BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007722
(591 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NSM|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 From Ostrinia Furnacalis
pdb|3NSN|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 Complexed With Tmg-Chitotriomycin
pdb|3OZP|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 Complexed With Pugnac
pdb|3OZO|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 Complexed With Ngt
Length = 572
Score = 281 bits (720), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 169/478 (35%), Positives = 243/478 (50%), Gaps = 51/478 (10%)
Query: 126 VNESYTLHVP---NDRPTANLTAETPWGAMRGLETFSQLVWGRPSR----VPVGVYVWDD 178
++ESY L V DR A +TA + +G GLET SQL R + V + D
Sbjct: 125 MDESYGLRVSPSGADRVNATITANSFFGMRHGLETLSQLFVFDDIRDHLLMVRDVNISDK 184
Query: 179 PIFPHRGLLLDTSRNYYGVGDIMRTIYAMSANKMNVFHWHITDSPSFPLNLPSEPGLAAK 238
P++P+RG+LLDT+RNYY + I RTI AM+A K+N FHWHITDS SFP P L
Sbjct: 185 PVYPYRGILLDTARNYYSIESIKRTIEAMAAVKLNTFHWHITDSQSFPFVTTKRPNLYKF 244
Query: 239 GSYGDDMQYSPDDVKKIVEFGLDHGVRVIPEIDSPGHTGS-WAEAYPEIVTCANMFWWPA 297
G+ Y+ ++++V FGL+ GVRV+PE D+P H G W + ++ C W +
Sbjct: 245 GALSPQKVYTKAAIREVVRFGLERGVRVLPEFDAPAHVGEGWQDT--DLTVCFKAEPWKS 302
Query: 298 ESKGEDKLAAEPGTGQLNPLNPKTYQVFKNVISDVVKMF-PEPFFHAGADEVTPGCWKTD 356
EP GQLNP + YQ +++ SD+ ++F FH G DEV+ CW +
Sbjct: 303 -------YCVEPPCGQLNPTKDELYQYLEDIYSDMAEVFDTTDIFHMGGDEVSEACWNSS 355
Query: 357 PTIQSFLSNGG---------SLSQVLEKFVNETFPYIVSLNRTVIYWEDVLLDGVVKVDS 407
+IQ+F+ L ++ + +I W L + K
Sbjct: 356 DSIQNFMMQNRWDLDKESFLKLWNYFQQKAQDKAYKAFGKKLPLILWTSTLTN--YKHID 413
Query: 408 SILDPKYTILQTWNNGPN-NTKKIVDAGYRAIVSSADYYYLDCGHGGFLGNDSQYDQLVG 466
L+ I+Q W G + K +++ GYR I+S+ D Y DCG+G ++G
Sbjct: 414 DYLNKDDYIIQVWTTGVDPQIKGLLEKGYRLIMSNYDALYFDCGYGAWVG---------- 463
Query: 467 SDTVSNGGSWCAPFKTWQTIYNYDITYGLSEEKATLVLGGEVALWSEQADPTVLDSRLWP 526
G +WC+P+ WQ +Y+ ++ E VLGGE ALWSEQ+D + LD RLWP
Sbjct: 464 -----AGNNWCSPYIGWQKVYDNSPAV-IALEHRDQVLGGEAALWSEQSDTSTLDGRLWP 517
Query: 527 RASAMAEALWSGNRDETGKKRYAEATDRLNEWRHRMVSRGIGAEPIQPLWCVRNPGMC 584
RA+A+AE LW+ + +A R+ R R+V GI AE +QP WC +N G C
Sbjct: 518 RAAALAERLWA-----EPATSWQDAEYRMLHIRERLVRMGIQAESLQPEWCYQNEGYC 570
>pdb|3S6T|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 V327g Complexed With Pugnac
Length = 575
Score = 281 bits (720), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 169/478 (35%), Positives = 243/478 (50%), Gaps = 51/478 (10%)
Query: 126 VNESYTLHVP---NDRPTANLTAETPWGAMRGLETFSQLVWGRPSR----VPVGVYVWDD 178
++ESY L V DR A +TA + +G GLET SQL R + V + D
Sbjct: 128 MDESYGLRVSPSGADRVNATITANSFFGMRHGLETLSQLFVFDDIRDHLLMVRDVNISDK 187
Query: 179 PIFPHRGLLLDTSRNYYGVGDIMRTIYAMSANKMNVFHWHITDSPSFPLNLPSEPGLAAK 238
P++P+RG+LLDT+RNYY + I RTI AM+A K+N FHWHITDS SFP P L
Sbjct: 188 PVYPYRGILLDTARNYYSIESIKRTIEAMAAVKLNTFHWHITDSQSFPFVTTKRPNLYKF 247
Query: 239 GSYGDDMQYSPDDVKKIVEFGLDHGVRVIPEIDSPGHTGS-WAEAYPEIVTCANMFWWPA 297
G+ Y+ ++++V FGL+ GVRV+PE D+P H G W + ++ C W +
Sbjct: 248 GALSPQKVYTKAAIREVVRFGLERGVRVLPEFDAPAHVGEGWQDT--DLTVCFKAEPWKS 305
Query: 298 ESKGEDKLAAEPGTGQLNPLNPKTYQVFKNVISDVVKMF-PEPFFHAGADEVTPGCWKTD 356
EP GQLNP + YQ +++ SD+ ++F FH G DEV+ CW +
Sbjct: 306 -------YCGEPPCGQLNPTKDELYQYLEDIYSDMAEVFDTTDIFHMGGDEVSEACWNSS 358
Query: 357 PTIQSFLSNGG---------SLSQVLEKFVNETFPYIVSLNRTVIYWEDVLLDGVVKVDS 407
+IQ+F+ L ++ + +I W L + K
Sbjct: 359 DSIQNFMMQNRWDLDKESFLKLWNYFQQKAQDKAYKAFGKKLPLILWTSTLTN--YKHID 416
Query: 408 SILDPKYTILQTWNNGPN-NTKKIVDAGYRAIVSSADYYYLDCGHGGFLGNDSQYDQLVG 466
L+ I+Q W G + K +++ GYR I+S+ D Y DCG+G ++G
Sbjct: 417 DYLNKDDYIIQVWTTGVDPQIKGLLEKGYRLIMSNYDALYFDCGYGAWVG---------- 466
Query: 467 SDTVSNGGSWCAPFKTWQTIYNYDITYGLSEEKATLVLGGEVALWSEQADPTVLDSRLWP 526
G +WC+P+ WQ +Y+ ++ E VLGGE ALWSEQ+D + LD RLWP
Sbjct: 467 -----AGNNWCSPYIGWQKVYDNSPAV-IALEHRDQVLGGEAALWSEQSDTSTLDGRLWP 520
Query: 527 RASAMAEALWSGNRDETGKKRYAEATDRLNEWRHRMVSRGIGAEPIQPLWCVRNPGMC 584
RA+A+AE LW+ + +A R+ R R+V GI AE +QP WC +N G C
Sbjct: 521 RAAALAERLWA-----EPATSWQDAEYRMLHIRERLVRMGIQAESLQPEWCYQNEGYC 573
>pdb|3VTR|A Chain A, Crystal Structure Of Insect Beta-n-acetyl-d-hexosaminidase
Ofhex1 E328a Complexed With Tmg-chitotriomycin
Length = 572
Score = 275 bits (702), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 167/478 (34%), Positives = 240/478 (50%), Gaps = 51/478 (10%)
Query: 126 VNESYTLHVP---NDRPTANLTAETPWGAMRGLETFSQLVWGRPSR----VPVGVYVWDD 178
++ESY L V DR A +TA + +G GLET SQL R + V + D
Sbjct: 125 MDESYGLRVSPSGADRVNATITANSFFGMRHGLETLSQLFVFDDIRDHLLMVRDVNISDK 184
Query: 179 PIFPHRGLLLDTSRNYYGVGDIMRTIYAMSANKMNVFHWHITDSPSFPLNLPSEPGLAAK 238
P++P+RG+LLDT+RNYY + I RTI AM+A K+N HWHITDS SFP P L
Sbjct: 185 PVYPYRGILLDTARNYYSIESIKRTIEAMAAVKLNTNHWHITDSQSFPFVTTKRPNLYKF 244
Query: 239 GSYGDDMQYSPDDVKKIVEFGLDHGVRVIPEIDSPGHTGS-WAEAYPEIVTCANMFWWPA 297
G+ Y+ ++++V FGL+ GVRV+PE D+P H G W + ++ C W +
Sbjct: 245 GALSPQKVYTKAAIREVVRFGLERGVRVLPEFDAPAHVGEGWQDT--DLTVCFKAEPWKS 302
Query: 298 ESKGEDKLAAEPGTGQLNPLNPKTYQVFKNVISDVVKMF-PEPFFHAGADEVTPGCWKTD 356
P GQLNP + YQ +++ SD+ ++F FH G DEV+ CW +
Sbjct: 303 -------YCVAPPCGQLNPTKDELYQYLEDIYSDMAEVFDTTDIFHMGGDEVSEACWNSS 355
Query: 357 PTIQSFLSNGG---------SLSQVLEKFVNETFPYIVSLNRTVIYWEDVLLDGVVKVDS 407
+IQ+F+ L ++ + +I W L + K
Sbjct: 356 DSIQNFMMQNRWDLDKESFLKLWNYFQQKAQDKAYKAFGKKLPLILWTSTLTN--YKHID 413
Query: 408 SILDPKYTILQTWNNGPN-NTKKIVDAGYRAIVSSADYYYLDCGHGGFLGNDSQYDQLVG 466
L+ I+Q W G + K +++ GYR I+S+ D Y DCG+G ++G
Sbjct: 414 DYLNKDDYIIQVWTTGVDPQIKGLLEKGYRLIMSNYDALYFDCGYGAWVG---------- 463
Query: 467 SDTVSNGGSWCAPFKTWQTIYNYDITYGLSEEKATLVLGGEVALWSEQADPTVLDSRLWP 526
G +WC+P+ WQ +Y+ ++ E VLGGE ALWSEQ+D + LD RLWP
Sbjct: 464 -----AGNNWCSPYIGWQKVYDNSPAV-IALEHRDQVLGGEAALWSEQSDTSTLDGRLWP 517
Query: 527 RASAMAEALWSGNRDETGKKRYAEATDRLNEWRHRMVSRGIGAEPIQPLWCVRNPGMC 584
RA+A+AE LW+ + +A R+ R R V GI AE +QP WC +N G C
Sbjct: 518 RAAALAERLWA-----EPATSWQDAEYRMLHIRERFVRMGIQAESLQPEWCYQNEGYC 570
>pdb|1O7A|A Chain A, Human Beta-Hexosaminidase B
pdb|1O7A|B Chain B, Human Beta-Hexosaminidase B
pdb|1O7A|C Chain C, Human Beta-Hexosaminidase B
pdb|1O7A|D Chain D, Human Beta-Hexosaminidase B
pdb|1O7A|E Chain E, Human Beta-Hexosaminidase B
pdb|1O7A|F Chain F, Human Beta-Hexosaminidase B
Length = 515
Score = 257 bits (657), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 160/462 (34%), Positives = 238/462 (51%), Gaps = 67/462 (14%)
Query: 127 NESYTLHVPNDRPTANLTAETPWGAMRGLETFSQLVWGRPSRVPVGVY------VWDDPI 180
+ESYTL V P A L A WGA+RGLETFSQLV+ + G + + D P
Sbjct: 105 DESYTLLV--KEPVAVLKANRVWGALRGLETFSQLVY----QDSYGTFTINESTIIDSPR 158
Query: 181 FPHRGLLLDTSRNYYGVGDIMRTIYAMSANKMNVFHWHITDSPSFPLNLPSEPGLAAKGS 240
F HRG+L+DTSR+Y V I++T+ AM+ NK NV HWHI D SFP + P L+ KGS
Sbjct: 159 FSHRGILIDTSRHYLPVKIILKTLDAMAFNKFNVLHWHIVDDQSFPYQSITFPELSNKGS 218
Query: 241 YGDDMQYSPDDVKKIVEFGLDHGVRVIPEIDSPGHTGSWAEAYPEIVTCANMFWWPAESK 300
Y Y+P+DV+ ++E+ G+RV+PE D+PGHT SW + +++T P S+
Sbjct: 219 YSLSHVYTPNDVRMVIEYARLRGIRVLPEFDTPGHTLSWGKGQKDLLT-------PCYSR 271
Query: 301 GEDKLAAEPGTGQLNPLNPKTYQVFKNVISDVVKMFPEPFFHAGADEVTPGCWKTDPTIQ 360
++KL + G +NP TY ++ ++FP+ F H G DEV CW+++P IQ
Sbjct: 272 -QNKLDS---FGPINPTLNTTYSFLTTFFKEISEVFPDQFIHLGGDEVEFKCWESNPKIQ 327
Query: 361 SFLSNGG---SLSQVLEKFVNETFPYIVSLNRTVIYWEDVLLDGVVKVDSSILDPKYTIL 417
F+ G ++ ++ + I ++N+ I W++V D + L P TI+
Sbjct: 328 DFMRQKGFGTDFKKLESFYIQKVLDIIATINKGSIVWQEVF------DDKAKLAPG-TIV 380
Query: 418 QTWNNG--PNNTKKIVDAGYRAIVSSADYYYLDCGHGGFLGNDSQYDQLVGSDTVSNGGS 475
+ W + P ++ +G+ I+S+ +YLD +S G
Sbjct: 381 EVWKDSAYPEELSRVTASGFPVILSAP--WYLDL--------------------ISYGQD 418
Query: 476 WCAPFKTWQTIYNYDITYGLSEEKATLVLGGEVALWSEQADPTVLDSRLWPRASAMAEAL 535
W +K + +G ++++ L +GGE LW E D T L RLWPRASA+ E L
Sbjct: 419 WRKYYKV------EPLDFGGTQKQKQLFIGGEACLWGEYVDATNLTPRLWPRASAVGERL 472
Query: 536 WSGNRDETGKKRYAEATDRLNEWRHRMVSRGIGAEPIQPLWC 577
WS + +A DRL R RMV RGI A+P+ +C
Sbjct: 473 WSSK----DVRDMDDAYDRLTRHRCRMVERGIAAQPLYAGYC 510
>pdb|2GK1|B Chain B, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|D Chain D, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|F Chain F, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|H Chain H, X-Ray Crystal Structure Of Ngt-Bound Hexa
Length = 503
Score = 257 bits (657), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 160/462 (34%), Positives = 238/462 (51%), Gaps = 67/462 (14%)
Query: 127 NESYTLHVPNDRPTANLTAETPWGAMRGLETFSQLVWGRPSRVPVGVY------VWDDPI 180
+ESYTL V P A L A WGA+RGLETFSQLV+ + G + + D P
Sbjct: 97 DESYTLLV--KEPVAVLKANRVWGALRGLETFSQLVY----QDSYGTFTINESTIIDSPR 150
Query: 181 FPHRGLLLDTSRNYYGVGDIMRTIYAMSANKMNVFHWHITDSPSFPLNLPSEPGLAAKGS 240
F HRG+L+DTSR+Y V I++T+ AM+ NK NV HWHI D SFP + P L+ KGS
Sbjct: 151 FSHRGILIDTSRHYLPVKIILKTLDAMAFNKFNVLHWHIVDDQSFPYQSITFPELSNKGS 210
Query: 241 YGDDMQYSPDDVKKIVEFGLDHGVRVIPEIDSPGHTGSWAEAYPEIVTCANMFWWPAESK 300
Y Y+P+DV+ ++E+ G+RV+PE D+PGHT SW + +++T P S+
Sbjct: 211 YSLSHVYTPNDVRMVIEYARLRGIRVLPEFDTPGHTLSWGKGQKDLLT-------PCYSR 263
Query: 301 GEDKLAAEPGTGQLNPLNPKTYQVFKNVISDVVKMFPEPFFHAGADEVTPGCWKTDPTIQ 360
++KL + G +NP TY ++ ++FP+ F H G DEV CW+++P IQ
Sbjct: 264 -QNKLDS---FGPINPTLNTTYSFLTTFFKEISEVFPDQFIHLGGDEVEFKCWESNPKIQ 319
Query: 361 SFLSNGG---SLSQVLEKFVNETFPYIVSLNRTVIYWEDVLLDGVVKVDSSILDPKYTIL 417
F+ G ++ ++ + I ++N+ I W++V D + L P TI+
Sbjct: 320 DFMRQKGFGTDFKKLESFYIQKVLDIIATINKGSIVWQEVF------DDKAKLAPG-TIV 372
Query: 418 QTWNNG--PNNTKKIVDAGYRAIVSSADYYYLDCGHGGFLGNDSQYDQLVGSDTVSNGGS 475
+ W + P ++ +G+ I+S+ +YLD +S G
Sbjct: 373 EVWKDSAYPEELSRVTASGFPVILSAP--WYLDL--------------------ISYGQD 410
Query: 476 WCAPFKTWQTIYNYDITYGLSEEKATLVLGGEVALWSEQADPTVLDSRLWPRASAMAEAL 535
W +K + +G ++++ L +GGE LW E D T L RLWPRASA+ E L
Sbjct: 411 WRKYYKV------EPLDFGGTQKQKQLFIGGEACLWGEYVDATNLTPRLWPRASAVGERL 464
Query: 536 WSGNRDETGKKRYAEATDRLNEWRHRMVSRGIGAEPIQPLWC 577
WS + +A DRL R RMV RGI A+P+ +C
Sbjct: 465 WSSK----DVRDMDDAYDRLTRHRCRMVERGIAAQPLYAGYC 502
>pdb|3LMY|A Chain A, The Crystal Structure Of Beta-Hexosaminidase B In Complex
With Pyrimethamine
pdb|3LMY|B Chain B, The Crystal Structure Of Beta-Hexosaminidase B In Complex
With Pyrimethamine
Length = 556
Score = 257 bits (657), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 160/462 (34%), Positives = 238/462 (51%), Gaps = 67/462 (14%)
Query: 127 NESYTLHVPNDRPTANLTAETPWGAMRGLETFSQLVWGRPSRVPVGVY------VWDDPI 180
+ESYTL V P A L A WGA+RGLETFSQLV+ + G + + D P
Sbjct: 146 DESYTLLV--KEPVAVLKANRVWGALRGLETFSQLVY----QDSYGTFTINESTIIDSPR 199
Query: 181 FPHRGLLLDTSRNYYGVGDIMRTIYAMSANKMNVFHWHITDSPSFPLNLPSEPGLAAKGS 240
F HRG+L+DTSR+Y V I++T+ AM+ NK NV HWHI D SFP + P L+ KGS
Sbjct: 200 FSHRGILIDTSRHYLPVKIILKTLDAMAFNKFNVLHWHIVDDQSFPYQSITFPELSNKGS 259
Query: 241 YGDDMQYSPDDVKKIVEFGLDHGVRVIPEIDSPGHTGSWAEAYPEIVTCANMFWWPAESK 300
Y Y+P+DV+ ++E+ G+RV+PE D+PGHT SW + +++T P S+
Sbjct: 260 YSLSHVYTPNDVRMVIEYARLRGIRVLPEFDTPGHTLSWGKGQKDLLT-------PCYSR 312
Query: 301 GEDKLAAEPGTGQLNPLNPKTYQVFKNVISDVVKMFPEPFFHAGADEVTPGCWKTDPTIQ 360
++KL + G +NP TY ++ ++FP+ F H G DEV CW+++P IQ
Sbjct: 313 -QNKLDS---FGPINPTLNTTYSFLTTFFKEISEVFPDQFIHLGGDEVEFKCWESNPKIQ 368
Query: 361 SFLSNGG---SLSQVLEKFVNETFPYIVSLNRTVIYWEDVLLDGVVKVDSSILDPKYTIL 417
F+ G ++ ++ + I ++N+ I W++V D + L P TI+
Sbjct: 369 DFMRQKGFGTDFKKLESFYIQKVLDIIATINKGSIVWQEVF------DDKAKLAPG-TIV 421
Query: 418 QTWNNG--PNNTKKIVDAGYRAIVSSADYYYLDCGHGGFLGNDSQYDQLVGSDTVSNGGS 475
+ W + P ++ +G+ I+S+ +YLD +S G
Sbjct: 422 EVWKDSAYPEELSRVTASGFPVILSAP--WYLDL--------------------ISYGQD 459
Query: 476 WCAPFKTWQTIYNYDITYGLSEEKATLVLGGEVALWSEQADPTVLDSRLWPRASAMAEAL 535
W +K + +G ++++ L +GGE LW E D T L RLWPRASA+ E L
Sbjct: 460 WRKYYKV------EPLDFGGTQKQKQLFIGGEACLWGEYVDATNLTPRLWPRASAVGERL 513
Query: 536 WSGNRDETGKKRYAEATDRLNEWRHRMVSRGIGAEPIQPLWC 577
WS + +A DRL R RMV RGI A+P+ +C
Sbjct: 514 WSSK----DVRDMDDAYDRLTRHRCRMVERGIAAQPLYAGYC 551
>pdb|1NOU|A Chain A, Native Human Lysosomal Beta-Hexosaminidase Isoform B
pdb|1NOU|B Chain B, Native Human Lysosomal Beta-Hexosaminidase Isoform B
pdb|1NOW|A Chain A, Human Lysosomal Beta-Hexosaminidase Isoform B In Complex
With (2r,3r,
4s,5r)-2-Acetamido-3,
4-Dihydroxy-5-Hydroxymethyl-Piperidinium Chloride
(Galnac-Isofagomine)
pdb|1NOW|B Chain B, Human Lysosomal Beta-Hexosaminidase Isoform B In Complex
With (2r,3r,
4s,5r)-2-Acetamido-3,
4-Dihydroxy-5-Hydroxymethyl-Piperidinium Chloride
(Galnac-Isofagomine)
pdb|1NP0|A Chain A, Human Lysosomal Beta-Hexosaminidase Isoform B In Complex
With Intermediate Analogue Nag-Thiazoline
pdb|1NP0|B Chain B, Human Lysosomal Beta-Hexosaminidase Isoform B In Complex
With Intermediate Analogue Nag-Thiazoline
pdb|2GJX|B Chain B, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|C Chain C, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|F Chain F, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|G Chain G, Crystallographic Structure Of Human Beta-Hexosaminidase A
Length = 507
Score = 257 bits (657), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 160/462 (34%), Positives = 238/462 (51%), Gaps = 67/462 (14%)
Query: 127 NESYTLHVPNDRPTANLTAETPWGAMRGLETFSQLVWGRPSRVPVGVY------VWDDPI 180
+ESYTL V P A L A WGA+RGLETFSQLV+ + G + + D P
Sbjct: 97 DESYTLLV--KEPVAVLKANRVWGALRGLETFSQLVY----QDSYGTFTINESTIIDSPR 150
Query: 181 FPHRGLLLDTSRNYYGVGDIMRTIYAMSANKMNVFHWHITDSPSFPLNLPSEPGLAAKGS 240
F HRG+L+DTSR+Y V I++T+ AM+ NK NV HWHI D SFP + P L+ KGS
Sbjct: 151 FSHRGILIDTSRHYLPVKIILKTLDAMAFNKFNVLHWHIVDDQSFPYQSITFPELSNKGS 210
Query: 241 YGDDMQYSPDDVKKIVEFGLDHGVRVIPEIDSPGHTGSWAEAYPEIVTCANMFWWPAESK 300
Y Y+P+DV+ ++E+ G+RV+PE D+PGHT SW + +++T P S+
Sbjct: 211 YSLSHVYTPNDVRMVIEYARLRGIRVLPEFDTPGHTLSWGKGQKDLLT-------PCYSR 263
Query: 301 GEDKLAAEPGTGQLNPLNPKTYQVFKNVISDVVKMFPEPFFHAGADEVTPGCWKTDPTIQ 360
++KL + G +NP TY ++ ++FP+ F H G DEV CW+++P IQ
Sbjct: 264 -QNKLDS---FGPINPTLNTTYSFLTTFFKEISEVFPDQFIHLGGDEVEFKCWESNPKIQ 319
Query: 361 SFLSNGG---SLSQVLEKFVNETFPYIVSLNRTVIYWEDVLLDGVVKVDSSILDPKYTIL 417
F+ G ++ ++ + I ++N+ I W++V D + L P TI+
Sbjct: 320 DFMRQKGFGTDFKKLESFYIQKVLDIIATINKGSIVWQEVF------DDKAKLAPG-TIV 372
Query: 418 QTWNNG--PNNTKKIVDAGYRAIVSSADYYYLDCGHGGFLGNDSQYDQLVGSDTVSNGGS 475
+ W + P ++ +G+ I+S+ +YLD +S G
Sbjct: 373 EVWKDSAYPEELSRVTASGFPVILSAP--WYLDL--------------------ISYGQD 410
Query: 476 WCAPFKTWQTIYNYDITYGLSEEKATLVLGGEVALWSEQADPTVLDSRLWPRASAMAEAL 535
W +K + +G ++++ L +GGE LW E D T L RLWPRASA+ E L
Sbjct: 411 WRKYYKV------EPLDFGGTQKQKQLFIGGEACLWGEYVDATNLTPRLWPRASAVGERL 464
Query: 536 WSGNRDETGKKRYAEATDRLNEWRHRMVSRGIGAEPIQPLWC 577
WS + +A DRL R RMV RGI A+P+ +C
Sbjct: 465 WSSK----DVRDMDDAYDRLTRHRCRMVERGIAAQPLYAGYC 502
>pdb|2GK1|A Chain A, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|C Chain C, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|E Chain E, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|G Chain G, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GJX|A Chain A, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|D Chain D, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|E Chain E, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|H Chain H, Crystallographic Structure Of Human Beta-Hexosaminidase A
Length = 507
Score = 239 bits (611), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 160/465 (34%), Positives = 233/465 (50%), Gaps = 71/465 (15%)
Query: 128 ESYTLHVPNDRPTANLTAETPWGAMRGLETFSQLVW--GRPSRVPVGVYVWDDPIFPHRG 185
E+YTL + +D+ L +ET WGA+RGLETFSQLVW + + D P FPHRG
Sbjct: 92 ENYTLTINDDQ--CLLLSETVWGALRGLETFSQLVWKSAEGTFFINKTEIEDFPRFPHRG 149
Query: 186 LLLDTSRNYYGVGDIMRTIYAMSANKMNVFHWHITDSPSFPLNLPSEPGLAAKGSYGDDM 245
LLLDTSR+Y + I+ T+ M+ NK+NVFHWH+ D PSFP + P L KGSY
Sbjct: 150 LLLDTSRHYLPLSSILDTLDVMAYNKLNVFHWHLVDDPSFPYESFTFPELMRKGSYNPVT 209
Query: 246 Q-YSPDDVKKIVEFGLDHGVRVIPEIDSPGHTGSWAEAYPEIVTCANMFWWPAESKGEDK 304
Y+ DVK+++E+ G+RV+ E D+PGHT SW P ++T P S
Sbjct: 210 HIYTAQDVKEVIEYARLRGIRVLAEFDTPGHTLSWGPGIPGLLT-------PCYS----- 257
Query: 305 LAAEPGTGQLNPLNP---KTYQVFKNVISDVVKMFPEPFFHAGADEVTPGCWKTDPTIQS 361
+EP +G P+NP TY+ +V +FP+ + H G DEV CWK++P IQ
Sbjct: 258 -GSEP-SGTFGPVNPSLNNTYEFMSTFFLEVSSVFPDFYLHLGGDEVDFTCWKSNPEIQD 315
Query: 362 FLSNGG---SLSQVLEKFVNETFPYIVSLNRTVIYWEDVLLDGVVKVDSSILDPKYTILQ 418
F+ G Q+ ++ + S + + W++V D VK+ TI+Q
Sbjct: 316 FMRKKGFGEDFKQLESFYIQTLLDIVSSYGKGYVVWQEV-FDNKVKIQPD------TIIQ 368
Query: 419 TWNNG-PNNTKK----IVDAGYRAIVSSADYYYLDCGHGGFLGNDSQYDQLVGSDTVSNG 473
W P N K + AG+RA++S+ +YL + +S G
Sbjct: 369 VWREDIPVNYMKELELVTKAGFRALLSAP--WYL--------------------NRISYG 406
Query: 474 GSWCAPFKTWQTIYNYD-ITYGLSEEKATLVLGGEVALWSEQADPTVLDSRLWPRASAMA 532
W+ Y + + + + E+ LV+GGE +W E D T L RLWPRA A+A
Sbjct: 407 -------PDWKDFYVVEPLAFEGTPEQKALVIGGEACMWGEYVDNTNLVPRLWPRAGAVA 459
Query: 533 EALWSGNRDETGKKRYAEATDRLNEWRHRMVSRGIGAEPIQPLWC 577
E LWS A +RL+ +R ++ RG+ A+P+ +C
Sbjct: 460 ERLWSNKL----TSDLTFAYERLSHFRCELLRRGVQAQPLNVGFC 500
>pdb|3GH4|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12
pdb|3GH5|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Glcnac
pdb|3GH7|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Galnac
pdb|3SUR|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Nag-Thiazoline.
pdb|3SUS|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With
Gal-Nag-Thiazoline
pdb|3SUT|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Pugnac
pdb|3SUU|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Gal-Pugnac
pdb|3SUV|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Nhac-Dnj
pdb|3SUW|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Nhac-Cas
Length = 525
Score = 116 bits (290), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 125/463 (26%), Positives = 189/463 (40%), Gaps = 76/463 (16%)
Query: 127 NESYTLHVPNDRPTANLTAETPWGAMRGLETFSQLV-WGRPSRVPVGVYVW--------D 177
NE Y L +++ T LTA P G RG +T QL+ G V W D
Sbjct: 121 NEGYDLITTSNQVT--LTANKPEGVFRGNQTLLQLLPAGIEKNTVVSGVQWVIPHSNISD 178
Query: 178 DPIFPHRGLLLDTSRNYYGVGDIMRTIYAMSANKMNVFHWHITDSPSFPLNLPSEPGLAA 237
P + +RGL+LD +R+++ V ++ R I S K+N FH H++D + + + S P L
Sbjct: 179 KPEYEYRGLMLDVARHFFTVDEVKRQIDLASQYKINKFHMHLSDDQGWRIEIKSWPDLIE 238
Query: 238 KGSYGDDMQ-----YSPDDVKKIVEFGLDHGVRVIPEIDSPGHTGSWAEAYPEIVTCANM 292
GS G Y+ + K IV + + + VIPEID PGHT + +Y E+
Sbjct: 239 IGSKGQVGGGPGGYYTQEQFKDIVSYAAERYIEVIPEIDMPGHTNAALASYGELN----- 293
Query: 293 FWWPAESKGEDKLAAEPGTGQLNPLNPKTYQVFKNVISDVVKMFPEPFFHAGADEVTPGC 352
P + + G L P TYQ ++VIS++ + P P+ H G DE
Sbjct: 294 ---PDGKRKAMRTDTAVGYSTLMPRAEITYQFVEDVISELAAISPSPYIHLGGDE----- 345
Query: 353 WKTDPTIQSFLSNGGSLSQVLEKFVNETFPYIVSLNRTVIYWEDVLLDGVVKVDSSILDP 412
SN S + + F S + V+ W+ D+S
Sbjct: 346 -----------SNATSAAD-YDYFFGRVTAIANSYGKKVVGWD--------PSDTSSGAT 385
Query: 413 KYTILQTWNNGPNNTKKIVDAGYRAIVSSADYYYLDCGHGGFLGNDSQYDQLVGSDTVSN 472
++LQ W + G + IVS A+ Y D SD+
Sbjct: 386 SDSVLQNWTCSASTGTAAKAKGMKVIVSPANAY---------------LDMKYYSDS-PI 429
Query: 473 GGSWCAPFKTWQTIYNYDITYGLSEEKATLVLGGEVALWSEQ-ADPTVLDSRLWPRASAM 531
G W F YN+D T + K + G E LW+E LD L+P+ +
Sbjct: 430 GLQWRG-FVNTNRAYNWDPTDCI---KGANIYGVESTLWTETFVTQDHLDYMLYPKLLSN 485
Query: 532 AEALWSGNRDETGKKRYAEATDRLNEWRHRMVSRGIG--AEPI 572
AE W+ G + + + +RL E R+ ++GI A+PI
Sbjct: 486 AEVGWTAR----GDRNWDDFKERLIEHTPRLQNKGIKFFADPI 524
>pdb|3RCN|A Chain A, Crystal Structure Of Beta-N-Acetylhexosaminidase From
Arthrobacter Aurescens
Length = 543
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 95/387 (24%), Positives = 165/387 (42%), Gaps = 54/387 (13%)
Query: 173 VYVWDDPIFPHRGLLLDTSRNYYGVGDIMRTIYAMSANKMNVFHWHITDSPSFPLNLPSE 232
V V D P F +RG LD +R++ +++R I + +K+NV H H+TD + +
Sbjct: 130 VSVEDKPRFGYRGTXLDVARHFXPKDNVLRFIEVXAXHKLNVLHLHLTDDQGWRXQINRY 189
Query: 233 PGLAAKGSYGDDMQ-----------------YSPDDVKKIVEFGLDHGVRVIPEIDSPGH 275
P L G++ + Y+ DD+++IV F D + VIPEID PGH
Sbjct: 190 PKLTETGAWRRESSLGSWRAGVFDGRPHGGFYTQDDLREIVAFAADRHITVIPEIDVPGH 249
Query: 276 TGSWAEAYPEIVTCANMFWWPAESKGEDKLAAEPGTGQ-LNPLNPKTYQVFKNVISDVVK 334
+ + AYPE+ PA+ ++ G + + ++ + + ++NV+ +VV+
Sbjct: 250 SQAAIAAYPELGAG------PADGSSPVEVWTRWGINETVLEVSETSLEFYRNVLDEVVE 303
Query: 335 MFPEPFFHAGADEVTPGCWKTDPTIQSFLSNGG--SLSQVLEKFVNETFPYIVSLNRTVI 392
+FP P+ G DEV W+ Q+ + G +S + FV + ++ R
Sbjct: 304 IFPSPWISLGGDEVPLTQWQASAQAQAKAAELGLDDVSGLHSWFVGQLALHLKHHGRATS 363
Query: 393 YWEDVLLDGVVKVDSSILDPKYTILQTWNNGPNNTKKIVDAGYRAIVSSADYYYLDCGHG 452
W+++ G+ P ++ +W G + GY + YLD
Sbjct: 364 VWDEIGDGGL---------PDGALVASW-RGYEGGIDALRKGYDVVXCPEHKLYLD---- 409
Query: 453 GFLGNDSQYDQLVGSDTVSNGGSWCAPFKTWQTIYNYDITYGL-SEEKATLVLGGEVALW 511
+ Q G D G T Q +Y ++ G+ + +LG + +W
Sbjct: 410 --------HRQADGDDEPVPVGF----VTTLQAVYEFEPLPGVEGTDFPGRLLGAQANIW 457
Query: 512 SEQAD-PTVLDSRLWPRASAMAEALWS 537
SE D P + +PR SA++E WS
Sbjct: 458 SEHLDSPRRVQFAAFPRLSAISEVFWS 484
>pdb|1HP4|A Chain A, Crystal Structure Of Streptomyces Plicatus
Beta-N-Acetylhexosaminidase
pdb|1HP5|A Chain A, Streptomyces Plicatus Beta-N-Acetylhexosaminidase
Complexed With Intermediate Analouge Nag-Thiazoline
pdb|1JAK|A Chain A, Streptomyces Plicatus Beta-N-Acetylhexosaminidase In
Complex With (2r,
3r,4s,5r)-2-Acetamido-3,
4-Dihydroxy-5-Hydroxymethyl-Piperidinium Chloride (Ifg)
pdb|1M01|A Chain A, Wildtype Streptomyces Plicatus Beta-Hexosaminidase In
Complex With Product (Glcnac)
Length = 512
Score = 95.5 bits (236), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 107/412 (25%), Positives = 168/412 (40%), Gaps = 62/412 (15%)
Query: 142 NLTAETPWGAMRGLETFSQLV---WGRPSRVP-----VGVYVWDDPIFPHRGLLLDTSRN 193
+TA G G++T QL+ + S P G + D P + R +LD SR+
Sbjct: 110 TITARKAAGLFHGVQTLRQLLPPAVEKDSAQPGPWLVAGGTIEDTPRYAWRSAMLDVSRH 169
Query: 194 YYGVGDIMRTIYAMSANKMNVFHWHITDSPSFPLNLPSEPGLAAKGSY-----GDDMQYS 248
++GV ++ R I ++ K N H H++D + + + S P LA G G Y+
Sbjct: 170 FFGVDEVKRYIDRVARYKYNKLHLHLSDDQGWRIAIDSWPRLATYGGSTEVGGGPGGYYT 229
Query: 249 PDDVKKIVEFGLDHGVRVIPEIDSPGHTGSWAEAYPEIVTCANMFWWPAESKGEDKLAAE 308
+ K+IV + + V+PEID PGHT + +Y E+ C + P G +
Sbjct: 230 KAEYKEIVRYAASRHLEVVPEIDMPGHTNAALASYAEL-NCDGVA--PPLYTG-----TK 281
Query: 309 PGTGQLNPLNPKTYQVFKNVISDVVKMFPEPFFHAGADEV--TPGCWKTDPTIQSFLSNG 366
G L TY +VI ++ + P + H G DE TP K D F++
Sbjct: 282 VGFSSLCVDKDVTYDFVDDVIGELAALTPGRYLHIGGDEAHSTP---KAD-----FVA-- 331
Query: 367 GSLSQVLEKFVNETFPYIVSLNRTVIYWEDVLLDGVVKVDSSILDPKYTILQTWNNGPNN 426
F+ P + +TV+ W L G V+ +++ + + +T +
Sbjct: 332 ---------FMKRVQPIVAKYGKTVVGWHQ--LAGAEPVEGALVQ-YWGLDRTGDAEKAE 379
Query: 427 TKKIVDAGYRAIVSSADYYYLDCGHGGFLGNDSQYDQLVGSDTVSNGGSWCAPFKTWQTI 486
+ G I+S AD YLD + + G SW + Q
Sbjct: 380 VAEAARNGTGLILSPADRTYLDMKY---------------TKDTPLGLSWAG-YVEVQRS 423
Query: 487 YNYDITYGLSEEKATLVLGGEVALWSEQ-ADPTVLDSRLWPRASAMAEALWS 537
Y++D L A V G E LW+E +DP LD +PR +AE WS
Sbjct: 424 YDWDPAGYLPGAPADAVRGVEAPLWTETLSDPDQLDYMAFPRLPGVAELGWS 475
>pdb|1M04|A Chain A, Mutant Streptomyces Plicatus Beta-Hexosaminidase (D313n)
In Complex With Product (Glcnac)
Length = 512
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 106/412 (25%), Positives = 168/412 (40%), Gaps = 62/412 (15%)
Query: 142 NLTAETPWGAMRGLETFSQLV---WGRPSRVP-----VGVYVWDDPIFPHRGLLLDTSRN 193
+TA G G++T QL+ + S P G + D P + R +LD SR+
Sbjct: 110 TITARKAAGLFHGVQTLRQLLPPAVEKDSAQPGPWLVAGGTIEDTPRYAWRSAMLDVSRH 169
Query: 194 YYGVGDIMRTIYAMSANKMNVFHWHITDSPSFPLNLPSEPGLAAKGSY-----GDDMQYS 248
++GV ++ R I ++ K N H H++D + + + S P LA G G Y+
Sbjct: 170 FFGVDEVKRYIDRVARYKYNKLHLHLSDDQGWRIAIDSWPRLATYGGSTEVGGGPGGYYT 229
Query: 249 PDDVKKIVEFGLDHGVRVIPEIDSPGHTGSWAEAYPEIVTCANMFWWPAESKGEDKLAAE 308
+ K+IV + + V+PEID PGHT + +Y E+ C + P G +
Sbjct: 230 KAEYKEIVRYAASRHLEVVPEIDMPGHTNAALASYAEL-NCDGVA--PPLYTG-----TK 281
Query: 309 PGTGQLNPLNPKTYQVFKNVISDVVKMFPEPFFHAGADEV--TPGCWKTDPTIQSFLSNG 366
G L TY +VI ++ + P + H G +E TP K D F++
Sbjct: 282 VGFSSLCVDKDVTYDFVDDVIGELAALTPGRYLHIGGNEAHSTP---KAD-----FVA-- 331
Query: 367 GSLSQVLEKFVNETFPYIVSLNRTVIYWEDVLLDGVVKVDSSILDPKYTILQTWNNGPNN 426
F+ P + +TV+ W L G V+ +++ + + +T +
Sbjct: 332 ---------FMKRVQPIVAKYGKTVVGWHQ--LAGAEPVEGALVQ-YWGLDRTGDAEKAE 379
Query: 427 TKKIVDAGYRAIVSSADYYYLDCGHGGFLGNDSQYDQLVGSDTVSNGGSWCAPFKTWQTI 486
+ G I+S AD YLD + + G SW + Q
Sbjct: 380 VAEAARNGTGLILSPADRTYLDMKY---------------TKDTPLGLSWAG-YVEVQRS 423
Query: 487 YNYDITYGLSEEKATLVLGGEVALWSEQ-ADPTVLDSRLWPRASAMAEALWS 537
Y++D L A V G E LW+E +DP LD +PR +AE WS
Sbjct: 424 YDWDPAGYLPGAPADAVRGVEAPLWTETLSDPDQLDYMAFPRLPGVAELGWS 475
>pdb|1M03|A Chain A, Mutant Streptomyces Plicatus Beta-Hexosaminidase (D313a)
In Complex With Product (Glcnac)
Length = 512
Score = 92.4 bits (228), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 106/412 (25%), Positives = 167/412 (40%), Gaps = 62/412 (15%)
Query: 142 NLTAETPWGAMRGLETFSQLV---WGRPSRVP-----VGVYVWDDPIFPHRGLLLDTSRN 193
+TA G G++T QL+ + S P G + D P + R +LD SR+
Sbjct: 110 TITARKAAGLFHGVQTLRQLLPPAVEKDSAQPGPWLVAGGTIEDTPRYAWRSAMLDVSRH 169
Query: 194 YYGVGDIMRTIYAMSANKMNVFHWHITDSPSFPLNLPSEPGLAAKGSY-----GDDMQYS 248
++GV ++ R I ++ K N H H++D + + + S P LA G G Y+
Sbjct: 170 FFGVDEVKRYIDRVARYKYNKLHLHLSDDQGWRIAIDSWPRLATYGGSTEVGGGPGGYYT 229
Query: 249 PDDVKKIVEFGLDHGVRVIPEIDSPGHTGSWAEAYPEIVTCANMFWWPAESKGEDKLAAE 308
+ K+IV + + V+PEID PGHT + +Y E+ C + P G +
Sbjct: 230 KAEYKEIVRYAASRHLEVVPEIDMPGHTNAALASYAEL-NCDGVA--PPLYTG-----TK 281
Query: 309 PGTGQLNPLNPKTYQVFKNVISDVVKMFPEPFFHAGADEV--TPGCWKTDPTIQSFLSNG 366
G L TY +VI ++ + P + H G E TP K D F++
Sbjct: 282 VGFSSLCVDKDVTYDFVDDVIGELAALTPGRYLHIGGAEAHSTP---KAD-----FVA-- 331
Query: 367 GSLSQVLEKFVNETFPYIVSLNRTVIYWEDVLLDGVVKVDSSILDPKYTILQTWNNGPNN 426
F+ P + +TV+ W L G V+ +++ + + +T +
Sbjct: 332 ---------FMKRVQPIVAKYGKTVVGWHQ--LAGAEPVEGALVQ-YWGLDRTGDAEKAE 379
Query: 427 TKKIVDAGYRAIVSSADYYYLDCGHGGFLGNDSQYDQLVGSDTVSNGGSWCAPFKTWQTI 486
+ G I+S AD YLD + + G SW + Q
Sbjct: 380 VAEAARNGTGLILSPADRTYLDMKY---------------TKDTPLGLSWAG-YVEVQRS 423
Query: 487 YNYDITYGLSEEKATLVLGGEVALWSEQ-ADPTVLDSRLWPRASAMAEALWS 537
Y++D L A V G E LW+E +DP LD +PR +AE WS
Sbjct: 424 YDWDPAGYLPGAPADAVRGVEAPLWTETLSDPDQLDYMAFPRLPGVAELGWS 475
>pdb|1QBB|A Chain A, Bacterial Chitobiase Complexed With Chitobiose (Dinag)
pdb|1QBA|A Chain A, Bacterial Chitobiase, Glycosyl Hydrolase Family 20
Length = 858
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 86/393 (21%), Positives = 144/393 (36%), Gaps = 76/393 (19%)
Query: 126 VNESYTLHVPNDRPTANLTAETPWGAMRGLETFSQLVWGRPSRVPVGVYVWDDPIFPHRG 185
V+ +Y L + + A + G GL++ LV S + D P FP+RG
Sbjct: 258 VSGAYELKI--GKKEAQVIGFDQAGVFYGLQSILSLVPSDGSGKIATLDASDAPRFPYRG 315
Query: 186 LLLDTSRNYYGVGDIMRTIYAMSANKMNVFHWHITDSPSFPLNLPSEPGLAAKG------ 239
+ LD +RN++ ++R + M+A K+N FH+H++D + + +P P L G
Sbjct: 316 IFLDVARNFHKKDAVLRLLDQMAAYKLNKFHFHLSDDEGWRIEIPGLPELTEVGGQRCHD 375
Query: 240 ---------SYGDDMQ-----YSPDDVKKIVEFGLDHGVRVIPEIDSPGHTG----SWAE 281
YG +S D I+++ + VIPEID P H S
Sbjct: 376 LSETTCLLPQYGQGPDVYGGFFSRQDYIDIIKYAQARQIEVIPEIDMPAHARAAVVSMEA 435
Query: 282 AYPEIVTC-----ANMFWW--PAESKGEDKLAAEPGTGQLNPLNPKTYQVFKNVISDVVK 334
Y ++ AN F P ++ + LNP + + VI ++ +
Sbjct: 436 RYKKLHAAGKEQEANEFRLVDPTDTSNTTSVQFFNRQSYLNPCLDSSQRFVDKVIGEIAQ 495
Query: 335 MFPE-----PFFHAGADEVT---------------PGC-----------WKTDPTIQSFL 363
M E +H G DE PG W Q+ +
Sbjct: 496 MHKEAGQPIKTWHFGGDEAKNIRLGAGYTDKAKPEPGKGIIDQGNEDKPWAKSQVCQTMI 555
Query: 364 SNG--GSLSQVLEKFVNETFPYIVS--LNRTVIYWEDVLLDGVVKVDSSILDPKYTILQT 419
G + + F E + + ++R + W+D L D S +
Sbjct: 556 KEGKVADMEHLPSYFGQEVSKLVKAHGIDR-MQAWQDGLKDA---ESSKAFATSRVGVNF 611
Query: 420 WN----NGPNNTKKIVDAGYRAIVSSADYYYLD 448
W+ G ++ + GY +VS+ DY Y+D
Sbjct: 612 WDTLYWGGFDSVNDWANKGYEVVVSNPDYVYMD 644
>pdb|1C7S|A Chain A, Beta-N-Acetylhexosaminidase Mutant D539a Complexed With
Di- N-Acetyl-Beta-D-Glucosamine (Chitobiase)
Length = 858
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 75/171 (43%), Gaps = 22/171 (12%)
Query: 126 VNESYTLHVPNDRPTANLTAETPWGAMRGLETFSQLVWGRPSRVPVGVYVWDDPIFPHRG 185
V+ +Y L + + A + G GL++ LV S + D P FP+RG
Sbjct: 258 VSGAYELKI--GKKEAQVIGFDQAGVFYGLQSILSLVPSDGSGKIATLDASDAPRFPYRG 315
Query: 186 LLLDTSRNYYGVGDIMRTIYAMSANKMNVFHWHITDSPSFPLNLPSEPGLAAKG------ 239
+ LD +RN++ ++R + M+A K+N FH+H++D + + +P P L G
Sbjct: 316 IFLDVARNFHKKDAVLRLLDQMAAYKLNKFHFHLSDDEGWRIEIPGLPELTEVGGQRCHD 375
Query: 240 ---------SYGDDMQ-----YSPDDVKKIVEFGLDHGVRVIPEIDSPGHT 276
YG +S D I+++ + VIPEID P H
Sbjct: 376 LSETTCLLPQYGQGPDVYGGFFSRQDYIDIIKYAQARQIEVIPEIDMPAHA 426
>pdb|1C7T|A Chain A, Beta-N-Acetylhexosaminidase Mutant E540d Complexed With
Di- N Acetyl-D-Glucosamine (Chitobiase)
Length = 858
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 75/171 (43%), Gaps = 22/171 (12%)
Query: 126 VNESYTLHVPNDRPTANLTAETPWGAMRGLETFSQLVWGRPSRVPVGVYVWDDPIFPHRG 185
V+ +Y L + + A + G GL++ LV S + D P FP+RG
Sbjct: 258 VSGAYELKI--GKKEAQVIGFDQAGVFYGLQSILSLVPSDGSGKIATLDASDAPRFPYRG 315
Query: 186 LLLDTSRNYYGVGDIMRTIYAMSANKMNVFHWHITDSPSFPLNLPSEPGLAAKG------ 239
+ LD +RN++ ++R + M+A K+N FH+H++D + + +P P L G
Sbjct: 316 IFLDVARNFHKKDAVLRLLDQMAAYKLNKFHFHLSDDEGWRIEIPGLPELTEVGGQRCHD 375
Query: 240 ---------SYGDDMQ-----YSPDDVKKIVEFGLDHGVRVIPEIDSPGHT 276
YG +S D I+++ + VIPEID P H
Sbjct: 376 LSETTCLLPQYGQGPDVYGGFFSRQDYIDIIKYAQARQIEVIPEIDMPAHA 426
>pdb|1YHT|A Chain A, Crystal Structure Analysis Of Dispersin B
Length = 367
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 101/255 (39%), Gaps = 56/255 (21%)
Query: 175 VWDDPIFPHR------GLLLDTSRNYYGVGDIMRTIYAMSANKMNVFHWHITDSPSFP-- 226
V + I+P + GL+LD +R++Y I I +S + N H H +D ++
Sbjct: 4 VKGNSIYPQKTSTKQTGLMLDIARHFYSPEVIKSFIDTISLSGGNFLHLHFSDHENYAIE 63
Query: 227 ---LNLPSEPGLAAK-GSYGDDMQYSP-------DDVKKIVEFGLDHGVRVIPEIDSPGH 275
LN +E + K G Y + P DD+K + G+ +IPE+DSP H
Sbjct: 64 SHLLNQRAENAVQGKDGIYINPYTGKPFLSYRQLDDIKA---YAKAKGIELIPELDSPNH 120
Query: 276 TGSWAEAYPEIVTCANMFWWPAESKGE---DKLAAEPGTGQLNPLNPKTYQVFKNVISDV 332
+ +F + +G L + +++ N + ++++S+V
Sbjct: 121 MTA-------------IFKLVQKDRGVKYLQGLKSRQVDDEIDITNADSITFMQSLMSEV 167
Query: 333 VKMFPE--PFFHAGADEVTPGCWKTDPTIQSFLSNGGSLSQVLEK-----------FVNE 379
+ +F + FH G DE + F++ LS LEK +
Sbjct: 168 IDIFGDTSQHFHIGGDEFGYSV----ESNHEFITYANKLSYFLEKKGLKTRMWNDGLIKN 223
Query: 380 TFPYIVSLNRTVIYW 394
TF I + N + YW
Sbjct: 224 TFEQI-NPNIEITYW 237
>pdb|2YL6|A Chain A, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
Length = 434
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 255 IVEFGLDHGVRVIPEIDSPGHTGSWAEAYPEI 286
++ + D G+ +IP ++SPGH + A E+
Sbjct: 97 LINYAKDKGIGLIPTVNSPGHMDAILNAMKEL 128
>pdb|2YLL|A Chain A, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
Length = 454
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 255 IVEFGLDHGVRVIPEIDSPGHTGSWAEAYPEI 286
++ + D G+ +IP ++SPGH + A E+
Sbjct: 117 LINYAKDKGIGLIPTVNSPGHMDAILNAMKEL 148
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,399,780
Number of Sequences: 62578
Number of extensions: 867796
Number of successful extensions: 1971
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1888
Number of HSP's gapped (non-prelim): 26
length of query: 591
length of database: 14,973,337
effective HSP length: 104
effective length of query: 487
effective length of database: 8,465,225
effective search space: 4122564575
effective search space used: 4122564575
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)