+.+
T Consensus 324 ~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~--~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~ 400 (552)
T KOG1550|consen 324 NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAK--AGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAY 400 (552)
T ss_pred CchHHHHHHHHHHcCCccccHHHHHHHHHHHHH--cCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHH
Confidence 665555444421 112 1567778877765 4677888888888875 357889999999999887 555555
Q ss_pred HHHHHHHHc-CCHHHHHHHHHHHHhcCCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccchHHHHHH
Q 007721 390 LRAWLFIAA-DDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQ 468 (591)
Q Consensus 390 ~r~~~~~~~-g~~~~A~~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~ 468 (591)
.++.++... ++++.+..-+....++.-.... ..+..+.... . ..+.......+...+...+.+
T Consensus 401 ~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q----~~a~~l~~~~----~--------~~~~~~~~~~~~~~~~~~~~~ 464 (552)
T KOG1550|consen 401 LLGAFYEYGVGRYDTALALYLYLAELGYEVAQ----SNAAYLLDQS----E--------EDLFSRGVISTLERAFSLYSR 464 (552)
T ss_pred HHHHHHHHccccccHHHHHHHHHHHhhhhHHh----hHHHHHHHhc----c--------ccccccccccchhHHHHHHHH
Confidence 565433322 8888887777777666544321 1111111000 0 001111000011112223333
Q ss_pred HHHcCCCCchhHhhhHHHHHHh----CCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHc----CCHHHHHHHHHHhhcc
Q 007721 469 MLINDPGKSFLRFRQSLLLLRL----NCQKAAMRCLRLARNHSSSEHERLVYEGWILYDT----GHREEALSRAEKSISI 540 (591)
Q Consensus 469 al~~~P~~~~~~~~~g~~l~~l----~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~----g~~eeAl~~~e~ai~l 540 (591)
+ ..++++.+.+.+|.++..- ..++-|...|.+|-.-. +.+.+|+|+.+-.- + +..|...|.+|.+.
T Consensus 465 a--~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~-~~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 465 A--AAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKV-LHLAKRYYDQASEE 538 (552)
T ss_pred H--HhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcch-hHHHHHHHHHHHhc
Confidence 3 3467777888888877764 44888999999988877 88999999987543 4 78888888888776
Q ss_pred cccH
Q 007721 541 ERTF 544 (591)
Q Consensus 541 ~~~~ 544 (591)
+...
T Consensus 539 ~~~~ 542 (552)
T KOG1550|consen 539 DSRA 542 (552)
T ss_pred Cchh
Confidence 5443
No 244
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.0047 Score=62.89 Aligned_cols=100 Identities=14% Similarity=0.132 Sum_probs=79.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccchHHHHH
Q 007721 388 LELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVIN 467 (591)
Q Consensus 388 ~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~ 467 (591)
+---|+-|.+-++|..|+..|.+.|+-.-.+. |+
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~---------------------------------------dl------- 117 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADP---------------------------------------DL------- 117 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCc---------------------------------------cH-------
Confidence 34478999999999999999999998664431 11
Q ss_pred HHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHHHHHHHHhhccc
Q 007721 468 QMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIE 541 (591)
Q Consensus 468 ~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l~ 541 (591)
++.+|+|||.+...+|++..|+.+..+|+.++|++.-+++-=+.|++.+.++++|+..-|..+.++
T Consensus 118 --------navLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 118 --------NAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred --------HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence 245688888888888888888888888888888888888888888888888888888877775553
No 245
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.90 E-value=0.071 Score=52.09 Aligned_cols=121 Identities=16% Similarity=0.021 Sum_probs=81.3
Q ss_pred HHhCChHHHHHHHHHHHHhcCCCHHHHH------HHHhc-----CCcHHHHHHHHHHHHcCCCC------hHHHHhHHHH
Q 007721 299 YKVGQQYSAYKLINSIISEHKPTGWMYQ------ERSLY-----NLGREKIVDLNYASELDPTL------SFPYKYRAVA 361 (591)
Q Consensus 299 ~~~G~~~~A~~~~~~aI~~~~~~g~a~~------~r~~y-----~~~~eA~~dl~~Ai~LdP~~------~~ay~~rg~~ 361 (591)
++.+++.+|+.++.++|+++.+.|.--. ..+.+ ...+.|+..|++|-++-... -..+...|..
T Consensus 84 ykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~y 163 (288)
T KOG1586|consen 84 YKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQY 163 (288)
T ss_pred hhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHH
Confidence 4556777777777777777654443322 11211 11266777777776653322 2334455666
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCh-------HHHHH-HHHHHHHcCCHHHHHHHHHHHHhcCCcch
Q 007721 362 KMEEGQIRAAISEIDRIIVFKLSV-------DCLEL-RAWLFIAADDYESALRDTLALLALESNYM 419 (591)
Q Consensus 362 l~~l~~~~eAl~~~~~al~l~p~~-------~~~~~-r~~~~~~~g~~~~A~~d~~~al~l~P~~~ 419 (591)
-..+++|.+||..|.++.....+. ..+.. -|++++...|.-.|.+.+++-.+++|.+.
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ 229 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFT 229 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccc
Confidence 667899999999999999875532 12334 45788999999999999999999999984
No 246
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.86 E-value=0.0041 Score=70.43 Aligned_cols=88 Identities=19% Similarity=0.226 Sum_probs=82.5
Q ss_pred cccchHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHHHHHHHHh
Q 007721 458 DDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKS 537 (591)
Q Consensus 458 ~~~~al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~~e~a 537 (591)
..-.|++..++.+...|+..-+....|+.+.|+|+.+||..+++.--.+-|++-.-+-.+-.++-++|++|+|+..||++
T Consensus 24 qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~ 103 (932)
T KOG2053|consen 24 QFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERA 103 (932)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 33337999999999999999999999999999999999999999888899999999999999999999999999999999
Q ss_pred hcccccHH
Q 007721 538 ISIERTFE 545 (591)
Q Consensus 538 i~l~~~~~ 545 (591)
+.-.|+-+
T Consensus 104 ~~~~P~ee 111 (932)
T KOG2053|consen 104 NQKYPSEE 111 (932)
T ss_pred HhhCCcHH
Confidence 99999955
No 247
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.86 E-value=0.0014 Score=43.87 Aligned_cols=32 Identities=31% Similarity=0.317 Sum_probs=19.0
Q ss_pred HHHHhHHHHHHHcCCHHHHHHHHHHhhccccc
Q 007721 512 ERLVYEGWILYDTGHREEALSRAEKSISIERT 543 (591)
Q Consensus 512 ~a~~~~G~~l~~~g~~eeAl~~~e~ai~l~~~ 543 (591)
++++.+|.++..+|++++|+..|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 45555666666666666666666666666553
No 248
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.85 E-value=0.041 Score=58.76 Aligned_cols=60 Identities=18% Similarity=0.102 Sum_probs=54.3
Q ss_pred chhHhhhHHHHHHhCCHHHHHHHHHHHHhcCC--chHHHHHhHHHHHHHcCCHHHHHHHHHH
Q 007721 477 SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSS--SEHERLVYEGWILYDTGHREEALSRAEK 536 (591)
Q Consensus 477 ~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p--~~~~a~~~~G~~l~~~g~~eeAl~~~e~ 536 (591)
...++|+|.++...|.++.|...+..|..+-| .+++|....=.+-+.+|+.+.|++...|
T Consensus 619 ~v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~~A~~lavyidL~~G~~q~al~~lk~ 680 (696)
T KOG2471|consen 619 GVLFANLAAALALQGHHDQAKSLLTHAATLLHSLVNVQATVLAVYIDLMLGRSQDALARLKQ 680 (696)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccHHHHHHHHHHHHhcCCCcchHHHHHh
Confidence 34689999999999999999999999999988 7889998888899999999999988765
No 249
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.85 E-value=0.082 Score=56.98 Aligned_cols=58 Identities=12% Similarity=0.059 Sum_probs=42.0
Q ss_pred HHHhHHHHHHHhCCHHHHHHHHHHHHhcCCCh---HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007721 354 PYKYRAVAKMEEGQIRAAISEIDRIIVFKLSV---DCLELRAWLFIAADDYESALRDTLAL 411 (591)
Q Consensus 354 ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~~---~~~~~r~~~~~~~g~~~~A~~d~~~a 411 (591)
+-..+|.+..++|+.+|||..++..++..|.. ...+++-.+++.+++|+++.+-+.|-
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 33446777788888888888888888877742 23455666788888888887776664
No 250
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=96.84 E-value=0.0037 Score=59.87 Aligned_cols=90 Identities=17% Similarity=0.159 Sum_probs=76.4
Q ss_pred eEEEEcCeEEEhhHHHHhhcCH--HHHHhhcCC---CCCCCCceeEecCCCCCHHHHHHHHHHHhcCCCCCCChhHHHHH
Q 007721 57 VTFCVRDKEISFVRNKIASLSS--PFKAMLYGG---FVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIVLEL 131 (591)
Q Consensus 57 V~f~v~g~~~~aHr~iLaa~S~--yF~amf~~~---~~Es~~~~I~l~~~~vs~~~~~~ll~ylYtg~~~~~~~~~v~~l 131 (591)
|.+-|||+.|-.-+--|.-+=| ..-+||.+. -.|+.+..+-| +-+|.-|+.||+|+..|.+...+.-+++++
T Consensus 11 vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lI---DRsp~yFepIlNyLr~Gq~~~~s~i~~lgv 87 (302)
T KOG1665|consen 11 VRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLI---DRSPKYFEPILNYLRDGQIPSLSDIDCLGV 87 (302)
T ss_pred heeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEE---ccCchhhHHHHHHHhcCceeecCCccHHHH
Confidence 9999999999887777766643 568899864 35566667777 678999999999999999987788899999
Q ss_pred HHHHhhhChHHHHHHHHH
Q 007721 132 LSFANRFCCEEMKSACDA 149 (591)
Q Consensus 132 L~~A~~~~i~~L~~~C~~ 149 (591)
|+.|++|+|-+|+++-+.
T Consensus 88 LeeArff~i~sL~~hle~ 105 (302)
T KOG1665|consen 88 LEEARFFQILSLKDHLED 105 (302)
T ss_pred HHHhhHHhhHhHHhHHhh
Confidence 999999999999988877
No 251
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.81 E-value=0.023 Score=51.83 Aligned_cols=113 Identities=21% Similarity=0.096 Sum_probs=75.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccchHHHHHHHH
Q 007721 391 RAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQML 470 (591)
Q Consensus 391 r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al 470 (591)
.+......|+.+.++..+++++.+-.......... ..|-... ...+++.
T Consensus 12 ~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~-------------~~W~~~~-----------------r~~l~~~- 60 (146)
T PF03704_consen 12 EARAAARAGDPEEAIELLEEALALYRGDFLPDLDD-------------EEWVEPE-----------------RERLREL- 60 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT-------------STTHHHH-----------------HHHHHHH-
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc-------------cHHHHHH-----------------HHHHHHH-
Confidence 34455677889999999999999876542100000 0010000 0011111
Q ss_pred HcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHHHHHHHHhhc
Q 007721 471 INDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSIS 539 (591)
Q Consensus 471 ~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~ 539 (591)
...+...++..+...|++++|++.+++++.++|-+-.++..+-.++..+|+..+|+..|++..+
T Consensus 61 -----~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 61 -----YLDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp -----HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 1234555778889999999999999999999999999999999999999999999999998643
No 252
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.75 E-value=0.23 Score=55.93 Aligned_cols=287 Identities=15% Similarity=0.019 Sum_probs=180.9
Q ss_pred hhhHHhhhccHHHHHHHHHHHhhccccchhhhhHHHHHHh-----CChHHHHHHHHHHHH-------h-----cCCCHHH
Q 007721 262 LGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKV-----GQQYSAYKLINSIIS-------E-----HKPTGWM 324 (591)
Q Consensus 262 lG~~~~~~g~~~eA~~~f~~Al~~~~~~a~~~la~~~~~~-----G~~~~A~~~~~~aI~-------~-----~~~~g~a 324 (591)
.|......++..+|..+|+.+...++..+...+|.+++.- .+.+.|+..+..+.. . .-..|.+
T Consensus 218 ~~~~~~~~~~~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~ 297 (552)
T KOG1550|consen 218 EGNERNESGELSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRL 297 (552)
T ss_pred cCcccccchhhhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHH
Confidence 3333344445678999999988889988888888776643 367889999988877 1 2247888
Q ss_pred HHHHHhcC--CcHHHHHHHHHHHHcCCCChHHHHhHHHHHHHhC---CHHHHHHHHHHHHhcCCChHHHHHHHHHHH---
Q 007721 325 YQERSLYN--LGREKIVDLNYASELDPTLSFPYKYRAVAKMEEG---QIRAAISEIDRIIVFKLSVDCLELRAWLFI--- 396 (591)
Q Consensus 325 ~~~r~~y~--~~~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~---~~~eAl~~~~~al~l~p~~~~~~~r~~~~~--- 396 (591)
|..+.... ....|...|.+|-++. ++.+.+.+|.++..-. ++..|...|.+|... -+.++.+..+.++.
T Consensus 298 Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~-G~~~A~~~la~~y~~G~ 374 (552)
T KOG1550|consen 298 YLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA-GHILAIYRLALCYELGL 374 (552)
T ss_pred HhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc-CChHHHHHHHHHHHhCC
Confidence 88774322 2377999999998875 5677788888888755 578999999999843 23455555554433
Q ss_pred -HcCCHHHHHHHHHHHHhcCCcchhhhhhchHhHHHHHHHhhh-cccCchhhhhhhhhccccccccchHH--HHHHH-HH
Q 007721 397 -AADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHV-RSWSPADCWIKLYDRWSSVDDIGSLA--VINQM-LI 471 (591)
Q Consensus 397 -~~g~~~~A~~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~-~~~~~a~~~~~l~~~~~~~~~~~al~--~~~~a-l~ 471 (591)
-.-+.+.|...|.+|.+.++= .+...++.+.... ..++.+. +...+.++.......+.+ +.++- ..
T Consensus 375 gv~r~~~~A~~~~k~aA~~g~~--------~A~~~~~~~~~~g~~~~~~~~-~~~~~~a~~g~~~~q~~a~~l~~~~~~~ 445 (552)
T KOG1550|consen 375 GVERNLELAFAYYKKAAEKGNP--------SAAYLLGAFYEYGVGRYDTAL-ALYLYLAELGYEVAQSNAAYLLDQSEED 445 (552)
T ss_pred CcCCCHHHHHHHHHHHHHccCh--------hhHHHHHHHHHHccccccHHH-HHHHHHHHhhhhHHhhHHHHHHHhcccc
Confidence 234889999999999999942 2333333222222 4444442 222333333332222111 11111 01
Q ss_pred cCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHc---CC-HHHHHHHHHHhhcccccHHHH
Q 007721 472 NDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDT---GH-REEALSRAEKSISIERTFEAF 547 (591)
Q Consensus 472 ~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~---g~-~eeAl~~~e~ai~l~~~~~~~ 547 (591)
+.+.. .....+.+...+.++...- +.+|...+|.+++.- ++ ++.|...|.+|-... -.+.
T Consensus 446 ~~~~~------------~~~~~~~~~~~~~~a~~~g--~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~--~~~~ 509 (552)
T KOG1550|consen 446 LFSRG------------VISTLERAFSLYSRAAAQG--NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG--AQAL 509 (552)
T ss_pred ccccc------------cccchhHHHHHHHHHHhcc--CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh--hHHH
Confidence 11110 0235666777777776544 778999999998876 44 999999999998887 5599
Q ss_pred HHHHHHhhhcCCCCCchhHHHHHHHHHhcC
Q 007721 548 FLKAYILADTNLDPESSTYVIQLLEEALRC 577 (591)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 577 (591)
|+.||-.+-..==+- .--+-.+...|..|
T Consensus 510 ~nlg~~~e~g~g~~~-~~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 510 FNLGYMHEHGEGIKV-LHLAKRYYDQASEE 538 (552)
T ss_pred hhhhhHHhcCcCcch-hHHHHHHHHHHHhc
Confidence 999998875432222 44444444444444
No 253
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.74 E-value=0.044 Score=58.98 Aligned_cols=157 Identities=15% Similarity=0.047 Sum_probs=99.4
Q ss_pred HhCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhhchHhHHHHHHHhhhcccC
Q 007721 364 EEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWS 442 (591)
Q Consensus 364 ~l~~~~eAl~~~~~al~l~p~-~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~ 442 (591)
+..+.+.-++.-.+||+++|+ +++|..++. ..-.-..+|.+.|+++++...... |+....+ +.-+.++
T Consensus 180 RERnp~aRIkaA~eALei~pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE~~l---g~s~~~~------~~g~~~e 248 (539)
T PF04184_consen 180 RERNPQARIKAAKEALEINPDCADAYILLAE--EEASTIVEAEELLRQAVKAGEASL---GKSQFLQ------HHGHFWE 248 (539)
T ss_pred hcCCHHHHHHHHHHHHHhhhhhhHHHhhccc--ccccCHHHHHHHHHHHHHHHHHhh---chhhhhh------cccchhh
Confidence 355677777788888888886 666554442 223346778888888877665431 1111111 0000000
Q ss_pred chhhhhhhhhccccccccchHHHHHHHHHcCCC--CchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCc--hHHHHHhHH
Q 007721 443 PADCWIKLYDRWSSVDDIGSLAVINQMLINDPG--KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSS--EHERLVYEG 518 (591)
Q Consensus 443 ~a~~~~~l~~~~~~~~~~~al~~~~~al~~~P~--~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~--~~~a~~~~G 518 (591)
. +..-+. ...+..++|.++.++|+.+||++.++..++..|. +-..+.++-
T Consensus 249 ----------~----------------~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLi 302 (539)
T PF04184_consen 249 ----------A----------------WHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLI 302 (539)
T ss_pred ----------h----------------hhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHH
Confidence 0 000011 1345677889999999999999999999998875 566899999
Q ss_pred HHHHHcCCHHHHHHHHHHhhcc-cccHH-HH----HHHHHHhhhc
Q 007721 519 WILYDTGHREEALSRAEKSISI-ERTFE-AF----FLKAYILADT 557 (591)
Q Consensus 519 ~~l~~~g~~eeAl~~~e~ai~l-~~~~~-~~----~~~~~~~~~~ 557 (591)
.+|+.+++|.++-+...|==.+ -|..+ -. .||+-+.+|+
T Consensus 303 e~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~ 347 (539)
T PF04184_consen 303 EALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAVGDK 347 (539)
T ss_pred HHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccc
Confidence 9999999999997766664333 24444 33 4566666665
No 254
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.69 E-value=0.0021 Score=43.05 Aligned_cols=33 Identities=9% Similarity=0.050 Sum_probs=30.7
Q ss_pred hhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCch
Q 007721 478 FLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE 510 (591)
Q Consensus 478 ~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~ 510 (591)
.+|+.+|.++..+|++++|+..|+++++++|++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 679999999999999999999999999999964
No 255
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.64 E-value=0.016 Score=52.84 Aligned_cols=62 Identities=18% Similarity=0.099 Sum_probs=50.3
Q ss_pred hHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007721 352 SFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLA 413 (591)
Q Consensus 352 ~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~-~~~~~~r~~~~~~~g~~~~A~~d~~~al~ 413 (591)
..+...++..+...|++++|+..+++++.++|- -..+...-.++...|+..+|++.|++..+
T Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 62 LDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 345677888899999999999999999999995 45566677799999999999999988754
No 256
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=96.55 E-value=0.012 Score=50.82 Aligned_cols=81 Identities=20% Similarity=0.150 Sum_probs=59.1
Q ss_pred eEEEE-cCeEEEhhHHHHhhcCHHHHHhhcCCCCCC-CCceeEecCCCCCHHHHHHHHHHHhcCCCCC------------
Q 007721 57 VTFCV-RDKEISFVRNKIASLSSPFKAMLYGGFVES-KRKTIDFSHDGVSVEGLRAVEVYTRTSRVDL------------ 122 (591)
Q Consensus 57 V~f~v-~g~~~~aHr~iLaa~S~yF~amf~~~~~Es-~~~~I~l~~~~vs~~~~~~ll~ylYtg~~~~------------ 122 (591)
|+++. +|..|...+.+. ..|.-++.|+.+...+. ....|.| ++|+..+|+.+++|++.-+-..
T Consensus 4 v~L~S~Dg~~f~v~~~~a-~~S~~i~~~l~~~~~~~~~~~~Ipl--~~v~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~w 80 (104)
T smart00512 4 IKLISSDGEVFEVEREVA-RQSKTIKAMIEDLGVDDENNNPIPL--PNVTSKILSKVIEYCEHHVDDPPSVADKDDIPTW 80 (104)
T ss_pred EEEEeCCCCEEEecHHHH-HHHHHHHHHHHccCcccCCCCCccC--CCcCHHHHHHHHHHHHHcccCCCCccccccccHH
Confidence 55554 678999999876 68999999997644332 2358999 9999999999999998532211
Q ss_pred ------CChhHHHHHHHHHhhhCh
Q 007721 123 ------FCPGIVLELLSFANRFCC 140 (591)
Q Consensus 123 ------~~~~~v~~lL~~A~~~~i 140 (591)
++.+.+.+|+.+|++++|
T Consensus 81 D~~F~~~d~~~l~dLl~AAnyL~I 104 (104)
T smart00512 81 DAEFLKIDQETLFELILAANYLDI 104 (104)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCC
Confidence 344567777777777654
No 257
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.53 E-value=0.015 Score=57.59 Aligned_cols=181 Identities=14% Similarity=0.074 Sum_probs=124.7
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhhchHhHHHHHHHhhhcccCchhhhh
Q 007721 369 RAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWI 448 (591)
Q Consensus 369 ~eAl~~~~~al~l~p~~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~ 448 (591)
+--+..++|=++.- .+....++..+|.|.-.+..+.++++-+|.-. ......++.+.-+..+.+.|....
T Consensus 166 ESsv~lW~KRl~~V-----my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~-----p~L~s~Lgr~~MQ~GD~k~a~~yf 235 (366)
T KOG2796|consen 166 ESSIRLWRKRLGRV-----MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQE-----PQLLSGLGRISMQIGDIKTAEKYF 235 (366)
T ss_pred hhHHHHHHHHHHHH-----HHHHHHHHhcchhhhhhHHHHHHHHHhCCccc-----HHHHHHHHHHHHhcccHHHHHHHH
Confidence 44455555544321 23445688999999999999999999885432 334444555555555555553211
Q ss_pred hhhhccccccccchHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHH
Q 007721 449 KLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHRE 528 (591)
Q Consensus 449 ~l~~~~~~~~~~~al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~e 528 (591)
+- +.--.+-|..-.++.-.+-+.+.++.-.+++.+|.+.+.+.++.+|.++-+.+|.+.|+.++|+..
T Consensus 236 ~~------------vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~ 303 (366)
T KOG2796|consen 236 QD------------VEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLK 303 (366)
T ss_pred HH------------HHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHH
Confidence 11 111223344445555667788888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccccHH-----HHHHHHHHhhhcCCCCCchhHHHHHHHHHh
Q 007721 529 EALSRAEKSISIERTFE-----AFFLKAYILADTNLDPESSTYVIQLLEEAL 575 (591)
Q Consensus 529 eAl~~~e~ai~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (591)
.|+...|.+..+.|.-. -|.|.-++ -|--+.|..+-++|-++.
T Consensus 304 DAiK~~e~~~~~~P~~~l~es~~~nL~tmy----EL~Ys~~~~~k~~l~~~i 351 (366)
T KOG2796|consen 304 DALKQLEAMVQQDPRHYLHESVLFNLTTMY----ELEYSRSMQKKQALLEAV 351 (366)
T ss_pred HHHHHHHHHhccCCccchhhhHHHHHHHHH----HHHhhhhhhHHHHHHHHH
Confidence 99999999999999643 34454332 122235666777776664
No 258
>PRK10941 hypothetical protein; Provisional
Probab=96.42 E-value=0.02 Score=58.09 Aligned_cols=66 Identities=18% Similarity=0.125 Sum_probs=59.5
Q ss_pred HHHhHHHHHHHhCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcch
Q 007721 354 PYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYM 419 (591)
Q Consensus 354 ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~-~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~ 419 (591)
-..|+-.++++.++++.|+...++++.++|+ +..+.-||.+|.++|.+..|+.|++.-++..|+.+
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp 249 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDP 249 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCch
Confidence 3456778899999999999999999999996 77777899999999999999999999999999874
No 259
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.37 E-value=0.13 Score=52.68 Aligned_cols=84 Identities=15% Similarity=0.184 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhc-CCChHHH-HHHH---HHHHHcCCHHHHHHHHH
Q 007721 335 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVF-KLSVDCL-ELRA---WLFIAADDYESALRDTL 409 (591)
Q Consensus 335 ~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l-~p~~~~~-~~r~---~~~~~~g~~~~A~~d~~ 409 (591)
.+|-...++.+.--|++.-++..--.++.-.|+...-...++|+|-. +|+.+++ |..| ..+.+.|-|++|...-+
T Consensus 120 h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ 199 (491)
T KOG2610|consen 120 HEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQAD 199 (491)
T ss_pred cHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHH
Confidence 66666777777777888888877777777788888888888888876 7765544 3333 45777788888877777
Q ss_pred HHHhcCCcc
Q 007721 410 ALLALESNY 418 (591)
Q Consensus 410 ~al~l~P~~ 418 (591)
+++++||.+
T Consensus 200 ralqiN~~D 208 (491)
T KOG2610|consen 200 RALQINRFD 208 (491)
T ss_pred hhccCCCcc
Confidence 777777654
No 260
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.35 E-value=0.19 Score=51.50 Aligned_cols=159 Identities=13% Similarity=0.084 Sum_probs=114.4
Q ss_pred HHhhhHHhhhccHHHHHHHHHHHhhccccc--hhhhhHHHHHHhCChHHHHHHHHHHHHh-cCCCHHHHHHHHh------
Q 007721 260 HQLGCVMFEREEYKDACYYFEAAADAGHIY--SLAGLARAKYKVGQQYSAYKLINSIISE-HKPTGWMYQERSL------ 330 (591)
Q Consensus 260 ~~lG~~~~~~g~~~eA~~~f~~Al~~~~~~--a~~~la~~~~~~G~~~~A~~~~~~aI~~-~~~~g~a~~~r~~------ 330 (591)
|.-..+...+|++-+|...+++.+.--|++ ++-..-++++-.|+...-...+.++|.. +++.+.-.+--|.
T Consensus 107 h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~ 186 (491)
T KOG2610|consen 107 HAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLE 186 (491)
T ss_pred hhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHH
Confidence 334455667788888877888877765554 3334455778888888778888888887 4555433333333
Q ss_pred -cCCcHHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhc-C-CCh-HH--HHHHHHHHHHcCCHHHH
Q 007721 331 -YNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVF-K-LSV-DC--LELRAWLFIAADDYESA 404 (591)
Q Consensus 331 -y~~~~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l-~-p~~-~~--~~~r~~~~~~~g~~~~A 404 (591)
.++.++|-+.-++|+++||.+.-+....+-++.+.+|+.|+.+...+--.. + ... .+ |..-+.++.+.+.|+.|
T Consensus 187 E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~a 266 (491)
T KOG2610|consen 187 ECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKA 266 (491)
T ss_pred HhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHH
Confidence 345589999999999999999999999999999999999999987765422 1 111 11 22356789999999999
Q ss_pred HHHHHHHH--hcCCcc
Q 007721 405 LRDTLALL--ALESNY 418 (591)
Q Consensus 405 ~~d~~~al--~l~P~~ 418 (591)
+.-|++-+ +++.++
T Consensus 267 leIyD~ei~k~l~k~D 282 (491)
T KOG2610|consen 267 LEIYDREIWKRLEKDD 282 (491)
T ss_pred HHHHHHHHHHHhhccc
Confidence 99998755 355555
No 261
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.33 E-value=0.0042 Score=39.53 Aligned_cols=32 Identities=28% Similarity=0.347 Sum_probs=21.1
Q ss_pred HHHHhHHHHHHHcCCHHHHHHHHHHhhccccc
Q 007721 512 ERLVYEGWILYDTGHREEALSRAEKSISIERT 543 (591)
Q Consensus 512 ~a~~~~G~~l~~~g~~eeAl~~~e~ai~l~~~ 543 (591)
.+++.+|.++..+|++++|+..|+++++++|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 35566666666666666666666666666664
No 262
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.33 E-value=0.33 Score=51.40 Aligned_cols=39 Identities=10% Similarity=-0.189 Sum_probs=26.7
Q ss_pred hHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHH
Q 007721 483 QSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWIL 521 (591)
Q Consensus 483 ~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l 521 (591)
.+.+....|+++.|.+.+++++++.|..-+..-+.+.+.
T Consensus 311 l~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~St~~ni~ 349 (374)
T PF13281_consen 311 LLEASVLAGDYEKAIQAAEKAFKLKPPAWELESTLENIK 349 (374)
T ss_pred HHHHHHHcCCHHHHHHHHHHHhhcCCcchhHHHHHHHHH
Confidence 444555678888888888888888877666555555543
No 263
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.32 E-value=0.012 Score=44.06 Aligned_cols=46 Identities=30% Similarity=0.368 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhhchHhHHHHHHHhh
Q 007721 386 DCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHH 437 (591)
Q Consensus 386 ~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~ 437 (591)
++++..+..+.++|+|++|.+..+++++++|++ ..+..+...+...
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N------~Qa~~L~~~i~~~ 47 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDN------RQAQSLKELIEDK 47 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-------HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc------HHHHHHHHHHHHH
Confidence 467788888899999999999999999999987 4555555555443
No 264
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=96.28 E-value=0.019 Score=60.25 Aligned_cols=85 Identities=18% Similarity=0.110 Sum_probs=69.4
Q ss_pred eEEEEcCeEEEhhHHHHhhcC--HHHHHhhcCCCCCCCCc--eeEecCCCCCHHHHHHHHHHHhcCCCCCCChhHHHHHH
Q 007721 57 VTFCVRDKEISFVRNKIASLS--SPFKAMLYGGFVESKRK--TIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIVLELL 132 (591)
Q Consensus 57 V~f~v~g~~~~aHr~iLaa~S--~yF~amf~~~~~Es~~~--~I~l~~~~vs~~~~~~ll~ylYtg~~~~~~~~~v~~lL 132 (591)
|.|-|||+.|.-.+.-|+... .+|-+++++.+.-...+ .|-| +=+|+.|..||+|+.||.+. ++.-....+|
T Consensus 13 V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFI---DRDPdlFaviLn~LRTg~L~-~~g~~~~~ll 88 (465)
T KOG2714|consen 13 VKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFI---DRDPDLFAVILNLLRTGDLD-ASGVFPERLL 88 (465)
T ss_pred EEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEe---cCCchHHHHHHHHHhcCCCC-CccCchhhhh
Confidence 999999999999999998776 68899999887655444 3666 66899999999999999999 6554444455
Q ss_pred H-HHhhhChHHHHH
Q 007721 133 S-FANRFCCEEMKS 145 (591)
Q Consensus 133 ~-~A~~~~i~~L~~ 145 (591)
. =|.+|++..|.+
T Consensus 89 hdEA~fYGl~~llr 102 (465)
T KOG2714|consen 89 HDEAMFYGLTPLLR 102 (465)
T ss_pred hhhhhhcCcHHHHH
Confidence 5 899999998875
No 265
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=96.26 E-value=0.0062 Score=65.27 Aligned_cols=107 Identities=14% Similarity=0.145 Sum_probs=74.2
Q ss_pred CHHHHHHHHHHHHhcCCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccchHHHHHHHHHcCCCCchh
Q 007721 400 DYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFL 479 (591)
Q Consensus 400 ~~~~A~~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~~P~~~~~ 479 (591)
.+..|+.+|.+++.-.|+.++++++.++..++. +|.. |-+.||-+.+.||+++|..-.+
T Consensus 389 ~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkR--------------------kW~~-d~~~AlrDch~Alrln~s~~ka 447 (758)
T KOG1310|consen 389 IVSGAISHYSRAIQYVPDAIYLLENRAAALMKR--------------------KWRG-DSYLALRDCHVALRLNPSIQKA 447 (758)
T ss_pred HHHHHHHHHHHHhhhccchhHHHHhHHHHHHhh--------------------hccc-cHHHHHHhHHhhccCChHHHHH
Confidence 345566666666666666665444443332211 2333 4444677889999999999999
Q ss_pred HhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHH
Q 007721 480 RFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEA 530 (591)
Q Consensus 480 ~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeA 530 (591)
||+++.+|..++++.||+.+...+....|.+.... ..++....+..+|
T Consensus 448 h~~la~aL~el~r~~eal~~~~alq~~~Ptd~a~~---~~v~~l~rDi~aa 495 (758)
T KOG1310|consen 448 HFRLARALNELTRYLEALSCHWALQMSFPTDVARQ---NFVLCLPRDISAA 495 (758)
T ss_pred HHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhhhh---hhhhccccchHHH
Confidence 99999999999999999999999999999766432 2344445555554
No 266
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.25 E-value=0.0048 Score=40.74 Aligned_cols=32 Identities=19% Similarity=0.194 Sum_probs=27.1
Q ss_pred HHHHhHHHHHHHcCCHHHHHHHHHHhhccccc
Q 007721 512 ERLVYEGWILYDTGHREEALSRAEKSISIERT 543 (591)
Q Consensus 512 ~a~~~~G~~l~~~g~~eeAl~~~e~ai~l~~~ 543 (591)
+|++++|++++.+|++++|+..|++.++.-|+
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 57888888888888888888888888887775
No 267
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=96.21 E-value=0.65 Score=55.67 Aligned_cols=227 Identities=11% Similarity=-0.004 Sum_probs=164.3
Q ss_pred HHHHHHHhhccccch--hhhhHHHHHHhCChHHHHHHHHHHHHh-c-------CCCHHHHHHHHh-cCCcHHHHHHHHHH
Q 007721 276 CYYFEAAADAGHIYS--LAGLARAKYKVGQQYSAYKLINSIISE-H-------KPTGWMYQERSL-YNLGREKIVDLNYA 344 (591)
Q Consensus 276 ~~~f~~Al~~~~~~a--~~~la~~~~~~G~~~~A~~~~~~aI~~-~-------~~~g~a~~~r~~-y~~~~eA~~dl~~A 344 (591)
.++|++-+.-.|..+ |...-.-++.+++.+.|.+...+|+.- + -+.-.+|.|.-. |+..+.=.+-|++|
T Consensus 1444 aeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRA 1523 (1710)
T KOG1070|consen 1444 AEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERA 1523 (1710)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHH
Confidence 457777766655554 333333567788889998888887642 2 134556666643 44334456689999
Q ss_pred HHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhh
Q 007721 345 SELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHG 423 (591)
Q Consensus 345 i~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~-~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~~ 423 (591)
-++.- -.-.|..+.-+|..-+++++|.+.++..++-=-+ ...|...+.+++...+-++|..-+.+|++--|..
T Consensus 1524 cqycd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~----- 1597 (1710)
T KOG1070|consen 1524 CQYCD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQ----- 1597 (1710)
T ss_pred HHhcc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchh-----
Confidence 88754 3457888999999999999999999999965333 5667777889999999999999999999999973
Q ss_pred hchHhHHHHHHHhhhcccCchhhhhhhhhccccccccc-hHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHH
Q 007721 424 RVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIG-SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRL 502 (591)
Q Consensus 424 ~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~-al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~ 502 (591)
.+++...+. +++ .-..+|.+ .-..++--|.-.|.-.++|.-....-.+.|..+-+...|+|
T Consensus 1598 ------------eHv~~Iskf---AqL---EFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeR 1659 (1710)
T KOG1070|consen 1598 ------------EHVEFISKF---AQL---EFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFER 1659 (1710)
T ss_pred ------------hhHHHHHHH---HHH---HhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHH
Confidence 233333333 222 22334444 56789999999999999999999999999999999999999
Q ss_pred HHhcCCchHH-HHHhHHHHHHHcCC
Q 007721 503 ARNHSSSEHE-RLVYEGWILYDTGH 526 (591)
Q Consensus 503 Al~l~p~~~~-a~~~~G~~l~~~g~ 526 (591)
++.+.=.=.. -.++.=|+-|...+
T Consensus 1660 vi~l~l~~kkmKfffKkwLeyEk~~ 1684 (1710)
T KOG1070|consen 1660 VIELKLSIKKMKFFFKKWLEYEKSH 1684 (1710)
T ss_pred HHhcCCChhHhHHHHHHHHHHHHhc
Confidence 9987643332 34555666665543
No 268
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.20 E-value=0.0046 Score=42.29 Aligned_cols=30 Identities=27% Similarity=0.380 Sum_probs=24.1
Q ss_pred HHHhHHHHHHHcCCHHHHHHHHHHhhcccc
Q 007721 513 RLVYEGWILYDTGHREEALSRAEKSISIER 542 (591)
Q Consensus 513 a~~~~G~~l~~~g~~eeAl~~~e~ai~l~~ 542 (591)
++.++|.++..+|++++|+..|++|+.+.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~ 30 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALAR 30 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 577889999999999999999999776644
No 269
>PRK10941 hypothetical protein; Provisional
Probab=96.18 E-value=0.017 Score=58.69 Aligned_cols=59 Identities=17% Similarity=0.263 Sum_probs=46.4
Q ss_pred hHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHH
Q 007721 462 SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWI 520 (591)
Q Consensus 462 al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~ 520 (591)
|+.+.+++|.++|+++.-+--+|.++.++||+..|+.+++.-++..|+++.+..-+-++
T Consensus 200 AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 200 ALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 37788888888888888888888888888888888888888888888888776554443
No 270
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.11 E-value=0.86 Score=47.64 Aligned_cols=228 Identities=17% Similarity=0.171 Sum_probs=139.9
Q ss_pred hHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCC-----hHHHHHHH----HHHHHcCCHHHHHHHHHHH-----------
Q 007721 352 SFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-----VDCLELRA----WLFIAADDYESALRDTLAL----------- 411 (591)
Q Consensus 352 ~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~-----~~~~~~r~----~~~~~~g~~~~A~~d~~~a----------- 411 (591)
......++...+..|+++++...++++...--+ ...-+.++ .-+..+...++++......
T Consensus 29 ~~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~lq~L~Elee~~~~~~~~~~~~~~~~~l~ 108 (352)
T PF02259_consen 29 PEYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVKLQQLVELEEIIELKSNLSQNPQDLKSLL 108 (352)
T ss_pred hhHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHhhcccHHHHHHHH
Confidence 367777888888889999888888887765211 11111121 1233444444444443211
Q ss_pred ------H-hcCCcchhhhhhchHhHHHHHHHhhhc----ccCchhhhhhhhhccccccccc-hHHHHHHHHHcCC----C
Q 007721 412 ------L-ALESNYMMFHGRVSGDHLVKLLNHHVR----SWSPADCWIKLYDRWSSVDDIG-SLAVINQMLINDP----G 475 (591)
Q Consensus 412 ------l-~l~P~~~~~~~~~~~~~~~~~l~~~~~----~~~~a~~~~~l~~~~~~~~~~~-al~~~~~al~~~P----~ 475 (591)
+ ...+++ .. -...+..-....+ ..+.+.+|++....-...+.+. |...+.++...++ .
T Consensus 109 ~~W~~Rl~~~~~~~---~~---~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~ 182 (352)
T PF02259_consen 109 KRWRSRLPNMQDDF---SV---WEPILSLRRLVLSLILLPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESL 182 (352)
T ss_pred HHHHHHHHHhccch---HH---HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC
Confidence 0 111111 11 1112222223333 6677788888888777777777 7778888888652 2
Q ss_pred CchhHhhhHHHHHHhCCHHHHHHHHHHHHhc--C--------------------------------CchHHHHHhHHHHH
Q 007721 476 KSFLRFRQSLLLLRLNCQKAAMRCLRLARNH--S--------------------------------SSEHERLVYEGWIL 521 (591)
Q Consensus 476 ~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l--~--------------------------------p~~~~a~~~~G~~l 521 (591)
.+...+-.+.++...|+.++|+..++..++. . ..-+.++.-+|...
T Consensus 183 ~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~ 262 (352)
T PF02259_consen 183 LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWL 262 (352)
T ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHH
Confidence 5778888999999999999999999998881 1 11245666777777
Q ss_pred HHc------CCHHHHHHHHHHhhcccccHH-HHHHHHHHhhhc-CCCCCch-----hHHHHHHHHHhcCCCCCcccc
Q 007721 522 YDT------GHREEALSRAEKSISIERTFE-AFFLKAYILADT-NLDPESS-----TYVIQLLEEALRCPSDGLRKG 585 (591)
Q Consensus 522 ~~~------g~~eeAl~~~e~ai~l~~~~~-~~~~~~~~~~~~-~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 585 (591)
..+ +..++++..|++|+.++|+.+ +++.-|.....- ..|+... ....+.+..|++|=--.|+-|
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~ 339 (352)
T PF02259_consen 263 DELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLG 339 (352)
T ss_pred HhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhC
Confidence 777 999999999999999999888 777655544322 2233111 245555555555433333333
No 271
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.11 E-value=0.19 Score=44.07 Aligned_cols=102 Identities=16% Similarity=0.222 Sum_probs=65.0
Q ss_pred HHHHhHHHHHH--HhCCHHHHHHHHHHHHhcCCC-----------hH--HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Q 007721 353 FPYKYRAVAKM--EEGQIRAAISEIDRIIVFKLS-----------VD--CLELRAWLFIAADDYESALRDTLALLALESN 417 (591)
Q Consensus 353 ~ay~~rg~~l~--~l~~~~eAl~~~~~al~l~p~-----------~~--~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~ 417 (591)
.+|+.++..-. ..|-|++|.+.+++|.+..-. .+ ++..+..++..+|+|++++..-+++|.
T Consensus 8 ~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~---- 83 (144)
T PF12968_consen 8 MAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALR---- 83 (144)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH----
Confidence 45555555444 458899999999999987421 11 233455678999999999988777764
Q ss_pred chhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccchHHHHHHHHHcCCCCch----hHhhhHHHHHHhCCH
Q 007721 418 YMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSF----LRFRQSLLLLRLNCQ 493 (591)
Q Consensus 418 ~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~~P~~~~----~~~~~g~~l~~l~~~ 493 (591)
|++|.. +++..... +-|++|.+|.-+|+.
T Consensus 84 ---YFNRRG--------------------------------------------EL~qdeGklWIaaVfsra~Al~~~Gr~ 116 (144)
T PF12968_consen 84 ---YFNRRG--------------------------------------------ELHQDEGKLWIAAVFSRAVALEGLGRK 116 (144)
T ss_dssp ---HHHHH----------------------------------------------TTSTHHHHHHHHHHHHHHHHHHTT-H
T ss_pred ---HHhhcc--------------------------------------------ccccccchhHHHHHHHHHHHHHhcCCh
Confidence 222222 11111111 235678888999999
Q ss_pred HHHHHHHHHHHh
Q 007721 494 KAAMRCLRLARN 505 (591)
Q Consensus 494 ~eA~~~~~~Al~ 505 (591)
+||+..|+.|-+
T Consensus 117 ~eA~~~fr~agE 128 (144)
T PF12968_consen 117 EEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998865
No 272
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=96.10 E-value=0.19 Score=51.59 Aligned_cols=192 Identities=15% Similarity=0.062 Sum_probs=124.7
Q ss_pred HHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007721 335 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLAL 414 (591)
Q Consensus 335 ~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~~~~~~~r~~~~~~~g~~~~A~~d~~~al~l 414 (591)
+||+.--.-...|=|..++++.-.+.++...-+...=+..=-..|-+.-......+|+. +++++..+++|+..
T Consensus 213 ~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r~l-------I~eg~all~rA~~~ 285 (415)
T COG4941 213 DEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDRAL-------IDEGLALLDRALAS 285 (415)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhHHH-------HHHHHHHHHHHHHc
Confidence 78888888899999999999999888887655433211111111111111122344544 46777777777775
Q ss_pred CCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccchHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHH
Q 007721 415 ESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQK 494 (591)
Q Consensus 415 ~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~ 494 (591)
.- .+=++++..+...--.-..+ .-.|-..+.-+.++|..-..+|..-.|++.++.+.-=++
T Consensus 286 ~~--------pGPYqlqAAIaa~HA~a~~a-----------edtDW~~I~aLYdaL~~~apSPvV~LNRAVAla~~~Gp~ 346 (415)
T COG4941 286 RR--------PGPYQLQAAIAALHARARRA-----------EDTDWPAIDALYDALEQAAPSPVVTLNRAVALAMREGPA 346 (415)
T ss_pred CC--------CChHHHHHHHHHHHHhhccc-----------CCCChHHHHHHHHHHHHhCCCCeEeehHHHHHHHhhhHH
Confidence 52 22233333221111111111 012222455566666666666777889999999999999
Q ss_pred HHHHHHHHHHhc--CCchHHHHHhHHHHHHHcCCHHHHHHHHHHhhcccccHH-HHHHHHH
Q 007721 495 AAMRCLRLARNH--SSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE-AFFLKAY 552 (591)
Q Consensus 495 eA~~~~~~Al~l--~p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l~~~~~-~~~~~~~ 552 (591)
.++...+...+- -..++..|-.+|-.|-++|+.+||-..|++||.+-++-. .=|++..
T Consensus 347 agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~r 407 (415)
T COG4941 347 AGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQR 407 (415)
T ss_pred hHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 999998877766 566788889999999999999999999999999987765 5555543
No 273
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.02 E-value=0.4 Score=54.41 Aligned_cols=249 Identities=14% Similarity=0.050 Sum_probs=123.1
Q ss_pred HhhhccHHHHHHHHHHHhhccccchhhhhHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHhcCCcHHHHHHHHHHH
Q 007721 266 MFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKIVDLNYAS 345 (591)
Q Consensus 266 ~~~~g~~~eA~~~f~~Al~~~~~~a~~~la~~~~~~G~~~~A~~~~~~aI~~~~~~g~a~~~r~~y~~~~eA~~dl~~Ai 345 (591)
..+.|-+++|+..|++--. +-.+...|..+|++.+|++.-+.--.. .+-..|++-+.| -+|..|...|+
T Consensus 810 AieLgMlEeA~~lYr~ckR------~DLlNKlyQs~g~w~eA~eiAE~~DRi--HLr~Tyy~yA~~---Lear~Di~~Al 878 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKR------YDLLNKLYQSQGMWSEAFEIAETKDRI--HLRNTYYNYAKY---LEARRDIEAAL 878 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHH------HHHHHHHHHhcccHHHHHHHHhhccce--ehhhhHHHHHHH---HHhhccHHHHH
Confidence 3444455666655554211 223445566666666665433221111 122333333333 33333333333
Q ss_pred HcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhhc
Q 007721 346 ELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRV 425 (591)
Q Consensus 346 ~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~ 425 (591)
++-- .+-..+-.+..++..+-.+++-|-+- ..++..|...|.-+...|+.+.|+..|..|-.-- ..+
T Consensus 879 eyyE---K~~~hafev~rmL~e~p~~~e~Yv~~---~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~f-------s~V 945 (1416)
T KOG3617|consen 879 EYYE---KAGVHAFEVFRMLKEYPKQIEQYVRR---KRDESLYSWWGQYLESVGEMDAALSFYSSAKDYF-------SMV 945 (1416)
T ss_pred HHHH---hcCChHHHHHHHHHhChHHHHHHHHh---ccchHHHHHHHHHHhcccchHHHHHHHHHhhhhh-------hhe
Confidence 3211 11123344555565666665555332 2334445556667788888888888888764321 112
Q ss_pred hHhHHHHHHHhhhcccCchhhhhhhhhccccccccchHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHh
Q 007721 426 SGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARN 505 (591)
Q Consensus 426 ~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~ 505 (591)
.....++ ..++| ..|+...++--+.+.+|.-+...|++.+|+..|.+|-.
T Consensus 946 rI~C~qG-------k~~kA-----------------------a~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 946 RIKCIQG-------KTDKA-----------------------ARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred eeEeecc-------CchHH-----------------------HHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 1111111 11111 12333444444445555555555555555555554432
Q ss_pred cC--------CchHHHHHhHHH------------HHHHcC-CHHHHHHHHHHhhcccccHH-HHHHH---HHHhhhcCCC
Q 007721 506 HS--------SSEHERLVYEGW------------ILYDTG-HREEALSRAEKSISIERTFE-AFFLK---AYILADTNLD 560 (591)
Q Consensus 506 l~--------p~~~~a~~~~G~------------~l~~~g-~~eeAl~~~e~ai~l~~~~~-~~~~~---~~~~~~~~~~ 560 (591)
.. .+--+.++|++. .+-..| .++.|+-.|.||--+..-.| ||.-. |.-|--+-||
T Consensus 996 fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd 1075 (1416)
T KOG3617|consen 996 FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLD 1075 (1416)
T ss_pred HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcC
Confidence 21 122333333332 344455 99999999999988877777 66543 4445556788
Q ss_pred CCchhHHH
Q 007721 561 PESSTYVI 568 (591)
Q Consensus 561 ~~~~~~~~ 568 (591)
|.|-..++
T Consensus 1076 ~~sDp~ll 1083 (1416)
T KOG3617|consen 1076 AGSDPKLL 1083 (1416)
T ss_pred CCCCHHHH
Confidence 87765543
No 274
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.01 E-value=0.025 Score=49.32 Aligned_cols=97 Identities=19% Similarity=0.183 Sum_probs=64.0
Q ss_pred HHhhhccHHHHHHHHHHHhhccc--------------cchhhhhHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHH-H
Q 007721 265 VMFEREEYKDACYYFEAAADAGH--------------IYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQER-S 329 (591)
Q Consensus 265 ~~~~~g~~~eA~~~f~~Al~~~~--------------~~a~~~la~~~~~~G~~~~A~~~~~~aI~~~~~~g~a~~~r-~ 329 (591)
-.+.-|.|++|...+++|.++.. ...+.+++..+..+|++++++..-.+++. |.|| |
T Consensus 18 ~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~--------YFNRRG 89 (144)
T PF12968_consen 18 RQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALR--------YFNRRG 89 (144)
T ss_dssp HHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH--------HHHHH-
T ss_pred HHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH--------HHhhcc
Confidence 34556788999999999987621 12477888899999999988776665543 3333 2
Q ss_pred hcCCcHHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhc
Q 007721 330 LYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVF 381 (591)
Q Consensus 330 ~y~~~~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l 381 (591)
.....+..+ ...+-++||.++..+|+.+||+..|+++-+.
T Consensus 90 EL~qdeGkl------------WIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 90 ELHQDEGKL------------WIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp -TTSTHHHH------------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ccccccchh------------HHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 222111111 1235578999999999999999999998753
No 275
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.97 E-value=0.081 Score=58.32 Aligned_cols=82 Identities=21% Similarity=0.192 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCC-----hHHHHHHHHHHHHcCCHHHHHHHHH
Q 007721 335 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-----VDCLELRAWLFIAADDYESALRDTL 409 (591)
Q Consensus 335 ~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~-----~~~~~~r~~~~~~~g~~~~A~~d~~ 409 (591)
..+...+....+.-|+.+......|-++...|+.++|++.|++++..... .-+++.+++++.-++||++|...|.
T Consensus 250 ~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~ 329 (468)
T PF10300_consen 250 EEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFL 329 (468)
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHH
Confidence 66788899999999999999999999999999999999999999965443 2245678999999999999999999
Q ss_pred HHHhcCC
Q 007721 410 ALLALES 416 (591)
Q Consensus 410 ~al~l~P 416 (591)
+..+.+.
T Consensus 330 ~L~~~s~ 336 (468)
T PF10300_consen 330 RLLKESK 336 (468)
T ss_pred HHHhccc
Confidence 9988665
No 276
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.94 E-value=0.028 Score=48.59 Aligned_cols=89 Identities=16% Similarity=0.232 Sum_probs=75.9
Q ss_pred cccccccchHHHHHHHHHcCCCCc---hhHhhhHHHHHHhCC-----------HHHHHHHHHHHHhcCCchHHHHHhHHH
Q 007721 454 WSSVDDIGSLAVINQMLINDPGKS---FLRFRQSLLLLRLNC-----------QKAAMRCLRLARNHSSSEHERLVYEGW 519 (591)
Q Consensus 454 ~~~~~~~~al~~~~~al~~~P~~~---~~~~~~g~~l~~l~~-----------~~eA~~~~~~Al~l~p~~~~a~~~~G~ 519 (591)
|.+-+-+.||.+++..+...+++. ..+.-+|.++.++.. .-.|+++++++..+.|+.+-.++.+|.
T Consensus 7 ~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~~la~ 86 (111)
T PF04781_consen 7 FARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLFELAS 86 (111)
T ss_pred HHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHHHHHH
Confidence 334455668999999999999988 778899999977443 347999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHhhcc-cc
Q 007721 520 ILYDTGHREEALSRAEKSISI-ER 542 (591)
Q Consensus 520 ~l~~~g~~eeAl~~~e~ai~l-~~ 542 (591)
-+--.-.|++++...+|++++ +|
T Consensus 87 ~l~s~~~Ykk~v~kak~~Lsv~~p 110 (111)
T PF04781_consen 87 QLGSVKYYKKAVKKAKRGLSVTNP 110 (111)
T ss_pred HhhhHHHHHHHHHHHHHHhcccCC
Confidence 888888899999999999997 44
No 277
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.91 E-value=0.11 Score=57.36 Aligned_cols=113 Identities=18% Similarity=0.144 Sum_probs=89.9
Q ss_pred hHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCc----hHHHHHhHHHHHHHcCCHHHHHHHHHHh
Q 007721 462 SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSS----EHERLVYEGWILYDTGHREEALSRAEKS 537 (591)
Q Consensus 462 al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~----~~~a~~~~G~~l~~~g~~eeAl~~~e~a 537 (591)
+-..+++++..-|+.+...+..|.++...|+.++|++.+++|+..... .+-.++-+||++.-+++|++|...+.+-
T Consensus 252 a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L 331 (468)
T PF10300_consen 252 AEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRL 331 (468)
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHH
Confidence 566899999999999999999999999999999999999999964443 4566799999999999999999999999
Q ss_pred hcccccHHHHH--HHHHHhhh---cCCCCCchhHHHHHHHHH
Q 007721 538 ISIERTFEAFF--LKAYILAD---TNLDPESSTYVIQLLEEA 574 (591)
Q Consensus 538 i~l~~~~~~~~--~~~~~~~~---~~~~~~~~~~~~~~~~~~ 574 (591)
.....-.-||| .+|-.+.- ..-.++.-.....+++++
T Consensus 332 ~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 332 LKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 99877766553 44444332 333344446666666655
No 278
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.84 E-value=0.013 Score=37.04 Aligned_cols=34 Identities=12% Similarity=0.059 Sum_probs=31.1
Q ss_pred chhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCch
Q 007721 477 SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE 510 (591)
Q Consensus 477 ~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~ 510 (591)
+.+|+++|.++..+|++++|...++++++++|++
T Consensus 1 ~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred ChHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 3578999999999999999999999999999863
No 279
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.83 E-value=0.48 Score=45.26 Aligned_cols=82 Identities=18% Similarity=0.116 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHcCCCC---hHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHcCCHHHHHHHHH
Q 007721 335 REKIVDLNYASELDPTL---SFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSV--DCLELRAWLFIAADDYESALRDTL 409 (591)
Q Consensus 335 ~eA~~dl~~Ai~LdP~~---~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~~--~~~~~r~~~~~~~g~~~~A~~d~~ 409 (591)
++|...++.++..--+. +-+-.++|.++..+|++++|+..++..- +++. .....||-++..+||-++|...|.
T Consensus 106 d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~--~~~w~~~~~elrGDill~kg~k~~Ar~ay~ 183 (207)
T COG2976 106 DKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIK--EESWAAIVAELRGDILLAKGDKQEARAAYE 183 (207)
T ss_pred HHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc--cccHHHHHHHHhhhHHHHcCchHHHHHHHH
Confidence 55555565555432222 2345678999999999999999998776 5553 335779999999999999999999
Q ss_pred HHHhcCCcc
Q 007721 410 ALLALESNY 418 (591)
Q Consensus 410 ~al~l~P~~ 418 (591)
++++.+++.
T Consensus 184 kAl~~~~s~ 192 (207)
T COG2976 184 KALESDASP 192 (207)
T ss_pred HHHHccCCh
Confidence 999998764
No 280
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.81 E-value=1.1 Score=46.69 Aligned_cols=171 Identities=16% Similarity=0.054 Sum_probs=111.2
Q ss_pred CCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCC-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc-hhh
Q 007721 348 DPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-----SVDCLELRAWLFIAADDYESALRDTLALLALESNY-MMF 421 (591)
Q Consensus 348 dP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p-----~~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~-~~~ 421 (591)
.......|...+.+....|+++-|...+.++..+++ .+......+.++-..|+-.+|+..++..+.-.+.. ...
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence 667778899999999999999999999999998763 23444567888999999999999999999833221 000
Q ss_pred hhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccchHHHHHHHHHcCCCCchhHhhhHHHHHHh------CCHHH
Q 007721 422 HGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRL------NCQKA 495 (591)
Q Consensus 422 ~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~~P~~~~~~~~~g~~l~~l------~~~~e 495 (591)
... .....+.+. ..+.. .. -..--......+.++..+|.-...+ +..++
T Consensus 222 ~~~--~~~~~~~~~----~~~~~----------~~---------~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~ 276 (352)
T PF02259_consen 222 ISN--AELKSGLLE----SLEVI----------SS---------TNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDE 276 (352)
T ss_pred ccH--HHHhhcccc----ccccc----------cc---------cchhhhhHHHHHHHHHHHHHHHHhhccccccccHHH
Confidence 000 000000000 00000 00 0000001111235667777777777 99999
Q ss_pred HHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHH-----------------HHHHHHHHhhccccc
Q 007721 496 AMRCLRLARNHSSSEHERLVYEGWILYDTGHRE-----------------EALSRAEKSISIERT 543 (591)
Q Consensus 496 A~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~e-----------------eAl~~~e~ai~l~~~ 543 (591)
++..|+.|+.++|+...+++..|......-..+ .|+..|=+|+.+.+.
T Consensus 277 ~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 277 ILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 999999999999999999998888876653322 355666666665555
No 281
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=95.81 E-value=1.5 Score=44.84 Aligned_cols=83 Identities=14% Similarity=0.116 Sum_probs=61.5
Q ss_pred HHHHHHHHHcCCCCchhHhhhHHHHHH----hCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcC-------------
Q 007721 463 LAVINQMLINDPGKSFLRFRQSLLLLR----LNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTG------------- 525 (591)
Q Consensus 463 l~~~~~al~~~P~~~~~~~~~g~~l~~----l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g------------- 525 (591)
+..+.+|-+.. ++.+.++.|..+.. -.++++|..+|++|-+... ..+.+..| ++|..|
T Consensus 175 ~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~ 249 (292)
T COG0790 175 LYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAK 249 (292)
T ss_pred HHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhccccc
Confidence 44555555554 67777888866655 3477899999999999998 88999999 888887
Q ss_pred --CHHHHHHHHHHhhcccccHHHHHHH
Q 007721 526 --HREEALSRAEKSISIERTFEAFFLK 550 (591)
Q Consensus 526 --~~eeAl~~~e~ai~l~~~~~~~~~~ 550 (591)
+...|...+.++....+...-.-++
T Consensus 250 ~~~~~~a~~~~~~~~~~~~~~~~~~~~ 276 (292)
T COG0790 250 EEDKKQALEWLQKACELGFDNACEALR 276 (292)
T ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHH
Confidence 7777788888777776665544444
No 282
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.79 E-value=0.56 Score=46.91 Aligned_cols=158 Identities=11% Similarity=0.030 Sum_probs=111.3
Q ss_pred HHHhhhHHhhhccHHHHHHHHHHHhhccccchhhhhHHHHHHhCChHHHHHHHHHHHHhcCC-----CHHHHHHHHhcC-
Q 007721 259 LHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKP-----TGWMYQERSLYN- 332 (591)
Q Consensus 259 ~~~lG~~~~~~g~~~eA~~~f~~Al~~~~~~a~~~la~~~~~~G~~~~A~~~~~~aI~~~~~-----~g~a~~~r~~y~- 332 (591)
.-.-+.++.+-+++++|.....+... -.+.+.--.++.+..+.+-|...+.++..+..+ ++.+|.....-+
T Consensus 111 ~l~aa~i~~~~~~~deAl~~~~~~~~---lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~gge 187 (299)
T KOG3081|consen 111 LLLAAIIYMHDGDFDEALKALHLGEN---LEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGE 187 (299)
T ss_pred HHHhhHHhhcCCChHHHHHHHhccch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccch
Confidence 33456788889999999876654111 122222233566777777788888877776543 556665552211
Q ss_pred CcHHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCCHHHHH-HHHHH
Q 007721 333 LGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESAL-RDTLA 410 (591)
Q Consensus 333 ~~~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~-~~~~~~r~~~~~~~g~~~~A~-~d~~~ 410 (591)
...+|.-.|+..-+--|..+...+..+++.+.+||++||...+..||.-+++ |+.+.|.-.+-..+|.-.++. +...+
T Consensus 188 k~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~Q 267 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQ 267 (299)
T ss_pred hhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 1277877888888855667888999999999999999999999999999995 888888776666666665555 45667
Q ss_pred HHhcCCcch
Q 007721 411 LLALESNYM 419 (591)
Q Consensus 411 al~l~P~~~ 419 (591)
....+|.++
T Consensus 268 Lk~~~p~h~ 276 (299)
T KOG3081|consen 268 LKLSHPEHP 276 (299)
T ss_pred HHhcCCcch
Confidence 777888873
No 283
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.75 E-value=0.35 Score=47.74 Aligned_cols=163 Identities=13% Similarity=0.029 Sum_probs=88.8
Q ss_pred HhHHHHHHHhCCHHHHHHHHHHHHhcC-----CChHH-HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhhch--H
Q 007721 356 KYRAVAKMEEGQIRAAISEIDRIIVFK-----LSVDC-LELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVS--G 427 (591)
Q Consensus 356 ~~rg~~l~~l~~~~eAl~~~~~al~l~-----p~~~~-~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~~--~ 427 (591)
-.-|..+.++.++.|+...|+||..+- |++.+ ...++.=..+..+.++|++.|++++++--..-- -+++ .
T Consensus 75 EqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr--~~ma~el 152 (308)
T KOG1585|consen 75 EQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDR--DQMAFEL 152 (308)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccch--HHHHHHH
Confidence 334556777888888888888888773 33322 233555567778889999999998875433200 0011 1
Q ss_pred hHHHHHHHhhhcccCchhhhhhhhhccccccccchHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhc-
Q 007721 428 DHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNH- 506 (591)
Q Consensus 428 ~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l- 506 (591)
....+.+.-.++.+++|. ..+.+ .-....-+..-|..-.++...-++++-.+++..|..+++..-.+
T Consensus 153 ~gk~sr~lVrl~kf~Eaa---~a~lK---------e~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip 220 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAA---TAFLK---------EGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIP 220 (308)
T ss_pred HHHhhhHhhhhHHhhHHH---HHHHH---------hhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCc
Confidence 122222333334444442 01111 11222333334454455555555555566888888888875443
Q ss_pred ---CCchHHHHHhHHHHHHHcCCHHHHHHH
Q 007721 507 ---SSSEHERLVYEGWILYDTGHREEALSR 533 (591)
Q Consensus 507 ---~p~~~~a~~~~G~~l~~~g~~eeAl~~ 533 (591)
.|++...+-++ +--|+.|+.|+.-..
T Consensus 221 ~f~~sed~r~lenL-L~ayd~gD~E~~~kv 249 (308)
T KOG1585|consen 221 AFLKSEDSRSLENL-LTAYDEGDIEEIKKV 249 (308)
T ss_pred cccChHHHHHHHHH-HHHhccCCHHHHHHH
Confidence 34455444443 335677777776543
No 284
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.61 E-value=0.84 Score=48.40 Aligned_cols=111 Identities=16% Similarity=0.125 Sum_probs=78.2
Q ss_pred hHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHH--------hc----CCchHHHHHhHHHHHHHcCCHHH
Q 007721 462 SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLAR--------NH----SSSEHERLVYEGWILYDTGHREE 529 (591)
Q Consensus 462 al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al--------~l----~p~~~~a~~~~G~~l~~~g~~ee 529 (591)
|...|.++.+++| +-..-.|.+.+|...|...+.-.-.++.. +. .-++-..+-.+..+..-.|++++
T Consensus 245 Ai~~Y~kgFe~~~-~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~k 323 (374)
T PF13281_consen 245 AIEWYRKGFEIEP-DYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEK 323 (374)
T ss_pred HHHHHHHHHcCCc-cccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHH
Confidence 5779999999995 55667889999998887554432222222 11 11223344555666677899999
Q ss_pred HHHHHHHhhcccccHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHhcCCCCCcccccc
Q 007721 530 ALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQV 587 (591)
Q Consensus 530 Al~~~e~ai~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (591)
|.+.++++++++ .++|+++. .-.=|.|+-+.-+.|++.-+|.|-
T Consensus 324 a~~a~e~~~~l~--~~~W~l~S------------t~~ni~Li~~~~~~~~~~~~~~~~ 367 (374)
T PF13281_consen 324 AIQAAEKAFKLK--PPAWELES------------TLENIKLIRHFRKRPEEPSPKQQL 367 (374)
T ss_pred HHHHHHHHhhcC--CcchhHHH------------HHHHHHHHHHHhcCCCCCCchhhh
Confidence 999999999996 45676653 445689999999999997666654
No 285
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.60 E-value=0.019 Score=39.19 Aligned_cols=28 Identities=11% Similarity=0.158 Sum_probs=16.1
Q ss_pred HHHhHHHHHHHhCCHHHHHHHHHHHHhc
Q 007721 354 PYKYRAVAKMEEGQIRAAISEIDRIIVF 381 (591)
Q Consensus 354 ay~~rg~~l~~l~~~~eAl~~~~~al~l 381 (591)
+|.++|.++..+|++++|++.|+++|++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3556666666666666666666665544
No 286
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.58 E-value=0.71 Score=44.13 Aligned_cols=65 Identities=22% Similarity=0.225 Sum_probs=39.5
Q ss_pred HhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHHHHHHHHhhcccccHH
Q 007721 480 RFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE 545 (591)
Q Consensus 480 ~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l~~~~~ 545 (591)
-.|+|.++..+|.+++|+..+...-+.+= .+-...-+|-+|...|+-++|...|++|+...+|..
T Consensus 129 ~lRLArvq~q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 129 ALRLARVQLQQKKADAALKTLDTIKEESW-AAIVAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhccccccH-HHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 34566677777777777766554433211 122345567777777777777777777777655443
No 287
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.57 E-value=0.085 Score=49.15 Aligned_cols=92 Identities=13% Similarity=0.134 Sum_probs=71.1
Q ss_pred cCeEEEhhHHHHhhcCHHHHHhhcCCCCCCCCceeEecCCCCCHHHHHHHHHHHhcCCCC-----------------C--
Q 007721 62 RDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVD-----------------L-- 122 (591)
Q Consensus 62 ~g~~~~aHr~iLaa~S~yF~amf~~~~~Es~~~~I~l~~~~vs~~~~~~ll~ylYtg~~~-----------------~-- 122 (591)
+|+.|.+-+.++ -.|.-+++++...-.......|.| ++|+..+|..+++|++.-+-. .
T Consensus 13 DG~~f~ve~~~a-~~s~~i~~~~~~~~~~~~~~~IPl--~nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD 89 (162)
T KOG1724|consen 13 DGEIFEVEEEVA-RQSQTISAHMIEDGCADENDPIPL--PNVTSKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWD 89 (162)
T ss_pred CCceeehhHHHH-HHhHHHHHHHHHcCCCccCCcccc--CccCHHHHHHHHHHHHHcccccccccccccccccCCccHHH
Confidence 566777766654 678888888865433222267888 889999999999999972211 0
Q ss_pred -----CChhHHHHHHHHHhhhChHHHHHHHHHHHHhhcC
Q 007721 123 -----FCPGIVLELLSFANRFCCEEMKSACDAHLASLVG 156 (591)
Q Consensus 123 -----~~~~~v~~lL~~A~~~~i~~L~~~C~~~L~~~i~ 156 (591)
++..++.+|+.+||++.+++|...|++.+...+.
T Consensus 90 ~~Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~va~mik 128 (162)
T KOG1724|consen 90 AEFLKVDQGTLFDLILAANYLDIKGLLDLTCKTVANMIK 128 (162)
T ss_pred HHHHhcCHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHc
Confidence 3456899999999999999999999999999885
No 288
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.50 E-value=0.087 Score=44.23 Aligned_cols=76 Identities=14% Similarity=0.049 Sum_probs=55.1
Q ss_pred HHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCch--HHHHHhHHHHHHHcCCHHHHHHHHHHhh
Q 007721 463 LAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE--HERLVYEGWILYDTGHREEALSRAEKSI 538 (591)
Q Consensus 463 l~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~--~~a~~~~G~~l~~~g~~eeAl~~~e~ai 538 (591)
++-+++.++.+|++.++.+.+|..+...|++++|++.+-.+++.+|++ ..+.-.+=-++--+|.-+.-+..|+|-+
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 667888999999999999999999999999999999999999988876 4444444455666677666666666644
No 289
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=95.49 E-value=0.26 Score=50.54 Aligned_cols=84 Identities=13% Similarity=0.159 Sum_probs=61.1
Q ss_pred hHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchH-HHHHhHHHHHHHc--CCHHHHHHHHHHhh
Q 007721 462 SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEH-ERLVYEGWILYDT--GHREEALSRAEKSI 538 (591)
Q Consensus 462 al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~-~a~~~~G~~l~~~--g~~eeAl~~~e~ai 538 (591)
|..+|++++..-|.++++|..-..-|..+|+.+.|...|++++..-|... -...+.-|+-|.. |+.+.....++|+.
T Consensus 55 A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~ 134 (280)
T PF05843_consen 55 ARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAE 134 (280)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35566666666677777777777788888999999999999998888777 5556666766554 88888888888888
Q ss_pred cccccHH
Q 007721 539 SIERTFE 545 (591)
Q Consensus 539 ~l~~~~~ 545 (591)
++-|+..
T Consensus 135 ~~~~~~~ 141 (280)
T PF05843_consen 135 ELFPEDN 141 (280)
T ss_dssp HHTTTS-
T ss_pred HHhhhhh
Confidence 8877633
No 290
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.39 E-value=0.14 Score=42.98 Aligned_cols=77 Identities=14% Similarity=0.040 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCCh--HHHH-HHHHHHHHcCCHHHHHHHHHHHH
Q 007721 336 EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSV--DCLE-LRAWLFIAADDYESALRDTLALL 412 (591)
Q Consensus 336 eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~~--~~~~-~r~~~~~~~g~~~~A~~d~~~al 412 (591)
..+..++++++-+|++..+.+.+|..++..|++++|++.+-.+++-+++. +... ..-.++..+|.-+.....|++-+
T Consensus 6 ~~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 6 PDIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred ccHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999864 3222 23346777787777777776644
No 291
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=95.33 E-value=0.037 Score=55.90 Aligned_cols=72 Identities=15% Similarity=-0.009 Sum_probs=62.4
Q ss_pred hhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHHHHHHHHhhcccccHH-HHHHHHHH
Q 007721 482 RQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE-AFFLKAYI 553 (591)
Q Consensus 482 ~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l~~~~~-~~~~~~~~ 553 (591)
+.+.-..+.|+.+.|+..+.-|++++|++++++.-.|...---.+.-+|-++|-||+.|.|+.+ |--+++-+
T Consensus 121 ~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 121 KAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 3444457889999999999999999999999999999999999999999999999999999887 66665543
No 292
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=95.13 E-value=6 Score=45.90 Aligned_cols=204 Identities=13% Similarity=0.010 Sum_probs=141.4
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHcCCC---------ChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCCh------H
Q 007721 322 GWMYQERSLYNLGREKIVDLNYASELDPT---------LSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSV------D 386 (591)
Q Consensus 322 g~a~~~r~~y~~~~eA~~dl~~Ai~LdP~---------~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~~------~ 386 (591)
+|..+....| .+|-...+++...-|. .+...--+|.+....|+.++|++-.++++..=|.. -
T Consensus 422 aW~~~s~~r~---~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~ 498 (894)
T COG2909 422 AWLLASQHRL---AEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIV 498 (894)
T ss_pred HHHHHHccCh---HHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhh
Confidence 5555555445 7777777776666555 24556669999999999999999999999887731 2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccchHHHH
Q 007721 387 CLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVI 466 (591)
Q Consensus 387 ~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~ 466 (591)
+....+.+..-.|++++|+...+.+.++.-.|--++-.+-+......+...+.+...++. .... --..
T Consensus 499 ~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~---~~~~---------~~~~ 566 (894)
T COG2909 499 ALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQ---EKAF---------NLIR 566 (894)
T ss_pred hhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHH---HHHH---------HHHH
Confidence 345577889999999999999999999976664444444455555555555553222321 0000 1245
Q ss_pred HHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcC------CchHHH-HHhHHHHHHHcCCHHHHHHHHHHhhc
Q 007721 467 NQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHS------SSEHER-LVYEGWILYDTGHREEALSRAEKSIS 539 (591)
Q Consensus 467 ~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~------p~~~~a-~~~~G~~l~~~g~~eeAl~~~e~ai~ 539 (591)
.+-+...|.+..+.--++.++..-.|.+++..-.++.+++- |....+ +..++.+.+..|+.++|.....+.-.
T Consensus 567 ~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~ 646 (894)
T COG2909 567 EQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELER 646 (894)
T ss_pred HHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 67777788877776666666666666888888888877654 222322 34788899999999999999888777
Q ss_pred c
Q 007721 540 I 540 (591)
Q Consensus 540 l 540 (591)
+
T Consensus 647 l 647 (894)
T COG2909 647 L 647 (894)
T ss_pred H
Confidence 5
No 293
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.10 E-value=0.029 Score=36.88 Aligned_cols=33 Identities=9% Similarity=0.038 Sum_probs=30.8
Q ss_pred hhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCch
Q 007721 478 FLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE 510 (591)
Q Consensus 478 ~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~ 510 (591)
++++++|.++.++|++++|++.+++.++..|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 478999999999999999999999999999974
No 294
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=94.95 E-value=0.98 Score=51.47 Aligned_cols=55 Identities=11% Similarity=0.021 Sum_probs=36.3
Q ss_pred HhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHHHHHHHHhhc
Q 007721 480 RFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSIS 539 (591)
Q Consensus 480 ~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~ 539 (591)
||.+-.++.-+|+.++|-++.+ ...|--|-|.+|--+-..|++.+|+.-|.||-+
T Consensus 941 ~fs~VrI~C~qGk~~kAa~iA~-----esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 941 YFSMVRIKCIQGKTDKAARIAE-----ESGDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred hhhheeeEeeccCchHHHHHHH-----hcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 4444444444555555544333 344555778888889999999999988888754
No 295
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.95 E-value=0.035 Score=38.55 Aligned_cols=32 Identities=25% Similarity=0.209 Sum_probs=27.0
Q ss_pred HHHHHhHHHHHHHcCCHHHHHHHHHHhhcccc
Q 007721 511 HERLVYEGWILYDTGHREEALSRAEKSISIER 542 (591)
Q Consensus 511 ~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l~~ 542 (591)
+.++.++|+++..+|++++|.+.+++++++..
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 33 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRE 33 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHH
Confidence 35789999999999999999999999998754
No 296
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=94.94 E-value=0.13 Score=55.47 Aligned_cols=89 Identities=16% Similarity=-0.037 Sum_probs=79.8
Q ss_pred hHHHHHHHHHcCCCCchhHhhhHHHHHH---hCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHHHHHHHHhh
Q 007721 462 SLAVINQMLINDPGKSFLRFRQSLLLLR---LNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSI 538 (591)
Q Consensus 462 al~~~~~al~~~P~~~~~~~~~g~~l~~---l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai 538 (591)
++..|.+++..-|....++-|++.++.+ -|..-.|+++.-.|++++|..--||+++.-+|..++++.||++...-+.
T Consensus 393 ~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq 472 (758)
T KOG1310|consen 393 AISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQ 472 (758)
T ss_pred HHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHh
Confidence 4778999999999999999999999988 6788889999999999999999999999999999999999999988888
Q ss_pred cccccHHHHHHH
Q 007721 539 SIERTFEAFFLK 550 (591)
Q Consensus 539 ~l~~~~~~~~~~ 550 (591)
-..|+..|--.+
T Consensus 473 ~~~Ptd~a~~~~ 484 (758)
T KOG1310|consen 473 MSFPTDVARQNF 484 (758)
T ss_pred hcCchhhhhhhh
Confidence 888866554443
No 297
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.76 E-value=1.9 Score=45.77 Aligned_cols=173 Identities=13% Similarity=0.109 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCC--HHHHHHHHHHHHhcCCcchhhhh-hchHhHHHHHHHhhhcccCc
Q 007721 368 IRAAISEIDRIIVFKLS-VDCLELRAWLFIAADD--YESALRDTLALLALESNYMMFHG-RVSGDHLVKLLNHHVRSWSP 443 (591)
Q Consensus 368 ~~eAl~~~~~al~l~p~-~~~~~~r~~~~~~~g~--~~~A~~d~~~al~l~P~~~~~~~-~~~~~~~~~~l~~~~~~~~~ 443 (591)
.++=+....-+|+.+|+ +.+|+.|.+++...+. +..=++-+++++++||.+...-. |.-+.... +.-
T Consensus 91 ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~-------~~~-- 161 (421)
T KOG0529|consen 91 LDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQA-------ERS-- 161 (421)
T ss_pred hHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHH-------hcc--
Confidence 45555666677777775 6777777777665553 56777777788888876633111 11111100 000
Q ss_pred hhhhhhhhhccccccccchHHHHHHHHHcCCCCchhHhhhHHHHHHh------CC------HHHHHHHHHHHHhcCCchH
Q 007721 444 ADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRL------NC------QKAAMRCLRLARNHSSSEH 511 (591)
Q Consensus 444 a~~~~~l~~~~~~~~~~~al~~~~~al~~~P~~~~~~~~~g~~l~~l------~~------~~eA~~~~~~Al~l~p~~~ 511 (591)
+.+..+-+...+++|..++.|=.+|++|..+|-.+ |. ...-+.....|+--+|++.
T Consensus 162 ------------~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~Dq 229 (421)
T KOG0529|consen 162 ------------RNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQ 229 (421)
T ss_pred ------------cccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCcccc
Confidence 00112236688999999999999999999998842 31 2345677889999999999
Q ss_pred HHHHhHHHHHHHcCCHHHHHHHHHHhhc----ccccHH--HHHHHHHHhhhcCCCCCchh
Q 007721 512 ERLVYEGWILYDTGHREEALSRAEKSIS----IERTFE--AFFLKAYILADTNLDPESST 565 (591)
Q Consensus 512 ~a~~~~G~~l~~~g~~eeAl~~~e~ai~----l~~~~~--~~~~~~~~~~~~~~~~~~~~ 565 (591)
.+++|.=|.+-..-+.+ .|..+.+ ++-++. -++-....+.-+.++.|...
T Consensus 230 S~WfY~rWLl~~~~~~~----~~~~S~s~~ls~~~~~p~~~~l~~e~~~v~~~i~~E~~~ 285 (421)
T KOG0529|consen 230 SCWFYHRWLLGRGMRRE----CYIVSHSALLSESFSEPLIKYLRSEIGLVQSTIGSEFET 285 (421)
T ss_pred ceeeehHHhhccccccc----ccccccccccccccCCccHHHHHHHhhhhhhhhhhhccc
Confidence 99999888877754444 4433333 332222 55555555555555555554
No 298
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=94.74 E-value=0.18 Score=51.71 Aligned_cols=119 Identities=15% Similarity=0.018 Sum_probs=88.5
Q ss_pred cccccc-hHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHH-HHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHHHHH
Q 007721 456 SVDDIG-SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKA-AMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSR 533 (591)
Q Consensus 456 ~~~~~~-al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~e-A~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~ 533 (591)
+...++ |-.+|.+|+...+...+.|..-|..-...+...+ |...|+++++.-|++.+.....-.-|...|+.+.|-..
T Consensus 13 r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~l 92 (280)
T PF05843_consen 13 RTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARAL 92 (280)
T ss_dssp HHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHH
Confidence 333344 5679999997777789999999988788555555 99999999999999999998888999999999999999
Q ss_pred HHHhhcccccHH---HHHHHHHHhhhcCCCCCchhHHHHHHHHH
Q 007721 534 AEKSISIERTFE---AFFLKAYILADTNLDPESSTYVIQLLEEA 574 (591)
Q Consensus 534 ~e~ai~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (591)
|||++..-|.-. ..+.|=.-++-..-|.++-..|.+-.+++
T Consensus 93 fer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 93 FERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999755444 56666555665555666656666555554
No 299
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=94.62 E-value=0.19 Score=38.89 Aligned_cols=56 Identities=23% Similarity=0.191 Sum_probs=44.0
Q ss_pred eEEEE-cCeEEEhhHHHHhhcCHHHHHhhcCCCCCCCCceeEecCCCCCHHHHHHHHHHHhc
Q 007721 57 VTFCV-RDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRT 117 (591)
Q Consensus 57 V~f~v-~g~~~~aHr~iLaa~S~yF~amf~~~~~Es~~~~I~l~~~~vs~~~~~~ll~ylYt 117 (591)
|+++- +|+.|.+.+.+. ..|..++.|+.+...+.. .|.+ ++|+..+++.+++|++.
T Consensus 3 v~L~SsDg~~f~V~~~~a-~~S~~i~~ml~~~~~~~~--~Ipl--~~v~~~~L~kViewc~~ 59 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREAA-KQSKTIKNMLEDLGDEDE--PIPL--PNVSSRILKKVIEWCEH 59 (62)
T ss_dssp EEEEETTSEEEEEEHHHH-TTSHHHHHHHHCTCCCGT--EEEE--TTS-HHHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHHH-HHhHHHHHHHhhhccccc--cccc--CccCHHHHHHHHHHHHh
Confidence 45554 678899888876 589999999986544443 8999 99999999999999863
No 300
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.60 E-value=8.3 Score=41.87 Aligned_cols=191 Identities=14% Similarity=0.076 Sum_probs=122.8
Q ss_pred hccHHHHHHHHHHHhhc----cccc------------hhhhhHHHHHHhCChHHHHHHHHHHHHhc---CC-------CH
Q 007721 269 REEYKDACYYFEAAADA----GHIY------------SLAGLARAKYKVGQQYSAYKLINSIISEH---KP-------TG 322 (591)
Q Consensus 269 ~g~~~eA~~~f~~Al~~----~~~~------------a~~~la~~~~~~G~~~~A~~~~~~aI~~~---~~-------~g 322 (591)
.|=+++|+++-+++|.. +..+ .+-.+..+....|++..|+.....+.... |. .+
T Consensus 288 ~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~ 367 (629)
T KOG2300|consen 288 AGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEA 367 (629)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHH
Confidence 35567777766666654 1111 11123345567899999988777665532 22 24
Q ss_pred HHHHHHHhcCCc----HHHHHHHHHHHHcCCC---ChHHHHhHHHHHHHhCCHHHHHHHHHHHHhc-CCC----------
Q 007721 323 WMYQERSLYNLG----REKIVDLNYASELDPT---LSFPYKYRAVAKMEEGQIRAAISEIDRIIVF-KLS---------- 384 (591)
Q Consensus 323 ~a~~~r~~y~~~----~eA~~dl~~Ai~LdP~---~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l-~p~---------- 384 (591)
..+.-+|.|+.. ++|-..|..|.++--. .+..-.|+|.+|.+.|+- +++-++++. .|.
T Consensus 368 ~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~----ed~y~~ld~i~p~nt~s~ssq~l 443 (629)
T KOG2300|consen 368 QIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDA----EDLYKALDLIGPLNTNSLSSQRL 443 (629)
T ss_pred HHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccH----HHHHHHHHhcCCCCCCcchHHHH
Confidence 455666776533 8888888888776332 256667799999987763 344444433 342
Q ss_pred -hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccchH
Q 007721 385 -VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSL 463 (591)
Q Consensus 385 -~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al 463 (591)
...++.+|.+....+++.||.+-.++.++.. +.+-..|..+
T Consensus 444 ~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma--naed~~rL~a------------------------------------ 485 (629)
T KOG2300|consen 444 EASILYVYGLFAFKQNDLNEAKRFLRETLKMA--NAEDLNRLTA------------------------------------ 485 (629)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc--chhhHHHHHH------------------------------------
Confidence 1135678888899999999999999999887 2111111111
Q ss_pred HHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHH
Q 007721 464 AVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLV 515 (591)
Q Consensus 464 ~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~ 515 (591)
-....+|.+..-+|+..|++...+-|+.+...-+|..+
T Consensus 486 --------------~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~v 523 (629)
T KOG2300|consen 486 --------------CSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPV 523 (629)
T ss_pred --------------HHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchH
Confidence 12344788888899999999999999988866665544
No 301
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=94.50 E-value=0.1 Score=39.16 Aligned_cols=32 Identities=25% Similarity=0.242 Sum_probs=16.0
Q ss_pred HHhHHHHHHHcCCHHHHHHHHHHhhcccccHH
Q 007721 514 LVYEGWILYDTGHREEALSRAEKSISIERTFE 545 (591)
Q Consensus 514 ~~~~G~~l~~~g~~eeAl~~~e~ai~l~~~~~ 545 (591)
+++++...|++|+|++|...-+++++++|++.
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~ 35 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNR 35 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-H
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcH
Confidence 44555555555555555555555555555554
No 302
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.48 E-value=6.5 Score=40.13 Aligned_cols=99 Identities=14% Similarity=0.085 Sum_probs=63.8
Q ss_pred HHHHHHhhhHHhhhc-cHHHHHHHHHHHhhc----cccc------------hhhhhHHHHHHhCChHHHHHHHHHHHHhc
Q 007721 256 MLALHQLGCVMFERE-EYKDACYYFEAAADA----GHIY------------SLAGLARAKYKVGQQYSAYKLINSIISEH 318 (591)
Q Consensus 256 ~~a~~~lG~~~~~~g-~~~eA~~~f~~Al~~----~~~~------------a~~~la~~~~~~G~~~~A~~~~~~aI~~~ 318 (591)
...+|+.|......+ ++++|..++++|.++ +... .+..+++++...+..+.
T Consensus 35 a~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~------------ 102 (278)
T PF08631_consen 35 ARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYES------------ 102 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHH------------
Confidence 345799999999999 999999999998877 1100 12222223332222211
Q ss_pred CCCHHHHHHHHhcCCcHHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhc
Q 007721 319 KPTGWMYQERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVF 381 (591)
Q Consensus 319 ~~~g~a~~~r~~y~~~~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l 381 (591)
..+|...++.+..--|+.+..+.-.-.++...++.+++.+.+.++|.-
T Consensus 103 ---------------~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 103 ---------------VEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred ---------------HHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 144555555566666777777755555555588888888888888864
No 303
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.39 E-value=0.77 Score=46.64 Aligned_cols=124 Identities=16% Similarity=0.075 Sum_probs=90.5
Q ss_pred HhhhHHhhhccHHHHHHHHHHHhhccc--cchhhhhHHHHHHhCChHHHHHHHHHHHHhcCCCHHHH-HHH-Hhc--CCc
Q 007721 261 QLGCVMFEREEYKDACYYFEAAADAGH--IYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMY-QER-SLY--NLG 334 (591)
Q Consensus 261 ~lG~~~~~~g~~~eA~~~f~~Al~~~~--~~a~~~la~~~~~~G~~~~A~~~~~~aI~~~~~~g~a~-~~r-~~y--~~~ 334 (591)
.-+.-....+++.+|...|..++...+ ..+..++++++...|+.+.|...+.........-.+.- ..+ ... ...
T Consensus 139 ~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 139 AEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred HHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhc
Confidence 345566778899999999999988843 45788899999999999888777665443332211111 111 111 000
Q ss_pred HHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 007721 335 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS 384 (591)
Q Consensus 335 ~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~ 384 (591)
..-..++.+.+.-||++..+-+.+|..+...|++++|++.+=..++-+-+
T Consensus 219 ~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~ 268 (304)
T COG3118 219 TPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRG 268 (304)
T ss_pred CCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 12245788999999999999999999999999999999999999987764
No 304
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=94.27 E-value=0.079 Score=53.59 Aligned_cols=83 Identities=14% Similarity=-0.020 Sum_probs=52.2
Q ss_pred CHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhhchHhHHHHHHHhhhcccCchhh
Q 007721 367 QIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADC 446 (591)
Q Consensus 367 ~~~eAl~~~~~al~l~p~~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~ 446 (591)
+..||+..++.|.+ ....|+.+.|...|.-|++++|+++ .+...-+.++++-.+.-+|
T Consensus 112 ~~kEA~~Al~~A~~--------------~~~~Gk~ekA~~lfeHAlalaP~~p------~~L~e~G~f~E~~~~iv~A-- 169 (472)
T KOG3824|consen 112 KVKEAILALKAAGR--------------SRKDGKLEKAMTLFEHALALAPTNP------QILIEMGQFREMHNEIVEA-- 169 (472)
T ss_pred hhHHHHHHHHHHHH--------------HHhccchHHHHHHHHHHHhcCCCCH------HHHHHHhHHHHhhhhhHhh--
Confidence 45566655555542 3467888888888888888888874 3333334444433433344
Q ss_pred hhhhhhccccccccchHHHHHHHHHcCCCCchhHhhhHHHH
Q 007721 447 WIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLL 487 (591)
Q Consensus 447 ~~~l~~~~~~~~~~~al~~~~~al~~~P~~~~~~~~~g~~l 487 (591)
=.+|-+||.++|++.++..|++...
T Consensus 170 ----------------Dq~Y~~ALtisP~nseALvnR~RT~ 194 (472)
T KOG3824|consen 170 ----------------DQCYVKALTISPGNSEALVNRARTT 194 (472)
T ss_pred ----------------hhhhheeeeeCCCchHHHhhhhccc
Confidence 2467777777777777777776544
No 305
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.15 E-value=2 Score=42.33 Aligned_cols=176 Identities=14% Similarity=0.054 Sum_probs=105.6
Q ss_pred hHHHHHHHhCCHHHHHHHHHHHHhcCCC----hHH--HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhhchHhHH
Q 007721 357 YRAVAKMEEGQIRAAISEIDRIIVFKLS----VDC--LELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHL 430 (591)
Q Consensus 357 ~rg~~l~~l~~~~eAl~~~~~al~l~p~----~~~--~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~~~~~~ 430 (591)
.-|+.|...++++.|=..|-+|-.+... -++ -+.-+.=..+.++.++|+.++++++++--+. ..-++++.+-
T Consensus 39 ~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~~~~eAv~cL~~aieIyt~~--Grf~~aAk~~ 116 (288)
T KOG1586|consen 39 RAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKVDPEEAVNCLEKAIEIYTDM--GRFTMAAKHH 116 (288)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHhh--hHHHHHHhhh
Confidence 3367788888899998888888776431 122 2333332345569999999999999987763 1112223221
Q ss_pred ---HHHHHhhhcccCchhhhhhhhhccccccccchHHHHHHHHHcCCC------CchhHhhhHHHHHHhCCHHHHHHHHH
Q 007721 431 ---VKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPG------KSFLRFRQSLLLLRLNCQKAAMRCLR 501 (591)
Q Consensus 431 ---~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~~P~------~~~~~~~~g~~l~~l~~~~eA~~~~~ 501 (591)
....+..++++++ |+..|+++-+--.+ ....+..-+-.-..++.+..|++.|+
T Consensus 117 ~~iaEiyEsdl~d~ek------------------aI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iye 178 (288)
T KOG1586|consen 117 IEIAEIYESDLQDFEK------------------AIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYE 178 (288)
T ss_pred hhHHHHHhhhHHHHHH------------------HHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222222233333 45555555443221 11222233334455899999999999
Q ss_pred HHHhcCCchHHH-------HHhHHHHHHHcCCHHHHHHHHHHhhcccccHH----HHHHHHH
Q 007721 502 LARNHSSSEHER-------LVYEGWILYDTGHREEALSRAEKSISIERTFE----AFFLKAY 552 (591)
Q Consensus 502 ~Al~l~p~~~~a-------~~~~G~~l~~~g~~eeAl~~~e~ai~l~~~~~----~~~~~~~ 552 (591)
+..+..-++.-. +..-|+|.+-.++.=-+-...++=-+++|+|. -=|+|-.
T Consensus 179 qva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L 240 (288)
T KOG1586|consen 179 QVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDL 240 (288)
T ss_pred HHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHH
Confidence 999888776533 35567777776766555555566667899986 3455543
No 306
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=93.99 E-value=0.19 Score=49.08 Aligned_cols=55 Identities=13% Similarity=-0.004 Sum_probs=26.5
Q ss_pred hCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHHHHHHHHhhcccccH
Q 007721 490 LNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 544 (591)
Q Consensus 490 l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l~~~~ 544 (591)
-|+.+.|.+.|.+|+++.|..+.-++-+|..-.+.|+++.|.+.|++.++|+|..
T Consensus 8 ~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 8 SGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred cCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 3444444444444444444444444444444444444444444444444444443
No 307
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=93.82 E-value=0.14 Score=55.90 Aligned_cols=95 Identities=17% Similarity=0.128 Sum_probs=85.1
Q ss_pred hhccccccccc-hHHHHHHHHHcCCCCchh-HhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHH
Q 007721 451 YDRWSSVDDIG-SLAVINQMLINDPGKSFL-RFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHRE 528 (591)
Q Consensus 451 ~~~~~~~~~~~-al~~~~~al~~~P~~~~~-~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~e 528 (591)
+-.|..++... |.+++.+|+-..|-..+. ..+++.++.+-|-.-.|-..+.++++++...+--++..|..++.+.+.+
T Consensus 614 glywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~ 693 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNIS 693 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhH
Confidence 34566666666 889999999999976554 7899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccccHH
Q 007721 529 EALSRAEKSISIERTFE 545 (591)
Q Consensus 529 eAl~~~e~ai~l~~~~~ 545 (591)
+|++.+++|+.+.|+..
T Consensus 694 ~a~~~~~~a~~~~~~~~ 710 (886)
T KOG4507|consen 694 GALEAFRQALKLTTKCP 710 (886)
T ss_pred HHHHHHHHHHhcCCCCh
Confidence 99999999999999865
No 308
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.73 E-value=1.9 Score=42.68 Aligned_cols=170 Identities=16% Similarity=-0.001 Sum_probs=108.7
Q ss_pred hHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCC---Ch-H---HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhh
Q 007721 352 SFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL---SV-D---CLELRAWLFIAADDYESALRDTLALLALESNYMMFHGR 424 (591)
Q Consensus 352 ~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p---~~-~---~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~ 424 (591)
+..|..-++++..-++++.|-..+.+|++-.- ++ . ++..-+.+..++..+.|+...|++|..+--.. |+
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~----Gs 106 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVEC----GS 106 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh----CC
Confidence 45677778889999999999999999994422 21 2 23345678899999999999999999875332 11
Q ss_pred chHhHHHHHHHhhhcccCchhhhhhhhhccccccccchHHHHHHHHHcCCCCc------hhHhhhHHHHHHhCCHHHHHH
Q 007721 425 VSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKS------FLRFRQSLLLLRLNCQKAAMR 498 (591)
Q Consensus 425 ~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~~P~~~------~~~~~~g~~l~~l~~~~eA~~ 498 (591)
.. +.|.++-.....+.+++--.|+..|.|++++=-... +++-..|.+|.++++++||-.
T Consensus 107 pd---------------tAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~ 171 (308)
T KOG1585|consen 107 PD---------------TAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAAT 171 (308)
T ss_pred cc---------------hHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHH
Confidence 11 112222233333344444446777887777644443 345567888999999999877
Q ss_pred HHHHHHh----cCCchHHHHHhHHHHHHHc--CCHHHHHHHHHHhhcc
Q 007721 499 CLRLARN----HSSSEHERLVYEGWILYDT--GHREEALSRAEKSISI 540 (591)
Q Consensus 499 ~~~~Al~----l~p~~~~a~~~~G~~l~~~--g~~eeAl~~~e~ai~l 540 (591)
.+.+-.. ...-+.----+.|.++..+ .+|..|-..|+....|
T Consensus 172 a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qi 219 (308)
T KOG1585|consen 172 AFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQI 219 (308)
T ss_pred HHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcC
Confidence 7665433 2222221122445554444 5999999999886665
No 309
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=93.64 E-value=0.11 Score=50.77 Aligned_cols=58 Identities=14% Similarity=0.070 Sum_probs=40.1
Q ss_pred HHHHhCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc
Q 007721 361 AKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNY 418 (591)
Q Consensus 361 ~l~~l~~~~eAl~~~~~al~l~p~-~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~ 418 (591)
.+.+.++.+.|.+.|++|+++.|. ...|+-.|.-..+.|+++.|.+.|++.++++|.+
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 344556777777777777777775 4556666666777777777777777777777765
No 310
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=93.61 E-value=1.1 Score=46.93 Aligned_cols=28 Identities=11% Similarity=0.052 Sum_probs=22.0
Q ss_pred HhhhHHHHHHhCCHHHHHHHHHHHHhcC
Q 007721 480 RFRQSLLLLRLNCQKAAMRCLRLARNHS 507 (591)
Q Consensus 480 ~~~~g~~l~~l~~~~eA~~~~~~Al~l~ 507 (591)
+.+....+...|..|-|+..++..++++
T Consensus 157 ~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 157 FLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 5566666777888888888888888877
No 311
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=93.42 E-value=0.82 Score=44.04 Aligned_cols=82 Identities=20% Similarity=0.130 Sum_probs=65.2
Q ss_pred hhhhccccccccchHHHHHHHHHcC-CCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCch----HHHHHhHHHHHHH
Q 007721 449 KLYDRWSSVDDIGSLAVINQMLIND-PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE----HERLVYEGWILYD 523 (591)
Q Consensus 449 ~l~~~~~~~~~~~al~~~~~al~~~-P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~----~~a~~~~G~~l~~ 523 (591)
-+|..|++.+|..|+..|-++-... -..+++.+.+|..+. ..+++.|+..+-+++++.+.+ ++.+..++.+++.
T Consensus 112 llYy~Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~ 190 (203)
T PF11207_consen 112 LLYYHWSRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQK 190 (203)
T ss_pred HHHHHhhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 5788899988888887776543321 246677777777666 566777999999999998765 9999999999999
Q ss_pred cCCHHHHH
Q 007721 524 TGHREEAL 531 (591)
Q Consensus 524 ~g~~eeAl 531 (591)
+|++++|.
T Consensus 191 ~~~~e~AY 198 (203)
T PF11207_consen 191 LKNYEQAY 198 (203)
T ss_pred hcchhhhh
Confidence 99999985
No 312
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.40 E-value=16 Score=43.26 Aligned_cols=185 Identities=16% Similarity=0.080 Sum_probs=123.8
Q ss_pred ChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcc----hhhhhh
Q 007721 351 LSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLAL--ESNY----MMFHGR 424 (591)
Q Consensus 351 ~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~~~~~~~r~~~~~~~g~~~~A~~d~~~al~l--~P~~----~~~~~~ 424 (591)
-+..|..+|.+.++.|+..+||+.|=||= +|+ .|..--.+-.+.|.|++-++.+.-|.+- .|.- +.++.+
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyikad--Dps--~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAk 1178 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKAD--DPS--NYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAK 1178 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhcC--CcH--HHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHH
Confidence 46889999999999999999999998875 553 3344445667889999999998887762 2321 111111
Q ss_pred chHhHHHHHHHhhhcccCchhhhhhhhhccccccccchHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHH
Q 007721 425 VSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLAR 504 (591)
Q Consensus 425 ~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al 504 (591)
...++.++...--..-|+ .-+++|+.-.-.-++|...+.-.++ -|-.++..|..+|.++.|....|+|-
T Consensus 1179 ---t~rl~elE~fi~gpN~A~-i~~vGdrcf~~~~y~aAkl~y~~vS-------N~a~La~TLV~LgeyQ~AVD~aRKAn 1247 (1666)
T KOG0985|consen 1179 ---TNRLTELEEFIAGPNVAN-IQQVGDRCFEEKMYEAAKLLYSNVS-------NFAKLASTLVYLGEYQGAVDAARKAN 1247 (1666)
T ss_pred ---hchHHHHHHHhcCCCchh-HHHHhHHHhhhhhhHHHHHHHHHhh-------hHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 122333334444444443 2456666555555555554444443 48889999999999999999998885
Q ss_pred hcCC-------------------------chHHHHHhHHHHHHHcCCHHHHHHHHHHhhcccccHHHHHHH
Q 007721 505 NHSS-------------------------SEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLK 550 (591)
Q Consensus 505 ~l~p-------------------------~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l~~~~~~~~~~ 550 (591)
.... -+++-+--+-..+.+-|.|+|=+...|-++.+.|---.+|-.
T Consensus 1248 s~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTE 1318 (1666)
T KOG0985|consen 1248 STKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTE 1318 (1666)
T ss_pred chhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHH
Confidence 3321 023333344444566799999999999999999987766543
No 313
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=93.37 E-value=3.4 Score=42.17 Aligned_cols=144 Identities=13% Similarity=-0.030 Sum_probs=93.9
Q ss_pred cHHHHHHHHHHHhhccccchhhhhHHHHHH----hCChHHHHHHHHHHHHhcCCCH--------HHHHHHH----hcCCc
Q 007721 271 EYKDACYYFEAAADAGHIYSLAGLARAKYK----VGQQYSAYKLINSIISEHKPTG--------WMYQERS----LYNLG 334 (591)
Q Consensus 271 ~~~eA~~~f~~Al~~~~~~a~~~la~~~~~----~G~~~~A~~~~~~aI~~~~~~g--------~a~~~r~----~y~~~ 334 (591)
+..+|..+|+.+.+.++..+...+|..+.. ..+..+|..+|.++.......+ .+|.... .....
T Consensus 92 ~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~ 171 (292)
T COG0790 92 DKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDD 171 (292)
T ss_pred cHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHH
Confidence 356666666666666665565666655443 2255666666666665543322 2222210 00011
Q ss_pred HHHHHHHHHHHHcCCCChHHHHhHHHHHHH----hCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcC-----------
Q 007721 335 REKIVDLNYASELDPTLSFPYKYRAVAKME----EGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAAD----------- 399 (591)
Q Consensus 335 ~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~----l~~~~eAl~~~~~al~l~p~~~~~~~r~~~~~~~g----------- 399 (591)
..|..-|.+|-... +..+..++|..|.. ..++++|+.-|.+|-+... ....++.+ ++...|
T Consensus 172 ~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~-~~a~~~~~-~~~~~g~g~~~~~~~~~ 247 (292)
T COG0790 172 KKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD-GAACYNLG-LMYLNGEGVKKAAFLTA 247 (292)
T ss_pred HhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC-HHHHHHHH-HHHhcCCCchhhhhccc
Confidence 35777788877776 78889999988755 4588999999999998777 55566666 555444
Q ss_pred ----CHHHHHHHHHHHHhcCCcc
Q 007721 400 ----DYESALRDTLALLALESNY 418 (591)
Q Consensus 400 ----~~~~A~~d~~~al~l~P~~ 418 (591)
+...|...++++....+..
T Consensus 248 ~~~~~~~~a~~~~~~~~~~~~~~ 270 (292)
T COG0790 248 AKEEDKKQALEWLQKACELGFDN 270 (292)
T ss_pred ccCCCHHHHHHHHHHHHHcCChh
Confidence 8899999999999888765
No 314
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=93.35 E-value=0.31 Score=53.33 Aligned_cols=121 Identities=15% Similarity=0.069 Sum_probs=97.0
Q ss_pred HHHHHhcCCChHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhc
Q 007721 375 IDRIIVFKLSVDCLELRA-WLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDR 453 (591)
Q Consensus 375 ~~~al~l~p~~~~~~~r~-~~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~ 453 (591)
+-.+++-+|....+++.+ .-....|+.-+|+.++..++-+.|+. +
T Consensus 202 ~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h-------------------------~--------- 247 (886)
T KOG4507|consen 202 IHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRH-------------------------N--------- 247 (886)
T ss_pred HHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcc-------------------------c---------
Confidence 344555566544444444 45677899999999999999988875 1
Q ss_pred cccccccchHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHHHHH
Q 007721 454 WSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSR 533 (591)
Q Consensus 454 ~~~~~~~~al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~ 533 (591)
. -..+..+|.+|.|+|+--+|--++..|+...|.-++-+|.+|.++..+|.+--.+..
T Consensus 248 ----k------------------di~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~l~~i~aml~~~N~S~~~ 305 (886)
T KOG4507|consen 248 ----K------------------DIALLSLATVLHRAGFSADAAVILHAALDDADFFTSNYYTLGNIYAMLGEYNHSVLC 305 (886)
T ss_pred ----c------------------cchhhhHHHHHHHcccccchhheeehhccCCccccccceeHHHHHHHHhhhhhhhhh
Confidence 1 123556889999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccccHH-HHHHHH
Q 007721 534 AEKSISIERTFE-AFFLKA 551 (591)
Q Consensus 534 ~e~ai~l~~~~~-~~~~~~ 551 (591)
|..|....|+|+ +|=-|+
T Consensus 306 ydha~k~~p~f~q~~~q~~ 324 (886)
T KOG4507|consen 306 YDHALQARPGFEQAIKQRK 324 (886)
T ss_pred hhhhhccCcchhHHHHHHH
Confidence 999999999999 654433
No 315
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=93.34 E-value=1.2 Score=49.02 Aligned_cols=54 Identities=13% Similarity=-0.070 Sum_probs=39.9
Q ss_pred HHHHHcCCCCchhHhhh------HHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHH
Q 007721 467 NQMLINDPGKSFLRFRQ------SLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILY 522 (591)
Q Consensus 467 ~~al~~~P~~~~~~~~~------g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~ 522 (591)
+.+.+..|.+....+-+ |..+..+|+.+++.....++.++.|.+++ +..||+-.
T Consensus 126 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~--~~~~~~~~ 185 (620)
T COG3914 126 EIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPR--VLGALMTA 185 (620)
T ss_pred HHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhh--hHhHHHHH
Confidence 34566666666665555 88888999999999999999999999954 44555443
No 316
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=93.26 E-value=1.1 Score=46.24 Aligned_cols=128 Identities=17% Similarity=0.096 Sum_probs=85.4
Q ss_pred CHHHHHHHHHHHHhcC-CChHHHHH-HHHH-----HHHcCCHHHHHHHHHHHHhcCCcchhhhhhchHhHHHHHHHhhhc
Q 007721 367 QIRAAISEIDRIIVFK-LSVDCLEL-RAWL-----FIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVR 439 (591)
Q Consensus 367 ~~~eAl~~~~~al~l~-p~~~~~~~-r~~~-----~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~ 439 (591)
-+++++.-++||+... |.|..+.. .+.+ .-..-||..-...|+....+.|+-..-.+|.-+.....
T Consensus 271 lI~eg~all~rA~~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSPvV~LNRAVAla~~~------- 343 (415)
T COG4941 271 LIDEGLALLDRALASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSPVVTLNRAVALAMRE------- 343 (415)
T ss_pred HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCCeEeehHHHHHHHhh-------
Confidence 3678888888988775 34322111 1111 34556888889999999999998654444443333221
Q ss_pred ccCchhhhhhhhhccccccccchHHHHHHHHHc--CCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhH
Q 007721 440 SWSPADCWIKLYDRWSSVDDIGSLAVINQMLIN--DPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYE 517 (591)
Q Consensus 440 ~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~--~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~ 517 (591)
+-..+|+.++..++- =-+.-.+|--+|.+|.++|+.+||-..|++|+.+.++.+++.+-+
T Consensus 344 ------------------Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~ 405 (415)
T COG4941 344 ------------------GPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLR 405 (415)
T ss_pred ------------------hHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHH
Confidence 111135555544443 234445677899999999999999999999999999999987655
Q ss_pred HH
Q 007721 518 GW 519 (591)
Q Consensus 518 G~ 519 (591)
+-
T Consensus 406 ~r 407 (415)
T COG4941 406 QR 407 (415)
T ss_pred HH
Confidence 43
No 317
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=92.97 E-value=2.8 Score=43.88 Aligned_cols=190 Identities=17% Similarity=0.138 Sum_probs=112.2
Q ss_pred HHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 007721 337 KIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALES 416 (591)
Q Consensus 337 A~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P 416 (591)
....|++.++-+|.+..+|..+....-.+-....-. ....++. .+..+.-|++|++-+|
T Consensus 4 r~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~--------------~~~~~a~-------~E~klsilerAL~~np 62 (321)
T PF08424_consen 4 RTAELNRRVRENPHDIEAWLELIEFQDELFRLQSSS--------------KAERRAL-------AERKLSILERALKHNP 62 (321)
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHhccccccc--------------hhhHHHH-------HHHHHHHHHHHHHhCC
Confidence 356788888888888888887766554432211111 0011111 3556677888888899
Q ss_pred cchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccchHHHHHHHHHcCCCCchhHhhhHHHHHHhC-----
Q 007721 417 NYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLN----- 491 (591)
Q Consensus 417 ~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~~P~~~~~~~~~g~~l~~l~----- 491 (591)
+. ..-+++.+....+.|+.-. + ..-.++++..+|++..+| ++.+-..++
T Consensus 63 ~~--------~~L~l~~l~~~~~~~~~~~----l------------~~~we~~l~~~~~~~~LW--~~yL~~~q~~~~~f 116 (321)
T PF08424_consen 63 DS--------ERLLLGYLEEGEKVWDSEK----L------------AKKWEELLFKNPGSPELW--REYLDFRQSNFASF 116 (321)
T ss_pred CC--------HHHHHHHHHHHHHhCCHHH----H------------HHHHHHHHHHCCCChHHH--HHHHHHHHHHhccC
Confidence 76 2333334444444443331 1 336899999999999998 555666665
Q ss_pred CHHHHHHHHHHHHhcCCch------------------HHHHHhHHHHHHHcCCHHHHHHHHHHhhcccccHHHHHHHHHH
Q 007721 492 CQKAAMRCLRLARNHSSSE------------------HERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYI 553 (591)
Q Consensus 492 ~~~eA~~~~~~Al~l~p~~------------------~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l~~~~~~~~~~~~~ 553 (591)
.++.-...|.++++.-..- .+.+..+..-+.+.|+.|.|++.+.-.++++= |
T Consensus 117 ~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~-----~----- 186 (321)
T PF08424_consen 117 TVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF-----F----- 186 (321)
T ss_pred cHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc-----C-----
Confidence 3556666666666443221 23334455557788999999999988887641 1
Q ss_pred hhhcCCCCCchhHHHHHHHHHhcCCCCCccccc
Q 007721 554 LADTNLDPESSTYVIQLLEEALRCPSDGLRKGQ 586 (591)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (591)
.-.+++....+..+..+|+=-- |+..|-|+
T Consensus 187 -~P~~~~~~~~~~~~~~fe~FWe--S~vpRiGE 216 (321)
T PF08424_consen 187 -RPESLSSSSFSERLESFEEFWE--SEVPRIGE 216 (321)
T ss_pred -CccccccccHHHHHHHHHHHhC--cCCCCCCC
Confidence 1123333333366666665443 35555554
No 318
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=92.72 E-value=0.36 Score=48.55 Aligned_cols=58 Identities=17% Similarity=0.265 Sum_probs=48.8
Q ss_pred HHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHH
Q 007721 463 LAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWI 520 (591)
Q Consensus 463 l~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~ 520 (591)
+.+.+|.|.++|.++.-+--+|.++.++||++-|+.++...+++-|+++++-.-++..
T Consensus 201 l~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l 258 (269)
T COG2912 201 LRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQL 258 (269)
T ss_pred HHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence 7788888999999988888899999999998889999998889999888876655543
No 319
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=92.63 E-value=2.6 Score=46.56 Aligned_cols=91 Identities=19% Similarity=0.017 Sum_probs=79.2
Q ss_pred chHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHH-HHhcCCchHHHHHhH------HHHHHHcCCHHHHHHH
Q 007721 461 GSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRL-ARNHSSSEHERLVYE------GWILYDTGHREEALSR 533 (591)
Q Consensus 461 ~al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~-Al~l~p~~~~a~~~~------G~~l~~~g~~eeAl~~ 533 (591)
.+....+.++..+|.+..++.++|.++...|....+...... |.+..|++.+.+..+ |..+-.+|+-+++...
T Consensus 85 ~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 164 (620)
T COG3914 85 LAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELA 164 (620)
T ss_pred hHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHH
Confidence 356788999999999999999999999999888877777666 999999999999999 9999999999999999
Q ss_pred HHHhhcccccHHHHHHHHH
Q 007721 534 AEKSISIERTFEAFFLKAY 552 (591)
Q Consensus 534 ~e~ai~l~~~~~~~~~~~~ 552 (591)
.+++..+.|.+ .-.+.+.
T Consensus 165 l~~~~d~~p~~-~~~~~~~ 182 (620)
T COG3914 165 LERAVDLLPKY-PRVLGAL 182 (620)
T ss_pred HHHHHHhhhhh-hhhHhHH
Confidence 99999999988 3333333
No 320
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=92.55 E-value=0.15 Score=31.99 Aligned_cols=25 Identities=16% Similarity=0.105 Sum_probs=17.3
Q ss_pred HHHHhHHHHHHHcCCHHHHHHHHHH
Q 007721 512 ERLVYEGWILYDTGHREEALSRAEK 536 (591)
Q Consensus 512 ~a~~~~G~~l~~~g~~eeAl~~~e~ 536 (591)
.+++++|++++.+|+.++|.+.+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 4566777777777777777766653
No 321
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.47 E-value=3.3 Score=38.47 Aligned_cols=70 Identities=17% Similarity=0.129 Sum_probs=58.3
Q ss_pred HHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHHHHHH
Q 007721 463 LAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRA 534 (591)
Q Consensus 463 l~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~~ 534 (591)
...++..-.+.|+.+++-.--|.++...|++.+|++.++.+-+-.|..+.+---+++||+.+|+. .|+.|
T Consensus 30 e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~--~Wr~~ 99 (160)
T PF09613_consen 30 EALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP--SWRRY 99 (160)
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh--HHHHH
Confidence 55677777888999998888888999999999999999998888888888888888888888875 46655
No 322
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.42 E-value=0.89 Score=48.98 Aligned_cols=137 Identities=17% Similarity=0.179 Sum_probs=95.1
Q ss_pred HHhHHHHHHHhCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHH-HhcCCcchhhhhhchHhHHHH
Q 007721 355 YKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLAL-LALESNYMMFHGRVSGDHLVK 432 (591)
Q Consensus 355 y~~rg~~l~~l~~~~eAl~~~~~al~l~p~-~~~~~~r~~~~~~~g~~~~A~~d~~~a-l~l~P~~~~~~~~~~~~~~~~ 432 (591)
|.-|+. ..+.+...+.-....+.-+.-+ +..+.+....+...|++..|.+.+... ++-.|..
T Consensus 211 ykVr~l--lq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~-------------- 274 (696)
T KOG2471|consen 211 YKVRFL--LQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGG-------------- 274 (696)
T ss_pred hhHHHH--HHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCc--------------
Confidence 333444 5556677777777777766554 566666777777888877777654322 1111111
Q ss_pred HHHhhhcccCchhhhhhhhhccccccccchHHHHHHHHHcCCC--CchhHhhhHHHHHHhCCHHHHHHHHHHHHh-----
Q 007721 433 LLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPG--KSFLRFRQSLLLLRLNCQKAAMRCLRLARN----- 505 (591)
Q Consensus 433 ~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~~P~--~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~----- 505 (591)
-+.|. .-.+|+|+|-++.++|++..+.-.|.+|++
T Consensus 275 --------------------------------------~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~q 316 (696)
T KOG2471|consen 275 --------------------------------------TITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQ 316 (696)
T ss_pred --------------------------------------cccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHH
Confidence 01111 234688999999999999999999999996
Q ss_pred ----cC---------CchHHHHHhHHHHHHHcCCHHHHHHHHHHhhcccccHH
Q 007721 506 ----HS---------SSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE 545 (591)
Q Consensus 506 ----l~---------p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l~~~~~ 545 (591)
+. ...-+.+||.|..++..|+--+|.+++-+|...=....
T Consensus 317 L~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nP 369 (696)
T KOG2471|consen 317 LRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNP 369 (696)
T ss_pred HhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCc
Confidence 12 23678999999999999999999999999988744333
No 323
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=92.05 E-value=0.52 Score=39.71 Aligned_cols=58 Identities=24% Similarity=0.172 Sum_probs=45.1
Q ss_pred HHhCCHHHHHHHHHHHHhcCCc---------hHHHHHhHHHHHHHcCCHHHHHHHHHHhhcccccHH
Q 007721 488 LRLNCQKAAMRCLRLARNHSSS---------EHERLVYEGWILYDTGHREEALSRAEKSISIERTFE 545 (591)
Q Consensus 488 ~~l~~~~eA~~~~~~Al~l~p~---------~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l~~~~~ 545 (591)
.+.|++.+|++.+.+.+..... ...++.++|.+.+..|++++|+..+++|+++-+...
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~ 75 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENG 75 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHC
Confidence 5678888887777777655433 357788999999999999999999999999855443
No 324
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=92.05 E-value=0.26 Score=33.95 Aligned_cols=29 Identities=14% Similarity=0.147 Sum_probs=20.0
Q ss_pred HHHHhHHHHHHHhCCHHHHHHHHHHHHhc
Q 007721 353 FPYKYRAVAKMEEGQIRAAISEIDRIIVF 381 (591)
Q Consensus 353 ~ay~~rg~~l~~l~~~~eAl~~~~~al~l 381 (591)
.++.++|.+|..+|++++|+..+.+++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 45677777777777777777777777754
No 325
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=92.04 E-value=0.56 Score=47.19 Aligned_cols=63 Identities=16% Similarity=0.135 Sum_probs=51.9
Q ss_pred HhHHHHHHHhCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc
Q 007721 356 KYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNY 418 (591)
Q Consensus 356 ~~rg~~l~~l~~~~eAl~~~~~al~l~p~-~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~ 418 (591)
.++=.++++.++.+.|....++.|.++|+ +..+.-||.+|.++|-+..|+.|+...++.-|+.
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~ 248 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDD 248 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCc
Confidence 44556788888888888888888888884 6666778888888888888888888888888876
No 326
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=92.04 E-value=0.26 Score=34.22 Aligned_cols=30 Identities=13% Similarity=0.254 Sum_probs=21.9
Q ss_pred HHHHhHHHHHHHhCCHHHHHHHHHHHHhcC
Q 007721 353 FPYKYRAVAKMEEGQIRAAISEIDRIIVFK 382 (591)
Q Consensus 353 ~ay~~rg~~l~~l~~~~eAl~~~~~al~l~ 382 (591)
+.|..+|.+-++.++|++|+.+|.++|++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 456777777777777777777777777653
No 327
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=91.99 E-value=27 Score=39.95 Aligned_cols=280 Identities=18% Similarity=0.120 Sum_probs=170.7
Q ss_pred cchhhhHHHHHHHHhhhHHh-hhccHHHHHHHHHHHhhcc--cc------chhhhhHHHHHHhCChHHHHHHHHHHHHhc
Q 007721 248 CSTERWQRMLALHQLGCVMF-EREEYKDACYYFEAAADAG--HI------YSLAGLARAKYKVGQQYSAYKLINSIISEH 318 (591)
Q Consensus 248 ~~~~~~~~~~a~~~lG~~~~-~~g~~~eA~~~f~~Al~~~--~~------~a~~~la~~~~~~G~~~~A~~~~~~aI~~~ 318 (591)
+...+.+.+.....+|.+++ +..++++|+.+.++++.+. +. .+..-+++++.+.+... |....++.|+..
T Consensus 51 ~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~ 129 (608)
T PF10345_consen 51 FKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDS 129 (608)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHH
Confidence 33444556777888998877 7899999999999998873 21 12334678888888877 999999999875
Q ss_pred CC---CHHHHHHHHh-------cCCcHHHHHHHHHHHHcC--CCChHHHH----hHHHHHHHhCCHHHHHHHHHHHHhc-
Q 007721 319 KP---TGWMYQERSL-------YNLGREKIVDLNYASELD--PTLSFPYK----YRAVAKMEEGQIRAAISEIDRIIVF- 381 (591)
Q Consensus 319 ~~---~g~a~~~r~~-------y~~~~eA~~dl~~Ai~Ld--P~~~~ay~----~rg~~l~~l~~~~eAl~~~~~al~l- 381 (591)
.+ .+|.|.-|-. .+....|+..+++...+. +.+...+. ..|.+....+..+++++..++++..
T Consensus 130 ~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~ 209 (608)
T PF10345_consen 130 ETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQA 209 (608)
T ss_pred hccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH
Confidence 43 5666654421 123366888888877776 34443333 3577777788888999999888442
Q ss_pred -----CCC-----hHHHHH--HHHHHHHcCCHHHHHHHHH---HHHh---cCC-------cc-----------------h
Q 007721 382 -----KLS-----VDCLEL--RAWLFIAADDYESALRDTL---ALLA---LES-------NY-----------------M 419 (591)
Q Consensus 382 -----~p~-----~~~~~~--r~~~~~~~g~~~~A~~d~~---~al~---l~P-------~~-----------------~ 419 (591)
+|+ ...+.. .-.+....|+++.+....+ +.+. -.| +. .
T Consensus 210 ~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~ 289 (608)
T PF10345_consen 210 RSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPL 289 (608)
T ss_pred hhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCcee
Confidence 332 122222 3356788888666554433 2222 122 10 0
Q ss_pred --hhhhhchHhHH---HHHHH--------hhhcccCchhhhhhhhhccccccccchHHHHHHHH---------------H
Q 007721 420 --MFHGRVSGDHL---VKLLN--------HHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQML---------------I 471 (591)
Q Consensus 420 --~~~~~~~~~~~---~~~l~--------~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al---------------~ 471 (591)
.+.+......+ ..-+- ...+.++++ +..+++.+ +
T Consensus 290 ~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~------------------l~~i~~~~~~~~~~~~~sl~~~~~ 351 (608)
T PF10345_consen 290 VFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKA------------------LKQIEKLKIKSPSAPSESLSEASE 351 (608)
T ss_pred EEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHH------------------HHHHHHhhccCCCCCCcCHHHHHH
Confidence 01111111111 11111 111112222 22233322 1
Q ss_pred cCCC----CchhHhhhHHHHHHhCCHHHHHHHHHHHHhcC---C------chHHHHHhHHHHHHHcCCHHHHHHHHH---
Q 007721 472 NDPG----KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHS---S------SEHERLVYEGWILYDTGHREEALSRAE--- 535 (591)
Q Consensus 472 ~~P~----~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~---p------~~~~a~~~~G~~l~~~g~~eeAl~~~e--- 535 (591)
..++ .-...+.++....-+|++..|......+.... | -.+..++-.|+..-..|+.+.|...|.
T Consensus 352 ~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~ 431 (608)
T PF10345_consen 352 RIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPR 431 (608)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhH
Confidence 1111 11235566677777999988988888777653 2 358889999999999999999999997
Q ss_pred -----HhhcccccHHH
Q 007721 536 -----KSISIERTFEA 546 (591)
Q Consensus 536 -----~ai~l~~~~~~ 546 (591)
.+....+..|-
T Consensus 432 ~~~~~~~~~~~~~~El 447 (608)
T PF10345_consen 432 FLLCEAANRKSKFREL 447 (608)
T ss_pred HhhhhhhccCCcchHH
Confidence 66677777773
No 328
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=91.96 E-value=0.95 Score=39.29 Aligned_cols=28 Identities=25% Similarity=0.455 Sum_probs=19.8
Q ss_pred HHHHHHhCChHHHHHHHHHHHHhcCCCH
Q 007721 295 ARAKYKVGQQYSAYKLINSIISEHKPTG 322 (591)
Q Consensus 295 a~~~~~~G~~~~A~~~~~~aI~~~~~~g 322 (591)
+..++..|++-.|++.++..|..+++..
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~~~~ 30 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHGEDE 30 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHccCCC
Confidence 4456777888888888888877776543
No 329
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.61 E-value=1.3 Score=41.19 Aligned_cols=63 Identities=21% Similarity=0.203 Sum_probs=56.4
Q ss_pred hHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHHHHHHHHhhcccccHH
Q 007721 483 QSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE 545 (591)
Q Consensus 483 ~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l~~~~~ 545 (591)
...+=.+.+..+++...++...-+.|..++.....||++...|++++|+..++...+-.|.+.
T Consensus 16 ~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p 78 (160)
T PF09613_consen 16 VLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFP 78 (160)
T ss_pred HHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCh
Confidence 333445567999999999999999999999999999999999999999999999988888776
No 330
>KOG1778 consensus CREB binding protein/P300 and related TAZ Zn-finger proteins [Transcription]
Probab=91.52 E-value=0.14 Score=52.85 Aligned_cols=139 Identities=14% Similarity=0.114 Sum_probs=111.5
Q ss_pred eEEEEcCeEEEhhHHHHhhcCHHHHHhhcCCCCCCCCceeEecCCCCCHHHHHHHHHHHhcCCCCCCCh--hHHHHHHHH
Q 007721 57 VTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCP--GIVLELLSF 134 (591)
Q Consensus 57 V~f~v~g~~~~aHr~iLaa~S~yF~amf~~~~~Es~~~~I~l~~~~vs~~~~~~ll~ylYtg~~~~~~~--~~v~~lL~~ 134 (591)
++...+...+++|+.+|...|+.|..+....-.-+....+.+ -+++...+..+..++|.. ++ --+ .....++.+
T Consensus 29 ~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~c~~~~~~~~~l~~~-~e-k~e~~~~~ihll~~ 104 (319)
T KOG1778|consen 29 EIVTDVKDLIPAHSLVLGPASPVFKKVLKQPCRKSLVKGNKI--LGVPCKAVNVFIRFLYSS-LE-KHEMVFFDIHLLAL 104 (319)
T ss_pred hhhhhhhhhhHHHHhcccccchHHHHHHhhhcchhhhhccee--ecccccccchhhhhhccc-hh-hhHHHHHHHHHHhh
Confidence 445556678999999999999999888766633333345666 788899999999999987 54 222 345667777
Q ss_pred HhhhChHHHHHHHHHHHHh-hcCCHHhHHHHHHHHHHhChHHHHHHHHHHHHhhhHhhhCCcccccc
Q 007721 135 ANRFCCEEMKSACDAHLAS-LVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVMKI 200 (591)
Q Consensus 135 A~~~~i~~L~~~C~~~L~~-~i~~~~n~~~ll~~A~~~~~~~L~~~c~~~i~~n~~~v~~~~~f~~l 200 (591)
...+.++.++..|+..+.. .++ ..|++..+..+..+..+.|..++...+...|..+..++.....
T Consensus 105 ~~~~~v~~~~~d~~~~~~~~~~~-~r~~flvl~~~~~~~~~~lr~a~hss~~~~~~~H~~t~~~~~~ 170 (319)
T KOG1778|consen 105 SHVYVVPQPKADCDPILECGLFD-KRNVFLVLQLAEHCDFSDLRRAKHSSIMLLFDLHLQTEKWFAY 170 (319)
T ss_pred hhhhhccCccccCCccccchhhh-hHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcccCceee
Confidence 7889999999999999988 555 7999999999999999999999999999999988876655443
No 331
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=91.40 E-value=1.6 Score=38.58 Aligned_cols=96 Identities=17% Similarity=0.113 Sum_probs=69.5
Q ss_pred ceEEE-EcCeEEEhhHHHHhhcCHHHHHhhcCCCCCCCCceeEecCCCCCHHHHHHHHHHHhcCCCC--C----------
Q 007721 56 SVTFC-VRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVD--L---------- 122 (591)
Q Consensus 56 ~V~f~-v~g~~~~aHr~iLaa~S~yF~amf~~~~~Es~~~~I~l~~~~vs~~~~~~ll~ylYtg~~~--~---------- 122 (591)
.|.+. ++|+.|...+. +|-+|--.+.|+... .+.. -.|.. +.|...+|+.+++|+-..+-. .
T Consensus 3 ~i~l~s~dge~F~vd~~-iAerSiLikN~l~d~-~~~n-~p~p~--pnVrSsvl~kv~ew~ehh~~s~sede~d~~~rks 77 (158)
T COG5201 3 MIELESIDGEIFRVDEN-IAERSILIKNMLCDS-TACN-YPIPA--PNVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKS 77 (158)
T ss_pred ceEEEecCCcEEEehHH-HHHHHHHHHHHhccc-cccC-CCCcc--cchhHHHHHHHHHHHHhccccCCCccChHhhhcc
Confidence 34444 46778887765 467777778877532 2221 13445 899999999999999753221 1
Q ss_pred ------------CChhHHHHHHHHHhhhChHHHHHHHHHHHHhhcC
Q 007721 123 ------------FCPGIVLELLSFANRFCCEEMKSACDAHLASLVG 156 (591)
Q Consensus 123 ------------~~~~~v~~lL~~A~~~~i~~L~~~C~~~L~~~i~ 156 (591)
++.++++++.-+||++.++.|.+.|+..+...+.
T Consensus 78 ~p~D~wdr~Fm~vDqemL~eI~laaNYL~ikpLLd~gCKivaemir 123 (158)
T COG5201 78 KPSDFWDRFFMEVDQEMLLEICLAANYLEIKPLLDLGCKIVAEMIR 123 (158)
T ss_pred CCccHHHHHHHHhhHHHHHHHHHhhccccchHHHHHHHHHHHHHHc
Confidence 2346788999999999999999999999999887
No 332
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.35 E-value=9 Score=40.79 Aligned_cols=142 Identities=14% Similarity=0.156 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCC--HHHHHHHHHHHHhcCC-ChHHHHHHHHHH-HHcCC---HHHHHHH
Q 007721 335 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQ--IRAAISEIDRIIVFKL-SVDCLELRAWLF-IAADD---YESALRD 407 (591)
Q Consensus 335 ~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~--~~eAl~~~~~al~l~p-~~~~~~~r~~~~-~~~g~---~~~A~~d 407 (591)
++-+.....+++.+|+...+|+.|.-++...+. +..=+...++++++|| +..+|..|-++. ..... ..+=+..
T Consensus 92 d~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~f 171 (421)
T KOG0529|consen 92 DEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEF 171 (421)
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHH
Confidence 455666778899999999999999999887654 5777888899999999 578887765543 33333 5666777
Q ss_pred HHHHHhcCCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccc-hHHHHHHHHHcCCCCchhHhhhHHH
Q 007721 408 TLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIG-SLAVINQMLINDPGKSFLRFRQSLL 486 (591)
Q Consensus 408 ~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~-al~~~~~al~~~P~~~~~~~~~g~~ 486 (591)
.+++|.-++.+ =.+.+-+..+......-++-. ..+.. .-+. -+.....|+--||.+.-+||..=.+
T Consensus 172 tt~~I~~nfSN------YsaWhyRs~lL~~l~~~~~~g---~~~~~----~~l~sEle~v~saiFTdp~DqS~WfY~rWL 238 (421)
T KOG0529|consen 172 TTKLINDNFSN------YSAWHYRSLLLSTLHPKEADG---NFMPK----ELLQSELEMVHSAIFTDPEDQSCWFYHRWL 238 (421)
T ss_pred HHHHHhccchh------hhHHHHHHHHHHHhccccccC---ccCCH----HHHHHHHHHHHHHHhcCccccceeeehHHh
Confidence 77888777755 334444444433222211110 00000 0011 2558899999999999999985444
Q ss_pred HHH
Q 007721 487 LLR 489 (591)
Q Consensus 487 l~~ 489 (591)
+.+
T Consensus 239 l~~ 241 (421)
T KOG0529|consen 239 LGR 241 (421)
T ss_pred hcc
Confidence 444
No 333
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=91.22 E-value=0.61 Score=37.83 Aligned_cols=65 Identities=20% Similarity=0.268 Sum_probs=54.4
Q ss_pred hHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHH---HHHcCCHHHHHHHHHHhhccccc
Q 007721 479 LRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWI---LYDTGHREEALSRAEKSISIERT 543 (591)
Q Consensus 479 ~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~---l~~~g~~eeAl~~~e~ai~l~~~ 543 (591)
-+..+|+=|...+..++|+...++|++..++..+.+..+|++ +.+.|+|++.++..-+=+.+...
T Consensus 8 ~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~e 75 (80)
T PF10579_consen 8 QQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEE 75 (80)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677778889999999999999999999999999888875 78889999999877776665443
No 334
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=91.16 E-value=11 Score=40.19 Aligned_cols=157 Identities=15% Similarity=0.062 Sum_probs=103.0
Q ss_pred HHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHH---------hc-----CCCh-------HHHHHHH---------
Q 007721 343 YASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRII---------VF-----KLSV-------DCLELRA--------- 392 (591)
Q Consensus 343 ~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al---------~l-----~p~~-------~~~~~r~--------- 392 (591)
..+.-+|-+..++..++.++.++|+++.|-+-++||| .+ ++.. ....||.
T Consensus 31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i 110 (360)
T PF04910_consen 31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYI 110 (360)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHH
Confidence 3568899999999999999999999999999999985 22 2210 0112332
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccchHHHHHHHHHc
Q 007721 393 WLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLIN 472 (591)
Q Consensus 393 ~~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~ 472 (591)
..+...|-+.-|++..+-.+.|||..-+ .++.....-..-.-+++ +-++.+++.+... .....+..
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP----~g~ll~ID~~ALrs~~y---~~Li~~~~~~~~~-------~~~~~~~~ 176 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDP----LGVLLFIDYYALRSRQY---QWLIDFSESPLAK-------CYRNWLSL 176 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCc----chhHHHHHHHHHhcCCH---HHHHHHHHhHhhh-------hhhhhhhh
Confidence 3588999999999999999999998322 22222222222222222 2222333321111 01111222
Q ss_pred CCCCchhHhhhHHHHHHhCCH---------------HHHHHHHHHHHhcCCchHHHHHh
Q 007721 473 DPGKSFLRFRQSLLLLRLNCQ---------------KAAMRCLRLARNHSSSEHERLVY 516 (591)
Q Consensus 473 ~P~~~~~~~~~g~~l~~l~~~---------------~eA~~~~~~Al~l~p~~~~a~~~ 516 (591)
-|-.-|..++++..+++. ++|-..+++|+..-|.-.-.+..
T Consensus 177 ---lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl~~Ll~ 232 (360)
T PF04910_consen 177 ---LPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVLVPLLD 232 (360)
T ss_pred ---CccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHHHHHHH
Confidence 345678899999999999 89999999999999886655544
No 335
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=91.14 E-value=1.5 Score=40.60 Aligned_cols=98 Identities=9% Similarity=-0.063 Sum_probs=74.1
Q ss_pred CCc-eEEEEcCeEEEhhHHHHhhcCHHHHHhhcCCCCCCC-----CceeEecCCCCCHHHHHHHHHHHhcCCCCCCChhH
Q 007721 54 DDS-VTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESK-----RKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGI 127 (591)
Q Consensus 54 ~~~-V~f~v~g~~~~aHr~iLaa~S~yF~amf~~~~~Es~-----~~~I~l~~~~vs~~~~~~ll~ylYtg~~~~~~~~~ 127 (591)
.+. |.|-|||..|.--|.-|.--+.-|..-|-..-.+.. .+-.-| +-+|.-|..+|+|+..|++. ++.-.
T Consensus 19 ~s~wVRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlI---DRDP~~FgpvLNylRhgklv-l~~l~ 94 (210)
T KOG2715|consen 19 VSLWVRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLI---DRDPFYFGPVLNYLRHGKLV-LNKLS 94 (210)
T ss_pred ceEEEEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEe---ccCcchHHHHHHHHhcchhh-hhhhh
Confidence 344 999999999999999998888777666654332221 123333 56799999999999999999 77744
Q ss_pred HHHHHHHHhhhChHHHHHHHHHHHHhhc
Q 007721 128 VLELLSFANRFCCEEMKSACDAHLASLV 155 (591)
Q Consensus 128 v~~lL~~A~~~~i~~L~~~C~~~L~~~i 155 (591)
=..+|.-|.+|.++.|.+.-.+.+....
T Consensus 95 eeGvL~EAefyn~~~li~likd~i~dRd 122 (210)
T KOG2715|consen 95 EEGVLEEAEFYNDPSLIQLIKDRIQDRD 122 (210)
T ss_pred hhccchhhhccCChHHHHHHHHHHHHHh
Confidence 4568999999999999887777666543
No 336
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.30 E-value=1.8 Score=44.07 Aligned_cols=89 Identities=13% Similarity=0.079 Sum_probs=74.1
Q ss_pred chhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHHHHHHHHhhcccccHHHHHHHHHHhhh
Q 007721 477 SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILAD 556 (591)
Q Consensus 477 ~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l~~~~~~~~~~~~~~~~ 556 (591)
..++..++..+...|+.+++...+++-++++|-+-.++..+=..++..|+...|+..|++.-.. -..|
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~------------~~ed 220 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT------------LAEE 220 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH------------hhhh
Confidence 3456667888888999999999999999999999999999999999999999999999987665 2234
Q ss_pred cCCCCCchhHHHHHHHHHhcCCC
Q 007721 557 TNLDPESSTYVIQLLEEALRCPS 579 (591)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~ 579 (591)
.++|| +..+-.+.+++++||-
T Consensus 221 lgi~P--~~~~~~~y~~~~~~~~ 241 (280)
T COG3629 221 LGIDP--APELRALYEEILRQDP 241 (280)
T ss_pred cCCCc--cHHHHHHHHHHhcccc
Confidence 44444 6788888888888864
No 337
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=90.21 E-value=0.34 Score=33.64 Aligned_cols=32 Identities=22% Similarity=0.252 Sum_probs=27.7
Q ss_pred HHHHHhHHHHHHHcCCHHHHHHHHHHhhcccc
Q 007721 511 HERLVYEGWILYDTGHREEALSRAEKSISIER 542 (591)
Q Consensus 511 ~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l~~ 542 (591)
++.|.-+|-+-...++|++|+..|++|++|+.
T Consensus 1 Adv~~~Lgeisle~e~f~qA~~D~~~aL~i~~ 32 (38)
T PF10516_consen 1 ADVYDLLGEISLENENFEQAIEDYEKALEIQE 32 (38)
T ss_pred CcHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 46788899999999999999999999998864
No 338
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=89.95 E-value=1.7 Score=39.14 Aligned_cols=81 Identities=19% Similarity=0.172 Sum_probs=61.3
Q ss_pred hHHHHhHHHHHHHh---CCHHHHHHHHHHHHh-cCCC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhhc
Q 007721 352 SFPYKYRAVAKMEE---GQIRAAISEIDRIIV-FKLS--VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRV 425 (591)
Q Consensus 352 ~~ay~~rg~~l~~l---~~~~eAl~~~~~al~-l~p~--~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~ 425 (591)
.+..+++|-++... .+.++.|..+...++ -.|. -++.|.++..+.++|+|+.|++.++..++.+|++ .
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n------~ 105 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNN------R 105 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCc------H
Confidence 34556666677664 456788999999996 4453 4778889999999999999999999999999998 5
Q ss_pred hHhHHHHHHHhhh
Q 007721 426 SGDHLVKLLNHHV 438 (591)
Q Consensus 426 ~~~~~~~~l~~~~ 438 (591)
.+..+...+....
T Consensus 106 Qa~~Lk~~ied~i 118 (149)
T KOG3364|consen 106 QALELKETIEDKI 118 (149)
T ss_pred HHHHHHHHHHHHH
Confidence 5666665554443
No 339
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=89.61 E-value=0.76 Score=37.37 Aligned_cols=50 Identities=14% Similarity=0.139 Sum_probs=36.1
Q ss_pred CChhHHHHHHHHHhhhChHHHHHHHHHHHHhhcCC--HHhHHHHHHHHHHhC
Q 007721 123 FCPGIVLELLSFANRFCCEEMKSACDAHLASLVGD--IEDALILIDYGLEER 172 (591)
Q Consensus 123 ~~~~~v~~lL~~A~~~~i~~L~~~C~~~L~~~i~~--~~n~~~ll~~A~~~~ 172 (591)
++.+.+.+|+.+|++++|+.|...|++.+...+.+ ++....++.+...+.
T Consensus 11 ~~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~gks~eeir~~fgi~~d~t 62 (78)
T PF01466_consen 11 VDNDELFDLLNAANYLDIKGLLDLCCKYIANMIKGKSPEEIRKYFGIENDLT 62 (78)
T ss_dssp S-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-HHHHHHHHT---TSS
T ss_pred cCHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhcCCCHHHHHHHcCCCCCCC
Confidence 56789999999999999999999999999998863 455555555444433
No 340
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=89.60 E-value=11 Score=43.83 Aligned_cols=185 Identities=14% Similarity=0.047 Sum_probs=126.8
Q ss_pred HHHHhCCHHHHHHHHHHHHhcCCC----------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhhchHhHH
Q 007721 361 AKMEEGQIRAAISEIDRIIVFKLS----------VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHL 430 (591)
Q Consensus 361 ~l~~l~~~~eAl~~~~~al~l~p~----------~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~~~~~~ 430 (591)
.+.-.+++.||-+.+.++-.+-|. .+....+|.+....|+.++|++..+.++..=|.. +++.+..+...
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~-~~~~r~~~~sv 502 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEA-AYRSRIVALSV 502 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccc-cchhhhhhhhh
Confidence 445567888888888888776443 1223457889999999999999999999988876 46677778888
Q ss_pred HHHHHhhhcccCchhhhhhhhhccccccccchHHHHHHHHHcCCCCchhHhhhHHHHHHhC--CHHHHHHHHH----HHH
Q 007721 431 VKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLN--CQKAAMRCLR----LAR 504 (591)
Q Consensus 431 ~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~~P~~~~~~~~~g~~l~~l~--~~~eA~~~~~----~Al 504 (591)
.+.+.....++++|...++..+.....-+. -+=...+...++.++...| .+++.+..+. +-+
T Consensus 503 ~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~------------~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l 570 (894)
T COG2909 503 LGEAAHIRGELTQALALMQQAEQMARQHDV------------YHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHL 570 (894)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHHHHHccc------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 888888888888886666655552221111 1112234556778888888 2233333322 333
Q ss_pred hcCCchHHHHHhHHHHHHHcCCHHHHHHHHHHhhcc----cccHHHHHHHHHHhhhcC
Q 007721 505 NHSSSEHERLVYEGWILYDTGHREEALSRAEKSISI----ERTFEAFFLKAYILADTN 558 (591)
Q Consensus 505 ~l~p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l----~~~~~~~~~~~~~~~~~~ 558 (591)
.-.|.+....-.++.+++.--+++++.+.....+++ .|+.-.+.+-++.||-..
T Consensus 571 ~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~ 628 (894)
T COG2909 571 EQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELE 628 (894)
T ss_pred hhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHH
Confidence 456777778888888887777788888888888775 566666666666666543
No 341
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=89.57 E-value=17 Score=41.38 Aligned_cols=22 Identities=14% Similarity=0.267 Sum_probs=13.1
Q ss_pred HHHhhhHHhhhccHHHHHHHHH
Q 007721 259 LHQLGCVMFEREEYKDACYYFE 280 (591)
Q Consensus 259 ~~~lG~~~~~~g~~~eA~~~f~ 280 (591)
|..-|.++....+++.|.++|.
T Consensus 664 ydkagdlfeki~d~dkale~fk 685 (1636)
T KOG3616|consen 664 YDKAGDLFEKIHDFDKALECFK 685 (1636)
T ss_pred HHhhhhHHHHhhCHHHHHHHHH
Confidence 4445555556666666666655
No 342
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=88.63 E-value=0.55 Score=29.43 Aligned_cols=26 Identities=27% Similarity=0.151 Sum_probs=22.7
Q ss_pred chhHhhhHHHHHHhCCHHHHHHHHHH
Q 007721 477 SFLRFRQSLLLLRLNCQKAAMRCLRL 502 (591)
Q Consensus 477 ~~~~~~~g~~l~~l~~~~eA~~~~~~ 502 (591)
+.+++++|.++..+|++++|.+.+++
T Consensus 1 ~~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 1 PRARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 45788999999999999999998763
No 343
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=88.33 E-value=53 Score=37.59 Aligned_cols=178 Identities=13% Similarity=0.003 Sum_probs=99.1
Q ss_pred ChHHHHhHHHHHHHhCCHHHHHHHHH--------HHHhcCCChHHH----HHHHHHHHHcCCHHHHHHHHHHHHh-cCCc
Q 007721 351 LSFPYKYRAVAKMEEGQIRAAISEID--------RIIVFKLSVDCL----ELRAWLFIAADDYESALRDTLALLA-LESN 417 (591)
Q Consensus 351 ~~~ay~~rg~~l~~l~~~~eAl~~~~--------~al~l~p~~~~~----~~r~~~~~~~g~~~~A~~d~~~al~-l~P~ 417 (591)
.+..++-.|..++..|+.+.|+..|. .+....+..+.+ .|+.+++...+.-..-..+...+++ ++|.
T Consensus 403 ~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~ 482 (608)
T PF10345_consen 403 YPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPL 482 (608)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCcc
Confidence 47778889999999999999999998 555555544432 4466777666654443335666665 6663
Q ss_pred c--hh-hhhhchHhHHHHHHHhhhcc-cCchhhhhhhhhccccccccchHHHHHHHHHcCCCCchhHhhhHHHHHHhCCH
Q 007721 418 Y--MM-FHGRVSGDHLVKLLNHHVRS-WSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQ 493 (591)
Q Consensus 418 ~--~~-~~~~~~~~~~~~~l~~~~~~-~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~ 493 (591)
. .+ -+.+++.......+...... ..++. ..+-+ ++..+.+++.+.---.-+.+-+|..+. .|..
T Consensus 483 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k--~~l~~---------~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~ 550 (608)
T PF10345_consen 483 CSNSPNSYNRTAYCLVLATYNTFEPFSSNEAK--RHLQE---------ALKMANNKLGNSQLLAILLNLMGHRLF-EGDV 550 (608)
T ss_pred ccCCccHHHHHHHHHHHHHHhhCCccccHHHH--HHHHH---------HHHHHHHhhccchHHHHHHHHHHHHHH-cCCH
Confidence 2 11 12222222222111111100 11111 01111 122222223332223334555666666 7888
Q ss_pred HHHHHHHHHHHhcCCch---HHHHH---hHHHH---HHHcCCHHHHHHHHHHhhcc
Q 007721 494 KAAMRCLRLARNHSSSE---HERLV---YEGWI---LYDTGHREEALSRAEKSISI 540 (591)
Q Consensus 494 ~eA~~~~~~Al~l~p~~---~~a~~---~~G~~---l~~~g~~eeAl~~~e~ai~l 540 (591)
+|......+++.+.+.. ...+| +.|.+ +-..|+.++|-...++...+
T Consensus 551 ~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~~ 606 (608)
T PF10345_consen 551 GEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDRV 606 (608)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh
Confidence 88888887787766555 87777 44443 44679999998887776543
No 344
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=88.32 E-value=0.41 Score=49.56 Aligned_cols=60 Identities=13% Similarity=0.070 Sum_probs=45.1
Q ss_pred HHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHH
Q 007721 463 LAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILY 522 (591)
Q Consensus 463 l~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~ 522 (591)
+-.-.-+++.+|....+|++++..+..+.++++|++++..|...+|++....--+-.+-.
T Consensus 295 ~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~ 354 (372)
T KOG0546|consen 295 RFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQ 354 (372)
T ss_pred eeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhh
Confidence 334456667888888888888888888888888888888888888888766544443333
No 345
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.05 E-value=2 Score=39.42 Aligned_cols=63 Identities=17% Similarity=0.153 Sum_probs=31.2
Q ss_pred HHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCC
Q 007721 464 AVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGH 526 (591)
Q Consensus 464 ~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~ 526 (591)
..++.+-.+.|+.+++..--|.++...|++.||++.++...+-.|..+.+---+.+||+-+|+
T Consensus 31 ~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 31 AMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred HHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 344444444555555555555555555555555555555555444444444444555555544
No 346
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=87.88 E-value=2.9 Score=45.41 Aligned_cols=83 Identities=6% Similarity=-0.007 Sum_probs=65.2
Q ss_pred HHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCC-HHHHHHHHHHhhccc
Q 007721 463 LAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGH-REEALSRAEKSISIE 541 (591)
Q Consensus 463 l~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~-~eeAl~~~e~ai~l~ 541 (591)
+-.|++|+..-|+++.+|.+-..--.+-+-+.+--..|.+++...|++++.+++-+..+|.-+. ++.|-+.+-++++.+
T Consensus 91 v~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~n 170 (568)
T KOG2396|consen 91 VFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFN 170 (568)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcC
Confidence 4477888888888888887776655566667777788888888888888888888877777776 888888888888888
Q ss_pred ccHH
Q 007721 542 RTFE 545 (591)
Q Consensus 542 ~~~~ 545 (591)
|+.+
T Consensus 171 pdsp 174 (568)
T KOG2396|consen 171 PDSP 174 (568)
T ss_pred CCCh
Confidence 8776
No 347
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=87.80 E-value=4 Score=44.06 Aligned_cols=165 Identities=18% Similarity=0.142 Sum_probs=97.9
Q ss_pred HhCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhhchHhHHHHHHHhhhcccC
Q 007721 364 EEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWS 442 (591)
Q Consensus 364 ~l~~~~eAl~~~~~al~l~p~-~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~ 442 (591)
..|+...|-.-...+++-.|. |....+++.+...+|+|++|.++..-+-.+=..- ..+.+-+..-..-+.+|+
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~------~~~~~~~~r~~~~l~r~~ 374 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTT------DSTLRCRLRSLHGLARWR 374 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCC------chHHHHHHHhhhchhhHH
Confidence 357777777778888887784 6766778888888898888888765544322111 124444444445566666
Q ss_pred chhhhhhhhhccccccccchHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHH-hHHHH-
Q 007721 443 PADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLV-YEGWI- 520 (591)
Q Consensus 443 ~a~~~~~l~~~~~~~~~~~al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~-~~G~~- 520 (591)
+| ++.-.-+|..+-..++...--+..-..+|.+++|.-...+.+.++|..-...+ .+...
T Consensus 375 ~a------------------~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~~~ 436 (831)
T PRK15180 375 EA------------------LSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSSTQ 436 (831)
T ss_pred HH------------------HHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeeccce
Confidence 66 44444445554444544444444445679999999999999999986432211 11111
Q ss_pred HHHcC-CHHHHHHHHHHhhcccccHHHHHHHHHHhh
Q 007721 521 LYDTG-HREEALSRAEKSISIERTFEAFFLKAYILA 555 (591)
Q Consensus 521 l~~~g-~~eeAl~~~e~ai~l~~~~~~~~~~~~~~~ 555 (591)
++..| -|.||.. .-|.-|+-...|.--|..|+
T Consensus 437 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 469 (831)
T PRK15180 437 YFNDGNAFSEAFH---AGIQSQRLNDTFMETALSLA 469 (831)
T ss_pred eccCcchHHHHHH---hhhhhhhhhHHHHHHHHHHH
Confidence 22223 2555543 33444555556666665555
No 348
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=87.61 E-value=0.41 Score=49.65 Aligned_cols=84 Identities=13% Similarity=0.051 Sum_probs=60.8
Q ss_pred eEEEE-cCeEEEhhHHHHhhcCHHHHHhhcCCCCCCCCceeEecCCCCCHHHHHHHHHHHhcCCCCCCChhHHHHHHHHH
Q 007721 57 VTFCV-RDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIVLELLSFA 135 (591)
Q Consensus 57 V~f~v-~g~~~~aHr~iLaa~S~yF~amf~~~~~Es~~~~I~l~~~~vs~~~~~~ll~ylYtg~~~~~~~~~v~~lL~~A 135 (591)
++|.+ +|+.|-|||..|+++|.+|..-+..-+. ...+|+= ..+-+.+|..+++|+|-..-. +-++.--+|+++.
T Consensus 152 i~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~~--~~heI~~--~~v~~~~f~~flk~lyl~~na-~~~~qynallsi~ 226 (516)
T KOG0511|consen 152 IDFLQQEGANFDAHKFLLEARSSNYFPKDVMFYV--QGHEIEA--HRVILSAFSPFLKQLYLNTNA-EWKDQYNALLSIE 226 (516)
T ss_pred hHHHhhccccccHHHHHHHhhhcccCchhhhhcc--ccCchhh--hhhhHhhhhHHHHHHHHhhhh-hhhhHHHHHHhhh
Confidence 77776 6788999999999999988543332221 1234543 567899999999999976333 3344557899999
Q ss_pred hhhChHHHHH
Q 007721 136 NRFCCEEMKS 145 (591)
Q Consensus 136 ~~~~i~~L~~ 145 (591)
.+|+++.|..
T Consensus 227 ~kF~~e~l~~ 236 (516)
T KOG0511|consen 227 VKFSKEKLSL 236 (516)
T ss_pred hhccHHHhHH
Confidence 9999987763
No 349
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.43 E-value=5 Score=36.85 Aligned_cols=56 Identities=20% Similarity=0.201 Sum_probs=53.3
Q ss_pred hCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHHHHHHHHhhcccccHH
Q 007721 490 LNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE 545 (591)
Q Consensus 490 l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l~~~~~ 545 (591)
.+.+.++...+....-+.|+.++.....||+....|+++||++.+++..+--|++.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p 78 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPP 78 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCch
Confidence 78999999999999999999999999999999999999999999999999888865
No 350
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=87.23 E-value=40 Score=40.36 Aligned_cols=96 Identities=14% Similarity=0.036 Sum_probs=56.6
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHcCCCCh---HHHHhHHHHHHHh-------CCHHHHHHHHHHHHhcCCChHHHHHH
Q 007721 322 GWMYQERSLYNLGREKIVDLNYASELDPTLS---FPYKYRAVAKMEE-------GQIRAAISEIDRIIVFKLSVDCLELR 391 (591)
Q Consensus 322 g~a~~~r~~y~~~~eA~~dl~~Ai~LdP~~~---~ay~~rg~~l~~l-------~~~~eAl~~~~~al~l~p~~~~~~~r 391 (591)
+.++.+-..| +.|+.-|++.-.-=|.-. +|.+..|.++.++ ..+++|+.+|++.-.--..|-.|...
T Consensus 482 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (932)
T PRK13184 482 PDAFLAEKLY---DQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLEYLGK 558 (932)
T ss_pred cHHHHhhHHH---HHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchHHHhH
Confidence 3444444444 455555555444444432 3445555555543 24677777777765321124434556
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCcchh
Q 007721 392 AWLFIAADDYESALRDTLALLALESNYMM 420 (591)
Q Consensus 392 ~~~~~~~g~~~~A~~d~~~al~l~P~~~~ 420 (591)
+.+|..+|+|+|=+++|.-|++.-|+++.
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (932)
T PRK13184 559 ALVYQRLGEYNEEIKSLLLALKRYSQHPE 587 (932)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhcCCCCc
Confidence 67888888888888888888888887753
No 351
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=86.27 E-value=35 Score=34.75 Aligned_cols=165 Identities=12% Similarity=0.021 Sum_probs=102.1
Q ss_pred HHhCCHHHHHHHHHHHHhcC----CC-h----HHHHHHHHHHHHcC-CHHHHHHHHHHHHhcC----CcchhhhhhchHh
Q 007721 363 MEEGQIRAAISEIDRIIVFK----LS-V----DCLELRAWLFIAAD-DYESALRDTLALLALE----SNYMMFHGRVSGD 428 (591)
Q Consensus 363 ~~l~~~~eAl~~~~~al~l~----p~-~----~~~~~r~~~~~~~g-~~~~A~~d~~~al~l~----P~~~~~~~~~~~~ 428 (591)
.++|+++-|...+.|+=.+. |+ . ...|+-|.-....+ ++++|+..+++|.++- +.... .....
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~---~~~~~ 80 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKL---SPDGS 80 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhcccc---CCcHH
Confidence 46789999999999987765 32 1 22466777788888 9999999999999982 21110 01111
Q ss_pred HHHHHHHhhhcccCchhhhhhhhhccccccccc-hHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcC
Q 007721 429 HLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIG-SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHS 507 (591)
Q Consensus 429 ~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~-al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~ 507 (591)
.++..+ -..+++.|-.|...+... +...++.+-.--|+.+..++.+=.++.+.++.+++.+.+++++..-
T Consensus 81 elr~~i---------L~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~ 151 (278)
T PF08631_consen 81 ELRLSI---------LRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV 151 (278)
T ss_pred HHHHHH---------HHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc
Confidence 111111 011123333444434443 5667777777779999999888788888999999999999999876
Q ss_pred C-chHHHHHhHHHH-HHHcCCHHHHHHHHHHhhc
Q 007721 508 S-SEHERLVYEGWI-LYDTGHREEALSRAEKSIS 539 (591)
Q Consensus 508 p-~~~~a~~~~G~~-l~~~g~~eeAl~~~e~ai~ 539 (591)
+ .+..--...+.+ .+-.-....|...+.+.+.
T Consensus 152 ~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~ 185 (278)
T PF08631_consen 152 DHSESNFDSILHHIKQLAEKSPELAAFCLDYLLL 185 (278)
T ss_pred ccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHH
Confidence 5 221111112222 2222334567777777665
No 352
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=85.94 E-value=18 Score=35.47 Aligned_cols=96 Identities=20% Similarity=0.136 Sum_probs=59.1
Q ss_pred hCCHHHHHHHHHHHHhc------CCCh--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhhchHhHHHHHHHh
Q 007721 365 EGQIRAAISEIDRIIVF------KLSV--DCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNH 436 (591)
Q Consensus 365 l~~~~eAl~~~~~al~l------~p~~--~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~ 436 (591)
...+++|++.|.-||-. +|.. ..+...+|+|..+|+.+.....+++|++.-
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y--------------------- 148 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFY--------------------- 148 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHH---------------------
Confidence 44567777777666643 2221 122335799999999776666666655432
Q ss_pred hhcccCchhhhhhhhhccccccccchHHHHHHHHHcCCC--C----chhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCch
Q 007721 437 HVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPG--K----SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE 510 (591)
Q Consensus 437 ~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~~P~--~----~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~ 510 (591)
.++++.+.. . ..+.+..|++..++|++++|++++.+.+...-.+
T Consensus 149 ------------------------------~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 149 ------------------------------EEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred ------------------------------HHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 222222211 1 1256678888888888888888888888766554
Q ss_pred H
Q 007721 511 H 511 (591)
Q Consensus 511 ~ 511 (591)
.
T Consensus 199 ~ 199 (214)
T PF09986_consen 199 K 199 (214)
T ss_pred C
Confidence 4
No 353
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=85.08 E-value=19 Score=35.84 Aligned_cols=59 Identities=8% Similarity=0.045 Sum_probs=38.7
Q ss_pred HHhHHHHHHHhCCHHHHHHHHHHHHhcCCC--hHHHHHHHHHH-HHcCCHHHHHHHHHHHHh
Q 007721 355 YKYRAVAKMEEGQIRAAISEIDRIIVFKLS--VDCLELRAWLF-IAADDYESALRDTLALLA 413 (591)
Q Consensus 355 y~~rg~~l~~l~~~~eAl~~~~~al~l~p~--~~~~~~r~~~~-~~~g~~~~A~~d~~~al~ 413 (591)
+.++|.+..+.|||++++..+.+++..+|. .+--.+...+| ...|..-.+.+-+....+
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 567889999999999999999999999885 33334444332 334444444444444433
No 354
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=84.78 E-value=5.4 Score=32.46 Aligned_cols=59 Identities=8% Similarity=0.053 Sum_probs=47.1
Q ss_pred hHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCC-hHHHHHHH---HHHHHcCCHHHHHHHHHH
Q 007721 352 SFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRA---WLFIAADDYESALRDTLA 410 (591)
Q Consensus 352 ~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~-~~~~~~r~---~~~~~~g~~~~A~~d~~~ 410 (591)
+...+..|.=+...++.++|+..++++++-.++ ++.+...| .+|...|+|.++++.--+
T Consensus 6 ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 6 AKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567788888999999999999999999887 56666666 479999999998876443
No 355
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.73 E-value=56 Score=35.79 Aligned_cols=179 Identities=16% Similarity=0.106 Sum_probs=109.8
Q ss_pred HHhHHHHHHHhCCHHHHHHHHHHHHhc---CCC--------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chhhh
Q 007721 355 YKYRAVAKMEEGQIRAAISEIDRIIVF---KLS--------VDCLELRAWLFIAADDYESALRDTLALLALESN-YMMFH 422 (591)
Q Consensus 355 y~~rg~~l~~l~~~~eAl~~~~~al~l---~p~--------~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~-~~~~~ 422 (591)
.-++..+.+-.|++.+|+..+..+... -|. +..+..+|.-....+-++.|...|..|.++--. ++++.
T Consensus 326 LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~ 405 (629)
T KOG2300|consen 326 LEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAF 405 (629)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHH
Confidence 345677777789999999999888876 233 223456777777888999999999999886543 33222
Q ss_pred hhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccchHHHHHHHHHc-CCCC----------chhHhhhHHHHHHhC
Q 007721 423 GRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLIN-DPGK----------SFLRFRQSLLLLRLN 491 (591)
Q Consensus 423 ~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~-~P~~----------~~~~~~~g~~l~~l~ 491 (591)
-+..+ .-.-+++-+ .+++.+++++ .|-+ +-+++-.|......|
T Consensus 406 ~nlnl------Ai~YL~~~~--------------------~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn 459 (629)
T KOG2300|consen 406 CNLNL------AISYLRIGD--------------------AEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQN 459 (629)
T ss_pred HHHhH------HHHHHHhcc--------------------HHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhc
Confidence 21111 111111111 1223333322 2221 346788999999999
Q ss_pred CHHHHHHHHHHHHhcCCchHHH--------HHhHHHHHHHcCCHHHHHHHHHHhhcccccHHHHHHHHHHhhhcCCCCCc
Q 007721 492 CQKAAMRCLRLARNHSSSEHER--------LVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPES 563 (591)
Q Consensus 492 ~~~eA~~~~~~Al~l~p~~~~a--------~~~~G~~l~~~g~~eeAl~~~e~ai~l~~~~~~~~~~~~~~~~~~~~~~~ 563 (591)
++.||.+-+++.++.. +++- +.-+|.+.+-.|+.-|+-..-+- ++.||...-|-.-
T Consensus 460 ~lnEaK~~l~e~Lkma--naed~~rL~a~~LvLLs~v~lslgn~~es~nmvrp--------------amqlAkKi~Di~v 523 (629)
T KOG2300|consen 460 DLNEAKRFLRETLKMA--NAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRP--------------AMQLAKKIPDIPV 523 (629)
T ss_pred cHHHHHHHHHHHHhhc--chhhHHHHHHHHHHHHHHHHHHhcchHHHHhccch--------------HHHHHhcCCCchH
Confidence 9999999999999988 4433 34556666667777665433332 3445555555554
Q ss_pred hhHHHHHHHHHh
Q 007721 564 STYVIQLLEEAL 575 (591)
Q Consensus 564 ~~~~~~~~~~~~ 575 (591)
=.-+-+++++-+
T Consensus 524 qLws~si~~~L~ 535 (629)
T KOG2300|consen 524 QLWSSSILTDLY 535 (629)
T ss_pred HHHHHHHHHHHH
Confidence 444555555544
No 356
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.54 E-value=37 Score=32.19 Aligned_cols=54 Identities=19% Similarity=0.133 Sum_probs=36.3
Q ss_pred HHhCCHHHHHHHHHHHHhcCC-ChHH-HHHH-HHHHHHcCCHHHHHHHHHHHHhcCC
Q 007721 363 MEEGQIRAAISEIDRIIVFKL-SVDC-LELR-AWLFIAADDYESALRDTLALLALES 416 (591)
Q Consensus 363 ~~l~~~~eAl~~~~~al~l~p-~~~~-~~~r-~~~~~~~g~~~~A~~d~~~al~l~P 416 (591)
...|+.++|++.|...-.-.- +++. ...| +.+..+.|+-.+|+.+|+.+-.-.|
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~ 125 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTS 125 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCC
Confidence 345778888888877665544 2332 3334 4578888888888888888777665
No 357
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=84.22 E-value=4.8 Score=42.86 Aligned_cols=107 Identities=10% Similarity=-0.054 Sum_probs=63.5
Q ss_pred HhhhHHhhhccHHHHHHHHHHHhhccccchhhhhHHHHHHhCC-hHHHHHHHHH-HHHhcCCCHHHHHHHHhcCCcHHHH
Q 007721 261 QLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQ-QYSAYKLINS-IISEHKPTGWMYQERSLYNLGREKI 338 (591)
Q Consensus 261 ~lG~~~~~~g~~~eA~~~f~~Al~~~~~~a~~~la~~~~~~G~-~~~A~~~~~~-aI~~~~~~g~a~~~r~~y~~~~eA~ 338 (591)
.-+...+++|+|..|...|..|+++=.. | ...|+ .+...++..+ +--+.+.+...|...+.- +-|+
T Consensus 181 ~das~~yrqk~ya~Aa~rF~taLelcsk------g---~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkp---dlAL 248 (569)
T PF15015_consen 181 KDASSCYRQKKYAVAAGRFRTALELCSK------G---AALSKPFKASAEDISSVASFIETKLVTCYLRMRKP---DLAL 248 (569)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhh------h---hhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCC---chHH
Confidence 3466677788888888888888776111 0 01122 1111111111 111233444555544332 6677
Q ss_pred HHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHH
Q 007721 339 VDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRII 379 (591)
Q Consensus 339 ~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al 379 (591)
..--+-|.++|...-.+..+|.+...+.||.||-..+--|.
T Consensus 249 nh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 249 NHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred HHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777888888888888888888888888888877665554
No 358
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=83.80 E-value=3.1 Score=41.94 Aligned_cols=61 Identities=16% Similarity=0.033 Sum_probs=39.9
Q ss_pred HHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHHHHHHHHhhcccccHH-HHHHHHHHhhh
Q 007721 496 AMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE-AFFLKAYILAD 556 (591)
Q Consensus 496 A~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l~~~~~-~~~~~~~~~~~ 556 (591)
|++.|++|+.+.|+++..++.+|.+....|+.=+|+=.|-||+...-.|. |.-+-.-.+..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 56777777777777777777777777777777777777777777644444 55554444444
No 359
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=83.41 E-value=73 Score=34.67 Aligned_cols=69 Identities=16% Similarity=0.056 Sum_probs=52.9
Q ss_pred HHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHHHHHHHHhhcccccHHHHHHHHHHhh
Q 007721 486 LLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILA 555 (591)
Q Consensus 486 ~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l~~~~~~~~~~~~~~~ 555 (591)
-|...|.+.++.-...=..+++| ++.++.-+|.+++...+|+|||..+..----++-.++---||.+|-
T Consensus 471 yLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~n~~~~dskvqKAl~lC 539 (549)
T PF07079_consen 471 YLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLPPNERMRDSKVQKALALC 539 (549)
T ss_pred HHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCCCchhhHHHHHHHHHHHH
Confidence 34557888888888888899999 8999999999999999999999777543332333335556777664
No 360
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=82.69 E-value=44 Score=35.53 Aligned_cols=162 Identities=12% Similarity=-0.000 Sum_probs=97.2
Q ss_pred HhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCcchh-----hhhhchHhHHHHHHHhhhcccCchhhh
Q 007721 379 IVFKL-SVDCLELRAWLFIAADDYESALRDTLALLA-----LESNYMM-----FHGRVSGDHLVKLLNHHVRSWSPADCW 447 (591)
Q Consensus 379 l~l~p-~~~~~~~r~~~~~~~g~~~~A~~d~~~al~-----l~P~~~~-----~~~~~~~~~~~~~l~~~~~~~~~a~~~ 447 (591)
|+-+| ..+.+...+.++..+||.+.|-...+|||= +.|.+.. ..|+... .-+..+.-..|
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL---------~~~~~eNR~ff 103 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRL---------DYRRPENRQFF 103 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCcccc---------CCccccchHHH
Confidence 45678 578888889999999999999999999974 3344411 1111111 11111111112
Q ss_pred hhhhhccccc---cccc-hHHHHHHHHHcCCC-Cchh-HhhhHHHHHHhCCHHHHHHHHHHHHh--------cCCchHHH
Q 007721 448 IKLYDRWSSV---DDIG-SLAVINQMLINDPG-KSFL-RFRQSLLLLRLNCQKAAMRCLRLARN--------HSSSEHER 513 (591)
Q Consensus 448 ~~l~~~~~~~---~~~~-al~~~~~al~~~P~-~~~~-~~~~g~~l~~l~~~~eA~~~~~~Al~--------l~p~~~~a 513 (591)
..++-..... +-.+ |++...=.+.+||. ++.. .+..-..-++-+.++-=++.++.... .-| .-
T Consensus 104 lal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lP---n~ 180 (360)
T PF04910_consen 104 LALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLP---NF 180 (360)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCc---cH
Confidence 2222211111 2233 57777777888888 5543 22233333445555544444443332 223 34
Q ss_pred HHhHHHHHHHcCCH---------------HHHHHHHHHhhcccccHHHHHHHHH
Q 007721 514 LVYEGWILYDTGHR---------------EEALSRAEKSISIERTFEAFFLKAY 552 (591)
Q Consensus 514 ~~~~G~~l~~~g~~---------------eeAl~~~e~ai~l~~~~~~~~~~~~ 552 (591)
-+..+.+++.+++- ++|-....+||..-|.+..-.++..
T Consensus 181 a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl~~Ll~~l 234 (360)
T PF04910_consen 181 AFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVLVPLLDKL 234 (360)
T ss_pred HHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHHHHHHHHh
Confidence 57888889999888 8999999999999999986666666
No 361
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=82.67 E-value=8 Score=38.91 Aligned_cols=116 Identities=13% Similarity=-0.001 Sum_probs=74.8
Q ss_pred hHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHHHHHHH------
Q 007721 462 SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAE------ 535 (591)
Q Consensus 462 al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~~e------ 535 (591)
|..+|.+|+.+.|+++..|+.+|.+....|+.=+|+=.|-|++-..--.+.|..|+..++-+..+--+.+..-+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~~~~~~~~~~~~~~~~~~~ 80 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEKAQSHLSNKKSSESNNKSS 80 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH---------HTTS-----
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhcccchhccchhhccccc
Confidence 46689999999999999999999999999999999999999998887778899999999888211111111100
Q ss_pred --HhhcccccHHHHHHHHHHhhhcCCCCCc----hhHHHHHHHHHhcC
Q 007721 536 --KSISIERTFEAFFLKAYILADTNLDPES----STYVIQLLEEALRC 577 (591)
Q Consensus 536 --~ai~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 577 (591)
.-....+.+..+|++-...-=+..|.++ ...+++-|+..++=
T Consensus 81 ~~~~~~~~~~~~~~Fl~l~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~ 128 (278)
T PF10373_consen 81 SKSRSELEERFISYFLRLHGILFTKIDLESFSELCNEFLSDLENLLSE 128 (278)
T ss_dssp ---SS--HHHHHHHHHHHHHHHHHT--GGGHHHHHHHHHHHHHHHHHT
T ss_pred cccccchHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHHHHH
Confidence 1222345666777776665544433332 33456666666554
No 362
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=82.24 E-value=6.9 Score=32.80 Aligned_cols=57 Identities=19% Similarity=0.193 Sum_probs=40.6
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCC----h------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc
Q 007721 362 KMEEGQIRAAISEIDRIIVFKLS----V------DCLELRAWLFIAADDYESALRDTLALLALESNY 418 (591)
Q Consensus 362 l~~l~~~~eAl~~~~~al~l~p~----~------~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~ 418 (591)
-.+.|+|.+|++.+.+....... . .++.+++.++...|++++|+..++.|+++.-..
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~ 74 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN 74 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 45678888888888777766431 1 223456778888888888888888888877543
No 363
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=82.16 E-value=3.5 Score=28.17 Aligned_cols=30 Identities=27% Similarity=0.239 Sum_probs=14.6
Q ss_pred HHHHHHHHHHcCCHHHHHHH--HHHHHhcCCc
Q 007721 388 LELRAWLFIAADDYESALRD--TLALLALESN 417 (591)
Q Consensus 388 ~~~r~~~~~~~g~~~~A~~d--~~~al~l~P~ 417 (591)
++..|..+..+|++++|+.. |+-+..++|.
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 34445555555555555555 3355555543
No 364
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=82.04 E-value=1 Score=46.69 Aligned_cols=50 Identities=10% Similarity=-0.094 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 007721 335 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS 384 (591)
Q Consensus 335 ~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~ 384 (591)
..|+..-.-+++.+|..+.||+.||..++.+.++++|+.++..+...+|+
T Consensus 292 ~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~ 341 (372)
T KOG0546|consen 292 GGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPN 341 (372)
T ss_pred CcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcc
Confidence 44444445555566666666666666666666666666666666666664
No 365
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=82.00 E-value=6.7 Score=38.50 Aligned_cols=49 Identities=16% Similarity=0.040 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHhcCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 007721 368 IRAAISEIDRIIVFKLS-------VDCLELRAWLFIAADDYESALRDTLALLALES 416 (591)
Q Consensus 368 ~~eAl~~~~~al~l~p~-------~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P 416 (591)
+..|+..|.+|++-... ....+..|.+...+|++++|++.|.+++..--
T Consensus 141 l~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 141 LRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 45566666666655422 23456788888888999999998888887543
No 366
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.15 E-value=42 Score=37.09 Aligned_cols=204 Identities=17% Similarity=0.139 Sum_probs=128.3
Q ss_pred HHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCC-----hHHHHHHHHHHHHcCCHHHHHHHHH
Q 007721 335 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-----VDCLELRAWLFIAADDYESALRDTL 409 (591)
Q Consensus 335 ~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~-----~~~~~~r~~~~~~~g~~~~A~~d~~ 409 (591)
....+.+.+....-|..+--..+.|..+...|+.+.|+..++..+. +. .-+++-|+|++..+-+|..|-.+++
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~ 327 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFD 327 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4445556778888999999999999999999999999999999986 43 2245668888888888888877777
Q ss_pred HHHhcCCcchh---hhh----------------hchH-----hHHHHHHHh-------------hhcccCc--------h
Q 007721 410 ALLALESNYMM---FHG----------------RVSG-----DHLVKLLNH-------------HVRSWSP--------A 444 (591)
Q Consensus 410 ~al~l~P~~~~---~~~----------------~~~~-----~~~~~~l~~-------------~~~~~~~--------a 444 (591)
....++-=..- |.- +... .....++.. .+++|.. .
T Consensus 328 ~L~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~~~~ 407 (546)
T KOG3783|consen 328 LLRDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNASIL 407 (546)
T ss_pred HHHhhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhcccccccccc
Confidence 66665431111 110 0000 000011111 1111111 1
Q ss_pred hh--hhhhhhccccccccc--hHHHHHHHHHcCCCC-----c-hhHhhhHHHHHHhCCHHHHHHHHHHHHhc---CCc--
Q 007721 445 DC--WIKLYDRWSSVDDIG--SLAVINQMLINDPGK-----S-FLRFRQSLLLLRLNCQKAAMRCLRLARNH---SSS-- 509 (591)
Q Consensus 445 ~~--~~~l~~~~~~~~~~~--al~~~~~al~~~P~~-----~-~~~~~~g~~l~~l~~~~eA~~~~~~Al~l---~p~-- 509 (591)
.+ ...+...|....... .+.-++..++. |+. . .-++-+|.+|-.||+.+.|...+..+++- ...
T Consensus 408 la~P~~El~Y~Wngf~~~s~~~l~k~~~~~~~-~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~ 486 (546)
T KOG3783|consen 408 LASPYYELAYFWNGFSRMSKNELEKMRAELEN-PKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDL 486 (546)
T ss_pred ccchHHHHHHHHhhcccCChhhHHHHHHHHhc-cCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcccc
Confidence 11 123334455543333 23333444443 322 1 23788999999999999999999998832 222
Q ss_pred --hHHHHHhHHHHHHHcCC-HHHHHHHHHHhhccc
Q 007721 510 --EHERLVYEGWILYDTGH-REEALSRAEKSISIE 541 (591)
Q Consensus 510 --~~~a~~~~G~~l~~~g~-~eeAl~~~e~ai~l~ 541 (591)
.|.|+|-+|..+.++|. +.||.+..+||-.-.
T Consensus 487 w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~ 521 (546)
T KOG3783|consen 487 WAVPFALYELALLYWDLGGGLKEARALLLKAREYA 521 (546)
T ss_pred ccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhc
Confidence 36789999999999999 888888877776644
No 367
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=80.95 E-value=6.1 Score=35.65 Aligned_cols=75 Identities=17% Similarity=0.120 Sum_probs=58.9
Q ss_pred chhHhhhHHHHHH---hCCHHHHHHHHHHHHh-cCC-chHHHHHhHHHHHHHcCCHHHHHHHHHHhhcccccHH-HHHHH
Q 007721 477 SFLRFRQSLLLLR---LNCQKAAMRCLRLARN-HSS-SEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE-AFFLK 550 (591)
Q Consensus 477 ~~~~~~~g~~l~~---l~~~~eA~~~~~~Al~-l~p-~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l~~~~~-~~~~~ 550 (591)
....|+.+.+|.+ ..+.++.+.+++..++ -.| ..-+=+||++...|++|+|++|+..-+.-++.+||+. |=-||
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk 111 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK 111 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 4567888888887 4556788889998886 333 3456789999999999999999999999999999887 55555
Q ss_pred H
Q 007721 551 A 551 (591)
Q Consensus 551 ~ 551 (591)
-
T Consensus 112 ~ 112 (149)
T KOG3364|consen 112 E 112 (149)
T ss_pred H
Confidence 3
No 368
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=80.40 E-value=2.2 Score=43.12 Aligned_cols=84 Identities=17% Similarity=0.175 Sum_probs=59.0
Q ss_pred eEEEEcCeEEEhhHHHHhhcCH-HHHHhhcCCCCC---CCCceeEecCCCCCHHHHHHHHHHHhcCCCCCCChhHHHHHH
Q 007721 57 VTFCVRDKEISFVRNKIASLSS-PFKAMLYGGFVE---SKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIVLELL 132 (591)
Q Consensus 57 V~f~v~g~~~~aHr~iLaa~S~-yF~amf~~~~~E---s~~~~I~l~~~~vs~~~~~~ll~ylYtg~~~~~~~~~v~~lL 132 (591)
|+..|.+-.|-..+.+|.+.-. -.-.||.+++.= ...++.++. .||+..+|++||+|--||.+...+.-.|-+|-
T Consensus 98 ~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVA-dGi~s~vFRAILdYYksG~iRCP~~vSvpELr 176 (438)
T KOG3840|consen 98 VCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVA-DGMTSSCFRAILDYYQSGTMRCPSSVSVSELR 176 (438)
T ss_pred eEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehh-cchhHHHHHHHHHHHhcCceeCCCCCchHHHH
Confidence 8999999999998888855422 235677776422 223466664 69999999999999999988865555566666
Q ss_pred HHHhhhChH
Q 007721 133 SFANRFCCE 141 (591)
Q Consensus 133 ~~A~~~~i~ 141 (591)
+++++++|+
T Consensus 177 EACDYLlip 185 (438)
T KOG3840|consen 177 EACDYLLVP 185 (438)
T ss_pred hhcceEEee
Confidence 666665543
No 369
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=79.97 E-value=2.2 Score=45.79 Aligned_cols=106 Identities=20% Similarity=0.226 Sum_probs=66.4
Q ss_pred hhhhhHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHhcCCcHHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHH
Q 007721 290 SLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIR 369 (591)
Q Consensus 290 a~~~la~~~~~~G~~~~A~~~~~~aI~~~~~~g~a~~~r~~y~~~~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~ 369 (591)
+..|+.|++..+|++..|++.++.+ ..+.. + -|. +.-+-+...|++.|-+|++++||.
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~i-dl~~~--------~----------l~~---~V~~~~is~~YyvGFaylMlrRY~ 181 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENI-DLNKK--------G----------LYT---KVPACHISTYYYVGFAYLMLRRYA 181 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhcc-Ccccc--------h----------hhc---cCcchheehHHHHHHHHHHHHHHH
Confidence 6788999999999999888765532 11211 1 111 122445677899999999999999
Q ss_pred HHHHHHHHHHhcCCChH-HHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCc
Q 007721 370 AAISEIDRIIVFKLSVD-CLELRAW-LFIAADDYESALRDTLALLALESN 417 (591)
Q Consensus 370 eAl~~~~~al~l~p~~~-~~~~r~~-~~~~~g~~~~A~~d~~~al~l~P~ 417 (591)
+|+..|+.+|-.--... .++.+.. --.-.+..|.....+--++.+.|.
T Consensus 182 DAir~f~~iL~yi~r~k~~~~~~~~q~d~i~K~~eqMyaLlAic~~l~p~ 231 (404)
T PF10255_consen 182 DAIRTFSQILLYIQRTKNQYHQRSYQYDQINKKNEQMYALLAICLSLCPQ 231 (404)
T ss_pred HHHHHHHHHHHHHHHhhhhhccccchhhHHHhHHHHHHHHHHHHHHhCCC
Confidence 99999999984322111 1111111 112234556666666677777775
No 370
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=79.88 E-value=13 Score=38.04 Aligned_cols=64 Identities=16% Similarity=0.095 Sum_probs=53.6
Q ss_pred ChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007721 351 LSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLAL 414 (591)
Q Consensus 351 ~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~-~~~~~~r~~~~~~~g~~~~A~~d~~~al~l 414 (591)
+..++..++..+...|+++.+++.+++.|..+|- -..|...-.+|...|+...|++.|++.-++
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 3456677888999999999999999999999995 455555556899999999999999998885
No 371
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=79.83 E-value=15 Score=36.04 Aligned_cols=96 Identities=20% Similarity=0.147 Sum_probs=66.5
Q ss_pred HHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHHHHHHHHhhcccccHH--HHH----HHHHHhhhcCC
Q 007721 486 LLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFE--AFF----LKAYILADTNL 559 (591)
Q Consensus 486 ~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l~~~~~--~~~----~~~~~~~~~~~ 559 (591)
.|++-|...+|+...+.-++-+|.++.-...+=.+|.-.|++++|+...+-+-.+.|++- +-. .+..++-+.-+
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ea~R~evf 89 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCEAARNEVF 89 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHh
Confidence 567778888888888888888888888777777778888888888888888888888764 111 12222222111
Q ss_pred ----CC---C-chhHHHHHHHHHhcCCCCC
Q 007721 560 ----DP---E-SSTYVIQLLEEALRCPSDG 581 (591)
Q Consensus 560 ----~~---~-~~~~~~~~~~~~~~~~~~~ 581 (591)
-| - -|.--|..|-.||.|-|||
T Consensus 90 ag~~~Pgflg~p~p~wva~L~aala~h~dg 119 (273)
T COG4455 90 AGGAVPGFLGGPSPEWVAALLAALALHSDG 119 (273)
T ss_pred ccCCCCCCcCCCCHHHHHHHHHHHhcccCC
Confidence 11 1 3455667778899999886
No 372
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=79.18 E-value=36 Score=38.98 Aligned_cols=44 Identities=25% Similarity=0.306 Sum_probs=36.9
Q ss_pred CchHHHHHhHHHHHHHcCCHHHHHHHHHHhhcccc-----------cHHHHHHHH
Q 007721 508 SSEHERLVYEGWILYDTGHREEALSRAEKSISIER-----------TFEAFFLKA 551 (591)
Q Consensus 508 p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l~~-----------~~~~~~~~~ 551 (591)
-.-++.|..++.-|-+.|++++|-..|-+||+++- -|++-|+++
T Consensus 992 ~k~~~vhlk~a~~ledegk~edaskhyveaiklntynitwcqavpsrfd~e~ir~ 1046 (1636)
T KOG3616|consen 992 DKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYNITWCQAVPSRFDAEFIRA 1046 (1636)
T ss_pred ccCccchhHHhhhhhhccchhhhhHhhHHHhhcccccchhhhcccchhhHHHHHc
Confidence 34578999999999999999999999999999863 356777765
No 373
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=77.82 E-value=8.9 Score=40.91 Aligned_cols=42 Identities=21% Similarity=0.196 Sum_probs=34.6
Q ss_pred hHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHH
Q 007721 462 SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLA 503 (591)
Q Consensus 462 al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~A 503 (591)
||.-.+|.|.++|....-|.+++.+.-+|.|+-||-+++--|
T Consensus 247 ALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 247 ALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred HHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888888888888888888888888888888888876544
No 374
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=77.69 E-value=71 Score=30.97 Aligned_cols=87 Identities=14% Similarity=0.085 Sum_probs=57.2
Q ss_pred HHhcCCCHHHHHHHHhcCCcHHHHHHHHHHHHcCCC--ChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCC-----ChHH
Q 007721 315 ISEHKPTGWMYQERSLYNLGREKIVDLNYASELDPT--LSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-----SVDC 387 (591)
Q Consensus 315 I~~~~~~g~a~~~r~~y~~~~eA~~dl~~Ai~LdP~--~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p-----~~~~ 387 (591)
.....+-...|+.....+. ++|...|-++.. .|. .++-.+.+|..|. ..+.+.|+.-+.++|++.+ +++.
T Consensus 104 tk~S~dP~llYy~Wsr~~d-~~A~~~fL~~E~-~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~ei 180 (203)
T PF11207_consen 104 TKNSQDPYLLYYHWSRFGD-QEALRRFLQLEG-TPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEI 180 (203)
T ss_pred HccCCCccHHHHHhhccCc-HHHHHHHHHHcC-CCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHH
Confidence 3333444556665544321 456655544433 233 3555666666666 6778999999999999943 4676
Q ss_pred HHHHHHHHHHcCCHHHH
Q 007721 388 LELRAWLFIAADDYESA 404 (591)
Q Consensus 388 ~~~r~~~~~~~g~~~~A 404 (591)
+..++.++..+|+++.|
T Consensus 181 l~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 181 LKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHhcchhhh
Confidence 77788999999999987
No 375
>KOG2723 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=75.84 E-value=7.5 Score=38.14 Aligned_cols=93 Identities=17% Similarity=0.035 Sum_probs=60.1
Q ss_pred CCCc-eEEEEcCeEEEhhHHHHhhc-CHHHHHhhcCCCC--CCCCceeEecCCCCCHHHHHHHHHHHhcCCCCCCCh--h
Q 007721 53 EDDS-VTFCVRDKEISFVRNKIASL-SSPFKAMLYGGFV--ESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCP--G 126 (591)
Q Consensus 53 ~~~~-V~f~v~g~~~~aHr~iLaa~-S~yF~amf~~~~~--Es~~~~I~l~~~~vs~~~~~~ll~ylYtg~~~~~~~--~ 126 (591)
++.+ |.+-|||+-+..-..-|..- -.....||++... -+......| +=+-..|+-||+|+-|..+. ++. .
T Consensus 6 ~~~~~v~lnvGG~~ytt~l~tL~~~~ds~L~~~f~~~~~~~~d~~g~~fI---DRDG~lFRyvL~~LRt~~l~-lpe~f~ 81 (221)
T KOG2723|consen 6 EYPDVVELNVGGAIYTTRLGTLTKFPDSMLARMFSGELPLLRDSKGRYFI---DRDGFLFRYVLDYLRTKALL-LPEDFA 81 (221)
T ss_pred ccCCceeeccCCeEEEeeccceeechHHHHHhhcCCCCCccccccccEEE---cCCcchHHHHHHHhcccccc-cchhhh
Confidence 3445 88889996555433323222 2233566665221 122335666 44567999999999996666 555 6
Q ss_pred HHHHHHHHHhhhChHHHHHHHHH
Q 007721 127 IVLELLSFANRFCCEEMKSACDA 149 (591)
Q Consensus 127 ~v~~lL~~A~~~~i~~L~~~C~~ 149 (591)
++..|..-|++|+++.+...+..
T Consensus 82 e~~~L~rEA~f~~l~~~~~~l~~ 104 (221)
T KOG2723|consen 82 EVERLVREAEFFQLEAPVTYLLN 104 (221)
T ss_pred hHHHHHHHHHHHccccHHHHHhc
Confidence 78999999999999977755443
No 376
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=75.26 E-value=5.8 Score=27.10 Aligned_cols=30 Identities=17% Similarity=0.235 Sum_probs=15.4
Q ss_pred HHHhHHHHHHHcCCHHHHHHH--HHHhhcccc
Q 007721 513 RLVYEGWILYDTGHREEALSR--AEKSISIER 542 (591)
Q Consensus 513 a~~~~G~~l~~~g~~eeAl~~--~e~ai~l~~ 542 (591)
.++.+|-.++.+|++++|+.. |+-+..++|
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 344555555666666666655 434444443
No 377
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=75.25 E-value=57 Score=30.86 Aligned_cols=98 Identities=19% Similarity=0.206 Sum_probs=65.7
Q ss_pred HHHHHhhhHHhhhccHHHHHHHHHHHhhcc----c-cchhhhhHHHHHHhCChHHHHHHHHHHHHhcCCCH-HHHHHHHh
Q 007721 257 LALHQLGCVMFEREEYKDACYYFEAAADAG----H-IYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTG-WMYQERSL 330 (591)
Q Consensus 257 ~a~~~lG~~~~~~g~~~eA~~~f~~Al~~~----~-~~a~~~la~~~~~~G~~~~A~~~~~~aI~~~~~~g-~a~~~r~~ 330 (591)
.++..+|.-+.+.|++++|.++|.++.... | .+.+..+-++.+..|++......++++-..-...| |...+|
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nr-- 114 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNR-- 114 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHH--
Confidence 577889999999999999999999976651 2 23455667778888888777666666544332211 222222
Q ss_pred cCCcHHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHH
Q 007721 331 YNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRII 379 (591)
Q Consensus 331 y~~~~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al 379 (591)
.-..-|..++..++|.+|-..|-.++
T Consensus 115 -----------------------lk~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 115 -----------------------LKVYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred -----------------------HHHHHHHHHHHhchHHHHHHHHHccC
Confidence 12345667777888888888776665
No 378
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=75.22 E-value=8.2 Score=37.79 Aligned_cols=60 Identities=17% Similarity=0.138 Sum_probs=52.0
Q ss_pred HHHHHhCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcch
Q 007721 360 VAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYM 419 (591)
Q Consensus 360 ~~l~~l~~~~eAl~~~~~al~l~p~-~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~ 419 (591)
.-+++.++.++||...+.-++-+|. ..+-+....++.-.|+|+.|+.-++-+-+++|++.
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 3577889999999999999999994 66666677889999999999999999999999984
No 379
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=75.16 E-value=6.4 Score=42.86 Aligned_cols=50 Identities=12% Similarity=0.109 Sum_probs=45.5
Q ss_pred HHHHHHHHcCCCCchhHhhhHHHHHHhCC-HHHHHHHHHHHHhcCCchHHH
Q 007721 464 AVINQMLINDPGKSFLRFRQSLLLLRLNC-QKAAMRCLRLARNHSSSEHER 513 (591)
Q Consensus 464 ~~~~~al~~~P~~~~~~~~~g~~l~~l~~-~~eA~~~~~~Al~l~p~~~~a 513 (591)
.+|.+||...|+++++|..-+.=+.--|. .+.|...+.++|+.+|+++..
T Consensus 126 ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~L 176 (568)
T KOG2396|consen 126 KIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKL 176 (568)
T ss_pred HHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHH
Confidence 37999999999999999999888888777 999999999999999998754
No 380
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=74.67 E-value=97 Score=31.04 Aligned_cols=192 Identities=17% Similarity=0.118 Sum_probs=98.0
Q ss_pred HHhHHHHHHHhCCHHHHHHHHHHHHhc-CC-C--hHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcC-CcchhhhhhchHh
Q 007721 355 YKYRAVAKMEEGQIRAAISEIDRIIVF-KL-S--VDCLELRAW-LFIAADDYESALRDTLALLALE-SNYMMFHGRVSGD 428 (591)
Q Consensus 355 y~~rg~~l~~l~~~~eAl~~~~~al~l-~p-~--~~~~~~r~~-~~~~~g~~~~A~~d~~~al~l~-P~~~~~~~~~~~~ 428 (591)
..++|.+.-+.+||++.+....++++. +| . .+--.+... .....|..-.+.+-+...-+-. .+.-. .....+.
T Consensus 4 ~v~~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt~EERnLLSvayKn~i~~~R~s~R~i~sie~ke~~~~~~-~~~~~~~ 82 (244)
T smart00101 4 NVYMAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNE-DHVASIK 82 (244)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHhhhhcccHHHHHHHhHHHHhhhccCch-HHHHHHH
Confidence 346778888899999999999999987 54 2 343344333 3455666666666665522211 11000 0000011
Q ss_pred HHHHHHHhhhcccCchhhhhhhhhccccccccchHHHHHHHHHcCCCC-----------chhHhhhHHHH---HHhCCHH
Q 007721 429 HLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGK-----------SFLRFRQSLLL---LRLNCQK 494 (591)
Q Consensus 429 ~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~~P~~-----------~~~~~~~g~~l---~~l~~~~ 494 (591)
..+..+...+... | .. + +..++.-|--...+ +++|-.++.+. .+..-.+
T Consensus 83 ~yr~kie~EL~~i----C-~e----------i--l~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~ 145 (244)
T smart00101 83 EYRGKIETELSKI----C-DG----------I--LKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAE 145 (244)
T ss_pred HHHHHHHHHHHHH----H-HH----------H--HHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 1111111111110 0 00 0 22222222222111 23333333332 1112255
Q ss_pred HHHHHHHHHHh-----cCCchHHHH---HhHHHHHH-HcCCHHHHHHHHHHhhcccccHHHHHHHHHHhhhcCCCCCc--
Q 007721 495 AAMRCLRLARN-----HSSSEHERL---VYEGWILY-DTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPES-- 563 (591)
Q Consensus 495 eA~~~~~~Al~-----l~p~~~~a~---~~~G~~l~-~~g~~eeAl~~~e~ai~l~~~~~~~~~~~~~~~~~~~~~~~-- 563 (591)
.|+..|+.|++ +.|.+|-.+ .|.+.-+| -+++.++|.....+|+ -.|.+--|+ |+.++
T Consensus 146 ~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~af----------d~Ai~~ld~-l~ee~y~ 214 (244)
T smart00101 146 NTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAF----------DEAIAELDT-LGEESYK 214 (244)
T ss_pred HHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH----------HHHHHHhhc-cChhhhH
Confidence 78888998875 568887543 22222333 3599999998888774 344444442 33333
Q ss_pred -hhHHHHHHHHHh
Q 007721 564 -STYVIQLLEEAL 575 (591)
Q Consensus 564 -~~~~~~~~~~~~ 575 (591)
|+.++|||-|=|
T Consensus 215 dstlImqLLrDNL 227 (244)
T smart00101 215 DSTLIMQLLRDNL 227 (244)
T ss_pred HHHHHHHHHHHHH
Confidence 788999998755
No 381
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=73.45 E-value=11 Score=39.51 Aligned_cols=86 Identities=13% Similarity=0.071 Sum_probs=56.6
Q ss_pred eEEEEcCeEEEhhHHHHhhcCHHHHHhhcCCCCCC----CCceeEecCCCCCHHHHHHHHHHHhcCCCCCCChhHHHHHH
Q 007721 57 VTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVES----KRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIVLELL 132 (591)
Q Consensus 57 V~f~v~g~~~~aHr~iLaa~S~yF~amf~~~~~Es----~~~~I~l~~~~vs~~~~~~ll~ylYtg~~~~~~~~~v~~lL 132 (591)
+++.|.|++|.-.|.-|- .|=.+++.++-+|= ..++.-+ +-+|++|+.+|+|-.||++...-.+.+..-=
T Consensus 42 lvlNvSGrRFeTWknTLe---ryPdTLLGSsEkeFFy~~dt~eYFF---DRDPdiFRhvLnFYRTGkLHyPR~ECi~AyD 115 (632)
T KOG4390|consen 42 LVLNVSGRRFETWKNTLE---RYPDTLLGSSEKEFFYDEDTGEYFF---DRDPDIFRHVLNFYRTGKLHYPRHECISAYD 115 (632)
T ss_pred EEEeccccchhHHHhHHH---hCchhhhCCcchheeecCCcccccc---cCChHHHHHHHHHhhcCcccCchHHHHHHhh
Confidence 888999999999999873 34466776654432 2234444 6789999999999999999942233332211
Q ss_pred HHHhhhC-hHHHHHHHH
Q 007721 133 SFANRFC-CEEMKSACD 148 (591)
Q Consensus 133 ~~A~~~~-i~~L~~~C~ 148 (591)
+--.+|+ +++|...|+
T Consensus 116 eELaF~Gl~PeligDCC 132 (632)
T KOG4390|consen 116 EELAFYGLVPELIGDCC 132 (632)
T ss_pred hhhhHhcccHHHHhhhh
Confidence 1112344 478877765
No 382
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.21 E-value=77 Score=33.21 Aligned_cols=66 Identities=12% Similarity=0.064 Sum_probs=42.5
Q ss_pred HHHcCCCCh---HHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc
Q 007721 344 ASELDPTLS---FPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESNY 418 (591)
Q Consensus 344 Ai~LdP~~~---~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~ 418 (591)
..+++|... ....+.|.-||++++++.|.-+|+||.+-.-....++ -+..+.|+++.+.+ ..+|++
T Consensus 114 i~~Y~g~~YE~~~~n~YkaLNYm~~nD~~~ArVEfnRan~rQ~~AKe~~--------~~ei~ka~~e~ds~-k~~~N~ 182 (449)
T COG3014 114 VRAYGGNIYEGVLINYYKALNYMLLNDSAKARVEFNRANERQRRAKEFY--------YEEVQKAIKEIDSS-KHNINM 182 (449)
T ss_pred hhhcCchhHHHHHHHHHHHhhHHHhcchhhhHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhc-cCCCch
Confidence 444455443 4567899999999999999999999995432221111 12245566666554 467776
No 383
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=72.57 E-value=14 Score=44.14 Aligned_cols=115 Identities=19% Similarity=0.157 Sum_probs=75.1
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCcchhhhhhchHhH-HHHHHHhhhcccCchhhhhhhhhccccccccchHHHHHHHHHc
Q 007721 394 LFIAADDYESALRDTLALLALESNYMMFHGRVSGDH-LVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLIN 472 (591)
Q Consensus 394 ~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~~~~~-~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~ 472 (591)
++..-+.|+.|+.-|+|+-.--|.-.+ |+.+-.. ....+....++-+.- +...||.-|++ |--
T Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~-~~~ 547 (932)
T PRK13184 484 AFLAEKLYDQALIFYRRIRESFPGRKE--GYEAQFRLGITLLEKASEQGDPR-------------DFTQALSEFSY-LHG 547 (932)
T ss_pred HHHhhHHHHHHHHHHHHHhhcCCCccc--chHHHHHhhHHHHHHHHhcCChH-------------HHHHHHHHHHH-hcC
Confidence 456677788888888888888885432 1111111 111111111111100 10113444443 345
Q ss_pred CCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHc
Q 007721 473 DPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDT 524 (591)
Q Consensus 473 ~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~ 524 (591)
.|+-|.=|..+|+++.++|.++|=+++|..|++.-|+.++.-.-+-.+-|.+
T Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (932)
T PRK13184 548 GVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRL 599 (932)
T ss_pred CCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Confidence 6999999999999999999999999999999999999999888777776654
No 384
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=72.33 E-value=12 Score=42.98 Aligned_cols=66 Identities=20% Similarity=0.170 Sum_probs=46.4
Q ss_pred HHHhHHHHHH--HhCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcch
Q 007721 354 PYKYRAVAKM--EEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYM 419 (591)
Q Consensus 354 ay~~rg~~l~--~l~~~~eAl~~~~~al~l~p~-~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~ 419 (591)
-..+.+..++ .+|++..++.+.+-|+...|. ..++.-|+..|..+++++-|++|.+-....+|++.
T Consensus 93 ~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~ 161 (748)
T KOG4151|consen 93 LRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNV 161 (748)
T ss_pred HHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 3344444444 367788888888888887776 45555677778888888888888777777888763
No 385
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=71.89 E-value=49 Score=40.36 Aligned_cols=167 Identities=13% Similarity=0.064 Sum_probs=102.2
Q ss_pred HHhHHHHHHHhCCHHHHHHHHHHHHhc--------CCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchh--hhh
Q 007721 355 YKYRAVAKMEEGQIRAAISEIDRIIVF--------KLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMM--FHG 423 (591)
Q Consensus 355 y~~rg~~l~~l~~~~eAl~~~~~al~l--------~p~-~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~--~~~ 423 (591)
-...|..-+..|.+.+|.+ +.+++.+ .|. ..++..++.++..+||+++|++.-++|.-+.-...- ...
T Consensus 935 ~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~ 1013 (1236)
T KOG1839|consen 935 SPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPN 1013 (1236)
T ss_pred hhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHH
Confidence 3446667777788888888 5555544 444 566777889999999999999998877665432110 001
Q ss_pred hchHhHHHHHHHhhhcccCchhhhhhhhhccccccccchHHHHHHHHHc--------CCCCchhHhhhHHHHHHhCCHHH
Q 007721 424 RVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLIN--------DPGKSFLRFRQSLLLLRLNCQKA 495 (591)
Q Consensus 424 ~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~--------~P~~~~~~~~~g~~l~~l~~~~e 495 (591)
....+..+.......++... |+..+.+++.+ .|.-+....+.+.++.-++..+-
T Consensus 1014 t~~~y~nlal~~f~~~~~~~------------------al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~ 1075 (1236)
T KOG1839|consen 1014 TKLAYGNLALYEFAVKNLSG------------------ALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADT 1075 (1236)
T ss_pred HHHHhhHHHHHHHhccCccc------------------hhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHH
Confidence 11122222222223332222 46666666654 67777788899999999999999
Q ss_pred HHHHHHHHHhcCCchHH-HHHhHHHHHHHcCCHHHHHHHHHHhhcc
Q 007721 496 AMRCLRLARNHSSSEHE-RLVYEGWILYDTGHREEALSRAEKSISI 540 (591)
Q Consensus 496 A~~~~~~Al~l~p~~~~-a~~~~G~~l~~~g~~eeAl~~~e~ai~l 540 (591)
|++..+.|+..+-.-.. -..--|.++-..++.-++...++.|+..
T Consensus 1076 al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ 1121 (1236)
T KOG1839|consen 1076 ALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEH 1121 (1236)
T ss_pred HHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHH
Confidence 99999999985533211 1112233444445555555555555443
No 386
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=70.37 E-value=20 Score=38.93 Aligned_cols=135 Identities=10% Similarity=0.040 Sum_probs=94.5
Q ss_pred HcCCHHHHHHHHHHHHhcCCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccchHHHHHHHHHcCCCC
Q 007721 397 AADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGK 476 (591)
Q Consensus 397 ~~g~~~~A~~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~~P~~ 476 (591)
.-||.-.|-+-+..+++-.|..+ -..++...+..++.+++.+-+ - ++..+.+|.....-
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p------~~i~l~~~i~~~lg~ye~~~~------~---------~s~~~~~~~s~~~~ 359 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDP------VLIQLRSVIFSHLGYYEQAYQ------D---------ISDVEKIIGTTDST 359 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCc------hhhHHHHHHHHHhhhHHHHHH------H---------hhchhhhhcCCchH
Confidence 56888899999999999888763 345677777788888887732 1 22334444332211
Q ss_pred chhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHHHHHHHHhhcccccH----------HH
Q 007721 477 SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF----------EA 546 (591)
Q Consensus 477 ~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l~~~~----------~~ 546 (591)
.--+=.-+.++||+.+|.......+.-.-.++|....-+-.--.+|-+||++-.+.|.+.|+|.- ..
T Consensus 360 ---~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~~~ 436 (831)
T PRK15180 360 ---LRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSSTQ 436 (831)
T ss_pred ---HHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeeccce
Confidence 11122346789999999999888887777777777666666667899999999999999998843 35
Q ss_pred HHHHHHHhh
Q 007721 547 FFLKAYILA 555 (591)
Q Consensus 547 ~~~~~~~~~ 555 (591)
||+.|-|+.
T Consensus 437 ~~~~~~~~~ 445 (831)
T PRK15180 437 YFNDGNAFS 445 (831)
T ss_pred eccCcchHH
Confidence 777666553
No 387
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=70.01 E-value=3.6e+02 Score=35.58 Aligned_cols=312 Identities=12% Similarity=0.027 Sum_probs=169.0
Q ss_pred HhhhHHhhhccHHHHHHHHHHH-h-hc--cccch-hhhhHHHHHHhCChHHHHHHHHHHHHhcCCC-HHHHHHHHhcCCc
Q 007721 261 QLGCVMFEREEYKDACYYFEAA-A-DA--GHIYS-LAGLARAKYKVGQQYSAYKLINSIISEHKPT-GWMYQERSLYNLG 334 (591)
Q Consensus 261 ~lG~~~~~~g~~~eA~~~f~~A-l-~~--~~~~a-~~~la~~~~~~G~~~~A~~~~~~aI~~~~~~-g~a~~~r~~y~~~ 334 (591)
.++.+-++||.|..|.-++++= . ++ ....+ +..+-.+|...+++++-..-... ....|.+ +....++ ..+..
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~-r~a~~sl~~qil~~e-~~g~~ 1465 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSAR-RFADPSLYQQILEHE-ASGNW 1465 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHH-hhcCccHHHHHHHHH-hhccH
Confidence 5777889999999999888862 1 11 11111 22233356666666543222211 1112222 1222222 22333
Q ss_pred HHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCC-hHHHHHHHH-HHHHcCCHHHHHHH-----
Q 007721 335 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAW-LFIAADDYESALRD----- 407 (591)
Q Consensus 335 ~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~-~~~~~~r~~-~~~~~g~~~~A~~d----- 407 (591)
.+|.++|++++..+|+....+...-......|.++..+...+-.+.=.++ .+.++..+. +--.+++|+.-...
T Consensus 1466 ~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~~~n 1545 (2382)
T KOG0890|consen 1466 ADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLSDRN 1545 (2382)
T ss_pred HHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhhccc
Confidence 88999999999999998888888888888888888888866665544443 333333221 11222222221111
Q ss_pred -----------------------------HHHHHhcCCcchhhhh-----------hchHhHHHHHHHhhhcc-------
Q 007721 408 -----------------------------TLALLALESNYMMFHG-----------RVSGDHLVKLLNHHVRS------- 440 (591)
Q Consensus 408 -----------------------------~~~al~l~P~~~~~~~-----------~~~~~~~~~~l~~~~~~------- 440 (591)
-.|.+.++|--.-..+ +.............+..
T Consensus 1546 ~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~~s~~~~s 1625 (2382)
T KOG0890|consen 1546 IEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSIEELKKVSYDEDS 1625 (2382)
T ss_pred ccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhhccCccccc
Confidence 1111222221111111 00111111111111111
Q ss_pred cCchhhhhhhhhccccccccc-hHHHHHHHH-Hc------CCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHH
Q 007721 441 WSPADCWIKLYDRWSSVDDIG-SLAVINQML-IN------DPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHE 512 (591)
Q Consensus 441 ~~~a~~~~~l~~~~~~~~~~~-al~~~~~al-~~------~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~ 512 (591)
...-+.|....+.-....++. .+-.++|++ +. +-.-++.|.+.|.+=-+-|+++-|...+=.|.+.. -++
T Consensus 1626 ~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~ 1703 (2382)
T KOG0890|consen 1626 ANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPE 1703 (2382)
T ss_pred cccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cch
Confidence 112244555554444433332 122333332 22 34445667777777667999999999999999888 567
Q ss_pred HHHhHHHHHHHcCCHHHHHHHHHHhhcc-ccc------------HHHHHHHHHHhh----hcCCCCCchhHHHHHHHHHh
Q 007721 513 RLVYEGWILYDTGHREEALSRAEKSISI-ERT------------FEAFFLKAYILA----DTNLDPESSTYVIQLLEEAL 575 (591)
Q Consensus 513 a~~~~G~~l~~~g~~eeAl~~~e~ai~l-~~~------------~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 575 (591)
++.-++-.+..+|+-..|+...++.+++ .|+ ..-+|.||.-+- +-+-. .+|.-|+..-.+|.
T Consensus 1704 i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n-~~s~~ilk~Y~~~~ 1782 (2382)
T KOG0890|consen 1704 IVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGN-FESKDILKYYHDAK 1782 (2382)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcc-hhHHHHHHHHHHHH
Confidence 8899999999999999999999999976 444 124444444332 33333 56666666655555
Q ss_pred cC
Q 007721 576 RC 577 (591)
Q Consensus 576 ~~ 577 (591)
-|
T Consensus 1783 ai 1784 (2382)
T KOG0890|consen 1783 AI 1784 (2382)
T ss_pred HH
Confidence 55
No 388
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.70 E-value=68 Score=36.10 Aligned_cols=48 Identities=23% Similarity=0.386 Sum_probs=32.8
Q ss_pred HHHHHcCCHHHHHHHHHHhhcccccH-HHHHHHHHHhhhcCCCCCchhHHHHHHHHHhc
Q 007721 519 WILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALR 576 (591)
Q Consensus 519 ~~l~~~g~~eeAl~~~e~ai~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (591)
.+++.+|++++++....+. +|=. +|||.|-|.. +.-+.|+.|-.+-|.
T Consensus 729 ~~~~l~g~~~~C~~lLi~t---~r~peAal~ArtYlp-------s~vs~iv~~wk~~l~ 777 (794)
T KOG0276|consen 729 LAYFLSGDYEECLELLIST---QRLPEAALFARTYLP-------SQVSRIVELWKEDLS 777 (794)
T ss_pred HHHHHcCCHHHHHHHHHhc---CcCcHHHHHHhhhCh-------HHHHHHHHHHHHHhh
Confidence 4677889999998776554 4444 4999887753 455666666665554
No 389
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=69.60 E-value=11 Score=30.37 Aligned_cols=46 Identities=17% Similarity=0.140 Sum_probs=30.5
Q ss_pred hHHHHHHhCCHHHHH-------HHHHHHHhcCCchHHHHHhHHHHHHHcCCHH
Q 007721 483 QSLLLLRLNCQKAAM-------RCLRLARNHSSSEHERLVYEGWILYDTGHRE 528 (591)
Q Consensus 483 ~g~~l~~l~~~~eA~-------~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~e 528 (591)
+|.-+.+.|++++|+ +.+.+++.+.||++-...+++-+.-.+.|.+
T Consensus 12 ~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~eY~~Rae 64 (75)
T cd02682 12 NAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQMINEYKRRIE 64 (75)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHH
Confidence 333444555555555 4555556788999999999988887776654
No 390
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=68.45 E-value=15 Score=37.48 Aligned_cols=57 Identities=19% Similarity=0.028 Sum_probs=47.6
Q ss_pred HhHHHHHHHhCCHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007721 356 KYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALL 412 (591)
Q Consensus 356 ~~rg~~l~~l~~~~eAl~~~~~al~l~p-~~~~~~~r~~~~~~~g~~~~A~~d~~~al 412 (591)
...+..+.+-|.+.+|+...+|++.++| +-..+...-.++..+||--.|+..|++--
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 4456788899999999999999999999 45556667778999999999999887643
No 391
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=68.19 E-value=36 Score=32.26 Aligned_cols=63 Identities=14% Similarity=0.001 Sum_probs=35.7
Q ss_pred HHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCCh----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 007721 353 FPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSV----DCLELRAWLFIAADDYESALRDTLALLALE 415 (591)
Q Consensus 353 ~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~~----~~~~~r~~~~~~~g~~~~A~~d~~~al~l~ 415 (591)
.+|..+|.-|.+.|++++|+..|.++.....++ +.+...-.+....||+..+.....+|-.+-
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~ 103 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLI 103 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 345566666666666666666666666554332 222223345556666666666666665543
No 392
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.47 E-value=52 Score=37.19 Aligned_cols=99 Identities=15% Similarity=0.022 Sum_probs=76.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccchHHHHHHH
Q 007721 390 LRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQM 469 (591)
Q Consensus 390 ~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~a 469 (591)
+.+.-+.+.++|..+++.|...+.--|.+.+ . +++
T Consensus 359 n~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~--~----------------------------------~~F--------- 393 (872)
T KOG4814|consen 359 NTAKKLFKMEKYVVSIRFYKLSLKDIISDNY--S----------------------------------DRF--------- 393 (872)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhccchhh--h----------------------------------hHH---------
Confidence 3456789999999999999999998887631 0 000
Q ss_pred HHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHHHHHHHHhhcc
Q 007721 470 LINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISI 540 (591)
Q Consensus 470 l~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l 540 (591)
+...-++..+++.+...+.|.+.++.|=+++|.++--..+.--+..-.|.-++|++..-+..++
T Consensus 394 -------aK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 394 -------AKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred -------HHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence 1223345568888888899999999999999999988888888888899999999887766554
No 393
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.37 E-value=41 Score=39.09 Aligned_cols=130 Identities=15% Similarity=0.134 Sum_probs=74.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh-cCCcchh--hhhhc----hHhHHHHHHHhhhcccCchhhhhhhhhccccccccchHH
Q 007721 392 AWLFIAADDYESALRDTLALLA-LESNYMM--FHGRV----SGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLA 464 (591)
Q Consensus 392 ~~~~~~~g~~~~A~~d~~~al~-l~P~~~~--~~~~~----~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~ 464 (591)
|.-+...||+++|+..|-+.+- ++|.+++ |.-.- -+.++..+.+.-..+-+.-..++..|-++..++..
T Consensus 375 gd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL---- 450 (933)
T KOG2114|consen 375 GDYLYGKGDFDEATDQYIETIGFLEPSEVIKKFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKL---- 450 (933)
T ss_pred HHHHHhcCCHHHHHHHHHHHcccCChHHHHHHhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHH----
Confidence 4567778888888888887776 6776654 21111 14444455555555566666677888887776433
Q ss_pred HHHHHHHcCCCCchhHhh--hH-HHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHHHHHHH
Q 007721 465 VINQMLINDPGKSFLRFR--QS-LLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAE 535 (591)
Q Consensus 465 ~~~~al~~~P~~~~~~~~--~g-~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~~e 535 (591)
+.-+...| .++..|. .+ .++.+-|..++|+....+.-. --+++-.++-++|+|+||++..+
T Consensus 451 --~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~-------he~vl~ille~~~ny~eAl~yi~ 514 (933)
T KOG2114|consen 451 --TEFISKCD-KGEWFFDVETALEILRKSNYLDEAELLATKFKK-------HEWVLDILLEDLHNYEEALRYIS 514 (933)
T ss_pred --HHHHhcCC-CcceeeeHHHHHHHHHHhChHHHHHHHHHHhcc-------CHHHHHHHHHHhcCHHHHHHHHh
Confidence 23333333 2222211 11 134456777777665444322 22566677888899999996543
No 394
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=65.89 E-value=75 Score=34.06 Aligned_cols=176 Identities=14% Similarity=0.021 Sum_probs=90.0
Q ss_pred HHHHHHhhhhccccchhHHHHHHHHhhcchhhhHH---HHHHHHhhhHHhhhccHHHHHHHHHHHhhc----ccc-chhh
Q 007721 221 YYFLSQVAMEKDRVSNTTVMLLERLGECSTERWQR---MLALHQLGCVMFEREEYKDACYYFEAAADA----GHI-YSLA 292 (591)
Q Consensus 221 ~a~Ls~v~~d~~~r~~~~v~lLe~~~~~~~~~~~~---~~a~~~lG~~~~~~g~~~eA~~~f~~Al~~----~~~-~a~~ 292 (591)
..-..||.-+... .....+-|+..++...+..-+ ..++..+|.-|..+|+++.|+++|.++=.- +|. ..+.
T Consensus 113 ~~D~~WvE~~~~~-a~~~le~L~~eLk~yK~n~iKEsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~l 191 (466)
T KOG0686|consen 113 LLDEKWVETNNKK-AVLKLEKLDNELKSYKDNLIKESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCL 191 (466)
T ss_pred ccchHHHHHhhHH-HHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHH
Confidence 3445566644333 222333444434433333322 257788999999999999999999884222 121 2334
Q ss_pred hhHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHhcCCcHHHHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHH
Q 007721 293 GLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAI 372 (591)
Q Consensus 293 ~la~~~~~~G~~~~A~~~~~~aI~~~~~~g~a~~~r~~y~~~~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl 372 (591)
++-+|-+..|++..-....+++.+-- .+ . -+.+-+.. +..+..-|.+...+++|..|.
T Consensus 192 n~i~VSI~~~nw~hv~sy~~~A~st~--~~-----~------------~~~~q~v~---~kl~C~agLa~L~lkkyk~aa 249 (466)
T KOG0686|consen 192 NLILVSIYMGNWGHVLSYISKAESTP--DA-----N------------ENLAQEVP---AKLKCAAGLANLLLKKYKSAA 249 (466)
T ss_pred HHHHHHHhhcchhhhhhHHHHHHhCc--hh-----h------------hhHHHhcC---cchHHHHHHHHHHHHHHHHHH
Confidence 44455556666544433333333221 00 0 01111221 225556677788888999999
Q ss_pred HHHHHHHhc--------CCCh-HHHHHH-HHHHHHcCCHH---HHHHHHHHHHhcCCcch
Q 007721 373 SEIDRIIVF--------KLSV-DCLELR-AWLFIAADDYE---SALRDTLALLALESNYM 419 (591)
Q Consensus 373 ~~~~~al~l--------~p~~-~~~~~r-~~~~~~~g~~~---~A~~d~~~al~l~P~~~ 419 (591)
..|-.+..- .|.. ..|... +.+-....++. ..-..|+.-++++|+-.
T Consensus 250 ~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel~Pqlr 309 (466)
T KOG0686|consen 250 KYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLELEPQLR 309 (466)
T ss_pred HHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhcChHHH
Confidence 887666432 2321 112111 11212222222 22345888888999754
No 395
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.85 E-value=90 Score=29.71 Aligned_cols=51 Identities=16% Similarity=0.163 Sum_probs=29.8
Q ss_pred hhhccHHHHHHHHHHHhhccc----cchhhhhHHHHHHhCChHHHHHHHHHHHHh
Q 007721 267 FEREEYKDACYYFEAAADAGH----IYSLAGLARAKYKVGQQYSAYKLINSIISE 317 (591)
Q Consensus 267 ~~~g~~~eA~~~f~~Al~~~~----~~a~~~la~~~~~~G~~~~A~~~~~~aI~~ 317 (591)
...++-++|...|...-+-++ .-+..-.+.++...|+...|+..|+.+-..
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d 123 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD 123 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc
Confidence 334556777777754322222 223334455777788888888877776544
No 396
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.51 E-value=14 Score=42.60 Aligned_cols=78 Identities=23% Similarity=0.249 Sum_probs=55.9
Q ss_pred HHHHhCCHHHHHHHHHHHHhcCCch-HHHHHhHHHHHHHcCCHHHHHHHHHHhhc-ccccHH-HHHHHHHHhhhcCCCCC
Q 007721 486 LLLRLNCQKAAMRCLRLARNHSSSE-HERLVYEGWILYDTGHREEALSRAEKSIS-IERTFE-AFFLKAYILADTNLDPE 562 (591)
Q Consensus 486 ~l~~l~~~~eA~~~~~~Al~l~p~~-~~a~~~~G~~l~~~g~~eeAl~~~e~ai~-l~~~~~-~~~~~~~~~~~~~~~~~ 562 (591)
.+.+.+-++-|+...+. ..++|+. ++.+...|-.||..|+|++|...|-++|. ++||+. -+| ||++
T Consensus 343 iL~kK~ly~~Ai~LAk~-~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kf----------Ldaq 411 (933)
T KOG2114|consen 343 ILFKKNLYKVAINLAKS-QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKF----------LDAQ 411 (933)
T ss_pred HHHHhhhHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHh----------cCHH
Confidence 45666667766655432 2333433 57788999999999999999999999998 599988 666 5555
Q ss_pred chhHHHHHHHHH
Q 007721 563 SSTYVIQLLEEA 574 (591)
Q Consensus 563 ~~~~~~~~~~~~ 574 (591)
.=...+..||.-
T Consensus 412 ~IknLt~YLe~L 423 (933)
T KOG2114|consen 412 RIKNLTSYLEAL 423 (933)
T ss_pred HHHHHHHHHHHH
Confidence 555566666543
No 397
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=64.76 E-value=10 Score=31.00 Aligned_cols=34 Identities=26% Similarity=0.226 Sum_probs=23.0
Q ss_pred CCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007721 366 GQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLA 413 (591)
Q Consensus 366 ~~~~eAl~~~~~al~l~p~~~~~~~r~~~~~~~g~~~~A~~d~~~al~ 413 (591)
+-|+.|.+.+++||..+ +.|+.++|+..|+++++
T Consensus 3 ~~~~~A~~~I~kaL~~d--------------E~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 3 GYYKQAFEEISKALRAD--------------EWGDKEQALAHYRKGLR 36 (79)
T ss_pred hHHHHHHHHHHHHhhhh--------------hcCCHHHHHHHHHHHHH
Confidence 34677777777777554 33677777777777765
No 398
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=64.32 E-value=1.9e+02 Score=30.29 Aligned_cols=106 Identities=16% Similarity=0.075 Sum_probs=51.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccc----hHHHHH
Q 007721 392 AWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIG----SLAVIN 467 (591)
Q Consensus 392 ~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~----al~~~~ 467 (591)
+++-.++|+..+|++-++...+--|-..|+..+. + +++..++-..-||+. ..+.++||+. |..+|.
T Consensus 282 AMCARklGrlrEA~K~~RDL~ke~pl~t~lnihe---N---LiEalLE~QAYADvq----avLakYDdislPkSA~icYT 351 (556)
T KOG3807|consen 282 AMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHE---N---LLEALLELQAYADVQ----AVLAKYDDISLPKSAAICYT 351 (556)
T ss_pred HHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHH---H---HHHHHHHHHHHHHHH----HHHHhhccccCcchHHHHHH
Confidence 4566777777777777777776666332222211 1 112222222223221 1222234443 233444
Q ss_pred HHHHc-----CCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchH
Q 007721 468 QMLIN-----DPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEH 511 (591)
Q Consensus 468 ~al~~-----~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~ 511 (591)
.||-. +-=.++.-.++|+.-..++ |++.+.+|.+.||+-+
T Consensus 352 aALLK~RAVa~kFspd~asrRGLS~AE~~----AvEAihRAvEFNPHVP 396 (556)
T KOG3807|consen 352 AALLKTRAVSEKFSPETASRRGLSTAEIN----AVEAIHRAVEFNPHVP 396 (556)
T ss_pred HHHHHHHHHHhhcCchhhhhccccHHHHH----HHHHHHHHhhcCCCCc
Confidence 44321 1224455555665555443 6666778888888754
No 399
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.47 E-value=2.1e+02 Score=34.49 Aligned_cols=181 Identities=15% Similarity=0.091 Sum_probs=96.9
Q ss_pred HHHHHcCCCChHHHHhH---------HHHHHHhCCHHHHHHHH--------------------HHHHhcCC--C-hHHHH
Q 007721 342 NYASELDPTLSFPYKYR---------AVAKMEEGQIRAAISEI--------------------DRIIVFKL--S-VDCLE 389 (591)
Q Consensus 342 ~~Ai~LdP~~~~ay~~r---------g~~l~~l~~~~eAl~~~--------------------~~al~l~p--~-~~~~~ 389 (591)
-+|++.||+-.--|.+| |.+-...+-|+||.+.| +||-++.- + +..|.
T Consensus 1029 LtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWs 1108 (1666)
T KOG0985|consen 1029 LTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWS 1108 (1666)
T ss_pred HHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHH
Confidence 34666666655555553 55555666677776654 44544432 2 56677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCcchhh----hhhch-----HhHHHHHHHhhhcccCchhhhhhhhhcccccccc
Q 007721 390 LRAWLFIAADDYESALRDTLALLALESNYMMF----HGRVS-----GDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDI 460 (591)
Q Consensus 390 ~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~----~~~~~-----~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~ 460 (591)
..|.+..+.|...+|+..|-+| -||...+= -.+.. ...+++.-....+-+-+. .+.-.+....+
T Consensus 1109 qlakAQL~~~~v~dAieSyika--dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~----eLi~AyAkt~r- 1181 (1666)
T KOG0985|consen 1109 QLAKAQLQGGLVKDAIESYIKA--DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS----ELIFAYAKTNR- 1181 (1666)
T ss_pred HHHHHHHhcCchHHHHHHHHhc--CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH----HHHHHHHHhch-
Confidence 7888899999999999999876 45644220 01111 111111111111111111 00000000010
Q ss_pred chHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHHHHHHHHhhcc
Q 007721 461 GSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISI 540 (591)
Q Consensus 461 ~al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l 540 (591)
+..++. +-..|+.+..- ..|.-...-|.+++|.-.|. +..-+-.++..|-.+|+|+.|+...++|-++
T Consensus 1182 --l~elE~-fi~gpN~A~i~-~vGdrcf~~~~y~aAkl~y~--------~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ 1249 (1666)
T KOG0985|consen 1182 --LTELEE-FIAGPNVANIQ-QVGDRCFEEKMYEAAKLLYS--------NVSNFAKLASTLVYLGEYQGAVDAARKANST 1249 (1666)
T ss_pred --HHHHHH-HhcCCCchhHH-HHhHHHhhhhhhHHHHHHHH--------HhhhHHHHHHHHHHHHHHHHHHHHhhhccch
Confidence 111111 12346655543 34555555566666655554 3344556788899999999999999999876
Q ss_pred c
Q 007721 541 E 541 (591)
Q Consensus 541 ~ 541 (591)
.
T Consensus 1250 k 1250 (1666)
T KOG0985|consen 1250 K 1250 (1666)
T ss_pred h
Confidence 4
No 400
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=63.40 E-value=12 Score=37.08 Aligned_cols=34 Identities=21% Similarity=0.064 Sum_probs=24.2
Q ss_pred hhHhhhHHHHH---------HhCCHHHHHHHHHHHHhcCCchH
Q 007721 478 FLRFRQSLLLL---------RLNCQKAAMRCLRLARNHSSSEH 511 (591)
Q Consensus 478 ~~~~~~g~~l~---------~l~~~~eA~~~~~~Al~l~p~~~ 511 (591)
.+|--.|.+++ ..+.++.|+..+++|++++|+-+
T Consensus 170 Kl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~G 212 (230)
T PHA02537 170 KLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCG 212 (230)
T ss_pred HHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCC
Confidence 34444566663 34677889999999999998854
No 401
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=61.34 E-value=3.3 Score=42.72 Aligned_cols=42 Identities=14% Similarity=0.131 Sum_probs=38.7
Q ss_pred hcCCHHhHHHHHHHHHHhChHHHHHHHHHHHHhhhHhhhCCcc
Q 007721 154 LVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPK 196 (591)
Q Consensus 154 ~i~~~~n~~~ll~~A~~~~~~~L~~~c~~~i~~n~~~v~~~~~ 196 (591)
.++ ++|++.|+--+.......|.+.|++|+..|+.+++.++-
T Consensus 71 ~l~-~~NvvsIliSS~FL~M~~Lve~cl~y~~~~~~~Iv~~~~ 112 (317)
T PF11822_consen 71 SLT-PSNVVSILISSEFLQMESLVEECLQYCHDHMSEIVASPC 112 (317)
T ss_pred cCC-cCcEEEeEehhhhhccHHHHHHHHHHHHHhHHHHHcCCC
Confidence 456 799999999999999999999999999999999998764
No 402
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=61.21 E-value=8.9 Score=39.38 Aligned_cols=49 Identities=10% Similarity=0.054 Sum_probs=44.1
Q ss_pred HHHHHHHcCCCCchhHhh-hHHHHHHhCCHHHHHHHHHHHHhcCCchHHH
Q 007721 465 VINQMLINDPGKSFLRFR-QSLLLLRLNCQKAAMRCLRLARNHSSSEHER 513 (591)
Q Consensus 465 ~~~~al~~~P~~~~~~~~-~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a 513 (591)
++.++|...|.++++|.. -+.-+.-.+..+.+...+.++++++|+++-.
T Consensus 129 I~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~i 178 (435)
T COG5191 129 IFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRI 178 (435)
T ss_pred HHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchH
Confidence 689999999999999988 6677788999999999999999999998754
No 403
>PF12854 PPR_1: PPR repeat
Probab=60.99 E-value=19 Score=23.94 Aligned_cols=29 Identities=10% Similarity=-0.128 Sum_probs=18.6
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007721 382 KLSVDCLELRAWLFIAADDYESALRDTLA 410 (591)
Q Consensus 382 ~p~~~~~~~r~~~~~~~g~~~~A~~d~~~ 410 (591)
.||.-.|...-..+.+.|+.++|++-|++
T Consensus 4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 4 EPDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CCcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 56655555566666777777777766653
No 404
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=60.85 E-value=30 Score=42.05 Aligned_cols=154 Identities=15% Similarity=0.176 Sum_probs=94.1
Q ss_pred HHHhhhHHhhhccHHHHHHHHHHHhhc-------ccc---chhhhhHHHHHHhCChHHHHHHHHHHHHhc--------CC
Q 007721 259 LHQLGCVMFEREEYKDACYYFEAAADA-------GHI---YSLAGLARAKYKVGQQYSAYKLINSIISEH--------KP 320 (591)
Q Consensus 259 ~~~lG~~~~~~g~~~eA~~~f~~Al~~-------~~~---~a~~~la~~~~~~G~~~~A~~~~~~aI~~~--------~~ 320 (591)
....|......+.+.+|.+ ..+++.. -|+ ..+..+++++...|++++|+..-.++.-.. |+
T Consensus 935 ~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~ 1013 (1236)
T KOG1839|consen 935 SPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPN 1013 (1236)
T ss_pred hhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHH
Confidence 4456666666777777766 3333333 122 246678889999999999988866653321 23
Q ss_pred CHHHHHHHHhcCCc----HHHHHHHHHHHHc--------CCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCC----
Q 007721 321 TGWMYQERSLYNLG----REKIVDLNYASEL--------DPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS---- 384 (591)
Q Consensus 321 ~g~a~~~r~~y~~~----~eA~~dl~~Ai~L--------dP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~---- 384 (591)
-...|.+...|..+ ..|+..+.+|..+ -|.-+..-.+.+.++..+++++-|+.....|++++-.
T Consensus 1014 t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~ 1093 (1236)
T KOG1839|consen 1014 TKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGP 1093 (1236)
T ss_pred HHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCc
Confidence 33444444433211 4566666666544 5666677788999999999999999999999886432
Q ss_pred -----hHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007721 385 -----VDCLELRAWLFIAADDYESALRDTLALLA 413 (591)
Q Consensus 385 -----~~~~~~r~~~~~~~g~~~~A~~d~~~al~ 413 (591)
..++...+.++..+|++..|+........
T Consensus 1094 ~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~ 1127 (1236)
T KOG1839|consen 1094 KELETALSYHALARLFESMKDFRNALEHEKVTYG 1127 (1236)
T ss_pred cchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHH
Confidence 12233344555555555555555554443
No 405
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=57.67 E-value=16 Score=37.64 Aligned_cols=85 Identities=6% Similarity=0.045 Sum_probs=74.7
Q ss_pred HHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHh-HHHHHHHcCCHHHHHHHHHHhhccccc
Q 007721 465 VINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVY-EGWILYDTGHREEALSRAEKSISIERT 543 (591)
Q Consensus 465 ~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~-~G~~l~~~g~~eeAl~~~e~ai~l~~~ 543 (591)
.+.|+----|+++..|..-+.--.+.|-+.+--..|.+++...|.|++.+.+ ...=+.--++++.+-+.+.++++++|.
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~ 174 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR 174 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence 4677788889999999998888888999999999999999999999999888 666678889999999999999999887
Q ss_pred HH----HHHH
Q 007721 544 FE----AFFL 549 (591)
Q Consensus 544 ~~----~~~~ 549 (591)
.. +||-
T Consensus 175 ~p~iw~eyfr 184 (435)
T COG5191 175 SPRIWIEYFR 184 (435)
T ss_pred CchHHHHHHH
Confidence 64 5553
No 406
>PRK11619 lytic murein transglycosylase; Provisional
Probab=57.09 E-value=3.6e+02 Score=31.16 Aligned_cols=283 Identities=12% Similarity=0.011 Sum_probs=140.8
Q ss_pred HHhhhHHhhhccHHHHHHHHHHHhhccccchhhhhHHHHHHhCChHHHHHHHHHHHHhcCCCHHHHHHHHhcCC---cHH
Q 007721 260 HQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNL---GRE 336 (591)
Q Consensus 260 ~~lG~~~~~~g~~~eA~~~f~~Al~~~~~~a~~~la~~~~~~G~~~~A~~~~~~aI~~~~~~g~a~~~r~~y~~---~~e 336 (591)
+.-+...+..|++.++...-. .+.-.+...+.....+....+. .....+...+..+|+.+..-.-|..+.. ...
T Consensus 37 f~~A~~a~~~g~~~~~~~~~~-~l~d~pL~~yl~y~~L~~~l~~--~~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~ 113 (644)
T PRK11619 37 YQQIKQAWDNRQMDVVEQLMP-TLKDYPLYPYLEYRQLTQDLMN--QPAVQVTNFIRANPTLPPARSLQSRFVNELARRE 113 (644)
T ss_pred HHHHHHHHHCCCHHHHHHHHH-hccCCCcHhHHHHHHHHhcccc--CCHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcc
Confidence 344455566666666543332 2222233333333332222222 1244677778888876666555543311 123
Q ss_pred HHHHHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcC---CCh----------------HHHHHHHHHHHH
Q 007721 337 KIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFK---LSV----------------DCLELRAWLFIA 397 (591)
Q Consensus 337 A~~dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~---p~~----------------~~~~~r~~~~~~ 397 (591)
.+.+|.+.-.-.|.........+.++...|+.++|.+...++.-.. |+. +.+..|......
T Consensus 114 ~w~~~~~~~~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~ 193 (644)
T PRK11619 114 DWRGLLAFSPEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQSGKQDPLAYLERIRLAMK 193 (644)
T ss_pred CHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 3444444332348888888889999999999999988888886543 221 111223334445
Q ss_pred cCCHHHHHHHHH-------------HHHhcCCcchh-hhhhc--h----HhHHHHHHHhhhcccCchhhhhhhhhccccc
Q 007721 398 ADDYESALRDTL-------------ALLALESNYMM-FHGRV--S----GDHLVKLLNHHVRSWSPADCWIKLYDRWSSV 457 (591)
Q Consensus 398 ~g~~~~A~~d~~-------------~al~l~P~~~~-~~~~~--~----~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~ 457 (591)
.|+...|....+ .++.-+|.... ..... . -....+..+...++.+.|..+..-.......
T Consensus 194 ~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~ 273 (644)
T PRK11619 194 AGNTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFARTTGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKL 273 (644)
T ss_pred CCCHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhccCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCC
Confidence 555554443322 23333443222 00000 0 0011111122333333332211111000000
Q ss_pred c--------------------ccchHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhH
Q 007721 458 D--------------------DIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYE 517 (591)
Q Consensus 458 ~--------------------~~~al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~ 517 (591)
. +..+...++.+. ..+.+.+.+-.+-.+-.+.++.+.+...+...-.-..+....+|.+
T Consensus 274 ~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~-~~~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~ 352 (644)
T PRK11619 274 NEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVI-MRSQSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQ 352 (644)
T ss_pred CHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcc-cccCCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHH
Confidence 0 111111122111 1112233333333344478888877777776444344567889999
Q ss_pred HHHHHHcCCHHHHHHHHHHhhcccccHHHH
Q 007721 518 GWILYDTGHREEALSRAEKSISIERTFEAF 547 (591)
Q Consensus 518 G~~l~~~g~~eeAl~~~e~ai~l~~~~~~~ 547 (591)
|-.+..+|+-++|-..|+++.. .++|=.|
T Consensus 353 aRa~~~~g~~~~A~~~~~~~a~-~~~fYG~ 381 (644)
T PRK11619 353 ADLLLEQGRKAEAEEILRQLMQ-QRGFYPM 381 (644)
T ss_pred HHHHHHcCCHHHHHHHHHHHhc-CCCcHHH
Confidence 9999999999999999999854 6776444
No 407
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=55.91 E-value=25 Score=33.58 Aligned_cols=51 Identities=16% Similarity=0.028 Sum_probs=42.4
Q ss_pred CHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Q 007721 367 QIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESN 417 (591)
Q Consensus 367 ~~~eAl~~~~~al~l~p~~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~ 417 (591)
..+..++...+.+...|++..+...+.++...||.++|.+..+++..+-|.
T Consensus 126 ~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 126 MLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 345566777788888898888888888999999999999999999999994
No 408
>PRK11619 lytic murein transglycosylase; Provisional
Probab=54.85 E-value=3.9e+02 Score=30.88 Aligned_cols=172 Identities=12% Similarity=0.063 Sum_probs=106.0
Q ss_pred HHHHhCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhhchHhHHHHHHHhhhc
Q 007721 361 AKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVR 439 (591)
Q Consensus 361 ~l~~l~~~~eAl~~~~~al~l~p~-~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~ 439 (591)
+-+..++.+.+...+++.-.-.-+ ....|-+|.++.++|+-++|...|+++.. .. .|||..++..+........
T Consensus 321 ~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~-~~---~fYG~LAa~~Lg~~~~~~~- 395 (644)
T PRK11619 321 MALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ-QR---GFYPMVAAQRLGEEYPLKI- 395 (644)
T ss_pred HHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc-CC---CcHHHHHHHHcCCCCCCCC-
Confidence 334788888777666663221112 34456677787889999999999999855 32 3788777666432100000
Q ss_pred ccCchhhhhhhhhccccccccchHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHH
Q 007721 440 SWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGW 519 (591)
Q Consensus 440 ~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~ 519 (591)
... . . -.+.+...| -..++..|..+|...+|.+-.+.+++. .+ .+-+...+.
T Consensus 396 --~~~-------------~----~--~~~~~~~~~-----~~~ra~~L~~~g~~~~a~~ew~~~~~~-~~-~~~~~~la~ 447 (644)
T PRK11619 396 --DKA-------------P----K--PDSALTQGP-----EMARVRELMYWNMDNTARSEWANLVAS-RS-KTEQAQLAR 447 (644)
T ss_pred --CCC-------------C----c--hhhhhccCh-----HHHHHHHHHHCCCHHHHHHHHHHHHhc-CC-HHHHHHHHH
Confidence 000 0 0 112222222 356888999999999999999888876 33 445566777
Q ss_pred HHHHcCCHHHHHHHHHHhhcc-----------cccHH---------HHHHHHHHhhhcCCCCCchh
Q 007721 520 ILYDTGHREEALSRAEKSISI-----------ERTFE---------AFFLKAYILADTNLDPESST 565 (591)
Q Consensus 520 ~l~~~g~~eeAl~~~e~ai~l-----------~~~~~---------~~~~~~~~~~~~~~~~~~~~ 565 (591)
+-.+.|.++-|+....++-.. .+.|+ .-++.|++--.|+.||..-|
T Consensus 448 ~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~~~lv~ai~rqES~f~p~a~S 513 (644)
T PRK11619 448 YAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIPQSYAMAIARQESAWNPKARS 513 (644)
T ss_pred HHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCcc
Confidence 777888888887665544221 11111 24556777788999987533
No 409
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=54.58 E-value=98 Score=30.73 Aligned_cols=36 Identities=14% Similarity=0.154 Sum_probs=26.1
Q ss_pred HcCCHHHHHHHHHHHHhcCCcchhhhhhchHhHHHHHHHhhhc
Q 007721 397 AADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVR 439 (591)
Q Consensus 397 ~~g~~~~A~~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~ 439 (591)
..++...|+..+++|++++|+ .++......+...++
T Consensus 190 d~~~l~~Al~~L~rA~~l~~k-------~GVK~~i~~l~~~lr 225 (230)
T PHA02537 190 DAETLQLALALLQRAFQLNDK-------CGVKKDIERLERRLK 225 (230)
T ss_pred CcccHHHHHHHHHHHHHhCCC-------CChHHHHHHHHHHHh
Confidence 556888999999999999997 455555555544443
No 410
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=54.15 E-value=35 Score=37.02 Aligned_cols=51 Identities=10% Similarity=0.046 Sum_probs=40.6
Q ss_pred HHHHHhCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007721 360 VAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLA 410 (591)
Q Consensus 360 ~~l~~l~~~~eAl~~~~~al~l~p~~~~~~~r~~~~~~~g~~~~A~~d~~~ 410 (591)
.-+...|+|.++.-.-.=..+++|++.++.+.|.++...++|++|...+..
T Consensus 470 EyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 470 EYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 345667888888887777778888888888888888888888888877764
No 411
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=53.34 E-value=25 Score=25.21 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=11.3
Q ss_pred hHHHHHHHhCCHHHHHHHHHHHH
Q 007721 357 YRAVAKMEEGQIRAAISEIDRII 379 (591)
Q Consensus 357 ~rg~~l~~l~~~~eAl~~~~~al 379 (591)
++|.+|+++|+.+.|...++.++
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHH
Confidence 34444555555555555555444
No 412
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=52.82 E-value=2.2e+02 Score=32.54 Aligned_cols=173 Identities=14% Similarity=0.051 Sum_probs=85.7
Q ss_pred HHhCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCHHHHHHHHH------HHHhcCCcchh------hhhhchHhHH
Q 007721 363 MEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTL------ALLALESNYMM------FHGRVSGDHL 430 (591)
Q Consensus 363 ~~l~~~~eAl~~~~~al~l~p~~~~~~~r~~~~~~~g~~~~A~~d~~------~al~l~P~~~~------~~~~~~~~~~ 430 (591)
.+--++-+-+.++++.-+ +...+.-.+++..+.-.|++.||-+.|. ||+++--|..| |.+.+.....
T Consensus 611 VRdl~~L~li~EL~~~k~-rge~P~~iLlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eK 689 (1081)
T KOG1538|consen 611 VRDLRYLELISELEERKK-RGETPNDLLLADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEK 689 (1081)
T ss_pred HhccHHHHHHHHHHHHHh-cCCCchHHHHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHH
Confidence 333344444444444432 2222223567777777888888888774 57777666655 2332222222
Q ss_pred HHHHHh-------hhcccCchhhhhhhhhcccccc---ccc-hHHHHHHHHHcCCCCchhHhhhHHH-------------
Q 007721 431 VKLLNH-------HVRSWSPADCWIKLYDRWSSVD---DIG-SLAVINQMLINDPGKSFLRFRQSLL------------- 486 (591)
Q Consensus 431 ~~~l~~-------~~~~~~~a~~~~~l~~~~~~~~---~~~-al~~~~~al~~~P~~~~~~~~~g~~------------- 486 (591)
.++++. ..+--..|+.++..++..+..+ |.+ +-..++-+-.++-..-+..-..+.-
T Consensus 690 KmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeI 769 (1081)
T KOG1538|consen 690 KMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEI 769 (1081)
T ss_pred HHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHH
Confidence 222211 1122223444444444433331 111 1112333333333333333323322
Q ss_pred HHH-------------hCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHHHHHHHHhhc
Q 007721 487 LLR-------------LNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSIS 539 (591)
Q Consensus 487 l~~-------------l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~ 539 (591)
+.+ .+++.||.+..++-=+.- .+.|+-.|.-|...++|+||-+.|.||-+
T Consensus 770 F~k~gD~ksiVqlHve~~~W~eAFalAe~hPe~~---~dVy~pyaqwLAE~DrFeEAqkAfhkAGr 832 (1081)
T KOG1538|consen 770 FLKMGDLKSLVQLHVETQRWDEAFALAEKHPEFK---DDVYMPYAQWLAENDRFEEAQKAFHKAGR 832 (1081)
T ss_pred HHHhccHHHHhhheeecccchHhHhhhhhCcccc---ccccchHHHHhhhhhhHHHHHHHHHHhcc
Confidence 233 334445544444433333 34678889999999999999999988865
No 413
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=52.66 E-value=19 Score=29.12 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=15.2
Q ss_pred HHhHHHHHHHhCCHHHHHHHHHHHH
Q 007721 355 YKYRAVAKMEEGQIRAAISEIDRII 379 (591)
Q Consensus 355 y~~rg~~l~~l~~~~eAl~~~~~al 379 (591)
|..+|.-+-..|++++|+..|+.+|
T Consensus 9 ~a~~AVe~D~~gr~~eAi~~Y~~aI 33 (75)
T cd02682 9 YAINAVKAEKEGNAEDAITNYKKAI 33 (75)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 4445555555677777766666665
No 414
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=51.91 E-value=37 Score=32.37 Aligned_cols=45 Identities=22% Similarity=0.188 Sum_probs=32.9
Q ss_pred HHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCC
Q 007721 463 LAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSS 508 (591)
Q Consensus 463 l~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p 508 (591)
+...++.+...| ++..+.+.+.++..+|+.+||.+..+++..+-|
T Consensus 131 ~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 131 IEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 445666666667 466677777788888888888888888877777
No 415
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=51.25 E-value=1.3e+02 Score=34.57 Aligned_cols=158 Identities=11% Similarity=0.015 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhh
Q 007721 372 ISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLY 451 (591)
Q Consensus 372 l~~~~~al~l~p~~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~ 451 (591)
+++...-|+-+|.|..|...+..-...-+++-|...|-|. ..|-|-.-+..++......+++-+-...+...-
T Consensus 679 ledA~qfiEdnPHprLWrllAe~Al~Kl~l~tAE~AFVrc-------~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~fe 751 (1189)
T KOG2041|consen 679 LEDAIQFIEDNPHPRLWRLLAEYALFKLALDTAEHAFVRC-------GDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFE 751 (1189)
T ss_pred hHHHHHHHhcCCchHHHHHHHHHHHHHHhhhhHhhhhhhh-------ccccchhHHHHhhhhhhHHHHhHhHhhhhcchh
Q ss_pred hccccc---cccc-hHH---------HHHHHHHc------CCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcC-----
Q 007721 452 DRWSSV---DDIG-SLA---------VINQMLIN------DPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHS----- 507 (591)
Q Consensus 452 ~~~~~~---~~~~-al~---------~~~~al~~------~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~----- 507 (591)
+...-+ |+-+ |+. -+.|-+.. |.+.-+++.+.|..+..+-.+++|...|.+.-...
T Consensus 752 eaek~yld~drrDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ec 831 (1189)
T KOG2041|consen 752 EAEKLYLDADRRDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIEC 831 (1189)
T ss_pred HhhhhhhccchhhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHH
Q ss_pred -----------------CchHHHHHhHHHHHHHcCCHHHHHHHHHH
Q 007721 508 -----------------SSEHERLVYEGWILYDTGHREEALSRAEK 536 (591)
Q Consensus 508 -----------------p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ 536 (591)
|++.+-+-..|..+-.-|-.++|++.|-|
T Consensus 832 ly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 832 LYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHh
No 416
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=50.80 E-value=24 Score=37.54 Aligned_cols=90 Identities=16% Similarity=0.244 Sum_probs=56.3
Q ss_pred eEEEEcCeEEEhhHHHHhhcCHHHHHhhcCCCCCCCCceeEecCCCCCHHHHHHHHHHHhcCCCC---------CCChhH
Q 007721 57 VTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVD---------LFCPGI 127 (591)
Q Consensus 57 V~f~v~g~~~~aHr~iLaa~S~yF~amf~~~~~Es~~~~I~l~~~~vs~~~~~~ll~ylYtg~~~---------~~~~~~ 127 (591)
|.+.+.+..|-+.-.-- .|..|.. ++|+| +--+..+.-+--.++--+.+. .+++++
T Consensus 110 IqleI~Dp~Id~~al~~-----a~gsLY~--------dEveI--~l~dv~gvlAaA~~lqldgl~qrC~evMie~lspkt 174 (488)
T KOG4682|consen 110 IQLEIPDPNIDVVALQV-----AFGSLYR--------DEVEI--KLSDVVGVLAAACLLQLDGLIQRCGEVMIETLSPKT 174 (488)
T ss_pred EEEEcCCCcccHHHHHH-----HHhhhhh--------hheec--cHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcChhh
Confidence 88888887776644333 3444442 35555 222222222222222222221 178999
Q ss_pred HHHHHHHHhhhChHHHHHHHHHHHHhhcCCHHhH
Q 007721 128 VLELLSFANRFCCEEMKSACDAHLASLVGDIEDA 161 (591)
Q Consensus 128 v~~lL~~A~~~~i~~L~~~C~~~L~~~i~~~~n~ 161 (591)
+...++++.+|++++++..|.++|..++-++.|.
T Consensus 175 a~~yYea~ckYgle~vk~kc~ewl~~nl~~i~~~ 208 (488)
T KOG4682|consen 175 ACGYYEAACKYGLESVKKKCLEWLLNNLMTIQNV 208 (488)
T ss_pred hhHhhhhhhhhhhHHHHHHHHHHHHHhhHhhhhH
Confidence 9999999999999999999999998866544443
No 417
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=50.06 E-value=2.9e+02 Score=31.69 Aligned_cols=70 Identities=13% Similarity=0.049 Sum_probs=41.3
Q ss_pred HHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Q 007721 341 LNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESN 417 (591)
Q Consensus 341 l~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~ 417 (591)
++-+-++|-..-++....+.-+..++.+.-|-+.|.+.=..+ ..-.++...++|.+|.+.-++--++-|+
T Consensus 736 idI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~k-------siVqlHve~~~W~eAFalAe~hPe~~~d 805 (1081)
T KOG1538|consen 736 IDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDLK-------SLVQLHVETQRWDEAFALAEKHPEFKDD 805 (1081)
T ss_pred HHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccHH-------HHhhheeecccchHhHhhhhhCcccccc
Confidence 344555566666666666666666666666666665543111 1224566778888887766666665555
No 418
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=49.62 E-value=1.5e+02 Score=32.00 Aligned_cols=181 Identities=12% Similarity=0.016 Sum_probs=93.4
Q ss_pred hHHHHhHHHHH--HHhCCHHHHHHHHHHHHhcCC--C--------hHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCC
Q 007721 352 SFPYKYRAVAK--MEEGQIRAAISEIDRIIVFKL--S--------VDCLELRAWLFIAADDYESALRDTLALLA---LES 416 (591)
Q Consensus 352 ~~ay~~rg~~l--~~l~~~~eAl~~~~~al~l~p--~--------~~~~~~r~~~~~~~g~~~~A~~d~~~al~---l~P 416 (591)
..+|..+-.++ +..+++.+|.+.-+..+.-=. + ...|+....++...|+...-..-+..-++ |.-
T Consensus 124 i~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrh 203 (493)
T KOG2581|consen 124 IEAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRH 203 (493)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcC
Confidence 34555544443 445889998887776663210 1 12234444567777775554444444333 332
Q ss_pred cchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccchHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHH
Q 007721 417 NYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAA 496 (591)
Q Consensus 417 ~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA 496 (591)
+. .|+.-..+++-.-..+-..++.|+-++.--. ..+.+- . -.-+.+.|.+|.+..-++.+..|
T Consensus 204 d~---e~qavLiN~LLr~yL~n~lydqa~~lvsK~~------------~pe~~s-n-ne~ARY~yY~GrIkaiqldYssA 266 (493)
T KOG2581|consen 204 DE---EGQAVLINLLLRNYLHNKLYDQADKLVSKSV------------YPEAAS-N-NEWARYLYYLGRIKAIQLDYSSA 266 (493)
T ss_pred cc---hhHHHHHHHHHHHHhhhHHHHHHHHHhhccc------------Cccccc-c-HHHHHHHHHHhhHHHhhcchhHH
Confidence 22 2333333332222223334444431111000 011110 0 13356778899999999999999
Q ss_pred HHHHHHHHhcCCchHHHHHhHH-------HHHHHcCCHHHHHHHHHHhhcccc----cHHHHHHHHHHhhh
Q 007721 497 MRCLRLARNHSSSEHERLVYEG-------WILYDTGHREEALSRAEKSISIER----TFEAFFLKAYILAD 556 (591)
Q Consensus 497 ~~~~~~Al~l~p~~~~a~~~~G-------~~l~~~g~~eeAl~~~e~ai~l~~----~~~~~~~~~~~~~~ 556 (591)
.+++-+|++..|+++ ++-.+- .+-..+|.+-| +++=-|| |...||...-|.-+
T Consensus 267 ~~~~~qa~rkapq~~-alGf~q~v~k~~ivv~ll~geiPe------rs~F~Qp~~~ksL~~Yf~Lt~AVr~ 330 (493)
T KOG2581|consen 267 LEYFLQALRKAPQHA-ALGFRQQVNKLMIVVELLLGEIPE------RSVFRQPGMRKSLRPYFKLTQAVRL 330 (493)
T ss_pred HHHHHHHHHhCcchh-hhhHHHHHHHHHHHHHHHcCCCcc------hhhhcCccHHHHHHHHHHHHHHHHH
Confidence 999999999999833 332221 12344566554 2333344 55677765555433
No 419
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=49.26 E-value=54 Score=23.48 Aligned_cols=39 Identities=21% Similarity=0.132 Sum_probs=28.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhhchHhHHH
Q 007721 389 ELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLV 431 (591)
Q Consensus 389 ~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~~~~~~~ 431 (591)
..++.+|..+||.++|..-++.+++ .++. -.+..+..++
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~-~~~~---~q~~eA~~LL 41 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE-EGDE---AQRQEARALL 41 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH-cCCH---HHHHHHHHHH
Confidence 3578899999999999999999995 4443 2344444443
No 420
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=49.12 E-value=25 Score=27.44 Aligned_cols=26 Identities=27% Similarity=0.307 Sum_probs=18.3
Q ss_pred HHhHHHHHHHcCCHHHHHHHHHHhhc
Q 007721 514 LVYEGWILYDTGHREEALSRAEKSIS 539 (591)
Q Consensus 514 ~~~~G~~l~~~g~~eeAl~~~e~ai~ 539 (591)
+...|.-.=..|++++|+..|.+|+.
T Consensus 8 ~~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 8 LIKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34444445557888888888888876
No 421
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=48.84 E-value=24 Score=29.81 Aligned_cols=30 Identities=17% Similarity=0.172 Sum_probs=28.3
Q ss_pred HHhHHHHHHHHHHhChHHHHHHHHHHHHhh
Q 007721 158 IEDALILIDYGLEERATLLVASCLQVLLRE 187 (591)
Q Consensus 158 ~~n~~~ll~~A~~~~~~~L~~~c~~~i~~n 187 (591)
.+++..++..|..++.+.|.+.|..++.++
T Consensus 81 ~~~~~~ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 81 DENVEELLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp TTTHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence 689999999999999999999999999876
No 422
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=48.24 E-value=3.5e+02 Score=28.41 Aligned_cols=82 Identities=16% Similarity=0.194 Sum_probs=55.1
Q ss_pred hhHHHHHHhCCHHHHHHHHHHHHhcCCchH--HHHHhHHHHHHHc---CCHHHHHHHHHHhhccccc----HHHHHHHHH
Q 007721 482 RQSLLLLRLNCQKAAMRCLRLARNHSSSEH--ERLVYEGWILYDT---GHREEALSRAEKSISIERT----FEAFFLKAY 552 (591)
Q Consensus 482 ~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~--~a~~~~G~~l~~~---g~~eeAl~~~e~ai~l~~~----~~~~~~~~~ 552 (591)
+++.+-.++||..||...+|...+-.|-.. ..+.|+=..++.+ -+.+.-+.+|+ -|++-+| +.|=.||+-
T Consensus 280 RLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYD-dislPkSA~icYTaALLK~R 358 (556)
T KOG3807|consen 280 RLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYD-DISLPKSAAICYTAALLKTR 358 (556)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cccCcchHHHHHHHHHHHHH
Confidence 456677889999999999999998888432 3344544445544 34555666776 3444333 336689999
Q ss_pred HhhhcCCCCCchh
Q 007721 553 ILADTNLDPESST 565 (591)
Q Consensus 553 ~~~~~~~~~~~~~ 565 (591)
|.+|.- -|++++
T Consensus 359 AVa~kF-spd~as 370 (556)
T KOG3807|consen 359 AVSEKF-SPETAS 370 (556)
T ss_pred HHHhhc-Cchhhh
Confidence 999865 666554
No 423
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=47.10 E-value=3.2e+02 Score=27.56 Aligned_cols=130 Identities=13% Similarity=-0.026 Sum_probs=69.5
Q ss_pred CChHHHHhHHHHHHHhCCHHHHHHHHH---------H-------HHhcCCC-hHHHHHHHH-HHHHcCCHHHHHHHHHHH
Q 007721 350 TLSFPYKYRAVAKMEEGQIRAAISEID---------R-------IIVFKLS-VDCLELRAW-LFIAADDYESALRDTLAL 411 (591)
Q Consensus 350 ~~~~ay~~rg~~l~~l~~~~eAl~~~~---------~-------al~l~p~-~~~~~~r~~-~~~~~g~~~~A~~d~~~a 411 (591)
.++.-+...|..+.+.|++.+|...|= . .-+-.|. .+.+..|+. -|..+|+...|...++.-
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f 167 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDTF 167 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 456677778888888888887766441 1 1122343 566777885 689999999999877666
Q ss_pred Hhc----CCcchh----hhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccchHHHHHHHHHcCCCCchhHhhh
Q 007721 412 LAL----ESNYMM----FHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQ 483 (591)
Q Consensus 412 l~l----~P~~~~----~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~~P~~~~~~~~~ 483 (591)
.+. .|+..- +.-.....+....+....+.- .+..+..|.++ |...|+.||....+....
T Consensus 168 ~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~~-~~~~F~~L~~~------------Y~~~L~rd~~~~~~L~~I 234 (260)
T PF04190_consen 168 TSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCERD-NLPLFKKLCEK------------YKPSLKRDPSFKEYLDKI 234 (260)
T ss_dssp HHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHHT--HHHHHHHHHH------------THH---HHHHTHHHHHHH
T ss_pred HHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhcC-cHHHHHHHHHH------------hCccccccHHHHHHHHHH
Confidence 665 665321 111122344444444444442 34455555555 555566666666666666
Q ss_pred HHHHHHhCC
Q 007721 484 SLLLLRLNC 492 (591)
Q Consensus 484 g~~l~~l~~ 492 (591)
|..+..+..
T Consensus 235 G~~yFgi~~ 243 (260)
T PF04190_consen 235 GQLYFGIQP 243 (260)
T ss_dssp HHHHH---S
T ss_pred HHHHCCCCC
Confidence 666665443
No 424
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=46.93 E-value=20 Score=28.95 Aligned_cols=15 Identities=20% Similarity=0.268 Sum_probs=8.1
Q ss_pred CCHHHHHHHHHHhhc
Q 007721 525 GHREEALSRAEKSIS 539 (591)
Q Consensus 525 g~~eeAl~~~e~ai~ 539 (591)
|+|++|+..|.++|.
T Consensus 20 ~~y~eA~~~Y~~~i~ 34 (75)
T cd02677 20 GDYEAAFEFYRAGVD 34 (75)
T ss_pred hhHHHHHHHHHHHHH
Confidence 555555555555543
No 425
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=45.59 E-value=96 Score=35.83 Aligned_cols=144 Identities=15% Similarity=0.067 Sum_probs=75.8
Q ss_pred CCHHHHHHHHHHHHhcCCC--hHHHHHHHHH---------HHHcCCHHHHHHHHHHHHhcCCcchhhhhhchHhHHHHHH
Q 007721 366 GQIRAAISEIDRIIVFKLS--VDCLELRAWL---------FIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLL 434 (591)
Q Consensus 366 ~~~~eAl~~~~~al~l~p~--~~~~~~r~~~---------~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~~~~~~~~~l 434 (591)
|+.+.|+...-.+++.+-+ ++.+-.-|.+ |...+..+.|+.+|++|.+..|.- -++-++..+|
T Consensus 257 GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~------~sGIN~atLL 330 (1226)
T KOG4279|consen 257 GDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLE------YSGINLATLL 330 (1226)
T ss_pred ccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchh------hccccHHHHH
Confidence 4555555555555555432 3322222222 334455677777888888888764 2233444555
Q ss_pred HhhhcccCchhhhhhhhhccccc-cccchHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHH
Q 007721 435 NHHVRSWSPADCWIKLYDRWSSV-DDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHER 513 (591)
Q Consensus 435 ~~~~~~~~~a~~~~~l~~~~~~~-~~~~al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a 513 (591)
...-+.++...=+-+++-++.+. ++.|+|.-+..= |++-.||.-+ ...|++..|+.....-.+++|-..+.
T Consensus 331 ~aaG~~Fens~Elq~IgmkLn~LlgrKG~leklq~Y-----WdV~~y~~as---VLAnd~~kaiqAae~mfKLk~P~WYL 402 (1226)
T KOG4279|consen 331 RAAGEHFENSLELQQIGMKLNSLLGRKGALEKLQEY-----WDVATYFEAS---VLANDYQKAIQAAEMMFKLKPPVWYL 402 (1226)
T ss_pred HHhhhhccchHHHHHHHHHHHHHhhccchHHHHHHH-----HhHHHhhhhh---hhccCHHHHHHHHHHHhccCCceehH
Confidence 55556666555445555554443 334444422221 1122222221 22477777888888888888776665
Q ss_pred HHhHHHHHHH
Q 007721 514 LVYEGWILYD 523 (591)
Q Consensus 514 ~~~~G~~l~~ 523 (591)
--..+.+++.
T Consensus 403 kS~meni~l~ 412 (1226)
T KOG4279|consen 403 KSTMENILLI 412 (1226)
T ss_pred HHHHHHHHHH
Confidence 5555655543
No 426
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.73 E-value=74 Score=36.06 Aligned_cols=77 Identities=10% Similarity=0.154 Sum_probs=63.9
Q ss_pred hhHHHHHHhCCHHHHHHHHHHHHhcCCch------HHHHHhHHHHHHHcCCHHHHHHHHHHhhcccccHH---HHHHHHH
Q 007721 482 RQSLLLLRLNCQKAAMRCLRLARNHSSSE------HERLVYEGWILYDTGHREEALSRAEKSISIERTFE---AFFLKAY 552 (591)
Q Consensus 482 ~~g~~l~~l~~~~eA~~~~~~Al~l~p~~------~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l~~~~~---~~~~~~~ 552 (591)
|.|.-+.+..++.-|++.|...++-=|.+ +-...++..|++.+.+.|.|+..|++|=+-+|... -+-+++.
T Consensus 359 n~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~ 438 (872)
T KOG4814|consen 359 NTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSF 438 (872)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 46667788999999999999999887775 45667888999999999999999999999987655 4556777
Q ss_pred HhhhcC
Q 007721 553 ILADTN 558 (591)
Q Consensus 553 ~~~~~~ 558 (591)
+-+|.|
T Consensus 439 ~~E~~S 444 (872)
T KOG4814|consen 439 LAEDKS 444 (872)
T ss_pred HHhcch
Confidence 777754
No 427
>PF12854 PPR_1: PPR repeat
Probab=44.23 E-value=43 Score=22.18 Aligned_cols=27 Identities=15% Similarity=0.156 Sum_probs=24.1
Q ss_pred ChHHHHhHHHHHHHhCCHHHHHHHHHH
Q 007721 351 LSFPYKYRAVAKMEEGQIRAAISEIDR 377 (591)
Q Consensus 351 ~~~ay~~rg~~l~~l~~~~eAl~~~~~ 377 (591)
+...|..+-..+.+.|+.++|+..|++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 466888999999999999999999876
No 428
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=44.04 E-value=3.8e+02 Score=29.00 Aligned_cols=106 Identities=14% Similarity=-0.002 Sum_probs=55.4
Q ss_pred cCCCChHHHHh-HHHHHHHhCCHHHHHHHHHHHHhcCCChHHH-------HHHHHHHHHcC--------------CHHHH
Q 007721 347 LDPTLSFPYKY-RAVAKMEEGQIRAAISEIDRIIVFKLSVDCL-------ELRAWLFIAAD--------------DYESA 404 (591)
Q Consensus 347 LdP~~~~ay~~-rg~~l~~l~~~~eAl~~~~~al~l~p~~~~~-------~~r~~~~~~~g--------------~~~~A 404 (591)
+.++.++..+. +|.....+|+|+-|...|+-+.+-=-+..+| +.-+.++...+ -+|.|
T Consensus 202 Y~~~S~E~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A 281 (414)
T PF12739_consen 202 YSADSPEAQMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENA 281 (414)
T ss_pred cCCCChHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHH
Confidence 33444444444 7888888999999999998887532211122 12223333333 13455
Q ss_pred HHHHHHHHhcCCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhc
Q 007721 405 LRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDR 453 (591)
Q Consensus 405 ~~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~ 453 (591)
...|.++-.. +-....+.-..+.....++......++.++.|++....
T Consensus 282 ~~~Y~~~~~~-~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 282 YYTYLKSALP-RCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE 329 (414)
T ss_pred HHHHHhhhcc-ccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 5556663211 00111112224555555666666666777666666655
No 429
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=43.77 E-value=1.7e+02 Score=29.92 Aligned_cols=61 Identities=10% Similarity=0.036 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHcCCCChHHHHhHHHHHHHh--CCHHHHHHHHHHHHhcCC-ChHHHHHHHHHH
Q 007721 335 REKIVDLNYASELDPTLSFPYKYRAVAKMEE--GQIRAAISEIDRIIVFKL-SVDCLELRAWLF 395 (591)
Q Consensus 335 ~eA~~dl~~Ai~LdP~~~~ay~~rg~~l~~l--~~~~eAl~~~~~al~l~p-~~~~~~~r~~~~ 395 (591)
++-+.-++.+++-+|.+...|..|--++-.- .++.-=+..-++.|..|| |...|+.|-++.
T Consensus 91 dneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl 154 (328)
T COG5536 91 DNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVL 154 (328)
T ss_pred hcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeee
Confidence 3344456777777888888888877776664 556666777777777777 466676666554
No 430
>PF13041 PPR_2: PPR repeat family
Probab=43.32 E-value=94 Score=22.15 Aligned_cols=37 Identities=8% Similarity=0.028 Sum_probs=27.8
Q ss_pred hHHHHhHHHHHHHhCCHHHHHHHHHHHHhcC--CChHHH
Q 007721 352 SFPYKYRAVAKMEEGQIRAAISEIDRIIVFK--LSVDCL 388 (591)
Q Consensus 352 ~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~--p~~~~~ 388 (591)
...|..+-..+.+.|++++|+..|++..+.. |+...+
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty 41 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTY 41 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 4567777888888899999999998888764 444444
No 431
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=43.09 E-value=2e+02 Score=31.59 Aligned_cols=66 Identities=9% Similarity=-0.052 Sum_probs=44.0
Q ss_pred HHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 007721 342 NYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALE 415 (591)
Q Consensus 342 ~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~ 415 (591)
+.|+.+-.+ + ..|-.+-+++|+.+.|.+..+. -+++..|..+|..-...|+++-|..+|+++-..+
T Consensus 312 e~AL~~~~D-~---~~rFeLAl~lg~L~~A~~~a~~----~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~ 377 (443)
T PF04053_consen 312 ELALQFVTD-P---DHRFELALQLGNLDIALEIAKE----LDDPEKWKQLGDEALRQGNIELAEECYQKAKDFS 377 (443)
T ss_dssp HHHHHHSS--H---HHHHHHHHHCT-HHHHHHHCCC----CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-HH
T ss_pred HHHHhhcCC-h---HHHhHHHHhcCCHHHHHHHHHh----cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCcc
Confidence 345555333 2 3455566778888887764321 1257788889999999999999999999876544
No 432
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=42.31 E-value=76 Score=36.67 Aligned_cols=120 Identities=18% Similarity=0.163 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhhchHhHHHHHHHhhhcccCchhhhh
Q 007721 369 RAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWI 448 (591)
Q Consensus 369 ~eAl~~~~~al~l~p~~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~ 448 (591)
+++.....|++++. --+..+..++++.+|.--|..++.+-|.... -.++... ..+.|.|
T Consensus 44 ~di~v~l~ra~~~~-------~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~---~~a~~~~-----------~~~s~~m 102 (748)
T KOG4151|consen 44 EDIEVFLSRALELK-------EEGNKLFQKRDYEGAMFRYDCAIKLLPKDHH---VVATLRS-----------NQASCYM 102 (748)
T ss_pred cchHHHHHHHHHHH-------hhhhHHhhhhhhhccchhhhhhheeccccch---hhhhHHH-----------HHHHHHh
Confidence 34555555555432 2345677888999999999999999995421 0000000 0122222
Q ss_pred hhhhccccccccc-hHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHH
Q 007721 449 KLYDRWSSVDDIG-SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERL 514 (591)
Q Consensus 449 ~l~~~~~~~~~~~-al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~ 514 (591)
+. ..+++. +....+-|+...|+-..+.+.|+.++..+++.+-|+++.+-.....|.+.++.
T Consensus 103 ~~-----~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~ 164 (748)
T KOG4151|consen 103 QL-----GLGEYPKAIPECELALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSAS 164 (748)
T ss_pred hc-----CccchhhhcCchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHH
Confidence 21 112222 34455677777777777777777777777777777777777777777775543
No 433
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=40.40 E-value=83 Score=35.15 Aligned_cols=43 Identities=16% Similarity=0.190 Sum_probs=31.8
Q ss_pred HHHHHHHHHH-----cCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHH
Q 007721 337 KIVDLNYASE-----LDPTLSFPYKYRAVAKMEEGQIRAAISEIDRII 379 (591)
Q Consensus 337 A~~dl~~Ai~-----LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al 379 (591)
.++.|++||. ++-.+.++|.++|.-+.+.++|.+|+..+-.|-
T Consensus 298 ~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa 345 (618)
T PF05053_consen 298 PLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREALRSWAEAA 345 (618)
T ss_dssp HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHHHHHHHHH
Confidence 4444555543 566788999999999999999999999888775
No 434
>KOG3342 consensus Signal peptidase I [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.07 E-value=20 Score=32.78 Aligned_cols=17 Identities=35% Similarity=0.384 Sum_probs=15.3
Q ss_pred eEEEEcCeEEEh-hHHHH
Q 007721 57 VTFCVRDKEISF-VRNKI 73 (591)
Q Consensus 57 V~f~v~g~~~~a-Hr~iL 73 (591)
|+|.|+|++||+ ||++-
T Consensus 84 vVf~vegR~IPiVHRviK 101 (180)
T KOG3342|consen 84 VVFKVEGREIPIVHRVIK 101 (180)
T ss_pred EEEEECCccCchhHHHHH
Confidence 899999999996 99875
No 435
>KOG1938 consensus Protein with predicted involvement in meiosis (GSG1) [Cell cycle control, cell division, chromosome partitioning]
Probab=39.65 E-value=2.5e+02 Score=33.52 Aligned_cols=97 Identities=18% Similarity=0.088 Sum_probs=61.7
Q ss_pred HHHHHhCCHHHHHHHHHHHHhcCCchHHH----H--HhHHHHHHHcCCHHHHHHHHHHhhcc--cccHH--HHHHHHHHh
Q 007721 485 LLLLRLNCQKAAMRCLRLARNHSSSEHER----L--VYEGWILYDTGHREEALSRAEKSISI--ERTFE--AFFLKAYIL 554 (591)
Q Consensus 485 ~~l~~l~~~~eA~~~~~~Al~l~p~~~~a----~--~~~G~~l~~~g~~eeAl~~~e~ai~l--~~~~~--~~~~~~~~~ 554 (591)
..+..-|-+.+|+++|++|+..-+..++. | +..|- -|.+-.-|.|-..+++.+.. ..|.. ..|||-|.-
T Consensus 324 ~r~s~anqp~ha~R~y~~ai~v~~~~~ws~~edh~~f~i~~-~y~l~~~D~a~~~f~~~i~~~~kqS~~~q~~FLRl~~~ 402 (960)
T KOG1938|consen 324 IRFSSANQPKHALRCYRQAIPVLKKPTWSFAEDHLYFTILH-VYLLCQEDDADEEFSKLIADCMKQSKGLQTEFLRLYSN 402 (960)
T ss_pred hhcccCCChhHHHHHHHHHhhhcCCCCcchhHHhHHHhHHH-hhhhhcchhHHHHHHHHHhhhhhcChHHHHHHHHHHHH
Confidence 34455677999999999999988765433 2 22222 34444467777777887764 34444 778888888
Q ss_pred hhcCCCCCc-----------hhHHHHHHHHHhcCCCCCc
Q 007721 555 ADTNLDPES-----------STYVIQLLEEALRCPSDGL 582 (591)
Q Consensus 555 ~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~ 582 (591)
.++..=+.+ |..=+..+...=.||+|+.
T Consensus 403 ~~s~~~~~t~v~~l~~lp~l~~e~~~vi~~~~~~~t~~e 441 (960)
T KOG1938|consen 403 KDSFIYDHTPVVQLPQLPMLSMEERLVILSEPTRSTDAE 441 (960)
T ss_pred HhhcccccCCccccCCcchhhhhHHHHHhcCCCCCcchh
Confidence 777654443 3333445556667777764
No 436
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=39.58 E-value=4.9e+02 Score=27.56 Aligned_cols=175 Identities=13% Similarity=0.055 Sum_probs=101.9
Q ss_pred HhHHHHHHHhCCHHHHHHHHHHHHhc-C-----CC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-cchhhhhhchH
Q 007721 356 KYRAVAKMEEGQIRAAISEIDRIIVF-K-----LS-VDCLELRAWLFIAADDYESALRDTLALLALES-NYMMFHGRVSG 427 (591)
Q Consensus 356 ~~rg~~l~~l~~~~eAl~~~~~al~l-~-----p~-~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P-~~~~~~~~~~~ 427 (591)
..+..+|.+.++|.+|++-.+..+.- + +. .+.+..-.-+|..+.+...|.+.+..|-+..- -|-+
T Consensus 132 arli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcp------- 204 (411)
T KOG1463|consen 132 ARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCP------- 204 (411)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccC-------
Confidence 46788899999999999988877643 1 11 12223334678889999999999888877542 2211
Q ss_pred hHHHHHHHhhhcccCchhhhhhhhhccccccccc-hHHHHHHHHHcCCC---CchhHhh---hHHHHHHhCCHHH--HHH
Q 007721 428 DHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIG-SLAVINQMLINDPG---KSFLRFR---QSLLLLRLNCQKA--AMR 498 (591)
Q Consensus 428 ~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~-al~~~~~al~~~P~---~~~~~~~---~g~~l~~l~~~~e--A~~ 498 (591)
-++++.++.+-.-.-.++ .|++ |-++|..|++---. ++.+... +=++-..+|.+++ ++-
T Consensus 205 PqlQa~lDLqSGIlha~e------------kDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~ll 272 (411)
T KOG1463|consen 205 PQLQATLDLQSGILHAAE------------KDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALL 272 (411)
T ss_pred HHHHHHHHHhccceeecc------------cccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 223333333332222222 3333 45555555543211 1222222 2233445677664 444
Q ss_pred HHHHHHhcCCchHHHHHhHHHHHH--HcCCHHHHHHHHHHhhcccccHHHHHH
Q 007721 499 CLRLARNHSSSEHERLVYEGWILY--DTGHREEALSRAEKSISIERTFEAFFL 549 (591)
Q Consensus 499 ~~~~Al~l~p~~~~a~~~~G~~l~--~~g~~eeAl~~~e~ai~l~~~~~~~~~ 549 (591)
.-..+++.+..+-+|+-..+.+.- .+.+|+.|++.|+.-+.-+|=...-+.
T Consensus 273 s~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~ivr~Hl~ 325 (411)
T KOG1463|consen 273 SAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDPIVRSHLQ 325 (411)
T ss_pred hhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcChHHHHHHH
Confidence 455666666666555544444432 356899999999999998887665554
No 437
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=39.47 E-value=5.6e+02 Score=28.23 Aligned_cols=222 Identities=14% Similarity=0.142 Sum_probs=130.7
Q ss_pred HHHHHHHcCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCcc
Q 007721 340 DLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLA-LESNY 418 (591)
Q Consensus 340 dl~~Ai~LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~~~~~~~r~~~~~~~g~~~~A~~d~~~al~-l~P~~ 418 (591)
.+++++.+=|-.++.|+.-..-+..-++-+.|+....++++.-|+.. .-.+..+....|-++--.+|++.++ |.-.|
T Consensus 290 ~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL~--~~lse~yel~nd~e~v~~~fdk~~q~L~r~y 367 (660)
T COG5107 290 IHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSLT--MFLSEYYELVNDEEAVYGCFDKCTQDLKRKY 367 (660)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCchh--eeHHHHHhhcccHHHHhhhHHHHHHHHHHHH
Confidence 57888888888889999888888889999999999999998877611 1112222222222222222333322 11111
Q ss_pred hhhhhhch------HhHHHHHHHhhhcccCchhhhh--------------hhhhc-------------------cccccc
Q 007721 419 MMFHGRVS------GDHLVKLLNHHVRSWSPADCWI--------------KLYDR-------------------WSSVDD 459 (591)
Q Consensus 419 ~~~~~~~~------~~~~~~~l~~~~~~~~~a~~~~--------------~l~~~-------------------~~~~~~ 459 (591)
.|.....+ .....+++.....+++-+=|.. .++-+ .....|
T Consensus 368 s~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d 447 (660)
T COG5107 368 SMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGD 447 (660)
T ss_pred hhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCC
Confidence 11000000 0111111111111111111100 01111 111134
Q ss_pred cc-hHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHc--CCHHHHHHHHHH
Q 007721 460 IG-SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDT--GHREEALSRAEK 536 (591)
Q Consensus 460 ~~-al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~--g~~eeAl~~~e~ 536 (591)
.. |-.+++-.|.--|+++.+-+.-=.-|.++|+-+.|...++++++.-.+..---.+--|+-|.. |+.-.+.+.=++
T Consensus 448 ~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~r 527 (660)
T COG5107 448 RATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEER 527 (660)
T ss_pred cchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHH
Confidence 43 666888889999998888777777888999999999999988865444433445666776654 888888877777
Q ss_pred hhcccc--cHHHHHHHHHHhhhcCCCCCc
Q 007721 537 SISIER--TFEAFFLKAYILADTNLDPES 563 (591)
Q Consensus 537 ai~l~~--~~~~~~~~~~~~~~~~~~~~~ 563 (591)
--.+-| |..+-|+--|++-|+.+-|.-
T Consensus 528 f~e~~pQen~~evF~Sry~ik~da~~~~l 556 (660)
T COG5107 528 FRELVPQENLIEVFTSRYAIKADAILPPL 556 (660)
T ss_pred HHHHcCcHhHHHHHHHHHhhhccccCCCC
Confidence 777644 455888888888887765543
No 438
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=38.72 E-value=56 Score=25.45 Aligned_cols=24 Identities=25% Similarity=0.245 Sum_probs=13.4
Q ss_pred HhHHHHHHHhCCHHHHHHHHHHHH
Q 007721 356 KYRAVAKMEEGQIRAAISEIDRII 379 (591)
Q Consensus 356 ~~rg~~l~~l~~~~eAl~~~~~al 379 (591)
..+|.-.-+.|++++|+..|..++
T Consensus 9 ~~~Av~~D~~g~~~~A~~~Y~~ai 32 (69)
T PF04212_consen 9 IKKAVEADEAGNYEEALELYKEAI 32 (69)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444444555566666666555555
No 439
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=37.98 E-value=1.6e+02 Score=26.92 Aligned_cols=34 Identities=26% Similarity=0.153 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc
Q 007721 385 VDCLELRAWLFIAADDYESALRDTLALLALESNY 418 (591)
Q Consensus 385 ~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~ 418 (591)
.+....++.-....||+.-|....+.++..+|++
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n 103 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDN 103 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCc
Confidence 3333334444445555555555555555555554
No 440
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=36.46 E-value=2.1e+02 Score=30.71 Aligned_cols=62 Identities=24% Similarity=0.200 Sum_probs=50.9
Q ss_pred hHhhhHHHHHHhCCHHHHHHHHHHHHhc-CCchH---HHHHhHHHHHHHcCCHHHHHHHHHHhhcc
Q 007721 479 LRFRQSLLLLRLNCQKAAMRCLRLARNH-SSSEH---ERLVYEGWILYDTGHREEALSRAEKSISI 540 (591)
Q Consensus 479 ~~~~~g~~l~~l~~~~eA~~~~~~Al~l-~p~~~---~a~~~~G~~l~~~g~~eeAl~~~e~ai~l 540 (591)
....++..+...+++.+|.+.++...+- .++.. .....+|.-..+..++++|+..+++.+..
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4567888889999999999999999985 44332 35566788889999999999999998875
No 441
>PF13934 ELYS: Nuclear pore complex assembly
Probab=36.36 E-value=4.3e+02 Score=26.00 Aligned_cols=157 Identities=20% Similarity=0.134 Sum_probs=90.8
Q ss_pred HhHHHHHHHhCCHH-----HHHHHHHHHHhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhhchHhHH
Q 007721 356 KYRAVAKMEEGQIR-----AAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHL 430 (591)
Q Consensus 356 ~~rg~~l~~l~~~~-----eAl~~~~~al~l~p~~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~~~~~~ 430 (591)
...+.+|.=+.+++ ++...|-++..+.|+.. ...+|..+..-+++++|+..+-.. .+.|++
T Consensus 45 ~K~~l~~YlLlD~~~~~~~~~~~~Fa~~f~ip~~~~-~~~~g~W~LD~~~~~~A~~~L~~p-s~~~~~------------ 110 (226)
T PF13934_consen 45 KKHSLFYYLLLDLDDTRPSELAESFARAFGIPPKYI-KFIQGFWLLDHGDFEEALELLSHP-SLIPWF------------ 110 (226)
T ss_pred HhHHHHHHHHHhcCccccccHHHHHHHHhCCCHHHH-HHHHHHHHhChHhHHHHHHHhCCC-CCCccc------------
Confidence 44444444443333 56888888887766543 355777777778888888777322 222332
Q ss_pred HHHHHhhhcccCchhhhhhhhhccccccccchHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCch
Q 007721 431 VKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE 510 (591)
Q Consensus 431 ~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~ 510 (591)
.-..-.+|...|+++.|++.++. ..-.+.+
T Consensus 111 -------------------------------------------------~~~Il~~L~~~~~~~lAL~y~~~-~~p~l~s 140 (226)
T PF13934_consen 111 -------------------------------------------------PDKILQALLRRGDPKLALRYLRA-VGPPLSS 140 (226)
T ss_pred -------------------------------------------------HHHHHHHHHHCCChhHHHHHHHh-cCCCCCC
Confidence 11122344556888888877654 5555556
Q ss_pred HHHHHhHHHHHHHcCCHHHHHHHHHHhhcc--cccHHHHHH----------HHHHhhhcCCCCCchhHHHHHHHHHhcCC
Q 007721 511 HERLVYEGWILYDTGHREEALSRAEKSISI--ERTFEAFFL----------KAYILADTNLDPESSTYVIQLLEEALRCP 578 (591)
Q Consensus 511 ~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l--~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 578 (591)
.++....-.+ ...|...|||...++--.- .+.++.++- +.-.|.+=.+|++.-..+.+.|. .||
T Consensus 141 ~~~~~~~~~~-La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~~~~~~~~~~Ll~LPl~~~EE~~l~~~L~---~~~ 216 (226)
T PF13934_consen 141 PEALTLYFVA-LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEECARSGRLDELLSLPLDEEEEQWLEKYLR---ESP 216 (226)
T ss_pred HHHHHHHHHH-HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHHhhhhhHHHHHHhCCCChHHHHHHHHHHc---cCC
Confidence 6665544444 6678889998766655552 355664432 33345555666666666666554 455
Q ss_pred CC
Q 007721 579 SD 580 (591)
Q Consensus 579 ~~ 580 (591)
+.
T Consensus 217 ~~ 218 (226)
T PF13934_consen 217 GR 218 (226)
T ss_pred Cc
Confidence 43
No 442
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=36.23 E-value=69 Score=34.57 Aligned_cols=59 Identities=12% Similarity=0.148 Sum_probs=43.7
Q ss_pred HHHhHHHHHHHhCCHHHHHHHHHHHHhcC--------CC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007721 354 PYKYRAVAKMEEGQIRAAISEIDRIIVFK--------LS--VDCLELRAWLFIAADDYESALRDTLALLA 413 (591)
Q Consensus 354 ay~~rg~~l~~l~~~~eAl~~~~~al~l~--------p~--~~~~~~r~~~~~~~g~~~~A~~d~~~al~ 413 (591)
+...+.-++.-+|+|..|+..++-+ .++ |. ...+|..|.+|.-++||.+|++.|..++-
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777789999998876532 121 21 23467899999999999999999999875
No 443
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=35.99 E-value=4.1e+02 Score=25.65 Aligned_cols=172 Identities=13% Similarity=0.006 Sum_probs=101.0
Q ss_pred hHHHHhHHHHHHH-hCCHHHHHHHHHHHHhcCCChHHHHHHHH--HH---HHcCCHHHHHHHHHHHHhcCCcchhhhhhc
Q 007721 352 SFPYKYRAVAKME-EGQIRAAISEIDRIIVFKLSVDCLELRAW--LF---IAADDYESALRDTLALLALESNYMMFHGRV 425 (591)
Q Consensus 352 ~~ay~~rg~~l~~-l~~~~eAl~~~~~al~l~p~~~~~~~r~~--~~---~~~g~~~~A~~d~~~al~l~P~~~~~~~~~ 425 (591)
+++-..+|.-+-. .+++++|...|.+--.-+..+..-+-.|. +. -..++...|++.|..+-.++- .
T Consensus 34 Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~n~--------~ 105 (248)
T KOG4014|consen 34 PESCQLLGDYLEGIQKNFQAAVKVFKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDANI--------P 105 (248)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhccCC--------H
Confidence 3444444544444 35677777777766654443433233332 11 234578889999998888654 3
Q ss_pred hHhHHHHHHHhhhcccCchhhhhhhhhccccccccc-hHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHH
Q 007721 426 SGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIG-SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLAR 504 (591)
Q Consensus 426 ~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~-al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al 504 (591)
.+....+++...-+.-.+++ -+.+ ++..+.|+..+ +++.+.|+++.-+.. | .+. +.
T Consensus 106 ~aC~~~gLl~~~g~~~r~~d------------pd~~Ka~~y~traCdl--~~~~aCf~LS~m~~~-g-~~k-------~~ 162 (248)
T KOG4014|consen 106 QACRYLGLLHWNGEKDRKAD------------PDSEKAERYMTRACDL--EDGEACFLLSTMYMG-G-KEK-------FK 162 (248)
T ss_pred HHHhhhhhhhccCcCCccCC------------CCcHHHHHHHHHhccC--CCchHHHHHHHHHhc-c-chh-------hc
Confidence 46666777766666666664 2333 77889998876 566778887754432 2 221 22
Q ss_pred hcCCch--HHHHHhHHHHHHHcCCHHHHHHHHHHhhcccccHH-HHHHHHHHhhhc
Q 007721 505 NHSSSE--HERLVYEGWILYDTGHREEALSRAEKSISIERTFE-AFFLKAYILADT 557 (591)
Q Consensus 505 ~l~p~~--~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l~~~~~-~~~~~~~~~~~~ 557 (591)
--.|-. +--...+|.+ ..+-++|++..-+|.++.--.. |=.-+-|.|+|-
T Consensus 163 t~ap~~g~p~~~~~~~~~---~kDMdka~qfa~kACel~~~~aCAN~SrMyklGDG 215 (248)
T KOG4014|consen 163 TNAPGEGKPLDRAELGSL---SKDMDKALQFAIKACELDIPQACANVSRMYKLGDG 215 (248)
T ss_pred ccCCCCCCCcchhhhhhh---hHhHHHHHHHHHHHHhcCChHHHhhHHHHHHccCC
Confidence 223411 1111223333 3456788888888888866666 777777787774
No 444
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=35.87 E-value=79 Score=32.11 Aligned_cols=75 Identities=17% Similarity=0.138 Sum_probs=47.6
Q ss_pred hCCHHHHHHHHHHHHhcCCchHHHHHhHHH-------HHHHcCCHHHHHHHHHHhhcc-------cccHH-HHHHHHHHh
Q 007721 490 LNCQKAAMRCLRLARNHSSSEHERLVYEGW-------ILYDTGHREEALSRAEKSISI-------ERTFE-AFFLKAYIL 554 (591)
Q Consensus 490 l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~-------~l~~~g~~eeAl~~~e~ai~l-------~~~~~-~~~~~~~~~ 554 (591)
+..-+.-...|.+|+.+.+.-+.- .-.|. .....|+|++|-..|=+|..- .|..- -|...|--|
T Consensus 204 qKnNKkLK~lYeqalhiKSAIPHP-lImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANML 282 (440)
T KOG1464|consen 204 QKNNKKLKALYEQALHIKSAIPHP-LIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANML 282 (440)
T ss_pred hcccHHHHHHHHHHHHhhccCCch-HHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHH
Confidence 444455566788888877553322 12333 356778888888887766652 22222 677778888
Q ss_pred hhcCCCCCchh
Q 007721 555 ADTNLDPESST 565 (591)
Q Consensus 555 ~~~~~~~~~~~ 565 (591)
..|.++|-.|.
T Consensus 283 mkS~iNPFDsQ 293 (440)
T KOG1464|consen 283 MKSGINPFDSQ 293 (440)
T ss_pred HHcCCCCCccc
Confidence 88998887663
No 445
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=35.77 E-value=2.8e+02 Score=30.49 Aligned_cols=126 Identities=15% Similarity=0.018 Sum_probs=72.0
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCC-hHHHHH-HHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhhchHhHHHHHHHhhhc
Q 007721 362 KMEEGQIRAAISEIDRIIVFKLS-VDCLEL-RAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVR 439 (591)
Q Consensus 362 l~~l~~~~eAl~~~~~al~l~p~-~~~~~~-r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~ 439 (591)
....|++++++..... =++-|. |..... .+..+..+|-.+.|+.- .-||+.
T Consensus 271 av~~~d~~~v~~~i~~-~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~-----~~D~~~--------------------- 323 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAA-SNLLPNIPKDQGQSIARFLEKKGYPELALQF-----VTDPDH--------------------- 323 (443)
T ss_dssp HHHTT-HHH-----HH-HHTGGG--HHHHHHHHHHHHHTT-HHHHHHH-----SS-HHH---------------------
T ss_pred HHHcCChhhhhhhhhh-hhhcccCChhHHHHHHHHHHHCCCHHHHHhh-----cCChHH---------------------
Confidence 3445788887776641 222354 444444 45678888888888763 334542
Q ss_pred ccCchhhhhhhhhccccccccchHHHHHHHHHcC--CCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhH
Q 007721 440 SWSPADCWIKLYDRWSSVDDIGSLAVINQMLIND--PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYE 517 (591)
Q Consensus 440 ~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~~--P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~ 517 (591)
+++.|- + +-.++.|++.. ..++.-|-++|.+-++.|+.+-|..+|+++- -+..+
T Consensus 324 rFeLAl---~-------------lg~L~~A~~~a~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~--------d~~~L 379 (443)
T PF04053_consen 324 RFELAL---Q-------------LGNLDIALEIAKELDDPEKWKQLGDEALRQGNIELAEECYQKAK--------DFSGL 379 (443)
T ss_dssp HHHHHH---H-------------CT-HHHHHHHCCCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHH
T ss_pred HhHHHH---h-------------cCCHHHHHHHHHhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc--------Ccccc
Confidence 111120 1 11344444443 4467899999999999999999999999864 24567
Q ss_pred HHHHHHcCCHHHHHHHHHHhh
Q 007721 518 GWILYDTGHREEALSRAEKSI 538 (591)
Q Consensus 518 G~~l~~~g~~eeAl~~~e~ai 538 (591)
.+++.-+|+.+.=-...+.|.
T Consensus 380 ~lLy~~~g~~~~L~kl~~~a~ 400 (443)
T PF04053_consen 380 LLLYSSTGDREKLSKLAKIAE 400 (443)
T ss_dssp HHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHH
Confidence 788888899755444445554
No 446
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=35.22 E-value=2.2e+02 Score=30.43 Aligned_cols=23 Identities=22% Similarity=0.236 Sum_probs=17.7
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCc
Q 007721 395 FIAADDYESALRDTLALLALESN 417 (591)
Q Consensus 395 ~~~~g~~~~A~~d~~~al~l~P~ 417 (591)
....|+|+.|+.-+=|++|+--+
T Consensus 251 Ra~~gryddAvarlYR~lEl~~Q 273 (379)
T PF09670_consen 251 RAAQGRYDDAVARLYRALELLAQ 273 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHH
Confidence 45688899888888888887543
No 447
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=35.11 E-value=1e+02 Score=19.78 Aligned_cols=24 Identities=25% Similarity=0.216 Sum_probs=14.2
Q ss_pred HHHHHHcCCCChHHHHhHHHHHHH
Q 007721 341 LNYASELDPTLSFPYKYRAVAKME 364 (591)
Q Consensus 341 l~~Ai~LdP~~~~ay~~rg~~l~~ 364 (591)
-.+++..+|.+..+|.+|=-++..
T Consensus 6 ~~~~l~~~pknys~W~yR~~ll~~ 29 (31)
T PF01239_consen 6 TKKALEKDPKNYSAWNYRRWLLKQ 29 (31)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCcccccHHHHHHHHHHH
Confidence 345666666666666666555443
No 448
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=35.02 E-value=56 Score=35.71 Aligned_cols=41 Identities=27% Similarity=0.315 Sum_probs=37.3
Q ss_pred cccc-hHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHH
Q 007721 458 DDIG-SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMR 498 (591)
Q Consensus 458 ~~~~-al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~ 498 (591)
++++ +.+++++++--||++..++..++.+|.+||...|+--
T Consensus 466 GdyrW~a~lln~~VfAdp~n~~Ar~L~Ad~lEQLgYqaE~A~ 507 (655)
T COG2015 466 GDYRWAAELLNQAVFADPGNKAARELQADALEQLGYQAESAT 507 (655)
T ss_pred ccchHHHHHHhhHHhcCCccHHHHHHHHhHHHHhhhhhccch
Confidence 7888 8889999999999999999999999999999887643
No 449
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=34.89 E-value=41 Score=27.19 Aligned_cols=26 Identities=12% Similarity=-0.100 Sum_probs=15.9
Q ss_pred hhhHHHHHHhCCHHHHHHHHHHHHhc
Q 007721 481 FRQSLLLLRLNCQKAAMRCLRLARNH 506 (591)
Q Consensus 481 ~~~g~~l~~l~~~~eA~~~~~~Al~l 506 (591)
..+|.-+...|++++|+..|+.|++.
T Consensus 10 a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 10 ARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34444456667777777777766643
No 450
>PF13041 PPR_2: PPR repeat family
Probab=34.86 E-value=97 Score=22.06 Aligned_cols=36 Identities=14% Similarity=0.080 Sum_probs=28.3
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcc
Q 007721 383 LSVDCLELRAWLFIAADDYESALRDTLALLA--LESNY 418 (591)
Q Consensus 383 p~~~~~~~r~~~~~~~g~~~~A~~d~~~al~--l~P~~ 418 (591)
||.-.|...-..+.+.|++++|.+-|++-.+ +.|+-
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~ 38 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDS 38 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCH
Confidence 4555566666788999999999999999988 45764
No 451
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=34.84 E-value=57 Score=26.60 Aligned_cols=29 Identities=17% Similarity=0.099 Sum_probs=22.3
Q ss_pred HHHHhHHHHHHHhCCHHHHHHHHHHHHhc
Q 007721 353 FPYKYRAVAKMEEGQIRAAISEIDRIIVF 381 (591)
Q Consensus 353 ~ay~~rg~~l~~l~~~~eAl~~~~~al~l 381 (591)
+.+.++|.-+-+.|+.++|+..|+++|..
T Consensus 9 ~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~ 37 (79)
T cd02679 9 FEEISKALRADEWGDKEQALAHYRKGLRE 37 (79)
T ss_pred HHHHHHHhhhhhcCCHHHHHHHHHHHHHH
Confidence 34566666677789999999999998853
No 452
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=34.03 E-value=50 Score=35.97 Aligned_cols=43 Identities=12% Similarity=0.282 Sum_probs=36.2
Q ss_pred cCCHHhHHHHHHHHHHhChHHHHHHHHHHHHhhhHhhhCCccccccc
Q 007721 155 VGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVMKIF 201 (591)
Q Consensus 155 i~~~~n~~~ll~~A~~~~~~~L~~~c~~~i~~n~~~v~~~~~f~~l~ 201 (591)
+. .+|++.++.+|+.|..+.|.+.|.+||.+|+.. ..+|++|.
T Consensus 185 ~~-~dtvi~tl~~AkKY~VpaLer~CVkflr~~l~~---~naf~~L~ 227 (521)
T KOG2075|consen 185 LA-ADTVITTLYAAKKYLVPALERQCVKFLRKNLMA---DNAFLELF 227 (521)
T ss_pred hh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCC---hHHHHHHH
Confidence 45 799999999999999999999999999988754 34566554
No 453
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=33.99 E-value=64 Score=20.84 Aligned_cols=29 Identities=21% Similarity=0.095 Sum_probs=19.4
Q ss_pred HHHHhHHHHHHHc----CCHHHHHHHHHHhhcc
Q 007721 512 ERLVYEGWILYDT----GHREEALSRAEKSISI 540 (591)
Q Consensus 512 ~a~~~~G~~l~~~----g~~eeAl~~~e~ai~l 540 (591)
++.+.+|.+++.- .+.++|+..|++|...
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~ 34 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAEL 34 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHc
Confidence 4667777776532 2778888888877654
No 454
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=33.80 E-value=7.4e+02 Score=28.01 Aligned_cols=55 Identities=27% Similarity=0.301 Sum_probs=42.6
Q ss_pred HHHHcCCHHHHHHHHHHhhcccccHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHhc
Q 007721 520 ILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALR 576 (591)
Q Consensus 520 ~l~~~g~~eeAl~~~e~ai~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (591)
+|..-|+.+||+...|+-..--+..-.+.++|-.|. ..|.+-|++.++-+|+.++
T Consensus 318 lLl~~~~l~eal~~~e~~c~~~~~~lpi~~~~~lle--~~d~~~~~~l~~~~e~~~~ 372 (547)
T PF14929_consen 318 LLLIGGRLKEALNELEKFCISSTCALPIRLRAHLLE--YFDQNNSSVLSSCLEDCLK 372 (547)
T ss_pred EEeccccHHHHHHHHHHhccCCCccchHHHHHHHHH--HhCcccHHHHHHHHHHHhc
Confidence 334448999999888887777777778888888886 4667788888888888764
No 455
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=33.73 E-value=56 Score=26.43 Aligned_cols=19 Identities=32% Similarity=0.354 Sum_probs=12.2
Q ss_pred HHHcCCHHHHHHHHHHhhc
Q 007721 521 LYDTGHREEALSRAEKSIS 539 (591)
Q Consensus 521 l~~~g~~eeAl~~~e~ai~ 539 (591)
+=..|++++|+..|.+||.
T Consensus 16 ~D~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 16 LDQEGRFQEALVCYQEGID 34 (77)
T ss_pred HHHhccHHHHHHHHHHHHH
Confidence 3345777777777777664
No 456
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=33.07 E-value=58 Score=26.32 Aligned_cols=46 Identities=11% Similarity=0.055 Sum_probs=26.2
Q ss_pred HhhhHHHHHHhCCHHHHHHHHHHHH-------hcCCchHHHHHhHHHHHHHcC
Q 007721 480 RFRQSLLLLRLNCQKAAMRCLRLAR-------NHSSSEHERLVYEGWILYDTG 525 (591)
Q Consensus 480 ~~~~g~~l~~l~~~~eA~~~~~~Al-------~l~p~~~~a~~~~G~~l~~~g 525 (591)
+..+|.-....|++++|+..|..|+ ...||..-.-..+.-+--.+.
T Consensus 9 l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~e~d~~~k~~~r~ki~eY~~ 61 (77)
T cd02683 9 VLKRAVELDQEGRFQEALVCYQEGIDLLMQVLKGTKDEAKKKNLRQKISEYMD 61 (77)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH
Confidence 3445555566777777777776665 455655544444444444433
No 457
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=32.52 E-value=67 Score=21.26 Aligned_cols=30 Identities=23% Similarity=0.288 Sum_probs=17.2
Q ss_pred HHHHHhHH--HHHHHcC-----CHHHHHHHHHHhhcc
Q 007721 511 HERLVYEG--WILYDTG-----HREEALSRAEKSISI 540 (591)
Q Consensus 511 ~~a~~~~G--~~l~~~g-----~~eeAl~~~e~ai~l 540 (591)
++|.+.+| .++..-. +.++|+..|++|-+.
T Consensus 1 a~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~ 37 (39)
T PF08238_consen 1 AEAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQ 37 (39)
T ss_dssp HHHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHhhhhccCCccccccchHHHHHHHHHc
Confidence 45677777 3323222 357777777777543
No 458
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=32.43 E-value=91 Score=19.22 Aligned_cols=17 Identities=12% Similarity=0.016 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHhcCCch
Q 007721 494 KAAMRCLRLARNHSSSE 510 (591)
Q Consensus 494 ~eA~~~~~~Al~l~p~~ 510 (591)
+.|...|+++++..|.+
T Consensus 4 ~~~r~i~e~~l~~~~~~ 20 (33)
T smart00386 4 ERARKIYERALEKFPKS 20 (33)
T ss_pred HHHHHHHHHHHHHCCCC
Confidence 33444444444444433
No 459
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=32.13 E-value=71 Score=33.12 Aligned_cols=36 Identities=14% Similarity=0.139 Sum_probs=24.7
Q ss_pred HHHhHHHHHHHcCCHHHHHHHHHHhhcccccHH-HHH
Q 007721 513 RLVYEGWILYDTGHREEALSRAEKSISIERTFE-AFF 548 (591)
Q Consensus 513 a~~~~G~~l~~~g~~eeAl~~~e~ai~l~~~~~-~~~ 548 (591)
+++-.|...-+.|..-+|+..|+.|+.|.|+.| +|+
T Consensus 21 ~l~~~av~~Eq~G~l~dai~fYR~AlqI~~diEs~~r 57 (366)
T KOG2997|consen 21 ALYEKAVLKEQDGSLYDAINFYRDALQIVPDIESKYR 57 (366)
T ss_pred HHHHHHHHHhhcCcHHHHHHHHHhhhcCCchHHHHHH
Confidence 344444445566777788888888888888887 666
No 460
>cd09248 BRO1_Rhophilin_1 Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin-1. This subfamily contains the Bro1-like domain of the RhoA-binding protein, Rhophilin-1. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding protein Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-1 binds both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-1 contains an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. The Drosophila knockout of the Rhophilin-1 is embryonic lethal, suggesting an essential role i
Probab=32.08 E-value=6.2e+02 Score=27.20 Aligned_cols=18 Identities=17% Similarity=0.351 Sum_probs=15.0
Q ss_pred CCHHHHHHHHHHhhcccc
Q 007721 525 GHREEALSRAEKSISIER 542 (591)
Q Consensus 525 g~~eeAl~~~e~ai~l~~ 542 (591)
.|+.+|+...|+|+++..
T Consensus 299 ahl~~a~~~~eea~r~~~ 316 (384)
T cd09248 299 AHLKRAILGQEEALRLHA 316 (384)
T ss_pred HHHHHHHHhhHHHHHHHH
Confidence 578889999999988865
No 461
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=31.10 E-value=1e+02 Score=28.05 Aligned_cols=53 Identities=13% Similarity=-0.043 Sum_probs=35.6
Q ss_pred chhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHH
Q 007721 477 SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREE 529 (591)
Q Consensus 477 ~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~ee 529 (591)
++.-..++......|++.-|....+.++..+|+|.++..-+..+|..+|.-.+
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 44455566666777888888888888888888888888877777776665443
No 462
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=30.64 E-value=1.5e+02 Score=30.57 Aligned_cols=57 Identities=12% Similarity=-0.057 Sum_probs=49.4
Q ss_pred HhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHHHHHHHH
Q 007721 480 RFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEK 536 (591)
Q Consensus 480 ~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ 536 (591)
.+-.+.....-|.+.+|+...++++.++|=+-.-..-+=.+|-..|+=-+|...|++
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyer 338 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYER 338 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHH
Confidence 344566777889999999999999999999998888888889999998888888876
No 463
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=30.61 E-value=77 Score=19.48 Aligned_cols=26 Identities=19% Similarity=0.231 Sum_probs=17.0
Q ss_pred HHhHHHHHHHhCCHHHHHHHHHHHHh
Q 007721 355 YKYRAVAKMEEGQIRAAISEIDRIIV 380 (591)
Q Consensus 355 y~~rg~~l~~l~~~~eAl~~~~~al~ 380 (591)
|..+-..+.+.|++++|..-|++..+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 55556666677777777777766654
No 464
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=30.57 E-value=1.1e+02 Score=31.11 Aligned_cols=51 Identities=16% Similarity=0.141 Sum_probs=38.6
Q ss_pred hCCHHHHHHHHHHHHhcCCchHH----HHHhHHHHHHHcCCHHHHHHHHHHhhcc
Q 007721 490 LNCQKAAMRCLRLARNHSSSEHE----RLVYEGWILYDTGHREEALSRAEKSISI 540 (591)
Q Consensus 490 l~~~~eA~~~~~~Al~l~p~~~~----a~~~~G~~l~~~g~~eeAl~~~e~ai~l 540 (591)
-..+++|+.+|++.+++.|.-++ |+-..=-+.+.+|+|+|-+..|.+-+..
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTY 94 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTY 94 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 34788888888888888887664 4445556778888888888888887653
No 465
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=30.38 E-value=80 Score=33.48 Aligned_cols=58 Identities=17% Similarity=0.205 Sum_probs=45.0
Q ss_pred hHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHH
Q 007721 462 SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYD 523 (591)
Q Consensus 462 al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~ 523 (591)
|+.+++.++..+|.+..+...+-.++..+|....|+..|+. +.+. +. -+..+|...+.
T Consensus 202 Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~-L~iK--~I-Q~DTL~h~~~~ 259 (365)
T PF09797_consen 202 AIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYES-LDIK--NI-QLDTLGHLILD 259 (365)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHh-cChH--HH-HHHHhHHHHHH
Confidence 68899999999999999999999999999999999999843 3332 21 33445555444
No 466
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=30.10 E-value=5.8e+02 Score=25.63 Aligned_cols=61 Identities=16% Similarity=0.096 Sum_probs=38.7
Q ss_pred CCchhHhhhHHHHHHhCCHHHHHHHHH----------------HHHhcCCchHHHHHhHHHHHHH-cCCHHHHHHHHH
Q 007721 475 GKSFLRFRQSLLLLRLNCQKAAMRCLR----------------LARNHSSSEHERLVYEGWILYD-TGHREEALSRAE 535 (591)
Q Consensus 475 ~~~~~~~~~g~~l~~l~~~~eA~~~~~----------------~Al~l~p~~~~a~~~~G~~l~~-~g~~eeAl~~~e 535 (591)
+++++|...|..+.+-|.+.+|...+- -..+-.|.+.+.+..|+.+-|- +|+..-|...++
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~ 165 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFD 165 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 677888888888888777777765542 2235667788888888877554 488777665443
No 467
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=29.99 E-value=86 Score=25.35 Aligned_cols=30 Identities=20% Similarity=0.432 Sum_probs=19.9
Q ss_pred HHHHHHhhhHHhhhccHHHHHHHHHHHhhc
Q 007721 256 MLALHQLGCVMFEREEYKDACYYFEAAADA 285 (591)
Q Consensus 256 ~~a~~~lG~~~~~~g~~~eA~~~f~~Al~~ 285 (591)
++.+-..++-.-..|+|++|+.+|..||+.
T Consensus 6 Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 6 AVQFARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344445566666677888888888776663
No 468
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=28.81 E-value=1.1e+02 Score=19.00 Aligned_cols=27 Identities=11% Similarity=0.197 Sum_probs=17.1
Q ss_pred HHhHHHHHHHhCCHHHHHHHHHHHHhc
Q 007721 355 YKYRAVAKMEEGQIRAAISEIDRIIVF 381 (591)
Q Consensus 355 y~~rg~~l~~l~~~~eAl~~~~~al~l 381 (591)
|..+-..+.+.|++++|+..|++..+.
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLER 29 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 455555666677777777777666543
No 469
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=28.75 E-value=65 Score=26.69 Aligned_cols=28 Identities=25% Similarity=0.456 Sum_probs=24.0
Q ss_pred HHHHHHHhhhChHHHHHHHHHHHHhhcC
Q 007721 129 LELLSFANRFCCEEMKSACDAHLASLVG 156 (591)
Q Consensus 129 ~~lL~~A~~~~i~~L~~~C~~~L~~~i~ 156 (591)
++++.+|..|+++.|...|.+|+..+..
T Consensus 2 ~~i~~~A~~~~~~~L~~~~~~~i~~nf~ 29 (103)
T PF07707_consen 2 LSIYRLAEKYGLEELAEACLRFIAKNFN 29 (103)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTHH
T ss_pred hhHHHHHHHcChHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999997553
No 470
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.50 E-value=8.8e+02 Score=27.21 Aligned_cols=71 Identities=18% Similarity=0.080 Sum_probs=57.6
Q ss_pred CCCCh-HHHHhHHHHHHHhCCHHHHHHHHHHHHhc------CC--ChHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCc
Q 007721 348 DPTLS-FPYKYRAVAKMEEGQIRAAISEIDRIIVF------KL--SVDCLELRAWLFIAADD-YESALRDTLALLALESN 417 (591)
Q Consensus 348 dP~~~-~ay~~rg~~l~~l~~~~eAl~~~~~al~l------~p--~~~~~~~r~~~~~~~g~-~~~A~~d~~~al~l~P~ 417 (591)
|++.. --|.-+|.++..+|+...|-..|+..++- +| -|.++|.+|.++..+|- ..+|...+.+|-+-..+
T Consensus 444 d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~d 523 (546)
T KOG3783|consen 444 DSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASD 523 (546)
T ss_pred CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccc
Confidence 44443 34555899999999999999999999832 33 26678889999999999 99999999999998887
Q ss_pred c
Q 007721 418 Y 418 (591)
Q Consensus 418 ~ 418 (591)
|
T Consensus 524 Y 524 (546)
T KOG3783|consen 524 Y 524 (546)
T ss_pred c
Confidence 7
No 471
>TIGR02498 type_III_ssaH type III secretion system protein, SsaH family. This family describes a small protein, always smaller than 100 amino acids, encoded in pathogenicity islands for bacterial type III secretion systems in various strains of Yersinia, Salmonella, and enteropathogenic E. coli, as well as Chromobacterium violaceum and Citrobacter rodentium. Although strictly associated with type III secretion systems, this protein seems not yet to have been characterized as part of the apparatus or as an effector protein.
Probab=28.25 E-value=2.8e+02 Score=22.59 Aligned_cols=61 Identities=23% Similarity=0.283 Sum_probs=50.0
Q ss_pred HHhCCHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHcCCHHHHHHHHHHhhcccccHHHHHHHHH
Q 007721 488 LRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAY 552 (591)
Q Consensus 488 ~~l~~~~eA~~~~~~Al~l~p~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l~~~~~~~~~~~~ 552 (591)
..-|-+++|..+..--=.+=||-....+-.+.+|+.+|+-..|++..+ -.++-+|--++++
T Consensus 17 vNH~L~~ea~ailnalP~li~D~~~r~vcea~llfGL~~~~~A~~~L~----~~~~~eA~~Lr~l 77 (79)
T TIGR02498 17 VNHSLPKEAHSILNALPQIIPDKKDRLVCEAILLFGLNHKNDAVKLLE----NMDDEEAQLLRSL 77 (79)
T ss_pred HccCcHHHHHHHHHhcccccCCHhHHHHHHHHHHHhcCcHHHHHHHHh----cCCcHHHHHHHHH
Confidence 445778888888888888999999999999999999999999986544 4667777777765
No 472
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=27.76 E-value=1.6e+02 Score=34.10 Aligned_cols=121 Identities=18% Similarity=0.130 Sum_probs=74.6
Q ss_pred hhhhhhhhccccccccchHHHHHHHHHcCCC------CchhHhhhHHHHHHhCC---HHHHHHHHHHHHhcC-CchHHHH
Q 007721 445 DCWIKLYDRWSSVDDIGSLAVINQMLINDPG------KSFLRFRQSLLLLRLNC---QKAAMRCLRLARNHS-SSEHERL 514 (591)
Q Consensus 445 ~~~~~l~~~~~~~~~~~al~~~~~al~~~P~------~~~~~~~~g~~l~~l~~---~~eA~~~~~~Al~l~-p~~~~a~ 514 (591)
+.-+++.-.+..+.|++|..-+=.-|+.=|+ .....|..+.+|-|-|+ -+.|+...=.+++.+ |-.++.+
T Consensus 202 d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapDm~ 281 (1226)
T KOG4279|consen 202 DTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPDMY 281 (1226)
T ss_pred HHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCcee
Confidence 3334555555666777766644445555562 22334556666766554 456777766666654 4456677
Q ss_pred HhHHHHHHHc---------CCHHHHHHHHHHhhcccccHHHHHHHHHHhhhcCCCCCchh
Q 007721 515 VYEGWILYDT---------GHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESST 565 (591)
Q Consensus 515 ~~~G~~l~~~---------g~~eeAl~~~e~ai~l~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (591)
--.|-++-++ +..+.|+..|+||.+.+|+--+=-+.|.-|--.+---+.|.
T Consensus 282 Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sGIN~atLL~aaG~~Fens~ 341 (1226)
T KOG4279|consen 282 CLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSGINLATLLRAAGEHFENSL 341 (1226)
T ss_pred eeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhccccHHHHHHHhhhhccchH
Confidence 7777776554 88999999999999999986544444444333333344443
No 473
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=27.71 E-value=3.7e+02 Score=29.61 Aligned_cols=81 Identities=11% Similarity=0.062 Sum_probs=49.4
Q ss_pred eEEEEcCeEEEhhHHHHhhcCHHHH-HhhcC------------CCCCCCCceeEecCCCCCHHHHHHHHHHHhcCCCCCC
Q 007721 57 VTFCVRDKEISFVRNKIASLSSPFK-AMLYG------------GFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLF 123 (591)
Q Consensus 57 V~f~v~g~~~~aHr~iLaa~S~yF~-amf~~------------~~~Es~~~~I~l~~~~vs~~~~~~ll~ylYtg~~~~~ 123 (591)
|.+-|||.++.--+..|.. .|-=| +-|.. ++-+ ..++.-+ +=+|.+|..+++|-+||++. .
T Consensus 33 i~lNVGG~r~~l~~~tL~~-~P~TRL~rL~~~~~~~~~l~~cDdyd~-~~~EyfF---DR~P~~F~~Vl~fYrtGkLH-~ 106 (477)
T KOG3713|consen 33 VRLNVGGTRHELYWSTLKR-FPLTRLGRLADCNSHEERLELCDDYDP-VTNEYFF---DRHPGAFAYVLNFYRTGKLH-V 106 (477)
T ss_pred EEEeeCCeeEEehHHHHhh-CchhHHHHHHhcccchhhhhhccccCc-ccCeeee---ccChHHHHHHHHHHhcCeec-c
Confidence 9999999888777776654 22110 11111 1111 2346666 66899999999999999999 4
Q ss_pred Chh-HHHHHHHHHhhhChHHH
Q 007721 124 CPG-IVLELLSFANRFCCEEM 143 (591)
Q Consensus 124 ~~~-~v~~lL~~A~~~~i~~L 143 (591)
+.+ ......+=-.+.+|+.-
T Consensus 107 p~~vC~~~F~eEL~yWgI~~~ 127 (477)
T KOG3713|consen 107 PADVCPLSFEEELDYWGIDEA 127 (477)
T ss_pred ccccchHHHHHHHHHhCCChh
Confidence 333 23333444455666543
No 474
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=27.64 E-value=1.4e+02 Score=18.74 Aligned_cols=27 Identities=22% Similarity=0.192 Sum_probs=16.4
Q ss_pred HHHhHHHHHHHhCCHHHHHHHHHHHHh
Q 007721 354 PYKYRAVAKMEEGQIRAAISEIDRIIV 380 (591)
Q Consensus 354 ay~~rg~~l~~l~~~~eAl~~~~~al~ 380 (591)
.|..+-.++...|+++.|...|+...+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 455555566666666666666666554
No 475
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=26.99 E-value=87 Score=24.85 Aligned_cols=19 Identities=37% Similarity=0.415 Sum_probs=14.2
Q ss_pred HHHcCCHHHHHHHHHHhhc
Q 007721 521 LYDTGHREEALSRAEKSIS 539 (591)
Q Consensus 521 l~~~g~~eeAl~~~e~ai~ 539 (591)
.-..|++++|+..|.+|+.
T Consensus 18 ~d~~g~~~eAl~~Y~~a~e 36 (77)
T smart00745 18 ADEAGDYEEALELYKKAIE 36 (77)
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 3346888888888888875
No 476
>PHA02790 Kelch-like protein; Provisional
Probab=26.79 E-value=1.1e+02 Score=33.96 Aligned_cols=34 Identities=9% Similarity=0.064 Sum_probs=31.5
Q ss_pred CChhHHHHHHHHHhhhChHHHHHHHHHHHHhhcC
Q 007721 123 FCPGIVLELLSFANRFCCEEMKSACDAHLASLVG 156 (591)
Q Consensus 123 ~~~~~v~~lL~~A~~~~i~~L~~~C~~~L~~~i~ 156 (591)
++++|.++++.+|+.|.+++|++.+.+|+.++..
T Consensus 120 l~~~NCl~i~~~A~~y~~~~L~~~a~~fi~~nF~ 153 (480)
T PHA02790 120 FRKEYCVECYMMGIEYGLSNLLCHTKDFIAKHFL 153 (480)
T ss_pred CCcchHHHHHHHHHHhCHHHHHHHHHHHHHHhHH
Confidence 7789999999999999999999999999988655
No 477
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=26.65 E-value=1.6e+02 Score=22.73 Aligned_cols=38 Identities=29% Similarity=0.238 Sum_probs=16.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhcccccHHHHHHHHHHh
Q 007721 517 EGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYIL 554 (591)
Q Consensus 517 ~G~~l~~~g~~eeAl~~~e~ai~l~~~~~~~~~~~~~~ 554 (591)
.|.-++..|+|=||-...|......|..+.-+++|+.+
T Consensus 5 ~~~~l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq 42 (62)
T PF03745_consen 5 EGIELFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQ 42 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHH
Confidence 34444445555555555555544433334444444443
No 478
>PHA03098 kelch-like protein; Provisional
Probab=26.57 E-value=67 Score=35.88 Aligned_cols=34 Identities=12% Similarity=0.242 Sum_probs=31.0
Q ss_pred CChhHHHHHHHHHhhhChHHHHHHHHHHHHhhcC
Q 007721 123 FCPGIVLELLSFANRFCCEEMKSACDAHLASLVG 156 (591)
Q Consensus 123 ~~~~~v~~lL~~A~~~~i~~L~~~C~~~L~~~i~ 156 (591)
++.+|+++++.+|..|.++.|++.|.+|+.++..
T Consensus 105 l~~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf~ 138 (534)
T PHA03098 105 IDDNNCIDIYRFSFFYGCKKLYSAAYNYIRNNIE 138 (534)
T ss_pred CCHhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999987543
No 479
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=26.55 E-value=1.3e+02 Score=26.78 Aligned_cols=32 Identities=6% Similarity=-0.065 Sum_probs=27.4
Q ss_pred HhHHHHHHHhCCHHHHHHHHHHHHhcCCChHH
Q 007721 356 KYRAVAKMEEGQIRAAISEIDRIIVFKLSVDC 387 (591)
Q Consensus 356 ~~rg~~l~~l~~~~eAl~~~~~al~l~p~~~~ 387 (591)
..+|..++..|++++|...|-+||..-|+|..
T Consensus 67 V~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~ 98 (121)
T PF02064_consen 67 VQLGEQLLAQGDYEEAAEHFYNALKVCPQPAE 98 (121)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTSSSHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHH
Confidence 45899999999999999999999999998764
No 480
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=26.45 E-value=57 Score=26.33 Aligned_cols=26 Identities=12% Similarity=-0.087 Sum_probs=13.4
Q ss_pred hhhHHHHHHhCCHHHHHHHHHHHHhc
Q 007721 481 FRQSLLLLRLNCQKAAMRCLRLARNH 506 (591)
Q Consensus 481 ~~~g~~l~~l~~~~eA~~~~~~Al~l 506 (591)
+.+|.-....|++++|++.|..|+++
T Consensus 10 v~~A~~eD~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 10 VTQAFDEDEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHHHHHhhHhhhHHHHHHHHHHHHHH
Confidence 34444444555555555555555543
No 481
>PF06902 Fer4_19: Divergent 4Fe-4S mono-cluster; InterPro: IPR010693 This entry represents bacterial ferredoxins such Ferredoxin-1, -2 and -soy from Streptomyces griseolus and Ferredoxin fas2 from Rhodococcus fascians, plus several bacterial hypothetical proteins that contain three highly conserved cysteine residues. These ferredoxins each bind a 3Fe-4S cluster. Ferredoxin-soy (SoyB) act as electron transport protein for the cytochrome P450-SOY system []. Ferredoxin-1 (SuaB) and Ferredoxin-2 (SubB) act as electron transport proteins for the herbicide-metabolising cytochrome P-450 SU1 and SU2 systems, respectively [, ]. Ferredoxin-fas2 also plays a role in electrontransfer, the fas operon encoding genes involved in cytokinin production and in host plant fasciation (leafy gall).
Probab=26.44 E-value=57 Score=25.39 Aligned_cols=23 Identities=39% Similarity=0.499 Sum_probs=16.1
Q ss_pred CCCCCchhHHHHHHHHHhcCCCCCcc
Q 007721 558 NLDPESSTYVIQLLEEALRCPSDGLR 583 (591)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (591)
+.|+.+...|+ +.+-+|||..|+
T Consensus 38 ~~d~a~~~~v~---~~v~~CPSGAL~ 60 (64)
T PF06902_consen 38 SPDEASAEEVR---EAVDRCPSGALS 60 (64)
T ss_pred CcCccCHHHHH---HHHHcCCccCcE
Confidence 55666655555 556699999986
No 482
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.26 E-value=1e+03 Score=27.12 Aligned_cols=149 Identities=18% Similarity=0.096 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhc------------CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCcchhhhhhchHhH
Q 007721 368 IRAAISEIDRIIVF------------KL-SVDCLELRAWLFIAADDYESALRDTLALLA-----LESNYMMFHGRVSGDH 429 (591)
Q Consensus 368 ~~eAl~~~~~al~l------------~p-~~~~~~~r~~~~~~~g~~~~A~~d~~~al~-----l~P~~~~~~~~~~~~~ 429 (591)
|++|..+|.-|.+. .| +.+.+.-.+.++..+||.+-|-....|+|= +.|.+.++.|+-...+
T Consensus 254 Yeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y 333 (665)
T KOG2422|consen 254 YEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPY 333 (665)
T ss_pred HHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcc
Q ss_pred HHHHHHhhhcccCchhhhhhhhhccccccccchHHHHHHHHHcCCCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCc
Q 007721 430 LVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSS 509 (591)
Q Consensus 430 ~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~~P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~ 509 (591)
+...+|.+=+ +.|+.=.-+.+-||+.-|.+.....+.++|.
T Consensus 334 ---------------------------------~~~eNR~FyL------~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~ 374 (665)
T KOG2422|consen 334 ---------------------------------IYPENRQFYL------ALFRYMQSLAQRGCWRTALEWCKLLLSLDPS 374 (665)
T ss_pred ---------------------------------cchhhHHHHH------HHHHHHHHHHhcCChHHHHHHHHHHhhcCCc
Q ss_pred -hHHHHHhHHHHHHHcCCHHHHHHHHHHhhcccccHHHHHHHHHHhh
Q 007721 510 -EHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILA 555 (591)
Q Consensus 510 -~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l~~~~~~~~~~~~~~~ 555 (591)
++.+..++=-++.-.-+==+=+-.+-++.+...+.-.+-+-+|.+|
T Consensus 375 eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~A 421 (665)
T KOG2422|consen 375 EDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLA 421 (665)
T ss_pred CCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHH
No 483
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=25.52 E-value=98 Score=24.67 Aligned_cols=24 Identities=21% Similarity=0.192 Sum_probs=16.1
Q ss_pred hHHHHHHHcCCHHHHHHHHHHhhc
Q 007721 516 YEGWILYDTGHREEALSRAEKSIS 539 (591)
Q Consensus 516 ~~G~~l~~~g~~eeAl~~~e~ai~ 539 (591)
..|.-.=..|++++|+..|.+|+.
T Consensus 11 ~~Av~~D~~g~y~eA~~~Y~~aie 34 (75)
T cd02678 11 KKAIEEDNAGNYEEALRLYQHALE 34 (75)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333444456888888888888775
No 484
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=25.20 E-value=1.3e+03 Score=28.71 Aligned_cols=50 Identities=18% Similarity=0.108 Sum_probs=25.8
Q ss_pred HhHHHHHHHhCCHHHHHHHHHHHHhcCCChHHHHHHH-HHHHHcCCHHHHHHHHHHHH
Q 007721 356 KYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRA-WLFIAADDYESALRDTLALL 412 (591)
Q Consensus 356 ~~rg~~l~~l~~~~eAl~~~~~al~l~p~~~~~~~r~-~~~~~~g~~~~A~~d~~~al 412 (591)
..+..-+.+++++-||-......+ .++. ++ .++.+-..|++|++-..++-
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~---sd~~----~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYL---SDPE----EAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHh---cCHH----HHHHHHhhHhHHHHHHHHHHhcc
Confidence 345556666677666655444333 1211 11 24555556666666655554
No 485
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=25.06 E-value=81 Score=25.47 Aligned_cols=50 Identities=20% Similarity=0.290 Sum_probs=30.2
Q ss_pred HHHHHHcCCHHHHHHHHHHhhcccccHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHhcC
Q 007721 518 GWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRC 577 (591)
Q Consensus 518 G~~l~~~g~~eeAl~~~e~ai~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 577 (591)
|.-.=..|++++|+..|.+|++ +|+. . -+...++.--+.+-++-+++|.+
T Consensus 13 A~~eD~~gny~eA~~lY~~ale-------~~~~--e-kn~~~k~~i~~K~~~~a~~yl~R 62 (75)
T cd02680 13 AFDEDEKGNAEEAIELYTEAVE-------LCIN--T-SNETMDQALQTKLKQLARQALDR 62 (75)
T ss_pred HHHhhHhhhHHHHHHHHHHHHH-------HHHH--h-cChhhHHHHHHHHHHHHHHHHHH
Confidence 3334456999999999999986 4444 1 23444444445555444555543
No 486
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=24.97 E-value=1.2e+02 Score=24.07 Aligned_cols=29 Identities=14% Similarity=0.181 Sum_probs=17.9
Q ss_pred HHHHHHhhhHHhhhccHHHHHHHHHHHhh
Q 007721 256 MLALHQLGCVMFEREEYKDACYYFEAAAD 284 (591)
Q Consensus 256 ~~a~~~lG~~~~~~g~~~eA~~~f~~Al~ 284 (591)
+..+...|+-.-..|+|++|+.+|..|++
T Consensus 6 A~~l~~~Av~~D~~g~y~eA~~~Y~~aie 34 (75)
T cd02678 6 AIELVKKAIEEDNAGNYEEALRLYQHALE 34 (75)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444555556666777777777766555
No 487
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=24.67 E-value=2e+02 Score=24.59 Aligned_cols=44 Identities=18% Similarity=0.217 Sum_probs=35.5
Q ss_pred hHHHHHhHHHHHHHcCCHHHHHHHHHHhhcccccHH-HHHHHHHH
Q 007721 510 EHERLVYEGWILYDTGHREEALSRAEKSISIERTFE-AFFLKAYI 553 (591)
Q Consensus 510 ~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~l~~~~~-~~~~~~~~ 553 (591)
-+......|++-+..||+++|.+...++-+..+... +|.+-|.|
T Consensus 58 ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~A 102 (108)
T PF07219_consen 58 KAQRALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARA 102 (108)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 356678899999999999999999999987765555 77776654
No 488
>PF14852 Fis1_TPR_N: Fis1 N-terminal tetratricopeptide repeat; PDB: 1IYG_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A 1PC2_A 1NZN_A.
Probab=24.33 E-value=86 Score=21.28 Aligned_cols=31 Identities=16% Similarity=0.229 Sum_probs=18.8
Q ss_pred HHHHhHHHHHHHcCC---HHHHHHHHHHhhcccc
Q 007721 512 ERLVYEGWILYDTGH---REEALSRAEKSISIER 542 (591)
Q Consensus 512 ~a~~~~G~~l~~~g~---~eeAl~~~e~ai~l~~ 542 (591)
+..++.+|+|..... ..+|+...++.++-.|
T Consensus 2 qt~FnyAw~Lv~S~~~~d~~~Gi~lLe~l~~~~p 35 (35)
T PF14852_consen 2 QTQFNYAWGLVKSNNREDQQEGIALLEELYRDEP 35 (35)
T ss_dssp HHHHHHHHHHHHSSSHHHHHHHHHHHHHHCCCS-
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHhccC
Confidence 456777777777643 4567766666655443
No 489
>PRK10316 hypothetical protein; Provisional
Probab=24.07 E-value=6.8e+02 Score=24.41 Aligned_cols=59 Identities=15% Similarity=-0.001 Sum_probs=44.4
Q ss_pred HHHhHHHHHHHhCCHHHHHHHHHH-------HHhcCCC--hHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007721 354 PYKYRAVAKMEEGQIRAAISEIDR-------IIVFKLS--VDCLELRAWLFIAADDYESALRDTLALL 412 (591)
Q Consensus 354 ay~~rg~~l~~l~~~~eAl~~~~~-------al~l~p~--~~~~~~r~~~~~~~g~~~~A~~d~~~al 412 (591)
.-..-++-.++.|+.++|++.++- .+.+-|- ...-..++..+...|+|-+|-..++++.
T Consensus 129 ~Ava~AN~~Lk~Gd~~~A~e~LklAgvdv~~~~al~PL~qT~~~V~~A~~ll~~gkyyeA~~aLk~a~ 196 (209)
T PRK10316 129 AAIKIANEKMAKGDKKGAMEELRLAGVGVMENQYLMPLKQTRNAVADAQKLLDKGKYYEANLALKGAE 196 (209)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHcCcchhhHhHhcCchhhHHHHHHHHHHHhCCChhHHHHHHHhhc
Confidence 345568889999999999996643 3455673 3445678889999999999988777764
No 490
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=23.99 E-value=4e+02 Score=28.62 Aligned_cols=135 Identities=13% Similarity=-0.026 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhhchHhHHHHHHHhhhcccCchhhhhhhhhccccccccchHHHHHH
Q 007721 389 ELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQ 468 (591)
Q Consensus 389 ~~r~~~~~~~g~~~~A~~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~ 468 (591)
..++.-+...++|..|.+-|+.+++..+.. ...++++...-+...|..|...+-.+|...++.
T Consensus 134 ~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~-----------------~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 134 QGYARRAINAFDYLFAHARLETLLRRLLSA-----------------VNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHhcccCh-----------------hhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Q ss_pred HHHcCCCCchhHhhhH----HHHHHhCCHHHHH-HHHHHHHhcCCchHHHHHhHHHHHH--HcCCHHHHHHHHHHhhcc
Q 007721 469 MLINDPGKSFLRFRQS----LLLLRLNCQKAAM-RCLRLARNHSSSEHERLVYEGWILY--DTGHREEALSRAEKSISI 540 (591)
Q Consensus 469 al~~~P~~~~~~~~~g----~~l~~l~~~~eA~-~~~~~Al~l~p~~~~a~~~~G~~l~--~~g~~eeAl~~~e~ai~l 540 (591)
.+.-.....+.++... .-......+.... +.....-...|-.+-...-+..+.- ..|+|+.|+...=|++++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~na~rr~~~~ry~da~~r~yR~~e~ 275 (380)
T TIGR02710 197 PLPERLALYQVTSHDELEDVIKRNASILPEIIGSRNGRREAKRRPFLPLLGDLLANAERRATQGRYDDAAARLYRALEL 275 (380)
T ss_pred ccchhhhhhhhhhhhHHHHHHHhHHhhcchhhhccchhhhhcccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
No 491
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=23.92 E-value=1.3e+02 Score=23.74 Aligned_cols=28 Identities=18% Similarity=0.179 Sum_probs=16.9
Q ss_pred HHHHHhhhHHhhhccHHHHHHHHHHHhh
Q 007721 257 LALHQLGCVMFEREEYKDACYYFEAAAD 284 (591)
Q Consensus 257 ~a~~~lG~~~~~~g~~~eA~~~f~~Al~ 284 (591)
..+...|+-.-..|++++|+.+|..|++
T Consensus 9 ~~li~~Av~~d~~g~~~eAl~~Y~~a~e 36 (77)
T smart00745 9 KELISKALKADEAGDYEEALELYKKAIE 36 (77)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344455555556777777777766555
No 492
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=23.26 E-value=1.4e+02 Score=23.97 Aligned_cols=30 Identities=23% Similarity=0.310 Sum_probs=18.8
Q ss_pred HHHHHHhhhHHhhhccHHHHHHHHHHHhhc
Q 007721 256 MLALHQLGCVMFEREEYKDACYYFEAAADA 285 (591)
Q Consensus 256 ~~a~~~lG~~~~~~g~~~eA~~~f~~Al~~ 285 (591)
+..+...++-.-..|+|++|..+|..+|..
T Consensus 6 A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 6 AAELIRLALEKEEEGDYEAAFEFYRAGVDL 35 (75)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 344444555555567788888777776653
No 493
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=23.01 E-value=1.4e+02 Score=23.93 Aligned_cols=30 Identities=17% Similarity=0.045 Sum_probs=18.4
Q ss_pred HHHHHHhhhHHhhhccHHHHHHHHHHHhhc
Q 007721 256 MLALHQLGCVMFEREEYKDACYYFEAAADA 285 (591)
Q Consensus 256 ~~a~~~lG~~~~~~g~~~eA~~~f~~Al~~ 285 (591)
+..+...|+-.-..|+|++|..+|..+|+.
T Consensus 6 Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~ 35 (75)
T cd02684 6 AIALVVQAVKKDQRGDAAAALSLYCSALQY 35 (75)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 344444555556667777777777766553
No 494
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.79 E-value=1.8e+02 Score=24.92 Aligned_cols=40 Identities=10% Similarity=-0.066 Sum_probs=31.3
Q ss_pred CCCchhHhhhHHHHHHhCCHHHHHHHHHHHHhcCCchHHH
Q 007721 474 PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHER 513 (591)
Q Consensus 474 P~~~~~~~~~g~~l~~l~~~~eA~~~~~~Al~l~p~~~~a 513 (591)
|-.|-+|-.+|.++.+.|+.+.|++-|+.--++-|.++--
T Consensus 69 ~vpPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~f 108 (121)
T COG4259 69 AVPPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGVF 108 (121)
T ss_pred CCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchhH
Confidence 4455677788888888888888888888888888887643
No 495
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=22.43 E-value=1.2e+02 Score=24.39 Aligned_cols=25 Identities=16% Similarity=-0.079 Sum_probs=15.7
Q ss_pred hhhHHHHHHhCCHHHHHHHHHHHHh
Q 007721 481 FRQSLLLLRLNCQKAAMRCLRLARN 505 (591)
Q Consensus 481 ~~~g~~l~~l~~~~eA~~~~~~Al~ 505 (591)
+.+|.-....|++++|+..|..|++
T Consensus 10 v~~Av~~D~~g~y~eA~~lY~~ale 34 (75)
T cd02684 10 VVQAVKKDQRGDAAAALSLYCSALQ 34 (75)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4444555666777777777766664
No 496
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=21.57 E-value=5e+02 Score=28.12 Aligned_cols=66 Identities=14% Similarity=0.005 Sum_probs=39.6
Q ss_pred HHHHHHHhhhHHhhhccHHHHHHHHHHHhhcc------ccchhhhhHHHHHHhCChHHHHHHHHHHHHhcCC
Q 007721 255 RMLALHQLGCVMFEREEYKDACYYFEAAADAG------HIYSLAGLARAKYKVGQQYSAYKLINSIISEHKP 320 (591)
Q Consensus 255 ~~~a~~~lG~~~~~~g~~~eA~~~f~~Al~~~------~~~a~~~la~~~~~~G~~~~A~~~~~~aI~~~~~ 320 (591)
.++..+.+-..++..+.|+.|.....++.-.. .+...+++|++...+++|..|.+.+..++...|.
T Consensus 208 qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 208 QAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 34444555556666777777765554432110 1223455677777777777777777777777775
No 497
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=21.46 E-value=1.4e+02 Score=23.60 Aligned_cols=31 Identities=19% Similarity=0.265 Sum_probs=0.0
Q ss_pred chHHHHHhHHHHHHHcCCHHHHHHHHHHhhc
Q 007721 509 SEHERLVYEGWILYDTGHREEALSRAEKSIS 539 (591)
Q Consensus 509 ~~~~a~~~~G~~l~~~g~~eeAl~~~e~ai~ 539 (591)
+.+-.+...|.-.=..|++++|+..|.+|+.
T Consensus 4 ~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e 34 (75)
T cd02656 4 QQAKELIKQAVKEDEDGNYEEALELYKEALD 34 (75)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
No 498
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=21.20 E-value=1.7e+03 Score=29.99 Aligned_cols=132 Identities=14% Similarity=0.053 Sum_probs=84.7
Q ss_pred cCCCChHHHHhHHHHHHHhCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-Ccchh-hhhh
Q 007721 347 LDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALE-SNYMM-FHGR 424 (591)
Q Consensus 347 LdP~~~~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p~~~~~~~r~~~~~~~g~~~~A~~d~~~al~l~-P~~~~-~~~~ 424 (591)
++-+.+..|...|.+-+..|+++-|-..+-+|-+.. -+..+..||-.+-..||-..|+..++..++++ |+... +.-.
T Consensus 1665 ~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r-~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~ 1743 (2382)
T KOG0890|consen 1665 LKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR-LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDT 1743 (2382)
T ss_pred ccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc-cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCcccc
Confidence 345568899999999999999999999999999777 35556679999999999999999999999876 54211 1111
Q ss_pred chHhHHH--HHHHhhhcccCchhhhhhhhhccccccccchHHHHHHHHHcCCCCchhHhhhHHHHH
Q 007721 425 VSGDHLV--KLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLL 488 (591)
Q Consensus 425 ~~~~~~~--~~l~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~al~~~P~~~~~~~~~g~~l~ 488 (591)
....+.+ +........|-+... + ...+++ +..|+.+.+..|..-+-||.+|.-+.
T Consensus 1744 p~~~n~~i~~~~~L~~~~~~~es~--n-----~~s~~i--lk~Y~~~~ail~ewe~~hy~l~~yy~ 1800 (2382)
T KOG0890|consen 1744 PQSVNLLIFKKAKLKITKYLEESG--N-----FESKDI--LKYYHDAKAILPEWEDKHYHLGKYYD 1800 (2382)
T ss_pred chhhhhhhhhhHHHHHHHHHHHhc--c-----hhHHHH--HHHHHHHHHHcccccCceeeHHHHHH
Confidence 1110000 000111111111110 0 001222 55899999999977788888884333
No 499
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=21.20 E-value=1.1e+02 Score=25.02 Aligned_cols=28 Identities=18% Similarity=0.135 Sum_probs=23.7
Q ss_pred HHHHHHHhhhChHHHHHHHHHHHHhhcC
Q 007721 129 LELLSFANRFCCEEMKSACDAHLASLVG 156 (591)
Q Consensus 129 ~~lL~~A~~~~i~~L~~~C~~~L~~~i~ 156 (591)
.+++.+|..|+++.|.+.|.+|+..+..
T Consensus 2 ~~i~~~a~~~~~~~L~~~~~~~i~~nf~ 29 (101)
T smart00875 2 LGIRRFAELYGLEELLEKALRFILKNFL 29 (101)
T ss_pred HhHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 4578889999999999999999887543
No 500
>PF12925 APP_E2: E2 domain of amyloid precursor protein; InterPro: IPR024329 Amyloid-beta precursor protein (APP, or A4) is associated with Alzheimer's disease (AD), because one of its breakdown products, amyloid-beta (A-beta), aggregates to form amyloid or senile plaques [, ]. Mutations in APP or in proteins that process APP have been linked with early-onset, familial AD. Individuals with Down's syndrome carry an extra copy of chromosome 21, which contains the APP gene, and almost invariably develop amyloid plaques and Alzheimer's symptoms. APP is important for the neurogenesis and neuronal regeneration, either through the intact protein, or through its many breakdown products []. APP consists of a large N-terminal extracellular region containing heparin-binding and copper-binding sites, a short hydrophobic transmembrane domain, and a short C-terminal intracellular domain. The N-terminal region is similar in structure to cysteine-rich growth factors and appears to function as a cell surface receptor, contributing to neurite growth, neuronal adhesion, axonogenesis and cell mobility []. APP acts as a kinesin I membrane receptor to mediate the axonal transport of beta-secretase and presenilin 1. The N-terminal domain can regulate neurite outgrowth through its binding to heparin and collagen I and IV, which are components of the extracellular matrix. APP is also coupled to apoptosis-inducing pathways, and is involved in copper homeostasis/oxidative stress through copper ion reduction, where copper-metallated APP induces neuronal death []. The C-terminal intracellular domain appears to be involved in transcription regulation through protein-protein interactions. APP can promote transcription activation through binding to APBB1/Tip60, and may bind to the adaptor protein FE65 to transactivate a wide variety of different promoters. APP can be processed by different sets of enzymes: In the non-amyloidogenic (non-plaque-forming) pathway, APP is cleaved by alpha-secretase to yield a soluble N-terminal sAPP-alpha (neuroprotective) and a membrane-bound CTF-alpha. CTF-alpha is broken-down by presenilin-containing gamma-secretase to yield soluble p3 and membrane-bound AICD (nuclear signalling). In the amyloidogenic pathway (plaque-forming), APP is broken down by beta-secretase to yield soluble sAPP-beta and membrane-bound CTF-beta. CTF-beta is broken down by gamma-secretase to yield soluble amyloid-beta and membrane-bound AICD. Amyloid-beta is required for neuronal function, but can aggregate to form amyloid plaques that seem to disrupt brain cells by clogging points of cell-cell contact. The E2 domain is the largest of the conserved domains in the amyloidogenic glycoproteins. The structure of E2 consists of two coiled-coil sub-structures connected through a continuous helix, and bears an unexpected resemblance to the spectrin family of protein structures. E2 can reversibly dimerise in solution, and the dimerisation occurs along the longest dimension of the molecule in an antiparallel orientation, which enables the N-terminal substructure of one monomer to pack against the C-terminal substructure of a second monomer. The high degree of conservation of residues at the putative dimer interface suggests that the E2 dimer observed in the crystal could be physiologically relevant. Heparin sulphate proteoglycans, the putative ligands for the precursor present in extracellular matrix, bind to E2 at a conserved and positively charged site near the dimer interface [].; PDB: 3K6B_A 3K66_A 1TKN_A 3NYL_A 3NYJ_A 3UMH_A 3UMK_A 3UMI_A 3QMK_B 3PMR_B ....
Probab=20.67 E-value=2e+02 Score=27.74 Aligned_cols=65 Identities=17% Similarity=0.162 Sum_probs=39.5
Q ss_pred HHHHhHHHHHHHhCCHHHHHHHHHHHHhcCC-ChHHHH--HHHHHHHHcCCHHHHHHHHHHHHhcCCcc
Q 007721 353 FPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLE--LRAWLFIAADDYESALRDTLALLALESNY 418 (591)
Q Consensus 353 ~ay~~rg~~l~~l~~~~eAl~~~~~al~l~p-~~~~~~--~r~~~~~~~g~~~~A~~d~~~al~l~P~~ 418 (591)
..+.-|-.+.+.. +-..|+..|.+||..+| ++.... ++..+....+|---.+..|+-+...||.-
T Consensus 99 ~~H~qRV~a~Lne-rkr~al~~y~~al~~~ppn~~~vl~~Lk~yiRa~~KDR~Htl~h~~H~~~~dp~~ 166 (193)
T PF12925_consen 99 ETHQQRVQAMLNE-RKRAALENYTAALQADPPNPHKVLKALKKYIRAEEKDRQHTLRHFEHLRMVDPEE 166 (193)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHHTCSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCHHH
Confidence 3444454444433 45678888888888765 443322 23455556667777788888888888853
Done!