Query 007722
Match_columns 591
No_of_seqs 243 out of 1720
Neff 7.0
Searched_HMMs 46136
Date Thu Mar 28 14:27:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007722.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007722hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2499 Beta-N-acetylhexosamin 100.0 5E-104 1E-108 821.7 41.1 488 35-585 35-542 (542)
2 cd06562 GH20_HexA_HexB-like Be 100.0 5.5E-88 1.2E-92 713.7 33.7 345 181-566 1-348 (348)
3 cd06569 GH20_Sm-chitobiase-lik 100.0 1.1E-85 2.4E-90 713.3 35.2 350 177-541 1-420 (445)
4 cd06563 GH20_chitobiase-like T 100.0 3.4E-85 7.3E-90 695.3 31.6 337 181-555 1-357 (357)
5 cd06570 GH20_chitobiase-like_1 100.0 3.6E-83 7.8E-88 664.6 31.1 309 181-555 1-311 (311)
6 cd06568 GH20_SpHex_like A subg 100.0 1.4E-81 3.1E-86 658.9 30.9 321 181-555 1-329 (329)
7 COG3525 Chb N-acetyl-beta-hexo 100.0 7E-77 1.5E-81 638.6 30.9 414 126-572 204-645 (732)
8 PF00728 Glyco_hydro_20: Glyco 100.0 2.2E-77 4.8E-82 634.7 18.0 335 181-538 1-350 (351)
9 cd02742 GH20_hexosaminidase Be 100.0 4.6E-74 1E-78 597.5 27.5 294 183-537 1-303 (303)
10 cd06564 GH20_DspB_LnbB-like Gl 100.0 1.5E-71 3.3E-76 584.4 26.4 299 182-538 1-326 (326)
11 cd06565 GH20_GcnA-like Glycosy 100.0 2.3E-51 5E-56 426.3 22.6 297 183-537 1-301 (301)
12 PF02838 Glyco_hydro_20b: Glyc 99.7 1.2E-16 2.6E-21 144.7 12.0 122 34-178 2-124 (124)
13 PF14845 Glycohydro_20b2: beta 99.5 6E-14 1.3E-18 128.1 11.8 119 36-161 1-128 (128)
14 PF02638 DUF187: Glycosyl hydr 97.3 0.011 2.5E-07 62.1 17.8 195 182-388 1-220 (311)
15 PF13200 DUF4015: Putative gly 97.1 0.016 3.4E-07 60.9 15.3 172 197-391 12-190 (316)
16 COG1649 Uncharacterized protei 96.8 0.055 1.2E-06 58.7 17.1 148 181-338 45-200 (418)
17 PF07555 NAGidase: beta-N-acet 96.7 0.0097 2.1E-07 62.3 10.4 145 184-387 1-148 (306)
18 PF03648 Glyco_hydro_67N: Glyc 96.6 0.01 2.3E-07 53.6 8.5 90 58-158 22-122 (122)
19 PF14871 GHL6: Hypothetical gl 95.6 0.13 2.9E-06 47.2 10.7 122 201-337 3-124 (132)
20 PF10566 Glyco_hydro_97: Glyco 95.0 0.1 2.3E-06 53.7 8.7 117 193-335 27-149 (273)
21 smart00642 Aamy Alpha-amylase 93.7 0.31 6.7E-06 46.6 8.4 75 196-278 17-97 (166)
22 PF02449 Glyco_hydro_42: Beta- 93.3 0.33 7.2E-06 52.3 8.9 137 195-361 7-150 (374)
23 PRK14706 glycogen branching en 92.4 4.6 9.9E-05 46.9 16.8 126 194-337 163-299 (639)
24 PLN02447 1,4-alpha-glucan-bran 92.3 5.4 0.00012 46.9 17.2 182 196-397 248-446 (758)
25 TIGR02402 trehalose_TreZ malto 92.1 1.4 3E-05 50.1 12.1 120 197-336 110-236 (542)
26 PRK12313 glycogen branching en 92.0 2 4.4E-05 49.7 13.6 127 194-337 166-302 (633)
27 PRK14705 glycogen branching en 92.0 1.4 3E-05 54.4 12.5 121 200-337 768-897 (1224)
28 TIGR01515 branching_enzym alph 91.8 1.7 3.7E-05 50.2 12.5 121 200-337 159-288 (613)
29 PLN02960 alpha-amylase 91.4 1.8 4E-05 51.2 12.1 127 194-336 412-548 (897)
30 PF00150 Cellulase: Cellulase 90.8 1.1 2.4E-05 45.4 8.8 153 182-390 9-165 (281)
31 PRK12568 glycogen branching en 90.8 2.8 6E-05 49.1 12.9 127 194-337 265-401 (730)
32 TIGR02100 glgX_debranch glycog 90.1 1.9 4E-05 50.5 10.9 128 203-337 189-334 (688)
33 PRK10933 trehalose-6-phosphate 89.0 5 0.00011 45.7 13.1 75 196-278 31-108 (551)
34 PRK05402 glycogen branching en 88.5 5.4 0.00012 47.1 13.2 124 194-337 261-397 (726)
35 TIGR02403 trehalose_treC alpha 87.9 1.8 3.9E-05 49.2 8.5 75 196-278 25-102 (543)
36 PRK03705 glycogen debranching 87.4 3.2 6.9E-05 48.3 10.2 126 203-337 184-329 (658)
37 PF00128 Alpha-amylase: Alpha 87.2 0.56 1.2E-05 47.9 3.7 74 197-278 3-79 (316)
38 PLN02784 alpha-amylase 87.2 8.1 0.00017 45.9 13.2 88 184-279 507-596 (894)
39 COG3661 AguA Alpha-glucuronida 86.6 27 0.00058 38.2 15.5 164 126-338 92-279 (684)
40 PLN02361 alpha-amylase 85.4 11 0.00024 41.2 12.6 72 198-277 29-102 (401)
41 PRK14511 maltooligosyl trehalo 85.2 3.5 7.6E-05 49.1 9.1 77 194-278 16-96 (879)
42 TIGR02104 pulA_typeI pullulana 85.1 4.4 9.6E-05 46.7 9.9 128 198-336 164-311 (605)
43 PF02065 Melibiase: Melibiase; 85.0 3.8 8.3E-05 44.6 8.8 129 195-342 55-188 (394)
44 TIGR02401 trehalose_TreY malto 84.9 3.7 8E-05 48.6 9.1 77 194-278 12-92 (825)
45 COG0296 GlgB 1,4-alpha-glucan 84.2 11 0.00024 43.4 12.2 133 186-336 150-295 (628)
46 PRK14510 putative bifunctional 82.3 7.8 0.00017 48.3 10.9 125 202-334 191-333 (1221)
47 TIGR02102 pullulan_Gpos pullul 81.0 20 0.00044 44.1 13.5 128 197-336 479-634 (1111)
48 cd06593 GH31_xylosidase_YicI Y 79.6 12 0.00025 39.2 9.8 138 179-334 7-147 (308)
49 TIGR02456 treS_nterm trehalose 79.1 6.5 0.00014 44.6 8.2 75 196-278 26-103 (539)
50 PRK09441 cytoplasmic alpha-amy 78.3 7.5 0.00016 43.4 8.3 78 198-277 22-107 (479)
51 PRK10785 maltodextrin glucosid 77.5 8 0.00017 44.6 8.4 79 192-278 171-253 (598)
52 cd06594 GH31_glucosidase_YihQ 73.9 16 0.00036 38.5 9.0 141 179-333 7-152 (317)
53 PLN02877 alpha-amylase/limit d 72.7 46 0.001 40.4 13.1 29 249-278 465-493 (970)
54 PLN00145 tyrosine/nicotianamin 72.4 7.8 0.00017 42.6 6.4 23 245-267 205-227 (430)
55 PLN00196 alpha-amylase; Provis 72.2 15 0.00031 40.7 8.4 73 197-278 43-119 (428)
56 PRK14507 putative bifunctional 70.1 15 0.00033 46.9 8.8 76 194-277 754-833 (1693)
57 PF01055 Glyco_hydro_31: Glyco 69.7 16 0.00035 40.1 8.2 141 179-338 26-171 (441)
58 cd06592 GH31_glucosidase_KIAA1 69.2 29 0.00064 36.3 9.6 124 193-334 25-152 (303)
59 KOG0259 Tyrosine aminotransfer 68.9 7.8 0.00017 41.6 5.1 32 244-276 213-244 (447)
60 COG0436 Aspartate/tyrosine/aro 68.6 13 0.00029 40.4 7.1 24 245-268 178-201 (393)
61 cd06591 GH31_xylosidase_XylS X 68.4 29 0.00064 36.5 9.5 137 179-332 7-144 (319)
62 TIGR02103 pullul_strch alpha-1 67.2 92 0.002 37.8 14.0 117 250-399 404-528 (898)
63 PLN03244 alpha-amylase; Provis 65.1 16 0.00034 43.2 6.9 82 246-336 437-523 (872)
64 TIGR03234 OH-pyruv-isom hydrox 64.2 11 0.00024 37.9 5.2 101 155-270 41-143 (254)
65 PLN02187 rooty/superroot1 64.2 21 0.00046 39.7 7.7 23 245-267 219-241 (462)
66 TIGR02455 TreS_stutzeri trehal 62.5 21 0.00045 41.2 7.2 68 201-277 77-156 (688)
67 cd06598 GH31_transferase_CtsZ 61.0 40 0.00086 35.6 8.7 141 179-334 7-152 (317)
68 PRK09276 LL-diaminopimelate am 60.4 30 0.00066 36.9 7.9 23 245-267 181-203 (385)
69 PLN00143 tyrosine/nicotianamin 58.9 24 0.00052 38.4 6.9 23 245-267 185-207 (409)
70 PRK06290 aspartate aminotransf 58.6 23 0.00049 38.7 6.6 23 245-267 194-216 (410)
71 PRK09147 succinyldiaminopimela 58.5 26 0.00057 37.7 7.1 23 245-267 181-203 (396)
72 cd00019 AP2Ec AP endonuclease 58.3 13 0.00029 37.9 4.5 62 195-270 82-143 (279)
73 PRK09505 malS alpha-amylase; R 57.8 34 0.00074 40.1 8.2 80 197-277 229-318 (683)
74 PF13199 Glyco_hydro_66: Glyco 57.5 18 0.0004 41.2 5.7 201 176-398 97-310 (559)
75 KOG0470 1,4-alpha-glucan branc 56.5 13 0.00029 43.0 4.4 123 200-335 257-393 (757)
76 COG2100 Predicted Fe-S oxidore 54.4 52 0.0011 34.9 7.9 98 140-267 162-259 (414)
77 PRK10658 putative alpha-glucos 53.8 94 0.002 36.4 10.9 141 179-335 264-407 (665)
78 PRK07681 aspartate aminotransf 53.4 40 0.00087 36.4 7.5 23 245-267 181-203 (399)
79 COG1874 LacA Beta-galactosidas 53.2 1.1E+02 0.0024 35.8 11.1 133 195-353 27-167 (673)
80 PF05913 DUF871: Bacterial pro 52.8 29 0.00064 37.3 6.1 63 185-270 3-67 (357)
81 PTZ00433 tyrosine aminotransfe 52.3 41 0.00088 36.5 7.3 23 245-267 192-214 (412)
82 PLN02607 1-aminocyclopropane-1 51.8 74 0.0016 35.2 9.3 62 189-267 175-237 (447)
83 PLN02656 tyrosine transaminase 51.3 39 0.00085 36.6 7.0 23 245-267 184-206 (409)
84 PTZ00377 alanine aminotransfer 50.8 39 0.00085 37.6 7.0 23 245-267 233-255 (481)
85 PRK10626 hypothetical protein; 50.7 47 0.001 33.7 6.8 49 35-83 31-83 (239)
86 KOG3698 Hyaluronoglucosaminida 50.6 21 0.00045 40.2 4.5 69 192-275 27-98 (891)
87 cd00452 KDPG_aldolase KDPG and 49.9 15 0.00033 35.5 3.2 84 196-280 14-114 (190)
88 PRK09257 aromatic amino acid a 49.3 75 0.0016 34.2 8.7 24 245-268 187-210 (396)
89 COG0134 TrpC Indole-3-glycerol 49.1 22 0.00048 36.3 4.2 74 246-344 139-212 (254)
90 PRK10076 pyruvate formate lyas 48.9 76 0.0017 31.5 8.0 69 195-267 142-210 (213)
91 PRK06348 aspartate aminotransf 48.8 48 0.001 35.6 7.1 23 245-267 177-199 (384)
92 cd06602 GH31_MGAM_SI_GAA This 48.8 3.6E+02 0.0078 28.7 14.6 125 193-335 19-153 (339)
93 PF01261 AP_endonuc_2: Xylose 48.7 51 0.0011 31.3 6.7 63 197-270 70-132 (213)
94 PF14701 hDGE_amylase: glucano 48.5 66 0.0014 35.4 8.0 84 197-286 21-115 (423)
95 TIGR03540 DapC_direct LL-diami 48.4 64 0.0014 34.4 8.0 23 245-267 179-201 (383)
96 PRK08636 aspartate aminotransf 48.3 77 0.0017 34.2 8.7 23 245-267 190-212 (403)
97 PRK05942 aspartate aminotransf 47.5 59 0.0013 34.9 7.6 23 245-267 185-207 (394)
98 TIGR01531 glyc_debranch glycog 46.6 65 0.0014 40.6 8.3 86 193-286 126-223 (1464)
99 cd06565 GH20_GcnA-like Glycosy 46.5 27 0.00059 36.5 4.6 63 150-216 11-78 (301)
100 PRK09265 aminotransferase AlaT 46.2 86 0.0019 33.8 8.6 23 245-267 183-205 (404)
101 COG3056 Uncharacterized lipopr 46.2 72 0.0016 31.0 6.8 38 109-150 114-151 (204)
102 PRK07590 L,L-diaminopimelate a 45.5 1.1E+02 0.0024 33.0 9.4 23 245-267 191-213 (409)
103 PRK09856 fructoselysine 3-epim 45.1 68 0.0015 32.5 7.3 64 196-272 88-151 (275)
104 PRK06552 keto-hydroxyglutarate 44.9 84 0.0018 31.3 7.6 81 196-280 23-126 (213)
105 TIGR03538 DapC_gpp succinyldia 44.9 1.2E+02 0.0025 32.6 9.4 23 245-267 180-202 (393)
106 KOG0258 Alanine aminotransfera 44.6 1.2E+02 0.0026 33.1 8.9 103 140-268 138-253 (475)
107 PLN02231 alanine transaminase 44.4 1.1E+02 0.0023 34.9 9.3 24 245-268 286-309 (534)
108 PRK07324 transaminase; Validat 44.4 79 0.0017 33.8 7.9 24 245-268 168-191 (373)
109 PRK08960 hypothetical protein; 43.6 42 0.0009 36.0 5.6 23 245-267 180-202 (387)
110 PRK09275 aspartate aminotransf 43.3 53 0.0012 37.3 6.6 23 245-267 256-280 (527)
111 COG1523 PulA Type II secretory 42.8 1.5E+02 0.0032 35.0 10.1 122 203-336 205-351 (697)
112 PLN02376 1-aminocyclopropane-1 42.7 94 0.002 35.0 8.5 23 245-267 214-236 (496)
113 PRK08068 transaminase; Reviewe 42.7 59 0.0013 34.9 6.6 23 245-267 182-204 (389)
114 PF12971 NAGLU_N: Alpha-N-acet 42.1 65 0.0014 27.1 5.4 44 110-160 19-63 (86)
115 PRK05301 pyrroloquinoline quin 41.8 82 0.0018 33.9 7.6 59 192-276 43-101 (378)
116 PRK07337 aminotransferase; Val 41.5 80 0.0017 33.8 7.4 24 245-268 178-201 (388)
117 PF13380 CoA_binding_2: CoA bi 41.3 60 0.0013 28.9 5.4 98 141-267 3-106 (116)
118 PRK13957 indole-3-glycerol-pho 40.9 29 0.00064 35.4 3.7 36 246-281 134-169 (247)
119 TIGR03586 PseI pseudaminic aci 40.7 92 0.002 33.2 7.5 77 196-276 15-103 (327)
120 PRK05839 hypothetical protein; 40.5 1.6E+02 0.0035 31.4 9.5 23 245-267 170-192 (374)
121 PRK05718 keto-hydroxyglutarate 40.4 36 0.00079 33.8 4.2 78 195-276 24-121 (212)
122 PRK00278 trpC indole-3-glycero 40.3 85 0.0018 32.1 7.0 46 203-273 125-170 (260)
123 PRK13355 bifunctional HTH-doma 39.0 89 0.0019 35.2 7.6 23 245-267 296-318 (517)
124 PF01212 Beta_elim_lyase: Beta 38.6 84 0.0018 32.8 6.8 59 193-267 104-162 (290)
125 PF14542 Acetyltransf_CG: GCN5 38.6 39 0.00084 27.9 3.5 37 247-286 39-75 (78)
126 TIGR02109 PQQ_syn_pqqE coenzym 38.5 89 0.0019 33.2 7.2 59 192-276 34-92 (358)
127 KOG0256 1-aminocyclopropane-1- 37.7 1.5E+02 0.0032 32.6 8.3 66 186-268 198-264 (471)
128 cd06600 GH31_MGAM-like This fa 37.7 2.6E+02 0.0056 29.4 10.4 122 193-334 19-147 (317)
129 PRK01060 endonuclease IV; Prov 37.4 1.3E+02 0.0027 30.7 7.9 59 185-266 5-63 (281)
130 PLN02450 1-aminocyclopropane-1 36.4 1.2E+02 0.0026 33.7 8.1 23 245-267 206-228 (468)
131 cd06604 GH31_glucosidase_II_Ma 34.8 1.9E+02 0.0042 30.6 9.0 126 193-334 19-147 (339)
132 PLN00175 aminotransferase fami 34.8 1.2E+02 0.0026 33.0 7.5 23 245-267 202-224 (413)
133 PRK08363 alanine aminotransfer 34.4 96 0.0021 33.3 6.7 23 245-267 181-203 (398)
134 TIGR01264 tyr_amTase_E tyrosin 34.4 94 0.002 33.4 6.7 23 245-267 183-205 (401)
135 PF01301 Glyco_hydro_35: Glyco 33.9 1.6E+02 0.0034 31.2 8.0 79 175-270 4-83 (319)
136 cd06603 GH31_GANC_GANAB_alpha 33.7 2.1E+02 0.0045 30.4 9.0 125 193-334 19-147 (339)
137 TIGR00542 hxl6Piso_put hexulos 32.7 56 0.0012 33.4 4.3 61 197-270 93-153 (279)
138 PF01565 FAD_binding_4: FAD bi 32.6 49 0.0011 29.8 3.5 28 248-277 9-36 (139)
139 COG0366 AmyA Glycosidases [Car 32.3 1.1E+02 0.0024 33.7 6.9 73 197-277 28-103 (505)
140 TIGR01866 cas_Csn2 CRISPR-asso 32.1 1E+02 0.0022 30.9 5.8 64 181-267 132-195 (216)
141 cd06589 GH31 The enzymes of gl 31.9 82 0.0018 32.1 5.4 82 179-272 7-88 (265)
142 PF07488 Glyco_hydro_67M: Glyc 31.8 6.5E+02 0.014 26.7 11.7 120 172-338 12-150 (328)
143 TIGR03569 NeuB_NnaB N-acetylne 31.7 1.2E+02 0.0026 32.3 6.7 74 196-273 14-99 (329)
144 COG2100 Predicted Fe-S oxidore 31.4 1.2E+02 0.0027 32.2 6.4 96 140-263 189-284 (414)
145 PF13204 DUF4038: Protein of u 31.4 1.4E+02 0.0029 31.2 6.9 69 196-267 28-105 (289)
146 PRK09997 hydroxypyruvate isome 31.3 71 0.0015 32.2 4.8 102 154-270 41-144 (258)
147 PRK06015 keto-hydroxyglutarate 31.0 73 0.0016 31.5 4.6 78 196-277 14-111 (201)
148 COG1313 PflX Uncharacterized F 30.6 95 0.0021 32.5 5.4 59 200-268 273-333 (335)
149 TIGR01265 tyr_nico_aTase tyros 30.5 1.2E+02 0.0025 32.8 6.5 24 245-268 184-207 (403)
150 PRK09148 aminotransferase; Val 30.3 83 0.0018 34.1 5.4 23 245-267 180-202 (405)
151 PRK08175 aminotransferase; Val 29.9 1.1E+02 0.0025 32.8 6.3 24 245-268 179-202 (395)
152 COG1168 MalY Bifunctional PLP- 29.9 53 0.0011 35.5 3.5 24 245-268 173-196 (388)
153 PF04202 Mfp-3: Foot protein 3 29.6 43 0.00093 26.9 2.1 23 11-33 5-27 (71)
154 PRK02308 uvsE putative UV dama 29.6 6.8E+02 0.015 26.3 13.3 23 245-267 86-108 (303)
155 TIGR01182 eda Entner-Doudoroff 29.2 67 0.0014 31.8 4.0 82 196-281 18-119 (204)
156 PRK10340 ebgA cryptic beta-D-g 29.2 2.1E+02 0.0046 35.4 9.0 120 194-347 351-478 (1021)
157 PRK14456 ribosomal RNA large s 29.0 2.9E+02 0.0063 29.9 9.1 118 127-274 201-320 (368)
158 PRK10426 alpha-glucosidase; Pr 29.0 3.3E+02 0.0073 31.7 10.2 140 179-331 205-347 (635)
159 TIGR03801 asp_4_decarbox aspar 27.7 2.1E+02 0.0046 32.5 8.1 23 245-267 255-279 (521)
160 KOG0462 Elongation factor-type 27.4 44 0.00096 37.8 2.5 43 248-290 92-150 (650)
161 TIGR03849 arch_ComA phosphosul 27.1 73 0.0016 32.3 3.9 103 195-331 9-112 (237)
162 COG3589 Uncharacterized conser 27.0 1.4E+02 0.0031 31.8 6.0 57 196-271 14-70 (360)
163 cd01299 Met_dep_hydrolase_A Me 26.8 3.2E+02 0.0069 28.5 8.9 63 196-270 118-180 (342)
164 PF14488 DUF4434: Domain of un 26.3 5.4E+02 0.012 24.4 9.5 70 194-270 16-85 (166)
165 PLN02635 disproportionating en 26.1 94 0.002 35.4 4.9 104 246-357 220-350 (538)
166 COG0113 HemB Delta-aminolevuli 26.0 4.9E+02 0.011 27.5 9.6 71 195-275 14-86 (330)
167 PRK07550 hypothetical protein; 25.6 2.2E+02 0.0047 30.4 7.6 23 245-267 178-200 (386)
168 cd07937 DRE_TIM_PC_TC_5S Pyruv 25.5 4.7E+02 0.01 26.9 9.6 61 194-279 87-150 (275)
169 PRK08361 aspartate aminotransf 25.3 2E+02 0.0044 30.7 7.3 23 245-267 181-203 (391)
170 TIGR03537 DapC succinyldiamino 25.2 81 0.0018 33.2 4.1 23 245-267 151-173 (350)
171 PF15632 ATPgrasp_Ter: ATP-gra 25.1 83 0.0018 33.5 4.0 57 249-328 52-108 (329)
172 PF02679 ComA: (2R)-phospho-3- 25.0 1.4E+02 0.003 30.5 5.4 51 198-271 84-134 (244)
173 smart00518 AP2Ec AP endonuclea 24.4 2.8E+02 0.0061 27.9 7.8 60 185-267 3-62 (273)
174 PRK14508 4-alpha-glucanotransf 24.3 1.1E+02 0.0024 34.6 5.0 104 246-357 194-324 (497)
175 PF09183 DUF1947: Domain of un 24.0 47 0.001 26.7 1.5 23 191-213 1-24 (65)
176 PRK13209 L-xylulose 5-phosphat 24.0 83 0.0018 32.0 3.8 61 197-270 98-158 (283)
177 COG1167 ARO8 Transcriptional r 23.9 4.3E+02 0.0092 29.4 9.6 30 245-275 242-271 (459)
178 PF03102 NeuB: NeuB family; I 23.9 72 0.0016 32.4 3.2 23 246-268 52-74 (241)
179 PLN03059 beta-galactosidase; P 23.8 6.5E+02 0.014 30.4 11.2 62 195-269 56-117 (840)
180 PRK13210 putative L-xylulose 5 23.7 92 0.002 31.6 4.0 62 196-270 92-153 (284)
181 PRK13125 trpA tryptophan synth 23.4 1.6E+02 0.0035 29.6 5.7 52 197-272 87-138 (244)
182 PRK14467 ribosomal RNA large s 23.3 1.5E+02 0.0032 31.9 5.5 55 196-269 266-324 (348)
183 PRK11627 hypothetical protein; 23.2 5.1E+02 0.011 25.4 8.8 22 17-39 9-30 (192)
184 PTZ00376 aspartate aminotransf 23.1 3.6E+02 0.0078 29.0 8.7 23 245-267 191-213 (404)
185 TIGR03849 arch_ComA phosphosul 23.1 2.5E+02 0.0054 28.6 6.8 51 198-271 71-121 (237)
186 PRK11145 pflA pyruvate formate 23.1 1.5E+02 0.0033 29.5 5.5 68 197-267 178-245 (246)
187 PTZ00372 endonuclease 4-like p 22.8 1.2E+02 0.0025 33.5 4.7 85 175-269 297-390 (413)
188 PRK07114 keto-hydroxyglutarate 22.5 1.5E+02 0.0032 29.8 5.0 79 196-278 25-127 (222)
189 PF03198 Glyco_hydro_72: Gluca 22.2 4.9E+02 0.011 27.6 8.9 54 197-276 52-105 (314)
190 PF02679 ComA: (2R)-phospho-3- 22.2 79 0.0017 32.2 3.1 69 178-277 8-76 (244)
191 PLN02950 4-alpha-glucanotransf 22.1 1.2E+02 0.0026 36.9 5.1 92 250-349 461-571 (909)
192 PRK09427 bifunctional indole-3 22.1 90 0.0019 34.8 3.7 40 246-285 142-181 (454)
193 PRK07366 succinyldiaminopimela 22.0 1.4E+02 0.0029 32.0 5.1 23 245-267 180-202 (388)
194 PRK05764 aspartate aminotransf 21.7 1.4E+02 0.003 31.8 5.1 24 245-268 179-202 (393)
195 cd06599 GH31_glycosidase_Aec37 21.3 8.2E+02 0.018 25.6 10.7 124 197-333 28-154 (317)
196 PF07745 Glyco_hydro_53: Glyco 21.2 1E+03 0.022 25.4 11.7 138 201-388 27-167 (332)
197 PRK13802 bifunctional indole-3 21.1 98 0.0021 36.4 3.9 41 246-286 143-183 (695)
198 COG0826 Collagenase and relate 21.0 1.3E+02 0.0028 32.3 4.6 35 246-280 45-79 (347)
199 PRK14465 ribosomal RNA large s 20.4 2.8E+02 0.006 29.8 6.9 101 140-269 190-292 (342)
200 PRK14453 chloramphenicol/florf 20.3 1.9E+02 0.0041 31.1 5.6 55 196-267 262-323 (347)
201 TIGR03128 RuMP_HxlA 3-hexulose 20.0 2.9E+02 0.0063 26.6 6.6 46 203-274 68-113 (206)
202 PRK08056 threonine-phosphate d 20.0 3.2E+02 0.0069 28.8 7.4 23 245-267 157-179 (356)
No 1
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.2e-104 Score=821.67 Aligned_cols=488 Identities=43% Similarity=0.758 Sum_probs=409.4
Q ss_pred CcccCCcEEEEeCCeeeEEcCCC-eEEEeC------CCChHHHHHHHHHHHHHHhhc--CCCCccCCCCCCCCCCCCCCC
Q 007722 35 DVWPKPRLLRWAPLHQLSLLSPS-FTIASP------YDHPHLSSAVSRYLTLIKTEH--HLPSSVNNPLTATSSPPPPPS 105 (591)
Q Consensus 35 ~l~P~P~~~~~~~~~~~~~l~~~-~~i~~~------~~~~~l~~a~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~ 105 (591)
.+||.|+.+.+++. |.++ +.+..+ ..+..+..+++||...|+... ..+. +. ..... .
T Consensus 35 ~lWP~P~~~~~~~~-----l~~~i~~~~~~~~~~~~~~~~il~a~~~ry~~~i~~~~~~~~p~--~~--~~~~~-----~ 100 (542)
T KOG2499|consen 35 ALWPLPRTFSCGDE-----LAPEIFYSQIDINLGAGKGCAILRAAFDRYMNIIFGRVEWDPPL--LS--FHVKL-----G 100 (542)
T ss_pred ccccCCcccccccc-----ccccccceeecccccCCcchhHHHHHHHHHhhhhhcccccCCcc--ce--eeeec-----c
Confidence 69999999988774 2222 222211 235789999999999998632 1121 00 00111 1
Q ss_pred CCCccEEEEEcc--CCCCCCCCCCcceEEEeeCCCCcEEEEecChhhhhHHHHHHHHHhcCC---CcccccceEEecCCC
Q 007722 106 PPLQSLHIFIHR--LHAPLHHGVNESYTLHVPNDRPTANLTAETPWGAMRGLETFSQLVWGR---PSRVPVGVYVWDDPI 180 (591)
Q Consensus 106 ~~~~~i~i~~~~--~~~~l~~~~~E~Y~L~i~~~~~~i~I~a~~~~G~~~g~~Tl~Ql~~~~---~~~~p~~~~I~D~P~ 180 (591)
.....+.++++. +..++..+.+|+|+|.|+.+...+.|.|++.+|++||++||.||+.++ +..++....|.|+|+
T Consensus 101 ~~~~~~~~~~~~~c~s~p~l~~~dEsYtL~V~~~~~~a~i~A~tvwGAlrglETfSqLv~~d~~~~~~~~~~~~I~D~Pr 180 (542)
T KOG2499|consen 101 GEAALITLTVTVECPSLPTLHGVDESYTLVVSTTATFAVILANTVWGALRGLETFSQLVWGDSIGGLFMIATAYIQDKPR 180 (542)
T ss_pred ceEEEEEEeecCCCCCcCcccccccceEEEeecCcceEEEeehhHHHHHHHHHHHHHHheeccCCceEEeeeeeEeccCC
Confidence 111223333332 223444556999999998666789999999999999999999999842 233444789999999
Q ss_pred CCcccceeCCCCCCCChHHHHHHHHHHHHCCCcEEEEEecCCCCCcccCCCCCCcccCCCCCCCCCCCHHHHHHHHHHHH
Q 007722 181 FPHRGLLLDTSRNYYGVGDIMRTIYAMSANKMNVFHWHITDSPSFPLNLPSEPGLAAKGSYGDDMQYSPDDVKKIVEFGL 260 (591)
Q Consensus 181 f~~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lhlHltDd~~frle~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~ 260 (591)
|+|||+|||+||||+|++.||+.||.||+.|+|+||||++|+|+||+|++++|+|..+|+|++.+.||.+|++|||+||+
T Consensus 181 F~hRGlLlDTSRhylpv~~IkrtLeaMa~nKLNVlHWHivDs~SFPle~~~~PeL~~kGaYs~~~vYT~eDv~evV~yar 260 (542)
T KOG2499|consen 181 FGHRGLLLDTSRHYLPVKVIKRTLEAMAANKLNVLHWHIVDSQSFPLESPTFPELHRKGAYSPRHVYTREDVSEVVEYAR 260 (542)
T ss_pred CcccceEEecccceecHHHHHHHHHHHHhhhhceeEEEeecCCCCccccCCchhhhhcCCCCcceeecHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCEEEEccCCCCchhhHHHhCchhhhhcccccCcCCCCCCcccccCCCCCcCCCCChhHHHHHHHHHHHHHHhCCCCc
Q 007722 261 DHGVRVIPEIDSPGHTGSWAEAYPEIVTCANMFWWPAESKGEDKLAAEPGTGQLNPLNPKTYQVFKNVISDVVKMFPEPF 340 (591)
Q Consensus 261 ~rgI~VIPEID~PGH~~a~~~~~pel~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~ll~Ev~~lF~~~~ 340 (591)
.|||+|+||||+|||+++|..+||++.. | .|. +.+.++++++|||+++.||+|+++++.||.+.||..+
T Consensus 261 lRGIRVlpEfD~PgHt~sWg~g~~~fl~-------p---~~~-~~~~~~~~gplnP~~n~tydvls~i~~dv~evFp~~~ 329 (542)
T KOG2499|consen 261 LRGIRVLPEFDTPGHTGSWGPGYPDFLT-------P---CWS-SFEVQPPFGPLNPTNNHTYDVLSEIFEDVSEVFPDEF 329 (542)
T ss_pred hccceeeecccCCcccccccCCCCcccC-------C---ccc-ccccCCCCcCCCCCchhHHHHHHHHHHHHHHhCcHHH
Confidence 9999999999999999999999999532 1 121 2445677899999999999999999999999999999
Q ss_pred eecCCCCCCCCCCCCCHHHHHHHHcCC---CHHHHHHHHHHHHHHHHHhcCCeEEEeccccccCcccccCcCCCCCCEEE
Q 007722 341 FHAGADEVTPGCWKTDPTIQSFLSNGG---SLSQVLEKFVNETFPYIVSLNRTVIYWEDVLLDGVVKVDSSILDPKYTIL 417 (591)
Q Consensus 341 iHIGgDEv~~~~w~~~p~~~~~m~~~g---~~~~l~~~f~~~~~~~l~~~gk~~~~W~d~~~~~~~~~~~~~lp~~~~iv 417 (591)
||+|||||...||+++|++|+||++.| +..+++..|+++..+++.+.+++++.|+|.+.+.. .++ .++|+
T Consensus 330 ~HlGGDEV~~~CW~s~~~Iq~fM~~kGfg~~~~~~~~~~~~~~~~i~~s~~~~~I~Wqevf~n~~------~i~-p~tii 402 (542)
T KOG2499|consen 330 FHLGGDEVSTPCWKSNPEIQDFMRKKGFGLDTKSLERLYIQFLLDILNSWNKTVIVWQEVFDNKR------KID-PRTII 402 (542)
T ss_pred eecCCceeecccccCChHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHhcCceEEEeehhccccc------cCC-CCcee
Confidence 999999999999999999999999987 55678999999999999999999999999997432 234 69999
Q ss_pred EeeCCCC--chHHHHHHhCCcEEEccCCcccccCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCccccccccCCCC-
Q 007722 418 QTWNNGP--NNTKKIVDAGYRAIVSSADYYYLDCGHGGFLGNDSQYDQLVGSDTVSNGGSWCAPFKTWQTIYNYDITYG- 494 (591)
Q Consensus 418 ~~W~~~~--~~~~~~~~~G~~vI~s~~~~~Yld~~~~~~~~~~~~y~~~~~~~~~~~g~~w~~~~~~~~~~Y~~dp~~~- 494 (591)
|.|..+. ....+.+.+||++|+|+..+||||++. | -.+|+++|+.+|..+
T Consensus 403 q~W~~~~~~~~~~k~v~~~~~~ivs~s~~wYLd~~~---------~------------------g~dw~~~Y~~~p~~~~ 455 (542)
T KOG2499|consen 403 QIWKIGTWYPKELKIVTKGYRFIVSNSAAWYLDHIG---------Y------------------GSDWRKVYNTEPLSGM 455 (542)
T ss_pred eeeccCCccHHHHHHHhccCceEEEeccceEeeccc---------c------------------CCChhheeeccccccC
Confidence 9999865 367788999999999999999999541 2 125789999999865
Q ss_pred CChhhhcccceeeeeccccCCCccchhhhhhhHHHHHHHHhccCCCCcchhhhHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q 007722 495 LSEEKATLVLGGEVALWSEQADPTVLDSRLWPRASAMAEALWSGNRDETGKKRYAEATDRLNEWRHRMVSRGIGAEPIQP 574 (591)
Q Consensus 495 l~~~~~~~ilG~e~~lW~E~~~~~~l~~~i~PR~~a~AE~~Ws~~~~~~~~~~~~~~~~Rl~~~~~rl~~~gi~~~p~~p 574 (591)
.+++++++|+|||+|||+|++|..+++.++|||+.|+|||+||.++ ..++.++.+||..|||||.+|||.++|++|
T Consensus 456 g~~~~k~lVlGGE~cmWgE~vD~t~L~~RlWPRAsA~AERLWS~~~----~~~~~~A~~Rl~~~RcrLv~RGi~A~p~~p 531 (542)
T KOG2499|consen 456 GTPEQKKLVLGGEVCMWGEYVDNTNLESRLWPRASAAAERLWSNKK----VSRLLDAYPRLHLFRCRLVARGIGAQPVQP 531 (542)
T ss_pred CCHHHhhheecceeeeehhhccccccccccccchhHHHHHhhcccc----cchHHHHHHHHHHHHHHHHhcCCCcCCCCC
Confidence 4566778899999999999999999999999999999999999543 356889999999999999999999999999
Q ss_pred cccccCCCccc
Q 007722 575 LWCVRNPGMCN 585 (591)
Q Consensus 575 ~~c~~~~~~c~ 585 (591)
+||.++++.|.
T Consensus 532 ~~C~~~~~~c~ 542 (542)
T KOG2499|consen 532 GWCLQEEGECP 542 (542)
T ss_pred cccccCCCCCC
Confidence 99999999994
No 2
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=100.00 E-value=5.5e-88 Score=713.66 Aligned_cols=345 Identities=49% Similarity=0.899 Sum_probs=307.7
Q ss_pred CCcccceeCCCCCCCChHHHHHHHHHHHHCCCcEEEEEecCCCCCcccCCCCCCcccCCCCCCCCCCCHHHHHHHHHHHH
Q 007722 181 FPHRGLLLDTSRNYYGVGDIMRTIYAMSANKMNVFHWHITDSPSFPLNLPSEPGLAAKGSYGDDMQYSPDDVKKIVEFGL 260 (591)
Q Consensus 181 f~~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lhlHltDd~~frle~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~ 260 (591)
|+|||+|||+||||+|+++||++||.||++|||+||||||||||||+|+++||+||++|+|+++++||++|++|||+||+
T Consensus 1 f~~RG~mlDvaR~f~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~~~~YT~~di~eiv~yA~ 80 (348)
T cd06562 1 FPHRGLLLDTSRHFLSVDSIKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSPSEVYTPEDVKEIVEYAR 80 (348)
T ss_pred CCccceeeeccccCCCHHHHHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCCCceECHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCEEEEccCCCCchhhHHHhCchhhhhcccccCcCCCCCCcccccCCCCCcCCCCChhHHHHHHHHHHHHHHhCCCCc
Q 007722 261 DHGVRVIPEIDSPGHTGSWAEAYPEIVTCANMFWWPAESKGEDKLAAEPGTGQLNPLNPKTYQVFKNVISDVVKMFPEPF 340 (591)
Q Consensus 261 ~rgI~VIPEID~PGH~~a~~~~~pel~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~ll~Ev~~lF~~~~ 340 (591)
+|||+||||||+|||+.+++++||+|..+... .|.. .+.++..++|||++|+|++|+++|++|++++||++|
T Consensus 81 ~rgI~vIPEID~PGH~~a~~~~~p~l~~~~~~-------~~~~-~~~~~~~~~L~~~~~~t~~fl~~vl~E~~~lF~~~~ 152 (348)
T cd06562 81 LRGIRVIPEIDTPGHTGSWGQGYPELLTGCYA-------VWRK-YCPEPPCGQLNPTNPKTYDFLKTLFKEVSELFPDKY 152 (348)
T ss_pred HcCCEEEEeccCchhhHHHHHhChhhhCCCCc-------cccc-cccCCCCccccCCChhHHHHHHHHHHHHHHhcCCcc
Confidence 99999999999999999999999999643211 1221 223455678999999999999999999999999999
Q ss_pred eecCCCCCCCCCCCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHhcCCeEEEeccccccCcccccCcCCCCCCEEEE
Q 007722 341 FHAGADEVTPGCWKTDPTIQSFLSNGG--SLSQVLEKFVNETFPYIVSLNRTVIYWEDVLLDGVVKVDSSILDPKYTILQ 418 (591)
Q Consensus 341 iHIGgDEv~~~~w~~~p~~~~~m~~~g--~~~~l~~~f~~~~~~~l~~~gk~~~~W~d~~~~~~~~~~~~~lp~~~~iv~ 418 (591)
|||||||+...||.++|.|+++|+++| +..+++.+|++++.++|+++||++++|+|++.+.+ ..++ ++++|+
T Consensus 153 iHiGgDE~~~~~w~~~p~~~~~m~~~g~~~~~~l~~~f~~~~~~~l~~~Gk~~i~W~d~~~~~~-----~~~~-~~~iv~ 226 (348)
T cd06562 153 FHLGGDEVNFNCWNSNPEIQKFMKKNNGTDYSDLESYFIQRALDIVRSLGKTPIVWEEVFDNGV-----YLLP-KDTIVQ 226 (348)
T ss_pred eEeecCCCCCCcccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCeEEEeeecccCCC-----ccCC-CCeEEE
Confidence 999999999999999999999999877 88999999999999999999999999999987543 2355 899999
Q ss_pred eeCCCCchHHHHHHhCCcEEEccCCcccccCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCccccccccCCC-CCCh
Q 007722 419 TWNNGPNNTKKIVDAGYRAIVSSADYYYLDCGHGGFLGNDSQYDQLVGSDTVSNGGSWCAPFKTWQTIYNYDITY-GLSE 497 (591)
Q Consensus 419 ~W~~~~~~~~~~~~~G~~vI~s~~~~~Yld~~~~~~~~~~~~y~~~~~~~~~~~g~~w~~~~~~~~~~Y~~dp~~-~l~~ 497 (591)
.|+++. .+.+++++||+||+|+++++|||++++++. .++.+|+++|+++|.. ..++
T Consensus 227 ~W~~~~-~~~~~~~~G~~vI~s~~~~~Yld~~~~~~~----------------------~~~~~~~~~y~~~p~~~~~~~ 283 (348)
T cd06562 227 VWGGSD-ELKNVLAAGYKVILSSYDFWYLDCGFGGWV----------------------GPGNDWCDPYKNWPRIYSGTP 283 (348)
T ss_pred ECCCcH-HHHHHHHCCCCEEEeCCCcEEEeecCCCCC----------------------CCCCcHhhhhcCCCCCCCCCh
Confidence 999754 788999999999999999999999864311 1245678888888753 2333
Q ss_pred hhhcccceeeeeccccCCCccchhhhhhhHHHHHHHHhccCCCCcchhhhHHHHHHHHHHHHHHHHHCC
Q 007722 498 EKATLVLGGEVALWSEQADPTVLDSRLWPRASAMAEALWSGNRDETGKKRYAEATDRLNEWRHRMVSRG 566 (591)
Q Consensus 498 ~~~~~ilG~e~~lW~E~~~~~~l~~~i~PR~~a~AE~~Ws~~~~~~~~~~~~~~~~Rl~~~~~rl~~~g 566 (591)
+..++|+|+|+|||+|++++..+++++|||++|+||++|+++.. +++++|.+||..+++||.+||
T Consensus 284 ~~~~~ilG~~~~lW~E~~~~~~~~~~~~PR~~a~AE~~W~~~~~----~~~~~f~~Rl~~~~~~l~~~g 348 (348)
T cd06562 284 EQKKLVLGGEACMWGEQVDDTNLDQRLWPRASALAERLWSGPSD----TNLTDAEPRLVEFRCRLVRRG 348 (348)
T ss_pred hhcccEEEEEEEeeeeeeCccceeehhhhhHHHHHHHhhCCCcC----CCHHHHHHHHHHHHHHHHhCc
Confidence 56789999999999999988899999999999999999998763 458999999999999999997
No 3
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=100.00 E-value=1.1e-85 Score=713.30 Aligned_cols=350 Identities=26% Similarity=0.467 Sum_probs=296.2
Q ss_pred cCCCCCcccceeCCCCCCCChHHHHHHHHHHHHCCCcEEEEEecCCCCCcccCCCCCCcccCCCCCC-------------
Q 007722 177 DDPIFPHRGLLLDTSRNYYGVGDIMRTIYAMSANKMNVFHWHITDSPSFPLNLPSEPGLAAKGSYGD------------- 243 (591)
Q Consensus 177 D~P~f~~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lhlHltDd~~frle~~~~P~Lt~~ga~~~------------- 243 (591)
|+|||+|||+|||+||||+|+++||++||.||++|||+||||||||||||+|+++||+||++|+|+.
T Consensus 1 D~Prf~~RGlmLDvaR~f~~~~~ik~~Id~ma~~K~N~lHlHLtDdqgwriei~~~P~Lt~~ga~r~~~~~~~~~~~~~~ 80 (445)
T cd06569 1 DAPRFEYRGMHLDVARNFHSKETVLKLLDQMAAYKLNKLHLHLTDDEGWRLEIPGLPELTEVGAKRCHDLSETTCLLPQL 80 (445)
T ss_pred CCCCCcccceeeeccCCCCCHHHHHHHHHHHHHhCCceEEEEeecCCCcceeccCCchhhhccccccccccccccccccc
Confidence 8999999999999999999999999999999999999999999999999999999999999999842
Q ss_pred ----------CCCCCHHHHHHHHHHHHhcCCEEEEccCCCCchhhHHHh----Cchhhhhccc-----ccCcCCCCCCcc
Q 007722 244 ----------DMQYSPDDVKKIVEFGLDHGVRVIPEIDSPGHTGSWAEA----YPEIVTCANM-----FWWPAESKGEDK 304 (591)
Q Consensus 244 ----------~~~YT~~ei~eiv~yA~~rgI~VIPEID~PGH~~a~~~~----~pel~~~~~~-----~~~~~~~~~~~~ 304 (591)
+++||++||+|||+||++|||+||||||+|||+.+++++ ||+|..+... +.+.+..+....
T Consensus 81 ~~~~~~~~~~~g~YT~~di~eiv~yA~~rgI~VIPEID~PGH~~a~l~a~~~~yp~l~~~g~~~~~~~~~~~d~~~~~~~ 160 (445)
T cd06569 81 GSGPDTNNSGSGYYSRADYIEILKYAKARHIEVIPEIDMPGHARAAIKAMEARYRKLMAAGKPAEAEEYRLSDPADTSQY 160 (445)
T ss_pred ccCcccCcccCCccCHHHHHHHHHHHHHcCCEEEEccCCchhHHHHHHhhhccchhhhccCCccccccccccCccccccc
Confidence 478999999999999999999999999999999999886 8998654321 111111111111
Q ss_pred cccC-CCCCcCCCCChhHHHHHHHHHHHHHHhC-----CCCceecCCCCCCCCCCCCCHHHH--HHHHcCC--CHHHHHH
Q 007722 305 LAAE-PGTGQLNPLNPKTYQVFKNVISDVVKMF-----PEPFFHAGADEVTPGCWKTDPTIQ--SFLSNGG--SLSQVLE 374 (591)
Q Consensus 305 ~~~~-~~~~~L~~~~~~t~~fl~~ll~Ev~~lF-----~~~~iHIGgDEv~~~~w~~~p~~~--~~m~~~g--~~~~l~~ 374 (591)
.+.+ ...++|||++|+||+|+++||+||+++| |++||||||||+...||++||.|+ ++|++++ +..+++.
T Consensus 161 ~~~~~~~~~~L~p~~~~ty~fl~~vl~Ev~~lF~~~g~P~~yiHiGGDEv~~~~W~~~~~~~~~~~~~~~~~~~~~~l~~ 240 (445)
T cd06569 161 LSVQFYTDNVINPCMPSTYRFVDKVIDEIARMHQEAGQPLTTIHFGGDEVPEGAWGGSPACKAQLFAKEGSVKDVEDLKD 240 (445)
T ss_pred ccccccccccccCCchhHHHHHHHHHHHHHHHHhccCCCcceEEEeccccCCCcccCCHHHHHHHHHHhcCCCCHHHHHH
Confidence 1111 1347899999999999999999999999 679999999999999999999999 8998876 7899999
Q ss_pred HHHHHHHHHHHhcCCeEEEeccccccCcccccCcCCCCCCEEEEeeCCC----CchHHHHHHhCCcEEEccCCcccccCC
Q 007722 375 KFVNETFPYIVSLNRTVIYWEDVLLDGVVKVDSSILDPKYTILQTWNNG----PNNTKKIVDAGYRAIVSSADYYYLDCG 450 (591)
Q Consensus 375 ~f~~~~~~~l~~~gk~~~~W~d~~~~~~~~~~~~~lp~~~~iv~~W~~~----~~~~~~~~~~G~~vI~s~~~~~Yld~~ 450 (591)
+|++++.++|+++||++++|+|++...........++ ++++|++|+.+ ...+.+++++||+||+|+++++|||++
T Consensus 241 ~f~~~v~~~l~~~Gk~~i~W~e~~~~~~~~~~~~~~~-~~~~v~~W~~~~~~~~~~~~~~~~~G~~vI~s~~~~~YlD~~ 319 (445)
T cd06569 241 YFFERVSKILKAHGITLAGWEDGLLGKDTTNVDGFAT-PYVWNNVWGWGYWGGEDRAYKLANKGYDVVLSNATNLYFDFP 319 (445)
T ss_pred HHHHHHHHHHHHcCCeEEEecccccCCCcccccccCC-CCeEEEEccCCcccccHHHHHHHHCCCCEEEeCCCcEEEecC
Confidence 9999999999999999999999987543210012345 69999999864 245788999999999999999999998
Q ss_pred CCCCCCCCcccccccCCCCCCCCCCCCCCCCCccccccccCC-----------------------CCCChhhhcccceee
Q 007722 451 HGGFLGNDSQYDQLVGSDTVSNGGSWCAPFKTWQTIYNYDIT-----------------------YGLSEEKATLVLGGE 507 (591)
Q Consensus 451 ~~~~~~~~~~y~~~~~~~~~~~g~~w~~~~~~~~~~Y~~dp~-----------------------~~l~~~~~~~ilG~e 507 (591)
++.. ..+.|.+||+++.+|+++|+|+|. .+++++++++|+|+|
T Consensus 320 ~~~~--------------~~~~g~~w~~~~~~~~~~y~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilG~e 385 (445)
T cd06569 320 YEKH--------------PEERGYYWAGRFVDTKKVFSFMPDNLYANAEVTRDGDPIDDTALNGKVRLTLEGPKNILGLQ 385 (445)
T ss_pred CCCC--------------CCcCCcccccCCCCHHHhhccCCchhhccchhhcccCccccccccccccCChhHhcceeEEE
Confidence 6420 134578899888999999999984 235566788999999
Q ss_pred eeccccCCC-ccchhhhhhhHHHHHHHHhccCCCC
Q 007722 508 VALWSEQAD-PTVLDSRLWPRASAMAEALWSGNRD 541 (591)
Q Consensus 508 ~~lW~E~~~-~~~l~~~i~PR~~a~AE~~Ws~~~~ 541 (591)
+|||+|+++ .+.+++++|||++|+||++||+..+
T Consensus 386 ~~lWsE~v~~~~~l~~~~~PR~~A~AE~~Ws~~~~ 420 (445)
T cd06569 386 GQLWSETIRTDEQLEYMVFPRLLALAERAWHKAPW 420 (445)
T ss_pred EeeeccccCCHHHhHHHhhhHHHHHHHHHhcCCcc
Confidence 999999996 5689999999999999999999754
No 4
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=100.00 E-value=3.4e-85 Score=695.34 Aligned_cols=337 Identities=31% Similarity=0.606 Sum_probs=297.1
Q ss_pred CCcccceeCCCCCCCChHHHHHHHHHHHHCCCcEEEEEecCCCCCcccCCCCCCcccCCCCCC----------------C
Q 007722 181 FPHRGLLLDTSRNYYGVGDIMRTIYAMSANKMNVFHWHITDSPSFPLNLPSEPGLAAKGSYGD----------------D 244 (591)
Q Consensus 181 f~~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lhlHltDd~~frle~~~~P~Lt~~ga~~~----------------~ 244 (591)
|+|||+|||+||||+|+++||++||.||++|||+|||||+||||||||+++||+|+++|+|++ +
T Consensus 1 f~~RG~mLD~aR~f~~~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~ 80 (357)
T cd06563 1 FSWRGLMLDVSRHFFPVDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYG 80 (357)
T ss_pred CCccceeeeccccCcCHHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccC
Confidence 899999999999999999999999999999999999999999999999999999999999986 5
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEEEccCCCCchhhHHHhCchhhhhcccccCcCCCCCCcccccCCCCCcCCCCChhHHHH
Q 007722 245 MQYSPDDVKKIVEFGLDHGVRVIPEIDSPGHTGSWAEAYPEIVTCANMFWWPAESKGEDKLAAEPGTGQLNPLNPKTYQV 324 (591)
Q Consensus 245 ~~YT~~ei~eiv~yA~~rgI~VIPEID~PGH~~a~~~~~pel~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~t~~f 324 (591)
++||++|+++||+||++|||+||||||+|||+.+++++||+|..+.... ..........++|||++|+|++|
T Consensus 81 ~~YT~~di~eiv~yA~~rgI~VIPEID~PGH~~a~l~~~pel~~~~~~~--------~~~~~~~~~~~~L~~~~~~t~~f 152 (357)
T cd06563 81 GFYTQEEIREIVAYAAERGITVIPEIDMPGHALAALAAYPELGCTGGPG--------SVVSVQGVVSNVLCPGKPETYTF 152 (357)
T ss_pred ceECHHHHHHHHHHHHHcCCEEEEecCCchhHHHHHHhCccccCCCCCC--------ccccccCcCCCccCCCChhHHHH
Confidence 7999999999999999999999999999999999999999997542211 00011233567899999999999
Q ss_pred HHHHHHHHHHhCCCCceecCCCCCCCCCCCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHhcCCeEEEeccccccCc
Q 007722 325 FKNVISDVVKMFPEPFFHAGADEVTPGCWKTDPTIQSFLSNGG--SLSQVLEKFVNETFPYIVSLNRTVIYWEDVLLDGV 402 (591)
Q Consensus 325 l~~ll~Ev~~lF~~~~iHIGgDEv~~~~w~~~p~~~~~m~~~g--~~~~l~~~f~~~~~~~l~~~gk~~~~W~d~~~~~~ 402 (591)
+++|++|++++||++||||||||+...||+++|.|+++|+++| +..+++.+|++++.++|+++|+++++|+|++...
T Consensus 153 ~~~ll~E~~~lF~~~~iHiGgDE~~~~~w~~~~~~~~~~~~~g~~~~~~l~~~f~~~~~~~v~~~G~~~i~W~d~~~~~- 231 (357)
T cd06563 153 LEDVLDEVAELFPSPYIHIGGDEVPKGQWEKSPACQARMKEEGLKDEHELQSYFIKRVEKILASKGKKMIGWDEILEGG- 231 (357)
T ss_pred HHHHHHHHHHhCCCCeEEEeccccCCcccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCEEEEeecccccC-
Confidence 9999999999999999999999999999999999999999887 7789999999999999999999999999997632
Q ss_pred ccccCcCCCCCCEEEEeeCCCCchHHHHHHhCCcEEEccCCcccccCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCC
Q 007722 403 VKVDSSILDPKYTILQTWNNGPNNTKKIVDAGYRAIVSSADYYYLDCGHGGFLGNDSQYDQLVGSDTVSNGGSWCAPFKT 482 (591)
Q Consensus 403 ~~~~~~~lp~~~~iv~~W~~~~~~~~~~~~~G~~vI~s~~~~~Yld~~~~~~~~~~~~y~~~~~~~~~~~g~~w~~~~~~ 482 (591)
++ ++++|++|+++ ..+.+++++||+||+|+++++|||++++.+. ..+.+| .++.+
T Consensus 232 -------l~-~~~iv~~W~~~-~~~~~~~~~G~~vI~s~~~~~Yld~~~~~~~---------------~~~~~~-~~~~~ 286 (357)
T cd06563 232 -------LP-PNATVMSWRGE-DGGIKAAKQGYDVIMSPGQYLYLDYAQSKGP---------------DEPASW-AGFNT 286 (357)
T ss_pred -------CC-CCcEEEECCCc-hHHHHHHHCCCCEEEeCCCceEEecCCCCCC---------------CCCccc-cCCCC
Confidence 45 89999999975 5778899999999999999999999865311 112345 56889
Q ss_pred ccccccccCCCCC-ChhhhcccceeeeeccccCC-CccchhhhhhhHHHHHHHHhccCCCCcchhhhHHHHHHHH
Q 007722 483 WQTIYNYDITYGL-SEEKATLVLGGEVALWSEQA-DPTVLDSRLWPRASAMAEALWSGNRDETGKKRYAEATDRL 555 (591)
Q Consensus 483 ~~~~Y~~dp~~~l-~~~~~~~ilG~e~~lW~E~~-~~~~l~~~i~PR~~a~AE~~Ws~~~~~~~~~~~~~~~~Rl 555 (591)
|+++|+|+|..+. +++.+++|+|+|+|||+|++ ++..+++++|||++|+||++|+++. .++|++|..||
T Consensus 287 ~~~~y~~~P~~~~~~~~~~~~ilG~~~~lW~E~~~~~~~~~~~~~PR~~a~AE~~W~~~~----~~~~~~f~~rl 357 (357)
T cd06563 287 LEKVYSFEPVPGGLTPEQAKRILGVQANLWTEYIPTPERVEYMAFPRLLALAEVAWTPPE----KKDWEDFRKRL 357 (357)
T ss_pred HHHHhcCCCCCCCCChhHhcCEEEEEEEecccccCCHHHHHHHHHHHHHHHHHHHhCCcc----CCCHHHHHhhC
Confidence 9999999997643 34677899999999999999 4568999999999999999999975 34688888875
No 5
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=100.00 E-value=3.6e-83 Score=664.64 Aligned_cols=309 Identities=35% Similarity=0.681 Sum_probs=275.3
Q ss_pred CCcccceeCCCCCCCChHHHHHHHHHHHHCCCcEEEEEecCCCCCcccCCCCCCcccCCCCCCCCCCCHHHHHHHHHHHH
Q 007722 181 FPHRGLLLDTSRNYYGVGDIMRTIYAMSANKMNVFHWHITDSPSFPLNLPSEPGLAAKGSYGDDMQYSPDDVKKIVEFGL 260 (591)
Q Consensus 181 f~~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lhlHltDd~~frle~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~ 260 (591)
|+|||+|||+||||+|+++||++||.||++|||+||||||||||||+|+++||+|+++|+. +++||++|++|||+||+
T Consensus 1 f~~RG~mlD~aR~f~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~--~~~yT~~di~elv~yA~ 78 (311)
T cd06570 1 FPWRGLLIDVSRHFIPVAVIKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASD--GLYYTQEQIREVVAYAR 78 (311)
T ss_pred CCccCeEEecCCCCcCHHHHHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCC--CCccCHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999874 47999999999999999
Q ss_pred hcCCEEEEccCCCCchhhHHHhCchhhhhcccccCcCCCCCCcccccCCCCCcCCCCChhHHHHHHHHHHHHHHhCCCCc
Q 007722 261 DHGVRVIPEIDSPGHTGSWAEAYPEIVTCANMFWWPAESKGEDKLAAEPGTGQLNPLNPKTYQVFKNVISDVVKMFPEPF 340 (591)
Q Consensus 261 ~rgI~VIPEID~PGH~~a~~~~~pel~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~ll~Ev~~lF~~~~ 340 (591)
+|||+||||||+|||+.+|+++||+|..|..... ..+.|+ ....+|||++|+||+|+++|++|++++||++|
T Consensus 79 ~rgI~vIPEId~PGH~~a~~~~ypel~~~~~~~~--~~~~~~------~~~~~l~~~~p~t~~f~~~l~~E~~~lF~~~~ 150 (311)
T cd06570 79 DRGIRVVPEIDVPGHASAIAVAYPELASGPGPYV--IERGWG------VFEPLLDPTNEETYTFLDNLFGEMAELFPDEY 150 (311)
T ss_pred HcCCEEEEeecCccchHHHHHhCHHhccCCCccc--cccccc------cCCCccCCCChhHHHHHHHHHHHHHHhCCCCc
Confidence 9999999999999999999999999976643211 111222 12358999999999999999999999999999
Q ss_pred eecCCCCCCCCCCCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHhcCCeEEEeccccccCcccccCcCCCCCCEEEE
Q 007722 341 FHAGADEVTPGCWKTDPTIQSFLSNGG--SLSQVLEKFVNETFPYIVSLNRTVIYWEDVLLDGVVKVDSSILDPKYTILQ 418 (591)
Q Consensus 341 iHIGgDEv~~~~w~~~p~~~~~m~~~g--~~~~l~~~f~~~~~~~l~~~gk~~~~W~d~~~~~~~~~~~~~lp~~~~iv~ 418 (591)
|||||||+...||.+||.|+++|+++| +..+++.+|++++.++++++||++++|+|++.. .+| ++++|+
T Consensus 151 iHiGgDE~~~~~W~~~p~~~~~~~~~g~~~~~~l~~~f~~~~~~~v~~~Gk~~~~W~d~~~~--------~l~-~~~iv~ 221 (311)
T cd06570 151 FHIGGDEVDPKQWNENPRIQAFMKEHGLKDAAALQAYFNQRVEKILSKHGKKMIGWDEVLHP--------DLP-KNVVIQ 221 (311)
T ss_pred eEeeccCCCCCcccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCeEEEecccccc--------CCC-CCeEEE
Confidence 999999999999999999999999887 778999999999999999999999999998742 255 799999
Q ss_pred eeCCCCchHHHHHHhCCcEEEccCCcccccCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCccccccccCCCCCChh
Q 007722 419 TWNNGPNNTKKIVDAGYRAIVSSADYYYLDCGHGGFLGNDSQYDQLVGSDTVSNGGSWCAPFKTWQTIYNYDITYGLSEE 498 (591)
Q Consensus 419 ~W~~~~~~~~~~~~~G~~vI~s~~~~~Yld~~~~~~~~~~~~y~~~~~~~~~~~g~~w~~~~~~~~~~Y~~dp~~~l~~~ 498 (591)
.|.+ ...+.+++++||+||+|++ +|||++++ ++.+|+++|.
T Consensus 222 ~W~~-~~~~~~~~~~G~~vI~s~~--~YlD~~~~------------------------------~~~~y~~~p~------ 262 (311)
T cd06570 222 SWRG-HDSLGEAAKAGYQGILSTG--YYIDQPQP------------------------------AAYHYRVDPM------ 262 (311)
T ss_pred EeCC-chHHHHHHHCCCCEEEech--hheeCCCc------------------------------hhheeCCCCc------
Confidence 9985 4568889999999999986 89998531 3467888764
Q ss_pred hhcccceeeeeccccCCCccchhhhhhhHHHHHHHHhccCCCCcchhhhHHHHHHHH
Q 007722 499 KATLVLGGEVALWSEQADPTVLDSRLWPRASAMAEALWSGNRDETGKKRYAEATDRL 555 (591)
Q Consensus 499 ~~~~ilG~e~~lW~E~~~~~~l~~~i~PR~~a~AE~~Ws~~~~~~~~~~~~~~~~Rl 555 (591)
|+|||+|||+|++++..+++++|||++|+||++||++.. +++++|.+||
T Consensus 263 ----ilG~~~~lW~E~v~~~~~~~~~~PR~~A~AE~~Ws~~~~----~~~~~~~~Rl 311 (311)
T cd06570 263 ----ILGGEATMWAELVSEETIDSRLWPRTAAIAERLWSAQDV----RDEDDMYRRL 311 (311)
T ss_pred ----EEEEEEEEeecCcCHHHHHHHHhHHHHHHHHHhhCCCcC----CCHHHHHhhC
Confidence 999999999999998899999999999999999998753 4688888875
No 6
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=100.00 E-value=1.4e-81 Score=658.87 Aligned_cols=321 Identities=28% Similarity=0.467 Sum_probs=278.3
Q ss_pred CCcccceeCCCCCCCChHHHHHHHHHHHHCCCcEEEEEecCCCCCcccCCCCCCcccCCCCC-----CCCCCCHHHHHHH
Q 007722 181 FPHRGLLLDTSRNYYGVGDIMRTIYAMSANKMNVFHWHITDSPSFPLNLPSEPGLAAKGSYG-----DDMQYSPDDVKKI 255 (591)
Q Consensus 181 f~~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lhlHltDd~~frle~~~~P~Lt~~ga~~-----~~~~YT~~ei~ei 255 (591)
|+|||+|||+||||+|+++||++||.||++|||+|||||+||||||+|+++||+||..|+++ .+++||++|++||
T Consensus 1 f~~RG~mlD~aR~f~~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~el 80 (329)
T cd06568 1 FAYRGLMLDVARHFFTVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDI 80 (329)
T ss_pred CCccceeeeccCCCcCHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999874 4689999999999
Q ss_pred HHHHHhcCCEEEEccCCCCchhhHHHhCchhhhhcccccCcCCCCCCcccccCCCCCcCCCCChhHHHHHHHHHHHHHHh
Q 007722 256 VEFGLDHGVRVIPEIDSPGHTGSWAEAYPEIVTCANMFWWPAESKGEDKLAAEPGTGQLNPLNPKTYQVFKNVISDVVKM 335 (591)
Q Consensus 256 v~yA~~rgI~VIPEID~PGH~~a~~~~~pel~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~ll~Ev~~l 335 (591)
|+||++|||+||||||+|||+.+++++||+|..+ +.. .. ...+..+..++|||++|+|++|+++|++|++++
T Consensus 81 v~yA~~rgI~vIPEiD~PGH~~a~~~~~p~l~~~-~~~-----~~--~~~~~~~~~~~l~~~~~~t~~fl~~v~~E~~~~ 152 (329)
T cd06568 81 VAYAAERHITVVPEIDMPGHTNAALAAYPELNCD-GKA-----KP--LYTGIEVGFSSLDVDKPTTYEFVDDVFRELAAL 152 (329)
T ss_pred HHHHHHcCCEEEEecCCcHHHHHHHHhChhhccC-CCC-----Cc--cccccCCCCcccCCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999532 211 00 111233456789999999999999999999999
Q ss_pred CCCCceecCCCCCCCCCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCeEEEeccccccCcccccCcCCCCCCE
Q 007722 336 FPEPFFHAGADEVTPGCWKTDPTIQSFLSNGGSLSQVLEKFVNETFPYIVSLNRTVIYWEDVLLDGVVKVDSSILDPKYT 415 (591)
Q Consensus 336 F~~~~iHIGgDEv~~~~w~~~p~~~~~m~~~g~~~~l~~~f~~~~~~~l~~~gk~~~~W~d~~~~~~~~~~~~~lp~~~~ 415 (591)
||++||||||||+... ..+++.+|++++.++++++||++++|+|++.. .++ +++
T Consensus 153 f~~~~iHiGgDE~~~~-----------------~~~~~~~f~~~~~~~v~~~Gk~~~~W~d~~~~--------~l~-~~~ 206 (329)
T cd06568 153 TPGPYIHIGGDEAHST-----------------PHDDYAYFVNRVRAIVAKYGKTPVGWQEIARA--------DLP-AGT 206 (329)
T ss_pred CCCCeEEEecccCCCC-----------------chHHHHHHHHHHHHHHHHCCCeEEEECccccc--------CCC-CCe
Confidence 9999999999999753 23678899999999999999999999998642 245 899
Q ss_pred EEEeeCCCC--chHHHHHHhCCcEEEccCCcccccCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCccccccccCCC
Q 007722 416 ILQTWNNGP--NNTKKIVDAGYRAIVSSADYYYLDCGHGGFLGNDSQYDQLVGSDTVSNGGSWCAPFKTWQTIYNYDITY 493 (591)
Q Consensus 416 iv~~W~~~~--~~~~~~~~~G~~vI~s~~~~~Yld~~~~~~~~~~~~y~~~~~~~~~~~g~~w~~~~~~~~~~Y~~dp~~ 493 (591)
+|++|+++. ..+.+++++||++|+|+++++|||++++. . ...|.+||+ +.+|+++|+|+|..
T Consensus 207 iv~~W~~~~~~~~~~~~~~~G~~vI~s~~~~~YlD~~~~~----------~-----~~~~~~~~~-~~~~~~~y~~~P~~ 270 (329)
T cd06568 207 VAQYWSDRAPDADAAAALDKGAKVILSPADKAYLDMKYDA----------D-----SPLGLTWAG-PVEVREAYDWDPAA 270 (329)
T ss_pred EEEECCCCCCchHHHHHHHCCCCEEEeCCCcEEEecCCCC----------C-----CCCCcccCC-CCCHHHHeeeCCCC
Confidence 999999863 57889999999999999999999997542 0 124667886 57999999999976
Q ss_pred CCChhhhcccceeeeeccccCCCc-cchhhhhhhHHHHHHHHhccCCCCcchhhhHHHHHHHH
Q 007722 494 GLSEEKATLVLGGEVALWSEQADP-TVLDSRLWPRASAMAEALWSGNRDETGKKRYAEATDRL 555 (591)
Q Consensus 494 ~l~~~~~~~ilG~e~~lW~E~~~~-~~l~~~i~PR~~a~AE~~Ws~~~~~~~~~~~~~~~~Rl 555 (591)
....+.+++|+|+|+|||+|+++. +.+++++|||++|+|||+|+++.. ++|++|.+||
T Consensus 271 ~~~~~~~~~ilG~~~~lW~E~~~~~~~~~~~~~PR~~a~AE~~Ws~~~~----~~~~~f~~rl 329 (329)
T cd06568 271 YGPGVPDEAILGVEAPLWTETIRNLDDLEYMAFPRLAGVAEIGWSPQEA----RDWDDYKVRL 329 (329)
T ss_pred CCCcchhhCEEEEEEeecccccCCHHHHHHHHHhHHHHHHHHHhCCCcC----CCHHHHHhhC
Confidence 555456789999999999999975 589999999999999999999753 4688888875
No 7
>COG3525 Chb N-acetyl-beta-hexosaminidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7e-77 Score=638.60 Aligned_cols=414 Identities=28% Similarity=0.455 Sum_probs=353.9
Q ss_pred CCcceEEEeeCCCCcEEEEecChhhhhHHHHHHHHHhc-----CCCcccccceEEecCCCCCcccceeCCCCCCCChHHH
Q 007722 126 VNESYTLHVPNDRPTANLTAETPWGAMRGLETFSQLVW-----GRPSRVPVGVYVWDDPIFPHRGLLLDTSRNYYGVGDI 200 (591)
Q Consensus 126 ~~E~Y~L~i~~~~~~i~I~a~~~~G~~~g~~Tl~Ql~~-----~~~~~~p~~~~I~D~P~f~~RG~mlD~aR~f~~~~~l 200 (591)
..|.|+|.++ +..|+|++.+.+|+|||.+||.||+. ++.+.+| .++|.|+|||.|||+|+|+||||+|++++
T Consensus 204 ~~e~y~la~~--d~ai~v~a~~~aG~~y~~~tl~qL~t~a~s~qg~~~~p-~~~I~DaPRf~~rGllvDvaRqf~s~~~v 280 (732)
T COG3525 204 GEEAYRLAIN--DKAIKVTAHDLAGLFYADGTLLQLDTSADSFQGDIRFP-AVTIVDAPRFAWRGLLVDVARQFHSTDDV 280 (732)
T ss_pred cchhheeecc--cceeEEeeccccchhhhHHHHHhhhccccccCCCeeee-eeecccCcccchhhhhHhhhhhcCCHHHH
Confidence 5799999999 57799999999999999999999986 2456789 68899999999999999999999999999
Q ss_pred HHHHHHHHHCCCcEEEEEecCCCCCcccCCCCCCcccCCCCCCC----------------CCCCHHHHHHHHHHHHhcCC
Q 007722 201 MRTIYAMSANKMNVFHWHITDSPSFPLNLPSEPGLAAKGSYGDD----------------MQYSPDDVKKIVEFGLDHGV 264 (591)
Q Consensus 201 k~~Id~ma~~KlN~lhlHltDd~~frle~~~~P~Lt~~ga~~~~----------------~~YT~~ei~eiv~yA~~rgI 264 (591)
|++||.|+.+|||+|||||+||||||+||+++|+||.+|+|+.. +|||++++++|++||++|+|
T Consensus 281 k~~Id~laa~Kln~~hlHLtddegwrleIk~~PkLT~iga~R~~de~~~Pq~g~~pe~~ggfytqd~~relv~yAsar~I 360 (732)
T COG3525 281 KRLIDQLAAHKLNVLHLHLTDDEGWRLEIKRYPKLTTIGAWRIPDEPDLPQLGYGPERMGGFYTQDDIRELVAYASARQI 360 (732)
T ss_pred HHHHHHHHHhhcceEEEeeccCcceeeccccCCccccccccccCCCcCCcccccCcccccCcccHHHHHHHHHHHhhcCc
Confidence 99999999999999999999999999999999999999998643 89999999999999999999
Q ss_pred EEEEccCCCCchhhHHHhCchhhhhcccccCcCCCCCCcccccCCCCCcCCCCChhHHHHHHHHHHHHHHhCCCCceecC
Q 007722 265 RVIPEIDSPGHTGSWAEAYPEIVTCANMFWWPAESKGEDKLAAEPGTGQLNPLNPKTYQVFKNVISDVVKMFPEPFFHAG 344 (591)
Q Consensus 265 ~VIPEID~PGH~~a~~~~~pel~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~ll~Ev~~lF~~~~iHIG 344 (591)
+||||||+|||+.+.+.++|++...... |+. ...........|||+.+-+++|+++|++||.++||+.+||||
T Consensus 361 tviPeiD~PgHa~aav~A~p~~~l~~a~---~ds----~~sv~~~~n~~ln~tl~~t~~fldkv~dEv~~lfPs~~iHiG 433 (732)
T COG3525 361 TVIPEIDMPGHARAAVVAYPDLNLGRAD---PDS----YDSVQAYLNPVLNPTLDPTYQFLDKVLDEVADLFPSTTIHIG 433 (732)
T ss_pred eecCCcCCcchhhhhhhhCccccccccC---CCc----chhhhhcccccccccccHHHHHHHHHHHHHHHhCCcceEEec
Confidence 9999999999999999999965321110 111 011111223479999999999999999999999999999999
Q ss_pred CCCCCCCCCCC-CHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHhcCCeEEEeccccccCcccccCcCCCCCCEEEEeeC
Q 007722 345 ADEVTPGCWKT-DPTIQSFLSNGG--SLSQVLEKFVNETFPYIVSLNRTVIYWEDVLLDGVVKVDSSILDPKYTILQTWN 421 (591)
Q Consensus 345 gDEv~~~~w~~-~p~~~~~m~~~g--~~~~l~~~f~~~~~~~l~~~gk~~~~W~d~~~~~~~~~~~~~lp~~~~iv~~W~ 421 (591)
|||+....|+. +|.|++.|++.| +..+++.+|++++.+++.++|++.++|+|.+.+.... ...+- +++.+++|.
T Consensus 434 gDE~~~~qwk~~sp~~q~l~~~~G~~d~~~lq~~fi~q~~k~l~~~Gr~~igW~e~~~~~~~~--~~~~t-~~~~vm~W~ 510 (732)
T COG3525 434 GDEFIDGQWKASSPLVQALMEKLGNKDTFELQSYFITQVGKTLASKGRRLIGWDEGAHGGDVN--GTALT-ANVTVMSWY 510 (732)
T ss_pred cchhccCeeeccCHHHHHHHHHhccCCcchhhHHHHHHHHHHHHhcCceEEeecchhccCCCc--ccccc-CceEEEEEe
Confidence 99999999999 999999999877 6689999999999999999999999999999865422 12222 799999999
Q ss_pred CCCchHHHHHHhCCcEEEccCCcccccCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCccc-cccccCCC--CCChh
Q 007722 422 NGPNNTKKIVDAGYRAIVSSADYYYLDCGHGGFLGNDSQYDQLVGSDTVSNGGSWCAPFKTWQT-IYNYDITY--GLSEE 498 (591)
Q Consensus 422 ~~~~~~~~~~~~G~~vI~s~~~~~Yld~~~~~~~~~~~~y~~~~~~~~~~~g~~w~~~~~~~~~-~Y~~dp~~--~l~~~ 498 (591)
+ .+....++++||+||++++.++|||+.+.. . ..+.|.+|+... +.++ .|.++|.. .+.++
T Consensus 511 ~-~~~ai~~akqg~dvv~tp~~~~ylD~~q~~---------~-----peepg~~~a~t~-~l~r~~y~~~~~g~~~~~de 574 (732)
T COG3525 511 G-KDKAIELAKQGYDVVLTPAQFVYLDMLQIA---------A-----PEEPGYSWATTT-PLERNKYAYDFAGKQPINDE 574 (732)
T ss_pred c-chhhHHHHhhcccccccchhhhhhhhhccc---------c-----cccCCCcccccc-ccchhhhhhcccCcccCChH
Confidence 6 567788999999999999999999997531 1 245678887643 3445 78877752 34477
Q ss_pred hhcccceeeeeccccCCCc-cchhhhhhhHHHHHHHHhccCCCCcchhhhHHHHHHHHHHHHHHHHHCCCCCCCC
Q 007722 499 KATLVLGGEVALWSEQADP-TVLDSRLWPRASAMAEALWSGNRDETGKKRYAEATDRLNEWRHRMVSRGIGAEPI 572 (591)
Q Consensus 499 ~~~~ilG~e~~lW~E~~~~-~~l~~~i~PR~~a~AE~~Ws~~~~~~~~~~~~~~~~Rl~~~~~rl~~~gi~~~p~ 572 (591)
..++++|.|+|+|+|+... ..+++++|||++|+|||+|++.. .+++..+..|+..+..+++..+|.+.+.
T Consensus 575 ~~k~~~G~q~~lWse~~~~~~~f~~~vfprl~a~aEraw~p~a----~~Dw~~~~~r~~~~~~l~~~~~~~~~~~ 645 (732)
T COG3525 575 LAKRILGVQAALWSEHIQTRGRFEYMVFPRLAAAAERAWTPMA----FNDWLYYLDRLSAQLPLLVLISIPYNAW 645 (732)
T ss_pred HhhhhhhhHHHHHHHHhhhhhHHHHHhcchHHHHHHhhCCchh----hcchhhhhhhcchhcchhhhhccccccc
Confidence 8899999999999999864 57999999999999999999864 4568888999999999999888877553
No 8
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=100.00 E-value=2.2e-77 Score=634.74 Aligned_cols=335 Identities=38% Similarity=0.768 Sum_probs=281.4
Q ss_pred CCcccceeCCCCCCCChHHHHHHHHHHHHCCCcEEEEEecCCCCCcccCCCCCCcccCCCCCCCC---CCCHHHHHHHHH
Q 007722 181 FPHRGLLLDTSRNYYGVGDIMRTIYAMSANKMNVFHWHITDSPSFPLNLPSEPGLAAKGSYGDDM---QYSPDDVKKIVE 257 (591)
Q Consensus 181 f~~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lhlHltDd~~frle~~~~P~Lt~~ga~~~~~---~YT~~ei~eiv~ 257 (591)
|+|||+|||+||||+|+++||++||.||.+|||+|||||+|+||||+|++++|+|+..|++++.. +||++||++||+
T Consensus 1 f~~RG~~lD~aR~~~~~~~ik~~id~ma~~k~N~lhlhl~D~~~~~~~~~~~p~l~~~ga~~~~~~~~~yT~~di~~lv~ 80 (351)
T PF00728_consen 1 FPWRGLMLDVARHFFSVDTIKRLIDQMAYYKLNVLHLHLSDDQGFRLESKSYPELTEKGAYRPSDAGGYYTKEDIRELVA 80 (351)
T ss_dssp SSEEEEEEETSSS-B-HHHHHHHHHHHHHTT-SEEEEEEESSTCB-BEBSTSTHHHHTTTESTTCTESEBEHHHHHHHHH
T ss_pred CCccceeeccCCCCCCHHHHHHHHHHHHHcCCcEEEEEEecCCCCccccCCCccccccCccccccccccCCHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999998855 999999999999
Q ss_pred HHHhcCCEEEEccCCCCchhhHHHhCchhhhhcccccCcCCCCCCcccccCCCCCcCCCCChhHHHHHHHHHHHHHHhCC
Q 007722 258 FGLDHGVRVIPEIDSPGHTGSWAEAYPEIVTCANMFWWPAESKGEDKLAAEPGTGQLNPLNPKTYQVFKNVISDVVKMFP 337 (591)
Q Consensus 258 yA~~rgI~VIPEID~PGH~~a~~~~~pel~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~ll~Ev~~lF~ 337 (591)
||++|||+||||||+|||+.+++++||++..+. ++....+....+..+.+.+|||++|+|++|+++|++|++++|+
T Consensus 81 yA~~~gI~VIPeid~PGH~~~~l~~~p~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~t~~~~~~l~~e~~~~f~ 156 (351)
T PF00728_consen 81 YAKERGIEVIPEIDTPGHAEAWLKAYPELGCSA----WPEDKSWPNSTCWYPDNGVLDPSNPETYEFLKDLLDEVADLFP 156 (351)
T ss_dssp HHHHTT-EEEEEEEESSS-HHHHHHHHHHCCCH----TTCSSSCEEEETTSEEEEEE-TTSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCceeeeccCchHHHHHHHhCchhhccc----cccccccccccccCCCcccCCCCcHHHHHHHHHHHHHHHhhCC
Confidence 999999999999999999999999999996541 0111112212222334568999999999999999999999999
Q ss_pred CCceecCCCCCCCCCCCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHhcCCeEEEeccccccCcccccCcCCCCCCE
Q 007722 338 EPFFHAGADEVTPGCWKTDPTIQSFLSNGG--SLSQVLEKFVNETFPYIVSLNRTVIYWEDVLLDGVVKVDSSILDPKYT 415 (591)
Q Consensus 338 ~~~iHIGgDEv~~~~w~~~p~~~~~m~~~g--~~~~l~~~f~~~~~~~l~~~gk~~~~W~d~~~~~~~~~~~~~lp~~~~ 415 (591)
+++|||||||++..||+++|.|+++|+++| +..+++.+|+++++++++++|+++++|+|++...+. ...++ +++
T Consensus 157 ~~~iHiGgDEv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~~~v~~~g~~~~~W~D~~~~~~~---~~~~~-~~~ 232 (351)
T PF00728_consen 157 SKYIHIGGDEVNYNCWNNSPECQAWMKQNGLTDPNDLFQYFVNRLADIVKKHGKKPIIWNDMLDDFPD---ASLLP-KDV 232 (351)
T ss_dssp SSEEEEE-TSTTTHHHHCHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHTTSEEEEESTTTTTTCC---GHCSC-TTE
T ss_pred CCeEEeCCcccccccccCCHHHhhHHhhcCCchHHHHHHHHHHHHHHHHHhcCCcEEEEccccccCCc---ccccc-CCc
Confidence 999999999999999999999999999887 789999999999999999999999999999986642 13456 899
Q ss_pred EEEeeCCCC--chHHHHHHhCCcEEEccCCcccccCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCccccccccCCC
Q 007722 416 ILQTWNNGP--NNTKKIVDAGYRAIVSSADYYYLDCGHGGFLGNDSQYDQLVGSDTVSNGGSWCAPFKTWQTIYNYDITY 493 (591)
Q Consensus 416 iv~~W~~~~--~~~~~~~~~G~~vI~s~~~~~Yld~~~~~~~~~~~~y~~~~~~~~~~~g~~w~~~~~~~~~~Y~~dp~~ 493 (591)
+++.|+++. ..+..++++||++|+++.+++|+|++++.|.. ..+..|+. +.+|+++|+|+|..
T Consensus 233 ~i~~W~~~~~~~~~~~~~~~g~~vI~s~~~~~Yld~~~~~~~~--------------~~~~~~~~-~~~~~~~~~~~~~~ 297 (351)
T PF00728_consen 233 IIQVWNYDWGPASAQEFAKKGYKVINSPSDYLYLDPGQSPWPE--------------EDGNYWAP-FNTWSDFYNWDPAY 297 (351)
T ss_dssp EEEEESSTTHHHHHHHHHHTTHEEEESTHGTGBTTTTSSTTTS--------------SSSBHTTS-THHHHHHHHHHHCH
T ss_pred eEEEeeccccchhhhHHHHhcCcEEEcCCCceEEccCcCCCCc--------------cCcccccc-cccccccccccccc
Confidence 999999854 45788999999999999999999998764321 23445653 67889999998753
Q ss_pred C------CChhhh-cccceeeeeccccCC-CccchhhhhhhHHHHHHHHhccC
Q 007722 494 G------LSEEKA-TLVLGGEVALWSEQA-DPTVLDSRLWPRASAMAEALWSG 538 (591)
Q Consensus 494 ~------l~~~~~-~~ilG~e~~lW~E~~-~~~~l~~~i~PR~~a~AE~~Ws~ 538 (591)
. +.+.+. ++|+|+++|||+|.+ +++.+++++|||++|+||++|++
T Consensus 298 ~~~~~~~~~~~~~~~~i~G~~~~~W~E~~~~~~~l~~~~~Pr~~A~AE~~Ws~ 350 (351)
T PF00728_consen 298 FNTNSTQIDPAQKSERILGGEAALWSENIRDEEDLDYRLWPRLAALAERLWSP 350 (351)
T ss_dssp CTTTCSTTTTHHHCCCEEEEEEEEETTTTTSHHHHHHHHTTHHHHHHHHHHSS
T ss_pred cccccchhhhhcccCCCceeEEEeecCCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 2 223333 599999999999999 67789999999999999999996
No 9
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=100.00 E-value=4.6e-74 Score=597.48 Aligned_cols=294 Identities=30% Similarity=0.549 Sum_probs=257.0
Q ss_pred cccceeCCCCCCCChHHHHHHHHHHHHCCCcEEEEEecCCCCCcccCCCCCCcccCC----CCCCCCCCCHHHHHHHHHH
Q 007722 183 HRGLLLDTSRNYYGVGDIMRTIYAMSANKMNVFHWHITDSPSFPLNLPSEPGLAAKG----SYGDDMQYSPDDVKKIVEF 258 (591)
Q Consensus 183 ~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lhlHltDd~~frle~~~~P~Lt~~g----a~~~~~~YT~~ei~eiv~y 258 (591)
|||+|||+||||+|+++||++||.||.+|||+|||||+||||||+|+++||+|+++| +++.+++||++||+||++|
T Consensus 1 ~RG~mlD~aR~~~~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~di~elv~y 80 (303)
T cd02742 1 IRGIMLDVSRHFLSVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTYAQLKDIIEY 80 (303)
T ss_pred CcceeeeccccCcCHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECHHHHHHHHHH
Confidence 799999999999999999999999999999999999999999999999999999998 4567789999999999999
Q ss_pred HHhcCCEEEEccCCCCchhhHHHhCchhhhhcccccCcCCCCCCcccccCCCCCcCCCCChhHHHHHHHHHHHHHHhCCC
Q 007722 259 GLDHGVRVIPEIDSPGHTGSWAEAYPEIVTCANMFWWPAESKGEDKLAAEPGTGQLNPLNPKTYQVFKNVISDVVKMFPE 338 (591)
Q Consensus 259 A~~rgI~VIPEID~PGH~~a~~~~~pel~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~ll~Ev~~lF~~ 338 (591)
|++|||+||||||+|||+.+++++||++..+.. .+..+ ....++|||++|+|++|+++|++|++++||+
T Consensus 81 A~~rgI~viPEiD~PGH~~a~~~~~p~l~~~~~-----~~~~~------~~~~~~l~~~~~~t~~fl~~l~~e~~~lf~~ 149 (303)
T cd02742 81 AAARGIEVIPEIDMPGHSTAFVKSFPKLLTECY-----AGLKL------RDVFDPLDPTLPKGYDFLDDLFGEIAELFPD 149 (303)
T ss_pred HHHcCCEEEEeccchHHHHHHHHhCHHhccCcc-----ccCCC------CCCCCccCCCCccHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999864211 11111 1234689999999999999999999999999
Q ss_pred CceecCCCCCCCCCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCeEEEeccccccCcccccCcCCCCCCEEEE
Q 007722 339 PFFHAGADEVTPGCWKTDPTIQSFLSNGGSLSQVLEKFVNETFPYIVSLNRTVIYWEDVLLDGVVKVDSSILDPKYTILQ 418 (591)
Q Consensus 339 ~~iHIGgDEv~~~~w~~~p~~~~~m~~~g~~~~l~~~f~~~~~~~l~~~gk~~~~W~d~~~~~~~~~~~~~lp~~~~iv~ 418 (591)
++|||||||+... .+..+++.+|+++++++++++|+++++|+|++.... .++ ++++|+
T Consensus 150 ~~iHiGgDE~~~~---------------~~~~~l~~~f~~~~~~~v~~~g~~~~~W~d~~~~~~------~l~-~~~ii~ 207 (303)
T cd02742 150 RYLHIGGDEAHFK---------------QDRKHLMSQFIQRVLDIVKKKGKKVIVWQDGFDKKM------KLK-EDVIVQ 207 (303)
T ss_pred CeEEecceecCCC---------------CCHHHHHHHHHHHHHHHHHHcCCeEEEecccccCCC------CCC-CCeEEE
Confidence 9999999999754 145689999999999999999999999999987432 355 899999
Q ss_pred eeCCCC----chHHHHHHhCCcEEEccCCcccccCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCccccccccCCCC
Q 007722 419 TWNNGP----NNTKKIVDAGYRAIVSSADYYYLDCGHGGFLGNDSQYDQLVGSDTVSNGGSWCAPFKTWQTIYNYDITYG 494 (591)
Q Consensus 419 ~W~~~~----~~~~~~~~~G~~vI~s~~~~~Yld~~~~~~~~~~~~y~~~~~~~~~~~g~~w~~~~~~~~~~Y~~dp~~~ 494 (591)
+|+++. ..+.+++++||+||+|++.|+|+... .+.+|+++|+++|...
T Consensus 208 ~W~~~~~~~~~~~~~~~~~G~~vi~s~~~yly~~~~----------------------------~~~~~~~~y~~~p~~~ 259 (303)
T cd02742 208 YWDYDGDKYNVELPEAAAKGFPVILSNGYYLDIFID----------------------------GALDARKVYKNDPLAV 259 (303)
T ss_pred EccCCCCcchHHHHHHHHCCCCEEEeCCceeeeeCC----------------------------CCCCHHHHhCCCCCCC
Confidence 999864 56788999999999999977776100 1346889999998765
Q ss_pred CChhhhcccceeeeeccccCCCcc-chhhhhhhHHHHHHHHhcc
Q 007722 495 LSEEKATLVLGGEVALWSEQADPT-VLDSRLWPRASAMAEALWS 537 (591)
Q Consensus 495 l~~~~~~~ilG~e~~lW~E~~~~~-~l~~~i~PR~~a~AE~~Ws 537 (591)
.+++.+++|+|+++|||+|++++. .+++++|||++|+||++||
T Consensus 260 ~~~~~~~~vlG~~~~lW~E~~~~~~~~~~~~~pr~~a~AE~~Ws 303 (303)
T cd02742 260 PTPQQKDLVLGVIACLWGETVKDTKTLQYRFWPRALAVAERSWS 303 (303)
T ss_pred CCcccccceEEEEEeeeccccCCHHHHHHHHHHHHHHHHHHhhC
Confidence 555667899999999999999865 8999999999999999997
No 10
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=100.00 E-value=1.5e-71 Score=584.37 Aligned_cols=299 Identities=27% Similarity=0.506 Sum_probs=255.5
Q ss_pred CcccceeCCCCCCCChHHHHHHHHHHHHCCCcEEEEEecCCCCCcccCCCCCCcccCCCC---------------CCCCC
Q 007722 182 PHRGLLLDTSRNYYGVGDIMRTIYAMSANKMNVFHWHITDSPSFPLNLPSEPGLAAKGSY---------------GDDMQ 246 (591)
Q Consensus 182 ~~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lhlHltDd~~frle~~~~P~Lt~~ga~---------------~~~~~ 246 (591)
++||+|||+||||+|+++||++||.||++|||+|||||+| +||++++.+|+++..|++ +.+++
T Consensus 1 ~~RG~mLD~aR~~~~~~~ik~~id~ma~~K~N~lhlHltD--~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (326)
T cd06564 1 EVRGFMLDVGRKYYSMDFLKDIIKTMSWYKMNDLQLHLND--NLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGY 78 (326)
T ss_pred CcceeEEEccCCCCCHHHHHHHHHHHHHcCCceEEEeecC--CcccccCCCchhhhhhhhhccccccccccCCCCCCCCc
Confidence 5899999999999999999999999999999999999999 799999999999976544 45789
Q ss_pred CCHHHHHHHHHHHHhcCCEEEEccCCCCchhhHHHhCchhhhhcccccCcCCCCCCcccccCCCCCcCCCCChhHHHHHH
Q 007722 247 YSPDDVKKIVEFGLDHGVRVIPEIDSPGHTGSWAEAYPEIVTCANMFWWPAESKGEDKLAAEPGTGQLNPLNPKTYQVFK 326 (591)
Q Consensus 247 YT~~ei~eiv~yA~~rgI~VIPEID~PGH~~a~~~~~pel~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~ 326 (591)
||++|+||||+||++|||+||||||+|||+.+|+++||++..+.. ......++|||++|+|++|++
T Consensus 79 YT~~di~eiv~yA~~rgI~vIPEID~PGH~~a~~~~~pel~~~~~--------------~~~~~~~~l~~~~~~t~~f~~ 144 (326)
T cd06564 79 YTKEEFKELIAYAKDRGVNIIPEIDSPGHSLAFTKAMPELGLKNP--------------FSKYDKDTLDISNPEAVKFVK 144 (326)
T ss_pred ccHHHHHHHHHHHHHcCCeEeccCCCcHHHHHHHHhhHHhcCCCc--------------ccCCCcccccCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999965421 012345789999999999999
Q ss_pred HHHHHHHHhCC--CCceecCCCCCCCCCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCeEEEeccccccCccc
Q 007722 327 NVISDVVKMFP--EPFFHAGADEVTPGCWKTDPTIQSFLSNGGSLSQVLEKFVNETFPYIVSLNRTVIYWEDVLLDGVVK 404 (591)
Q Consensus 327 ~ll~Ev~~lF~--~~~iHIGgDEv~~~~w~~~p~~~~~m~~~g~~~~l~~~f~~~~~~~l~~~gk~~~~W~d~~~~~~~~ 404 (591)
+|++|++++|+ ++||||||||+... .+..+++.+|+++++++|+++||++++|+|++...+.
T Consensus 145 ~l~~E~~~~f~~~~~~~HiGgDE~~~~---------------~~~~~~~~~f~~~~~~~v~~~gk~~~~W~d~~~~~~~- 208 (326)
T cd06564 145 ALFDEYLDGFNPKSDTVHIGADEYAGD---------------AGYAEAFRAYVNDLAKYVKDKGKTPRVWGDGIYYKGD- 208 (326)
T ss_pred HHHHHHHHhcCCCCCEEEecccccccc---------------CccHHHHHHHHHHHHHHHHHcCCeEEEeCCcccCCCC-
Confidence 99999999999 99999999999864 2456789999999999999999999999999875431
Q ss_pred ccCcCCCCCCEEEEeeCCCCchHHHHHHhCCcEEEccCCcccccCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCcc
Q 007722 405 VDSSILDPKYTILQTWNNGPNNTKKIVDAGYRAIVSSADYYYLDCGHGGFLGNDSQYDQLVGSDTVSNGGSWCAPFKTWQ 484 (591)
Q Consensus 405 ~~~~~lp~~~~iv~~W~~~~~~~~~~~~~G~~vI~s~~~~~Yld~~~~~~~~~~~~y~~~~~~~~~~~g~~w~~~~~~~~ 484 (591)
...++ ++++|++|++++..+.+++++||+||+|++.++|+|++++.| . .+.+|+
T Consensus 209 --~~~l~-~~~iv~~W~~~~~~~~~~~~~G~~vI~s~~~~~Y~~~~~~~~----------------------~-~~~~~~ 262 (326)
T cd06564 209 --TTVLS-KDVIINYWSYGWADPKELLNKGYKIINTNDGYLYIVPGAGYY----------------------G-DYLNTE 262 (326)
T ss_pred --cccCC-CCeEEEeCCCcccCHHHHHHCCCcEEEeCCCcEEEeCCCccC----------------------C-CccCHH
Confidence 13466 899999999866678899999999999999999999865321 0 123467
Q ss_pred ccccccCCCC------CChhhhcccceeeeeccccCCC----ccchhhhhhhHHHHHHHHhccC
Q 007722 485 TIYNYDITYG------LSEEKATLVLGGEVALWSEQAD----PTVLDSRLWPRASAMAEALWSG 538 (591)
Q Consensus 485 ~~Y~~dp~~~------l~~~~~~~ilG~e~~lW~E~~~----~~~l~~~i~PR~~a~AE~~Ws~ 538 (591)
++|++.+... ..++..++|+|+++|||+|.++ +..+++++|||++|+||++|++
T Consensus 263 ~~y~~~~~~~~~~~~~~~~~~~~~ilG~~~~lW~E~~~~~~t~~~~~~~~~pr~~a~Ae~~W~~ 326 (326)
T cd06564 263 DIYNNWTPNKFGGTNATLPEGDPQILGGMFAIWNDDSDAGISEVDIYDRIFPALPAFAEKTWGG 326 (326)
T ss_pred HHHhcCCccccCCCCccCCCCCCCcchhheeeecCCCCcCcCHHHHHHHHHHHHHHHHHHhcCC
Confidence 7776544311 3345678999999999999995 3689999999999999999985
No 11
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=100.00 E-value=2.3e-51 Score=426.30 Aligned_cols=297 Identities=20% Similarity=0.308 Sum_probs=222.9
Q ss_pred cccceeCCCC-CCCChHHHHHHHHHHHHCCCcEEEEEecCCCCCcccCCCCCCcccCCCCCCCCCCCHHHHHHHHHHHHh
Q 007722 183 HRGLLLDTSR-NYYGVGDIMRTIYAMSANKMNVFHWHITDSPSFPLNLPSEPGLAAKGSYGDDMQYSPDDVKKIVEFGLD 261 (591)
Q Consensus 183 ~RG~mlD~aR-~f~~~~~lk~~Id~ma~~KlN~lhlHltDd~~frle~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~ 261 (591)
+||+|||+|| +|+++++||++||.||.+|+|+||||++|+ |++ +++|++.. .+++||++|++||++||++
T Consensus 1 ~RG~mlD~~R~~~~~~~~lk~~id~ma~~k~N~l~lhl~D~--f~~--~~~p~~~~-----~~~~yT~~ei~ei~~yA~~ 71 (301)
T cd06565 1 FRGVHLDLKRNAVPKVSYLKKLLRLLALLGANGLLLYYEDT--FPY--EGEPEVGR-----MRGAYTKEEIREIDDYAAE 71 (301)
T ss_pred CceEEEecCCCCCCCHHHHHHHHHHHHHcCCCEEEEEEecc--eec--CCCccccc-----CCCCcCHHHHHHHHHHHHH
Confidence 5999999999 999999999999999999999999999995 544 68888753 2467999999999999999
Q ss_pred cCCEEEEccCCCCchhhHHHhCchhhhhcccccCcCCCCCCcccccCCCCCcCCCCChhHHHHHHHHHHHHHHhCCCCce
Q 007722 262 HGVRVIPEIDSPGHTGSWAEAYPEIVTCANMFWWPAESKGEDKLAAEPGTGQLNPLNPKTYQVFKNVISDVVKMFPEPFF 341 (591)
Q Consensus 262 rgI~VIPEID~PGH~~a~~~~~pel~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~ll~Ev~~lF~~~~i 341 (591)
|||+||||||+|||+.++++ +|++....+ ...+.++|||++|+|++|+++|++|++++||+++|
T Consensus 72 ~gI~vIPeid~pGH~~~~l~-~~~~~~l~~---------------~~~~~~~l~~~~~~t~~fi~~li~ev~~~f~s~~~ 135 (301)
T cd06565 72 LGIEVIPLIQTLGHLEFILK-HPEFRHLRE---------------VDDPPQTLCPGEPKTYDFIEEMIRQVLELHPSKYI 135 (301)
T ss_pred cCCEEEecCCCHHHHHHHHh-Ccccccccc---------------cCCCCCccCCCChhHHHHHHHHHHHHHHhCCCCeE
Confidence 99999999999999999987 455532110 11235789999999999999999999999999999
Q ss_pred ecCCCCCCCCCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCeEEEecccccc---CcccccCcCCCCCCEEEE
Q 007722 342 HAGADEVTPGCWKTDPTIQSFLSNGGSLSQVLEKFVNETFPYIVSLNRTVIYWEDVLLD---GVVKVDSSILDPKYTILQ 418 (591)
Q Consensus 342 HIGgDEv~~~~w~~~p~~~~~m~~~g~~~~l~~~f~~~~~~~l~~~gk~~~~W~d~~~~---~~~~~~~~~lp~~~~iv~ 418 (591)
||||||++..+ .++.+++. ...+..+++..|+++++++++++|+++++|+|++.. .+.. ...|| ++++++
T Consensus 136 HIG~DE~~~~g--~~~~~~~~--~~~~~~~l~~~~~~~v~~~v~~~g~~~~~W~D~~~~~~~~~~~--~~~l~-~~v~~~ 208 (301)
T cd06565 136 HIGMDEAYDLG--RGRSLRKH--GNLGRGELYLEHLKKVLKIIKKRGPKPMMWDDMLRKLSIEPEA--LSGLP-KLVTPV 208 (301)
T ss_pred EECCCcccccC--CCHHHHHh--cCCCHHHHHHHHHHHHHHHHHHcCCEEEEEhHHhcCCCCChHH--HhCCC-CCeEEE
Confidence 99999998754 34555543 233788999999999999999999999999999976 2221 13677 899999
Q ss_pred eeCCCCchHHHHHHhCCcEEEccCCcccccCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCccccccccCCCCCChh
Q 007722 419 TWNNGPNNTKKIVDAGYRAIVSSADYYYLDCGHGGFLGNDSQYDQLVGSDTVSNGGSWCAPFKTWQTIYNYDITYGLSEE 498 (591)
Q Consensus 419 ~W~~~~~~~~~~~~~G~~vI~s~~~~~Yld~~~~~~~~~~~~y~~~~~~~~~~~g~~w~~~~~~~~~~Y~~dp~~~l~~~ 498 (591)
+|+++...... +.+.+.+...+..+|+..|...|.+-.+.++ ...+.+-++ +...
T Consensus 209 ~W~y~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~w~~~~~~~~------------------~~~~n~~~~-----~~~~ 263 (301)
T cd06565 209 VWDYYADLDEH--DRPIGLWKKYGSVFAVAWGASAWKGATPPND------------------KHLENIKSW-----LKAA 263 (301)
T ss_pred EecCcCCcchh--hHhHHHHHHhCCCceEeeeechhccCCCCHH------------------HHHHHHHHH-----HHHH
Confidence 99986543211 2233333333333444444433322111110 001111111 2233
Q ss_pred hhcccceeeeeccccCCCccchhhhhhhHHHHHHHHhcc
Q 007722 499 KATLVLGGEVALWSEQADPTVLDSRLWPRASAMAEALWS 537 (591)
Q Consensus 499 ~~~~ilG~e~~lW~E~~~~~~l~~~i~PR~~a~AE~~Ws 537 (591)
.+..+.|...+.|+|......+ ..++|.+++.||..|+
T Consensus 264 ~~~~~~G~~~T~W~d~g~~~~~-~~~~p~~~~~~~~~~~ 301 (301)
T cd06565 264 KKNGVQGILLTGWGDYGHEAVL-CELLPGLIPSLALALG 301 (301)
T ss_pred HHCCCCEEEEEecCCCCCcccH-HHHHHHHHHHHHHhcC
Confidence 5678999999999998765555 5699999999999884
No 12
>PF02838 Glyco_hydro_20b: Glycosyl hydrolase family 20, domain 2; InterPro: IPR015882 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside []. This entry represents the alpha and beta subunit of beta-N-acetylhexosaminidase. It contains a similar fold but lacks the catalytic centre.; GO: 0004563 beta-N-acetylhexosaminidase activity, 0005975 carbohydrate metabolic process; PDB: 3SUT_A 3SUS_A 3GH7_A 3SUR_A 3SUW_A 3SUV_A 3SUU_A 3GH5_A 3GH4_A 2J4G_B ....
Probab=99.70 E-value=1.2e-16 Score=144.72 Aligned_cols=122 Identities=22% Similarity=0.296 Sum_probs=88.2
Q ss_pred CCcccCCcEEEEeCCeeeEEcCCCeEEEeCCCChHHHHHHHHHHHHHHhhcCCCCccCCCCCCCCCCCCCCCCCCccEEE
Q 007722 34 IDVWPKPRLLRWAPLHQLSLLSPSFTIASPYDHPHLSSAVSRYLTLIKTEHHLPSSVNNPLTATSSPPPPPSPPLQSLHI 113 (591)
Q Consensus 34 ~~l~P~P~~~~~~~~~~~~~l~~~~~i~~~~~~~~l~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i 113 (591)
+.|||.|++++..+| .|.|+..++|+++. +.+..++.++++.+.+.+|..+. . .. ......|.+
T Consensus 2 ~~iiP~P~~~~~~~g--~~~l~~~~~i~~~~--~~~~~~~~~l~~~l~~~~g~~~~-~-----~~------~~~~~~i~~ 65 (124)
T PF02838_consen 2 PSIIPQPQSITLTGG--TFTLPQSTKIVVDD--PELKAAAERLQDILKRLTGISLS-S-----SG------SPNKIDIRL 65 (124)
T ss_dssp ---SS--SEEEEEEE--EEEETTTEEEEETT--CSHHHHHHHHHHHHHHHHTECCC-E-----CS------ETTSEEEEE
T ss_pred CcEEccccEEEECCC--EEEECCCcEEEECC--cccHHHHHHHHHHHHHHhCCccc-c-----cC------CCCCceEEE
Confidence 689999999999887 89999999999863 46788889999999877787662 1 11 111233443
Q ss_pred EEccCCCCCCCCCCcceEEEeeCCCCcEEEEecChhhhhHHHHHHHHHhcCCC-cccccceEEecC
Q 007722 114 FIHRLHAPLHHGVNESYTLHVPNDRPTANLTAETPWGAMRGLETFSQLVWGRP-SRVPVGVYVWDD 178 (591)
Q Consensus 114 ~~~~~~~~l~~~~~E~Y~L~i~~~~~~i~I~a~~~~G~~~g~~Tl~Ql~~~~~-~~~p~~~~I~D~ 178 (591)
...+ + ....+|||+|+|+ .++|+|+|.+..|+|||+|||+||+.+.. ..+| +++|+|+
T Consensus 66 ~~~~-~---~~~~~E~Y~L~i~--~~~I~I~a~~~~G~~yg~qTL~Qll~~~~~~~lp-~~~I~D~ 124 (124)
T PF02838_consen 66 LLDD-D---AGLGEEGYRLSIS--PKGITIEASDPAGLFYGLQTLRQLLRQSGNGTLP-CVEIEDY 124 (124)
T ss_dssp ECTT-C---CTSTTT-EEEEEE--SSEEEEEESSHHHHHHHHHHHHHHSBTCS-CEEE-EEEEEE-
T ss_pred eecC-C---CCCCCcceEEEEE--CCEEEEEEcCchHHHHHHHHHHHHhhccCCCccc-eEEEEeC
Confidence 3322 2 2236999999999 57899999999999999999999998532 4799 8899996
No 13
>PF14845 Glycohydro_20b2: beta-acetyl hexosaminidase like; PDB: 1O7A_B 2GJX_C 2GK1_D 1NOW_B 1NOU_B 3LMY_B 1NP0_A 3S6T_A 3OZO_A 3NSN_A ....
Probab=99.53 E-value=6e-14 Score=128.08 Aligned_cols=119 Identities=37% Similarity=0.587 Sum_probs=75.8
Q ss_pred cccCCcEEEEeCCeeeEEcCC-CeEEEeCCC-----ChHHHHHHHHHHHHHHhhcCCCCccCCCCCCCCCCCCCCCCCCc
Q 007722 36 VWPKPRLLRWAPLHQLSLLSP-SFTIASPYD-----HPHLSSAVSRYLTLIKTEHHLPSSVNNPLTATSSPPPPPSPPLQ 109 (591)
Q Consensus 36 l~P~P~~~~~~~~~~~~~l~~-~~~i~~~~~-----~~~l~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (591)
|||+|+.+++++. .+.|.+ ++.+...+. .+.|..|++||.+.|+.....+..... ..... ........
T Consensus 1 lWP~P~~~~~g~~--~~~l~~~~~~~~~~~~~~~~~~~~l~~A~~r~~~~i~~~~~~~~~~~~--~~~~~--~~~~~~l~ 74 (128)
T PF14845_consen 1 LWPKPQSISLGST--VFSLDPSNFKFNFSGSSSNSCSDILQEAIDRYLKLIFKQNPSPCASHS--RGSSF--KPKSGYLS 74 (128)
T ss_dssp -SS--SEEEEECE--EEEEECCCEEEEEETTTSTTTHHHHHHHHHHHHHHHHT--TS-TT------S-------BE-ECE
T ss_pred CCCCCcEEEECCc--eEEEchhhEEEEeCCCCcccHHHHHHHHHHHHHHHHhhhcccccccCC--ccccc--ccCCCcce
Confidence 7999999999776 888888 788875422 278999999999999986554442000 00000 00012345
Q ss_pred cEEEEEccCCCC--CCCCCCcceEEEe-eCCCCcEEEEecChhhhhHHHHHHHHH
Q 007722 110 SLHIFIHRLHAP--LHHGVNESYTLHV-PNDRPTANLTAETPWGAMRGLETFSQL 161 (591)
Q Consensus 110 ~i~i~~~~~~~~--l~~~~~E~Y~L~i-~~~~~~i~I~a~~~~G~~~g~~Tl~Ql 161 (591)
.|.|.+.+.+.. +..+.||+|+|.| +.+ +.|+|+|++.+|++|||+||.||
T Consensus 75 ~l~I~v~~~~~~~~l~~~~DESY~L~v~s~~-~~~~I~A~tv~GalrgLETlsQL 128 (128)
T PF14845_consen 75 SLEITVTSDDEDSELQLGMDESYSLSVPSTN-GQATITANTVWGALRGLETLSQL 128 (128)
T ss_dssp EEEEEESSSSTTSS--TT----EEEEETSSS-EEEEEEESSHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCccccCCCCCCCEEEEEecCC-ceEEEEECChhhhhHHHHHHhhC
Confidence 678888765443 7778899999999 532 27999999999999999999997
No 14
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=97.33 E-value=0.011 Score=62.12 Aligned_cols=195 Identities=16% Similarity=0.184 Sum_probs=116.2
Q ss_pred CcccceeCCCC--CCCChHHHHHHHHHHHHCCCcEEEEEecCCCCCc-ccCCCCCCcccC-CCCCCCCCCCHHHHHHHHH
Q 007722 182 PHRGLLLDTSR--NYYGVGDIMRTIYAMSANKMNVFHWHITDSPSFP-LNLPSEPGLAAK-GSYGDDMQYSPDDVKKIVE 257 (591)
Q Consensus 182 ~~RG~mlD~aR--~f~~~~~lk~~Id~ma~~KlN~lhlHltDd~~fr-le~~~~P~Lt~~-ga~~~~~~YT~~ei~eiv~ 257 (591)
+.||+=|++.. .+...+.+.++|+.|...+||++-++.-- .|-. +.++-.|..... |.-+ ..-..+=++.+|+
T Consensus 1 E~RgvWi~~~~~~~~~~~~~~~~~l~~l~~~~~N~V~~qVr~-~gda~Y~S~~~p~s~~~~g~~~--~~pg~DpL~~~I~ 77 (311)
T PF02638_consen 1 EFRGVWISTVANIDWPSKEQIDEMLDDLKSAGFNAVFVQVRP-RGDALYPSDIEPWSGYLTGKQG--KDPGFDPLEFMIE 77 (311)
T ss_pred CeEEEEEeecCCCCCCCHHHHHHHHHHHHHcCCCEEEEEEEe-CcEEEecccccccccccCCCCC--CCCCccHHHHHHH
Confidence 46888888865 34467899999999999999998888753 2332 233334422111 1111 1113467999999
Q ss_pred HHHhcCCEEEEcc--CCCCchh-hHHHhCchhhhhcccccCcCCCCCCcccc-cCCCCCcCCCCChhHHHHHHHHHHHHH
Q 007722 258 FGLDHGVRVIPEI--DSPGHTG-SWAEAYPEIVTCANMFWWPAESKGEDKLA-AEPGTGQLNPLNPKTYQVFKNVISDVV 333 (591)
Q Consensus 258 yA~~rgI~VIPEI--D~PGH~~-a~~~~~pel~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~~~~~~t~~fl~~ll~Ev~ 333 (591)
-|.+|||+|.+=+ -+.++.. .+.+.+|+-..... .+|..... ......-|||.+|++.+|+.+++.|++
T Consensus 78 eaHkrGlevHAW~~~~~~~~~~~~~~~~~p~~~~~~~-------~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv 150 (311)
T PF02638_consen 78 EAHKRGLEVHAWFRVGFNAPDVSHILKKHPEWFAVNH-------PGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIV 150 (311)
T ss_pred HHHHcCCEEEEEEEeecCCCchhhhhhcCchhheecC-------CCceeecccCCCCceEECCCCHHHHHHHHHHHHHHH
Confidence 9999999999876 2233322 24455665422111 12221110 001123599999999999999999999
Q ss_pred HhCCCCceecCCCCCCC--CCCCC-CHHHHHHHHcCC-----CH---------HHHHHHHHHHHHHHHHhcC
Q 007722 334 KMFPEPFFHAGADEVTP--GCWKT-DPTIQSFLSNGG-----SL---------SQVLEKFVNETFPYIVSLN 388 (591)
Q Consensus 334 ~lF~~~~iHIGgDEv~~--~~w~~-~p~~~~~m~~~g-----~~---------~~l~~~f~~~~~~~l~~~g 388 (591)
+-.+-.=||+ |.++. ..++. .+..+.|.+..| +. .+-...|++++.+.+++..
T Consensus 151 ~~YdvDGIhl--Ddy~yp~~~~g~~~~~~~~y~~~~g~~~~~~~~d~~W~~WRr~~I~~~V~~i~~~ik~~k 220 (311)
T PF02638_consen 151 KNYDVDGIHL--DDYFYPPPSFGYDFPDVAAYEKYTGKDPFSSPEDDAWTQWRRDNINNFVKRIYDAIKAIK 220 (311)
T ss_pred hcCCCCeEEe--cccccccccCCCCCccHHHHHHhcCcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9877555553 33322 12222 234555665442 11 2334567777777777744
No 15
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=97.06 E-value=0.016 Score=60.91 Aligned_cols=172 Identities=17% Similarity=0.191 Sum_probs=114.7
Q ss_pred hHHHHHHHHHHHHCCCcEEEEEecCCCCCcccCCCCCCcccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEEccCCCCch
Q 007722 197 VGDIMRTIYAMSANKMNVFHWHITDSPSFPLNLPSEPGLAAKGSYGDDMQYSPDDVKKIVEFGLDHGVRVIPEIDSPGHT 276 (591)
Q Consensus 197 ~~~lk~~Id~ma~~KlN~lhlHltDd~~frle~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPEID~PGH~ 276 (591)
.+.+.++|+.+...++|.+-+-+.||.|.-.--...|...+.|+.. .+ ..|+++|++.++++||.+|--|=++-=.
T Consensus 12 ~~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~~---~~-i~D~~~l~~~l~e~gIY~IARIv~FkD~ 87 (316)
T PF13200_consen 12 PERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAVK---PY-IKDLKALVKKLKEHGIYPIARIVVFKDP 87 (316)
T ss_pred HHHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhccccc---cc-ccCHHHHHHHHHHCCCEEEEEEEEecCh
Confidence 4678999999999999999999999998732212345555566642 12 4799999999999999999777555321
Q ss_pred hhHHHhCchhhhhcccccCcCCCCCCcccccCCCCCcCCCCChhHHHHHHHHHHHHHHhCCCCceecCCCCCCCCCCCCC
Q 007722 277 GSWAEAYPEIVTCANMFWWPAESKGEDKLAAEPGTGQLNPLNPKTYQVFKNVISDVVKMFPEPFFHAGADEVTPGCWKTD 356 (591)
Q Consensus 277 ~a~~~~~pel~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~ll~Ev~~lF~~~~iHIGgDEv~~~~w~~~ 356 (591)
.....+|++.... .+++.|.++ ....=+||.++++.+.+-+|-.|++++ |-||+..+ +-..
T Consensus 88 -~la~~~pe~av~~-----~~G~~w~d~----~~~~WvnP~~~evw~Y~i~IA~Eaa~~--------GFdEIqfD-YIRF 148 (316)
T PF13200_consen 88 -VLAEAHPEWAVKT-----KDGSVWRDN----EGEAWVNPYSKEVWDYNIDIAKEAAKL--------GFDEIQFD-YIRF 148 (316)
T ss_pred -HHhhhChhhEEEC-----CCCCcccCC----CCCccCCCCCHHHHHHHHHHHHHHHHc--------CCCEEEee-eeec
Confidence 1234588875421 344556542 123458999999999999999999874 44554321 1111
Q ss_pred HH---HHHHHHcCC----CHHHHHHHHHHHHHHHHHhcCCeE
Q 007722 357 PT---IQSFLSNGG----SLSQVLEKFVNETFPYIVSLNRTV 391 (591)
Q Consensus 357 p~---~~~~m~~~g----~~~~l~~~f~~~~~~~l~~~gk~~ 391 (591)
|. .+...-..+ +..+....|++.+.+.|+..|..+
T Consensus 149 P~~~~~~~l~y~~~~~~~~r~~aI~~Fl~~a~~~l~~~~v~v 190 (316)
T PF13200_consen 149 PDEGRLSGLDYSENDTEESRVDAITDFLAYAREELHPYGVPV 190 (316)
T ss_pred CCCCcccccccCCCCCcchHHHHHHHHHHHHHHHHhHcCCCE
Confidence 11 000000001 245788999999999999988654
No 16
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.80 E-value=0.055 Score=58.70 Aligned_cols=148 Identities=14% Similarity=0.121 Sum_probs=94.4
Q ss_pred CCcccceeC--CCCCCCChHHHHHHHHHHHHCCCcEEEEEecCCCCCc-ccCCCCCCccc-CCCCCCCCCCCHHHHHHHH
Q 007722 181 FPHRGLLLD--TSRNYYGVGDIMRTIYAMSANKMNVFHWHITDSPSFP-LNLPSEPGLAA-KGSYGDDMQYSPDDVKKIV 256 (591)
Q Consensus 181 f~~RG~mlD--~aR~f~~~~~lk~~Id~ma~~KlN~lhlHltDd~~fr-le~~~~P~Lt~-~ga~~~~~~YT~~ei~eiv 256 (591)
=+.||+=|| .++..+.-..+++.+|.+..+.+|++-.-...+ |.- +.++..|.... .|..+...-| +=+.++|
T Consensus 45 ~eiRGvWltn~~~~v~~~~~el~~~ld~l~~ln~NTv~~qV~~~-G~~lypS~~~p~s~~~~~~~~~~~g~--DpLa~~I 121 (418)
T COG1649 45 QEIRGVWLTNADSRVLFQRQELKDILDDLQKLNFNTVYPQVWND-GDALYPSAVLPWSDGLPGVLGVDPGY--DPLAFVI 121 (418)
T ss_pred ccceeEEEecCCCcccccHHHHHHHHHHHHHcCCceeEEEEecC-ccccccccccccccCcCcccCCCCCC--ChHHHHH
Confidence 578999998 467778899999999999999999998877533 222 22222332211 1111122233 6799999
Q ss_pred HHHHhcCCEEEEccCCCCchh---hHHHhCchhhhhcccccCcCCCCCCcccccCC-CCCcCCCCChhHHHHHHHHHHHH
Q 007722 257 EFGLDHGVRVIPEIDSPGHTG---SWAEAYPEIVTCANMFWWPAESKGEDKLAAEP-GTGQLNPLNPKTYQVFKNVISDV 332 (591)
Q Consensus 257 ~yA~~rgI~VIPEID~PGH~~---a~~~~~pel~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~~~~~~t~~fl~~ll~Ev 332 (591)
+-|++|||+|+|=++.-.-+- ...+.+|+-.... ..+|........ ...-|||..|++-+|+.+++-|+
T Consensus 122 ~~AHkr~l~v~aWf~~~~~a~~~s~~~~~~p~~~~~~-------~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~ev 194 (418)
T COG1649 122 AEAHKRGLEVHAWFNPYRMAPPTSPLTKRHPHWLTTK-------RPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEV 194 (418)
T ss_pred HHHHhcCCeeeechhhcccCCCCChhHhhCCCCcccC-------CCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHH
Confidence 999999999999876443221 1223344432111 112222111100 13469999999999999999999
Q ss_pred HHhCCC
Q 007722 333 VKMFPE 338 (591)
Q Consensus 333 ~~lF~~ 338 (591)
..-.+.
T Consensus 195 V~~Ydv 200 (418)
T COG1649 195 VRNYDV 200 (418)
T ss_pred HhCCCC
Confidence 986653
No 17
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=96.73 E-value=0.0097 Score=62.32 Aligned_cols=145 Identities=18% Similarity=0.302 Sum_probs=83.8
Q ss_pred ccceeCCCCCCCChHHHHHHHHHHHHCCCcEEEEEecCCCCCcccCCCCCCcccCCCCCCCCCCCH---HHHHHHHHHHH
Q 007722 184 RGLLLDTSRNYYGVGDIMRTIYAMSANKMNVFHWHITDSPSFPLNLPSEPGLAAKGSYGDDMQYSP---DDVKKIVEFGL 260 (591)
Q Consensus 184 RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lhlHltDd~~frle~~~~P~Lt~~ga~~~~~~YT~---~ei~eiv~yA~ 260 (591)
||+.----...++.+.-+.+|+.|+.+|||++-.-..||.=-| ..|+ +.|+. +++++|++.|+
T Consensus 1 RGvIEGFYG~PWs~e~R~~l~~f~~~~kmN~YiYAPKdDpyhr------------~~Wr--e~Yp~~el~~l~~L~~~a~ 66 (306)
T PF07555_consen 1 RGVIEGFYGRPWSHEDRLDLIRFLGRYKMNTYIYAPKDDPYHR------------SKWR--EPYPEEELAELKELADAAK 66 (306)
T ss_dssp EEEEE-SSSS---HHHHHHHHHHHHHTT--EEEE--TT-TTTT------------TTTT--S---HHHHHHHHHHHHHHH
T ss_pred CCceeCcCCCCCCHHHHHHHHHHHHHcCCceEEECCCCChHHH------------hhhc--ccCCHHHHHHHHHHHHHHH
Confidence 6666666667888999999999999999999998888873211 1222 34444 56889999999
Q ss_pred hcCCEEEEccCCCCchhhHHHhCchhhhhcccccCcCCCCCCcccccCCCCCcCCCCChhHHHHHHHHHHHHHHhCCCCc
Q 007722 261 DHGVRVIPEIDSPGHTGSWAEAYPEIVTCANMFWWPAESKGEDKLAAEPGTGQLNPLNPKTYQVFKNVISDVVKMFPEPF 340 (591)
Q Consensus 261 ~rgI~VIPEID~PGH~~a~~~~~pel~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~ll~Ev~~lF~~~~ 340 (591)
+.||++|=-| .||.. ++.+.++.++-|.+=++++.++ .-+.
T Consensus 67 ~~~V~Fv~ai-sPg~~-------------------------------------~~~s~~~d~~~L~~K~~ql~~l-Gvr~ 107 (306)
T PF07555_consen 67 ANGVDFVYAI-SPGLD-------------------------------------ICYSSEEDFEALKAKFDQLYDL-GVRS 107 (306)
T ss_dssp HTT-EEEEEE-BGTTT---------------------------------------TSHHHHHHHHHHHHHHHHCT-T--E
T ss_pred HcCCEEEEEE-Ccccc-------------------------------------cccCcHHHHHHHHHHHHHHHhc-CCCE
Confidence 9999999554 22211 2233567777777777777765 3355
Q ss_pred eecCCCCCCCCCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhc
Q 007722 341 FHAGADEVTPGCWKTDPTIQSFLSNGGSLSQVLEKFVNETFPYIVSL 387 (591)
Q Consensus 341 iHIGgDEv~~~~w~~~p~~~~~m~~~g~~~~l~~~f~~~~~~~l~~~ 387 (591)
|-|=.|.+...-|..+.+ .-....+.+..++|++.+.+.+.
T Consensus 108 FailfDDi~~~~~~~~~~------~~~~~~~~q~~l~n~v~~~l~~~ 148 (306)
T PF07555_consen 108 FAILFDDIDGDLWHCDKD------DFNSLAQAQARLLNRVNKELIKK 148 (306)
T ss_dssp EEEE-TS-SSC--TTTTT------T-SCHHHHHHHHHHHHHHHTTTC
T ss_pred EEEeecCCCCcccccccc------ccchHHHHHHHHHHHHHHHHhcc
Confidence 666666665432221100 11256788899999998888763
No 18
>PF03648 Glyco_hydro_67N: Glycosyl hydrolase family 67 N-terminus; InterPro: IPR005154 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This represents a family of alpha-glucuronidases (GH67 from CAZY). Deletion mutants have indicated that the central region is responsible for the catalytic activity. Within this central domain, the invariant Glu and Asp (residues 391 and 364 respectively from Bacillus stearothermophilus (Geobacillus stearothermophilus)) are thought to from the the catalytic centre [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process; PDB: 1GQL_A 1GQI_B 1GQJ_B 1GQK_A 1H41_A 1MQR_A 1K9F_A 1K9E_A 1L8N_A 1K9D_A ....
Probab=96.60 E-value=0.01 Score=53.63 Aligned_cols=90 Identities=14% Similarity=0.117 Sum_probs=56.7
Q ss_pred eEEEeCCCChHHHHHHHHHHHHHHhhcCCCCccCCCCCCCCCCCCCCCCCCccEEEEEccCCCC---------CCCCCCc
Q 007722 58 FTIASPYDHPHLSSAVSRYLTLIKTEHHLPSSVNNPLTATSSPPPPPSPPLQSLHIFIHRLHAP---------LHHGVNE 128 (591)
Q Consensus 58 ~~i~~~~~~~~l~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~---------l~~~~~E 128 (591)
..|++..+++.+..|++.|++.|...+|..+.++. . ......|.|..-+.... ....++|
T Consensus 22 ~~I~~~~~~~~~~~A~~EL~~~l~~i~G~~~~~~~------~-----~~~~~~iviGt~~~~~~~~~~~~~~~~~~l~~E 90 (122)
T PF03648_consen 22 SNIVVLGNSPVVQTAAEELQRGLKGILGKEPPVSS------E-----PPESSAIVIGTLDDSPLIDELILDDELAQLGEE 90 (122)
T ss_dssp SEEEE---SHHHHHHHHHHHHHHHHHHTS--EEES------S-----S-TTSEEEEEEGGG-SSHHHT--HHHHTTTSTT
T ss_pred CEEEEcCCChHHHHHHHHHHHHHHHHhCCCCcccc------C-----CCCCceEEEEECccchhhhhhccchhhhccCCc
Confidence 45666656688999999999999999998764321 1 11123366655332211 1123689
Q ss_pred ceEEEee--CCCCcEEEEecChhhhhHHHHHH
Q 007722 129 SYTLHVP--NDRPTANLTAETPWGAMRGLETF 158 (591)
Q Consensus 129 ~Y~L~i~--~~~~~i~I~a~~~~G~~~g~~Tl 158 (591)
||.|+.- .+++.+.|.|++..|++||+=.|
T Consensus 91 Gy~I~~v~~~~~~~lvI~g~~~~G~LYGvF~l 122 (122)
T PF03648_consen 91 GYIIRTVEIGGKNVLVIAGKTERGVLYGVFHL 122 (122)
T ss_dssp -EEEEEEESSSSEEEEEEESSHHHHHHHHHHH
T ss_pred cEEEEEEecCCCCEEEEEeCCCcEEEEEEeeC
Confidence 9999992 12578999999999999998554
No 19
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=95.63 E-value=0.13 Score=47.24 Aligned_cols=122 Identities=14% Similarity=0.090 Sum_probs=80.7
Q ss_pred HHHHHHHHHCCCcEEEEEecCCCCCcccCCCCCCcccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEEccCCCCchhhHH
Q 007722 201 MRTIYAMSANKMNVFHWHITDSPSFPLNLPSEPGLAAKGSYGDDMQYSPDDVKKIVEFGLDHGVRVIPEIDSPGHTGSWA 280 (591)
Q Consensus 201 k~~Id~ma~~KlN~lhlHltDd~~frle~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPEID~PGH~~a~~ 280 (591)
+++++.|...+.|.+.+...+-.||-+ ||-- .|. ....++++=++|+|+-|+++||+|+--+|.--+. .+.
T Consensus 3 ~~~~~~lk~~~v~si~i~a~~h~g~ay----YPt~--~~~--~hp~L~~Dllge~v~a~h~~Girv~ay~~~~~d~-~~~ 73 (132)
T PF14871_consen 3 EQFVDTLKEAHVNSITIFAKCHGGYAY----YPTK--VGP--RHPGLKRDLLGEQVEACHERGIRVPAYFDFSWDE-DAA 73 (132)
T ss_pred HHHHHHHHHhCCCEEEEEcccccEEEE----ccCC--CCc--CCCCCCcCHHHHHHHHHHHCCCEEEEEEeeecCh-HHH
Confidence 678999999999999998877667643 4421 121 1344565667999999999999999999887444 345
Q ss_pred HhCchhhhhcccccCcCCCCCCcccccCCCCCcCCCCChhHHHHHHHHHHHHHHhCC
Q 007722 281 EAYPEIVTCANMFWWPAESKGEDKLAAEPGTGQLNPLNPKTYQVFKNVISDVVKMFP 337 (591)
Q Consensus 281 ~~~pel~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~ll~Ev~~lF~ 337 (591)
+.|||-..-. ++++.........+....+|+.. .-.+++...++|+++.++
T Consensus 74 ~~HPeW~~~~-----~~G~~~~~~~~~~~~~~~~c~ns-~Y~e~~~~~i~Ei~~~y~ 124 (132)
T PF14871_consen 74 ERHPEWFVRD-----ADGRPMRGERFGYPGWYTCCLNS-PYREFLLEQIREILDRYD 124 (132)
T ss_pred HhCCceeeEC-----CCCCCcCCCCcCCCCceecCCCc-cHHHHHHHHHHHHHHcCC
Confidence 6799974321 12211000000112234566655 566999999999999776
No 20
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=94.99 E-value=0.1 Score=53.70 Aligned_cols=117 Identities=9% Similarity=0.055 Sum_probs=66.4
Q ss_pred CCCChHHHHHHHHHHHHCCCcEEEEEecCCCCCcccCCCCCCcccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEEccCC
Q 007722 193 NYYGVGDIMRTIYAMSANKMNVFHWHITDSPSFPLNLPSEPGLAAKGSYGDDMQYSPDDVKKIVEFGLDHGVRVIPEIDS 272 (591)
Q Consensus 193 ~f~~~~~lk~~Id~ma~~KlN~lhlHltDd~~frle~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPEID~ 272 (591)
+-...+..|++||..|.+++-.+.+ |.||.-. ... ..+..-..+...+|+|||+||+++||.|+-=
T Consensus 27 ~g~~t~~~k~yIDfAa~~G~eYvlv----D~GW~~~--~~~-----~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw--- 92 (273)
T PF10566_consen 27 HGATTETQKRYIDFAAEMGIEYVLV----DAGWYGW--EKD-----DDFDFTKPIPDFDLPELVDYAKEKGVGIWLW--- 92 (273)
T ss_dssp BSSSHHHHHHHHHHHHHTT-SEEEE----BTTCCGS----T-----TT--TT-B-TT--HHHHHHHHHHTT-EEEEE---
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEe----ccccccc--ccc-----ccccccccCCccCHHHHHHHHHHcCCCEEEE---
Confidence 4467899999999999999998887 7899530 000 0111113456799999999999999888743
Q ss_pred CCchhh------HHHhCchhhhhcccccCcCCCCCCcccccCCCCCcCCCCChhHHHHHHHHHHHHHHh
Q 007722 273 PGHTGS------WAEAYPEIVTCANMFWWPAESKGEDKLAAEPGTGQLNPLNPKTYQVFKNVISDVVKM 335 (591)
Q Consensus 273 PGH~~a------~~~~~pel~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~ll~Ev~~l 335 (591)
.|... .-+...+..... .+|+..- .+ -+-++-.+.++.++..+|+++.++.
T Consensus 93 -~~~~~~~~~~~~~~~~~~~f~~~--------~~~Gv~G-vK--idF~~~d~Q~~v~~y~~i~~~AA~~ 149 (273)
T PF10566_consen 93 -YHSETGGNVANLEKQLDEAFKLY--------AKWGVKG-VK--IDFMDRDDQEMVNWYEDILEDAAEY 149 (273)
T ss_dssp -EECCHTTBHHHHHCCHHHHHHHH--------HHCTEEE-EE--EE--SSTSHHHHHHHHHHHHHHHHT
T ss_pred -EeCCcchhhHhHHHHHHHHHHHH--------HHcCCCE-Ee--eCcCCCCCHHHHHHHHHHHHHHHHc
Confidence 34433 111100110000 1222210 00 1235557889999999999999874
No 21
>smart00642 Aamy Alpha-amylase domain.
Probab=93.70 E-value=0.31 Score=46.57 Aligned_cols=75 Identities=13% Similarity=0.255 Sum_probs=52.9
Q ss_pred ChHHHHHHHHHHHHCCCcEEEEEecCC------CCCcccCCCCCCcccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEEc
Q 007722 196 GVGDIMRTIYAMSANKMNVFHWHITDS------PSFPLNLPSEPGLAAKGSYGDDMQYSPDDVKKIVEFGLDHGVRVIPE 269 (591)
Q Consensus 196 ~~~~lk~~Id~ma~~KlN~lhlHltDd------~~frle~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPE 269 (591)
....|.+-++.++..++|.+++-.--. ..+.+....|-.+.+ .++ |.+|++++|+-|+++||+||-.
T Consensus 17 ~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~--~~G-----t~~d~~~lv~~~h~~Gi~vilD 89 (166)
T smart00642 17 DLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDP--RFG-----TMEDFKELVDAAHARGIKVILD 89 (166)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCc--ccC-----CHHHHHHHHHHHHHCCCEEEEE
Confidence 467778888899999999999865311 112333333322221 111 8899999999999999999999
Q ss_pred cCCCCchhh
Q 007722 270 IDSPGHTGS 278 (591)
Q Consensus 270 ID~PGH~~a 278 (591)
+ +|.|+..
T Consensus 90 ~-V~NH~~~ 97 (166)
T smart00642 90 V-VINHTSD 97 (166)
T ss_pred E-CCCCCCC
Confidence 8 7888865
No 22
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=93.33 E-value=0.33 Score=52.34 Aligned_cols=137 Identities=18% Similarity=0.306 Sum_probs=81.4
Q ss_pred CChHHHHHHHHHHHHCCCcEEEEEecCCCCCc-ccCCCCCCcccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEEccCCC
Q 007722 195 YGVGDIMRTIYAMSANKMNVFHWHITDSPSFP-LNLPSEPGLAAKGSYGDDMQYSPDDVKKIVEFGLDHGVRVIPEIDSP 273 (591)
Q Consensus 195 ~~~~~lk~~Id~ma~~KlN~lhlHltDd~~fr-le~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPEID~P 273 (591)
.|.+.+++-|+.|...++|++.++.- +|. +| |+ . +.|.=+.+.++++.|+++||.||--+ |
T Consensus 7 ~~~e~~~~d~~~m~~~G~n~vri~~~---~W~~lE----P~---e------G~ydF~~lD~~l~~a~~~Gi~viL~~--~ 68 (374)
T PF02449_consen 7 WPEEEWEEDLRLMKEAGFNTVRIGEF---SWSWLE----PE---E------GQYDFSWLDRVLDLAAKHGIKVILGT--P 68 (374)
T ss_dssp S-CCHHHHHHHHHHHHT-SEEEE-CC---EHHHH-----SB---T------TB---HHHHHHHHHHHCTT-EEEEEE--C
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEEe---chhhcc----CC---C------CeeecHHHHHHHHHHHhccCeEEEEe--c
Confidence 45689999999999999999998642 242 22 21 2 34577889999999999999999655 4
Q ss_pred Cchh-hH-HHhCchhhhhcccccCcCCCCCCcccccCCCCCcCCCCChhHHHHHHHHHHHHHHhCCC-C---ceecCCCC
Q 007722 274 GHTG-SW-AEAYPEIVTCANMFWWPAESKGEDKLAAEPGTGQLNPLNPKTYQVFKNVISDVVKMFPE-P---FFHAGADE 347 (591)
Q Consensus 274 GH~~-a~-~~~~pel~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~ll~Ev~~lF~~-~---~iHIGgDE 347 (591)
.++. .| .+.||+...- +. ++ ... ........|+.+|...+.+..+++.+.+-+.+ + -+||+ .|
T Consensus 69 ~~~~P~Wl~~~~Pe~~~~-~~----~g----~~~-~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~-NE 137 (374)
T PF02449_consen 69 TAAPPAWLYDKYPEILPV-DA----DG----RRR-GFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQID-NE 137 (374)
T ss_dssp TTTS-HHHHCCSGCCC-B--T----TT----SBE-ECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEC-CS
T ss_pred ccccccchhhhccccccc-CC----CC----CcC-ccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEec-cc
Confidence 3332 35 4578886421 10 00 000 01112357899999999999999999887764 3 45663 45
Q ss_pred CCCCCCCCCHHHHH
Q 007722 348 VTPGCWKTDPTIQS 361 (591)
Q Consensus 348 v~~~~w~~~p~~~~ 361 (591)
.... -.-||.|++
T Consensus 138 ~~~~-~~~~~~~~~ 150 (374)
T PF02449_consen 138 PGYH-RCYSPACQA 150 (374)
T ss_dssp TTCT-S--SHHHHH
T ss_pred cCcC-cCCChHHHH
Confidence 4431 123555543
No 23
>PRK14706 glycogen branching enzyme; Provisional
Probab=92.35 E-value=4.6 Score=46.86 Aligned_cols=126 Identities=11% Similarity=0.054 Sum_probs=75.5
Q ss_pred CCChH-HHHHHHHHHHHCCCcEEEEEecCC----CCCcccCCCCCCcccCCCCCCCCCC-CHHHHHHHHHHHHhcCCEEE
Q 007722 194 YYGVG-DIMRTIYAMSANKMNVFHWHITDS----PSFPLNLPSEPGLAAKGSYGDDMQY-SPDDVKKIVEFGLDHGVRVI 267 (591)
Q Consensus 194 f~~~~-~lk~~Id~ma~~KlN~lhlHltDd----~~frle~~~~P~Lt~~ga~~~~~~Y-T~~ei~eiv~yA~~rgI~VI 267 (591)
|.+.. .+.++|+.+..+++|.+++-..-. .+|.+....| +.+...| |.+|+|++|+-|.++||.||
T Consensus 163 ~~ty~~~~~~l~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~--------~~~~~~~g~~~~~~~lv~~~H~~gi~Vi 234 (639)
T PRK14706 163 FLNYRELAHRLGEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGY--------YAPTSRLGTPEDFKYLVNHLHGLGIGVI 234 (639)
T ss_pred ccCHHHHHHHHHHHHHHcCCCEEEccchhcCCCCCCCCcCcccc--------cccccccCCHHHHHHHHHHHHHCCCEEE
Confidence 45543 445667999999999988754311 1343333222 1122222 89999999999999999999
Q ss_pred EccCCCCchhhHHHhCchhhhhcccccCcCC-----CCCCcccccCCCCCcCCCCChhHHHHHHHHHHHHHHhCC
Q 007722 268 PEIDSPGHTGSWAEAYPEIVTCANMFWWPAE-----SKGEDKLAAEPGTGQLNPLNPKTYQVFKNVISDVVKMFP 337 (591)
Q Consensus 268 PEID~PGH~~a~~~~~pel~~~~~~~~~~~~-----~~~~~~~~~~~~~~~L~~~~~~t~~fl~~ll~Ev~~lF~ 337 (591)
.++ ++.|+..-......+-.. ..+...+. .+|+. ..+|..+|++.+|+.+.+.-.++-|.
T Consensus 235 lD~-v~nH~~~~~~~l~~~dg~-~~y~~~~~~~g~~~~w~~--------~~~~~~~~eVr~~l~~~~~~W~~e~~ 299 (639)
T PRK14706 235 LDW-VPGHFPTDESGLAHFDGG-PLYEYADPRKGYHYDWNT--------YIFDYGRNEVVMFLIGSALKWLQDFH 299 (639)
T ss_pred EEe-cccccCcchhhhhccCCC-cceeccCCcCCcCCCCCC--------cccCCCCHHHHHHHHHHHHHHHHHhC
Confidence 888 788975311110000000 00000110 12321 24788999999999999888876553
No 24
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=92.28 E-value=5.4 Score=46.95 Aligned_cols=182 Identities=10% Similarity=0.097 Sum_probs=100.2
Q ss_pred ChHH-HHHHHHHHHHCCCcEEEEEecCC----CCCcccCCCCCCcccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEEcc
Q 007722 196 GVGD-IMRTIYAMSANKMNVFHWHITDS----PSFPLNLPSEPGLAAKGSYGDDMQYSPDDVKKIVEFGLDHGVRVIPEI 270 (591)
Q Consensus 196 ~~~~-lk~~Id~ma~~KlN~lhlHltDd----~~frle~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPEI 270 (591)
+... ..+.|+.+..+++|.+++-..-. .+|-+....|=.+.+ . +=|.+|+|+||+-|.++||.||-.+
T Consensus 248 ty~~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~--~-----~Gtp~dlk~LVd~aH~~GI~VilDv 320 (758)
T PLN02447 248 SYREFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSS--R-----SGTPEDLKYLIDKAHSLGLRVLMDV 320 (758)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCccccc--c-----cCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 4444 36789999999999999865322 234444333322221 1 1288999999999999999999887
Q ss_pred CCCCchhhHH-HhCchhhhhcccccCcCCCCCCcccccCCCCCcCCCCChhHHHHHHHHHHHHHHhCC--C---------
Q 007722 271 DSPGHTGSWA-EAYPEIVTCANMFWWPAESKGEDKLAAEPGTGQLNPLNPKTYQVFKNVISDVVKMFP--E--------- 338 (591)
Q Consensus 271 D~PGH~~a~~-~~~pel~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~ll~Ev~~lF~--~--------- 338 (591)
++.|+..-. .....+-.....++-.+...+. ..-....+|..++++.+||.+.+.-.++-|. +
T Consensus 321 -V~nH~~~~~~~gl~~fDg~~~~Yf~~~~~g~~----~~w~~~~~N~~~~eVr~fLl~~~~~Wl~ey~IDGfRfDaV~sm 395 (758)
T PLN02447 321 -VHSHASKNTLDGLNGFDGTDGSYFHSGPRGYH----WLWDSRLFNYGNWEVLRFLLSNLRWWLEEYKFDGFRFDGVTSM 395 (758)
T ss_pred -ccccccccccccccccCCCCccccccCCCCCc----CcCCCceecCCCHHHHHHHHHHHHHHHHHhCcccccccchhhh
Confidence 788986311 0000110000011100100000 0001235888999999999999988887542 1
Q ss_pred CceecCCCCCCCCCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCeEEEeccc
Q 007722 339 PFFHAGADEVTPGCWKTDPTIQSFLSNGGSLSQVLEKFVNETFPYIVSLNRTVIYWEDV 397 (591)
Q Consensus 339 ~~iHIGgDEv~~~~w~~~p~~~~~m~~~g~~~~l~~~f~~~~~~~l~~~gk~~~~W~d~ 397 (591)
-|.|-|...-+...+.+ + -+++.+.--..|+..+.+.+++.....+.=.|.
T Consensus 396 lY~~hg~~~~f~~~~~~------~--~g~~~d~~a~~fL~~~N~~i~~~~p~~~~IAEd 446 (758)
T PLN02447 396 LYHHHGLQMAFTGNYNE------Y--FGMATDVDAVVYLMLANDLLHGLYPEAVTIAED 446 (758)
T ss_pred hccccCcccccccCccc------c--cCCccChHHHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 25565544322222211 0 011111112468888888888766555444443
No 25
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=92.10 E-value=1.4 Score=50.08 Aligned_cols=120 Identities=13% Similarity=0.153 Sum_probs=72.1
Q ss_pred hHHHHHHHHHHHHCCCcEEEEEecCC----CCCcccCCCCCCcccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEEccCC
Q 007722 197 VGDIMRTIYAMSANKMNVFHWHITDS----PSFPLNLPSEPGLAAKGSYGDDMQYSPDDVKKIVEFGLDHGVRVIPEIDS 272 (591)
Q Consensus 197 ~~~lk~~Id~ma~~KlN~lhlHltDd----~~frle~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPEID~ 272 (591)
..-|.+-||.+..+++|.++|-..-+ .+|.+....|=.+ ...|+ |.+|+|+||+-|.++||+||-.+ +
T Consensus 110 ~~gi~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~--~~~~G-----~~~e~k~lV~~aH~~Gi~VilD~-V 181 (542)
T TIGR02402 110 FDAAIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAP--HNAYG-----GPDDLKALVDAAHGLGLGVILDV-V 181 (542)
T ss_pred HHHHHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCcccc--ccccC-----CHHHHHHHHHHHHHCCCEEEEEE-c
Confidence 45566668999999999999876421 2344433222111 12222 89999999999999999999877 6
Q ss_pred CCchhhHHHhCchhhhhcccccCcCCCCCCcccccCCCCCcCCCCCh---hHHHHHHHHHHHHHHhC
Q 007722 273 PGHTGSWAEAYPEIVTCANMFWWPAESKGEDKLAAEPGTGQLNPLNP---KTYQVFKNVISDVVKMF 336 (591)
Q Consensus 273 PGH~~a~~~~~pel~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~---~t~~fl~~ll~Ev~~lF 336 (591)
+.|+..-....+.+ . .-+.....+.|+ ..+|..++ ++.+++.+.+.-.++-|
T Consensus 182 ~NH~~~~~~~~~~~--~-~y~~~~~~~~wg---------~~~n~~~~~~~~vr~~i~~~~~~W~~e~ 236 (542)
T TIGR02402 182 YNHFGPEGNYLPRY--A-PYFTDRYSTPWG---------AAINFDGPGSDEVRRYILDNALYWLREY 236 (542)
T ss_pred cCCCCCcccccccc--C-ccccCCCCCCCC---------CccccCCCcHHHHHHHHHHHHHHHHHHh
Confidence 78885321111111 0 000000112233 24677777 88888888777766543
No 26
>PRK12313 glycogen branching enzyme; Provisional
Probab=92.04 E-value=2 Score=49.70 Aligned_cols=127 Identities=10% Similarity=0.056 Sum_probs=77.0
Q ss_pred CCChHHH-HHHHHHHHHCCCcEEEEEecC----CCCCcccCCCCCCcccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEE
Q 007722 194 YYGVGDI-MRTIYAMSANKMNVFHWHITD----SPSFPLNLPSEPGLAAKGSYGDDMQYSPDDVKKIVEFGLDHGVRVIP 268 (591)
Q Consensus 194 f~~~~~l-k~~Id~ma~~KlN~lhlHltD----d~~frle~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIP 268 (591)
+-+...| .++||.+..+++|.++|-..- ..+|.+....|=.+. ..| =|.+|+|+||+-|.++||.||-
T Consensus 166 ~g~~~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~--~~~-----Gt~~d~k~lv~~~H~~Gi~Vil 238 (633)
T PRK12313 166 PLSYRELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPT--SRY-----GTPEDFMYLVDALHQNGIGVIL 238 (633)
T ss_pred ccCHHHHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCC--CCC-----CCHHHHHHHHHHHHHCCCEEEE
Confidence 3454444 466899999999999976531 123444443332221 112 2899999999999999999998
Q ss_pred ccCCCCchhhHHHhCchhhhhcccccCcCC-----CCCCcccccCCCCCcCCCCChhHHHHHHHHHHHHHHhCC
Q 007722 269 EIDSPGHTGSWAEAYPEIVTCANMFWWPAE-----SKGEDKLAAEPGTGQLNPLNPKTYQVFKNVISDVVKMFP 337 (591)
Q Consensus 269 EID~PGH~~a~~~~~pel~~~~~~~~~~~~-----~~~~~~~~~~~~~~~L~~~~~~t~~fl~~ll~Ev~~lF~ 337 (591)
.+ +|.|+..-....+.+. ....+..+++ ..|+ ...||..+|++.+++.+++.-.++.|.
T Consensus 239 D~-V~nH~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~w~--------~~~~n~~~~~vr~~l~~~~~~W~~~~~ 302 (633)
T PRK12313 239 DW-VPGHFPKDDDGLAYFD-GTPLYEYQDPRRAENPDWG--------ALNFDLGKNEVRSFLISSALFWLDEYH 302 (633)
T ss_pred EE-CCCCCCCCcccccccC-CCcceeecCCCCCcCCCCC--------CcccCCCCHHHHHHHHHHHHHHHHHhC
Confidence 88 6889853110001110 0000000110 0121 125888999999999999888877643
No 27
>PRK14705 glycogen branching enzyme; Provisional
Probab=92.03 E-value=1.4 Score=54.39 Aligned_cols=121 Identities=11% Similarity=0.043 Sum_probs=76.0
Q ss_pred HHHHHHHHHHCCCcEEEEEecC----CCCCcccCCCCCCcccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEEccCCCCc
Q 007722 200 IMRTIYAMSANKMNVFHWHITD----SPSFPLNLPSEPGLAAKGSYGDDMQYSPDDVKKIVEFGLDHGVRVIPEIDSPGH 275 (591)
Q Consensus 200 lk~~Id~ma~~KlN~lhlHltD----d~~frle~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPEID~PGH 275 (591)
..++||.+..+++|.+++-..- +.+|-+....|=..+ ..|+ |.+|+|++|+.|.++||.||-.+ +|+|
T Consensus 768 ~~~lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~--~ryG-----t~~dfk~lVd~~H~~GI~VILD~-V~nH 839 (1224)
T PRK14705 768 AKELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPT--SRFG-----HPDEFRFLVDSLHQAGIGVLLDW-VPAH 839 (1224)
T ss_pred HHHHHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcC--cccC-----CHHHHHHHHHHHHHCCCEEEEEe-cccc
Confidence 4577899999999999886542 124555444432222 2222 89999999999999999999777 7899
Q ss_pred hhhHHHhCchhhhhcccccCcCC-----CCCCcccccCCCCCcCCCCChhHHHHHHHHHHHHHHhCC
Q 007722 276 TGSWAEAYPEIVTCANMFWWPAE-----SKGEDKLAAEPGTGQLNPLNPKTYQVFKNVISDVVKMFP 337 (591)
Q Consensus 276 ~~a~~~~~pel~~~~~~~~~~~~-----~~~~~~~~~~~~~~~L~~~~~~t~~fl~~ll~Ev~~lF~ 337 (591)
...-.-....+... ..+..++. .+|+ ...+|..++++.+|+-+.+.-.++-|.
T Consensus 840 ~~~d~~~l~~fdg~-~~y~~~d~~~g~~~~Wg--------~~~fn~~~~eVr~fli~~a~~Wl~eyh 897 (1224)
T PRK14705 840 FPKDSWALAQFDGQ-PLYEHADPALGEHPDWG--------TLIFDFGRTEVRNFLVANALYWLDEFH 897 (1224)
T ss_pred CCcchhhhhhcCCC-cccccCCcccCCCCCCC--------CceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 84311000001000 00000110 1232 135788999999999998888887653
No 28
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=91.78 E-value=1.7 Score=50.17 Aligned_cols=121 Identities=13% Similarity=0.099 Sum_probs=73.6
Q ss_pred HHHHHHHHHHCCCcEEEEEec-CC---CCCcccCCCCCCcccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEEccCCCCc
Q 007722 200 IMRTIYAMSANKMNVFHWHIT-DS---PSFPLNLPSEPGLAAKGSYGDDMQYSPDDVKKIVEFGLDHGVRVIPEIDSPGH 275 (591)
Q Consensus 200 lk~~Id~ma~~KlN~lhlHlt-Dd---~~frle~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPEID~PGH 275 (591)
+.++||.+..+++|.++|-.. +. ..|.+....|=.+. ..|+ |.+|+|+||+-|.++||.||-.+ ++.|
T Consensus 159 ~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~--~~~G-----t~~dlk~lV~~~H~~Gi~VilD~-V~NH 230 (613)
T TIGR01515 159 ADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPT--SRFG-----TPDDFMYFVDACHQAGIGVILDW-VPGH 230 (613)
T ss_pred HHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccc--cccC-----CHHHHHHHHHHHHHCCCEEEEEe-cccC
Confidence 345679999999999998432 11 23554443332221 1222 89999999999999999999887 6789
Q ss_pred hhhHHHhCchhhhhcccccCcC-----CCCCCcccccCCCCCcCCCCChhHHHHHHHHHHHHHHhCC
Q 007722 276 TGSWAEAYPEIVTCANMFWWPA-----ESKGEDKLAAEPGTGQLNPLNPKTYQVFKNVISDVVKMFP 337 (591)
Q Consensus 276 ~~a~~~~~pel~~~~~~~~~~~-----~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~ll~Ev~~lF~ 337 (591)
+..-......+... ..+...+ ...|+ ...+|..+|++.+++.+++.-.++-|.
T Consensus 231 ~~~~~~~~~~~~~~-~~y~~~~~~~~~~~~w~--------~~~~~~~~~~Vr~~l~~~~~~W~~ey~ 288 (613)
T TIGR01515 231 FPKDDHGLAEFDGT-PLYEHKDPRDGEHWDWG--------TLIFDYGRPEVRNFLVANALYWAEFYH 288 (613)
T ss_pred cCCccchhhccCCC-cceeccCCccCcCCCCC--------CceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 86311100011000 0000000 01121 125788999999999999999887653
No 29
>PLN02960 alpha-amylase
Probab=91.37 E-value=1.8 Score=51.19 Aligned_cols=127 Identities=10% Similarity=0.108 Sum_probs=78.0
Q ss_pred CCChHHH-HHHHHHHHHCCCcEEEEEec----CCCCCcccCCCCCCcccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEE
Q 007722 194 YYGVGDI-MRTIYAMSANKMNVFHWHIT----DSPSFPLNLPSEPGLAAKGSYGDDMQYSPDDVKKIVEFGLDHGVRVIP 268 (591)
Q Consensus 194 f~~~~~l-k~~Id~ma~~KlN~lhlHlt----Dd~~frle~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIP 268 (591)
+-+...+ .+.|+.+..+++|.++|-.. +..+|.+....|=... +.| =|.+|+++||+-|.++||.||-
T Consensus 412 ~gtf~~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~--~~y-----Gtp~dfk~LVd~aH~~GI~VIL 484 (897)
T PLN02960 412 ISSFKEFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVS--SRF-----GTPDDFKRLVDEAHGLGLLVFL 484 (897)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcc--ccc-----CCHHHHHHHHHHHHHCCCEEEE
Confidence 3455555 47799999999999998764 2234544433332111 222 2899999999999999999998
Q ss_pred ccCCCCchhhHH-HhCchhhhhcccccCcC----CCCCCcccccCCCCCcCCCCChhHHHHHHHHHHHHHHhC
Q 007722 269 EIDSPGHTGSWA-EAYPEIVTCANMFWWPA----ESKGEDKLAAEPGTGQLNPLNPKTYQVFKNVISDVVKMF 336 (591)
Q Consensus 269 EID~PGH~~a~~-~~~pel~~~~~~~~~~~----~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~ll~Ev~~lF 336 (591)
.+ +|.|+..-- .....+....+.+...+ ...|+ ...+|..++++.+|+-+.+.-.++-|
T Consensus 485 Dv-V~NH~~~d~~~~L~~FDG~~~~Yf~~~~~g~~~~WG--------~~~fNy~~~eVr~fLlsna~yWl~Ey 548 (897)
T PLN02960 485 DI-VHSYAAADEMVGLSLFDGSNDCYFHSGKRGHHKRWG--------TRMFKYGDHEVLHFLLSNLNWWVTEY 548 (897)
T ss_pred Ee-cccccCCccccchhhcCCCccceeecCCCCccCCCC--------CcccCCCCHHHHHHHHHHHHHHHHHH
Confidence 87 788985410 00001100000111000 01232 23578999999999999888877654
No 30
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=90.80 E-value=1.1 Score=45.37 Aligned_cols=153 Identities=16% Similarity=0.169 Sum_probs=89.0
Q ss_pred CcccceeCCCCCCCChHHHHHHHHHHHHCCCcEEEEEecCCCCCcccCCCCCCcccCCCCCCCCCCCHHHHHHHHHHHHh
Q 007722 182 PHRGLLLDTSRNYYGVGDIMRTIYAMSANKMNVFHWHITDSPSFPLNLPSEPGLAAKGSYGDDMQYSPDDVKKIVEFGLD 261 (591)
Q Consensus 182 ~~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lhlHltDd~~frle~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~ 261 (591)
.+||+-.. +..-....+.++.|+..++|.+-+.+. |..-.+..|... + ..-..+.++++|+.|++
T Consensus 9 ~~~G~n~~----w~~~~~~~~~~~~~~~~G~n~VRi~v~----~~~~~~~~~~~~----~---~~~~~~~ld~~v~~a~~ 73 (281)
T PF00150_consen 9 NWRGFNTH----WYNPSITEADFDQLKALGFNTVRIPVG----WEAYQEPNPGYN----Y---DETYLARLDRIVDAAQA 73 (281)
T ss_dssp EEEEEEET----TSGGGSHHHHHHHHHHTTESEEEEEEE----STSTSTTSTTTS----B---THHHHHHHHHHHHHHHH
T ss_pred Eeeeeecc----cCCCCCHHHHHHHHHHCCCCEEEeCCC----HHHhcCCCCCcc----c---cHHHHHHHHHHHHHHHh
Confidence 56777664 443347889999999999999999986 311111111110 0 00134789999999999
Q ss_pred cCCEEEEccCCCCchhhHHHhCchhhhhcccccCcCCCCCCcccccCCCCCcCCCCChhHHHHHHHHHHHHHHhCCCCce
Q 007722 262 HGVRVIPEIDSPGHTGSWAEAYPEIVTCANMFWWPAESKGEDKLAAEPGTGQLNPLNPKTYQVFKNVISDVVKMFPEPFF 341 (591)
Q Consensus 262 rgI~VIPEID~PGH~~a~~~~~pel~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~ll~Ev~~lF~~~~i 341 (591)
+||.||..+ |.. |.. +. .+......+...+.+.+++..++.-|.+.--
T Consensus 74 ~gi~vild~----h~~------~~w--~~--------------------~~~~~~~~~~~~~~~~~~~~~la~~y~~~~~ 121 (281)
T PF00150_consen 74 YGIYVILDL----HNA------PGW--AN--------------------GGDGYGNNDTAQAWFKSFWRALAKRYKDNPP 121 (281)
T ss_dssp TT-EEEEEE----EES------TTC--SS--------------------STSTTTTHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred CCCeEEEEe----ccC------ccc--cc--------------------cccccccchhhHHHHHhhhhhhccccCCCCc
Confidence 999999765 332 111 00 0111233455667788888888888743222
Q ss_pred ecCC---CCCCCCCCC-CCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCe
Q 007722 342 HAGA---DEVTPGCWK-TDPTIQSFLSNGGSLSQVLEKFVNETFPYIVSLNRT 390 (591)
Q Consensus 342 HIGg---DEv~~~~w~-~~p~~~~~m~~~g~~~~l~~~f~~~~~~~l~~~gk~ 390 (591)
++|= .|....... ..+. ...+.+..|.+++.+.|++.+..
T Consensus 122 v~~~el~NEP~~~~~~~~w~~---------~~~~~~~~~~~~~~~~Ir~~~~~ 165 (281)
T PF00150_consen 122 VVGWELWNEPNGGNDDANWNA---------QNPADWQDWYQRAIDAIRAADPN 165 (281)
T ss_dssp TEEEESSSSGCSTTSTTTTSH---------HHTHHHHHHHHHHHHHHHHTTSS
T ss_pred EEEEEecCCccccCCcccccc---------ccchhhhhHHHHHHHHHHhcCCc
Confidence 3332 333322110 0000 12355778999999999997753
No 31
>PRK12568 glycogen branching enzyme; Provisional
Probab=90.80 E-value=2.8 Score=49.11 Aligned_cols=127 Identities=11% Similarity=0.017 Sum_probs=76.8
Q ss_pred CCChHHH-HHHHHHHHHCCCcEEEEEecCC----CCCcccCCCCCCcccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEE
Q 007722 194 YYGVGDI-MRTIYAMSANKMNVFHWHITDS----PSFPLNLPSEPGLAAKGSYGDDMQYSPDDVKKIVEFGLDHGVRVIP 268 (591)
Q Consensus 194 f~~~~~l-k~~Id~ma~~KlN~lhlHltDd----~~frle~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIP 268 (591)
+.+...| .++|+.+..+++|.++|-..-. .+|.+....|=..+ . .+=|.+|+|++|+.|.++||.||-
T Consensus 265 ~~~~~~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~--~-----~~G~~~dfk~lV~~~H~~Gi~VIl 337 (730)
T PRK12568 265 PLDWPTLAEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPT--A-----RHGSPDGFAQFVDACHRAGIGVIL 337 (730)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccC--c-----ccCCHHHHHHHHHHHHHCCCEEEE
Confidence 4454444 4668999999999998865421 23444332221111 1 122899999999999999999999
Q ss_pred ccCCCCchhhHHHhCchhhhhcccccCcCC-----CCCCcccccCCCCCcCCCCChhHHHHHHHHHHHHHHhCC
Q 007722 269 EIDSPGHTGSWAEAYPEIVTCANMFWWPAE-----SKGEDKLAAEPGTGQLNPLNPKTYQVFKNVISDVVKMFP 337 (591)
Q Consensus 269 EID~PGH~~a~~~~~pel~~~~~~~~~~~~-----~~~~~~~~~~~~~~~L~~~~~~t~~fl~~ll~Ev~~lF~ 337 (591)
.+ +|.|+..-......+-.. ..+..++. .+|+ ...+|..+|++.+|+-+.+.-.++.|.
T Consensus 338 D~-V~nH~~~d~~~l~~fdg~-~~Ye~~d~~~g~~~~W~--------~~~~N~~~peVr~~li~~a~~Wl~eyh 401 (730)
T PRK12568 338 DW-VSAHFPDDAHGLAQFDGA-ALYEHADPREGMHRDWN--------TLIYNYGRPEVTAYLLGSALEWIEHYH 401 (730)
T ss_pred Ee-ccccCCccccccccCCCc-cccccCCCcCCccCCCC--------CeecccCCHHHHHHHHHHHHHHHHHhC
Confidence 98 689986421111111000 00000000 1222 124789999999999998888877653
No 32
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=90.14 E-value=1.9 Score=50.47 Aligned_cols=128 Identities=16% Similarity=0.191 Sum_probs=70.8
Q ss_pred HHHHHHHCCCcEEEEEecCCCCCcccCCCCCCcccCC-----CC------CCCCCC----CHHHHHHHHHHHHhcCCEEE
Q 007722 203 TIYAMSANKMNVFHWHITDSPSFPLNLPSEPGLAAKG-----SY------GDDMQY----SPDDVKKIVEFGLDHGVRVI 267 (591)
Q Consensus 203 ~Id~ma~~KlN~lhlHltDd~~frle~~~~P~Lt~~g-----a~------~~~~~Y----T~~ei~eiv~yA~~rgI~VI 267 (591)
.||.+..+++|.++|-..=+ ....+.+...| .| .++..| +.+|+|+||+-|.++||+||
T Consensus 189 ~LdyLk~LGvtaI~L~Pi~~------~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VI 262 (688)
T TIGR02100 189 MIDYLKKLGVTAVELLPVHA------FIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVI 262 (688)
T ss_pred hhHHHHHcCCCEEEECCccc------CCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEE
Confidence 48899999999998765311 01111111111 11 223444 68999999999999999999
Q ss_pred EccCCCCchhhHHHhCchhhhh---cccccCcCCCCCCcccccCCCCCcCCCCChhHHHHHHHHHHHHHHhCC
Q 007722 268 PEIDSPGHTGSWAEAYPEIVTC---ANMFWWPAESKGEDKLAAEPGTGQLNPLNPKTYQVFKNVISDVVKMFP 337 (591)
Q Consensus 268 PEID~PGH~~a~~~~~pel~~~---~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~ll~Ev~~lF~ 337 (591)
-.+ ++.|+..-....|.+... ...++.-+..+.+.......+.+.||..+|++.++|.+.+.-.+.-|.
T Consensus 263 lDv-V~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~~~~~~~~~~g~gn~ln~~~p~vr~~i~d~l~~W~~e~g 334 (688)
T TIGR02100 263 LDV-VYNHTAEGNELGPTLSFRGIDNASYYRLQPDDKRYYINDTGTGNTLNLSHPRVLQMVMDSLRYWVTEMH 334 (688)
T ss_pred EEE-CcCCccCcCCCCCcccccCCCCCcceEecCCCCceecCCCCccccccCCCHHHHHHHHHHHHHHHHHcC
Confidence 887 678886422111111000 000000000000000001112346899999999999998888776543
No 33
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=89.03 E-value=5 Score=45.71 Aligned_cols=75 Identities=11% Similarity=0.164 Sum_probs=51.1
Q ss_pred ChHHHHHHHHHHHHCCCcEEEEEec---CCCCCcccCCCCCCcccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEEccCC
Q 007722 196 GVGDIMRTIYAMSANKMNVFHWHIT---DSPSFPLNLPSEPGLAAKGSYGDDMQYSPDDVKKIVEFGLDHGVRVIPEIDS 272 (591)
Q Consensus 196 ~~~~lk~~Id~ma~~KlN~lhlHlt---Dd~~frle~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPEID~ 272 (591)
.+.-|.+-||.++.+++|.+++-.- ....+.+.+..|=.+.. .+=|.+|+++||+-|.++||.||-.+ +
T Consensus 31 dl~gi~~~ldyl~~lGv~~i~l~P~~~~~~~~~gY~~~d~~~id~-------~~Gt~~d~~~lv~~~h~~gi~vilD~-V 102 (551)
T PRK10933 31 DLRGVTQRLDYLQKLGVDAIWLTPFYVSPQVDNGYDVANYTAIDP-------TYGTLDDFDELVAQAKSRGIRIILDM-V 102 (551)
T ss_pred CHHHHHHhhHHHHhCCCCEEEECCCCCCCCCCCCCCcccCCCcCc-------ccCCHHHHHHHHHHHHHCCCEEEEEE-C
Confidence 3566777889999999999987542 11112222222211110 11289999999999999999999888 7
Q ss_pred CCchhh
Q 007722 273 PGHTGS 278 (591)
Q Consensus 273 PGH~~a 278 (591)
+.|+..
T Consensus 103 ~NH~s~ 108 (551)
T PRK10933 103 FNHTST 108 (551)
T ss_pred CCCccC
Confidence 888864
No 34
>PRK05402 glycogen branching enzyme; Provisional
Probab=88.48 E-value=5.4 Score=47.06 Aligned_cols=124 Identities=11% Similarity=0.039 Sum_probs=76.4
Q ss_pred CCChHHH-HHHHHHHHHCCCcEEEEEecC----CCCCcccCCCCCCcccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEE
Q 007722 194 YYGVGDI-MRTIYAMSANKMNVFHWHITD----SPSFPLNLPSEPGLAAKGSYGDDMQYSPDDVKKIVEFGLDHGVRVIP 268 (591)
Q Consensus 194 f~~~~~l-k~~Id~ma~~KlN~lhlHltD----d~~frle~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIP 268 (591)
+-+...| .++||.+..+++|.++|-..- +..|.+....|=.+. . .+=|.+|+|+||+-|.++||.||-
T Consensus 261 ~g~~~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~--~-----~~Gt~~dfk~lV~~~H~~Gi~Vil 333 (726)
T PRK05402 261 FLSYRELADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPT--S-----RFGTPDDFRYFVDACHQAGIGVIL 333 (726)
T ss_pred ccCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcC--c-----ccCCHHHHHHHHHHHHHCCCEEEE
Confidence 3454444 455799999999999986541 123544444332221 1 223899999999999999999998
Q ss_pred ccCCCCchhhH---HHhCchhhhhcccccCcCC-----CCCCcccccCCCCCcCCCCChhHHHHHHHHHHHHHHhCC
Q 007722 269 EIDSPGHTGSW---AEAYPEIVTCANMFWWPAE-----SKGEDKLAAEPGTGQLNPLNPKTYQVFKNVISDVVKMFP 337 (591)
Q Consensus 269 EID~PGH~~a~---~~~~pel~~~~~~~~~~~~-----~~~~~~~~~~~~~~~L~~~~~~t~~fl~~ll~Ev~~lF~ 337 (591)
.+ +|.|+..- +..+..- ..+..++. .+|+ ...+|..+|++.+++.+.+.-.++-|.
T Consensus 334 D~-V~NH~~~~~~~~~~~~~~----~~y~~~~~~~~~~~~w~--------~~~~n~~~~~v~~~l~~~~~~W~~e~~ 397 (726)
T PRK05402 334 DW-VPAHFPKDAHGLARFDGT----ALYEHADPREGEHPDWG--------TLIFNYGRNEVRNFLVANALYWLEEFH 397 (726)
T ss_pred EE-CCCCCCCCccchhccCCC----cceeccCCcCCccCCCC--------CccccCCCHHHHHHHHHHHHHHHHHhC
Confidence 87 68898531 1111000 00000000 1122 124788999999999998888877543
No 35
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=87.92 E-value=1.8 Score=49.25 Aligned_cols=75 Identities=7% Similarity=0.098 Sum_probs=51.0
Q ss_pred ChHHHHHHHHHHHHCCCcEEEEEecCC---CCCcccCCCCCCcccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEEccCC
Q 007722 196 GVGDIMRTIYAMSANKMNVFHWHITDS---PSFPLNLPSEPGLAAKGSYGDDMQYSPDDVKKIVEFGLDHGVRVIPEIDS 272 (591)
Q Consensus 196 ~~~~lk~~Id~ma~~KlN~lhlHltDd---~~frle~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPEID~ 272 (591)
...-|.+-+|.++.+++|.+++-.--. ....+.+..|=.+.. .+=|.+|+++||+.|.++||+||-.+ +
T Consensus 25 ~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~-------~~Gt~~~~~~lv~~ah~~gi~vilD~-v 96 (543)
T TIGR02403 25 DLRGIIEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINP-------LFGTMADFEELVSEAKKRNIKIMLDM-V 96 (543)
T ss_pred CHHHHHHhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccCc-------ccCCHHHHHHHHHHHHHCCCEEEEEE-C
Confidence 466777888999999999999754210 111222222111111 12289999999999999999999888 7
Q ss_pred CCchhh
Q 007722 273 PGHTGS 278 (591)
Q Consensus 273 PGH~~a 278 (591)
|.|+..
T Consensus 97 ~NH~~~ 102 (543)
T TIGR02403 97 FNHTST 102 (543)
T ss_pred cccccc
Confidence 888853
No 36
>PRK03705 glycogen debranching enzyme; Provisional
Probab=87.38 E-value=3.2 Score=48.29 Aligned_cols=126 Identities=17% Similarity=0.217 Sum_probs=71.4
Q ss_pred HHHHHHHCCCcEEEEEecCCCCCcccCCCCCCcccCC-----C------CCCCCCCC------HHHHHHHHHHHHhcCCE
Q 007722 203 TIYAMSANKMNVFHWHITDSPSFPLNLPSEPGLAAKG-----S------YGDDMQYS------PDDVKKIVEFGLDHGVR 265 (591)
Q Consensus 203 ~Id~ma~~KlN~lhlHltDd~~frle~~~~P~Lt~~g-----a------~~~~~~YT------~~ei~eiv~yA~~rgI~ 265 (591)
.||.+..+++|.++|-..-+ ..+.+.+...| . +.++..|. .+|+|+||+-|.++||+
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~------~~~~~~~~~~g~~~ywGYd~~~yfa~d~~ygt~~~~~~~efk~LV~~~H~~GI~ 257 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQ------FASEPRLQRMGLSNYWGYNPLAMFALDPAYASGPETALDEFRDAVKALHKAGIE 257 (658)
T ss_pred chHHHHHcCCCEEEecCccc------CCCcccccccccccccCcccccccccccccCCCCcchHHHHHHHHHHHHHCCCE
Confidence 48899999999999865321 11111111111 0 12233443 37999999999999999
Q ss_pred EEEccCCCCchhhHHHhCchhhh--h-cccccCcCCCCCCcccccCCCCCcCCCCChhHHHHHHHHHHHHHHhCC
Q 007722 266 VIPEIDSPGHTGSWAEAYPEIVT--C-ANMFWWPAESKGEDKLAAEPGTGQLNPLNPKTYQVFKNVISDVVKMFP 337 (591)
Q Consensus 266 VIPEID~PGH~~a~~~~~pel~~--~-~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~ll~Ev~~lF~ 337 (591)
||-.+ ++.|+.......|.+.. . ...+++-+.. +.......+...||..+|++.+++.+.+.-.++.|.
T Consensus 258 VIlDv-V~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~--g~~~~~~g~g~~ln~~~p~Vr~~iid~l~~W~~e~g 329 (658)
T PRK03705 258 VILDV-VFNHSAELDLDGPTLSLRGIDNRSYYWIRED--GDYHNWTGCGNTLNLSHPAVVDWAIDCLRYWVETCH 329 (658)
T ss_pred EEEEE-cccCccCcCCCCcchhcccCCCccceEECCC--CCcCCCCCccCcccCCCHHHHHHHHHHHHHHHHHhC
Confidence 99888 67888642111221100 0 0011110000 000000112247899999999999999998887654
No 37
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=87.21 E-value=0.56 Score=47.95 Aligned_cols=74 Identities=15% Similarity=0.197 Sum_probs=49.2
Q ss_pred hHHHHHHHHHHHHCCCcEEEEEec---CCCCCcccCCCCCCcccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEEccCCC
Q 007722 197 VGDIMRTIYAMSANKMNVFHWHIT---DSPSFPLNLPSEPGLAAKGSYGDDMQYSPDDVKKIVEFGLDHGVRVIPEIDSP 273 (591)
Q Consensus 197 ~~~lk~~Id~ma~~KlN~lhlHlt---Dd~~frle~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPEID~P 273 (591)
..-|.+-||.++.+++|.+++-.. ....|.+....|=.+. ..+=|.+|+++||+-|.+|||+||-.+ ++
T Consensus 3 ~~gi~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd-------~~~Gt~~d~~~Lv~~~h~~gi~VilD~-V~ 74 (316)
T PF00128_consen 3 FRGIIDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVD-------PRFGTMEDFKELVDAAHKRGIKVILDV-VP 74 (316)
T ss_dssp HHHHHHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEES-------TTTBHHHHHHHHHHHHHHTTCEEEEEE-ET
T ss_pred HHHHHHhhHHHHHcCCCceecccccccccccccccceeeeccc-------cccchhhhhhhhhhccccccceEEEee-ec
Confidence 345777789999999999997542 1112222222221111 011189999999999999999999877 56
Q ss_pred Cchhh
Q 007722 274 GHTGS 278 (591)
Q Consensus 274 GH~~a 278 (591)
.|+..
T Consensus 75 NH~~~ 79 (316)
T PF00128_consen 75 NHTSD 79 (316)
T ss_dssp SEEET
T ss_pred ccccc
Confidence 78854
No 38
>PLN02784 alpha-amylase
Probab=87.17 E-value=8.1 Score=45.89 Aligned_cols=88 Identities=11% Similarity=0.055 Sum_probs=56.7
Q ss_pred ccceeCCCCCCCChHHHHHHHHHHHHCCCcEEEEEecCC--CCCcccCCCCCCcccCCCCCCCCCCCHHHHHHHHHHHHh
Q 007722 184 RGLLLDTSRNYYGVGDIMRTIYAMSANKMNVFHWHITDS--PSFPLNLPSEPGLAAKGSYGDDMQYSPDDVKKIVEFGLD 261 (591)
Q Consensus 184 RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lhlHltDd--~~frle~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~ 261 (591)
.||.-|+-..--=-..|++-++.++.+++|.+.+-..-. ..+.|....|=.|. ..+=|++|+++||+-|.+
T Consensus 507 QgF~Wds~~dg~w~~~I~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~ld-------s~yGT~~ELk~LI~a~H~ 579 (894)
T PLN02784 507 QGFNWESHKSGRWYMELGEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLN-------SRYGTIDELKDLVKSFHE 579 (894)
T ss_pred EeEEcCcCCCCchHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccC-------cCcCCHHHHHHHHHHHHH
Confidence 455555543311146788889999999999999875310 01111111111111 112299999999999999
Q ss_pred cCCEEEEccCCCCchhhH
Q 007722 262 HGVRVIPEIDSPGHTGSW 279 (591)
Q Consensus 262 rgI~VIPEID~PGH~~a~ 279 (591)
+||.||-.| ++.|+...
T Consensus 580 ~GIkVIlDi-ViNH~ag~ 596 (894)
T PLN02784 580 VGIKVLGDA-VLNHRCAH 596 (894)
T ss_pred CCCEEEEEE-Cccccccc
Confidence 999999888 78898643
No 39
>COG3661 AguA Alpha-glucuronidase [Carbohydrate transport and metabolism]
Probab=86.59 E-value=27 Score=38.23 Aligned_cols=164 Identities=18% Similarity=0.221 Sum_probs=108.8
Q ss_pred CCcceEEEeeCCC--CcEEEEecChhhhhHHHHHHHHHhc-CCCcccccceEEecCCCCCcccce----eC--CCCCC--
Q 007722 126 VNESYTLHVPNDR--PTANLTAETPWGAMRGLETFSQLVW-GRPSRVPVGVYVWDDPIFPHRGLL----LD--TSRNY-- 194 (591)
Q Consensus 126 ~~E~Y~L~i~~~~--~~i~I~a~~~~G~~~g~~Tl~Ql~~-~~~~~~p~~~~I~D~P~f~~RG~m----lD--~aR~f-- 194 (591)
++|||.|..-..+ ....|.|++..|++||+=-|+.|++ ++. +. .+.|...|+-..|-+- || +-|.|
T Consensus 92 gEEGy~irt~~~~g~~~lvi~g~t~~gvlYG~F~ll~liq~g~~--v~-kl~iv~~Pk~klRMlNhWDNlDg~iERGYaG 168 (684)
T COG3661 92 GEEGYLIRTVTVGGKATLVIAGNTDIGVLYGVFRLLSLIQTGQS--VD-KLDIVSVPKVKLRMLNHWDNLDGHIERGYAG 168 (684)
T ss_pred cCcceEEEEEEeCCeEEEEEEeccceeEEeeHHHHHHHHHhccc--hh-hcchhcCcHHHHhhhhhhhccccceecccCC
Confidence 6899998765322 2478899999999999988888887 332 33 4566777777776541 22 12221
Q ss_pred -----------CChHHHHHHHHHHHHCCCcEEEEEecCCCCCcccCCCC-CC-cccCCCCCCCCCCCHHHHHHHHHHHHh
Q 007722 195 -----------YGVGDIMRTIYAMSANKMNVFHWHITDSPSFPLNLPSE-PG-LAAKGSYGDDMQYSPDDVKKIVEFGLD 261 (591)
Q Consensus 195 -----------~~~~~lk~~Id~ma~~KlN~lhlHltDd~~frle~~~~-P~-Lt~~ga~~~~~~YT~~ei~eiv~yA~~ 261 (591)
.-.+.+|.+-+.+|..++|-.-+.-.+ .++- .. +|. .++ .+++.|...-+.
T Consensus 169 ~SIFf~~n~~~~n~qR~kDYAR~laSiGINg~v~NNVN-------vk~~e~~lit~-------~fl--~k~aklAdiFR~ 232 (684)
T COG3661 169 QSIFFWWNLPGHNDQRMKDYARALASIGINGTVLNNVN-------VKKAESYLITA-------PFL--AKAAKLADIFRP 232 (684)
T ss_pred CceeeeccccccchHHHHHHHHHHhhcCcceEEecccc-------cchhhhheech-------HhH--HHHHHHHHHhhh
Confidence 113678889999999999987765322 1211 00 111 122 567777777899
Q ss_pred cCCEEEEccCCCCchhhHHHhCchhhhhcccccCcCCCCCCcccccCCCCCcCCCCChhHHHHHHHHHHHHHHhCCC
Q 007722 262 HGVRVIPEIDSPGHTGSWAEAYPEIVTCANMFWWPAESKGEDKLAAEPGTGQLNPLNPKTYQVFKNVISDVVKMFPE 338 (591)
Q Consensus 262 rgI~VIPEID~PGH~~a~~~~~pel~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~ll~Ev~~lF~~ 338 (591)
+||.|.-.|+.-.-+ +|. .-.+-||.+|++..+-++-.+|+-+..|+
T Consensus 233 YGIK~yLsinfaSP~--------~lG----------------------gL~TADPLDe~VrawWkeka~~IY~yIPD 279 (684)
T COG3661 233 YGIKVYLSINFASPM--------ELG----------------------GLKTADPLDEAVRAWWKEKADEIYKYIPD 279 (684)
T ss_pred ccceEEEEeccCCcc--------ccC----------------------CcCcCCcccHHHHHHHHHHHHHHHHhccc
Confidence 999999877654322 111 11346788999999999999999888875
No 40
>PLN02361 alpha-amylase
Probab=85.45 E-value=11 Score=41.15 Aligned_cols=72 Identities=11% Similarity=-0.012 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHCCCcEEEEEecC-CCC-CcccCCCCCCcccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEEccCCCCc
Q 007722 198 GDIMRTIYAMSANKMNVFHWHITD-SPS-FPLNLPSEPGLAAKGSYGDDMQYSPDDVKKIVEFGLDHGVRVIPEIDSPGH 275 (591)
Q Consensus 198 ~~lk~~Id~ma~~KlN~lhlHltD-d~~-frle~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPEID~PGH 275 (591)
..|++-+|.++.++++.+.+-..- ..+ ..+....+=.+. ..+=|++|+++||+-|.++||.||-.+ ++-|
T Consensus 29 ~~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~-------~~~Gt~~el~~li~~~h~~gi~vi~D~-V~NH 100 (401)
T PLN02361 29 RNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLN-------SAYGSEHLLKSLLRKMKQYNVRAMADI-VINH 100 (401)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccC-------cccCCHHHHHHHHHHHHHcCCEEEEEE-cccc
Confidence 667788899999999999876521 100 111111110111 112289999999999999999999888 5678
Q ss_pred hh
Q 007722 276 TG 277 (591)
Q Consensus 276 ~~ 277 (591)
+.
T Consensus 101 ~~ 102 (401)
T PLN02361 101 RV 102 (401)
T ss_pred cc
Confidence 73
No 41
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=85.20 E-value=3.5 Score=49.12 Aligned_cols=77 Identities=9% Similarity=0.150 Sum_probs=56.4
Q ss_pred CCChHHHHHHHHHHHHCCCcEEEEEec----CCCCCcccCCCCCCcccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEEc
Q 007722 194 YYGVGDIMRTIYAMSANKMNVFHWHIT----DSPSFPLNLPSEPGLAAKGSYGDDMQYSPDDVKKIVEFGLDHGVRVIPE 269 (591)
Q Consensus 194 f~~~~~lk~~Id~ma~~KlN~lhlHlt----Dd~~frle~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPE 269 (591)
=++.+.+.+.++.++.+++|.+.+-.- ....+.+.+..|-.+... +=|.++++++++-|+++||.||-.
T Consensus 16 ~~tf~~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~-------lGt~e~f~~Lv~aah~~Gi~VIlD 88 (879)
T PRK14511 16 GFTFDDAAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPE-------LGGEEGLRRLAAALRAHGMGLILD 88 (879)
T ss_pred CCCHHHHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCC-------CCCHHHHHHHHHHHHHCCCEEEEE
Confidence 367788999999999999999987652 112233443443333211 118899999999999999999988
Q ss_pred cCCCCchhh
Q 007722 270 IDSPGHTGS 278 (591)
Q Consensus 270 ID~PGH~~a 278 (591)
| +|.|+..
T Consensus 89 i-V~NH~~~ 96 (879)
T PRK14511 89 I-VPNHMAV 96 (879)
T ss_pred e-ccccccC
Confidence 8 7888864
No 42
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=85.11 E-value=4.4 Score=46.69 Aligned_cols=128 Identities=11% Similarity=0.053 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHCCCcEEEEEecCC------------CCCcccCCCCCCcccCCCCCCC---CCCCHHHHHHHHHHHHhc
Q 007722 198 GDIMRTIYAMSANKMNVFHWHITDS------------PSFPLNLPSEPGLAAKGSYGDD---MQYSPDDVKKIVEFGLDH 262 (591)
Q Consensus 198 ~~lk~~Id~ma~~KlN~lhlHltDd------------~~frle~~~~P~Lt~~ga~~~~---~~YT~~ei~eiv~yA~~r 262 (591)
.-+...||.+..+++|.++|-..-+ ..|.+....|=.. .+.|+.+ +.-+.+|+|+||+-|.++
T Consensus 164 ~g~~~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~--~~~y~~~p~~~~~~~~efk~lV~~~H~~ 241 (605)
T TIGR02104 164 NGVSTGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVP--EGSYSTNPYDPATRIRELKQMIQALHEN 241 (605)
T ss_pred ccchhHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCc--ChhhhcCCCccchHHHHHHHHHHHHHHC
Confidence 3456779999999999999854311 1233332222100 1112110 011258999999999999
Q ss_pred CCEEEEccCCCCchhhH-----HHhCchhhhhcccccCcCCCCCCcccccCCCCCcCCCCChhHHHHHHHHHHHHHHhC
Q 007722 263 GVRVIPEIDSPGHTGSW-----AEAYPEIVTCANMFWWPAESKGEDKLAAEPGTGQLNPLNPKTYQVFKNVISDVVKMF 336 (591)
Q Consensus 263 gI~VIPEID~PGH~~a~-----~~~~pel~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~ll~Ev~~lF 336 (591)
||+||-.+ ++.|+..- ....|+.... .+ .++.........+.++-.+|++.+++.+.+.-.++-|
T Consensus 242 Gi~VilDv-V~NH~~~~~~~~f~~~~~~~~~~------~~--~~g~~~~~~g~~~~~~~~~~~v~~~i~~~~~~W~~e~ 311 (605)
T TIGR02104 242 GIRVIMDV-VYNHTYSREESPFEKTVPGYYYR------YN--EDGTLSNGTGVGNDTASEREMMRKFIVDSVLYWVKEY 311 (605)
T ss_pred CCEEEEEE-EcCCccCCCCCcccCCCCCeeEE------EC--CCCCccCCCcccCCcccCCHHHHHHHHHHHHHHHHHc
Confidence 99999888 67888521 1111211000 00 0000000011123577788999999998887777644
No 43
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=85.00 E-value=3.8 Score=44.63 Aligned_cols=129 Identities=15% Similarity=0.185 Sum_probs=77.0
Q ss_pred CChHHHHHHHHHHHHCCCcEEEEEecCCCCCcccCCCCCCcccCCCCCCC-CCCCHHHHHHHHHHHHhcCCEE----EEc
Q 007722 195 YGVGDIMRTIYAMSANKMNVFHWHITDSPSFPLNLPSEPGLAAKGSYGDD-MQYSPDDVKKIVEFGLDHGVRV----IPE 269 (591)
Q Consensus 195 ~~~~~lk~~Id~ma~~KlN~lhlHltDd~~frle~~~~P~Lt~~ga~~~~-~~YT~~ei~eiv~yA~~rgI~V----IPE 269 (591)
++.+.|++++|.++.++++.|.+ |.||--. ........|-|.++ ..+. .-++.|+++.+++|+.. -||
T Consensus 55 ~~e~~i~~~a~~~~~~G~e~fvi----DDGW~~~--r~~d~~~~GdW~~~~~kFP-~Gl~~l~~~i~~~Gmk~GlW~ePe 127 (394)
T PF02065_consen 55 ITEEKILELADAAAELGYEYFVI----DDGWFGG--RDDDNAGLGDWEPDPKKFP-NGLKPLADYIHSLGMKFGLWFEPE 127 (394)
T ss_dssp --HHHHHHHHHHHHHHT-SEEEE-----SSSBCT--ESTTTSTTSBECBBTTTST-THHHHHHHHHHHTT-EEEEEEETT
T ss_pred CCHHHHHHHHHHHHHhCCEEEEE----cCccccc--cCCCcccCCceeEChhhhC-CcHHHHHHHHHHCCCeEEEEeccc
Confidence 56799999999999999998875 3477321 11122334555432 2332 35999999999998774 555
Q ss_pred cCCCCchhhHHHhCchhhhhcccccCcCCCCCCcccccCCCCCcCCCCChhHHHHHHHHHHHHHHhCCCCcee
Q 007722 270 IDSPGHTGSWAEAYPEIVTCANMFWWPAESKGEDKLAAEPGTGQLNPLNPKTYQVFKNVISDVVKMFPEPFFH 342 (591)
Q Consensus 270 ID~PGH~~a~~~~~pel~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~ll~Ev~~lF~~~~iH 342 (591)
+=.|+ ..+.+.||+.....+.. . .........||+++|++.+++.+.++.+..-..-.||=
T Consensus 128 ~v~~~--S~l~~~hPdw~l~~~~~-----~-----~~~~r~~~vLD~~~pev~~~l~~~i~~ll~~~gidYiK 188 (394)
T PF02065_consen 128 MVSPD--SDLYREHPDWVLRDPGR-----P-----PTLGRNQYVLDLSNPEVRDYLFEVIDRLLREWGIDYIK 188 (394)
T ss_dssp EEESS--SCHCCSSBGGBTCCTTS-----E------ECBTTBEEB-TTSHHHHHHHHHHHHHHHHHTT-SEEE
T ss_pred cccch--hHHHHhCccceeecCCC-----C-----CcCcccceEEcCCCHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 53333 23456688764321110 0 00011223699999999999999999987766655543
No 44
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=84.95 E-value=3.7 Score=48.63 Aligned_cols=77 Identities=9% Similarity=0.165 Sum_probs=55.8
Q ss_pred CCChHHHHHHHHHHHHCCCcEEEEEec----CCCCCcccCCCCCCcccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEEc
Q 007722 194 YYGVGDIMRTIYAMSANKMNVFHWHIT----DSPSFPLNLPSEPGLAAKGSYGDDMQYSPDDVKKIVEFGLDHGVRVIPE 269 (591)
Q Consensus 194 f~~~~~lk~~Id~ma~~KlN~lhlHlt----Dd~~frle~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPE 269 (591)
=++.+.+.+.|+.++.+++|.+++-.- +...+.+.+..|-.+... +=|.+|++++++-|+++||.||-.
T Consensus 12 ~~tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~-------lGt~edf~~Lv~aah~~Gm~vIlD 84 (825)
T TIGR02401 12 GFTFDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPE-------LGGEEGLRRLSEAARARGLGLIVD 84 (825)
T ss_pred CCCHHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCC-------CCCHHHHHHHHHHHHHCCCEEEEE
Confidence 366788999999999999999886542 112233433333333211 118999999999999999999988
Q ss_pred cCCCCchhh
Q 007722 270 IDSPGHTGS 278 (591)
Q Consensus 270 ID~PGH~~a 278 (591)
| +|.|+..
T Consensus 85 i-VpNH~a~ 92 (825)
T TIGR02401 85 I-VPNHMAV 92 (825)
T ss_pred e-ccccccc
Confidence 8 7899864
No 45
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=84.19 E-value=11 Score=43.41 Aligned_cols=133 Identities=13% Similarity=0.135 Sum_probs=78.1
Q ss_pred ceeCCCCC--CCC-hHHHHHHHHHHHHCCCcEEEEEecCCCCCcccCCCCCCcccC-----CCCCCCCCC-CHHHHHHHH
Q 007722 186 LLLDTSRN--YYG-VGDIMRTIYAMSANKMNVFHWHITDSPSFPLNLPSEPGLAAK-----GSYGDDMQY-SPDDVKKIV 256 (591)
Q Consensus 186 ~mlD~aR~--f~~-~~~lk~~Id~ma~~KlN~lhlHltDd~~frle~~~~P~Lt~~-----ga~~~~~~Y-T~~ei~eiv 256 (591)
+|+-+-+. +.+ .+...++|+.++.+++|.+.+-.. ..||.-.+. |-|.+...| |.+|+|.+|
T Consensus 150 lHvGs~~~~~~~~~~e~a~~llpYl~elG~T~IELMPv---------~e~p~~~sWGYq~~g~yAp~sryGtPedfk~fV 220 (628)
T COG0296 150 LHVGSFTPDRFLGYFELAIELLPYLKELGITHIELMPV---------AEHPGDRSWGYQGTGYYAPTSRYGTPEDFKALV 220 (628)
T ss_pred EEeeeccCCCCcCHHHHHHHHhHHHHHhCCCEEEEccc---------ccCCCCCCCCCCcceeccccccCCCHHHHHHHH
Confidence 45544333 344 456688999999999998887532 334432111 112233333 999999999
Q ss_pred HHHHhcCCEEEEccCCCCchhhH---HHhCch-hhhhcccccCcCCCCCCcccccCCCCCcCCCCChhHHHHHHHHHHHH
Q 007722 257 EFGLDHGVRVIPEIDSPGHTGSW---AEAYPE-IVTCANMFWWPAESKGEDKLAAEPGTGQLNPLNPKTYQVFKNVISDV 332 (591)
Q Consensus 257 ~yA~~rgI~VIPEID~PGH~~a~---~~~~pe-l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~ll~Ev 332 (591)
+.|-++||.||-.. +|||...- +..+-. .........---.++|+. ...|-..+++..|+-+-.---
T Consensus 221 D~aH~~GIgViLD~-V~~HF~~d~~~L~~fdg~~~~e~~~~~~~~~~~Wg~--------~i~~~gr~EVR~Fll~nal~W 291 (628)
T COG0296 221 DAAHQAGIGVILDW-VPNHFPPDGNYLARFDGTFLYEHEDPRRGEHTDWGT--------AIFNYGRNEVRNFLLANALYW 291 (628)
T ss_pred HHHHHcCCEEEEEe-cCCcCCCCcchhhhcCCccccccCCcccccCCCccc--------chhccCcHHHHHHHHHHHHHH
Confidence 99999999999877 89998652 221110 000000000000124443 345556899999987766665
Q ss_pred HHhC
Q 007722 333 VKMF 336 (591)
Q Consensus 333 ~~lF 336 (591)
++-|
T Consensus 292 l~~y 295 (628)
T COG0296 292 LEEY 295 (628)
T ss_pred HHHh
Confidence 5554
No 46
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=82.27 E-value=7.8 Score=48.32 Aligned_cols=125 Identities=14% Similarity=0.118 Sum_probs=67.7
Q ss_pred HHHHHHHHCCCcEEEEEecCCCCCcccCCCCCCcccCC---C--C------CCCCCC---CHHHHHHHHHHHHhcCCEEE
Q 007722 202 RTIYAMSANKMNVFHWHITDSPSFPLNLPSEPGLAAKG---S--Y------GDDMQY---SPDDVKKIVEFGLDHGVRVI 267 (591)
Q Consensus 202 ~~Id~ma~~KlN~lhlHltDd~~frle~~~~P~Lt~~g---a--~------~~~~~Y---T~~ei~eiv~yA~~rgI~VI 267 (591)
..|+.+..+++|.+++-..-. + .....+...| . | .++..| |.+|+|++|+-|.++||+||
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~--~----~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VI 264 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFA--S----VDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVI 264 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCccc--c----CcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEE
Confidence 567899999999998854311 1 1111111111 1 2 223445 79999999999999999999
Q ss_pred EccCCCCchhhHHHhCchhhhh---cccccCcC-CCCCCcccccCCCCCcCCCCChhHHHHHHHHHHHHHH
Q 007722 268 PEIDSPGHTGSWAEAYPEIVTC---ANMFWWPA-ESKGEDKLAAEPGTGQLNPLNPKTYQVFKNVISDVVK 334 (591)
Q Consensus 268 PEID~PGH~~a~~~~~pel~~~---~~~~~~~~-~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~ll~Ev~~ 334 (591)
-.+ ++.|+..-...-|.+... ...++..+ +.+. .+....-+.+.+|..+|.+.+++.+.+.-.++
T Consensus 265 LDv-V~NHt~~~~~~~p~~~~~~~d~~~yy~~~~~~~~-~y~~~~G~gn~~n~~~p~v~~~i~d~lr~Wv~ 333 (1221)
T PRK14510 265 LDV-VFNHTGESNHYGPTLSAYGSDNSPYYRLEPGNPK-EYENWWGCGNLPNLERPFILRLPMDVLRSWAK 333 (1221)
T ss_pred EEE-ccccccCCCCCCCcccccCCCCCCceEecCCCCC-cccCCCCCCCccccCCHHHHHHHHHHHHHHHH
Confidence 887 778886432211222110 00010000 0000 00000112245677789998888777766555
No 47
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=81.00 E-value=20 Score=44.10 Aligned_cols=128 Identities=13% Similarity=0.159 Sum_probs=70.9
Q ss_pred hHHHHHHHHHHHHCCCcEEEEEecCCCC----------------------CcccCCCCCCcccCCCCCCC---CCCCHHH
Q 007722 197 VGDIMRTIYAMSANKMNVFHWHITDSPS----------------------FPLNLPSEPGLAAKGSYGDD---MQYSPDD 251 (591)
Q Consensus 197 ~~~lk~~Id~ma~~KlN~lhlHltDd~~----------------------frle~~~~P~Lt~~ga~~~~---~~YT~~e 251 (591)
..-|.+-||.+..+++|.+||-..=+.+ |.+....|=. ..+.|+.+ +.-+.+|
T Consensus 479 f~gl~ekLdYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~~~~~~~~~ynWGYdp~~yfa--pe~~Ygtdp~dp~~ri~E 556 (1111)
T TIGR02102 479 FAAFVEKLDYLQDLGVTHIQLLPVLSYFFVNEFKNKERMLDYASSNTNYNWGYDPQNYFA--LSGMYSEDPKDPELRIAE 556 (1111)
T ss_pred HHHHHHhHHHHHHcCCCEEEEcCccccccccccccccccccccccccccccCCCcCcCcc--cccccccCCcCccccHHH
Confidence 4455556899999999999987652111 2221111100 01222210 1112489
Q ss_pred HHHHHHHHHhcCCEEEEccCCCCchhhH---HHhCchhhhhcccccCcCCCCCCcccccCCCCCcCCCCChhHHHHHHHH
Q 007722 252 VKKIVEFGLDHGVRVIPEIDSPGHTGSW---AEAYPEIVTCANMFWWPAESKGEDKLAAEPGTGQLNPLNPKTYQVFKNV 328 (591)
Q Consensus 252 i~eiv~yA~~rgI~VIPEID~PGH~~a~---~~~~pel~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~l 328 (591)
+|+||+-|.++||+||-.+ ++.|+... ....|.... ..+. .+. .....+.+.++..++.+.+++.+.
T Consensus 557 fK~LV~alH~~GI~VILDV-VyNHt~~~~~f~~~~p~Yy~------~~~~--~G~-~~~~~~g~~l~~e~~~vrk~iiDs 626 (1111)
T TIGR02102 557 FKNLINEIHKRGMGVILDV-VYNHTAKVYIFEDLEPNYYH------FMDA--DGT-PRTSFGGGRLGTTHEMSRRILVDS 626 (1111)
T ss_pred HHHHHHHHHHCCCEEEEec-ccccccccccccccCCCceE------eeCC--CCC-cccccCCCCCCcCCHHHHHHHHHH
Confidence 9999999999999999887 77898542 111222110 0000 000 000112345777788888888887
Q ss_pred HHHHHHhC
Q 007722 329 ISDVVKMF 336 (591)
Q Consensus 329 l~Ev~~lF 336 (591)
+.-.++-|
T Consensus 627 l~yWv~ey 634 (1111)
T TIGR02102 627 IKYLVDEF 634 (1111)
T ss_pred HHHHHHhc
Confidence 77776544
No 48
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=79.65 E-value=12 Score=39.21 Aligned_cols=138 Identities=17% Similarity=0.243 Sum_probs=77.2
Q ss_pred CCCCcccceeCCCCCCCChHHHHHHHHHHHHCCCcEEEEEecCCCCCcccCCCCCCcccCCCCC-CCCCCCHHHHHHHHH
Q 007722 179 PIFPHRGLLLDTSRNYYGVGDIMRTIYAMSANKMNVFHWHITDSPSFPLNLPSEPGLAAKGSYG-DDMQYSPDDVKKIVE 257 (591)
Q Consensus 179 P~f~~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lhlHltDd~~frle~~~~P~Lt~~ga~~-~~~~YT~~ei~eiv~ 257 (591)
|++.+ |++.--- .+.+-+.++++++.+...++..=.+.+.++ |- ..+- .+.|. +...| -+.+++++
T Consensus 7 P~wa~-G~~~~~~-~y~~~~~v~~~~~~~~~~~iP~d~~~lD~~--w~---~~~~----~~~f~~d~~~F--Pd~~~~i~ 73 (308)
T cd06593 7 PAWSF-GLWLSRS-FYYDEEEVNEFADGMRERNLPCDVIHLDCF--WM---KEFQ----WCDFEFDPDRF--PDPEGMLS 73 (308)
T ss_pred chHHH-HHHHHcc-cCCCHHHHHHHHHHHHHcCCCeeEEEEecc--cc---cCCc----ceeeEECcccC--CCHHHHHH
Confidence 45555 6654332 357889999999999999988777666543 31 1110 01110 01123 25789999
Q ss_pred HHHhcCCEEEEccCCCCchhhHHHhCchhhhhcccccC--cCCCCCCcccccCCCCCcCCCCChhHHHHHHHHHHHHHH
Q 007722 258 FGLDHGVRVIPEIDSPGHTGSWAEAYPEIVTCANMFWW--PAESKGEDKLAAEPGTGQLNPLNPKTYQVFKNVISDVVK 334 (591)
Q Consensus 258 yA~~rgI~VIPEID~PGH~~a~~~~~pel~~~~~~~~~--~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~ll~Ev~~ 334 (591)
..+++|++++.-++ |. ...-...|.+... ..+.+ ++++..... .-......+|.+||++.++..+.++++.+
T Consensus 74 ~l~~~G~~~~~~~~-P~-i~~~~~~~~e~~~--~g~~v~~~~g~~~~~~-~w~g~~~~~Dftnp~a~~w~~~~~~~~~~ 147 (308)
T cd06593 74 RLKEKGFKVCLWIN-PY-IAQKSPLFKEAAE--KGYLVKKPDGSVWQWD-LWQPGMGIIDFTNPDACKWYKDKLKPLLD 147 (308)
T ss_pred HHHHCCCeEEEEec-CC-CCCCchhHHHHHH--CCeEEECCCCCeeeec-ccCCCcccccCCCHHHHHHHHHHHHHHHH
Confidence 99999999998775 42 1100001111110 00000 011100000 00112356899999999999999998876
No 49
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=79.11 E-value=6.5 Score=44.65 Aligned_cols=75 Identities=13% Similarity=0.090 Sum_probs=51.2
Q ss_pred ChHHHHHHHHHHHHCCCcEEEEEecCC---CCCcccCCCCCCcccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEEccCC
Q 007722 196 GVGDIMRTIYAMSANKMNVFHWHITDS---PSFPLNLPSEPGLAAKGSYGDDMQYSPDDVKKIVEFGLDHGVRVIPEIDS 272 (591)
Q Consensus 196 ~~~~lk~~Id~ma~~KlN~lhlHltDd---~~frle~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPEID~ 272 (591)
...-|.+-||.++.+++|.+++-.-=. ..+.+....|=.+.. .+=|.+|+++||+-|.++||+||-.+ +
T Consensus 26 dl~gi~~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd~-------~~Gt~~df~~Lv~~ah~~Gi~vilD~-V 97 (539)
T TIGR02456 26 DFPGLTSKLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAILP-------EFGTIDDFKDFVDEAHARGMRVIIDL-V 97 (539)
T ss_pred CHHHHHHhHHHHHHCCCCEEEECCCcCCCCCCCCCCcccccccCh-------hhCCHHHHHHHHHHHHHCCCEEEEEe-c
Confidence 367777889999999999999764311 012222222211111 11188999999999999999999887 7
Q ss_pred CCchhh
Q 007722 273 PGHTGS 278 (591)
Q Consensus 273 PGH~~a 278 (591)
+.|+..
T Consensus 98 ~NH~s~ 103 (539)
T TIGR02456 98 LNHTSD 103 (539)
T ss_pred cCcCCC
Confidence 888853
No 50
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=78.28 E-value=7.5 Score=43.42 Aligned_cols=78 Identities=8% Similarity=0.139 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHCCCcEEEEEec-CCC----CCcccCCCCCCccc---CCCCCCCCCCCHHHHHHHHHHHHhcCCEEEEc
Q 007722 198 GDIMRTIYAMSANKMNVFHWHIT-DSP----SFPLNLPSEPGLAA---KGSYGDDMQYSPDDVKKIVEFGLDHGVRVIPE 269 (591)
Q Consensus 198 ~~lk~~Id~ma~~KlN~lhlHlt-Dd~----~frle~~~~P~Lt~---~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPE 269 (591)
..|.+-+|.++.+++|.+.+-.- .+. .+.+....|=.|.+ .|.- ...+=|.+|+++||+-|.+|||.||-.
T Consensus 22 ~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~i-d~~fGt~~dl~~Li~~~H~~Gi~vi~D 100 (479)
T PRK09441 22 NRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTV-RTKYGTKEELLNAIDALHENGIKVYAD 100 (479)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCc-CcCcCCHHHHHHHHHHHHHCCCEEEEE
Confidence 45777789999999999987542 111 12222222211100 0000 001119999999999999999999988
Q ss_pred cCCCCchh
Q 007722 270 IDSPGHTG 277 (591)
Q Consensus 270 ID~PGH~~ 277 (591)
+ ++.|+.
T Consensus 101 ~-V~NH~~ 107 (479)
T PRK09441 101 V-VLNHKA 107 (479)
T ss_pred E-Cccccc
Confidence 8 788986
No 51
>PRK10785 maltodextrin glucosidase; Provisional
Probab=77.54 E-value=8 Score=44.57 Aligned_cols=79 Identities=10% Similarity=0.131 Sum_probs=54.6
Q ss_pred CCCCC--hHHHHHHHHHHHHCCCcEEEEEecC-C-CCCcccCCCCCCcccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEE
Q 007722 192 RNYYG--VGDIMRTIYAMSANKMNVFHWHITD-S-PSFPLNLPSEPGLAAKGSYGDDMQYSPDDVKKIVEFGLDHGVRVI 267 (591)
Q Consensus 192 R~f~~--~~~lk~~Id~ma~~KlN~lhlHltD-d-~~frle~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VI 267 (591)
+.|+. +.-|.+-||.++.+++|.+++-.-= . ..+++....|=.+.. .+=|.+|+++||+-|.+|||+||
T Consensus 171 ~~f~GGDl~GI~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp-------~~Gt~~df~~Lv~~aH~rGikVi 243 (598)
T PRK10785 171 STFYGGDLDGISEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDP-------QLGGDAALLRLRHATQQRGMRLV 243 (598)
T ss_pred ccccCcCHHHHHHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCc-------ccCCHHHHHHHHHHHHHCCCEEE
Confidence 45554 7888888999999999999986521 1 112222222211111 11288999999999999999999
Q ss_pred EccCCCCchhh
Q 007722 268 PEIDSPGHTGS 278 (591)
Q Consensus 268 PEID~PGH~~a 278 (591)
-.+ ++.|++.
T Consensus 244 lD~-V~NH~~~ 253 (598)
T PRK10785 244 LDG-VFNHTGD 253 (598)
T ss_pred EEE-CCCcCCC
Confidence 888 6788864
No 52
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=73.92 E-value=16 Score=38.48 Aligned_cols=141 Identities=18% Similarity=0.189 Sum_probs=75.7
Q ss_pred CCCCcccceeCCCCCCCChHHHHHHHHHHHHCCCcEEEEEecCCCCCcccCCCC-C--CcccCCCCCCCCCCCHHHHHHH
Q 007722 179 PIFPHRGLLLDTSRNYYGVGDIMRTIYAMSANKMNVFHWHITDSPSFPLNLPSE-P--GLAAKGSYGDDMQYSPDDVKKI 255 (591)
Q Consensus 179 P~f~~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lhlHltDd~~frle~~~~-P--~Lt~~ga~~~~~~YT~~ei~ei 255 (591)
|++.+.+.+ +|.+.+-+.++++++.|..+++-.=.++|.|.....-...++ . .. .|.+ ..| -|.+++
T Consensus 7 P~wa~G~~~---~~~~~s~~~v~~~~~~~~~~~iP~d~i~lddw~~~~~~~~g~~~~~~f----~~d~-~~F--Pdp~~m 76 (317)
T cd06594 7 PDWAYGGAI---LGLQGGTDKVLEALEKARAAGVKVAGLWLQDWTGRRETSFGDRLWWNW----EWDP-ERY--PGLDEL 76 (317)
T ss_pred chhhhCcEE---eeeeCCHHHHHHHHHHHHHcCCCeeEEEEccccCcccccccceeeeee----EECh-hhC--CCHHHH
Confidence 555555554 354459999999999999998876555664322110000000 0 00 0111 122 368899
Q ss_pred HHHHHhcCCEEEEccCCCCchhhHHHhCchhhhhcccccCc--CCCCCCcccccCCCCCcCCCCChhHHHHHHHHHHHHH
Q 007722 256 VEFGLDHGVRVIPEIDSPGHTGSWAEAYPEIVTCANMFWWP--AESKGEDKLAAEPGTGQLNPLNPKTYQVFKNVISDVV 333 (591)
Q Consensus 256 v~yA~~rgI~VIPEID~PGH~~a~~~~~pel~~~~~~~~~~--~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~ll~Ev~ 333 (591)
|+.-+++|+.||+-|+ |+=...-...|.+... ..+... +++++.... -......+|.+||++.+...+.++++.
T Consensus 77 i~~Lh~~G~~~~~~i~-P~v~~~~~~~y~~~~~--~g~~vk~~~g~~~~~~~-w~g~~~~~Dftnp~a~~ww~~~~~~~~ 152 (317)
T cd06594 77 IEELKARGIRVLTYIN-PYLADDGPLYYEEAKD--AGYLVKDADGSPYLVDF-GEFDCGVLDLTNPAARDWFKQVIKEML 152 (317)
T ss_pred HHHHHHCCCEEEEEec-CceecCCchhHHHHHH--CCeEEECCCCCeeeecc-CCCCceeeecCCHHHHHHHHHHHHHHh
Confidence 9999999999999886 5432110000122211 011111 111110000 001235689999999999988888863
No 53
>PLN02877 alpha-amylase/limit dextrinase
Probab=72.75 E-value=46 Score=40.41 Aligned_cols=29 Identities=24% Similarity=0.261 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHhcCCEEEEccCCCCchhh
Q 007722 249 PDDVKKIVEFGLDHGVRVIPEIDSPGHTGS 278 (591)
Q Consensus 249 ~~ei~eiv~yA~~rgI~VIPEID~PGH~~a 278 (591)
..|+|++|+-+.++||+||-.+ ++-|+..
T Consensus 465 I~efk~mV~~lH~~GI~VImDV-VyNHt~~ 493 (970)
T PLN02877 465 IIEFRKMVQALNRIGLRVVLDV-VYNHLHS 493 (970)
T ss_pred HHHHHHHHHHHHHCCCEEEEEE-CCccccC
Confidence 4689999999999999999887 7889853
No 54
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=72.38 E-value=7.8 Score=42.57 Aligned_cols=23 Identities=35% Similarity=0.421 Sum_probs=21.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEE
Q 007722 245 MQYSPDDVKKIVEFGLDHGVRVI 267 (591)
Q Consensus 245 ~~YT~~ei~eiv~yA~~rgI~VI 267 (591)
..|+.+++++|++.|+++||-||
T Consensus 205 ~v~~~~~l~~i~~~a~~~~i~ii 227 (430)
T PLN00145 205 SVYSYEHLAKIAETARKLGILVI 227 (430)
T ss_pred CCCCHHHHHHHHHHHHHcCCEEE
Confidence 46899999999999999999887
No 55
>PLN00196 alpha-amylase; Provisional
Probab=72.20 E-value=15 Score=40.66 Aligned_cols=73 Identities=15% Similarity=0.142 Sum_probs=49.8
Q ss_pred hHHHHHHHHHHHHCCCcEEEEEec----CCCCCcccCCCCCCcccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEEccCC
Q 007722 197 VGDIMRTIYAMSANKMNVFHWHIT----DSPSFPLNLPSEPGLAAKGSYGDDMQYSPDDVKKIVEFGLDHGVRVIPEIDS 272 (591)
Q Consensus 197 ~~~lk~~Id~ma~~KlN~lhlHlt----Dd~~frle~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPEID~ 272 (591)
...|.+-++.++.++++.+.+-.- .++|+ .... +-..+. ..+=|++|+++||+-|.++||.||-.+ +
T Consensus 43 ~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY--~~~D---~y~ld~---~~fGt~~elk~Lv~~aH~~GIkVilDv-V 113 (428)
T PLN00196 43 YNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGY--MPGR---LYDLDA---SKYGNEAQLKSLIEAFHGKGVQVIADI-V 113 (428)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCC--Cccc---cCCCCc---ccCCCHHHHHHHHHHHHHCCCEEEEEE-C
Confidence 456888899999999999987642 11222 0000 111110 012299999999999999999999888 7
Q ss_pred CCchhh
Q 007722 273 PGHTGS 278 (591)
Q Consensus 273 PGH~~a 278 (591)
+.|+.+
T Consensus 114 ~NH~~~ 119 (428)
T PLN00196 114 INHRTA 119 (428)
T ss_pred ccCccc
Confidence 889864
No 56
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=70.09 E-value=15 Score=46.92 Aligned_cols=76 Identities=11% Similarity=0.116 Sum_probs=54.0
Q ss_pred CCChHHHHHHHHHHHHCCCcEEEEEecCC----CCCcccCCCCCCcccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEEc
Q 007722 194 YYGVGDIMRTIYAMSANKMNVFHWHITDS----PSFPLNLPSEPGLAAKGSYGDDMQYSPDDVKKIVEFGLDHGVRVIPE 269 (591)
Q Consensus 194 f~~~~~lk~~Id~ma~~KlN~lhlHltDd----~~frle~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPE 269 (591)
=++.+.+.+.|+.++.+++|.+.+-.-=. ..+.+.+..|-.+.. .+=|.++++.|++-|+++||.||-.
T Consensus 754 ~~tf~~~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp-------~lG~~edf~~Lv~~ah~~Gi~vilD 826 (1693)
T PRK14507 754 DFTFADAEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINP-------EIGGEEGFERFCAALKAHGLGQLLD 826 (1693)
T ss_pred CCCHHHHHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCc-------ccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 46789999999999999999887643211 112222222222211 1128999999999999999999988
Q ss_pred cCCCCchh
Q 007722 270 IDSPGHTG 277 (591)
Q Consensus 270 ID~PGH~~ 277 (591)
| +|.|+.
T Consensus 827 i-V~NH~~ 833 (1693)
T PRK14507 827 I-VPNHMG 833 (1693)
T ss_pred e-cccccC
Confidence 8 789996
No 57
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=69.73 E-value=16 Score=40.15 Aligned_cols=141 Identities=18% Similarity=0.252 Sum_probs=76.1
Q ss_pred CCCCcccceeCCCCC-CCChHHHHHHHHHHHHCCCcEEEEEecCCCCCcccCCCCCCcccCCCCCCCCCCCHHHHHHHHH
Q 007722 179 PIFPHRGLLLDTSRN-YYGVGDIMRTIYAMSANKMNVFHWHITDSPSFPLNLPSEPGLAAKGSYGDDMQYSPDDVKKIVE 257 (591)
Q Consensus 179 P~f~~RG~mlD~aR~-f~~~~~lk~~Id~ma~~KlN~lhlHltDd~~frle~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~ 257 (591)
|++.+ |+++ +|. +.+.+.++++|+.|...++-.=.+++.++ |- ..+..++ |. ...+ .+.+++++
T Consensus 26 P~wal-G~~~--~~~~~~~~~~v~~~i~~~~~~~iP~d~~~iD~~--~~---~~~~~f~----~d-~~~F--Pd~~~~~~ 90 (441)
T PF01055_consen 26 PRWAL-GFWQ--SRWGYYNQDEVREVIDRYRSNGIPLDVIWIDDD--YQ---DGYGDFT----WD-PERF--PDPKQMID 90 (441)
T ss_dssp -GGGG-SEEE--EESTBTSHHHHHHHHHHHHHTT--EEEEEE-GG--GS---BTTBTT-----B--TTTT--TTHHHHHH
T ss_pred chhhh-ceEe--ecCcCCCHHHHHHHHHHHHHcCCCccceecccc--cc---ccccccc----cc-cccc--cchHHHHH
Confidence 45666 8888 443 45789999999999999999777666554 21 1111111 11 1123 38899999
Q ss_pred HHHhcCCEEEEccCCCCchhhH-HHhCchhhhhcccccCc--CCCCCCcccccCC-CCCcCCCCChhHHHHHHHHHHHHH
Q 007722 258 FGLDHGVRVIPEIDSPGHTGSW-AEAYPEIVTCANMFWWP--AESKGEDKLAAEP-GTGQLNPLNPKTYQVFKNVISDVV 333 (591)
Q Consensus 258 yA~~rgI~VIPEID~PGH~~a~-~~~~pel~~~~~~~~~~--~~~~~~~~~~~~~-~~~~L~~~~~~t~~fl~~ll~Ev~ 333 (591)
..+++||++++-++--=+..+- ...+.+... ..+.+. +++.+... ..+ ....+|.++|++.++..+.++++.
T Consensus 91 ~l~~~G~~~~~~~~P~v~~~~~~~~~~~~~~~--~~~~v~~~~g~~~~~~--~w~g~~~~~Dftnp~a~~w~~~~~~~~~ 166 (441)
T PF01055_consen 91 ELHDQGIKVVLWVHPFVSNDSPDYENYDEAKE--KGYLVKNPDGSPYIGR--VWPGKGGFIDFTNPEARDWWKEQLKELL 166 (441)
T ss_dssp HHHHTT-EEEEEEESEEETTTTB-HHHHHHHH--TT-BEBCTTSSB-EEE--ETTEEEEEB-TTSHHHHHHHHHHHHHHH
T ss_pred hHhhCCcEEEEEeecccCCCCCcchhhhhHhh--cCceeecccCCccccc--ccCCcccccCCCChhHHHHHHHHHHHHH
Confidence 9999999999876432111111 001111110 011111 11111000 011 135799999999999999999998
Q ss_pred HhCCC
Q 007722 334 KMFPE 338 (591)
Q Consensus 334 ~lF~~ 338 (591)
+.+.-
T Consensus 167 ~~~Gv 171 (441)
T PF01055_consen 167 DDYGV 171 (441)
T ss_dssp TTST-
T ss_pred hccCC
Confidence 87543
No 58
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=69.23 E-value=29 Score=36.28 Aligned_cols=124 Identities=15% Similarity=0.175 Sum_probs=71.2
Q ss_pred CCCChHHHHHHHHHHHHCCCcEEEEEecCCCCCcccCCCCCCcccCCCCCC-CCCCCHHHHHHHHHHHHhcCCEEEEccC
Q 007722 193 NYYGVGDIMRTIYAMSANKMNVFHWHITDSPSFPLNLPSEPGLAAKGSYGD-DMQYSPDDVKKIVEFGLDHGVRVIPEID 271 (591)
Q Consensus 193 ~f~~~~~lk~~Id~ma~~KlN~lhlHltDd~~frle~~~~P~Lt~~ga~~~-~~~YT~~ei~eiv~yA~~rgI~VIPEID 271 (591)
..++-+.|+++++.|..+++..=.+++.|+ |- .. .|.|.- ...|. +.+++++.-+++|+++++-|+
T Consensus 25 ~~~s~~~v~~~~~~~~~~~iP~d~i~iD~~--w~---~~------~g~f~~d~~~FP--dp~~mi~~l~~~G~k~~l~i~ 91 (303)
T cd06592 25 ADINQETVLNYAQEIIDNGFPNGQIEIDDN--WE---TC------YGDFDFDPTKFP--DPKGMIDQLHDLGFRVTLWVH 91 (303)
T ss_pred cCcCHHHHHHHHHHHHHcCCCCCeEEeCCC--cc---cc------CCccccChhhCC--CHHHHHHHHHHCCCeEEEEEC
Confidence 357789999999999999987555555443 31 11 122211 12342 589999999999999998776
Q ss_pred CCCchhhHHHhCchhhhhcccccCcCCC---CCCcccccCCCCCcCCCCChhHHHHHHHHHHHHHH
Q 007722 272 SPGHTGSWAEAYPEIVTCANMFWWPAES---KGEDKLAAEPGTGQLNPLNPKTYQVFKNVISDVVK 334 (591)
Q Consensus 272 ~PGH~~a~~~~~pel~~~~~~~~~~~~~---~~~~~~~~~~~~~~L~~~~~~t~~fl~~ll~Ev~~ 334 (591)
|.-... ...|.+... ..+.+.+.. ....+.. ......+|.+||++.++..+.++++..
T Consensus 92 -P~i~~~-s~~~~e~~~--~g~~vk~~~g~~~~~~~~w-~g~~~~~Dftnp~a~~w~~~~~~~~~~ 152 (303)
T cd06592 92 -PFINTD-SENFREAVE--KGYLVSEPSGDIPALTRWW-NGTAAVLDFTNPEAVDWFLSRLKSLQE 152 (303)
T ss_pred -CeeCCC-CHHHHhhhh--CCeEEECCCCCCCccccee-cCCcceEeCCCHHHHHHHHHHHHHHHH
Confidence 422210 011222111 001011100 0000000 012357999999999999999999883
No 59
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=68.88 E-value=7.8 Score=41.63 Aligned_cols=32 Identities=41% Similarity=0.561 Sum_probs=27.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCEEEEccCCCCch
Q 007722 244 DMQYSPDDVKKIVEFGLDHGVRVIPEIDSPGHT 276 (591)
Q Consensus 244 ~~~YT~~ei~eiv~yA~~rgI~VIPEID~PGH~ 276 (591)
+.+||++-+++|.+.|+++||-||-. ++-||+
T Consensus 213 GnVys~~HL~kiae~A~klgi~vIaD-EVY~~~ 244 (447)
T KOG0259|consen 213 GNVYSEDHLKKIAETAKKLGIMVIAD-EVYGHT 244 (447)
T ss_pred cccccHHHHHHHHHHHHHhCCeEEeh-hhccee
Confidence 46899999999999999999999954 456776
No 60
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=68.64 E-value=13 Score=40.37 Aligned_cols=24 Identities=33% Similarity=0.632 Sum_probs=22.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEEE
Q 007722 245 MQYSPDDVKKIVEFGLDHGVRVIP 268 (591)
Q Consensus 245 ~~YT~~ei~eiv~yA~~rgI~VIP 268 (591)
..||++++++|+++|++++|-||-
T Consensus 178 av~~~~~l~~i~~~a~~~~i~ii~ 201 (393)
T COG0436 178 AVYSKEELKAIVELAREHDIIIIS 201 (393)
T ss_pred cCCCHHHHHHHHHHHHHcCeEEEE
Confidence 379999999999999999999984
No 61
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=68.45 E-value=29 Score=36.55 Aligned_cols=137 Identities=12% Similarity=0.111 Sum_probs=70.8
Q ss_pred CCCCcccceeCCCCCCCChHHHHHHHHHHHHCCCcEEEEEecCCCCCcccCCCCCCcccCCCCCCCCCCCHHHHHHHHHH
Q 007722 179 PIFPHRGLLLDTSRNYYGVGDIMRTIYAMSANKMNVFHWHITDSPSFPLNLPSEPGLAAKGSYGDDMQYSPDDVKKIVEF 258 (591)
Q Consensus 179 P~f~~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lhlHltDd~~frle~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~y 258 (591)
|++.+ |++.-- -.+.+.+.++++++.+..+++..=.+++..+ -|. -..+..++ |. ...| -+.+++++.
T Consensus 7 P~wal-G~~~sr-~~y~~~~ev~~~~~~~~~~~iP~d~i~lD~~-~~~--~~~~~~f~----~d-~~~F--Pdp~~mi~~ 74 (319)
T cd06591 7 PKWAY-GFWQSK-ERYKTQEELLDVAKEYRKRGIPLDVIVQDWF-YWP--KQGWGEWK----FD-PERF--PDPKAMVRE 74 (319)
T ss_pred chHHH-HHHHhc-ccCCCHHHHHHHHHHHHHhCCCccEEEEech-hhc--CCCceeEE----EC-hhhC--CCHHHHHHH
Confidence 33443 555422 2456899999999999999888655555322 110 00000111 11 1122 257899999
Q ss_pred HHhcCCEEEEccCCCCchhhHHHhCchhhhhcccccCcCCCCCCcccccCC-CCCcCCCCChhHHHHHHHHHHHH
Q 007722 259 GLDHGVRVIPEIDSPGHTGSWAEAYPEIVTCANMFWWPAESKGEDKLAAEP-GTGQLNPLNPKTYQVFKNVISDV 332 (591)
Q Consensus 259 A~~rgI~VIPEID~PGH~~a~~~~~pel~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~~~~~~t~~fl~~ll~Ev 332 (591)
.+++||+||+-|+ |+=. .-...|.+.... .+.+++. +........+ ....+|.+||++.+...+.+.+.
T Consensus 75 L~~~G~kv~~~i~-P~v~-~~~~~y~e~~~~--g~~v~~~-~g~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~ 144 (319)
T cd06591 75 LHEMNAELMISIW-PTFG-PETENYKEMDEK--GYLIKTD-RGPRVTMQFGGNTRFYDATNPEAREYYWKQLKKN 144 (319)
T ss_pred HHHCCCEEEEEec-CCcC-CCChhHHHHHHC--CEEEEcC-CCCeeeeeCCCCccccCCCCHHHHHHHHHHHHHH
Confidence 9999999998665 5411 000112222110 1111110 0000000011 13579999999999876666553
No 62
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=67.16 E-value=92 Score=37.76 Aligned_cols=117 Identities=9% Similarity=0.086 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHhcCCEEEEccCCCCchhhHH--------HhCchhhhhcccccCcCCCCCCcccccCCCCCcCCCCChhH
Q 007722 250 DDVKKIVEFGLDHGVRVIPEIDSPGHTGSWA--------EAYPEIVTCANMFWWPAESKGEDKLAAEPGTGQLNPLNPKT 321 (591)
Q Consensus 250 ~ei~eiv~yA~~rgI~VIPEID~PGH~~a~~--------~~~pel~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~t 321 (591)
+|+|++|+-|.++||+||-.+ ++-|+..-. +..|.+....+ .+ +. .....+++-++..++.+
T Consensus 404 ~Efk~mV~alH~~Gi~VIlDV-VyNHt~~~g~~~~s~ld~~~P~YY~r~~----~~----G~-~~n~~~~~d~a~e~~~V 473 (898)
T TIGR02103 404 KEFREMVQALNKTGLNVVMDV-VYNHTNASGPNDRSVLDKIVPGYYHRLN----ED----GG-VENSTCCSNTATEHRMM 473 (898)
T ss_pred HHHHHHHHHHHHCCCEEEEEe-ecccccccCccCcccccccCcHhhEeeC----CC----CC-eecCCCCcCCCCCCHHH
Confidence 699999999999999999887 678876421 11122110000 00 00 11112334456778888
Q ss_pred HHHHHHHHHHHHHhCCCCceecCCCCCCCCCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCeEEEeccccc
Q 007722 322 YQVFKNVISDVVKMFPEPFFHAGADEVTPGCWKTDPTIQSFLSNGGSLSQVLEKFVNETFPYIVSLNRTVIYWEDVLL 399 (591)
Q Consensus 322 ~~fl~~ll~Ev~~lF~~~~iHIGgDEv~~~~w~~~p~~~~~m~~~g~~~~l~~~f~~~~~~~l~~~gk~~~~W~d~~~ 399 (591)
.+++.+.+.-.++-|. -|=+..+ -...+-..|++++.+.+++.+...++.+|...
T Consensus 474 rk~iiDsl~~W~~ey~-------VDGFRfD----------------lm~~~~~~f~~~~~~~l~~i~pdi~l~GEgW~ 528 (898)
T TIGR02103 474 AKLIVDSLVVWAKDYK-------VDGFRFD----------------LMGHHPKAQMLAAREAIKALTPEIYFYGEGWD 528 (898)
T ss_pred HHHHHHHHHHHHHHcC-------CCEEEEe----------------chhhCCHHHHHHHHHHHHHhCCCEEEEecCCC
Confidence 8888777776654332 1111110 00112245777777777776666666666543
No 63
>PLN03244 alpha-amylase; Provisional
Probab=65.14 E-value=16 Score=43.15 Aligned_cols=82 Identities=11% Similarity=0.082 Sum_probs=53.0
Q ss_pred CCCHHHHHHHHHHHHhcCCEEEEccCCCCchhhHHHhCc-hhhhhcccccCcCC----CCCCcccccCCCCCcCCCCChh
Q 007722 246 QYSPDDVKKIVEFGLDHGVRVIPEIDSPGHTGSWAEAYP-EIVTCANMFWWPAE----SKGEDKLAAEPGTGQLNPLNPK 320 (591)
Q Consensus 246 ~YT~~ei~eiv~yA~~rgI~VIPEID~PGH~~a~~~~~p-el~~~~~~~~~~~~----~~~~~~~~~~~~~~~L~~~~~~ 320 (591)
+=|.+|+|.+|+-|.++||.||-.+ ++.|+..-..... .+......+.-.+. ..|+ +..+|..+++
T Consensus 437 YGTPeDLK~LVD~aH~~GI~VILDv-V~NH~~~d~~~GL~~fDGt~~~Yf~~~~~g~~~~WG--------s~~fnyg~~E 507 (872)
T PLN03244 437 YGTPDDFKRLVDEAHGLGLLVFLDI-VHSYAAADEMVGLSLFDGSNDCYFHTGKRGHHKHWG--------TRMFKYGDLD 507 (872)
T ss_pred cCCHHHHHHHHHHHHHCCCEEEEEe-cCccCCCccccchhhcCCCccceeccCCCCccCCCC--------CceecCCCHH
Confidence 3489999999999999999999887 6899864110000 00000001110000 1232 2468899999
Q ss_pred HHHHHHHHHHHHHHhC
Q 007722 321 TYQVFKNVISDVVKMF 336 (591)
Q Consensus 321 t~~fl~~ll~Ev~~lF 336 (591)
+..||-+.+.-.++-|
T Consensus 508 Vr~FLLsna~yWleEy 523 (872)
T PLN03244 508 VLHFLISNLNWWITEY 523 (872)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999998888765
No 64
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=64.24 E-value=11 Score=37.87 Aligned_cols=101 Identities=10% Similarity=-0.127 Sum_probs=59.7
Q ss_pred HHHHHHHhcCCCcccccceE--EecCCCCCcccceeCCCCCCCChHHHHHHHHHHHHCCCcEEEEEecCCCCCcccCCCC
Q 007722 155 LETFSQLVWGRPSRVPVGVY--VWDDPIFPHRGLLLDTSRNYYGVGDIMRTIYAMSANKMNVFHWHITDSPSFPLNLPSE 232 (591)
Q Consensus 155 ~~Tl~Ql~~~~~~~~p~~~~--I~D~P~f~~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lhlHltDd~~frle~~~~ 232 (591)
++.+.+++...++.+. ++. ..++ ....||.+++..+..-..+.+++.|+.++..+...+..+. |..-.-...
T Consensus 41 ~~~l~~~l~~~gl~v~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lg~~~i~~~~----g~~~~~~~~ 114 (254)
T TIGR03234 41 AEALKARLAAAGLEQV-LFNLPAGDW-AAGERGIACLPGREEEFREGVALAIAYARALGCPQVNCLA----GKRPAGVSP 114 (254)
T ss_pred HHHHHHHHHHcCCeEE-EEeCCCCcc-ccCCCccccCCccHHHHHHHHHHHHHHHHHhCCCEEEECc----CCCCCCCCH
Confidence 5667777765444333 211 0111 2335666665554432357899999999999999887653 111000000
Q ss_pred CCcccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEEcc
Q 007722 233 PGLAAKGSYGDDMQYSPDDVKKIVEFGLDHGVRVIPEI 270 (591)
Q Consensus 233 P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPEI 270 (591)
.+ .| ....+.++++.+||++.||.|.-|-
T Consensus 115 ~~-----~~----~~~~~~l~~l~~~A~~~gi~l~lE~ 143 (254)
T TIGR03234 115 EE-----AR----ATLVENLRYAADALDRIGLTLLIEP 143 (254)
T ss_pred HH-----HH----HHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 00 00 1134669999999999999999984
No 65
>PLN02187 rooty/superroot1
Probab=64.20 E-value=21 Score=39.65 Aligned_cols=23 Identities=39% Similarity=0.514 Sum_probs=21.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEE
Q 007722 245 MQYSPDDVKKIVEFGLDHGVRVI 267 (591)
Q Consensus 245 ~~YT~~ei~eiv~yA~~rgI~VI 267 (591)
..||.+++++|++.|+++||-||
T Consensus 219 ~v~s~e~l~~i~~~a~~~~i~iI 241 (462)
T PLN02187 219 NVYSHDHLKKVAETARKLGIMVI 241 (462)
T ss_pred CccCHHHHHHHHHHHHHCCCEEE
Confidence 46899999999999999998777
No 66
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=62.48 E-value=21 Score=41.22 Aligned_cols=68 Identities=18% Similarity=0.154 Sum_probs=46.0
Q ss_pred HHHHHHHHHCCCcEEEEEecCCC----CC--------cccCCCCCCcccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEE
Q 007722 201 MRTIYAMSANKMNVFHWHITDSP----SF--------PLNLPSEPGLAAKGSYGDDMQYSPDDVKKIVEFGLDHGVRVIP 268 (591)
Q Consensus 201 k~~Id~ma~~KlN~lhlHltDd~----~f--------rle~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIP 268 (591)
.++-|.+...+++.+|+-..-.. || .+.+..+ .+. ..+=|.+|+++|++-|.+|||.||-
T Consensus 77 ~~~wdyL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d~-~Id-------p~~GT~eDf~~L~~~Ah~~G~~vi~ 148 (688)
T TIGR02455 77 DALWKALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRISF-DID-------PLLGSEEELIQLSRMAAAHNAITID 148 (688)
T ss_pred hHHHHHHHHhCCCEEEeCcceecccccccCCCCCCCCCCCcccC-ccC-------cccCCHHHHHHHHHHHHHCCCEEEE
Confidence 46678888999999997543111 11 1111111 110 1223999999999999999999998
Q ss_pred ccCCCCchh
Q 007722 269 EIDSPGHTG 277 (591)
Q Consensus 269 EID~PGH~~ 277 (591)
++ +|+|++
T Consensus 149 Dl-VpnHTs 156 (688)
T TIGR02455 149 DI-IPAHTG 156 (688)
T ss_pred Ee-CCCCCC
Confidence 87 788985
No 67
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=60.97 E-value=40 Score=35.55 Aligned_cols=141 Identities=13% Similarity=0.117 Sum_probs=75.6
Q ss_pred CCCCcccceeCCCCCCCChHHHHHHHHHHHHCCCcEEEEEecCCCCCccc---CCCCCCcccCCCCCCCCCCCHHHHHHH
Q 007722 179 PIFPHRGLLLDTSRNYYGVGDIMRTIYAMSANKMNVFHWHITDSPSFPLN---LPSEPGLAAKGSYGDDMQYSPDDVKKI 255 (591)
Q Consensus 179 P~f~~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lhlHltDd~~frle---~~~~P~Lt~~ga~~~~~~YT~~ei~ei 255 (591)
|++.+ |++.-. -.+.+-+.+.++|+.+...++-.=.+++.++ |--. -..+-.++ |. ...| -|.+++
T Consensus 7 P~wa~-G~~~s~-~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~--w~~~~~~~~~~~~f~----wd-~~~F--Pdp~~m 75 (317)
T cd06598 7 PRWAL-GNWASR-FGYRNWQEVDDTIKTLREKDFPLDAAILDLY--WFGKDIDKGHMGNLD----WD-RKAF--PDPAGM 75 (317)
T ss_pred chHHH-HHHHhc-CCCCCHHHHHHHHHHHHHhCCCceEEEEech--hhcCcccCCceeeeE----ec-cccC--CCHHHH
Confidence 55665 666433 2456789999999999999987544444322 2100 00011111 11 1233 357889
Q ss_pred HHHHHhcCCEEEEccCCCCchhhHHHhCchhhhhcccccCcCCCCCCcc-cccC-CCCCcCCCCChhHHHHHHHHHHHHH
Q 007722 256 VEFGLDHGVRVIPEIDSPGHTGSWAEAYPEIVTCANMFWWPAESKGEDK-LAAE-PGTGQLNPLNPKTYQVFKNVISDVV 333 (591)
Q Consensus 256 v~yA~~rgI~VIPEID~PGH~~a~~~~~pel~~~~~~~~~~~~~~~~~~-~~~~-~~~~~L~~~~~~t~~fl~~ll~Ev~ 333 (591)
++.-+++||+|++-|+--=.... ..|.|+... + +.+.+..+.... .... .....+|.+||++.++..+.++++.
T Consensus 76 i~~L~~~G~k~~~~v~P~v~~~~--~~y~e~~~~-g-~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~ 151 (317)
T cd06598 76 IADLAKKGVKTIVITEPFVLKNS--KNWGEAVKA-G-ALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHDNYKKLI 151 (317)
T ss_pred HHHHHHcCCcEEEEEcCcccCCc--hhHHHHHhC-C-CEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHHHHHHhh
Confidence 99999999999998862211111 122232211 0 000000000000 0000 1245789999999999999999874
Q ss_pred H
Q 007722 334 K 334 (591)
Q Consensus 334 ~ 334 (591)
+
T Consensus 152 ~ 152 (317)
T cd06598 152 D 152 (317)
T ss_pred h
Confidence 4
No 68
>PRK09276 LL-diaminopimelate aminotransferase; Provisional
Probab=60.35 E-value=30 Score=36.95 Aligned_cols=23 Identities=13% Similarity=0.154 Sum_probs=21.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEE
Q 007722 245 MQYSPDDVKKIVEFGLDHGVRVI 267 (591)
Q Consensus 245 ~~YT~~ei~eiv~yA~~rgI~VI 267 (591)
..||.+++++|++.|+++++-||
T Consensus 181 ~~~~~~~~~~l~~~~~~~~~~ii 203 (385)
T PRK09276 181 AVADLEFFEEVVDFAKKYDIIVC 203 (385)
T ss_pred CCCCHHHHHHHHHHHHHCCcEEE
Confidence 46899999999999999999776
No 69
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=58.94 E-value=24 Score=38.38 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=21.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEE
Q 007722 245 MQYSPDDVKKIVEFGLDHGVRVI 267 (591)
Q Consensus 245 ~~YT~~ei~eiv~yA~~rgI~VI 267 (591)
..||.+++++|++.|+++++-||
T Consensus 185 ~~~s~~~~~~l~~~a~~~~~~ii 207 (409)
T PLN00143 185 SVYSYEHLNKIAETARKLGILVI 207 (409)
T ss_pred CccCHHHHHHHHHHHHHcCCeEE
Confidence 46899999999999999999887
No 70
>PRK06290 aspartate aminotransferase; Provisional
Probab=58.59 E-value=23 Score=38.67 Aligned_cols=23 Identities=13% Similarity=0.322 Sum_probs=20.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEE
Q 007722 245 MQYSPDDVKKIVEFGLDHGVRVI 267 (591)
Q Consensus 245 ~~YT~~ei~eiv~yA~~rgI~VI 267 (591)
..||.+++++|++.|+++++-||
T Consensus 194 ~v~s~e~l~~l~~la~~~~~~iI 216 (410)
T PRK06290 194 AVATKEFYEEVVDFAKENNIIVV 216 (410)
T ss_pred cCCCHHHHHHHHHHHHHcCeEEE
Confidence 47899999999999999999776
No 71
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=58.47 E-value=26 Score=37.68 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=21.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEE
Q 007722 245 MQYSPDDVKKIVEFGLDHGVRVI 267 (591)
Q Consensus 245 ~~YT~~ei~eiv~yA~~rgI~VI 267 (591)
..||.+++++|++.|+++++-||
T Consensus 181 ~~~s~~~~~~l~~~a~~~~~~ii 203 (396)
T PRK09147 181 AVLPLDDWKKLFALSDRYGFVIA 203 (396)
T ss_pred ccCCHHHHHHHHHHHHHcCeEEE
Confidence 46899999999999999999887
No 72
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=58.27 E-value=13 Score=37.95 Aligned_cols=62 Identities=8% Similarity=0.116 Sum_probs=44.2
Q ss_pred CChHHHHHHHHHHHHCCCcEEEEEecCCCCCcccCCCCCCcccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEEcc
Q 007722 195 YGVGDIMRTIYAMSANKMNVFHWHITDSPSFPLNLPSEPGLAAKGSYGDDMQYSPDDVKKIVEFGLDHGVRVIPEI 270 (591)
Q Consensus 195 ~~~~~lk~~Id~ma~~KlN~lhlHltDd~~frle~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPEI 270 (591)
-.++.+++.|+.++..+.+.+-.|.....+ ......| ....+-+++|+++|++.||+|.-|-
T Consensus 82 ~~~~~~~~~i~~A~~lG~~~v~~~~g~~~~----------~~~~~~~----~~~~~~l~~l~~~a~~~gi~l~lEn 143 (279)
T cd00019 82 KSIERLKDEIERCEELGIRLLVFHPGSYLG----------QSKEEGL----KRVIEALNELIDKAETKGVVIALET 143 (279)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEECCCCCCC----------CCHHHHH----HHHHHHHHHHHHhccCCCCEEEEeC
Confidence 347889999999999999988877542110 0000000 1245779999999999999999885
No 73
>PRK09505 malS alpha-amylase; Reviewed
Probab=57.76 E-value=34 Score=40.07 Aligned_cols=80 Identities=16% Similarity=0.256 Sum_probs=49.2
Q ss_pred hHHHHHHHHHHHHCCCcEEEEEec-CC-CCCccc--CCCCCCcccCCCCC------CCCCCCHHHHHHHHHHHHhcCCEE
Q 007722 197 VGDIMRTIYAMSANKMNVFHWHIT-DS-PSFPLN--LPSEPGLAAKGSYG------DDMQYSPDDVKKIVEFGLDHGVRV 266 (591)
Q Consensus 197 ~~~lk~~Id~ma~~KlN~lhlHlt-Dd-~~frle--~~~~P~Lt~~ga~~------~~~~YT~~ei~eiv~yA~~rgI~V 266 (591)
+.-|.+-||.+..+++|.+.+-.- +. .++.-. --.+|.-...|-|. ...+=|.+|+++||+-|.+|||+|
T Consensus 229 l~Gi~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~V 308 (683)
T PRK09505 229 LRGLTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRI 308 (683)
T ss_pred HHHHHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 677888899999999999987432 10 000000 00011001111110 011228899999999999999999
Q ss_pred EEccCCCCchh
Q 007722 267 IPEIDSPGHTG 277 (591)
Q Consensus 267 IPEID~PGH~~ 277 (591)
|-.+ ++.|+.
T Consensus 309 ilD~-V~NH~~ 318 (683)
T PRK09505 309 LFDV-VMNHTG 318 (683)
T ss_pred EEEE-CcCCCc
Confidence 9887 678886
No 74
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=57.48 E-value=18 Score=41.18 Aligned_cols=201 Identities=19% Similarity=0.227 Sum_probs=98.2
Q ss_pred ecCCCCCcccceeCCCCCCCChHHHHHHHHHHHHCCCcEEEEEecCCCCCcccCCCCCCcc--cCCCCC--CCCCCCHHH
Q 007722 176 WDDPIFPHRGLLLDTSRNYYGVGDIMRTIYAMSANKMNVFHWHITDSPSFPLNLPSEPGLA--AKGSYG--DDMQYSPDD 251 (591)
Q Consensus 176 ~D~P~f~~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lhlHltDd~~frle~~~~P~Lt--~~ga~~--~~~~YT~~e 251 (591)
+|+=+||--|++=|..-. .+.+..++.|+.|+.|.+|.+|++ |--||-+.+ +|.-. ....|. .+..-+.+-
T Consensus 97 sdW~~fPRYGfls~f~~~-~~~~~~~~~i~~L~~yHIN~~QFY---DW~~rH~~P-l~~~~~~~~~~w~D~~~r~i~~~~ 171 (559)
T PF13199_consen 97 SDWTRFPRYGFLSDFDKS-KSAEDIEAEIDQLNRYHINGLQFY---DWMYRHHKP-LPGTNGQPDQTWTDWANRQISTST 171 (559)
T ss_dssp SSTTSS--EEEE---GGG-GGHHHHHHHHHHHHHTT--EEEET---S--SBTTB--S-SSS-EEE-TT-TTT--EEEHHH
T ss_pred CCcccCCcceEecCCCCc-CCchhHHHHHHHHHhhCcCeEEEE---eeccccCCc-CCCCCCchhhhhhhhcCCEehHHH
Confidence 488889888998653222 344889999999999999999976 333443221 11110 001221 123457788
Q ss_pred HHHHHHHHHhcCCEEEEccCCCCchhhHHH--hCchhhhhcccccCcCCCCCCc-cccc-CCC-CCcCCCCChhHHHHHH
Q 007722 252 VKKIVEFGLDHGVRVIPEIDSPGHTGSWAE--AYPEIVTCANMFWWPAESKGED-KLAA-EPG-TGQLNPLNPKTYQVFK 326 (591)
Q Consensus 252 i~eiv~yA~~rgI~VIPEID~PGH~~a~~~--~~pel~~~~~~~~~~~~~~~~~-~~~~-~~~-~~~L~~~~~~t~~fl~ 326 (591)
||+.|+.|+++|+..++=.=+-|=..-... ..|+-.. +.-+....+.. .+.. .+. -..+||.|++=-+.|-
T Consensus 172 Vk~yI~~ah~~Gmkam~Ynmiyaa~~~~~~~gv~~eW~l----y~d~~~~~~~~~~l~~~w~s~lyl~dP~N~~WQ~yI~ 247 (559)
T PF13199_consen 172 VKDYINAAHKYGMKAMAYNMIYAANNNYEEDGVSPEWGL----YKDDSHSNQDTYDLPDGWPSDLYLMDPGNPEWQNYII 247 (559)
T ss_dssp HHHHHHHHHHTT-EEEEEEESSEEETT--S--SS-GGBE----EESSSBTSB-EEEETT-E--EEEEB-TT-HHHHHHHH
T ss_pred HHHHHHHHHHcCcceehhHhhhccccCcccccCCchhhh----hhccCCCccceeecCcccccceEEecCCCHHHHHHHH
Confidence 999999999999999977544442222111 1111100 00000000000 0000 000 1358999999888988
Q ss_pred HHHHHHHHhCCCCceec---CCCCCCCCCCCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHhcCCeEEEecccc
Q 007722 327 NVISDVVKMFPEPFFHA---GADEVTPGCWKTDPTIQSFLSNGG-SLSQVLEKFVNETFPYIVSLNRTVIYWEDVL 398 (591)
Q Consensus 327 ~ll~Ev~~lF~~~~iHI---GgDEv~~~~w~~~p~~~~~m~~~g-~~~~l~~~f~~~~~~~l~~~gk~~~~W~d~~ 398 (591)
+=+.++.+.|.-.=||| | +-... ++.+-. .- +..+.|..|++++-+.+ ....++-|.+-
T Consensus 248 ~q~~~~~~~~gFDG~hlDq~G-~~~~~--~d~~G~-------~i~~l~~~y~~Fi~~~K~~~---~~k~lv~N~V~ 310 (559)
T PF13199_consen 248 NQMNKAIQNFGFDGWHLDQLG-NRGTV--YDYDGN-------KIYDLSDGYASFINAMKEAL---PDKYLVFNAVS 310 (559)
T ss_dssp HHHHHHHHHHT--EEEEE-S---EEEE--GGTT----------GGECHHHHHHHHHHHHHHS---TTSEEEEB-GG
T ss_pred HHHHHHHHccCCceEeeeccC-CCCcc--ccCCCC-------CchhhHHHHHHHHHHHHHhC---CCCceeeeccC
Confidence 88888888888766663 4 11111 111100 01 34677888988876554 23346656654
No 75
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=56.47 E-value=13 Score=43.02 Aligned_cols=123 Identities=12% Similarity=0.133 Sum_probs=69.3
Q ss_pred HHHHHHHHHHCCCcEEEEEecCCC-----CCcccCCCCCCcccCCCCCCCCCCCHH------HHHHHHHHHHhcCCEEEE
Q 007722 200 IMRTIYAMSANKMNVFHWHITDSP-----SFPLNLPSEPGLAAKGSYGDDMQYSPD------DVKKIVEFGLDHGVRVIP 268 (591)
Q Consensus 200 lk~~Id~ma~~KlN~lhlHltDd~-----~frle~~~~P~Lt~~ga~~~~~~YT~~------ei~eiv~yA~~rgI~VIP 268 (591)
..+.|..+..+++|.+||-..=.. .|.+....| .+..+.|+ |.+ |+|+||+-|..+||+|+-
T Consensus 257 teKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nF--FapssrYg-----t~~s~~ri~efK~lVd~aHs~GI~VlL 329 (757)
T KOG0470|consen 257 TEKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNF--FAPSSRYG-----TPESPCRINEFKELVDKAHSLGIEVLL 329 (757)
T ss_pred hhhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEe--eccccccc-----CCCcccchHHHHHHHHHHhhCCcEEeh
Confidence 445577788889999998765322 233322211 11122232 666 999999999999999998
Q ss_pred ccCCCCchhhHHHhCchhhh--hcccccCcCCCCCCccccc-CCCCCcCCCCChhHHHHHHHHHHHHHHh
Q 007722 269 EIDSPGHTGSWAEAYPEIVT--CANMFWWPAESKGEDKLAA-EPGTGQLNPLNPKTYQVFKNVISDVVKM 335 (591)
Q Consensus 269 EID~PGH~~a~~~~~pel~~--~~~~~~~~~~~~~~~~~~~-~~~~~~L~~~~~~t~~fl~~ll~Ev~~l 335 (591)
+| +-.|+.+ ....|.-+. ..+..++-.+. +... --+...+|-..+++.+||-+=+.=...-
T Consensus 330 DV-V~sHaa~-n~~d~l~~fdGid~~~Yf~~~~----r~~h~~~~~r~fn~~~~~V~rflL~nLr~WVtE 393 (757)
T KOG0470|consen 330 DV-VHSHAAK-NSKDGLNMFDGIDNSVYFHSGP----RGYHNSWCSRLFNYNHPVVLRFLLSNLRWWVTE 393 (757)
T ss_pred hh-hhhhccc-CcCCcchhccCcCCceEEEeCC----cccccccccccccCCCHHHHHHHHHHHHHHHHh
Confidence 87 5667755 222222111 00000000000 0000 1123568888999999987766655543
No 76
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=54.41 E-value=52 Score=34.87 Aligned_cols=98 Identities=18% Similarity=0.260 Sum_probs=73.8
Q ss_pred cEEEEecChhhhhHHHHHHHHHhcCCCcccccceEEecCCCCCcccceeCCCCCCCChHHHHHHHHHHHHCCCcEEEEEe
Q 007722 140 TANLTAETPWGAMRGLETFSQLVWGRPSRVPVGVYVWDDPIFPHRGLLLDTSRNYYGVGDIMRTIYAMSANKMNVFHWHI 219 (591)
Q Consensus 140 ~i~I~a~~~~G~~~g~~Tl~Ql~~~~~~~~p~~~~I~D~P~f~~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lhlHl 219 (591)
.++|.|...-+++.=+.-|.|-++.- | ++++- ++.-+|.||| +++++.++.+++..+-+-+
T Consensus 162 EaHlDGqGEP~lYP~l~~lVqalk~~----~-~v~vV---SmQTng~~L~-----------~~lv~eLeeAGLdRiNlSv 222 (414)
T COG2100 162 EAHLDGQGEPLLYPHLVDLVQALKEH----K-GVEVV---SMQTNGVLLS-----------KKLVDELEEAGLDRINLSV 222 (414)
T ss_pred EEEecCCCCCccchhHHHHHHHHhcC----C-CceEE---EEeeCceecc-----------HHHHHHHHHhCCceEEeec
Confidence 57899999999999999999988752 3 33332 2567899986 7899999999998887765
Q ss_pred cCCCCCcccCCCCCCcccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEE
Q 007722 220 TDSPSFPLNLPSEPGLAAKGSYGDDMQYSPDDVKKIVEFGLDHGVRVI 267 (591)
Q Consensus 220 tDd~~frle~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VI 267 (591)
. .-.|+++.. -.....|.-+-+.|+++|+.+-||+|+
T Consensus 223 ~---------aLDpk~Ak~--L~G~~dYdv~kvle~aE~i~~a~idvl 259 (414)
T COG2100 223 D---------ALDPKLAKM--LAGRKDYDVKKVLEVAEYIANAGIDVL 259 (414)
T ss_pred c---------cCCHHHHHH--hcCccccCHHHHHHHHHHHHhCCCCEE
Confidence 3 123555421 112247999999999999999999987
No 77
>PRK10658 putative alpha-glucosidase; Provisional
Probab=53.77 E-value=94 Score=36.41 Aligned_cols=141 Identities=16% Similarity=0.231 Sum_probs=76.6
Q ss_pred CCCCcccceeCCCCCC-CChHHHHHHHHHHHHCCCcEEEEEecCCCCCcccCCCCCCcccCCCCCCCCCCCHHHHHHHHH
Q 007722 179 PIFPHRGLLLDTSRNY-YGVGDIMRTIYAMSANKMNVFHWHITDSPSFPLNLPSEPGLAAKGSYGDDMQYSPDDVKKIVE 257 (591)
Q Consensus 179 P~f~~RG~mlD~aR~f-~~~~~lk~~Id~ma~~KlN~lhlHltDd~~frle~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~ 257 (591)
|++.+ |+.+-.+... ++-+++.++++.|...++-.=.+|+..+ |-=+. .+...+ |.+ ..| -|.+++++
T Consensus 264 P~Wal-G~w~s~~~~~~~~e~~v~~~~~~~r~~~iP~d~i~lD~~--w~~~~-~~~~f~----wd~-~~F--Pdp~~mi~ 332 (665)
T PRK10658 264 PAWSF-GLWLTTSFTTNYDEATVNSFIDGMAERDLPLHVFHFDCF--WMKEF-QWCDFE----WDP-RTF--PDPEGMLK 332 (665)
T ss_pred chhhh-heeeecccccCCCHHHHHHHHHHHHHcCCCceEEEEchh--hhcCC-ceeeeE----ECh-hhC--CCHHHHHH
Confidence 55665 7877654322 4678899999999999988555555332 21000 001111 110 122 25678999
Q ss_pred HHHhcCCEEEEccCCCCchhhHHHhCchhhhhcccccC--cCCCCCCcccccCCCCCcCCCCChhHHHHHHHHHHHHHHh
Q 007722 258 FGLDHGVRVIPEIDSPGHTGSWAEAYPEIVTCANMFWW--PAESKGEDKLAAEPGTGQLNPLNPKTYQVFKNVISDVVKM 335 (591)
Q Consensus 258 yA~~rgI~VIPEID~PGH~~a~~~~~pel~~~~~~~~~--~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~ll~Ev~~l 335 (591)
.-+++||+|+.-|+ |+=... -..|.|... ..+.+ ++++.|.... -+.....+|.+||++.+...+.++++.++
T Consensus 333 ~L~~~G~k~~~~i~-P~i~~~-s~~f~e~~~--~gy~vk~~~G~~~~~~~-W~g~~~~~Dftnp~ar~W~~~~~~~l~d~ 407 (665)
T PRK10658 333 RLKAKGLKICVWIN-PYIAQK-SPLFKEGKE--KGYLLKRPDGSVWQWDK-WQPGMAIVDFTNPDACKWYADKLKGLLDM 407 (665)
T ss_pred HHHHCCCEEEEecc-CCcCCC-chHHHHHHH--CCeEEECCCCCEeeeee-cCCCceeecCCCHHHHHHHHHHHHHHHhc
Confidence 99999999998775 221100 000111110 00000 1222221100 01234578999999999999999888764
No 78
>PRK07681 aspartate aminotransferase; Provisional
Probab=53.38 E-value=40 Score=36.35 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=21.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEE
Q 007722 245 MQYSPDDVKKIVEFGLDHGVRVI 267 (591)
Q Consensus 245 ~~YT~~ei~eiv~yA~~rgI~VI 267 (591)
..||++++++|++.|+++++-||
T Consensus 181 ~~~s~~~~~~i~~~a~~~~~~iI 203 (399)
T PRK07681 181 AMAHEDFFKEVIAFAKKHNIIVV 203 (399)
T ss_pred cCCCHHHHHHHHHHHHHcCeEEE
Confidence 47899999999999999999877
No 79
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=53.19 E-value=1.1e+02 Score=35.77 Aligned_cols=133 Identities=17% Similarity=0.312 Sum_probs=86.1
Q ss_pred CChHHHHHHHHHHHHCCCcEEEE-EecCCCCCcccCCCCCCcccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEEcc-CC
Q 007722 195 YGVGDIMRTIYAMSANKMNVFHW-HITDSPSFPLNLPSEPGLAAKGSYGDDMQYSPDDVKKIVEFGLDHGVRVIPEI-DS 272 (591)
Q Consensus 195 ~~~~~lk~~Id~ma~~KlN~lhl-HltDd~~frle~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPEI-D~ 272 (591)
+|-+.+++-|+.|...++|++-. .+. |.+-- |+ .|.| -+|.-|.. +++-|.+-||.||--- -+
T Consensus 27 ~p~~~w~ddl~~mk~~G~N~V~ig~fa----W~~~e---P~---eG~f----df~~~D~~-~l~~a~~~Gl~vil~t~P~ 91 (673)
T COG1874 27 WPRETWMDDLRKMKALGLNTVRIGYFA----WNLHE---PE---EGKF----DFTWLDEI-FLERAYKAGLYVILRTGPT 91 (673)
T ss_pred CCHHHHHHHHHHHHHhCCCeeEeeeEE----eeccC---cc---cccc----CcccchHH-HHHHHHhcCceEEEecCCC
Confidence 45689999999999999998887 553 54322 22 2333 13444444 6999999999999665 34
Q ss_pred CCchhhHHHhCchhhhhcccccCcCCCCCCcccccCCCCCcCCCCChhHHHHHHHHHHHHHHh-CCC----CceecCCCC
Q 007722 273 PGHTGSWAEAYPEIVTCANMFWWPAESKGEDKLAAEPGTGQLNPLNPKTYQVFKNVISDVVKM-FPE----PFFHAGADE 347 (591)
Q Consensus 273 PGH~~a~~~~~pel~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~ll~Ev~~l-F~~----~~iHIGgDE 347 (591)
.++.....+.|||+....+. +. ......-..+|++++--.+.+..|+..+.+- ... -.+|+-- |
T Consensus 92 g~~P~Wl~~~~PeiL~~~~~--------~~--~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~~~~~~~v~~w~~dn-e 160 (673)
T COG1874 92 GAPPAWLAKKYPEILAVDEN--------GR--VRSDGARENICPVSPVYREYLDRILQQIRERLYGNGPAVITWQNDN-E 160 (673)
T ss_pred CCCchHHhcCChhheEecCC--------Cc--ccCCCcccccccccHHHHHHHHHHHHHHHHHHhccCCceeEEEccC-c
Confidence 56665566789998643211 11 1122334579999996677888887777776 431 3567654 6
Q ss_pred CCC-CCC
Q 007722 348 VTP-GCW 353 (591)
Q Consensus 348 v~~-~~w 353 (591)
+.. .||
T Consensus 161 Y~~~~~~ 167 (673)
T COG1874 161 YGGHPCY 167 (673)
T ss_pred cCCcccc
Confidence 654 454
No 80
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=52.85 E-value=29 Score=37.33 Aligned_cols=63 Identities=16% Similarity=0.323 Sum_probs=42.4
Q ss_pred cceeCCCCCCCChHHHHHHHHHHHHCCCcEEE--EEecCCCCCcccCCCCCCcccCCCCCCCCCCCHHHHHHHHHHHHhc
Q 007722 185 GLLLDTSRNYYGVGDIMRTIYAMSANKMNVFH--WHITDSPSFPLNLPSEPGLAAKGSYGDDMQYSPDDVKKIVEFGLDH 262 (591)
Q Consensus 185 G~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lh--lHltDd~~frle~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~r 262 (591)
|+-+-.+.. +.+..+++|+.|+.+++..+- +|+-++ .+ .-..+++++|.++|+++
T Consensus 3 GiSvY~~~~--~~~~~~~yi~~a~~~Gf~~iFTSL~ipe~---------~~------------~~~~~~~~~l~~~a~~~ 59 (357)
T PF05913_consen 3 GISVYPGQS--SFEENKAYIEKAAKYGFKRIFTSLHIPED---------DP------------EDYLERLKELLKLAKEL 59 (357)
T ss_dssp EEEE-CCCS---HHHHHHHHHHHHCTTEEEEEEEE------------------------------HHHHHHHHHHHHHHC
T ss_pred EEEEeCCCC--CHHHHHHHHHHHHHCCCCEEECCCCcCCC---------CH------------HHHHHHHHHHHHHHHHC
Confidence 444444444 788999999999999998654 333211 00 01569999999999999
Q ss_pred CCEEEEcc
Q 007722 263 GVRVIPEI 270 (591)
Q Consensus 263 gI~VIPEI 270 (591)
|++||..|
T Consensus 60 ~~~v~~Di 67 (357)
T PF05913_consen 60 GMEVIADI 67 (357)
T ss_dssp T-EEEEEE
T ss_pred CCEEEEEC
Confidence 99999888
No 81
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=52.31 E-value=41 Score=36.54 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=20.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEE
Q 007722 245 MQYSPDDVKKIVEFGLDHGVRVI 267 (591)
Q Consensus 245 ~~YT~~ei~eiv~yA~~rgI~VI 267 (591)
..+|.+++++|++.|+++++-||
T Consensus 192 ~~~s~~~~~~l~~~a~~~~~~ii 214 (412)
T PTZ00433 192 SNFSRKHVEDIIRLCEELRLPLI 214 (412)
T ss_pred cccCHHHHHHHHHHHHHcCCeEE
Confidence 36899999999999999998777
No 82
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=51.81 E-value=74 Score=35.22 Aligned_cols=62 Identities=21% Similarity=0.343 Sum_probs=39.9
Q ss_pred CCCCCC-CChHHHHHHHHHHHHCCCcEEEEEecCCCCCcccCCCCCCcccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEE
Q 007722 189 DTSRNY-YGVGDIMRTIYAMSANKMNVFHWHITDSPSFPLNLPSEPGLAAKGSYGDDMQYSPDDVKKIVEFGLDHGVRVI 267 (591)
Q Consensus 189 D~aR~f-~~~~~lk~~Id~ma~~KlN~lhlHltDd~~frle~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VI 267 (591)
|...+| +.++.+++.++....-+.++=-+.++. +.-| .| ..|+++++++|++.|++++|-||
T Consensus 175 ~~~~~f~~~~~~le~a~~~a~~~~~~vk~lll~n--------P~NP----tG-----~~~s~e~l~~l~~~~~~~~i~lI 237 (447)
T PLN02607 175 DSSNNFQVTPQALEAAYQEAEAANIRVRGVLITN--------PSNP----LG-----ATVQRSVLEDILDFVVRKNIHLV 237 (447)
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCeeEEEEeC--------CCCC----cC-----cccCHHHHHHHHHHHHHCCCEEE
Confidence 434455 557777777766544444432223331 2233 13 46999999999999999999988
No 83
>PLN02656 tyrosine transaminase
Probab=51.30 E-value=39 Score=36.64 Aligned_cols=23 Identities=35% Similarity=0.316 Sum_probs=21.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEE
Q 007722 245 MQYSPDDVKKIVEFGLDHGVRVI 267 (591)
Q Consensus 245 ~~YT~~ei~eiv~yA~~rgI~VI 267 (591)
..||.+++++|++.|+++|+-||
T Consensus 184 ~~~s~~~~~~i~~~a~~~~~~ii 206 (409)
T PLN02656 184 NVYSYQHLKKIAETAEKLKILVI 206 (409)
T ss_pred CCCCHHHHHHHHHHHHHcCCEEE
Confidence 46899999999999999998877
No 84
>PTZ00377 alanine aminotransferase; Provisional
Probab=50.83 E-value=39 Score=37.62 Aligned_cols=23 Identities=17% Similarity=0.472 Sum_probs=21.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEE
Q 007722 245 MQYSPDDVKKIVEFGLDHGVRVI 267 (591)
Q Consensus 245 ~~YT~~ei~eiv~yA~~rgI~VI 267 (591)
..||.+++++|++.|+++++-||
T Consensus 233 ~~~s~e~~~~i~~~a~~~~~~iI 255 (481)
T PTZ00377 233 QVLTRDVMEEIIKFCYEKGIVLM 255 (481)
T ss_pred cCCCHHHHHHHHHHHHHCCCEEE
Confidence 46899999999999999999776
No 85
>PRK10626 hypothetical protein; Provisional
Probab=50.74 E-value=47 Score=33.67 Aligned_cols=49 Identities=12% Similarity=0.165 Sum_probs=34.1
Q ss_pred CcccCCcEEEEeCCeeeEEcCCCeEEEeCCC----ChHHHHHHHHHHHHHHhh
Q 007722 35 DVWPKPRLLRWAPLHQLSLLSPSFTIASPYD----HPHLSSAVSRYLTLIKTE 83 (591)
Q Consensus 35 ~l~P~P~~~~~~~~~~~~~l~~~~~i~~~~~----~~~l~~a~~~~~~~l~~~ 83 (591)
.|+=.|++++..+..|.+.++++-.+.+.+. ++.-++++.+|++.+++.
T Consensus 31 DV~Itpq~v~V~~~sg~l~I~~dg~L~inGk~v~L~~~Qqq~~~~Yq~~lr~~ 83 (239)
T PRK10626 31 DVIISPQTVQVVGASGNLVISPDGNVMRNGKQLSLNAAQRQQAKDYQAALRQD 83 (239)
T ss_pred CeEEcCCeEEEEecCCceEEcCCCCEEECCEEecCCHHHHHHHHHHHHHHHHH
Confidence 3555588877766556888888755555431 356788899999998864
No 86
>KOG3698 consensus Hyaluronoglucosaminidase [Posttranslational modification, protein turnover, chaperones]
Probab=50.63 E-value=21 Score=40.21 Aligned_cols=69 Identities=12% Similarity=0.257 Sum_probs=53.7
Q ss_pred CCCCChHHHHHHHHHHHHCCCcEEEEEecCCCCCcccCCCCCCcccCCCCCCCCCCCHHH---HHHHHHHHHhcCCEEEE
Q 007722 192 RNYYGVGDIMRTIYAMSANKMNVFHWHITDSPSFPLNLPSEPGLAAKGSYGDDMQYSPDD---VKKIVEFGLDHGVRVIP 268 (591)
Q Consensus 192 R~f~~~~~lk~~Id~ma~~KlN~lhlHltDd~~frle~~~~P~Lt~~ga~~~~~~YT~~e---i~eiv~yA~~rgI~VIP 268 (591)
.+.+.++.-|.+.+.+...+||+.-.-..||---| .+ |+ +-|+.|| ++.||+-|++.+|+.|=
T Consensus 27 GRPWt~EQRK~LFrrl~~~gl~tYlYAPKDDyKHR-------~~-----WR--ElY~vEEa~~L~~Li~aAke~~i~F~Y 92 (891)
T KOG3698|consen 27 GRPWTPEQRKHLFRRLNQLGLTTYLYAPKDDYKHR-------SL-----WR--ELYNVEEATYLRNLIEAAKENNINFVY 92 (891)
T ss_pred CCCCCHHHHHHHHHHHHhcccceeeecccchhHHH-------HH-----HH--HHhhhHHHHHHHHHHHHHHhcCceEEE
Confidence 55778999999999999999999988888874322 11 21 4577776 67899999999999997
Q ss_pred ccCCCCc
Q 007722 269 EIDSPGH 275 (591)
Q Consensus 269 EID~PGH 275 (591)
-| +||-
T Consensus 93 Ai-SPGl 98 (891)
T KOG3698|consen 93 AI-SPGL 98 (891)
T ss_pred Ec-CCCc
Confidence 76 5653
No 87
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=49.87 E-value=15 Score=35.52 Aligned_cols=84 Identities=13% Similarity=0.167 Sum_probs=54.4
Q ss_pred ChHHHHHHHHHHHHCCCcEEEEEecCCCCCc---ccCCCCCCcccCCC--C------------CCCCCCCHHHHHHHHHH
Q 007722 196 GVGDIMRTIYAMSANKMNVFHWHITDSPSFP---LNLPSEPGLAAKGS--Y------------GDDMQYSPDDVKKIVEF 258 (591)
Q Consensus 196 ~~~~lk~~Id~ma~~KlN~lhlHltDd~~fr---le~~~~P~Lt~~ga--~------------~~~~~YT~~ei~eiv~y 258 (591)
+.+.++++++.+...++..+++.+++..... .-.+.+|++. .|+ - +.++.-+.....+++++
T Consensus 14 ~~~~~~~~~~~l~~~G~~~vev~~~~~~~~~~i~~l~~~~~~~~-iGag~v~~~~~~~~a~~~Ga~~i~~p~~~~~~~~~ 92 (190)
T cd00452 14 DAEDALALAEALIEGGIRAIEITLRTPGALEAIRALRKEFPEAL-IGAGTVLTPEQADAAIAAGAQFIVSPGLDPEVVKA 92 (190)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHHCCCCE-EEEEeCCCHHHHHHHHHcCCCEEEcCCCCHHHHHH
Confidence 4788899999999999999999987653221 1113455431 121 0 11112222334679999
Q ss_pred HHhcCCEEEEccCCCCchhhHH
Q 007722 259 GLDHGVRVIPEIDSPGHTGSWA 280 (591)
Q Consensus 259 A~~rgI~VIPEID~PGH~~a~~ 280 (591)
|+.+|+.+||++.+|.+.....
T Consensus 93 ~~~~~~~~i~gv~t~~e~~~A~ 114 (190)
T cd00452 93 ANRAGIPLLPGVATPTEIMQAL 114 (190)
T ss_pred HHHcCCcEECCcCCHHHHHHHH
Confidence 9999999999999886654444
No 88
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=49.29 E-value=75 Score=34.20 Aligned_cols=24 Identities=13% Similarity=0.282 Sum_probs=21.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEEE
Q 007722 245 MQYSPDDVKKIVEFGLDHGVRVIP 268 (591)
Q Consensus 245 ~~YT~~ei~eiv~yA~~rgI~VIP 268 (591)
..+|.+++++|++.|+++++-||=
T Consensus 187 ~~~s~~~~~~l~~~a~~~~~~ii~ 210 (396)
T PRK09257 187 ADLTPEQWDELAELLKERGLIPFL 210 (396)
T ss_pred CCCCHHHHHHHHHHHHhCCcEEEE
Confidence 368999999999999999998873
No 89
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=49.10 E-value=22 Score=36.33 Aligned_cols=74 Identities=12% Similarity=0.211 Sum_probs=49.4
Q ss_pred CCCHHHHHHHHHHHHhcCCEEEEccCCCCchhhHHHhCchhhhhcccccCcCCCCCCcccccCCCCCcCCCCChhHHHHH
Q 007722 246 QYSPDDVKKIVEFGLDHGVRVIPEIDSPGHTGSWAEAYPEIVTCANMFWWPAESKGEDKLAAEPGTGQLNPLNPKTYQVF 325 (591)
Q Consensus 246 ~YT~~ei~eiv~yA~~rgI~VIPEID~PGH~~a~~~~~pel~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl 325 (591)
.++++++++|+++|+++|++++-|+..--+..-+++.-+.+.. +|-.|=.|++.-
T Consensus 139 ~L~~~~l~el~~~A~~LGm~~LVEVh~~eEl~rAl~~ga~iIG-------------------------INnRdL~tf~vd 193 (254)
T COG0134 139 ALDDEQLEELVDRAHELGMEVLVEVHNEEELERALKLGAKIIG-------------------------INNRDLTTLEVD 193 (254)
T ss_pred hcCHHHHHHHHHHHHHcCCeeEEEECCHHHHHHHHhCCCCEEE-------------------------EeCCCcchheec
Confidence 5789999999999999999999999555444434433222211 233344555655
Q ss_pred HHHHHHHHHhCCCCceecC
Q 007722 326 KNVISDVVKMFPEPFFHAG 344 (591)
Q Consensus 326 ~~ll~Ev~~lF~~~~iHIG 344 (591)
-+...++++..|...+=|.
T Consensus 194 l~~t~~la~~~p~~~~~Is 212 (254)
T COG0134 194 LETTEKLAPLIPKDVILIS 212 (254)
T ss_pred HHHHHHHHhhCCCCcEEEe
Confidence 5667888888887644443
No 90
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=48.86 E-value=76 Score=31.53 Aligned_cols=69 Identities=14% Similarity=0.113 Sum_probs=41.9
Q ss_pred CChHHHHHHHHHHHHCCCcEEEEEecCCCCCcccCCCCCCcccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEE
Q 007722 195 YGVGDIMRTIYAMSANKMNVFHWHITDSPSFPLNLPSEPGLAAKGSYGDDMQYSPDDVKKIVEFGLDHGVRVI 267 (591)
Q Consensus 195 ~~~~~lk~~Id~ma~~KlN~lhlHltDd~~frle~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VI 267 (591)
-+.+.|+++.+.++.+... ++||.-- .++-..+|-.|...-........++++++++.+.++++|+.++
T Consensus 142 d~~e~i~~ia~~l~~l~~~--~~~llpy--h~~g~~Ky~~lg~~y~~~~~~~~~~~~l~~~~~~~~~~gl~~~ 210 (213)
T PRK10076 142 LSRENMQQALDVLIPLGIK--QIHLLPF--HQYGEPKYRLLGKTWSMKEVPAPSSADVATMREMAERAGFQVT 210 (213)
T ss_pred CCHHHHHHHHHHHHHcCCc--eEEEecC--CccchhHHHHcCCcCccCCCCCcCHHHHHHHHHHHHHcCCeEE
Confidence 3578999999999987555 5555321 1111122222211000111234599999999999999999986
No 91
>PRK06348 aspartate aminotransferase; Provisional
Probab=48.82 E-value=48 Score=35.55 Aligned_cols=23 Identities=13% Similarity=0.397 Sum_probs=21.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEE
Q 007722 245 MQYSPDDVKKIVEFGLDHGVRVI 267 (591)
Q Consensus 245 ~~YT~~ei~eiv~yA~~rgI~VI 267 (591)
..+|.+++++|++.|+++++-||
T Consensus 177 ~~~s~~~~~~l~~~a~~~~~~ii 199 (384)
T PRK06348 177 AVFSKETLEEIAKIAIEYDLFII 199 (384)
T ss_pred cCCCHHHHHHHHHHHHHCCeEEE
Confidence 46899999999999999999877
No 92
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=48.81 E-value=3.6e+02 Score=28.68 Aligned_cols=125 Identities=18% Similarity=0.157 Sum_probs=70.4
Q ss_pred CCCChHHHHHHHHHHHHCCCcEEEEEecCC-----CCCcccCCCCCCcccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEE
Q 007722 193 NYYGVGDIMRTIYAMSANKMNVFHWHITDS-----PSFPLNLPSEPGLAAKGSYGDDMQYSPDDVKKIVEFGLDHGVRVI 267 (591)
Q Consensus 193 ~f~~~~~lk~~Id~ma~~KlN~lhlHltDd-----~~frle~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VI 267 (591)
++.+-+.++++++.+...++..=.+++..+ ..|.+.-+ .|..-..+++|+.-+++||+|+
T Consensus 19 ~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~~~~f~~d~~---------------~FPdp~~~~mi~~L~~~G~k~~ 83 (339)
T cd06602 19 GYKNVDEVKEVVENMRAAGIPLDVQWNDIDYMDRRRDFTLDPV---------------RFPGLKMPEFVDELHANGQHYV 83 (339)
T ss_pred CCCCHHHHHHHHHHHHHhCCCcceEEECcccccCccceecccc---------------cCCCccHHHHHHHHHHCCCEEE
Confidence 456889999999999999998655566432 12222222 2322233889999999999999
Q ss_pred EccCCCCchhhH-HHhCchhhhhcc-cccCc--CCCCCCcccccCC-CCCcCCCCChhHHHHHHHHHHHHHHh
Q 007722 268 PEIDSPGHTGSW-AEAYPEIVTCAN-MFWWP--AESKGEDKLAAEP-GTGQLNPLNPKTYQVFKNVISDVVKM 335 (591)
Q Consensus 268 PEID~PGH~~a~-~~~~pel~~~~~-~~~~~--~~~~~~~~~~~~~-~~~~L~~~~~~t~~fl~~ll~Ev~~l 335 (591)
+-|+ |+-...- ...|+.+..... .+... ++..+. ....+ ....+|.+||++.+...+.++++.+-
T Consensus 84 ~~i~-P~v~~~~~~~~~~~~~e~~~~g~~v~~~~g~~~~--~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~ 153 (339)
T cd06602 84 PILD-PAISANEPTGSYPPYDRGLEMDVFIKNDDGSPYI--GKVWPGYTVFPDFLNPNTQEWWTDEIKDFHDQ 153 (339)
T ss_pred EEEe-CccccCcCCCCCHHHHHHHHCCeEEECCCCCEEE--EEeCCCCCcCcCCCCHHHHHHHHHHHHHHHhc
Confidence 9875 4422110 011222211100 00000 011000 00011 12458999999999999999887654
No 93
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=48.69 E-value=51 Score=31.32 Aligned_cols=63 Identities=14% Similarity=0.208 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHHHCCCcEEEEEecCCCCCcccCCCCCCcccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEEcc
Q 007722 197 VGDIMRTIYAMSANKMNVFHWHITDSPSFPLNLPSEPGLAAKGSYGDDMQYSPDDVKKIVEFGLDHGVRVIPEI 270 (591)
Q Consensus 197 ~~~lk~~Id~ma~~KlN~lhlHltDd~~frle~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPEI 270 (591)
++.+++.|+.++.++...+.+|... |+. .+....... .....+-+++|.++|+++||+|..|-
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~---~~~----~~~~~~~~~----~~~~~~~l~~l~~~a~~~gv~i~lE~ 132 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGR---YPS----GPEDDTEEN----WERLAENLRELAEIAEEYGVRIALEN 132 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTT---ESS----STTSSHHHH----HHHHHHHHHHHHHHHHHHTSEEEEE-
T ss_pred HHHHHHHHHHHHHhCCCceeecCcc---ccc----ccCCCHHHH----HHHHHHHHHHHHhhhhhhcceEEEec
Confidence 7899999999999999999999752 100 111100000 01244679999999999999999984
No 94
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=48.47 E-value=66 Score=35.42 Aligned_cols=84 Identities=19% Similarity=0.340 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHHHCCCcEEEEEecCCCCC---cccCCC----CCCcccCCCCCCCCCCCHHHHHHHHHHH-HhcCCEEEE
Q 007722 197 VGDIMRTIYAMSANKMNVFHWHITDSPSF---PLNLPS----EPGLAAKGSYGDDMQYSPDDVKKIVEFG-LDHGVRVIP 268 (591)
Q Consensus 197 ~~~lk~~Id~ma~~KlN~lhlHltDd~~f---rle~~~----~P~Lt~~ga~~~~~~YT~~ei~eiv~yA-~~rgI~VIP 268 (591)
.+...+.++..+..++|.+|+-.--.-|- ++.+.. .|.+. .+..-++.++++++|.-+ +++||-.|-
T Consensus 21 ~~~W~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~~~~-----~~~~~~~~~~v~~~v~~~~~~~~ll~~~ 95 (423)
T PF14701_consen 21 FSDWEKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDPDFF-----PPGKESTFEDVKEFVKEAEKKYGLLSMT 95 (423)
T ss_pred HhHHHHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcChhhc-----CCCccccHHHHHHHHHHHHHHcCceEEE
Confidence 46778888999999999999653211111 111111 12221 122346889999999998 589999988
Q ss_pred ccCCCCchh---hHHHhCchh
Q 007722 269 EIDSPGHTG---SWAEAYPEI 286 (591)
Q Consensus 269 EID~PGH~~---a~~~~~pel 286 (591)
.| +.-|+. .|+..|||-
T Consensus 96 Dv-V~NHtA~nS~Wl~eHPEa 115 (423)
T PF14701_consen 96 DV-VLNHTANNSPWLREHPEA 115 (423)
T ss_pred EE-eeccCcCCChHHHhCccc
Confidence 87 556664 599999985
No 95
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=48.35 E-value=64 Score=34.43 Aligned_cols=23 Identities=22% Similarity=0.195 Sum_probs=20.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEE
Q 007722 245 MQYSPDDVKKIVEFGLDHGVRVI 267 (591)
Q Consensus 245 ~~YT~~ei~eiv~yA~~rgI~VI 267 (591)
..||.+++++|++.|+++|+-||
T Consensus 179 ~~~~~~~~~~i~~~a~~~~~~ii 201 (383)
T TIGR03540 179 AVAPLKFFKELVEFAKEYNIIVC 201 (383)
T ss_pred ccCCHHHHHHHHHHHHHcCEEEE
Confidence 46899999999999999999776
No 96
>PRK08636 aspartate aminotransferase; Provisional
Probab=48.32 E-value=77 Score=34.22 Aligned_cols=23 Identities=9% Similarity=0.125 Sum_probs=21.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEE
Q 007722 245 MQYSPDDVKKIVEFGLDHGVRVI 267 (591)
Q Consensus 245 ~~YT~~ei~eiv~yA~~rgI~VI 267 (591)
..||.+++++|++.|+++++-||
T Consensus 190 ~~~s~~~~~~l~~~a~~~~~~II 212 (403)
T PRK08636 190 ATVEKSFYERLVALAKKERFYII 212 (403)
T ss_pred ccCCHHHHHHHHHHHHHcCcEEE
Confidence 47999999999999999999887
No 97
>PRK05942 aspartate aminotransferase; Provisional
Probab=47.53 E-value=59 Score=34.95 Aligned_cols=23 Identities=13% Similarity=0.202 Sum_probs=21.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEE
Q 007722 245 MQYSPDDVKKIVEFGLDHGVRVI 267 (591)
Q Consensus 245 ~~YT~~ei~eiv~yA~~rgI~VI 267 (591)
..+|.+++++|++.|+++++-||
T Consensus 185 ~~~s~~~~~~i~~~a~~~~~~iI 207 (394)
T PRK05942 185 ATAPREFFEEIVAFARKYEIMLV 207 (394)
T ss_pred CcCCHHHHHHHHHHHHHcCeEEE
Confidence 46899999999999999999887
No 98
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=46.56 E-value=65 Score=40.57 Aligned_cols=86 Identities=20% Similarity=0.227 Sum_probs=56.8
Q ss_pred CCCC-hHHHHHHHHHHHHCCCcEEEEEecCCCC---CcccCCCCCCcccCCCCCCCCC----CCHHHHHHHHHHHHhc-C
Q 007722 193 NYYG-VGDIMRTIYAMSANKMNVFHWHITDSPS---FPLNLPSEPGLAAKGSYGDDMQ----YSPDDVKKIVEFGLDH-G 263 (591)
Q Consensus 193 ~f~~-~~~lk~~Id~ma~~KlN~lhlHltDd~~---frle~~~~P~Lt~~ga~~~~~~----YT~~ei~eiv~yA~~r-g 263 (591)
+++. .+...+-++.++..++|.+|+-.---.| =++.+..|=++ . ..+ -|.+|++++|+-|.++ |
T Consensus 126 K~mG~~~~w~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ysi~Dyl~i------d-P~~~~~~~~~~d~~~lV~~~h~~~G 198 (1464)
T TIGR01531 126 KLLGPLSEWEPRLRVAKEKGYNMIHFTPLQELGGSNSCYSLYDQLQL------N-QHFKSQKDGKNDVQALVEKLHRDWN 198 (1464)
T ss_pred hhcCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCccccchhhc------C-hhhcccCCcHHHHHHHHHHHHHhcC
Confidence 3443 4778889999999999999975321101 01111111000 0 011 3789999999999996 9
Q ss_pred CEEEEccCCCCchh---hHHHhCchh
Q 007722 264 VRVIPEIDSPGHTG---SWAEAYPEI 286 (591)
Q Consensus 264 I~VIPEID~PGH~~---a~~~~~pel 286 (591)
|.+|-.+ +..|+. .|+..|||-
T Consensus 199 m~~ilDv-V~NHTa~ds~Wl~eHPEa 223 (1464)
T TIGR01531 199 VLSITDI-VFNHTANNSPWLLEHPEA 223 (1464)
T ss_pred CEEEEEe-eecccccCCHHHHhChHh
Confidence 9999887 677775 488889984
No 99
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=46.47 E-value=27 Score=36.53 Aligned_cols=63 Identities=17% Similarity=0.136 Sum_probs=46.8
Q ss_pred hhhHHHHHHHHHhcC---CCcccccceEEecCCCCCcccceeCCC--CCCCChHHHHHHHHHHHHCCCcEEE
Q 007722 150 GAMRGLETFSQLVWG---RPSRVPVGVYVWDDPIFPHRGLLLDTS--RNYYGVGDIMRTIYAMSANKMNVFH 216 (591)
Q Consensus 150 G~~~g~~Tl~Ql~~~---~~~~~p~~~~I~D~P~f~~RG~mlD~a--R~f~~~~~lk~~Id~ma~~KlN~lh 216 (591)
|.+.-+++|.+++.. -+...- -++++| .|+++|.- .++ +.+++.++++++++..+..+++++=
T Consensus 11 ~~~~~~~~lk~~id~ma~~k~N~l-~lhl~D--~f~~~~~p-~~~~~~~~yT~~ei~ei~~yA~~~gI~vIP 78 (301)
T cd06565 11 NAVPKVSYLKKLLRLLALLGANGL-LLYYED--TFPYEGEP-EVGRMRGAYTKEEIREIDDYAAELGIEVIP 78 (301)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEE-EEEEec--ceecCCCc-ccccCCCCcCHHHHHHHHHHHHHcCCEEEe
Confidence 366778888888861 111111 467889 78888863 443 6899999999999999999998864
No 100
>PRK09265 aminotransferase AlaT; Validated
Probab=46.20 E-value=86 Score=33.83 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=20.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEE
Q 007722 245 MQYSPDDVKKIVEFGLDHGVRVI 267 (591)
Q Consensus 245 ~~YT~~ei~eiv~yA~~rgI~VI 267 (591)
..++.+++++|++.|+++|+-||
T Consensus 183 ~~~~~~~~~~i~~~a~~~~~~ii 205 (404)
T PRK09265 183 AVYSKELLEEIVEIARQHNLIIF 205 (404)
T ss_pred cCCCHHHHHHHHHHHHHCCCEEE
Confidence 36899999999999999999877
No 101
>COG3056 Uncharacterized lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=46.15 E-value=72 Score=31.01 Aligned_cols=38 Identities=24% Similarity=0.318 Sum_probs=21.3
Q ss_pred ccEEEEEccCCCCCCCCCCcceEEEeeCCCCcEEEEecChhh
Q 007722 109 QSLHIFIHRLHAPLHHGVNESYTLHVPNDRPTANLTAETPWG 150 (591)
Q Consensus 109 ~~i~i~~~~~~~~l~~~~~E~Y~L~i~~~~~~i~I~a~~~~G 150 (591)
.++.|.++.--..... +.=-|.|... -.|+|.|.++.|
T Consensus 114 ~n~~i~V~qlya~V~q-gnlryni~tk---v~i~I~A~~~~G 151 (204)
T COG3056 114 VNLQITVDQLYADVEQ-GNLRYNIDTK---VDITITATAANG 151 (204)
T ss_pred ceEEEEhHHhhhhhhh-cceeecccce---EEEEEEEEcCCC
Confidence 4577777532111111 2234777665 358888888777
No 102
>PRK07590 L,L-diaminopimelate aminotransferase; Validated
Probab=45.47 E-value=1.1e+02 Score=33.05 Aligned_cols=23 Identities=13% Similarity=0.407 Sum_probs=21.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEE
Q 007722 245 MQYSPDDVKKIVEFGLDHGVRVI 267 (591)
Q Consensus 245 ~~YT~~ei~eiv~yA~~rgI~VI 267 (591)
..||.+++++|++.|+++++-||
T Consensus 191 ~~~s~~~~~~l~~~a~~~~~~iI 213 (409)
T PRK07590 191 TVLTKEQLKAWVDYAKENGSLIL 213 (409)
T ss_pred CcCCHHHHHHHHHHHHHcCeEEE
Confidence 57999999999999999999777
No 103
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=45.07 E-value=68 Score=32.47 Aligned_cols=64 Identities=8% Similarity=0.081 Sum_probs=44.4
Q ss_pred ChHHHHHHHHHHHHCCCcEEEEEecCCCCCcccCCCCCCcccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEEccCC
Q 007722 196 GVGDIMRTIYAMSANKMNVFHWHITDSPSFPLNLPSEPGLAAKGSYGDDMQYSPDDVKKIVEFGLDHGVRVIPEIDS 272 (591)
Q Consensus 196 ~~~~lk~~Id~ma~~KlN~lhlHltDd~~frle~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPEID~ 272 (591)
.++.+++.|+..+..+...+.+|.... ++.- .. .-.| .-..+-+++|.++|+++||+|.-|--.
T Consensus 88 ~~~~~~~~i~~a~~lGa~~i~~~~~~~-~~~~---~~-----~~~~----~~~~~~l~~l~~~a~~~gv~l~iE~~~ 151 (275)
T PRK09856 88 SLDMIKLAMDMAKEMNAGYTLISAAHA-GYLT---PP-----NVIW----GRLAENLSELCEYAENIGMDLILEPLT 151 (275)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCCCC-CCCC---CH-----HHHH----HHHHHHHHHHHHHHHHcCCEEEEecCC
Confidence 367899999999999999999886532 2210 00 0000 013356999999999999999988533
No 104
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=44.94 E-value=84 Score=31.26 Aligned_cols=81 Identities=6% Similarity=0.004 Sum_probs=58.7
Q ss_pred ChHHHHHHHHHHHHCCCcEEEEEecCCCCCcc---cCCCC---CCcccCCCCCCCCCCCHHHHH----------------
Q 007722 196 GVGDIMRTIYAMSANKMNVFHWHITDSPSFPL---NLPSE---PGLAAKGSYGDDMQYSPDDVK---------------- 253 (591)
Q Consensus 196 ~~~~lk~~Id~ma~~KlN~lhlHltDd~~frl---e~~~~---P~Lt~~ga~~~~~~YT~~ei~---------------- 253 (591)
+.+...++++.|..-++..+..-++...+... -.+.| |++. .|+ +..+|.+|++
T Consensus 23 ~~~~a~~~~~al~~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~~-vGa---GTV~~~~~~~~a~~aGA~FivsP~~~ 98 (213)
T PRK06552 23 SKEEALKISLAVIKGGIKAIEVTYTNPFASEVIKELVELYKDDPEVL-IGA---GTVLDAVTARLAILAGAQFIVSPSFN 98 (213)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCccHHHHHHHHHHHcCCCCCeE-Eee---eeCCCHHHHHHHHHcCCCEEECCCCC
Confidence 78999999999999999999999875443220 01234 4443 343 3466777765
Q ss_pred -HHHHHHHhcCCEEEEccCCCCchhhHH
Q 007722 254 -KIVEFGLDHGVRVIPEIDSPGHTGSWA 280 (591)
Q Consensus 254 -eiv~yA~~rgI~VIPEID~PGH~~a~~ 280 (591)
+++++|+++||-+||-.-+|.-.....
T Consensus 99 ~~v~~~~~~~~i~~iPG~~T~~E~~~A~ 126 (213)
T PRK06552 99 RETAKICNLYQIPYLPGCMTVTEIVTAL 126 (213)
T ss_pred HHHHHHHHHcCCCEECCcCCHHHHHHHH
Confidence 789999999999999998886554443
No 105
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=44.85 E-value=1.2e+02 Score=32.59 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=21.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEE
Q 007722 245 MQYSPDDVKKIVEFGLDHGVRVI 267 (591)
Q Consensus 245 ~~YT~~ei~eiv~yA~~rgI~VI 267 (591)
..||++++++|++.|+++++-||
T Consensus 180 ~~~s~~~~~~l~~~a~~~~~~ii 202 (393)
T TIGR03538 180 AVLSLDTLKKLIELADQYGFIIA 202 (393)
T ss_pred cccCHHHHHHHHHHHHHCCEEEE
Confidence 46899999999999999999777
No 106
>KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism]
Probab=44.63 E-value=1.2e+02 Score=33.06 Aligned_cols=103 Identities=19% Similarity=0.392 Sum_probs=65.9
Q ss_pred cEEEEecChhhhhHHHHHHHHHhc-C--CCcccccceEEecCCCCC---------cccceeCCCCCC-CChHHHHHHHHH
Q 007722 140 TANLTAETPWGAMRGLETFSQLVW-G--RPSRVPVGVYVWDDPIFP---------HRGLLLDTSRNY-YGVGDIMRTIYA 206 (591)
Q Consensus 140 ~i~I~a~~~~G~~~g~~Tl~Ql~~-~--~~~~~p~~~~I~D~P~f~---------~RG~mlD~aR~f-~~~~~lk~~Id~ 206 (591)
.|-+++ |+-.|+.++++|+- + .++.+| |--+|-|. --...||-.+++ +.++.|++.++.
T Consensus 138 dI~LT~----GAS~ai~~il~l~~~~~~~GvliP----iPQYPLYsAti~l~~~~~v~YyLdEe~~W~ld~~el~~~~~e 209 (475)
T KOG0258|consen 138 DIFLTT----GASPAIRSILSLLIAGKKTGVLIP----IPQYPLYSATISLLGGTQVPYYLDEESNWSLDVAELERSVDE 209 (475)
T ss_pred HeeecC----CCcHHHHHHHHHHhcCCCCceEee----cCCCchhHHHHHHhCCcccceeeccccCCCCCHHHHHHHHHH
Confidence 477776 55677889999875 3 222233 32334332 122356777776 567888888877
Q ss_pred HHHCCCcEEEEEecCCCCCcccCCCCCCcccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEE
Q 007722 207 MSANKMNVFHWHITDSPSFPLNLPSEPGLAAKGSYGDDMQYSPDDVKKIVEFGLDHGVRVIP 268 (591)
Q Consensus 207 ma~~KlN~lhlHltDd~~frle~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIP 268 (591)
.. -.+|.=-+-+-+ ++-| . +..+|.+-|++|+.+|++.|+-++.
T Consensus 210 A~-k~i~~r~lvvIN--------PGNP----T-----Gqvls~e~ie~i~~fa~~~~l~lla 253 (475)
T KOG0258|consen 210 AR-KGINPRALVVIN--------PGNP----T-----GQVLSEENIEGIICFAAEEGLVLLA 253 (475)
T ss_pred Hh-ccCCceEEEEEC--------CCCc----c-----chhhcHHHHHHHHHHHHHcCeEEec
Confidence 66 666644433322 2333 1 2578999999999999999999984
No 107
>PLN02231 alanine transaminase
Probab=44.37 E-value=1.1e+02 Score=34.92 Aligned_cols=24 Identities=21% Similarity=0.434 Sum_probs=21.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEEE
Q 007722 245 MQYSPDDVKKIVEFGLDHGVRVIP 268 (591)
Q Consensus 245 ~~YT~~ei~eiv~yA~~rgI~VIP 268 (591)
..||++++++|++.|+++|+-||=
T Consensus 286 ~vls~e~l~~Iv~~a~~~~l~lI~ 309 (534)
T PLN02231 286 QVLAEENQRDIVEFCKQEGLVLLA 309 (534)
T ss_pred cCCCHHHHHHHHHHHHHcCCEEEE
Confidence 479999999999999999998773
No 108
>PRK07324 transaminase; Validated
Probab=44.37 E-value=79 Score=33.82 Aligned_cols=24 Identities=17% Similarity=0.169 Sum_probs=21.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEEE
Q 007722 245 MQYSPDDVKKIVEFGLDHGVRVIP 268 (591)
Q Consensus 245 ~~YT~~ei~eiv~yA~~rgI~VIP 268 (591)
..++++++++|++.|+++|+-||-
T Consensus 168 ~~~~~~~l~~i~~~a~~~~~~ii~ 191 (373)
T PRK07324 168 ALMDRAYLEEIVEIARSVDAYVLS 191 (373)
T ss_pred CCCCHHHHHHHHHHHHHCCCEEEE
Confidence 468999999999999999998884
No 109
>PRK08960 hypothetical protein; Provisional
Probab=43.58 E-value=42 Score=36.02 Aligned_cols=23 Identities=13% Similarity=0.164 Sum_probs=20.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEE
Q 007722 245 MQYSPDDVKKIVEFGLDHGVRVI 267 (591)
Q Consensus 245 ~~YT~~ei~eiv~yA~~rgI~VI 267 (591)
..++.+++++|++.|+++|+-||
T Consensus 180 ~~~~~~~~~~l~~~~~~~~~~li 202 (387)
T PRK08960 180 TLLSRDELAALSQALRARGGHLV 202 (387)
T ss_pred cCcCHHHHHHHHHHHHHcCCEEE
Confidence 46899999999999999999776
No 110
>PRK09275 aspartate aminotransferase; Provisional
Probab=43.27 E-value=53 Score=37.30 Aligned_cols=23 Identities=17% Similarity=0.352 Sum_probs=19.3
Q ss_pred CCCCHHHHHHHHHHHHhc--CCEEE
Q 007722 245 MQYSPDDVKKIVEFGLDH--GVRVI 267 (591)
Q Consensus 245 ~~YT~~ei~eiv~yA~~r--gI~VI 267 (591)
..||++++++|++.|+++ ++-||
T Consensus 256 ~v~s~e~l~~I~~ia~~~~~~l~II 280 (527)
T PRK09275 256 VAMSDESLEKIADIVNEKRPDLMII 280 (527)
T ss_pred CCCCHHHHHHHHHHHHhcCCCcEEE
Confidence 479999999999999754 77766
No 111
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=42.83 E-value=1.5e+02 Score=34.99 Aligned_cols=122 Identities=17% Similarity=0.235 Sum_probs=69.7
Q ss_pred HHHHHHHCCCcEEEEEecCCCCCcccCCCCCCcccCC---CC--------CCCCCC--------CHHHHHHHHHHHHhcC
Q 007722 203 TIYAMSANKMNVFHWHITDSPSFPLNLPSEPGLAAKG---SY--------GDDMQY--------SPDDVKKIVEFGLDHG 263 (591)
Q Consensus 203 ~Id~ma~~KlN~lhlHltDd~~frle~~~~P~Lt~~g---a~--------~~~~~Y--------T~~ei~eiv~yA~~rg 263 (591)
+|+.+..++++.+||-..-+ | ...|.|...| .| .+.+.| -..|+|++|+-..++|
T Consensus 205 ~i~yLk~LGvtaVeLLPV~~--~----~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaG 278 (697)
T COG1523 205 IIDYLKDLGVTAVELLPVFD--F----YDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAG 278 (697)
T ss_pred HHHHHHHhCCceEEEecceE--E----eccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcC
Confidence 39999999999998754321 1 1111121111 11 122222 2359999999999999
Q ss_pred CEEEEccCCCCchhhHH-----HhCchhhhhcccccCcCCCCCCcccccCCC-CCcCCCCChhHHHHHHHHHHHHHHhC
Q 007722 264 VRVIPEIDSPGHTGSWA-----EAYPEIVTCANMFWWPAESKGEDKLAAEPG-TGQLNPLNPKTYQVFKNVISDVVKMF 336 (591)
Q Consensus 264 I~VIPEID~PGH~~a~~-----~~~pel~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~~~~~t~~fl~~ll~Ev~~lF 336 (591)
|+||-.+ +.-|+..-- -....+. ++.|+.-+.. +. ..+..+ .++|+..+|-+.++|-+-|.-..+-+
T Consensus 279 I~VILDV-VfNHTae~~~~g~t~~f~~id--~~~Yyr~~~d--g~-~~N~TGcGNtln~~hpmvrk~ivDsLrYWv~e~ 351 (697)
T COG1523 279 IEVILDV-VFNHTAEGNELGPTLSFRGID--PNYYYRLDPD--GY-YSNGTGCGNTLNTEHPMVRKLIVDSLRYWVEEY 351 (697)
T ss_pred CEEEEEE-eccCcccccCcCcccccccCC--cCceEEECCC--CC-eecCCccCcccccCChHHHHHHHHHHHHHHHHh
Confidence 9999887 677884211 1122221 1112211111 11 122223 35999999999999888777765543
No 112
>PLN02376 1-aminocyclopropane-1-carboxylate synthase
Probab=42.71 E-value=94 Score=34.95 Aligned_cols=23 Identities=13% Similarity=0.349 Sum_probs=20.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEE
Q 007722 245 MQYSPDDVKKIVEFGLDHGVRVI 267 (591)
Q Consensus 245 ~~YT~~ei~eiv~yA~~rgI~VI 267 (591)
..||++++++|++.|++++|-||
T Consensus 214 ~~~s~e~l~~L~~~a~~~~i~lI 236 (496)
T PLN02376 214 TMLDKDTLTNLVRFVTRKNIHLV 236 (496)
T ss_pred ccCCHHHHHHHHHHHHHcCCEEE
Confidence 47999999999999999999766
No 113
>PRK08068 transaminase; Reviewed
Probab=42.67 E-value=59 Score=34.88 Aligned_cols=23 Identities=17% Similarity=0.261 Sum_probs=21.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEE
Q 007722 245 MQYSPDDVKKIVEFGLDHGVRVI 267 (591)
Q Consensus 245 ~~YT~~ei~eiv~yA~~rgI~VI 267 (591)
..||++++++|++.|+++++-||
T Consensus 182 ~~~s~~~~~~l~~la~~~~~~ii 204 (389)
T PRK08068 182 AVATKAFFEETVAFAKKHNIGVV 204 (389)
T ss_pred CcCCHHHHHHHHHHHHHcCeEEE
Confidence 47999999999999999999777
No 114
>PF12971 NAGLU_N: Alpha-N-acetylglucosaminidase (NAGLU) N-terminal domain; InterPro: IPR024240 Alpha-N-acetylglucosaminidase, is a lysosomal enzyme required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase (NAGLU) gene can lead to Mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B) characterised by neurological dysfunction but relatively mild somatic manifestations []. The structure shows that the enzyme is composed of three domains. This entry represents the N-terminal domain of Alpha-N-acetylglucosaminidase which has an alpha-beta fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=42.09 E-value=65 Score=27.14 Aligned_cols=44 Identities=7% Similarity=0.081 Sum_probs=31.2
Q ss_pred cEEEEEccCCCCCCCCCCcceEEEe-eCCCCcEEEEecChhhhhHHHHHHHH
Q 007722 110 SLHIFIHRLHAPLHHGVNESYTLHV-PNDRPTANLTAETPWGAMRGLETFSQ 160 (591)
Q Consensus 110 ~i~i~~~~~~~~l~~~~~E~Y~L~i-~~~~~~i~I~a~~~~G~~~g~~Tl~Q 160 (591)
.+.+.+..... +.+.|+|.- . +++|+|+|++..-+.+|+..-+-
T Consensus 19 ~f~~~~~~~~~-----~~d~F~l~~~~--~gki~I~G~s~vala~Gl~~YLk 63 (86)
T PF12971_consen 19 QFTFELIPSSN-----GKDVFELSSAD--NGKIVIRGNSGVALASGLNWYLK 63 (86)
T ss_dssp GEEEEE---BT-----TBEEEEEEE-S--SS-EEEEESSHHHHHHHHHHHHH
T ss_pred eEEEEEecCCC-----CCCEEEEEeCC--CCeEEEEeCCHHHHHHHHHHHHH
Confidence 46777754321 578899988 4 67899999999999999987544
No 115
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=41.76 E-value=82 Score=33.85 Aligned_cols=59 Identities=12% Similarity=0.195 Sum_probs=42.2
Q ss_pred CCCCChHHHHHHHHHHHHCCCcEEEEEecCCCCCcccCCCCCCcccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEEccC
Q 007722 192 RNYYGVGDIMRTIYAMSANKMNVFHWHITDSPSFPLNLPSEPGLAAKGSYGDDMQYSPDDVKKIVEFGLDHGVRVIPEID 271 (591)
Q Consensus 192 R~f~~~~~lk~~Id~ma~~KlN~lhlHltDd~~frle~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPEID 271 (591)
+..++.+.++++|+.+...+. .+++++-. +.+...|+.+|+++++++|+.+ .|.
T Consensus 43 ~~~~~~e~~~~ii~~~~~~g~--~~v~~~GG----------------------EPll~~~~~~il~~~~~~g~~~--~i~ 96 (378)
T PRK05301 43 GAELSTEEWIRVLREARALGA--LQLHFSGG----------------------EPLLRKDLEELVAHARELGLYT--NLI 96 (378)
T ss_pred cCCCCHHHHHHHHHHHHHcCC--cEEEEECC----------------------ccCCchhHHHHHHHHHHcCCcE--EEE
Confidence 456889999999999988764 44444321 2334577999999999999865 466
Q ss_pred CCCch
Q 007722 272 SPGHT 276 (591)
Q Consensus 272 ~PGH~ 276 (591)
|=|..
T Consensus 97 TNG~l 101 (378)
T PRK05301 97 TSGVG 101 (378)
T ss_pred CCCcc
Confidence 66753
No 116
>PRK07337 aminotransferase; Validated
Probab=41.51 E-value=80 Score=33.80 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=21.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEEE
Q 007722 245 MQYSPDDVKKIVEFGLDHGVRVIP 268 (591)
Q Consensus 245 ~~YT~~ei~eiv~yA~~rgI~VIP 268 (591)
..+|.+|+++|++.|+++|+-||-
T Consensus 178 ~~~~~~~~~~i~~~a~~~~~~ii~ 201 (388)
T PRK07337 178 TSIAPDELRRIVEAVRARGGFTIV 201 (388)
T ss_pred cCcCHHHHHHHHHHHHHCCCEEEE
Confidence 468999999999999999987773
No 117
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=41.28 E-value=60 Score=28.86 Aligned_cols=98 Identities=12% Similarity=0.117 Sum_probs=59.4
Q ss_pred EEEEecChhhhhHHHHHHHHHhcCC-Cc--ccccceEEecCCCCCccc---ceeCCCCCCCChHHHHHHHHHHHHCCCcE
Q 007722 141 ANLTAETPWGAMRGLETFSQLVWGR-PS--RVPVGVYVWDDPIFPHRG---LLLDTSRNYYGVGDIMRTIYAMSANKMNV 214 (591)
Q Consensus 141 i~I~a~~~~G~~~g~~Tl~Ql~~~~-~~--~~p~~~~I~D~P~f~~RG---~mlD~aR~f~~~~~lk~~Id~ma~~KlN~ 214 (591)
|-|-|.+..---+|-+.+.+|...+ .. .-|..-+|...+.|+-=. --+|++=-+.|.+.+-.+++.+...+...
T Consensus 3 iAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~~~~~~~~~v~~~~~~g~~~ 82 (116)
T PF13380_consen 3 IAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCVPPDKVPEIVDEAAALGVKA 82 (116)
T ss_dssp EEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-S-HHHHHHHHHHHHHHT-SE
T ss_pred EEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEECcEEeeccccCCCCCCCEEEEEcCHHHHHHHHHHHHHcCCCE
Confidence 5566655554446766777766522 11 123344555555554333 35788888899999999999999999998
Q ss_pred EEEEecCCCCCcccCCCCCCcccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEE
Q 007722 215 FHWHITDSPSFPLNLPSEPGLAAKGSYGDDMQYSPDDVKKIVEFGLDHGVRVI 267 (591)
Q Consensus 215 lhlHltDd~~frle~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VI 267 (591)
+.++.. ++-++++++|++.||+|+
T Consensus 83 v~~~~g-----------------------------~~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 83 VWLQPG-----------------------------AESEELIEAAREAGIRVI 106 (116)
T ss_dssp EEE-TT-----------------------------S--HHHHHHHHHTT-EEE
T ss_pred EEEEcc-----------------------------hHHHHHHHHHHHcCCEEE
Confidence 887642 344678999999999999
No 118
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=40.90 E-value=29 Score=35.36 Aligned_cols=36 Identities=14% Similarity=0.299 Sum_probs=28.3
Q ss_pred CCCHHHHHHHHHHHHhcCCEEEEccCCCCchhhHHH
Q 007722 246 QYSPDDVKKIVEFGLDHGVRVIPEIDSPGHTGSWAE 281 (591)
Q Consensus 246 ~YT~~ei~eiv~yA~~rgI~VIPEID~PGH~~a~~~ 281 (591)
.++++++++++++|.+.|++++-|+-...-....+.
T Consensus 134 ~L~~~~l~~l~~~a~~lGle~LVEVh~~~El~~a~~ 169 (247)
T PRK13957 134 ILTPSQIKSFLKHASSLGMDVLVEVHTEDEAKLALD 169 (247)
T ss_pred hCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHh
Confidence 468899999999999999999999955544433333
No 119
>TIGR03586 PseI pseudaminic acid synthase.
Probab=40.66 E-value=92 Score=33.16 Aligned_cols=77 Identities=13% Similarity=0.124 Sum_probs=49.7
Q ss_pred ChHHHHHHHHHHHHCCCc--EEEEEecCCCCCcccCCCCCC--cccCCCCCC--------CCCCCHHHHHHHHHHHHhcC
Q 007722 196 GVGDIMRTIYAMSANKMN--VFHWHITDSPSFPLNLPSEPG--LAAKGSYGD--------DMQYSPDDVKKIVEFGLDHG 263 (591)
Q Consensus 196 ~~~~lk~~Id~ma~~KlN--~lhlHltDd~~frle~~~~P~--Lt~~ga~~~--------~~~YT~~ei~eiv~yA~~rg 263 (591)
+++..|++||..+..+.+ .||.+-.|. +-. +..++ ....+.|.. .-.++.++.++|.+||+++|
T Consensus 15 ~~~~A~~lI~~A~~aGAdavKFQ~~~~~~--l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~G 90 (327)
T TIGR03586 15 SLERALAMIEAAKAAGADAIKLQTYTPDT--ITL--DSDRPEFIIKGGLWDGRTLYDLYQEAHTPWEWHKELFERAKELG 90 (327)
T ss_pred hHHHHHHHHHHHHHhCCCEEEeeeccHHH--hhc--cccccccccccCCcCCccHHHHHHHhhCCHHHHHHHHHHHHHhC
Confidence 689999999999999998 466554433 111 11110 001122311 12468899999999999999
Q ss_pred CEEEEccCCCCch
Q 007722 264 VRVIPEIDSPGHT 276 (591)
Q Consensus 264 I~VIPEID~PGH~ 276 (591)
|.++-++=-..+.
T Consensus 91 i~~~stpfd~~sv 103 (327)
T TIGR03586 91 LTIFSSPFDETAV 103 (327)
T ss_pred CcEEEccCCHHHH
Confidence 9999876444444
No 120
>PRK05839 hypothetical protein; Provisional
Probab=40.47 E-value=1.6e+02 Score=31.42 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=21.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEE
Q 007722 245 MQYSPDDVKKIVEFGLDHGVRVI 267 (591)
Q Consensus 245 ~~YT~~ei~eiv~yA~~rgI~VI 267 (591)
..|+.+++++|++.|+++||-||
T Consensus 170 ~~~s~~~l~~i~~~~~~~~~~ii 192 (374)
T PRK05839 170 RTLSLEELIEWVKLALKHDFILI 192 (374)
T ss_pred cccCHHHHHHHHHHHHHcCCEEE
Confidence 47899999999999999999888
No 121
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=40.40 E-value=36 Score=33.84 Aligned_cols=78 Identities=13% Similarity=0.265 Sum_probs=57.5
Q ss_pred CChHHHHHHHHHHHHCCCcEEEEEecCCCCCcc--cC-CCCCCcccCCCCCCCCCCCHHHH-----------------HH
Q 007722 195 YGVGDIMRTIYAMSANKMNVFHWHITDSPSFPL--NL-PSEPGLAAKGSYGDDMQYSPDDV-----------------KK 254 (591)
Q Consensus 195 ~~~~~lk~~Id~ma~~KlN~lhlHltDd~~frl--e~-~~~P~Lt~~ga~~~~~~YT~~ei-----------------~e 254 (591)
.+.+...++++.+...++..+.+-++..++.+. ++ +.||++. .|+ +...|.+|. .+
T Consensus 24 ~~~~~a~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~~~p~~~-IGA---GTVl~~~~a~~a~~aGA~FivsP~~~~~ 99 (212)
T PRK05718 24 NKLEDAVPLAKALVAGGLPVLEVTLRTPAALEAIRLIAKEVPEAL-IGA---GTVLNPEQLAQAIEAGAQFIVSPGLTPP 99 (212)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHHCCCCE-EEE---eeccCHHHHHHHHHcCCCEEECCCCCHH
Confidence 467899999999999999999999887765542 11 3577653 443 223444443 37
Q ss_pred HHHHHHhcCCEEEEccCCCCch
Q 007722 255 IVEFGLDHGVRVIPEIDSPGHT 276 (591)
Q Consensus 255 iv~yA~~rgI~VIPEID~PGH~ 276 (591)
++++|++++|.+||.+-+|.-.
T Consensus 100 vi~~a~~~~i~~iPG~~TptEi 121 (212)
T PRK05718 100 LLKAAQEGPIPLIPGVSTPSEL 121 (212)
T ss_pred HHHHHHHcCCCEeCCCCCHHHH
Confidence 8999999999999999999643
No 122
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=40.31 E-value=85 Score=32.13 Aligned_cols=46 Identities=15% Similarity=0.377 Sum_probs=38.9
Q ss_pred HHHHHHHCCCcEEEEEecCCCCCcccCCCCCCcccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEEccCCC
Q 007722 203 TIYAMSANKMNVFHWHITDSPSFPLNLPSEPGLAAKGSYGDDMQYSPDDVKKIVEFGLDHGVRVIPEIDSP 273 (591)
Q Consensus 203 ~Id~ma~~KlN~lhlHltDd~~frle~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPEID~P 273 (591)
+|+....++.+.+++-.++ ++.+++++++++|+++|++++-|+...
T Consensus 125 qi~~a~~~GAD~VlLi~~~-------------------------l~~~~l~~li~~a~~lGl~~lvevh~~ 170 (260)
T PRK00278 125 QIYEARAAGADAILLIVAA-------------------------LDDEQLKELLDYAHSLGLDVLVEVHDE 170 (260)
T ss_pred HHHHHHHcCCCEEEEEecc-------------------------CCHHHHHHHHHHHHHcCCeEEEEeCCH
Confidence 6899999999999987643 356899999999999999999888444
No 123
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=39.04 E-value=89 Score=35.15 Aligned_cols=23 Identities=17% Similarity=0.439 Sum_probs=20.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEE
Q 007722 245 MQYSPDDVKKIVEFGLDHGVRVI 267 (591)
Q Consensus 245 ~~YT~~ei~eiv~yA~~rgI~VI 267 (591)
..|+.+++++|++.|+++++-||
T Consensus 296 ~v~~~~~l~~i~~~a~~~~~~ii 318 (517)
T PRK13355 296 ALYPREVLQQIVDIAREHQLIIF 318 (517)
T ss_pred cCcCHHHHHHHHHHHHHcCcEEE
Confidence 46899999999999999998776
No 124
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=38.65 E-value=84 Score=32.75 Aligned_cols=59 Identities=15% Similarity=0.214 Sum_probs=37.5
Q ss_pred CCCChHHHHHHHHHHHHCCCcEEEEEecCCCCCcccCCCCCCcccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEE
Q 007722 193 NYYGVGDIMRTIYAMSANKMNVFHWHITDSPSFPLNLPSEPGLAAKGSYGDDMQYSPDDVKKIVEFGLDHGVRVI 267 (591)
Q Consensus 193 ~f~~~~~lk~~Id~ma~~KlN~lhlHltDd~~frle~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VI 267 (591)
..++++.|++.++....+.-+.=-+.++-. ++. ..+..||.+|+++|.++|+++||.|.
T Consensus 104 G~l~~~~l~~~~~~~~~h~~~~~~v~le~t-------------~~~---~GG~~~s~~el~ai~~~a~~~gl~lh 162 (290)
T PF01212_consen 104 GKLTPEDLEAAIEEHGAHHPQPAVVSLENT-------------TEL---AGGTVYSLEELRAISELAREHGLPLH 162 (290)
T ss_dssp TBB-HHHHHHHHHHHTGTSGGEEEEEEESS-------------BTT---TTSB---HHHHHHHHHHHHHHT-EEE
T ss_pred CCCCHHHHHHHhhhccccCCCccEEEEEec-------------CcC---CCCeeCCHHHHHHHHHHHHhCceEEE
Confidence 678999999999888774444333344321 111 11247999999999999999999887
No 125
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=38.64 E-value=39 Score=27.89 Aligned_cols=37 Identities=16% Similarity=0.399 Sum_probs=26.5
Q ss_pred CCHHHHHHHHHHHHhcCCEEEEccCCCCchhhHHHhCchh
Q 007722 247 YSPDDVKKIVEFGLDHGVRVIPEIDSPGHTGSWAEAYPEI 286 (591)
Q Consensus 247 YT~~ei~eiv~yA~~rgI~VIPEID~PGH~~a~~~~~pel 286 (591)
+...=+++.++||+++|..|+|.= .=+..+++.+|++
T Consensus 39 ia~~L~~~~l~~a~~~~~kv~p~C---~y~~~~~~~hpey 75 (78)
T PF14542_consen 39 IAKKLVEAALDYARENGLKVVPTC---SYVAKYFRRHPEY 75 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEETS---HHHHHHHHH-GGG
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEC---HHHHHHHHhCccc
Confidence 467789999999999999999862 1233456678875
No 126
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=38.54 E-value=89 Score=33.24 Aligned_cols=59 Identities=12% Similarity=0.177 Sum_probs=42.1
Q ss_pred CCCCChHHHHHHHHHHHHCCCcEEEEEecCCCCCcccCCCCCCcccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEEccC
Q 007722 192 RNYYGVGDIMRTIYAMSANKMNVFHWHITDSPSFPLNLPSEPGLAAKGSYGDDMQYSPDDVKKIVEFGLDHGVRVIPEID 271 (591)
Q Consensus 192 R~f~~~~~lk~~Id~ma~~KlN~lhlHltDd~~frle~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPEID 271 (591)
+..++.+.++++|+.+...+.-. ++++-. -| .-..|+.+|++||+++|+.+ .|.
T Consensus 34 ~~~l~~e~~~~ii~~~~~~g~~~--v~~~GG---------EP-------------ll~~~~~~ii~~~~~~g~~~--~l~ 87 (358)
T TIGR02109 34 KAELTTEEWTDVLTQAAELGVLQ--LHFSGG---------EP-------------LARPDLVELVAHARRLGLYT--NLI 87 (358)
T ss_pred cCCCCHHHHHHHHHHHHhcCCcE--EEEeCc---------cc-------------cccccHHHHHHHHHHcCCeE--EEE
Confidence 45688999999999998876544 444321 22 23467899999999999865 466
Q ss_pred CCCch
Q 007722 272 SPGHT 276 (591)
Q Consensus 272 ~PGH~ 276 (591)
|-|..
T Consensus 88 TNG~l 92 (358)
T TIGR02109 88 TSGVG 92 (358)
T ss_pred eCCcc
Confidence 77764
No 127
>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]
Probab=37.67 E-value=1.5e+02 Score=32.60 Aligned_cols=66 Identities=21% Similarity=0.355 Sum_probs=50.2
Q ss_pred ceeCCCCCC-CChHHHHHHHHHHHHCCCcEEEEEecCCCCCcccCCCCCCcccCCCCCCCCCCCHHHHHHHHHHHHhcCC
Q 007722 186 LLLDTSRNY-YGVGDIMRTIYAMSANKMNVFHWHITDSPSFPLNLPSEPGLAAKGSYGDDMQYSPDDVKKIVEFGLDHGV 264 (591)
Q Consensus 186 ~mlD~aR~f-~~~~~lk~~Id~ma~~KlN~lhlHltDd~~frle~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI 264 (591)
++++.+-+| ++++.+..-.........++=-+-++. |+-|- | ..||++++..|+.+|.+++|
T Consensus 198 v~c~Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitN--------PsNPL----G-----~~~~~e~L~~ll~Fa~~kni 260 (471)
T KOG0256|consen 198 VHCSSSNGFQITVEALEAALNQARKLGLKVKGVLITN--------PSNPL----G-----TTLSPEELISLLNFASRKNI 260 (471)
T ss_pred EEeecCCCccccHHHHHHHHHHHHHhCCceeEEEEeC--------CCCCC----C-----CccCHHHHHHHHHHHhhcce
Confidence 466666676 677888777777777777776666664 44442 2 36899999999999999999
Q ss_pred EEEE
Q 007722 265 RVIP 268 (591)
Q Consensus 265 ~VIP 268 (591)
.||-
T Consensus 261 HvI~ 264 (471)
T KOG0256|consen 261 HVIS 264 (471)
T ss_pred EEEe
Confidence 9984
No 128
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=37.66 E-value=2.6e+02 Score=29.44 Aligned_cols=122 Identities=15% Similarity=0.205 Sum_probs=68.8
Q ss_pred CCCChHHHHHHHHHHHHCCCcEEEEEecCCCCCcccCCCCCCcccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEEccCC
Q 007722 193 NYYGVGDIMRTIYAMSANKMNVFHWHITDSPSFPLNLPSEPGLAAKGSYGDDMQYSPDDVKKIVEFGLDHGVRVIPEIDS 272 (591)
Q Consensus 193 ~f~~~~~lk~~Id~ma~~KlN~lhlHltDd~~frle~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPEID~ 272 (591)
++.+-+.++++++.+..+++-.=.+++..+ |- +.+-..+ |.+ ..| -|.+++++..+++||+|++-|+
T Consensus 19 ~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~--~~---~~~~~f~----~d~-~~F--Pdp~~~i~~l~~~g~k~~~~~~- 85 (317)
T cd06600 19 SYYPQDKVVEVVDIMQKEGFPYDVVFLDIH--YM---DSYRLFT----WDP-YRF--PEPKKLIDELHKRNVKLVTIVD- 85 (317)
T ss_pred CCCCHHHHHHHHHHHHHcCCCcceEEEChh--hh---CCCCcee----ech-hcC--CCHHHHHHHHHHCCCEEEEEee-
Confidence 456789999999999999998666666432 20 1111111 111 123 3678999999999999997764
Q ss_pred CCch-----hhHHHhC-chhhhhcccccCcCCCCCCcccccCCC-CCcCCCCChhHHHHHHHHHHHHHH
Q 007722 273 PGHT-----GSWAEAY-PEIVTCANMFWWPAESKGEDKLAAEPG-TGQLNPLNPKTYQVFKNVISDVVK 334 (591)
Q Consensus 273 PGH~-----~a~~~~~-pel~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~~~~~t~~fl~~ll~Ev~~ 334 (591)
|+-. ..+.+.. ..+. +.. ++++++. ....+. ...+|.+||++.+...+.++++..
T Consensus 86 P~i~~~~~~~~~~~~~~~~~~-v~~----~~g~~~~--~~~w~G~~~~~Dftnp~a~~ww~~~~~~~~~ 147 (317)
T cd06600 86 PGIRVDQNYSPFLSGMDKGKF-CEI----ESGELFV--GKMWPGTTVYPDFTNPDTREWWAGLFSEWLN 147 (317)
T ss_pred ccccCCCCChHHHHHHHCCEE-EEC----CCCCeEE--EeecCCCccccCCCChHHHHHHHHHHHHHhh
Confidence 2211 1111111 0110 100 0111100 001111 235899999999999999998763
No 129
>PRK01060 endonuclease IV; Provisional
Probab=37.42 E-value=1.3e+02 Score=30.66 Aligned_cols=59 Identities=7% Similarity=0.080 Sum_probs=44.9
Q ss_pred cceeCCCCCCCChHHHHHHHHHHHHCCCcEEEEEecCCCCCcccCCCCCCcccCCCCCCCCCCCHHHHHHHHHHHHhcCC
Q 007722 185 GLLLDTSRNYYGVGDIMRTIYAMSANKMNVFHWHITDSPSFPLNLPSEPGLAAKGSYGDDMQYSPDDVKKIVEFGLDHGV 264 (591)
Q Consensus 185 G~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lhlHltDd~~frle~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI 264 (591)
|+|..+.+. +.+.|+.++..++..+++-+.....|. ...+|.++++++-+.++++||
T Consensus 5 g~~~~~~~~------~~~~l~~~~~~G~d~vEl~~~~p~~~~-----------------~~~~~~~~~~~lk~~~~~~gl 61 (281)
T PRK01060 5 GAHVSAAGG------LEGAVAEAAEIGANAFMIFTGNPQQWK-----------------RKPLEELNIEAFKAACEKYGI 61 (281)
T ss_pred EEeeecCCC------HHHHHHHHHHcCCCEEEEECCCCCCCc-----------------CCCCCHHHHHHHHHHHHHcCC
Confidence 555555443 788999999999999999775432221 124699999999999999999
Q ss_pred EE
Q 007722 265 RV 266 (591)
Q Consensus 265 ~V 266 (591)
++
T Consensus 62 ~~ 63 (281)
T PRK01060 62 SP 63 (281)
T ss_pred CC
Confidence 95
No 130
>PLN02450 1-aminocyclopropane-1-carboxylate synthase
Probab=36.38 E-value=1.2e+02 Score=33.69 Aligned_cols=23 Identities=13% Similarity=0.315 Sum_probs=21.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEE
Q 007722 245 MQYSPDDVKKIVEFGLDHGVRVI 267 (591)
Q Consensus 245 ~~YT~~ei~eiv~yA~~rgI~VI 267 (591)
..|+.+++++|++.|+++++-||
T Consensus 206 ~~~s~e~l~~ll~~a~~~~~~iI 228 (468)
T PLN02450 206 TTTTRTELNLLVDFITAKNIHLI 228 (468)
T ss_pred cccCHHHHHHHHHHHHHCCcEEE
Confidence 46999999999999999999887
No 131
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=34.79 E-value=1.9e+02 Score=30.60 Aligned_cols=126 Identities=13% Similarity=0.172 Sum_probs=68.8
Q ss_pred CCCChHHHHHHHHHHHHCCCcEEEEEecCCCCCcccCCCCCCcccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEEccCC
Q 007722 193 NYYGVGDIMRTIYAMSANKMNVFHWHITDSPSFPLNLPSEPGLAAKGSYGDDMQYSPDDVKKIVEFGLDHGVRVIPEIDS 272 (591)
Q Consensus 193 ~f~~~~~lk~~Id~ma~~KlN~lhlHltDd~~frle~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPEID~ 272 (591)
.+.+-+.++++++.+..+++-.=.+++..+ |- ..+..++ |.+ ..|. |.+++++..+++|+++++-++-
T Consensus 19 ~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~--~~---~~~~~f~----~d~-~~fP--dp~~m~~~l~~~g~~~~~~~~P 86 (339)
T cd06604 19 SYYPEEEVREIADEFRERDIPCDAIYLDID--YM---DGYRVFT----WDK-ERFP--DPKELIKELHEQGFKVVTIIDP 86 (339)
T ss_pred CCCCHHHHHHHHHHHHHhCCCcceEEECch--hh---CCCCcee----ecc-ccCC--CHHHHHHHHHHCCCEEEEEEeC
Confidence 456789999999999999998655555432 21 1222221 211 2232 5689999999999999976642
Q ss_pred CCchhhHHHhCchhhhhcccccC--cCCCCCCcccccCC-CCCcCCCCChhHHHHHHHHHHHHHH
Q 007722 273 PGHTGSWAEAYPEIVTCANMFWW--PAESKGEDKLAAEP-GTGQLNPLNPKTYQVFKNVISDVVK 334 (591)
Q Consensus 273 PGH~~a~~~~~pel~~~~~~~~~--~~~~~~~~~~~~~~-~~~~L~~~~~~t~~fl~~ll~Ev~~ 334 (591)
-=....-...|.|... ..+.+ ++++.+.. ...+ ....+|.+||++.++..++++++.+
T Consensus 87 ~v~~~~~~~~~~e~~~--~g~~v~~~~g~~~~~--~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~ 147 (339)
T cd06604 87 GVKVDPGYDVYEEGLE--NDYFVKDPDGELYIG--RVWPGLSAFPDFTNPKVREWWGSLYKKFVD 147 (339)
T ss_pred ceeCCCCChHHHHHHH--CCeEEECCCCCEEEE--EecCCCccccCCCChHHHHHHHHHHHHHhh
Confidence 1111000001111110 00000 01110000 0011 2345899999999999999988764
No 132
>PLN00175 aminotransferase family protein; Provisional
Probab=34.78 E-value=1.2e+02 Score=33.03 Aligned_cols=23 Identities=9% Similarity=0.264 Sum_probs=21.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEE
Q 007722 245 MQYSPDDVKKIVEFGLDHGVRVI 267 (591)
Q Consensus 245 ~~YT~~ei~eiv~yA~~rgI~VI 267 (591)
..||.+++++|++.|+++++-||
T Consensus 202 ~~~s~~~l~~l~~~a~~~~~~ii 224 (413)
T PLN00175 202 KMFTREELELIASLCKENDVLAF 224 (413)
T ss_pred cCCCHHHHHHHHHHHHHcCcEEE
Confidence 46899999999999999999777
No 133
>PRK08363 alanine aminotransferase; Validated
Probab=34.44 E-value=96 Score=33.34 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=20.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEE
Q 007722 245 MQYSPDDVKKIVEFGLDHGVRVI 267 (591)
Q Consensus 245 ~~YT~~ei~eiv~yA~~rgI~VI 267 (591)
..++.+++++|++.|+++|+-||
T Consensus 181 ~~~~~~~~~~l~~~a~~~~~~li 203 (398)
T PRK08363 181 ALYEKKTLKEILDIAGEHDLPVI 203 (398)
T ss_pred cCcCHHHHHHHHHHHHHcCeEEE
Confidence 36899999999999999998777
No 134
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=34.41 E-value=94 Score=33.43 Aligned_cols=23 Identities=13% Similarity=0.284 Sum_probs=20.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEE
Q 007722 245 MQYSPDDVKKIVEFGLDHGVRVI 267 (591)
Q Consensus 245 ~~YT~~ei~eiv~yA~~rgI~VI 267 (591)
..++.+++++|++.|+++|+-||
T Consensus 183 ~~~~~~~~~~l~~~a~~~~~~ii 205 (401)
T TIGR01264 183 SVFSRQHLEEILAVAERQCLPII 205 (401)
T ss_pred CCCCHHHHHHHHHHHHHCCCEEE
Confidence 36899999999999999999877
No 135
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=33.86 E-value=1.6e+02 Score=31.17 Aligned_cols=79 Identities=18% Similarity=0.318 Sum_probs=47.4
Q ss_pred EecCCCCCcccceeCCCCCCCChHHHHHHHHHHHHCCCcEEEEEecCCCCCcccCCCCCCcccCCCCCCCCCCC-HHHHH
Q 007722 175 VWDDPIFPHRGLLLDTSRNYYGVGDIMRTIYAMSANKMNVFHWHITDSPSFPLNLPSEPGLAAKGSYGDDMQYS-PDDVK 253 (591)
Q Consensus 175 I~D~P~f~~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lhlHltDd~~frle~~~~P~Lt~~ga~~~~~~YT-~~ei~ 253 (591)
|.+.|-+.+=|-+ .-.| +|.+...+.++.|...++|++..++- |.+.-+. .|.|. +| ..|++
T Consensus 4 ~~g~~~~~~~Ge~-hy~r--~p~~~W~~~l~k~ka~G~n~v~~yv~----W~~he~~------~g~~d----f~g~~dl~ 66 (319)
T PF01301_consen 4 IDGKPFFILSGEF-HYFR--IPPEYWRDRLQKMKAAGLNTVSTYVP----WNLHEPE------EGQFD----FTGNRDLD 66 (319)
T ss_dssp ETTEEE-EEEEEE--GGG--S-GGGHHHHHHHHHHTT-SEEEEE------HHHHSSB------TTB-------SGGG-HH
T ss_pred ECCEEEEEEEeee-cccc--CChhHHHHHHHHHHhCCcceEEEecc----ccccCCC------CCccc----ccchhhHH
Confidence 4444545444443 1112 45788899999999999999999873 5432221 23332 12 47999
Q ss_pred HHHHHHHhcCCEEEEcc
Q 007722 254 KIVEFGLDHGVRVIPEI 270 (591)
Q Consensus 254 eiv~yA~~rgI~VIPEI 270 (591)
.+++.|+++|+-||--+
T Consensus 67 ~f~~~a~~~gl~vilrp 83 (319)
T PF01301_consen 67 RFLDLAQENGLYVILRP 83 (319)
T ss_dssp HHHHHHHHTT-EEEEEE
T ss_pred HHHHHHHHcCcEEEecc
Confidence 99999999999998653
No 136
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=33.67 E-value=2.1e+02 Score=30.42 Aligned_cols=125 Identities=14% Similarity=0.102 Sum_probs=71.9
Q ss_pred CCCChHHHHHHHHHHHHCCCcEEEEEecCCCCCcccCCCCCCcccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEEccCC
Q 007722 193 NYYGVGDIMRTIYAMSANKMNVFHWHITDSPSFPLNLPSEPGLAAKGSYGDDMQYSPDDVKKIVEFGLDHGVRVIPEIDS 272 (591)
Q Consensus 193 ~f~~~~~lk~~Id~ma~~KlN~lhlHltDd~~frle~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPEID~ 272 (591)
.+.+-+.++++++.+...++..=.+++..+ |- ..+-.++ |. ...| -|.+.+++.-+++||+|++-++
T Consensus 19 ~y~~~~ev~~~~~~~~~~~iP~d~i~lD~~--~~---~~~~~f~----~d-~~~F--Pdp~~mi~~L~~~G~k~~~~~~- 85 (339)
T cd06603 19 NYKDQEDVKEVDAGFDEHDIPYDVIWLDIE--HT---DGKRYFT----WD-KKKF--PDPEKMQEKLASKGRKLVTIVD- 85 (339)
T ss_pred CCCCHHHHHHHHHHHHHcCCCceEEEEChH--Hh---CCCCceE----eC-cccC--CCHHHHHHHHHHCCCEEEEEec-
Confidence 566899999999999999998666666432 10 1111111 11 1223 2678899999999999999886
Q ss_pred CCchhh-HHHhCchhhhhcccccC--cCCCCCCcccccCC-CCCcCCCCChhHHHHHHHHHHHHHH
Q 007722 273 PGHTGS-WAEAYPEIVTCANMFWW--PAESKGEDKLAAEP-GTGQLNPLNPKTYQVFKNVISDVVK 334 (591)
Q Consensus 273 PGH~~a-~~~~~pel~~~~~~~~~--~~~~~~~~~~~~~~-~~~~L~~~~~~t~~fl~~ll~Ev~~ 334 (591)
|+-... -...|.+... ..+.. +++.++. ....+ ....+|.+||++.+...+.++++..
T Consensus 86 P~v~~~~~~~~y~e~~~--~g~~vk~~~g~~~~--~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~ 147 (339)
T cd06603 86 PHIKRDDGYYVYKEAKD--KGYLVKNSDGGDFE--GWCWPGSSSWPDFLNPEVRDWWASLFSYDKY 147 (339)
T ss_pred CceecCCCCHHHHHHHH--CCeEEECCCCCEEE--EEECCCCcCCccCCChhHHHHHHHHHHHHhh
Confidence 432210 0011222211 00000 1111110 00011 2357899999999999999998865
No 137
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=32.69 E-value=56 Score=33.39 Aligned_cols=61 Identities=13% Similarity=0.077 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHHHCCCcEEEEEecCCCCCcccCCCCCCcccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEEcc
Q 007722 197 VGDIMRTIYAMSANKMNVFHWHITDSPSFPLNLPSEPGLAAKGSYGDDMQYSPDDVKKIVEFGLDHGVRVIPEI 270 (591)
Q Consensus 197 ~~~lk~~Id~ma~~KlN~lhlHltDd~~frle~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPEI 270 (591)
++.+++.|+.++..+.+.+.++-.+ . .+...... .+ ....+-+++++++|+++||+|.-|-
T Consensus 93 ~~~~~~~i~~a~~lG~~~v~~~~~~-----~---~~~~~~~~-~~----~~~~~~l~~l~~~A~~~Gv~l~lE~ 153 (279)
T TIGR00542 93 LEIMEKAIQLARDLGIRTIQLAGYD-----V---YYEEHDEE-TR----RRFREGLKEAVELAARAQVTLAVEI 153 (279)
T ss_pred HHHHHHHHHHHHHhCCCEEEecCcc-----c---ccCcCCHH-HH----HHHHHHHHHHHHHHHHcCCEEEEee
Confidence 5779999999999999999765311 1 00000000 01 1245789999999999999999984
No 138
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=32.62 E-value=49 Score=29.77 Aligned_cols=28 Identities=36% Similarity=0.535 Sum_probs=23.9
Q ss_pred CHHHHHHHHHHHHhcCCEEEEccCCCCchh
Q 007722 248 SPDDVKKIVEFGLDHGVRVIPEIDSPGHTG 277 (591)
Q Consensus 248 T~~ei~eiv~yA~~rgI~VIPEID~PGH~~ 277 (591)
|.+|+++++++|+++++.|.+- .-||+.
T Consensus 9 s~~ev~~~v~~a~~~~~~v~~~--g~G~~~ 36 (139)
T PF01565_consen 9 SVEEVQAIVKFANENGVPVRVR--GGGHSW 36 (139)
T ss_dssp SHHHHHHHHHHHHHTTSEEEEE--SSSTTS
T ss_pred CHHHHHHHHHHHHHcCCcEEEE--cCCCCc
Confidence 7899999999999999999976 356654
No 139
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=32.31 E-value=1.1e+02 Score=33.74 Aligned_cols=73 Identities=14% Similarity=0.164 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHHHCCCcEEEEEecCCC---CCcccCCCCCCcccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEEccCCC
Q 007722 197 VGDIMRTIYAMSANKMNVFHWHITDSP---SFPLNLPSEPGLAAKGSYGDDMQYSPDDVKKIVEFGLDHGVRVIPEIDSP 273 (591)
Q Consensus 197 ~~~lk~~Id~ma~~KlN~lhlHltDd~---~frle~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPEID~P 273 (591)
+.-|.+-+|.+..++++.+++-..-.. --++.+..|-.+.. .+=|.+|++++++-|.+|||.||..+- .
T Consensus 28 l~Gi~~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~-------~~Gt~~d~~~li~~~H~~gi~vi~D~V-~ 99 (505)
T COG0366 28 LKGITEKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDP-------HFGTEEDFKELVEEAHKRGIKVILDLV-F 99 (505)
T ss_pred HHhHHHhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCc-------ccCCHHHHHHHHHHHHHCCCEEEEEec-c
Confidence 455568889999999999987543211 01111122222211 223999999999999999999998873 5
Q ss_pred Cchh
Q 007722 274 GHTG 277 (591)
Q Consensus 274 GH~~ 277 (591)
-|+.
T Consensus 100 NH~s 103 (505)
T COG0366 100 NHTS 103 (505)
T ss_pred CcCC
Confidence 5654
No 140
>TIGR01866 cas_Csn2 CRISPR-associated protein, Csn2 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas loci. The species range so far for this subtype is animal pathogens and commensals only. This protein is present in some but not all NMENI CRISPR/Cas loci.
Probab=32.05 E-value=1e+02 Score=30.89 Aligned_cols=64 Identities=9% Similarity=0.128 Sum_probs=52.0
Q ss_pred CCcccceeCCCCCCCChHHHHHHHHHHHHCCCcEEEEEecCCCCCcccCCCCCCcccCCCCCCCCCCCHHHHHHHHHHHH
Q 007722 181 FPHRGLLLDTSRNYYGVGDIMRTIYAMSANKMNVFHWHITDSPSFPLNLPSEPGLAAKGSYGDDMQYSPDDVKKIVEFGL 260 (591)
Q Consensus 181 f~~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lhlHltDd~~frle~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~ 260 (591)
|..=|+++|+...- +.+-+-++++......-+.+-.-.. + +.|+|++|+.+|.+|+.
T Consensus 132 ~Ka~gik~e~~~~~-~~eki~~~lki~~~l~~kki~ifvN--------------l--------~~YLt~eei~el~~~i~ 188 (216)
T TIGR01866 132 IKALGIKFETQSDT-LLEKCLEILQIFKELTKKKLFIFIN--------------S--------GAFLTKDELAELQKFIS 188 (216)
T ss_pred HHhcCeeeeeccCc-HHHHHHHHHHHHHHHhcCcEEEEEc--------------H--------HHhCCHHHHHHHHHHHH
Confidence 56789999998876 8888888998888887776654331 1 24789999999999999
Q ss_pred hcCCEEE
Q 007722 261 DHGVRVI 267 (591)
Q Consensus 261 ~rgI~VI 267 (591)
...+.|+
T Consensus 189 ~~~~~vl 195 (216)
T TIGR01866 189 YTKLTVL 195 (216)
T ss_pred HhcccEE
Confidence 9999988
No 141
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=31.86 E-value=82 Score=32.14 Aligned_cols=82 Identities=17% Similarity=0.296 Sum_probs=53.5
Q ss_pred CCCCcccceeCCCCCCCChHHHHHHHHHHHHCCCcEEEEEecCCCCCcccCCCCCCcccCCCCCCCCCCCHHHHHHHHHH
Q 007722 179 PIFPHRGLLLDTSRNYYGVGDIMRTIYAMSANKMNVFHWHITDSPSFPLNLPSEPGLAAKGSYGDDMQYSPDDVKKIVEF 258 (591)
Q Consensus 179 P~f~~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lhlHltDd~~frle~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~y 258 (591)
|++.+ |++.-.-+ +.+-+.++++++.+..+++..=.+++.++ |-- .+-... =.|. ...| .+.+++++.
T Consensus 7 P~wa~-G~~~~~~~-~~~~~~v~~~~~~~~~~~iP~d~~~lD~~--~~~---~~~~f~--~~~d-~~~F--pdp~~~i~~ 74 (265)
T cd06589 7 PKWAF-GYWLSRYG-YGDQDKVLEVIDGMRENDIPLDGFVLDDD--YTD---GYGDFT--FDWD-AGKF--PNPKSMIDE 74 (265)
T ss_pred cHHHH-HHHHhcCC-CCCHHHHHHHHHHHHHcCCCccEEEECcc--ccc---CCceee--eecC-hhhC--CCHHHHHHH
Confidence 44444 66643322 57889999999999999999777777654 321 111110 0011 1123 457899999
Q ss_pred HHhcCCEEEEccCC
Q 007722 259 GLDHGVRVIPEIDS 272 (591)
Q Consensus 259 A~~rgI~VIPEID~ 272 (591)
.+++|++|++-|+-
T Consensus 75 l~~~g~~~~~~~~P 88 (265)
T cd06589 75 LHDNGVKLVLWIDP 88 (265)
T ss_pred HHHCCCEEEEEeCh
Confidence 99999999988853
No 142
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=31.84 E-value=6.5e+02 Score=26.70 Aligned_cols=120 Identities=18% Similarity=0.270 Sum_probs=71.4
Q ss_pred ceEEecCCCCCcccc-eeCC-----CCCC-------------CChHHHHHHHHHHHHCCCcEEEEEecCCCCCcccCCCC
Q 007722 172 GVYVWDDPIFPHRGL-LLDT-----SRNY-------------YGVGDIMRTIYAMSANKMNVFHWHITDSPSFPLNLPSE 232 (591)
Q Consensus 172 ~~~I~D~P~f~~RG~-mlD~-----aR~f-------------~~~~~lk~~Id~ma~~KlN~lhlHltDd~~frle~~~~ 232 (591)
.+.+.+.|+.+.|-+ +.|- =|.| ...+.++++-+.+|..++|-.-+--....+.
T Consensus 12 ~~~~~~~P~~~~R~lNhWDN~dgsiERGYaG~Sif~~~~~~~~~~~R~~~YARllASiGINgvvlNNVNa~~~------- 84 (328)
T PF07488_consen 12 GLDIVENPKAPLRMLNHWDNLDGSIERGYAGKSIFFWDGLPRRDLTRYRDYARLLASIGINGVVLNNVNANPK------- 84 (328)
T ss_dssp T-EEEE--SSSEEEEE--B-TTS-BTT--SSS-SSEETTEETS--HHHHHHHHHHHHTT--EEE-S-SS--CG-------
T ss_pred CCccccCCCcceeecccccCCCCceecccCcccccccCCCcccchhHHHHHHHHHhhcCCceEEecccccChh-------
Confidence 678999999999866 2332 2222 1246788889999999999988654433221
Q ss_pred CCcccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEEccCCCCchhhHHHhCchhhhhcccccCcCCCCCCcccccCCCCC
Q 007722 233 PGLAAKGSYGDDMQYSPDDVKKIVEFGLDHGVRVIPEIDSPGHTGSWAEAYPEIVTCANMFWWPAESKGEDKLAAEPGTG 312 (591)
Q Consensus 233 P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPEID~PGH~~a~~~~~pel~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (591)
.|+. . --++++.|.+-.+.+||+|--.++.-.-. +|. .-.
T Consensus 85 -~Lt~-------~--~l~~v~~lAdvfRpYGIkv~LSvnFasP~--------~lg----------------------gL~ 124 (328)
T PF07488_consen 85 -LLTP-------E--YLDKVARLADVFRPYGIKVYLSVNFASPI--------ELG----------------------GLP 124 (328)
T ss_dssp -GGST-------T--THHHHHHHHHHHHHTT-EEEEEE-TTHHH--------HTT----------------------S-S
T ss_pred -hcCH-------H--HHHHHHHHHHHHhhcCCEEEEEeeccCCc--------ccC----------------------CcC
Confidence 1221 1 23789999999999999999777543211 110 113
Q ss_pred cCCCCChhHHHHHHHHHHHHHHhCCC
Q 007722 313 QLNPLNPKTYQVFKNVISDVVKMFPE 338 (591)
Q Consensus 313 ~L~~~~~~t~~fl~~ll~Ev~~lF~~ 338 (591)
+.||.+|++.++-++..+|+-+.+|+
T Consensus 125 TaDPld~~V~~WW~~k~~eIY~~IPD 150 (328)
T PF07488_consen 125 TADPLDPEVRQWWKDKADEIYSAIPD 150 (328)
T ss_dssp ---TTSHHHHHHHHHHHHHHHHH-TT
T ss_pred cCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 57899999999999999999999986
No 143
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=31.65 E-value=1.2e+02 Score=32.29 Aligned_cols=74 Identities=9% Similarity=0.137 Sum_probs=47.8
Q ss_pred ChHHHHHHHHHHHHCCCc--EEEEEecCCCCCcccCCCCCC--cccCCCCCC--------CCCCCHHHHHHHHHHHHhcC
Q 007722 196 GVGDIMRTIYAMSANKMN--VFHWHITDSPSFPLNLPSEPG--LAAKGSYGD--------DMQYSPDDVKKIVEFGLDHG 263 (591)
Q Consensus 196 ~~~~lk~~Id~ma~~KlN--~lhlHltDd~~frle~~~~P~--Lt~~ga~~~--------~~~YT~~ei~eiv~yA~~rg 263 (591)
+++.-|++||..+..+.. .||.+..|.- - .+..+. ......|.. .-.++.+++++|.+||++.|
T Consensus 14 dl~~A~~lI~~A~~aGadaVKfQt~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~L~~~~~~~G 89 (329)
T TIGR03569 14 SLELAKKLVDAAAEAGADAVKFQTFKAEDL--V--SKNAPKAEYQKINTGAEESQLEMLKKLELSEEDHRELKEYCESKG 89 (329)
T ss_pred cHHHHHHHHHHHHHhCCCEEEeeeCCHHHh--h--CcccccccccccCCcCCCcHHHHHHHhCCCHHHHHHHHHHHHHhC
Confidence 689999999999999988 5665544431 1 111111 000011210 13578999999999999999
Q ss_pred CEEEEccCCC
Q 007722 264 VRVIPEIDSP 273 (591)
Q Consensus 264 I~VIPEID~P 273 (591)
|.++-+.=-.
T Consensus 90 i~~~stpfd~ 99 (329)
T TIGR03569 90 IEFLSTPFDL 99 (329)
T ss_pred CcEEEEeCCH
Confidence 9999775333
No 144
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=31.40 E-value=1.2e+02 Score=32.20 Aligned_cols=96 Identities=19% Similarity=0.334 Sum_probs=60.0
Q ss_pred cEEEEecChhhhhHHHHHHHHHhcCCCcccccceEEecCCCCCcccceeCCCCCCCChHHHHHHHHHHHHCCCcEEEEEe
Q 007722 140 TANLTAETPWGAMRGLETFSQLVWGRPSRVPVGVYVWDDPIFPHRGLLLDTSRNYYGVGDIMRTIYAMSANKMNVFHWHI 219 (591)
Q Consensus 140 ~i~I~a~~~~G~~~g~~Tl~Ql~~~~~~~~p~~~~I~D~P~f~~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lhlHl 219 (591)
+|.|.+-...|.+--=.-..||-..+--.+...+.--| |+. .=|| .+|..+.++.++++++.++..|+|+|---+
T Consensus 189 ~v~vVSmQTng~~L~~~lv~eLeeAGLdRiNlSv~aLD-pk~---Ak~L-~G~~dYdv~kvle~aE~i~~a~idvlIaPv 263 (414)
T COG2100 189 GVEVVSMQTNGVLLSKKLVDELEEAGLDRINLSVDALD-PKL---AKML-AGRKDYDVKKVLEVAEYIANAGIDVLIAPV 263 (414)
T ss_pred CceEEEEeeCceeccHHHHHHHHHhCCceEEeecccCC-HHH---HHHh-cCccccCHHHHHHHHHHHHhCCCCEEEeee
Confidence 45555555556554434444554422112221221112 222 2222 478899999999999999999999997543
Q ss_pred cCCCCCcccCCCCCCcccCCCCCCCCCCCHHHHHHHHHHHHhcC
Q 007722 220 TDSPSFPLNLPSEPGLAAKGSYGDDMQYSPDDVKKIVEFGLDHG 263 (591)
Q Consensus 220 tDd~~frle~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rg 263 (591)
| .| | |..+|+..||++|++.|
T Consensus 264 -----~------lP-----G-------~ND~E~~~iIe~A~~iG 284 (414)
T COG2100 264 -----W------LP-----G-------VNDDEMPKIIEWAREIG 284 (414)
T ss_pred -----e------cC-----C-------cChHHHHHHHHHHHHhC
Confidence 2 12 2 47799999999999998
No 145
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=31.38 E-value=1.4e+02 Score=31.16 Aligned_cols=69 Identities=7% Similarity=0.101 Sum_probs=38.2
Q ss_pred ChHHHHHHHHHHHHCCCcEEEEEecCC-CCCcccCCCCCCcccCCC----C---CCC-CCCCHHHHHHHHHHHHhcCCEE
Q 007722 196 GVGDIMRTIYAMSANKMNVFHWHITDS-PSFPLNLPSEPGLAAKGS----Y---GDD-MQYSPDDVKKIVEFGLDHGVRV 266 (591)
Q Consensus 196 ~~~~lk~~Id~ma~~KlN~lhlHltDd-~~frle~~~~P~Lt~~ga----~---~~~-~~YT~~ei~eiv~yA~~rgI~V 266 (591)
..+..+.+++..+..++|+++..+.-. .+..-. ..+|...-.+. + +.+ .|+ +.+..+|++|.++||.+
T Consensus 28 ~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~-n~~~~~~~~~~~~~~~d~~~~N~~YF--~~~d~~i~~a~~~Gi~~ 104 (289)
T PF13204_consen 28 TREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTP-NRYGFAPFPDEDPGQFDFTRPNPAYF--DHLDRRIEKANELGIEA 104 (289)
T ss_dssp -HHHHHHHHHHHHHTT--EEEEES-SSSS-B-----TTS-BS-SSTT------TT----HH--HHHHHHHHHHHHTT-EE
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEeCCCccccccc-ccCCCcCCCCCCccccCCCCCCHHHH--HHHHHHHHHHHHCCCeE
Confidence 457889999999999999999998643 112111 12222221110 0 111 223 67899999999999998
Q ss_pred E
Q 007722 267 I 267 (591)
Q Consensus 267 I 267 (591)
.
T Consensus 105 ~ 105 (289)
T PF13204_consen 105 A 105 (289)
T ss_dssp E
T ss_pred E
Confidence 5
No 146
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=31.27 E-value=71 Score=32.22 Aligned_cols=102 Identities=11% Similarity=0.031 Sum_probs=59.1
Q ss_pred HHHHHHHHhcCCCcccccceE--EecCCCCCcccceeCCCCCCCChHHHHHHHHHHHHCCCcEEEEEecCCCCCcccCCC
Q 007722 154 GLETFSQLVWGRPSRVPVGVY--VWDDPIFPHRGLLLDTSRNYYGVGDIMRTIYAMSANKMNVFHWHITDSPSFPLNLPS 231 (591)
Q Consensus 154 g~~Tl~Ql~~~~~~~~p~~~~--I~D~P~f~~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lhlHltDd~~frle~~~ 231 (591)
.++.+.+++...++.+. ... ..| .....|++-+|.++.--..+.+++.|+.+..++...+..+.. +. +
T Consensus 41 ~~~~~~~~l~~~gl~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lga~~i~~~~g----~~---~- 110 (258)
T PRK09997 41 DIEELKQVLASNKLEHT-LHNLPAGD-WAAGERGIACIPGREEEFRDGVAAAIRYARALGNKKINCLVG----KT---P- 110 (258)
T ss_pred CHHHHHHHHHHcCCcEE-EEcCCCCc-cccCcCccccCCCcHHHHHHHHHHHHHHHHHhCCCEEEECCC----CC---C-
Confidence 36677777764333332 111 122 123355655565543223477899999999999998876532 10 0
Q ss_pred CCCcccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEEcc
Q 007722 232 EPGLAAKGSYGDDMQYSPDDVKKIVEFGLDHGVRVIPEI 270 (591)
Q Consensus 232 ~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPEI 270 (591)
+.....-.| ....+.++++.++|+++||++.-|-
T Consensus 111 -~~~~~~~~~----~~~~~~l~~l~~~a~~~Gv~l~lE~ 144 (258)
T PRK09997 111 -AGFSSEQIH----ATLVENLRYAANMLMKEDILLLIEP 144 (258)
T ss_pred -CCCCHHHHH----HHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 000000000 1245678999999999999999883
No 147
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=31.03 E-value=73 Score=31.46 Aligned_cols=78 Identities=10% Similarity=0.172 Sum_probs=58.6
Q ss_pred ChHHHHHHHHHHHHCCCcEEEEEecCCCCCcc-c--CCCCCCcccCCCCCCCCCCCHHHH-----------------HHH
Q 007722 196 GVGDIMRTIYAMSANKMNVFHWHITDSPSFPL-N--LPSEPGLAAKGSYGDDMQYSPDDV-----------------KKI 255 (591)
Q Consensus 196 ~~~~lk~~Id~ma~~KlN~lhlHltDd~~frl-e--~~~~P~Lt~~ga~~~~~~YT~~ei-----------------~ei 255 (591)
+.+...++++.|..-++..+.+-++..+.... + .+.||++. .|+ +..+|.++. .++
T Consensus 14 ~~~~a~~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~~~~~~-vGA---GTVl~~e~a~~ai~aGA~FivSP~~~~~v 89 (201)
T PRK06015 14 DVEHAVPLARALAAGGLPAIEITLRTPAALDAIRAVAAEVEEAI-VGA---GTILNAKQFEDAAKAGSRFIVSPGTTQEL 89 (201)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHCCCCE-Eee---EeCcCHHHHHHHHHcCCCEEECCCCCHHH
Confidence 77899999999999999999999986654431 0 14577654 454 245666665 468
Q ss_pred HHHHHhcCCEEEEccCCCCchh
Q 007722 256 VEFGLDHGVRVIPEIDSPGHTG 277 (591)
Q Consensus 256 v~yA~~rgI~VIPEID~PGH~~ 277 (591)
+++|+++||-+||-.=||.-..
T Consensus 90 i~~a~~~~i~~iPG~~TptEi~ 111 (201)
T PRK06015 90 LAAANDSDVPLLPGAATPSEVM 111 (201)
T ss_pred HHHHHHcCCCEeCCCCCHHHHH
Confidence 8999999999999998885443
No 148
>COG1313 PflX Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only]
Probab=30.62 E-value=95 Score=32.48 Aligned_cols=59 Identities=14% Similarity=0.160 Sum_probs=38.0
Q ss_pred HHHHHHHHHHCCCcEEEEEecCCCCCc--ccCCCCCCcccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEE
Q 007722 200 IMRTIYAMSANKMNVFHWHITDSPSFP--LNLPSEPGLAAKGSYGDDMQYSPDDVKKIVEFGLDHGVRVIP 268 (591)
Q Consensus 200 lk~~Id~ma~~KlN~lhlHltDd~~fr--le~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIP 268 (591)
-|.+++.+|..=-|..-.-+-+. || +....||++. ...|.+|+.+.++||++.|++-+.
T Consensus 273 TkpI~~wiae~~g~~~~vNiM~Q--Y~P~ykA~eypeI~--------R~lt~eE~e~a~~~a~~~gl~~~~ 333 (335)
T COG1313 273 TKPILRWIAENLGNDVRVNIMFQ--YRPEYKAEEYPEIN--------RRLTREEYEKALEYAEKLGLTNIL 333 (335)
T ss_pred cHHHHHHHHHhCCCCeeEEehhh--ccchhhhhhchhhc--------ccCCHHHHHHHHHHHHHcCCceee
Confidence 45666666665443333333221 11 2234678875 368999999999999999998763
No 149
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=30.45 E-value=1.2e+02 Score=32.84 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=21.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEEE
Q 007722 245 MQYSPDDVKKIVEFGLDHGVRVIP 268 (591)
Q Consensus 245 ~~YT~~ei~eiv~yA~~rgI~VIP 268 (591)
..++.+++++|++.|+++|+-||=
T Consensus 184 ~~~~~~~~~~i~~~a~~~~~~ii~ 207 (403)
T TIGR01265 184 SVFSRDHLQKIAEVARKLGIPIIA 207 (403)
T ss_pred CCCCHHHHHHHHHHHHHCCCEEEE
Confidence 468999999999999999998873
No 150
>PRK09148 aminotransferase; Validated
Probab=30.31 E-value=83 Score=34.08 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=21.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEE
Q 007722 245 MQYSPDDVKKIVEFGLDHGVRVI 267 (591)
Q Consensus 245 ~~YT~~ei~eiv~yA~~rgI~VI 267 (591)
..||.+++++|++.|+++|+-||
T Consensus 180 ~~~s~~~l~~l~~~a~~~~~~ii 202 (405)
T PRK09148 180 YVADLDFYKDVVAFAKKHDIIIL 202 (405)
T ss_pred cCCCHHHHHHHHHHHHHcCeEEE
Confidence 47899999999999999998777
No 151
>PRK08175 aminotransferase; Validated
Probab=29.94 E-value=1.1e+02 Score=32.76 Aligned_cols=24 Identities=17% Similarity=0.102 Sum_probs=21.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEEE
Q 007722 245 MQYSPDDVKKIVEFGLDHGVRVIP 268 (591)
Q Consensus 245 ~~YT~~ei~eiv~yA~~rgI~VIP 268 (591)
..|+.+++++|++.|+++||-||=
T Consensus 179 ~~~~~~~~~~i~~~a~~~~i~ii~ 202 (395)
T PRK08175 179 QCVELEFFEKVVALAKRYDVLVVH 202 (395)
T ss_pred CCCCHHHHHHHHHHHHHcCcEEEE
Confidence 468999999999999999998883
No 152
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=29.86 E-value=53 Score=35.48 Aligned_cols=24 Identities=42% Similarity=0.761 Sum_probs=22.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEEE
Q 007722 245 MQYSPDDVKKIVEFGLDHGVRVIP 268 (591)
Q Consensus 245 ~~YT~~ei~eiv~yA~~rgI~VIP 268 (591)
..+|++|++.|.+.|+++||+||-
T Consensus 173 rvwt~eeL~~i~elc~kh~v~VIS 196 (388)
T COG1168 173 RVWTKEELRKIAELCLRHGVRVIS 196 (388)
T ss_pred ccccHHHHHHHHHHHHHcCCEEEe
Confidence 478999999999999999999995
No 153
>PF04202 Mfp-3: Foot protein 3; InterPro: IPR007328 Mytilus foot protein-3 (Mfp-3) is a highly polymorphic protein family located in the byssal adhesive plaques of blue mussels.
Probab=29.64 E-value=43 Score=26.85 Aligned_cols=23 Identities=30% Similarity=0.286 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhhhccccccCCC
Q 007722 11 VVALIFFLVLLIIPSVQSTTATT 33 (591)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~ 33 (591)
+|++++.|+|+.+.|+|+.+...
T Consensus 5 Si~VLlaLvLIg~fAVqSdag~~ 27 (71)
T PF04202_consen 5 SIAVLLALVLIGSFAVQSDAGYY 27 (71)
T ss_pred hHHHHHHHHHHhhheeeecCccc
Confidence 56778888888888888887543
No 154
>PRK02308 uvsE putative UV damage endonuclease; Provisional
Probab=29.62 E-value=6.8e+02 Score=26.25 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=20.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEE
Q 007722 245 MQYSPDDVKKIVEFGLDHGVRVI 267 (591)
Q Consensus 245 ~~YT~~ei~eiv~yA~~rgI~VI 267 (591)
....+++++++-++++++||+++
T Consensus 86 ~~~~~~~~~~~g~~~~~~~irls 108 (303)
T PRK02308 86 IEPFKEELREIGEFIKEHNIRLS 108 (303)
T ss_pred CCCCHHHHHHHHHHHHHcCCCee
Confidence 34678999999999999999876
No 155
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=29.24 E-value=67 Score=31.82 Aligned_cols=82 Identities=18% Similarity=0.323 Sum_probs=59.6
Q ss_pred ChHHHHHHHHHHHHCCCcEEEEEecCCCCCc---ccCCCCCCcccCCCCCCCCCCCHHHH-----------------HHH
Q 007722 196 GVGDIMRTIYAMSANKMNVFHWHITDSPSFP---LNLPSEPGLAAKGSYGDDMQYSPDDV-----------------KKI 255 (591)
Q Consensus 196 ~~~~lk~~Id~ma~~KlN~lhlHltDd~~fr---le~~~~P~Lt~~ga~~~~~~YT~~ei-----------------~ei 255 (591)
+.+...++++.|..-++..+..-++...... --.+.||++. .|+ +..+|.+|. .++
T Consensus 18 ~~e~a~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~~~~~-vGA---GTVl~~~~a~~a~~aGA~FivsP~~~~~v 93 (204)
T TIGR01182 18 DVDDALPLAKALIEGGLRVLEVTLRTPVALDAIRLLRKEVPDAL-IGA---GTVLNPEQLRQAVDAGAQFIVSPGLTPEL 93 (204)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHCCCCE-EEE---EeCCCHHHHHHHHHcCCCEEECCCCCHHH
Confidence 7799999999999999999999987654332 1124577654 443 234455553 478
Q ss_pred HHHHHhcCCEEEEccCCCCchhhHHH
Q 007722 256 VEFGLDHGVRVIPEIDSPGHTGSWAE 281 (591)
Q Consensus 256 v~yA~~rgI~VIPEID~PGH~~a~~~ 281 (591)
+++|+++||-++|-+=||.......+
T Consensus 94 ~~~~~~~~i~~iPG~~TptEi~~A~~ 119 (204)
T TIGR01182 94 AKHAQDHGIPIIPGVATPSEIMLALE 119 (204)
T ss_pred HHHHHHcCCcEECCCCCHHHHHHHHH
Confidence 89999999999999999977655443
No 156
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=29.21 E-value=2.1e+02 Score=35.38 Aligned_cols=120 Identities=15% Similarity=0.123 Sum_probs=68.6
Q ss_pred CCChHHHHHHHHHHHHCCCcEEEEEecCCCCCcccCCCCCCcccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEEccCCC
Q 007722 194 YYGVGDIMRTIYAMSANKMNVFHWHITDSPSFPLNLPSEPGLAAKGSYGDDMQYSPDDVKKIVEFGLDHGVRVIPEIDSP 273 (591)
Q Consensus 194 f~~~~~lk~~Id~ma~~KlN~lhlHltDd~~frle~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPEID~P 273 (591)
.++.+.+++-|..|..+++|.+-.|- ||. + .++.+.|-+.||-|+-|+|+-
T Consensus 351 a~~~e~~~~dl~lmK~~g~NavR~sH------------yP~---------------~--~~fydlcDe~GllV~dE~~~e 401 (1021)
T PRK10340 351 AVGMDRVEKDIQLMKQHNINSVRTAH------------YPN---------------D--PRFYELCDIYGLFVMAETDVE 401 (1021)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEecC------------CCC---------------C--HHHHHHHHHCCCEEEECCccc
Confidence 36788999999999999999987652 221 1 145688999999999999988
Q ss_pred Cchhh------HHHhCchhhhhc-ccccCcCCCCCCcccccCCCCCcCCCCChhHH-HHHHHHHHHHHHhCCCCceecCC
Q 007722 274 GHTGS------WAEAYPEIVTCA-NMFWWPAESKGEDKLAAEPGTGQLNPLNPKTY-QVFKNVISDVVKMFPEPFFHAGA 345 (591)
Q Consensus 274 GH~~a------~~~~~pel~~~~-~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~t~-~fl~~ll~Ev~~lF~~~~iHIGg 345 (591)
.|... +....|+..... ... ...-.+..+.|+--..+..|+..+ ..+..+.+-+.++=|++.+|..+
T Consensus 402 ~~g~~~~~~~~~~~~~p~~~~~~~~~~-----~~mV~RdrNHPSIi~WslGNE~~~g~~~~~~~~~~k~~DptR~v~~~~ 476 (1021)
T PRK10340 402 SHGFANVGDISRITDDPQWEKVYVDRI-----VRHIHAQKNHPSIIIWSLGNESGYGCNIRAMYHAAKALDDTRLVHYEE 476 (1021)
T ss_pred ccCcccccccccccCCHHHHHHHHHHH-----HHHHHhCCCCCEEEEEECccCccccHHHHHHHHHHHHhCCCceEEeCC
Confidence 87621 000011110000 000 000000111121112344444321 22367777777888999999888
Q ss_pred CC
Q 007722 346 DE 347 (591)
Q Consensus 346 DE 347 (591)
|.
T Consensus 477 ~~ 478 (1021)
T PRK10340 477 DR 478 (1021)
T ss_pred Cc
Confidence 75
No 157
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=29.01 E-value=2.9e+02 Score=29.91 Aligned_cols=118 Identities=11% Similarity=0.196 Sum_probs=0.0
Q ss_pred CcceEEEeeCCCCcEEEEecChhhhhHHHHHHHHHhcCCCcccccceEEecCCCCCcccceeCCCCCCCChHHHHHHHHH
Q 007722 127 NESYTLHVPNDRPTANLTAETPWGAMRGLETFSQLVWGRPSRVPVGVYVWDDPIFPHRGLLLDTSRNYYGVGDIMRTIYA 206 (591)
Q Consensus 127 ~E~Y~L~i~~~~~~i~I~a~~~~G~~~g~~Tl~Ql~~~~~~~~p~~~~I~D~P~f~~RG~mlD~aR~f~~~~~lk~~Id~ 206 (591)
+.++.+.++ ...|+|+.+ |+...+.-|.+.-..... .+++ |+|.=+.|.-+.-+.+.-++++.|.+.|+.
T Consensus 201 ~~~~~~~is--~r~ItisT~---Gl~~~i~~L~~~gl~~~L----aiSL-~a~~~e~r~~i~P~~~~~~~l~~l~~~i~~ 270 (368)
T PRK14456 201 TRKYRFSIS--QRKITISTV---GITPEIDRLATSGLKTKL----AVSL-HSADQEKRERLMPQAARDYPLDELREALIG 270 (368)
T ss_pred ccccccCcC--cCeeEEECC---CChHHHHHHHHcCCCceE----EEEe-cCCCHHHHHHhccccCCCCCHHHHHHHHHH
Q ss_pred HHHCCCcEEEEEecCCCCCcccCCCCCCcccCCCCCCCCCCCHHHHHHHHHHHHhc--CCEEEEccCCCC
Q 007722 207 MSANKMNVFHWHITDSPSFPLNLPSEPGLAAKGSYGDDMQYSPDDVKKIVEFGLDH--GVRVIPEIDSPG 274 (591)
Q Consensus 207 ma~~KlN~lhlHltDd~~frle~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~r--gI~VIPEID~PG 274 (591)
.+...-..+.+.. .-.|.++. +.+|+++|+++++.+ +|++||--.+++
T Consensus 271 ~~~~~g~~V~iey----------vLI~GvND----------s~eda~~L~~~l~~~~~~VnlIpyn~~~~ 320 (368)
T PRK14456 271 YASKTGEPVTLVY----------MLLEGIND----------SPEDARKLIRFASRFFCKINLIDYNSIVN 320 (368)
T ss_pred HHHhcCCeEEEEE----------EEEcCCCC----------CHHHHHHHHHHHhcCCCeeEEeeeccCCC
No 158
>PRK10426 alpha-glucosidase; Provisional
Probab=28.99 E-value=3.3e+02 Score=31.73 Aligned_cols=140 Identities=16% Similarity=0.199 Sum_probs=73.7
Q ss_pred CCCCcccceeCCCCCCCChHHHHHHHHHHHHCCCcEEEEEecCCCCCcccCCCCCCcccCCCCC-CCCCCCHHHHHHHHH
Q 007722 179 PIFPHRGLLLDTSRNYYGVGDIMRTIYAMSANKMNVFHWHITDSPSFPLNLPSEPGLAAKGSYG-DDMQYSPDDVKKIVE 257 (591)
Q Consensus 179 P~f~~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lhlHltDd~~frle~~~~P~Lt~~ga~~-~~~~YT~~ei~eiv~ 257 (591)
|++.++|+.+.. + -+-+.++++++.+...++-.=-+++.|-++.+. .++..-. .+.|. ....| -|.+++|+
T Consensus 205 P~Wal~G~~~g~--~-~~~~~v~~v~~~~r~~~IP~d~i~lddw~~~~~--~~~g~~~-~~~~~~d~~~F--Pdp~~mi~ 276 (635)
T PRK10426 205 PDWAYDGVTLGI--Q-GGTEVVQKKLDTMRNAGVKVNGIWAQDWSGIRM--TSFGKRL-MWNWKWDSERY--PQLDSRIK 276 (635)
T ss_pred ChhhccCccccc--c-CCHHHHHHHHHHHHHcCCCeeEEEEeccccccc--ccccccc-cccceEChhhC--CCHHHHHH
Confidence 567788887632 1 246789999999999987644444434333322 1111000 00010 01123 35788999
Q ss_pred HHHhcCCEEEEccCCCCchhhHHHhCchhhhhcccccCc--CCCCCCcccccCCCCCcCCCCChhHHHHHHHHHHH
Q 007722 258 FGLDHGVRVIPEIDSPGHTGSWAEAYPEIVTCANMFWWP--AESKGEDKLAAEPGTGQLNPLNPKTYQVFKNVISD 331 (591)
Q Consensus 258 yA~~rgI~VIPEID~PGH~~a~~~~~pel~~~~~~~~~~--~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~ll~E 331 (591)
.-+++||++|.-|| |+=... ...|.|... ..+... +++++.... ..-.++.+|.+||++.+...+.+++
T Consensus 277 ~L~~~G~k~v~~i~-P~v~~~-~~~y~e~~~--~gy~vk~~~g~~~~~~~-~~~~~~~~Dftnp~ar~Ww~~~~~~ 347 (635)
T PRK10426 277 QLNEEGIQFLGYIN-PYLASD-GDLCEEAAE--KGYLAKDADGGDYLVEF-GEFYAGVVDLTNPEAYEWFKEVIKK 347 (635)
T ss_pred HHHHCCCEEEEEEc-CccCCC-CHHHHHHHH--CCcEEECCCCCEEEeEe-cCCCceeecCCCHHHHHHHHHHHHH
Confidence 99999999998886 421110 011222211 011111 111110000 0112457999999999999888765
No 159
>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase. This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).
Probab=27.68 E-value=2.1e+02 Score=32.51 Aligned_cols=23 Identities=17% Similarity=0.417 Sum_probs=19.8
Q ss_pred CCCCHHHHHHHHHHHHhc--CCEEE
Q 007722 245 MQYSPDDVKKIVEFGLDH--GVRVI 267 (591)
Q Consensus 245 ~~YT~~ei~eiv~yA~~r--gI~VI 267 (591)
..||++++++|++.|+++ ++-||
T Consensus 255 ~vls~e~l~~I~~ia~~~~~~l~II 279 (521)
T TIGR03801 255 VAMSDESIEKIVDIVANDRPDLMIL 279 (521)
T ss_pred CCCCHHHHHHHHHHHHhcCCCeEEE
Confidence 478999999999999986 77665
No 160
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=27.36 E-value=44 Score=37.83 Aligned_cols=43 Identities=21% Similarity=0.465 Sum_probs=29.2
Q ss_pred CHHHHHHHHHHHHhcCCEE----------------EEccCCCCchhhHHHhCchhhhhc
Q 007722 248 SPDDVKKIVEFGLDHGVRV----------------IPEIDSPGHTGSWAEAYPEIVTCA 290 (591)
Q Consensus 248 T~~ei~eiv~yA~~rgI~V----------------IPEID~PGH~~a~~~~~pel~~~~ 290 (591)
-++++-+=++.-++|||+| +=-||||||...-..--.-|..|.
T Consensus 92 ~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs~EVsRslaac~ 150 (650)
T KOG0462|consen 92 GQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSGEVSRSLAACD 150 (650)
T ss_pred chhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccccceehehhhhcC
Confidence 4577888888889999987 346899999964332222344453
No 161
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=27.08 E-value=73 Score=32.30 Aligned_cols=103 Identities=14% Similarity=0.151 Sum_probs=62.0
Q ss_pred CChHHHHHHHHHHHHCCCcEEEEEecCCCCCcccCCCCCCcccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEEccCCCC
Q 007722 195 YGVGDIMRTIYAMSANKMNVFHWHITDSPSFPLNLPSEPGLAAKGSYGDDMQYSPDDVKKIVEFGLDHGVRVIPEIDSPG 274 (591)
Q Consensus 195 ~~~~~lk~~Id~ma~~KlN~lhlHltDd~~frle~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPEID~PG 274 (591)
+++.+++.+++.|+.| +..+- + +|+....|.++-++|.++.|+++||.|.|- .+.-
T Consensus 9 l~~~~~~d~Le~~g~y-ID~lK------------------f----g~Gt~~l~~~~~l~eki~la~~~~V~v~~G-Gtl~ 64 (237)
T TIGR03849 9 LPPKFVEDYLKVCGDY-ITFVK------------------F----GWGTSALIDRDIVKEKIEMYKDYGIKVYPG-GTLF 64 (237)
T ss_pred CCHHHHHHHHHHhhhh-eeeEE------------------e----cCceEeeccHHHHHHHHHHHHHcCCeEeCC-ccHH
Confidence 6899999999999976 11110 1 233334677789999999999999999944 3332
Q ss_pred chhhHHHhCchhh-hhcccccCcCCCCCCcccccCCCCCcCCCCChhHHHHHHHHHHH
Q 007722 275 HTGSWAEAYPEIV-TCANMFWWPAESKGEDKLAAEPGTGQLNPLNPKTYQVFKNVISD 331 (591)
Q Consensus 275 H~~a~~~~~pel~-~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~ll~E 331 (591)
|........+++. .|.. .+- ...+-..+.++...++=..+++.+-+.
T Consensus 65 E~~~~q~~~~~Yl~~~k~---------lGf-~~IEiS~G~~~i~~~~~~rlI~~~~~~ 112 (237)
T TIGR03849 65 EIAHSKGKFDEYLNECDE---------LGF-EAVEISDGSMEISLEERCNLIERAKDN 112 (237)
T ss_pred HHHHHhhhHHHHHHHHHH---------cCC-CEEEEcCCccCCCHHHHHHHHHHHHhC
Confidence 2211112233332 3421 111 123456678888777766777665544
No 162
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=27.02 E-value=1.4e+02 Score=31.82 Aligned_cols=57 Identities=12% Similarity=0.088 Sum_probs=40.2
Q ss_pred ChHHHHHHHHHHHHCCCcEEEEEecCCCCCcccCCCCCCcccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEEccC
Q 007722 196 GVGDIMRTIYAMSANKMNVFHWHITDSPSFPLNLPSEPGLAAKGSYGDDMQYSPDDVKKIVEFGLDHGVRVIPEID 271 (591)
Q Consensus 196 ~~~~lk~~Id~ma~~KlN~lhlHltDd~~frle~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPEID 271 (591)
+.+.-+.+||.|+.+++..+---|---++|+ .. -.+-+++|+++|++.|++||-.|+
T Consensus 14 ~~~~~~~Yi~~~~~~Gf~~IFtsl~~~~~~~-----------------~~--~~~~~~ell~~Anklg~~vivDvn 70 (360)
T COG3589 14 PKEKDIAYIDRMHKYGFKRIFTSLLIPEEDA-----------------EL--YFHRFKELLKEANKLGLRVIVDVN 70 (360)
T ss_pred cchhHHHHHHHHHHcCccceeeecccCCchH-----------------HH--HHHHHHHHHHHHHhcCcEEEEEcC
Confidence 5678899999999999986654331111110 01 226689999999999999997773
No 163
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=26.81 E-value=3.2e+02 Score=28.48 Aligned_cols=63 Identities=17% Similarity=0.222 Sum_probs=46.2
Q ss_pred ChHHHHHHHHHHHHCCCcEEEEEecCCCCCcccCCCCCCcccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEEcc
Q 007722 196 GVGDIMRTIYAMSANKMNVFHWHITDSPSFPLNLPSEPGLAAKGSYGDDMQYSPDDVKKIVEFGLDHGVRVIPEI 270 (591)
Q Consensus 196 ~~~~lk~~Id~ma~~KlN~lhlHltDd~~frle~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPEI 270 (591)
+.+.+++.++.+...+.+.+-+.++...+.+- .. .....++.++++++++.|+++|+.|.-..
T Consensus 118 ~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~---~~---------~~~~~~~~e~l~~~~~~A~~~g~~v~~H~ 180 (342)
T cd01299 118 GVEEVRAAVREQLRRGADQIKIMATGGVLSPG---DP---------PPDTQFSEEELRAIVDEAHKAGLYVAAHA 180 (342)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeccCCcCCCC---CC---------CcccCcCHHHHHHHHHHHHHcCCEEEEEe
Confidence 36788999999999999999988753221111 00 01135799999999999999999988554
No 164
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=26.32 E-value=5.4e+02 Score=24.41 Aligned_cols=70 Identities=16% Similarity=0.185 Sum_probs=45.7
Q ss_pred CCChHHHHHHHHHHHHCCCcEEEEEecCCCCCcccCCCCCCcccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEEcc
Q 007722 194 YYGVGDIMRTIYAMSANKMNVFHWHITDSPSFPLNLPSEPGLAAKGSYGDDMQYSPDDVKKIVEFGLDHGVRVIPEI 270 (591)
Q Consensus 194 f~~~~~lk~~Id~ma~~KlN~lhlHltDd~~frle~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPEI 270 (591)
=++.+.-.+.+..|...+||+|-+=-+-..++.+ ||.--..+.+. .=..+=+..+++.|.+.||.|+.-+
T Consensus 16 ~~~~~~W~~~~~~m~~~GidtlIlq~~~~~~~~~----yps~~~~~~~~---~~~~d~l~~~L~~A~~~Gmkv~~Gl 85 (166)
T PF14488_consen 16 NWTPAQWREEFRAMKAIGIDTLILQWTGYGGFAF----YPSKLSPGGFY---MPPVDLLEMILDAADKYGMKVFVGL 85 (166)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEEEeecCCccc----CCccccCcccc---CCcccHHHHHHHHHHHcCCEEEEeC
Confidence 3677888999999999999988766554333321 23100011110 0134568899999999999999554
No 165
>PLN02635 disproportionating enzyme
Probab=26.10 E-value=94 Score=35.42 Aligned_cols=104 Identities=13% Similarity=0.226 Sum_probs=63.5
Q ss_pred CCCHHHHHHHHHHHHhcCCEEEEccCCC-CchhhHHHhCchhhh------------hcccccCcCCCCCCcccccCCCCC
Q 007722 246 QYSPDDVKKIVEFGLDHGVRVIPEIDSP-GHTGSWAEAYPEIVT------------CANMFWWPAESKGEDKLAAEPGTG 312 (591)
Q Consensus 246 ~YT~~ei~eiv~yA~~rgI~VIPEID~P-GH~~a~~~~~pel~~------------~~~~~~~~~~~~~~~~~~~~~~~~ 312 (591)
+.-.+|++++.+||+++||.||=.|-+- +|.++=.=++|++.. ++..+..+.++.|+. |
T Consensus 220 ~~~~~Qw~~l~~yA~~~Gi~L~gDlpi~Va~dSaDvWa~~~lF~ld~~g~p~~~aGaPPD~Fs~~GQ~WG~-----P--- 291 (538)
T PLN02635 220 FLFQRQWQAVRSYANEKGISIIGDMPIYVGGHSADVWANRKLFLLNKTGFPLLVSGVPPDAFSETGQLWGS-----P--- 291 (538)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeecccCCCcHHHhcCHHhhcCCCCCCcceeeeCCCCcCCcccccCCC-----c---
Confidence 3455889999999999999987655432 333332224555431 222333355666764 1
Q ss_pred cCCC--CChhHHHHHHHHHHHHHHhCCC----------CceecCCCC--CCCCCCCCCH
Q 007722 313 QLNP--LNPKTYQVFKNVISDVVKMFPE----------PFFHAGADE--VTPGCWKTDP 357 (591)
Q Consensus 313 ~L~~--~~~~t~~fl~~ll~Ev~~lF~~----------~~iHIGgDE--v~~~~w~~~p 357 (591)
.+|+ ....-|....+.++..+++|.. .|+.|=.++ ...+.|...|
T Consensus 292 ~y~w~~l~~~gy~ww~~Rlr~~~~~~d~lRIDHf~Gf~r~W~IP~g~~ta~~G~wv~~P 350 (538)
T PLN02635 292 LYDWKAMAKDGYSWWAGRMRRALELYDEFRIDHFRGFAGYWAVPADAKTAMNGRWKVGP 350 (538)
T ss_pred CcCHHHHHhcCcHHHHHHHHHHHHhCCeEEecchhhhheeeeccCCCCCCCCCeeeeCC
Confidence 2343 2466789999999999998852 455555443 3345666654
No 166
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=26.04 E-value=4.9e+02 Score=27.48 Aligned_cols=71 Identities=20% Similarity=0.268 Sum_probs=49.7
Q ss_pred CChHHHHHHHHHHHHCCCcEEEEEe--cCCCCCcccCCCCCCcccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEEccCC
Q 007722 195 YGVGDIMRTIYAMSANKMNVFHWHI--TDSPSFPLNLPSEPGLAAKGSYGDDMQYSPDDVKKIVEFGLDHGVRVIPEIDS 272 (591)
Q Consensus 195 ~~~~~lk~~Id~ma~~KlN~lhlHl--tDd~~frle~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPEID~ 272 (591)
-.-+++++++..-.. -.|-|.|-+ .+.++-+-++++.|..- .||.+++.+-++-+.+.||..|--+-+
T Consensus 14 Rk~~~~R~lv~Et~L-~~~dLI~PiFV~eg~~~~~~I~SMPgv~---------r~s~d~l~~~~~~~~~lGi~av~LFgv 83 (330)
T COG0113 14 RKSPALRRLVRETRL-TPNDLIYPIFVVEGENIKEEIPSMPGVY---------RYSLDRLVEEAEELVDLGIPAVILFGV 83 (330)
T ss_pred cCCHHHHHHHHhcCC-CHHHeeEeEEEecCCCCccccCCCCCce---------eccHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 334666666654332 334444443 45555567788888552 589999999999999999999999888
Q ss_pred CCc
Q 007722 273 PGH 275 (591)
Q Consensus 273 PGH 275 (591)
|-|
T Consensus 84 p~~ 86 (330)
T COG0113 84 PDD 86 (330)
T ss_pred Ccc
Confidence 855
No 167
>PRK07550 hypothetical protein; Provisional
Probab=25.65 E-value=2.2e+02 Score=30.39 Aligned_cols=23 Identities=22% Similarity=0.631 Sum_probs=20.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEE
Q 007722 245 MQYSPDDVKKIVEFGLDHGVRVI 267 (591)
Q Consensus 245 ~~YT~~ei~eiv~yA~~rgI~VI 267 (591)
..++.+++++|++.|+++|+-||
T Consensus 178 ~~~~~~~~~~i~~~~~~~~~~iI 200 (386)
T PRK07550 178 VVYPPELLHELYDLARRHGIALI 200 (386)
T ss_pred cccCHHHHHHHHHHHHHcCeEEE
Confidence 36899999999999999999876
No 168
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=25.46 E-value=4.7e+02 Score=26.88 Aligned_cols=61 Identities=15% Similarity=0.103 Sum_probs=44.0
Q ss_pred CCChHHHHHHHHHHHHCCCcEEEEEecCCCCCcccCCCCCCcccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEEccCC-
Q 007722 194 YYGVGDIMRTIYAMSANKMNVFHWHITDSPSFPLNLPSEPGLAAKGSYGDDMQYSPDDVKKIVEFGLDHGVRVIPEIDS- 272 (591)
Q Consensus 194 f~~~~~lk~~Id~ma~~KlN~lhlHltDd~~frle~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPEID~- 272 (591)
.+|-+..+..|+.....++..+|+-..-+ ..+.+++.+++|+++|++|..-+++
T Consensus 87 ~~p~~~~~~di~~~~~~g~~~iri~~~~~-------------------------~~~~~~~~i~~ak~~G~~v~~~i~~~ 141 (275)
T cd07937 87 HYPDDVVELFVEKAAKNGIDIFRIFDALN-------------------------DVRNLEVAIKAVKKAGKHVEGAICYT 141 (275)
T ss_pred CCCcHHHHHHHHHHHHcCCCEEEEeecCC-------------------------hHHHHHHHHHHHHHCCCeEEEEEEec
Confidence 46777788889998888888877643110 2478999999999999999876643
Q ss_pred --CCchhhH
Q 007722 273 --PGHTGSW 279 (591)
Q Consensus 273 --PGH~~a~ 279 (591)
+.|....
T Consensus 142 ~~~~~~~~~ 150 (275)
T cd07937 142 GSPVHTLEY 150 (275)
T ss_pred CCCCCCHHH
Confidence 5555443
No 169
>PRK08361 aspartate aminotransferase; Provisional
Probab=25.33 E-value=2e+02 Score=30.73 Aligned_cols=23 Identities=13% Similarity=0.255 Sum_probs=20.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEE
Q 007722 245 MQYSPDDVKKIVEFGLDHGVRVI 267 (591)
Q Consensus 245 ~~YT~~ei~eiv~yA~~rgI~VI 267 (591)
..++.+++++|++.|++++|-||
T Consensus 181 ~~~~~~~~~~l~~~~~~~~~~ii 203 (391)
T PRK08361 181 ATLDKEVAKAIADIAEDYNIYIL 203 (391)
T ss_pred cCcCHHHHHHHHHHHHHcCeEEE
Confidence 46899999999999999999777
No 170
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=25.19 E-value=81 Score=33.23 Aligned_cols=23 Identities=13% Similarity=0.250 Sum_probs=20.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEE
Q 007722 245 MQYSPDDVKKIVEFGLDHGVRVI 267 (591)
Q Consensus 245 ~~YT~~ei~eiv~yA~~rgI~VI 267 (591)
..|+.+++++|++.|+++|+-||
T Consensus 151 ~~~~~~~~~~l~~~a~~~~~~ii 173 (350)
T TIGR03537 151 ATAPRSYLKETIAMCREHGIILC 173 (350)
T ss_pred cccCHHHHHHHHHHHHHcCcEEE
Confidence 46899999999999999998776
No 171
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=25.08 E-value=83 Score=33.52 Aligned_cols=57 Identities=19% Similarity=0.309 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHhcCCEEEEccCCCCchhhHHHhCchhhhhcccccCcCCCCCCcccccCCCCCcCCCCChhHHHHHHHH
Q 007722 249 PDDVKKIVEFGLDHGVRVIPEIDSPGHTGSWAEAYPEIVTCANMFWWPAESKGEDKLAAEPGTGQLNPLNPKTYQVFKNV 328 (591)
Q Consensus 249 ~~ei~eiv~yA~~rgI~VIPEID~PGH~~a~~~~~pel~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~l 328 (591)
++=+.-+++.|++++|+|+ .||+...++.+|.+..... +...+.++++++++++.+=
T Consensus 52 ~~yv~~~l~~C~~~~Idv~----~P~~~~~~l~~~r~~F~a~-------------------Gv~l~~~~~~~~l~~~~dK 108 (329)
T PF15632_consen 52 EEYVDWCLDFCKEHGIDVF----VPGRNRELLAAHRDEFEAL-------------------GVKLLTASSAETLELADDK 108 (329)
T ss_pred HHHHHHHHHHHHHhCCeEE----EcCccHHHHHHHHHHHHHh-------------------CCEEEecCCHHHHHHHhhH
Confidence 3447789999999999999 8999999887776543321 1123456778888877653
No 172
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=25.01 E-value=1.4e+02 Score=30.45 Aligned_cols=51 Identities=12% Similarity=0.309 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHCCCcEEEEEecCCCCCcccCCCCCCcccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEEccC
Q 007722 198 GDIMRTIYAMSANKMNVFHWHITDSPSFPLNLPSEPGLAAKGSYGDDMQYSPDDVKKIVEFGLDHGVRVIPEID 271 (591)
Q Consensus 198 ~~lk~~Id~ma~~KlN~lhlHltDd~~frle~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPEID 271 (591)
..++++++.+..++++.+. ++|. + -..+.++..++|+.|+++|..|+||+-
T Consensus 84 ~~~~~yl~~~k~lGf~~IE--iSdG--t-------------------i~l~~~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 84 GKFDEYLEECKELGFDAIE--ISDG--T-------------------IDLPEEERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp T-HHHHHHHHHHCT-SEEE--E--S--S-------------------S---HHHHHHHHHHHCCTTSEEEEEES
T ss_pred ChHHHHHHHHHHcCCCEEE--ecCC--c-------------------eeCCHHHHHHHHHHHHHCCCEEeeccc
Confidence 4566677777777777655 3331 1 135889999999999999999999984
No 173
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=24.44 E-value=2.8e+02 Score=27.93 Aligned_cols=60 Identities=12% Similarity=0.204 Sum_probs=44.8
Q ss_pred cceeCCCCCCCChHHHHHHHHHHHHCCCcEEEEEecCCCCCcccCCCCCCcccCCCCCCCCCCCHHHHHHHHHHHHhcCC
Q 007722 185 GLLLDTSRNYYGVGDIMRTIYAMSANKMNVFHWHITDSPSFPLNLPSEPGLAAKGSYGDDMQYSPDDVKKIVEFGLDHGV 264 (591)
Q Consensus 185 G~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lhlHltDd~~frle~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI 264 (591)
|.++.++. -+-+.|+.++.++++.+++.+..-+.|. ...+|.++++++-+.++++||
T Consensus 3 g~~~~~~~------~~~~~~~~~~~~G~~~vel~~~~~~~~~-----------------~~~~~~~~~~~l~~~~~~~gl 59 (273)
T smart00518 3 GAHVSAAG------GLYKAFIEAVDIGARSFQLFLGNPRSWK-----------------GVRLSEETAEKFKEALKENNI 59 (273)
T ss_pred eEEEcccC------cHhHHHHHHHHcCCCEEEEECCCCCCCC-----------------CCCCCHHHHHHHHHHHHHcCC
Confidence 45555543 2557889999999999999876533321 014689999999999999999
Q ss_pred EEE
Q 007722 265 RVI 267 (591)
Q Consensus 265 ~VI 267 (591)
+|.
T Consensus 60 ~ls 62 (273)
T smart00518 60 DVS 62 (273)
T ss_pred CEE
Confidence 976
No 174
>PRK14508 4-alpha-glucanotransferase; Provisional
Probab=24.34 E-value=1.1e+02 Score=34.55 Aligned_cols=104 Identities=16% Similarity=0.236 Sum_probs=62.7
Q ss_pred CCCHHHHHHHHHHHHhcCCEEEEccCCC-CchhhHHHhCchhhh------------hcccccCcCCCCCCcccccCCCCC
Q 007722 246 QYSPDDVKKIVEFGLDHGVRVIPEIDSP-GHTGSWAEAYPEIVT------------CANMFWWPAESKGEDKLAAEPGTG 312 (591)
Q Consensus 246 ~YT~~ei~eiv~yA~~rgI~VIPEID~P-GH~~a~~~~~pel~~------------~~~~~~~~~~~~~~~~~~~~~~~~ 312 (591)
+.-.+|++++.+||+++||.||=.+-+- +|-++=.=++|++.. ++.....+.++.|+. |
T Consensus 194 ~~~~~Q~~~~~~yA~~~Gi~L~gDLpigV~~dsaDvWa~~~lF~l~~~~~p~~vaGaPPD~Fs~~GQ~WG~-----P--- 265 (497)
T PRK14508 194 YLFFRQWKALKAYANDKGIEIIGDLPIYVAYDSADVWANPELFKLDEDGKPTVVAGVPPDYFSETGQLWGN-----P--- 265 (497)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEeeecccCCCCHHHHcChhhhcCCCCCCcceeeeCCCCCCCcccCcCCC-----C---
Confidence 4456899999999999999987665442 222222224555531 222223345566664 1
Q ss_pred cCCCC--ChhHHHHHHHHHHHHHHhCCC----------CceecCCCCCC--CCCCCCCH
Q 007722 313 QLNPL--NPKTYQVFKNVISDVVKMFPE----------PFFHAGADEVT--PGCWKTDP 357 (591)
Q Consensus 313 ~L~~~--~~~t~~fl~~ll~Ev~~lF~~----------~~iHIGgDEv~--~~~w~~~p 357 (591)
.+|+. ...-|....+.++..+++|.. +++-|-.++.. .++|-..|
T Consensus 266 ~y~w~~l~~~gy~ww~~rlr~~~~~~~~lRIDH~~Gf~r~W~IP~~~~~a~~G~~v~~p 324 (497)
T PRK14508 266 VYNWDALRKDGYRWWIERLRRSFKLYDIVRIDHFRGFEAYWEIPAGEKTAINGRWVPGP 324 (497)
T ss_pred CcCHHHHHhcCcHHHHHHHHHHHHhCCeEEecchhhhceeeeecCCCCCCCCCeeecCC
Confidence 23432 345699999999999998863 45556655432 35565554
No 175
>PF09183 DUF1947: Domain of unknown function (DUF1947); InterPro: IPR015266 Members of this entry are a set of hypothetical archaeal proteins. Their exact function has not, as yet, been defined. ; PDB: 1Q7H_A.
Probab=24.03 E-value=47 Score=26.69 Aligned_cols=23 Identities=9% Similarity=0.197 Sum_probs=16.1
Q ss_pred CCCCCChHHHHHHHHHHHH-CCCc
Q 007722 191 SRNYYGVGDIMRTIYAMSA-NKMN 213 (591)
Q Consensus 191 aR~f~~~~~lk~~Id~ma~-~KlN 213 (591)
.|||+|.-.+|++++.|.. |+++
T Consensus 1 qRH~LSkKe~k~~~~k~~~~ygId 24 (65)
T PF09183_consen 1 QRHFLSKKEIKEIKEKIKEKYGID 24 (65)
T ss_dssp --EE--HHHHHHHHHHHHT-TT--
T ss_pred CcccccHHHHHHHHHHHHHHhCcC
Confidence 4899999999999999998 7765
No 176
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=24.03 E-value=83 Score=32.05 Aligned_cols=61 Identities=15% Similarity=0.135 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHHHCCCcEEEEEecCCCCCcccCCCCCCcccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEEcc
Q 007722 197 VGDIMRTIYAMSANKMNVFHWHITDSPSFPLNLPSEPGLAAKGSYGDDMQYSPDDVKKIVEFGLDHGVRVIPEI 270 (591)
Q Consensus 197 ~~~lk~~Id~ma~~KlN~lhlHltDd~~frle~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPEI 270 (591)
++.+++.|+..+..+...+-++ |++.... +.. ...+ ....+.+++|.++|++.||+|.-|-
T Consensus 98 ~~~~~~~i~~a~~lG~~~i~~~-----~~~~~~~--~~~--~~~~----~~~~~~l~~l~~~A~~~GV~i~iE~ 158 (283)
T PRK13209 98 LEIMRKAIQLAQDLGIRVIQLA-----GYDVYYE--QAN--NETR----RRFIDGLKESVELASRASVTLAFEI 158 (283)
T ss_pred HHHHHHHHHHHHHcCCCEEEEC-----Ccccccc--ccH--HHHH----HHHHHHHHHHHHHHHHhCCEEEEee
Confidence 5678999999999999988764 2211000 000 0000 1235778999999999999999986
No 177
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=23.95 E-value=4.3e+02 Score=29.36 Aligned_cols=30 Identities=23% Similarity=0.246 Sum_probs=25.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEEEccCCCCc
Q 007722 245 MQYSPDDVKKIVEFGLDHGVRVIPEIDSPGH 275 (591)
Q Consensus 245 ~~YT~~ei~eiv~yA~~rgI~VIPEID~PGH 275 (591)
..+|.+.-++|++.|+++++-|| |=|.-|.
T Consensus 242 ~tms~~rR~~Ll~lA~~~~~~II-EDD~y~e 271 (459)
T COG1167 242 VTMSLERRKALLALAEKYDVLII-EDDYYGE 271 (459)
T ss_pred CccCHHHHHHHHHHHHHcCCeEE-eeCcchh
Confidence 47899999999999999999988 5555543
No 178
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=23.91 E-value=72 Score=32.42 Aligned_cols=23 Identities=17% Similarity=0.416 Sum_probs=19.3
Q ss_pred CCCHHHHHHHHHHHHhcCCEEEE
Q 007722 246 QYSPDDVKKIVEFGLDHGVRVIP 268 (591)
Q Consensus 246 ~YT~~ei~eiv~yA~~rgI~VIP 268 (591)
.++.+++++|.+||+++||..+-
T Consensus 52 el~~e~~~~L~~~~~~~gi~f~s 74 (241)
T PF03102_consen 52 ELSEEQHKELFEYCKELGIDFFS 74 (241)
T ss_dssp SS-HHHHHHHHHHHHHTT-EEEE
T ss_pred cCCHHHHHHHHHHHHHcCCEEEE
Confidence 58999999999999999999983
No 179
>PLN03059 beta-galactosidase; Provisional
Probab=23.79 E-value=6.5e+02 Score=30.44 Aligned_cols=62 Identities=16% Similarity=0.076 Sum_probs=47.4
Q ss_pred CChHHHHHHHHHHHHCCCcEEEEEecCCCCCcccCCCCCCcccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEEc
Q 007722 195 YGVGDIMRTIYAMSANKMNVFHWHITDSPSFPLNLPSEPGLAAKGSYGDDMQYSPDDVKKIVEFGLDHGVRVIPE 269 (591)
Q Consensus 195 ~~~~~lk~~Id~ma~~KlN~lhlHltDd~~frle~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPE 269 (591)
+|.+.-++.|..|...++|++.-++- |.+.-+. .|.|. +=...|+..+++.|++.|+-||--
T Consensus 56 ~~p~~W~d~L~k~Ka~GlNtV~tYV~----Wn~HEp~------~G~~d---F~G~~DL~~Fl~la~e~GLyvilR 117 (840)
T PLN03059 56 STPEMWPDLIQKAKDGGLDVIQTYVF----WNGHEPS------PGNYY---FEDRYDLVKFIKVVQAAGLYVHLR 117 (840)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEEec----ccccCCC------CCeee---ccchHHHHHHHHHHHHcCCEEEec
Confidence 46789999999999999999997764 5443222 24442 124689999999999999999965
No 180
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=23.65 E-value=92 Score=31.61 Aligned_cols=62 Identities=13% Similarity=0.043 Sum_probs=41.9
Q ss_pred ChHHHHHHHHHHHHCCCcEEEEEecCCCCCcccCCCCCCcccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEEcc
Q 007722 196 GVGDIMRTIYAMSANKMNVFHWHITDSPSFPLNLPSEPGLAAKGSYGDDMQYSPDDVKKIVEFGLDHGVRVIPEI 270 (591)
Q Consensus 196 ~~~~lk~~Id~ma~~KlN~lhlHltDd~~frle~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPEI 270 (591)
.++.+++.|+..+..+.+.+-++- ++.- ..+. .+ -.+ .-..+.+++|.++|++.||++.-|-
T Consensus 92 ~~~~~~~~i~~a~~lG~~~v~~~~-----~~~~--~~~~-~~-~~~----~~~~~~l~~l~~~a~~~gv~l~lE~ 153 (284)
T PRK13210 92 ALEIMKKAIRLAQDLGIRTIQLAG-----YDVY--YEEK-SE-ETR----QRFIEGLAWAVEQAAAAQVMLAVEI 153 (284)
T ss_pred HHHHHHHHHHHHHHhCCCEEEECC-----cccc--cccc-cH-HHH----HHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 367889999999999999997642 2100 0000 00 000 1134679999999999999999886
No 181
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=23.35 E-value=1.6e+02 Score=29.62 Aligned_cols=52 Identities=15% Similarity=0.145 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHHHCCCcEEEEEecCCCCCcccCCCCCCcccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEEccCC
Q 007722 197 VGDIMRTIYAMSANKMNVFHWHITDSPSFPLNLPSEPGLAAKGSYGDDMQYSPDDVKKIVEFGLDHGVRVIPEIDS 272 (591)
Q Consensus 197 ~~~lk~~Id~ma~~KlN~lhlHltDd~~frle~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPEID~ 272 (591)
+....++++.++..+.+.+-+|.. ++ + +.+++.+++++++++|+++++++.-
T Consensus 87 ~~~~~~~i~~~~~~Gadgvii~dl-----p~------e-------------~~~~~~~~~~~~~~~Gl~~~~~v~p 138 (244)
T PRK13125 87 VDSLDNFLNMARDVGADGVLFPDL-----LI------D-------------YPDDLEKYVEIIKNKGLKPVFFTSP 138 (244)
T ss_pred hhCHHHHHHHHHHcCCCEEEECCC-----CC------C-------------cHHHHHHHHHHHHHcCCCEEEEECC
Confidence 346678899999999999998831 01 0 2478999999999999999999964
No 182
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=23.34 E-value=1.5e+02 Score=31.94 Aligned_cols=55 Identities=16% Similarity=0.169 Sum_probs=36.9
Q ss_pred ChHHHHHHHHHHHHC----CCcEEEEEecCCCCCcccCCCCCCcccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEEc
Q 007722 196 GVGDIMRTIYAMSAN----KMNVFHWHITDSPSFPLNLPSEPGLAAKGSYGDDMQYSPDDVKKIVEFGLDHGVRVIPE 269 (591)
Q Consensus 196 ~~~~lk~~Id~ma~~----KlN~lhlHltDd~~frle~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPE 269 (591)
+.+.++++.+.+... ++|.+-+|-. ....| ..-++++++++.++.+++||.|..-
T Consensus 266 s~e~a~~La~~l~~l~~~~~VnLIPynp~-------~~~~~------------~~ps~e~i~~f~~~L~~~gi~v~vR 324 (348)
T PRK14467 266 SPEDALRLAQLIGKNKKKFKVNLIPFNPD-------PELPY------------ERPELERVYKFQKILWDNGISTFVR 324 (348)
T ss_pred CHHHHHHHHHHHhcCCCceEEEEecCCCC-------CCCCC------------CCCCHHHHHHHHHHHHHCCCcEEEe
Confidence 467888888888764 3444444421 11122 2348899999999999999999743
No 183
>PRK11627 hypothetical protein; Provisional
Probab=23.23 E-value=5.1e+02 Score=25.37 Aligned_cols=22 Identities=23% Similarity=0.579 Sum_probs=13.1
Q ss_pred HHHHHhhhccccccCCCCCcccC
Q 007722 17 FLVLLIIPSVQSTTATTIDVWPK 39 (591)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~l~P~ 39 (591)
+++++++++|++.. ..+.+-|.
T Consensus 9 l~a~~~L~gCA~~p-~~l~l~P~ 30 (192)
T PRK11627 9 LVALFMLAGCATPS-NTLEVSPK 30 (192)
T ss_pred HHHHHHHHhhcCCC-CEEEeCCc
Confidence 44455577777653 55566666
No 184
>PTZ00376 aspartate aminotransferase; Provisional
Probab=23.14 E-value=3.6e+02 Score=29.04 Aligned_cols=23 Identities=9% Similarity=0.095 Sum_probs=20.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEE
Q 007722 245 MQYSPDDVKKIVEFGLDHGVRVI 267 (591)
Q Consensus 245 ~~YT~~ei~eiv~yA~~rgI~VI 267 (591)
..||.+++++|++.|+++++-||
T Consensus 191 ~~~s~~~~~~l~~~a~~~~~~ii 213 (404)
T PTZ00376 191 VDPTEEQWKEIADVMKRKNLIPF 213 (404)
T ss_pred CCCCHHHHHHHHHHHHhCCcEEE
Confidence 46899999999999999999776
No 185
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=23.13 E-value=2.5e+02 Score=28.56 Aligned_cols=51 Identities=20% Similarity=0.309 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHCCCcEEEEEecCCCCCcccCCCCCCcccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEEccC
Q 007722 198 GDIMRTIYAMSANKMNVFHWHITDSPSFPLNLPSEPGLAAKGSYGDDMQYSPDDVKKIVEFGLDHGVRVIPEID 271 (591)
Q Consensus 198 ~~lk~~Id~ma~~KlN~lhlHltDd~~frle~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPEID 271 (591)
..++++++....++++++. ++|. + -..+.++..++|+.++++|..|.||+-
T Consensus 71 ~~~~~Yl~~~k~lGf~~IE--iS~G--~-------------------~~i~~~~~~rlI~~~~~~g~~v~~EvG 121 (237)
T TIGR03849 71 GKFDEYLNECDELGFEAVE--ISDG--S-------------------MEISLEERCNLIERAKDNGFMVLSEVG 121 (237)
T ss_pred hhHHHHHHHHHHcCCCEEE--EcCC--c-------------------cCCCHHHHHHHHHHHHhCCCeEecccc
Confidence 4556666677777776655 3321 1 124778888999999999999998863
No 186
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=23.11 E-value=1.5e+02 Score=29.53 Aligned_cols=68 Identities=9% Similarity=-0.025 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHHHCCCcEEEEEecCCCCCcccCCCCCCcccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEE
Q 007722 197 VGDIMRTIYAMSANKMNVFHWHITDSPSFPLNLPSEPGLAAKGSYGDDMQYSPDDVKKIVEFGLDHGVRVI 267 (591)
Q Consensus 197 ~~~lk~~Id~ma~~KlN~lhlHltDd~~frle~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VI 267 (591)
.+.++++++.++.++ +.-++++-.-. ++...+|..+...-....-...|.++++++.+++++.|++++
T Consensus 178 ~~ei~~l~~~l~~l~-~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~~g~~~~ 245 (246)
T PRK11145 178 DDSAHRLGEFIKDMG-NIEKIELLPYH--ELGKHKWEAMGEEYKLDGVKPPSKETMERVKGILEQYGHKVM 245 (246)
T ss_pred HHHHHHHHHHHHhcC-CcceEEEecCC--ccchhHHHHcCCcccccCCCCCCHHHHHHHHHHHHHcCCccc
Confidence 468999999998764 33333332110 000011100100000011134699999999999999999874
No 187
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=22.79 E-value=1.2e+02 Score=33.46 Aligned_cols=85 Identities=20% Similarity=0.183 Sum_probs=0.0
Q ss_pred EecCCCCCcccceeCCCCCC---CChHHHHHHHHHHHHCC-----CcEEEEEecCCCC-CcccCCCCCCcccCCCCCCCC
Q 007722 175 VWDDPIFPHRGLLLDTSRNY---YGVGDIMRTIYAMSANK-----MNVFHWHITDSPS-FPLNLPSEPGLAAKGSYGDDM 245 (591)
Q Consensus 175 I~D~P~f~~RG~mlD~aR~f---~~~~~lk~~Id~ma~~K-----lN~lhlHltDd~~-frle~~~~P~Lt~~ga~~~~~ 245 (591)
|.+.+++ |+.||++.-| +.+.+...+-..|..+. =..-|+||.|+.+ +.=..+.+-.+-. |
T Consensus 297 v~~~~rl---GvCLDTcHafaAGydl~t~e~~~~~l~~f~~~iGl~rL~~vHLNDSk~~~GS~~DRH~~IG~-------G 366 (413)
T PTZ00372 297 VEDKSRV---GVCLDTCHLFAAGYDIRTKESFDKVMKEFDEIVGLKYLKAVHLNDSKSDLGSGLDRHENIGK-------G 366 (413)
T ss_pred cCCcCCe---EEEEEHHHHHhcCCCCCcHHHHHHHHHHHHHhcChhheeEEEEEcCCCccCCCcccccCcCC-------C
Q ss_pred CCCHHHHHHHHHHHHhcCCEEEEc
Q 007722 246 QYSPDDVKKIVEFGLDHGVRVIPE 269 (591)
Q Consensus 246 ~YT~~ei~eiv~yA~~rgI~VIPE 269 (591)
..-.+-++.|+...+-.+|-+|-|
T Consensus 367 ~Ig~~~f~~l~~~~~~~~iP~ILE 390 (413)
T PTZ00372 367 KLGMETFKFIMNSKYFKNIPIILE 390 (413)
T ss_pred CcChHHHHHHHhChhhCCCeEEEe
No 188
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=22.52 E-value=1.5e+02 Score=29.84 Aligned_cols=79 Identities=16% Similarity=0.131 Sum_probs=59.2
Q ss_pred ChHHHHHHHHHHHHCCCcEEEEEecCCCCCcc------cC-CCCCCcccCCCCCCCCCCCHHHH----------------
Q 007722 196 GVGDIMRTIYAMSANKMNVFHWHITDSPSFPL------NL-PSEPGLAAKGSYGDDMQYSPDDV---------------- 252 (591)
Q Consensus 196 ~~~~lk~~Id~ma~~KlN~lhlHltDd~~frl------e~-~~~P~Lt~~ga~~~~~~YT~~ei---------------- 252 (591)
+.+...++++.|..-++..+.+-++..++... +. +++|++. .|+ +..+|.+|+
T Consensus 25 ~~~~a~~~~~al~~gGi~~iEiT~~tp~a~~~i~~l~~~~~~~~p~~~-vGa---GTVl~~e~a~~a~~aGA~FiVsP~~ 100 (222)
T PRK07114 25 DVEVAKKVIKACYDGGARVFEFTNRGDFAHEVFAELVKYAAKELPGMI-LGV---GSIVDAATAALYIQLGANFIVTPLF 100 (222)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCcHHHHHHHHHHHHHhhCCCeE-Eee---EeCcCHHHHHHHHHcCCCEEECCCC
Confidence 67899999999999999999999876554431 11 4577764 454 245666665
Q ss_pred -HHHHHHHHhcCCEEEEccCCCCchhh
Q 007722 253 -KKIVEFGLDHGVRVIPEIDSPGHTGS 278 (591)
Q Consensus 253 -~eiv~yA~~rgI~VIPEID~PGH~~a 278 (591)
.+|+++|+++||-+||-+=||.-...
T Consensus 101 ~~~v~~~~~~~~i~~iPG~~TpsEi~~ 127 (222)
T PRK07114 101 NPDIAKVCNRRKVPYSPGCGSLSEIGY 127 (222)
T ss_pred CHHHHHHHHHcCCCEeCCCCCHHHHHH
Confidence 47889999999999999988865543
No 189
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=22.23 E-value=4.9e+02 Score=27.61 Aligned_cols=54 Identities=17% Similarity=0.207 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHHCCCcEEEEEecCCCCCcccCCCCCCcccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEEccCCCCch
Q 007722 197 VGDIMRTIYAMSANKMNVFHWHITDSPSFPLNLPSEPGLAAKGSYGDDMQYSPDDVKKIVEFGLDHGVRVIPEIDSPGHT 276 (591)
Q Consensus 197 ~~~lk~~Id~ma~~KlN~lhlHltDd~~frle~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPEID~PGH~ 276 (591)
.+.-+|=|..|..+++|++..+-.|. . .+=.+..+.-++-||=||-.++.|+.+
T Consensus 52 ~~~C~rDi~~l~~LgiNtIRVY~vdp-----------~---------------~nHd~CM~~~~~aGIYvi~Dl~~p~~s 105 (314)
T PF03198_consen 52 PEACKRDIPLLKELGINTIRVYSVDP-----------S---------------KNHDECMSAFADAGIYVILDLNTPNGS 105 (314)
T ss_dssp HHHHHHHHHHHHHHT-SEEEES---T-----------T---------------S--HHHHHHHHHTT-EEEEES-BTTBS
T ss_pred HHHHHHhHHHHHHcCCCEEEEEEeCC-----------C---------------CCHHHHHHHHHhCCCEEEEecCCCCcc
Confidence 46778999999999999999887652 1 123345555677899999999999443
No 190
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=22.18 E-value=79 Score=32.21 Aligned_cols=69 Identities=19% Similarity=0.381 Sum_probs=45.5
Q ss_pred CCCCCcccceeCCCCCCCChHHHHHHHHHHHHCCCcEEEEEecCCCCCcccCCCCCCcccCCCCCCCCCCCHHHHHHHHH
Q 007722 178 DPIFPHRGLLLDTSRNYYGVGDIMRTIYAMSANKMNVFHWHITDSPSFPLNLPSEPGLAAKGSYGDDMQYSPDDVKKIVE 257 (591)
Q Consensus 178 ~P~f~~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lhlHltDd~~frle~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~ 257 (591)
+||-.=-=+++|-+ +++..++.+++.++.| +..+-+ +|+....|..+-+++.++
T Consensus 8 KPR~~GlT~v~Dkg---lg~~~~~dlLe~ag~y-ID~~K~----------------------g~Gt~~l~~~~~l~eki~ 61 (244)
T PF02679_consen 8 KPRSRGLTMVIDKG---LGLRYLEDLLESAGDY-IDFLKF----------------------GWGTSALYPEEILKEKID 61 (244)
T ss_dssp SS-SSS-EEEEESS-----HHHHHHHHHHHGGG--SEEEE-----------------------TTGGGGSTCHHHHHHHH
T ss_pred CCCCCCcEEEecCC---CCHHHHHHHHHHhhhh-ccEEEe----------------------cCceeeecCHHHHHHHHH
Confidence 45544334578877 9999999999999876 122111 233345688899999999
Q ss_pred HHHhcCCEEEEccCCCCchh
Q 007722 258 FGLDHGVRVIPEIDSPGHTG 277 (591)
Q Consensus 258 yA~~rgI~VIPEID~PGH~~ 277 (591)
.|+++||.|. ||.+.
T Consensus 62 l~~~~gV~v~-----~GGtl 76 (244)
T PF02679_consen 62 LAHSHGVYVY-----PGGTL 76 (244)
T ss_dssp HHHCTT-EEE-----E-HHH
T ss_pred HHHHcCCeEe-----CCcHH
Confidence 9999999998 67764
No 191
>PLN02950 4-alpha-glucanotransferase
Probab=22.08 E-value=1.2e+02 Score=36.86 Aligned_cols=92 Identities=14% Similarity=0.225 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHhcCCEEEEccCCC-CchhhHHHhCchhhh------hcccccCcCCCCCCcccccCCCCCcCCCC--Chh
Q 007722 250 DDVKKIVEFGLDHGVRVIPEIDSP-GHTGSWAEAYPEIVT------CANMFWWPAESKGEDKLAAEPGTGQLNPL--NPK 320 (591)
Q Consensus 250 ~ei~eiv~yA~~rgI~VIPEID~P-GH~~a~~~~~pel~~------~~~~~~~~~~~~~~~~~~~~~~~~~L~~~--~~~ 320 (591)
+|++++.+||+++||.|+=.|-+- .|-++=.=++|++.. ++....-+.++.|+. | .+|+. ...
T Consensus 461 ~Ql~~~~~yA~~~Gi~L~GDLpigV~~dSaDvWa~p~lF~l~~~aGaPPD~Fs~~GQ~WG~-----P---~ynw~~l~~~ 532 (909)
T PLN02950 461 SQLSEAAEYARKKGVVLKGDLPIGVDRNSVDTWVYPNLFRMNTSTGAPPDYFDKNGQNWGF-----P---TYNWEEMSKD 532 (909)
T ss_pred HHHHHHHHHHHHCCCEEEEEeeceeCCCcHHHhcCHHHhcCCCccCCCCCcCCcccccCCC-----C---CcCHHHHHhc
Confidence 578899999999999987665432 232222224676642 222222345566664 1 24442 355
Q ss_pred HHHHHHHHHHHHHHhCCC----------CceecCCCCCC
Q 007722 321 TYQVFKNVISDVVKMFPE----------PFFHAGADEVT 349 (591)
Q Consensus 321 t~~fl~~ll~Ev~~lF~~----------~~iHIGgDEv~ 349 (591)
-|....+.++..+++|.. .++-|=.+++.
T Consensus 533 gy~ww~~Rlr~~~~~~d~lRIDH~~Gf~r~W~IP~~~~~ 571 (909)
T PLN02950 533 NYAWWRARLTQMAKYFTAYRIDHILGFFRIWELPAHAVT 571 (909)
T ss_pred CcHHHHHHHHHHHHhCCEEEEecchhhcEeeEecCCCcc
Confidence 788999999999998863 34555556553
No 192
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=22.08 E-value=90 Score=34.81 Aligned_cols=40 Identities=5% Similarity=0.080 Sum_probs=30.3
Q ss_pred CCCHHHHHHHHHHHHhcCCEEEEccCCCCchhhHHHhCch
Q 007722 246 QYSPDDVKKIVEFGLDHGVRVIPEIDSPGHTGSWAEAYPE 285 (591)
Q Consensus 246 ~YT~~ei~eiv~yA~~rgI~VIPEID~PGH~~a~~~~~pe 285 (591)
.++++++++|+++|++.|++++-|+...-.....+..-+.
T Consensus 142 ~L~~~~l~~l~~~a~~lGl~~lvEvh~~~El~~al~~~a~ 181 (454)
T PRK09427 142 VLDDEQYRQLAAVAHSLNMGVLTEVSNEEELERAIALGAK 181 (454)
T ss_pred hCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHhCCCC
Confidence 5789999999999999999999999555444434443333
No 193
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=21.95 E-value=1.4e+02 Score=32.02 Aligned_cols=23 Identities=13% Similarity=0.144 Sum_probs=21.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEE
Q 007722 245 MQYSPDDVKKIVEFGLDHGVRVI 267 (591)
Q Consensus 245 ~~YT~~ei~eiv~yA~~rgI~VI 267 (591)
..||.+++++|++.|+++++-||
T Consensus 180 ~~~s~~~~~~l~~~a~~~~~~ii 202 (388)
T PRK07366 180 AIAPLSFFQEAVAFCQQHDLVLV 202 (388)
T ss_pred ccCCHHHHHHHHHHHHHcCeEEE
Confidence 47899999999999999998777
No 194
>PRK05764 aspartate aminotransferase; Provisional
Probab=21.71 E-value=1.4e+02 Score=31.84 Aligned_cols=24 Identities=25% Similarity=0.688 Sum_probs=21.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEEE
Q 007722 245 MQYSPDDVKKIVEFGLDHGVRVIP 268 (591)
Q Consensus 245 ~~YT~~ei~eiv~yA~~rgI~VIP 268 (591)
..++.+++++|++.|+++||-||-
T Consensus 179 ~~~~~~~~~~l~~~a~~~~~~ii~ 202 (393)
T PRK05764 179 AVYSPEELEAIADVAVEHDIWVLS 202 (393)
T ss_pred cccCHHHHHHHHHHHHHCCcEEEE
Confidence 468999999999999999998883
No 195
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=21.32 E-value=8.2e+02 Score=25.57 Aligned_cols=124 Identities=14% Similarity=0.188 Sum_probs=64.5
Q ss_pred hHHHHHHHHHHHHCCCcEEEEEecCCCCCccc-CCCCCCcccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEEccCCCCc
Q 007722 197 VGDIMRTIYAMSANKMNVFHWHITDSPSFPLN-LPSEPGLAAKGSYGDDMQYSPDDVKKIVEFGLDHGVRVIPEIDSPGH 275 (591)
Q Consensus 197 ~~~lk~~Id~ma~~KlN~lhlHltDd~~frle-~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPEID~PGH 275 (591)
-+.++++++.+...++-+=-+|+.++ |--. -..+... .|. ...| -+.+++++.-+++|++|++-|+ |.-
T Consensus 28 q~~v~~~~~~~r~~~iP~d~i~ld~~--~~~~~~~~~~~f----~~d-~~~F--Pdp~~mi~~L~~~g~k~~~~i~-P~i 97 (317)
T cd06599 28 QEALLEFIDKCREHDIPCDSFHLSSG--YTSIEGGKRYVF----NWN-KDRF--PDPAAFVAKFHERGIRLAPNIK-PGL 97 (317)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEecc--ccccCCCceeee----ecC-cccC--CCHHHHHHHHHHCCCEEEEEeC-Ccc
Confidence 57899999999999998555555322 2100 0000000 011 1123 3678999999999999998774 322
Q ss_pred hhhHHHhCchhhhhcccccCcCCCCCCcc-cccCCC-CCcCCCCChhHHHHHHHHHHHHH
Q 007722 276 TGSWAEAYPEIVTCANMFWWPAESKGEDK-LAAEPG-TGQLNPLNPKTYQVFKNVISDVV 333 (591)
Q Consensus 276 ~~a~~~~~pel~~~~~~~~~~~~~~~~~~-~~~~~~-~~~L~~~~~~t~~fl~~ll~Ev~ 333 (591)
... ...|.|.... .+.+.+...-... ....+. ...+|.+||++.+...+.+++..
T Consensus 98 ~~~-~~~y~e~~~~--g~~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~ 154 (317)
T cd06599 98 LQD-HPRYKELKEA--GAFIKPPDGREPSIGQFWGGVGSFVDFTNPEGREWWKEGVKEAL 154 (317)
T ss_pred cCC-CHHHHHHHHC--CcEEEcCCCCCcceecccCCCeEeecCCChHHHHHHHHHHHHHH
Confidence 110 0123332210 1100110000000 000111 23689999999999999886654
No 196
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=21.19 E-value=1e+03 Score=25.40 Aligned_cols=138 Identities=16% Similarity=0.213 Sum_probs=79.8
Q ss_pred HHHHHHHHHCCCcEEEEEecCCCCCcccCCCCCCcccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEEccCCCCchh-hH
Q 007722 201 MRTIYAMSANKMNVFHWHITDSPSFPLNLPSEPGLAAKGSYGDDMQYSPDDVKKIVEFGLDHGVRVIPEIDSPGHTG-SW 279 (591)
Q Consensus 201 k~~Id~ma~~KlN~lhlHltDd~~frle~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPEID~PGH~~-a~ 279 (591)
+.+++.|+.+++|..-|++=-| |.- .++.+.++..++.+-|++.|+.|...+ |-. .|
T Consensus 27 ~d~~~ilk~~G~N~vRlRvwv~----------P~~--------~g~~~~~~~~~~akrak~~Gm~vlldf----HYSD~W 84 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRVWVN----------PYD--------GGYNDLEDVIALAKRAKAAGMKVLLDF----HYSDFW 84 (332)
T ss_dssp --HHHHHHHTT--EEEEEE-SS-----------TT--------TTTTSHHHHHHHHHHHHHTT-EEEEEE-----SSSS-
T ss_pred CCHHHHHHhcCCCeEEEEeccC----------Ccc--------cccCCHHHHHHHHHHHHHCCCeEEEee----cccCCC
Confidence 5688899999999999998433 111 246799999999999999999999665 211 11
Q ss_pred HHhCchhhhhcccccCcCCCCCCcccccCCCCCcCCCCChhHHHHHHHHHHHHHHhCCC-CceecCCCCCCC-CCCCCCH
Q 007722 280 AEAYPEIVTCANMFWWPAESKGEDKLAAEPGTGQLNPLNPKTYQVFKNVISDVVKMFPE-PFFHAGADEVTP-GCWKTDP 357 (591)
Q Consensus 280 ~~~~pel~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~ll~Ev~~lF~~-~~iHIGgDEv~~-~~w~~~p 357 (591)
. .|.-.. .| ..|.. ..++-....+|++.+++++++.+.=-. .++-|| -|+.. ..|....
T Consensus 85 a--DPg~Q~------~P--~aW~~--------~~~~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVG-NEin~Gmlwp~g~ 145 (332)
T PF07745_consen 85 A--DPGKQN------KP--AAWAN--------LSFDQLAKAVYDYTKDVLQALKAAGVTPDMVQVG-NEINNGMLWPDGK 145 (332)
T ss_dssp ---BTTB-B----------TTCTS--------SSHHHHHHHHHHHHHHHHHHHHHTT--ESEEEES-SSGGGESTBTTTC
T ss_pred C--CCCCCC------CC--ccCCC--------CCHHHHHHHHHHHHHHHHHHHHHCCCCccEEEeC-ccccccccCcCCC
Confidence 1 111000 01 12322 123334578899999999998775433 678887 56653 4563321
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHhcC
Q 007722 358 TIQSFLSNGGSLSQVLEKFVNETFPYIVSLN 388 (591)
Q Consensus 358 ~~~~~m~~~g~~~~l~~~f~~~~~~~l~~~g 388 (591)
..--+-+..+++...+-|++.+
T Consensus 146 ---------~~~~~~~a~ll~ag~~AVr~~~ 167 (332)
T PF07745_consen 146 ---------PSNWDNLAKLLNAGIKAVREVD 167 (332)
T ss_dssp ---------TT-HHHHHHHHHHHHHHHHTHS
T ss_pred ---------ccCHHHHHHHHHHHHHHHHhcC
Confidence 1112335677777777777643
No 197
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=21.06 E-value=98 Score=36.44 Aligned_cols=41 Identities=12% Similarity=0.225 Sum_probs=31.0
Q ss_pred CCCHHHHHHHHHHHHhcCCEEEEccCCCCchhhHHHhCchh
Q 007722 246 QYSPDDVKKIVEFGLDHGVRVIPEIDSPGHTGSWAEAYPEI 286 (591)
Q Consensus 246 ~YT~~ei~eiv~yA~~rgI~VIPEID~PGH~~a~~~~~pel 286 (591)
.++++++++|+++|++.|++++-|+-..-.....+++-+++
T Consensus 143 ~L~~~~l~~l~~~a~~lGme~LvEvh~~~el~~a~~~ga~i 183 (695)
T PRK13802 143 ALDDAQLKHLLDLAHELGMTVLVETHTREEIERAIAAGAKV 183 (695)
T ss_pred hcCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCE
Confidence 46889999999999999999999995554444444433333
No 198
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=21.04 E-value=1.3e+02 Score=32.33 Aligned_cols=35 Identities=20% Similarity=0.358 Sum_probs=31.4
Q ss_pred CCCHHHHHHHHHHHHhcCCEEEEccCCCCchhhHH
Q 007722 246 QYSPDDVKKIVEFGLDHGVRVIPEIDSPGHTGSWA 280 (591)
Q Consensus 246 ~YT~~ei~eiv~yA~~rgI~VIPEID~PGH~~a~~ 280 (591)
-+|.+|++|+++||.++|..+.--+++.=|....-
T Consensus 45 nfs~~~l~e~i~~ah~~gkk~~V~~N~~~~~~~~~ 79 (347)
T COG0826 45 NFSVEDLAEAVELAHSAGKKVYVAVNTLLHNDELE 79 (347)
T ss_pred cCCHHHHHHHHHHHHHcCCeEEEEeccccccchhh
Confidence 47999999999999999999999999998886544
No 199
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=20.44 E-value=2.8e+02 Score=29.78 Aligned_cols=101 Identities=14% Similarity=0.316 Sum_probs=62.2
Q ss_pred cEEEEecChhhhhHHHHHHHHHhcCCCcccccceEEecCCCCCcccceeCCCCCCCChHHHHHHHHHHHHCCCcEEEEEe
Q 007722 140 TANLTAETPWGAMRGLETFSQLVWGRPSRVPVGVYVWDDPIFPHRGLLLDTSRNYYGVGDIMRTIYAMSANKMNVFHWHI 219 (591)
Q Consensus 140 ~i~I~a~~~~G~~~g~~Tl~Ql~~~~~~~~p~~~~I~D~P~f~~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lhlHl 219 (591)
.|+|+- .|+.-++.-|.+. ..+..+ .+++ |+|.=+-|.-+.-+.++| |++.+.+.++......-..+.+.
T Consensus 190 ~itvST---~G~~~~i~~l~~~--~~~~~L--aiSL-hA~~~e~R~~l~Pi~~~~-~le~ll~al~~~~~~~~r~v~ie- 259 (342)
T PRK14465 190 RITIST---SGVVNGIRRFIEN--KEPYNF--AISL-NHPDPNGRLQIMDIEEKF-PLEELLQAAKDFTRELKRRITFE- 259 (342)
T ss_pred eEEEeC---CCchHHHHHHHhh--ccCceE--EEEe-cCCChhhcceEeeccccC-CHHHHHHHHHHHHHHcCCEEEEE-
Confidence 455543 2455555555442 112222 3444 899999999999888876 88888888876654322233222
Q ss_pred cCCCCCcccCCCCCCcccCCCCCCCCCCCHHHHHHHHHHHHh--cCCEEEEc
Q 007722 220 TDSPSFPLNLPSEPGLAAKGSYGDDMQYSPDDVKKIVEFGLD--HGVRVIPE 269 (591)
Q Consensus 220 tDd~~frle~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~--rgI~VIPE 269 (591)
+.-.|.++ =|.+++++|.++++. -+|++||-
T Consensus 260 ---------yvLI~GvN----------Ds~eda~~L~~ll~~l~~kVnLIPy 292 (342)
T PRK14465 260 ---------YVMIPGVN----------MGRENANKLVKIARSLDCKINVIPL 292 (342)
T ss_pred ---------EEEECCcc----------CCHHHHHHHHHHHhhCCCcEEEEcc
Confidence 12233333 288999999999998 46677754
No 200
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=20.27 E-value=1.9e+02 Score=31.07 Aligned_cols=55 Identities=15% Similarity=0.188 Sum_probs=38.1
Q ss_pred ChHHHHHHHHHHHHC-------CCcEEEEEecCCCCCcccCCCCCCcccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEE
Q 007722 196 GVGDIMRTIYAMSAN-------KMNVFHWHITDSPSFPLNLPSEPGLAAKGSYGDDMQYSPDDVKKIVEFGLDHGVRVI 267 (591)
Q Consensus 196 ~~~~lk~~Id~ma~~-------KlN~lhlHltDd~~frle~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VI 267 (591)
+.+.++++++.+... ++|.+-+|-.+.... .| ..-+++++..+.++.+++||.|.
T Consensus 262 s~e~a~~L~~~lk~l~~~~~~~~VnLIPyn~~~~~~~-----~~------------~~ps~e~v~~f~~~L~~~Gi~vt 323 (347)
T PRK14453 262 SKEHAEAVVGLLRNRGSWEHLYHVNLIPYNSTDKTPF-----KF------------QSSSAGQIKQFCSTLKSAGISVT 323 (347)
T ss_pred CHHHHHHHHHHHhhccccCCcceEEEecCCCCCCCCc-----cC------------CCCCHHHHHHHHHHHHHCCCcEE
Confidence 567888888888743 566666664432100 01 23489999999999999999987
No 201
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=20.01 E-value=2.9e+02 Score=26.64 Aligned_cols=46 Identities=13% Similarity=0.036 Sum_probs=33.8
Q ss_pred HHHHHHHCCCcEEEEEecCCCCCcccCCCCCCcccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEEccCCCC
Q 007722 203 TIYAMSANKMNVFHWHITDSPSFPLNLPSEPGLAAKGSYGDDMQYSPDDVKKIVEFGLDHGVRVIPEIDSPG 274 (591)
Q Consensus 203 ~Id~ma~~KlN~lhlHltDd~~frle~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPEID~PG 274 (591)
.++.+...+-+.+-.|... +...+.+++++|+++|+.+++++-.|.
T Consensus 68 ~~~~~~~~Gad~i~vh~~~--------------------------~~~~~~~~i~~~~~~g~~~~~~~~~~~ 113 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVA--------------------------DDATIKGAVKAAKKHGKEVQVDLINVK 113 (206)
T ss_pred HHHHHHHcCCCEEEEeccC--------------------------CHHHHHHHHHHHHHcCCEEEEEecCCC
Confidence 4666777777766666421 335789999999999999999864454
No 202
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=20.01 E-value=3.2e+02 Score=28.82 Aligned_cols=23 Identities=13% Similarity=0.073 Sum_probs=21.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEE
Q 007722 245 MQYSPDDVKKIVEFGLDHGVRVI 267 (591)
Q Consensus 245 ~~YT~~ei~eiv~yA~~rgI~VI 267 (591)
..++.+++++|++.|+++++-||
T Consensus 157 ~~~~~~~~~~i~~~a~~~~~~ii 179 (356)
T PRK08056 157 LLPERQLLQAIAERCKSLNIALI 179 (356)
T ss_pred CCCCHHHHHHHHHHHHhcCCEEE
Confidence 46899999999999999999887
Done!