BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007723
(591 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P42762|CLPD_ARATH Chaperone protein ClpD, chloroplastic OS=Arabidopsis thaliana
GN=CLPD PE=1 SV=1
Length = 945
Score = 783 bits (2022), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/550 (71%), Positives = 453/550 (82%), Gaps = 6/550 (1%)
Query: 40 FFNISMISHKVQFFHSNYTSNNNNCNPICARKRRKIIPISSVFERFTERAVKAVIFSQRE 99
+ IS+ + + F + T N RKR+K PIS+VFERFTERA++A+IFSQ+E
Sbjct: 42 YLGISLSNRTIHRFSTTPT----NLRRFPQRKRKKFTPISAVFERFTERAIRAIIFSQKE 97
Query: 100 AKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAVVSIWHSTNNQDTDDAAAQ 159
AKSLGKDMV+TQHLLLGLIAEDR P GFL SGITIDKAREAV SIW N+ D+ A
Sbjct: 98 AKSLGKDMVYTQHLLLGLIAEDRDPQGFLGSGITIDKAREAVWSIWDEANS-DSKQEEAS 156
Query: 160 GKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLG 219
+S + MPFSISTKRVFEAAVEYSR+ +IAPEHIA+GLFTVDDGSAGRVLKRLG
Sbjct: 157 STSYSKSTDMPFSISTKRVFEAAVEYSRTMDCQYIAPEHIAVGLFTVDDGSAGRVLKRLG 216
Query: 220 VDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSI-SGKTAALKSPGRTRASALEQFCV 278
++N L A A++RL+GE+AK+GREPS + S SG+ A G+ + LEQFCV
Sbjct: 217 ANMNLLTAAALTRLKGEIAKDGREPSSSSKGSFESPPSGRIAGSGPGGKKAKNVLEQFCV 276
Query: 279 DLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQA 338
DLTARASE LIDPVIGRE E+QR+IQILCRRTKNNPILLGE+GVGKTAIAEGLAI I +A
Sbjct: 277 DLTARASEGLIDPVIGREKEVQRVIQILCRRTKNNPILLGEAGVGKTAIAEGLAISIAEA 336
Query: 339 EVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSG 398
P FLL+KRIMSLD+GLLMAGAKERGELEARVT LISE++KSG VILFIDEVHTLIGSG
Sbjct: 337 SAPGFLLTKRIMSLDIGLLMAGAKERGELEARVTALISEVKKSGKVILFIDEVHTLIGSG 396
Query: 399 TVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPS 458
TVGRGNKG+GLDI+NLLKPSLGRGELQCIASTT DE R+QFEKDKALARRFQPVLI+EPS
Sbjct: 397 TVGRGNKGSGLDIANLLKPSLGRGELQCIASTTLDEFRSQFEKDKALARRFQPVLINEPS 456
Query: 459 QEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAH 518
+EDAV+ILLGLREKYEAHHNCK+T+EAI+AAV+LS+RYI+DR+LPDKAIDL+DEAGSRA
Sbjct: 457 EEDAVKILLGLREKYEAHHNCKYTMEAIDAAVYLSSRYIADRFLPDKAIDLIDEAGSRAR 516
Query: 519 IELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVES 578
IE F++KKE CILSKPP+DYWQEI+TVQAMHEVV SR K DD A ++ E+V ES
Sbjct: 517 IEAFRKKKEDAICILSKPPNDYWQEIKTVQAMHEVVLSSRQKQDDGDAISDESGELVEES 576
Query: 579 SLPSASDDDD 588
SLP A+ DD+
Sbjct: 577 SLPPAAGDDE 586
>sp|Q7XL03|CLPD2_ORYSJ Chaperone protein ClpD2, chloroplastic OS=Oryza sativa subsp.
japonica GN=CLPD2 PE=2 SV=2
Length = 937
Score = 644 bits (1662), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/497 (65%), Positives = 392/497 (78%), Gaps = 25/497 (5%)
Query: 76 IPISSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITID 135
+ + +VFERFTERAVKAV+FSQREA+ +G + V HLLLGL+AEDR P GFL SG+ ++
Sbjct: 65 VVVRAVFERFTERAVKAVVFSQREARGMGDETVAPHHLLLGLVAEDRSPLGFLASGVRVE 124
Query: 136 KAREAVVSIWHSTNNQDTDDAAAQGK------PFSSAAKMPFSISTKRVFEAAVEYSRSR 189
+AREA AA GK P A +PFS ++KRVFEAAVE+SR+
Sbjct: 125 RAREAC--------------RAAVGKEGLAQAPVGLATDVPFSGASKRVFEAAVEFSRNM 170
Query: 190 GYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKG 249
G NFI+PEHIALGLF ++D + VLK LGVD + LA A++R+QGELAK+GREP
Sbjct: 171 GCNFISPEHIALGLFNLNDPTTNNVLKSLGVDSSQLAKQALTRVQGELAKDGREPVGLSS 230
Query: 250 --VRENSI--SGKTAALKSPGRTR-ASALEQFCVDLTARASEELIDPVIGRETEIQRIIQ 304
VRE GK+A +K + + SAL FC+DLT RAS LIDPVIGR+ EI+R++Q
Sbjct: 231 FKVREKFTPGGGKSAIVKYSNKNKEKSALALFCLDLTMRASGGLIDPVIGRKDEIERVVQ 290
Query: 305 ILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKER 364
I+CRRTKNNPILLGE+GVGKTAIAEGLA +I +VP+FL+ KRI+SLD+ LLMAGAKER
Sbjct: 291 IICRRTKNNPILLGEAGVGKTAIAEGLAHKIANGDVPIFLVGKRILSLDVALLMAGAKER 350
Query: 365 GELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGEL 424
GELEARVT+LI E++K+GDVILFIDEVHTLIGSG GRG+KG GLDI+NLLKP+L RGEL
Sbjct: 351 GELEARVTSLIREVRKAGDVILFIDEVHTLIGSGIAGRGSKGAGLDIANLLKPALARGEL 410
Query: 425 QCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLE 484
QCIASTT DEHR F+KDKALARRFQPVL++EPSQEDAV+ILLGLREKYE +H CK+TLE
Sbjct: 411 QCIASTTLDEHRLHFDKDKALARRFQPVLVNEPSQEDAVKILLGLREKYETYHKCKYTLE 470
Query: 485 AINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEI 544
+INAAV+LSARYI+DR+LPDKAIDL+DEAGSRA +E FKRKKE+Q ILSK PD+YWQEI
Sbjct: 471 SINAAVYLSARYIADRHLPDKAIDLIDEAGSRARMESFKRKKEEQCSILSKSPDEYWQEI 530
Query: 545 RTVQAMHEVVQGSRLKY 561
R VQ MHEV +++KY
Sbjct: 531 RAVQNMHEVALTNKVKY 547
>sp|Q6H795|CLPD1_ORYSJ Chaperone protein ClpD1, chloroplastic OS=Oryza sativa subsp.
japonica GN=CLPD1 PE=2 SV=1
Length = 938
Score = 620 bits (1598), Expect = e-176, Method: Compositional matrix adjust.
Identities = 316/487 (64%), Positives = 381/487 (78%), Gaps = 14/487 (2%)
Query: 82 FERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAV 141
FERFTERAVKAV+ SQREAK LG+ V +HLLLGLIAEDR GFL SGI I++ARE
Sbjct: 74 FERFTERAVKAVVLSQREAKGLGEGAVAPRHLLLGLIAEDRSAGGFLSSGINIERAREEC 133
Query: 142 VSIWHSTNNQDTDDAAAQGKPFSSAAKM--PFSISTKRVFEAAVEYSRSRGYNFIAPEHI 199
I +D A P S +M PFS S KRVFE AVE+SR+ G +FI+PEH+
Sbjct: 134 RGI----GARDLTPGAPS--PSGSGLEMDIPFSGSCKRVFEVAVEFSRNMGCSFISPEHL 187
Query: 200 ALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVR----ENSI 255
AL LFT+DD + +L+ LG D + LA+VA++RLQ ELAK+ REP+ A + +
Sbjct: 188 ALALFTLDDPTTNSLLRSLGADPSQLASVALTRLQAELAKDCREPAGASSFKVPKKSPAG 247
Query: 256 SGKTAALKS-PGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP 314
+G++A KS + AL+QFC+DLT +AS IDP+IGRE EI+R++QI+CRRTKNNP
Sbjct: 248 AGRSAFSKSLNSKKEKGALDQFCLDLTTQASGGFIDPIIGREEEIERVVQIICRRTKNNP 307
Query: 315 ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTL 374
ILLGE+GVGKTAIAEGLA+RI +VP++L++KRIMSLD+GLL+AGAKERGELE+RVT+L
Sbjct: 308 ILLGEAGVGKTAIAEGLALRIANGDVPIYLVAKRIMSLDVGLLIAGAKERGELESRVTSL 367
Query: 375 ISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDE 434
I E++++GDVILFIDEVH LIGSGTVG+G KG GLDI NLLKP L RGELQCIA+TT DE
Sbjct: 368 IREVREAGDVILFIDEVHNLIGSGTVGKG-KGAGLDIGNLLKPPLARGELQCIAATTLDE 426
Query: 435 HRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494
HR FEKDKALARRFQPVL+ EPSQ+DAV+ILLGLREKYE +H CKFTLEAINAAV+LSA
Sbjct: 427 HRMHFEKDKALARRFQPVLVEEPSQDDAVKILLGLREKYETYHKCKFTLEAINAAVYLSA 486
Query: 495 RYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVV 554
RYI DR LPDKAIDL+DEAGSRA +E F RKKE Q+ IL K PD+YWQEIR Q MHEVV
Sbjct: 487 RYIPDRQLPDKAIDLIDEAGSRARMESFNRKKEGQSSILLKSPDEYWQEIRAAQNMHEVV 546
Query: 555 QGSRLKY 561
+++KY
Sbjct: 547 SSNQMKY 553
>sp|Q9TM05|CLPC_CYACA ATP-dependent Clp protease ATP-binding subunit clpA homolog
OS=Cyanidium caldarium GN=clpC PE=3 SV=1
Length = 854
Score = 366 bits (940), Expect = e-100, Method: Compositional matrix adjust.
Identities = 205/474 (43%), Positives = 288/474 (60%), Gaps = 46/474 (9%)
Query: 52 FFHSNYTSNNNNCNPICARKRRKIIPISSVFERFTERAVKAVIFSQREAKSLGKDMVFTQ 111
F + T N N +C ++ ++FERFTE+AVK ++ +Q EA+ LG + V T+
Sbjct: 9 FLKAMLTLLNIKGNNMCWAHKK------NMFERFTEKAVKVIMLAQEEARRLGHNFVGTE 62
Query: 112 HLLLGLIAEDR--HPNGFLESGITIDKAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKM 169
+LLG++ E GIT+ AR V I +G F A ++
Sbjct: 63 QILLGILGEGTGLAAKALKSMGITLKDARIEVEKII------------GRGSGFV-AIEI 109
Query: 170 PFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVA 229
PF+ K++ E A+E SR +N++ EH+ LGL +G A RVL+ LGVD+ L +
Sbjct: 110 PFTPRAKKILELAIEESRILTHNYVGTEHLLLGLIKEGEGVAARVLENLGVDLPKLRS-N 168
Query: 230 VSRLQGELAKEGREPSLAKGVRENSISGKTAALKSPGRTRASALEQFCVDLTARASEELI 289
+ R+ GE + + + + GR++ LE+F +LT A E +
Sbjct: 169 IIRMIGE-------------------TSEVSVGATSGRSKVPTLEEFGTNLTQMAVEGKL 209
Query: 290 DPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRI 349
DPV+GR EI+R++QIL RRTKNNP+L+GE GVGKTAIAEGLA RI+ EVP L K++
Sbjct: 210 DPVVGRAKEIERVVQILGRRTKNNPVLIGEPGVGKTAIAEGLAQRIINNEVPDTLEDKKV 269
Query: 350 MSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGL 409
++LD+ LL+AG K RGE E R+ ++ EI+ + +VIL IDEVHTLIG+G +
Sbjct: 270 ITLDVSLLVAGTKYRGEFEERLKKIMDEIRMADNVILVIDEVHTLIGAGAA-----EGAI 324
Query: 410 DISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGL 469
D +N+LKP+L RGELQCI +TT +E+R EKD AL RRFQPV++ EP+ E+ + IL GL
Sbjct: 325 DAANILKPALARGELQCIGATTLEEYRKHIEKDAALERRFQPVMVEEPTVEETIEILRGL 384
Query: 470 REKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFK 523
R++YEAHH K + AI AA LS +YI+DR+LPDKAIDLVDEA SR + +K
Sbjct: 385 RDRYEAHHRLKISDSAIVAAAKLSDQYIADRFLPDKAIDLVDEASSRVRLMNYK 438
>sp|O78410|CLPC_GUITH ATP-dependent Clp protease ATP-binding subunit clpA homolog
OS=Guillardia theta GN=clpC PE=3 SV=1
Length = 819
Score = 363 bits (932), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 200/439 (45%), Positives = 283/439 (64%), Gaps = 36/439 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E +GI +
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEG--------TGIAAKVLKSM 52
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
V++ + + + +G F A ++PF+ KRV E ++E +R G+N+I EH+
Sbjct: 53 GVNLKDA--RVEVEKIIGRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEHLL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A RVL+ L +D+ + V RL G+ A+ ++ +G+T
Sbjct: 110 LGLIREGEGVAARVLENLALDLTKVRT-QVIRLLGDTAEV------------SATNGQTK 156
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
K+P LE+F +LT +A+E +DPVIGR+ EI+R+IQIL RRTKNNPIL+GE
Sbjct: 157 G-KTP------TLEEFGSNLTQKAAEGKLDPVIGRQKEIERVIQILGRRTKNNPILIGEP 209
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA RI +VP L KR+++LD+GLL+AG K RGE E R+ +I EI+
Sbjct: 210 GVGKTAIAEGLAQRINNRDVPDILEDKRVVTLDIGLLVAGTKYRGEFEERLKKIIDEIRV 269
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+ +VIL IDEVHTLIG+G +D +N+LKP+L RGE+QCI +TT +E+R E
Sbjct: 270 ANNVILVIDEVHTLIGAGAA-----EGAIDAANILKPALARGEMQCIGATTLEEYRKHIE 324
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQPV++ EPS E+ + IL GLR++YE HH + EA++AA + +YI+DR
Sbjct: 325 KDSALERRFQPVMVGEPSVEETIEILYGLRDRYEKHHKLVISDEALSAAAKFADQYIADR 384
Query: 501 YLPDKAIDLVDEAGSRAHI 519
+LPDKAIDL+DEAGSR +
Sbjct: 385 FLPDKAIDLIDEAGSRVRL 403
>sp|P37571|CLPC_BACSU Negative regulator of genetic competence ClpC/MecB OS=Bacillus
subtilis (strain 168) GN=clpC PE=1 SV=1
Length = 810
Score = 361 bits (926), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 203/442 (45%), Positives = 278/442 (62%), Gaps = 36/442 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F RFTERA K + +Q EA LG + + T+H+LLGL+ E GI KA +A
Sbjct: 2 MFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREG--------EGIAA-KALQA 52
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+ + ++ + +G+ S + ++ K+V E +++ +R G++++ EHI
Sbjct: 53 L-GLGSEKIQKEVESLIGRGQEMSQT--IHYTPRAKKVIELSMDEARKLGHSYVGTEHIL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL +G A RVL LGV +N A V +L G N A
Sbjct: 110 LGLIREGEGVAARVLNNLGVSLNK-ARQQVLQLLGS----------------NETGSSAA 152
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
S T L+ DLTA A E+ +DPVIGR EIQR+I++L RRTKNNP+L+GE
Sbjct: 153 GTNSNANT--PTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEP 210
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA +I+ EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI++
Sbjct: 211 GVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQ 270
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R E
Sbjct: 271 AGNIILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDEYRKYIE 325
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQP+ + +PS +++++IL GLR++YEAHH T +AI AAV LS RYISDR
Sbjct: 326 KDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDR 385
Query: 501 YLPDKAIDLVDEAGSRAHIELF 522
+LPDKAIDL+DEAGS+ + F
Sbjct: 386 FLPDKAIDLIDEAGSKVRLRSF 407
>sp|P31541|CLPAA_SOLLC ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4A,
chloroplastic OS=Solanum lycopersicum GN=CD4A PE=3 SV=1
Length = 926
Score = 358 bits (919), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 213/448 (47%), Positives = 286/448 (63%), Gaps = 38/448 (8%)
Query: 74 KIIPISSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH-PNGFLES-G 131
+ +P ++FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G
Sbjct: 87 RFVP-KAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMG 145
Query: 132 ITIDKAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGY 191
I + AR V I +G F A ++PF+ KRV E ++E +R G+
Sbjct: 146 INLKDARVEVEKII------------GRGSGFI-AVEIPFTPRAKRVLELSLEEARQLGH 192
Query: 192 NFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVR 251
N+I EH+ LGL +G A RVL+ LG D ++ V R+ GE S A G
Sbjct: 193 NYIGSEHLLLGLLREGEGVAARVLENLGADPTNIR-TQVIRMVGE-------SSEAVGA- 243
Query: 252 ENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTK 311
S+ G T+ LK P LE++ +LT A E +DPV+GR+ +I+R+ QIL RRTK
Sbjct: 244 --SVGGGTSGLKMP------TLEEYGTNLTKLAEEGKLDPVVGRQAQIERVTQILGRRTK 295
Query: 312 NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARV 371
NNP L+GE GVGKTAIAEGLA RI +VP + K++++LDMGLL+AG K RGE E R+
Sbjct: 296 NNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERL 355
Query: 372 TTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTT 431
L+ EI++S ++ILFIDEVHTLIG+G +D +N+LKP+L RGELQCI +TT
Sbjct: 356 KKLMEEIKQSDEIILFIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATT 410
Query: 432 QDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVH 491
DE+R EKD AL RRFQPV + EPS ++ ++IL GLRE+YE HH +T EAI AA
Sbjct: 411 LDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLHYTDEAIEAAAK 470
Query: 492 LSARYISDRYLPDKAIDLVDEAGSRAHI 519
LS +YISDR+LPDKAIDL+DEAGSR +
Sbjct: 471 LSHQYISDRFLPDKAIDLIDEAGSRVRL 498
>sp|Q8EU05|CLPB_OCEIH Chaperone protein ClpB OS=Oceanobacillus iheyensis (strain DSM
14371 / JCM 11309 / KCTC 3954 / HTE831) GN=clpB PE=3
SV=1
Length = 809
Score = 358 bits (919), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 200/444 (45%), Positives = 271/444 (61%), Gaps = 37/444 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDR--HPNGFLESGITIDKAR 138
+F RFTERA K + SQ EA LG + + T+H+LLGL+ E G+ + K +
Sbjct: 2 MFGRFTERAQKVLALSQEEAVRLGHNNIGTEHILLGLVREGEGIAAKALQSLGLEVSKIQ 61
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
E V + +P S P K+V E + + +R G++++ EH
Sbjct: 62 EEVEKLI-----------GVGKQPTQSIHYTP---RAKKVVELSQDEARKLGHSYVGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A RVL LGV +N + L ++ GR+ SG+
Sbjct: 108 ILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNESQAGRQGR----------SGQ 157
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ +P L+ DLT A E IDPVIGR EI+R+IQ+L RRTKNNP+L+G
Sbjct: 158 QSNASTP------TLDSLARDLTVSAKEGKIDPVIGRSKEIERVIQVLSRRTKNNPVLIG 211
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+AEGLA +I+ EVP L KR+M+LDMG ++AG K RGE E R+ ++ EI
Sbjct: 212 EPGVGKTAVAEGLAQQIIDNEVPETLRDKRVMTLDMGTVVAGTKYRGEFEDRLKKVMEEI 271
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
+++G++ILFIDE+HTLIG+G G +G +D SN+LKPSL RGELQCI +TT DE+R
Sbjct: 272 RQAGNIILFIDELHTLIGAG----GAEG-AIDASNILKPSLARGELQCIGATTLDEYRKY 326
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQP+ + EP+ E+ ++IL GLR++YEAHH T EAI AA LS RYI+
Sbjct: 327 IEKDAALERRFQPIQVDEPTLEETIQILNGLRDRYEAHHRVTITDEAIEAAASLSDRYIT 386
Query: 499 DRYLPDKAIDLVDEAGSRAHIELF 522
DR+LPDKAIDL+DEAGS+ + +
Sbjct: 387 DRFLPDKAIDLIDEAGSKVRLRSY 410
>sp|P35100|CLPC_PEA Chaperone protein ClpC, chloroplastic OS=Pisum sativum PE=2 SV=1
Length = 922
Score = 356 bits (913), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 214/488 (43%), Positives = 297/488 (60%), Gaps = 40/488 (8%)
Query: 37 MSSFFNISMISHKVQFFHSNYTSNNNNCNPICARKRR--KIIPISSVFERFTERAVKAVI 94
MS F + +H ++ + +R+ R + IP ++FERFTE+A+K ++
Sbjct: 46 MSGFSGLRTFNHLNTMMRPGLDFHSKVSKAVSSRRARAKRFIP-RAMFERFTEKAIKVIM 104
Query: 95 FSQREAKSLGKDMVFTQHLLLGLIAEDRH-PNGFLES-GITIDKAREAVVSIWHSTNNQD 152
+Q EA+ LG + V T+ +LLGLI E L+S GI + AR V I
Sbjct: 105 LAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKII------- 157
Query: 153 TDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAG 212
+G F A ++PF+ KRV E + E +R G+N+I EH+ LGL +G A
Sbjct: 158 -----GRGSGFV-AVEIPFTPRAKRVLELSQEEARQLGHNYIGSEHLLLGLLREGEGVAA 211
Query: 213 RVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTAALKSPGRTRASA 272
RVL+ LG D ++ V R+ GE A +S++ + S +T
Sbjct: 212 RVLENLGADPTNIRT-QVIRMVGESA--------------DSVTATVGSGSSNNKT--PT 254
Query: 273 LEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLA 332
LE++ +LT A E +DPV+GR+ +I+R+ QIL RRTKNNP L+GE GVGKTAIAEGLA
Sbjct: 255 LEEYGTNLTKLAEEGKLDPVVGRQPQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLA 314
Query: 333 IRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVH 392
RI +VP + K++++LDMGLL+AG K RGE E R+ L+ EI++S D+ILFIDEVH
Sbjct: 315 QRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDDIILFIDEVH 374
Query: 393 TLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPV 452
TLIG+G +D +N+LKP+L RGELQCI +TT DE+R EKD L RRFQPV
Sbjct: 375 TLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPDLERRFQPV 429
Query: 453 LISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDE 512
+ EP+ ++ ++IL GLRE+YE HH ++T EA+ AA LS +YISDR+LPDKAIDLVDE
Sbjct: 430 KVPEPTVDETIQILKGLRERYEIHHKLRYTDEALIAAAQLSYQYISDRFLPDKAIDLVDE 489
Query: 513 AGSRAHIE 520
AGSR ++
Sbjct: 490 AGSRVRLQ 497
>sp|Q1XDF4|CLPC_PORYE ATP-dependent Clp protease ATP-binding subunit clpA homolog
OS=Porphyra yezoensis GN=clpC PE=3 SV=1
Length = 821
Score = 355 bits (910), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 198/439 (45%), Positives = 278/439 (63%), Gaps = 33/439 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGL+ E +GI +
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLVGEG--------TGIAAQVLKSM 52
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
V++ + + + +G F A ++PF+ KRV E ++E +R G+N+I EH+
Sbjct: 53 NVNLKDA--RVEVEKIIGRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEHLL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
+GL +G A RVL+ L VDV+ + A + L GE A E ++SG
Sbjct: 110 MGLVREGEGVAARVLENLAVDVSSIRAEVIQML-GENA-------------EANVSGSNT 155
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
+ R++ LE+F +LT A E +DPV+GR+ EI+R+IQIL RRTKNNP+L+GE
Sbjct: 156 ---TQARSKTPTLEEFGSNLTQMAMEGGLDPVVGRQKEIERVIQILGRRTKNNPVLIGEP 212
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA RI +VP L K +++LD+GLL+AG K RGE E R+ ++ EI+
Sbjct: 213 GVGKTAIAEGLAQRIANRDVPSILEDKLVITLDVGLLVAGTKYRGEFEERLKRIMDEIKS 272
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+ +VIL IDEVHTLIG+G +D +NLLKP+L RGELQCI +TT +E+R E
Sbjct: 273 ADNVILVIDEVHTLIGAGAA-----EGAIDAANLLKPALARGELQCIGATTLEEYRKHIE 327
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQPV++ EPS E+ + IL GLR++YE HH + A+ AA + +YISDR
Sbjct: 328 KDPALERRFQPVVVGEPSVEETIEILFGLRDRYEKHHQLTMSDGALAAAAKYANQYISDR 387
Query: 501 YLPDKAIDLVDEAGSRAHI 519
+LPDKAIDL+DEAGSR +
Sbjct: 388 FLPDKAIDLIDEAGSRVRL 406
>sp|P51332|CLPC_PORPU ATP-dependent Clp protease ATP-binding subunit clpA homolog
OS=Porphyra purpurea GN=clpC PE=3 SV=1
Length = 821
Score = 354 bits (909), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 198/439 (45%), Positives = 278/439 (63%), Gaps = 33/439 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGL+ E +GI +
Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLVGEG--------TGIAAQVLKSM 52
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
V++ + + + +G F A ++PF+ KRV E ++E +R G+N+I EH+
Sbjct: 53 NVNLKDA--RVEVEKIIGRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEHLL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
+GL +G A RVL+ L VDV+ + A + L GE A E ++SG A
Sbjct: 110 MGLVREGEGVAARVLENLAVDVSSIRAEVIQML-GENA-------------EANVSGSNA 155
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
+ R++ LE+F +LT A E +DPV+GR+ EI+R+IQIL RRTKNNP+L+GE
Sbjct: 156 ---TQARSKTPTLEEFGSNLTQMAIEGGLDPVVGRQKEIERVIQILGRRTKNNPVLIGEP 212
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA RI +VP L K +++LD+GLL+AG K RGE E R+ ++ EI+
Sbjct: 213 GVGKTAIAEGLAQRIANRDVPSILEDKLVITLDVGLLVAGTKYRGEFEERLKRIMDEIKS 272
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+ +VIL IDEVHTLIG+G +D +NLLKP+L RGELQCI +TT +E+R E
Sbjct: 273 ADNVILVIDEVHTLIGAGAA-----EGAIDAANLLKPALARGELQCIGATTLEEYRKHIE 327
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRF PV++ EPS E+ + IL GLR++YE HH + A+ AA + +YISDR
Sbjct: 328 KDPALERRFHPVVVGEPSVEETIEILFGLRDRYEKHHQLTMSDGALAAAAKYANQYISDR 387
Query: 501 YLPDKAIDLVDEAGSRAHI 519
+LPDKAIDL+DEAGSR +
Sbjct: 388 FLPDKAIDLIDEAGSRVRL 406
>sp|Q9FI56|CLPC1_ARATH Chaperone protein ClpC1, chloroplastic OS=Arabidopsis thaliana
GN=CLPC1 PE=1 SV=1
Length = 929
Score = 352 bits (903), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 211/471 (44%), Positives = 292/471 (61%), Gaps = 43/471 (9%)
Query: 51 QFFHSNYTSNNNNCNPICARKRRKIIPISSVFERFTERAVKAVIFSQREAKSLGKDMVFT 110
Q FHS N +R + ++FERFTE+A+K ++ +Q EA+ LG + V T
Sbjct: 69 QDFHSKVRQAMNVPKGKASR-----FTVKAMFERFTEKAIKVIMLAQEEARRLGHNFVGT 123
Query: 111 QHLLLGLIAEDRH-PNGFLES-GITIDKAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAK 168
+ +LLGLI E L+S GI + AR V I +G F A +
Sbjct: 124 EQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKII------------GRGSGFV-AVE 170
Query: 169 MPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAV 228
+PF+ KRV E ++E +R G+N+I EH+ LGL +G A RVL+ LG D +++
Sbjct: 171 IPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRT- 229
Query: 229 AVSRLQGELAKEGREPSLAKGVRENSISGKTAALKSPGRTRASALEQFCVDLTARASEEL 288
V R+ GE V N + G +++ K P LE++ +LT A E
Sbjct: 230 QVIRMVGE----------NNEVTAN-VGGGSSSNKMP------TLEEYGTNLTKLAEEGK 272
Query: 289 IDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKR 348
+DPV+GR+ +I+R++QIL RRTKNNP L+GE GVGKTAIAEGLA RI +VP + K+
Sbjct: 273 LDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPETIEGKK 332
Query: 349 IMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTG 408
+++LDMGLL+AG K RGE E R+ L+ EI++S ++ILFIDEVHTLIG+G
Sbjct: 333 VITLDMGLLVAGTKYRGEFEERLKKLMEEIRQSDEIILFIDEVHTLIGAGAA-----EGA 387
Query: 409 LDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLG 468
+D +N+LKP+L RGELQCI +TT DE+R EKD AL RRFQPV + EP+ ++ ++IL G
Sbjct: 388 IDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPTVDETIQILKG 447
Query: 469 LREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHI 519
LRE+YE HH ++T E++ AA LS +YISDR+LPDKAIDL+DEAGSR +
Sbjct: 448 LRERYEIHHKLRYTDESLVAAAQLSYQYISDRFLPDKAIDLIDEAGSRVRL 498
>sp|P31542|CLPAB_SOLLC ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,
chloroplastic OS=Solanum lycopersicum GN=CD4B PE=3 SV=1
Length = 923
Score = 352 bits (902), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 208/448 (46%), Positives = 286/448 (63%), Gaps = 38/448 (8%)
Query: 74 KIIPISSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH-PNGFLES-G 131
+ +P ++FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S G
Sbjct: 85 RFVP-KAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMG 143
Query: 132 ITIDKAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGY 191
I + AR V I +G F A ++PF+ KRV E ++E +R G+
Sbjct: 144 INLKDARVEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGH 190
Query: 192 NFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVR 251
N+I EH+ LGL +G A RVL+ LG D +++ V R+ GE + A G
Sbjct: 191 NYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRT-QVIRMVGE-------SNEAVGA- 241
Query: 252 ENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTK 311
S+ G T+ K P LE++ +LT A E +DPV+GR+ +I+R+ QIL RRTK
Sbjct: 242 --SVGGGTSGQKMP------TLEEYGTNLTKLAEEGKLDPVVGRQPQIERVTQILGRRTK 293
Query: 312 NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARV 371
NNP L+GE GVGKTAIAEGLA RI +VP + K++++LDMGLL+AG K RGE E R+
Sbjct: 294 NNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERL 353
Query: 372 TTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTT 431
L+ EI++S ++ILFIDEVHTLIG+G +D +N+LKP+L RGELQCI +TT
Sbjct: 354 KKLMEEIKQSDEIILFIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATT 408
Query: 432 QDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVH 491
DE+R EKD AL RRFQPV + EP+ ++ ++IL GLRE+YE HH ++T E + AA
Sbjct: 409 LDEYRKHIEKDPALERRFQPVKVPEPTVDETIQILKGLRERYEIHHKLRYTDEDLVAAAQ 468
Query: 492 LSARYISDRYLPDKAIDLVDEAGSRAHI 519
LS +YISDR+LPDKAIDL+DEAGSR +
Sbjct: 469 LSYQYISDRFLPDKAIDLIDEAGSRVRL 496
>sp|Q9SXJ7|CLPC2_ARATH Chaperone protein ClpC2, chloroplastic OS=Arabidopsis thaliana
GN=CLPC2 PE=2 SV=1
Length = 952
Score = 350 bits (899), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 201/440 (45%), Positives = 281/440 (63%), Gaps = 33/440 (7%)
Query: 80 SVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKARE 139
++FERFTE+A+K ++ SQ EA+ LG + V T+ +LLGLI E +GI +
Sbjct: 113 AMFERFTEKAIKVIMLSQEEARRLGHNFVGTEQILLGLIGEG--------TGIAAKVLKS 164
Query: 140 AVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHI 199
+++ S + + +G F A ++PF+ KRV E ++E +R G+N+I EH+
Sbjct: 165 MGINLKDS--RVEVEKIIGRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHL 221
Query: 200 ALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKT 259
LGL +G A RVL+ LG D +++ V R+ GE N ++
Sbjct: 222 LLGLLREGEGVAARVLENLGADPSNIR-TQVIRMVGE---------------NNEVTASV 265
Query: 260 AALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGE 319
S ++ LE++ +LT A E +DPV+GR+ +I+R++QIL RRTKNNP L+GE
Sbjct: 266 GGGSSG-NSKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILARRTKNNPCLIGE 324
Query: 320 SGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ 379
GVGKTAIAEGLA RI +VP + K +++LDMGLL+AG K RGE E R+ L+ EI+
Sbjct: 325 PGVGKTAIAEGLAQRIASGDVPETIEGKTVITLDMGLLVAGTKYRGEFEERLKKLMEEIR 384
Query: 380 KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQF 439
+S ++ILFIDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 385 QSDEIILFIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTIDEYRKHI 439
Query: 440 EKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499
EKD AL RRFQPV + EP+ E+A++IL GLRE+YE HH ++T EA+ AA LS +YISD
Sbjct: 440 EKDPALERRFQPVKVPEPTVEEAIQILQGLRERYEIHHKLRYTDEALVAAAQLSHQYISD 499
Query: 500 RYLPDKAIDLVDEAGSRAHI 519
R+LPDKAIDL+DEAGSR +
Sbjct: 500 RFLPDKAIDLIDEAGSRVRL 519
>sp|Q6GBW3|CLPC_STAAS ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain MSSA476) GN=clpC PE=3
SV=1
Length = 818
Score = 349 bits (896), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 206/446 (46%), Positives = 273/446 (61%), Gaps = 48/446 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGF----LES-GITID 135
+F R TERA + + +Q EA L + T+HLLLGL+ E P G LES IT D
Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKE---PEGIAAKVLESFNITED 58
Query: 136 KAREAVVS-IWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFI 194
K E V I H ++ T + ++ K+V E +++ +R +NF+
Sbjct: 59 KVIEEVEKLIGHGQDHVGT---------------LHYTPRAKKVIELSMDEARKLHHNFV 103
Query: 195 APEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENS 254
EHI LGL ++G A RV L D+N +++ + ++ K P ++ + S
Sbjct: 104 GTEHILLGLIRENEGVAARVFANL--DLN------ITKARAQVVKALGNPEMSNKNAQAS 155
Query: 255 ISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP 314
S T L S R DLT A + +DPVIGR+ EI R+I++L RRTKNNP
Sbjct: 156 KSNNTPTLDSLAR-----------DLTVIAKDGTLDPVIGRDKEITRVIEVLSRRTKNNP 204
Query: 315 ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTL 374
+L+GE GVGKTAIAEGLA IV EVP L KR+MSLDMG ++AG K RGE E R+ +
Sbjct: 205 VLIGEPGVGKTAIAEGLAQAIVNNEVPETLKDKRVMSLDMGTVVAGTKYRGEFEERLKKV 264
Query: 375 ISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDE 434
+ EIQ++G+VILFIDE+HTL+G+G G +G +D SN+LKP+L RGELQCI +TT DE
Sbjct: 265 MEEIQQAGNVILFIDELHTLVGAG----GAEG-AIDASNILKPALARGELQCIGATTLDE 319
Query: 435 HRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494
+R EKD AL RRFQPV + EPS D V IL GLR++YEAHH + EAI AAV LS
Sbjct: 320 YRKNIEKDAALERRFQPVQVDEPSVVDTVAILKGLRDRYEAHHRINISDEAIEAAVKLSN 379
Query: 495 RYISDRYLPDKAIDLVDEAGSRAHIE 520
RY+SDR+LPDKAIDL+DEA S+ ++
Sbjct: 380 RYVSDRFLPDKAIDLIDEASSKVRLK 405
>sp|Q6GJE4|CLPC_STAAR ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain MRSA252) GN=clpC PE=3
SV=1
Length = 818
Score = 349 bits (896), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 206/446 (46%), Positives = 273/446 (61%), Gaps = 48/446 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGF----LES-GITID 135
+F R TERA + + +Q EA L + T+HLLLGL+ E P G LES IT D
Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKE---PEGIAAKVLESFNITED 58
Query: 136 KAREAVVS-IWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFI 194
K E V I H ++ T + ++ K+V E +++ +R +NF+
Sbjct: 59 KVIEEVEKLIGHGQDHVGT---------------LHYTPRAKKVIELSMDEARKLHHNFV 103
Query: 195 APEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENS 254
EHI LGL ++G A RV L D+N +++ + ++ K P ++ + S
Sbjct: 104 GTEHILLGLIRENEGVAARVFANL--DLN------ITKARAQVVKALGNPEMSNKNAQAS 155
Query: 255 ISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP 314
S T L S R DLT A + +DPVIGR+ EI R+I++L RRTKNNP
Sbjct: 156 KSNNTPTLDSLAR-----------DLTVIAKDGTLDPVIGRDKEITRVIEVLSRRTKNNP 204
Query: 315 ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTL 374
+L+GE GVGKTAIAEGLA IV EVP L KR+MSLDMG ++AG K RGE E R+ +
Sbjct: 205 VLIGEPGVGKTAIAEGLAQAIVNNEVPETLKDKRVMSLDMGTVVAGTKYRGEFEERLKKV 264
Query: 375 ISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDE 434
+ EIQ++G+VILFIDE+HTL+G+G G +G +D SN+LKP+L RGELQCI +TT DE
Sbjct: 265 MEEIQQAGNVILFIDELHTLVGAG----GAEG-AIDASNILKPALARGELQCIGATTLDE 319
Query: 435 HRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494
+R EKD AL RRFQPV + EPS D V IL GLR++YEAHH + EAI AAV LS
Sbjct: 320 YRKNIEKDAALERRFQPVQVDEPSVVDTVAILKGLRDRYEAHHRINISDEAIEAAVKLSN 379
Query: 495 RYISDRYLPDKAIDLVDEAGSRAHIE 520
RY+SDR+LPDKAIDL+DEA S+ ++
Sbjct: 380 RYVSDRFLPDKAIDLIDEASSKVRLK 405
>sp|Q7A797|CLPC_STAAN ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain N315) GN=clpC PE=1 SV=1
Length = 818
Score = 349 bits (896), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 206/446 (46%), Positives = 273/446 (61%), Gaps = 48/446 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGF----LES-GITID 135
+F R TERA + + +Q EA L + T+HLLLGL+ E P G LES IT D
Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKE---PEGIAAKVLESFNITED 58
Query: 136 KAREAVVS-IWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFI 194
K E V I H ++ T + ++ K+V E +++ +R +NF+
Sbjct: 59 KVIEEVEKLIGHGQDHVGT---------------LHYTPRAKKVIELSMDEARKLHHNFV 103
Query: 195 APEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENS 254
EHI LGL ++G A RV L D+N +++ + ++ K P ++ + S
Sbjct: 104 GTEHILLGLIRENEGVAARVFANL--DLN------ITKARAQVVKALGNPEMSNKNAQAS 155
Query: 255 ISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP 314
S T L S R DLT A + +DPVIGR+ EI R+I++L RRTKNNP
Sbjct: 156 KSNNTPTLDSLAR-----------DLTVIAKDGTLDPVIGRDKEITRVIEVLSRRTKNNP 204
Query: 315 ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTL 374
+L+GE GVGKTAIAEGLA IV EVP L KR+MSLDMG ++AG K RGE E R+ +
Sbjct: 205 VLIGEPGVGKTAIAEGLAQAIVNNEVPETLKDKRVMSLDMGTVVAGTKYRGEFEERLKKV 264
Query: 375 ISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDE 434
+ EIQ++G+VILFIDE+HTL+G+G G +G +D SN+LKP+L RGELQCI +TT DE
Sbjct: 265 MEEIQQAGNVILFIDELHTLVGAG----GAEG-AIDASNILKPALARGELQCIGATTLDE 319
Query: 435 HRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494
+R EKD AL RRFQPV + EPS D V IL GLR++YEAHH + EAI AAV LS
Sbjct: 320 YRKNIEKDAALERRFQPVQVDEPSVVDTVAILKGLRDRYEAHHRINISDEAIEAAVKLSN 379
Query: 495 RYISDRYLPDKAIDLVDEAGSRAHIE 520
RY+SDR+LPDKAIDL+DEA S+ ++
Sbjct: 380 RYVSDRFLPDKAIDLIDEASSKVRLK 405
>sp|Q99W78|CLPC_STAAM ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain Mu50 / ATCC 700699)
GN=clpC PE=1 SV=1
Length = 818
Score = 349 bits (896), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 206/446 (46%), Positives = 273/446 (61%), Gaps = 48/446 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGF----LES-GITID 135
+F R TERA + + +Q EA L + T+HLLLGL+ E P G LES IT D
Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKE---PEGIAAKVLESFNITED 58
Query: 136 KAREAVVS-IWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFI 194
K E V I H ++ T + ++ K+V E +++ +R +NF+
Sbjct: 59 KVIEEVEKLIGHGQDHVGT---------------LHYTPRAKKVIELSMDEARKLHHNFV 103
Query: 195 APEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENS 254
EHI LGL ++G A RV L D+N +++ + ++ K P ++ + S
Sbjct: 104 GTEHILLGLIRENEGVAARVFANL--DLN------ITKARAQVVKALGNPEMSNKNAQAS 155
Query: 255 ISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP 314
S T L S R DLT A + +DPVIGR+ EI R+I++L RRTKNNP
Sbjct: 156 KSNNTPTLDSLAR-----------DLTVIAKDGTLDPVIGRDKEITRVIEVLSRRTKNNP 204
Query: 315 ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTL 374
+L+GE GVGKTAIAEGLA IV EVP L KR+MSLDMG ++AG K RGE E R+ +
Sbjct: 205 VLIGEPGVGKTAIAEGLAQAIVNNEVPETLKDKRVMSLDMGTVVAGTKYRGEFEERLKKV 264
Query: 375 ISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDE 434
+ EIQ++G+VILFIDE+HTL+G+G G +G +D SN+LKP+L RGELQCI +TT DE
Sbjct: 265 MEEIQQAGNVILFIDELHTLVGAG----GAEG-AIDASNILKPALARGELQCIGATTLDE 319
Query: 435 HRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494
+R EKD AL RRFQPV + EPS D V IL GLR++YEAHH + EAI AAV LS
Sbjct: 320 YRKNIEKDAALERRFQPVQVDEPSVVDTVAILKGLRDRYEAHHRINISDEAIEAAVKLSN 379
Query: 495 RYISDRYLPDKAIDLVDEAGSRAHIE 520
RY+SDR+LPDKAIDL+DEA S+ ++
Sbjct: 380 RYVSDRFLPDKAIDLIDEASSKVRLK 405
>sp|P0C281|CLPC_STAAC ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain COL) GN=clpC PE=3 SV=1
Length = 818
Score = 349 bits (896), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 206/446 (46%), Positives = 273/446 (61%), Gaps = 48/446 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGF----LES-GITID 135
+F R TERA + + +Q EA L + T+HLLLGL+ E P G LES IT D
Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKE---PEGIAAKVLESFNITED 58
Query: 136 KAREAVVS-IWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFI 194
K E V I H ++ T + ++ K+V E +++ +R +NF+
Sbjct: 59 KVIEEVEKLIGHGQDHVGT---------------LHYTPRAKKVIELSMDEARKLHHNFV 103
Query: 195 APEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENS 254
EHI LGL ++G A RV L D+N +++ + ++ K P ++ + S
Sbjct: 104 GTEHILLGLIRENEGVAARVFANL--DLN------ITKARAQVVKALGNPEMSNKNAQAS 155
Query: 255 ISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP 314
S T L S R DLT A + +DPVIGR+ EI R+I++L RRTKNNP
Sbjct: 156 KSNNTPTLDSLAR-----------DLTVIAKDGTLDPVIGRDKEITRVIEVLSRRTKNNP 204
Query: 315 ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTL 374
+L+GE GVGKTAIAEGLA IV EVP L KR+MSLDMG ++AG K RGE E R+ +
Sbjct: 205 VLIGEPGVGKTAIAEGLAQAIVNNEVPETLKDKRVMSLDMGTVVAGTKYRGEFEERLKKV 264
Query: 375 ISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDE 434
+ EIQ++G+VILFIDE+HTL+G+G G +G +D SN+LKP+L RGELQCI +TT DE
Sbjct: 265 MEEIQQAGNVILFIDELHTLVGAG----GAEG-AIDASNILKPALARGELQCIGATTLDE 319
Query: 435 HRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494
+R EKD AL RRFQPV + EPS D V IL GLR++YEAHH + EAI AAV LS
Sbjct: 320 YRKNIEKDAALERRFQPVQVDEPSVVDTVAILKGLRDRYEAHHRINISDEAIEAAVKLSN 379
Query: 495 RYISDRYLPDKAIDLVDEAGSRAHIE 520
RY+SDR+LPDKAIDL+DEA S+ ++
Sbjct: 380 RYVSDRFLPDKAIDLIDEASSKVRLK 405
>sp|Q2YSD6|CLPC_STAAB ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain bovine RF122 / ET3-1)
GN=clpC PE=3 SV=1
Length = 818
Score = 349 bits (896), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 206/446 (46%), Positives = 273/446 (61%), Gaps = 48/446 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGF----LES-GITID 135
+F R TERA + + +Q EA L + T+HLLLGL+ E P G LES IT D
Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKE---PEGIAAKVLESFNITED 58
Query: 136 KAREAVVS-IWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFI 194
K E V I H ++ T + ++ K+V E +++ +R +NF+
Sbjct: 59 KVIEEVEKLIGHGQDHVGT---------------LHYTPRAKKVIELSMDEARKLHHNFV 103
Query: 195 APEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENS 254
EHI LGL ++G A RV L D+N +++ + ++ K P ++ + S
Sbjct: 104 GTEHILLGLIRENEGVAARVFANL--DLN------ITKARAQVVKALGNPEMSNKNAQAS 155
Query: 255 ISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP 314
S T L S R DLT A + +DPVIGR+ EI R+I++L RRTKNNP
Sbjct: 156 KSNNTPTLDSLAR-----------DLTVIAKDGTLDPVIGRDKEITRVIEVLSRRTKNNP 204
Query: 315 ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTL 374
+L+GE GVGKTAIAEGLA IV EVP L KR+MSLDMG ++AG K RGE E R+ +
Sbjct: 205 VLIGEPGVGKTAIAEGLAQAIVNNEVPETLKDKRVMSLDMGTVVAGTKYRGEFEERLKKV 264
Query: 375 ISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDE 434
+ EIQ++G+VILFIDE+HTL+G+G G +G +D SN+LKP+L RGELQCI +TT DE
Sbjct: 265 MEEIQQAGNVILFIDELHTLVGAG----GAEG-AIDASNILKPALARGELQCIGATTLDE 319
Query: 435 HRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494
+R EKD AL RRFQPV + EPS D V IL GLR++YEAHH + EAI AAV LS
Sbjct: 320 YRKNIEKDAALERRFQPVQVDEPSVVDTVAILKGLRDRYEAHHRINISDEAIEAAVKLSN 379
Query: 495 RYISDRYLPDKAIDLVDEAGSRAHIE 520
RY+SDR+LPDKAIDL+DEA S+ ++
Sbjct: 380 RYVSDRFLPDKAIDLIDEASSKVRLK 405
>sp|Q2G0P5|CLPC_STAA8 ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain NCTC 8325) GN=clpC PE=1
SV=1
Length = 818
Score = 349 bits (896), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 206/446 (46%), Positives = 273/446 (61%), Gaps = 48/446 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGF----LES-GITID 135
+F R TERA + + +Q EA L + T+HLLLGL+ E P G LES IT D
Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKE---PEGIAAKVLESFNITED 58
Query: 136 KAREAVVS-IWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFI 194
K E V I H ++ T + ++ K+V E +++ +R +NF+
Sbjct: 59 KVIEEVEKLIGHGQDHVGT---------------LHYTPRAKKVIELSMDEARKLHHNFV 103
Query: 195 APEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENS 254
EHI LGL ++G A RV L D+N +++ + ++ K P ++ + S
Sbjct: 104 GTEHILLGLIRENEGVAARVFANL--DLN------ITKARAQVVKALGNPEMSNKNAQAS 155
Query: 255 ISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP 314
S T L S R DLT A + +DPVIGR+ EI R+I++L RRTKNNP
Sbjct: 156 KSNNTPTLDSLAR-----------DLTVIAKDGTLDPVIGRDKEITRVIEVLSRRTKNNP 204
Query: 315 ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTL 374
+L+GE GVGKTAIAEGLA IV EVP L KR+MSLDMG ++AG K RGE E R+ +
Sbjct: 205 VLIGEPGVGKTAIAEGLAQAIVNNEVPETLKDKRVMSLDMGTVVAGTKYRGEFEERLKKV 264
Query: 375 ISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDE 434
+ EIQ++G+VILFIDE+HTL+G+G G +G +D SN+LKP+L RGELQCI +TT DE
Sbjct: 265 MEEIQQAGNVILFIDELHTLVGAG----GAEG-AIDASNILKPALARGELQCIGATTLDE 319
Query: 435 HRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494
+R EKD AL RRFQPV + EPS D V IL GLR++YEAHH + EAI AAV LS
Sbjct: 320 YRKNIEKDAALERRFQPVQVDEPSVVDTVAILKGLRDRYEAHHRINISDEAIEAAVKLSN 379
Query: 495 RYISDRYLPDKAIDLVDEAGSRAHIE 520
RY+SDR+LPDKAIDL+DEA S+ ++
Sbjct: 380 RYVSDRFLPDKAIDLIDEASSKVRLK 405
>sp|Q2FJB5|CLPC_STAA3 ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain USA300) GN=clpC PE=3
SV=1
Length = 818
Score = 349 bits (896), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 206/446 (46%), Positives = 273/446 (61%), Gaps = 48/446 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGF----LES-GITID 135
+F R TERA + + +Q EA L + T+HLLLGL+ E P G LES IT D
Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKE---PEGIAAKVLESFNITED 58
Query: 136 KAREAVVS-IWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFI 194
K E V I H ++ T + ++ K+V E +++ +R +NF+
Sbjct: 59 KVIEEVEKLIGHGQDHVGT---------------LHYTPRAKKVIELSMDEARKLHHNFV 103
Query: 195 APEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENS 254
EHI LGL ++G A RV L D+N +++ + ++ K P ++ + S
Sbjct: 104 GTEHILLGLIRENEGVAARVFANL--DLN------ITKARAQVVKALGNPEMSNKNAQAS 155
Query: 255 ISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP 314
S T L S R DLT A + +DPVIGR+ EI R+I++L RRTKNNP
Sbjct: 156 KSNNTPTLDSLAR-----------DLTVIAKDGTLDPVIGRDKEITRVIEVLSRRTKNNP 204
Query: 315 ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTL 374
+L+GE GVGKTAIAEGLA IV EVP L KR+MSLDMG ++AG K RGE E R+ +
Sbjct: 205 VLIGEPGVGKTAIAEGLAQAIVNNEVPETLKDKRVMSLDMGTVVAGTKYRGEFEERLKKV 264
Query: 375 ISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDE 434
+ EIQ++G+VILFIDE+HTL+G+G G +G +D SN+LKP+L RGELQCI +TT DE
Sbjct: 265 MEEIQQAGNVILFIDELHTLVGAG----GAEG-AIDASNILKPALARGELQCIGATTLDE 319
Query: 435 HRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494
+R EKD AL RRFQPV + EPS D V IL GLR++YEAHH + EAI AAV LS
Sbjct: 320 YRKNIEKDAALERRFQPVQVDEPSVVDTVAILKGLRDRYEAHHRINISDEAIEAAVKLSN 379
Query: 495 RYISDRYLPDKAIDLVDEAGSRAHIE 520
RY+SDR+LPDKAIDL+DEA S+ ++
Sbjct: 380 RYVSDRFLPDKAIDLIDEASSKVRLK 405
>sp|Q8NXY8|CLPC_STAAW ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain MW2) GN=clpC PE=3 SV=1
Length = 818
Score = 349 bits (895), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 206/446 (46%), Positives = 273/446 (61%), Gaps = 48/446 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGF----LES-GITID 135
+F R TERA + + +Q EA L + T+HLLLGL+ E P G LES IT D
Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKE---PEGIAAKVLESFNITED 58
Query: 136 KAREAVVS-IWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFI 194
K E V I H ++ T + ++ K+V E +++ +R +NF+
Sbjct: 59 KVIEEVEKLIGHGQDHVGT---------------LHYTPRAKKVIELSMDEARKLHHNFV 103
Query: 195 APEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENS 254
EHI LGL ++G A RV L D+N +++ + ++ K P ++ + S
Sbjct: 104 GTEHILLGLIRENEGVAARVFANL--DLN------ITKARAQVVKALGNPEMSNKNAQAS 155
Query: 255 ISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP 314
S T L S R DLT A + +DPVIGR+ EI R+I++L RRTKNNP
Sbjct: 156 KSNNTPTLDSLAR-----------DLTVIAKDGTLDPVIGRDKEITRVIEVLSRRTKNNP 204
Query: 315 ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTL 374
+L+GE GVGKTAIAEGLA IV EVP L KR+MSLDMG ++AG K RGE E R+ +
Sbjct: 205 VLIGEPGVGKTAIAEGLAQAIVNNEVPETLKDKRVMSLDMGTVVAGTKYRGEFEERLKKV 264
Query: 375 ISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDE 434
+ EIQ++G+VILFIDE+HTL+G+G G +G +D SN+LKP+L RGELQCI +TT DE
Sbjct: 265 MEEIQQAGNVILFIDELHTLVGAG----GAEG-AIDASNILKPALARGELQCIGATTLDE 319
Query: 435 HRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494
+R EKD AL RRFQPV + EPS D V IL GLR++YEAHH + EAI AAV LS
Sbjct: 320 YRKNIEKDAALERRFQPVQVDEPSVVDTVAILKGLRDRYEAHHRINISDEAIEAAVKLSN 379
Query: 495 RYISDRYLPDKAIDLVDEAGSRAHIE 520
RY+SDR+LPDKAIDL+DEA S+ ++
Sbjct: 380 RYVSDRFLPDKAIDLIDEASSKVRLK 405
>sp|Q7F9I1|CLPC1_ORYSJ Chaperone protein ClpC1, chloroplastic OS=Oryza sativa subsp.
japonica GN=CLPC1 PE=2 SV=2
Length = 918
Score = 345 bits (884), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 200/444 (45%), Positives = 279/444 (62%), Gaps = 37/444 (8%)
Query: 78 ISSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH-PNGFLES-GITID 135
+ ++FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S GI +
Sbjct: 84 VRAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLK 143
Query: 136 KAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIA 195
AR V I +G F A ++PF+ KRV E ++E +R G+N+I
Sbjct: 144 DARVEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIG 190
Query: 196 PEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSI 255
EH+ LGL +G A RVL+ LG D N++ V R+ GE ++
Sbjct: 191 SEHLLLGLLREGEGVAARVLESLGADPNNIRT-QVIRMVGE----------------STE 233
Query: 256 SGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPI 315
+ + LE++ +LT A E +DPV+GR+ +I+R+ QIL RRTKNNP
Sbjct: 234 AVGAGVGGGSSGQKMPTLEEYGTNLTKLAEEGKLDPVVGRQDQIERVTQILGRRTKNNPC 293
Query: 316 LLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLI 375
L+GE GVGKTAIAEGLA RI +VP + K++++LDMGLL+AG K RGE E R+ L+
Sbjct: 294 LIGEPGVGKTAIAEGLAQRISNGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLM 353
Query: 376 SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEH 435
EI+++ D+ILFIDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+
Sbjct: 354 EEIKQNDDIILFIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEY 408
Query: 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495
R EKD AL RRFQPV + EP+ ++ ++IL GLRE+YE HH ++T +++ AA LS +
Sbjct: 409 RKHIEKDPALERRFQPVKVPEPTVDETIQILRGLRERYELHHKLRYTDDSLIAAAQLSYQ 468
Query: 496 YISDRYLPDKAIDLVDEAGSRAHI 519
YISDR+LPDKAIDL+DEAGSR +
Sbjct: 469 YISDRFLPDKAIDLIDEAGSRVRL 492
>sp|P46523|CLPA_BRANA ATP-dependent Clp protease ATP-binding subunit clpA homolog,
chloroplastic (Fragment) OS=Brassica napus GN=CLPA PE=2
SV=1
Length = 874
Score = 343 bits (880), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 207/481 (43%), Positives = 291/481 (60%), Gaps = 47/481 (9%)
Query: 78 ISSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH-PNGFLES-GITID 135
+ ++FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S GI +
Sbjct: 38 VKAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLK 97
Query: 136 KAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIA 195
AR V I +G F A ++PF+ KRV E ++E +R G+N+I
Sbjct: 98 DARVEVEKII------------GRGSGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIG 144
Query: 196 PEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSI 255
EH+ LGL +G A RVL+ LG D +++ V R+ GE N +
Sbjct: 145 SEHLLLGLLREGEGVAARVLENLGADPSNIRT-QVIRMVGE---------------NNEV 188
Query: 256 SGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPI 315
+ G + LE++ +LT A E +DPV+GR +I+R++QIL RRTKNNP
Sbjct: 189 TANVGG--GSGTNKMPTLEEYGTNLTKLAEEGKLDPVVGRHPQIERVVQILGRRTKNNPC 246
Query: 316 LLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLI 375
L+GE GVGKTAIAEGLA RI V K++++LDMGLL AG K RGE E RV L+
Sbjct: 247 LIGEPGVGKTAIAEGLAQRIASGVVRETSEGKKVITLDMGLLAAGTKYRGEFEERVKKLM 306
Query: 376 SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEH 435
EI++S ++ILFIDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+
Sbjct: 307 EEIKQSDEIILFIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEY 361
Query: 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495
R EKD AL RRFQPV + EP+ ++ ++IL GLRE+YE HH ++T E++ AA LS +
Sbjct: 362 RKHIEKDPALERRFQPVKVPEPTVDETIQILKGLRERYEIHHKLRYTDESLVAAAQLSYQ 421
Query: 496 YISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQ 555
YISDR+LPD+AIDL+DEAGSR + + +E + + +E+R + +E V+
Sbjct: 422 YISDRFLPDRAIDLMDEAGSRVRLRHAQVPEEAR---------ELEKELRQITKENEAVR 472
Query: 556 G 556
G
Sbjct: 473 G 473
>sp|Q2QVG9|CLPC2_ORYSJ Chaperone protein ClpC2, chloroplastic OS=Oryza sativa subsp.
japonica GN=CLPC2 PE=2 SV=2
Length = 919
Score = 343 bits (879), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 200/442 (45%), Positives = 277/442 (62%), Gaps = 37/442 (8%)
Query: 80 SVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH-PNGFLES-GITIDKA 137
S+FERFTE+A+K ++ +Q EA+ LG + V T+ +LLGLI E L+S GI + A
Sbjct: 87 SMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDA 146
Query: 138 REAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPE 197
R V I +G F A ++PF+ KRV E ++E +R G+N+I E
Sbjct: 147 RVEVEKII------------GRGNGFV-AVEIPFTPRAKRVLELSLEEARQLGHNYIGSE 193
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISG 257
H+ LGL +G A RVL+ LG D +++ V R+ GE + +
Sbjct: 194 HLLLGLLREGEGVAARVLESLGADPSNIRT-QVIRMIGETTE----------------AV 236
Query: 258 KTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
+ LE++ +LT A E +DPV+GR+ +I+R++QIL RRTKNNP L+
Sbjct: 237 GAGVGGGSSGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLI 296
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGKTAIAEGLA RI +VP + K++++LDMGLL+AG K RGE E R+ L+ E
Sbjct: 297 GEPGVGKTAIAEGLAQRISTGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEE 356
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
I++S ++ILFIDEVHTLIG+G +D +N+LKP+L RGELQCI +TT DE+R
Sbjct: 357 IKQSDEIILFIDEVHTLIGAGAA-----EGAIDAANILKPALARGELQCIGATTLDEYRK 411
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
EKD AL RRFQPV + EP+ ++ + IL GLRE+YE HH ++T +A+ +A LS +YI
Sbjct: 412 HIEKDPALERRFQPVRVPEPTVDETIEILRGLRERYEIHHKLRYTDDALISAAKLSYQYI 471
Query: 498 SDRYLPDKAIDLVDEAGSRAHI 519
SDR+LPDKAIDL+DEAGSR +
Sbjct: 472 SDRFLPDKAIDLIDEAGSRVRL 493
>sp|Q8CQ88|CLPC_STAES ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus epidermidis (strain ATCC 12228)
GN=clpC PE=3 SV=1
Length = 817
Score = 340 bits (873), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 195/446 (43%), Positives = 268/446 (60%), Gaps = 48/446 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-----FLESGITID 135
+F R TERA + + +Q EA L + T+HLLLGL+ E P G + IT D
Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKE---PEGIAAKVLVSFNITED 58
Query: 136 KAREAVVS-IWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFI 194
K E V I H T + ++ K+V E +++ +R +NF+
Sbjct: 59 KVIEEVEKLIGHGQEQMGT---------------LHYTPRAKKVIELSMDEARKLHHNFV 103
Query: 195 APEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENS 254
EHI LGL ++G A RV L D+N +++ + ++ K P ++ + +
Sbjct: 104 GTEHILLGLIRENEGVAARVFANL--DLN------ITKARAQVVKALGSPEMSNKNAQAN 155
Query: 255 ISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP 314
S T L R DLT A + +DPV+GR+ EI R+I++L RRTKNNP
Sbjct: 156 KSNNTPTLDGLAR-----------DLTVIAKDGTLDPVVGRDKEITRVIEVLSRRTKNNP 204
Query: 315 ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTL 374
+L+GE GVGKTAIAEGLA IV+ EVP L KR+MSLDMG ++AG K RGE E R+ +
Sbjct: 205 VLIGEPGVGKTAIAEGLAQAIVKNEVPETLKDKRVMSLDMGTVVAGTKYRGEFEERLKKV 264
Query: 375 ISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDE 434
+ EI ++G+VILFIDE+HTL+G+G G +G +D SN+LKP+L RGELQCI +TT DE
Sbjct: 265 MEEIHQAGNVILFIDELHTLVGAG----GAEG-AIDASNILKPALARGELQCIGATTLDE 319
Query: 435 HRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494
+R EKD AL RRFQP+ + EP+ ED + IL GLR++YEAHH + EA+ AA LS
Sbjct: 320 YRKNIEKDAALERRFQPIQVDEPTVEDTIEILKGLRDRYEAHHRINISDEALEAAAKLSD 379
Query: 495 RYISDRYLPDKAIDLVDEAGSRAHIE 520
RY+SDR+LPDKAIDL+DEA S+ ++
Sbjct: 380 RYVSDRFLPDKAIDLIDEASSKVRLK 405
>sp|Q5HRM8|CLPC_STAEQ ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus epidermidis (strain ATCC 35984 /
RP62A) GN=clpC PE=3 SV=1
Length = 817
Score = 340 bits (873), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 195/446 (43%), Positives = 268/446 (60%), Gaps = 48/446 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-----FLESGITID 135
+F R TERA + + +Q EA L + T+HLLLGL+ E P G + IT D
Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKE---PEGIAAKVLVSFNITED 58
Query: 136 KAREAVVS-IWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFI 194
K E V I H T + ++ K+V E +++ +R +NF+
Sbjct: 59 KVIEEVEKLIGHGQEQMGT---------------LHYTPRAKKVIELSMDEARKLHHNFV 103
Query: 195 APEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENS 254
EHI LGL ++G A RV L D+N +++ + ++ K P ++ + +
Sbjct: 104 GTEHILLGLIRENEGVAARVFANL--DLN------ITKARAQVVKALGSPEMSNKNAQAN 155
Query: 255 ISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP 314
S T L R DLT A + +DPV+GR+ EI R+I++L RRTKNNP
Sbjct: 156 KSNNTPTLDGLAR-----------DLTVIAKDGTLDPVVGRDKEITRVIEVLSRRTKNNP 204
Query: 315 ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTL 374
+L+GE GVGKTAIAEGLA IV+ EVP L KR+MSLDMG ++AG K RGE E R+ +
Sbjct: 205 VLIGEPGVGKTAIAEGLAQAIVKNEVPETLKDKRVMSLDMGTVVAGTKYRGEFEERLKKV 264
Query: 375 ISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDE 434
+ EI ++G+VILFIDE+HTL+G+G G +G +D SN+LKP+L RGELQCI +TT DE
Sbjct: 265 MEEIHQAGNVILFIDELHTLVGAG----GAEG-AIDASNILKPALARGELQCIGATTLDE 319
Query: 435 HRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494
+R EKD AL RRFQP+ + EP+ ED + IL GLR++YEAHH + EA+ AA LS
Sbjct: 320 YRKNIEKDAALERRFQPIQVDEPTVEDTIEILKGLRDRYEAHHRINISDEALEAAAKLSD 379
Query: 495 RYISDRYLPDKAIDLVDEAGSRAHIE 520
RY+SDR+LPDKAIDL+DEA S+ ++
Sbjct: 380 RYVSDRFLPDKAIDLIDEASSKVRLK 405
>sp|P24428|CLPC_MYCLE Probable ATP-dependent Clp protease ATP-binding subunit
OS=Mycobacterium leprae (strain TN) GN=clpC PE=3 SV=2
Length = 848
Score = 340 bits (872), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 189/441 (42%), Positives = 265/441 (60%), Gaps = 31/441 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKSLDSLGISLEAVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V +D QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 SQV------------EDIIGQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG ++ + + L G KE E E+
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGAELTRVRQQVIQLLSGYQGKEAAEAGTGGRGGESGSPST 167
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L +QF +LTA A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 168 SLVL-----------DQFGRNLTAAAMESKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 216
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV EVP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 217 EPGVGKTAVVEGLAQAIVHGEVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 276
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 277 NTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPKLARGELQTIGATTLDEYRKY 331
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EP+ E + IL GLR++YEAHH T A+ AA L+ RYI+
Sbjct: 332 IEKDAALERRFQPVQVGEPTVEHTIEILKGLRDRYEAHHRVSITDSAMVAAATLADRYIN 391
Query: 499 DRYLPDKAIDLVDEAGSRAHI 519
DR+LPDKAIDL+DEAG+R I
Sbjct: 392 DRFLPDKAIDLIDEAGARMRI 412
>sp|Q4L3I4|CLPC_STAHJ ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus haemolyticus (strain JCSC1435) GN=clpC
PE=3 SV=1
Length = 824
Score = 338 bits (866), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 195/445 (43%), Positives = 263/445 (59%), Gaps = 46/445 (10%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGF----LES-GITID 135
+F R TERA + + +Q EA L + T+HLLLGL+ E P G LES IT D
Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKE---PEGIAAKVLESFNITED 58
Query: 136 KAREAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIA 195
K E V + +Q + ++ K+V E +++ +R +NF+
Sbjct: 59 KVIEEVEKLIGHGQDQ--------------TGTLHYTPRAKKVIELSMDEARKLHHNFVG 104
Query: 196 PEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSI 255
EHI LGL ++G A RV L +++ A V K + +
Sbjct: 105 TEHILLGLIRENEGVAARVFANLDLNITKARAQVV-----------------KALGSPEM 147
Query: 256 SGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPI 315
S K A T L+ DLT A + +DPV+GR+ EI R+I++L RRTKNNP+
Sbjct: 148 SNKNATANKSNNT--PTLDGLARDLTVIAKDGTLDPVVGRDKEITRVIEVLSRRTKNNPV 205
Query: 316 LLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLI 375
L+GE GVGKTAIAEGLA IV EVP L KR+MSLDMG ++AG K RGE E R+ ++
Sbjct: 206 LIGEPGVGKTAIAEGLAQAIVNNEVPETLKGKRVMSLDMGTVVAGTKYRGEFEERLKKVM 265
Query: 376 SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEH 435
EI ++G+VILFIDE+HTL+G+G G +G +D SN+LKP+L RGELQCI +TT DE+
Sbjct: 266 EEIHQAGNVILFIDELHTLVGAG----GAEG-AIDASNILKPALARGELQCIGATTLDEY 320
Query: 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495
R EKD AL RRFQP+ + EP+ ED + IL GLR++YEAHH + EA+ AA LS
Sbjct: 321 RKNIEKDAALERRFQPIQVDEPTVEDTIAILKGLRDRYEAHHRINISDEALEAAAKLSDC 380
Query: 496 YISDRYLPDKAIDLVDEAGSRAHIE 520
Y+SDR+LPDKAIDL+DEA S+ ++
Sbjct: 381 YVSDRFLPDKAIDLIDEASSKVRLK 405
>sp|Q49V34|CLPC_STAS1 ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus saprophyticus subsp. saprophyticus
(strain ATCC 15305 / DSM 20229) GN=clpC PE=3 SV=1
Length = 820
Score = 336 bits (861), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 190/440 (43%), Positives = 265/440 (60%), Gaps = 36/440 (8%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREA 140
+F R TERA + + +Q EA L + T+HLLLGL+ E P G A +
Sbjct: 2 LFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKE---PEGI---------AAKV 49
Query: 141 VVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIA 200
+ + + + G + ++ K+V E +++ +R +NF+ EHI
Sbjct: 50 LETFEITEEKVVEEVEKLIGHGQEQMGALHYTPRAKKVIELSMDEARKLHHNFVGTEHIL 109
Query: 201 LGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTA 260
LGL ++G A RV L D+N +++ + ++ K P ++ + + S T
Sbjct: 110 LGLIRENEGVAARVFANL--DLN------ITKARAQVVKALGSPEMSNKNAQANKSNNTP 161
Query: 261 ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGES 320
L S R DLT A + +DPVIGR+ EI R+I++L RRTKNNP+L+GE
Sbjct: 162 TLDSLAR-----------DLTVIAKDGTLDPVIGRDKEITRVIEVLSRRTKNNPVLIGEP 210
Query: 321 GVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380
GVGKTAIAEGLA IV EVP L KR+MSLDMG ++AG K RGE E R+ ++ EI +
Sbjct: 211 GVGKTAIAEGLAQAIVNNEVPETLKGKRVMSLDMGTVVAGTKYRGEFEERLKKVMEEIHQ 270
Query: 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
+G+VILFIDE+HTL+G+G G +G +D SN+LKP+L RGELQCI +TT DE+R E
Sbjct: 271 AGNVILFIDELHTLVGAG----GAEG-AIDASNILKPALARGELQCIGATTLDEYRKNIE 325
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD AL RRFQPV + EP+ ED + IL GLR++YEAHH + EA+ +A LS RY+SDR
Sbjct: 326 KDAALERRFQPVQVDEPTVEDTIEILKGLRDRYEAHHRINISDEALVSAAKLSHRYVSDR 385
Query: 501 YLPDKAIDLVDEAGSRAHIE 520
+LPDKAIDL+DEA S+ ++
Sbjct: 386 FLPDKAIDLIDEASSKVRLK 405
>sp|Q54316|HLYB_TREHY Hemolysin B OS=Treponema hyodysenteriae GN=tlyB PE=3 SV=1
Length = 828
Score = 334 bits (857), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 192/466 (41%), Positives = 280/466 (60%), Gaps = 35/466 (7%)
Query: 85 FTERAVKAV-IFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAVVS 143
T +A K + +++Q EAK L DMV +H+LLGL+ E + + ID R +
Sbjct: 6 LTSKAKKVIELYAQEEAKRLNHDMVTPEHILLGLLYESEALATRVLMRLKIDLDRLKL-- 63
Query: 144 IWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGL 203
+ + A + +P + +++ + E +R+ +N+I EH+ LGL
Sbjct: 64 --------ELESAMVKSSTTKVFGTLPTAPRVQKLISRSAEEARALSHNYIGTEHLLLGL 115
Query: 204 FTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISG--KTAA 261
+ G+A VL +G+++ L + L GV ++IS +T+
Sbjct: 116 LREESGTAYNVLTSMGLELTILRQEILKML---------------GVAGSNISSMEQTSQ 160
Query: 262 LKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESG 321
+ + + L+QF DLT A ++ +D VIGRE E+ R++QIL RR KNNPILLGE G
Sbjct: 161 EDNVKKVKTPTLDQFARDLTKMARDKALDRVIGRENEVMRVVQILSRRKKNNPILLGEPG 220
Query: 322 VGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKS 381
VGKTAI EGLA +IV A+VP LL KR+++LD+ ++AG K RGE E R+ ++ EI+K+
Sbjct: 221 VGKTAIVEGLAEKIVAADVPDILLKKRVLTLDLSSVVAGTKYRGEFEERIKNIVLEIKKA 280
Query: 382 GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEK 441
++I+FIDE+HTLIG+G G +G LD +N+LKP+L RGE+QCI +TT +E++ EK
Sbjct: 281 SNIIIFIDELHTLIGAG----GAEG-ALDAANMLKPALSRGEIQCIGATTINEYKKYIEK 335
Query: 442 DKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRY 501
D AL RRFQP+ + EPS ED + IL G++ KYE HH K+T EAINAA LS RYI +R+
Sbjct: 336 DGALVRRFQPINVEEPSIEDTIEILNGIKGKYEEHHKVKYTDEAINAAAVLSKRYIFERH 395
Query: 502 LPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTV 547
LPDKAIDL+DEAGSRA L + Q+ L K ++ Q+ + V
Sbjct: 396 LPDKAIDLIDEAGSRAR--LLNMTRPQEFKDLEKKIEELNQQKKRV 439
>sp|Q53LY0|CLPC3_ORYSJ Chaperone protein ClpC3, chloroplastic OS=Oryza sativa subsp.
japonica GN=CLPC3 PE=2 SV=1
Length = 932
Score = 331 bits (848), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 185/434 (42%), Positives = 273/434 (62%), Gaps = 31/434 (7%)
Query: 82 FERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAV 141
F+ FT++A+KA++ +Q EA+ LG ++ LLLG+I E +GI R A
Sbjct: 99 FDMFTDKAIKAIMMAQEEARRLGHHAAGSEQLLLGVIGEG--------TGIGAKVLRGAG 150
Query: 142 VSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIAL 201
+S+ + + + A +G P ++ F+ + K V +A+ E + G+N++ EH+ L
Sbjct: 151 LSLKAA--RAEVEKMAGRG-PGMVPMEIKFTPAAKNVLQASQEEAHQLGHNYVGSEHLLL 207
Query: 202 GLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTAA 261
GL + G+A VLK D +++ + + + E +P A ++ G ++
Sbjct: 208 GLLR-EHGAALVVLKNFQADPSNIRSEVIRMISD--TSEDHQPVSA------AVGGGSST 258
Query: 262 LKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESG 321
K P L ++ +LT A E +DPV+GR+ ++ R++QIL RRTKNNP L+GE G
Sbjct: 259 TKIP------TLLEYGTNLTKLAEEGKLDPVVGRQNQVDRVVQILGRRTKNNPCLIGEPG 312
Query: 322 VGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKS 381
VGKTAIAEGLA RI VP + K +++LDMGLL+AG K RGE E R+ L+ E++++
Sbjct: 313 VGKTAIAEGLAQRIAAGNVPETIDGKTVITLDMGLLVAGTKYRGEFEERLKKLMDEVKQN 372
Query: 382 GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEK 441
G++ILF+DEVHTL+G+G +G +D +N+LKP+L RGELQCI +TT DE+R EK
Sbjct: 373 GEIILFLDEVHTLVGAGAA----EGA-IDAANILKPALARGELQCIGATTIDEYRKHIEK 427
Query: 442 DKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRY 501
D AL RRFQPV + EP+ ++ + IL GLRE+YE HH ++T E++ AA LS +YISDR+
Sbjct: 428 DPALERRFQPVKVPEPTVDETIGILKGLRERYEIHHKVQYTDESLIAAARLSYQYISDRF 487
Query: 502 LPDKAIDLVDEAGS 515
LPDKAIDLVDEAGS
Sbjct: 488 LPDKAIDLVDEAGS 501
>sp|P0A522|CLPC_MYCTU Probable ATP-dependent Clp protease ATP-binding subunit
OS=Mycobacterium tuberculosis GN=clpC PE=1 SV=1
Length = 848
Score = 330 bits (845), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 192/441 (43%), Positives = 267/441 (60%), Gaps = 31/441 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKSLESLGISLEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 SQVEEI------------IGQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG ++ + + L G KE E E+
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGAELTRVRQQVIQLLSGYQGKEAAEAGTGGRGGESGSPST 167
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L +QF +LTA A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 168 SLVL-----------DQFGRNLTAAAMEGKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 216
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV EVP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 217 EPGVGKTAVVEGLAQAIVHGEVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 276
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 277 NTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPKLARGELQTIGATTLDEYRKY 331
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EP+ E + IL GLR++YEAHH T A+ AA L+ RYI+
Sbjct: 332 IEKDAALERRFQPVQVGEPTVEHTIEILKGLRDRYEAHHRVSITDAAMVAAATLADRYIN 391
Query: 499 DRYLPDKAIDLVDEAGSRAHI 519
DR+LPDKAIDL+DEAG+R I
Sbjct: 392 DRFLPDKAIDLIDEAGARMRI 412
>sp|P0A523|CLPC_MYCBO Probable ATP-dependent Clp protease ATP-binding subunit
OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
GN=clpC PE=3 SV=1
Length = 848
Score = 330 bits (845), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 192/441 (43%), Positives = 267/441 (60%), Gaps = 31/441 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-FLES-GITIDKAR 138
+FERFT+RA + V+ +Q EA+ L + + T+H+LLGLI E LES GI+++ R
Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKSLESLGISLEGVR 60
Query: 139 EAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEH 198
V I QG+ + + +PF+ K+V E ++ + G+N+I EH
Sbjct: 61 SQVEEI------------IGQGQQ-APSGHIPFTPRAKKVLELSLREALQLGHNYIGTEH 107
Query: 199 IALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGK 258
I LGL +G A +VL +LG ++ + + L G KE E E+
Sbjct: 108 ILLGLIREGEGVAAQVLVKLGAELTRVRQQVIQLLSGYQGKEAAEAGTGGRGGESGSPST 167
Query: 259 TAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318
+ L +QF +LTA A E +DPVIGRE EI+R++Q+L RRTKNNP+L+G
Sbjct: 168 SLVL-----------DQFGRNLTAAAMEGKLDPVIGREKEIERVMQVLSRRTKNNPVLIG 216
Query: 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI 378
E GVGKTA+ EGLA IV EVP L K++ +LD+G L+AG++ RG+ E R+ ++ EI
Sbjct: 217 EPGVGKTAVVEGLAQAIVHGEVPETLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEI 276
Query: 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438
GD+ILFIDE+HTL+G+G +D +++LKP L RGELQ I +TT DE+R
Sbjct: 277 NTRGDIILFIDELHTLVGAGAA-----EGAIDAASILKPKLARGELQTIGATTLDEYRKY 331
Query: 439 FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498
EKD AL RRFQPV + EP+ E + IL GLR++YEAHH T A+ AA L+ RYI+
Sbjct: 332 IEKDAALERRFQPVQVGEPTVEHTIEILKGLRDRYEAHHRVSITDAAMVAAATLADRYIN 391
Query: 499 DRYLPDKAIDLVDEAGSRAHI 519
DR+LPDKAIDL+DEAG+R I
Sbjct: 392 DRFLPDKAIDLIDEAGARMRI 412
>sp|P49574|CLPC_ODOSI ATP-dependent Clp protease ATP-binding subunit clpA homolog
OS=Odontella sinensis GN=clpC PE=3 SV=1
Length = 885
Score = 318 bits (815), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 176/443 (39%), Positives = 267/443 (60%), Gaps = 31/443 (6%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG---FLESGITIDKA 137
+FE+FTE A+K ++ SQ EA+ +G + V T+ LLLG+I + RH G + +T+ KA
Sbjct: 1 MFEKFTEGAIKVIMLSQEEARRMGHNFVGTEQLLLGIIGQ-RHGIGARALKKQKVTLKKA 59
Query: 138 REAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPE 197
R ++ + +G F A+++PF+ KRV E AV + G NF+ E
Sbjct: 60 R------------REIELYIGRGTGFV-ASEIPFTPRAKRVLEMAVHEGKDLGQNFVGTE 106
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISG 257
HI L L + DG A R L +LGV++ L + + ++ E +E L R + +
Sbjct: 107 HILLALISESDGVAMRTLDKLGVNIPKLRNLILMYIE-----ENQEEIL----RPLTQAE 157
Query: 258 KTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
K + + L+++ +++ A + +DPVIGR+ EI +I++L RR KNNP+L+
Sbjct: 158 KFLLEREKKGSSTPTLDEYSENISKEAVDGKLDPVIGRDKEIHEVIKVLARRRKNNPVLI 217
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGKTA+AEGLA I+ + P FL +M+LD+G ++AG K RGE E R+ ++ E
Sbjct: 218 GEPGVGKTAVAEGLAQLIIAEKAPDFLDGNLLMALDLGSILAGTKYRGEFEERIKRIVEE 277
Query: 378 IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRT 437
+Q +IL IDE+HTL+G+G +D +N+LKP+L RG+ +CI +TT DE+R
Sbjct: 278 VQNDSAIILVIDEIHTLVGAGAA-----EGAVDAANILKPALARGKFRCIGATTIDEYRK 332
Query: 438 QFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497
E+D AL RRFQPV + EP+ + ILLGLR K+E HH + +A+ A L+ ++I
Sbjct: 333 YIERDPALERRFQPVHVKEPTVGVTIEILLGLRSKFEEHHTLSYHDKAVEQAAILADKFI 392
Query: 498 SDRYLPDKAIDLVDEAGSRAHIE 520
+DR+LPDKAID++DEAGSR +E
Sbjct: 393 ADRFLPDKAIDVLDEAGSRVRLE 415
>sp|Q7V8B1|CLPB_PROMM Chaperone protein ClpB OS=Prochlorococcus marinus (strain MIT 9313)
GN=clpB PE=3 SV=1
Length = 865
Score = 311 bits (798), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 186/452 (41%), Positives = 272/452 (60%), Gaps = 52/452 (11%)
Query: 83 ERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLE-SGITIDKAREAV 141
++FTE+ A++ +Q+ A+ + T+HLLL L+ ++ LE +G++I + AV
Sbjct: 6 DQFTEKGWAAIVLAQQLAQQRKHQQLETEHLLLSLLQQNALAGRILEKAGVSIGNLQTAV 65
Query: 142 VSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKR----VFEAAVEYSRSRGYNFIAPE 197
+A Q +P AA P S+ + + + A ++ ++ G +FI+ E
Sbjct: 66 -------------EAHLQEQPTMQAA--PDSVYLGKGVNDLLDQAEKHKQAFGDSFISIE 110
Query: 198 HIALGLFTVDDGSAGR-VLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSIS 256
H+ L L D GR +L + GVD L VA+ ++G + P +G E
Sbjct: 111 HLLLAL--AGDNRCGRKLLNQAGVDAGKLK-VAIDAVRGNQKVTDQNP---EGTYE---- 160
Query: 257 GKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPIL 316
+LE++ DL+A A E +DPVIGR+ EI+R IQIL RRTKNNP+L
Sbjct: 161 ---------------SLEKYGRDLSAAAREGKLDPVIGRDDEIRRTIQILSRRTKNNPVL 205
Query: 317 LGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLIS 376
+GE GVGKTAI EGLA RIV +VP L ++++++LDMG L+AGAK RGE E R+ ++
Sbjct: 206 IGEPGVGKTAIVEGLAQRIVNGDVPAALQNRQLITLDMGALIAGAKYRGEFEERLKAVLK 265
Query: 377 EIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEH 435
E+ S G ++LFIDE+HT++G+G G +D SNLLKP L RGEL+CI +TT DEH
Sbjct: 266 EVTASEGQIVLFIDEIHTVVGAGATG-----GAMDASNLLKPMLARGELRCIGATTLDEH 320
Query: 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495
R EKD AL RRFQ VL+ +P+ +D + IL GL+E+YE HH + A+ AA LS+R
Sbjct: 321 RQHIEKDPALERRFQQVLVDQPTVQDTISILRGLKERYEVHHGVRIADNALVAAAVLSSR 380
Query: 496 YISDRYLPDKAIDLVDEAGSRAHIELFKRKKE 527
YI+DR+LPDKAIDL+DE+ +R +E+ + +E
Sbjct: 381 YIADRFLPDKAIDLMDESAARLKMEITSKPEE 412
>sp|Q89UL2|CLPB_BRAJA Chaperone protein ClpB OS=Bradyrhizobium japonicum (strain USDA
110) GN=clpB PE=3 SV=1
Length = 879
Score = 308 bits (790), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 189/448 (42%), Positives = 263/448 (58%), Gaps = 39/448 (8%)
Query: 82 FERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAV 141
E++TER+ + +Q A G T H+L L+ + N L +G+ ID+A
Sbjct: 3 IEKYTERSRGFIQSAQSLAVREGHQQFSTLHVLKVLLDD----NEGLAAGL-IDRAGGNS 57
Query: 142 VSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIAL 201
+I +T + G A ++ + R F+AA + G +F+ E + L
Sbjct: 58 RAILKATEDALNKVPKVSG---GGAGQIYLAPELARTFDAAEKAGEKAGDSFVTVERLLL 114
Query: 202 GLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTAA 261
GL AG +L + GV +L A +L KG +S + + A
Sbjct: 115 GLTLEKTSEAGTILSKGGVTPQNLNAAI--------------EALRKGRTADSATAENAY 160
Query: 262 LKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESG 321
AL+++ DLT A + +DPVIGR+ EI+R IQ+L RRTKNNP+L+GE G
Sbjct: 161 ---------DALKKYARDLTQAARDGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPG 211
Query: 322 VGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKS 381
VGKTAIAEGLA+RIV +VP L K+++SLD+G L+AGAK RGE E R+ ++ E+ S
Sbjct: 212 VGKTAIAEGLALRIVNGDVPESLKDKKLLSLDLGALIAGAKYRGEFEERLKAVLQEVTGS 271
Query: 382 -GDVILFIDEVHTLIGSGTVGRGNKGTG-LDISNLLKPSLGRGELQCIASTTQDEHRTQF 439
G ILFIDE+HTLIG+G KG G +D SNLLKP+L RGEL CI +TT DE++
Sbjct: 272 EGTFILFIDEMHTLIGAG------KGDGAMDASNLLKPALARGELHCIGATTLDEYQKHV 325
Query: 440 EKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499
EKD ALARRFQP+ +SEPS ED + IL GL++KYE HH + T A+ A+ LS RYI+D
Sbjct: 326 EKDAALARRFQPIFVSEPSVEDTISILRGLKDKYEQHHGVRITDSALVASATLSNRYITD 385
Query: 500 RYLPDKAIDLVDEAGSRAHIELFKRKKE 527
R+LPDKAIDL+DEA +R +++ + +E
Sbjct: 386 RFLPDKAIDLMDEAAARLKMQVDSKPEE 413
>sp|Q7U637|CLPB1_SYNPX Chaperone protein ClpB 1 OS=Synechococcus sp. (strain WH8102)
GN=clpB1 PE=3 SV=2
Length = 862
Score = 306 bits (783), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 186/452 (41%), Positives = 268/452 (59%), Gaps = 52/452 (11%)
Query: 83 ERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAVV 142
E+FTE+A A++ +Q+ A++ + T+HLLL L+ + NG +G + K V
Sbjct: 6 EQFTEQAWAAIVAAQQLAQASRHQQLETEHLLLALLRQ----NGL--AGRILSKTGVDVT 59
Query: 143 SIWHSTNNQDTDDAAAQG--KPFSSAAKMPFSISTKRVFEAAVEYSRSR----GYNFIAP 196
+ +A+ +G + S P S+ R A++ + R G +FIA
Sbjct: 60 TF----------EASVEGHLQRLPSLGSAPDSVFLGRSLNKALDRAEQRRDGFGDSFIAI 109
Query: 197 EHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSIS 256
EH+ L L DD ++L + GV N L A++ ++G
Sbjct: 110 EHLLLALAE-DDRCGRQLLSQAGVTTNTLKE-AITAVRG--------------------- 146
Query: 257 GKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPIL 316
+T ++P T S L ++ DLTA A + +DPVIGR+ EI+R IQIL RRTKNNP+L
Sbjct: 147 NQTVTDQNPEATYES-LAKYGRDLTAAARDGQLDPVIGRDEEIRRTIQILSRRTKNNPVL 205
Query: 317 LGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLIS 376
+GE GVGKTAI EGLA RIV +VP L ++++++LDMG L+AGAK RGE E R+ ++
Sbjct: 206 IGEPGVGKTAIVEGLAQRIVNGDVPQALQNRQLITLDMGALIAGAKYRGEFEERLKAVLK 265
Query: 377 EIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEH 435
E+ S G ++LFIDE+HT++G+G G +D SNLLKP L RGEL+CI +TT DEH
Sbjct: 266 EVTTSDGQIVLFIDEIHTVVGAGA-----SGGAMDASNLLKPMLARGELRCIGATTLDEH 320
Query: 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495
R EKD AL RRFQ VL+ +P+ D + IL GL+E+YE HH + A+ AA LS+R
Sbjct: 321 RQHIEKDPALERRFQQVLVDQPTVPDTISILRGLKERYEVHHGVRIADSALVAAAMLSSR 380
Query: 496 YISDRYLPDKAIDLVDEAGSRAHIELFKRKKE 527
YI+DR+LPDKAIDLVDE+ +R +E+ + ++
Sbjct: 381 YITDRFLPDKAIDLVDESAARLKMEITSKPEQ 412
>sp|O34209|CLPB2_SYNE7 Chaperone protein ClpB 2 OS=Synechococcus elongatus (strain PCC
7942) GN=clpB2 PE=3 SV=1
Length = 895
Score = 305 bits (781), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 182/445 (40%), Positives = 258/445 (57%), Gaps = 36/445 (8%)
Query: 84 RFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAVVS 143
RFT++A A++ SQ A+ L + + +H+LL L+ + ESG+ + +A V+
Sbjct: 8 RFTDQAWDAIVESQTVARQLRQQQLEVEHVLLALLDQ--------ESGVAAEILAKAGVA 59
Query: 144 IWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGL 203
+ + Q +D A + +S ++ R+ + A FI EH+ +G
Sbjct: 60 V--ANLRQPLEDFARRQPRNASGTQLYLGRGLDRLLDLAERARELWQDEFIGVEHLLMG- 116
Query: 204 FTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTAALK 263
F DD R+ + L +D +L ++ A
Sbjct: 117 FVEDDRIGRRLAQGLKLDAK---------------------TLETTIQALRSPAADEAEA 155
Query: 264 SPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVG 323
L ++ DLTA A +E +DPVIGR+ EI+R+IQ+L RR+KNNP+L+GE GVG
Sbjct: 156 EESEPSYPFLSKYGRDLTALAEQEKLDPVIGRDLEIRRVIQVLSRRSKNNPVLIGEPGVG 215
Query: 324 KTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKS-G 382
KTAIAEGLA RIV EVP L +R++SLDMG L+AGAK RGE E R+ ++ E+ S G
Sbjct: 216 KTAIAEGLAQRIVAGEVPDSLKQRRLISLDMGSLIAGAKYRGEFEERLRAVLHEVTHSDG 275
Query: 383 DVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKD 442
++LFIDE+HT++G+G G +G+ +D NLLKP L RGEL+CI +TT DE+R EKD
Sbjct: 276 QMVLFIDELHTVVGAGA---GQQGSAMDAGNLLKPMLARGELRCIGATTTDEYRRTIEKD 332
Query: 443 KALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYL 502
AL RRFQ V +S+PS ED + IL GL+E+YE HH K T A+ AA LS RYISDR+L
Sbjct: 333 PALERRFQQVYVSQPSVEDTIAILRGLKERYEGHHGVKITDGALMAAAKLSHRYISDRFL 392
Query: 503 PDKAIDLVDEAGSRAHIELFKRKKE 527
PDKAIDL+DEA ++ +E+ + E
Sbjct: 393 PDKAIDLIDEASAQLKMEITSKPSE 417
>sp|Q8DG71|CLPB2_THEEB Chaperone protein ClpB 2 OS=Thermosynechococcus elongatus (strain
BP-1) GN=clpB2 PE=3 SV=1
Length = 887
Score = 305 bits (781), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 180/445 (40%), Positives = 256/445 (57%), Gaps = 40/445 (8%)
Query: 84 RFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAVVS 143
+FT++A +A++ SQ A+ + T+H+++ L+ E+ LE R + +
Sbjct: 8 KFTDKAWEAIVKSQDVAREYRSQYLETEHVMIALLREEGLGQVILE--------RSDIDT 59
Query: 144 IWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGL 203
W D A Q + +++ S + + A + FI+ EH+ L
Sbjct: 60 EWVLKRLMDF---ARQQPRVPAGSELYCGRSLDALLDEANRLRQEEEDQFISIEHLLLA- 115
Query: 204 FTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTAALK 263
F D R+ + L D LAA +I G L
Sbjct: 116 FVGDRRIGQRLFRALNCDRQQLAATV-----------------------KAIRGAQKVLD 152
Query: 264 SPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVG 323
+ +ALE++ DLT A + +DPVIGR+ EI+R+IQ+L RRTKNNP+L+GE GVG
Sbjct: 153 QNPENKYAALEKYGRDLTEAARQGKLDPVIGRDEEIRRVIQVLSRRTKNNPVLIGEPGVG 212
Query: 324 KTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKS-G 382
KTAIAEGLA RI+ +VP L ++R++SLD+G L+AGAK RG+ E R+ ++ E+ S G
Sbjct: 213 KTAIAEGLAQRIINGDVPESLKNRRLISLDLGSLVAGAKFRGDFEDRLKAVLHEVTHSEG 272
Query: 383 DVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKD 442
++LFIDE+HT++G+G N+ + +D SNLLKP L RGEL+CI +TT DE+R EKD
Sbjct: 273 QIVLFIDELHTVVGAG----ANQNSSMDASNLLKPMLARGELRCIGATTLDEYRKYIEKD 328
Query: 443 KALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYL 502
AL RRFQ V I +PS ED + IL GL+++YE HHN K T A+ AA LS RYISDRYL
Sbjct: 329 AALERRFQQVYIGQPSVEDTISILRGLKDRYEIHHNVKITDSALVAAAMLSDRYISDRYL 388
Query: 503 PDKAIDLVDEAGSRAHIELFKRKKE 527
PDKAIDLVDEA ++ +E+ + E
Sbjct: 389 PDKAIDLVDEAAAKLKMEITTKPAE 413
>sp|Q9A9T4|CLPB_CAUCR Chaperone protein ClpB OS=Caulobacter crescentus (strain ATCC 19089
/ CB15) GN=clpB PE=3 SV=1
Length = 859
Score = 305 bits (780), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 187/447 (41%), Positives = 260/447 (58%), Gaps = 45/447 (10%)
Query: 85 FTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAE-DRHPNGFLES-GITIDKAREAVV 142
+++RA +AV +Q A + G +H+L L+ E D ++S G D+ V
Sbjct: 6 YSDRAKQAVQSAQSLALARGHQQFAPEHILKVLLEEKDGLSRALIQSAGGRPDQLDGGVE 65
Query: 143 SIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALG 202
++ T D + ++ T RVF A + +++ G F+ E + +
Sbjct: 66 TLLAKTPRVD-----------GAGGQLYMKPDTARVFAEAEKSAKAAGDAFVTTERLLIA 114
Query: 203 LFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTAAL 262
+ + G A ++ K GV L A + +G A N+ G
Sbjct: 115 I-AKEGGEAAKLFKEAGVSAQSLETAANAMRKGRTADSA-----------NAEEGY---- 158
Query: 263 KSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGV 322
AL+++ DLTA A + +DPVIGR+ EI+R IQ+L RRTKNNP+L+GE GV
Sbjct: 159 --------EALKRYARDLTAAARDGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGV 210
Query: 323 GKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKS- 381
GKTAI EGLA+RIV +VP L K+++SLDMG L+AGAK RGE E R+ ++ E+ +
Sbjct: 211 GKTAIVEGLALRIVNGDVPESLKDKKLLSLDMGSLIAGAKYRGEFEERLKAVLGEVTAAE 270
Query: 382 GDVILFIDEVHTLIGSGTVGRGNKGTG-LDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
G +ILFIDE+HTL+G+G KG G +D SNLLKP+L RGEL C+ +TT DE+R E
Sbjct: 271 GSIILFIDEMHTLVGAG------KGDGAMDASNLLKPALARGELHCVGATTLDEYRKHVE 324
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD ALARRFQPV +SEP+ ED V IL GL+EKYE HH + + AI AA LS RYI+DR
Sbjct: 325 KDAALARRFQPVFVSEPTVEDTVSILRGLKEKYEVHHGVRISDSAIVAAATLSNRYIADR 384
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKE 527
+LPDKAIDLVDEA SR +++ + +E
Sbjct: 385 FLPDKAIDLVDEASSRVRMQIDSKPEE 411
>sp|O84288|CLPC_CHLTR Probable ATP-dependent Clp protease ATP-binding subunit
OS=Chlamydia trachomatis (strain D/UW-3/Cx) GN=clpC PE=3
SV=1
Length = 854
Score = 303 bits (777), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 181/452 (40%), Positives = 265/452 (58%), Gaps = 35/452 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHP--NGFLESGITIDKAR 138
+FE+FT RA + + +++EA+ L + + T+H+LLGL+ + N G+ D A+
Sbjct: 1 MFEKFTNRAKQVIKLAKKEAQRLNHNYLGTEHILLGLLKLGQGVAVNVLRTLGVDFDTAK 60
Query: 139 EAVVS-IWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPE 197
V I + Q D A G+ K+ FE+A E + +N++ E
Sbjct: 61 HEVERLIGYGPEIQVCGDPALTGR-------------VKKSFESANEEAALLEHNYVGTE 107
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENS--- 254
H+ LG+ DG A +VL+ L VD + + L E PS + R +
Sbjct: 108 HLLLGILNQSDGVALQVLENLHVDPKEIRKEILKEL--ETFNLQLPPSSSITPRNTNSSS 165
Query: 255 -------ISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILC 307
+ G T P + SAL+ + DLT E +DPVIGR E++R+I ILC
Sbjct: 166 SSKSSSPLGGHTLGGDKP--EKLSALKAYGYDLTEMFKESRLDPVIGRSAEVERLILILC 223
Query: 308 RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGEL 367
RR KNNP+L+GE+GVGKTAI EGLA +IV EVP L KR+++LD+ L++AG K RG+
Sbjct: 224 RRRKNNPVLVGEAGVGKTAIVEGLAQKIVSGEVPEALRKKRLITLDLALMIAGTKYRGQF 283
Query: 368 EARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCI 427
E R+ ++ E++K G+++LFIDE+HT++G+G +D S++LKP+L RGE+QCI
Sbjct: 284 EERIKAVMDEVRKHGNILLFIDELHTIVGAGAA-----EGAIDASHILKPALARGEIQCI 338
Query: 428 ASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAIN 487
+TT DE+R EKD AL RRFQ +++ PS ++ V IL GL++KYE HHN T EA+
Sbjct: 339 GATTLDEYRKHIEKDAALERRFQKIVVQPPSVDETVEILRGLKKKYEEHHNVFITDEALV 398
Query: 488 AAVHLSARYISDRYLPDKAIDLVDEAGSRAHI 519
AA LS +Y+ R+LPDKAIDL+DEAG+R +
Sbjct: 399 AAAKLSDQYVHGRFLPDKAIDLLDEAGARVRV 430
>sp|Q6N1H2|CLPB_RHOPA Chaperone protein ClpB OS=Rhodopseudomonas palustris (strain ATCC
BAA-98 / CGA009) GN=clpB PE=3 SV=1
Length = 879
Score = 303 bits (775), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 188/447 (42%), Positives = 265/447 (59%), Gaps = 39/447 (8%)
Query: 83 ERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAVV 142
E++TER + +Q A G H+L L+ + G L ID+A
Sbjct: 4 EKYTERVRGFIQSAQSLAMREGHQQFSPLHILKVLLDDSEGLAGGL-----IDRAGGNSR 58
Query: 143 SIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALG 202
+I +T G S A ++ + +T R F+AA + + G +F+ E + L
Sbjct: 59 AILKATEEALGKMPKVSG---SGAGQVYLAPATARAFDAAEKAAEKAGDSFVTVERLLLA 115
Query: 203 LFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTAAL 262
L D AG++L + GV +L A A++ +L KG +S + + A
Sbjct: 116 LSLDKDSEAGQLLTKGGVTPQNLNA-AIN-------------ALRKGRTADSATAENAY- 160
Query: 263 KSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGV 322
AL+++ DLT A + +DPVIGR+ EI+R IQ+L RRTKNNP+L+GE GV
Sbjct: 161 --------DALKKYARDLTQAARDGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGV 212
Query: 323 GKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKS- 381
GKTAI EGLA+RI+ +VP L K++++LDMG L+AGAK RGE E R+ +++E+ +
Sbjct: 213 GKTAIVEGLALRILNGDVPESLKDKKLLALDMGALIAGAKYRGEFEERLKAVLNEVTAAE 272
Query: 382 GDVILFIDEVHTLIGSGTVGRGNKGTG-LDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440
G +ILFIDE+HTL+G+G K G +D SNLLKP+L RGEL CI +TT DE+R E
Sbjct: 273 GGIILFIDEMHTLVGAG------KADGAMDASNLLKPALARGELHCIGATTLDEYRKHVE 326
Query: 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500
KD ALARRFQPV +SEP+ ED V IL GL++KYE HH + A+ AAV LS RYI+DR
Sbjct: 327 KDAALARRFQPVFVSEPTVEDTVSILRGLKDKYEQHHGVRIADSALVAAVTLSNRYITDR 386
Query: 501 YLPDKAIDLVDEAGSRAHIELFKRKKE 527
+LPDKAIDL+DEA +R +++ + +E
Sbjct: 387 FLPDKAIDLMDEAAARLKMQVDSKPEE 413
>sp|Q9Z8A6|CLPC_CHLPN Probable ATP-dependent Clp protease ATP-binding subunit
OS=Chlamydia pneumoniae GN=clpC PE=3 SV=2
Length = 845
Score = 301 bits (772), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 178/446 (39%), Positives = 266/446 (59%), Gaps = 25/446 (5%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHP--NGFLESGITIDKAR 138
+FE+FT RA + + +++EA+ L + + T+H+LLGL+ + N GI D AR
Sbjct: 1 MFEKFTNRAKQVIKLAKKEAQRLNHNYLGTEHILLGLLKLGQGVAVNVLRNLGIDFDTAR 60
Query: 139 EAVVS-IWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPE 197
+ V I + Q D A G+ K+ FE+A E + +N++ E
Sbjct: 61 QEVERLIGYGPEIQVYGDPALTGR-------------VKKSFESANEEASLLEHNYVGTE 107
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQG---ELAKEGREPSLAKGVRENS 254
H+ LG+ D A +VL+ L +D + + L+ +L S + +S
Sbjct: 108 HLLLGILHQSDSVALQVLENLHIDPREVRKEILKELETFNLQLPPSSSSSSSSSRSNPSS 167
Query: 255 ISGKTA-ALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNN 313
+L S + SAL+ + DLT E +DPVIGR +E++R+I ILCRR KNN
Sbjct: 168 SKSPLGHSLGSDKNEKLSALKAYGYDLTEMVRESKLDPVIGRSSEVERLILILCRRRKNN 227
Query: 314 PILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTT 373
P+L+GE+GVGKTAI EGLA +I+ EVP L KR+++LD+ L++AG K RG+ E R+
Sbjct: 228 PVLIGEAGVGKTAIVEGLAQKIILNEVPDALRKKRLITLDLALMIAGTKYRGQFEERIKA 287
Query: 374 LISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQD 433
++ E++K G+++LFIDE+HT++G+G +D SN+LKP+L RGE+QCI +TT D
Sbjct: 288 VMDEVRKHGNILLFIDELHTIVGAGAA-----EGAIDASNILKPALARGEIQCIGATTID 342
Query: 434 EHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLS 493
E+R EKD AL RRFQ +++ PS ++ + IL GL++KYE HHN T EA+ AA LS
Sbjct: 343 EYRKHIEKDAALERRFQKIVVHPPSVDETIEILRGLKKKYEEHHNVFITEEALKAAATLS 402
Query: 494 ARYISDRYLPDKAIDLVDEAGSRAHI 519
+Y+ R+LPDKAIDL+DEAG+R +
Sbjct: 403 DQYVHGRFLPDKAIDLLDEAGARVRV 428
>sp|Q9PKA8|CLPC_CHLMU Probable ATP-dependent Clp protease ATP-binding subunit
OS=Chlamydia muridarum (strain MoPn / Nigg) GN=clpC PE=3
SV=1
Length = 870
Score = 301 bits (772), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 177/451 (39%), Positives = 266/451 (58%), Gaps = 32/451 (7%)
Query: 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHP--NGFLESGITIDKAR 138
+FE+FT RA + + +++EA+ L + + T+H+LLGL+ + N G+ D A+
Sbjct: 17 MFEKFTNRAKQVIKLAKKEAQRLNHNYLGTEHILLGLLKLGQGVAVNVLRTLGVDFDTAK 76
Query: 139 EAVVS-IWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPE 197
V I + Q D A G+ K+ FE+A E + +N++ E
Sbjct: 77 NEVERLIGYGPEIQVYGDPALTGR-------------VKKSFESANEEASILEHNYVGTE 123
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQ---------GELAKEGREPSLAK 248
H+ LG+ DG A +VL+ L +D + + L+ + S +
Sbjct: 124 HLLLGILNQADGVALQVLENLHIDPKEIRKEILKELETFNLQLPPSSSITPRNTNSSSSS 183
Query: 249 GVRENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCR 308
+ +S+ G + P + SAL+ + DLT E +DPVIGR E++R+I ILCR
Sbjct: 184 SSKSSSLGGHSLGGDKP--EKLSALKAYGYDLTEMFKEARLDPVIGRSAEVERLILILCR 241
Query: 309 RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELE 368
R KNNP+L+GE+GVGKTAI EGLA +IV EVP L KR+++LD+ L++AG K RG+ E
Sbjct: 242 RRKNNPVLIGEAGVGKTAIVEGLAQKIVSGEVPEALRKKRLITLDLALMIAGTKYRGQFE 301
Query: 369 ARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIA 428
R+ ++ E++K G+++LFIDE+HT++G+G +D S++LKP+L RGE+QCI
Sbjct: 302 ERIKAVMDEVRKHGNILLFIDELHTIVGAGAA-----EGAIDASHILKPALARGEIQCIG 356
Query: 429 STTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINA 488
+TT DE+R EKD AL RRFQ +++ PS ++ V IL GL++KYE HHN T EA+ A
Sbjct: 357 ATTLDEYRKHIEKDAALERRFQKIVVQPPSVDETVEILRGLKKKYEEHHNVFITDEALVA 416
Query: 489 AVHLSARYISDRYLPDKAIDLVDEAGSRAHI 519
A LS +Y+ R+LPDKAIDL+DEAG+R +
Sbjct: 417 AAKLSDQYVHGRFLPDKAIDLLDEAGARVRV 447
>sp|Q9LF37|CLPB3_ARATH Chaperone protein ClpB3, chloroplastic OS=Arabidopsis thaliana
GN=CLPB3 PE=1 SV=1
Length = 968
Score = 301 bits (772), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 182/445 (40%), Positives = 255/445 (57%), Gaps = 49/445 (11%)
Query: 83 ERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNG-----FLESGITIDKA 137
+ FTE A ++++ S AK + +V T+HL+ L+ + NG F + G+ K
Sbjct: 80 QEFTEMAWQSIVSSPDVAKENKQQIVETEHLMKALLEQ---KNGLARRIFSKIGVDNTKV 136
Query: 138 REAVVSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPE 197
EA Q K + AA + +F+ A ++ + ++++ E
Sbjct: 137 LEATEKFIQR-----------QPKVYGDAAGSMLGRDLEALFQRARQFKKDLKDSYVSVE 185
Query: 198 HIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISG 257
H+ L DD G+ L +S E SL + SI G
Sbjct: 186 HLVLAF--ADDKRFGKQL---------FKDFQIS-----------ERSLKSAI--ESIRG 221
Query: 258 KTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317
K + + + ALE++ DLTA A E +DPVIGR+ EI+R IQIL RRTKNNP+L+
Sbjct: 222 KQSVIDQDPEGKYEALEKYGKDLTAMAREGKLDPVIGRDDEIRRCIQILSRRTKNNPVLI 281
Query: 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISE 377
GE GVGKTAI+EGLA RIVQ +VP L++++++SLDMG L+AGAK RGE E R+ ++ E
Sbjct: 282 GEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKE 341
Query: 378 IQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHR 436
+ S G +ILFIDE+HT++G+G +D NLLKP LGRGEL+CI +TT DE+R
Sbjct: 342 VTDSEGQIILFIDEIHTVVGAGAT-----NGAMDAGNLLKPMLGRGELRCIGATTLDEYR 396
Query: 437 TQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496
EKD AL RRFQ V + +P+ ED + IL GLRE+YE HH + + A+ A LS RY
Sbjct: 397 KYIEKDPALERRFQQVYVDQPTVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRY 456
Query: 497 ISDRYLPDKAIDLVDEAGSRAHIEL 521
IS R+LPDKAIDLVDEA ++ +E+
Sbjct: 457 ISGRFLPDKAIDLVDEAAAKLKMEI 481
>sp|Q7CU92|CLPB_AGRT5 Chaperone protein ClpB OS=Agrobacterium tumefaciens (strain C58 /
ATCC 33970) GN=clpB PE=3 SV=2
Length = 874
Score = 301 bits (770), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 170/378 (44%), Positives = 228/378 (60%), Gaps = 33/378 (8%)
Query: 154 DDAAAQGKPFSSAAKMPFSIST--KRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSA 211
+DAA P S S++ +VF A + ++ G +F+ E + L S
Sbjct: 64 NDAALAKLPKVSGGNGGLSLTAPLAKVFSTAEDLAKKAGDSFVTVERLLQALAIESSAST 123
Query: 212 GRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTAALKSPGRTRAS 271
LK+ G L V N I A +
Sbjct: 124 SASLKKAGATAQALNQVI-----------------------NDIRKGRTADSANAEQGFD 160
Query: 272 ALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGL 331
AL+++ DLT A E +DPVIGR+ EI+R IQ+L RRTKNNP+L+GE GVGKTAIAEGL
Sbjct: 161 ALKKYARDLTEEAREGRLDPVIGRDDEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIAEGL 220
Query: 332 AIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ-KSGDVILFIDE 390
A+RIV +VP L K++M+LDMG L+AGAK RGE E R+ +++E+Q ++G +ILFIDE
Sbjct: 221 ALRIVNGDVPESLKDKKLMALDMGALIAGAKYRGEFEERLKAVLNEVQAENGGIILFIDE 280
Query: 391 VHTLIGSGTVGRGNKGTG-LDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRF 449
+HTL+G+G K G +D SNLLKP+L RGEL C+ +TT DE+R EKD ALARRF
Sbjct: 281 MHTLVGAG------KADGAMDASNLLKPALARGELHCVGATTLDEYRKHVEKDPALARRF 334
Query: 450 QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDL 509
QPVL+ EP+ ED + IL GL+EKYE HH + + A+ AA LS RYI+DR+LPDKAIDL
Sbjct: 335 QPVLVDEPNVEDTISILRGLKEKYEQHHKVRISDSALVAAATLSNRYITDRFLPDKAIDL 394
Query: 510 VDEAGSRAHIELFKRKKE 527
+DEA SR +++ + +E
Sbjct: 395 MDEAASRLRMQVDSKPEE 412
>sp|Q89YY3|CLPB_BACTN Chaperone protein ClpB OS=Bacteroides thetaiotaomicron (strain ATCC
29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) GN=clpB
PE=3 SV=1
Length = 862
Score = 300 bits (769), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 178/442 (40%), Positives = 264/442 (59%), Gaps = 43/442 (9%)
Query: 82 FERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAV 141
F FT ++ +AV + +S G+ + H+L G++ + F+ + ++ + A+
Sbjct: 3 FNNFTIKSQEAVQEAVNLVQSRGQQAIEPAHILHGVMKVGENVTNFIFQKLGMNGQQVAL 62
Query: 142 VSIWHSTNNQDTDDAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIAL 201
V D + P S + S + V + A +YS+ G F++ EHI L
Sbjct: 63 VV-----------DKQIESLPKVSGGEPYLSRESNEVLQKATQYSKEMGDEFVSLEHILL 111
Query: 202 GLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREPSLAKGVRENSISGKTAA 261
L TV + +LK G+ L A++ L+ KG + S S +
Sbjct: 112 ALLTVK-STVSTILKDAGMTEKELRN-AINELR-------------KGEKVTSQSSED-- 154
Query: 262 LKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESG 321
+LE++ ++L A +DPVIGR+ EI+R++QIL RRTKNNPIL+GE G
Sbjct: 155 -------NYQSLEKYAINLNEAARSGKLDPVIGRDEEIRRVLQILSRRTKNNPILIGEPG 207
Query: 322 VGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKS 381
GKTAI EGLA RI++ +VP L +K++ SLDMG L+AGAK +GE E R+ ++++E++KS
Sbjct: 208 TGKTAIVEGLAHRILRGDVPENLKNKQVYSLDMGALVAGAKYKGEFEERLKSVVNEVKKS 267
Query: 382 -GDVILFIDEVHTLIGSGTVGRGNKGTG-LDISNLLKPSLGRGELQCIASTTQDEHRTQF 439
GD+ILFIDE+HTL+G+G KG G +D +N+LKP+L RGEL+ I +TT DE++ F
Sbjct: 268 EGDIILFIDEIHTLVGAG------KGEGAMDAANILKPALARGELRSIGATTLDEYQKYF 321
Query: 440 EKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499
EKDKAL RRFQ V + EP + IL GL+E+YE HH+ + +AI AAV LS+RYI+D
Sbjct: 322 EKDKALERRFQIVQVDEPDTLSTISILRGLKERYENHHHVRIKDDAIIAAVELSSRYITD 381
Query: 500 RYLPDKAIDLVDEAGSRAHIEL 521
R+LPDKAIDL+DEA ++ +E+
Sbjct: 382 RFLPDKAIDLMDEAAAKLRMEV 403
>sp|Q6MIV0|CLPB_BDEBA Chaperone protein ClpB OS=Bdellovibrio bacteriovorus (strain ATCC
15356 / DSM 50701 / NCIB 9529 / HD100) GN=clpB PE=3 SV=1
Length = 855
Score = 300 bits (769), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 164/355 (46%), Positives = 223/355 (62%), Gaps = 31/355 (8%)
Query: 168 KMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAA 227
KM S +++F+AA ++ G ++I+ EH + + D + K+ N + A
Sbjct: 75 KMFASPRLEKIFQAAETEAQEWGDSYISTEHFFMAMLKGGDSELNGLFKK-----NKVTA 129
Query: 228 VAVSRLQGELAKEGREPSLAKGVRENSISGKTAALKSPGRTRASALEQFCVDLTARASEE 287
A E I GK + L ++ DLTA A+E
Sbjct: 130 EAARTALTE------------------IRGKQKVTDDDPENKYEVLNKYARDLTALAAEG 171
Query: 288 LIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSK 347
+DPV+GR+ EI+R++Q+L RRTKNNP+L+GE GVGKTAIAEGLA+RI++ +VP L+ K
Sbjct: 172 KLDPVVGRDEEIRRVVQVLSRRTKNNPVLIGEPGVGKTAIAEGLALRIIKQDVPDNLIGK 231
Query: 348 RIMSLDMGLLMAGAKERGELEARVTTLISEIQKS-GDVILFIDEVHTLIGSG-TVGRGNK 405
++MSLDMG L+AGAK RGE E R+ +I E+ S G +ILFIDE+HTL+G+G T G
Sbjct: 232 KLMSLDMGALIAGAKYRGEFEDRLKAVIKEVTSSDGQIILFIDELHTLVGAGKTEG---- 287
Query: 406 GTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRI 465
+D LLKP+L RGEL+CI +TT DE+R EKD AL RRFQ V++ EPS EDA+ I
Sbjct: 288 --AMDAGQLLKPALARGELRCIGATTLDEYRKYIEKDAALERRFQTVMVEEPSVEDAITI 345
Query: 466 LLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIE 520
L GL+EKYE HH + T A+ +AV LS RYI++R+LPDKAIDL+DEA S+ IE
Sbjct: 346 LRGLKEKYEVHHGIRITDAALVSAVKLSHRYITNRFLPDKAIDLIDEAASKLGIE 400
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 212,494,835
Number of Sequences: 539616
Number of extensions: 8887682
Number of successful extensions: 33887
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 222
Number of HSP's that attempted gapping in prelim test: 32620
Number of HSP's gapped (non-prelim): 781
length of query: 591
length of database: 191,569,459
effective HSP length: 123
effective length of query: 468
effective length of database: 125,196,691
effective search space: 58592051388
effective search space used: 58592051388
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)