Query 007723
Match_columns 591
No_of_seqs 498 out of 3885
Neff 7.8
Searched_HMMs 46136
Date Thu Mar 28 14:28:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007723.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007723hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0542 clpA ATP-binding subun 100.0 1.2E-70 2.6E-75 606.9 42.6 435 84-563 1-435 (786)
2 CHL00095 clpC Clp protease ATP 100.0 2.2E-62 4.8E-67 566.3 45.2 442 81-562 1-444 (821)
3 TIGR03345 VI_ClpV1 type VI sec 100.0 5.7E-60 1.2E-64 543.6 44.9 413 85-527 1-420 (852)
4 TIGR02639 ClpA ATP-dependent C 100.0 3.9E-60 8.5E-65 542.0 42.5 409 85-522 1-410 (731)
5 TIGR03346 chaperone_ClpB ATP-d 100.0 2.3E-59 5E-64 542.6 45.0 403 85-527 1-406 (852)
6 PRK10865 protein disaggregatio 100.0 3.2E-58 7E-63 530.8 43.9 408 80-527 1-411 (857)
7 PRK11034 clpA ATP-dependent Cl 100.0 8.2E-56 1.8E-60 500.2 40.2 411 85-520 2-412 (758)
8 KOG1051 Chaperone HSP104 and r 100.0 2.5E-49 5.4E-54 442.8 32.8 411 78-527 5-420 (898)
9 COG2256 MGS1 ATPase related to 100.0 1.5E-28 3.2E-33 250.6 17.0 237 278-552 12-280 (436)
10 PRK07003 DNA polymerase III su 99.9 1.1E-24 2.3E-29 240.4 17.3 260 278-577 4-285 (830)
11 KOG0989 Replication factor C, 99.9 2.5E-24 5.4E-29 212.6 16.2 260 276-579 22-294 (346)
12 PRK14956 DNA polymerase III su 99.9 1.6E-23 3.5E-28 223.8 19.7 254 278-571 6-282 (484)
13 PRK12323 DNA polymerase III su 99.9 1E-23 2.2E-28 230.3 17.5 253 278-570 4-283 (700)
14 PF05496 RuvB_N: Holliday junc 99.9 7.1E-24 1.5E-28 204.0 11.1 189 278-514 12-226 (233)
15 PRK14958 DNA polymerase III su 99.9 5.4E-23 1.2E-27 225.3 19.2 259 278-576 4-284 (509)
16 PRK14960 DNA polymerase III su 99.9 6.4E-23 1.4E-27 224.5 19.0 255 278-572 3-279 (702)
17 KOG2028 ATPase related to the 99.9 4.5E-23 9.8E-28 206.7 14.9 191 276-498 124-331 (554)
18 PRK14949 DNA polymerase III su 99.9 1.2E-22 2.5E-27 228.3 20.0 252 278-569 4-277 (944)
19 PRK07994 DNA polymerase III su 99.9 1.4E-22 2.9E-27 225.0 19.8 254 278-571 4-279 (647)
20 PRK14964 DNA polymerase III su 99.9 3E-22 6.6E-27 216.4 19.8 248 279-566 2-271 (491)
21 COG2812 DnaX DNA polymerase II 99.9 1E-22 2.2E-27 219.3 15.1 261 278-578 4-286 (515)
22 PRK14951 DNA polymerase III su 99.9 2.3E-22 4.9E-27 222.9 18.4 260 278-577 4-290 (618)
23 PRK14952 DNA polymerase III su 99.9 7.8E-22 1.7E-26 218.0 20.8 252 280-570 3-278 (584)
24 PLN03025 replication factor C 99.9 5.7E-22 1.2E-26 206.9 18.7 252 278-571 1-258 (319)
25 PRK08691 DNA polymerase III su 99.9 5E-22 1.1E-26 219.5 18.5 260 278-577 4-285 (709)
26 COG1222 RPT1 ATP-dependent 26S 99.9 7.7E-22 1.7E-26 198.7 16.7 185 287-496 148-356 (406)
27 PRK14962 DNA polymerase III su 99.9 1.6E-21 3.5E-26 211.6 20.4 254 278-570 2-276 (472)
28 PRK06645 DNA polymerase III su 99.9 2E-21 4.4E-26 211.6 21.0 257 278-571 9-291 (507)
29 PRK14957 DNA polymerase III su 99.9 1.6E-21 3.5E-26 213.6 19.4 259 278-576 4-284 (546)
30 PRK07764 DNA polymerase III su 99.9 1.7E-21 3.6E-26 222.9 20.1 251 278-567 3-277 (824)
31 PRK14961 DNA polymerase III su 99.9 2.7E-21 5.9E-26 205.0 20.0 253 278-570 4-278 (363)
32 PRK13342 recombination factor 99.9 3.1E-21 6.8E-26 208.1 20.6 194 279-515 1-202 (413)
33 COG1223 Predicted ATPase (AAA+ 99.9 6.2E-21 1.3E-25 183.9 16.9 193 281-496 112-318 (368)
34 KOG0730 AAA+-type ATPase [Post 99.9 4E-21 8.6E-26 206.5 16.3 201 286-516 430-651 (693)
35 PRK14969 DNA polymerase III su 99.9 4.3E-21 9.3E-26 211.6 16.7 259 278-576 4-284 (527)
36 KOG0738 AAA+-type ATPase [Post 99.9 8.1E-21 1.8E-25 192.3 16.7 218 275-522 197-436 (491)
37 KOG0991 Replication factor C, 99.9 4.9E-21 1.1E-25 181.9 13.5 256 272-571 9-272 (333)
38 PRK14965 DNA polymerase III su 99.9 1.4E-20 3E-25 209.9 18.6 253 278-570 4-278 (576)
39 PRK13341 recombination factor 99.9 2.3E-20 5E-25 211.3 20.6 201 278-515 16-223 (725)
40 PRK05563 DNA polymerase III su 99.8 4.1E-20 8.9E-25 205.3 21.2 252 278-569 4-277 (559)
41 PRK08451 DNA polymerase III su 99.8 4E-20 8.6E-25 201.7 20.5 245 279-563 3-269 (535)
42 PRK14959 DNA polymerase III su 99.8 3.6E-20 7.8E-25 204.1 20.2 247 278-564 4-272 (624)
43 PRK09111 DNA polymerase III su 99.8 4.7E-20 1E-24 204.9 20.7 253 278-570 12-291 (598)
44 PRK14963 DNA polymerase III su 99.8 9.4E-20 2E-24 199.4 21.0 247 280-567 4-271 (504)
45 PRK05896 DNA polymerase III su 99.8 7.8E-20 1.7E-24 200.5 20.3 251 278-568 4-276 (605)
46 KOG0733 Nuclear AAA ATPase (VC 99.8 3E-20 6.6E-25 197.0 16.4 189 286-499 186-398 (802)
47 PRK06647 DNA polymerase III su 99.8 1.3E-19 2.7E-24 200.7 20.6 252 278-569 4-277 (563)
48 PRK07133 DNA polymerase III su 99.8 1.9E-19 4E-24 201.1 20.9 250 278-567 6-274 (725)
49 PRK14953 DNA polymerase III su 99.8 2.5E-19 5.4E-24 195.5 19.8 253 278-570 4-278 (486)
50 PRK14955 DNA polymerase III su 99.8 3.2E-19 6.8E-24 191.4 19.8 254 278-567 4-288 (397)
51 COG2255 RuvB Holliday junction 99.8 1.5E-19 3.2E-24 177.1 15.1 197 278-522 14-236 (332)
52 PRK14954 DNA polymerase III su 99.8 4.5E-19 9.9E-24 197.3 20.5 255 279-569 5-290 (620)
53 PRK06305 DNA polymerase III su 99.8 8E-19 1.7E-23 190.3 21.8 250 278-567 5-277 (451)
54 KOG0739 AAA+-type ATPase [Post 99.8 3.7E-19 8.1E-24 174.5 17.0 191 286-499 129-337 (439)
55 PRK12402 replication factor C 99.8 1E-18 2.2E-23 183.7 21.2 248 279-564 4-278 (337)
56 TIGR02881 spore_V_K stage V sp 99.8 9.9E-19 2.1E-23 177.4 20.2 216 288-520 4-241 (261)
57 KOG0733 Nuclear AAA ATPase (VC 99.8 5.9E-19 1.3E-23 187.3 18.0 184 288-494 509-713 (802)
58 PRK14971 DNA polymerase III su 99.8 9.4E-19 2E-23 195.8 19.8 254 278-570 5-280 (614)
59 KOG0736 Peroxisome assembly fa 99.8 5.5E-19 1.2E-23 191.8 16.8 192 283-499 665-881 (953)
60 COG0542 clpA ATP-binding subun 99.8 9.2E-18 2E-22 187.3 26.4 195 269-493 478-733 (786)
61 TIGR02902 spore_lonB ATP-depen 99.8 6.4E-19 1.4E-23 195.0 16.3 214 276-517 51-312 (531)
62 PRK14950 DNA polymerase III su 99.8 2.4E-18 5.1E-23 192.9 21.1 251 278-568 4-277 (585)
63 TIGR02397 dnaX_nterm DNA polym 99.8 3.4E-18 7.3E-23 181.1 20.9 249 278-566 2-272 (355)
64 CHL00181 cbbX CbbX; Provisiona 99.8 7.8E-18 1.7E-22 172.4 22.2 216 291-522 24-259 (287)
65 TIGR02639 ClpA ATP-dependent C 99.8 2.7E-17 5.9E-22 189.2 29.1 178 291-493 455-690 (731)
66 PRK14970 DNA polymerase III su 99.8 4E-18 8.6E-23 181.5 19.9 250 278-567 5-264 (367)
67 PRK00440 rfc replication facto 99.8 5.7E-18 1.2E-22 176.5 19.8 245 278-564 5-254 (319)
68 PRK14948 DNA polymerase III su 99.8 5.6E-18 1.2E-22 189.6 20.6 247 278-565 4-274 (620)
69 KOG0734 AAA+-type ATPase conta 99.8 7.5E-19 1.6E-23 183.9 12.6 169 286-473 300-487 (752)
70 PRK00080 ruvB Holliday junctio 99.8 4.5E-18 9.7E-23 178.3 17.4 189 280-516 15-229 (328)
71 CHL00195 ycf46 Ycf46; Provisio 99.8 8.5E-18 1.9E-22 182.8 19.7 205 287-517 225-444 (489)
72 CHL00095 clpC Clp protease ATP 99.8 1.6E-16 3.5E-21 184.8 31.1 181 291-493 510-760 (821)
73 TIGR00635 ruvB Holliday juncti 99.8 1.1E-17 2.4E-22 173.5 18.0 183 287-517 1-209 (305)
74 PRK04195 replication factor C 99.8 9.6E-18 2.1E-22 184.4 17.7 193 278-512 2-205 (482)
75 TIGR02880 cbbX_cfxQ probable R 99.8 6.5E-17 1.4E-21 165.7 21.8 212 291-519 23-255 (284)
76 PRK11034 clpA ATP-dependent Cl 99.8 4.7E-16 1E-20 177.2 29.9 205 291-520 459-722 (758)
77 PHA02544 44 clamp loader, smal 99.7 7.7E-17 1.7E-21 168.1 20.9 199 278-514 9-214 (316)
78 PRK03992 proteasome-activating 99.7 5.8E-17 1.3E-21 173.3 19.5 199 287-515 128-350 (389)
79 PTZ00454 26S protease regulato 99.7 5.2E-17 1.1E-21 173.1 17.9 200 287-515 142-364 (398)
80 PTZ00361 26 proteosome regulat 99.7 4.1E-17 9E-22 175.0 16.9 204 282-515 175-402 (438)
81 TIGR01241 FtsH_fam ATP-depende 99.7 6E-17 1.3E-21 178.8 18.0 204 286-516 51-274 (495)
82 COG0464 SpoVK ATPases of the A 99.7 1.1E-16 2.4E-21 177.0 18.9 202 286-515 238-460 (494)
83 TIGR01243 CDC48 AAA family ATP 99.7 1.4E-16 3E-21 183.9 20.3 202 286-516 449-671 (733)
84 PRK08084 DNA replication initi 99.7 1.4E-16 3E-21 159.0 17.7 181 288-499 20-205 (235)
85 TIGR03689 pup_AAA proteasome A 99.7 7.3E-17 1.6E-21 175.4 16.8 183 281-471 173-379 (512)
86 PLN00020 ribulose bisphosphate 99.7 3E-16 6.4E-21 161.1 19.8 159 309-493 146-328 (413)
87 KOG0737 AAA+-type ATPase [Post 99.7 8.3E-17 1.8E-21 163.5 13.1 182 288-498 90-297 (386)
88 KOG0740 AAA+-type ATPase [Post 99.7 3E-16 6.5E-21 164.8 17.4 207 282-515 145-369 (428)
89 KOG0731 AAA+-type ATPase conta 99.7 1.4E-16 3.1E-21 176.5 15.6 202 287-515 308-531 (774)
90 CHL00176 ftsH cell division pr 99.7 6E-16 1.3E-20 173.5 19.3 203 287-516 180-402 (638)
91 KOG0735 AAA+-type ATPase [Post 99.7 2.9E-16 6.3E-21 169.4 15.3 188 287-498 664-871 (952)
92 TIGR02903 spore_lon_C ATP-depe 99.7 1.8E-15 3.8E-20 170.2 22.4 213 277-517 141-402 (615)
93 TIGR03346 chaperone_ClpB ATP-d 99.7 9.8E-15 2.1E-19 170.5 29.4 182 290-493 565-804 (852)
94 PRK06893 DNA replication initi 99.7 1.4E-15 3E-20 151.2 15.8 182 286-499 12-199 (229)
95 TIGR01242 26Sp45 26S proteasom 99.7 2.2E-15 4.8E-20 160.2 18.1 201 286-516 118-342 (364)
96 PRK05642 DNA replication initi 99.6 3.4E-15 7.3E-20 148.9 16.6 166 312-512 46-214 (234)
97 PRK07940 DNA polymerase III su 99.6 2.3E-15 5E-20 160.2 15.6 175 288-497 3-207 (394)
98 KOG0728 26S proteasome regulat 99.6 3.1E-15 6.7E-20 143.9 13.4 181 281-480 138-341 (404)
99 KOG0726 26S proteasome regulat 99.6 1.2E-15 2.7E-20 149.5 10.5 171 282-471 177-370 (440)
100 TIGR01243 CDC48 AAA family ATP 99.6 1E-14 2.2E-19 168.5 18.9 188 286-498 174-382 (733)
101 COG0465 HflB ATP-dependent Zn 99.6 4.4E-15 9.6E-20 162.2 14.3 200 287-515 147-368 (596)
102 PRK08727 hypothetical protein; 99.6 3.9E-14 8.5E-19 141.2 19.4 188 288-513 17-208 (233)
103 PF00308 Bac_DnaA: Bacterial d 99.6 5.6E-15 1.2E-19 145.7 12.9 188 288-499 6-204 (219)
104 KOG2035 Replication factor C, 99.6 1.5E-14 3.2E-19 141.4 14.3 203 280-514 3-233 (351)
105 CHL00206 ycf2 Ycf2; Provisiona 99.6 1.1E-14 2.3E-19 172.4 15.2 180 311-522 1630-1862(2281)
106 TIGR00763 lon ATP-dependent pr 99.6 1.9E-14 4E-19 166.7 16.9 186 291-501 321-542 (775)
107 PRK09112 DNA polymerase III su 99.6 4.5E-14 9.7E-19 148.4 17.7 200 284-513 17-244 (351)
108 KOG0727 26S proteasome regulat 99.6 5.3E-15 1.1E-19 142.5 9.7 146 309-473 187-342 (408)
109 KOG0652 26S proteasome regulat 99.6 1.2E-14 2.5E-19 140.7 11.4 185 288-497 169-377 (424)
110 TIGR02928 orc1/cdc6 family rep 99.6 2E-13 4.2E-18 145.3 21.3 218 281-519 9-256 (365)
111 PRK10733 hflB ATP-dependent me 99.6 5.7E-14 1.2E-18 159.1 18.0 203 287-517 149-372 (644)
112 KOG0729 26S proteasome regulat 99.6 9.8E-15 2.1E-19 141.6 9.9 166 288-472 175-363 (435)
113 TIGR03420 DnaA_homol_Hda DnaA 99.6 1.1E-13 2.3E-18 137.2 17.7 189 287-514 12-206 (226)
114 KOG0742 AAA+-type ATPase [Post 99.6 5E-14 1.1E-18 143.9 15.3 257 288-572 353-624 (630)
115 KOG0990 Replication factor C, 99.6 1.9E-14 4.1E-19 143.6 11.2 209 270-515 21-238 (360)
116 PRK06620 hypothetical protein; 99.6 7E-14 1.5E-18 137.3 15.1 162 288-499 14-185 (214)
117 PRK08903 DnaA regulatory inact 99.6 1.1E-13 2.5E-18 137.3 16.6 176 286-499 14-195 (227)
118 TIGR00602 rad24 checkpoint pro 99.5 7.7E-14 1.7E-18 155.6 16.7 223 277-515 71-329 (637)
119 PF00004 AAA: ATPase family as 99.5 4.1E-14 9E-19 127.4 11.7 122 314-454 1-130 (132)
120 PTZ00112 origin recognition co 99.5 2E-13 4.4E-18 152.2 19.0 209 290-516 755-988 (1164)
121 PRK00411 cdc6 cell division co 99.5 1E-12 2.2E-17 141.3 23.9 210 290-520 30-265 (394)
122 KOG0741 AAA+-type ATPase [Post 99.5 1.2E-14 2.7E-19 152.4 8.6 171 309-497 254-440 (744)
123 PRK05201 hslU ATP-dependent pr 99.5 2.8E-13 6E-18 142.4 18.6 112 382-495 249-382 (443)
124 TIGR00390 hslU ATP-dependent p 99.5 3.4E-13 7.4E-18 141.7 18.9 113 381-495 246-380 (441)
125 KOG0730 AAA+-type ATPase [Post 99.5 1.3E-13 2.8E-18 149.2 16.0 195 290-514 184-398 (693)
126 CHL00081 chlI Mg-protoporyphyr 99.5 1.6E-13 3.5E-18 143.0 16.3 173 278-469 4-231 (350)
127 PRK09087 hypothetical protein; 99.5 1.6E-13 3.5E-18 135.9 15.5 177 288-513 19-202 (226)
128 PRK13407 bchI magnesium chelat 99.5 1.6E-13 3.4E-18 142.8 15.7 164 286-469 4-215 (334)
129 PRK07471 DNA polymerase III su 99.5 1.6E-13 3.4E-18 145.0 16.0 196 284-511 13-240 (365)
130 TIGR02640 gas_vesic_GvpN gas v 99.5 1.8E-13 3.9E-18 138.9 15.7 163 300-497 12-216 (262)
131 PRK05564 DNA polymerase III su 99.5 3.4E-13 7.4E-18 140.5 17.9 174 288-495 2-182 (313)
132 PRK12422 chromosomal replicati 99.5 2.6E-13 5.6E-18 147.0 17.5 187 288-499 109-309 (445)
133 PRK00149 dnaA chromosomal repl 99.5 1.9E-13 4E-18 149.4 16.2 190 288-499 120-318 (450)
134 KOG0732 AAA+-type ATPase conta 99.5 1.3E-13 2.9E-18 157.0 14.7 197 285-499 260-476 (1080)
135 PRK14088 dnaA chromosomal repl 99.5 4.5E-13 9.7E-18 145.4 18.2 189 288-499 103-301 (440)
136 PRK05342 clpX ATP-dependent pr 99.5 5E-13 1.1E-17 143.0 18.0 191 292-493 73-357 (412)
137 TIGR00362 DnaA chromosomal rep 99.5 3.7E-13 7.9E-18 145.3 16.8 190 288-499 108-306 (405)
138 COG1224 TIP49 DNA helicase TIP 99.5 3.7E-13 8E-18 135.9 15.3 115 383-520 292-415 (450)
139 PRK14086 dnaA chromosomal repl 99.5 5.6E-13 1.2E-17 146.9 17.5 189 288-499 286-484 (617)
140 TIGR02030 BchI-ChlI magnesium 99.5 2.3E-13 5E-18 141.9 12.9 160 289-468 3-217 (337)
141 COG0466 Lon ATP-dependent Lon 99.5 6.3E-13 1.4E-17 145.1 15.9 197 291-514 324-558 (782)
142 PRK14087 dnaA chromosomal repl 99.5 6.4E-13 1.4E-17 144.4 15.3 193 287-499 112-315 (450)
143 PRK04132 replication factor C 99.5 7.8E-13 1.7E-17 151.1 16.4 211 315-571 568-790 (846)
144 PRK10787 DNA-binding ATP-depen 99.5 5.2E-13 1.1E-17 153.5 15.2 185 291-501 323-543 (784)
145 PRK07399 DNA polymerase III su 99.5 9.4E-13 2E-17 136.5 15.5 194 288-512 2-224 (314)
146 KOG0651 26S proteasome regulat 99.4 2.4E-13 5.2E-18 134.9 9.2 170 285-473 127-319 (388)
147 TIGR03345 VI_ClpV1 type VI sec 99.4 3.8E-12 8.3E-17 148.0 20.0 182 291-494 567-810 (852)
148 KOG2004 Mitochondrial ATP-depe 99.4 2E-12 4.4E-17 140.4 15.3 184 291-501 412-633 (906)
149 PRK13531 regulatory ATPase Rav 99.4 5.3E-12 1.1E-16 135.4 18.0 211 291-527 21-274 (498)
150 PF06068 TIP49: TIP49 C-termin 99.4 3.2E-12 7E-17 131.3 15.4 109 383-513 279-395 (398)
151 COG1474 CDC6 Cdc6-related prot 99.4 2.5E-11 5.5E-16 128.1 21.7 220 291-532 18-260 (366)
152 PRK10865 protein disaggregatio 99.4 9.7E-12 2.1E-16 145.0 20.1 182 290-493 568-807 (857)
153 TIGR02442 Cob-chelat-sub cobal 99.4 1.8E-12 3.8E-17 146.9 13.4 246 289-559 3-303 (633)
154 TIGR00678 holB DNA polymerase 99.4 4.2E-12 9.1E-17 122.4 13.8 162 301-497 3-185 (188)
155 PF05621 TniB: Bacterial TniB 99.4 2.9E-12 6.2E-17 129.4 12.9 219 292-524 36-276 (302)
156 COG0593 DnaA ATPase involved i 99.4 9.5E-12 2.1E-16 131.2 17.1 196 278-499 78-282 (408)
157 TIGR00382 clpX endopeptidase C 99.4 8.2E-12 1.8E-16 133.1 16.6 191 292-493 79-363 (413)
158 PRK08058 DNA polymerase III su 99.4 3.4E-12 7.3E-17 133.7 13.3 154 289-467 4-179 (329)
159 PF05673 DUF815: Protein of un 99.4 2.7E-11 5.9E-16 118.8 18.4 193 286-514 23-246 (249)
160 COG0470 HolB ATPase involved i 99.4 1.6E-11 3.4E-16 128.3 16.9 173 291-500 2-196 (325)
161 KOG0744 AAA+-type ATPase [Post 99.4 6.9E-12 1.5E-16 125.3 13.0 153 314-474 180-344 (423)
162 TIGR02974 phageshock_pspF psp 99.3 3.1E-12 6.7E-17 133.8 10.6 181 292-493 1-214 (329)
163 smart00350 MCM minichromosome 99.3 4.6E-12 1E-16 140.2 11.9 247 290-561 203-505 (509)
164 COG2204 AtoC Response regulato 99.3 3E-12 6.4E-17 136.8 9.9 185 288-493 139-355 (464)
165 COG3829 RocR Transcriptional r 99.3 1.5E-12 3.1E-17 139.0 6.6 181 287-492 242-459 (560)
166 COG0714 MoxR-like ATPases [Gen 99.3 1.7E-11 3.7E-16 128.6 14.6 212 291-527 25-286 (329)
167 COG1239 ChlI Mg-chelatase subu 99.3 1.6E-11 3.4E-16 128.0 13.4 242 289-560 16-322 (423)
168 PRK11608 pspF phage shock prot 99.3 7.7E-12 1.7E-16 130.9 11.1 185 288-493 4-221 (326)
169 TIGR01817 nifA Nif-specific re 99.3 3.6E-12 7.9E-17 142.3 9.2 189 284-493 190-409 (534)
170 PF13177 DNA_pol3_delta2: DNA 99.3 1.6E-11 3.5E-16 115.4 11.4 142 294-458 1-162 (162)
171 PRK08769 DNA polymerase III su 99.3 7E-11 1.5E-15 122.3 16.9 173 295-495 9-200 (319)
172 PRK05707 DNA polymerase III su 99.3 3.2E-11 6.9E-16 125.8 14.1 157 308-495 18-195 (328)
173 TIGR01650 PD_CobS cobaltochela 99.3 1.8E-11 3.9E-16 125.8 11.6 173 292-494 47-253 (327)
174 COG3604 FhlA Transcriptional r 99.3 7.5E-12 1.6E-16 131.9 8.1 185 288-493 221-437 (550)
175 PTZ00111 DNA replication licen 99.3 3E-11 6.6E-16 137.5 13.4 253 290-563 450-807 (915)
176 PRK15429 formate hydrogenlyase 99.3 5.6E-11 1.2E-15 136.6 15.7 194 279-493 363-590 (686)
177 COG1221 PspF Transcriptional r 99.3 1.1E-11 2.3E-16 130.4 8.9 207 286-518 74-310 (403)
178 PRK07993 DNA polymerase III su 99.3 1.2E-10 2.6E-15 121.8 16.3 169 296-496 8-197 (334)
179 KOG1969 DNA replication checkp 99.3 2.5E-11 5.4E-16 132.4 11.3 196 276-515 257-516 (877)
180 TIGR02329 propionate_PrpR prop 99.3 2.3E-11 5.1E-16 134.1 11.2 183 287-490 209-421 (526)
181 PF01078 Mg_chelatase: Magnesi 99.2 2.6E-12 5.7E-17 123.4 3.1 134 288-436 1-162 (206)
182 PRK05022 anaerobic nitric oxid 99.2 3.4E-11 7.3E-16 133.5 11.4 185 288-493 185-401 (509)
183 PRK11388 DNA-binding transcrip 99.2 1.1E-10 2.4E-15 133.3 15.3 183 287-493 322-535 (638)
184 PRK10820 DNA-binding transcrip 99.2 5.9E-11 1.3E-15 131.8 12.4 184 285-492 199-417 (520)
185 PRK15424 propionate catabolism 99.2 8.4E-11 1.8E-15 129.7 13.5 187 287-490 216-436 (538)
186 COG1219 ClpX ATP-dependent pro 99.2 1.2E-10 2.7E-15 116.3 12.7 192 292-494 63-347 (408)
187 PRK06871 DNA polymerase III su 99.2 3E-10 6.5E-15 117.8 16.1 149 296-468 8-177 (325)
188 TIGR02031 BchD-ChlD magnesium 99.2 8.9E-11 1.9E-15 131.7 12.5 219 308-559 13-257 (589)
189 cd00009 AAA The AAA+ (ATPases 99.2 1.2E-10 2.6E-15 105.5 11.1 143 293-454 1-149 (151)
190 PF00158 Sigma54_activat: Sigm 99.2 1.8E-10 3.9E-15 108.8 11.5 142 292-454 1-167 (168)
191 KOG1942 DNA helicase, TBP-inte 99.2 2.5E-10 5.4E-15 112.7 12.6 118 382-521 296-422 (456)
192 PHA02244 ATPase-like protein 99.2 5E-10 1.1E-14 116.5 15.4 141 292-459 98-263 (383)
193 PF01637 Arch_ATPase: Archaeal 99.2 5.7E-11 1.2E-15 117.3 8.2 198 292-496 1-227 (234)
194 TIGR03015 pepcterm_ATPase puta 99.2 8.5E-10 1.8E-14 112.2 16.9 182 310-515 42-244 (269)
195 KOG0743 AAA+-type ATPase [Post 99.2 3.2E-10 6.8E-15 119.0 13.7 158 285-467 196-380 (457)
196 TIGR00764 lon_rel lon-related 99.2 7.6E-10 1.6E-14 124.5 17.6 124 381-520 216-374 (608)
197 PRK11331 5-methylcytosine-spec 99.2 4.2E-10 9.2E-15 119.9 14.2 151 289-457 174-358 (459)
198 KOG0735 AAA+-type ATPase [Post 99.1 7E-10 1.5E-14 120.8 15.8 188 310-519 430-626 (952)
199 TIGR00368 Mg chelatase-related 99.1 3.9E-10 8.4E-15 123.6 13.9 150 288-461 190-395 (499)
200 COG1220 HslU ATP-dependent pro 99.1 7.8E-10 1.7E-14 111.4 14.5 112 382-495 250-383 (444)
201 PRK06964 DNA polymerase III su 99.1 5.9E-10 1.3E-14 116.5 12.5 154 296-468 7-202 (342)
202 COG0606 Predicted ATPase with 99.1 2.6E-10 5.6E-15 120.5 9.8 148 288-459 177-381 (490)
203 PF07724 AAA_2: AAA domain (Cd 99.1 1.1E-10 2.3E-15 110.6 6.3 112 311-434 3-131 (171)
204 COG2607 Predicted ATPase (AAA+ 99.1 4.7E-09 1E-13 101.5 17.4 194 287-515 57-279 (287)
205 KOG0745 Putative ATP-dependent 99.1 2E-09 4.3E-14 111.6 15.4 174 310-494 225-488 (564)
206 PRK06090 DNA polymerase III su 99.1 1.5E-09 3.2E-14 112.4 14.2 149 296-467 9-177 (319)
207 PF07728 AAA_5: AAA domain (dy 99.1 1.8E-10 4E-15 105.2 5.9 111 313-449 1-139 (139)
208 smart00763 AAA_PrkA PrkA AAA d 99.0 3.5E-09 7.7E-14 110.2 14.2 99 381-493 235-349 (361)
209 PRK13765 ATP-dependent proteas 99.0 2.9E-09 6.4E-14 119.5 14.4 127 381-523 225-386 (637)
210 PRK09862 putative ATP-dependen 99.0 9.5E-10 2.1E-14 120.1 9.8 149 288-460 189-391 (506)
211 TIGR02915 PEP_resp_reg putativ 99.0 9.5E-10 2.1E-14 120.3 9.4 185 288-493 137-353 (445)
212 PRK10923 glnG nitrogen regulat 98.9 1.3E-09 2.9E-14 119.9 8.3 185 288-493 136-352 (469)
213 PF07726 AAA_3: ATPase family 98.9 1.3E-09 2.8E-14 96.6 5.9 107 313-450 1-130 (131)
214 PRK08699 DNA polymerase III su 98.9 9.4E-09 2E-13 107.2 13.0 154 296-468 7-183 (325)
215 PRK12377 putative replication 98.9 3.7E-09 8.1E-14 105.8 9.3 140 285-449 69-222 (248)
216 PF14532 Sigma54_activ_2: Sigm 98.9 7.6E-10 1.6E-14 101.2 4.0 130 293-458 1-137 (138)
217 KOG2680 DNA helicase TIP49, TB 98.9 2.2E-08 4.8E-13 99.4 14.5 111 383-515 289-407 (454)
218 KOG0736 Peroxisome assembly fa 98.9 1.8E-08 3.9E-13 111.0 15.0 178 291-496 402-597 (953)
219 PRK15115 response regulator Gl 98.9 4E-09 8.7E-14 115.3 9.0 198 291-515 135-365 (444)
220 PRK05917 DNA polymerase III su 98.9 1.8E-08 4E-13 102.4 13.1 138 297-457 4-154 (290)
221 KOG0478 DNA replication licens 98.9 4.3E-09 9.3E-14 114.4 8.5 256 291-570 430-734 (804)
222 PRK08116 hypothetical protein; 98.8 2E-08 4.4E-13 102.1 11.7 131 312-459 115-251 (268)
223 PF03215 Rad17: Rad17 cell cyc 98.8 2.5E-08 5.3E-13 109.8 12.8 221 277-515 6-269 (519)
224 PRK14700 recombination factor 98.8 1.5E-08 3.3E-13 102.2 9.4 127 416-553 1-159 (300)
225 PRK11361 acetoacetate metaboli 98.8 8E-09 1.7E-13 113.3 8.0 184 289-493 142-357 (457)
226 TIGR01818 ntrC nitrogen regula 98.8 1.2E-08 2.7E-13 112.1 8.9 182 290-492 134-347 (463)
227 PRK13406 bchD magnesium chelat 98.8 6.9E-08 1.5E-12 107.8 14.2 186 310-527 24-240 (584)
228 smart00382 AAA ATPases associa 98.8 4.1E-08 8.9E-13 87.9 10.1 121 311-450 2-139 (148)
229 PF02861 Clp_N: Clp amino term 98.8 1.2E-08 2.6E-13 76.9 5.1 51 96-146 1-53 (53)
230 PF13173 AAA_14: AAA domain 98.7 2E-08 4.4E-13 90.5 7.1 124 312-462 3-127 (128)
231 PRK08181 transposase; Validate 98.7 3.8E-08 8.2E-13 99.8 9.8 72 310-394 105-179 (269)
232 COG1241 MCM2 Predicted ATPase 98.7 1E-08 2.3E-13 114.5 6.2 254 288-562 284-594 (682)
233 PRK07952 DNA replication prote 98.7 3.3E-08 7.1E-13 98.8 9.1 103 283-394 65-174 (244)
234 PRK10365 transcriptional regul 98.7 4.5E-08 9.8E-13 106.8 9.2 182 291-493 140-353 (441)
235 PRK07276 DNA polymerase III su 98.7 1.9E-07 4.2E-12 95.3 12.5 145 294-466 6-171 (290)
236 COG3284 AcoR Transcriptional a 98.6 3.4E-08 7.3E-13 107.8 6.6 183 293-492 316-520 (606)
237 PF00493 MCM: MCM2/3/5 family 98.6 1.3E-09 2.8E-14 114.2 -4.2 244 291-562 25-328 (331)
238 PRK06526 transposase; Provisio 98.6 1.3E-07 2.8E-12 95.4 10.1 72 310-394 97-171 (254)
239 PF13401 AAA_22: AAA domain; P 98.6 8.1E-08 1.8E-12 86.3 7.8 109 310-432 3-125 (131)
240 KOG1970 Checkpoint RAD17-RFC c 98.6 4.4E-07 9.5E-12 97.2 14.3 212 276-513 68-319 (634)
241 COG1484 DnaC DNA replication p 98.6 8.2E-08 1.8E-12 96.8 8.2 109 310-439 104-217 (254)
242 PF12775 AAA_7: P-loop contain 98.6 2.3E-07 5E-12 94.5 11.3 148 302-474 25-197 (272)
243 PRK05818 DNA polymerase III su 98.6 1.5E-06 3.2E-11 86.9 16.2 123 310-457 6-147 (261)
244 PRK07132 DNA polymerase III su 98.6 4.5E-07 9.7E-12 93.4 12.8 146 297-467 3-159 (299)
245 PF02861 Clp_N: Clp amino term 98.6 7.2E-08 1.6E-12 72.7 5.1 52 182-233 1-52 (53)
246 KOG0480 DNA replication licens 98.6 1.8E-07 3.9E-12 101.4 10.0 245 288-561 343-644 (764)
247 KOG1051 Chaperone HSP104 and r 98.6 1.9E-07 4.2E-12 106.8 10.7 120 291-432 563-710 (898)
248 COG3283 TyrR Transcriptional r 98.6 6.3E-07 1.4E-11 91.3 13.2 180 287-492 201-412 (511)
249 PF01695 IstB_IS21: IstB-like 98.6 8E-08 1.7E-12 91.7 6.2 73 309-394 45-120 (178)
250 PRK06835 DNA replication prote 98.5 3.2E-07 6.9E-12 95.8 10.1 120 310-450 182-306 (329)
251 PRK09183 transposase/IS protei 98.5 4.2E-07 9E-12 92.1 9.1 74 309-394 100-176 (259)
252 KOG0741 AAA+-type ATPase [Post 98.5 8.9E-07 1.9E-11 94.2 11.4 138 312-467 539-683 (744)
253 PRK06921 hypothetical protein; 98.5 4.2E-07 9.1E-12 92.4 8.5 73 310-393 116-188 (266)
254 PHA00729 NTP-binding motif con 98.5 8.8E-07 1.9E-11 86.9 10.3 127 300-468 6-138 (226)
255 KOG1514 Origin recognition com 98.5 4.6E-06 1E-10 91.9 16.8 220 271-517 380-628 (767)
256 KOG2227 Pre-initiation complex 98.4 5.2E-06 1.1E-10 87.7 16.0 220 277-523 140-385 (529)
257 PF13191 AAA_16: AAA ATPase do 98.4 3.9E-07 8.4E-12 86.8 6.6 48 291-338 1-51 (185)
258 KOG2228 Origin recognition com 98.3 3.6E-06 7.8E-11 85.5 11.3 163 291-470 25-219 (408)
259 PF00931 NB-ARC: NB-ARC domain 98.3 2.5E-06 5.5E-11 87.4 10.5 174 295-496 1-195 (287)
260 PRK08939 primosomal protein Dn 98.3 8.9E-07 1.9E-11 91.7 7.0 72 310-394 155-229 (306)
261 KOG0482 DNA replication licens 98.3 1.6E-06 3.4E-11 91.8 8.8 240 290-560 342-638 (721)
262 COG3854 SpoIIIAA ncharacterize 98.3 4.2E-06 9.2E-11 80.8 10.4 116 300-434 126-254 (308)
263 PF05729 NACHT: NACHT domain 98.2 1.6E-05 3.5E-10 74.0 12.8 145 314-469 3-162 (166)
264 PRK15455 PrkA family serine pr 98.2 1.4E-05 3E-10 87.6 13.5 51 287-337 73-129 (644)
265 PRK06581 DNA polymerase III su 98.1 4E-05 8.6E-10 75.3 12.7 149 299-467 2-158 (263)
266 KOG0477 DNA replication licens 98.1 1.3E-05 2.8E-10 87.0 9.9 190 291-498 450-691 (854)
267 PF14516 AAA_35: AAA-like doma 98.1 8.9E-05 1.9E-09 77.9 15.3 180 292-496 13-232 (331)
268 COG1618 Predicted nucleotide k 98.0 5.3E-05 1.1E-09 69.6 10.8 27 312-338 6-32 (179)
269 TIGR02688 conserved hypothetic 98.0 3.9E-05 8.4E-10 81.5 11.1 84 309-422 207-291 (449)
270 PRK08485 DNA polymerase III su 98.0 0.0001 2.2E-09 70.5 12.6 123 371-516 42-181 (206)
271 KOG1968 Replication factor C, 98.0 7.4E-06 1.6E-10 94.7 5.2 203 277-513 307-535 (871)
272 PF07693 KAP_NTPase: KAP famil 97.9 0.00039 8.5E-09 72.6 16.8 86 381-475 171-268 (325)
273 COG3267 ExeA Type II secretory 97.9 0.00027 5.9E-09 69.8 14.3 177 298-496 39-238 (269)
274 PF08298 AAA_PrkA: PrkA AAA do 97.9 4.9E-05 1.1E-09 78.8 9.6 69 424-493 275-346 (358)
275 KOG2543 Origin recognition com 97.9 0.00017 3.6E-09 74.8 13.2 160 290-468 6-191 (438)
276 PRK10536 hypothetical protein; 97.9 0.00023 5E-09 71.2 13.0 46 288-335 53-98 (262)
277 PLN03210 Resistant to P. syrin 97.8 0.00045 9.8E-09 84.4 18.3 69 269-337 160-233 (1153)
278 PF12780 AAA_8: P-loop contain 97.8 7.6E-05 1.7E-09 75.8 9.7 167 292-473 10-213 (268)
279 cd01120 RecA-like_NTPases RecA 97.8 7.8E-05 1.7E-09 68.9 8.5 24 314-337 2-25 (165)
280 PF03266 NTPase_1: NTPase; In 97.8 1E-05 2.2E-10 76.4 2.4 134 313-461 1-162 (168)
281 KOG2170 ATPase of the AAA+ sup 97.8 3.5E-05 7.7E-10 77.3 6.2 112 292-420 84-203 (344)
282 PF10923 DUF2791: P-loop Domai 97.8 0.0014 3E-08 70.3 18.4 128 382-514 239-398 (416)
283 COG5271 MDN1 AAA ATPase contai 97.8 0.00014 3E-09 86.1 11.2 150 311-493 1543-1718(4600)
284 PF12774 AAA_6: Hydrolytic ATP 97.8 6.1E-05 1.3E-09 74.8 7.4 123 311-466 32-176 (231)
285 COG1373 Predicted ATPase (AAA+ 97.7 0.00017 3.6E-09 77.7 9.9 138 297-465 24-162 (398)
286 PTZ00202 tuzin; Provisional 97.6 0.0011 2.4E-08 70.6 14.8 161 286-474 258-438 (550)
287 PHA02774 E1; Provisional 97.6 0.0002 4.4E-09 78.8 9.1 38 298-335 420-458 (613)
288 PF06309 Torsin: Torsin; Inte 97.6 0.00029 6.4E-09 62.6 8.2 48 292-339 27-81 (127)
289 COG4650 RtcR Sigma54-dependent 97.5 9.4E-05 2E-09 73.8 4.5 152 294-463 188-365 (531)
290 PRK04841 transcriptional regul 97.5 0.0014 3.1E-08 78.1 15.2 178 285-497 9-219 (903)
291 COG0464 SpoVK ATPases of the A 97.5 0.0011 2.4E-08 73.7 12.9 166 306-497 13-185 (494)
292 cd01128 rho_factor Transcripti 97.4 0.00081 1.7E-08 67.6 10.2 29 309-337 14-42 (249)
293 PRK04296 thymidine kinase; Pro 97.4 0.00019 4.2E-09 69.2 5.5 24 314-337 5-28 (190)
294 PF13604 AAA_30: AAA domain; P 97.4 0.0011 2.5E-08 64.2 10.7 28 310-337 17-44 (196)
295 PRK09376 rho transcription ter 97.4 0.00045 9.7E-09 73.0 8.2 30 309-338 167-196 (416)
296 PF03969 AFG1_ATPase: AFG1-lik 97.4 0.00063 1.4E-08 72.1 8.7 128 310-457 61-201 (362)
297 PRK04132 replication factor C 97.3 0.00011 2.5E-09 84.9 2.7 49 278-326 7-55 (846)
298 PF00910 RNA_helicase: RNA hel 97.3 0.0004 8.6E-09 60.5 5.5 24 314-337 1-24 (107)
299 cd01124 KaiC KaiC is a circadi 97.3 0.0011 2.4E-08 63.3 8.9 24 314-337 2-25 (187)
300 COG4088 Predicted nucleotide k 97.3 0.0012 2.7E-08 63.1 8.8 25 314-338 4-28 (261)
301 PF13207 AAA_17: AAA domain; P 97.3 0.00025 5.4E-09 62.7 3.8 22 314-335 2-23 (121)
302 TIGR02858 spore_III_AA stage I 97.3 0.00089 1.9E-08 68.1 8.3 84 309-392 109-204 (270)
303 TIGR01618 phage_P_loop phage n 97.2 0.00046 9.9E-09 67.9 5.7 22 311-332 12-33 (220)
304 COG1067 LonB Predicted ATP-dep 97.2 0.0024 5.2E-08 72.1 11.8 229 281-521 95-383 (647)
305 PRK00131 aroK shikimate kinase 97.2 0.0089 1.9E-07 56.1 14.0 25 311-335 4-28 (175)
306 PRK13695 putative NTPase; Prov 97.2 0.0028 6.1E-08 60.0 10.4 25 313-337 2-26 (174)
307 PRK00625 shikimate kinase; Pro 97.2 0.0031 6.7E-08 59.9 10.4 23 313-335 2-24 (173)
308 PRK08118 topology modulation p 97.1 0.00087 1.9E-08 63.3 6.2 23 313-335 3-25 (167)
309 KOG0481 DNA replication licens 97.1 0.00079 1.7E-08 72.0 6.1 44 290-333 331-386 (729)
310 PF00437 T2SE: Type II/IV secr 97.1 0.0017 3.6E-08 66.2 8.5 117 288-431 102-230 (270)
311 PRK14974 cell division protein 97.1 0.0027 5.9E-08 66.6 10.0 28 311-338 140-167 (336)
312 cd00046 DEXDc DEAD-like helica 97.1 0.0023 5.1E-08 56.7 8.1 26 312-337 1-26 (144)
313 PRK13946 shikimate kinase; Pro 97.0 0.02 4.3E-07 54.8 14.3 26 310-335 9-34 (184)
314 PF02562 PhoH: PhoH-like prote 97.0 0.0026 5.7E-08 61.8 8.1 35 301-337 11-45 (205)
315 COG3899 Predicted ATPase [Gene 97.0 0.0055 1.2E-07 72.2 12.3 48 291-338 1-51 (849)
316 PF09848 DUF2075: Uncharacteri 97.0 0.00054 1.2E-08 72.7 3.6 23 313-335 3-25 (352)
317 PRK00771 signal recognition pa 96.9 0.011 2.4E-07 64.2 13.4 28 311-338 95-122 (437)
318 PRK14722 flhF flagellar biosyn 96.9 0.0039 8.6E-08 66.1 9.6 27 310-336 136-162 (374)
319 COG4619 ABC-type uncharacteriz 96.9 0.0028 6E-08 58.9 7.3 26 310-335 28-53 (223)
320 PF13671 AAA_33: AAA domain; P 96.9 0.0021 4.5E-08 58.4 6.6 22 314-335 2-23 (143)
321 PF01583 APS_kinase: Adenylyls 96.9 0.0027 6E-08 58.9 7.1 40 314-360 5-44 (156)
322 cd01129 PulE-GspE PulE/GspE Th 96.9 0.0023 5E-08 65.1 7.2 40 296-336 66-105 (264)
323 TIGR00767 rho transcription te 96.9 0.0021 4.5E-08 68.3 6.9 29 309-337 166-194 (415)
324 cd01121 Sms Sms (bacterial rad 96.9 0.0012 2.7E-08 70.2 5.2 78 312-396 83-172 (372)
325 COG0703 AroK Shikimate kinase 96.9 0.012 2.7E-07 55.2 11.2 25 311-335 2-26 (172)
326 cd01131 PilT Pilus retraction 96.9 0.0032 6.8E-08 61.2 7.6 25 313-337 3-27 (198)
327 PRK07261 topology modulation p 96.9 0.0019 4.2E-08 61.2 6.0 23 313-335 2-24 (171)
328 PF00448 SRP54: SRP54-type pro 96.8 0.004 8.6E-08 60.4 8.1 25 313-337 3-27 (196)
329 PRK06067 flagellar accessory p 96.8 0.0067 1.5E-07 60.4 9.8 26 310-335 24-49 (234)
330 TIGR01613 primase_Cterm phage/ 96.8 0.0068 1.5E-07 62.9 10.2 23 313-335 78-100 (304)
331 PRK08533 flagellar accessory p 96.8 0.0063 1.4E-07 60.6 9.5 27 310-336 23-49 (230)
332 COG5271 MDN1 AAA ATPase contai 96.8 0.011 2.4E-07 71.0 12.4 149 310-492 887-1060(4600)
333 TIGR02237 recomb_radB DNA repa 96.8 0.0037 8E-08 61.0 7.7 78 312-396 13-111 (209)
334 PRK06217 hypothetical protein; 96.8 0.0029 6.3E-08 60.5 6.6 23 313-335 3-25 (183)
335 COG2909 MalT ATP-dependent tra 96.8 0.0099 2.2E-07 67.7 11.5 129 284-432 13-169 (894)
336 PF06745 KaiC: KaiC; InterPro 96.8 0.0044 9.6E-08 61.3 8.1 27 309-335 17-43 (226)
337 PRK11823 DNA repair protein Ra 96.8 0.002 4.4E-08 70.4 6.1 79 311-396 80-170 (446)
338 PRK12608 transcription termina 96.8 0.0041 8.9E-08 65.6 8.1 41 298-338 119-160 (380)
339 PRK13947 shikimate kinase; Pro 96.7 0.0013 2.8E-08 62.0 3.6 24 312-335 2-25 (171)
340 PRK12723 flagellar biosynthesi 96.7 0.0077 1.7E-07 64.4 9.9 26 311-336 174-199 (388)
341 PF05272 VirE: Virulence-assoc 96.7 0.003 6.4E-08 61.3 6.1 99 313-456 54-169 (198)
342 COG0563 Adk Adenylate kinase a 96.7 0.0015 3.3E-08 62.2 3.9 23 313-335 2-24 (178)
343 PRK13949 shikimate kinase; Pro 96.7 0.0028 6E-08 60.0 5.6 24 312-335 2-25 (169)
344 PF05970 PIF1: PIF1-like helic 96.7 0.0022 4.7E-08 68.4 5.3 43 295-337 6-48 (364)
345 TIGR01313 therm_gnt_kin carboh 96.6 0.005 1.1E-07 57.5 6.8 22 314-335 1-22 (163)
346 cd03283 ABC_MutS-like MutS-lik 96.6 0.0041 9E-08 60.4 6.3 24 312-335 26-49 (199)
347 PRK05574 holA DNA polymerase I 96.6 0.16 3.5E-06 53.3 18.9 164 381-566 75-243 (340)
348 TIGR03574 selen_PSTK L-seryl-t 96.6 0.011 2.3E-07 59.6 9.5 24 314-337 2-25 (249)
349 cd00464 SK Shikimate kinase (S 96.6 0.002 4.4E-08 59.3 3.8 23 313-335 1-23 (154)
350 PRK13948 shikimate kinase; Pro 96.6 0.034 7.4E-07 53.2 12.3 26 310-335 9-34 (182)
351 cd01130 VirB11-like_ATPase Typ 96.6 0.0032 7E-08 60.4 5.3 27 310-336 24-50 (186)
352 PF05707 Zot: Zonular occluden 96.6 0.009 2E-07 57.7 8.4 60 382-450 79-138 (193)
353 cd03281 ABC_MSH5_euk MutS5 hom 96.6 0.013 2.9E-07 57.5 9.7 83 312-394 30-120 (213)
354 PRK03839 putative kinase; Prov 96.6 0.0019 4.1E-08 61.5 3.6 23 313-335 2-24 (180)
355 PF08433 KTI12: Chromatin asso 96.5 0.0017 3.7E-08 66.1 3.4 73 314-394 4-82 (270)
356 PF10236 DAP3: Mitochondrial r 96.5 0.054 1.2E-06 56.4 14.5 102 370-471 141-278 (309)
357 COG1102 Cmk Cytidylate kinase 96.5 0.0052 1.1E-07 56.7 5.9 22 314-335 3-24 (179)
358 cd00227 CPT Chloramphenicol (C 96.5 0.0047 1E-07 58.6 5.9 24 312-335 3-26 (175)
359 TIGR01420 pilT_fam pilus retra 96.5 0.0058 1.3E-07 64.6 7.1 28 309-336 120-147 (343)
360 KOG0058 Peptide exporter, ABC 96.5 0.0076 1.6E-07 67.7 8.1 40 381-428 621-660 (716)
361 PRK06547 hypothetical protein; 96.5 0.0031 6.7E-08 59.8 4.5 31 305-335 9-39 (172)
362 cd02020 CMPK Cytidine monophos 96.5 0.0065 1.4E-07 55.3 6.5 22 314-335 2-23 (147)
363 PRK09361 radB DNA repair and r 96.5 0.0086 1.9E-07 59.2 7.6 38 311-355 23-60 (225)
364 KOG3347 Predicted nucleotide k 96.4 0.0027 5.9E-08 57.7 3.5 27 309-335 5-31 (176)
365 cd03115 SRP The signal recogni 96.4 0.0069 1.5E-07 57.2 6.5 25 314-338 3-27 (173)
366 PRK13900 type IV secretion sys 96.4 0.0038 8.2E-08 65.6 5.1 29 309-337 158-186 (332)
367 COG0529 CysC Adenylylsulfate k 96.4 0.012 2.7E-07 55.1 7.9 42 312-360 24-65 (197)
368 PF13238 AAA_18: AAA domain; P 96.4 0.0021 4.6E-08 56.9 2.8 22 314-335 1-22 (129)
369 TIGR02525 plasmid_TraJ plasmid 96.4 0.013 2.7E-07 62.5 9.0 28 310-337 148-175 (372)
370 PRK05057 aroK shikimate kinase 96.4 0.0062 1.3E-07 57.7 6.1 25 311-335 4-28 (172)
371 PF13245 AAA_19: Part of AAA d 96.4 0.0037 8E-08 50.9 3.8 23 313-335 12-35 (76)
372 PF10443 RNA12: RNA12 protein; 96.4 0.11 2.3E-06 55.7 15.7 38 295-332 1-40 (431)
373 cd02027 APSK Adenosine 5'-phos 96.4 0.025 5.5E-07 52.2 9.8 23 314-336 2-24 (149)
374 TIGR01448 recD_rel helicase, p 96.4 0.0096 2.1E-07 69.0 8.4 26 312-337 339-364 (720)
375 cd03216 ABC_Carb_Monos_I This 96.3 0.0095 2.1E-07 55.9 6.8 26 310-335 25-50 (163)
376 PRK06762 hypothetical protein; 96.3 0.0099 2.1E-07 55.7 6.9 23 313-335 4-26 (166)
377 PHA02624 large T antigen; Prov 96.3 0.0094 2E-07 66.2 7.6 27 309-335 429-455 (647)
378 PRK14532 adenylate kinase; Pro 96.3 0.0031 6.8E-08 60.4 3.4 23 313-335 2-24 (188)
379 TIGR01128 holA DNA polymerase 96.3 0.1 2.2E-06 53.8 14.6 160 381-567 45-209 (302)
380 cd02021 GntK Gluconate kinase 96.2 0.004 8.8E-08 57.3 3.6 22 314-335 2-23 (150)
381 PRK05703 flhF flagellar biosyn 96.2 0.017 3.7E-07 62.8 8.8 26 311-336 221-246 (424)
382 PRK03846 adenylylsulfate kinas 96.2 0.022 4.7E-07 55.2 8.8 27 311-337 24-50 (198)
383 cd03222 ABC_RNaseL_inhibitor T 96.2 0.0079 1.7E-07 57.3 5.4 26 310-335 24-49 (177)
384 PF08303 tRNA_lig_kinase: tRNA 96.2 0.025 5.4E-07 52.6 8.4 133 317-475 5-148 (168)
385 PRK14530 adenylate kinase; Pro 96.2 0.0048 1E-07 60.6 4.1 25 311-335 3-27 (215)
386 cd01122 GP4d_helicase GP4d_hel 96.2 0.015 3.3E-07 59.1 7.9 28 310-337 29-56 (271)
387 PF01580 FtsK_SpoIIIE: FtsK/Sp 96.2 0.008 1.7E-07 58.5 5.6 42 311-355 38-79 (205)
388 PF01443 Viral_helicase1: Vira 96.2 0.0071 1.5E-07 59.8 5.3 21 314-334 1-21 (234)
389 TIGR01425 SRP54_euk signal rec 96.2 0.12 2.5E-06 56.1 14.7 27 312-338 101-127 (429)
390 cd03243 ABC_MutS_homologs The 96.2 0.0062 1.3E-07 59.2 4.7 23 312-334 30-52 (202)
391 TIGR00150 HI0065_YjeE ATPase, 96.1 0.0089 1.9E-07 54.0 5.2 40 297-336 6-47 (133)
392 COG2804 PulE Type II secretory 96.1 0.02 4.4E-07 62.1 8.8 101 288-394 236-339 (500)
393 PF03308 ArgK: ArgK protein; 96.1 0.039 8.4E-07 55.2 10.1 89 298-391 14-130 (266)
394 COG4178 ABC-type uncharacteriz 96.1 0.015 3.3E-07 64.8 8.1 28 309-336 417-444 (604)
395 PRK05986 cob(I)alamin adenolsy 96.1 0.07 1.5E-06 51.2 11.5 30 310-339 21-50 (191)
396 PRK14737 gmk guanylate kinase; 96.1 0.066 1.4E-06 51.4 11.6 24 312-335 5-28 (186)
397 KOG1808 AAA ATPase containing 96.1 0.014 3.1E-07 71.9 8.4 140 310-468 439-597 (1856)
398 TIGR02782 TrbB_P P-type conjug 96.1 0.025 5.4E-07 58.6 9.2 36 300-337 123-158 (299)
399 TIGR02768 TraA_Ti Ti-type conj 96.1 0.014 3.1E-07 67.9 8.1 26 312-337 369-394 (744)
400 TIGR01359 UMP_CMP_kin_fam UMP- 96.1 0.0049 1.1E-07 58.7 3.7 22 314-335 2-23 (183)
401 PRK10867 signal recognition pa 96.1 0.074 1.6E-06 57.8 13.0 76 313-394 102-195 (433)
402 cd03280 ABC_MutS2 MutS2 homolo 96.1 0.021 4.6E-07 55.4 8.1 21 313-333 30-50 (200)
403 smart00487 DEXDc DEAD-like hel 96.1 0.061 1.3E-06 50.6 11.1 24 312-335 25-49 (201)
404 TIGR02788 VirB11 P-type DNA tr 96.1 0.019 4E-07 59.8 8.1 28 309-336 142-169 (308)
405 PRK11889 flhF flagellar biosyn 96.1 0.014 3.1E-07 62.0 7.1 27 311-337 241-267 (436)
406 COG1485 Predicted ATPase [Gene 96.1 0.022 4.7E-07 59.1 8.3 26 310-335 64-89 (367)
407 PRK13833 conjugal transfer pro 96.1 0.019 4.2E-07 59.8 8.1 27 310-336 143-169 (323)
408 PRK07452 DNA polymerase III su 96.1 0.24 5.3E-06 51.8 16.5 218 313-569 3-231 (326)
409 cd01428 ADK Adenylate kinase ( 96.1 0.0056 1.2E-07 58.7 3.8 23 313-335 1-23 (194)
410 cd02019 NK Nucleoside/nucleoti 96.0 0.0053 1.1E-07 48.8 3.0 22 314-335 2-23 (69)
411 TIGR03499 FlhF flagellar biosy 96.0 0.012 2.6E-07 60.5 6.4 27 311-337 194-220 (282)
412 COG2805 PilT Tfp pilus assembl 96.0 0.041 8.9E-07 55.9 9.8 82 307-394 121-210 (353)
413 PRK13889 conjugal transfer rel 96.0 0.027 5.9E-07 66.8 10.0 73 313-394 364-445 (988)
414 PRK05541 adenylylsulfate kinas 96.0 0.025 5.5E-07 53.5 8.0 27 311-337 7-33 (176)
415 PRK09435 membrane ATPase/prote 96.0 0.037 8E-07 58.0 9.9 77 313-394 58-160 (332)
416 PRK13894 conjugal transfer ATP 96.0 0.021 4.5E-07 59.7 7.8 26 310-335 147-172 (319)
417 PRK13764 ATPase; Provisional 96.0 0.016 3.5E-07 65.1 7.4 28 310-337 256-283 (602)
418 PF01926 MMR_HSR1: 50S ribosom 96.0 0.012 2.6E-07 51.5 5.2 78 314-393 2-91 (116)
419 PRK06696 uridine kinase; Valid 96.0 0.018 3.9E-07 57.0 7.0 44 295-338 3-49 (223)
420 PRK13851 type IV secretion sys 96.0 0.0094 2E-07 62.8 5.2 38 298-336 150-187 (344)
421 cd03246 ABCC_Protease_Secretio 95.9 0.022 4.7E-07 53.9 7.2 26 310-335 27-52 (173)
422 PF13086 AAA_11: AAA domain; P 95.9 0.0065 1.4E-07 59.5 3.7 22 314-335 20-41 (236)
423 PRK14021 bifunctional shikimat 95.9 0.065 1.4E-06 60.2 12.0 33 311-353 6-38 (542)
424 PRK03731 aroL shikimate kinase 95.9 0.0074 1.6E-07 56.9 3.8 24 312-335 3-26 (171)
425 cd03114 ArgK-like The function 95.9 0.066 1.4E-06 49.4 10.0 24 314-337 2-25 (148)
426 cd03282 ABC_MSH4_euk MutS4 hom 95.9 0.02 4.4E-07 55.9 6.9 24 312-335 30-53 (204)
427 TIGR02524 dot_icm_DotB Dot/Icm 95.9 0.021 4.5E-07 60.6 7.6 27 310-336 133-159 (358)
428 cd01852 AIG1 AIG1 (avrRpt2-ind 95.9 0.013 2.9E-07 56.6 5.6 22 313-334 2-23 (196)
429 KOG0055 Multidrug/pheromone ex 95.9 0.022 4.9E-07 67.7 8.3 40 381-428 1143-1182(1228)
430 PF04665 Pox_A32: Poxvirus A32 95.9 0.084 1.8E-06 52.7 11.2 26 311-336 13-38 (241)
431 PRK00889 adenylylsulfate kinas 95.9 0.02 4.3E-07 54.2 6.6 26 312-337 5-30 (175)
432 TIGR03877 thermo_KaiC_1 KaiC d 95.8 0.044 9.6E-07 54.7 9.2 26 310-335 20-45 (237)
433 TIGR02533 type_II_gspE general 95.8 0.022 4.8E-07 63.0 7.6 48 288-336 220-267 (486)
434 cd00984 DnaB_C DnaB helicase C 95.8 0.016 3.6E-07 57.7 6.1 28 311-338 13-40 (242)
435 PRK05800 cobU adenosylcobinami 95.8 0.02 4.3E-07 54.2 6.3 23 313-335 3-25 (170)
436 TIGR03878 thermo_KaiC_2 KaiC d 95.8 0.031 6.7E-07 56.7 8.1 26 311-336 36-61 (259)
437 PLN02165 adenylate isopentenyl 95.8 0.013 2.7E-07 61.1 5.2 29 307-335 39-67 (334)
438 PRK08099 bifunctional DNA-bind 95.8 0.0074 1.6E-07 65.0 3.7 29 308-336 216-244 (399)
439 PRK14531 adenylate kinase; Pro 95.8 0.0067 1.4E-07 58.1 3.0 24 312-335 3-26 (183)
440 smart00534 MUTSac ATPase domai 95.8 0.04 8.7E-07 52.8 8.3 79 314-394 2-90 (185)
441 TIGR00750 lao LAO/AO transport 95.7 0.046 9.9E-07 56.7 9.1 28 310-337 33-60 (300)
442 PRK05629 hypothetical protein; 95.7 0.61 1.3E-05 48.7 17.7 114 443-570 112-226 (318)
443 PRK10263 DNA translocase FtsK; 95.7 0.056 1.2E-06 64.8 10.7 100 384-495 1142-1262(1355)
444 PTZ00088 adenylate kinase 1; P 95.7 0.0091 2E-07 59.4 3.7 23 313-335 8-30 (229)
445 cd01394 radB RadB. The archaea 95.7 0.043 9.3E-07 53.9 8.4 26 312-337 20-45 (218)
446 PRK14709 hypothetical protein; 95.7 0.056 1.2E-06 59.5 10.1 23 314-336 208-230 (469)
447 COG4608 AppF ABC-type oligopep 95.7 0.016 3.4E-07 58.2 5.2 28 309-336 37-64 (268)
448 TIGR01447 recD exodeoxyribonuc 95.7 0.033 7.2E-07 62.9 8.4 26 312-337 161-186 (586)
449 TIGR02538 type_IV_pilB type IV 95.7 0.022 4.8E-07 64.2 7.0 47 289-336 295-341 (564)
450 cd03230 ABC_DR_subfamily_A Thi 95.6 0.034 7.5E-07 52.5 7.3 26 310-335 25-50 (173)
451 COG1703 ArgK Putative periplas 95.6 0.066 1.4E-06 54.4 9.5 87 300-391 38-152 (323)
452 PRK10875 recD exonuclease V su 95.6 0.066 1.4E-06 60.8 10.6 27 311-337 167-193 (615)
453 PRK10436 hypothetical protein; 95.6 0.055 1.2E-06 59.3 9.7 49 288-337 196-244 (462)
454 PRK06585 holA DNA polymerase I 95.6 0.72 1.6E-05 48.6 18.0 216 311-569 20-243 (343)
455 cd00267 ABC_ATPase ABC (ATP-bi 95.6 0.033 7.2E-07 51.7 7.0 25 311-335 25-49 (157)
456 cd00561 CobA_CobO_BtuR ATP:cor 95.6 0.11 2.3E-06 48.6 10.3 27 313-339 4-30 (159)
457 PRK05537 bifunctional sulfate 95.6 0.04 8.6E-07 62.1 8.8 62 276-337 354-418 (568)
458 TIGR01360 aden_kin_iso1 adenyl 95.6 0.0081 1.8E-07 57.2 2.9 24 312-335 4-27 (188)
459 TIGR00174 miaA tRNA isopenteny 95.6 0.026 5.6E-07 57.9 6.7 22 314-335 2-23 (287)
460 PRK12727 flagellar biosynthesi 95.6 0.077 1.7E-06 58.6 10.6 27 311-337 350-376 (559)
461 cd03287 ABC_MSH3_euk MutS3 hom 95.6 0.034 7.4E-07 55.0 7.3 23 311-333 31-53 (222)
462 cd00544 CobU Adenosylcobinamid 95.6 0.05 1.1E-06 51.4 8.1 21 314-334 2-22 (169)
463 TIGR00416 sms DNA repair prote 95.6 0.023 4.9E-07 62.3 6.6 79 311-396 94-184 (454)
464 COG0194 Gmk Guanylate kinase [ 95.6 0.075 1.6E-06 50.5 9.1 24 312-335 5-28 (191)
465 cd01123 Rad51_DMC1_radA Rad51_ 95.6 0.031 6.7E-07 55.4 7.0 24 312-335 20-43 (235)
466 COG5192 BMS1 GTP-binding prote 95.6 0.024 5.2E-07 61.4 6.3 63 316-391 74-144 (1077)
467 TIGR00064 ftsY signal recognit 95.5 0.091 2E-06 53.7 10.4 26 312-337 73-98 (272)
468 COG1066 Sms Predicted ATP-depe 95.5 0.022 4.7E-07 60.2 5.8 78 313-398 95-184 (456)
469 TIGR02655 circ_KaiC circadian 95.5 0.018 3.8E-07 63.9 5.6 80 310-396 262-367 (484)
470 PF13479 AAA_24: AAA domain 95.5 0.012 2.6E-07 57.8 3.8 21 311-331 3-23 (213)
471 COG1936 Predicted nucleotide k 95.5 0.0093 2E-07 55.8 2.8 22 313-335 2-23 (180)
472 smart00072 GuKc Guanylate kina 95.5 0.049 1.1E-06 52.1 8.0 24 312-335 3-26 (184)
473 PRK14528 adenylate kinase; Pro 95.5 0.011 2.3E-07 56.8 3.4 24 312-335 2-25 (186)
474 PRK12724 flagellar biosynthesi 95.5 0.053 1.2E-06 58.3 8.8 23 313-335 225-247 (432)
475 TIGR00959 ffh signal recogniti 95.5 0.14 3E-06 55.6 12.1 25 312-336 100-124 (428)
476 cd00071 GMPK Guanosine monopho 95.5 0.018 3.9E-07 52.4 4.5 22 314-335 2-23 (137)
477 cd01125 repA Hexameric Replica 95.5 0.04 8.7E-07 55.0 7.5 25 314-338 4-28 (239)
478 PRK05973 replicative DNA helic 95.5 0.036 7.7E-07 55.3 6.9 27 311-337 64-90 (237)
479 PRK00091 miaA tRNA delta(2)-is 95.5 0.028 6.1E-07 58.3 6.4 23 313-335 6-28 (307)
480 TIGR02012 tigrfam_recA protein 95.5 0.03 6.4E-07 58.3 6.5 77 311-396 55-147 (321)
481 TIGR02322 phosphon_PhnN phosph 95.4 0.0099 2.1E-07 56.4 2.8 23 313-335 3-25 (179)
482 PF00406 ADK: Adenylate kinase 95.4 0.012 2.7E-07 54.2 3.3 20 316-335 1-20 (151)
483 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.4 0.05 1.1E-06 49.9 7.2 26 310-335 25-50 (144)
484 TIGR01069 mutS2 MutS2 family p 95.4 0.24 5.1E-06 58.0 14.4 23 312-334 323-345 (771)
485 PRK13826 Dtr system oriT relax 95.4 0.027 5.9E-07 67.3 6.7 27 311-337 397-423 (1102)
486 PRK08154 anaerobic benzoate ca 95.4 0.02 4.3E-07 59.7 5.0 25 311-335 133-157 (309)
487 cd03228 ABCC_MRP_Like The MRP 95.4 0.04 8.7E-07 52.0 6.7 26 310-335 27-52 (171)
488 KOG0479 DNA replication licens 95.4 0.047 1E-06 59.7 7.8 157 291-468 302-496 (818)
489 KOG0055 Multidrug/pheromone ex 95.4 0.039 8.4E-07 65.8 7.8 28 309-336 377-404 (1228)
490 PF10662 PduV-EutP: Ethanolami 95.4 0.019 4.2E-07 52.4 4.2 21 313-333 3-23 (143)
491 cd03238 ABC_UvrA The excision 95.4 0.059 1.3E-06 51.3 7.8 22 311-332 21-42 (176)
492 PHA01747 putative ATP-dependen 95.4 0.041 8.9E-07 57.4 7.0 24 310-333 189-212 (425)
493 TIGR00708 cobA cob(I)alamin ad 95.4 0.14 2.9E-06 48.5 10.0 28 312-339 6-33 (173)
494 PLN02199 shikimate kinase 95.3 0.035 7.6E-07 56.8 6.3 27 309-335 100-126 (303)
495 PLN02840 tRNA dimethylallyltra 95.3 0.034 7.3E-07 59.8 6.4 24 313-336 23-46 (421)
496 TIGR00455 apsK adenylylsulfate 95.3 0.074 1.6E-06 50.7 8.3 27 311-337 18-44 (184)
497 COG5245 DYN1 Dynein, heavy cha 95.3 0.032 6.9E-07 66.7 6.6 80 383-469 1564-1657(3164)
498 PRK04040 adenylate kinase; Pro 95.3 0.012 2.6E-07 56.6 2.8 23 313-335 4-26 (188)
499 cd03284 ABC_MutS1 MutS1 homolo 95.3 0.042 9.2E-07 54.1 6.7 23 312-334 31-53 (216)
500 PF07931 CPT: Chloramphenicol 95.3 0.094 2E-06 49.8 8.7 35 314-358 4-38 (174)
No 1
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-70 Score=606.93 Aligned_cols=435 Identities=45% Similarity=0.658 Sum_probs=386.6
Q ss_pred HhhHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHhhcCCCcHHHHHHCCCCHHHHHHHHHHHhhcCCCCCCchhhccCCCC
Q 007723 84 RFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAVVSIWHSTNNQDTDDAAAQGKPF 163 (591)
Q Consensus 84 ~fT~~a~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~L~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (591)
+||++++++|..|+.+|+.++|.+|++||||++|+.++.+..+|..+|++++.++..+...+.+.+..
T Consensus 1 ~~~~~~~~~l~~a~~~a~~~~h~~~~~eHll~~ll~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~------------ 68 (786)
T COG0542 1 KLTERAQKALELAQELARMRRHEYVTPEHLLLALLDQPKGDELLNLCGIDLDKLRQELEEFIDKLPKV------------ 68 (786)
T ss_pred CcCHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHcCCchHHHHHHcCCCHHHHHHHHHHHHhccCCC------------
Confidence 48999999999999999999999999999999999998888999999999999999999999988653
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhhhcccchhhHHHHHhCCCHHHHHHHHHHHhhhhhhccCCC
Q 007723 164 SSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGRE 243 (591)
Q Consensus 164 ~~~~~~~~S~~~k~vL~~A~~~A~~~g~~~I~~ehLLlall~~~~~~a~~iL~~~gv~~~~l~~~i~~~l~~~~~~~~~~ 243 (591)
... +.+|+.++++++.|..+|+.+|+.||+++|||+|++.++++.+.++|...|++...+.+ +...+.+....
T Consensus 69 -~~~-~~~s~~~~~~~~~a~~~a~~~~~~~v~~~~llla~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~---- 141 (786)
T COG0542 69 -LGS-PYLSPRLKRVLERAWLLAQSLGDEYVSTEHLLLALLNEPESVAAYILKKLGVTRKDVEE-LIEELRGGNEV---- 141 (786)
T ss_pred -CCC-CCCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhcccchHHHHHHHhccCCHHHHHH-HHHHHhccccc----
Confidence 112 77899999999999999999999999999999999999999999999999999988744 44433221100
Q ss_pred CcccccccccccccccccCCCCCCCCchHHHhhchhcccccccCCCCccCCcHHHHHHHHHHHHhcCCCCCeEecCCCCc
Q 007723 244 PSLAKGVRENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVG 323 (591)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~r~~~~~~vvG~~~~i~~l~~~L~~~~~~~ilL~GppGvG 323 (591)
.+.........|++|+.|||+.+|.+++||+|||++||++++++|+|+++||++|+|+||||
T Consensus 142 ------------------~~~~~~~~~~~L~~y~~dlt~~Ar~gklDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVG 203 (786)
T COG0542 142 ------------------DSKNAEEDQDALEKYTRDLTELAREGKLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVG 203 (786)
T ss_pred ------------------CCcccccchhhHHHHhhhhHHHHhcCCCCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCC
Confidence 01112334478999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCC
Q 007723 324 KTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRG 403 (591)
Q Consensus 324 KT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~ 403 (591)
||+++++||+++.++++|..+.+++++.+|++.+++|++|+|+||++++.+++++.+.++.||||||+|.++|+|++..
T Consensus 204 KTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G- 282 (786)
T COG0542 204 KTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEG- 282 (786)
T ss_pred HHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccc-
Confidence 9999999999999999999999999999999999999999999999999999999998899999999999999987621
Q ss_pred CCCccHHHHHhhcccccCCcEEEEecCChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcH
Q 007723 404 NKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTL 483 (591)
Q Consensus 404 ~~~~~~~~~n~L~~~le~g~v~lI~att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~ 483 (591)
+ ..|+.|+|+|.|++|+++||||||.+||++++++|++|.|||+.|.+.+|+.++...||+++..+|+.||++.|+|
T Consensus 283 --~-a~DAaNiLKPaLARGeL~~IGATT~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D 359 (786)
T COG0542 283 --G-AMDAANLLKPALARGELRCIGATTLDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLKERYEAHHGVRITD 359 (786)
T ss_pred --c-ccchhhhhHHHHhcCCeEEEEeccHHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHHHHHHHccCceecH
Confidence 2 5899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHhhhcCCCcHHHHHHHHHHhhHhhhhhhccchhhhhhhhcCChHHHHHHHHHHhhcchHHHHhhchhhH
Q 007723 484 EAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKYDD 563 (591)
Q Consensus 484 ~al~~l~~~s~r~i~~~~lp~~ai~lld~a~a~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~d~~~a~~~~~~~ 563 (591)
+++.+++.+|.||+++|++|||||||+|+||++.++... .|.+ +..+...+.+...++......+| +++.++.+..
T Consensus 360 ~Al~aAv~LS~RYI~dR~LPDKAIDLiDeA~a~~~l~~~-~p~~--l~~~~~~~~~l~~e~~~~~~e~~-~~~k~~~~~~ 435 (786)
T COG0542 360 EALVAAVTLSDRYIPDRFLPDKAIDLLDEAGARVRLEID-KPEE--LDELERELAQLEIEKEALEREQD-EKEKKLIDEI 435 (786)
T ss_pred HHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHhccc-CCcc--hhHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHH
Confidence 999999999999999999999999999999999999887 7765 44444444444455555555555 4444555443
No 2
>CHL00095 clpC Clp protease ATP binding subunit
Probab=100.00 E-value=2.2e-62 Score=566.31 Aligned_cols=442 Identities=45% Similarity=0.723 Sum_probs=388.9
Q ss_pred hHHHhhHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHhhcCCCc--HHHHHHCCCCHHHHHHHHHHHhhcCCCCCCchhhc
Q 007723 81 VFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAREAVVSIWHSTNNQDTDDAAA 158 (591)
Q Consensus 81 ~~~~fT~~a~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~--~~~L~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~ 158 (591)
||++||++++++|..|+.+|++++|.+|+|||||+|||.++++ ..+|..+|++++.++..+...+++.+.
T Consensus 1 m~~rfT~~a~~vL~~A~~~A~~~~h~~V~~EHLLLaLL~~~~~~a~~iL~~~gid~~~l~~~l~~~l~~~~~-------- 72 (821)
T CHL00095 1 MFERFTEKAIKVIMLSQEEARRLGHNFVGTEQILLGLIGEGTGIAARALKSMGVTLKDARIEVEKIIGRGTG-------- 72 (821)
T ss_pred ChhhHhHHHHHHHHHHHHHHHHhCCCcCcHHHHHHHHHhCCCchHHHHHHHcCCCHHHHHHHHHHHHhcCCC--------
Confidence 7899999999999999999999999999999999999998876 789999999999999999998876432
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhhhcccchhhHHHHHhCCCHHHHHHHHHHHhhhhhh
Q 007723 159 QGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELA 238 (591)
Q Consensus 159 ~~~~~~~~~~~~~S~~~k~vL~~A~~~A~~~g~~~I~~ehLLlall~~~~~~a~~iL~~~gv~~~~l~~~i~~~l~~~~~ 238 (591)
.....++||+.++++|+.|..+|..+++.+|+++|||+||+.++++.+.++|..+|++...+...+...+...
T Consensus 73 -----~~~~~~~~S~~~~~vL~~A~~~A~~~~~~~I~~eHLLlALL~~~ds~a~~iL~~~gvd~~~L~~~l~~~l~~~-- 145 (821)
T CHL00095 73 -----FVAVEIPFTPRAKRVLEMSLEEARDLGHNYIGTEHLLLALLEEGEGVAARVLENLGVDLSKIRSLILNLIGEI-- 145 (821)
T ss_pred -----CCccccccCHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHhCCCchHHHHHHHcCCCHHHHHHHHHHHhccc--
Confidence 1224688999999999999999999999999999999999999888899999999999999888766544211
Q ss_pred ccCCCCcccccccccccccccccCCCCCCCCchHHHhhchhcccccccCCCCccCCcHHHHHHHHHHHHhcCCCCCeEec
Q 007723 239 KEGREPSLAKGVRENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318 (591)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~r~~~~~~vvG~~~~i~~l~~~L~~~~~~~ilL~G 318 (591)
+.. ...+. ......+.|++|++||+++++++++++++||++++++++++|+++.++|++|+|
T Consensus 146 ----~e~--------~~~~~------~~~~~~~~l~~~~~~l~~~a~~~~~~~~igr~~ei~~~~~~L~r~~~~n~lL~G 207 (821)
T CHL00095 146 ----IEA--------ILGAE------QSRSKTPTLEEFGTNLTKEAIDGNLDPVIGREKEIERVIQILGRRTKNNPILIG 207 (821)
T ss_pred ----ccc--------ccccc------cccccchHHHHHHHHHHHHHHcCCCCCCCCcHHHHHHHHHHHcccccCCeEEEC
Confidence 000 00000 011234689999999999999999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCC
Q 007723 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSG 398 (591)
Q Consensus 319 ppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~ 398 (591)
|||||||++|+++|+.+..+++|..+.+++++.+|++.+++|.+++|+|+++++.+++++...++.||||||+|.|++.|
T Consensus 208 ~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g 287 (821)
T CHL00095 208 EPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAG 287 (821)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999987788999999999999876
Q ss_pred CCCCCCCCccHHHHHhhcccccCCcEEEEecCChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHhhcC
Q 007723 399 TVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHN 478 (591)
Q Consensus 399 ~~~~~~~~~~~~~~n~L~~~le~g~v~lI~att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~~ 478 (591)
.. .+..++.|+|++.+++|.++|||+||+++|+++++.|++|.+||+.|.+.+|+.++...|++.+...|+.+|+
T Consensus 288 ~~-----~g~~~~a~lLkp~l~rg~l~~IgaTt~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l~~~~e~~~~ 362 (821)
T CHL00095 288 AA-----EGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGLRSRYEKHHN 362 (821)
T ss_pred CC-----CCcccHHHHhHHHHhCCCcEEEEeCCHHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHHHHHHHHHcC
Confidence 53 2356889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHhHHhhhcCCCcHHHHHHHHHHhhHhhhhhhccchhhhhhhhcCChHHHHHHHHHHhhcchHHHHhh
Q 007723 479 CKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558 (591)
Q Consensus 479 i~i~~~al~~l~~~s~r~i~~~~lp~~ai~lld~a~a~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~d~~~a~~ 558 (591)
+.++++++..++.++.+|++++++|+|||++||+||+++++.....|.+ +..+.+.+.+...++...+..++++++.+
T Consensus 363 v~i~deal~~i~~ls~~yi~~r~lPdkaidlld~a~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (821)
T CHL00095 363 LSISDKALEAAAKLSDQYIADRFLPDKAIDLLDEAGSRVRLINSRLPPA--ARELDKELREILKDKDEAIREQDFETAKQ 440 (821)
T ss_pred CCCCHHHHHHHHHHhhccCccccCchHHHHHHHHHHHHHHhhccCCchh--HHHHHHHHHHHHHHHHHHHhCcchHHHHH
Confidence 9999999999999999999999999999999999999999987666654 33455455555556666667777777776
Q ss_pred chhh
Q 007723 559 LKYD 562 (591)
Q Consensus 559 ~~~~ 562 (591)
++++
T Consensus 441 ~~~~ 444 (821)
T CHL00095 441 LRDR 444 (821)
T ss_pred HHHH
Confidence 6554
No 3
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=100.00 E-value=5.7e-60 Score=543.61 Aligned_cols=413 Identities=38% Similarity=0.541 Sum_probs=357.7
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHhhcCCCc--HHHHHHCCCCHHHHHHHHHHHhhcCCCCCCchhhccCCC
Q 007723 85 FTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAREAVVSIWHSTNNQDTDDAAAQGKP 162 (591)
Q Consensus 85 fT~~a~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~--~~~L~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (591)
+|++++++|..|+.+|+.++|.+|+|||||+|||.++++ ..+|..+|++++.++.++...+...+..
T Consensus 1 Lt~~a~~~L~~A~~~A~~~~h~~I~~eHLLlaLL~~~~~~~~~iL~~~Gvd~~~Lr~~le~~l~~~p~~----------- 69 (852)
T TIGR03345 1 LNPTSRRALEQAAALCVARGHPEVELEHWLLALLDQPDSDLAAILRHFGVDLGRLKADLARALDKLPRG----------- 69 (852)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHhccCcHHHHHHHHcCCCHHHHHHHHHHHhccCCCC-----------
Confidence 589999999999999999999999999999999998766 6799999999999999999988765421
Q ss_pred CCCCCCCCCCHHHHHHHHHHHH-HHHHcCCCcCCHHHHHHHhhhcccc--hhhHHHHHh-CCCHHHHHHHHHHHhhhhhh
Q 007723 163 FSSAAKMPFSISTKRVFEAAVE-YSRSRGYNFIAPEHIALGLFTVDDG--SAGRVLKRL-GVDVNHLAAVAVSRLQGELA 238 (591)
Q Consensus 163 ~~~~~~~~~S~~~k~vL~~A~~-~A~~~g~~~I~~ehLLlall~~~~~--~a~~iL~~~-gv~~~~l~~~i~~~l~~~~~ 238 (591)
....+++|+.++++|+.|.. .+..+|+.+|+++|||+||++++++ .+..++..+ |++.+.+.+.+....++.
T Consensus 70 --~~~~~~~S~~l~~vL~~A~~~~a~~~g~~~I~teHLLlALl~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 145 (852)
T TIGR03345 70 --NTRTPVFSPHLVELLQEAWLLASLELGDGRIRSGHLLLALLTDPELRRLLGSISPELAKIDREALREALPALVEGS-- 145 (852)
T ss_pred --CCCCCCcCHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHccccchhHHHHHHHHHhCCCHHHHHHHHHHHhcCC--
Confidence 12357899999999999997 5667999999999999999988765 566788887 999988877665422211
Q ss_pred ccCCCCcccccccccccccccccCCCCCCCCchHHHhhchhcccccccCCCCccCCcHHHHHHHHHHHHhcCCCCCeEec
Q 007723 239 KEGREPSLAKGVRENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLG 318 (591)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~r~~~~~~vvG~~~~i~~l~~~L~~~~~~~ilL~G 318 (591)
........ +... ..........+.|++|++||++++|+++++++|||++++++++++|+++.++|++|+|
T Consensus 146 ~~~~~~~~---------~~~~-~~~~~~~~~~~~l~~~~~~L~~~~r~~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG 215 (852)
T TIGR03345 146 AEASAAAA---------DAGP-AAAAAGAAGTSALDQYTTDLTAQAREGKIDPVLGRDDEIRQMIDILLRRRQNNPILTG 215 (852)
T ss_pred cccccccc---------cccc-ccccccccchhhHHHHhhhHHHHhcCCCCCcccCCHHHHHHHHHHHhcCCcCceeEEC
Confidence 00000000 0000 0000111234689999999999999999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhccccccchHHHHHHHHHHHHHh-cCCeEEEEcCcchhhcC
Q 007723 319 ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK-SGDVILFIDEVHTLIGS 397 (591)
Q Consensus 319 ppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~~-~~~~ILfIDEi~~L~~~ 397 (591)
|||||||++|++||+.+..+.+|..+.+.+++.++++.+.+|.+++|+|+++++.+++++.. ..++||||||+|.|+++
T Consensus 216 ~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~ 295 (852)
T TIGR03345 216 EAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGA 295 (852)
T ss_pred CCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999975 46899999999999887
Q ss_pred CCCCCCCCCccHHHHHhhcccccCCcEEEEecCChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHhhc
Q 007723 398 GTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHH 477 (591)
Q Consensus 398 ~~~~~~~~~~~~~~~n~L~~~le~g~v~lI~att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~ 477 (591)
|.. .++.++.|+|++.+++|.++||||||+++|++++++|++|.|||+.|.|.+|+.+++..||+.+...|+.+|
T Consensus 296 g~~-----~~~~d~~n~Lkp~l~~G~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~ 370 (852)
T TIGR03345 296 GGQ-----AGQGDAANLLKPALARGELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHH 370 (852)
T ss_pred CCc-----cccccHHHHhhHHhhCCCeEEEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcC
Confidence 653 235678899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHhHHhhhcCCCcHHHHHHHHHHhhHhhhhhhccchh
Q 007723 478 NCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKE 527 (591)
Q Consensus 478 ~i~i~~~al~~l~~~s~r~i~~~~lp~~ai~lld~a~a~~~~~~~~~~~~ 527 (591)
++.|+++++..++.++.||++++++|||||||||+||++.++.....+.+
T Consensus 371 ~v~i~d~al~~~~~ls~ryi~~r~LPDKAIdlldea~a~~~~~~~~~p~~ 420 (852)
T TIGR03345 371 GVLILDEAVVAAVELSHRYIPGRQLPDKAVSLLDTACARVALSQNATPAA 420 (852)
T ss_pred CCeeCHHHHHHHHHHcccccccccCccHHHHHHHHHHHHHHHhccCCchh
Confidence 99999999999999999999999999999999999999999877666654
No 4
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=100.00 E-value=3.9e-60 Score=541.99 Aligned_cols=409 Identities=42% Similarity=0.652 Sum_probs=359.0
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHhhcCCCcHHHHHHCCCCHHHHHHHHHHHhhc-CCCCCCchhhccCCCC
Q 007723 85 FTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAVVSIWHS-TNNQDTDDAAAQGKPF 163 (591)
Q Consensus 85 fT~~a~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~L~~~gi~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~ 163 (591)
||++++++|..|+.+|++++|.+|++||||+|||.++++..+|+.+|++++.+++.+...++. .+.. +.
T Consensus 1 ~~~~a~~~L~~A~~~A~~~~h~~V~~EHLLlaLL~~~~~~~iL~~~gid~~~l~~~l~~~l~~~~p~~----------~~ 70 (731)
T TIGR02639 1 ISEELERILDAALEEAKKRRHEFVTLEHILLALLFDSDAIEILEECGGDVEALRKDLEDYLENNLPSI----------TE 70 (731)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCcCcHHHHHHHHHcCchHHHHHHHcCCCHHHHHHHHHHHHhhcCCCC----------CC
Confidence 689999999999999999999999999999999998877889999999999999999998873 3221 01
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhhhcccchhhHHHHHhCCCHHHHHHHHHHHhhhhhhccCCC
Q 007723 164 SSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGRE 243 (591)
Q Consensus 164 ~~~~~~~~S~~~k~vL~~A~~~A~~~g~~~I~~ehLLlall~~~~~~a~~iL~~~gv~~~~l~~~i~~~l~~~~~~~~~~ 243 (591)
..+..++||+.++++|+.|..+|..+|+.+|+++|||+||++++++.+.++|..+|++.+.+.+.+..... ..+ .
T Consensus 71 ~~~~~~~~S~~lk~vL~~A~~~A~~~g~~~I~teHLLLALl~~~~~~a~~lL~~~gi~~~~l~~~l~~~~~----~~~-~ 145 (731)
T TIGR02639 71 ENEADPEQTVGVQRVLQRALLHVKSAGKKEIGIGDILVALFDEEDSHASYFLKSQGITRLDILEYISHGIP----KDD-G 145 (731)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHhcCcccHHHHHHHHcCCCHHHHHHHHHhhcc----ccc-c
Confidence 11246889999999999999999999999999999999999998899999999999999888776542110 000 0
Q ss_pred CcccccccccccccccccCCCCCCCCchHHHhhchhcccccccCCCCccCCcHHHHHHHHHHHHhcCCCCCeEecCCCCc
Q 007723 244 PSLAKGVRENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVG 323 (591)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~r~~~~~~vvG~~~~i~~l~~~L~~~~~~~ilL~GppGvG 323 (591)
.. . .... ..........+.|++||.||++++|++++++++||++++++++++|+++.++|++|+||||||
T Consensus 146 ~~-~-------~~~~--~~~~~~~~~~~~l~~~~~~l~~~~r~~~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~G 215 (731)
T TIGR02639 146 KN-R-------DAEE--AGKEEAKKQEDALEKYTVDLTEKAKNGKIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVG 215 (731)
T ss_pred cc-c-------cccc--ccccccccchhHHHHHhhhHHHHHhcCCCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCC
Confidence 00 0 0000 000001123468999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCC
Q 007723 324 KTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRG 403 (591)
Q Consensus 324 KT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~ 403 (591)
||++++++|+.+..+.+|..+.+++++.+|++.+++|.+++|+++++++.+++++....+.||||||+|.|+++|..+
T Consensus 216 KT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~-- 293 (731)
T TIGR02639 216 KTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATS-- 293 (731)
T ss_pred HHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCC--
Confidence 999999999999999999999999999999999999999999999999999999987778999999999999876542
Q ss_pred CCCccHHHHHhhcccccCCcEEEEecCChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcH
Q 007723 404 NKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTL 483 (591)
Q Consensus 404 ~~~~~~~~~n~L~~~le~g~v~lI~att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~ 483 (591)
+++.++++.|++.+++|.++|||+||+.+|+++++.|++|.|||+.|.+.+|+.+++.+||+.+..+|+.+|++.|++
T Consensus 294 --~~~~~~~~~L~~~l~~g~i~~IgaTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~ 371 (731)
T TIGR02639 294 --GGSMDASNLLKPALSSGKLRCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLKEKYEEFHHVKYSD 371 (731)
T ss_pred --CccHHHHHHHHHHHhCCCeEEEEecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHHHHHHhccCcccCH
Confidence 335788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHhhhcCCCcHHHHHHHHHHhhHhhhhhh
Q 007723 484 EAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELF 522 (591)
Q Consensus 484 ~al~~l~~~s~r~i~~~~lp~~ai~lld~a~a~~~~~~~ 522 (591)
+++++++.++.+|++++++|+|||+|+|+|++..++...
T Consensus 372 ~al~~~~~ls~ryi~~r~~P~kai~lld~a~a~~~~~~~ 410 (731)
T TIGR02639 372 EALEAAVELSARYINDRFLPDKAIDVIDEAGASFRLRPK 410 (731)
T ss_pred HHHHHHHHhhhcccccccCCHHHHHHHHHhhhhhhcCcc
Confidence 999999999999999999999999999999998877543
No 5
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=100.00 E-value=2.3e-59 Score=542.57 Aligned_cols=403 Identities=44% Similarity=0.700 Sum_probs=360.7
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHhhcCCCc--HHHHHHCCCCHHHHHHHHHHHhhcCCCCCCchhhccCCC
Q 007723 85 FTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAREAVVSIWHSTNNQDTDDAAAQGKP 162 (591)
Q Consensus 85 fT~~a~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~--~~~L~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (591)
||+.++++|..|+.+|++++|.+|+|||||+||+.++++ ..+|..+|+|++.+++++...+++.+..
T Consensus 1 fT~~a~~vL~~A~~~A~~~~h~~V~~EHLLlaLl~~~~g~a~~iL~~~Gvd~~~l~~~l~~~l~~~~~~----------- 69 (852)
T TIGR03346 1 FTEKFQEALQAAQSLALGRDHQQIEPEHLLKALLDQEGGLARRLLQKAGVNVGALRQALEKELEKLPKV----------- 69 (852)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhCCccHHHHHHHHcCCCHHHHHHHHHHHhcccccC-----------
Confidence 799999999999999999999999999999999998876 7899999999999999999998875431
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhhhcccchhhHHHHHhCCCHHHHHHHHHHHhhhhhhccCC
Q 007723 163 FSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGR 242 (591)
Q Consensus 163 ~~~~~~~~~S~~~k~vL~~A~~~A~~~g~~~I~~ehLLlall~~~~~~a~~iL~~~gv~~~~l~~~i~~~l~~~~~~~~~ 242 (591)
.+.+..++||+.++++|+.|..+|..+|+.+|+++|||+||++++++ +.++|..+|++...+++.+.....+.
T Consensus 70 ~~~~~~~~~S~~~~~vLe~A~~~A~~~g~~~I~teHLLlALl~e~~~-a~~iL~~~gi~~~~l~~~l~~~~~~~------ 142 (852)
T TIGR03346 70 SGPGGQVYLSPELNRLLNLAEKLAQKRGDEFISSEHLLLALLDDKGT-LGKLLKEAGATADALEAAINAVRGGQ------ 142 (852)
T ss_pred CCCCCCCCcCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHcCCcc-HHHHHHHcCCCHHHHHHHHHhhccCc------
Confidence 11124688999999999999999999999999999999999998776 67899999999988877654321100
Q ss_pred CCcccccccccccccccccCCCCCCCCchHHHhhchhcccccccCCCCccCCcHHHHHHHHHHHHhcCCCCCeEecCCCC
Q 007723 243 EPSLAKGVRENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGV 322 (591)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~r~~~~~~vvG~~~~i~~l~~~L~~~~~~~ilL~GppGv 322 (591)
. ..+ ...+...+.|++||+||+++++++.+++++||++++++++++|+++.++|++|+|||||
T Consensus 143 ~-----------~~~------~~~~~~~~~l~~~~~~l~~~~~~~~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGv 205 (852)
T TIGR03346 143 K-----------VTS------ANAEDQYEALEKYARDLTERAREGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGV 205 (852)
T ss_pred c-----------ccc------cccccchhHHHHHhhhHHHHhhCCCCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCC
Confidence 0 000 00122346899999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhccccccchHHHHHHHHHHHHHhc-CCeEEEEcCcchhhcCCCCC
Q 007723 323 GKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVG 401 (591)
Q Consensus 323 GKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~~~-~~~ILfIDEi~~L~~~~~~~ 401 (591)
|||++++++++.+..+.+|..+.+.+++.++++.+++|.+++|+++.+++.+++++.+. ++.||||||+|.|+++|..
T Consensus 206 GKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~- 284 (852)
T TIGR03346 206 GKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKA- 284 (852)
T ss_pred CHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCC-
Confidence 99999999999999999999999999999999999999999999999999999998654 5899999999999877654
Q ss_pred CCCCCccHHHHHhhcccccCCcEEEEecCChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHhhcCCCC
Q 007723 402 RGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKF 481 (591)
Q Consensus 402 ~~~~~~~~~~~n~L~~~le~g~v~lI~att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i 481 (591)
.++.+++|+|++.+++|.+.|||+||.++|++++++|++|.|||+.|.+++|+.+++..||+.+..+|+.+|++.+
T Consensus 285 ----~~~~d~~~~Lk~~l~~g~i~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~ 360 (852)
T TIGR03346 285 ----EGAMDAGNMLKPALARGELHCIGATTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLKERYEVHHGVRI 360 (852)
T ss_pred ----cchhHHHHHhchhhhcCceEEEEeCcHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHhccccCCCC
Confidence 3357889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHhHHhhhcCCCcHHHHHHHHHHhhHhhhhhhccchh
Q 007723 482 TLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKE 527 (591)
Q Consensus 482 ~~~al~~l~~~s~r~i~~~~lp~~ai~lld~a~a~~~~~~~~~~~~ 527 (591)
+++++..++.++.+|++++++|||||+|||+||+++++.....|.+
T Consensus 361 ~d~~i~~~~~ls~~yi~~r~lPdkAidlld~a~a~~~~~~~~~~~~ 406 (852)
T TIGR03346 361 TDPAIVAAATLSHRYITDRFLPDKAIDLIDEAAARIRMEIDSKPEE 406 (852)
T ss_pred CHHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHhhccCCchh
Confidence 9999999999999999999999999999999999999887666654
No 6
>PRK10865 protein disaggregation chaperone; Provisional
Probab=100.00 E-value=3.2e-58 Score=530.78 Aligned_cols=408 Identities=40% Similarity=0.628 Sum_probs=362.8
Q ss_pred chHHHhhHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHhhcCCCc--HHHHHHCCCCHHHHHHHHHHHhhcCCCCCCchhh
Q 007723 80 SVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAREAVVSIWHSTNNQDTDDAA 157 (591)
Q Consensus 80 ~~~~~fT~~a~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~--~~~L~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~ 157 (591)
||+++||+.++++|..|+.+|++++|.+|++||||++|+.++.+ ..+|..+|+|++.+++++...++..+..
T Consensus 1 ~~~~~~~~~~~~~l~~a~~~a~~~~~~~~~~~hll~~l~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~------ 74 (857)
T PRK10865 1 MRLDRLTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSVRPLLTSAGINAGQLRTDINQALSRLPQV------ 74 (857)
T ss_pred CChHHhCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhCCccHHHHHHHHcCCCHHHHHHHHHHHHhhCCCC------
Confidence 46889999999999999999999999999999999999998876 7799999999999999999998875431
Q ss_pred ccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhhhcccchhhHHHHHhCCCHHHHHHHHHHHhhhhh
Q 007723 158 AQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGEL 237 (591)
Q Consensus 158 ~~~~~~~~~~~~~~S~~~k~vL~~A~~~A~~~g~~~I~~ehLLlall~~~~~~a~~iL~~~gv~~~~l~~~i~~~l~~~~ 237 (591)
.+....+++|+.++++|+.|..++..+|+.+|+++|||+|++.++++ .+.+|..+|++.+.+.+.+....++.
T Consensus 75 -----~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~i~~~~ll~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~- 147 (857)
T PRK10865 75 -----EGTGGDVQPSQDLVRVLNLCDKLAQKRGDNFISSELFVLAALESRGT-LADILKAAGATTANITQAIEQMRGGE- 147 (857)
T ss_pred -----CCCCCCCCcCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHcCcch-HHHHHHHcCCCHHHHHHHHHHhhccc-
Confidence 11124578999999999999999999999999999999999987554 44689999999988877654321110
Q ss_pred hccCCCCcccccccccccccccccCCCCCCCCchHHHhhchhcccccccCCCCccCCcHHHHHHHHHHHHhcCCCCCeEe
Q 007723 238 AKEGREPSLAKGVRENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317 (591)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~r~~~~~~vvG~~~~i~~l~~~L~~~~~~~ilL~ 317 (591)
.. ... .+....+.|++||+||++++|++++++++||++++++++++|+++.++|++|+
T Consensus 148 -----~~-----------~~~------~~~~~~~~l~~~~~~l~~~~r~~~l~~vigr~~ei~~~i~iL~r~~~~n~lL~ 205 (857)
T PRK10865 148 -----SV-----------NDQ------GAEDQRQALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLI 205 (857)
T ss_pred -----cc-----------ccc------ccccchhHHHHHhhhHHHHHhcCCCCcCCCCHHHHHHHHHHHhcCCcCceEEE
Confidence 00 000 01123468999999999999999999999999999999999999999999999
Q ss_pred cCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhccccccchHHHHHHHHHHHHHh-cCCeEEEEcCcchhhc
Q 007723 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK-SGDVILFIDEVHTLIG 396 (591)
Q Consensus 318 GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~~-~~~~ILfIDEi~~L~~ 396 (591)
||||||||+++++||+.+..+.+|..+.+.+++.++++.+++|.+++|+++++++.+++++.. .+++||||||+|.|++
T Consensus 206 G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~ 285 (857)
T PRK10865 206 GEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVG 285 (857)
T ss_pred CCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999999998765 4688999999999988
Q ss_pred CCCCCCCCCCccHHHHHhhcccccCCcEEEEecCChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHhh
Q 007723 397 SGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAH 476 (591)
Q Consensus 397 ~~~~~~~~~~~~~~~~n~L~~~le~g~v~lI~att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~ 476 (591)
+|.. .+..+++|+|++.+++|.++|||+||.++|++++++|++|.|||+.|.+.+|+.+++..||+.+..+|+.+
T Consensus 286 ~~~~-----~~~~d~~~~lkp~l~~g~l~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~~~~e~~ 360 (857)
T PRK10865 286 AGKA-----DGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELH 360 (857)
T ss_pred CCCC-----ccchhHHHHhcchhhcCCCeEEEcCCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHhhhhccC
Confidence 7654 34678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcHHHHHHHHHHhHHhhhcCCCcHHHHHHHHHHhhHhhhhhhccchh
Q 007723 477 HNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKE 527 (591)
Q Consensus 477 ~~i~i~~~al~~l~~~s~r~i~~~~lp~~ai~lld~a~a~~~~~~~~~~~~ 527 (591)
|++.++++++..++.+++||++++++|++|++++|.+++..++....++..
T Consensus 361 ~~v~~~d~a~~~a~~ls~ry~~~~~~pdkAi~LiD~aaa~~rl~~~~kp~~ 411 (857)
T PRK10865 361 HHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASSIRMQIDSKPEE 411 (857)
T ss_pred CCCCcCHHHHHHHHHHhhccccCCCCChHHHHHHHHHhcccccccccChHH
Confidence 999999999999999999999999999999999999999888876666654
No 7
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=100.00 E-value=8.2e-56 Score=500.15 Aligned_cols=411 Identities=38% Similarity=0.602 Sum_probs=354.2
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHhhcCCCcHHHHHHCCCCHHHHHHHHHHHhhcCCCCCCchhhccCCCCC
Q 007723 85 FTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAVVSIWHSTNNQDTDDAAAQGKPFS 164 (591)
Q Consensus 85 fT~~a~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~L~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (591)
+|+.+.++|..|+.+|+.++|.+|++||||++||.++....+|..+|++.+.+++.+...++...+. . + ...
T Consensus 2 ~~~~~~~~l~~a~~~a~~~~~~~~~~~h~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~--~-~~~ 73 (758)
T PRK11034 2 LNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPV-----L--P-ASE 73 (758)
T ss_pred cCHHHHHHHHHHHHHHHHcCCCcchHHHHHHHHHcChhHHHHHHHcCCCHHHHHHHHHHHHhhcCCc-----C--C-CCC
Confidence 6899999999999999999999999999999999876668899999999999999999988742110 0 0 001
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhhhcccchhhHHHHHhCCCHHHHHHHHHHHhhhhhhccCCCC
Q 007723 165 SAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEGREP 244 (591)
Q Consensus 165 ~~~~~~~S~~~k~vL~~A~~~A~~~g~~~I~~ehLLlall~~~~~~a~~iL~~~gv~~~~l~~~i~~~l~~~~~~~~~~~ 244 (591)
...+++++..++++|+.|..+|+.+|+.+|+++|||+||++++++.+.++|..+|++...+...+.. +. ... ...
T Consensus 74 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~i~~~~ll~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~-~~~-~~~ 148 (758)
T PRK11034 74 EERDTQPTLSFQRVLQRAVFHVQSSGRSEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISH---GT-RKD-EPS 148 (758)
T ss_pred CcCCcCCCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHhcCCcchHHHHHHHcCCCHHHHHHHHHh---CC-ccc-ccc
Confidence 1134678999999999999999999999999999999999998899999999999998877554221 10 000 000
Q ss_pred cccccccccccccccccCCCCCCCCchHHHhhchhcccccccCCCCccCCcHHHHHHHHHHHHhcCCCCCeEecCCCCcH
Q 007723 245 SLAKGVRENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGK 324 (591)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~r~~~~~~vvG~~~~i~~l~~~L~~~~~~~ilL~GppGvGK 324 (591)
. + +...+. ............|++|++||+++++.+++++++|+++++++++++|+++.++|+||+|||||||
T Consensus 149 ~------~-~~~~~~-~~~~~~~~~~~~l~~~~~~l~~~a~~g~~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGK 220 (758)
T PRK11034 149 Q------S-SDPGSQ-PNSEEQAGGEERMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGK 220 (758)
T ss_pred c------c-cccccc-ccccccccchhHHHHHHHhHHHHHHcCCCCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCH
Confidence 0 0 000000 0000001223689999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCccccCceEEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCC
Q 007723 325 TAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGN 404 (591)
Q Consensus 325 T~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~ 404 (591)
|++|+++++.+..+++|..+.++.++.++++.+++|.+++|+++.+++.+++.+.+.+++||||||||.|++.|..
T Consensus 221 T~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~---- 296 (758)
T PRK11034 221 TAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAA---- 296 (758)
T ss_pred HHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCC----
Confidence 9999999999999999999999999999999999999999999999999999998888899999999999988653
Q ss_pred CCccHHHHHhhcccccCCcEEEEecCChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHH
Q 007723 405 KGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLE 484 (591)
Q Consensus 405 ~~~~~~~~n~L~~~le~g~v~lI~att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~ 484 (591)
.+++.++.|+|++++++|+++||++||+++|++++..|++|.|||+.|.|++|+.+++..||+.+..+|+.+|++.|+++
T Consensus 297 ~~g~~d~~nlLkp~L~~g~i~vIgATt~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~ 376 (758)
T PRK11034 297 SGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAK 376 (758)
T ss_pred CCcHHHHHHHHHHHHhCCCeEEEecCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHH
Confidence 23467899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHhhhcCCCcHHHHHHHHHHhhHhhhh
Q 007723 485 AINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIE 520 (591)
Q Consensus 485 al~~l~~~s~r~i~~~~lp~~ai~lld~a~a~~~~~ 520 (591)
++..+++++.+|++++++|+|||++||+||+..++.
T Consensus 377 al~~a~~ls~ryi~~r~lPdKaidlldea~a~~~~~ 412 (758)
T PRK11034 377 AVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLM 412 (758)
T ss_pred HHHHHHHHhhccccCccChHHHHHHHHHHHHhhccC
Confidence 999999999999999999999999999999987763
No 8
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-49 Score=442.79 Aligned_cols=411 Identities=36% Similarity=0.502 Sum_probs=373.0
Q ss_pred ccchHHHhhHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHhhcCCCc--HHHHHHCC-CCHHHHHHHHHHHhhcCCCCCCc
Q 007723 78 ISSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESG-ITIDKAREAVVSIWHSTNNQDTD 154 (591)
Q Consensus 78 ~~~~~~~fT~~a~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~--~~~L~~~g-i~~~~l~~~~~~~~~~~~~~~~~ 154 (591)
...+++.||++|.++|..|+.+|+++||++++|+|++.+||.++++ .+++...+ ++...+...+...+.+.+.+
T Consensus 5 ~~t~~q~lT~~Aa~~L~~a~~~Arrrgh~qvtplH~~~~LLs~~t~~lr~ac~~~~~l~~ralelc~~v~l~rlpt~--- 81 (898)
T KOG1051|consen 5 VYTVQQTLTEEAATVLKQAVTEARRRGHAQVTPLHVASTLLSSPTGILRRACIKSHPLQCRALELCFNVSLNRLPTS--- 81 (898)
T ss_pred ccchHhhhCHHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHcCCchHHHHHHHhcCcccHHHHHHHHHHHHHhccCC---
Confidence 3567888999999999999999999999999999999999999998 67888888 99999999999999988764
Q ss_pred hhhccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhhhcccchhhHHHHHhCCCHHHHHHHHHHHhh
Q 007723 155 DAAAQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQ 234 (591)
Q Consensus 155 ~~~~~~~~~~~~~~~~~S~~~k~vL~~A~~~A~~~g~~~I~~ehLLlall~~~~~~a~~iL~~~gv~~~~l~~~i~~~l~ 234 (591)
.+++...+++..+++++..+.+....+++.+|..||+.+.++-.+++.+.++|+++|++..+++..|.+..+
T Consensus 82 --------~~p~~sn~l~aalkr~qa~qrr~~~~~~~~~vkvE~~~li~silDdp~vsrv~reag~~s~~vK~~ve~~~g 153 (898)
T KOG1051|consen 82 --------YGPPVSNALMAALKRAQAHQRRGCEEQQQQAVKVELEQLILSILDDPSVSRVMREAGFSSSAVKSAVEQPVG 153 (898)
T ss_pred --------CCCccchHhHHHHHHHHHHHHhcchhhccchhhHhHHhhheeeecCchHHHHHHHhcCChHHHHHHHHhhcc
Confidence 234556778899999999999999999999999999977777678889999999999999999998876552
Q ss_pred hhhhccCCCCcccccccccccccccccCCCCCCCCchHHHhhchhcccccccCCCCccCCc-HHHHHHHHHHHHhcCCCC
Q 007723 235 GELAKEGREPSLAKGVRENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGR-ETEIQRIIQILCRRTKNN 313 (591)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~r~~~~~~vvG~-~~~i~~l~~~L~~~~~~~ 313 (591)
.. +.+ +..+......|.+|+.+++..++.+.++|++|+ ++++++++++|.+++++|
T Consensus 154 ~~----~~~-------------------~~~~~~~~~~L~~~~~dl~p~a~~gkldPvigr~deeirRvi~iL~Rrtk~N 210 (898)
T KOG1051|consen 154 QF----RSP-------------------SRGPLWPLLFLENYGTDLTPRARQGKLDPVIGRHDEEIRRVIEILSRKTKNN 210 (898)
T ss_pred cc----CCC-------------------CcCCccchhHHHhcccccChhhhccCCCCccCCchHHHHHHHHHHhccCCCC
Confidence 11 000 001234568899999999999999999999999 999999999999999999
Q ss_pred CeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhccccccchHHHHHHHHHHHHH-hcCCeEEEEcCcc
Q 007723 314 PILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ-KSGDVILFIDEVH 392 (591)
Q Consensus 314 ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~-~~~~~ILfIDEi~ 392 (591)
++|+|+||+|||.++..+++++..|++|..+.++.++.+|+..+++|.+++|+++.+++.+.+++. ..+++||||||+|
T Consensus 211 PvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh 290 (898)
T KOG1051|consen 211 PVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELH 290 (898)
T ss_pred ceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEeccee
Confidence 999999999999999999999999999999999999999999999999999999999999999988 4578999999999
Q ss_pred hhhcCCCCCCCCCCccHHHHHhhcccccCCcEEEEecCChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHH
Q 007723 393 TLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREK 472 (591)
Q Consensus 393 ~L~~~~~~~~~~~~~~~~~~n~L~~~le~g~v~lI~att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~ 472 (591)
++++.+.. .+..++.|.|++.+.++.++||||||.++|+++++.+|+|.+||+.+.+..|+.+++..||.++..+
T Consensus 291 ~lvg~g~~-----~~~~d~~nlLkp~L~rg~l~~IGatT~e~Y~k~iekdPalErrw~l~~v~~pS~~~~~~iL~~l~~~ 365 (898)
T KOG1051|consen 291 WLVGSGSN-----YGAIDAANLLKPLLARGGLWCIGATTLETYRKCIEKDPALERRWQLVLVPIPSVENLSLILPGLSER 365 (898)
T ss_pred eeecCCCc-----chHHHHHHhhHHHHhcCCeEEEecccHHHHHHHHhhCcchhhCcceeEeccCcccchhhhhhhhhhh
Confidence 99988765 3378999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCcHHHHHHHHHHhHHhhhcCCCcHHHHHHHHHHhhHhhhhhhccchh
Q 007723 473 YEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKE 527 (591)
Q Consensus 473 ~~~~~~i~i~~~al~~l~~~s~r~i~~~~lp~~ai~lld~a~a~~~~~~~~~~~~ 527 (591)
|+.||++.++++++..++.++.+|++.+++|++++++.|+||+..++.....|..
T Consensus 366 ~e~~hg~~~s~~a~~~a~~~s~~~~t~r~lpd~aidl~dEa~a~~~~~~~~lP~w 420 (898)
T KOG1051|consen 366 YEVHHGVRISDESLFSAAQLSARYITLSFLPDCAIDLEDEAAALVKSQAESLPPW 420 (898)
T ss_pred hccccCCcccccccccccchhhhhcccCcCchhcccHHHHHHHHHhhhhhhCCHH
Confidence 9999999999999999999999999999999999999999999999977777776
No 9
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.96 E-value=1.5e-28 Score=250.64 Aligned_cols=237 Identities=25% Similarity=0.347 Sum_probs=181.2
Q ss_pred hhcccccccCCCCccCCcHHHH---HHHHHHHHhcCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeeh
Q 007723 278 VDLTARASEELIDPVIGRETEI---QRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (591)
Q Consensus 278 ~~l~~~~r~~~~~~vvG~~~~i---~~l~~~L~~~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~ 354 (591)
.||+.+.||.+|+++|||++.+ .-|..++.....+++||||||||||||||+.||+.. +..|..++
T Consensus 12 ~PLA~rmRP~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~----------~~~f~~~s- 80 (436)
T COG2256 12 MPLAERLRPKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTT----------NAAFEALS- 80 (436)
T ss_pred cChHHHhCCCCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhh----------CCceEEec-
Confidence 5899999999999999999977 457778888899999999999999999999999977 66777664
Q ss_pred hhhhccccccchHHHHHHHHHHHHHh----cCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCCcEEEEecC
Q 007723 355 GLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIAST 430 (591)
Q Consensus 355 ~~l~~g~~~~g~~~~~i~~i~~~~~~----~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g~v~lI~at 430 (591)
+..+|.+. ++.+++++++ ..+.||||||||++ +...|+.|++.+|+|.+++||||
T Consensus 81 -Av~~gvkd-------lr~i~e~a~~~~~~gr~tiLflDEIHRf-------------nK~QQD~lLp~vE~G~iilIGAT 139 (436)
T COG2256 81 -AVTSGVKD-------LREIIEEARKNRLLGRRTILFLDEIHRF-------------NKAQQDALLPHVENGTIILIGAT 139 (436)
T ss_pred -cccccHHH-------HHHHHHHHHHHHhcCCceEEEEehhhhc-------------ChhhhhhhhhhhcCCeEEEEecc
Confidence 34444443 6777777754 34799999999999 56678999999999999999999
Q ss_pred ChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHhhc---CCCCcHHHHHHHHHHhHHhhhcCC------
Q 007723 431 TQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHH---NCKFTLEAINAAVHLSARYISDRY------ 501 (591)
Q Consensus 431 t~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~---~i~i~~~al~~l~~~s~r~i~~~~------ 501 (591)
|.++ .|+++++|+|||.++.+.+.+.+++.++|.+.+...+... .+.+++++++.++..+.+..+...
T Consensus 140 TENP---sF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~ 216 (436)
T COG2256 140 TENP---SFELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELA 216 (436)
T ss_pred CCCC---CeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHH
Confidence 9997 7899999999999999999999999999988544443222 245899999999999976543200
Q ss_pred ----CcHH--HHHHHHHHhhHhhhhhhccchh---hhhhhhcCC-----hHH--HHHHHHHHhhcch
Q 007723 502 ----LPDK--AIDLVDEAGSRAHIELFKRKKE---QQTCILSKP-----PDD--YWQEIRTVQAMHE 552 (591)
Q Consensus 502 ----lp~~--ai~lld~a~a~~~~~~~~~~~~---~~i~~l~~~-----~~~--~~~~~~~~~~~~d 552 (591)
-+++ .++.|.+.. ..+...+++..+ +.+++++|+ +++ ||+.. .+..++
T Consensus 217 ~~~~~~~~~~~~~~l~~~l-~~~~~~~Dk~gD~hYdliSA~hKSvRGSD~dAALyylAR--mi~~Ge 280 (436)
T COG2256 217 ALSAEPDEVLILELLEEIL-QRRSARFDKDGDAHYDLISALHKSVRGSDPDAALYYLAR--MIEAGE 280 (436)
T ss_pred HHhcCCCcccCHHHHHHHH-hhhhhccCCCcchHHHHHHHHHHhhccCCcCHHHHHHHH--HHhcCC
Confidence 0111 122333222 223345566555 899999999 566 66654 355554
No 10
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.92 E-value=1.1e-24 Score=240.43 Aligned_cols=260 Identities=16% Similarity=0.149 Sum_probs=198.1
Q ss_pred hhcccccccCCCCccCCcHHHHHHHHHHHHhcCCCCC-eEecCCCCcHHHHHHHHHHHHHhCCCCcc--c----------
Q 007723 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP-ILLGESGVGKTAIAEGLAIRIVQAEVPVF--L---------- 344 (591)
Q Consensus 278 ~~l~~~~r~~~~~~vvG~~~~i~~l~~~L~~~~~~~i-lL~GppGvGKT~la~~lA~~l~~~~~p~~--~---------- 344 (591)
..|.+||||.+|+++|||++.++.|...+..++.+|. ||+||+|||||++++.|++.+.+...... .
T Consensus 4 ~vLarKYRPqtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~ 83 (830)
T PRK07003 4 QVLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREID 83 (830)
T ss_pred HhHHHHhCCCcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHh
Confidence 3589999999999999999999999999988776665 89999999999999999999976321100 0
Q ss_pred --cCceEEEeehhhhhccccccchHHHHHHHHHHHHH----hcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhccc
Q 007723 345 --LSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPS 418 (591)
Q Consensus 345 --~~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~----~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~ 418 (591)
....++++|... .+| .+.++.+++.+. ..+..|+||||+|+| +...+|.|++.
T Consensus 84 ~G~h~DviEIDAas------~rg--VDdIReLIe~a~~~P~~gr~KVIIIDEah~L-------------T~~A~NALLKt 142 (830)
T PRK07003 84 EGRFVDYVEMDAAS------NRG--VDEMAALLERAVYAPVDARFKVYMIDEVHML-------------TNHAFNAMLKT 142 (830)
T ss_pred cCCCceEEEecccc------ccc--HHHHHHHHHHHHhccccCCceEEEEeChhhC-------------CHHHHHHHHHH
Confidence 012355555321 111 122455555443 245689999999999 66788999999
Q ss_pred ccC--CcEEEEecCChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHh
Q 007723 419 LGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (591)
Q Consensus 419 le~--g~v~lI~att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~ 496 (591)
||+ .+++||++||... .+.++|+|||+.|.|..++.+++.++|+.++... ++.++++++..|++.+.+.
T Consensus 143 LEEPP~~v~FILaTtd~~-----KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~E----gI~id~eAL~lIA~~A~Gs 213 (830)
T PRK07003 143 LEEPPPHVKFILATTDPQ-----KIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEE----RIAFEPQALRLLARAAQGS 213 (830)
T ss_pred HHhcCCCeEEEEEECChh-----hccchhhhheEEEecCCcCHHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHcCCC
Confidence 986 4788888888753 3568999999999999999999999998887765 8999999999999999888
Q ss_pred hhcCCCcHHHHHHHHHHhhHhhhhhhccchhhhhhhhcCChHH-HHHHHHHHhhcchHHHHhhchhhHhhhccCCCcchh
Q 007723 497 ISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDD-YWQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIV 575 (591)
Q Consensus 497 i~~~~lp~~ai~lld~a~a~~~~~~~~~~~~~~i~~l~~~~~~-~~~~~~~~~~~~d~~~a~~~~~~~~~~~~~~~~~~~ 575 (591)
+++ ++++++++++.. ......+.|..+...++. ++.....++..+|+.++..+.+++...+.+....+.
T Consensus 214 mRd------ALsLLdQAia~~----~~~It~~~V~~~LG~~d~~~i~~ll~aL~~~d~~~~l~~~~~l~~~g~~~~~~l~ 283 (830)
T PRK07003 214 MRD------ALSLTDQAIAYS----ANEVTETAVSGMLGALDQTYMVRLLDALAAGDGPEILAVADEMALRSLSFSTALQ 283 (830)
T ss_pred HHH------HHHHHHHHHHhc----cCCcCHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHH
Confidence 765 999999988532 112223445555555554 788888999999999999999988887777654444
Q ss_pred hc
Q 007723 576 VE 577 (591)
Q Consensus 576 ~~ 577 (591)
++
T Consensus 284 dL 285 (830)
T PRK07003 284 DL 285 (830)
T ss_pred HH
Confidence 43
No 11
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.92 E-value=2.5e-24 Score=212.56 Aligned_cols=260 Identities=16% Similarity=0.162 Sum_probs=197.3
Q ss_pred hchhcccccccCCCCccCCcHHHHHHHHHHHHhcCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehh
Q 007723 276 FCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMG 355 (591)
Q Consensus 276 ~~~~l~~~~r~~~~~~vvG~~~~i~~l~~~L~~~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~ 355 (591)
.-..|+++|||++|++++||+.++..|...+.++..+|.|||||||||||+.|+++++.+.+ +.+..+++.+++.+
T Consensus 22 ~~~swteKYrPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~----~~~~~~rvl~lnaS 97 (346)
T KOG0989|consen 22 KHRSWTEKYRPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNC----EQLFPCRVLELNAS 97 (346)
T ss_pred CccchHHHhCCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcC----ccccccchhhhccc
Confidence 44679999999999999999999999999999988899999999999999999999999966 23345667766654
Q ss_pred hhhccccccchHHHHHHHHHHHHHh----------cCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccC--Cc
Q 007723 356 LLMAGAKERGELEARVTTLISEIQK----------SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GE 423 (591)
Q Consensus 356 ~l~~g~~~~g~~~~~i~~i~~~~~~----------~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~--g~ 423 (591)
... |- .-..+.++.. ..+.. ....|+||||.|.| ..++++.|+..|++ .+
T Consensus 98 der-Gi---svvr~Kik~f-akl~~~~~~~~~~~~~~fKiiIlDEcdsm-------------tsdaq~aLrr~mE~~s~~ 159 (346)
T KOG0989|consen 98 DER-GI---SVVREKIKNF-AKLTVLLKRSDGYPCPPFKIIILDECDSM-------------TSDAQAALRRTMEDFSRT 159 (346)
T ss_pred ccc-cc---cchhhhhcCH-HHHhhccccccCCCCCcceEEEEechhhh-------------hHHHHHHHHHHHhccccc
Confidence 422 11 1111222221 11111 12379999999999 78899999999985 57
Q ss_pred EEEEecCChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhhhcCCCc
Q 007723 424 LQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLP 503 (591)
Q Consensus 424 v~lI~att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i~~~~lp 503 (591)
.++|..||.-+ .+.+++.+||+.+.|+....++....|+.++.+. ++.+++++++.++..|.+.++.
T Consensus 160 trFiLIcnyls-----rii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E----~v~~d~~al~~I~~~S~GdLR~---- 226 (346)
T KOG0989|consen 160 TRFILICNYLS-----RIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKE----GVDIDDDALKLIAKISDGDLRR---- 226 (346)
T ss_pred eEEEEEcCChh-----hCChHHHhhHHHhcCCCcchHHHHHHHHHHHHHh----CCCCCHHHHHHHHHHcCCcHHH----
Confidence 78888888754 5668999999999999999999999999999987 9999999999999999999776
Q ss_pred HHHHHHHHHHhhHhhhhhhccchhhhhhhhcCC-hHHHHHHHHHHhhcchHHHHhhchhhHhhhccCCCcchhhccC
Q 007723 504 DKAIDLVDEAGSRAHIELFKRKKEQQTCILSKP-PDDYWQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIVVESS 579 (591)
Q Consensus 504 ~~ai~lld~a~a~~~~~~~~~~~~~~i~~l~~~-~~~~~~~~~~~~~~~d~~~a~~~~~~~~~~~~~~~~~~~~~~~ 579 (591)
|+..|+.+.. -+......-.++.+... ++.......+.+..+|+.+..++..+.-..+. +.++.|++
T Consensus 227 --Ait~Lqsls~----~gk~It~~~~~e~~~GvVp~~~l~~lle~a~S~d~~~~v~~~Rei~~sg~---~~~~lmsQ 294 (346)
T KOG0989|consen 227 --AITTLQSLSL----LGKRITTSLVNEELAGVVPDEKLLDLLELALSADTPNTVKRVREIMRSGY---SPLQLMSQ 294 (346)
T ss_pred --HHHHHHHhhc----cCcccchHHHHHHHhccCCHHHHHHHHHHHHccChHHHHHHHHHHHHhcc---CHHHHHHH
Confidence 9999998874 22223323445556634 55577788888889999887777655544333 33355554
No 12
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.91 E-value=1.6e-23 Score=223.81 Aligned_cols=254 Identities=16% Similarity=0.129 Sum_probs=185.7
Q ss_pred hhcccccccCCCCccCCcHHHHHHHHHHHHhcCCCC-CeEecCCCCcHHHHHHHHHHHHHhCCCCcc--c----------
Q 007723 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPVF--L---------- 344 (591)
Q Consensus 278 ~~l~~~~r~~~~~~vvG~~~~i~~l~~~L~~~~~~~-ilL~GppGvGKT~la~~lA~~l~~~~~p~~--~---------- 344 (591)
.+|+++|||.+|++++||+..+..|...+..++.++ +||+||+|||||++|+.+|+.+.+...+.. .
T Consensus 6 ~~L~~KyRP~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~ 85 (484)
T PRK14956 6 EVLSRKYRPQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEIT 85 (484)
T ss_pred chhHHHhCCCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHH
Confidence 679999999999999999999999999988877665 699999999999999999999876421110 0
Q ss_pred --cCceEEEeehhhhhccccccchHHHHHHHHHHHHH----hcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhccc
Q 007723 345 --LSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPS 418 (591)
Q Consensus 345 --~~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~----~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~ 418 (591)
....++++|... ..| .+.++.+.+.+. ..+..|+||||+|+| +.+++|.|+..
T Consensus 86 ~g~~~dviEIdaas------~~g--Vd~IReL~e~l~~~p~~g~~KV~IIDEah~L-------------s~~A~NALLKt 144 (484)
T PRK14956 86 KGISSDVLEIDAAS------NRG--IENIRELRDNVKFAPMGGKYKVYIIDEVHML-------------TDQSFNALLKT 144 (484)
T ss_pred ccCCccceeechhh------ccc--HHHHHHHHHHHHhhhhcCCCEEEEEechhhc-------------CHHHHHHHHHH
Confidence 011344554321 111 122444444443 245679999999999 67789999999
Q ss_pred ccC--CcEEEEecCChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHh
Q 007723 419 LGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (591)
Q Consensus 419 le~--g~v~lI~att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~ 496 (591)
+++ +++++|++||.. ..+.+++++||+.+.|..++.+++.+.|+.++... ++.++++++..+++.+++.
T Consensus 145 LEEPp~~viFILaTte~-----~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~E----gi~~e~eAL~~Ia~~S~Gd 215 (484)
T PRK14956 145 LEEPPAHIVFILATTEF-----HKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIE----NVQYDQEGLFWIAKKGDGS 215 (484)
T ss_pred hhcCCCceEEEeecCCh-----hhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHcCCh
Confidence 986 789999988874 35679999999999999999999999998887764 8999999999999999988
Q ss_pred hhcCCCcHHHHHHHHHHhhHhhhhhhccchhhhhhhhcCChH-HHHHHHHHHhhcch-HHHHhhchhhHhhhccCCC
Q 007723 497 ISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD-DYWQEIRTVQAMHE-VVQGSRLKYDDVVASMGDT 571 (591)
Q Consensus 497 i~~~~lp~~ai~lld~a~a~~~~~~~~~~~~~~i~~l~~~~~-~~~~~~~~~~~~~d-~~~a~~~~~~~~~~~~~~~ 571 (591)
+++ |+.+||.+++.. . .......|..+..... ++.....+++...| ...|..+.++.-+.+.+..
T Consensus 216 ~Rd------AL~lLeq~i~~~---~-~~it~~~V~~~lg~~~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~ 282 (484)
T PRK14956 216 VRD------MLSFMEQAIVFT---D-SKLTGVKIRKMIGYHGIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIY 282 (484)
T ss_pred HHH------HHHHHHHHHHhC---C-CCcCHHHHHHHhCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHH
Confidence 665 999999987531 1 1111223333333332 25555556666654 5567777777766655554
No 13
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.91 E-value=1e-23 Score=230.25 Aligned_cols=253 Identities=16% Similarity=0.151 Sum_probs=190.3
Q ss_pred hhcccccccCCCCccCCcHHHHHHHHHHHHhcCCCCC-eEecCCCCcHHHHHHHHHHHHHhCCC-----C--cccc----
Q 007723 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP-ILLGESGVGKTAIAEGLAIRIVQAEV-----P--VFLL---- 345 (591)
Q Consensus 278 ~~l~~~~r~~~~~~vvG~~~~i~~l~~~L~~~~~~~i-lL~GppGvGKT~la~~lA~~l~~~~~-----p--~~~~---- 345 (591)
..|.+||||.+|+++|||++.++.|.+.+...+.+|. ||+||+|||||++|+.|++.+.+..- + ....
T Consensus 4 ~vLarKYRPqtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~s 83 (700)
T PRK12323 4 QVLARKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRA 83 (700)
T ss_pred hhHHHHhCCCcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHH
Confidence 4688999999999999999999999999998887775 89999999999999999999976210 0 0000
Q ss_pred --------CceEEEeehhhhhccccccchHHHHHHHHHHHHH----hcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHH
Q 007723 346 --------SKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISN 413 (591)
Q Consensus 346 --------~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~----~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n 413 (591)
...++++|... ..+ .+.++++++.+. ..+..|+||||+|+| +...+|
T Consensus 84 C~~I~aG~hpDviEIdAas------~~g--VDdIReLie~~~~~P~~gr~KViIIDEah~L-------------s~~AaN 142 (700)
T PRK12323 84 CTEIDAGRFVDYIEMDAAS------NRG--VDEMAQLLDKAVYAPTAGRFKVYMIDEVHML-------------TNHAFN 142 (700)
T ss_pred HHHHHcCCCCcceEecccc------cCC--HHHHHHHHHHHHhchhcCCceEEEEEChHhc-------------CHHHHH
Confidence 11455555431 111 122455555443 345689999999999 667899
Q ss_pred hhcccccC--CcEEEEecCChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHH
Q 007723 414 LLKPSLGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVH 491 (591)
Q Consensus 414 ~L~~~le~--g~v~lI~att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~ 491 (591)
.|++.||+ +++++|++||... .+.++++|||+.+.|..++.+++.+.|+.++... ++.+++++++.|++
T Consensus 143 ALLKTLEEPP~~v~FILaTtep~-----kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~E----gi~~d~eAL~~IA~ 213 (700)
T PRK12323 143 AMLKTLEEPPEHVKFILATTDPQ-----KIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEE----GIAHEVNALRLLAQ 213 (700)
T ss_pred HHHHhhccCCCCceEEEEeCChH-----hhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHc----CCCCCHHHHHHHHH
Confidence 99999986 6788888888753 4569999999999999999999999998887654 89999999999999
Q ss_pred HhHHhhhcCCCcHHHHHHHHHHhhHhhhhhhccchhhhhhhhcCChHH-HHHHHHHHhhcchHHHHhhchhhHhhhccCC
Q 007723 492 LSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDD-YWQEIRTVQAMHEVVQGSRLKYDDVVASMGD 570 (591)
Q Consensus 492 ~s~r~i~~~~lp~~ai~lld~a~a~~~~~~~~~~~~~~i~~l~~~~~~-~~~~~~~~~~~~d~~~a~~~~~~~~~~~~~~ 570 (591)
.+++.+++ ++.++|++++.. ......+.+..+...++. ........+..+|+..+..+.++..+.+.+.
T Consensus 214 ~A~Gs~Rd------ALsLLdQaia~~----~~~It~~~V~~~LG~~d~~~i~~Ll~aL~~~d~~~~l~l~~~l~~~G~d~ 283 (700)
T PRK12323 214 AAQGSMRD------ALSLTDQAIAYS----AGNVSEEAVRGMLGAIDQSYLVRLLDALAAEDGAALLAIADEMAGRSLSF 283 (700)
T ss_pred HcCCCHHH------HHHHHHHHHHhc----cCCcCHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCH
Confidence 99887554 899999887521 122223445566666554 5666667888899988888777766655553
No 14
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.90 E-value=7.1e-24 Score=204.03 Aligned_cols=189 Identities=22% Similarity=0.307 Sum_probs=130.4
Q ss_pred hhcccccccCCCCccCCcHHHHHHHHHHHHh-----cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEe
Q 007723 278 VDLTARASEELIDPVIGRETEIQRIIQILCR-----RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSL 352 (591)
Q Consensus 278 ~~l~~~~r~~~~~~vvG~~~~i~~l~~~L~~-----~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~l 352 (591)
.++.+.+||.+|+++|||++.+..+.-++.. ....|+|||||||+||||||+.||+.+ +..+...
T Consensus 12 ~~l~~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~----------~~~~~~~ 81 (233)
T PF05496_consen 12 APLAERLRPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL----------GVNFKIT 81 (233)
T ss_dssp S-HHHHTS-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC----------T--EEEE
T ss_pred hhhHHhcCCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc----------CCCeEec
Confidence 5678899999999999999999886655442 234689999999999999999999988 4555554
Q ss_pred ehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCCc---------
Q 007723 353 DMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGE--------- 423 (591)
Q Consensus 353 d~~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g~--------- 423 (591)
+...+ ...++. ..++..+ ..+.||||||||+| +..+++.|++.||.+.
T Consensus 82 sg~~i----~k~~dl----~~il~~l--~~~~ILFIDEIHRl-------------nk~~qe~LlpamEd~~idiiiG~g~ 138 (233)
T PF05496_consen 82 SGPAI----EKAGDL----AAILTNL--KEGDILFIDEIHRL-------------NKAQQEILLPAMEDGKIDIIIGKGP 138 (233)
T ss_dssp ECCC------SCHHH----HHHHHT----TT-EEEECTCCC---------------HHHHHHHHHHHHCSEEEEEBSSSS
T ss_pred cchhh----hhHHHH----HHHHHhc--CCCcEEEEechhhc-------------cHHHHHHHHHHhccCeEEEEecccc
Confidence 43221 112333 3333333 24679999999999 7788999999998653
Q ss_pred -----------EEEEecCChhHHHhhhcccHHHHccCcce-eecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHH
Q 007723 424 -----------LQCIASTTQDEHRTQFEKDKALARRFQPV-LISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVH 491 (591)
Q Consensus 424 -----------v~lI~att~~e~~~~~~~d~aL~~Rf~~i-~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~ 491 (591)
+.+|||||.. -.+..+|++||..+ .+..++.+++.+|+..-+.. .++.+++++..+++.
T Consensus 139 ~ar~~~~~l~~FTligATTr~-----g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~----l~i~i~~~~~~~Ia~ 209 (233)
T PF05496_consen 139 NARSIRINLPPFTLIGATTRA-----GLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARI----LNIEIDEDAAEEIAR 209 (233)
T ss_dssp S-BEEEEE----EEEEEESSG-----CCTSHCCCTTSSEEEE----THHHHHHHHHHCCHC----TT-EE-HHHHHHHHH
T ss_pred ccceeeccCCCceEeeeeccc-----cccchhHHhhcceecchhcCCHHHHHHHHHHHHHH----hCCCcCHHHHHHHHH
Confidence 5788888885 34679999999964 79999999999999665554 499999999999999
Q ss_pred HhHHhhhcCCCcHHHHHHHHHHh
Q 007723 492 LSARYISDRYLPDKAIDLVDEAG 514 (591)
Q Consensus 492 ~s~r~i~~~~lp~~ai~lld~a~ 514 (591)
.|.+ .|+-|..||..+-
T Consensus 210 rsrG------tPRiAnrll~rvr 226 (233)
T PF05496_consen 210 RSRG------TPRIANRLLRRVR 226 (233)
T ss_dssp CTTT------SHHHHHHHHHHHC
T ss_pred hcCC------ChHHHHHHHHHHH
Confidence 8754 4888999997654
No 15
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.90 E-value=5.4e-23 Score=225.31 Aligned_cols=259 Identities=15% Similarity=0.096 Sum_probs=197.8
Q ss_pred hhcccccccCCCCccCCcHHHHHHHHHHHHhcCCCC-CeEecCCCCcHHHHHHHHHHHHHhCCCCcc--c----------
Q 007723 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPVF--L---------- 344 (591)
Q Consensus 278 ~~l~~~~r~~~~~~vvG~~~~i~~l~~~L~~~~~~~-ilL~GppGvGKT~la~~lA~~l~~~~~p~~--~---------- 344 (591)
..|++||||.+|+++|||++.++.|...+...+.+| +||+||+|||||++|+.+|+.+.+...+.. .
T Consensus 4 ~~l~~kyRP~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~ 83 (509)
T PRK14958 4 QVLARKWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREID 83 (509)
T ss_pred hhHHHHHCCCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHh
Confidence 458999999999999999999999999998877777 489999999999999999999976432110 0
Q ss_pred --cCceEEEeehhhhhccccccchHHHHHHHHHHHHHh----cCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhccc
Q 007723 345 --LSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPS 418 (591)
Q Consensus 345 --~~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~~----~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~ 418 (591)
....++++|.+. ..+ .+.++.+++.+.. .+..|+||||+|+| +.+.+|.|+..
T Consensus 84 ~g~~~d~~eidaas------~~~--v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~l-------------s~~a~naLLk~ 142 (509)
T PRK14958 84 EGRFPDLFEVDAAS------RTK--VEDTRELLDNIPYAPTKGRFKVYLIDEVHML-------------SGHSFNALLKT 142 (509)
T ss_pred cCCCceEEEEcccc------cCC--HHHHHHHHHHHhhccccCCcEEEEEEChHhc-------------CHHHHHHHHHH
Confidence 112366666432 111 1225556655432 35679999999999 66789999999
Q ss_pred ccC--CcEEEEecCChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHh
Q 007723 419 LGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (591)
Q Consensus 419 le~--g~v~lI~att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~ 496 (591)
|+. .++.+|++||... .+.+++.+||..+.+..++.+++...+..++.+. ++.+++++++.+++.+.+.
T Consensus 143 LEepp~~~~fIlattd~~-----kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~e----gi~~~~~al~~ia~~s~Gs 213 (509)
T PRK14958 143 LEEPPSHVKFILATTDHH-----KLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEE----NVEFENAALDLLARAANGS 213 (509)
T ss_pred HhccCCCeEEEEEECChH-----hchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHcCCc
Confidence 985 5788888877642 3557899999999999999999999998887765 8999999999999999876
Q ss_pred hhcCCCcHHHHHHHHHHhhHhhhhhhccchhhhhhhhcCChH-HHHHHHHHHhhcchHHHHhhchhhHhhhccCCCcchh
Q 007723 497 ISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD-DYWQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIV 575 (591)
Q Consensus 497 i~~~~lp~~ai~lld~a~a~~~~~~~~~~~~~~i~~l~~~~~-~~~~~~~~~~~~~d~~~a~~~~~~~~~~~~~~~~~~~ 575 (591)
++ .++.++|.+++. +......+.|..+...++ ...+....++..+|.+++..+.++....+.++...+.
T Consensus 214 lR------~al~lLdq~ia~----~~~~It~~~V~~~lg~~~~~~i~~ll~al~~~d~~~~l~~~~~l~~~g~~~~~il~ 283 (509)
T PRK14958 214 VR------DALSLLDQSIAY----GNGKVLIADVKTMLGTIEPLLLFDILEALAAKAGDRLLGCVTRLVEQGVDFSNALA 283 (509)
T ss_pred HH------HHHHHHHHHHhc----CCCCcCHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHH
Confidence 54 499999998753 122233345666655544 4888888999999999999999988888777654443
Q ss_pred h
Q 007723 576 V 576 (591)
Q Consensus 576 ~ 576 (591)
+
T Consensus 284 ~ 284 (509)
T PRK14958 284 D 284 (509)
T ss_pred H
Confidence 3
No 16
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.90 E-value=6.4e-23 Score=224.49 Aligned_cols=255 Identities=16% Similarity=0.122 Sum_probs=192.6
Q ss_pred hhcccccccCCCCccCCcHHHHHHHHHHHHhcCCCCC-eEecCCCCcHHHHHHHHHHHHHhCCCCcc--c----------
Q 007723 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP-ILLGESGVGKTAIAEGLAIRIVQAEVPVF--L---------- 344 (591)
Q Consensus 278 ~~l~~~~r~~~~~~vvG~~~~i~~l~~~L~~~~~~~i-lL~GppGvGKT~la~~lA~~l~~~~~p~~--~---------- 344 (591)
..|++||||.+|+++|||+..++.|...+.+.+.++. ||+||+|||||++|+++|+.+.+...+.. +
T Consensus 3 ~~LarKyRPktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~ 82 (702)
T PRK14960 3 QVLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVN 82 (702)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHh
Confidence 4689999999999999999999999999988775555 89999999999999999999876321100 0
Q ss_pred --cCceEEEeehhhhhccccccchHHHHHHHHHHHHHh----cCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhccc
Q 007723 345 --LSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPS 418 (591)
Q Consensus 345 --~~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~~----~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~ 418 (591)
....++++|.+. ..+ .+.++.+++.+.. .+..|+||||+|+| +...+|.|+..
T Consensus 83 ~g~hpDviEIDAAs------~~~--VddIReli~~~~y~P~~gk~KV~IIDEVh~L-------------S~~A~NALLKt 141 (702)
T PRK14960 83 EGRFIDLIEIDAAS------RTK--VEDTRELLDNVPYAPTQGRFKVYLIDEVHML-------------STHSFNALLKT 141 (702)
T ss_pred cCCCCceEEecccc------cCC--HHHHHHHHHHHhhhhhcCCcEEEEEechHhc-------------CHHHHHHHHHH
Confidence 112455555432 111 2235556555432 45679999999999 66788999999
Q ss_pred ccC--CcEEEEecCChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHh
Q 007723 419 LGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (591)
Q Consensus 419 le~--g~v~lI~att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~ 496 (591)
|++ +.+.+|++|+... .+.+++++||..+.|.+++.+++.+.|+.++.+. ++.++++++..+++.+.+.
T Consensus 142 LEEPP~~v~FILaTtd~~-----kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kE----gI~id~eAL~~IA~~S~Gd 212 (702)
T PRK14960 142 LEEPPEHVKFLFATTDPQ-----KLPITVISRCLQFTLRPLAVDEITKHLGAILEKE----QIAADQDAIWQIAESAQGS 212 (702)
T ss_pred HhcCCCCcEEEEEECChH-----hhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHcCCC
Confidence 986 6678888777643 2457899999999999999999999998888765 8999999999999999877
Q ss_pred hhcCCCcHHHHHHHHHHhhHhhhhhhccchhhhhhhhcCChHH-HHHHHHHHhhcchHHHHhhchhhHhhhccCCCc
Q 007723 497 ISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDD-YWQEIRTVQAMHEVVQGSRLKYDDVVASMGDTS 572 (591)
Q Consensus 497 i~~~~lp~~ai~lld~a~a~~~~~~~~~~~~~~i~~l~~~~~~-~~~~~~~~~~~~d~~~a~~~~~~~~~~~~~~~~ 572 (591)
+++ ++.++|.+++. +......+.|..+....+. ..+....++..+|..++..+.++....+.+...
T Consensus 213 LRd------ALnLLDQaIay----g~g~IT~edV~~lLG~~d~e~IfdLldAI~k~d~~~al~~L~el~~~g~d~~~ 279 (702)
T PRK14960 213 LRD------ALSLTDQAIAY----GQGAVHHQDVKEMLGLIDRTIIYDLILAVHQNQREKVSQLLLQFRYQALDVSL 279 (702)
T ss_pred HHH------HHHHHHHHHHh----cCCCcCHHHHHHHhccCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCHHH
Confidence 655 89999998863 1222223445555445443 677778899999999999988888777666543
No 17
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.90 E-value=4.5e-23 Score=206.66 Aligned_cols=191 Identities=21% Similarity=0.301 Sum_probs=151.5
Q ss_pred hchhcccccccCCCCccCCcHHHHHH---HHHHHHhcCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEe
Q 007723 276 FCVDLTARASEELIDPVIGRETEIQR---IIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSL 352 (591)
Q Consensus 276 ~~~~l~~~~r~~~~~~vvG~~~~i~~---l~~~L~~~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~l 352 (591)
-..+|.+++||++++++|||++.+.+ |...+...+.++++||||||||||+||+.|+...... ..+++++
T Consensus 124 qh~PLaermRPktL~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~-------Syrfvel 196 (554)
T KOG2028|consen 124 QHKPLAERMRPKTLDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKH-------SYRFVEL 196 (554)
T ss_pred ccCChhhhcCcchHHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCC-------ceEEEEE
Confidence 35689999999999999999997754 5566777888999999999999999999999865221 2445554
Q ss_pred ehhhhhccccccchHHHHHHHHHHHHHh-----cCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCCcEEEE
Q 007723 353 DMGLLMAGAKERGELEARVTTLISEIQK-----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCI 427 (591)
Q Consensus 353 d~~~l~~g~~~~g~~~~~i~~i~~~~~~-----~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g~v~lI 427 (591)
++..++..+ ++.+|+..++ ..+.||||||||++ +...|+.|+|.++.|.+.+|
T Consensus 197 --SAt~a~t~d-------vR~ife~aq~~~~l~krkTilFiDEiHRF-------------NksQQD~fLP~VE~G~I~lI 254 (554)
T KOG2028|consen 197 --SATNAKTND-------VRDIFEQAQNEKSLTKRKTILFIDEIHRF-------------NKSQQDTFLPHVENGDITLI 254 (554)
T ss_pred --eccccchHH-------HHHHHHHHHHHHhhhcceeEEEeHHhhhh-------------hhhhhhcccceeccCceEEE
Confidence 333344333 5666666543 45789999999999 55678999999999999999
Q ss_pred ecCChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHh---------hcCCCCcHHHHHHHHHHhHHhhh
Q 007723 428 ASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEA---------HHNCKFTLEAINAAVHLSARYIS 498 (591)
Q Consensus 428 ~att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~---------~~~i~i~~~al~~l~~~s~r~i~ 498 (591)
|+||+++ .|.++.+|.+||.++.+...+.+....||.+...-+.. +..+.+++.++++++.++.+..+
T Consensus 255 GATTENP---SFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 255 GATTENP---SFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred ecccCCC---ccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 9999986 78899999999999999999999999999885543321 11346889999999999876543
No 18
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.90 E-value=1.2e-22 Score=228.33 Aligned_cols=252 Identities=15% Similarity=0.128 Sum_probs=184.2
Q ss_pred hhcccccccCCCCccCCcHHHHHHHHHHHHhcCCCCC-eEecCCCCcHHHHHHHHHHHHHhCCCCc--ccc---------
Q 007723 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP-ILLGESGVGKTAIAEGLAIRIVQAEVPV--FLL--------- 345 (591)
Q Consensus 278 ~~l~~~~r~~~~~~vvG~~~~i~~l~~~L~~~~~~~i-lL~GppGvGKT~la~~lA~~l~~~~~p~--~~~--------- 345 (591)
..|.+||||.+|++||||+..++.|..++...+.+|. ||+||+|||||++|+.||+.+.+..... .+.
T Consensus 4 ~~LaeKyRP~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~ 83 (944)
T PRK14949 4 QVLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIA 83 (944)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHh
Confidence 5789999999999999999999999999988777776 8999999999999999999997642110 000
Q ss_pred ---CceEEEeehhhhhccccccchHHHHHHHHHHHHH----hcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhccc
Q 007723 346 ---SKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPS 418 (591)
Q Consensus 346 ---~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~----~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~ 418 (591)
...++++|... ..+ ...++.+++.+. ..+..|+||||+|+| +.+.+|.|++.
T Consensus 84 ~g~~~DviEidAas------~~k--VDdIReLie~v~~~P~~gk~KViIIDEAh~L-------------T~eAqNALLKt 142 (944)
T PRK14949 84 QGRFVDLIEVDAAS------RTK--VDDTRELLDNVQYRPSRGRFKVYLIDEVHML-------------SRSSFNALLKT 142 (944)
T ss_pred cCCCceEEEecccc------ccC--HHHHHHHHHHHHhhhhcCCcEEEEEechHhc-------------CHHHHHHHHHH
Confidence 11233333211 111 122444444443 245789999999999 77899999999
Q ss_pred ccC--CcEEEEecCChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHh
Q 007723 419 LGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (591)
Q Consensus 419 le~--g~v~lI~att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~ 496 (591)
||+ +++++|++||... .+.++|++||.++.|.+++.+++...|+.++... ++.+++++++.|++++++.
T Consensus 143 LEEPP~~vrFILaTTe~~-----kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~E----gI~~edeAL~lIA~~S~Gd 213 (944)
T PRK14949 143 LEEPPEHVKFLLATTDPQ-----KLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQE----QLPFEAEALTLLAKAANGS 213 (944)
T ss_pred HhccCCCeEEEEECCCch-----hchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHcCCC
Confidence 996 6788888888754 3568999999999999999999999998877763 8999999999999999887
Q ss_pred hhcCCCcHHHHHHHHHHhhHhhhhhhccchhhhhhhhcCChHH-HHHHHHHHhhcchHHHHhhchhhHhhhccC
Q 007723 497 ISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDD-YWQEIRTVQAMHEVVQGSRLKYDDVVASMG 569 (591)
Q Consensus 497 i~~~~lp~~ai~lld~a~a~~~~~~~~~~~~~~i~~l~~~~~~-~~~~~~~~~~~~d~~~a~~~~~~~~~~~~~ 569 (591)
++ +++.+++.+++.. ........+..+...++. +.......+..+|+..+..+.++..+.+.+
T Consensus 214 ~R------~ALnLLdQala~~----~~~It~~~V~~llG~iD~~~V~~llksI~~~D~~aaL~~l~~Ll~~G~D 277 (944)
T PRK14949 214 MR------DALSLTDQAIAFG----GGQVMLTQVQTMLGSIDEQHVIALLKALTDADIGVLMQTCAQVLAFGAD 277 (944)
T ss_pred HH------HHHHHHHHHHHhc----CCcccHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 55 4999999887421 111111233444444444 455666677778888887777666544433
No 19
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.89 E-value=1.4e-22 Score=225.05 Aligned_cols=254 Identities=17% Similarity=0.128 Sum_probs=187.0
Q ss_pred hhcccccccCCCCccCCcHHHHHHHHHHHHhcCCCCC-eEecCCCCcHHHHHHHHHHHHHhCCCC--ccccCc-------
Q 007723 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP-ILLGESGVGKTAIAEGLAIRIVQAEVP--VFLLSK------- 347 (591)
Q Consensus 278 ~~l~~~~r~~~~~~vvG~~~~i~~l~~~L~~~~~~~i-lL~GppGvGKT~la~~lA~~l~~~~~p--~~~~~~------- 347 (591)
..|.+||||.+|+++|||+..++.|...+...+.+|. ||+||+|||||++|+.+|+.+.+.... .....|
T Consensus 4 ~~La~KyRP~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~ 83 (647)
T PRK07994 4 QVLARKWRPQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIE 83 (647)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHH
Confidence 4689999999999999999999999999988777775 899999999999999999999774211 011111
Q ss_pred -----eEEEeehhhhhccccccchHHHHHHHHHHHHH----hcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhccc
Q 007723 348 -----RIMSLDMGLLMAGAKERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPS 418 (591)
Q Consensus 348 -----~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~----~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~ 418 (591)
.++++|... ..+ .+.++.+++.+. ..+..|+||||+|+| +.+.+|.|++.
T Consensus 84 ~g~~~D~ieidaas------~~~--VddiR~li~~~~~~p~~g~~KV~IIDEah~L-------------s~~a~NALLKt 142 (647)
T PRK07994 84 QGRFVDLIEIDAAS------RTK--VEDTRELLDNVQYAPARGRFKVYLIDEVHML-------------SRHSFNALLKT 142 (647)
T ss_pred cCCCCCceeecccc------cCC--HHHHHHHHHHHHhhhhcCCCEEEEEechHhC-------------CHHHHHHHHHH
Confidence 344444321 111 122455555543 245789999999999 67889999999
Q ss_pred ccC--CcEEEEecCChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHh
Q 007723 419 LGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (591)
Q Consensus 419 le~--g~v~lI~att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~ 496 (591)
||+ +++++|++||... .+.+++++||..+.|..++.+++...|..++... ++.++++++..|+.++.+.
T Consensus 143 LEEPp~~v~FIL~Tt~~~-----kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e----~i~~e~~aL~~Ia~~s~Gs 213 (647)
T PRK07994 143 LEEPPEHVKFLLATTDPQ-----KLPVTILSRCLQFHLKALDVEQIRQQLEHILQAE----QIPFEPRALQLLARAADGS 213 (647)
T ss_pred HHcCCCCeEEEEecCCcc-----ccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHcCCC
Confidence 996 6788888887753 4668999999999999999999999998877655 8999999999999999887
Q ss_pred hhcCCCcHHHHHHHHHHhhHhhhhhhccchhhhhhhhcCChHH-HHHHHHHHhhcchHHHHhhchhhHhhhccCCC
Q 007723 497 ISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDD-YWQEIRTVQAMHEVVQGSRLKYDDVVASMGDT 571 (591)
Q Consensus 497 i~~~~lp~~ai~lld~a~a~~~~~~~~~~~~~~i~~l~~~~~~-~~~~~~~~~~~~d~~~a~~~~~~~~~~~~~~~ 571 (591)
++. ++.++|.+++.. ........+..+...++. .......++..+|...+..+.++..+.+.++.
T Consensus 214 ~R~------Al~lldqaia~~----~~~it~~~v~~~lg~~d~~~~~~ll~al~~~d~~~~l~~~~~l~~~g~d~~ 279 (647)
T PRK07994 214 MRD------ALSLTDQAIASG----NGQVTTDDVSAMLGTLDDDQALSLLEALVEGDGERVMALINQLAERGPDWE 279 (647)
T ss_pred HHH------HHHHHHHHHHhc----CCCcCHHHHHHHHccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 554 999999887531 111222344445444443 44455566777788877777777665554443
No 20
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.89 E-value=3e-22 Score=216.41 Aligned_cols=248 Identities=16% Similarity=0.189 Sum_probs=191.7
Q ss_pred hcccccccCCCCccCCcHHHHHHHHHHHHhcCCC-CCeEecCCCCcHHHHHHHHHHHHHhCCCCcc--------------
Q 007723 279 DLTARASEELIDPVIGRETEIQRIIQILCRRTKN-NPILLGESGVGKTAIAEGLAIRIVQAEVPVF-------------- 343 (591)
Q Consensus 279 ~l~~~~r~~~~~~vvG~~~~i~~l~~~L~~~~~~-~ilL~GppGvGKT~la~~lA~~l~~~~~p~~-------------- 343 (591)
+|..||||.+|+++|||+..++.|...+...+.+ ++||+||+|+||||+|+.+|+.+.+...|..
T Consensus 2 ~la~KyRP~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~ 81 (491)
T PRK14964 2 NLALKYRPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKN 81 (491)
T ss_pred ChhHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhc
Confidence 5889999999999999999999999988876655 6899999999999999999999876543321
Q ss_pred ccCceEEEeehhhhhccccccchHHHHHHHHHHHHHh----cCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccc
Q 007723 344 LLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL 419 (591)
Q Consensus 344 ~~~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~~----~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~l 419 (591)
.....++++|.++ ..| .+.++.+++.+.. ....|+||||+|.| +.+.+|.|+..|
T Consensus 82 ~~~~Dv~eidaas------~~~--vddIR~Iie~~~~~P~~~~~KVvIIDEah~L-------------s~~A~NaLLK~L 140 (491)
T PRK14964 82 SNHPDVIEIDAAS------NTS--VDDIKVILENSCYLPISSKFKVYIIDEVHML-------------SNSAFNALLKTL 140 (491)
T ss_pred cCCCCEEEEeccc------CCC--HHHHHHHHHHHHhccccCCceEEEEeChHhC-------------CHHHHHHHHHHH
Confidence 1234566776542 122 1235666665543 45679999999999 567899999999
Q ss_pred cC--CcEEEEecCChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhh
Q 007723 420 GR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497 (591)
Q Consensus 420 e~--g~v~lI~att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i 497 (591)
++ .++.+|++||... .+.+++.+||+.+.+..++.+++...|..++.+. ++.+++++++.+++.+.+.+
T Consensus 141 EePp~~v~fIlatte~~-----Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~E----gi~i~~eAL~lIa~~s~Gsl 211 (491)
T PRK14964 141 EEPAPHVKFILATTEVK-----KIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKE----NIEHDEESLKLIAENSSGSM 211 (491)
T ss_pred hCCCCCeEEEEEeCChH-----HHHHHHHHhheeeecccccHHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHcCCCH
Confidence 85 5788888887643 2557999999999999999999999998888766 89999999999999998765
Q ss_pred hcCCCcHHHHHHHHHHhhHhhhhhhccchhhhhhhhcCChHH-HHHHHHHHhhcchHHHHhhchhhHhhh
Q 007723 498 SDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDD-YWQEIRTVQAMHEVVQGSRLKYDDVVA 566 (591)
Q Consensus 498 ~~~~lp~~ai~lld~a~a~~~~~~~~~~~~~~i~~l~~~~~~-~~~~~~~~~~~~d~~~a~~~~~~~~~~ 566 (591)
++ ++.+|+.++.... .....+.|.++....+. ..+...+++..+|..+|..+.++....
T Consensus 212 R~------alslLdqli~y~~----~~It~e~V~~llg~~~~~~If~L~~aI~~~d~~~Al~~l~~Ll~~ 271 (491)
T PRK14964 212 RN------ALFLLEQAAIYSN----NKISEKSVRDLLGCVDKHILEDLVEAILLGDAQSALNVFRELCNT 271 (491)
T ss_pred HH------HHHHHHHHHHhcC----CCCCHHHHHHHHccCCHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 54 8999999886322 12222445555444444 778888999999999999988877653
No 21
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.89 E-value=1e-22 Score=219.32 Aligned_cols=261 Identities=18% Similarity=0.178 Sum_probs=206.8
Q ss_pred hhcccccccCCCCccCCcHHHHHHHHHHHHhcCC-CCCeEecCCCCcHHHHHHHHHHHHHhCCCCc--cccC--------
Q 007723 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTK-NNPILLGESGVGKTAIAEGLAIRIVQAEVPV--FLLS-------- 346 (591)
Q Consensus 278 ~~l~~~~r~~~~~~vvG~~~~i~~l~~~L~~~~~-~~ilL~GppGvGKT~la~~lA~~l~~~~~p~--~~~~-------- 346 (591)
..|..||||..|++++||+..++.|...+...+. +..+|.||.|||||++|+.+|+.+++...+. .+..
T Consensus 4 q~L~rKyRP~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~ 83 (515)
T COG2812 4 QVLARKYRPKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEIN 83 (515)
T ss_pred HHHHHHhCcccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhh
Confidence 4578999999999999999999999999888665 4568999999999999999999998764221 1111
Q ss_pred ----ceEEEeehhhhhccccccchHHHHHHHHHHHHHh----cCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhccc
Q 007723 347 ----KRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPS 418 (591)
Q Consensus 347 ----~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~~----~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~ 418 (591)
..++++|.. +..| .+.++.+.+.+.. .+..|++|||+|+| +..++|.|+..
T Consensus 84 ~g~~~DviEiDaA------Sn~g--VddiR~i~e~v~y~P~~~ryKVyiIDEvHML-------------S~~afNALLKT 142 (515)
T COG2812 84 EGSLIDVIEIDAA------SNTG--VDDIREIIEKVNYAPSEGRYKVYIIDEVHML-------------SKQAFNALLKT 142 (515)
T ss_pred cCCcccchhhhhh------hccC--hHHHHHHHHHhccCCccccceEEEEecHHhh-------------hHHHHHHHhcc
Confidence 223333322 2222 2336677776653 56789999999999 77889999999
Q ss_pred ccC--CcEEEEecCChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHh
Q 007723 419 LGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (591)
Q Consensus 419 le~--g~v~lI~att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~ 496 (591)
+|+ .+|.+|.+||... .+.+++.+||+.+.+...+.+++...|..++.+. ++.++++++..+++.+.+.
T Consensus 143 LEEPP~hV~FIlATTe~~-----Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E----~I~~e~~aL~~ia~~a~Gs 213 (515)
T COG2812 143 LEEPPSHVKFILATTEPQ-----KIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKE----GINIEEDALSLIARAAEGS 213 (515)
T ss_pred cccCccCeEEEEecCCcC-----cCchhhhhccccccccCCCHHHHHHHHHHHHHhc----CCccCHHHHHHHHHHcCCC
Confidence 985 4799999999853 5779999999999999999999999998888766 9999999999999999999
Q ss_pred hhcCCCcHHHHHHHHHHhhHhhhhhhccchhhhhhhhcCChHH-HHHHHHHHhhcchHHHHhhchhhHhhhccCCCcchh
Q 007723 497 ISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDD-YWQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIV 575 (591)
Q Consensus 497 i~~~~lp~~ai~lld~a~a~~~~~~~~~~~~~~i~~l~~~~~~-~~~~~~~~~~~~d~~~a~~~~~~~~~~~~~~~~~~~ 575 (591)
+++ ++.+||.+.+... .......+..+...++. +......++..+|.+.+....++..+.+.++...+.
T Consensus 214 ~RD------alslLDq~i~~~~----~~It~~~v~~~lG~~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~G~~~~~~l~ 283 (515)
T COG2812 214 LRD------ALSLLDQAIAFGE----GEITLESVRDMLGLTDIEKLLSLLEAILKGDAKEALRLINELIEEGKDPEAFLE 283 (515)
T ss_pred hhh------HHHHHHHHHHccC----CcccHHHHHHHhCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 888 8999999996322 11222456677777665 778888899999999999999999888888766655
Q ss_pred hcc
Q 007723 576 VES 578 (591)
Q Consensus 576 ~~~ 578 (591)
++.
T Consensus 284 dl~ 286 (515)
T COG2812 284 DLL 286 (515)
T ss_pred HHH
Confidence 543
No 22
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.89 E-value=2.3e-22 Score=222.92 Aligned_cols=260 Identities=17% Similarity=0.147 Sum_probs=195.4
Q ss_pred hhcccccccCCCCccCCcHHHHHHHHHHHHhcCCCCC-eEecCCCCcHHHHHHHHHHHHHhCCCC-------ccc-----
Q 007723 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP-ILLGESGVGKTAIAEGLAIRIVQAEVP-------VFL----- 344 (591)
Q Consensus 278 ~~l~~~~r~~~~~~vvG~~~~i~~l~~~L~~~~~~~i-lL~GppGvGKT~la~~lA~~l~~~~~p-------~~~----- 344 (591)
.-|++||||.+|+++|||+..++.|.+.+...+.+|. ||+||+|||||++|+.+|+.+.+.... ...
T Consensus 4 ~vla~KyRP~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~ 83 (618)
T PRK14951 4 LVLARKYRPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQA 83 (618)
T ss_pred HHHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHH
Confidence 3588999999999999999999999999998887776 899999999999999999999763210 000
Q ss_pred -------cCceEEEeehhhhhccccccchHHHHHHHHHHHHHh----cCCeEEEEcCcchhhcCCCCCCCCCCccHHHHH
Q 007723 345 -------LSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISN 413 (591)
Q Consensus 345 -------~~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~~----~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n 413 (591)
....++++|.. ...| .+.++.+++.+.. .+..|+||||+|+| +.+.+|
T Consensus 84 C~~i~~g~h~D~~eldaa------s~~~--Vd~iReli~~~~~~p~~g~~KV~IIDEvh~L-------------s~~a~N 142 (618)
T PRK14951 84 CRDIDSGRFVDYTELDAA------SNRG--VDEVQQLLEQAVYKPVQGRFKVFMIDEVHML-------------TNTAFN 142 (618)
T ss_pred HHHHHcCCCCceeecCcc------cccC--HHHHHHHHHHHHhCcccCCceEEEEEChhhC-------------CHHHHH
Confidence 01134444422 1122 1235566655432 34679999999999 667899
Q ss_pred hhcccccC--CcEEEEecCChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHH
Q 007723 414 LLKPSLGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVH 491 (591)
Q Consensus 414 ~L~~~le~--g~v~lI~att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~ 491 (591)
.|+..|++ +++.+|++||... .+.+++++||..+.|..++.+++.+.|+.++.+. ++.++++++..+++
T Consensus 143 aLLKtLEEPP~~~~fIL~Ttd~~-----kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~e----gi~ie~~AL~~La~ 213 (618)
T PRK14951 143 AMLKTLEEPPEYLKFVLATTDPQ-----KVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAE----NVPAEPQALRLLAR 213 (618)
T ss_pred HHHHhcccCCCCeEEEEEECCch-----hhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHc----CCCCCHHHHHHHHH
Confidence 99999985 5678888776643 2457899999999999999999999998877765 89999999999999
Q ss_pred HhHHhhhcCCCcHHHHHHHHHHhhHhhhhhhccchhhhhhhhcCChH-HHHHHHHHHhhcchHHHHhhchhhHhhhccCC
Q 007723 492 LSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD-DYWQEIRTVQAMHEVVQGSRLKYDDVVASMGD 570 (591)
Q Consensus 492 ~s~r~i~~~~lp~~ai~lld~a~a~~~~~~~~~~~~~~i~~l~~~~~-~~~~~~~~~~~~~d~~~a~~~~~~~~~~~~~~ 570 (591)
.+.+.+++ ++.++|.+++.. ........|..+....+ .+.+....++..+|...+.++.++..+.+.+.
T Consensus 214 ~s~GslR~------al~lLdq~ia~~----~~~It~~~V~~~Lg~~~~~~i~~LldaL~~~d~~~al~~l~~l~~~G~~~ 283 (618)
T PRK14951 214 AARGSMRD------ALSLTDQAIAFG----SGQLQEAAVRQMLGSVDRSHVFRLIDALAQGDGRTVVETADELRLNGLSA 283 (618)
T ss_pred HcCCCHHH------HHHHHHHHHHhc----CCCcCHHHHHHHHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCH
Confidence 99877655 899999888641 22222234555555544 48888889999999999999998888877776
Q ss_pred Ccchhhc
Q 007723 571 TSEIVVE 577 (591)
Q Consensus 571 ~~~~~~~ 577 (591)
...+.++
T Consensus 284 ~~il~~l 290 (618)
T PRK14951 284 ASTLEEM 290 (618)
T ss_pred HHHHHHH
Confidence 5544444
No 23
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.88 E-value=7.8e-22 Score=217.97 Aligned_cols=252 Identities=17% Similarity=0.083 Sum_probs=186.2
Q ss_pred cccccccCCCCccCCcHHHHHHHHHHHHhcCCCC-CeEecCCCCcHHHHHHHHHHHHHhCCCCcc---------------
Q 007723 280 LTARASEELIDPVIGRETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPVF--------------- 343 (591)
Q Consensus 280 l~~~~r~~~~~~vvG~~~~i~~l~~~L~~~~~~~-ilL~GppGvGKT~la~~lA~~l~~~~~p~~--------------- 343 (591)
|.+||||.+|++++||+..++.|...+...+.+| +||+||+|||||++|+.+|+.+.+...+..
T Consensus 3 l~~kyRP~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~ 82 (584)
T PRK14952 3 LYRKYRPATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPN 82 (584)
T ss_pred HHHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcc
Confidence 6789999999999999999999999999888888 589999999999999999999976432210
Q ss_pred -ccCceEEEeehhhhhccccccchHHHHHHHHHHHHH----hcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhccc
Q 007723 344 -LLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPS 418 (591)
Q Consensus 344 -~~~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~----~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~ 418 (591)
.....++++|.+. ..| .+.++.+.+.+. .....|+||||+|+| +...+|.|+..
T Consensus 83 ~~~~~dvieidaas------~~g--vd~iRel~~~~~~~P~~~~~KVvIIDEah~L-------------t~~A~NALLK~ 141 (584)
T PRK14952 83 GPGSIDVVELDAAS------HGG--VDDTRELRDRAFYAPAQSRYRIFIVDEAHMV-------------TTAGFNALLKI 141 (584)
T ss_pred cCCCceEEEecccc------ccC--HHHHHHHHHHHHhhhhcCCceEEEEECCCcC-------------CHHHHHHHHHH
Confidence 0123455555322 111 122444444432 246789999999999 66789999999
Q ss_pred ccC--CcEEEEecCChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHh
Q 007723 419 LGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (591)
Q Consensus 419 le~--g~v~lI~att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~ 496 (591)
|+. +++++|++||... .+.++|++||+.+.|..++.+++.+.|..++.+. ++.++++++..+++++.+.
T Consensus 142 LEEpp~~~~fIL~tte~~-----kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~e----gi~i~~~al~~Ia~~s~Gd 212 (584)
T PRK14952 142 VEEPPEHLIFIFATTEPE-----KVLPTIRSRTHHYPFRLLPPRTMRALIARICEQE----GVVVDDAVYPLVIRAGGGS 212 (584)
T ss_pred HhcCCCCeEEEEEeCChH-----hhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHcCCC
Confidence 986 6788888887653 4568999999999999999999999998877765 8999999999999998876
Q ss_pred hhcCCCcHHHHHHHHHHhhHhhhhhhccchhhhhhhhcCC-hHHHHHHHHHHhhcchHHHHhhchhhHhhhccCC
Q 007723 497 ISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKP-PDDYWQEIRTVQAMHEVVQGSRLKYDDVVASMGD 570 (591)
Q Consensus 497 i~~~~lp~~ai~lld~a~a~~~~~~~~~~~~~~i~~l~~~-~~~~~~~~~~~~~~~d~~~a~~~~~~~~~~~~~~ 570 (591)
+++ ++.+||..++... ......+.+..+... .+...+....++..+|...+..+.++....+.+.
T Consensus 213 lR~------aln~Ldql~~~~~---~~~It~~~v~~llg~~~~~~i~~lv~al~~~d~~~al~~l~~l~~~g~d~ 278 (584)
T PRK14952 213 PRD------TLSVLDQLLAGAA---DTHVTYQRALGLLGATDVALIDDAVDALAADDAAALFGAIESVIDAGHDP 278 (584)
T ss_pred HHH------HHHHHHHHHhccC---CCCcCHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCH
Confidence 554 8999998875321 111112233344444 3446667777899999999988877765544333
No 24
>PLN03025 replication factor C subunit; Provisional
Probab=99.88 E-value=5.7e-22 Score=206.86 Aligned_cols=252 Identities=13% Similarity=0.144 Sum_probs=182.2
Q ss_pred hhcccccccCCCCccCCcHHHHHHHHHHHHhcCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhh
Q 007723 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLL 357 (591)
Q Consensus 278 ~~l~~~~r~~~~~~vvG~~~~i~~l~~~L~~~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l 357 (591)
.+|++||||.+|++++|+++.+..|..++.....+|++|+||||||||++|+++|+.+.+... ...+++++.+..
T Consensus 1 ~~w~~kyrP~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~-----~~~~~eln~sd~ 75 (319)
T PLN03025 1 LPWVEKYRPTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNY-----KEAVLELNASDD 75 (319)
T ss_pred CChhhhcCCCCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcccC-----ccceeeeccccc
Confidence 379999999999999999999999999988888889999999999999999999999854321 123455554322
Q ss_pred hccccccchHHHHHHHHHHHH---HhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccC--CcEEEEecCCh
Q 007723 358 MAGAKERGELEARVTTLISEI---QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQCIASTTQ 432 (591)
Q Consensus 358 ~~g~~~~g~~~~~i~~i~~~~---~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~--g~v~lI~att~ 432 (591)
. ....+.+.++.+.... ......|+||||+|.| ....++.|+..++. ...++|.++|.
T Consensus 76 ~----~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~l-------------t~~aq~aL~~~lE~~~~~t~~il~~n~ 138 (319)
T PLN03025 76 R----GIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSM-------------TSGAQQALRRTMEIYSNTTRFALACNT 138 (319)
T ss_pred c----cHHHHHHHHHHHHhccccCCCCCeEEEEEechhhc-------------CHHHHHHHHHHHhcccCCceEEEEeCC
Confidence 1 1112222222211110 0123679999999999 56678889888874 44566666665
Q ss_pred hHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhhhcCCCcHHHHHHHHH
Q 007723 433 DEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDE 512 (591)
Q Consensus 433 ~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i~~~~lp~~ai~lld~ 512 (591)
.. .+.++|++||..+.+.+|+.++....|+.++.+. ++.++++++++++..+.+.++. ++..|+.
T Consensus 139 ~~-----~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~e----gi~i~~~~l~~i~~~~~gDlR~------aln~Lq~ 203 (319)
T PLN03025 139 SS-----KIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEAE----KVPYVPEGLEAIIFTADGDMRQ------ALNNLQA 203 (319)
T ss_pred cc-----ccchhHHHhhhcccCCCCCHHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHcCCCHHH------HHHHHHH
Confidence 32 3568999999999999999999999998887765 9999999999999999877654 8888874
Q ss_pred HhhHhhhhhhccchhhhhhhhc-CChHHHHHHHHHHhhcchHHHHhhchhhHhhhccCCC
Q 007723 513 AGSRAHIELFKRKKEQQTCILS-KPPDDYWQEIRTVQAMHEVVQGSRLKYDDVVASMGDT 571 (591)
Q Consensus 513 a~a~~~~~~~~~~~~~~i~~l~-~~~~~~~~~~~~~~~~~d~~~a~~~~~~~~~~~~~~~ 571 (591)
+.. +......+.+..+. ..+.........++..+|++.|..+.++.-..+.++.
T Consensus 204 ~~~-----~~~~i~~~~v~~~~~~~~~~~i~~~i~~~~~~~~~~a~~~l~~ll~~g~~~~ 258 (319)
T PLN03025 204 THS-----GFGFVNQENVFKVCDQPHPLHVKNIVRNCLKGKFDDACDGLKQLYDLGYSPT 258 (319)
T ss_pred HHh-----cCCCCCHHHHHHHcCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHH
Confidence 331 11112222344433 3344467777788999999999998888766555543
No 25
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.88 E-value=5e-22 Score=219.46 Aligned_cols=260 Identities=17% Similarity=0.156 Sum_probs=196.3
Q ss_pred hhcccccccCCCCccCCcHHHHHHHHHHHHhcCCC-CCeEecCCCCcHHHHHHHHHHHHHhCCCCcc--cc---------
Q 007723 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKN-NPILLGESGVGKTAIAEGLAIRIVQAEVPVF--LL--------- 345 (591)
Q Consensus 278 ~~l~~~~r~~~~~~vvG~~~~i~~l~~~L~~~~~~-~ilL~GppGvGKT~la~~lA~~l~~~~~p~~--~~--------- 345 (591)
..|.+||||.+|+++|||+..++.|...+..++.+ .+||+||+|||||++|+.|++.+.+...+.. ..
T Consensus 4 ~vLarKYRP~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~ 83 (709)
T PRK08691 4 QVLARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQID 83 (709)
T ss_pred hhHHHHhCCCCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHh
Confidence 45899999999999999999999999998876655 4699999999999999999999876432110 00
Q ss_pred ---CceEEEeehhhhhccccccchHHHHHHHHHHHHH----hcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhccc
Q 007723 346 ---SKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPS 418 (591)
Q Consensus 346 ---~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~----~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~ 418 (591)
...++++|... ..+ .+.++.+++.+. ..+..|+||||+|.| +...+|.|+..
T Consensus 84 ~g~~~DvlEidaAs------~~g--Vd~IRelle~a~~~P~~gk~KVIIIDEad~L-------------s~~A~NALLKt 142 (709)
T PRK08691 84 AGRYVDLLEIDAAS------NTG--IDNIREVLENAQYAPTAGKYKVYIIDEVHML-------------SKSAFNAMLKT 142 (709)
T ss_pred ccCccceEEEeccc------cCC--HHHHHHHHHHHHhhhhhCCcEEEEEECcccc-------------CHHHHHHHHHH
Confidence 11234444221 112 233556665442 245689999999999 56678899999
Q ss_pred ccC--CcEEEEecCChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHh
Q 007723 419 LGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (591)
Q Consensus 419 le~--g~v~lI~att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~ 496 (591)
|+. +.+.+|++|+... .+..++++||..+.|..++.+++...|..++.+. ++.++++++..|++.+.+.
T Consensus 143 LEEPp~~v~fILaTtd~~-----kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kE----gi~id~eAL~~Ia~~A~Gs 213 (709)
T PRK08691 143 LEEPPEHVKFILATTDPH-----KVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSE----KIAYEPPALQLLGRAAAGS 213 (709)
T ss_pred HHhCCCCcEEEEEeCCcc-----ccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHc----CCCcCHHHHHHHHHHhCCC
Confidence 984 5778888877543 4568899999999999999999999998887765 8999999999999999877
Q ss_pred hhcCCCcHHHHHHHHHHhhHhhhhhhccchhhhhhhhcCChHH-HHHHHHHHhhcchHHHHhhchhhHhhhccCCCcchh
Q 007723 497 ISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDD-YWQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIV 575 (591)
Q Consensus 497 i~~~~lp~~ai~lld~a~a~~~~~~~~~~~~~~i~~l~~~~~~-~~~~~~~~~~~~d~~~a~~~~~~~~~~~~~~~~~~~ 575 (591)
+++ ++.+||.+++. +......+.|..+....+. ..+....++..+|+..+..+.++....+.+....+.
T Consensus 214 lRd------AlnLLDqaia~----g~g~It~e~V~~lLG~~d~~~If~LldAL~~~d~~~al~~l~~L~~~G~d~~~~l~ 283 (709)
T PRK08691 214 MRD------ALSLLDQAIAL----GSGKVAENDVRQMIGAVDKQYLYELLTGIINQDGAALLAKAQEMAACAVGFDNALG 283 (709)
T ss_pred HHH------HHHHHHHHHHh----cCCCcCHHHHHHHHcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHH
Confidence 655 99999998863 1222223445555555444 888888999999999999999999888877765544
Q ss_pred hc
Q 007723 576 VE 577 (591)
Q Consensus 576 ~~ 577 (591)
++
T Consensus 284 ~L 285 (709)
T PRK08691 284 EL 285 (709)
T ss_pred HH
Confidence 44
No 26
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=7.7e-22 Score=198.69 Aligned_cols=185 Identities=22% Similarity=0.305 Sum_probs=152.5
Q ss_pred CCCCccCCcHHHHHHHHHHHHh-------------cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEee
Q 007723 287 ELIDPVIGRETEIQRIIQILCR-------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (591)
Q Consensus 287 ~~~~~vvG~~~~i~~l~~~L~~-------------~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld 353 (591)
-+++++=|.++.|+.|.+.+.- ..+.++|||||||||||.||+++|+.. ++.|+.+.
T Consensus 148 vtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T----------~AtFIrvv 217 (406)
T COG1222 148 VTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT----------DATFIRVV 217 (406)
T ss_pred CChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc----------CceEEEec
Confidence 4677888999999998887543 245789999999999999999999977 78899998
Q ss_pred hhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhccccc-------CCcEEE
Q 007723 354 MGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG-------RGELQC 426 (591)
Q Consensus 354 ~~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le-------~g~v~l 426 (591)
.++++ -+|.|+-...++++|.-++...++|+||||||.+-+++... +.++..++|-.|+++|. ++++.+
T Consensus 218 gSElV--qKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~--~t~gDrEVQRTmleLL~qlDGFD~~~nvKV 293 (406)
T COG1222 218 GSELV--QKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDS--GTSGDREVQRTMLELLNQLDGFDPRGNVKV 293 (406)
T ss_pred cHHHH--HHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccC--CCCchHHHHHHHHHHHHhccCCCCCCCeEE
Confidence 88888 46889999999999999999999999999999996665432 23567888887777664 689999
Q ss_pred EecCChhHHHhhhcccHHHHc--cCc-ceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHH-HHHHHHHhHHh
Q 007723 427 IASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEA-INAAVHLSARY 496 (591)
Q Consensus 427 I~att~~e~~~~~~~d~aL~~--Rf~-~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~a-l~~l~~~s~r~ 496 (591)
|+|||..+ -+||+|+| ||+ .|+|+.|+.+.+.+||+-+..+. .+.+++ ++.+++.+..+
T Consensus 294 I~ATNR~D-----~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM------~l~~dvd~e~la~~~~g~ 356 (406)
T COG1222 294 IMATNRPD-----ILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKM------NLADDVDLELLARLTEGF 356 (406)
T ss_pred EEecCCcc-----ccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhc------cCccCcCHHHHHHhcCCC
Confidence 99999964 58999999 998 59999999999999998887754 455544 67777776554
No 27
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.88 E-value=1.6e-21 Score=211.59 Aligned_cols=254 Identities=19% Similarity=0.152 Sum_probs=185.6
Q ss_pred hhcccccccCCCCccCCcHHHHHHHHHHHHhcCCCC-CeEecCCCCcHHHHHHHHHHHHHhCCCCcc-------------
Q 007723 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPVF------------- 343 (591)
Q Consensus 278 ~~l~~~~r~~~~~~vvG~~~~i~~l~~~L~~~~~~~-ilL~GppGvGKT~la~~lA~~l~~~~~p~~------------- 343 (591)
..|.++|||.+|++++||++.++.|...+...+.++ +||+|||||||||+|+.+|+.+.+...+..
T Consensus 2 ~~l~~kyRP~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~ 81 (472)
T PRK14962 2 EALYRKYRPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSID 81 (472)
T ss_pred chhHHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHh
Confidence 357899999999999999999999999888777655 699999999999999999999865321110
Q ss_pred -ccCceEEEeehhhhhccccccchHHHHHHHHHHHHHh----cCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhccc
Q 007723 344 -LLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPS 418 (591)
Q Consensus 344 -~~~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~~----~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~ 418 (591)
.....++.++.+. .+| ...++.+.+.+.. ....||||||+|.| ..+.++.|+..
T Consensus 82 ~g~~~dv~el~aa~------~~g--id~iR~i~~~~~~~p~~~~~kVvIIDE~h~L-------------t~~a~~~LLk~ 140 (472)
T PRK14962 82 EGTFMDVIELDAAS------NRG--IDEIRKIRDAVGYRPMEGKYKVYIIDEVHML-------------TKEAFNALLKT 140 (472)
T ss_pred cCCCCccEEEeCcc------cCC--HHHHHHHHHHHhhChhcCCeEEEEEEChHHh-------------HHHHHHHHHHH
Confidence 0011345554321 222 1224444444332 34679999999999 55678888888
Q ss_pred ccC--CcEEEEecCChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHh
Q 007723 419 LGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (591)
Q Consensus 419 le~--g~v~lI~att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~ 496 (591)
++. +.+++|++|+... .+.+++.+||..+.+.+++.+++..+|+.++... ++.+++++++.+++.+.+.
T Consensus 141 LE~p~~~vv~Ilattn~~-----kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~e----gi~i~~eal~~Ia~~s~Gd 211 (472)
T PRK14962 141 LEEPPSHVVFVLATTNLE-----KVPPTIISRCQVIEFRNISDELIIKRLQEVAEAE----GIEIDREALSFIAKRASGG 211 (472)
T ss_pred HHhCCCcEEEEEEeCChH-----hhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHhCCC
Confidence 886 6788888777432 4679999999999999999999999998777654 8999999999999988766
Q ss_pred hhcCCCcHHHHHHHHHHhhHhhhhhhccchhhhhhhhcCChHHHHHHHHHHhhcchHHHHhhchhhHhhhccCC
Q 007723 497 ISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKYDDVVASMGD 570 (591)
Q Consensus 497 i~~~~lp~~ai~lld~a~a~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~d~~~a~~~~~~~~~~~~~~ 570 (591)
++. ++++|+.++... ......++.-..+...++........++..+|+..|..+.++.-..+.+.
T Consensus 212 lR~------aln~Le~l~~~~---~~~It~e~V~~~l~~~~~~~i~~li~si~~~d~~~Al~~l~~ll~~Gedp 276 (472)
T PRK14962 212 LRD------ALTMLEQVWKFS---EGKITLETVHEALGLIPIEVVRDYINAIFNGDVKRVFTVLDDVYYSGKDY 276 (472)
T ss_pred HHH------HHHHHHHHHHhc---CCCCCHHHHHHHHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCH
Confidence 554 888998766421 11122222223344556667788889999999999999988876654443
No 28
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.88 E-value=2e-21 Score=211.65 Aligned_cols=257 Identities=18% Similarity=0.142 Sum_probs=192.2
Q ss_pred hhcccccccCCCCccCCcHHHHHHHHHHHHhcC-CCCCeEecCCCCcHHHHHHHHHHHHHhCCC----C--c--------
Q 007723 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRT-KNNPILLGESGVGKTAIAEGLAIRIVQAEV----P--V-------- 342 (591)
Q Consensus 278 ~~l~~~~r~~~~~~vvG~~~~i~~l~~~L~~~~-~~~ilL~GppGvGKT~la~~lA~~l~~~~~----p--~-------- 342 (591)
.+|+++|||.+|++++||+..++.|...+...+ .+++||+||+|||||++|+.+|+.+.+... | .
T Consensus 9 ~~la~kyRP~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C 88 (507)
T PRK06645 9 IPFARKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNC 88 (507)
T ss_pred cchhhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHH
Confidence 688999999999999999999999998777655 367899999999999999999999976321 0 0
Q ss_pred ----cccCceEEEeehhhhhccccccchHHHHHHHHHHHHHh----cCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHh
Q 007723 343 ----FLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNL 414 (591)
Q Consensus 343 ----~~~~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~~----~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~ 414 (591)
......++++|... ..| ...++.+++.+.. ....|+||||+|.| +...+|.
T Consensus 89 ~~i~~~~h~Dv~eidaas------~~~--vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~L-------------s~~a~na 147 (507)
T PRK06645 89 ISFNNHNHPDIIEIDAAS------KTS--VDDIRRIIESAEYKPLQGKHKIFIIDEVHML-------------SKGAFNA 147 (507)
T ss_pred HHHhcCCCCcEEEeeccC------CCC--HHHHHHHHHHHHhccccCCcEEEEEEChhhc-------------CHHHHHH
Confidence 00112455555321 111 2335666665543 45789999999999 5677889
Q ss_pred hcccccC--CcEEEEecCChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHH
Q 007723 415 LKPSLGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHL 492 (591)
Q Consensus 415 L~~~le~--g~v~lI~att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~ 492 (591)
|+..++. ..+++|++||... .+.+++.+||..+.+..++.+++..+|+.++.+. ++.+++++++.+++.
T Consensus 148 LLk~LEepp~~~vfI~aTte~~-----kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~e----gi~ie~eAL~~Ia~~ 218 (507)
T PRK06645 148 LLKTLEEPPPHIIFIFATTEVQ-----KIPATIISRCQRYDLRRLSFEEIFKLLEYITKQE----NLKTDIEALRIIAYK 218 (507)
T ss_pred HHHHHhhcCCCEEEEEEeCChH-----HhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHc----CCCCCHHHHHHHHHH
Confidence 9988885 5678887776643 3568999999999999999999999998888765 899999999999999
Q ss_pred hHHhhhcCCCcHHHHHHHHHHhhHhhhhhhccchhhhhhhhcCC-hHHHHHHHHHHhhcchHHHHhhchhhHhhhccCCC
Q 007723 493 SARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKP-PDDYWQEIRTVQAMHEVVQGSRLKYDDVVASMGDT 571 (591)
Q Consensus 493 s~r~i~~~~lp~~ai~lld~a~a~~~~~~~~~~~~~~i~~l~~~-~~~~~~~~~~~~~~~d~~~a~~~~~~~~~~~~~~~ 571 (591)
+.+.+++ ++.+||.+++...-.+.. ...+.|..+... .+...+....++..+|.++|..+.++.-..+.+..
T Consensus 219 s~GslR~------al~~Ldkai~~~~~~~~~-It~~~V~~llg~~~~~~if~L~~ai~~~d~~~Al~~l~~L~~~g~~~~ 291 (507)
T PRK06645 219 SEGSARD------AVSILDQAASMSAKSDNI-ISPQVINQMLGLVDSSVIIEFVEYIIHRETEKAINLINKLYGSSVNLE 291 (507)
T ss_pred cCCCHHH------HHHHHHHHHHhhccCCCC-cCHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHH
Confidence 8876554 999999987543211111 222445555444 44578888899999999999999888777666554
No 29
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.87 E-value=1.6e-21 Score=213.57 Aligned_cols=259 Identities=17% Similarity=0.131 Sum_probs=187.4
Q ss_pred hhcccccccCCCCccCCcHHHHHHHHHHHHhcCCCC-CeEecCCCCcHHHHHHHHHHHHHhCCCC--cccc---------
Q 007723 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVP--VFLL--------- 345 (591)
Q Consensus 278 ~~l~~~~r~~~~~~vvG~~~~i~~l~~~L~~~~~~~-ilL~GppGvGKT~la~~lA~~l~~~~~p--~~~~--------- 345 (591)
.+|+++|||.+|++++|++..++.|...+..++.++ +||+||+|||||++|+.+|+.+.+.... ....
T Consensus 4 ~~La~KyRP~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~ 83 (546)
T PRK14957 4 QALARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAIN 83 (546)
T ss_pred hhHHHHHCcCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHh
Confidence 468999999999999999999999999998877666 6899999999999999999998653211 0000
Q ss_pred ---CceEEEeehhhhhccccccchHHHHHHHHHHHHH----hcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhccc
Q 007723 346 ---SKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPS 418 (591)
Q Consensus 346 ---~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~----~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~ 418 (591)
...++++|... ..| . +.++.+++.+. ..+..|+||||+|.| +...+|.|+..
T Consensus 84 ~~~~~dlieidaas------~~g-v-d~ir~ii~~~~~~p~~g~~kViIIDEa~~l-------------s~~a~naLLK~ 142 (546)
T PRK14957 84 NNSFIDLIEIDAAS------RTG-V-EETKEILDNIQYMPSQGRYKVYLIDEVHML-------------SKQSFNALLKT 142 (546)
T ss_pred cCCCCceEEeeccc------ccC-H-HHHHHHHHHHHhhhhcCCcEEEEEechhhc-------------cHHHHHHHHHH
Confidence 12445554321 111 1 12444554443 246789999999999 66789999999
Q ss_pred ccC--CcEEEEecCChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHh
Q 007723 419 LGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (591)
Q Consensus 419 le~--g~v~lI~att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~ 496 (591)
|++ +.+.+|++||.. ..+.+++++||..+.+.+++.+++...|..++.++ ++.+++++++.+++.+.+.
T Consensus 143 LEepp~~v~fIL~Ttd~-----~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~e----gi~~e~~Al~~Ia~~s~Gd 213 (546)
T PRK14957 143 LEEPPEYVKFILATTDY-----HKIPVTILSRCIQLHLKHISQADIKDQLKIILAKE----NINSDEQSLEYIAYHAKGS 213 (546)
T ss_pred HhcCCCCceEEEEECCh-----hhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHcCCC
Confidence 996 577788877653 23457799999999999999999999998887765 8999999999999999876
Q ss_pred hhcCCCcHHHHHHHHHHhhHhhhhhhccchhhhhhhhcCChH-HHHHHHHHHhhcchHHHHhhchhhHhhhccCCCcchh
Q 007723 497 ISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD-DYWQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIV 575 (591)
Q Consensus 497 i~~~~lp~~ai~lld~a~a~~~~~~~~~~~~~~i~~l~~~~~-~~~~~~~~~~~~~d~~~a~~~~~~~~~~~~~~~~~~~ 575 (591)
++. ++.+|+.+++... .....+.+.++....+ ...+....++..+|...+..+.++....+.+....+.
T Consensus 214 lR~------alnlLek~i~~~~----~~It~~~V~~~l~~~~~~~v~~ll~Al~~~d~~~~l~~~~~l~~~~~~~~~~l~ 283 (546)
T PRK14957 214 LRD------ALSLLDQAISFCG----GELKQAQIKQMLGIIDSEEVYSIINAIIDNDPKAILPAIKNLALTESSADAVLD 283 (546)
T ss_pred HHH------HHHHHHHHHHhcc----CCCCHHHHHHHHccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHH
Confidence 554 9999999885322 1111223334333333 3566777788888998888887777655544443333
Q ss_pred h
Q 007723 576 V 576 (591)
Q Consensus 576 ~ 576 (591)
.
T Consensus 284 ~ 284 (546)
T PRK14957 284 R 284 (546)
T ss_pred H
Confidence 3
No 30
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.87 E-value=1.7e-21 Score=222.86 Aligned_cols=251 Identities=17% Similarity=0.094 Sum_probs=179.6
Q ss_pred hhcccccccCCCCccCCcHHHHHHHHHHHHhcCCCC-CeEecCCCCcHHHHHHHHHHHHHhCCCCcc--c----------
Q 007723 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPVF--L---------- 344 (591)
Q Consensus 278 ~~l~~~~r~~~~~~vvG~~~~i~~l~~~L~~~~~~~-ilL~GppGvGKT~la~~lA~~l~~~~~p~~--~---------- 344 (591)
..|.+||||.+|++||||+..++.|...+...+.+| +||+||+|||||++|+.||+.+.|...+.. +
T Consensus 3 ~~l~~KyRP~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~ 82 (824)
T PRK07764 3 LALYRRYRPATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALA 82 (824)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHH
Confidence 357899999999999999999999999999888777 589999999999999999999976432211 0
Q ss_pred ----cCceEEEeehhhhhccccccchHHHHHHHHHHHHH----hcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhc
Q 007723 345 ----LSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLK 416 (591)
Q Consensus 345 ----~~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~----~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~ 416 (591)
....++++|... ..+ .+.++.+.+.+. ..+..|+||||+|+| +.+.+|.|+
T Consensus 83 ~g~~~~~dv~eidaas------~~~--Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~l-------------t~~a~NaLL 141 (824)
T PRK07764 83 PGGPGSLDVTEIDAAS------HGG--VDDARELRERAFFAPAESRYKIFIIDEAHMV-------------TPQGFNALL 141 (824)
T ss_pred cCCCCCCcEEEecccc------cCC--HHHHHHHHHHHHhchhcCCceEEEEechhhc-------------CHHHHHHHH
Confidence 123344554321 111 122344433332 356789999999999 678899999
Q ss_pred ccccC--CcEEEEecCChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhH
Q 007723 417 PSLGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494 (591)
Q Consensus 417 ~~le~--g~v~lI~att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~ 494 (591)
.+|++ .+++||++|+..+ .+.++|++||..+.|..++.+++.++|..++... ++.++++++..++.++.
T Consensus 142 K~LEEpP~~~~fIl~tt~~~-----kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~E----Gv~id~eal~lLa~~sg 212 (824)
T PRK07764 142 KIVEEPPEHLKFIFATTEPD-----KVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQE----GVPVEPGVLPLVIRAGG 212 (824)
T ss_pred HHHhCCCCCeEEEEEeCChh-----hhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHcC
Confidence 99985 6788888876643 2558899999999999999999999997776654 89999999999999998
Q ss_pred HhhhcCCCcHHHHHHHHHHhhHhhhhhhccchhhhhhhhcCC-hHHHHHHHHHHhhcchHHHHhhchhhHhhhc
Q 007723 495 RYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKP-PDDYWQEIRTVQAMHEVVQGSRLKYDDVVAS 567 (591)
Q Consensus 495 r~i~~~~lp~~ai~lld~a~a~~~~~~~~~~~~~~i~~l~~~-~~~~~~~~~~~~~~~d~~~a~~~~~~~~~~~ 567 (591)
+.+. .++.+||+.++... ........+.++... .....+...+++..+|...+..+.++..+.+
T Consensus 213 GdlR------~Al~eLEKLia~~~---~~~IT~e~V~allg~~~~~~I~~lidAL~~~D~a~al~~l~~Li~~G 277 (824)
T PRK07764 213 GSVR------DSLSVLDQLLAGAG---PEGVTYERAVALLGVTDSALIDEAVDALAAGDGAALFGTVDRVIEAG 277 (824)
T ss_pred CCHH------HHHHHHHHHHhhcC---CCCCCHHHHHHHhcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 7654 48889988774311 111111223333333 3335666667777777777776666555443
No 31
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.87 E-value=2.7e-21 Score=205.02 Aligned_cols=253 Identities=17% Similarity=0.086 Sum_probs=184.4
Q ss_pred hhcccccccCCCCccCCcHHHHHHHHHHHHhcCCCCC-eEecCCCCcHHHHHHHHHHHHHhCCCC--cccc---------
Q 007723 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP-ILLGESGVGKTAIAEGLAIRIVQAEVP--VFLL--------- 345 (591)
Q Consensus 278 ~~l~~~~r~~~~~~vvG~~~~i~~l~~~L~~~~~~~i-lL~GppGvGKT~la~~lA~~l~~~~~p--~~~~--------- 345 (591)
..|++||||.+|++++||++.++.+...+...+.+|. +|+||+|+|||++|+.+|+.+.+.... ....
T Consensus 4 ~~l~~kyrP~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~ 83 (363)
T PRK14961 4 QILARKWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIE 83 (363)
T ss_pred HHHHHHhCCCchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHh
Confidence 5689999999999999999999999999888766665 899999999999999999998643211 0000
Q ss_pred ---CceEEEeehhhhhccccccchHHHHHHHHHHHHHh----cCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhccc
Q 007723 346 ---SKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPS 418 (591)
Q Consensus 346 ---~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~~----~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~ 418 (591)
...+++++.+. . . ..+.++.+++.+.. .+..|+||||+|.+ +...+|.|+..
T Consensus 84 ~~~~~d~~~~~~~~------~-~-~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l-------------~~~a~naLLk~ 142 (363)
T PRK14961 84 KGLCLDLIEIDAAS------R-T-KVEEMREILDNIYYSPSKSRFKVYLIDEVHML-------------SRHSFNALLKT 142 (363)
T ss_pred cCCCCceEEecccc------c-C-CHHHHHHHHHHHhcCcccCCceEEEEEChhhc-------------CHHHHHHHHHH
Confidence 01334433211 0 1 11235556555432 34579999999999 55678888888
Q ss_pred ccC--CcEEEEecCChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHh
Q 007723 419 LGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (591)
Q Consensus 419 le~--g~v~lI~att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~ 496 (591)
++. +.+.+|++|+... .+.+++.+||..+.+.+++.+++.++|..++.+. ++.+++++++.++..+.+.
T Consensus 143 lEe~~~~~~fIl~t~~~~-----~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~----g~~i~~~al~~ia~~s~G~ 213 (363)
T PRK14961 143 LEEPPQHIKFILATTDVE-----KIPKTILSRCLQFKLKIISEEKIFNFLKYILIKE----SIDTDEYALKLIAYHAHGS 213 (363)
T ss_pred HhcCCCCeEEEEEcCChH-----hhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHcCCC
Confidence 884 5677777776532 3668999999999999999999999998877765 8899999999999998765
Q ss_pred hhcCCCcHHHHHHHHHHhhHhhhhhhccchhhhhhh-hcCChHHHHHHHHHHhhcchHHHHhhchhhHhhhccCC
Q 007723 497 ISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCI-LSKPPDDYWQEIRTVQAMHEVVQGSRLKYDDVVASMGD 570 (591)
Q Consensus 497 i~~~~lp~~ai~lld~a~a~~~~~~~~~~~~~~i~~-l~~~~~~~~~~~~~~~~~~d~~~a~~~~~~~~~~~~~~ 570 (591)
++.++++++.+++. +......+.+.. +....+...+....++..+|..++..+.++..+.+.+.
T Consensus 214 ------~R~al~~l~~~~~~----~~~~It~~~v~~~l~~~~~~~i~~l~~ai~~~~~~~~~~~~~~l~~~g~~~ 278 (363)
T PRK14961 214 ------MRDALNLLEHAINL----GKGNINIKNVTDMLGLLNEKQSFLLTDALLKKDSKKTMLLLNKISSIGIEW 278 (363)
T ss_pred ------HHHHHHHHHHHHHh----cCCCCCHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCH
Confidence 45599999988753 111122233433 44445557777888999999999999887776544333
No 32
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.87 E-value=3.1e-21 Score=208.09 Aligned_cols=194 Identities=26% Similarity=0.356 Sum_probs=154.5
Q ss_pred hcccccccCCCCccCCcHHHHHH---HHHHHHhcCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehh
Q 007723 279 DLTARASEELIDPVIGRETEIQR---IIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMG 355 (591)
Q Consensus 279 ~l~~~~r~~~~~~vvG~~~~i~~---l~~~L~~~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~ 355 (591)
||++++||.+|+++|||++.+.. +..++.....++++|+||||||||++|+.+++.+ +..++.++..
T Consensus 1 pla~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~----------~~~~~~l~a~ 70 (413)
T PRK13342 1 PLAERMRPKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT----------DAPFEALSAV 70 (413)
T ss_pred ChhhhhCCCCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEecc
Confidence 68999999999999999999776 8888888888899999999999999999999976 4456665542
Q ss_pred hhhccccccchHHHHHHHHHHHHH----hcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCCcEEEEecCC
Q 007723 356 LLMAGAKERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTT 431 (591)
Q Consensus 356 ~l~~g~~~~g~~~~~i~~i~~~~~----~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g~v~lI~att 431 (591)
. .+ ...++.+++.+. ...+.||||||+|.+ ....++.|++.++.+.+++|++||
T Consensus 71 ~--~~-------~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l-------------~~~~q~~LL~~le~~~iilI~att 128 (413)
T PRK13342 71 T--SG-------VKDLREVIEEARQRRSAGRRTILFIDEIHRF-------------NKAQQDALLPHVEDGTITLIGATT 128 (413)
T ss_pred c--cc-------HHHHHHHHHHHHHhhhcCCceEEEEechhhh-------------CHHHHHHHHHHhhcCcEEEEEeCC
Confidence 1 11 112344444432 236789999999999 567788999999999999999988
Q ss_pred hhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHhhcCC-CCcHHHHHHHHHHhHHhhhcCCCcHHHHHHH
Q 007723 432 QDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNC-KFTLEAINAAVHLSARYISDRYLPDKAIDLV 510 (591)
Q Consensus 432 ~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i-~i~~~al~~l~~~s~r~i~~~~lp~~ai~ll 510 (591)
.+. .+.++++|.+||..+.+.+++.++...+|...+..... ++ .+++++++.+++++.+. +..++++|
T Consensus 129 ~n~---~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~--~~i~i~~~al~~l~~~s~Gd------~R~aln~L 197 (413)
T PRK13342 129 ENP---SFEVNPALLSRAQVFELKPLSEEDIEQLLKRALEDKER--GLVELDDEALDALARLANGD------ARRALNLL 197 (413)
T ss_pred CCh---hhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHHhhc--CCCCCCHHHHHHHHHhCCCC------HHHHHHHH
Confidence 765 35678999999999999999999999999887766532 54 89999999999988655 44577777
Q ss_pred HHHhh
Q 007723 511 DEAGS 515 (591)
Q Consensus 511 d~a~a 515 (591)
+.++.
T Consensus 198 e~~~~ 202 (413)
T PRK13342 198 ELAAL 202 (413)
T ss_pred HHHHH
Confidence 77653
No 33
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.86 E-value=6.2e-21 Score=183.95 Aligned_cols=193 Identities=23% Similarity=0.310 Sum_probs=150.1
Q ss_pred ccccccCCCCccCCcHHHHHHHH---HHHHh------cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEE
Q 007723 281 TARASEELIDPVIGRETEIQRII---QILCR------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMS 351 (591)
Q Consensus 281 ~~~~r~~~~~~vvG~~~~i~~l~---~~L~~------~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ 351 (591)
.+..+.-+|+++|||++..+.+. +.|.. ..+.|+|||||||||||++|+++|.+. +.+++.
T Consensus 112 ~e~~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~----------kvp~l~ 181 (368)
T COG1223 112 REIISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA----------KVPLLL 181 (368)
T ss_pred hhhhccccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc----------CCceEE
Confidence 34556678999999998877644 34443 345899999999999999999999877 567788
Q ss_pred eehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhccccc----CCcEEEE
Q 007723 352 LDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG----RGELQCI 427 (591)
Q Consensus 352 ld~~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le----~g~v~lI 427 (591)
+....++ ..+.|+-..+++.+++.+.+..++|+||||+|.+.-.+.+++- .+-..++.|+|+.-|. +..++.|
T Consensus 182 vkat~li--GehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQel-RGDVsEiVNALLTelDgi~eneGVvtI 258 (368)
T COG1223 182 VKATELI--GEHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQEL-RGDVSEIVNALLTELDGIKENEGVVTI 258 (368)
T ss_pred echHHHH--HHHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHh-cccHHHHHHHHHHhccCcccCCceEEE
Confidence 8888877 3578999999999999999999999999999998644443221 1224577888887664 4568999
Q ss_pred ecCChhHHHhhhcccHHHHccCc-ceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHh
Q 007723 428 ASTTQDEHRTQFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (591)
Q Consensus 428 ~att~~e~~~~~~~d~aL~~Rf~-~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~ 496 (591)
++||..+ -+|+++++||. -|.|..|+.+++..||+..+.++ .+.++-. +++++..+.++
T Consensus 259 aaTN~p~-----~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~----Plpv~~~-~~~~~~~t~g~ 318 (368)
T COG1223 259 AATNRPE-----LLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKF----PLPVDAD-LRYLAAKTKGM 318 (368)
T ss_pred eecCChh-----hcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhC----CCccccC-HHHHHHHhCCC
Confidence 9999875 47899999998 59999999999999997666654 5555444 67777766544
No 34
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=4e-21 Score=206.53 Aligned_cols=201 Identities=22% Similarity=0.312 Sum_probs=162.4
Q ss_pred cCCCCccCCcHHHHHHHHHHHHh-------------cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEe
Q 007723 286 EELIDPVIGRETEIQRIIQILCR-------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSL 352 (591)
Q Consensus 286 ~~~~~~vvG~~~~i~~l~~~L~~-------------~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~l 352 (591)
+-+|+++=|.++..+.+.+.+.- ....+||||||||||||++|+++|.+. ++.|+.+
T Consensus 430 ~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~----------~~nFlsv 499 (693)
T KOG0730|consen 430 NVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEA----------GMNFLSV 499 (693)
T ss_pred CCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhh----------cCCeeec
Confidence 34677888888777777654422 245789999999999999999999988 7888999
Q ss_pred ehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhccccc----CCcEEEEe
Q 007723 353 DMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG----RGELQCIA 428 (591)
Q Consensus 353 d~~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le----~g~v~lI~ 428 (591)
...+++ .+|.|+.|..++.+|+.+++..++|+|+||||.+.+.++ |+++ +.+..+.+.|+..|. ..+|.+|+
T Consensus 500 kgpEL~--sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~-g~~~-~v~~RVlsqLLtEmDG~e~~k~V~ViA 575 (693)
T KOG0730|consen 500 KGPELF--SKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRG-GSSS-GVTDRVLSQLLTEMDGLEALKNVLVIA 575 (693)
T ss_pred cCHHHH--HHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccC-CCcc-chHHHHHHHHHHHcccccccCcEEEEe
Confidence 888888 578999999999999999999999999999999988765 3332 445667777777664 45899999
Q ss_pred cCChhHHHhhhcccHHHHc--cCc-ceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHH-HHHHHHHHhHHhhhcCCCcH
Q 007723 429 STTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLE-AINAAVHLSARYISDRYLPD 504 (591)
Q Consensus 429 att~~e~~~~~~~d~aL~~--Rf~-~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~-al~~l~~~s~r~i~~~~lp~ 504 (591)
+||.++ .+|++|.| ||+ .|+|+.|+.+.+.+||+...+ ++.++++ .++.|++.+.+|-..
T Consensus 576 ATNRpd-----~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~k------kmp~~~~vdl~~La~~T~g~SGA----- 639 (693)
T KOG0730|consen 576 ATNRPD-----MIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAK------KMPFSEDVDLEELAQATEGYSGA----- 639 (693)
T ss_pred ccCChh-----hcCHHHcCCcccceeEeecCccHHHHHHHHHHHHh------cCCCCccccHHHHHHHhccCChH-----
Confidence 999975 68999999 998 599999999999999977665 5567777 488999998887433
Q ss_pred HHHHHHHHHhhH
Q 007723 505 KAIDLVDEAGSR 516 (591)
Q Consensus 505 ~ai~lld~a~a~ 516 (591)
....+..+|+..
T Consensus 640 el~~lCq~A~~~ 651 (693)
T KOG0730|consen 640 EIVAVCQEAALL 651 (693)
T ss_pred HHHHHHHHHHHH
Confidence 456777788743
No 35
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.86 E-value=4.3e-21 Score=211.64 Aligned_cols=259 Identities=17% Similarity=0.134 Sum_probs=191.5
Q ss_pred hhcccccccCCCCccCCcHHHHHHHHHHHHhcCCCCC-eEecCCCCcHHHHHHHHHHHHHhCCCCc--ccc---------
Q 007723 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP-ILLGESGVGKTAIAEGLAIRIVQAEVPV--FLL--------- 345 (591)
Q Consensus 278 ~~l~~~~r~~~~~~vvG~~~~i~~l~~~L~~~~~~~i-lL~GppGvGKT~la~~lA~~l~~~~~p~--~~~--------- 345 (591)
..|++||||.+|++++|+++.++.|...+...+.+|. ||+||+|+|||++|+.+|+.+.+..... ...
T Consensus 4 ~~l~~k~rP~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~ 83 (527)
T PRK14969 4 QVLARKWRPKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEID 83 (527)
T ss_pred HHHHHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHh
Confidence 3588999999999999999999999999988777665 8999999999999999999996632110 000
Q ss_pred ---CceEEEeehhhhhccccccchHHHHHHHHHHHHHh----cCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhccc
Q 007723 346 ---SKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPS 418 (591)
Q Consensus 346 ---~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~~----~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~ 418 (591)
...++++|.+. ..+ .+.++.+++.+.. .+..|+||||+|.| +...+|.|+..
T Consensus 84 ~~~~~d~~ei~~~~------~~~--vd~ir~l~~~~~~~p~~~~~kVvIIDEad~l-------------s~~a~naLLK~ 142 (527)
T PRK14969 84 SGRFVDLIEVDAAS------NTQ--VDAMRELLDNAQYAPTRGRFKVYIIDEVHML-------------SKSAFNAMLKT 142 (527)
T ss_pred cCCCCceeEeeccc------cCC--HHHHHHHHHHHhhCcccCCceEEEEcCcccC-------------CHHHHHHHHHH
Confidence 11344444321 111 2335666665543 34679999999999 56788999999
Q ss_pred ccC--CcEEEEecCChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHh
Q 007723 419 LGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (591)
Q Consensus 419 le~--g~v~lI~att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~ 496 (591)
+++ +.+.+|++||... .+.+++++||..+.|..++.+++...|..++.+. ++.++++++..+++.+.+.
T Consensus 143 LEepp~~~~fIL~t~d~~-----kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~e----gi~~~~~al~~la~~s~Gs 213 (527)
T PRK14969 143 LEEPPEHVKFILATTDPQ-----KIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQE----NIPFDATALQLLARAAAGS 213 (527)
T ss_pred HhCCCCCEEEEEEeCChh-----hCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHcCCC
Confidence 986 5788888887643 2446799999999999999999999998877654 8999999999999998866
Q ss_pred hhcCCCcHHHHHHHHHHhhHhhhhhhccchhhhhhhhcCChHH-HHHHHHHHhhcchHHHHhhchhhHhhhccCCCcchh
Q 007723 497 ISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDD-YWQEIRTVQAMHEVVQGSRLKYDDVVASMGDTSEIV 575 (591)
Q Consensus 497 i~~~~lp~~ai~lld~a~a~~~~~~~~~~~~~~i~~l~~~~~~-~~~~~~~~~~~~d~~~a~~~~~~~~~~~~~~~~~~~ 575 (591)
++ .++.++|.+++. +........+..+....+. ..+....++..+|...+..+.++..+.+.++...+.
T Consensus 214 lr------~al~lldqai~~----~~~~I~~~~v~~~~~~~~~~~i~~ll~al~~~~~~~~l~~~~~l~~~~~~~~~~l~ 283 (527)
T PRK14969 214 MR------DALSLLDQAIAY----GGGTVNESEVRAMLGAIDQDYLFALLEALLAQDGAALLAIADAMEERSLSFDAALQ 283 (527)
T ss_pred HH------HHHHHHHHHHHh----cCCCcCHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHH
Confidence 54 599999999863 2222233445555554444 566777888899999998888887766655544444
Q ss_pred h
Q 007723 576 V 576 (591)
Q Consensus 576 ~ 576 (591)
+
T Consensus 284 ~ 284 (527)
T PRK14969 284 D 284 (527)
T ss_pred H
Confidence 4
No 36
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=8.1e-21 Score=192.34 Aligned_cols=218 Identities=20% Similarity=0.258 Sum_probs=158.0
Q ss_pred hhchhcccccccCCCCccCCcHHHHHHHHHHHH------------hcCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCc
Q 007723 275 QFCVDLTARASEELIDPVIGRETEIQRIIQILC------------RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPV 342 (591)
Q Consensus 275 ~~~~~l~~~~r~~~~~~vvG~~~~i~~l~~~L~------------~~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~ 342 (591)
....++...-..-++++|.|..+.++-|.+.+. ++.-.++|++||||||||.||+++|.++
T Consensus 197 ~lerdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc------- 269 (491)
T KOG0738|consen 197 ALERDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATEC------- 269 (491)
T ss_pred HHHHHHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhh-------
Confidence 344555555555688999999988888777542 1233689999999999999999999988
Q ss_pred cccCceEEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhccccc--
Q 007723 343 FLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG-- 420 (591)
Q Consensus 343 ~~~~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le-- 420 (591)
+..|+.+..+.+. .+|+|+.|+.++-+|+-++...+.+|||||||.|+..+... +..+.+..+-+-|+..|.
T Consensus 270 ---~tTFFNVSsstlt--SKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s-~EHEaSRRvKsELLvQmDG~ 343 (491)
T KOG0738|consen 270 ---GTTFFNVSSSTLT--SKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGS-SEHEASRRVKSELLVQMDGV 343 (491)
T ss_pred ---cCeEEEechhhhh--hhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCc-cchhHHHHHHHHHHHHhhcc
Confidence 6778887766665 67999999999999999988889999999999998875442 222344445555554442
Q ss_pred -----CCc-EEEEecCChhHHHhhhcccHHHHccCc-ceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHH-HHHHHHHH
Q 007723 421 -----RGE-LQCIASTTQDEHRTQFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLE-AINAAVHL 492 (591)
Q Consensus 421 -----~g~-v~lI~att~~e~~~~~~~d~aL~~Rf~-~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~-al~~l~~~ 492 (591)
..+ |+|+++||. .+++|.+|+|||. .|+|+.|+.+.+..+|+..+. .+..+++ .++.+++.
T Consensus 344 ~~t~e~~k~VmVLAATN~-----PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~------~~~~~~~~~~~~lae~ 412 (491)
T KOG0738|consen 344 QGTLENSKVVMVLAATNF-----PWDIDEALRRRLEKRIYIPLPDAEARSALIKILLR------SVELDDPVNLEDLAER 412 (491)
T ss_pred ccccccceeEEEEeccCC-----CcchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhc------cccCCCCccHHHHHHH
Confidence 223 445555555 3789999999998 599999999999999876665 3344443 37888998
Q ss_pred hHHhhhcCCCcHHHHHHHHHHhhHhhhhhh
Q 007723 493 SARYISDRYLPDKAIDLVDEAGSRAHIELF 522 (591)
Q Consensus 493 s~r~i~~~~lp~~ai~lld~a~a~~~~~~~ 522 (591)
+.+|-.+ -|..+..-++...++..
T Consensus 413 ~eGySGa------DI~nvCreAsm~~mRR~ 436 (491)
T KOG0738|consen 413 SEGYSGA------DITNVCREASMMAMRRK 436 (491)
T ss_pred hcCCChH------HHHHHHHHHHHHHHHHH
Confidence 8888544 34444444444455533
No 37
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.85 E-value=4.9e-21 Score=181.89 Aligned_cols=256 Identities=13% Similarity=0.210 Sum_probs=194.4
Q ss_pred HHHhhchhcccccccCCCCccCCcHHHHHHHHHHHHhcCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEE
Q 007723 272 ALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMS 351 (591)
Q Consensus 272 ~l~~~~~~l~~~~r~~~~~~vvG~~~~i~~l~~~L~~~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ 351 (591)
.-.+|..+|.+||||..+.++||.++.+.++..+...++.+|++|.||||+||||-+..||+++..... ...+.+
T Consensus 9 ~~~~~~l~wVeKYrP~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~-----ke~vLE 83 (333)
T KOG0991|consen 9 KSDKYQLPWVEKYRPSVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSY-----KEAVLE 83 (333)
T ss_pred ccccccchHHHhhCchHHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhh-----hhHhhh
Confidence 345677789999999999999999999999999999999999999999999999999999999864321 223455
Q ss_pred eehhhhhccccccc--hHHHHHHHHHHHHHh---cCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhccccc--CCcE
Q 007723 352 LDMGLLMAGAKERG--ELEARVTTLISEIQK---SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG--RGEL 424 (591)
Q Consensus 352 ld~~~l~~g~~~~g--~~~~~i~~i~~~~~~---~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le--~g~v 424 (591)
++.+. .+| ....+++.+...--. ....|+++||+|.+ ...+|.+|+..|+ ....
T Consensus 84 LNASd------eRGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSM-------------T~gAQQAlRRtMEiyS~tt 144 (333)
T KOG0991|consen 84 LNASD------ERGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSM-------------TAGAQQALRRTMEIYSNTT 144 (333)
T ss_pred ccCcc------ccccHHHHHHHHHHHHhhccCCCCceeEEEeeccchh-------------hhHHHHHHHHHHHHHcccc
Confidence 55443 334 334444443332111 34679999999999 5567889999887 5667
Q ss_pred EEEecCChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhhhcCCCcH
Q 007723 425 QCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPD 504 (591)
Q Consensus 425 ~lI~att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i~~~~lp~ 504 (591)
++..++|..+ +. -.++.+||..+++...+..++...|..+.... ++.++++.+++++..+++.++.
T Consensus 145 RFalaCN~s~--KI---iEPIQSRCAiLRysklsd~qiL~Rl~~v~k~E----kv~yt~dgLeaiifta~GDMRQ----- 210 (333)
T KOG0991|consen 145 RFALACNQSE--KI---IEPIQSRCAILRYSKLSDQQILKRLLEVAKAE----KVNYTDDGLEAIIFTAQGDMRQ----- 210 (333)
T ss_pred hhhhhhcchh--hh---hhhHHhhhHhhhhcccCHHHHHHHHHHHHHHh----CCCCCcchHHHhhhhccchHHH-----
Confidence 8888888765 33 36899999999999999999888888877765 8999999999999999988776
Q ss_pred HHHHHHHHHhhHhhhhhhccchhhhhhhhcCChHH-HHHHHHHHhhcchHHHHhhchhhHhhhccCCC
Q 007723 505 KAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDD-YWQEIRTVQAMHEVVQGSRLKYDDVVASMGDT 571 (591)
Q Consensus 505 ~ai~lld~a~a~~~~~~~~~~~~~~i~~l~~~~~~-~~~~~~~~~~~~d~~~a~~~~~~~~~~~~~~~ 571 (591)
+++.|....+ ++.....+.|-.+...|.- .......++...++++|.+..++.-+.+.++.
T Consensus 211 -alNnLQst~~-----g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~~~~~~~A~~il~~lw~lgysp~ 272 (333)
T KOG0991|consen 211 -ALNNLQSTVN-----GFGLVNQENVFKVCDEPHPLLVKKMLQACLKRNIDEALKILAELWKLGYSPE 272 (333)
T ss_pred -HHHHHHHHhc-----cccccchhhhhhccCCCChHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHH
Confidence 7888866653 4444333344445555444 55566677888899999999888777666553
No 38
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.85 E-value=1.4e-20 Score=209.89 Aligned_cols=253 Identities=16% Similarity=0.117 Sum_probs=188.4
Q ss_pred hhcccccccCCCCccCCcHHHHHHHHHHHHhcCCCC-CeEecCCCCcHHHHHHHHHHHHHhCCCCc--ccc---------
Q 007723 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPV--FLL--------- 345 (591)
Q Consensus 278 ~~l~~~~r~~~~~~vvG~~~~i~~l~~~L~~~~~~~-ilL~GppGvGKT~la~~lA~~l~~~~~p~--~~~--------- 345 (591)
.-|+++|||.+|+++||+++.++.|...+...+.+| +||+||+|+|||++|+.+++.+.+...+. ...
T Consensus 4 ~~l~~k~RP~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~ 83 (576)
T PRK14965 4 LVLARKYRPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEIT 83 (576)
T ss_pred HHHHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHh
Confidence 347899999999999999999999999998877666 48999999999999999999997643210 000
Q ss_pred ---CceEEEeehhhhhccccccchHHHHHHHHHHHHHh----cCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhccc
Q 007723 346 ---SKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPS 418 (591)
Q Consensus 346 ---~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~~----~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~ 418 (591)
...++++|.. ...+ .+.++.+++.+.. ....|+||||+|+| +...+|.|+..
T Consensus 84 ~g~~~d~~eid~~------s~~~--v~~ir~l~~~~~~~p~~~~~KVvIIdev~~L-------------t~~a~naLLk~ 142 (576)
T PRK14965 84 EGRSVDVFEIDGA------SNTG--VDDIRELRENVKYLPSRSRYKIFIIDEVHML-------------STNAFNALLKT 142 (576)
T ss_pred cCCCCCeeeeecc------CccC--HHHHHHHHHHHHhccccCCceEEEEEChhhC-------------CHHHHHHHHHH
Confidence 1224444422 1111 2235555555532 45679999999999 66789999999
Q ss_pred ccC--CcEEEEecCChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHh
Q 007723 419 LGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (591)
Q Consensus 419 le~--g~v~lI~att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~ 496 (591)
|++ +++++|++||... .+.+++++||..+.|..++.+++...|..++.+. ++.++++++..+++.+.+.
T Consensus 143 LEepp~~~~fIl~t~~~~-----kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~e----gi~i~~~al~~la~~a~G~ 213 (576)
T PRK14965 143 LEEPPPHVKFIFATTEPH-----KVPITILSRCQRFDFRRIPLQKIVDRLRYIADQE----GISISDAALALVARKGDGS 213 (576)
T ss_pred HHcCCCCeEEEEEeCChh-----hhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHh----CCCCCHHHHHHHHHHcCCC
Confidence 985 5778888777642 3558999999999999999999999998877765 8999999999999999877
Q ss_pred hhcCCCcHHHHHHHHHHhhHhhhhhhccchhhhhhhhcCChHH-HHHHHHHHhhcchHHHHhhchhhHhhhccCC
Q 007723 497 ISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDD-YWQEIRTVQAMHEVVQGSRLKYDDVVASMGD 570 (591)
Q Consensus 497 i~~~~lp~~ai~lld~a~a~~~~~~~~~~~~~~i~~l~~~~~~-~~~~~~~~~~~~d~~~a~~~~~~~~~~~~~~ 570 (591)
++. ++.+||.+++... .....+.+..+....+. ..+....++..+|...+..+.++....+.+.
T Consensus 214 lr~------al~~Ldqliay~g----~~It~edV~~llG~~~~~~l~~ll~al~~~d~~~al~~l~~l~~~G~~~ 278 (576)
T PRK14965 214 MRD------SLSTLDQVLAFCG----DAVGDDDVAELLGVVDRRLLLDISAAVFGRDTRALLEIVERVDEFGYNM 278 (576)
T ss_pred HHH------HHHHHHHHHHhcc----CCCCHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 654 8999998876432 11222345555444443 6777788899999999988887776655443
No 39
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.85 E-value=2.3e-20 Score=211.28 Aligned_cols=201 Identities=25% Similarity=0.336 Sum_probs=154.0
Q ss_pred hhcccccccCCCCccCCcHHHHH---HHHHHHHhcCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeeh
Q 007723 278 VDLTARASEELIDPVIGRETEIQ---RIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (591)
Q Consensus 278 ~~l~~~~r~~~~~~vvG~~~~i~---~l~~~L~~~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~ 354 (591)
.+|.+++||.+|++++|+++.+. .+..++.....++++|+|||||||||+|+++++.+ +..++.++.
T Consensus 16 ~PLaek~RP~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~----------~~~f~~lna 85 (725)
T PRK13341 16 APLADRLRPRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT----------RAHFSSLNA 85 (725)
T ss_pred CChHHhcCCCcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh----------cCcceeehh
Confidence 38999999999999999999884 57777777778899999999999999999999876 334445443
Q ss_pred hhhhccccccchHHHHHHHHHHHHHh-cCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCCcEEEEecCChh
Q 007723 355 GLLMAGAKERGELEARVTTLISEIQK-SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQD 433 (591)
Q Consensus 355 ~~l~~g~~~~g~~~~~i~~i~~~~~~-~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g~v~lI~att~~ 433 (591)
. ..+.. +..+.+..+...... ....+|||||||.+ ....++.|++.++.+.+++|++||++
T Consensus 86 ~--~~~i~---dir~~i~~a~~~l~~~~~~~IL~IDEIh~L-------------n~~qQdaLL~~lE~g~IiLI~aTTen 147 (725)
T PRK13341 86 V--LAGVK---DLRAEVDRAKERLERHGKRTILFIDEVHRF-------------NKAQQDALLPWVENGTITLIGATTEN 147 (725)
T ss_pred h--hhhhH---HHHHHHHHHHHHhhhcCCceEEEEeChhhC-------------CHHHHHHHHHHhcCceEEEEEecCCC
Confidence 2 12211 222222222111111 34679999999999 56678899999999999999999887
Q ss_pred HHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHh---hcCCCCcHHHHHHHHHHhHHhhhcCCCcHHHHHHH
Q 007723 434 EHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEA---HHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLV 510 (591)
Q Consensus 434 e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~---~~~i~i~~~al~~l~~~s~r~i~~~~lp~~ai~ll 510 (591)
. .+.+++++.+||..+.+++++.+++..+++..+..+.. ..++.+++++++.+++++.+.++. ++++|
T Consensus 148 p---~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~------lln~L 218 (725)
T PRK13341 148 P---YFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARS------LLNAL 218 (725)
T ss_pred h---HhhhhhHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHH------HHHHH
Confidence 5 34577999999999999999999999999988775443 236899999999999998766544 77777
Q ss_pred HHHhh
Q 007723 511 DEAGS 515 (591)
Q Consensus 511 d~a~a 515 (591)
+.++.
T Consensus 219 e~a~~ 223 (725)
T PRK13341 219 ELAVE 223 (725)
T ss_pred HHHHH
Confidence 77653
No 40
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.85 E-value=4.1e-20 Score=205.26 Aligned_cols=252 Identities=17% Similarity=0.167 Sum_probs=185.4
Q ss_pred hhcccccccCCCCccCCcHHHHHHHHHHHHhcCCCC-CeEecCCCCcHHHHHHHHHHHHHhCCCCcc-------------
Q 007723 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPVF------------- 343 (591)
Q Consensus 278 ~~l~~~~r~~~~~~vvG~~~~i~~l~~~L~~~~~~~-ilL~GppGvGKT~la~~lA~~l~~~~~p~~------------- 343 (591)
..|+++|||.+|++++||++.++.|...+...+.+| +||+||+|+|||++|+.+|+.+.+...+..
T Consensus 4 ~al~~k~rP~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~ 83 (559)
T PRK05563 4 QALYRKWRPQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAIT 83 (559)
T ss_pred HHHHHHhCCCcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHh
Confidence 457899999999999999999999999998876666 578999999999999999999876432211
Q ss_pred -ccCceEEEeehhhhhccccccchHHHHHHHHHHHHHh----cCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhccc
Q 007723 344 -LLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPS 418 (591)
Q Consensus 344 -~~~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~~----~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~ 418 (591)
.....++++|.+ ...| .+.++.+++.+.. .+..|+||||+|.| +...+|.|+..
T Consensus 84 ~g~~~dv~eidaa------s~~~--vd~ir~i~~~v~~~p~~~~~kViIIDE~~~L-------------t~~a~naLLKt 142 (559)
T PRK05563 84 NGSLMDVIEIDAA------SNNG--VDEIRDIRDKVKYAPSEAKYKVYIIDEVHML-------------STGAFNALLKT 142 (559)
T ss_pred cCCCCCeEEeecc------ccCC--HHHHHHHHHHHhhCcccCCeEEEEEECcccC-------------CHHHHHHHHHH
Confidence 012244555532 1122 2335566665542 45789999999999 56688999999
Q ss_pred ccC--CcEEEEecCChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHh
Q 007723 419 LGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (591)
Q Consensus 419 le~--g~v~lI~att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~ 496 (591)
++. .++++|++|+... .+.+++.+||+.+.|..|+.+++..+|+.++.+. ++.+++++++.++..+.+.
T Consensus 143 LEepp~~~ifIlatt~~~-----ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~e----gi~i~~~al~~ia~~s~G~ 213 (559)
T PRK05563 143 LEEPPAHVIFILATTEPH-----KIPATILSRCQRFDFKRISVEDIVERLKYILDKE----GIEYEDEALRLIARAAEGG 213 (559)
T ss_pred hcCCCCCeEEEEEeCChh-----hCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHcCCC
Confidence 985 4677787776542 4668999999999999999999999998877755 8999999999999998765
Q ss_pred hhcCCCcHHHHHHHHHHhhHhhhhhhccchhhhhhhhcCC-hHHHHHHHHHHhhcchHHHHhhchhhHhhhccC
Q 007723 497 ISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKP-PDDYWQEIRTVQAMHEVVQGSRLKYDDVVASMG 569 (591)
Q Consensus 497 i~~~~lp~~ai~lld~a~a~~~~~~~~~~~~~~i~~l~~~-~~~~~~~~~~~~~~~d~~~a~~~~~~~~~~~~~ 569 (591)
++ .++.+|+.+++.. ...... +.+..+... .....+....++..+|...+..+.++....+.+
T Consensus 214 ~R------~al~~Ldq~~~~~---~~~It~-~~V~~vlg~~~~~~i~~l~~al~~~d~~~al~~l~~l~~~g~d 277 (559)
T PRK05563 214 MR------DALSILDQAISFG---DGKVTY-EDALEVTGSVSQEALDDLVDAIVEGDVAKALKILEELLDEGKD 277 (559)
T ss_pred HH------HHHHHHHHHHHhc---cCCCCH-HHHHHHhCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC
Confidence 44 4899999887531 111222 233333333 444667777888899999998887776554433
No 41
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.85 E-value=4e-20 Score=201.67 Aligned_cols=245 Identities=20% Similarity=0.191 Sum_probs=183.0
Q ss_pred hcccccccCCCCccCCcHHHHHHHHHHHHhcCCCCC-eEecCCCCcHHHHHHHHHHHHHhCCCCcc--------------
Q 007723 279 DLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP-ILLGESGVGKTAIAEGLAIRIVQAEVPVF-------------- 343 (591)
Q Consensus 279 ~l~~~~r~~~~~~vvG~~~~i~~l~~~L~~~~~~~i-lL~GppGvGKT~la~~lA~~l~~~~~p~~-------------- 343 (591)
.|++||||.+|++++||+..++.|...+...+.+|. ||+||+|+|||++|+.+++.+.+...+..
T Consensus 3 ~l~~KyRP~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~ 82 (535)
T PRK08451 3 ALALKYRPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALE 82 (535)
T ss_pred cHHHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhh
Confidence 578999999999999999999999999988777766 89999999999999999999876432210
Q ss_pred ccCceEEEeehhhhhccccccchHHHHHHHHHHHHHh----cCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccc
Q 007723 344 LLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL 419 (591)
Q Consensus 344 ~~~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~~----~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~l 419 (591)
.....+++++.. ..+| .+.++.+++.... ....|+||||+|.| +.+++|.|+..|
T Consensus 83 ~~h~dv~eldaa------s~~g--Id~IRelie~~~~~P~~~~~KVvIIDEad~L-------------t~~A~NALLK~L 141 (535)
T PRK08451 83 NRHIDIIEMDAA------SNRG--IDDIRELIEQTKYKPSMARFKIFIIDEVHML-------------TKEAFNALLKTL 141 (535)
T ss_pred cCCCeEEEeccc------cccC--HHHHHHHHHHHhhCcccCCeEEEEEECcccC-------------CHHHHHHHHHHH
Confidence 012334444421 1111 1235555544321 34679999999999 678899999999
Q ss_pred cC--CcEEEEecCChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhh
Q 007723 420 GR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497 (591)
Q Consensus 420 e~--g~v~lI~att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i 497 (591)
+. ..+.+|.+|+.. ..+.+++++||..+++.+++.+++...+..++.+. ++.+++++++.+++.+.+.+
T Consensus 142 EEpp~~t~FIL~ttd~-----~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~E----Gi~i~~~Al~~Ia~~s~Gdl 212 (535)
T PRK08451 142 EEPPSYVKFILATTDP-----LKLPATILSRTQHFRFKQIPQNSIISHLKTILEKE----GVSYEPEALEILARSGNGSL 212 (535)
T ss_pred hhcCCceEEEEEECCh-----hhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHcCCcH
Confidence 85 567777777653 34568999999999999999999999998887765 89999999999999998765
Q ss_pred hcCCCcHHHHHHHHHHhhHhhhhhhccchhhhhhhhcCChH-HHHHHHHHHhhcchHHHHhhchhhH
Q 007723 498 SDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPD-DYWQEIRTVQAMHEVVQGSRLKYDD 563 (591)
Q Consensus 498 ~~~~lp~~ai~lld~a~a~~~~~~~~~~~~~~i~~l~~~~~-~~~~~~~~~~~~~d~~~a~~~~~~~ 563 (591)
+ .++.+||.+++.. . .....+.+.++...++ ........++..+|++.+..+.+..
T Consensus 213 R------~alnlLdqai~~~---~-~~It~~~V~~~lg~~~~~~I~~li~ai~~~d~~~a~~~l~~L 269 (535)
T PRK08451 213 R------DTLTLLDQAIIYC---K-NAITESKVADMLGLLDPSKLEDFFQAILNQDKEKLFELLKEL 269 (535)
T ss_pred H------HHHHHHHHHHHhc---C-CCCCHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 4 4999999988543 1 1112234555555443 3666777788999999998887765
No 42
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.85 E-value=3.6e-20 Score=204.07 Aligned_cols=247 Identities=17% Similarity=0.169 Sum_probs=174.8
Q ss_pred hhcccccccCCCCccCCcHHHHHHHHHHHHhcC-CCCCeEecCCCCcHHHHHHHHHHHHHhCCCCc--cc----------
Q 007723 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRT-KNNPILLGESGVGKTAIAEGLAIRIVQAEVPV--FL---------- 344 (591)
Q Consensus 278 ~~l~~~~r~~~~~~vvG~~~~i~~l~~~L~~~~-~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~--~~---------- 344 (591)
.+|+++|||.+|++|+|++..++.|...+...+ .+++||+||+|||||++|+.||+.+.+...+. .+
T Consensus 4 ~~la~KyRP~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~ 83 (624)
T PRK14959 4 ASLTARYRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVT 83 (624)
T ss_pred chHHHHhCCCCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHh
Confidence 478999999999999999999999999888755 46778999999999999999999997632110 00
Q ss_pred --cCceEEEeehhhhhccccccchHHHHHHHHHHHHH----hcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhccc
Q 007723 345 --LSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPS 418 (591)
Q Consensus 345 --~~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~----~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~ 418 (591)
....++++|.. ...+ .+.++.+.+.+. ..+..|+||||+|.| ..+.+|.|+..
T Consensus 84 ~g~hpDv~eId~a------~~~~--Id~iR~L~~~~~~~p~~g~~kVIIIDEad~L-------------t~~a~naLLk~ 142 (624)
T PRK14959 84 QGMHVDVVEIDGA------SNRG--IDDAKRLKEAIGYAPMEGRYKVFIIDEAHML-------------TREAFNALLKT 142 (624)
T ss_pred cCCCCceEEEecc------cccC--HHHHHHHHHHHHhhhhcCCceEEEEEChHhC-------------CHHHHHHHHHH
Confidence 01234455421 1111 122333333332 245679999999999 66778999999
Q ss_pred ccC--CcEEEEecCChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHh
Q 007723 419 LGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (591)
Q Consensus 419 le~--g~v~lI~att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~ 496 (591)
|++ +.+++|++|+... .+..+|++||..+.|..++.+++..+|..++.+. ++.+++++++.+++++.+.
T Consensus 143 LEEP~~~~ifILaTt~~~-----kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~e----gi~id~eal~lIA~~s~Gd 213 (624)
T PRK14959 143 LEEPPARVTFVLATTEPH-----KFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGRE----GVDYDPAAVRLIARRAAGS 213 (624)
T ss_pred hhccCCCEEEEEecCChh-----hhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHcCCC
Confidence 985 5788888777643 2446899999999999999999999998776654 8999999999999999766
Q ss_pred hhcCCCcHHHHHHHHHHhhHhhhhhhccchhhhhhhhcCChHH-HHHHHHHHhhcchHHHHhhchhhHh
Q 007723 497 ISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDD-YWQEIRTVQAMHEVVQGSRLKYDDV 564 (591)
Q Consensus 497 i~~~~lp~~ai~lld~a~a~~~~~~~~~~~~~~i~~l~~~~~~-~~~~~~~~~~~~d~~~a~~~~~~~~ 564 (591)
++ +++++|+++++. +......+.|..+....+. ..++...++..+|+..+..+..+..
T Consensus 214 lR------~Al~lLeqll~~----g~~~It~d~V~~~lg~~~~e~vfeLl~AL~~~D~~aal~~l~~Ll 272 (624)
T PRK14959 214 VR------DSMSLLGQVLAL----GESRLTIDGARGVLGLAGQELFLRLMEALAAQDCLGVANVVRELL 272 (624)
T ss_pred HH------HHHHHHHHHHHh----cCCCcCHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 54 489999976521 1111222333333333333 4556666777778777777665544
No 43
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.84 E-value=4.7e-20 Score=204.90 Aligned_cols=253 Identities=17% Similarity=0.151 Sum_probs=186.4
Q ss_pred hhcccccccCCCCccCCcHHHHHHHHHHHHhcCCC-CCeEecCCCCcHHHHHHHHHHHHHhCCC-----Cc--cc-----
Q 007723 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKN-NPILLGESGVGKTAIAEGLAIRIVQAEV-----PV--FL----- 344 (591)
Q Consensus 278 ~~l~~~~r~~~~~~vvG~~~~i~~l~~~L~~~~~~-~ilL~GppGvGKT~la~~lA~~l~~~~~-----p~--~~----- 344 (591)
..|.+||||.+|+++|||+..++.|...+...+.+ .+||+||+|+|||++|+.+|+.+.+... |. ..
T Consensus 12 ~~la~KyRP~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~ 91 (598)
T PRK09111 12 RVLARKYRPQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEH 91 (598)
T ss_pred hhHHhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHH
Confidence 56899999999999999999999999999887655 5899999999999999999999876321 10 00
Q ss_pred -------cCceEEEeehhhhhccccccchHHHHHHHHHHHHHh----cCCeEEEEcCcchhhcCCCCCCCCCCccHHHHH
Q 007723 345 -------LSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISN 413 (591)
Q Consensus 345 -------~~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~~----~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n 413 (591)
....++++|... ..| .+.++.+++.+.. ....|+||||+|.| +...+|
T Consensus 92 C~~i~~g~h~Dv~e~~a~s------~~g--vd~IReIie~~~~~P~~a~~KVvIIDEad~L-------------s~~a~n 150 (598)
T PRK09111 92 CQAIMEGRHVDVLEMDAAS------HTG--VDDIREIIESVRYRPVSARYKVYIIDEVHML-------------STAAFN 150 (598)
T ss_pred HHHHhcCCCCceEEecccc------cCC--HHHHHHHHHHHHhchhcCCcEEEEEEChHhC-------------CHHHHH
Confidence 012344444321 111 2235666665543 45789999999999 567799
Q ss_pred hhcccccC--CcEEEEecCChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHH
Q 007723 414 LLKPSLGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVH 491 (591)
Q Consensus 414 ~L~~~le~--g~v~lI~att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~ 491 (591)
.|+..|++ +++.+|++|+... .+.+++++||+.+.+..++.+++...|..++.+. ++.+++++++.+++
T Consensus 151 aLLKtLEePp~~~~fIl~tte~~-----kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~ke----gi~i~~eAl~lIa~ 221 (598)
T PRK09111 151 ALLKTLEEPPPHVKFIFATTEIR-----KVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKE----GVEVEDEALALIAR 221 (598)
T ss_pred HHHHHHHhCCCCeEEEEEeCChh-----hhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHc----CCCCCHHHHHHHHH
Confidence 99999985 5677777776543 2457899999999999999999999998887755 89999999999999
Q ss_pred HhHHhhhcCCCcHHHHHHHHHHhhHhhhhhhccchhhhhhhhcCC-hHHHHHHHHHHhhcchHHHHhhchhhHhhhccCC
Q 007723 492 LSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKP-PDDYWQEIRTVQAMHEVVQGSRLKYDDVVASMGD 570 (591)
Q Consensus 492 ~s~r~i~~~~lp~~ai~lld~a~a~~~~~~~~~~~~~~i~~l~~~-~~~~~~~~~~~~~~~d~~~a~~~~~~~~~~~~~~ 570 (591)
.+.+++.. ++.+|+.+++.. ......+.|.++... .+...+....++..+|+..|..+....-..+.+.
T Consensus 222 ~a~Gdlr~------al~~Ldkli~~g----~g~It~e~V~~llg~~~~~~if~L~~ai~~gd~~~Al~~l~~l~~~G~~p 291 (598)
T PRK09111 222 AAEGSVRD------GLSLLDQAIAHG----AGEVTAEAVRDMLGLADRARVIDLFEALMRGDVAAALAEFRAQYDAGADP 291 (598)
T ss_pred HcCCCHHH------HHHHHHHHHhhc----CCCcCHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCH
Confidence 99877554 899999887531 122222455555544 3345667778899999998887766555544333
No 44
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.84 E-value=9.4e-20 Score=199.41 Aligned_cols=247 Identities=19% Similarity=0.169 Sum_probs=182.5
Q ss_pred cccccccCCCCccCCcHHHHHHHHHHHHhcCCCCC-eEecCCCCcHHHHHHHHHHHHHhCC-CCcc------------cc
Q 007723 280 LTARASEELIDPVIGRETEIQRIIQILCRRTKNNP-ILLGESGVGKTAIAEGLAIRIVQAE-VPVF------------LL 345 (591)
Q Consensus 280 l~~~~r~~~~~~vvG~~~~i~~l~~~L~~~~~~~i-lL~GppGvGKT~la~~lA~~l~~~~-~p~~------------~~ 345 (591)
|.+||||.+|++++||++.++.|...+...+.+|. ||+||||||||++|+++|+.+.+.+ .+.. ..
T Consensus 4 l~~KyRP~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~ 83 (504)
T PRK14963 4 LYQRARPITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGA 83 (504)
T ss_pred HHHhhCCCCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCC
Confidence 67899999999999999999999999988777776 9999999999999999999987522 1100 11
Q ss_pred CceEEEeehhhhhccccccchHHHHHHHHHHHHHh----cCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccC
Q 007723 346 SKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR 421 (591)
Q Consensus 346 ~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~~----~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~ 421 (591)
...+++++... ..+ ...++.+.+.+.. ....|+||||+|.+ +.+.++.|+..++.
T Consensus 84 h~dv~el~~~~------~~~--vd~iR~l~~~~~~~p~~~~~kVVIIDEad~l-------------s~~a~naLLk~LEe 142 (504)
T PRK14963 84 HPDVLEIDAAS------NNS--VEDVRDLREKVLLAPLRGGRKVYILDEAHMM-------------SKSAFNALLKTLEE 142 (504)
T ss_pred CCceEEecccc------cCC--HHHHHHHHHHHhhccccCCCeEEEEECcccc-------------CHHHHHHHHHHHHh
Confidence 22355555321 111 1224444444332 45679999999988 56678888888875
Q ss_pred --CcEEEEecCChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhhhc
Q 007723 422 --GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499 (591)
Q Consensus 422 --g~v~lI~att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i~~ 499 (591)
..+++|.+++... .+.+++.+||..+.|.+|+.+++...|+.++.+. ++.+++++++.+++.+.+.++
T Consensus 143 p~~~t~~Il~t~~~~-----kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~e----gi~i~~~Al~~ia~~s~GdlR- 212 (504)
T PRK14963 143 PPEHVIFILATTEPE-----KMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAE----GREAEPEALQLVARLADGAMR- 212 (504)
T ss_pred CCCCEEEEEEcCChh-----hCChHHhcceEEEEecCCCHHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHcCCCHH-
Confidence 4567777776532 4668999999999999999999999998887765 899999999999999987754
Q ss_pred CCCcHHHHHHHHHHhhHhhhhhhccchhhhhhhhcCC-hHHHHHHHHHHhhcchHHHHhhchhhHhhhc
Q 007723 500 RYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKP-PDDYWQEIRTVQAMHEVVQGSRLKYDDVVAS 567 (591)
Q Consensus 500 ~~lp~~ai~lld~a~a~~~~~~~~~~~~~~i~~l~~~-~~~~~~~~~~~~~~~d~~~a~~~~~~~~~~~ 567 (591)
+++.+|+.+++. +. ....+.|..+... .....+....++..+|+..|..+.++....+
T Consensus 213 -----~aln~Lekl~~~----~~-~It~~~V~~~l~~~~~~~if~Li~al~~~d~~~Al~~l~~Ll~~G 271 (504)
T PRK14963 213 -----DAESLLERLLAL----GT-PVTRKQVEEALGLPPQERLRGIAAALAQGDAAEALSGAAQLYRDG 271 (504)
T ss_pred -----HHHHHHHHHHhc----CC-CCCHHHHHHHHCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 489999987642 11 1222344444444 4447777888999999999999887766554
No 45
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.84 E-value=7.8e-20 Score=200.46 Aligned_cols=251 Identities=17% Similarity=0.162 Sum_probs=181.5
Q ss_pred hhcccccccCCCCccCCcHHHHHHHHHHHHhcCCCC-CeEecCCCCcHHHHHHHHHHHHHhCCCC--ccccC--------
Q 007723 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVP--VFLLS-------- 346 (591)
Q Consensus 278 ~~l~~~~r~~~~~~vvG~~~~i~~l~~~L~~~~~~~-ilL~GppGvGKT~la~~lA~~l~~~~~p--~~~~~-------- 346 (591)
..|+++|||.+|++++||+..++.+...+...+.++ +||+||+|+|||++|+.+|+.+.+.... ..+..
T Consensus 4 ~~~~~KyRP~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~ 83 (605)
T PRK05896 4 ITFYRKYRPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESIN 83 (605)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHH
Confidence 478999999999999999999999999987765554 7899999999999999999999764311 11111
Q ss_pred ----ceEEEeehhhhhccccccchHHHHHHHHHHHHHh----cCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhccc
Q 007723 347 ----KRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPS 418 (591)
Q Consensus 347 ----~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~~----~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~ 418 (591)
..++++|... ..| .+.++.+++.+.. .+..|+||||+|.| +...+|.|+..
T Consensus 84 ~~~h~DiieIdaas------~ig--Vd~IReIi~~~~~~P~~~~~KVIIIDEad~L-------------t~~A~NaLLKt 142 (605)
T PRK05896 84 TNQSVDIVELDAAS------NNG--VDEIRNIIDNINYLPTTFKYKVYIIDEAHML-------------STSAWNALLKT 142 (605)
T ss_pred cCCCCceEEecccc------ccC--HHHHHHHHHHHHhchhhCCcEEEEEechHhC-------------CHHHHHHHHHH
Confidence 2344554321 111 1224555554432 45679999999999 55678999999
Q ss_pred ccC--CcEEEEecCChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHh
Q 007723 419 LGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (591)
Q Consensus 419 le~--g~v~lI~att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~ 496 (591)
|+. +.+++|++|+.. ..+.+++++||+.+.+.+++.+++...|..++.+. ++.+++++++.++.++.+.
T Consensus 143 LEEPp~~tvfIL~Tt~~-----~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~ke----gi~Is~eal~~La~lS~Gd 213 (605)
T PRK05896 143 LEEPPKHVVFIFATTEF-----QKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKE----KIKIEDNAIDKIADLADGS 213 (605)
T ss_pred HHhCCCcEEEEEECCCh-----HhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHcCCc
Confidence 985 467777777653 24568999999999999999999999998877765 8999999999999999876
Q ss_pred hhcCCCcHHHHHHHHHHhhHhhhhhhccchhhhhhhhcCChHH-HHHHHHHHhhcchHHHHhhchhhHhhhcc
Q 007723 497 ISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDD-YWQEIRTVQAMHEVVQGSRLKYDDVVASM 568 (591)
Q Consensus 497 i~~~~lp~~ai~lld~a~a~~~~~~~~~~~~~~i~~l~~~~~~-~~~~~~~~~~~~d~~~a~~~~~~~~~~~~ 568 (591)
++ .|+.+|+..+.... .. .....|.++....+. ..+....++..+|...+..+.++....+.
T Consensus 214 lR------~AlnlLekL~~y~~---~~-It~e~V~ellg~~~~~~Vf~Ll~AI~~kd~~~al~~l~~Ll~~ge 276 (605)
T PRK05896 214 LR------DGLSILDQLSTFKN---SE-IDIEDINKTFGLVDNNKKINLIELIQKNDIEELRNLINELESKGI 276 (605)
T ss_pred HH------HHHHHHHHHHhhcC---CC-CCHHHHHHHhccCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 44 48999998664321 11 112233443333333 45667778889999999888877655443
No 46
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=3e-20 Score=197.02 Aligned_cols=189 Identities=20% Similarity=0.349 Sum_probs=153.2
Q ss_pred cCCCCccCCcHHHHHHHHHHHHh------------cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEee
Q 007723 286 EELIDPVIGRETEIQRIIQILCR------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (591)
Q Consensus 286 ~~~~~~vvG~~~~i~~l~~~L~~------------~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld 353 (591)
.-+|.++=|.+..+..|.+++.. ...+++||+||||||||.||++||.++ +.+|+.+.
T Consensus 186 nv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel----------~vPf~~is 255 (802)
T KOG0733|consen 186 NVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL----------GVPFLSIS 255 (802)
T ss_pred CcchhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc----------CCceEeec
Confidence 34688999999988888776532 234789999999999999999999998 77899999
Q ss_pred hhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhccccc--------CCcEE
Q 007723 354 MGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG--------RGELQ 425 (591)
Q Consensus 354 ~~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le--------~g~v~ 425 (591)
..++++| +.|+.|++++++|+++....++|+||||||.+.+++..++ ++....+...|+..|. ...|.
T Consensus 256 ApeivSG--vSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aq--reMErRiVaQLlt~mD~l~~~~~~g~~Vl 331 (802)
T KOG0733|consen 256 APEIVSG--VSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQ--REMERRIVAQLLTSMDELSNEKTKGDPVL 331 (802)
T ss_pred chhhhcc--cCcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHH--HHHHHHHHHHHHHhhhcccccccCCCCeE
Confidence 9999987 5689999999999999999999999999999987765421 1223345556666654 13589
Q ss_pred EEecCChhHHHhhhcccHHHHc--cCcc-eeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHH-HHHHHHHhHHhhhc
Q 007723 426 CIASTTQDEHRTQFEKDKALAR--RFQP-VLISEPSQEDAVRILLGLREKYEAHHNCKFTLEA-INAAVHLSARYISD 499 (591)
Q Consensus 426 lI~att~~e~~~~~~~d~aL~~--Rf~~-i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~a-l~~l~~~s~r~i~~ 499 (591)
+|||||.++ .+|++|+| ||+. |.+..|+...+.+||+.+++.+ .++.+. ...|++++.+|+..
T Consensus 332 VIgATnRPD-----slDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~l------rl~g~~d~~qlA~lTPGfVGA 398 (802)
T KOG0733|consen 332 VIGATNRPD-----SLDPALRRAGRFDREICLGVPSETAREEILRIICRGL------RLSGDFDFKQLAKLTPGFVGA 398 (802)
T ss_pred EEecCCCCc-----ccCHHHhccccccceeeecCCchHHHHHHHHHHHhhC------CCCCCcCHHHHHhcCCCccch
Confidence 999999975 68999999 9985 9999999999999999988854 333322 68899999999866
No 47
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.83 E-value=1.3e-19 Score=200.69 Aligned_cols=252 Identities=18% Similarity=0.130 Sum_probs=182.9
Q ss_pred hhcccccccCCCCccCCcHHHHHHHHHHHHhcCCCC-CeEecCCCCcHHHHHHHHHHHHHhCCCCcc--c----------
Q 007723 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPVF--L---------- 344 (591)
Q Consensus 278 ~~l~~~~r~~~~~~vvG~~~~i~~l~~~L~~~~~~~-ilL~GppGvGKT~la~~lA~~l~~~~~p~~--~---------- 344 (591)
.-|..+|||.+|++++||+..++.|...+..++.+| +||+||+|+|||++|+++|+.+.+...+.. .
T Consensus 4 ~~l~~kyRP~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~ 83 (563)
T PRK06647 4 RGTATKRRPRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSID 83 (563)
T ss_pred HHHHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHH
Confidence 457899999999999999999999999998876665 689999999999999999999976432211 0
Q ss_pred --cCceEEEeehhhhhccccccchHHHHHHHHHHHHH----hcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhccc
Q 007723 345 --LSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPS 418 (591)
Q Consensus 345 --~~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~----~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~ 418 (591)
....++.+|. ....+ .+.++.+.+.+. ..+..|+||||+|.| +..++|.|+..
T Consensus 84 ~~~~~dv~~idg------as~~~--vddIr~l~e~~~~~p~~~~~KVvIIDEa~~L-------------s~~a~naLLK~ 142 (563)
T PRK06647 84 NDNSLDVIEIDG------ASNTS--VQDVRQIKEEIMFPPASSRYRVYIIDEVHML-------------SNSAFNALLKT 142 (563)
T ss_pred cCCCCCeEEecC------cccCC--HHHHHHHHHHHHhchhcCCCEEEEEEChhhc-------------CHHHHHHHHHh
Confidence 0123333332 11111 122444444433 256789999999999 56788999999
Q ss_pred ccC--CcEEEEecCChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHh
Q 007723 419 LGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (591)
Q Consensus 419 le~--g~v~lI~att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~ 496 (591)
+++ ..+.+|++|+... .+.++|.+||+.+.+..++.+++..+|..++... ++.++++++..+++.+.+.
T Consensus 143 LEepp~~~vfI~~tte~~-----kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~e----gi~id~eAl~lLa~~s~Gd 213 (563)
T PRK06647 143 IEEPPPYIVFIFATTEVH-----KLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLED----QIKYEDEALKWIAYKSTGS 213 (563)
T ss_pred hccCCCCEEEEEecCChH-----HhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHcCCC
Confidence 985 5688888776532 3558999999999999999999999998777654 8999999999999998866
Q ss_pred hhcCCCcHHHHHHHHHHhhHhhhhhhccchhhhhhhhc-CChHHHHHHHHHHhhcchHHHHhhchhhHhhhccC
Q 007723 497 ISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILS-KPPDDYWQEIRTVQAMHEVVQGSRLKYDDVVASMG 569 (591)
Q Consensus 497 i~~~~lp~~ai~lld~a~a~~~~~~~~~~~~~~i~~l~-~~~~~~~~~~~~~~~~~d~~~a~~~~~~~~~~~~~ 569 (591)
++ .++.+|+.+++.. +..... +.+..+. ...+........++..+|..+|..+.+...+.+.+
T Consensus 214 lR------~alslLdklis~~---~~~It~-e~V~~llg~~~~~~if~LidaI~~~D~~~al~~l~~Ll~~G~d 277 (563)
T PRK06647 214 VR------DAYTLFDQVVSFS---DSDITL-EQIRSKMGLTGDEFLEKLASSILNEDAKELLCVLDSVFLSGVS 277 (563)
T ss_pred HH------HHHHHHHHHHhhc---CCCCCH-HHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 44 4899999887532 111111 2233333 33444667777889999999999888777654433
No 48
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.83 E-value=1.9e-19 Score=201.09 Aligned_cols=250 Identities=18% Similarity=0.203 Sum_probs=179.1
Q ss_pred hhcccccccCCCCccCCcHHHHHHHHHHHHhcCCCCC-eEecCCCCcHHHHHHHHHHHHHhCCCCc---ccc--------
Q 007723 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP-ILLGESGVGKTAIAEGLAIRIVQAEVPV---FLL-------- 345 (591)
Q Consensus 278 ~~l~~~~r~~~~~~vvG~~~~i~~l~~~L~~~~~~~i-lL~GppGvGKT~la~~lA~~l~~~~~p~---~~~-------- 345 (591)
..|+++|||.+|++++||+..++.|...+...+..|. ||+||+|+|||++|+.+|+.+.+..... .+.
T Consensus 6 ~~l~~KyRP~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~ 85 (725)
T PRK07133 6 KALYRKYRPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNN 85 (725)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcC
Confidence 5789999999999999999999999999988766665 8999999999999999999987643211 010
Q ss_pred CceEEEeehhhhhccccccchHHHHHHHHHHHHHh----cCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccC
Q 007723 346 SKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR 421 (591)
Q Consensus 346 ~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~~----~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~ 421 (591)
...+++++.. ...| ...++.+++.+.. .+..|+||||+|.| ...++|.|+..|+.
T Consensus 86 ~~Dvieidaa------sn~~--vd~IReLie~~~~~P~~g~~KV~IIDEa~~L-------------T~~A~NALLKtLEE 144 (725)
T PRK07133 86 SLDIIEMDAA------SNNG--VDEIRELIENVKNLPTQSKYKIYIIDEVHML-------------SKSAFNALLKTLEE 144 (725)
T ss_pred CCcEEEEecc------ccCC--HHHHHHHHHHHHhchhcCCCEEEEEEChhhC-------------CHHHHHHHHHHhhc
Confidence 1123333321 1111 2235666665543 45679999999999 56689999999985
Q ss_pred --CcEEEEecCChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhhhc
Q 007723 422 --GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499 (591)
Q Consensus 422 --g~v~lI~att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i~~ 499 (591)
+.+++|++|+... .+.+++++||+.+.+.+++.+++..+|..++.+. ++.++++++..++.++.+.++.
T Consensus 145 PP~~tifILaTte~~-----KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~ke----gI~id~eAl~~LA~lS~GslR~ 215 (725)
T PRK07133 145 PPKHVIFILATTEVH-----KIPLTILSRVQRFNFRRISEDEIVSRLEFILEKE----NISYEKNALKLIAKLSSGSLRD 215 (725)
T ss_pred CCCceEEEEEcCChh-----hhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHcCCCHHH
Confidence 4677888776542 4568999999999999999999999998877765 8999999999999999876544
Q ss_pred CCCcHHHHHHHHHHhhHhhhhhhccchhhhhhhhcCC-hHHHHHHHHHHhhcchHHHHhhchhhHhhhc
Q 007723 500 RYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKP-PDDYWQEIRTVQAMHEVVQGSRLKYDDVVAS 567 (591)
Q Consensus 500 ~~lp~~ai~lld~a~a~~~~~~~~~~~~~~i~~l~~~-~~~~~~~~~~~~~~~d~~~a~~~~~~~~~~~ 567 (591)
|+.+++..++.. ........+..+... ..........++..+|...+..+.++....+
T Consensus 216 ------AlslLekl~~y~----~~~It~e~V~ellg~~~~e~If~Ll~aI~~kd~~~aL~~l~~L~~~g 274 (725)
T PRK07133 216 ------ALSIAEQVSIFG----NNKITLKNVEELFGLVSNENLINLLNLLYSKDIKEVLNILNQIKEQG 274 (725)
T ss_pred ------HHHHHHHHHHhc----cCCCCHHHHHHHHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 889998876421 111111223333332 2334445556777788887777766655433
No 49
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.82 E-value=2.5e-19 Score=195.45 Aligned_cols=253 Identities=17% Similarity=0.171 Sum_probs=183.4
Q ss_pred hhcccccccCCCCccCCcHHHHHHHHHHHHhcCCCCC-eEecCCCCcHHHHHHHHHHHHHhCCCCc--ccc---------
Q 007723 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP-ILLGESGVGKTAIAEGLAIRIVQAEVPV--FLL--------- 345 (591)
Q Consensus 278 ~~l~~~~r~~~~~~vvG~~~~i~~l~~~L~~~~~~~i-lL~GppGvGKT~la~~lA~~l~~~~~p~--~~~--------- 345 (591)
.+|+++|||..|++++|++..++.|...+...+.+|. ||+||+|+|||++|+.+|+.+.+..... ...
T Consensus 4 ~~~~~kyRP~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~ 83 (486)
T PRK14953 4 IPFARKYRPKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEID 83 (486)
T ss_pred hHHHHhhCCCcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHh
Confidence 4899999999999999999999999999988776665 7899999999999999999987522111 000
Q ss_pred ---CceEEEeehhhhhccccccchHHHHHHHHHHHHHh----cCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhccc
Q 007723 346 ---SKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPS 418 (591)
Q Consensus 346 ---~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~~----~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~ 418 (591)
...++++|.+ ..+| .+.++.+.+.+.. +...|+||||+|.| +...+|.|+..
T Consensus 84 ~g~~~d~~eidaa------s~~g--vd~ir~I~~~~~~~P~~~~~KVvIIDEad~L-------------t~~a~naLLk~ 142 (486)
T PRK14953 84 KGSFPDLIEIDAA------SNRG--IDDIRALRDAVSYTPIKGKYKVYIIDEAHML-------------TKEAFNALLKT 142 (486)
T ss_pred cCCCCcEEEEeCc------cCCC--HHHHHHHHHHHHhCcccCCeeEEEEEChhhc-------------CHHHHHHHHHH
Confidence 1234444432 1222 1123444444432 45679999999999 56678888888
Q ss_pred ccCC--cEEEEecCChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHh
Q 007723 419 LGRG--ELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (591)
Q Consensus 419 le~g--~v~lI~att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~ 496 (591)
++.. .+++|.+|+... .+.+++.+||+.+.+.+++.+++..+|..++... ++.+++++++.++.++.+.
T Consensus 143 LEepp~~~v~Il~tt~~~-----kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~e----gi~id~~al~~La~~s~G~ 213 (486)
T PRK14953 143 LEEPPPRTIFILCTTEYD-----KIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEE----KIEYEEKALDLLAQASEGG 213 (486)
T ss_pred HhcCCCCeEEEEEECCHH-----HHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHcCCC
Confidence 8853 566666665432 3557899999999999999999999998877765 8999999999999998866
Q ss_pred hhcCCCcHHHHHHHHHHhhHhhhhhhccchhhhhhhhcCC-hHHHHHHHHHHhhcchHHHHhhchhhHhhhccCC
Q 007723 497 ISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKP-PDDYWQEIRTVQAMHEVVQGSRLKYDDVVASMGD 570 (591)
Q Consensus 497 i~~~~lp~~ai~lld~a~a~~~~~~~~~~~~~~i~~l~~~-~~~~~~~~~~~~~~~d~~~a~~~~~~~~~~~~~~ 570 (591)
++ .++++|+.+++.. ......+.|..+... .+...+....++..+|...|..+.++....+.+.
T Consensus 214 lr------~al~~Ldkl~~~~----~~~It~~~V~~~lg~~~~~~vf~Li~ai~~~d~~~al~~l~~L~~~g~~~ 278 (486)
T PRK14953 214 MR------DAASLLDQASTYG----EGKVTIKVVEEFLGIVSQESVRKFLNLLLESDVDEAIKFLRTLEEKGYNL 278 (486)
T ss_pred HH------HHHHHHHHHHHhc----CCCcCHHHHHHHhCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCH
Confidence 54 4899999887431 112222344554444 3345777778999999999999987776544443
No 50
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.82 E-value=3.2e-19 Score=191.38 Aligned_cols=254 Identities=16% Similarity=0.103 Sum_probs=179.4
Q ss_pred hhcccccccCCCCccCCcHHHHHHHHHHHHhcCCCC-CeEecCCCCcHHHHHHHHHHHHHhCCCC----------ccccC
Q 007723 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVP----------VFLLS 346 (591)
Q Consensus 278 ~~l~~~~r~~~~~~vvG~~~~i~~l~~~L~~~~~~~-ilL~GppGvGKT~la~~lA~~l~~~~~p----------~~~~~ 346 (591)
.-|+++|||.+|++++||+..++.|...+...+.+| +||+||||||||++|+.+|+.+.+.... .....
T Consensus 4 ~~l~~k~RP~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~ 83 (397)
T PRK14955 4 QVIARKYRPKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGE 83 (397)
T ss_pred HHHHHhcCCCcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCC
Confidence 457899999999999999999999999998877666 8899999999999999999999763210 00001
Q ss_pred ------------ceEEEeehhhhhccccccchHHHHHHHHHHHHH----hcCCeEEEEcCcchhhcCCCCCCCCCCccHH
Q 007723 347 ------------KRIMSLDMGLLMAGAKERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLD 410 (591)
Q Consensus 347 ------------~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~----~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~ 410 (591)
..++.++.. ...+ .+.++.+.+.+. .....|+||||+|.+ +..
T Consensus 84 c~~c~~~~~~~~~n~~~~~~~------~~~~--id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l-------------~~~ 142 (397)
T PRK14955 84 CESCRDFDAGTSLNISEFDAA------SNNS--VDDIRLLRENVRYGPQKGRYRVYIIDEVHML-------------SIA 142 (397)
T ss_pred CHHHHHHhcCCCCCeEeeccc------ccCC--HHHHHHHHHHHhhchhcCCeEEEEEeChhhC-------------CHH
Confidence 123333321 1111 233455555542 245679999999999 456
Q ss_pred HHHhhcccccC--CcEEEEecCChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHH
Q 007723 411 ISNLLKPSLGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINA 488 (591)
Q Consensus 411 ~~n~L~~~le~--g~v~lI~att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~ 488 (591)
.++.|+..+++ +..++|++++.. ..+.+++.+||..+.+.+++.+++...+..++... ++.+++++++.
T Consensus 143 ~~~~LLk~LEep~~~t~~Il~t~~~-----~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~----g~~i~~~al~~ 213 (397)
T PRK14955 143 AFNAFLKTLEEPPPHAIFIFATTEL-----HKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAE----GISVDADALQL 213 (397)
T ss_pred HHHHHHHHHhcCCCCeEEEEEeCCh-----HHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHc----CCCCCHHHHHH
Confidence 67888888885 456666666542 23458899999999999999999998887776654 89999999999
Q ss_pred HHHHhHHhhhcCCCcHHHHHHHHHHhhHhhhhhhc-cchhhhhhh-hcCChHHHHHHHHHHhhcchHHHHhhchhhHhhh
Q 007723 489 AVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFK-RKKEQQTCI-LSKPPDDYWQEIRTVQAMHEVVQGSRLKYDDVVA 566 (591)
Q Consensus 489 l~~~s~r~i~~~~lp~~ai~lld~a~a~~~~~~~~-~~~~~~i~~-l~~~~~~~~~~~~~~~~~~d~~~a~~~~~~~~~~ 566 (591)
++.++.+.+. .++..++..++.+.-.+.. ....+.|.+ +....+...+....++..++.++|.++.++....
T Consensus 214 l~~~s~g~lr------~a~~~L~kl~~~~~~~~~~~~It~~~v~~~v~~~~~~~vf~l~~ai~~~~~~~al~~~~~l~~~ 287 (397)
T PRK14955 214 IGRKAQGSMR------DAQSILDQVIAFSVESEGEGSIRYDKVAELLNYIDDEHFFAVTDAVADGDAVAMLDVAQFVIRN 287 (397)
T ss_pred HHHHcCCCHH------HHHHHHHHHHHhccccCCCCccCHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 9999987654 4888888776432110111 111122333 3444555777888999999999999887766553
Q ss_pred c
Q 007723 567 S 567 (591)
Q Consensus 567 ~ 567 (591)
+
T Consensus 288 ~ 288 (397)
T PRK14955 288 G 288 (397)
T ss_pred C
Confidence 3
No 51
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.82 E-value=1.5e-19 Score=177.10 Aligned_cols=197 Identities=20% Similarity=0.244 Sum_probs=144.9
Q ss_pred hhcccccccCCCCccCCcHHHHHHHHHHHHhc-----CCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEe
Q 007723 278 VDLTARASEELIDPVIGRETEIQRIIQILCRR-----TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSL 352 (591)
Q Consensus 278 ~~l~~~~r~~~~~~vvG~~~~i~~l~~~L~~~-----~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~l 352 (591)
.+.....||+.|+++|||++..+++.-.++.. ...|+||+||||.||||||+.+|+++. ..+-..
T Consensus 14 ~~~e~~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emg----------vn~k~t 83 (332)
T COG2255 14 MKIERSLRPKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELG----------VNLKIT 83 (332)
T ss_pred hhhhcccCcccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhc----------CCeEec
Confidence 34556779999999999999888877766542 246899999999999999999999982 222221
Q ss_pred ehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCC----------
Q 007723 353 DMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG---------- 422 (591)
Q Consensus 353 d~~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g---------- 422 (591)
....+. ..|++ -.++..+ ..+.||||||||+| +..+-+.|.+.|+.-
T Consensus 84 sGp~le----K~gDl----aaiLt~L--e~~DVLFIDEIHrl-------------~~~vEE~LYpaMEDf~lDI~IG~gp 140 (332)
T COG2255 84 SGPALE----KPGDL----AAILTNL--EEGDVLFIDEIHRL-------------SPAVEEVLYPAMEDFRLDIIIGKGP 140 (332)
T ss_pred cccccc----ChhhH----HHHHhcC--CcCCeEEEehhhhc-------------ChhHHHHhhhhhhheeEEEEEccCC
Confidence 111110 12332 2333333 34569999999999 566778888888631
Q ss_pred ----------cEEEEecCChhHHHhhhcccHHHHccCcc-eeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHH
Q 007723 423 ----------ELQCIASTTQDEHRTQFEKDKALARRFQP-VLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVH 491 (591)
Q Consensus 423 ----------~v~lI~att~~e~~~~~~~d~aL~~Rf~~-i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~ 491 (591)
.+.+|||||... .+..+|++||.. .++..++.+++.+|+.+-...+ ++.+++++...+++
T Consensus 141 ~Arsv~ldLppFTLIGATTr~G-----~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l----~i~i~~~~a~eIA~ 211 (332)
T COG2255 141 AARSIRLDLPPFTLIGATTRAG-----MLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKIL----GIEIDEEAALEIAR 211 (332)
T ss_pred ccceEeccCCCeeEeeeccccc-----cccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHh----CCCCChHHHHHHHH
Confidence 578999999853 466899999984 7999999999999997766655 99999999999998
Q ss_pred HhHHhhhcCCCcHHHHHHHHHHhhHhhhhhh
Q 007723 492 LSARYISDRYLPDKAIDLVDEAGSRAHIELF 522 (591)
Q Consensus 492 ~s~r~i~~~~lp~~ai~lld~a~a~~~~~~~ 522 (591)
.|+ ..|+-|..||.+.--.+.+.+.
T Consensus 212 rSR------GTPRIAnRLLrRVRDfa~V~~~ 236 (332)
T COG2255 212 RSR------GTPRIANRLLRRVRDFAQVKGD 236 (332)
T ss_pred hcc------CCcHHHHHHHHHHHHHHHHhcC
Confidence 874 3477788888766544444433
No 52
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.82 E-value=4.5e-19 Score=197.33 Aligned_cols=255 Identities=16% Similarity=0.119 Sum_probs=182.0
Q ss_pred hcccccccCCCCccCCcHHHHHHHHHHHHhcCCCC-CeEecCCCCcHHHHHHHHHHHHHhCCC---C-------cccc--
Q 007723 279 DLTARASEELIDPVIGRETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEV---P-------VFLL-- 345 (591)
Q Consensus 279 ~l~~~~r~~~~~~vvG~~~~i~~l~~~L~~~~~~~-ilL~GppGvGKT~la~~lA~~l~~~~~---p-------~~~~-- 345 (591)
-++++|||.+|++++||+..++.|...+...+.+| +||+||+|||||++|+.+|+.+.+... | ....
T Consensus 5 ~l~~kyRP~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C 84 (620)
T PRK14954 5 VIARKYRPSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGEC 84 (620)
T ss_pred HHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccC
Confidence 47899999999999999999999999888766655 789999999999999999999976321 1 0000
Q ss_pred ----------CceEEEeehhhhhccccccchHHHHHHHHHHHHH----hcCCeEEEEcCcchhhcCCCCCCCCCCccHHH
Q 007723 346 ----------SKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDI 411 (591)
Q Consensus 346 ----------~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~----~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~ 411 (591)
...+..+|.. ...+ .+.++.+.+.+. .....|+||||+|.| +...
T Consensus 85 ~sC~~~~~g~~~n~~~~d~~------s~~~--vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~L-------------t~~a 143 (620)
T PRK14954 85 ESCRDFDAGTSLNISEFDAA------SNNS--VDDIRQLRENVRYGPQKGRYRVYIIDEVHML-------------STAA 143 (620)
T ss_pred HHHHHHhccCCCCeEEeccc------ccCC--HHHHHHHHHHHHhhhhcCCCEEEEEeChhhc-------------CHHH
Confidence 1123333321 1111 233555555552 255789999999999 5567
Q ss_pred HHhhcccccC--CcEEEEecCChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHH
Q 007723 412 SNLLKPSLGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAA 489 (591)
Q Consensus 412 ~n~L~~~le~--g~v~lI~att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l 489 (591)
+|.|+..|++ +..++|++|+.. ..+.++|.+||..+.+..++.+++...|..++... ++.|++++++.+
T Consensus 144 ~naLLK~LEePp~~tv~IL~t~~~-----~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~e----gi~I~~eal~~L 214 (620)
T PRK14954 144 FNAFLKTLEEPPPHAIFIFATTEL-----HKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAE----GIQIDADALQLI 214 (620)
T ss_pred HHHHHHHHhCCCCCeEEEEEeCCh-----hhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHc----CCCCCHHHHHHH
Confidence 8999999986 467777766542 23558999999999999999999998887776654 899999999999
Q ss_pred HHHhHHhhhcCCCcHHHHHHHHHHhhHhhhhhhccc-hhhhhhh-hcCChHHHHHHHHHHhhcchHHHHhhchhhHhhhc
Q 007723 490 VHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRK-KEQQTCI-LSKPPDDYWQEIRTVQAMHEVVQGSRLKYDDVVAS 567 (591)
Q Consensus 490 ~~~s~r~i~~~~lp~~ai~lld~a~a~~~~~~~~~~-~~~~i~~-l~~~~~~~~~~~~~~~~~~d~~~a~~~~~~~~~~~ 567 (591)
+.++.+.+.. ++..|+..++...-.+.... ..+.|.+ +....+...+....++..+|+.+|.++.++....+
T Consensus 215 a~~s~Gdlr~------al~eLeKL~~y~~~~~~~~~It~~~V~~lv~~~~e~~iF~L~dai~~~d~~~al~~l~~Ll~~g 288 (620)
T PRK14954 215 ARKAQGSMRD------AQSILDQVIAFSVGSEAEKVIAYQGVAELLNYIDDEQFFDVTDAIAENDAVKMLEVARFVIDNG 288 (620)
T ss_pred HHHhCCCHHH------HHHHHHHHHHhccccccCCccCHHHHHHHHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999877554 88888877653210000111 1122333 33445567788889999999999999887776544
Q ss_pred cC
Q 007723 568 MG 569 (591)
Q Consensus 568 ~~ 569 (591)
.+
T Consensus 289 e~ 290 (620)
T PRK14954 289 YD 290 (620)
T ss_pred CC
Confidence 33
No 53
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.82 E-value=8e-19 Score=190.35 Aligned_cols=250 Identities=16% Similarity=0.135 Sum_probs=177.9
Q ss_pred hhcccccccCCCCccCCcHHHHHHHHHHHHhcCCCC-CeEecCCCCcHHHHHHHHHHHHHhCCCCcc---c---------
Q 007723 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPVF---L--------- 344 (591)
Q Consensus 278 ~~l~~~~r~~~~~~vvG~~~~i~~l~~~L~~~~~~~-ilL~GppGvGKT~la~~lA~~l~~~~~p~~---~--------- 344 (591)
..|+++|||.+|++++|++..+..|...+..++.++ +||+||+|+|||++|+.+|+.+.+...... .
T Consensus 5 ~~~~~kyRP~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i 84 (451)
T PRK06305 5 QVSSRKYRPQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEI 84 (451)
T ss_pred HHHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHH
Confidence 468899999999999999999999999998766544 789999999999999999999865321100 0
Q ss_pred ---cCceEEEeehhhhhccccccchHHHHHHHHHHHHH----hcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcc
Q 007723 345 ---LSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKP 417 (591)
Q Consensus 345 ---~~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~----~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~ 417 (591)
....++.++. ....| .+.++.+.+.+. .....|+||||+|.+ ..+.+|.|+.
T Consensus 85 ~~~~~~d~~~i~g------~~~~g--id~ir~i~~~l~~~~~~~~~kvvIIdead~l-------------t~~~~n~LLk 143 (451)
T PRK06305 85 SSGTSLDVLEIDG------ASHRG--IEDIRQINETVLFTPSKSRYKIYIIDEVHML-------------TKEAFNSLLK 143 (451)
T ss_pred hcCCCCceEEeec------cccCC--HHHHHHHHHHHHhhhhcCCCEEEEEecHHhh-------------CHHHHHHHHH
Confidence 0112333332 11222 112333333222 256789999999999 5567899999
Q ss_pred cccC--CcEEEEecCChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHH
Q 007723 418 SLGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495 (591)
Q Consensus 418 ~le~--g~v~lI~att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r 495 (591)
.++. +.+.+|++|+.. ..+.++|++||..+.+..++.+++...|..++.+. ++.+++++++.++.++.+
T Consensus 144 ~lEep~~~~~~Il~t~~~-----~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~e----g~~i~~~al~~L~~~s~g 214 (451)
T PRK06305 144 TLEEPPQHVKFFLATTEI-----HKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQE----GIETSREALLPIARAAQG 214 (451)
T ss_pred HhhcCCCCceEEEEeCCh-----HhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHcCC
Confidence 9985 567777777643 24668999999999999999999999998777654 899999999999999987
Q ss_pred hhhcCCCcHHHHHHHHHHhhHhhhhhhccchhhhhhh-hcCChHHHHHHHHHHhhcchHHHHhhchhhHhhhc
Q 007723 496 YISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCI-LSKPPDDYWQEIRTVQAMHEVVQGSRLKYDDVVAS 567 (591)
Q Consensus 496 ~i~~~~lp~~ai~lld~a~a~~~~~~~~~~~~~~i~~-l~~~~~~~~~~~~~~~~~~d~~~a~~~~~~~~~~~ 567 (591)
.++ .++.+++..+... +..... +.|.. +....+...+....++..+|++.|..+.++....+
T Consensus 215 dlr------~a~~~Lekl~~~~---~~~It~-~~V~~l~~~~~~~~vf~L~~ai~~~d~~~al~~l~~L~~~g 277 (451)
T PRK06305 215 SLR------DAESLYDYVVGLF---PKSLDP-DSVAKALGLLSQDSLYTLDEAITTQNYAQALEPVTDAMNSG 277 (451)
T ss_pred CHH------HHHHHHHHHHHhc---cCCcCH-HHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 654 4888888766421 111222 22333 33444555556668899999999988877665544
No 54
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=3.7e-19 Score=174.53 Aligned_cols=191 Identities=20% Similarity=0.279 Sum_probs=150.3
Q ss_pred cCCCCccCCcHHHHHHHHHHHH------------hcCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEee
Q 007723 286 EELIDPVIGRETEIQRIIQILC------------RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (591)
Q Consensus 286 ~~~~~~vvG~~~~i~~l~~~L~------------~~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld 353 (591)
.-++++|.|.+...+.|.+.+- |..-+.+||||||||||+.||+++|.+. +..|+.+.
T Consensus 129 NVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA----------nSTFFSvS 198 (439)
T KOG0739|consen 129 NVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA----------NSTFFSVS 198 (439)
T ss_pred CCchhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc----------CCceEEee
Confidence 3478999999999998887532 1223689999999999999999999987 67889998
Q ss_pred hhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhccccc-----CCcEEEEe
Q 007723 354 MGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG-----RGELQCIA 428 (591)
Q Consensus 354 ~~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le-----~g~v~lI~ 428 (591)
.+.++ .++.|+.+..++.+|+-+++..+.||||||||.|++.+..+++ +.++.+-.-|+..|. ...+.++|
T Consensus 199 SSDLv--SKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEs--easRRIKTEfLVQMqGVG~d~~gvLVLg 274 (439)
T KOG0739|consen 199 SSDLV--SKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENES--EASRRIKTEFLVQMQGVGNDNDGVLVLG 274 (439)
T ss_pred hHHHH--HHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCch--HHHHHHHHHHHHhhhccccCCCceEEEe
Confidence 88888 5699999999999999999999999999999999887655332 333444444443332 34588889
Q ss_pred cCChhHHHhhhcccHHHHccCc-ceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhhhc
Q 007723 429 STTQDEHRTQFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499 (591)
Q Consensus 429 att~~e~~~~~~~d~aL~~Rf~-~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i~~ 499 (591)
+||.+ +.+|.+++|||. .|+|+.|....+..+++-.+.. ....+++..+..+.+.+.+|-..
T Consensus 275 ATNiP-----w~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~----tp~~LT~~d~~eL~~kTeGySGs 337 (439)
T KOG0739|consen 275 ATNIP-----WVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGD----TPHVLTEQDFKELARKTEGYSGS 337 (439)
T ss_pred cCCCc-----hhHHHHHHHHhhcceeccCCcHHHhhhhheeccCC----CccccchhhHHHHHhhcCCCCcC
Confidence 99874 678999999998 5999999998887777543332 24568888899999999888544
No 55
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.81 E-value=1e-18 Score=183.69 Aligned_cols=248 Identities=13% Similarity=0.191 Sum_probs=172.9
Q ss_pred hcccccccCCCCccCCcHHHHHHHHHHHHhcCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhh
Q 007723 279 DLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM 358 (591)
Q Consensus 279 ~l~~~~r~~~~~~vvG~~~~i~~l~~~L~~~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~ 358 (591)
.|+++|||.+|++++|+++.++.+...+..+..++++|+||||||||++|+++++.+.+.. .+..++.+++..+.
T Consensus 4 ~w~~ky~P~~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~-----~~~~~~~i~~~~~~ 78 (337)
T PRK12402 4 LWTEKYRPALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDP-----WENNFTEFNVADFF 78 (337)
T ss_pred chHHhhCCCcHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcc-----cccceEEechhhhh
Confidence 6899999999999999999999999998887767899999999999999999999985432 12234555554432
Q ss_pred ccc-------c----ccc-------hHHHHHHHHHHHHHh-----cCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhh
Q 007723 359 AGA-------K----ERG-------ELEARVTTLISEIQK-----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLL 415 (591)
Q Consensus 359 ~g~-------~----~~g-------~~~~~i~~i~~~~~~-----~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L 415 (591)
... . ..+ .....++.++..... ....+|||||+|.+ ..+.++.|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l-------------~~~~~~~L 145 (337)
T PRK12402 79 DQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEAL-------------REDAQQAL 145 (337)
T ss_pred hcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccC-------------CHHHHHHH
Confidence 110 0 000 012234444433322 33569999999998 44556677
Q ss_pred cccccC--CcEEEEecCChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHh
Q 007723 416 KPSLGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLS 493 (591)
Q Consensus 416 ~~~le~--g~v~lI~att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s 493 (591)
...++. ...++|.+++... .+.++|.+||..+.+.+|+.+++..+|..++.+. ++.+++++++.++.++
T Consensus 146 ~~~le~~~~~~~~Il~~~~~~-----~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~----~~~~~~~al~~l~~~~ 216 (337)
T PRK12402 146 RRIMEQYSRTCRFIIATRQPS-----KLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAE----GVDYDDDGLELIAYYA 216 (337)
T ss_pred HHHHHhccCCCeEEEEeCChh-----hCchhhcCCceEEEecCCCHHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHc
Confidence 776652 3355565555432 3457899999999999999999999998776654 8899999999999998
Q ss_pred HHhhhcCCCcHHHHHHHHHHhhHhhhhhhccchhhhhhhhcC--ChHHHHHHHHHHhhcchHHHHhhchhhHh
Q 007723 494 ARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSK--PPDDYWQEIRTVQAMHEVVQGSRLKYDDV 564 (591)
Q Consensus 494 ~r~i~~~~lp~~ai~lld~a~a~~~~~~~~~~~~~~i~~l~~--~~~~~~~~~~~~~~~~d~~~a~~~~~~~~ 564 (591)
.+.++ +++..|+.++. . ........+.++.. ..+...++...++..+|+.+|..+..+.-
T Consensus 217 ~gdlr------~l~~~l~~~~~----~-~~~It~~~v~~~~~~~~~~~~i~~l~~ai~~~~~~~a~~~l~~l~ 278 (337)
T PRK12402 217 GGDLR------KAILTLQTAAL----A-AGEITMEAAYEALGDVGTDEVIESLLDAAEAGDFTDARKTLDDLL 278 (337)
T ss_pred CCCHH------HHHHHHHHHHH----c-CCCCCHHHHHHHhCCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 65543 47777776552 1 11222234444433 34567778888999999999988877653
No 56
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.81 E-value=9.9e-19 Score=177.37 Aligned_cols=216 Identities=19% Similarity=0.216 Sum_probs=155.5
Q ss_pred CCCccCCcHHHHHHHHHHHHh---------------cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEe
Q 007723 288 LIDPVIGRETEIQRIIQILCR---------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSL 352 (591)
Q Consensus 288 ~~~~vvG~~~~i~~l~~~L~~---------------~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~l 352 (591)
.+++++|.+++.+++.++... +...|++|+||||||||++|+.+|+.+...+. .....++++
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~---~~~~~~v~~ 80 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNV---LSKGHLIEV 80 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCc---ccCCceEEe
Confidence 467899999988777654211 12357899999999999999999998854331 224467778
Q ss_pred ehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccC--CcEEEEecC
Q 007723 353 DMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQCIAST 430 (591)
Q Consensus 353 d~~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~--g~v~lI~at 430 (591)
+.+.+.. .+.|+....++.+++.+ .++||||||+|.|...+. .....+.++.|+..++. +.+++|+++
T Consensus 81 ~~~~l~~--~~~g~~~~~~~~~~~~a---~~~VL~IDE~~~L~~~~~-----~~~~~~~i~~Ll~~~e~~~~~~~vila~ 150 (261)
T TIGR02881 81 ERADLVG--EYIGHTAQKTREVIKKA---LGGVLFIDEAYSLARGGE-----KDFGKEAIDTLVKGMEDNRNEFVLILAG 150 (261)
T ss_pred cHHHhhh--hhccchHHHHHHHHHhc---cCCEEEEechhhhccCCc-----cchHHHHHHHHHHHHhccCCCEEEEecC
Confidence 8777663 35677777777777643 467999999999953211 11235677888887763 567888888
Q ss_pred ChhHHHhhhcccHHHHccCc-ceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhhh--c--CCCcHH
Q 007723 431 TQDEHRTQFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS--D--RYLPDK 505 (591)
Q Consensus 431 t~~e~~~~~~~d~aL~~Rf~-~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i~--~--~~lp~~ 505 (591)
++.+......++++|.+||. .|.++.++.+++.+|++..+.. .++.++++++.++.+...+... . ..--+.
T Consensus 151 ~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~----~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~ 226 (261)
T TIGR02881 151 YSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKE----REYKLTEEAKWKLREHLYKVDQLSSREFSNARY 226 (261)
T ss_pred CcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHH----cCCccCHHHHHHHHHHHHHHHhccCCCCchHHH
Confidence 77666566778999999996 5999999999999999877765 3788999999999888765531 1 112346
Q ss_pred HHHHHHHHhhHhhhh
Q 007723 506 AIDLVDEAGSRAHIE 520 (591)
Q Consensus 506 ai~lld~a~a~~~~~ 520 (591)
+.++++.|..+...+
T Consensus 227 ~~n~~e~a~~~~~~r 241 (261)
T TIGR02881 227 VRNIIEKAIRRQAVR 241 (261)
T ss_pred HHHHHHHHHHHHHHH
Confidence 778888887654433
No 57
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=5.9e-19 Score=187.31 Aligned_cols=184 Identities=21% Similarity=0.287 Sum_probs=145.3
Q ss_pred CCCccCCcHHHHHHHHHHHHh-------------cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeeh
Q 007723 288 LIDPVIGRETEIQRIIQILCR-------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (591)
Q Consensus 288 ~~~~vvG~~~~i~~l~~~L~~-------------~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~ 354 (591)
+|+++=|.++.-.+|...+.. ..+.++|||||||||||.||+++|++. +..|+.+-.
T Consensus 509 tW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEa----------g~NFisVKG 578 (802)
T KOG0733|consen 509 TWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEA----------GANFISVKG 578 (802)
T ss_pred ChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhc----------cCceEeecC
Confidence 345555555544455443322 345789999999999999999999987 778899988
Q ss_pred hhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhccccc----CCcEEEEecC
Q 007723 355 GLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG----RGELQCIAST 430 (591)
Q Consensus 355 ~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le----~g~v~lI~at 430 (591)
.+++ .+|.|+.|..++.+|..++...++|||+||+|.|+..++.+. ...+..+.|.|+..|. +..|.+|+||
T Consensus 579 PELl--NkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~--s~~s~RvvNqLLtElDGl~~R~gV~viaAT 654 (802)
T KOG0733|consen 579 PELL--NKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG--SSVSSRVVNQLLTELDGLEERRGVYVIAAT 654 (802)
T ss_pred HHHH--HHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC--chhHHHHHHHHHHHhcccccccceEEEeec
Confidence 8888 468999999999999999999999999999999998765533 3445678888887664 6679999999
Q ss_pred ChhHHHhhhcccHHHHc--cCcc-eeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHH-HHHHHHHhH
Q 007723 431 TQDEHRTQFEKDKALAR--RFQP-VLISEPSQEDAVRILLGLREKYEAHHNCKFTLEA-INAAVHLSA 494 (591)
Q Consensus 431 t~~e~~~~~~~d~aL~~--Rf~~-i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~a-l~~l~~~s~ 494 (591)
|.++ -+||+++| ||+. ++++.|+.+++.+||+.+... ++..+++++ ++.|+....
T Consensus 655 NRPD-----iIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn----~k~pl~~dVdl~eia~~~~ 713 (802)
T KOG0733|consen 655 NRPD-----IIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKN----TKPPLSSDVDLDEIARNTK 713 (802)
T ss_pred CCCc-----ccchhhcCCCccCceeeecCCCHHHHHHHHHHHhcc----CCCCCCcccCHHHHhhccc
Confidence 9975 47899999 9985 899999999999999877663 355555555 777776654
No 58
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.80 E-value=9.4e-19 Score=195.81 Aligned_cols=254 Identities=19% Similarity=0.142 Sum_probs=186.8
Q ss_pred hhcccccccCCCCccCCcHHHHHHHHHHHHhcCCCC-CeEecCCCCcHHHHHHHHHHHHHhCCCCc--------------
Q 007723 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPV-------------- 342 (591)
Q Consensus 278 ~~l~~~~r~~~~~~vvG~~~~i~~l~~~L~~~~~~~-ilL~GppGvGKT~la~~lA~~l~~~~~p~-------------- 342 (591)
.-++++|||.+|++++|++..++.|...+...+.++ +||+||+|+|||++|+.+|+.+.+.....
T Consensus 5 ~~~~~kyRP~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~ 84 (614)
T PRK14971 5 IVSARKYRPSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAF 84 (614)
T ss_pred HHHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHH
Confidence 457899999999999999999999999998877766 68999999999999999999986532100
Q ss_pred -cccCceEEEeehhhhhccccccchHHHHHHHHHHHHHh----cCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcc
Q 007723 343 -FLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKP 417 (591)
Q Consensus 343 -~~~~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~~----~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~ 417 (591)
......++.+|... ..+ .+.++.+++.+.. ++..|+||||+|.| +.+.+|.|+.
T Consensus 85 ~~~~~~n~~~ld~~~------~~~--vd~Ir~li~~~~~~P~~~~~KVvIIdea~~L-------------s~~a~naLLK 143 (614)
T PRK14971 85 NEQRSYNIHELDAAS------NNS--VDDIRNLIEQVRIPPQIGKYKIYIIDEVHML-------------SQAAFNAFLK 143 (614)
T ss_pred hcCCCCceEEecccc------cCC--HHHHHHHHHHHhhCcccCCcEEEEEECcccC-------------CHHHHHHHHH
Confidence 01122344444321 111 2335555555532 45679999999999 6678999999
Q ss_pred cccC--CcEEEEecCChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHH
Q 007723 418 SLGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495 (591)
Q Consensus 418 ~le~--g~v~lI~att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r 495 (591)
+|+. ...++|++|+.. ..+-++|++||..+.+..++.+++...|..++.+. ++.+++++++.++..+.+
T Consensus 144 ~LEepp~~tifIL~tt~~-----~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~e----gi~i~~~al~~La~~s~g 214 (614)
T PRK14971 144 TLEEPPSYAIFILATTEK-----HKILPTILSRCQIFDFNRIQVADIVNHLQYVASKE----GITAEPEALNVIAQKADG 214 (614)
T ss_pred HHhCCCCCeEEEEEeCCc-----hhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHcCC
Confidence 9986 567788777653 24568999999999999999999999998877765 899999999999999987
Q ss_pred hhhcCCCcHHHHHHHHHHhhHhhhhhhccchhhhhhhhcCChHHHHHHHHHHhhcchHHHHhhchhhHhhhccCC
Q 007723 496 YISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKYDDVVASMGD 570 (591)
Q Consensus 496 ~i~~~~lp~~ai~lld~a~a~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~d~~~a~~~~~~~~~~~~~~ 570 (591)
.++. ++.+|+..++.. +.....+.....+.......++....++..+++..|..+.++.-..+.++
T Consensus 215 dlr~------al~~Lekl~~y~---~~~It~~~V~~~l~~~~~~~iF~L~dai~~~~~~~al~ll~~Ll~~g~~~ 280 (614)
T PRK14971 215 GMRD------ALSIFDQVVSFT---GGNITYKSVIENLNILDYDYYFRLTDALLAGKVSDSLLLFDEILNKGFDG 280 (614)
T ss_pred CHHH------HHHHHHHHHHhc---cCCccHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCH
Confidence 6554 888888876432 11112222233444455556788889999999999999887766544443
No 59
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=5.5e-19 Score=191.82 Aligned_cols=192 Identities=23% Similarity=0.346 Sum_probs=146.9
Q ss_pred ccccCCCCccCCcHHHHHHHHHHHHh------------cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEE
Q 007723 283 RASEELIDPVIGRETEIQRIIQILCR------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIM 350 (591)
Q Consensus 283 ~~r~~~~~~vvG~~~~i~~l~~~L~~------------~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~ 350 (591)
|...-+++++=|-++....|.+.+.- +.+.++|||||||||||.+|+++|.++ .-.|+
T Consensus 665 KIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc----------sL~Fl 734 (953)
T KOG0736|consen 665 KIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC----------SLNFL 734 (953)
T ss_pred CCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc----------eeeEE
Confidence 44455789999998887777775432 346789999999999999999999988 56788
Q ss_pred EeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCC-CCCCCCCccHH-HHHhhccccc------CC
Q 007723 351 SLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGT-VGRGNKGTGLD-ISNLLKPSLG------RG 422 (591)
Q Consensus 351 ~ld~~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~-~~~~~~~~~~~-~~n~L~~~le------~g 422 (591)
++-..+++ ..|.|+.|+.++++|+.++.+.++|||+||+|.|..+++ .|+ ++|.+| +...|+..|. ..
T Consensus 735 SVKGPELL--NMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGD--SGGVMDRVVSQLLAELDgls~~~s~ 810 (953)
T KOG0736|consen 735 SVKGPELL--NMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGD--SGGVMDRVVSQLLAELDGLSDSSSQ 810 (953)
T ss_pred eecCHHHH--HHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCC--ccccHHHHHHHHHHHhhcccCCCCC
Confidence 88877877 468999999999999999999999999999999988743 333 344443 4455554443 24
Q ss_pred cEEEEecCChhHHHhhhcccHHHHc--cCcc-eeecCC-CHHHHHHHHHHHHHHHHhhcCCCCcHHH-HHHHHHHhHHhh
Q 007723 423 ELQCIASTTQDEHRTQFEKDKALAR--RFQP-VLISEP-SQEDAVRILLGLREKYEAHHNCKFTLEA-INAAVHLSARYI 497 (591)
Q Consensus 423 ~v~lI~att~~e~~~~~~~d~aL~~--Rf~~-i~i~~p-~~~e~~~iL~~~~~~~~~~~~i~i~~~a-l~~l~~~s~r~i 497 (591)
.+.+|||||.++ -+||+|.| ||++ ++++++ +.+....+|+.+.+++ .+++++ +..+++.+.-.+
T Consensus 811 ~VFViGATNRPD-----LLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkF------kLdedVdL~eiAk~cp~~~ 879 (953)
T KOG0736|consen 811 DVFVIGATNRPD-----LLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKF------KLDEDVDLVEIAKKCPPNM 879 (953)
T ss_pred ceEEEecCCCcc-----ccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHc------cCCCCcCHHHHHhhCCcCC
Confidence 699999999986 37899999 9996 788887 4577777888887766 344443 667777765444
Q ss_pred hc
Q 007723 498 SD 499 (591)
Q Consensus 498 ~~ 499 (591)
..
T Consensus 880 TG 881 (953)
T KOG0736|consen 880 TG 881 (953)
T ss_pred ch
Confidence 43
No 60
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=9.2e-18 Score=187.31 Aligned_cols=195 Identities=21% Similarity=0.262 Sum_probs=136.1
Q ss_pred CchHHHhhchhcccccccCCCCccCCcHHHHHHHHHHHHhcC---------CCCCeEecCCCCcHHHHHHHHHHHHHhCC
Q 007723 269 RASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRT---------KNNPILLGESGVGKTAIAEGLAIRIVQAE 339 (591)
Q Consensus 269 ~~~~l~~~~~~l~~~~r~~~~~~vvG~~~~i~~l~~~L~~~~---------~~~ilL~GppGvGKT~la~~lA~~l~~~~ 339 (591)
+...|......|.++ |+||++.+..+.+.+.+.+ ..+++|.||+|||||.||++||..+...
T Consensus 478 e~~kll~le~~L~~r--------ViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~- 548 (786)
T COG0542 478 EKEKLLNLERRLKKR--------VIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGD- 548 (786)
T ss_pred hHHHHHHHHHHHhcc--------eeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCC-
Confidence 334444444444443 8999999999999887621 2456899999999999999999999543
Q ss_pred CCccccCceEEEeehhhhh--------ccc--cccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccH
Q 007723 340 VPVFLLSKRIMSLDMGLLM--------AGA--KERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGL 409 (591)
Q Consensus 340 ~p~~~~~~~~~~ld~~~l~--------~g~--~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~ 409 (591)
...++.+||+++. .|+ .|.|--+ -..+-+.+++.+..|+++|||+.- ..
T Consensus 549 ------e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyee--GG~LTEaVRr~PySViLlDEIEKA-------------Hp 607 (786)
T COG0542 549 ------EQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEE--GGQLTEAVRRKPYSVILLDEIEKA-------------HP 607 (786)
T ss_pred ------CccceeechHHHHHHHHHHHHhCCCCCCceecc--ccchhHhhhcCCCeEEEechhhhc-------------CH
Confidence 4678899999775 121 2222111 111223344467889999999988 88
Q ss_pred HHHHhhcccccCCc-------------EEEEecCChhHHH-----------------hh------hcccHHHHccCc-ce
Q 007723 410 DISNLLKPSLGRGE-------------LQCIASTTQDEHR-----------------TQ------FEKDKALARRFQ-PV 452 (591)
Q Consensus 410 ~~~n~L~~~le~g~-------------v~lI~att~~e~~-----------------~~------~~~d~aL~~Rf~-~i 452 (591)
+++|+|+++|+.|. .++|.|+|-.... .. -...|.|++|++ +|
T Consensus 608 dV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II 687 (786)
T COG0542 608 DVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEII 687 (786)
T ss_pred HHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEE
Confidence 99999999998663 4677776633110 00 012488899998 79
Q ss_pred eecCCCHHHHHHHHHHHHHHHHh-----hcCCCCcHHHHHHHHHHh
Q 007723 453 LISEPSQEDAVRILLGLREKYEA-----HHNCKFTLEAINAAVHLS 493 (591)
Q Consensus 453 ~i~~p~~~e~~~iL~~~~~~~~~-----~~~i~i~~~al~~l~~~s 493 (591)
.|.+.+.+...+|+...+.+... ...+.+++++.+++++..
T Consensus 688 ~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~~a~~~l~~~g 733 (786)
T COG0542 688 PFNPLSKEVLERIVDLQLNRLAKRLAERGITLELSDEAKDFLAEKG 733 (786)
T ss_pred eccCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHhc
Confidence 99999999999988776554432 345678999999999876
No 61
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.80 E-value=6.4e-19 Score=194.97 Aligned_cols=214 Identities=22% Similarity=0.280 Sum_probs=155.1
Q ss_pred hchhcccccccCCCCccCCcHHHHHHHHHHHHhcCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehh
Q 007723 276 FCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMG 355 (591)
Q Consensus 276 ~~~~l~~~~r~~~~~~vvG~~~~i~~l~~~L~~~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~ 355 (591)
...+|.+++||.+|++++|+++.++.+...+......+++|+||||||||++|+++++...+........+..++.+|+.
T Consensus 51 ~~~~~~~~~rp~~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~ 130 (531)
T TIGR02902 51 LTEPLSEKTRPKSFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDAT 130 (531)
T ss_pred hcchHHHhhCcCCHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccc
Confidence 35699999999999999999999999998888777889999999999999999999987643221111124567777764
Q ss_pred hhh----------cccc----ccc--hHH--HHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcc
Q 007723 356 LLM----------AGAK----ERG--ELE--ARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKP 417 (591)
Q Consensus 356 ~l~----------~g~~----~~g--~~~--~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~ 417 (591)
... .+.. +.+ .+. .........+.++++++|||||||.| ..+.++.|+.
T Consensus 131 ~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L-------------~~~~q~~LL~ 197 (531)
T TIGR02902 131 TARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGEL-------------HPVQMNKLLK 197 (531)
T ss_pred cccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhC-------------CHHHHHHHHH
Confidence 210 0000 000 000 00000011233466789999999999 6778888887
Q ss_pred cccCC------------------------------cEEEEecCChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHH
Q 007723 418 SLGRG------------------------------ELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILL 467 (591)
Q Consensus 418 ~le~g------------------------------~v~lI~att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~ 467 (591)
.|+.+ .+++|++||.+. ..+++++++||..+.+.+++.+++.++++
T Consensus 198 ~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p----~~L~paLrsR~~~I~f~pL~~eei~~Il~ 273 (531)
T TIGR02902 198 VLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNP----EEIPPALRSRCVEIFFRPLLDEEIKEIAK 273 (531)
T ss_pred HHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCc----ccCChHHhhhhheeeCCCCCHHHHHHHHH
Confidence 76532 357888888753 46789999999999999999999999998
Q ss_pred HHHHHHHhhcCCCCcHHHHHHHHHHhHHhhhcCCCcHHHHHHHHHHhhHh
Q 007723 468 GLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRA 517 (591)
Q Consensus 468 ~~~~~~~~~~~i~i~~~al~~l~~~s~r~i~~~~lp~~ai~lld~a~a~~ 517 (591)
..+++. ++.+++++++.+..++. + .+.++.+++.|+..+
T Consensus 274 ~~a~k~----~i~is~~al~~I~~y~~----n---~Rel~nll~~Aa~~A 312 (531)
T TIGR02902 274 NAAEKI----GINLEKHALELIVKYAS----N---GREAVNIVQLAAGIA 312 (531)
T ss_pred HHHHHc----CCCcCHHHHHHHHHhhh----h---HHHHHHHHHHHHHHH
Confidence 877765 78999999998887664 2 356888898887544
No 62
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.80 E-value=2.4e-18 Score=192.90 Aligned_cols=251 Identities=17% Similarity=0.128 Sum_probs=177.6
Q ss_pred hhcccccccCCCCccCCcHHHHHHHHHHHHhcCCCC-CeEecCCCCcHHHHHHHHHHHHHhCCC-Cc--ccc--------
Q 007723 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEV-PV--FLL-------- 345 (591)
Q Consensus 278 ~~l~~~~r~~~~~~vvG~~~~i~~l~~~L~~~~~~~-ilL~GppGvGKT~la~~lA~~l~~~~~-p~--~~~-------- 345 (591)
..|.++|||.+|+++|||++.++.|...+..++..+ +||+||+|+|||++|+.+++.+.+... +. .+.
T Consensus 4 ~~l~~kyRP~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i 83 (585)
T PRK14950 4 QVLYRKWRSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAI 83 (585)
T ss_pred HHHHHHhCCCCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHH
Confidence 457899999999999999999999999888766655 589999999999999999999865321 10 000
Q ss_pred ----CceEEEeehhhhhccccccchHHHHHHHHHHHHHh----cCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcc
Q 007723 346 ----SKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKP 417 (591)
Q Consensus 346 ----~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~~----~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~ 417 (591)
...+++++... ..+ .+.++.+++.+.. ....|+||||+|.| ..+.+|.|+.
T Consensus 84 ~~~~~~d~~~i~~~~------~~~--vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L-------------~~~a~naLLk 142 (585)
T PRK14950 84 AEGSAVDVIEMDAAS------HTS--VDDAREIIERVQFRPALARYKVYIIDEVHML-------------STAAFNALLK 142 (585)
T ss_pred hcCCCCeEEEEeccc------cCC--HHHHHHHHHHHhhCcccCCeEEEEEeChHhC-------------CHHHHHHHHH
Confidence 11234443211 111 1224455544332 45689999999999 5567888988
Q ss_pred cccC--CcEEEEecCChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHH
Q 007723 418 SLGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495 (591)
Q Consensus 418 ~le~--g~v~lI~att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r 495 (591)
.++. ...++|++++... .+.+++.+||..+.|..++..++..++..++.+. ++.++++++..++.++.+
T Consensus 143 ~LEepp~~tv~Il~t~~~~-----kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~e----gl~i~~eal~~La~~s~G 213 (585)
T PRK14950 143 TLEEPPPHAIFILATTEVH-----KVPATILSRCQRFDFHRHSVADMAAHLRKIAAAE----GINLEPGALEAIARAATG 213 (585)
T ss_pred HHhcCCCCeEEEEEeCChh-----hhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHcCC
Confidence 8885 4566666665432 2457899999999999999999999988777654 899999999999999876
Q ss_pred hhhcCCCcHHHHHHHHHHhhHhhhhhhccchhhhhhh-hcCChHHHHHHHHHHhhcchHHHHhhchhhHhhhcc
Q 007723 496 YISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCI-LSKPPDDYWQEIRTVQAMHEVVQGSRLKYDDVVASM 568 (591)
Q Consensus 496 ~i~~~~lp~~ai~lld~a~a~~~~~~~~~~~~~~i~~-l~~~~~~~~~~~~~~~~~~d~~~a~~~~~~~~~~~~ 568 (591)
. +..++++|+..+.. .+..... +.+.. +....+...+...+++..+|...+.++.+...+.+.
T Consensus 214 d------lr~al~~LekL~~y---~~~~It~-e~V~~ll~~s~~~~vf~Lidal~~~d~~~al~~l~~L~~~g~ 277 (585)
T PRK14950 214 S------MRDAENLLQQLATT---YGGEISL-SQVQSLLGISGDEEVKALAEALLAKDLKAALRTLNAVAADGA 277 (585)
T ss_pred C------HHHHHHHHHHHHHh---cCCCCCH-HHHHHHhcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 5 44588888876532 1111112 23333 333455567778888999999999998877765443
No 63
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.80 E-value=3.4e-18 Score=181.12 Aligned_cols=249 Identities=19% Similarity=0.179 Sum_probs=176.3
Q ss_pred hhcccccccCCCCccCCcHHHHHHHHHHHHhcCCCC-CeEecCCCCcHHHHHHHHHHHHHhCCCCcc-------------
Q 007723 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPVF------------- 343 (591)
Q Consensus 278 ~~l~~~~r~~~~~~vvG~~~~i~~l~~~L~~~~~~~-ilL~GppGvGKT~la~~lA~~l~~~~~p~~------------- 343 (591)
.+|++++||..|++++|++..++.+.+.+..+..++ +||+||||+|||++|+.+++.+.+...+..
T Consensus 2 ~~~~~~~rp~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~ 81 (355)
T TIGR02397 2 QVLARKYRPQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEIN 81 (355)
T ss_pred ccHHHHhCCCcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHh
Confidence 478999999999999999999999999988766554 689999999999999999999875432110
Q ss_pred -ccCceEEEeehhhhhccccccchHHHHHHHHHHHHHh----cCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhccc
Q 007723 344 -LLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPS 418 (591)
Q Consensus 344 -~~~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~~----~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~ 418 (591)
.....++.++... ..+ ...++.+++.+.. .++.|++|||+|.+ ....++.|+..
T Consensus 82 ~~~~~~~~~~~~~~------~~~--~~~~~~l~~~~~~~p~~~~~~vviidea~~l-------------~~~~~~~Ll~~ 140 (355)
T TIGR02397 82 SGSSLDVIEIDAAS------NNG--VDDIREILDNVKYAPSSGKYKVYIIDEVHML-------------SKSAFNALLKT 140 (355)
T ss_pred cCCCCCEEEeeccc------cCC--HHHHHHHHHHHhcCcccCCceEEEEeChhhc-------------CHHHHHHHHHH
Confidence 0012344443221 111 1224555555432 35679999999999 45567888888
Q ss_pred ccC--CcEEEEecCChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHh
Q 007723 419 LGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (591)
Q Consensus 419 le~--g~v~lI~att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~ 496 (591)
++. ..+++|.+++... .+.+++.+||..+.+.+|+.+++.+++..++.+. ++.+++++++.++..+.+.
T Consensus 141 le~~~~~~~lIl~~~~~~-----~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~----g~~i~~~a~~~l~~~~~g~ 211 (355)
T TIGR02397 141 LEEPPEHVVFILATTEPH-----KIPATILSRCQRFDFKRIPLEDIVERLKKILDKE----GIKIEDEALELIARAADGS 211 (355)
T ss_pred HhCCccceeEEEEeCCHH-----HHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHcCCC
Confidence 874 4566676665432 3457899999999999999999999998777654 8899999999999988654
Q ss_pred hhcCCCcHHHHHHHHHHhhHhhhhhhccchhhhhhhhcC-ChHHHHHHHHHHhhcchHHHHhhchhhHhhh
Q 007723 497 ISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSK-PPDDYWQEIRTVQAMHEVVQGSRLKYDDVVA 566 (591)
Q Consensus 497 i~~~~lp~~ai~lld~a~a~~~~~~~~~~~~~~i~~l~~-~~~~~~~~~~~~~~~~d~~~a~~~~~~~~~~ 566 (591)
+..+++.++.++.... .....+.|.++.. ..+...+....++..+|..+|..+.+...+.
T Consensus 212 ------~~~a~~~lekl~~~~~----~~it~~~v~~~~~~~~~~~i~~l~~ai~~~~~~~a~~~~~~l~~~ 272 (355)
T TIGR02397 212 ------LRDALSLLDQLISFGN----GNITYEDVNELLGLVDDEKLIELLEAILNKDTAEALKILDEILES 272 (355)
T ss_pred ------hHHHHHHHHHHHhhcC----CCCCHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 4568888888775321 1112233333333 3444566667788889999888887766553
No 64
>CHL00181 cbbX CbbX; Provisional
Probab=99.79 E-value=7.8e-18 Score=172.42 Aligned_cols=216 Identities=18% Similarity=0.255 Sum_probs=153.6
Q ss_pred ccCCcHHHHHHHHHHHH--------h-------cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehh
Q 007723 291 PVIGRETEIQRIIQILC--------R-------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMG 355 (591)
Q Consensus 291 ~vvG~~~~i~~l~~~L~--------~-------~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~ 355 (591)
+++|.++..+++.++.. . ....|++|+||||||||++|+++++.+...+ ......++.++..
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g---~~~~~~~~~v~~~ 100 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLG---YIKKGHLLTVTRD 100 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcC---CCCCCceEEecHH
Confidence 58999887776655431 1 1234689999999999999999999875433 1223457788877
Q ss_pred hhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccC--CcEEEEecCChh
Q 007723 356 LLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQCIASTTQD 433 (591)
Q Consensus 356 ~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~--g~v~lI~att~~ 433 (591)
.++.. +.|+.+..++.+++. +.++||||||+|.|...+.. ...+.++++.|...|+. +.+++|++++.+
T Consensus 101 ~l~~~--~~g~~~~~~~~~l~~---a~ggVLfIDE~~~l~~~~~~----~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~ 171 (287)
T CHL00181 101 DLVGQ--YIGHTAPKTKEVLKK---AMGGVLFIDEAYYLYKPDNE----RDYGSEAIEILLQVMENQRDDLVVIFAGYKD 171 (287)
T ss_pred HHHHH--HhccchHHHHHHHHH---ccCCEEEEEccchhccCCCc----cchHHHHHHHHHHHHhcCCCCEEEEEeCCcH
Confidence 66532 455555555555554 45679999999999643221 12356788888888864 578999999887
Q ss_pred HHHhhhcccHHHHccCc-ceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhhhcCCCc--HHHHHHH
Q 007723 434 EHRTQFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLP--DKAIDLV 510 (591)
Q Consensus 434 e~~~~~~~d~aL~~Rf~-~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i~~~~lp--~~ai~ll 510 (591)
....++..+|+|.+||. .|.|++++.+++.+|+..++.+. +..+++++...+..+..+......+. .....++
T Consensus 172 ~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~----~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~v 247 (287)
T CHL00181 172 RMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQ----QYQLTPEAEKALLDYIKKRMEQPLFANARSVRNAL 247 (287)
T ss_pred HHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHh----cCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence 76667778899999998 69999999999999998887765 77899998888877765433222233 3556778
Q ss_pred HHHhhHhhhhhh
Q 007723 511 DEAGSRAHIELF 522 (591)
Q Consensus 511 d~a~a~~~~~~~ 522 (591)
+.+..+...+-.
T Consensus 248 e~~~~~~~~r~~ 259 (287)
T CHL00181 248 DRARMRQANRIF 259 (287)
T ss_pred HHHHHHHHHHHH
Confidence 777765444433
No 65
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.79 E-value=2.7e-17 Score=189.19 Aligned_cols=178 Identities=19% Similarity=0.265 Sum_probs=127.2
Q ss_pred ccCCcHHHHHHHHHHHHhc---------CCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhc--
Q 007723 291 PVIGRETEIQRIIQILCRR---------TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA-- 359 (591)
Q Consensus 291 ~vvG~~~~i~~l~~~L~~~---------~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~-- 359 (591)
.++||++.++.+...+.+. ...+++|+||+|||||++|++||+.+ ++.++.+|++.+..
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l----------~~~~~~~d~se~~~~~ 524 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL----------GVHLERFDMSEYMEKH 524 (731)
T ss_pred ceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh----------cCCeEEEeCchhhhcc
Confidence 4899999999998887652 12357899999999999999999987 45667777765432
Q ss_pred ------cc--cccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCC---------
Q 007723 360 ------GA--KERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG--------- 422 (591)
Q Consensus 360 ------g~--~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g--------- 422 (591)
|. .|.|.-+ ...+.+.++..+..||||||++.+ ..++++.|+++++.|
T Consensus 525 ~~~~lig~~~gyvg~~~--~~~l~~~~~~~p~~VvllDEieka-------------~~~~~~~Ll~~ld~g~~~d~~g~~ 589 (731)
T TIGR02639 525 TVSRLIGAPPGYVGFEQ--GGLLTEAVRKHPHCVLLLDEIEKA-------------HPDIYNILLQVMDYATLTDNNGRK 589 (731)
T ss_pred cHHHHhcCCCCCcccch--hhHHHHHHHhCCCeEEEEechhhc-------------CHHHHHHHHHhhccCeeecCCCcc
Confidence 11 1222111 122334445567889999999998 678999999998765
Q ss_pred ----cEEEEecCChhH--HH----------------h--hhcccHHHHccCc-ceeecCCCHHHHHHHHHHHHHHHHh--
Q 007723 423 ----ELQCIASTTQDE--HR----------------T--QFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEA-- 475 (591)
Q Consensus 423 ----~v~lI~att~~e--~~----------------~--~~~~d~aL~~Rf~-~i~i~~p~~~e~~~iL~~~~~~~~~-- 475 (591)
+.++|+|+|... .. . .-...|.|.+|++ +|.|.+.+.++..+|+.....++..
T Consensus 590 vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l 669 (731)
T TIGR02639 590 ADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSKQL 669 (731)
T ss_pred cCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 245777776531 00 0 0013588999997 6889999999999999887665432
Q ss_pred -hc--CCCCcHHHHHHHHHHh
Q 007723 476 -HH--NCKFTLEAINAAVHLS 493 (591)
Q Consensus 476 -~~--~i~i~~~al~~l~~~s 493 (591)
.+ .+.+++++++++++.+
T Consensus 670 ~~~~~~l~i~~~a~~~La~~~ 690 (731)
T TIGR02639 670 NEKNIKLELTDDAKKYLAEKG 690 (731)
T ss_pred HhCCCeEEeCHHHHHHHHHhC
Confidence 23 4688999999999864
No 66
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.79 E-value=4e-18 Score=181.53 Aligned_cols=250 Identities=18% Similarity=0.153 Sum_probs=174.7
Q ss_pred hhcccccccCCCCccCCcHHHHHHHHHHHHhcCC-CCCeEecCCCCcHHHHHHHHHHHHHhCCCCcccc--CceEEEeeh
Q 007723 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTK-NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLL--SKRIMSLDM 354 (591)
Q Consensus 278 ~~l~~~~r~~~~~~vvG~~~~i~~l~~~L~~~~~-~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~--~~~~~~ld~ 354 (591)
..|.++|||.+|++++|++..++.+.+.+..+.. ++++|+||||+|||++++.+++.+.+...+.... +..++.++.
T Consensus 5 ~~~~~k~rP~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~ 84 (367)
T PRK14970 5 VVSARKYRPQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDA 84 (367)
T ss_pred HHHHHHHCCCcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEecc
Confidence 4688999999999999999999999999987654 4678999999999999999999986643221111 223333332
Q ss_pred hhhhccccccchHHHHHHHHHHHHHh----cCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccC--CcEEEEe
Q 007723 355 GLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQCIA 428 (591)
Q Consensus 355 ~~l~~g~~~~g~~~~~i~~i~~~~~~----~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~--g~v~lI~ 428 (591)
. ...+ .+.++.+++++.. .+..|+||||+|.+ ....++.|+..++. ...++|+
T Consensus 85 ~------~~~~--~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l-------------~~~~~~~ll~~le~~~~~~~~Il 143 (367)
T PRK14970 85 A------SNNS--VDDIRNLIDQVRIPPQTGKYKIYIIDEVHML-------------SSAAFNAFLKTLEEPPAHAIFIL 143 (367)
T ss_pred c------cCCC--HHHHHHHHHHHhhccccCCcEEEEEeChhhc-------------CHHHHHHHHHHHhCCCCceEEEE
Confidence 1 1111 1234555554432 34679999999998 34456777777764 3456666
Q ss_pred cCChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhhhcCCCcHHHHH
Q 007723 429 STTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAID 508 (591)
Q Consensus 429 att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i~~~~lp~~ai~ 508 (591)
+++.. ..+.+++.+||..+.+.+|+.+++..++...+.+. ++.+++++++.++..+.+.+ +.++.
T Consensus 144 ~~~~~-----~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~----g~~i~~~al~~l~~~~~gdl------r~~~~ 208 (367)
T PRK14970 144 ATTEK-----HKIIPTILSRCQIFDFKRITIKDIKEHLAGIAVKE----GIKFEDDALHIIAQKADGAL------RDALS 208 (367)
T ss_pred EeCCc-----ccCCHHHHhcceeEecCCccHHHHHHHHHHHHHHc----CCCCCHHHHHHHHHhCCCCH------HHHHH
Confidence 66543 24568999999999999999999999998777654 89999999999999887553 45888
Q ss_pred HHHHHhhHhhhhhhccchhhhhhhh-cCChHHHHHHHHHHhhcchHHHHhhchhhHhhhc
Q 007723 509 LVDEAGSRAHIELFKRKKEQQTCIL-SKPPDDYWQEIRTVQAMHEVVQGSRLKYDDVVAS 567 (591)
Q Consensus 509 lld~a~a~~~~~~~~~~~~~~i~~l-~~~~~~~~~~~~~~~~~~d~~~a~~~~~~~~~~~ 567 (591)
.++..+.... ... ....+..+ ....+...++...++..+|+.++..+.+.....+
T Consensus 209 ~lekl~~y~~---~~i-t~~~v~~~~~~~~~~~if~l~~ai~~~~~~~a~~~~~~l~~~~ 264 (367)
T PRK14970 209 IFDRVVTFCG---KNI-TRQAVTENLNILDYDTYINVTDLILENKIPELLLAFNEILRKG 264 (367)
T ss_pred HHHHHHHhcC---CCC-CHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 8887664321 111 11223333 3344455666778888889988888776655433
No 67
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.78 E-value=5.7e-18 Score=176.50 Aligned_cols=245 Identities=16% Similarity=0.175 Sum_probs=169.8
Q ss_pred hhcccccccCCCCccCCcHHHHHHHHHHHHhcCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhh
Q 007723 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLL 357 (591)
Q Consensus 278 ~~l~~~~r~~~~~~vvG~~~~i~~l~~~L~~~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l 357 (591)
..|.++|||.+|++++|+++.++.+...+.....++++|+||||+|||++++.+++.+..... ...++.++.+..
T Consensus 5 ~~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~-----~~~~i~~~~~~~ 79 (319)
T PRK00440 5 EIWVEKYRPRTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGEDW-----RENFLELNASDE 79 (319)
T ss_pred CccchhhCCCcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCcc-----ccceEEeccccc
Confidence 579999999999999999999999999998877788999999999999999999998854321 223344432211
Q ss_pred hccccccchHHHHHHHHHHHH-H-hcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhccccc--CCcEEEEecCChh
Q 007723 358 MAGAKERGELEARVTTLISEI-Q-KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG--RGELQCIASTTQD 433 (591)
Q Consensus 358 ~~g~~~~g~~~~~i~~i~~~~-~-~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le--~g~v~lI~att~~ 433 (591)
. ....+...+..+.... . .....+++|||+|.+ ..+.++.|...++ .....+|.+++..
T Consensus 80 ~----~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l-------------~~~~~~~L~~~le~~~~~~~lIl~~~~~ 142 (319)
T PRK00440 80 R----GIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNL-------------TSDAQQALRRTMEMYSQNTRFILSCNYS 142 (319)
T ss_pred c----chHHHHHHHHHHHhcCCCCCCCceEEEEeCcccC-------------CHHHHHHHHHHHhcCCCCCeEEEEeCCc
Confidence 0 0011112222222111 0 123569999999999 3344566666665 2345566655543
Q ss_pred HHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhhhcCCCcHHHHHHHHHH
Q 007723 434 EHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEA 513 (591)
Q Consensus 434 e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i~~~~lp~~ai~lld~a 513 (591)
. .+.+++.+||..+.+.+++.+++..++..++.+. ++.+++++++.+++.+.+. +..+++.|+.+
T Consensus 143 ~-----~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~~----~~~i~~~al~~l~~~~~gd------~r~~~~~l~~~ 207 (319)
T PRK00440 143 S-----KIIDPIQSRCAVFRFSPLKKEAVAERLRYIAENE----GIEITDDALEAIYYVSEGD------MRKAINALQAA 207 (319)
T ss_pred c-----ccchhHHHHhheeeeCCCCHHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHcCCC------HHHHHHHHHHH
Confidence 1 3457799999999999999999999988777654 8999999999999998765 44589999877
Q ss_pred hhHhhhhhhccchhhhhhhhc-CChHHHHHHHHHHhhcchHHHHhhchhhHh
Q 007723 514 GSRAHIELFKRKKEQQTCILS-KPPDDYWQEIRTVQAMHEVVQGSRLKYDDV 564 (591)
Q Consensus 514 ~a~~~~~~~~~~~~~~i~~l~-~~~~~~~~~~~~~~~~~d~~~a~~~~~~~~ 564 (591)
+.. + .....+.|..+. .......+....++..+++.+|..+.++.-
T Consensus 208 ~~~----~-~~it~~~v~~~~~~~~~~~i~~l~~~~~~~~~~~a~~~l~~ll 254 (319)
T PRK00440 208 AAT----G-KEVTEEAVYKITGTARPEEIREMIELALNGDFTEAREKLRDLM 254 (319)
T ss_pred HHc----C-CCCCHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 742 1 122223344443 334446667778888899999988877653
No 68
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.78 E-value=5.6e-18 Score=189.61 Aligned_cols=247 Identities=17% Similarity=0.111 Sum_probs=175.5
Q ss_pred hhcccccccCCCCccCCcHHHHHHHHHHHHhcCC-CCCeEecCCCCcHHHHHHHHHHHHHhCCCC----ccccCc-----
Q 007723 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTK-NNPILLGESGVGKTAIAEGLAIRIVQAEVP----VFLLSK----- 347 (591)
Q Consensus 278 ~~l~~~~r~~~~~~vvG~~~~i~~l~~~L~~~~~-~~ilL~GppGvGKT~la~~lA~~l~~~~~p----~~~~~~----- 347 (591)
.+|.++|||..|++++|++..++.|...+...+. +++||+||+|+|||++|+.+|+.+.+.... .....|
T Consensus 4 ~pl~~kyRP~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~ 83 (620)
T PRK14948 4 EPLHHKYRPQRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRA 83 (620)
T ss_pred chHHHHhCCCcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHH
Confidence 5789999999999999999999999999887654 678999999999999999999999763211 001111
Q ss_pred -------eEEEeehhhhhccccccchHHHHHHHHHHHHHh----cCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhc
Q 007723 348 -------RIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLK 416 (591)
Q Consensus 348 -------~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~~----~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~ 416 (591)
.+++++.. .....+.++.+++.+.. ....|+||||+|.| +.+.+|.|+
T Consensus 84 i~~g~h~D~~ei~~~--------~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~L-------------t~~a~naLL 142 (620)
T PRK14948 84 IAAGNALDVIEIDAA--------SNTGVDNIRELIERAQFAPVQARWKVYVIDECHML-------------STAAFNALL 142 (620)
T ss_pred HhcCCCccEEEEecc--------ccCCHHHHHHHHHHHhhChhcCCceEEEEECcccc-------------CHHHHHHHH
Confidence 23333321 11123456677665542 45679999999999 667889999
Q ss_pred ccccC--CcEEEEecCChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhH
Q 007723 417 PSLGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494 (591)
Q Consensus 417 ~~le~--g~v~lI~att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~ 494 (591)
..|++ +.+++|++|+... .+.++|++||..+.|..++.++....|..++.+. ++.++++++..+++++.
T Consensus 143 K~LEePp~~tvfIL~t~~~~-----~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~ke----gi~is~~al~~La~~s~ 213 (620)
T PRK14948 143 KTLEEPPPRVVFVLATTDPQ-----RVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKE----SIEIEPEALTLVAQRSQ 213 (620)
T ss_pred HHHhcCCcCeEEEEEeCChh-----hhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHh----CCCCCHHHHHHHHHHcC
Confidence 99985 5677887776532 3558999999999999999999988888777755 88999999999999987
Q ss_pred HhhhcCCCcHHHHHHHHHHhhHhhhhhhccchhhhhhhhcCC-hHHHHHHHHHHhhcchHHHHhhchhhHhh
Q 007723 495 RYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKP-PDDYWQEIRTVQAMHEVVQGSRLKYDDVV 565 (591)
Q Consensus 495 r~i~~~~lp~~ai~lld~a~a~~~~~~~~~~~~~~i~~l~~~-~~~~~~~~~~~~~~~d~~~a~~~~~~~~~ 565 (591)
+.+ +.|+.+|+...... .....+.+.++... .+...+....++..+|...+..+..+..+
T Consensus 214 G~l------r~A~~lLeklsL~~-----~~It~e~V~~lvg~~~e~~i~~Ll~ai~~~d~~~al~~~~~Ll~ 274 (620)
T PRK14948 214 GGL------RDAESLLDQLSLLP-----GPITPEAVWDLLGAVPEQDLLNLLKALASNDPESLLDSCRQLLD 274 (620)
T ss_pred CCH------HHHHHHHHHHHhcc-----CCCCHHHHHHHhcCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 664 44888888654211 11111233333333 23344556667777787777776655543
No 69
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=7.5e-19 Score=183.85 Aligned_cols=169 Identities=24% Similarity=0.284 Sum_probs=124.4
Q ss_pred cCCCCccCCcHHHH---HHHHHHHHhc---------CCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEee
Q 007723 286 EELIDPVIGRETEI---QRIIQILCRR---------TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (591)
Q Consensus 286 ~~~~~~vvG~~~~i---~~l~~~L~~~---------~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld 353 (591)
.-+|+++.|.|+.. +.+++.|..+ -+.+|||+||||||||.||+++|.+. ++| |++..
T Consensus 300 nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA---~VP-------FF~~s 369 (752)
T KOG0734|consen 300 NVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA---GVP-------FFYAS 369 (752)
T ss_pred ccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc---CCC-------eEecc
Confidence 45799999999854 5555555543 24689999999999999999999865 444 44433
Q ss_pred hhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhccccc----CCcEEEEec
Q 007723 354 MGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG----RGELQCIAS 429 (591)
Q Consensus 354 ~~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le----~g~v~lI~a 429 (591)
.+++- ..+.|.-..+++++|..+++..++||||||||.+-+++...+. .......|.|+..|. +..+++|++
T Consensus 370 GSEFd--Em~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~--~y~kqTlNQLLvEmDGF~qNeGiIvigA 445 (752)
T KOG0734|consen 370 GSEFD--EMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQ--HYAKQTLNQLLVEMDGFKQNEGIIVIGA 445 (752)
T ss_pred ccchh--hhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHH--HHHHHHHHHHHHHhcCcCcCCceEEEec
Confidence 33221 2245666788999999999999999999999999555433111 012233455555553 346999999
Q ss_pred CChhHHHhhhcccHHHHc--cCc-ceeecCCCHHHHHHHHHHHHHHH
Q 007723 430 TTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKY 473 (591)
Q Consensus 430 tt~~e~~~~~~~d~aL~~--Rf~-~i~i~~p~~~e~~~iL~~~~~~~ 473 (591)
||.++ .+|++|.| ||+ .|.++.|+..-+.+||.....+.
T Consensus 446 TNfpe-----~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki 487 (752)
T KOG0734|consen 446 TNFPE-----ALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKI 487 (752)
T ss_pred cCChh-----hhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcC
Confidence 99976 68999999 998 59999999999999998777654
No 70
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.78 E-value=4.5e-18 Score=178.29 Aligned_cols=189 Identities=20% Similarity=0.255 Sum_probs=135.9
Q ss_pred cccccccCCCCccCCcHHHHHHHHHHHHh-----cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeeh
Q 007723 280 LTARASEELIDPVIGRETEIQRIIQILCR-----RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (591)
Q Consensus 280 l~~~~r~~~~~~vvG~~~~i~~l~~~L~~-----~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~ 354 (591)
+..++||..|++++||+++++.+...+.. ...++++|+||||||||++|+.+|+.+ +..+.....
T Consensus 15 ~~~~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l----------~~~~~~~~~ 84 (328)
T PRK00080 15 IERSLRPKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM----------GVNIRITSG 84 (328)
T ss_pred hhhhcCcCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh----------CCCeEEEec
Confidence 36788999999999999999998877653 234689999999999999999999988 233333322
Q ss_pred hhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccC-------------
Q 007723 355 GLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR------------- 421 (591)
Q Consensus 355 ~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~------------- 421 (591)
..+. ..++ +..++..+ ..+.||||||||.+. ....+.|...++.
T Consensus 85 ~~~~----~~~~----l~~~l~~l--~~~~vl~IDEi~~l~-------------~~~~e~l~~~~e~~~~~~~l~~~~~~ 141 (328)
T PRK00080 85 PALE----KPGD----LAAILTNL--EEGDVLFIDEIHRLS-------------PVVEEILYPAMEDFRLDIMIGKGPAA 141 (328)
T ss_pred cccc----ChHH----HHHHHHhc--ccCCEEEEecHhhcc-------------hHHHHHHHHHHHhcceeeeeccCccc
Confidence 2110 1112 23333332 346799999999992 2333444433331
Q ss_pred -------CcEEEEecCChhHHHhhhcccHHHHccCc-ceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHh
Q 007723 422 -------GELQCIASTTQDEHRTQFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLS 493 (591)
Q Consensus 422 -------g~v~lI~att~~e~~~~~~~d~aL~~Rf~-~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s 493 (591)
..+.+|++||... .++++|++||. .+.+.+|+.++..++|+...... ++.+++++++.+++.+
T Consensus 142 ~~~~~~l~~~~li~at~~~~-----~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~----~~~~~~~~~~~ia~~~ 212 (328)
T PRK00080 142 RSIRLDLPPFTLIGATTRAG-----LLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARIL----GVEIDEEGALEIARRS 212 (328)
T ss_pred cceeecCCCceEEeecCCcc-----cCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHc----CCCcCHHHHHHHHHHc
Confidence 2367888888753 46789999996 58999999999999998776654 8999999999999998
Q ss_pred HHhhhcCCCcHHHHHHHHHHhhH
Q 007723 494 ARYISDRYLPDKAIDLVDEAGSR 516 (591)
Q Consensus 494 ~r~i~~~~lp~~ai~lld~a~a~ 516 (591)
.++ |..+..+++.+...
T Consensus 213 ~G~------pR~a~~~l~~~~~~ 229 (328)
T PRK00080 213 RGT------PRIANRLLRRVRDF 229 (328)
T ss_pred CCC------chHHHHHHHHHHHH
Confidence 766 55677888765543
No 71
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.77 E-value=8.5e-18 Score=182.80 Aligned_cols=205 Identities=21% Similarity=0.260 Sum_probs=150.6
Q ss_pred CCCCccCCcHHHHHHHHHHHHh----------cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhh
Q 007723 287 ELIDPVIGRETEIQRIIQILCR----------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGL 356 (591)
Q Consensus 287 ~~~~~vvG~~~~i~~l~~~L~~----------~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~ 356 (591)
.+|+++.|.+...+.+.+.... +.+.++||+||||||||.+|+++|..+ +..++.++++.
T Consensus 225 ~~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~----------~~~~~~l~~~~ 294 (489)
T CHL00195 225 EKISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW----------QLPLLRLDVGK 294 (489)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh----------CCCEEEEEhHH
Confidence 4688899988777666542211 234679999999999999999999987 67789999888
Q ss_pred hhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhccccc--CCcEEEEecCChhH
Q 007723 357 LMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG--RGELQCIASTTQDE 434 (591)
Q Consensus 357 l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le--~g~v~lI~att~~e 434 (591)
+.. ++.|+.+.+++.+|..+....++||||||||.++..... .+..+....+.+.|+..+. ...+.+|+|||..
T Consensus 295 l~~--~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~-~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~- 370 (489)
T CHL00195 295 LFG--GIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSES-KGDSGTTNRVLATFITWLSEKKSPVFVVATANNI- 370 (489)
T ss_pred hcc--cccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccC-CCCchHHHHHHHHHHHHHhcCCCceEEEEecCCh-
Confidence 774 478899999999999988888999999999998764221 1112233445555665554 3568888888875
Q ss_pred HHhhhcccHHHHc--cCc-ceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhhhcCCCcHHHHHHHH
Q 007723 435 HRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVD 511 (591)
Q Consensus 435 ~~~~~~~d~aL~~--Rf~-~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i~~~~lp~~ai~lld 511 (591)
..+|+++.| ||+ .+.++.|+.+++.+|++.+..++. .....+..++.+++.+.+|-.. ..-.++.
T Consensus 371 ----~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~---~~~~~~~dl~~La~~T~GfSGA-----dI~~lv~ 438 (489)
T CHL00195 371 ----DLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFR---PKSWKKYDIKKLSKLSNKFSGA-----EIEQSII 438 (489)
T ss_pred ----hhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcC---CCcccccCHHHHHhhcCCCCHH-----HHHHHHH
Confidence 368999988 998 589999999999999988877651 1123345578888888777433 3445666
Q ss_pred HHhhHh
Q 007723 512 EAGSRA 517 (591)
Q Consensus 512 ~a~a~~ 517 (591)
+|+..+
T Consensus 439 eA~~~A 444 (489)
T CHL00195 439 EAMYIA 444 (489)
T ss_pred HHHHHH
Confidence 665433
No 72
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.77 E-value=1.6e-16 Score=184.79 Aligned_cols=181 Identities=19% Similarity=0.250 Sum_probs=126.9
Q ss_pred ccCCcHHHHHHHHHHHHhc-------CC--CCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhc--
Q 007723 291 PVIGRETEIQRIIQILCRR-------TK--NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA-- 359 (591)
Q Consensus 291 ~vvG~~~~i~~l~~~L~~~-------~~--~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~-- 359 (591)
.|+||++.++.+...+.+. .+ .+++|+||+|||||++|++||+.+.+. ...++.+|++.+..
T Consensus 510 ~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~-------~~~~~~~d~s~~~~~~ 582 (821)
T CHL00095 510 RIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGS-------EDAMIRLDMSEYMEKH 582 (821)
T ss_pred cCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCC-------ccceEEEEchhccccc
Confidence 4899999999998887642 11 246899999999999999999988542 34567777765531
Q ss_pred ------cc--cccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCC---------
Q 007723 360 ------GA--KERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG--------- 422 (591)
Q Consensus 360 ------g~--~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g--------- 422 (591)
|. .|.|--+ ...+.+.+...+..|++|||++.+ ..+++|.|++.++.|
T Consensus 583 ~~~~l~g~~~gyvg~~~--~~~l~~~~~~~p~~VvllDeieka-------------~~~v~~~Llq~le~g~~~d~~g~~ 647 (821)
T CHL00095 583 TVSKLIGSPPGYVGYNE--GGQLTEAVRKKPYTVVLFDEIEKA-------------HPDIFNLLLQILDDGRLTDSKGRT 647 (821)
T ss_pred cHHHhcCCCCcccCcCc--cchHHHHHHhCCCeEEEECChhhC-------------CHHHHHHHHHHhccCceecCCCcE
Confidence 11 1222111 122344455567789999999998 788999999999865
Q ss_pred ----cEEEEecCChhH-----------------------HHh---h------hcccHHHHccCc-ceeecCCCHHHHHHH
Q 007723 423 ----ELQCIASTTQDE-----------------------HRT---Q------FEKDKALARRFQ-PVLISEPSQEDAVRI 465 (591)
Q Consensus 423 ----~v~lI~att~~e-----------------------~~~---~------~~~d~aL~~Rf~-~i~i~~p~~~e~~~i 465 (591)
+.++|+|+|... |.. . -...|.|.+|++ +|.|.+.+.++..+|
T Consensus 648 v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~I 727 (821)
T CHL00095 648 IDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEI 727 (821)
T ss_pred EecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHH
Confidence 346777766421 000 0 003478999995 789999999999999
Q ss_pred HHHHHHHHH---hhc--CCCCcHHHHHHHHHHh
Q 007723 466 LLGLREKYE---AHH--NCKFTLEAINAAVHLS 493 (591)
Q Consensus 466 L~~~~~~~~---~~~--~i~i~~~al~~l~~~s 493 (591)
+...+..+. ..+ .+.+++++++++++..
T Consensus 728 v~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~ 760 (821)
T CHL00095 728 AEIMLKNLFKRLNEQGIQLEVTERIKTLLIEEG 760 (821)
T ss_pred HHHHHHHHHHHHHHCCcEEEECHHHHHHHHHhc
Confidence 987665542 223 4678999999999864
No 73
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.77 E-value=1.1e-17 Score=173.50 Aligned_cols=183 Identities=22% Similarity=0.283 Sum_probs=129.9
Q ss_pred CCCCccCCcHHHHHHHHHHHHh-----cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhccc
Q 007723 287 ELIDPVIGRETEIQRIIQILCR-----RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGA 361 (591)
Q Consensus 287 ~~~~~vvG~~~~i~~l~~~L~~-----~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~ 361 (591)
++|++|+||+++++.|..++.. ...++++|+||||||||++|+++++.+. ..+...+.....
T Consensus 1 ~~~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~----------~~~~~~~~~~~~--- 67 (305)
T TIGR00635 1 KLLAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMG----------VNLKITSGPALE--- 67 (305)
T ss_pred CCHHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhC----------CCEEEeccchhc---
Confidence 3688999999999998887763 3346799999999999999999999872 223332221111
Q ss_pred cccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCC-------------------
Q 007723 362 KERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG------------------- 422 (591)
Q Consensus 362 ~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g------------------- 422 (591)
..+++ ...+..+ ..+.+|||||+|.+ ....++.|...+++.
T Consensus 68 -~~~~l----~~~l~~~--~~~~vl~iDEi~~l-------------~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~ 127 (305)
T TIGR00635 68 -KPGDL----AAILTNL--EEGDVLFIDEIHRL-------------SPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDL 127 (305)
T ss_pred -CchhH----HHHHHhc--ccCCEEEEehHhhh-------------CHHHHHHhhHHHhhhheeeeeccCccccceeecC
Confidence 11222 2222222 34579999999999 233445555554322
Q ss_pred -cEEEEecCChhHHHhhhcccHHHHccCc-ceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhhhcC
Q 007723 423 -ELQCIASTTQDEHRTQFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500 (591)
Q Consensus 423 -~v~lI~att~~e~~~~~~~d~aL~~Rf~-~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i~~~ 500 (591)
.+.+|++||... .+++++.+||. .+.+.+|+.+++.++++..+... ++.+++++++++++.+.++
T Consensus 128 ~~~~li~~t~~~~-----~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~----~~~~~~~al~~ia~~~~G~---- 194 (305)
T TIGR00635 128 PPFTLVGATTRAG-----MLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLL----NVEIEPEAALEIARRSRGT---- 194 (305)
T ss_pred CCeEEEEecCCcc-----ccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHh----CCCcCHHHHHHHHHHhCCC----
Confidence 267888887752 46789999996 47999999999999998777644 8899999999999998776
Q ss_pred CCcHHHHHHHHHHhhHh
Q 007723 501 YLPDKAIDLVDEAGSRA 517 (591)
Q Consensus 501 ~lp~~ai~lld~a~a~~ 517 (591)
|..++.+++.+...+
T Consensus 195 --pR~~~~ll~~~~~~a 209 (305)
T TIGR00635 195 --PRIANRLLRRVRDFA 209 (305)
T ss_pred --cchHHHHHHHHHHHH
Confidence 455777887765443
No 74
>PRK04195 replication factor C large subunit; Provisional
Probab=99.76 E-value=9.6e-18 Score=184.44 Aligned_cols=193 Identities=16% Similarity=0.216 Sum_probs=143.6
Q ss_pred hhcccccccCCCCccCCcHHHHHHHHHHHHhcC----CCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEee
Q 007723 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRT----KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (591)
Q Consensus 278 ~~l~~~~r~~~~~~vvG~~~~i~~l~~~L~~~~----~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld 353 (591)
.+|+++|||.+|++++|+++.++.+..++.... .+++||+||||||||++|+++|+.+ +..++.++
T Consensus 2 ~~W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el----------~~~~ieln 71 (482)
T PRK04195 2 MPWVEKYRPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY----------GWEVIELN 71 (482)
T ss_pred CCchhhcCCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc----------CCCEEEEc
Confidence 479999999999999999999999999887532 5778999999999999999999987 45677776
Q ss_pred hhhhhccccccchHHHHHHHHHHHHHh------cCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCCcEEEE
Q 007723 354 MGLLMAGAKERGELEARVTTLISEIQK------SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCI 427 (591)
Q Consensus 354 ~~~l~~g~~~~g~~~~~i~~i~~~~~~------~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g~v~lI 427 (591)
.+... . ...+..++..... ..+.||||||+|.|.+.. .....+.|...++.....+|
T Consensus 72 asd~r----~----~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~---------d~~~~~aL~~~l~~~~~~iI 134 (482)
T PRK04195 72 ASDQR----T----ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNE---------DRGGARAILELIKKAKQPII 134 (482)
T ss_pred ccccc----c----HHHHHHHHHHhhccCcccCCCCeEEEEecCccccccc---------chhHHHHHHHHHHcCCCCEE
Confidence 54321 0 1123333333322 246799999999995321 12234556666665555566
Q ss_pred ecCChhHHHhhhcccH-HHHccCcceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhhhcCCCcHHH
Q 007723 428 ASTTQDEHRTQFEKDK-ALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKA 506 (591)
Q Consensus 428 ~att~~e~~~~~~~d~-aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i~~~~lp~~a 506 (591)
+++|.. ..... .|++||..|.|..|+..++..+|+.++... ++.+++++++.+++.+.+.++. +
T Consensus 135 li~n~~-----~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~e----gi~i~~eaL~~Ia~~s~GDlR~------a 199 (482)
T PRK04195 135 LTANDP-----YDPSLRELRNACLMIEFKRLSTRSIVPVLKRICRKE----GIECDDEALKEIAERSGGDLRS------A 199 (482)
T ss_pred EeccCc-----cccchhhHhccceEEEecCCCHHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHcCCCHHH------H
Confidence 666553 23444 789999999999999999999998887654 8999999999999998877654 7
Q ss_pred HHHHHH
Q 007723 507 IDLVDE 512 (591)
Q Consensus 507 i~lld~ 512 (591)
+..|+.
T Consensus 200 in~Lq~ 205 (482)
T PRK04195 200 INDLQA 205 (482)
T ss_pred HHHHHH
Confidence 777765
No 75
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.76 E-value=6.5e-17 Score=165.66 Aligned_cols=212 Identities=19% Similarity=0.203 Sum_probs=150.0
Q ss_pred ccCCcHHHHHHHHHHHHh---------------cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehh
Q 007723 291 PVIGRETEIQRIIQILCR---------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMG 355 (591)
Q Consensus 291 ~vvG~~~~i~~l~~~L~~---------------~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~ 355 (591)
.++|.++..+++.++... ....+++|+||||||||++|+++++.+..... .....++.++..
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~---~~~~~~v~v~~~ 99 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGY---VRKGHLVSVTRD 99 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCC---cccceEEEecHH
Confidence 479988877776554211 01247899999999999999999998865331 123457788877
Q ss_pred hhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccC--CcEEEEecCChh
Q 007723 356 LLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQCIASTTQD 433 (591)
Q Consensus 356 ~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~--g~v~lI~att~~ 433 (591)
.++. .+.|+.+..++.+++. ..+++|||||++.|...+.. .....++++.|...|+. +++++|++++.+
T Consensus 100 ~l~~--~~~g~~~~~~~~~~~~---a~~gvL~iDEi~~L~~~~~~----~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~ 170 (284)
T TIGR02880 100 DLVG--QYIGHTAPKTKEILKR---AMGGVLFIDEAYYLYRPDNE----RDYGQEAIEILLQVMENQRDDLVVILAGYKD 170 (284)
T ss_pred HHhH--hhcccchHHHHHHHHH---ccCcEEEEechhhhccCCCc----cchHHHHHHHHHHHHhcCCCCEEEEEeCCcH
Confidence 6653 3455555556666654 45689999999998533211 12356778888888864 578999999887
Q ss_pred HHHhhhcccHHHHccCc-ceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhhhcCCCc---HHHHHH
Q 007723 434 EHRTQFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLP---DKAIDL 509 (591)
Q Consensus 434 e~~~~~~~d~aL~~Rf~-~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i~~~~lp---~~ai~l 509 (591)
....++..+++|.+||. .|.|++++.+++..|+...+.+. +..+++++++.+..+....- ....| +...++
T Consensus 171 ~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~----~~~l~~~a~~~L~~~l~~~~-~~~~~GN~R~lrn~ 245 (284)
T TIGR02880 171 RMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQ----QYRFSAEAEEAFADYIALRR-TQPHFANARSIRNA 245 (284)
T ss_pred HHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHh----ccccCHHHHHHHHHHHHHhC-CCCCCChHHHHHHH
Confidence 66667778999999997 69999999999999998877765 67889999988877654321 11222 245567
Q ss_pred HHHHhhHhhh
Q 007723 510 VDEAGSRAHI 519 (591)
Q Consensus 510 ld~a~a~~~~ 519 (591)
++.++.+...
T Consensus 246 ve~~~~~~~~ 255 (284)
T TIGR02880 246 IDRARLRQAN 255 (284)
T ss_pred HHHHHHHHHH
Confidence 7777655443
No 76
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.75 E-value=4.7e-16 Score=177.18 Aligned_cols=205 Identities=18% Similarity=0.218 Sum_probs=135.2
Q ss_pred ccCCcHHHHHHHHHHHHhc---------CCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhh---
Q 007723 291 PVIGRETEIQRIIQILCRR---------TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM--- 358 (591)
Q Consensus 291 ~vvG~~~~i~~l~~~L~~~---------~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~--- 358 (591)
.|+||++.++.|...+.+. ...+++|+||||||||.+|+.+|..+ +.+++.+|++.+.
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l----------~~~~i~id~se~~~~~ 528 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL----------GIELLRFDMSEYMERH 528 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh----------CCCcEEeechhhcccc
Confidence 3899999999999987642 12467999999999999999999988 3456666666542
Q ss_pred -----ccc--cccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCC---------
Q 007723 359 -----AGA--KERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG--------- 422 (591)
Q Consensus 359 -----~g~--~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g--------- 422 (591)
.|. .|.|... -..+.+.+...+.+|||||||+.+ ..++++.|+++|+.|
T Consensus 529 ~~~~LiG~~~gyvg~~~--~g~L~~~v~~~p~sVlllDEieka-------------~~~v~~~LLq~ld~G~ltd~~g~~ 593 (758)
T PRK11034 529 TVSRLIGAPPGYVGFDQ--GGLLTDAVIKHPHAVLLLDEIEKA-------------HPDVFNLLLQVMDNGTLTDNNGRK 593 (758)
T ss_pred cHHHHcCCCCCcccccc--cchHHHHHHhCCCcEEEeccHhhh-------------hHHHHHHHHHHHhcCeeecCCCce
Confidence 121 1222110 011223344567789999999999 678999999988754
Q ss_pred ----cEEEEecCChhHH---H-----------------hhhcccHHHHccCc-ceeecCCCHHHHHHHHHHHHHHHHh--
Q 007723 423 ----ELQCIASTTQDEH---R-----------------TQFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEA-- 475 (591)
Q Consensus 423 ----~v~lI~att~~e~---~-----------------~~~~~d~aL~~Rf~-~i~i~~p~~~e~~~iL~~~~~~~~~-- 475 (591)
++++|+|||...- . -.....|.|.+|++ +|.|.+++.++..+|+...+..+..
T Consensus 594 vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l 673 (758)
T PRK11034 594 ADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQL 673 (758)
T ss_pred ecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3458888873210 0 00124589999998 6889999999999998876554432
Q ss_pred -h--cCCCCcHHHHHHHHHHhH-HhhhcCCCcHHHHHHHHHHhhHhhhh
Q 007723 476 -H--HNCKFTLEAINAAVHLSA-RYISDRYLPDKAIDLVDEAGSRAHIE 520 (591)
Q Consensus 476 -~--~~i~i~~~al~~l~~~s~-r~i~~~~lp~~ai~lld~a~a~~~~~ 520 (591)
. ..+.+++++++++++..- ..+..|.+-.-.-+.+....+..-+.
T Consensus 674 ~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~l~~~la~~il~ 722 (758)
T PRK11034 674 DQKGVSLEVSQEARDWLAEKGYDRAMGARPMARVIQDNLKKPLANELLF 722 (758)
T ss_pred HHCCCCceECHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHHHh
Confidence 2 345789999999997652 22233333333333444444444443
No 77
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.75 E-value=7.7e-17 Score=168.07 Aligned_cols=199 Identities=15% Similarity=0.206 Sum_probs=142.1
Q ss_pred hhcccccccCCCCccCCcHHHHHHHHHHHHhcCCCCCeE-ecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhh
Q 007723 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPIL-LGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGL 356 (591)
Q Consensus 278 ~~l~~~~r~~~~~~vvG~~~~i~~l~~~L~~~~~~~ilL-~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~ 356 (591)
..|++||||.+|++++|+++..+.+...+.....++++| +||||+|||++++++++.+ +..++.++...
T Consensus 9 ~~w~~kyrP~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~----------~~~~~~i~~~~ 78 (316)
T PHA02544 9 FMWEQKYRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV----------GAEVLFVNGSD 78 (316)
T ss_pred CcceeccCCCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh----------CccceEeccCc
Confidence 578999999999999999999999999988777677766 8999999999999999876 23455555433
Q ss_pred hhccccccchHHHHHHHHHHHHH-hcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccC--CcEEEEecCChh
Q 007723 357 LMAGAKERGELEARVTTLISEIQ-KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQCIASTTQD 433 (591)
Q Consensus 357 l~~g~~~~g~~~~~i~~i~~~~~-~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~--g~v~lI~att~~ 433 (591)
+ . .......+..+..... .....+|||||+|.+. ..+.++.|+..++. +.+.+|++++..
T Consensus 79 ---~-~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~------------~~~~~~~L~~~le~~~~~~~~Ilt~n~~ 141 (316)
T PHA02544 79 ---C-R-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLG------------LADAQRHLRSFMEAYSKNCSFIITANNK 141 (316)
T ss_pred ---c-c-HHHHHHHHHHHHHhhcccCCCeEEEEECccccc------------CHHHHHHHHHHHHhcCCCceEEEEcCCh
Confidence 1 0 1111122222222211 1356799999999881 22355667666663 567788877753
Q ss_pred HHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHH---hhcCCCCcHHHHHHHHHHhHHhhhcCCCcHHHHHHH
Q 007723 434 EHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYE---AHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLV 510 (591)
Q Consensus 434 e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~---~~~~i~i~~~al~~l~~~s~r~i~~~~lp~~ai~ll 510 (591)
..+.+++++||..+.+..|+.++...++..+..++. ...++.++++++..++..+.+.+ ..+++.+
T Consensus 142 -----~~l~~~l~sR~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~~d~------r~~l~~l 210 (316)
T PHA02544 142 -----NGIIEPLRSRCRVIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNFPDF------RRTINEL 210 (316)
T ss_pred -----hhchHHHHhhceEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCH------HHHHHHH
Confidence 246799999999999999999999888876655442 34688999999999998765443 2466666
Q ss_pred HHHh
Q 007723 511 DEAG 514 (591)
Q Consensus 511 d~a~ 514 (591)
+..+
T Consensus 211 ~~~~ 214 (316)
T PHA02544 211 QRYA 214 (316)
T ss_pred HHHH
Confidence 6443
No 78
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.74 E-value=5.8e-17 Score=173.26 Aligned_cols=199 Identities=22% Similarity=0.281 Sum_probs=144.3
Q ss_pred CCCCccCCcHHHHHHHHHHHHh-------------cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEee
Q 007723 287 ELIDPVIGRETEIQRIIQILCR-------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (591)
Q Consensus 287 ~~~~~vvG~~~~i~~l~~~L~~-------------~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld 353 (591)
-.++++.|.+++++.+.+.+.. ..+.+++|+||||||||++|+++|+.+ +..++.++
T Consensus 128 ~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~----------~~~~i~v~ 197 (389)
T PRK03992 128 VTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET----------NATFIRVV 197 (389)
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh----------CCCEEEee
Confidence 4677899999999998886532 235679999999999999999999987 45678888
Q ss_pred hhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccc---c----CCcEEE
Q 007723 354 MGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL---G----RGELQC 426 (591)
Q Consensus 354 ~~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~l---e----~g~v~l 426 (591)
.+.+.. .+.|+.+..++.+|..+....++||||||+|.+...+.... ..+..+++..+..++ . .+.+++
T Consensus 198 ~~~l~~--~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~--~~~~~~~~~~l~~lL~~ld~~~~~~~v~V 273 (389)
T PRK03992 198 GSELVQ--KFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSG--TSGDREVQRTLMQLLAEMDGFDPRGNVKI 273 (389)
T ss_pred hHHHhH--hhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCC--CCccHHHHHHHHHHHHhccccCCCCCEEE
Confidence 777763 46677788889999988877889999999999976543211 122334444333333 2 357899
Q ss_pred EecCChhHHHhhhcccHHHHc--cCc-ceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcH-HHHHHHHHHhHHhhhcCCC
Q 007723 427 IASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTL-EAINAAVHLSARYISDRYL 502 (591)
Q Consensus 427 I~att~~e~~~~~~~d~aL~~--Rf~-~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~-~al~~l~~~s~r~i~~~~l 502 (591)
|++||..+ .+|+++.+ ||+ .|.|+.|+.+++.+|++.+.... .+.+ ..+..++..+.+|.
T Consensus 274 I~aTn~~~-----~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~------~~~~~~~~~~la~~t~g~s----- 337 (389)
T PRK03992 274 IAATNRID-----ILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKM------NLADDVDLEELAELTEGAS----- 337 (389)
T ss_pred EEecCChh-----hCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccC------CCCCcCCHHHHHHHcCCCC-----
Confidence 99998853 57899987 997 59999999999999998665432 2322 23667777766553
Q ss_pred cHHHHHHHHHHhh
Q 007723 503 PDKAIDLVDEAGS 515 (591)
Q Consensus 503 p~~ai~lld~a~a 515 (591)
+...-.++.+|+.
T Consensus 338 gadl~~l~~eA~~ 350 (389)
T PRK03992 338 GADLKAICTEAGM 350 (389)
T ss_pred HHHHHHHHHHHHH
Confidence 3345566777764
No 79
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.74 E-value=5.2e-17 Score=173.09 Aligned_cols=200 Identities=20% Similarity=0.239 Sum_probs=142.1
Q ss_pred CCCCccCCcHHHHHHHHHHHHh-------------cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEee
Q 007723 287 ELIDPVIGRETEIQRIIQILCR-------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (591)
Q Consensus 287 ~~~~~vvG~~~~i~~l~~~L~~-------------~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld 353 (591)
-+|+++.|.+..++.+.+.+.- ..+.+++|+||||||||++|+++|..+ +..++.+.
T Consensus 142 v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l----------~~~fi~i~ 211 (398)
T PTZ00454 142 VTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT----------TATFIRVV 211 (398)
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc----------CCCEEEEe
Confidence 4688999999988888776531 235689999999999999999999976 45667776
Q ss_pred hhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccc-------cCCcEEE
Q 007723 354 MGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL-------GRGELQC 426 (591)
Q Consensus 354 ~~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~l-------e~g~v~l 426 (591)
.+.+. .++.|+.+..++.+|..+....++||||||+|.+...+.... .+.....+..+..++ ....+.+
T Consensus 212 ~s~l~--~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~--~~~d~~~~r~l~~LL~~ld~~~~~~~v~V 287 (398)
T PTZ00454 212 GSEFV--QKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQ--TGADREVQRILLELLNQMDGFDQTTNVKV 287 (398)
T ss_pred hHHHH--HHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhcccccccc--CCccHHHHHHHHHHHHHhhccCCCCCEEE
Confidence 66654 246677778899999988888899999999999976542211 112233333333322 2357889
Q ss_pred EecCChhHHHhhhcccHHHHc--cCc-ceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhhhcCCCc
Q 007723 427 IASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLP 503 (591)
Q Consensus 427 I~att~~e~~~~~~~d~aL~~--Rf~-~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i~~~~lp 503 (591)
|++|+.. ..+|+++.| ||+ .|.++.|+.+++..|++.+..+. ++.- +-.+..++..+.+| .+
T Consensus 288 I~aTN~~-----d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~----~l~~-dvd~~~la~~t~g~-----sg 352 (398)
T PTZ00454 288 IMATNRA-----DTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKM----NLSE-EVDLEDFVSRPEKI-----SA 352 (398)
T ss_pred EEecCCc-----hhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcC----CCCc-ccCHHHHHHHcCCC-----CH
Confidence 9999875 368899998 998 59999999999999998776543 3221 12356667666555 34
Q ss_pred HHHHHHHHHHhh
Q 007723 504 DKAIDLVDEAGS 515 (591)
Q Consensus 504 ~~ai~lld~a~a 515 (591)
.....++.+|+.
T Consensus 353 aDI~~l~~eA~~ 364 (398)
T PTZ00454 353 ADIAAICQEAGM 364 (398)
T ss_pred HHHHHHHHHHHH
Confidence 455566777764
No 80
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.74 E-value=4.1e-17 Score=174.97 Aligned_cols=204 Identities=23% Similarity=0.288 Sum_probs=144.1
Q ss_pred cccccCCCCccCCcHHHHHHHHHHHHh-------------cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCce
Q 007723 282 ARASEELIDPVIGRETEIQRIIQILCR-------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKR 348 (591)
Q Consensus 282 ~~~r~~~~~~vvG~~~~i~~l~~~L~~-------------~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~ 348 (591)
++..+.+|+++.|.+.+++.+.+.+.. ..+.+++|+||||||||++|+++|..+ +..
T Consensus 175 ~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el----------~~~ 244 (438)
T PTZ00361 175 DKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANET----------SAT 244 (438)
T ss_pred ccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhh----------CCC
Confidence 344557889999999999988886642 234678999999999999999999987 345
Q ss_pred EEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccc-------cC
Q 007723 349 IMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL-------GR 421 (591)
Q Consensus 349 ~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~l-------e~ 421 (591)
++.++.+.+.. ++.|+....++.+|..+....++||||||||.+...+.... .++..+++..+..++ ..
T Consensus 245 fi~V~~seL~~--k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~--sgg~~e~qr~ll~LL~~Ldg~~~~ 320 (438)
T PTZ00361 245 FLRVVGSELIQ--KYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDAT--SGGEKEIQRTMLELLNQLDGFDSR 320 (438)
T ss_pred EEEEecchhhh--hhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCC--CcccHHHHHHHHHHHHHHhhhccc
Confidence 66666666542 46677778889999888877889999999999976543211 123334443333332 24
Q ss_pred CcEEEEecCChhHHHhhhcccHHHHc--cCc-ceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHH-HHHHHHHHhHHhh
Q 007723 422 GELQCIASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLE-AINAAVHLSARYI 497 (591)
Q Consensus 422 g~v~lI~att~~e~~~~~~~d~aL~~--Rf~-~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~-al~~l~~~s~r~i 497 (591)
..+.+|++||..+ .+|+++.| ||+ .|.|+.|+.+++.+|++....++ .+.++ .+..++..+.+|.
T Consensus 321 ~~V~VI~ATNr~d-----~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~------~l~~dvdl~~la~~t~g~s 389 (438)
T PTZ00361 321 GDVKVIMATNRIE-----SLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKM------TLAEDVDLEEFIMAKDELS 389 (438)
T ss_pred CCeEEEEecCChH-----HhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcC------CCCcCcCHHHHHHhcCCCC
Confidence 5789999998753 57899986 897 59999999999999998765533 33333 2566666665553
Q ss_pred hcCCCcHHHHHHHHHHhh
Q 007723 498 SDRYLPDKAIDLVDEAGS 515 (591)
Q Consensus 498 ~~~~lp~~ai~lld~a~a 515 (591)
+...-.++.+|+.
T Consensus 390 -----gAdI~~i~~eA~~ 402 (438)
T PTZ00361 390 -----GADIKAICTEAGL 402 (438)
T ss_pred -----HHHHHHHHHHHHH
Confidence 2234455666654
No 81
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.73 E-value=6e-17 Score=178.83 Aligned_cols=204 Identities=21% Similarity=0.271 Sum_probs=142.9
Q ss_pred cCCCCccCCcHHHHHHHHHHHH------------hcCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEee
Q 007723 286 EELIDPVIGRETEIQRIIQILC------------RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (591)
Q Consensus 286 ~~~~~~vvG~~~~i~~l~~~L~------------~~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld 353 (591)
.-+|++++|.++..+.+.+++. .....++||+||||||||++|+++|... +.+++.++
T Consensus 51 ~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~----------~~~~~~i~ 120 (495)
T TIGR01241 51 KVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA----------GVPFFSIS 120 (495)
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc----------CCCeeecc
Confidence 4578999999987776665443 1234679999999999999999999876 55677777
Q ss_pred hhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCC-CCccHHHHHhhcccc----cCCcEEEEe
Q 007723 354 MGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGN-KGTGLDISNLLKPSL----GRGELQCIA 428 (591)
Q Consensus 354 ~~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~-~~~~~~~~n~L~~~l----e~g~v~lI~ 428 (591)
.+.+.. .+.|..+..++.+|..+....++||||||+|.+......+.++ ........+.|+..| ..+.+++|+
T Consensus 121 ~~~~~~--~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~ 198 (495)
T TIGR01241 121 GSDFVE--MFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIA 198 (495)
T ss_pred HHHHHH--HHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEE
Confidence 766552 2455667788999999888888999999999997654321110 011223445454444 345789999
Q ss_pred cCChhHHHhhhcccHHHHc--cCc-ceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhhhcCCCcHH
Q 007723 429 STTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDK 505 (591)
Q Consensus 429 att~~e~~~~~~~d~aL~~--Rf~-~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i~~~~lp~~ 505 (591)
+||..+ .+|++|.| ||+ .|.++.|+.+++.+|++...... .+. .+..+..++..+.+|- +..
T Consensus 199 aTn~~~-----~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~----~~~-~~~~l~~la~~t~G~s-----gad 263 (495)
T TIGR01241 199 ATNRPD-----VLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNK----KLA-PDVDLKAVARRTPGFS-----GAD 263 (495)
T ss_pred ecCChh-----hcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcC----CCC-cchhHHHHHHhCCCCC-----HHH
Confidence 998853 68899998 897 59999999999999998766532 221 2334666776665553 334
Q ss_pred HHHHHHHHhhH
Q 007723 506 AIDLVDEAGSR 516 (591)
Q Consensus 506 ai~lld~a~a~ 516 (591)
...++.+|+..
T Consensus 264 l~~l~~eA~~~ 274 (495)
T TIGR01241 264 LANLLNEAALL 274 (495)
T ss_pred HHHHHHHHHHH
Confidence 55667766543
No 82
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=1.1e-16 Score=177.01 Aligned_cols=202 Identities=24% Similarity=0.325 Sum_probs=151.4
Q ss_pred cCCCCccCCcHHHHHHHHHHHHh-------------cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEe
Q 007723 286 EELIDPVIGRETEIQRIIQILCR-------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSL 352 (591)
Q Consensus 286 ~~~~~~vvG~~~~i~~l~~~L~~-------------~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~l 352 (591)
.-.++++.|.+.+...+.+.+.. +....+||+||||||||++|+++|..+ +.+|+.+
T Consensus 238 ~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~----------~~~fi~v 307 (494)
T COG0464 238 DVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES----------RSRFISV 307 (494)
T ss_pred CcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC----------CCeEEEe
Confidence 34677788877766666554321 233578999999999999999999976 7889999
Q ss_pred ehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhccccc----CCcEEEEe
Q 007723 353 DMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG----RGELQCIA 428 (591)
Q Consensus 353 d~~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le----~g~v~lI~ 428 (591)
+.+.++ .++.|+.+..++.+|..+++..++||||||+|.+...+..+.. +....+.+.|+..+. ...+++|+
T Consensus 308 ~~~~l~--sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~--~~~~r~~~~lL~~~d~~e~~~~v~vi~ 383 (494)
T COG0464 308 KGSELL--SKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSED--GSGRRVVGQLLTELDGIEKAEGVLVIA 383 (494)
T ss_pred eCHHHh--ccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCc--hHHHHHHHHHHHHhcCCCccCceEEEe
Confidence 998776 4689999999999999999889999999999999877644211 222356666666553 35688999
Q ss_pred cCChhHHHhhhcccHHHHc--cCc-ceeecCCCHHHHHHHHHHHHHHHHhhcCCC-CcHHHHHHHHHHhHHhhhcCCCcH
Q 007723 429 STTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCK-FTLEAINAAVHLSARYISDRYLPD 504 (591)
Q Consensus 429 att~~e~~~~~~~d~aL~~--Rf~-~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~-i~~~al~~l~~~s~r~i~~~~lp~ 504 (591)
+||.. ..+|+++.| ||+ .+.++.|+.+++.+|++...... +.. ..+-.++.+++.+.+| ...
T Consensus 384 aTN~p-----~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~----~~~~~~~~~~~~l~~~t~~~-----sga 449 (494)
T COG0464 384 ATNRP-----DDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDK----KPPLAEDVDLEELAEITEGY-----SGA 449 (494)
T ss_pred cCCCc-----cccCHhhcccCccceEeecCCCCHHHHHHHHHHHhccc----CCcchhhhhHHHHHHHhcCC-----CHH
Confidence 99986 468999999 998 59999999999999998776643 222 3345577777766554 233
Q ss_pred HHHHHHHHHhh
Q 007723 505 KAIDLVDEAGS 515 (591)
Q Consensus 505 ~ai~lld~a~a 515 (591)
....++.+|+.
T Consensus 450 di~~i~~ea~~ 460 (494)
T COG0464 450 DIAALVREAAL 460 (494)
T ss_pred HHHHHHHHHHH
Confidence 45566666664
No 83
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.72 E-value=1.4e-16 Score=183.85 Aligned_cols=202 Identities=19% Similarity=0.276 Sum_probs=149.8
Q ss_pred cCCCCccCCcHHHHHHHHHHHHh-------------cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEe
Q 007723 286 EELIDPVIGRETEIQRIIQILCR-------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSL 352 (591)
Q Consensus 286 ~~~~~~vvG~~~~i~~l~~~L~~-------------~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~l 352 (591)
.-.|+++.|.+...+.|.+.+.. ..+.++||+||||||||++|+++|..+ +..++.+
T Consensus 449 ~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~----------~~~fi~v 518 (733)
T TIGR01243 449 NVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES----------GANFIAV 518 (733)
T ss_pred ccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc----------CCCEEEE
Confidence 34688999999988888776542 234578999999999999999999987 5678888
Q ss_pred ehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhccccc----CCcEEEEe
Q 007723 353 DMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG----RGELQCIA 428 (591)
Q Consensus 353 d~~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le----~g~v~lI~ 428 (591)
+.+.+.. ++.|+.+..++.+|..++...++||||||+|.|.+.+..+.. ......+.+.|+..|. ...+++|+
T Consensus 519 ~~~~l~~--~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~-~~~~~~~~~~lL~~ldg~~~~~~v~vI~ 595 (733)
T TIGR01243 519 RGPEILS--KWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFD-TSVTDRIVNQLLTEMDGIQELSNVVVIA 595 (733)
T ss_pred ehHHHhh--cccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCC-ccHHHHHHHHHHHHhhcccCCCCEEEEE
Confidence 8887763 578999999999999999889999999999999876533211 1223345565655553 46799999
Q ss_pred cCChhHHHhhhcccHHHHc--cCc-ceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHH-HHHHHHHHhHHhhhcCCCcH
Q 007723 429 STTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLE-AINAAVHLSARYISDRYLPD 504 (591)
Q Consensus 429 att~~e~~~~~~~d~aL~~--Rf~-~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~-al~~l~~~s~r~i~~~~lp~ 504 (591)
+||..+ .+|+++.| ||+ .|+++.|+.+++.+|++.... +..++++ .++.+++.+.+|-..
T Consensus 596 aTn~~~-----~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~------~~~~~~~~~l~~la~~t~g~sga----- 659 (733)
T TIGR01243 596 ATNRPD-----ILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTR------SMPLAEDVDLEELAEMTEGYTGA----- 659 (733)
T ss_pred eCCChh-----hCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhc------CCCCCccCCHHHHHHHcCCCCHH-----
Confidence 998864 58899998 998 599999999999999965433 3344333 377888887766322
Q ss_pred HHHHHHHHHhhH
Q 007723 505 KAIDLVDEAGSR 516 (591)
Q Consensus 505 ~ai~lld~a~a~ 516 (591)
..-.++.+|+..
T Consensus 660 di~~~~~~A~~~ 671 (733)
T TIGR01243 660 DIEAVCREAAMA 671 (733)
T ss_pred HHHHHHHHHHHH
Confidence 233455555543
No 84
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.72 E-value=1.4e-16 Score=158.97 Aligned_cols=181 Identities=12% Similarity=0.140 Sum_probs=128.6
Q ss_pred CCCccC-C-cHHHHHHHHHHHHhcCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhccccccc
Q 007723 288 LIDPVI-G-RETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERG 365 (591)
Q Consensus 288 ~~~~vv-G-~~~~i~~l~~~L~~~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~~~~g 365 (591)
+|++++ | +...+..+.++......++++|+||+|||||||++++++.+... +..+.++.+.....
T Consensus 20 ~fd~f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~-------~~~v~y~~~~~~~~------ 86 (235)
T PRK08084 20 TFASFYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQR-------GRAVGYVPLDKRAW------ 86 (235)
T ss_pred CccccccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhC-------CCeEEEEEHHHHhh------
Confidence 566666 4 45566666666666666789999999999999999999987542 45566666544221
Q ss_pred hHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCCcEEEEecCChhHHHhhhcccHHH
Q 007723 366 ELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKAL 445 (591)
Q Consensus 366 ~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g~v~lI~att~~e~~~~~~~d~aL 445 (591)
....+++.+.+ ..+|||||+|.+.+... ....+++.+...++.++..+|++++..+. ......+.|
T Consensus 87 ----~~~~~~~~~~~--~dlliiDdi~~~~~~~~-------~~~~lf~l~n~~~e~g~~~li~ts~~~p~-~l~~~~~~L 152 (235)
T PRK08084 87 ----FVPEVLEGMEQ--LSLVCIDNIECIAGDEL-------WEMAIFDLYNRILESGRTRLLITGDRPPR-QLNLGLPDL 152 (235)
T ss_pred ----hhHHHHHHhhh--CCEEEEeChhhhcCCHH-------HHHHHHHHHHHHHHcCCCeEEEeCCCChH-HcCcccHHH
Confidence 11222333322 24899999999954322 25567788888888777666666664432 222356999
Q ss_pred HccC---cceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhhhc
Q 007723 446 ARRF---QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499 (591)
Q Consensus 446 ~~Rf---~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i~~ 499 (591)
++|| ..+.+.+|+.+++.++|+..+.. +++.+++++++++++.+.+.++.
T Consensus 153 ~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~----~~~~l~~~v~~~L~~~~~~d~r~ 205 (235)
T PRK08084 153 ASRLDWGQIYKLQPLSDEEKLQALQLRARL----RGFELPEDVGRFLLKRLDREMRT 205 (235)
T ss_pred HHHHhCCceeeecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhhcCCHHH
Confidence 9999 57999999999999999765544 38999999999999999888765
No 85
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.72 E-value=7.3e-17 Score=175.37 Aligned_cols=183 Identities=20% Similarity=0.278 Sum_probs=131.7
Q ss_pred ccccccCCCCccCCcHHHHHHHHHHHHh-------------cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCc
Q 007723 281 TARASEELIDPVIGRETEIQRIIQILCR-------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSK 347 (591)
Q Consensus 281 ~~~~r~~~~~~vvG~~~~i~~l~~~L~~-------------~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~ 347 (591)
.+...+.+|+++.|.+.+++.+.+.+.. ..++++|||||||||||++++++|+.+...-.-......
T Consensus 173 ~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~ 252 (512)
T TIGR03689 173 LEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKS 252 (512)
T ss_pred eecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCce
Confidence 4555667899999999999998886532 235789999999999999999999988432110001122
Q ss_pred eEEEeehhhhhccccccchHHHHHHHHHHHHHh----cCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhccccc---
Q 007723 348 RIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG--- 420 (591)
Q Consensus 348 ~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~~----~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le--- 420 (591)
.++.+..+.++ .++.|+.+..++.+|+.+.. ..++||||||+|.++..+..+.+ .+....+.+.|+..|.
T Consensus 253 ~fl~v~~~eLl--~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s-~d~e~~il~~LL~~LDgl~ 329 (512)
T TIGR03689 253 YFLNIKGPELL--NKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVS-SDVETTVVPQLLSELDGVE 329 (512)
T ss_pred eEEeccchhhc--ccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCcc-chHHHHHHHHHHHHhcccc
Confidence 34444444444 35788889999999988765 25889999999999876543221 1112234455555553
Q ss_pred -CCcEEEEecCChhHHHhhhcccHHHHc--cCc-ceeecCCCHHHHHHHHHHHHH
Q 007723 421 -RGELQCIASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLRE 471 (591)
Q Consensus 421 -~g~v~lI~att~~e~~~~~~~d~aL~~--Rf~-~i~i~~p~~~e~~~iL~~~~~ 471 (591)
.+.+++|++||..+ .+|++|.| ||+ .|.|+.|+.+++.+|++.+..
T Consensus 330 ~~~~ViVI~ATN~~d-----~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~ 379 (512)
T TIGR03689 330 SLDNVIVIGASNRED-----MIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLT 379 (512)
T ss_pred cCCceEEEeccCChh-----hCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhh
Confidence 36789999999864 58999998 998 499999999999999987654
No 86
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.72 E-value=3e-16 Score=161.07 Aligned_cols=159 Identities=16% Similarity=0.135 Sum_probs=118.7
Q ss_pred cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhccccccchHHHHHHHHHHHHHh-----cCC
Q 007723 309 RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK-----SGD 383 (591)
Q Consensus 309 ~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~~-----~~~ 383 (591)
+.+..++|+||||||||.+|+++|..+ +..++.++.+++.. ++.|+.+..++.+|..+.. ..+
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~el----------g~~~i~vsa~eL~s--k~vGEsEk~IR~~F~~A~~~a~~~~aP 213 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKM----------GIEPIVMSAGELES--ENAGEPGKLIRQRYREAADIIKKKGKM 213 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHc----------CCCeEEEEHHHhhc--CcCCcHHHHHHHHHHHHHHHhhccCCC
Confidence 344567899999999999999999998 77889999999884 5899999999999998864 368
Q ss_pred eEEEEcCcchhhcCCCCCCCCCCccHHH-HHhhcccc----------------cCCcEEEEecCChhHHHhhhcccHHHH
Q 007723 384 VILFIDEVHTLIGSGTVGRGNKGTGLDI-SNLLKPSL----------------GRGELQCIASTTQDEHRTQFEKDKALA 446 (591)
Q Consensus 384 ~ILfIDEi~~L~~~~~~~~~~~~~~~~~-~n~L~~~l----------------e~g~v~lI~att~~e~~~~~~~d~aL~ 446 (591)
+||||||||.+++....+++ .....+ ...|+..+ ....+.+|+|||.. ..+|++|+
T Consensus 214 cVLFIDEIDA~~g~r~~~~~--tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrp-----d~LDpALl 286 (413)
T PLN00020 214 SCLFINDLDAGAGRFGTTQY--TVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDF-----STLYAPLI 286 (413)
T ss_pred eEEEEehhhhcCCCCCCCCc--chHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCc-----ccCCHhHc
Confidence 99999999999876532111 111112 23333322 13568889999875 36899999
Q ss_pred c--cCcceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHh
Q 007723 447 R--RFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLS 493 (591)
Q Consensus 447 ~--Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s 493 (591)
| ||+.+ +..|+.+++.+||+.+..+ ..++...+..+++..
T Consensus 287 RpGRfDk~-i~lPd~e~R~eIL~~~~r~------~~l~~~dv~~Lv~~f 328 (413)
T PLN00020 287 RDGRMEKF-YWAPTREDRIGVVHGIFRD------DGVSREDVVKLVDTF 328 (413)
T ss_pred CCCCCCce-eCCCCHHHHHHHHHHHhcc------CCCCHHHHHHHHHcC
Confidence 9 99974 4689999999999877664 355666666666543
No 87
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=8.3e-17 Score=163.46 Aligned_cols=182 Identities=22% Similarity=0.354 Sum_probs=142.4
Q ss_pred CCCccCCcHHHHHHHHHHHHh--------------cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEee
Q 007723 288 LIDPVIGRETEIQRIIQILCR--------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (591)
Q Consensus 288 ~~~~vvG~~~~i~~l~~~L~~--------------~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld 353 (591)
+|+++-|-+.++..+.+.+.- +...++||+||||||||.+|+++|++. +..++.+.
T Consensus 90 ~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akea----------ga~fInv~ 159 (386)
T KOG0737|consen 90 SFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEA----------GANFINVS 159 (386)
T ss_pred ehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHc----------CCCcceee
Confidence 678888888888887774321 234689999999999999999999987 77888888
Q ss_pred hhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcc-cc-------c--CCc
Q 007723 354 MGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKP-SL-------G--RGE 423 (591)
Q Consensus 354 ~~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~-~l-------e--~g~ 423 (591)
++.+.. ++.|+.++.++.+|..+.+-.+.|+||||++.+++.+..+ ..++...++. +| . +..
T Consensus 160 ~s~lt~--KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~------dHEa~a~mK~eFM~~WDGl~s~~~~r 231 (386)
T KOG0737|consen 160 VSNLTS--KWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRST------DHEATAMMKNEFMALWDGLSSKDSER 231 (386)
T ss_pred ccccch--hhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccc------hHHHHHHHHHHHHHHhccccCCCCce
Confidence 888874 7889999999999999998899999999999999877431 3344443332 11 2 235
Q ss_pred EEEEecCChhHHHhhhcccHHHHccCc-ceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHH-HHHHHHHhHHhhh
Q 007723 424 LQCIASTTQDEHRTQFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEA-INAAVHLSARYIS 498 (591)
Q Consensus 424 v~lI~att~~e~~~~~~~d~aL~~Rf~-~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~a-l~~l~~~s~r~i~ 498 (591)
|.|+||||.+ +.+|.++.||+- +++|+.|+.+++.+||+-++... ++++++ +..++..+.+|-.
T Consensus 232 VlVlgATNRP-----~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e------~~e~~vD~~~iA~~t~GySG 297 (386)
T KOG0737|consen 232 VLVLGATNRP-----FDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKE------KLEDDVDLDEIAQMTEGYSG 297 (386)
T ss_pred EEEEeCCCCC-----ccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhccc------ccCcccCHHHHHHhcCCCcH
Confidence 8888999985 689999999986 69999999999999999888755 222332 6788888877743
No 88
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=3e-16 Score=164.81 Aligned_cols=207 Identities=21% Similarity=0.259 Sum_probs=159.3
Q ss_pred cccccCCCCccCCcHHHHHHHHHHH------------HhcCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceE
Q 007723 282 ARASEELIDPVIGRETEIQRIIQIL------------CRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRI 349 (591)
Q Consensus 282 ~~~r~~~~~~vvG~~~~i~~l~~~L------------~~~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~ 349 (591)
...++-.++++.|.+...+.+.+++ .+....++||.||||+|||+|++++|.+. +..+
T Consensus 145 ~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~----------~atf 214 (428)
T KOG0740|consen 145 DTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATES----------GATF 214 (428)
T ss_pred ccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhh----------cceE
Confidence 3345667899999887666665542 12334678999999999999999999987 7788
Q ss_pred EEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccc-----cCCcE
Q 007723 350 MSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL-----GRGEL 424 (591)
Q Consensus 350 ~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~l-----e~g~v 424 (591)
+.+..+.+. .+|.|+.+..++.+|.-++...+.|+||||+|.++.++.. ..+.....-....|.+.. ...++
T Consensus 215 f~iSassLt--sK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~-~e~e~srr~ktefLiq~~~~~s~~~drv 291 (428)
T KOG0740|consen 215 FNISASSLT--SKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSD-NEHESSRRLKTEFLLQFDGKNSAPDDRV 291 (428)
T ss_pred eeccHHHhh--hhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCC-cccccchhhhhHHHhhhccccCCCCCeE
Confidence 888888887 5688999999999999998889999999999999987732 211121122233343333 24589
Q ss_pred EEEecCChhHHHhhhcccHHHHccCc-ceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhhhcCCCc
Q 007723 425 QCIASTTQDEHRTQFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLP 503 (591)
Q Consensus 425 ~lI~att~~e~~~~~~~d~aL~~Rf~-~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i~~~~lp 503 (591)
++|||||.+ +++|.+++|||+ +++|+.|+.+.+..++..++... +..+.+..+..+++.+.+|-..
T Consensus 292 lvigaTN~P-----~e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~----~~~l~~~d~~~l~~~Tegysgs---- 358 (428)
T KOG0740|consen 292 LVIGATNRP-----WELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQ----PNGLSDLDISLLAKVTEGYSGS---- 358 (428)
T ss_pred EEEecCCCc-----hHHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHhC----CCCccHHHHHHHHHHhcCcccc----
Confidence 999999985 589999999998 58999999999999997776654 6788889999999999998655
Q ss_pred HHHHHHHHHHhh
Q 007723 504 DKAIDLVDEAGS 515 (591)
Q Consensus 504 ~~ai~lld~a~a 515 (591)
...+++.+|+.
T Consensus 359 -di~~l~kea~~ 369 (428)
T KOG0740|consen 359 -DITALCKEAAM 369 (428)
T ss_pred -cHHHHHHHhhc
Confidence 34666666653
No 89
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=1.4e-16 Score=176.53 Aligned_cols=202 Identities=21% Similarity=0.264 Sum_probs=144.5
Q ss_pred CCCCccCCcHHHHHHHHH---HHHh---------cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeeh
Q 007723 287 ELIDPVIGRETEIQRIIQ---ILCR---------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (591)
Q Consensus 287 ~~~~~vvG~~~~i~~l~~---~L~~---------~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~ 354 (591)
-.|++|.|.++....|.+ .|.+ +-++++||+||||||||.||+++|.+. +.+|+.+..
T Consensus 308 V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA----------gVPF~svSG 377 (774)
T KOG0731|consen 308 VKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSVSG 377 (774)
T ss_pred CccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc----------CCceeeech
Confidence 479999999986655555 4443 235789999999999999999999877 677888888
Q ss_pred hhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCC---CCCCCCCccHHHHHhhccccc----CCcEEEE
Q 007723 355 GLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGT---VGRGNKGTGLDISNLLKPSLG----RGELQCI 427 (591)
Q Consensus 355 ~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~---~~~~~~~~~~~~~n~L~~~le----~g~v~lI 427 (591)
++++......| ..+++++|..++...++|+||||||.+...+. .+.++ .......|.|+..|. ...++++
T Consensus 378 SEFvE~~~g~~--asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~-~e~e~tlnQll~emDgf~~~~~vi~~ 454 (774)
T KOG0731|consen 378 SEFVEMFVGVG--ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQ-DEREQTLNQLLVEMDGFETSKGVIVL 454 (774)
T ss_pred HHHHHHhcccc--hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCC-hHHHHHHHHHHHHhcCCcCCCcEEEE
Confidence 88875433333 67899999999999999999999999976652 11111 123345567776664 4569999
Q ss_pred ecCChhHHHhhhcccHHHHc--cCc-ceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhhhcCCCcH
Q 007723 428 ASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPD 504 (591)
Q Consensus 428 ~att~~e~~~~~~~d~aL~~--Rf~-~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i~~~~lp~ 504 (591)
++||..+ .+|++|+| ||+ .|.+..|+...+.+|+.-.+... +...++..+..++.++..+ ..+
T Consensus 455 a~tnr~d-----~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~----~~~~e~~dl~~~a~~t~gf-----~ga 520 (774)
T KOG0731|consen 455 AATNRPD-----ILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKK----KLDDEDVDLSKLASLTPGF-----SGA 520 (774)
T ss_pred eccCCcc-----ccCHHhcCCCccccceeccCCchhhhHHHHHHHhhcc----CCCcchhhHHHHHhcCCCC-----cHH
Confidence 9999864 68999999 998 59999999999999997766643 3332333344455544433 223
Q ss_pred HHHHHHHHHhh
Q 007723 505 KAIDLVDEAGS 515 (591)
Q Consensus 505 ~ai~lld~a~a 515 (591)
....++.+|+.
T Consensus 521 dl~n~~neaa~ 531 (774)
T KOG0731|consen 521 DLANLCNEAAL 531 (774)
T ss_pred HHHhhhhHHHH
Confidence 44455555553
No 90
>CHL00176 ftsH cell division protein; Validated
Probab=99.69 E-value=6e-16 Score=173.46 Aligned_cols=203 Identities=21% Similarity=0.273 Sum_probs=139.2
Q ss_pred CCCCccCCcHHHHHHHHHHH---Hh---------cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeeh
Q 007723 287 ELIDPVIGRETEIQRIIQIL---CR---------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (591)
Q Consensus 287 ~~~~~vvG~~~~i~~l~~~L---~~---------~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~ 354 (591)
-+|++++|.++..+.+.+++ .. ..+.++||+||||||||++|+++|... +.+++.++.
T Consensus 180 ~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~----------~~p~i~is~ 249 (638)
T CHL00176 180 ITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA----------EVPFFSISG 249 (638)
T ss_pred CCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCeeeccH
Confidence 47899999998777766553 22 124579999999999999999999876 556777777
Q ss_pred hhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCC-CCccHHHHHhhcccc----cCCcEEEEec
Q 007723 355 GLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGN-KGTGLDISNLLKPSL----GRGELQCIAS 429 (591)
Q Consensus 355 ~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~-~~~~~~~~n~L~~~l----e~g~v~lI~a 429 (591)
+.+.. .+.|....+++.+|..+....++||||||+|.+...+..+.+. ........+.|+..+ .+..+++|++
T Consensus 250 s~f~~--~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaa 327 (638)
T CHL00176 250 SEFVE--MFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAA 327 (638)
T ss_pred HHHHH--HhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEe
Confidence 66542 2344455678889998888888999999999997553321110 011123344444444 3457899999
Q ss_pred CChhHHHhhhcccHHHHc--cCc-ceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhhhcCCCcHHH
Q 007723 430 TTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKA 506 (591)
Q Consensus 430 tt~~e~~~~~~~d~aL~~--Rf~-~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i~~~~lp~~a 506 (591)
||..+ .+|++|.| ||+ .|.+..|+.+++.+||+.++... . ..++..+..++..+.+|- +...
T Consensus 328 TN~~~-----~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~----~-~~~d~~l~~lA~~t~G~s-----gaDL 392 (638)
T CHL00176 328 TNRVD-----ILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNK----K-LSPDVSLELIARRTPGFS-----GADL 392 (638)
T ss_pred cCchH-----hhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhc----c-cchhHHHHHHHhcCCCCC-----HHHH
Confidence 98864 47899997 887 59999999999999998876642 1 223445666776655442 2344
Q ss_pred HHHHHHHhhH
Q 007723 507 IDLVDEAGSR 516 (591)
Q Consensus 507 i~lld~a~a~ 516 (591)
-.++.+|+..
T Consensus 393 ~~lvneAal~ 402 (638)
T CHL00176 393 ANLLNEAAIL 402 (638)
T ss_pred HHHHHHHHHH
Confidence 5566666543
No 91
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=2.9e-16 Score=169.39 Aligned_cols=188 Identities=21% Similarity=0.259 Sum_probs=149.9
Q ss_pred CCCCccCCcHHHHHHHHHHHHhc-------------CCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEee
Q 007723 287 ELIDPVIGRETEIQRIIQILCRR-------------TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (591)
Q Consensus 287 ~~~~~vvG~~~~i~~l~~~L~~~-------------~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld 353 (591)
-.++++-|..+..+.+.+++.-+ ...++|||||||||||.||.++|... +.+|+.+.
T Consensus 664 i~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~----------~~~fisvK 733 (952)
T KOG0735|consen 664 IRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNS----------NLRFISVK 733 (952)
T ss_pred CCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhC----------CeeEEEec
Confidence 35678888887777777766543 33689999999999999999999876 77889998
Q ss_pred hhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccC----CcEEEEec
Q 007723 354 MGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR----GELQCIAS 429 (591)
Q Consensus 354 ~~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~----g~v~lI~a 429 (591)
..+++ .+|.|..|+.++.+|..+..+.++|||+||+|.+.++++- .+.+-...+.|.|+..|.. ..+.+++|
T Consensus 734 GPElL--~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGh--DsTGVTDRVVNQlLTelDG~Egl~GV~i~aa 809 (952)
T KOG0735|consen 734 GPELL--SKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGH--DSTGVTDRVVNQLLTELDGAEGLDGVYILAA 809 (952)
T ss_pred CHHHH--HHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCC--CCCCchHHHHHHHHHhhccccccceEEEEEe
Confidence 88888 5689999999999999999999999999999999876533 2345567788999887752 35788888
Q ss_pred CChhHHHhhhcccHHHHc--cCcc-eeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhhh
Q 007723 430 TTQDEHRTQFEKDKALAR--RFQP-VLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498 (591)
Q Consensus 430 tt~~e~~~~~~~d~aL~~--Rf~~-i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i~ 498 (591)
|+.++ -+||+|.| |++. |.-+.|+..++.+||+.+...+... ++-.++.++..+.+|-.
T Consensus 810 TsRpd-----liDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~-----~~vdl~~~a~~T~g~tg 871 (952)
T KOG0735|consen 810 TSRPD-----LIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKD-----TDVDLECLAQKTDGFTG 871 (952)
T ss_pred cCCcc-----ccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCc-----cccchHHHhhhcCCCch
Confidence 88875 37899999 9985 8899999999999998887754211 23337788888777743
No 92
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.69 E-value=1.8e-15 Score=170.17 Aligned_cols=213 Identities=21% Similarity=0.236 Sum_probs=148.2
Q ss_pred chhcccccccCCCCccCCcHHHHHHHHHHHHhcCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhh
Q 007723 277 CVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGL 356 (591)
Q Consensus 277 ~~~l~~~~r~~~~~~vvG~~~~i~~l~~~L~~~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~ 356 (591)
..++.+.+||.+|++++|++..++.+...+......+++|+||||||||++|+.+++............+..++.++...
T Consensus 141 ~~~~~~~~rp~~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~ 220 (615)
T TIGR02903 141 HKSAQSLLRPRAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTT 220 (615)
T ss_pred hhHHhhhcCcCcHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechh
Confidence 46788889999999999999999999888876677789999999999999999998876432211111245566666543
Q ss_pred hhccc-----cccchH----HHHHHHHHHH----------HHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcc
Q 007723 357 LMAGA-----KERGEL----EARVTTLISE----------IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKP 417 (591)
Q Consensus 357 l~~g~-----~~~g~~----~~~i~~i~~~----------~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~ 417 (591)
+-... ...|.. ....+..+.. +....+++|||||++.| ....++.|+.
T Consensus 221 l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~L-------------d~~~Q~~Ll~ 287 (615)
T TIGR02903 221 LRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGEL-------------DPLLQNKLLK 287 (615)
T ss_pred ccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccC-------------CHHHHHHHHH
Confidence 31000 000100 0111111111 11345679999999999 5566666666
Q ss_pred cccCC------------------------------cEEEEecCChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHH
Q 007723 418 SLGRG------------------------------ELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILL 467 (591)
Q Consensus 418 ~le~g------------------------------~v~lI~att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~ 467 (591)
.++.+ .+++|++|+.+. ..++++|++||..+.+.+++.+++..|++
T Consensus 288 ~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~----~~l~~aLrSR~~~i~~~pls~edi~~Il~ 363 (615)
T TIGR02903 288 VLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDP----EEINPALRSRCAEVFFEPLTPEDIALIVL 363 (615)
T ss_pred HHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccc----cccCHHHHhceeEEEeCCCCHHHHHHHHH
Confidence 66432 367888887753 25679999999999999999999999998
Q ss_pred HHHHHHHhhcCCCCcHHHHHHHHHHhHHhhhcCCCcHHHHHHHHHHhhHh
Q 007723 468 GLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRA 517 (591)
Q Consensus 468 ~~~~~~~~~~~i~i~~~al~~l~~~s~r~i~~~~lp~~ai~lld~a~a~~ 517 (591)
..+.++ ++.+++++++.+..++.. ..++++.|..++..+
T Consensus 364 ~~a~~~----~v~ls~eal~~L~~ys~~-------gRraln~L~~~~~~~ 402 (615)
T TIGR02903 364 NAAEKI----NVHLAAGVEELIARYTIE-------GRKAVNILADVYGYA 402 (615)
T ss_pred HHHHHc----CCCCCHHHHHHHHHCCCc-------HHHHHHHHHHHHHHH
Confidence 877654 778999999999887641 146888887776443
No 93
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.69 E-value=9.8e-15 Score=170.47 Aligned_cols=182 Identities=20% Similarity=0.296 Sum_probs=125.2
Q ss_pred CccCCcHHHHHHHHHHHHhcC---------CCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhc-
Q 007723 290 DPVIGRETEIQRIIQILCRRT---------KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA- 359 (591)
Q Consensus 290 ~~vvG~~~~i~~l~~~L~~~~---------~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~- 359 (591)
..++||+..++.+...+.+.. ...++|+||+|||||++|++||..+... ...++.+|++.+..
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~-------~~~~i~~d~s~~~~~ 637 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD-------EDAMVRIDMSEYMEK 637 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC-------CCcEEEEechhhccc
Confidence 358999999999999887621 2347899999999999999999988543 34566777665421
Q ss_pred -------cc--cccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCCc-------
Q 007723 360 -------GA--KERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGE------- 423 (591)
Q Consensus 360 -------g~--~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g~------- 423 (591)
|. .+.|--+ -..+.+.+...+..|||||||+.+ ..++++.|+++++.|.
T Consensus 638 ~~~~~l~g~~~g~~g~~~--~g~l~~~v~~~p~~vlllDeieka-------------~~~v~~~Ll~~l~~g~l~d~~g~ 702 (852)
T TIGR03346 638 HSVARLIGAPPGYVGYEE--GGQLTEAVRRKPYSVVLFDEVEKA-------------HPDVFNVLLQVLDDGRLTDGQGR 702 (852)
T ss_pred chHHHhcCCCCCccCccc--ccHHHHHHHcCCCcEEEEeccccC-------------CHHHHHHHHHHHhcCceecCCCe
Confidence 11 1111100 112333344566789999999988 7889999999987552
Q ss_pred ------EEEEecCChhHH--Hh------------------hhcccHHHHccCc-ceeecCCCHHHHHHHHHHHHHHHH--
Q 007723 424 ------LQCIASTTQDEH--RT------------------QFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYE-- 474 (591)
Q Consensus 424 ------v~lI~att~~e~--~~------------------~~~~d~aL~~Rf~-~i~i~~p~~~e~~~iL~~~~~~~~-- 474 (591)
.++|++||...- .. .-...|.|..|++ ++.+.+++.++..+|+......+.
T Consensus 703 ~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~ 782 (852)
T TIGR03346 703 TVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKR 782 (852)
T ss_pred EEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHH
Confidence 358888876210 00 0113478889997 678888899999999887665432
Q ss_pred -hhc--CCCCcHHHHHHHHHHh
Q 007723 475 -AHH--NCKFTLEAINAAVHLS 493 (591)
Q Consensus 475 -~~~--~i~i~~~al~~l~~~s 493 (591)
... .+.+++++++++++..
T Consensus 783 l~~~~~~l~i~~~a~~~L~~~~ 804 (852)
T TIGR03346 783 LAERKITLELSDAALDFLAEAG 804 (852)
T ss_pred HHHCCCeecCCHHHHHHHHHhC
Confidence 222 4678999999999863
No 94
>PRK06893 DNA replication initiation factor; Validated
Probab=99.66 E-value=1.4e-15 Score=151.22 Aligned_cols=182 Identities=12% Similarity=0.161 Sum_probs=117.5
Q ss_pred cCCCCccCCcHHHH--HHHHHHHHhcCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhccccc
Q 007723 286 EELIDPVIGRETEI--QRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKE 363 (591)
Q Consensus 286 ~~~~~~vvG~~~~i--~~l~~~L~~~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~~~ 363 (591)
+.+|++++|+++.. ..+.+.......+.++|+||||||||||++++++.+... +..+.++++....
T Consensus 12 ~~~fd~f~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~-------~~~~~y~~~~~~~----- 79 (229)
T PRK06893 12 DETLDNFYADNNLLLLDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLN-------QRTAIYIPLSKSQ----- 79 (229)
T ss_pred cccccccccCChHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc-------CCCeEEeeHHHhh-----
Confidence 45789999766532 112222222223346899999999999999999988543 2334444443211
Q ss_pred cchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCCcEE-EEecCChhHHHhhhccc
Q 007723 364 RGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQ-CIASTTQDEHRTQFEKD 442 (591)
Q Consensus 364 ~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g~v~-lI~att~~e~~~~~~~d 442 (591)
.....+++.+. ...+|+|||+|.+.+...+ ...+.+.+....+.+..+ ++++++.+.. .-...
T Consensus 80 -----~~~~~~~~~~~--~~dlLilDDi~~~~~~~~~-------~~~l~~l~n~~~~~~~~illits~~~p~~--l~~~~ 143 (229)
T PRK06893 80 -----YFSPAVLENLE--QQDLVCLDDLQAVIGNEEW-------ELAIFDLFNRIKEQGKTLLLISADCSPHA--LSIKL 143 (229)
T ss_pred -----hhhHHHHhhcc--cCCEEEEeChhhhcCChHH-------HHHHHHHHHHHHHcCCcEEEEeCCCChHH--ccccc
Confidence 11122333332 3459999999998533221 334555565555555544 4545443321 11245
Q ss_pred HHHHccCc---ceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhhhc
Q 007723 443 KALARRFQ---PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499 (591)
Q Consensus 443 ~aL~~Rf~---~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i~~ 499 (591)
+.|.+||. .+.+.+|+.+++.++|+..+... ++.+++++++++++.+.+.++.
T Consensus 144 ~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~----~l~l~~~v~~~L~~~~~~d~r~ 199 (229)
T PRK06893 144 PDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQR----GIELSDEVANFLLKRLDRDMHT 199 (229)
T ss_pred hhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHc----CCCCCHHHHHHHHHhccCCHHH
Confidence 89999997 68999999999999998766543 8999999999999999887665
No 95
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.66 E-value=2.2e-15 Score=160.19 Aligned_cols=201 Identities=23% Similarity=0.283 Sum_probs=138.4
Q ss_pred cCCCCccCCcHHHHHHHHHHHHhc-------------CCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEe
Q 007723 286 EELIDPVIGRETEIQRIIQILCRR-------------TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSL 352 (591)
Q Consensus 286 ~~~~~~vvG~~~~i~~l~~~L~~~-------------~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~l 352 (591)
.-.++++.|.+++++.+.+.+..+ .+.+++|+||||||||++|++++..+ +..++.+
T Consensus 118 ~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l----------~~~~~~v 187 (364)
T TIGR01242 118 NVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET----------NATFIRV 187 (364)
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC----------CCCEEec
Confidence 346789999999999998876431 24568999999999999999999977 3445666
Q ss_pred ehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccc---c----CCcEE
Q 007723 353 DMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL---G----RGELQ 425 (591)
Q Consensus 353 d~~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~l---e----~g~v~ 425 (591)
....+. ..+.|+....++.++..+....++||||||+|.+........ .++..+.+..+...+ . .+.+.
T Consensus 188 ~~~~l~--~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~--~~~~~~~~~~l~~ll~~ld~~~~~~~v~ 263 (364)
T TIGR01242 188 VGSELV--RKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSG--TSGDREVQRTLMQLLAELDGFDPRGNVK 263 (364)
T ss_pred chHHHH--HHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCC--CCccHHHHHHHHHHHHHhhCCCCCCCEE
Confidence 555544 235566677788888887777788999999999965432211 112233333333322 2 45789
Q ss_pred EEecCChhHHHhhhcccHHHHc--cCc-ceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcH-HHHHHHHHHhHHhhhcCC
Q 007723 426 CIASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTL-EAINAAVHLSARYISDRY 501 (591)
Q Consensus 426 lI~att~~e~~~~~~~d~aL~~--Rf~-~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~-~al~~l~~~s~r~i~~~~ 501 (591)
+|++||..+ .+|+++.+ ||+ .|.|+.|+.+++.+|++...... .+.+ -.+..++..+.+|.
T Consensus 264 vI~ttn~~~-----~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~------~l~~~~~~~~la~~t~g~s---- 328 (364)
T TIGR01242 264 VIAATNRPD-----ILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKM------KLAEDVDLEAIAKMTEGAS---- 328 (364)
T ss_pred EEEecCChh-----hCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcC------CCCccCCHHHHHHHcCCCC----
Confidence 999998753 57899987 887 58999999999999997665432 2322 23667777776553
Q ss_pred CcHHHHHHHHHHhhH
Q 007723 502 LPDKAIDLVDEAGSR 516 (591)
Q Consensus 502 lp~~ai~lld~a~a~ 516 (591)
+.....++.+|+..
T Consensus 329 -g~dl~~l~~~A~~~ 342 (364)
T TIGR01242 329 -GADLKAICTEAGMF 342 (364)
T ss_pred -HHHHHHHHHHHHHH
Confidence 23445566666643
No 96
>PRK05642 DNA replication initiation factor; Validated
Probab=99.65 E-value=3.4e-15 Score=148.88 Aligned_cols=166 Identities=17% Similarity=0.211 Sum_probs=119.8
Q ss_pred CCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCc
Q 007723 312 NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEV 391 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi 391 (591)
++++|+||+|+|||||++++++.+... +.++++++...+... ...+++.+... -+|+|||+
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~-------~~~v~y~~~~~~~~~----------~~~~~~~~~~~--d~LiiDDi 106 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQR-------GEPAVYLPLAELLDR----------GPELLDNLEQY--ELVCLDDL 106 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhC-------CCcEEEeeHHHHHhh----------hHHHHHhhhhC--CEEEEech
Confidence 567899999999999999999987532 456777887766521 12233333333 38999999
Q ss_pred chhhcCCCCCCCCCCccHHHHHhhcccccCCcEEEEecCChhHHHhhhcccHHHHccC---cceeecCCCHHHHHHHHHH
Q 007723 392 HTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRF---QPVLISEPSQEDAVRILLG 468 (591)
Q Consensus 392 ~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g~v~lI~att~~e~~~~~~~d~aL~~Rf---~~i~i~~p~~~e~~~iL~~ 468 (591)
+.+.+...+ ...+.+++....+++..++|++++.+.. .....+.|.+|| ..+.+.+|+.+++..+++.
T Consensus 107 ~~~~~~~~~-------~~~Lf~l~n~~~~~g~~ilits~~~p~~--l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ 177 (234)
T PRK05642 107 DVIAGKADW-------EEALFHLFNRLRDSGRRLLLAASKSPRE--LPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQL 177 (234)
T ss_pred hhhcCChHH-------HHHHHHHHHHHHhcCCEEEEeCCCCHHH--cCccCccHHHHHhcCeeeecCCCCHHHHHHHHHH
Confidence 988443222 4556777766667788888888776542 223469999999 4688999999999999986
Q ss_pred HHHHHHhhcCCCCcHHHHHHHHHHhHHhhhcCCCcHHHHHHHHH
Q 007723 469 LREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDE 512 (591)
Q Consensus 469 ~~~~~~~~~~i~i~~~al~~l~~~s~r~i~~~~lp~~ai~lld~ 512 (591)
.+.. .++.+++++++++++.+.+.++. -..+++.||.
T Consensus 178 ka~~----~~~~l~~ev~~~L~~~~~~d~r~---l~~~l~~l~~ 214 (234)
T PRK05642 178 RASR----RGLHLTDEVGHFILTRGTRSMSA---LFDLLERLDQ 214 (234)
T ss_pred HHHH----cCCCCCHHHHHHHHHhcCCCHHH---HHHHHHHHHH
Confidence 4433 37999999999999999888765 3345666664
No 97
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.64 E-value=2.3e-15 Score=160.17 Aligned_cols=175 Identities=14% Similarity=0.145 Sum_probs=124.5
Q ss_pred CCCccCCcHHHHHHHHHHHHhcC----------CCCCeEecCCCCcHHHHHHHHHHHHHhCCCC-cccc-----------
Q 007723 288 LIDPVIGRETEIQRIIQILCRRT----------KNNPILLGESGVGKTAIAEGLAIRIVQAEVP-VFLL----------- 345 (591)
Q Consensus 288 ~~~~vvG~~~~i~~l~~~L~~~~----------~~~ilL~GppGvGKT~la~~lA~~l~~~~~p-~~~~----------- 345 (591)
.|++|+||+..++.|...+.... .+.+||+||+|+|||++|+.+|+.+.+.... ....
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~ 82 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAG 82 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcC
Confidence 47899999999999999998754 3558899999999999999999998764311 0000
Q ss_pred -CceEEEeehhhhhccccccchHHHHHHHHHHHHHh----cCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhccccc
Q 007723 346 -SKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG 420 (591)
Q Consensus 346 -~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~~----~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le 420 (591)
...+..+.... . .. ..+.++.+++.+.. .+..|+||||+|.| +...+|.|+..|+
T Consensus 83 ~hpD~~~i~~~~----~-~i--~i~~iR~l~~~~~~~p~~~~~kViiIDead~m-------------~~~aanaLLk~LE 142 (394)
T PRK07940 83 THPDVRVVAPEG----L-SI--GVDEVRELVTIAARRPSTGRWRIVVIEDADRL-------------TERAANALLKAVE 142 (394)
T ss_pred CCCCEEEecccc----c-cC--CHHHHHHHHHHHHhCcccCCcEEEEEechhhc-------------CHHHHHHHHHHhh
Confidence 11122222111 0 01 12236666666543 45679999999999 6677899999998
Q ss_pred C---CcEEEEecCChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhh
Q 007723 421 R---GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497 (591)
Q Consensus 421 ~---g~v~lI~att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i 497 (591)
+ +.+++++|+++. .+.++++|||+.+.|.+|+.++..+.|.. ...++++.+..++.++.+++
T Consensus 143 ep~~~~~fIL~a~~~~------~llpTIrSRc~~i~f~~~~~~~i~~~L~~---------~~~~~~~~a~~la~~s~G~~ 207 (394)
T PRK07940 143 EPPPRTVWLLCAPSPE------DVLPTIRSRCRHVALRTPSVEAVAEVLVR---------RDGVDPETARRAARASQGHI 207 (394)
T ss_pred cCCCCCeEEEEECChH------HChHHHHhhCeEEECCCCCHHHHHHHHHH---------hcCCCHHHHHHHHHHcCCCH
Confidence 6 556666666653 46799999999999999999998877752 12367788888888887654
No 98
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=3.1e-15 Score=143.91 Aligned_cols=181 Identities=20% Similarity=0.286 Sum_probs=134.3
Q ss_pred ccccccCCCCccCCcHHHHHHHHHHHHh-------------cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCc
Q 007723 281 TARASEELIDPVIGRETEIQRIIQILCR-------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSK 347 (591)
Q Consensus 281 ~~~~r~~~~~~vvG~~~~i~~l~~~L~~-------------~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~ 347 (591)
.++....+.+-+-|.+..|+.+.+.+.- ..+.+++||||||+|||.||+++|+.. .|
T Consensus 138 VeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht----------~c 207 (404)
T KOG0728|consen 138 VEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT----------DC 207 (404)
T ss_pred hhhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc----------ce
Confidence 3444333444444667777777665443 345789999999999999999999876 78
Q ss_pred eEEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccc-------c
Q 007723 348 RIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL-------G 420 (591)
Q Consensus 348 ~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~l-------e 420 (591)
.|+.+..++++. +|.|+-...++.+|--+++..+.|+|+||||.+-..+.. +++++..+++..++.++ .
T Consensus 208 ~firvsgselvq--k~igegsrmvrelfvmarehapsiifmdeidsigs~r~e--~~~ggdsevqrtmlellnqldgfea 283 (404)
T KOG0728|consen 208 TFIRVSGSELVQ--KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVE--SGSGGDSEVQRTMLELLNQLDGFEA 283 (404)
T ss_pred EEEEechHHHHH--HHhhhhHHHHHHHHHHHHhcCCceEeeeccccccccccc--CCCCccHHHHHHHHHHHHhcccccc
Confidence 899998888873 578888888999999888889999999999998544322 22344555555444443 3
Q ss_pred CCcEEEEecCChhHHHhhhcccHHHHc--cCc-ceeecCCCHHHHHHHHHHHHHHHHhhcCCC
Q 007723 421 RGELQCIASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCK 480 (591)
Q Consensus 421 ~g~v~lI~att~~e~~~~~~~d~aL~~--Rf~-~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~ 480 (591)
..++.+|.+||.-+ -+|++|.| |++ .|+|++|+.+.+.+||+-..++.-...++.
T Consensus 284 tknikvimatnrid-----ild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~ 341 (404)
T KOG0728|consen 284 TKNIKVIMATNRID-----ILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGIN 341 (404)
T ss_pred ccceEEEEeccccc-----cccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccC
Confidence 56799999999853 57899998 887 599999999999999987766653333443
No 99
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=1.2e-15 Score=149.50 Aligned_cols=171 Identities=26% Similarity=0.338 Sum_probs=131.6
Q ss_pred cccccCCCCccCCcHHHHHHHHHHHHh-------------cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCce
Q 007723 282 ARASEELIDPVIGRETEIQRIIQILCR-------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKR 348 (591)
Q Consensus 282 ~~~r~~~~~~vvG~~~~i~~l~~~L~~-------------~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~ 348 (591)
+++...++.++=|.+..|..+.+.+.- ..+.+++|||+||||||.||+++|+.- ...
T Consensus 177 eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqT----------SAT 246 (440)
T KOG0726|consen 177 EKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQT----------SAT 246 (440)
T ss_pred ccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhccc----------chh
Confidence 445556788899999999988886542 244689999999999999999999854 344
Q ss_pred EEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccc-------cC
Q 007723 349 IMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL-------GR 421 (591)
Q Consensus 349 ~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~l-------e~ 421 (591)
|+.+-.++++. +|.|+-...++.+|.-+....+.|+|||||+.+-.++. ++++++..+++..++.+| .+
T Consensus 247 FlRvvGseLiQ--kylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRy--ds~SggerEiQrtmLELLNQldGFdsr 322 (440)
T KOG0726|consen 247 FLRVVGSELIQ--KYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRY--DSNSGGEREIQRTMLELLNQLDGFDSR 322 (440)
T ss_pred hhhhhhHHHHH--HHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccc--cCCCccHHHHHHHHHHHHHhccCcccc
Confidence 55555566663 46777778899999999888999999999999844433 234566777776666555 37
Q ss_pred CcEEEEecCChhHHHhhhcccHHHHc--cCc-ceeecCCCHHHHHHHHHHHHH
Q 007723 422 GELQCIASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLRE 471 (591)
Q Consensus 422 g~v~lI~att~~e~~~~~~~d~aL~~--Rf~-~i~i~~p~~~e~~~iL~~~~~ 471 (591)
+.+.+|.|||.-+ .+||+|.| |++ .|.|+.|+......|+.-...
T Consensus 323 gDvKvimATnrie-----~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs 370 (440)
T KOG0726|consen 323 GDVKVIMATNRIE-----TLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTS 370 (440)
T ss_pred CCeEEEEeccccc-----ccCHhhcCCCccccccccCCCchhhhceeEEEeec
Confidence 8999999999854 68999998 887 599999999998888754433
No 100
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.62 E-value=1e-14 Score=168.45 Aligned_cols=188 Identities=22% Similarity=0.346 Sum_probs=141.3
Q ss_pred cCCCCccCCcHHHHHHHHHHHHh-------------cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEe
Q 007723 286 EELIDPVIGRETEIQRIIQILCR-------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSL 352 (591)
Q Consensus 286 ~~~~~~vvG~~~~i~~l~~~L~~-------------~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~l 352 (591)
.-+|+++.|.+++++.+.+++.. ....+++|+||||||||++++++|+.+ +..++.+
T Consensus 174 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~----------~~~~i~i 243 (733)
T TIGR01243 174 KVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA----------GAYFISI 243 (733)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh----------CCeEEEE
Confidence 45788999999999998887542 234679999999999999999999987 5567888
Q ss_pred ehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccc----cCCcEEEEe
Q 007723 353 DMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL----GRGELQCIA 428 (591)
Q Consensus 353 d~~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~l----e~g~v~lI~ 428 (591)
+...+.. ++.|+.+..++.+|+.+....+.||||||+|.+...+....+ +....+.+.|+..+ .++.+++|+
T Consensus 244 ~~~~i~~--~~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~--~~~~~~~~~Ll~~ld~l~~~~~vivI~ 319 (733)
T TIGR01243 244 NGPEIMS--KYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTG--EVEKRVVAQLLTLMDGLKGRGRVIVIG 319 (733)
T ss_pred ecHHHhc--ccccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcc--hHHHHHHHHHHHHhhccccCCCEEEEe
Confidence 8777663 467888889999999988888899999999999766432111 11234555565555 357789999
Q ss_pred cCChhHHHhhhcccHHHHc--cCc-ceeecCCCHHHHHHHHHHHHHHHHhhcCCCCc-HHHHHHHHHHhHHhhh
Q 007723 429 STTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFT-LEAINAAVHLSARYIS 498 (591)
Q Consensus 429 att~~e~~~~~~~d~aL~~--Rf~-~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~-~~al~~l~~~s~r~i~ 498 (591)
+||..+ .+|+++.+ ||. .+.+..|+.+++.+||+.... ++.+. +..++.+++.+.+|..
T Consensus 320 atn~~~-----~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~------~~~l~~d~~l~~la~~t~G~~g 382 (733)
T TIGR01243 320 ATNRPD-----ALDPALRRPGRFDREIVIRVPDKRARKEILKVHTR------NMPLAEDVDLDKLAEVTHGFVG 382 (733)
T ss_pred ecCChh-----hcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhc------CCCCccccCHHHHHHhCCCCCH
Confidence 998753 57899987 887 599999999999999974433 33443 3347778888777643
No 101
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=4.4e-15 Score=162.16 Aligned_cols=200 Identities=22% Similarity=0.287 Sum_probs=139.2
Q ss_pred CCCCccCCcHHHHHHHHHH---HHhc---------CCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeeh
Q 007723 287 ELIDPVIGRETEIQRIIQI---LCRR---------TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (591)
Q Consensus 287 ~~~~~vvG~~~~i~~l~~~---L~~~---------~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~ 354 (591)
-+|.++.|.+++.+.+.++ |..+ -+.+++|+||||||||.||+++|.+. +.+++.+..
T Consensus 147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA----------~VPFf~iSG 216 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA----------GVPFFSISG 216 (596)
T ss_pred cChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhccc----------CCCceeccc
Confidence 4789999999877766654 4432 24689999999999999999999866 445556655
Q ss_pred hhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCC--CCCccHHHHHhhccccc----CCcEEEEe
Q 007723 355 GLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRG--NKGTGLDISNLLKPSLG----RGELQCIA 428 (591)
Q Consensus 355 ~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~--~~~~~~~~~n~L~~~le----~g~v~lI~ 428 (591)
++++ ..+.|--..+++++|.++++..++|+||||+|.+-..+..+.+ |++ .....|.|+..|+ +..+++|+
T Consensus 217 S~FV--emfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~Gggnde-rEQTLNQlLvEmDGF~~~~gvivia 293 (596)
T COG0465 217 SDFV--EMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDE-REQTLNQLLVEMDGFGGNEGVIVIA 293 (596)
T ss_pred hhhh--hhhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchH-HHHHHHHHHhhhccCCCCCceEEEe
Confidence 5554 2234444567999999999988999999999999666544322 111 1234566666664 23689999
Q ss_pred cCChhHHHhhhcccHHHHc--cCc-ceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHH-HHHHHHHhHHhhhcCCCcH
Q 007723 429 STTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEA-INAAVHLSARYISDRYLPD 504 (591)
Q Consensus 429 att~~e~~~~~~~d~aL~~--Rf~-~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~a-l~~l~~~s~r~i~~~~lp~ 504 (591)
+||.++ -+|++|.| ||+ .|.++.|+...+.+||+-+... ..+++++ +..+++.+.++...
T Consensus 294 aTNRpd-----VlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~------~~l~~~Vdl~~iAr~tpGfsGA----- 357 (596)
T COG0465 294 ATNRPD-----VLDPALLRPGRFDRQILVELPDIKGREQILKVHAKN------KPLAEDVDLKKIARGTPGFSGA----- 357 (596)
T ss_pred cCCCcc-----cchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhc------CCCCCcCCHHHHhhhCCCcccc-----
Confidence 999875 47899998 998 5999999999999999865543 3333222 33466665555433
Q ss_pred HHHHHHHHHhh
Q 007723 505 KAIDLVDEAGS 515 (591)
Q Consensus 505 ~ai~lld~a~a 515 (591)
.-..++.+|+.
T Consensus 358 dL~nl~NEAal 368 (596)
T COG0465 358 DLANLLNEAAL 368 (596)
T ss_pred hHhhhHHHHHH
Confidence 23455655543
No 102
>PRK08727 hypothetical protein; Validated
Probab=99.61 E-value=3.9e-14 Score=141.19 Aligned_cols=188 Identities=14% Similarity=0.182 Sum_probs=121.5
Q ss_pred CCCccCCcH-HHHHHHHHHHHhcCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhccccccch
Q 007723 288 LIDPVIGRE-TEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGE 366 (591)
Q Consensus 288 ~~~~vvG~~-~~i~~l~~~L~~~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~~~~g~ 366 (591)
+|+++++.. ..+..+.........+.++|+||+|||||||++++++.+.+. +.++.++++..+.
T Consensus 17 ~f~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~-------~~~~~y~~~~~~~-------- 81 (233)
T PRK08727 17 RFDSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQA-------GRSSAYLPLQAAA-------- 81 (233)
T ss_pred ChhhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc-------CCcEEEEeHHHhh--------
Confidence 677776544 344444444333344568999999999999999999987653 3445555544322
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCCcEEEEecCChhHHHhhhcccHHHH
Q 007723 367 LEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALA 446 (591)
Q Consensus 367 ~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g~v~lI~att~~e~~~~~~~d~aL~ 446 (591)
..+...++.+. ...+|+|||+|.+.+.... ...+++.+....+++ ..+|.+++..+. .....++.|.
T Consensus 82 --~~~~~~~~~l~--~~dlLiIDDi~~l~~~~~~-------~~~lf~l~n~~~~~~-~~vI~ts~~~p~-~l~~~~~dL~ 148 (233)
T PRK08727 82 --GRLRDALEALE--GRSLVALDGLESIAGQRED-------EVALFDFHNRARAAG-ITLLYTARQMPD-GLALVLPDLR 148 (233)
T ss_pred --hhHHHHHHHHh--cCCEEEEeCcccccCChHH-------HHHHHHHHHHHHHcC-CeEEEECCCChh-hhhhhhHHHH
Confidence 22334444443 2349999999998543211 334444443433344 334444443221 1234579999
Q ss_pred ccC---cceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhhhcCCCcHHHHHHHHHH
Q 007723 447 RRF---QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEA 513 (591)
Q Consensus 447 ~Rf---~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i~~~~lp~~ai~lld~a 513 (591)
+|| ..+.+++|+.+++.++|+..+... ++.+++++++++++.+.|.++. ++++|+..
T Consensus 149 SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~----~l~l~~e~~~~La~~~~rd~r~------~l~~L~~l 208 (233)
T PRK08727 149 SRLAQCIRIGLPVLDDVARAAVLRERAQRR----GLALDEAAIDWLLTHGERELAG------LVALLDRL 208 (233)
T ss_pred HHHhcCceEEecCCCHHHHHHHHHHHHHHc----CCCCCHHHHHHHHHhCCCCHHH------HHHHHHHH
Confidence 995 468999999999999998766553 8999999999999999877654 65555543
No 103
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.60 E-value=5.6e-15 Score=145.73 Aligned_cols=188 Identities=20% Similarity=0.267 Sum_probs=117.5
Q ss_pred CCCccC-CcHH--HHHHHHHHHHhcCC--CCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhcccc
Q 007723 288 LIDPVI-GRET--EIQRIIQILCRRTK--NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAK 362 (591)
Q Consensus 288 ~~~~vv-G~~~--~i~~l~~~L~~~~~--~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~~ 362 (591)
+|+.+| |... ....+..+...... +.++|+||+|+|||+|++++++.+.... .+.++++++...+.....
T Consensus 6 tFdnfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~-----~~~~v~y~~~~~f~~~~~ 80 (219)
T PF00308_consen 6 TFDNFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQH-----PGKRVVYLSAEEFIREFA 80 (219)
T ss_dssp SCCCS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHC-----TTS-EEEEEHHHHHHHHH
T ss_pred ccccCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhcc-----ccccceeecHHHHHHHHH
Confidence 688875 6422 33344444333222 4578999999999999999999885421 267788888766542110
Q ss_pred ---ccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCCcEEEEecCChhHHHhhh
Q 007723 363 ---ERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQF 439 (591)
Q Consensus 363 ---~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g~v~lI~att~~e~~~~~ 439 (591)
..+. +..+.+.+. .-.+|+|||+|.+.++..+ ...+.+++....+++..++|.+...+. ...
T Consensus 81 ~~~~~~~----~~~~~~~~~--~~DlL~iDDi~~l~~~~~~-------q~~lf~l~n~~~~~~k~li~ts~~~P~--~l~ 145 (219)
T PF00308_consen 81 DALRDGE----IEEFKDRLR--SADLLIIDDIQFLAGKQRT-------QEELFHLFNRLIESGKQLILTSDRPPS--ELS 145 (219)
T ss_dssp HHHHTTS----HHHHHHHHC--TSSEEEEETGGGGTTHHHH-------HHHHHHHHHHHHHTTSEEEEEESS-TT--TTT
T ss_pred HHHHccc----chhhhhhhh--cCCEEEEecchhhcCchHH-------HHHHHHHHHHHHhhCCeEEEEeCCCCc--ccc
Confidence 0111 222333332 3459999999999433222 455666666666777766665544332 233
Q ss_pred cccHHHHccCc---ceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhhhc
Q 007723 440 EKDKALARRFQ---PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499 (591)
Q Consensus 440 ~~d~aL~~Rf~---~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i~~ 499 (591)
.+++.|.+||. .+.+.+|+.+++.+||+..+.. .++.+++++++++++...+.++.
T Consensus 146 ~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~----~~~~l~~~v~~~l~~~~~~~~r~ 204 (219)
T PF00308_consen 146 GLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKE----RGIELPEEVIEYLARRFRRDVRE 204 (219)
T ss_dssp TS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHH----TT--S-HHHHHHHHHHTTSSHHH
T ss_pred ccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHH----hCCCCcHHHHHHHHHhhcCCHHH
Confidence 46799999996 5999999999999999877765 49999999999999998777655
No 104
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.59 E-value=1.5e-14 Score=141.38 Aligned_cols=203 Identities=16% Similarity=0.203 Sum_probs=153.3
Q ss_pred cccccccCCCCccCCcHHHHHHHHHHHHhcCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceE--------EE
Q 007723 280 LTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRI--------MS 351 (591)
Q Consensus 280 l~~~~r~~~~~~vvG~~~~i~~l~~~L~~~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~--------~~ 351 (591)
|.++|||+.|+.++++++.-..+.........+|+++|||+|.||-|.+.++.+.+...+++..-...+- ++
T Consensus 3 Wvdkyrpksl~~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklE 82 (351)
T KOG2035|consen 3 WVDKYRPKSLDELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLE 82 (351)
T ss_pred chhhcCcchhhhcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEE
Confidence 6789999999999999998888888877677899999999999999999999999977555422111111 11
Q ss_pred e---------ehhhhhccccccchHHHHHHHHHHHHHh---------cCCeEEEEcCcchhhcCCCCCCCCCCccHHHHH
Q 007723 352 L---------DMGLLMAGAKERGELEARVTTLISEIQK---------SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISN 413 (591)
Q Consensus 352 l---------d~~~l~~g~~~~g~~~~~i~~i~~~~~~---------~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n 413 (591)
+ .+.---+|..++- .+.++++++.+ ....+++|-|+|.| ..|+|.
T Consensus 83 istvsS~yHlEitPSDaG~~DRv----ViQellKevAQt~qie~~~qr~fKvvvi~ead~L-------------T~dAQ~ 145 (351)
T KOG2035|consen 83 ISTVSSNYHLEITPSDAGNYDRV----VIQELLKEVAQTQQIETQGQRPFKVVVINEADEL-------------TRDAQH 145 (351)
T ss_pred EEEecccceEEeChhhcCcccHH----HHHHHHHHHHhhcchhhccccceEEEEEechHhh-------------hHHHHH
Confidence 1 1111112322222 24455555433 23579999999999 889999
Q ss_pred hhccccc--CCcEEEEecCChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHH
Q 007723 414 LLKPSLG--RGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVH 491 (591)
Q Consensus 414 ~L~~~le--~g~v~lI~att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~ 491 (591)
+|+..|+ .+.+++|..+|.- -.+-+++++||-.|+++.|+.+++..+|..++.+. ++.+..+.+..+++
T Consensus 146 aLRRTMEkYs~~~RlIl~cns~-----SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE----~l~lp~~~l~rIa~ 216 (351)
T KOG2035|consen 146 ALRRTMEKYSSNCRLILVCNST-----SRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKE----GLQLPKELLKRIAE 216 (351)
T ss_pred HHHHHHHHHhcCceEEEEecCc-----ccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHh----cccCcHHHHHHHHH
Confidence 9999998 4677777777663 24558999999999999999999999999888877 99999999999999
Q ss_pred HhHHhhhcCCCcHHHHHHHHHHh
Q 007723 492 LSARYISDRYLPDKAIDLVDEAG 514 (591)
Q Consensus 492 ~s~r~i~~~~lp~~ai~lld~a~ 514 (591)
.|.|.++. |+=+++.++
T Consensus 217 kS~~nLRr------AllmlE~~~ 233 (351)
T KOG2035|consen 217 KSNRNLRR------ALLMLEAVR 233 (351)
T ss_pred HhcccHHH------HHHHHHHHH
Confidence 99988764 665554443
No 105
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.59 E-value=1.1e-14 Score=172.39 Aligned_cols=180 Identities=16% Similarity=0.133 Sum_probs=123.4
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhccc-----------------------------
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGA----------------------------- 361 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~----------------------------- 361 (591)
..++||+||||||||.||+++|... +.+++.+.++.++.+.
T Consensus 1630 PKGILLiGPPGTGKTlLAKALA~es----------~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~ 1699 (2281)
T CHL00206 1630 SRGILVIGSIGTGRSYLVKYLATNS----------YVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDT 1699 (2281)
T ss_pred CCceEEECCCCCCHHHHHHHHHHhc----------CCceEEEEHHHHhhcccccccccccccccccccccccccccccch
Confidence 4689999999999999999999977 5566777777666321
Q ss_pred ------------cccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhccccc-------CC
Q 007723 362 ------------KERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG-------RG 422 (591)
Q Consensus 362 ------------~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le-------~g 422 (591)
...+.-..+++.+|+.+++..++||||||||.+..... ..-..+.|+..|. ..
T Consensus 1700 e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds--------~~ltL~qLLneLDg~~~~~s~~ 1771 (2281)
T CHL00206 1700 ELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNES--------NYLSLGLLVNSLSRDCERCSTR 1771 (2281)
T ss_pred hhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCcc--------ceehHHHHHHHhccccccCCCC
Confidence 00111123478899999999999999999999953311 1111344444443 24
Q ss_pred cEEEEecCChhHHHhhhcccHHHHc--cCc-ceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHH--HHHHHHHHhHHhh
Q 007723 423 ELQCIASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLE--AINAAVHLSARYI 497 (591)
Q Consensus 423 ~v~lI~att~~e~~~~~~~d~aL~~--Rf~-~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~--al~~l~~~s~r~i 497 (591)
.++|||||+.++ .+||||.| ||+ .|.|..|+..++.+++..+... .++.+.++ .++.+++.+.+|-
T Consensus 1772 ~VIVIAATNRPD-----~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~t----kg~~L~~~~vdl~~LA~~T~GfS 1842 (2281)
T CHL00206 1772 NILVIASTHIPQ-----KVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYT----RGFHLEKKMFHTNGFGSITMGSN 1842 (2281)
T ss_pred CEEEEEeCCCcc-----cCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhh----cCCCCCcccccHHHHHHhCCCCC
Confidence 689999999864 68999999 998 5899999998888877644321 24444433 2677777776663
Q ss_pred hcCCCcHHHHHHHHHHhhHhhhhhh
Q 007723 498 SDRYLPDKAIDLVDEAGSRAHIELF 522 (591)
Q Consensus 498 ~~~~lp~~ai~lld~a~a~~~~~~~ 522 (591)
. ...-.++.+|+..+...+.
T Consensus 1843 G-----ADLanLvNEAaliAirq~k 1862 (2281)
T CHL00206 1843 A-----RDLVALTNEALSISITQKK 1862 (2281)
T ss_pred H-----HHHHHHHHHHHHHHHHcCC
Confidence 3 3456677888765544443
No 106
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.59 E-value=1.9e-14 Score=166.70 Aligned_cols=186 Identities=20% Similarity=0.254 Sum_probs=124.9
Q ss_pred ccCCcHHHHHHHHHHHHhc------CCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhh-----c
Q 007723 291 PVIGRETEIQRIIQILCRR------TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM-----A 359 (591)
Q Consensus 291 ~vvG~~~~i~~l~~~L~~~------~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~-----~ 359 (591)
+++|+++.++++.+.+... .+.+++|+||||||||++|++||..+ +..++.++++.+. .
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l----------~~~~~~i~~~~~~~~~~i~ 390 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL----------NRKFVRFSLGGVRDEAEIR 390 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh----------cCCeEEEeCCCcccHHHHc
Confidence 4889999999988865422 33568999999999999999999988 3445555433211 1
Q ss_pred c--ccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccC----------------
Q 007723 360 G--AKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR---------------- 421 (591)
Q Consensus 360 g--~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~---------------- 421 (591)
| ..+.|....++...+..+.. .+.|+||||||.+.... ..+..+.|+..|+.
T Consensus 391 g~~~~~~g~~~g~i~~~l~~~~~-~~~villDEidk~~~~~---------~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d 460 (775)
T TIGR00763 391 GHRRTYVGAMPGRIIQGLKKAKT-KNPLFLLDEIDKIGSSF---------RGDPASALLEVLDPEQNNAFSDHYLDVPFD 460 (775)
T ss_pred CCCCceeCCCCchHHHHHHHhCc-CCCEEEEechhhcCCcc---------CCCHHHHHHHhcCHHhcCccccccCCceec
Confidence 1 12334433444445544432 34489999999995321 11234455544431
Q ss_pred -CcEEEEecCChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHH-HHHHhhc-----CCCCcHHHHHHHHHHhH
Q 007723 422 -GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLR-EKYEAHH-----NCKFTLEAINAAVHLSA 494 (591)
Q Consensus 422 -g~v~lI~att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~-~~~~~~~-----~i~i~~~al~~l~~~s~ 494 (591)
+++++|+|+|.. ..++++|++||..|.+..|+.++..+|++..+ .+....+ ++.++++++.++++...
T Consensus 461 ~s~v~~I~TtN~~-----~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~ 535 (775)
T TIGR00763 461 LSKVIFIATANSI-----DTIPRPLLDRMEVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYT 535 (775)
T ss_pred cCCEEEEEecCCc-----hhCCHHHhCCeeEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcC
Confidence 467888888874 35789999999999999999999999997754 3333333 45799999999998554
Q ss_pred HhhhcCC
Q 007723 495 RYISDRY 501 (591)
Q Consensus 495 r~i~~~~ 501 (591)
+....|.
T Consensus 536 ~e~g~R~ 542 (775)
T TIGR00763 536 REAGVRN 542 (775)
T ss_pred hhcCChH
Confidence 4444433
No 107
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.58 E-value=4.5e-14 Score=148.37 Aligned_cols=200 Identities=16% Similarity=0.151 Sum_probs=134.6
Q ss_pred cccCCCCccCCcHHHHHHHHHHHHhcCCCC-CeEecCCCCcHHHHHHHHHHHHHhCC----CCcccc----Cce------
Q 007723 284 ASEELIDPVIGRETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAE----VPVFLL----SKR------ 348 (591)
Q Consensus 284 ~r~~~~~~vvG~~~~i~~l~~~L~~~~~~~-ilL~GppGvGKT~la~~lA~~l~~~~----~p~~~~----~~~------ 348 (591)
..|..++.++|+++.+..+...+...+.+| +||+||+|+|||++|+.+|+.+.+.. .|.... .+.
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~ 96 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIA 96 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHHH
Confidence 578899999999999999999998877666 78999999999999999999997732 121111 111
Q ss_pred ------EEEeehhh-hhccccccchHHHHHHHHHHHHH----hcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcc
Q 007723 349 ------IMSLDMGL-LMAGAKERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKP 417 (591)
Q Consensus 349 ------~~~ld~~~-l~~g~~~~g~~~~~i~~i~~~~~----~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~ 417 (591)
++.+.... .-.+.....-..+.++.+.+.+. ..+..|+||||+|.| +...+|.|+.
T Consensus 97 ~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l-------------~~~aanaLLk 163 (351)
T PRK09112 97 QGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDM-------------NRNAANAILK 163 (351)
T ss_pred cCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhc-------------CHHHHHHHHH
Confidence 11111000 00000001111233455544443 245689999999999 6778899999
Q ss_pred cccCC--cEEEEecCChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHH
Q 007723 418 SLGRG--ELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495 (591)
Q Consensus 418 ~le~g--~v~lI~att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r 495 (591)
.+++. +..+|..++... .+.+++++||..+.+.+|+.++..++|..... ...++++++..+++++.+
T Consensus 164 ~LEEpp~~~~fiLit~~~~-----~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~------~~~~~~~~~~~i~~~s~G 232 (351)
T PRK09112 164 TLEEPPARALFILISHSSG-----RLLPTIRSRCQPISLKPLDDDELKKALSHLGS------SQGSDGEITEALLQRSKG 232 (351)
T ss_pred HHhcCCCCceEEEEECChh-----hccHHHHhhccEEEecCCCHHHHHHHHHHhhc------ccCCCHHHHHHHHHHcCC
Confidence 99853 334444343322 35699999999999999999999999976321 122778888888888765
Q ss_pred hhhcCCCcHHHHHHHHHH
Q 007723 496 YISDRYLPDKAIDLVDEA 513 (591)
Q Consensus 496 ~i~~~~lp~~ai~lld~a 513 (591)
. |..|+.++...
T Consensus 233 ~------pr~Al~ll~~~ 244 (351)
T PRK09112 233 S------VRKALLLLNYG 244 (351)
T ss_pred C------HHHHHHHHhcC
Confidence 4 56677776543
No 108
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=5.3e-15 Score=142.49 Aligned_cols=146 Identities=20% Similarity=0.310 Sum_probs=116.2
Q ss_pred cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEE
Q 007723 309 RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFI 388 (591)
Q Consensus 309 ~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfI 388 (591)
..++++++|||||||||+|++++|+.- ...|+.+..++++. +|.|+--..++++|..+++..+.|+||
T Consensus 187 dpprgvllygppg~gktml~kava~~t----------~a~firvvgsefvq--kylgegprmvrdvfrlakenapsiifi 254 (408)
T KOG0727|consen 187 DPPRGVLLYGPPGTGKTMLAKAVANHT----------TAAFIRVVGSEFVQ--KYLGEGPRMVRDVFRLAKENAPSIIFI 254 (408)
T ss_pred CCCcceEEeCCCCCcHHHHHHHHhhcc----------chheeeeccHHHHH--HHhccCcHHHHHHHHHHhccCCcEEEe
Confidence 456889999999999999999999865 45677777777763 466776777999999999999999999
Q ss_pred cCcchhhcCCCCCCCCCCccHHHHHhhccccc-------CCcEEEEecCChhHHHhhhcccHHHHc--cCc-ceeecCCC
Q 007723 389 DEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG-------RGELQCIASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPS 458 (591)
Q Consensus 389 DEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le-------~g~v~lI~att~~e~~~~~~~d~aL~~--Rf~-~i~i~~p~ 458 (591)
|||+.+..++...+ .+...+++.+|..++. ..++.+|.+||..+ .+||+|.| |++ .|+|+.|+
T Consensus 255 deidaiatkrfdaq--tgadrevqril~ellnqmdgfdq~~nvkvimatnrad-----tldpallrpgrldrkiefplpd 327 (408)
T KOG0727|consen 255 DEIDAIATKRFDAQ--TGADREVQRILIELLNQMDGFDQTTNVKVIMATNRAD-----TLDPALLRPGRLDRKIEFPLPD 327 (408)
T ss_pred ehhhhHhhhhcccc--ccccHHHHHHHHHHHHhccCcCcccceEEEEecCccc-----ccCHhhcCCccccccccCCCCc
Confidence 99999976543222 1446778887776664 34789999999864 58899998 887 59999999
Q ss_pred HHHHHHHHHHHHHHH
Q 007723 459 QEDAVRILLGLREKY 473 (591)
Q Consensus 459 ~~e~~~iL~~~~~~~ 473 (591)
..+..-++..+..+.
T Consensus 328 rrqkrlvf~titskm 342 (408)
T KOG0727|consen 328 RRQKRLVFSTITSKM 342 (408)
T ss_pred hhhhhhhHHhhhhcc
Confidence 999888887777654
No 109
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=1.2e-14 Score=140.69 Aligned_cols=185 Identities=19% Similarity=0.275 Sum_probs=134.2
Q ss_pred CCCccCCcHHHHHHHHHHHHh-------------cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeeh
Q 007723 288 LIDPVIGRETEIQRIIQILCR-------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (591)
Q Consensus 288 ~~~~vvG~~~~i~~l~~~L~~-------------~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~ 354 (591)
...++-|.+..|+.|++.+-- +.+.++++|||||||||.+|++.|..- +..|..+-.
T Consensus 169 ~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT----------~aTFLKLAg 238 (424)
T KOG0652|consen 169 QYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQT----------NATFLKLAG 238 (424)
T ss_pred cccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhc----------cchHHHhcc
Confidence 456788999999999886421 344678999999999999999998754 333333333
Q ss_pred hhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccc-------cCCcEEEE
Q 007723 355 GLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL-------GRGELQCI 427 (591)
Q Consensus 355 ~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~l-------e~g~v~lI 427 (591)
..++ -.+.|+-...+++.|..+++..+.|+||||++.+-.++.. +.+.+..+++..++.++ ....+.+|
T Consensus 239 PQLV--QMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfD--Sek~GDREVQRTMLELLNQLDGFss~~~vKvi 314 (424)
T KOG0652|consen 239 PQLV--QMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFD--SEKAGDREVQRTMLELLNQLDGFSSDDRVKVI 314 (424)
T ss_pred hHHH--hhhhcchHHHHHHHHHHhhccCCeEEEEechhhhcccccc--ccccccHHHHHHHHHHHHhhcCCCCccceEEE
Confidence 3333 2356777888999999888888999999999998443322 23355666665555444 35679999
Q ss_pred ecCChhHHHhhhcccHHHHc--cCc-ceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHH-HHHHHHHhHHhh
Q 007723 428 ASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEA-INAAVHLSARYI 497 (591)
Q Consensus 428 ~att~~e~~~~~~~d~aL~~--Rf~-~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~a-l~~l~~~s~r~i 497 (591)
++||.-+ -+||+|.| |++ .|+|+.|+.+.+..|++-..++. .+++++ .+.+++-+..|-
T Consensus 315 AATNRvD-----iLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKM------nv~~DvNfeELaRsTddFN 377 (424)
T KOG0652|consen 315 AATNRVD-----ILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKM------NVSDDVNFEELARSTDDFN 377 (424)
T ss_pred eeccccc-----ccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhc------CCCCCCCHHHHhhcccccC
Confidence 9999854 57899998 887 59999999999999998776654 444443 566666655553
No 110
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.57 E-value=2e-13 Score=145.32 Aligned_cols=218 Identities=20% Similarity=0.264 Sum_probs=142.5
Q ss_pred ccccccCCCCccCCcHHHHHHHHHHHHh----cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhh
Q 007723 281 TARASEELIDPVIGRETEIQRIIQILCR----RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGL 356 (591)
Q Consensus 281 ~~~~r~~~~~~vvG~~~~i~~l~~~L~~----~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~ 356 (591)
...|.|. .++||+++++.|...+.. ...++++|+||||||||++++.+++.+.+.. +..-....++++++..
T Consensus 9 ~~~~~p~---~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~-~~~~~~~~~v~in~~~ 84 (365)
T TIGR02928 9 EPDYVPD---RIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAA-EDRDVRVVTVYVNCQI 84 (365)
T ss_pred CCCCCCC---CCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHh-hccCCceEEEEEECCC
Confidence 3445553 689999999999988764 3457899999999999999999998875311 0000014556666432
Q ss_pred hh-------------c--cc--cccc-hHHHHHHHHHHHHHh-cCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcc
Q 007723 357 LM-------------A--GA--KERG-ELEARVTTLISEIQK-SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKP 417 (591)
Q Consensus 357 l~-------------~--g~--~~~g-~~~~~i~~i~~~~~~-~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~ 417 (591)
.. . |. ...+ ...+.++.+++.+.. ..+.||+|||+|.|.+. ..++...|..
T Consensus 85 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~----------~~~~L~~l~~ 154 (365)
T TIGR02928 85 LDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGD----------DDDLLYQLSR 154 (365)
T ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccC----------CcHHHHhHhc
Confidence 11 0 11 1111 233444555555543 34678999999999622 1223333333
Q ss_pred c-----ccCCcEEEEecCChhHHHhhhcccHHHHccCc--ceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHH
Q 007723 418 S-----LGRGELQCIASTTQDEHRTQFEKDKALARRFQ--PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAV 490 (591)
Q Consensus 418 ~-----le~g~v~lI~att~~e~~~~~~~d~aL~~Rf~--~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~ 490 (591)
. +....+.+|++++...+. ..+++.+.+||. .+.+++++.+++.+||+...... ..+..+++++++.++
T Consensus 155 ~~~~~~~~~~~v~lI~i~n~~~~~--~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~--~~~~~~~~~~l~~i~ 230 (365)
T TIGR02928 155 ARSNGDLDNAKVGVIGISNDLKFR--ENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKA--FYDGVLDDGVIPLCA 230 (365)
T ss_pred cccccCCCCCeEEEEEEECCcchH--hhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhh--ccCCCCChhHHHHHH
Confidence 3 123568888888775432 246788999995 58999999999999998776521 123458899999888
Q ss_pred HHhHHhhhcCCCcHHHHHHHHHHhhHhhh
Q 007723 491 HLSARYISDRYLPDKAIDLVDEAGSRAHI 519 (591)
Q Consensus 491 ~~s~r~i~~~~lp~~ai~lld~a~a~~~~ 519 (591)
..+.+.-.+ +++++++++.|+..+..
T Consensus 231 ~~~~~~~Gd---~R~al~~l~~a~~~a~~ 256 (365)
T TIGR02928 231 ALAAQEHGD---ARKAIDLLRVAGEIAER 256 (365)
T ss_pred HHHHHhcCC---HHHHHHHHHHHHHHHHH
Confidence 877654433 77899999988755443
No 111
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.57 E-value=5.7e-14 Score=159.11 Aligned_cols=203 Identities=19% Similarity=0.267 Sum_probs=138.2
Q ss_pred CCCCccCCcHHHHHHHHHHHHh------------cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeeh
Q 007723 287 ELIDPVIGRETEIQRIIQILCR------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (591)
Q Consensus 287 ~~~~~vvG~~~~i~~l~~~L~~------------~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~ 354 (591)
..|+++.|.+...+++.+++.- ..+.+++|+||||||||+++++++..+ +.+++.++.
T Consensus 149 ~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~----------~~~f~~is~ 218 (644)
T PRK10733 149 TTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA----------KVPFFTISG 218 (644)
T ss_pred CcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc----------CCCEEEEeh
Confidence 4567788888777776665431 124679999999999999999999877 556777777
Q ss_pred hhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCC-CCCccHHHHHhhccccc----CCcEEEEec
Q 007723 355 GLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRG-NKGTGLDISNLLKPSLG----RGELQCIAS 429 (591)
Q Consensus 355 ~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~-~~~~~~~~~n~L~~~le----~g~v~lI~a 429 (591)
+.+.. .+.|.....++.+|..+....++||||||+|.+...+..+.+ .........|.|+..|+ ...+++|++
T Consensus 219 ~~~~~--~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaa 296 (644)
T PRK10733 219 SDFVE--MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAA 296 (644)
T ss_pred HHhHH--hhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEe
Confidence 66553 244556677888998888788899999999999765433211 01112234455554443 456899999
Q ss_pred CChhHHHhhhcccHHHHc--cCc-ceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHH-HHHHHHHHhHHhhhcCCCcHH
Q 007723 430 TTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLE-AINAAVHLSARYISDRYLPDK 505 (591)
Q Consensus 430 tt~~e~~~~~~~d~aL~~--Rf~-~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~-al~~l~~~s~r~i~~~~lp~~ 505 (591)
||..+ .+|+++.| ||+ .|.++.|+.+++.+||+.+..+. .+.++ .+..+++.+.+| .+..
T Consensus 297 TN~p~-----~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~------~l~~~~d~~~la~~t~G~-----sgad 360 (644)
T PRK10733 297 TNRPD-----VLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRV------PLAPDIDAAIIARGTPGF-----SGAD 360 (644)
T ss_pred cCChh-----hcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcC------CCCCcCCHHHHHhhCCCC-----CHHH
Confidence 99864 58899998 997 59999999999999998766543 22211 133445444443 2334
Q ss_pred HHHHHHHHhhHh
Q 007723 506 AIDLVDEAGSRA 517 (591)
Q Consensus 506 ai~lld~a~a~~ 517 (591)
...++.+|+..+
T Consensus 361 l~~l~~eAa~~a 372 (644)
T PRK10733 361 LANLVNEAALFA 372 (644)
T ss_pred HHHHHHHHHHHH
Confidence 556666666443
No 112
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=9.8e-15 Score=141.62 Aligned_cols=166 Identities=22% Similarity=0.288 Sum_probs=129.3
Q ss_pred CCCccCCcHHHHHHHHHHHHhc-------------CCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeeh
Q 007723 288 LIDPVIGRETEIQRIIQILCRR-------------TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (591)
Q Consensus 288 ~~~~vvG~~~~i~~l~~~L~~~-------------~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~ 354 (591)
+..++-|..++|+++.+++.-+ .+.++++|||||||||.+|+++|++- +.-|+.+-.
T Consensus 175 ty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt----------dacfirvig 244 (435)
T KOG0729|consen 175 TYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT----------DACFIRVIG 244 (435)
T ss_pred ccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc----------CceEEeehh
Confidence 5678889999999998876532 34679999999999999999999865 556677666
Q ss_pred hhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccc-------cCCcEEEE
Q 007723 355 GLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL-------GRGELQCI 427 (591)
Q Consensus 355 ~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~l-------e~g~v~lI 427 (591)
++++ -+|.|+-...++++|+-++..+-+|+|+|||+.+-+++.... .++..+++..++.++ .+|++.++
T Consensus 245 selv--qkyvgegarmvrelf~martkkaciiffdeidaiggarfddg--~ggdnevqrtmleli~qldgfdprgnikvl 320 (435)
T KOG0729|consen 245 SELV--QKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDG--AGGDNEVQRTMLELINQLDGFDPRGNIKVL 320 (435)
T ss_pred HHHH--HHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCC--CCCcHHHHHHHHHHHHhccCCCCCCCeEEE
Confidence 7776 357888888899999988877889999999999966543311 134555665544443 37899999
Q ss_pred ecCChhHHHhhhcccHHHHc--cCc-ceeecCCCHHHHHHHHHHHHHH
Q 007723 428 ASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREK 472 (591)
Q Consensus 428 ~att~~e~~~~~~~d~aL~~--Rf~-~i~i~~p~~~e~~~iL~~~~~~ 472 (591)
.+||.+. .+||+|.| |++ .|+|..|+.+-+..|++-+...
T Consensus 321 matnrpd-----tldpallrpgrldrkvef~lpdlegrt~i~kihaks 363 (435)
T KOG0729|consen 321 MATNRPD-----TLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKS 363 (435)
T ss_pred eecCCCC-----CcCHhhcCCcccccceeccCCcccccceeEEEeccc
Confidence 9999864 58899998 887 5999999999988888665543
No 113
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.56 E-value=1.1e-13 Score=137.17 Aligned_cols=189 Identities=14% Similarity=0.198 Sum_probs=121.9
Q ss_pred CCCCccCC--cHHHHHHHHHHHHhcCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhcccccc
Q 007723 287 ELIDPVIG--RETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKER 364 (591)
Q Consensus 287 ~~~~~vvG--~~~~i~~l~~~L~~~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~~~~ 364 (591)
.+|+++++ .+..++.+.+++......+++|+||+|||||++|+.+++..... +..++.+++..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~-------~~~~~~i~~~~~~~~---- 80 (226)
T TIGR03420 12 PTFDNFYAGGNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEER-------GKSAIYLPLAELAQA---- 80 (226)
T ss_pred hhhcCcCcCCcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhc-------CCcEEEEeHHHHHHh----
Confidence 35666663 55578888887766677889999999999999999999987532 345677777665421
Q ss_pred chHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCCcEEEEecCChhHHHhhhccc-H
Q 007723 365 GELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKD-K 443 (591)
Q Consensus 365 g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g~v~lI~att~~e~~~~~~~d-~ 443 (591)
...++..+. ...+|||||+|.+.... .....+.+.+......+. .+|.+++... ...... +
T Consensus 81 ------~~~~~~~~~--~~~lLvIDdi~~l~~~~-------~~~~~L~~~l~~~~~~~~-~iIits~~~~--~~~~~~~~ 142 (226)
T TIGR03420 81 ------DPEVLEGLE--QADLVCLDDVEAIAGQP-------EWQEALFHLYNRVREAGG-RLLIAGRAAP--AQLPLRLP 142 (226)
T ss_pred ------HHHHHhhcc--cCCEEEEeChhhhcCCh-------HHHHHHHHHHHHHHHcCC-eEEEECCCCh--HHCCcccH
Confidence 122333222 23599999999983210 002223333333223344 3444444322 112233 7
Q ss_pred HHHccCc---ceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhhhcCCCcHHHHHHHHHHh
Q 007723 444 ALARRFQ---PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAG 514 (591)
Q Consensus 444 aL~~Rf~---~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i~~~~lp~~ai~lld~a~ 514 (591)
.|.+||. .|.+++|+.++...+++....+ .++.+++++++.++..+.+.+.. +..+++.+-
T Consensus 143 ~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~----~~~~~~~~~l~~L~~~~~gn~r~------L~~~l~~~~ 206 (226)
T TIGR03420 143 DLRTRLAWGLVFQLPPLSDEEKIAALQSRAAR----RGLQLPDEVADYLLRHGSRDMGS------LMALLDALD 206 (226)
T ss_pred HHHHHHhcCeeEecCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhccCCHHH------HHHHHHHHH
Confidence 8888874 6899999999999998765543 38899999999999876655443 555655544
No 114
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=5e-14 Score=143.89 Aligned_cols=257 Identities=18% Similarity=0.147 Sum_probs=161.5
Q ss_pred CCCccCCcHHHHHHHHHHHHh--------cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhc
Q 007723 288 LIDPVIGRETEIQRIIQILCR--------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA 359 (591)
Q Consensus 288 ~~~~vvG~~~~i~~l~~~L~~--------~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~ 359 (591)
-|+.||=+...-++|.++... ...+|++||||||||||.+|+.||+.. + +|..-+..
T Consensus 353 pl~~ViL~psLe~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~S----------G-----lDYA~mTG 417 (630)
T KOG0742|consen 353 PLEGVILHPSLEKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHS----------G-----LDYAIMTG 417 (630)
T ss_pred CcCCeecCHHHHHHHHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhhc----------C-----CceehhcC
Confidence 388888877766666665332 122789999999999999999999875 1 11111111
Q ss_pred cc--cccchHHHHHHHHHHHHHhc-CCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccc--cCCcEEEEecCChhH
Q 007723 360 GA--KERGELEARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL--GRGELQCIASTTQDE 434 (591)
Q Consensus 360 g~--~~~g~~~~~i~~i~~~~~~~-~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~l--e~g~v~lI~att~~e 434 (591)
|. +...+-...|..+|+..++. .+.+|||||.|.++..+....+ ++....+.|.|+--- ....++++.+||.++
T Consensus 418 GDVAPlG~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktym-SEaqRsaLNAlLfRTGdqSrdivLvlAtNrpg 496 (630)
T KOG0742|consen 418 GDVAPLGAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYM-SEAQRSALNALLFRTGDQSRDIVLVLATNRPG 496 (630)
T ss_pred CCccccchHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhh-cHHHHHHHHHHHHHhcccccceEEEeccCCcc
Confidence 11 11123344588899998876 5678999999998876654333 122344455443221 246789999999864
Q ss_pred HHhhhcccHHHHccCc-ceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhhhcCCCcHHHHHHHHHH
Q 007723 435 HRTQFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEA 513 (591)
Q Consensus 435 ~~~~~~~d~aL~~Rf~-~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i~~~~lp~~ai~lld~a 513 (591)
.+|-++.+|++ +|+|+.|..+++..+|.....+|....+..=.+.....+-+.-..-+.-. -+..-+++.++
T Consensus 497 -----dlDsAV~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~--~~~t~~~~~Ea 569 (630)
T KOG0742|consen 497 -----DLDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLA--GFDTGRKCSEA 569 (630)
T ss_pred -----chhHHHHhhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeec--cchHHHHHHHH
Confidence 68899999998 69999999999999999988888644333332333333333222222111 11234556666
Q ss_pred hhHhhhhhhccchhhhhhhhcCChHH-HHHHHHHHhhcchHHHHhhchhhHhhhccCCCc
Q 007723 514 GSRAHIELFKRKKEQQTCILSKPPDD-YWQEIRTVQAMHEVVQGSRLKYDDVVASMGDTS 572 (591)
Q Consensus 514 ~a~~~~~~~~~~~~~~i~~l~~~~~~-~~~~~~~~~~~~d~~~a~~~~~~~~~~~~~~~~ 572 (591)
+. +..+++..+ |..|.-++.+ .|..-.+.+...-|++...++-+++++++...+
T Consensus 570 Ak--kTeGfSGRE---iakLva~vQAavYgsedcvLd~~lf~e~v~ykv~eHqqr~~La~ 624 (630)
T KOG0742|consen 570 AK--KTEGFSGRE---IAKLVASVQAAVYGSEDCVLDEALFDERVDYKVQEHQQRMWLAA 624 (630)
T ss_pred HH--hccCCcHHH---HHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 53 344444333 4455555555 455555667777777777777677776664443
No 115
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=99.55 E-value=1.9e-14 Score=143.63 Aligned_cols=209 Identities=12% Similarity=0.100 Sum_probs=156.2
Q ss_pred chHHHhhchhcccccccCCCCccCCcHHHHHHHHHHHHhcCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceE
Q 007723 270 ASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRI 349 (591)
Q Consensus 270 ~~~l~~~~~~l~~~~r~~~~~~vvG~~~~i~~l~~~L~~~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~ 349 (591)
.+.-.++..+|.++|||..+++++++++.+..+.......+.+|+|+|||||+|||+...+.|+.+.+.. . ....+
T Consensus 21 ~p~~~~~~~pwvekyrP~~l~dv~~~~ei~st~~~~~~~~~lPh~L~YgPPGtGktsti~a~a~~ly~~~---~-~~~m~ 96 (360)
T KOG0990|consen 21 IPQSPQYPQPWVEKYRPPFLGIVIKQEPIWSTENRYSGMPGLPHLLFYGPPGTGKTSTILANARDFYSPH---P-TTSML 96 (360)
T ss_pred CCCCcccCCCCccCCCCchhhhHhcCCchhhHHHHhccCCCCCcccccCCCCCCCCCchhhhhhhhcCCC---C-chhHH
Confidence 3445678899999999999999999999999999987778888999999999999999999999885421 0 12223
Q ss_pred EEeehhhhhccccccchHHHHHHHHHHHHHh-------cCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccC-
Q 007723 350 MSLDMGLLMAGAKERGELEARVTTLISEIQK-------SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR- 421 (591)
Q Consensus 350 ~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~~-------~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~- 421 (591)
.++++++ ....+-..++++. |..... .....+++||.|.+ ..++||+|++.++.
T Consensus 97 lelnaSd----~rgid~vr~qi~~-fast~~~~~fst~~~fKlvILDEADaM-------------T~~AQnALRRviek~ 158 (360)
T KOG0990|consen 97 LELNASD----DRGIDPVRQQIHL-FASTQQPTTYSTHAAFKLVILDEADAM-------------TRDAQNALRRVIEKY 158 (360)
T ss_pred HHhhccC----ccCCcchHHHHHH-HHhhccceeccccCceeEEEecchhHh-------------hHHHHHHHHHHHHHh
Confidence 3333332 1223333333332 222221 25679999999999 88999999998873
Q ss_pred -CcEEEEecCChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhhhcC
Q 007723 422 -GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500 (591)
Q Consensus 422 -g~v~lI~att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i~~~ 500 (591)
.+++++..+++. -...+++.+||..+.+.+.+......++.++++.. .+.++++....++.++.+.++.
T Consensus 159 t~n~rF~ii~n~~-----~ki~pa~qsRctrfrf~pl~~~~~~~r~shi~e~e----~~~~~~~~~~a~~r~s~gDmr~- 228 (360)
T KOG0990|consen 159 TANTRFATISNPP-----QKIHPAQQSRCTRFRFAPLTMAQQTERQSHIRESE----QKETNPEGYSALGRLSVGDMRV- 228 (360)
T ss_pred ccceEEEEeccCh-----hhcCchhhcccccCCCCCCChhhhhhHHHHHHhcc----hhhcCHHHHHHHHHHhHHHHHH-
Confidence 345555555553 24669999999999999999999888888887755 7788999999988888877654
Q ss_pred CCcHHHHHHHHHHhh
Q 007723 501 YLPDKAIDLVDEAGS 515 (591)
Q Consensus 501 ~lp~~ai~lld~a~a 515 (591)
|++.|+...+
T Consensus 229 -----a~n~Lqs~~~ 238 (360)
T KOG0990|consen 229 -----ALNYLQSILK 238 (360)
T ss_pred -----HHHHHHHHHH
Confidence 8888886654
No 116
>PRK06620 hypothetical protein; Validated
Probab=99.55 E-value=7e-14 Score=137.33 Aligned_cols=162 Identities=13% Similarity=0.133 Sum_probs=112.2
Q ss_pred CCCccC-CcHH--HHHHHHHHHHhcC----CCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhcc
Q 007723 288 LIDPVI-GRET--EIQRIIQILCRRT----KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAG 360 (591)
Q Consensus 288 ~~~~vv-G~~~--~i~~l~~~L~~~~----~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g 360 (591)
+|+++| |... ....+.++..... .++++||||||+|||||++++++.. +. +.+....
T Consensus 14 tfd~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~----------~~--~~~~~~~---- 77 (214)
T PRK06620 14 HPDEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLS----------NA--YIIKDIF---- 77 (214)
T ss_pred CchhhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhcc----------CC--EEcchhh----
Confidence 455544 5422 4444554443222 1458999999999999999987754 11 1111000
Q ss_pred ccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCCcEEEEecCChhHHHhhhc
Q 007723 361 AKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440 (591)
Q Consensus 361 ~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g~v~lI~att~~e~~~~~~ 440 (591)
. . ...+ ....+|+|||||.+. ...+.+.+....+.|..++|++++++. .+.
T Consensus 78 --~-~------~~~~-----~~~d~lliDdi~~~~------------~~~lf~l~N~~~e~g~~ilits~~~p~---~l~ 128 (214)
T PRK06620 78 --F-N------EEIL-----EKYNAFIIEDIENWQ------------EPALLHIFNIINEKQKYLLLTSSDKSR---NFT 128 (214)
T ss_pred --h-c------hhHH-----hcCCEEEEeccccch------------HHHHHHHHHHHHhcCCEEEEEcCCCcc---ccc
Confidence 0 0 0111 123589999999761 245667777777888888888888876 345
Q ss_pred ccHHHHccCc---ceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhhhc
Q 007723 441 KDKALARRFQ---PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499 (591)
Q Consensus 441 ~d~aL~~Rf~---~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i~~ 499 (591)
+ ++|++||. .+.+.+|+.+++..++++.+... ++.+++++++++++.+.+.++.
T Consensus 129 l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~----~l~l~~ev~~~L~~~~~~d~r~ 185 (214)
T PRK06620 129 L-PDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS----SVTISRQIIDFLLVNLPREYSK 185 (214)
T ss_pred h-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHccCCHHH
Confidence 6 89999998 79999999999988887766643 8999999999999999888765
No 117
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.55 E-value=1.1e-13 Score=137.34 Aligned_cols=176 Identities=14% Similarity=0.170 Sum_probs=112.9
Q ss_pred cCCCCccC-Cc-HHHHHHHHHHHHh-cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhcccc
Q 007723 286 EELIDPVI-GR-ETEIQRIIQILCR-RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAK 362 (591)
Q Consensus 286 ~~~~~~vv-G~-~~~i~~l~~~L~~-~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~~ 362 (591)
+-+|++++ |. ...+..+..+... ....+++|+||+|||||+|++++++..... +..++.+++..+...
T Consensus 14 ~~~~d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~-------~~~~~~i~~~~~~~~-- 84 (227)
T PRK08903 14 PPTFDNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYG-------GRNARYLDAASPLLA-- 84 (227)
T ss_pred hhhhcccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhC-------CCcEEEEehHHhHHH--
Confidence 45688877 33 3444555554442 345689999999999999999999987542 455666665543210
Q ss_pred ccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCCcEEEEecCChhHHHhhhccc
Q 007723 363 ERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKD 442 (591)
Q Consensus 363 ~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g~v~lI~att~~e~~~~~~~d 442 (591)
+.. .....+|||||+|.+.. .....+.+.+....+.+..++|.+++..+ ....+.
T Consensus 85 ------------~~~--~~~~~~liiDdi~~l~~---------~~~~~L~~~~~~~~~~~~~~vl~~~~~~~--~~~~l~ 139 (227)
T PRK08903 85 ------------FDF--DPEAELYAVDDVERLDD---------AQQIALFNLFNRVRAHGQGALLVAGPAAP--LALPLR 139 (227)
T ss_pred ------------Hhh--cccCCEEEEeChhhcCc---------hHHHHHHHHHHHHHHcCCcEEEEeCCCCH--HhCCCC
Confidence 111 12356899999999821 11222333333332455544555554332 123456
Q ss_pred HHHHccC---cceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhhhc
Q 007723 443 KALARRF---QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499 (591)
Q Consensus 443 ~aL~~Rf---~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i~~ 499 (591)
+.|.+|| ..+.+++|+.++...++..+..+ .++.+++++++++++.+.+.+..
T Consensus 140 ~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~----~~v~l~~~al~~L~~~~~gn~~~ 195 (227)
T PRK08903 140 EDLRTRLGWGLVYELKPLSDADKIAALKAAAAE----RGLQLADEVPDYLLTHFRRDMPS 195 (227)
T ss_pred HHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhccCCHHH
Confidence 8899887 36899999998888887765544 48999999999999977666444
No 118
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.55 E-value=7.7e-14 Score=155.56 Aligned_cols=223 Identities=12% Similarity=0.084 Sum_probs=144.3
Q ss_pred chhcccccccCCCCccCCcHHHHHHHHHHHHhcCC-----CCCeEecCCCCcHHHHHHHHHHHHHhCC---C-Ccccc-C
Q 007723 277 CVDLTARASEELIDPVIGRETEIQRIIQILCRRTK-----NNPILLGESGVGKTAIAEGLAIRIVQAE---V-PVFLL-S 346 (591)
Q Consensus 277 ~~~l~~~~r~~~~~~vvG~~~~i~~l~~~L~~~~~-----~~ilL~GppGvGKT~la~~lA~~l~~~~---~-p~~~~-~ 346 (591)
..+|+++|+|..+++++|+++.++.+..++..... .-++|+||||+|||++++.++..+...- . |.... .
T Consensus 71 ~~pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~ 150 (637)
T TIGR00602 71 NEPWVEKYKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQ 150 (637)
T ss_pred cCchHHHhCCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhccc
Confidence 35799999999999999999999999988876332 2278999999999999999998763210 0 00000 0
Q ss_pred ceEEEeehhhhhccccccchHHHHHHHHHHHHH----------hcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhc
Q 007723 347 KRIMSLDMGLLMAGAKERGELEARVTTLISEIQ----------KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLK 416 (591)
Q Consensus 347 ~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~----------~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~ 416 (591)
...+. ....+.........-.+.++.++..+. .....||||||++.++... ...++++|+
T Consensus 151 ~~~~~-~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~---------~~~lq~lLr 220 (637)
T TIGR00602 151 KNDHK-VTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRD---------TRALHEILR 220 (637)
T ss_pred ccccc-cchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhh---------HHHHHHHHH
Confidence 00000 000000000000111122344444332 1346799999998875321 345667777
Q ss_pred -ccccCCcEEEEecCChhHH------Hhhhc----ccHHHHc--cCcceeecCCCHHHHHHHHHHHHHHHHhhc--CCCC
Q 007723 417 -PSLGRGELQCIASTTQDEH------RTQFE----KDKALAR--RFQPVLISEPSQEDAVRILLGLREKYEAHH--NCKF 481 (591)
Q Consensus 417 -~~le~g~v~lI~att~~e~------~~~~~----~d~aL~~--Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~--~i~i 481 (591)
...+.+.+.+|+++|...+ ...+. +.+++++ |+..|.|.+.....+.+.|..++....... ...+
T Consensus 221 ~~~~e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~ 300 (637)
T TIGR00602 221 WKYVSIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKV 300 (637)
T ss_pred HHhhcCCCceEEEEecCCccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhcccccccc
Confidence 6667787878887775432 11122 3478887 556799999999999999999887643221 2223
Q ss_pred -cHHHHHHHHHHhHHhhhcCCCcHHHHHHHHHHhh
Q 007723 482 -TLEAINAAVHLSARYISDRYLPDKAIDLVDEAGS 515 (591)
Q Consensus 482 -~~~al~~l~~~s~r~i~~~~lp~~ai~lld~a~a 515 (591)
++++++.++..+.+.++. ||..|+-+|.
T Consensus 301 p~~~~l~~I~~~s~GDiRs------AIn~LQf~~~ 329 (637)
T TIGR00602 301 PKKTSVELLCQGCSGDIRS------AINSLQFSSS 329 (637)
T ss_pred CCHHHHHHHHHhCCChHHH------HHHHHHHHHh
Confidence 678999999988888776 9999998864
No 119
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.54 E-value=4.1e-14 Score=127.35 Aligned_cols=122 Identities=26% Similarity=0.374 Sum_probs=94.8
Q ss_pred CeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhccccccchHHHHHHHHHHHHHhcC-CeEEEEcCcc
Q 007723 314 PILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSG-DVILFIDEVH 392 (591)
Q Consensus 314 ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~~~~-~~ILfIDEi~ 392 (591)
++|+||||||||++++.+++.+ +.+++.++...+. ..+.++....+..++..+.+.. +.||||||+|
T Consensus 1 ill~G~~G~GKT~l~~~la~~l----------~~~~~~i~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d 68 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL----------GFPFIEIDGSELI--SSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEID 68 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT----------TSEEEEEETTHHH--TSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGG
T ss_pred CEEECcCCCCeeHHHHHHHhhc----------ccccccccccccc--cccccccccccccccccccccccceeeeeccch
Confidence 5899999999999999999988 6789999998887 3367788899999999988776 8999999999
Q ss_pred hhhcCCCCCCCCCCccHHHHHhhccccc-----CCcEEEEecCChhHHHhhhcccHHHH-ccCcc-eee
Q 007723 393 TLIGSGTVGRGNKGTGLDISNLLKPSLG-----RGELQCIASTTQDEHRTQFEKDKALA-RRFQP-VLI 454 (591)
Q Consensus 393 ~L~~~~~~~~~~~~~~~~~~n~L~~~le-----~g~v~lI~att~~e~~~~~~~d~aL~-~Rf~~-i~i 454 (591)
.+...... ..........+.|...++ ...+.+|++|+.. ..+++++. +||+. |.+
T Consensus 69 ~l~~~~~~--~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~-----~~i~~~l~~~rf~~~i~~ 130 (132)
T PF00004_consen 69 KLFPKSQP--SSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSP-----DKIDPALLRSRFDRRIEF 130 (132)
T ss_dssp GTSHHCST--SSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSG-----GGSCHHHHSTTSEEEEEE
T ss_pred hccccccc--ccccccccccceeeecccccccccccceeEEeeCCh-----hhCCHhHHhCCCcEEEEc
Confidence 99876511 111223445566665554 2458999998884 36889999 99984 554
No 120
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.54 E-value=2e-13 Score=152.18 Aligned_cols=209 Identities=19% Similarity=0.142 Sum_probs=139.2
Q ss_pred CccCCcHHHHHHHHHHHHh----cCCCCC-eEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhh------
Q 007723 290 DPVIGRETEIQRIIQILCR----RTKNNP-ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM------ 358 (591)
Q Consensus 290 ~~vvG~~~~i~~l~~~L~~----~~~~~i-lL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~------ 358 (591)
+.+.||+++++.|..+|.. ...+++ +|+|+||||||++++.+.+.+........+....++++++..+.
T Consensus 755 D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIY 834 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAY 834 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHH
Confidence 4688999999999887754 233455 59999999999999999988753211111223556677653211
Q ss_pred -------ccc-cccc-hHHHHHHHHHHHHHh--cCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhc-ccccCCcEEE
Q 007723 359 -------AGA-KERG-ELEARVTTLISEIQK--SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLK-PSLGRGELQC 426 (591)
Q Consensus 359 -------~g~-~~~g-~~~~~i~~i~~~~~~--~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~-~~le~g~v~l 426 (591)
.+. ...| ...+.+..++..+.. ....||||||||.|...+ +..+.+++. .....+.+.+
T Consensus 835 qvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~---------QDVLYnLFR~~~~s~SKLiL 905 (1164)
T PTZ00112 835 QVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKT---------QKVLFTLFDWPTKINSKLVL 905 (1164)
T ss_pred HHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccH---------HHHHHHHHHHhhccCCeEEE
Confidence 011 1112 223445566665532 234589999999995321 223333333 2223567899
Q ss_pred EecCChhHHHhhhcccHHHHccCcc--eeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhhhcCCCcH
Q 007723 427 IASTTQDEHRTQFEKDKALARRFQP--VLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPD 504 (591)
Q Consensus 427 I~att~~e~~~~~~~d~aL~~Rf~~--i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i~~~~lp~ 504 (591)
||.+|.-++. ..+++.+.+||.. |.|.+++.+++.+||...+... ...+++++++.+++++...-.+ -+
T Consensus 906 IGISNdlDLp--erLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A----~gVLdDdAIELIArkVAq~SGD---AR 976 (1164)
T PTZ00112 906 IAISNTMDLP--ERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENC----KEIIDHTAIQLCARKVANVSGD---IR 976 (1164)
T ss_pred EEecCchhcc--hhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhC----CCCCCHHHHHHHHHhhhhcCCH---HH
Confidence 9999875532 2467899999973 8899999999999998877653 3468999999999977654344 45
Q ss_pred HHHHHHHHHhhH
Q 007723 505 KAIDLVDEAGSR 516 (591)
Q Consensus 505 ~ai~lld~a~a~ 516 (591)
+|+++|..|+..
T Consensus 977 KALDILRrAgEi 988 (1164)
T PTZ00112 977 KALQICRKAFEN 988 (1164)
T ss_pred HHHHHHHHHHhh
Confidence 799999999853
No 121
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.54 E-value=1e-12 Score=141.25 Aligned_cols=210 Identities=18% Similarity=0.207 Sum_probs=138.3
Q ss_pred CccCCcHHHHHHHHHHHHh----cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhh-------
Q 007723 290 DPVIGRETEIQRIIQILCR----RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM------- 358 (591)
Q Consensus 290 ~~vvG~~~~i~~l~~~L~~----~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~------- 358 (591)
+.++||+++++.|...+.. ....+++|+||||+|||++++.+++.+.... .+..++++++....
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~-----~~~~~v~in~~~~~~~~~~~~ 104 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIA-----VKVVYVYINCQIDRTRYAIFS 104 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhc-----CCcEEEEEECCcCCCHHHHHH
Confidence 4589999999999888754 2446789999999999999999999885432 13455666543211
Q ss_pred ------cc--ccccc-hHHHHHHHHHHHHHhc-CCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhccccc---CCcEE
Q 007723 359 ------AG--AKERG-ELEARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG---RGELQ 425 (591)
Q Consensus 359 ------~g--~~~~g-~~~~~i~~i~~~~~~~-~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le---~g~v~ 425 (591)
.+ ....+ .+.+.+..+.+.+.+. .+.||+|||+|.+.... ..+....|...+. ..++.
T Consensus 105 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~---------~~~~l~~l~~~~~~~~~~~v~ 175 (394)
T PRK00411 105 EIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE---------GNDVLYSLLRAHEEYPGARIG 175 (394)
T ss_pred HHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC---------CchHHHHHHHhhhccCCCeEE
Confidence 11 11122 2344445555444433 45789999999995211 1122333333332 23677
Q ss_pred EEecCChhHHHhhhcccHHHHccCc--ceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhhhcCCCc
Q 007723 426 CIASTTQDEHRTQFEKDKALARRFQ--PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLP 503 (591)
Q Consensus 426 lI~att~~e~~~~~~~d~aL~~Rf~--~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i~~~~lp 503 (591)
+|++++...... .+++.+.+||. .|.+++++.+++.+||+..+..- .....+++++++.+++.+.+.-.+ .
T Consensus 176 vI~i~~~~~~~~--~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~--~~~~~~~~~~l~~i~~~~~~~~Gd---~ 248 (394)
T PRK00411 176 VIGISSDLTFLY--ILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEG--FYPGVVDDEVLDLIADLTAREHGD---A 248 (394)
T ss_pred EEEEECCcchhh--hcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhh--cccCCCCHhHHHHHHHHHHHhcCc---H
Confidence 788777654322 26788888885 58999999999999998766421 223468999999999998764333 5
Q ss_pred HHHHHHHHHHhhHhhhh
Q 007723 504 DKAIDLVDEAGSRAHIE 520 (591)
Q Consensus 504 ~~ai~lld~a~a~~~~~ 520 (591)
..+++++..|+..+...
T Consensus 249 r~a~~ll~~a~~~a~~~ 265 (394)
T PRK00411 249 RVAIDLLRRAGLIAERE 265 (394)
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 67899998887554433
No 122
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=1.2e-14 Score=152.40 Aligned_cols=171 Identities=22% Similarity=0.334 Sum_probs=130.1
Q ss_pred cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhccccccchHHHHHHHHHHHHHh--------
Q 007723 309 RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK-------- 380 (591)
Q Consensus 309 ~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~~-------- 380 (591)
.+..++|||||||||||.+|+.|...++. .-|.. ++..+++ .+|.|+.|+.++.+|..+++
T Consensus 254 ~HVKGiLLyGPPGTGKTLiARqIGkMLNA-rePKI--------VNGPeIL--~KYVGeSE~NvR~LFaDAEeE~r~~g~~ 322 (744)
T KOG0741|consen 254 KHVKGILLYGPPGTGKTLIARQIGKMLNA-REPKI--------VNGPEIL--NKYVGESEENVRKLFADAEEEQRRLGAN 322 (744)
T ss_pred cceeeEEEECCCCCChhHHHHHHHHHhcC-CCCcc--------cCcHHHH--HHhhcccHHHHHHHHHhHHHHHHhhCcc
Confidence 44567899999999999999999998743 22322 2344444 46899999999999998864
Q ss_pred cCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhccccc----CCcEEEEecCChhHHHhhhcccHHHHc--cCc-cee
Q 007723 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG----RGELQCIASTTQDEHRTQFEKDKALAR--RFQ-PVL 453 (591)
Q Consensus 381 ~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le----~g~v~lI~att~~e~~~~~~~d~aL~~--Rf~-~i~ 453 (591)
.+--|+++||||.++..+....++.+-...+.|.|+.-|. -.++.+||.||..+ -+|.+|+| ||. .++
T Consensus 323 SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~D-----lIDEALLRPGRlEVqmE 397 (744)
T KOG0741|consen 323 SGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKD-----LIDEALLRPGRLEVQME 397 (744)
T ss_pred CCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchh-----hHHHHhcCCCceEEEEE
Confidence 2335888899999998866655556667788899887764 25799999999975 36899999 998 499
Q ss_pred ecCCCHHHHHHHHHHHHHHHHhhcCCCCcHH-HHHHHHHHhHHhh
Q 007723 454 ISEPSQEDAVRILLGLREKYEAHHNCKFTLE-AINAAVHLSARYI 497 (591)
Q Consensus 454 i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~-al~~l~~~s~r~i 497 (591)
+..|++.-+.+||+-...+...+ +. ++++ .++.++.+++.|-
T Consensus 398 IsLPDE~gRlQIl~IHT~rMre~-~~-l~~dVdl~elA~lTKNfS 440 (744)
T KOG0741|consen 398 ISLPDEKGRLQILKIHTKRMREN-NK-LSADVDLKELAALTKNFS 440 (744)
T ss_pred EeCCCccCceEEEEhhhhhhhhc-CC-CCCCcCHHHHHHHhcCCc
Confidence 99999999999998777665433 32 3333 3788888887663
No 123
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.53 E-value=2.8e-13 Score=142.44 Aligned_cols=112 Identities=26% Similarity=0.331 Sum_probs=81.9
Q ss_pred CCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccC------------CcEEEEecCChhHHHhhhcccHHHHccC
Q 007723 382 GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR------------GELQCIASTTQDEHRTQFEKDKALARRF 449 (591)
Q Consensus 382 ~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~------------g~v~lI~att~~e~~~~~~~d~aL~~Rf 449 (591)
..+|+||||||.+...+.. .+.+-+..-+|..|+++++. .++.+|++.-...- +.-.+-|.|.-||
T Consensus 249 ~~GIVfiDEiDKIa~~~~~-~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~-kp~DlIPEl~GR~ 326 (443)
T PRK05201 249 QNGIVFIDEIDKIAARGGS-SGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVS-KPSDLIPELQGRF 326 (443)
T ss_pred cCCEEEEEcchhhcccCCC-CCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCC-ChhhccHHHhCcc
Confidence 6789999999999866432 12233345588999999874 46788887654321 2234569999999
Q ss_pred c-ceeecCCCHHHHHHHHHH----HHHHHHh---hcC--CCCcHHHHHHHHHHhHH
Q 007723 450 Q-PVLISEPSQEDAVRILLG----LREKYEA---HHN--CKFTLEAINAAVHLSAR 495 (591)
Q Consensus 450 ~-~i~i~~p~~~e~~~iL~~----~~~~~~~---~~~--i~i~~~al~~l~~~s~r 495 (591)
- ++.+.+++.++...||.. +..+|.. ..+ +.+++++++.+++.+..
T Consensus 327 Pi~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~ 382 (443)
T PRK05201 327 PIRVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQ 382 (443)
T ss_pred ceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHH
Confidence 8 489999999999999944 6666654 223 47899999999999865
No 124
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.53 E-value=3.4e-13 Score=141.70 Aligned_cols=113 Identities=24% Similarity=0.302 Sum_probs=81.6
Q ss_pred cCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccC------------CcEEEEecCChhHHHhhhcccHHHHcc
Q 007723 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR------------GELQCIASTTQDEHRTQFEKDKALARR 448 (591)
Q Consensus 381 ~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~------------g~v~lI~att~~e~~~~~~~d~aL~~R 448 (591)
...+|+||||||.+..++.. .+.+-+..-+|+.|+++++. .++.+|++...... +...+-|.|.-|
T Consensus 246 e~~GIVfiDEiDKIa~~~~~-~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~-kp~DlIPEl~GR 323 (441)
T TIGR00390 246 EQSGIIFIDEIDKIAKKGES-SGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLA-KPSDLIPELQGR 323 (441)
T ss_pred HcCCEEEEEchhhhcccCCC-CCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCC-ChhhccHHHhCc
Confidence 36789999999999866421 12223345588999999874 46788887764421 122356999999
Q ss_pred Cc-ceeecCCCHHHHHHHHH----HHHHHHHh---hcC--CCCcHHHHHHHHHHhHH
Q 007723 449 FQ-PVLISEPSQEDAVRILL----GLREKYEA---HHN--CKFTLEAINAAVHLSAR 495 (591)
Q Consensus 449 f~-~i~i~~p~~~e~~~iL~----~~~~~~~~---~~~--i~i~~~al~~l~~~s~r 495 (591)
|- ++.+.+++.++...||. .+..+|.. ..+ +.+++++++.+++.+..
T Consensus 324 ~Pi~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~ 380 (441)
T TIGR00390 324 FPIRVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYN 380 (441)
T ss_pred cceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHH
Confidence 97 48999999999999994 35555653 333 46899999999999864
No 125
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=1.3e-13 Score=149.16 Aligned_cols=195 Identities=23% Similarity=0.282 Sum_probs=147.6
Q ss_pred CccCCcHHHHHHHHHHHHh-------------cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhh
Q 007723 290 DPVIGRETEIQRIIQILCR-------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGL 356 (591)
Q Consensus 290 ~~vvG~~~~i~~l~~~L~~-------------~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~ 356 (591)
+++.|....+..+...+.- +.+.++++|||||+|||.+++++|++. +..++.++..+
T Consensus 184 ~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~----------~a~~~~i~~pe 253 (693)
T KOG0730|consen 184 DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEY----------GAFLFLINGPE 253 (693)
T ss_pred cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHh----------CceeEecccHH
Confidence 3455655555555443321 335789999999999999999999987 67888899888
Q ss_pred hhccccccchHHHHHHHHHHHHHhcC-CeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhccccc----CCcEEEEecCC
Q 007723 357 LMAGAKERGELEARVTTLISEIQKSG-DVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG----RGELQCIASTT 431 (591)
Q Consensus 357 l~~g~~~~g~~~~~i~~i~~~~~~~~-~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le----~g~v~lI~att 431 (591)
++. ++-|+.+..++..|+++.+.. +.++||||++.+.+++....+ ....+...|+.++. .+++++|++|+
T Consensus 254 li~--k~~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~---~e~Rv~sqlltL~dg~~~~~~vivl~atn 328 (693)
T KOG0730|consen 254 LIS--KFPGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD---VESRVVSQLLTLLDGLKPDAKVIVLAATN 328 (693)
T ss_pred HHH--hcccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch---HHHHHHHHHHHHHhhCcCcCcEEEEEecC
Confidence 884 467899999999999999887 999999999999876543111 12334444444443 57899999998
Q ss_pred hhHHHhhhcccHHHHc-cCcc-eeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhhhcCCCcHHHHHH
Q 007723 432 QDEHRTQFEKDKALAR-RFQP-VLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDL 509 (591)
Q Consensus 432 ~~e~~~~~~~d~aL~~-Rf~~-i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i~~~~lp~~ai~l 509 (591)
.. ..+|++++| ||+. +.+..|+...+.+|++.+..++ +.. ++..+..++..+++|... ..-.+
T Consensus 329 rp-----~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~----~~~-~~~~l~~iA~~thGyvGa-----DL~~l 393 (693)
T KOG0730|consen 329 RP-----DSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKM----NLL-SDVDLEDIAVSTHGYVGA-----DLAAL 393 (693)
T ss_pred Cc-----cccChhhhcCCCcceeeecCCCchhHHHHHHHHHHhc----CCc-chhhHHHHHHHccchhHH-----HHHHH
Confidence 85 368999998 9985 9999999999999998887765 444 677899999999999754 23445
Q ss_pred HHHHh
Q 007723 510 VDEAG 514 (591)
Q Consensus 510 ld~a~ 514 (591)
+.+|.
T Consensus 394 ~~ea~ 398 (693)
T KOG0730|consen 394 CREAS 398 (693)
T ss_pred HHHHH
Confidence 55554
No 126
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.53 E-value=1.6e-13 Score=142.97 Aligned_cols=173 Identities=21% Similarity=0.290 Sum_probs=112.7
Q ss_pred hhcccccccC-CCCccCCcHHHHHHHHHHHHhcCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCC----cc--------c
Q 007723 278 VDLTARASEE-LIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVP----VF--------L 344 (591)
Q Consensus 278 ~~l~~~~r~~-~~~~vvG~~~~i~~l~~~L~~~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p----~~--------~ 344 (591)
.+|+++.++. .|..+|||++....|...+..+..++++|.|++|||||+++++++..+.+..+. .. .
T Consensus 4 ~~~~~~~~~~~pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~p~~~ 83 (350)
T CHL00081 4 NNLKKKERPVFPFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSDPELM 83 (350)
T ss_pred cchhhccCCCCCHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCChhhh
Confidence 4566666655 688999999999999988888888899999999999999999999988653321 10 0
Q ss_pred ------------------cCceEEEeehhhhhccccccc--hHHHHHHHHH-----HHHHhcCCeEEEEcCcchhhcCCC
Q 007723 345 ------------------LSKRIMSLDMGLLMAGAKERG--ELEARVTTLI-----SEIQKSGDVILFIDEVHTLIGSGT 399 (591)
Q Consensus 345 ------------------~~~~~~~ld~~~l~~g~~~~g--~~~~~i~~i~-----~~~~~~~~~ILfIDEi~~L~~~~~ 399 (591)
...+++.+-.+... ....| +.+..+..-. ..+.++++++|||||++.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~te--d~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL----- 156 (350)
T CHL00081 84 SDEVREAIQNGETIETEKIKIPMVDLPLGATE--DRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLL----- 156 (350)
T ss_pred chhhhhhhcccccccceeccccceecCCCCch--hhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhC-----
Confidence 00011111000000 00001 1111111000 0112356789999999999
Q ss_pred CCCCCCCccHHHHHhhcccccCC---------------cEEEEecCChhHHHhhhcccHHHHccCc-ceeecCCC-HHHH
Q 007723 400 VGRGNKGTGLDISNLLKPSLGRG---------------ELQCIASTTQDEHRTQFEKDKALARRFQ-PVLISEPS-QEDA 462 (591)
Q Consensus 400 ~~~~~~~~~~~~~n~L~~~le~g---------------~v~lI~att~~e~~~~~~~d~aL~~Rf~-~i~i~~p~-~~e~ 462 (591)
....++.|+..|+.+ .+++|++.++.+ ..+.++|.+||. .+.+..|+ .++.
T Consensus 157 --------~~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~e----g~l~~~LldRf~l~i~l~~~~~~~~e 224 (350)
T CHL00081 157 --------DDHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEE----GELRPQLLDRFGMHAEIRTVKDPELR 224 (350)
T ss_pred --------CHHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCccc----CCCCHHHHHHhCceeecCCCCChHHH
Confidence 677788888777542 356777777653 347799999998 58899997 5888
Q ss_pred HHHHHHH
Q 007723 463 VRILLGL 469 (591)
Q Consensus 463 ~~iL~~~ 469 (591)
.+|++..
T Consensus 225 ~~il~~~ 231 (350)
T CHL00081 225 VKIVEQR 231 (350)
T ss_pred HHHHHhh
Confidence 8888763
No 127
>PRK09087 hypothetical protein; Validated
Probab=99.53 E-value=1.6e-13 Score=135.91 Aligned_cols=177 Identities=13% Similarity=0.092 Sum_probs=119.1
Q ss_pred CCCccCC-c-HH-HHHHHHHHHHhcCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhcccccc
Q 007723 288 LIDPVIG-R-ET-EIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKER 364 (591)
Q Consensus 288 ~~~~vvG-~-~~-~i~~l~~~L~~~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~~~~ 364 (591)
+|++++. . .. .+..+.+.. ....+.++|+||+|+|||||+++++... +.. .++...+.
T Consensus 19 ~~~~Fi~~~~N~~a~~~l~~~~-~~~~~~l~l~G~~GsGKThLl~~~~~~~----------~~~--~i~~~~~~------ 79 (226)
T PRK09087 19 GRDDLLVTESNRAAVSLVDHWP-NWPSPVVVLAGPVGSGKTHLASIWREKS----------DAL--LIHPNEIG------ 79 (226)
T ss_pred ChhceeecCchHHHHHHHHhcc-cCCCCeEEEECCCCCCHHHHHHHHHHhc----------CCE--EecHHHcc------
Confidence 5777773 2 33 233222222 2223347999999999999999988753 122 33332211
Q ss_pred chHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCCcEEEEecCChhHHHhhhcc-cH
Q 007723 365 GELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEK-DK 443 (591)
Q Consensus 365 g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g~v~lI~att~~e~~~~~~~-d~ 443 (591)
..++..+. ..+|+|||+|.+. .....+++.+....+.+..++|++++++. .+.. .+
T Consensus 80 -------~~~~~~~~---~~~l~iDDi~~~~----------~~~~~lf~l~n~~~~~g~~ilits~~~p~---~~~~~~~ 136 (226)
T PRK09087 80 -------SDAANAAA---EGPVLIEDIDAGG----------FDETGLFHLINSVRQAGTSLLMTSRLWPS---SWNVKLP 136 (226)
T ss_pred -------hHHHHhhh---cCeEEEECCCCCC----------CCHHHHHHHHHHHHhCCCeEEEECCCChH---Hhccccc
Confidence 11222222 2488999999872 11456777777777888888888877665 2333 68
Q ss_pred HHHccC---cceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhhhcCCCcHHHHHHHHHH
Q 007723 444 ALARRF---QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEA 513 (591)
Q Consensus 444 aL~~Rf---~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i~~~~lp~~ai~lld~a 513 (591)
.|++|| ..+.+.+|+.+++.++|+..+... ++.+++++++++++.+.|.+.. -..+++-|+.+
T Consensus 137 dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~----~~~l~~ev~~~La~~~~r~~~~---l~~~l~~L~~~ 202 (226)
T PRK09087 137 DLKSRLKAATVVEIGEPDDALLSQVIFKLFADR----QLYVDPHVVYYLVSRMERSLFA---AQTIVDRLDRL 202 (226)
T ss_pred cHHHHHhCCceeecCCCCHHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHhhhhHHH---HHHHHHHHHHH
Confidence 899999 579999999999999998877664 8999999999999999988766 23344455533
No 128
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.53 E-value=1.6e-13 Score=142.83 Aligned_cols=164 Identities=21% Similarity=0.285 Sum_probs=103.4
Q ss_pred cCCCCccCCcHHHHHHHHHHHHhcCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccc-------cC------------
Q 007723 286 EELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFL-------LS------------ 346 (591)
Q Consensus 286 ~~~~~~vvG~~~~i~~l~~~L~~~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~-------~~------------ 346 (591)
|-.|..++|+++.++.+.-.+.....+|+||.|+||||||++|++++..+.+-...... ..
T Consensus 4 ~~~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 83 (334)
T PRK13407 4 PFPFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAHVSSTTM 83 (334)
T ss_pred CCCHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCcccccccCCcc
Confidence 45688999999999988765544456899999999999999999999988431100000 00
Q ss_pred ----ceEEEeehh---hhhccccccchHHHHHHH---HHH--HHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHh
Q 007723 347 ----KRIMSLDMG---LLMAGAKERGELEARVTT---LIS--EIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNL 414 (591)
Q Consensus 347 ----~~~~~ld~~---~l~~g~~~~g~~~~~i~~---i~~--~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~ 414 (591)
.++..+-.+ +-+.|.. +++..+.. .+. .+..+++++|||||++.+ ....++.
T Consensus 84 ~~~~~p~~~~p~~~t~~~l~G~~---d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl-------------~~~~q~~ 147 (334)
T PRK13407 84 IERPTPVVDLPLGVTEDRVVGAL---DIERALTRGEKAFEPGLLARANRGYLYIDEVNLL-------------EDHIVDL 147 (334)
T ss_pred cccCCccccCCCCCCcceeecch---hhhhhhhcCCeeecCCceEEcCCCeEEecChHhC-------------CHHHHHH
Confidence 011111000 0011110 01111000 000 111245679999999999 6778888
Q ss_pred hcccccCC---------------cEEEEecCChhHHHhhhcccHHHHccCc-ceeecCCCH-HHHHHHHHHH
Q 007723 415 LKPSLGRG---------------ELQCIASTTQDEHRTQFEKDKALARRFQ-PVLISEPSQ-EDAVRILLGL 469 (591)
Q Consensus 415 L~~~le~g---------------~v~lI~att~~e~~~~~~~d~aL~~Rf~-~i~i~~p~~-~e~~~iL~~~ 469 (591)
|+..|+.+ .+++|+++|+.+ ..+.++|.+||. .+.+..|.. ++..+++...
T Consensus 148 Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e----~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~ 215 (334)
T PRK13407 148 LLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEE----GELRPQLLDRFGLSVEVRSPRDVETRVEVIRRR 215 (334)
T ss_pred HHHHHHcCCeEEEECCeEEecCCCEEEEecCCccc----CCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHh
Confidence 88887654 367788878753 247799999998 578888866 7878888653
No 129
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.53 E-value=1.6e-13 Score=145.01 Aligned_cols=196 Identities=15% Similarity=0.170 Sum_probs=131.3
Q ss_pred cccCCCCccCCcHHHHHHHHHHHHhcCCCC-CeEecCCCCcHHHHHHHHHHHHHhCCCCc-c--------c---cCc---
Q 007723 284 ASEELIDPVIGRETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPV-F--------L---LSK--- 347 (591)
Q Consensus 284 ~r~~~~~~vvG~~~~i~~l~~~L~~~~~~~-ilL~GppGvGKT~la~~lA~~l~~~~~p~-~--------~---~~~--- 347 (591)
.+|..+++++|++..++.|.+.+.+.+.+| +||+||+|+||+++|..+|+.+.+..... . + ..|
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c 92 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVA 92 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHH
Confidence 578999999999999999999999887776 78999999999999999999997643110 0 0 000
Q ss_pred ---------eEEEeehhhhhccccccc-hHHHHHHHHHHHHH----hcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHH
Q 007723 348 ---------RIMSLDMGLLMAGAKERG-ELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISN 413 (591)
Q Consensus 348 ---------~~~~ld~~~l~~g~~~~g-~~~~~i~~i~~~~~----~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n 413 (591)
.++.+....--.+.+... -..+.++.+.+.+. ..++.|++|||+|.+ +...+|
T Consensus 93 ~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m-------------~~~aan 159 (365)
T PRK07471 93 RRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEM-------------NANAAN 159 (365)
T ss_pred HHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhc-------------CHHHHH
Confidence 122221100000000001 11233566555443 246789999999999 778899
Q ss_pred hhcccccCC--cEEEEecCChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHH
Q 007723 414 LLKPSLGRG--ELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVH 491 (591)
Q Consensus 414 ~L~~~le~g--~v~lI~att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~ 491 (591)
.|+..+++. ...+|.+|+... .+.+++++||+.+.+.+|+.++..++|... .....++.+..++.
T Consensus 160 aLLK~LEepp~~~~~IL~t~~~~-----~llpti~SRc~~i~l~~l~~~~i~~~L~~~--------~~~~~~~~~~~l~~ 226 (365)
T PRK07471 160 ALLKVLEEPPARSLFLLVSHAPA-----RLLPTIRSRCRKLRLRPLAPEDVIDALAAA--------GPDLPDDPRAALAA 226 (365)
T ss_pred HHHHHHhcCCCCeEEEEEECCch-----hchHHhhccceEEECCCCCHHHHHHHHHHh--------cccCCHHHHHHHHH
Confidence 999999863 455555554432 356899999999999999999998888542 23345555566777
Q ss_pred HhHHhhhcCCCcHHHHHHHH
Q 007723 492 LSARYISDRYLPDKAIDLVD 511 (591)
Q Consensus 492 ~s~r~i~~~~lp~~ai~lld 511 (591)
++.+. |.+++.+++
T Consensus 227 ~s~Gs------p~~Al~ll~ 240 (365)
T PRK07471 227 LAEGS------VGRALRLAG 240 (365)
T ss_pred HcCCC------HHHHHHHhc
Confidence 76544 444555553
No 130
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.52 E-value=1.8e-13 Score=138.88 Aligned_cols=163 Identities=18% Similarity=0.231 Sum_probs=109.5
Q ss_pred HHHHHHHHhcCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeeh------hhhhcccc-c--cchHHHH
Q 007723 300 QRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM------GLLMAGAK-E--RGELEAR 370 (591)
Q Consensus 300 ~~l~~~L~~~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~------~~l~~g~~-~--~g~~~~~ 370 (591)
+++...+. ...+++|+||||||||++|+.+|+.+ +.+++.+++ ..++.... + .......
T Consensus 12 ~~~l~~l~--~g~~vLL~G~~GtGKT~lA~~la~~l----------g~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~ 79 (262)
T TIGR02640 12 SRALRYLK--SGYPVHLRGPAGTGKTTLAMHVARKR----------DRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQF 79 (262)
T ss_pred HHHHHHHh--cCCeEEEEcCCCCCHHHHHHHHHHHh----------CCCEEEEeCCccCCHHHHhhhhcccchhhHHHHH
Confidence 33444433 45689999999999999999999866 334444432 22221100 0 0000111
Q ss_pred HH---------------HHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCC-------------
Q 007723 371 VT---------------TLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG------------- 422 (591)
Q Consensus 371 i~---------------~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g------------- 422 (591)
+. ..+-.+. ..+.+|+|||++.+ ..++++.|+.+|+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~g~l~~A~-~~g~~lllDEi~r~-------------~~~~q~~Ll~~Le~~~~~i~~~~~~~~~ 145 (262)
T TIGR02640 80 IHNVVKLEDIVRQNWVDNRLTLAV-REGFTLVYDEFTRS-------------KPETNNVLLSVFEEGVLELPGKRGTSRY 145 (262)
T ss_pred HHHhhhhhcccceeecCchHHHHH-HcCCEEEEcchhhC-------------CHHHHHHHHHHhcCCeEEccCCCCCCce
Confidence 10 0111111 23569999999998 677888888877532
Q ss_pred -----cEEEEecCChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhh
Q 007723 423 -----ELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497 (591)
Q Consensus 423 -----~v~lI~att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i 497 (591)
.+++|+|+|+..|....+.+++|.+||..+.+..|+.++..+|+... ..++++.+++++++....-
T Consensus 146 i~~~~~frvIaTsN~~~~~g~~~l~~aL~~R~~~i~i~~P~~~~e~~Il~~~---------~~~~~~~~~~iv~~~~~~R 216 (262)
T TIGR02640 146 VDVHPEFRVIFTSNPVEYAGVHETQDALLDRLITIFMDYPDIDTETAILRAK---------TDVAEDSAATIVRLVREFR 216 (262)
T ss_pred EecCCCCEEEEeeCCccccceecccHHHHhhcEEEECCCCCHHHHHHHHHHh---------hCCCHHHHHHHHHHHHHHH
Confidence 46899999998776666678999999999999999999999998642 2467888888888876543
No 131
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.52 E-value=3.4e-13 Score=140.49 Aligned_cols=174 Identities=16% Similarity=0.210 Sum_probs=122.1
Q ss_pred CCCccCCcHHHHHHHHHHHHhcCCCCC-eEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhccccccch
Q 007723 288 LIDPVIGRETEIQRIIQILCRRTKNNP-ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGE 366 (591)
Q Consensus 288 ~~~~vvG~~~~i~~l~~~L~~~~~~~i-lL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~~~~g~ 366 (591)
+|++++|++..++.+...+..++.+|. +|+||+|+|||++|+.+++.+.+....... ..++.+... .|.. .
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h--~D~~~~~~~---~~~~-i-- 73 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREY--VDIIEFKPI---NKKS-I-- 73 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCC--CCeEEeccc---cCCC-C--
Confidence 588999999999999999988777666 799999999999999999998664322111 122222210 1111 1
Q ss_pred HHHHHHHHHHHHH----hcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccC--CcEEEEecCChhHHHhhhc
Q 007723 367 LEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQCIASTTQDEHRTQFE 440 (591)
Q Consensus 367 ~~~~i~~i~~~~~----~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~--g~v~lI~att~~e~~~~~~ 440 (591)
..+.++.+.+.+. ..+..|++||++|.+ +.+++|.|+..+++ ..+.+|..|+..+ .
T Consensus 74 ~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m-------------~~~a~naLLK~LEepp~~t~~il~~~~~~-----~ 135 (313)
T PRK05564 74 GVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKM-------------TEQAQNAFLKTIEEPPKGVFIILLCENLE-----Q 135 (313)
T ss_pred CHHHHHHHHHHHhcCcccCCceEEEEechhhc-------------CHHHHHHHHHHhcCCCCCeEEEEEeCChH-----h
Confidence 1123556555443 246789999999999 67889999999985 2344454443322 4
Q ss_pred ccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHH
Q 007723 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495 (591)
Q Consensus 441 ~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r 495 (591)
+.+++++||+.+.+..|+.++....|..... .++++.++.++.++.+
T Consensus 136 ll~TI~SRc~~~~~~~~~~~~~~~~l~~~~~--------~~~~~~~~~l~~~~~g 182 (313)
T PRK05564 136 ILDTIKSRCQIYKLNRLSKEEIEKFISYKYN--------DIKEEEKKSAIAFSDG 182 (313)
T ss_pred CcHHHHhhceeeeCCCcCHHHHHHHHHHHhc--------CCCHHHHHHHHHHcCC
Confidence 6689999999999999999998777743211 4677777777777654
No 132
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.52 E-value=2.6e-13 Score=147.00 Aligned_cols=187 Identities=14% Similarity=0.217 Sum_probs=121.6
Q ss_pred CCCccC-CcHHHH--HHHHHHHHh------cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhh
Q 007723 288 LIDPVI-GRETEI--QRIIQILCR------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM 358 (591)
Q Consensus 288 ~~~~vv-G~~~~i--~~l~~~L~~------~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~ 358 (591)
+|+.++ |..... ..+.++... ...++++|+||+|+|||||++++++.+.+. +.++++++...+.
T Consensus 109 tFdnFv~g~~N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~-------~~~v~yi~~~~f~ 181 (445)
T PRK12422 109 TFANFLVTPENDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRES-------GGKILYVRSELFT 181 (445)
T ss_pred cccceeeCCcHHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHc-------CCCEEEeeHHHHH
Confidence 688776 655543 334444321 123568999999999999999999998542 4667777765443
Q ss_pred ccccccchHHH-HHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCCcEEEEecCC-hhHHH
Q 007723 359 AGAKERGELEA-RVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTT-QDEHR 436 (591)
Q Consensus 359 ~g~~~~g~~~~-~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g~v~lI~att-~~e~~ 436 (591)
.. ....+.. ... .+.... ....+|+|||+|.+.+.... ..++...+....+.+..+++++++ +.+
T Consensus 182 ~~--~~~~l~~~~~~-~f~~~~-~~~dvLiIDDiq~l~~k~~~-------qeelf~l~N~l~~~~k~IIlts~~~p~~-- 248 (445)
T PRK12422 182 EH--LVSAIRSGEMQ-RFRQFY-RNVDALFIEDIEVFSGKGAT-------QEEFFHTFNSLHTEGKLIVISSTCAPQD-- 248 (445)
T ss_pred HH--HHHHHhcchHH-HHHHHc-ccCCEEEEcchhhhcCChhh-------HHHHHHHHHHHHHCCCcEEEecCCCHHH--
Confidence 11 0000000 011 111111 23459999999999543222 455666655555566655555544 333
Q ss_pred hhhcccHHHHccCc---ceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhhhc
Q 007723 437 TQFEKDKALARRFQ---PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499 (591)
Q Consensus 437 ~~~~~d~aL~~Rf~---~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i~~ 499 (591)
...+++.|.+||. .+.+.+|+.+++..||+..+... ++.++++++++++....+.++.
T Consensus 249 -l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~----~~~l~~evl~~la~~~~~dir~ 309 (445)
T PRK12422 249 -LKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEAL----SIRIEETALDFLIEALSSNVKS 309 (445)
T ss_pred -HhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHc----CCCCCHHHHHHHHHhcCCCHHH
Confidence 2346799999995 69999999999999998777654 8999999999999988766554
No 133
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.52 E-value=1.9e-13 Score=149.42 Aligned_cols=190 Identities=15% Similarity=0.211 Sum_probs=125.0
Q ss_pred CCCccC-CcHH--HHHHHHHHHHhc--CCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhcccc
Q 007723 288 LIDPVI-GRET--EIQRIIQILCRR--TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAK 362 (591)
Q Consensus 288 ~~~~vv-G~~~--~i~~l~~~L~~~--~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~~ 362 (591)
+|++++ |... ....+..+...+ ..++++|+||+|+|||+|++++++.+.... .+..+++++...+...
T Consensus 120 tfd~fv~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~-----~~~~v~yi~~~~~~~~-- 192 (450)
T PRK00149 120 TFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKN-----PNAKVVYVTSEKFTND-- 192 (450)
T ss_pred cccccccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhC-----CCCeEEEEEHHHHHHH--
Confidence 677755 5443 334444444432 235688999999999999999999986532 1567778877655421
Q ss_pred ccchHHH-HHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCCcEEEEecCChhHHHhhhcc
Q 007723 363 ERGELEA-RVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEK 441 (591)
Q Consensus 363 ~~g~~~~-~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g~v~lI~att~~e~~~~~~~ 441 (591)
....... ....+.+.+. ...+|+|||+|.+.+.... ..++...+....+.+..++|++..++. ....+
T Consensus 193 ~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~~~~-------~~~l~~~~n~l~~~~~~iiits~~~p~--~l~~l 261 (450)
T PRK00149 193 FVNALRNNTMEEFKEKYR--SVDVLLIDDIQFLAGKERT-------QEEFFHTFNALHEAGKQIVLTSDRPPK--ELPGL 261 (450)
T ss_pred HHHHHHcCcHHHHHHHHh--cCCEEEEehhhhhcCCHHH-------HHHHHHHHHHHHHCCCcEEEECCCCHH--HHHHH
Confidence 1111100 1122222222 3459999999999543211 345666666666666666665555432 12236
Q ss_pred cHHHHccCc---ceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhhhc
Q 007723 442 DKALARRFQ---PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499 (591)
Q Consensus 442 d~aL~~Rf~---~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i~~ 499 (591)
++.|.+||. .+.+.+|+.+++.+||+..+... ++.++++++++++..+.+.++.
T Consensus 262 ~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~----~~~l~~e~l~~ia~~~~~~~R~ 318 (450)
T PRK00149 262 EERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEE----GIDLPDEVLEFIAKNITSNVRE 318 (450)
T ss_pred HHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHc----CCCCCHHHHHHHHcCcCCCHHH
Confidence 789999995 59999999999999998877653 8999999999999998776554
No 134
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=1.3e-13 Score=156.95 Aligned_cols=197 Identities=23% Similarity=0.266 Sum_probs=148.8
Q ss_pred ccCCCCccCCcHHHHHHHHHHHHh-------------cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEE
Q 007723 285 SEELIDPVIGRETEIQRIIQILCR-------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMS 351 (591)
Q Consensus 285 r~~~~~~vvG~~~~i~~l~~~L~~-------------~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ 351 (591)
+.-.|+++-|-+..+..|.+++.- ..++++||+||||||||.+|+++|..+..+. ....++.
T Consensus 260 ~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~-----~kisffm 334 (1080)
T KOG0732|consen 260 SSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGN-----RKISFFM 334 (1080)
T ss_pred cccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccc-----cccchhh
Confidence 345788999999999888875432 1346799999999999999999999886543 1223333
Q ss_pred eehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccc----cCCcEEEE
Q 007723 352 LDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL----GRGELQCI 427 (591)
Q Consensus 352 ld~~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~l----e~g~v~lI 427 (591)
-+.++.+ .++.|+.+..++.+|+++++..+.|+|+|||+-|...++.-.- .-...+...|+.+| .+|.+++|
T Consensus 335 rkgaD~l--skwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqE--qih~SIvSTLLaLmdGldsRgqVvvi 410 (1080)
T KOG0732|consen 335 RKGADCL--SKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQE--QIHASIVSTLLALMDGLDSRGQVVVI 410 (1080)
T ss_pred hcCchhh--ccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHH--HhhhhHHHHHHHhccCCCCCCceEEE
Confidence 3333333 4689999999999999999999999999999988766533000 01112334455555 38999999
Q ss_pred ecCChhHHHhhhcccHHHHc--cCcc-eeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhhhc
Q 007723 428 ASTTQDEHRTQFEKDKALAR--RFQP-VLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499 (591)
Q Consensus 428 ~att~~e~~~~~~~d~aL~~--Rf~~-i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i~~ 499 (591)
||||..+ .+|++|+| ||+. +++..|+.+.+.+||.-...++ .-.+....+..+++.+.+|...
T Consensus 411 gATnRpd-----a~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw----~~~i~~~l~~~la~~t~gy~ga 476 (1080)
T KOG0732|consen 411 GATNRPD-----AIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKW----EPPISRELLLWLAEETSGYGGA 476 (1080)
T ss_pred cccCCcc-----ccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCC----CCCCCHHHHHHHHHhccccchH
Confidence 9999975 57899988 8984 9999999999999997666554 5678888999999999888654
No 135
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.51 E-value=4.5e-13 Score=145.39 Aligned_cols=189 Identities=19% Similarity=0.268 Sum_probs=124.3
Q ss_pred CCCccC-CcHHH--HHHHHHHHHhcC-CCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhcccc-
Q 007723 288 LIDPVI-GRETE--IQRIIQILCRRT-KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAK- 362 (591)
Q Consensus 288 ~~~~vv-G~~~~--i~~l~~~L~~~~-~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~~- 362 (591)
+|++++ |.... ...+.++...+. .++++||||+|+|||+|++++++.+.... .+..+++++...++....
T Consensus 103 tFdnFv~g~~n~~a~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~-----~~~~v~yi~~~~f~~~~~~ 177 (440)
T PRK14088 103 TFENFVVGPGNSFAYHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNE-----PDLRVMYITSEKFLNDLVD 177 (440)
T ss_pred cccccccCCchHHHHHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHhC-----CCCeEEEEEHHHHHHHHHH
Confidence 677776 64443 234444444332 36789999999999999999999885422 146778887765542110
Q ss_pred --ccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCCcEEEEecCChhHHHhhhc
Q 007723 363 --ERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFE 440 (591)
Q Consensus 363 --~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g~v~lI~att~~e~~~~~~ 440 (591)
..+. +..+..... ....+|+|||++.+.+.... +.++.+.+....+.+..++|++...+. ..-.
T Consensus 178 ~~~~~~----~~~f~~~~~-~~~dvLlIDDi~~l~~~~~~-------q~elf~~~n~l~~~~k~iIitsd~~p~--~l~~ 243 (440)
T PRK14088 178 SMKEGK----LNEFREKYR-KKVDVLLIDDVQFLIGKTGV-------QTELFHTFNELHDSGKQIVICSDREPQ--KLSE 243 (440)
T ss_pred HHhccc----HHHHHHHHH-hcCCEEEEechhhhcCcHHH-------HHHHHHHHHHHHHcCCeEEEECCCCHH--HHHH
Confidence 0111 112222221 23569999999998543211 345666666666666655555543332 1223
Q ss_pred ccHHHHccCc---ceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhhhc
Q 007723 441 KDKALARRFQ---PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499 (591)
Q Consensus 441 ~d~aL~~Rf~---~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i~~ 499 (591)
+.+.+.+||. .+.+.+|+.+++.+||+..+.. .++.++++++++|++...+.++.
T Consensus 244 l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~----~~~~l~~ev~~~Ia~~~~~~~R~ 301 (440)
T PRK14088 244 FQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEI----EHGELPEEVLNFVAENVDDNLRR 301 (440)
T ss_pred HHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHhccccCHHH
Confidence 5689999997 6899999999999999877664 38999999999999998776554
No 136
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.50 E-value=5e-13 Score=143.03 Aligned_cols=191 Identities=26% Similarity=0.327 Sum_probs=123.2
Q ss_pred cCCcHHHHHHHHHHHHhc----------------CCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehh
Q 007723 292 VIGRETEIQRIIQILCRR----------------TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMG 355 (591)
Q Consensus 292 vvG~~~~i~~l~~~L~~~----------------~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~ 355 (591)
|+||++.++.+...+... ...+++|+||||||||++|+.||..+ +.+++.+|++
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l----------~~pf~~id~~ 142 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL----------DVPFAIADAT 142 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh----------CCCceecchh
Confidence 899999999886655321 24689999999999999999999877 5566777776
Q ss_pred hhhccccccch-HHHHHHHHHHH----HHhcCCeEEEEcCcchhhcCCCCCC-CCCCccHHHHHhhcccccCC-------
Q 007723 356 LLMAGAKERGE-LEARVTTLISE----IQKSGDVILFIDEVHTLIGSGTVGR-GNKGTGLDISNLLKPSLGRG------- 422 (591)
Q Consensus 356 ~l~~g~~~~g~-~~~~i~~i~~~----~~~~~~~ILfIDEi~~L~~~~~~~~-~~~~~~~~~~n~L~~~le~g------- 422 (591)
.+.. ..|.|. .+..+..++.. +.+..++||||||||.+...+.... ..+-+...+|+.|+.+|+..
T Consensus 143 ~l~~-~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~ 221 (412)
T PRK05342 143 TLTE-AGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQ 221 (412)
T ss_pred hccc-CCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCC
Confidence 5432 234443 33334444332 2345788999999999965421100 11122346788888888521
Q ss_pred --------cEEEEecCCh--------h-------------------------------HHHh--------hhcccHHHHc
Q 007723 423 --------ELQCIASTTQ--------D-------------------------------EHRT--------QFEKDKALAR 447 (591)
Q Consensus 423 --------~v~lI~att~--------~-------------------------------e~~~--------~~~~d~aL~~ 447 (591)
.+++|.|+|. . .+.. .+.+.|.|..
T Consensus 222 gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflg 301 (412)
T PRK05342 222 GGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIG 301 (412)
T ss_pred CCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhC
Confidence 1223333332 0 0000 0124688999
Q ss_pred cCc-ceeecCCCHHHHHHHHHH----HHHHHH---hhc--CCCCcHHHHHHHHHHh
Q 007723 448 RFQ-PVLISEPSQEDAVRILLG----LREKYE---AHH--NCKFTLEAINAAVHLS 493 (591)
Q Consensus 448 Rf~-~i~i~~p~~~e~~~iL~~----~~~~~~---~~~--~i~i~~~al~~l~~~s 493 (591)
|+. ++.+.+++.+++..|+.. +..+|. ..+ .+.++++++++|++.+
T Consensus 302 Rld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~ 357 (412)
T PRK05342 302 RLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKA 357 (412)
T ss_pred CCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhC
Confidence 998 578889999999999973 444443 223 4578999999999875
No 137
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.50 E-value=3.7e-13 Score=145.28 Aligned_cols=190 Identities=15% Similarity=0.225 Sum_probs=121.7
Q ss_pred CCCcc-CCcHHHH--HHHHHHHHhcC--CCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhcccc
Q 007723 288 LIDPV-IGRETEI--QRIIQILCRRT--KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAK 362 (591)
Q Consensus 288 ~~~~v-vG~~~~i--~~l~~~L~~~~--~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~~ 362 (591)
+|+++ +|.+... ..+..+..... .++++|+||+|+|||+|++++++.+.... .+..+++++...+....
T Consensus 108 tfd~fi~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~-----~~~~v~yi~~~~~~~~~- 181 (405)
T TIGR00362 108 TFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILENN-----PNAKVVYVSSEKFTNDF- 181 (405)
T ss_pred cccccccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHHHHHhC-----CCCcEEEEEHHHHHHHH-
Confidence 67774 4655532 23333333322 34678999999999999999999986531 14667777766543210
Q ss_pred ccchHH-HHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCCcEEEEecCChhHHHhhhcc
Q 007723 363 ERGELE-ARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEK 441 (591)
Q Consensus 363 ~~g~~~-~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g~v~lI~att~~e~~~~~~~ 441 (591)
...+. ..+..+.+.+. ...+|+|||+|.+.+.... ..++.+.+....+.+..++|++...+. ....+
T Consensus 182 -~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~~~~-------~~~l~~~~n~~~~~~~~iiits~~~p~--~l~~l 249 (405)
T TIGR00362 182 -VNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAGKERT-------QEEFFHTFNALHENGKQIVLTSDRPPK--ELPGL 249 (405)
T ss_pred -HHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcCCHHH-------HHHHHHHHHHHHHCCCCEEEecCCCHH--HHhhh
Confidence 00000 01122222232 2359999999998543211 344556665555666555555443322 12336
Q ss_pred cHHHHccCc---ceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhhhc
Q 007723 442 DKALARRFQ---PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499 (591)
Q Consensus 442 d~aL~~Rf~---~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i~~ 499 (591)
++.|.+||. .+.+.+|+.+++..||+..+... ++.+++++++++++...+.++.
T Consensus 250 ~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~----~~~l~~e~l~~ia~~~~~~~r~ 306 (405)
T TIGR00362 250 EERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEE----GLELPDEVLEFIAKNIRSNVRE 306 (405)
T ss_pred hhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHc----CCCCCHHHHHHHHHhcCCCHHH
Confidence 789999996 59999999999999998877654 8999999999999988766554
No 138
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.50 E-value=3.7e-13 Score=135.90 Aligned_cols=115 Identities=19% Similarity=0.215 Sum_probs=88.4
Q ss_pred CeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCC-cEEEEecCChh-------HHHhhhcccHHHHccCcceee
Q 007723 383 DVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-ELQCIASTTQD-------EHRTQFEKDKALARRFQPVLI 454 (591)
Q Consensus 383 ~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g-~v~lI~att~~-------e~~~~~~~d~aL~~Rf~~i~i 454 (591)
++||||||+|+| ..+.+..|...|+.. .-++|.|||.. ++.....+...|.+|+-+|..
T Consensus 292 pGVLFIDEvHmL-------------DIE~FsFlnrAlEse~aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLDRllII~t 358 (450)
T COG1224 292 PGVLFIDEVHML-------------DIECFSFLNRALESELAPIIILATNRGMTKIRGTDIESPHGIPLDLLDRLLIIST 358 (450)
T ss_pred cceEEEechhhh-------------hHHHHHHHHHHhhcccCcEEEEEcCCceeeecccCCcCCCCCCHhhhhheeEEec
Confidence 789999999999 888999999998753 34566666643 122345577899999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHH-hhhcCCCcHHHHHHHHHHhhHhhhh
Q 007723 455 SEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR-YISDRYLPDKAIDLVDEAGSRAHIE 520 (591)
Q Consensus 455 ~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r-~i~~~~lp~~ai~lld~a~a~~~~~ 520 (591)
.+++.+++.+||+..+... ++.+++++++++...... .++ -+++||.-|...+..+
T Consensus 359 ~py~~~EireIi~iRa~ee----~i~l~~~Ale~L~~ig~etSLR------Ya~qLL~pa~iiA~~r 415 (450)
T COG1224 359 RPYSREEIREIIRIRAKEE----DIELSDDALEYLTDIGEETSLR------YAVQLLTPASIIAKRR 415 (450)
T ss_pred CCCCHHHHHHHHHHhhhhh----ccccCHHHHHHHHhhchhhhHH------HHHHhccHHHHHHHHh
Confidence 9999999999998777655 899999999999988642 222 2788887665444444
No 139
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.49 E-value=5.6e-13 Score=146.87 Aligned_cols=189 Identities=14% Similarity=0.170 Sum_probs=124.9
Q ss_pred CCCccC-CcHHH--HHHHHHHHHhc--CCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhcccc
Q 007723 288 LIDPVI-GRETE--IQRIIQILCRR--TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAK 362 (591)
Q Consensus 288 ~~~~vv-G~~~~--i~~l~~~L~~~--~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~~ 362 (591)
+|++|+ |.... ...+..++... ..+.++|||++|+|||+|++++++.+... ..+.++++++...++...
T Consensus 286 TFDnFvvG~sN~~A~aaa~avae~~~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~-----~~g~~V~Yitaeef~~el- 359 (617)
T PRK14086 286 TFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRL-----YPGTRVRYVSSEEFTNEF- 359 (617)
T ss_pred CHhhhcCCCccHHHHHHHHHHHhCccccCCcEEEECCCCCCHHHHHHHHHHHHHHh-----CCCCeEEEeeHHHHHHHH-
Confidence 677766 44443 22344444432 23558899999999999999999988542 125678888876654221
Q ss_pred ccchHHH-HHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCCcEEEEecCCh-hHHHhhhc
Q 007723 363 ERGELEA-RVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQ-DEHRTQFE 440 (591)
Q Consensus 363 ~~g~~~~-~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g~v~lI~att~-~e~~~~~~ 440 (591)
...+.. .+..+.+.+. ...+|+||||+.+.++..+ ..++++++....+.+..++|.+... .+ ...
T Consensus 360 -~~al~~~~~~~f~~~y~--~~DLLlIDDIq~l~gke~t-------qeeLF~l~N~l~e~gk~IIITSd~~P~e---L~~ 426 (617)
T PRK14086 360 -INSIRDGKGDSFRRRYR--EMDILLVDDIQFLEDKEST-------QEEFFHTFNTLHNANKQIVLSSDRPPKQ---LVT 426 (617)
T ss_pred -HHHHHhccHHHHHHHhh--cCCEEEEehhccccCCHHH-------HHHHHHHHHHHHhcCCCEEEecCCChHh---hhh
Confidence 000000 1112222222 2459999999999544322 5567777777777665544543332 32 234
Q ss_pred ccHHHHccCc---ceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhhhc
Q 007723 441 KDKALARRFQ---PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499 (591)
Q Consensus 441 ~d~aL~~Rf~---~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i~~ 499 (591)
+++.|.+||. .+.|..|+.+.+.+||+..+... ++.++++++++|+....+.++.
T Consensus 427 l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r----~l~l~~eVi~yLa~r~~rnvR~ 484 (617)
T PRK14086 427 LEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQE----QLNAPPEVLEFIASRISRNIRE 484 (617)
T ss_pred ccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhc----CCCCCHHHHHHHHHhccCCHHH
Confidence 6799999996 58999999999999998776654 8999999999999998776655
No 140
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.48 E-value=2.3e-13 Score=141.87 Aligned_cols=160 Identities=21% Similarity=0.309 Sum_probs=102.4
Q ss_pred CCccCCcHHHHHHHHHHHHhcCCCCCeEecCCCCcHHHHHHHHHHHHHhCC----CCcc---------ccCceEE-----
Q 007723 289 IDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAE----VPVF---------LLSKRIM----- 350 (591)
Q Consensus 289 ~~~vvG~~~~i~~l~~~L~~~~~~~ilL~GppGvGKT~la~~lA~~l~~~~----~p~~---------~~~~~~~----- 350 (591)
|..++||++.+..+.-.+-.+...+++|.|++|+|||+++++++..+.... .|.. ..+|+..
T Consensus 3 f~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 82 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCEEVRIRVDSQE 82 (337)
T ss_pred ccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccChHHhhhhhccc
Confidence 678999999999887777667788999999999999999999998873210 1110 0011110
Q ss_pred ----------Eeehhh-----hhccccccchHHHHHHH---HHH--HHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHH
Q 007723 351 ----------SLDMGL-----LMAGAKERGELEARVTT---LIS--EIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLD 410 (591)
Q Consensus 351 ----------~ld~~~-----l~~g~~~~g~~~~~i~~---i~~--~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~ 410 (591)
..|+.. -+.|.. +++..++. .+. -+.++++++|||||++.+ ...
T Consensus 83 ~~~~~~~~~~~~~lP~~~t~d~l~G~~---d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L-------------~~~ 146 (337)
T TIGR02030 83 PLSIIKKPVPVVDLPLGATEDRVCGTL---DIERALTEGVKAFEPGLLARANRGILYIDEVNLL-------------EDH 146 (337)
T ss_pred ccccccCCCCcCCCCCCCcccceecch---hHhhHhhcCCEEeecCcceeccCCEEEecChHhC-------------CHH
Confidence 011111 011111 11111100 000 112356789999999999 667
Q ss_pred HHHhhcccccCC---------------cEEEEecCChhHHHhhhcccHHHHccCc-ceeecCCCH-HHHHHHHHH
Q 007723 411 ISNLLKPSLGRG---------------ELQCIASTTQDEHRTQFEKDKALARRFQ-PVLISEPSQ-EDAVRILLG 468 (591)
Q Consensus 411 ~~n~L~~~le~g---------------~v~lI~att~~e~~~~~~~d~aL~~Rf~-~i~i~~p~~-~e~~~iL~~ 468 (591)
+++.|+..|+.+ .+++|+++++.+ ..+.++|.+||. .+.+..|.. ++..+|++.
T Consensus 147 ~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~e----g~l~~~LldRf~l~i~l~~p~~~eer~eIL~~ 217 (337)
T TIGR02030 147 LVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEE----GELRPQLLDRFGLHAEIRTVRDVELRVEIVER 217 (337)
T ss_pred HHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEecccccc----CCCCHHHHhhcceEEECCCCCCHHHHHHHHHh
Confidence 888888777544 357777777653 347799999998 478888865 777888865
No 141
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=6.3e-13 Score=145.11 Aligned_cols=197 Identities=20% Similarity=0.272 Sum_probs=136.9
Q ss_pred ccCCcHHHHHHHHHHHHhc-----C-CCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhh-----c
Q 007723 291 PVIGRETEIQRIIQILCRR-----T-KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM-----A 359 (591)
Q Consensus 291 ~vvG~~~~i~~l~~~L~~~-----~-~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~-----~ 359 (591)
+=.|-++..+++++.|.-. . ++-++|+||||||||+|++.||+.+ ++.|+.+.++.+. -
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al----------~RkfvR~sLGGvrDEAEIR 393 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL----------GRKFVRISLGGVRDEAEIR 393 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh----------CCCEEEEecCccccHHHhc
Confidence 4588999999999876432 1 2345799999999999999999998 6778877766443 2
Q ss_pred cc--cccchHHHHHHHHHHHHHh--cCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccC--------------
Q 007723 360 GA--KERGELEARVTTLISEIQK--SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR-------------- 421 (591)
Q Consensus 360 g~--~~~g~~~~~i~~i~~~~~~--~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~-------------- 421 (591)
|. .|.|..-.+ +++.+++ ..+.+++|||||.+... ...+-+.+|+.+|..
T Consensus 394 GHRRTYIGamPGr---IiQ~mkka~~~NPv~LLDEIDKm~ss---------~rGDPaSALLEVLDPEQN~~F~DhYLev~ 461 (782)
T COG0466 394 GHRRTYIGAMPGK---IIQGMKKAGVKNPVFLLDEIDKMGSS---------FRGDPASALLEVLDPEQNNTFSDHYLEVP 461 (782)
T ss_pred cccccccccCChH---HHHHHHHhCCcCCeEEeechhhccCC---------CCCChHHHHHhhcCHhhcCchhhccccCc
Confidence 21 133433333 3333433 24568889999999322 122345566665531
Q ss_pred ---CcEEEEecCChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHH-HHHHHhhcC-----CCCcHHHHHHHHHH
Q 007723 422 ---GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGL-REKYEAHHN-----CKFTLEAINAAVHL 492 (591)
Q Consensus 422 ---g~v~lI~att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~-~~~~~~~~~-----i~i~~~al~~l~~~ 492 (591)
.+|++|+|.|.- ..+..+|++|..+|++..++.++-.+|.+.+ ..+..+.|+ +.|+|+++..++++
T Consensus 462 yDLS~VmFiaTANsl-----~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~ 536 (782)
T COG0466 462 YDLSKVMFIATANSL-----DTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRY 536 (782)
T ss_pred cchhheEEEeecCcc-----ccCChHHhcceeeeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHH
Confidence 257888888763 3478999999999999999999999998774 444444554 57999999999988
Q ss_pred hHHhhhcCCCcHHHHHHHHHHh
Q 007723 493 SARYISDRYLPDKAIDLVDEAG 514 (591)
Q Consensus 493 s~r~i~~~~lp~~ai~lld~a~ 514 (591)
-.|...-|.+-+..-.++..++
T Consensus 537 YTREAGVR~LeR~i~ki~RK~~ 558 (782)
T COG0466 537 YTREAGVRNLEREIAKICRKAA 558 (782)
T ss_pred HhHhhhhhHHHHHHHHHHHHHH
Confidence 7777666665444445555444
No 142
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.46 E-value=6.4e-13 Score=144.37 Aligned_cols=193 Identities=17% Similarity=0.172 Sum_probs=123.5
Q ss_pred CCCCccC-CcHH--HHHHHHHHHHhc--CCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhccc
Q 007723 287 ELIDPVI-GRET--EIQRIIQILCRR--TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGA 361 (591)
Q Consensus 287 ~~~~~vv-G~~~--~i~~l~~~L~~~--~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~ 361 (591)
-+|+.++ |... ....+..+.... ..++++|+|++|+|||+|++++++.+.... .+.++++++...+....
T Consensus 112 ~tFdnFv~g~~n~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~-----~~~~v~yv~~~~f~~~~ 186 (450)
T PRK14087 112 NTFENFVIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNF-----SDLKVSYMSGDEFARKA 186 (450)
T ss_pred cchhcccCCCcHHHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHHHHhC-----CCCeEEEEEHHHHHHHH
Confidence 4788776 5433 233344443322 235678999999999999999999875421 25677788776654221
Q ss_pred cccchHH---HHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCCcEEEEecCChhHHHhh
Q 007723 362 KERGELE---ARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ 438 (591)
Q Consensus 362 ~~~g~~~---~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g~v~lI~att~~e~~~~ 438 (591)
. ..+. ..+..+...+ ....+|+|||+|.+.+...+ ...+++.+....+.+..++|.+..++. ..
T Consensus 187 ~--~~l~~~~~~~~~~~~~~--~~~dvLiIDDiq~l~~k~~~-------~e~lf~l~N~~~~~~k~iIltsd~~P~--~l 253 (450)
T PRK14087 187 V--DILQKTHKEIEQFKNEI--CQNDVLIIDDVQFLSYKEKT-------NEIFFTIFNNFIENDKQLFFSSDKSPE--LL 253 (450)
T ss_pred H--HHHHHhhhHHHHHHHHh--ccCCEEEEeccccccCCHHH-------HHHHHHHHHHHHHcCCcEEEECCCCHH--HH
Confidence 1 1111 1122222222 23459999999999433221 445666666666666644444433332 12
Q ss_pred hcccHHHHccCc---ceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhhhc
Q 007723 439 FEKDKALARRFQ---PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499 (591)
Q Consensus 439 ~~~d~aL~~Rf~---~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i~~ 499 (591)
-.+++.|.+||. .+.+.+|+.+++.+||+..+... ...+.++++++++|+..+.+.++.
T Consensus 254 ~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~--gl~~~l~~evl~~Ia~~~~gd~R~ 315 (450)
T PRK14087 254 NGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQ--NIKQEVTEEAINFISNYYSDDVRK 315 (450)
T ss_pred hhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhc--CCCCCCCHHHHHHHHHccCCCHHH
Confidence 346799999997 58999999999999998877643 112479999999999998876544
No 143
>PRK04132 replication factor C small subunit; Provisional
Probab=99.46 E-value=7.8e-13 Score=151.09 Aligned_cols=211 Identities=14% Similarity=0.202 Sum_probs=151.0
Q ss_pred eEec--CCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhccccccchHHHHHHHHHHHHHhc------CCeEE
Q 007723 315 ILLG--ESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKS------GDVIL 386 (591)
Q Consensus 315 lL~G--ppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~~~------~~~IL 386 (591)
+..| |.+.||||+|++||+.+...+ .+..++++|+++. +| .+.++.+++.+... +..|+
T Consensus 568 ~~~G~lPh~lGKTT~A~ala~~l~g~~-----~~~~~lElNASd~------rg--id~IR~iIk~~a~~~~~~~~~~KVv 634 (846)
T PRK04132 568 FIGGNLPTVLHNTTAALALARELFGEN-----WRHNFLELNASDE------RG--INVIREKVKEFARTKPIGGASFKII 634 (846)
T ss_pred hhcCCCCCcccHHHHHHHHHHhhhccc-----ccCeEEEEeCCCc------cc--HHHHHHHHHHHHhcCCcCCCCCEEE
Confidence 4568 999999999999999884321 2457888887642 11 11355555544321 24799
Q ss_pred EEcCcchhhcCCCCCCCCCCccHHHHHhhcccccC--CcEEEEecCChhHHHhhhcccHHHHccCcceeecCCCHHHHHH
Q 007723 387 FIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVR 464 (591)
Q Consensus 387 fIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~--g~v~lI~att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~ 464 (591)
||||+|.| +.+++|.|+..|+. +.+.+|++||... .+.++|+|||+.+.|.+|+.+++..
T Consensus 635 IIDEaD~L-------------t~~AQnALLk~lEep~~~~~FILi~N~~~-----kIi~tIrSRC~~i~F~~ls~~~i~~ 696 (846)
T PRK04132 635 FLDEADAL-------------TQDAQQALRRTMEMFSSNVRFILSCNYSS-----KIIEPIQSRCAIFRFRPLRDEDIAK 696 (846)
T ss_pred EEECcccC-------------CHHHHHHHHHHhhCCCCCeEEEEEeCChh-----hCchHHhhhceEEeCCCCCHHHHHH
Confidence 99999999 67889999999994 7888999888753 4668999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhhhcCCCcHHHHHHHHHHhhHhhhhhhccchhhhhhhhcCCh-HHHHHH
Q 007723 465 ILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPP-DDYWQE 543 (591)
Q Consensus 465 iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i~~~~lp~~ai~lld~a~a~~~~~~~~~~~~~~i~~l~~~~-~~~~~~ 543 (591)
+|..++.+. ++.++++++..++..+++.++ +|+.+|+.+++.. .....+.+..+...+ .....+
T Consensus 697 ~L~~I~~~E----gi~i~~e~L~~Ia~~s~GDlR------~AIn~Lq~~~~~~-----~~It~~~V~~~~~~~~~~~I~~ 761 (846)
T PRK04132 697 RLRYIAENE----GLELTEEGLQAILYIAEGDMR------RAINILQAAAALD-----DKITDENVFLVASRARPEDIRE 761 (846)
T ss_pred HHHHHHHhc----CCCCCHHHHHHHHHHcCCCHH------HHHHHHHHHHHhc-----CCCCHHHHHHHhCCCCHHHHHH
Confidence 998887754 899999999999999988755 4999998776421 112223344433332 234555
Q ss_pred HHHHhhcchHHHHhhchhhHh-hhccCCC
Q 007723 544 IRTVQAMHEVVQGSRLKYDDV-VASMGDT 571 (591)
Q Consensus 544 ~~~~~~~~d~~~a~~~~~~~~-~~~~~~~ 571 (591)
....+..+++.++.....+.- +.+.+..
T Consensus 762 il~~~l~~~~~~ar~~l~ell~~~G~~~~ 790 (846)
T PRK04132 762 MMLLALKGNFLKAREKLREILLKQGLSGE 790 (846)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHhCCCHH
Confidence 556667777888877655543 4444443
No 144
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.46 E-value=5.2e-13 Score=153.51 Aligned_cols=185 Identities=17% Similarity=0.231 Sum_probs=122.4
Q ss_pred ccCCcHHHHHHHHHHHHh------cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhh-----c
Q 007723 291 PVIGRETEIQRIIQILCR------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM-----A 359 (591)
Q Consensus 291 ~vvG~~~~i~~l~~~L~~------~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~-----~ 359 (591)
+.+|.++..+++++.+.- .....++|+||||+|||++++.++..+ +..++.++++... .
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l----------~~~~~~i~~~~~~d~~~i~ 392 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT----------GRKYVRMALGGVRDEAEIR 392 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEEcCCCCCHHHhc
Confidence 489999999999887653 234567899999999999999999987 3445555443321 1
Q ss_pred cc--cccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccC----------------
Q 007723 360 GA--KERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR---------------- 421 (591)
Q Consensus 360 g~--~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~---------------- 421 (591)
|. .+.|.....+...+.... ..+.|++|||+|.+.... ..+.++.|+++++.
T Consensus 393 g~~~~~~g~~~G~~~~~l~~~~-~~~~villDEidk~~~~~---------~g~~~~aLlevld~~~~~~~~d~~~~~~~d 462 (784)
T PRK10787 393 GHRRTYIGSMPGKLIQKMAKVG-VKNPLFLLDEIDKMSSDM---------RGDPASALLEVLDPEQNVAFSDHYLEVDYD 462 (784)
T ss_pred cchhccCCCCCcHHHHHHHhcC-CCCCEEEEEChhhccccc---------CCCHHHHHHHHhccccEEEEeccccccccc
Confidence 11 122222222222222221 235589999999994321 12345566666543
Q ss_pred -CcEEEEecCChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHH-HHHhh-----cCCCCcHHHHHHHHHHhH
Q 007723 422 -GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLRE-KYEAH-----HNCKFTLEAINAAVHLSA 494 (591)
Q Consensus 422 -g~v~lI~att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~-~~~~~-----~~i~i~~~al~~l~~~s~ 494 (591)
+++.+|+|+|. +.++++|++||.+|.+..++.++..+|.+..+. +.... ..+.+++++++.+++...
T Consensus 463 ls~v~~i~TaN~------~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt 536 (784)
T PRK10787 463 LSDVMFVATSNS------MNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYT 536 (784)
T ss_pred CCceEEEEcCCC------CCCCHHHhcceeeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCC
Confidence 56788886654 358999999999999999999999999988653 32222 246799999999997444
Q ss_pred HhhhcCC
Q 007723 495 RYISDRY 501 (591)
Q Consensus 495 r~i~~~~ 501 (591)
+....|.
T Consensus 537 ~e~GaR~ 543 (784)
T PRK10787 537 REAGVRS 543 (784)
T ss_pred cccCCcH
Confidence 4334443
No 145
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.46 E-value=9.4e-13 Score=136.53 Aligned_cols=194 Identities=16% Similarity=0.202 Sum_probs=126.1
Q ss_pred CCCccCCcHHHHHHHHHHHHhcCC-CCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCc--------eEEEeehhhhh
Q 007723 288 LIDPVIGRETEIQRIIQILCRRTK-NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSK--------RIMSLDMGLLM 358 (591)
Q Consensus 288 ~~~~vvG~~~~i~~l~~~L~~~~~-~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~--------~~~~ld~~~l~ 358 (591)
.|++++||+..++.+...+...+. +..||+||+|+||+++|.++|+.+.+.........+ .++.+......
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~ 81 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQH 81 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccc
Confidence 578999999999999999988764 667899999999999999999998765421111111 12222211101
Q ss_pred cccc-------ccc-------h-HHHHHHHHHHHHHh----cCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccc
Q 007723 359 AGAK-------ERG-------E-LEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL 419 (591)
Q Consensus 359 ~g~~-------~~g-------~-~~~~i~~i~~~~~~----~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~l 419 (591)
.|.. ..| . ..+.++.+.+.+.. ++..|++||++|.| +...+|.|+..|
T Consensus 82 ~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m-------------~~~aaNaLLK~L 148 (314)
T PRK07399 82 QGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETM-------------NEAAANALLKTL 148 (314)
T ss_pred cccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhc-------------CHHHHHHHHHHH
Confidence 1100 000 0 11235566555432 56789999999999 678899999999
Q ss_pred cC-CcEEEEecCChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhhh
Q 007723 420 GR-GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498 (591)
Q Consensus 420 e~-g~v~lI~att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i~ 498 (591)
|+ ++..+|..++..+ .+-++++|||+.+.|.+++.++..++|....... +. +..+..++.++.+.
T Consensus 149 EEPp~~~fILi~~~~~-----~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~----~~---~~~~~~l~~~a~Gs-- 214 (314)
T PRK07399 149 EEPGNGTLILIAPSPE-----SLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEE----IL---NINFPELLALAQGS-- 214 (314)
T ss_pred hCCCCCeEEEEECChH-----hCcHHHHhhceEEecCCCCHHHHHHHHHHhhccc----cc---hhHHHHHHHHcCCC--
Confidence 83 2344555554332 4669999999999999999999999987643211 11 11234555555443
Q ss_pred cCCCcHHHHHHHHH
Q 007723 499 DRYLPDKAIDLVDE 512 (591)
Q Consensus 499 ~~~lp~~ai~lld~ 512 (591)
|.+|+++++.
T Consensus 215 ----~~~al~~l~~ 224 (314)
T PRK07399 215 ----PGAAIANIEQ 224 (314)
T ss_pred ----HHHHHHHHHH
Confidence 5556666643
No 146
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=2.4e-13 Score=134.94 Aligned_cols=170 Identities=21% Similarity=0.288 Sum_probs=130.2
Q ss_pred ccCCCCccCCcHHHHHHHHHHHHh-------------cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEE
Q 007723 285 SEELIDPVIGRETEIQRIIQILCR-------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMS 351 (591)
Q Consensus 285 r~~~~~~vvG~~~~i~~l~~~L~~-------------~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ 351 (591)
+.-+|+.+-|--..+..+.+.+.- ..+..++||||||+|||.++++++..+ ++.++.
T Consensus 127 ~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~m----------g~nfl~ 196 (388)
T KOG0651|consen 127 RNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATM----------GVNFLK 196 (388)
T ss_pred cccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhc----------CCceEE
Confidence 334888999988888888876432 123456899999999999999999988 777888
Q ss_pred eehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhccccc-------CCcE
Q 007723 352 LDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG-------RGEL 424 (591)
Q Consensus 352 ld~~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le-------~g~v 424 (591)
+..+++.. ++.|+....+++.+..+.+..++|||+||||.+.+...+ ++. ...++++..|..++. -+.+
T Consensus 197 v~ss~lv~--kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~s-e~T-s~dreiqrTLMeLlnqmdgfd~l~rV 272 (388)
T KOG0651|consen 197 VVSSALVD--KYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFS-EGT-SSDREIQRTLMELLNQMDGFDTLHRV 272 (388)
T ss_pred eeHhhhhh--hhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEec-ccc-chhHHHHHHHHHHHHhhccchhcccc
Confidence 88888874 588999999999999999988999999999998765422 221 234555555544442 4679
Q ss_pred EEEecCChhHHHhhhcccHHHHc--cCc-ceeecCCCHHHHHHHHHHHHHHH
Q 007723 425 QCIASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKY 473 (591)
Q Consensus 425 ~lI~att~~e~~~~~~~d~aL~~--Rf~-~i~i~~p~~~e~~~iL~~~~~~~ 473 (591)
.+|+|||... -++|+|.| |++ .+.++.|+...+..|++-.....
T Consensus 273 k~ImatNrpd-----tLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i 319 (388)
T KOG0651|consen 273 KTIMATNRPD-----TLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPI 319 (388)
T ss_pred cEEEecCCcc-----ccchhhcCCccccceeccCCcchhhceeeEeeccccc
Confidence 9999999864 58899998 887 48899999988888776544433
No 147
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.44 E-value=3.8e-12 Score=147.98 Aligned_cols=182 Identities=17% Similarity=0.222 Sum_probs=127.9
Q ss_pred ccCCcHHHHHHHHHHHHhc-------CC--CCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhc--
Q 007723 291 PVIGRETEIQRIIQILCRR-------TK--NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA-- 359 (591)
Q Consensus 291 ~vvG~~~~i~~l~~~L~~~-------~~--~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~-- 359 (591)
.|+||+..+..+.+.+.+. .+ ..++|+||+|||||.+|++||..+..+ ...++.+|++.+..
T Consensus 567 ~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~-------~~~~~~~dmse~~~~~ 639 (852)
T TIGR03345 567 RVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGG-------EQNLITINMSEFQEAH 639 (852)
T ss_pred eEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCC-------CcceEEEeHHHhhhhh
Confidence 4899999999998887542 11 236899999999999999999998542 34677888876531
Q ss_pred ------cc--cccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCC---------
Q 007723 360 ------GA--KERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG--------- 422 (591)
Q Consensus 360 ------g~--~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g--------- 422 (591)
|. .|.|.-+. ..+.+.+++.+..||+||||+.+ ..++++.|+++++.|
T Consensus 640 ~~~~l~g~~~gyvg~~~~--g~L~~~v~~~p~svvllDEieka-------------~~~v~~~Llq~ld~g~l~d~~Gr~ 704 (852)
T TIGR03345 640 TVSRLKGSPPGYVGYGEG--GVLTEAVRRKPYSVVLLDEVEKA-------------HPDVLELFYQVFDKGVMEDGEGRE 704 (852)
T ss_pred hhccccCCCCCccccccc--chHHHHHHhCCCcEEEEechhhc-------------CHHHHHHHHHHhhcceeecCCCcE
Confidence 21 12221111 11233445577889999999987 678899999888754
Q ss_pred ----cEEEEecCChhH--H----------------Hhh------hcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHH
Q 007723 423 ----ELQCIASTTQDE--H----------------RTQ------FEKDKALARRFQPVLISEPSQEDAVRILLGLREKYE 474 (591)
Q Consensus 423 ----~v~lI~att~~e--~----------------~~~------~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~ 474 (591)
+.++|.++|... + ... -...|+|.+|+++|.|.+++.+++.+|+......+.
T Consensus 705 vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~iI~F~pLs~e~l~~Iv~~~L~~l~ 784 (852)
T TIGR03345 705 IDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMTVIPYLPLDDDVLAAIVRLKLDRIA 784 (852)
T ss_pred EeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhcceeEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 356777766311 0 000 014588999999999999999999999988655432
Q ss_pred ----hh--cCCCCcHHHHHHHHHHhH
Q 007723 475 ----AH--HNCKFTLEAINAAVHLSA 494 (591)
Q Consensus 475 ----~~--~~i~i~~~al~~l~~~s~ 494 (591)
.. ..+.+++++++++++.+.
T Consensus 785 ~rl~~~~gi~l~i~d~a~~~La~~g~ 810 (852)
T TIGR03345 785 RRLKENHGAELVYSEALVEHIVARCT 810 (852)
T ss_pred HHHHHhcCceEEECHHHHHHHHHHcC
Confidence 22 235789999999998874
No 148
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=2e-12 Score=140.39 Aligned_cols=184 Identities=22% Similarity=0.273 Sum_probs=125.6
Q ss_pred ccCCcHHHHHHHHHHHHhcC------CCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhc-----
Q 007723 291 PVIGRETEIQRIIQILCRRT------KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA----- 359 (591)
Q Consensus 291 ~vvG~~~~i~~l~~~L~~~~------~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~----- 359 (591)
+=+|.++..+++++.+.-+. +.-++|+||||||||++++.||+.+ +..|+.+.++.+..
T Consensus 412 DHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~AL----------nRkFfRfSvGG~tDvAeIk 481 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARAL----------NRKFFRFSVGGMTDVAEIK 481 (906)
T ss_pred cccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHh----------CCceEEEeccccccHHhhc
Confidence 56889999999999765322 2335799999999999999999999 67777777665432
Q ss_pred cc--cccchHHHHHHHHHHHHHh--cCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccC--------------
Q 007723 360 GA--KERGELEARVTTLISEIQK--SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR-------------- 421 (591)
Q Consensus 360 g~--~~~g~~~~~i~~i~~~~~~--~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~-------------- 421 (591)
|. .|.|..-.+ +++.+++ ..+.+++|||||.+- .|. +.+-..+|+.+|..
T Consensus 482 GHRRTYVGAMPGk---iIq~LK~v~t~NPliLiDEvDKlG-~g~--------qGDPasALLElLDPEQNanFlDHYLdVp 549 (906)
T KOG2004|consen 482 GHRRTYVGAMPGK---IIQCLKKVKTENPLILIDEVDKLG-SGH--------QGDPASALLELLDPEQNANFLDHYLDVP 549 (906)
T ss_pred ccceeeeccCChH---HHHHHHhhCCCCceEEeehhhhhC-CCC--------CCChHHHHHHhcChhhccchhhhccccc
Confidence 21 133433333 3344433 245688889999992 222 22334455555531
Q ss_pred ---CcEEEEecCChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHH-HHHHhhcC-----CCCcHHHHHHHHHH
Q 007723 422 ---GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLR-EKYEAHHN-----CKFTLEAINAAVHL 492 (591)
Q Consensus 422 ---g~v~lI~att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~-~~~~~~~~-----i~i~~~al~~l~~~ 492 (591)
.++.+||+.|.- -.+.++|++|..+|.+..+..++-+.|.+.++ .+....++ ++|+++++..+++.
T Consensus 550 ~DLSkVLFicTAN~i-----dtIP~pLlDRMEvIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~ 624 (906)
T KOG2004|consen 550 VDLSKVLFICTANVI-----DTIPPPLLDRMEVIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIER 624 (906)
T ss_pred cchhheEEEEecccc-----ccCChhhhhhhheeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHH
Confidence 257888888774 35779999999999999999999999987743 33333444 57888888888776
Q ss_pred hHHhhhcCC
Q 007723 493 SARYISDRY 501 (591)
Q Consensus 493 s~r~i~~~~ 501 (591)
-.|...-|.
T Consensus 625 YcrEaGVRn 633 (906)
T KOG2004|consen 625 YCREAGVRN 633 (906)
T ss_pred HHHHHhHHH
Confidence 555544443
No 149
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.42 E-value=5.3e-12 Score=135.36 Aligned_cols=211 Identities=15% Similarity=0.167 Sum_probs=131.0
Q ss_pred ccCCcHHHHHHHHHHHHhcCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhccc------ccc
Q 007723 291 PVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGA------KER 364 (591)
Q Consensus 291 ~vvG~~~~i~~l~~~L~~~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~------~~~ 364 (591)
.++|+++.|+.+...+. ...|++|+||||||||++|++|+..+.... |.....+.+. ...++ .|. +..
T Consensus 21 ~i~gre~vI~lll~aal--ag~hVLL~GpPGTGKT~LAraLa~~~~~~~-~F~~~~~~ft--tp~DL-fG~l~i~~~~~~ 94 (498)
T PRK13531 21 GLYERSHAIRLCLLAAL--SGESVFLLGPPGIAKSLIARRLKFAFQNAR-AFEYLMTRFS--TPEEV-FGPLSIQALKDE 94 (498)
T ss_pred hccCcHHHHHHHHHHHc--cCCCEEEECCCChhHHHHHHHHHHHhcccC-cceeeeeeec--CcHHh-cCcHHHhhhhhc
Confidence 48999999999988775 467899999999999999999999875432 3222222221 11222 221 112
Q ss_pred chHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCCc------------EEEEecCCh
Q 007723 365 GELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGE------------LQCIASTTQ 432 (591)
Q Consensus 365 g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g~------------v~lI~att~ 432 (591)
|.+....+..+. ...+||+|||+.+ +...++.|+..|+++. ..+++|||+
T Consensus 95 g~f~r~~~G~L~-----~A~lLfLDEI~ra-------------sp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~ 156 (498)
T PRK13531 95 GRYQRLTSGYLP-----EAEIVFLDEIWKA-------------GPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNE 156 (498)
T ss_pred CchhhhcCCccc-----cccEEeecccccC-------------CHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCC
Confidence 222211111110 1128999999988 7788999999885432 244555553
Q ss_pred hHHHhhhcccHHHHccCc-ceeecCCC-HHHHHHHHHHHHH---------------HH----HhhcCCCCcHHHHHHHHH
Q 007723 433 DEHRTQFEKDKALARRFQ-PVLISEPS-QEDAVRILLGLRE---------------KY----EAHHNCKFTLEAINAAVH 491 (591)
Q Consensus 433 ~e~~~~~~~d~aL~~Rf~-~i~i~~p~-~~e~~~iL~~~~~---------------~~----~~~~~i~i~~~al~~l~~ 491 (591)
-+ ..-....++..||. .+.+++|+ .++..++|..... .+ ..-..+.+++.++++++.
T Consensus 157 LP--E~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~eyI~~ 234 (498)
T PRK13531 157 LP--EADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVFELIFQ 234 (498)
T ss_pred Cc--ccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHHHHHHH
Confidence 21 11123368999996 48888886 4555777754211 00 012467889999999998
Q ss_pred HhHHhh--hc--CCCcHHHHHHHHHHhhHhhhhhhccchh
Q 007723 492 LSARYI--SD--RYLPDKAIDLVDEAGSRAHIELFKRKKE 527 (591)
Q Consensus 492 ~s~r~i--~~--~~lp~~ai~lld~a~a~~~~~~~~~~~~ 527 (591)
+....- ++ ..-|+..+.++.-+-+.+-+.+.+....
T Consensus 235 L~~~lr~~r~~~~~SpR~~~~l~~~akA~A~l~GR~~V~p 274 (498)
T PRK13531 235 LRQQLDALPNAPYVSDRRWKKAIRLLQASAFFSGRDAIAP 274 (498)
T ss_pred HHHHHhcCCCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCH
Confidence 875321 11 1346778888888877777777665444
No 150
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.41 E-value=3.2e-12 Score=131.32 Aligned_cols=109 Identities=21% Similarity=0.234 Sum_probs=74.4
Q ss_pred CeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCC-cEEEEecCChh-------HHHhhhcccHHHHccCcceee
Q 007723 383 DVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-ELQCIASTTQD-------EHRTQFEKDKALARRFQPVLI 454 (591)
Q Consensus 383 ~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g-~v~lI~att~~-------e~~~~~~~d~aL~~Rf~~i~i 454 (591)
++||||||+|+| ..+.+..|..+++.. .-++|.+||.. ++.....++..|++||-.|..
T Consensus 279 pGVLFIDEvHmL-------------DiEcFsfLnralEs~~sPiiIlATNRg~~~irGt~~~sphGiP~DlLDRllII~t 345 (398)
T PF06068_consen 279 PGVLFIDEVHML-------------DIECFSFLNRALESELSPIIILATNRGITKIRGTDIISPHGIPLDLLDRLLIIRT 345 (398)
T ss_dssp E-EEEEESGGGS-------------BHHHHHHHHHHHTSTT--EEEEEES-SEEE-BTTS-EEETT--HHHHTTEEEEEE
T ss_pred cceEEecchhhc-------------cHHHHHHHHHHhcCCCCcEEEEecCceeeeccCccCcCCCCCCcchHhhcEEEEC
Confidence 689999999999 889999999999853 45667777743 222344567899999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhhhcCCCcHHHHHHHHHH
Q 007723 455 SEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEA 513 (591)
Q Consensus 455 ~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i~~~~lp~~ai~lld~a 513 (591)
.+++.++..+||.-.++.. ++.+++++++.+...+...- -+-|++||.-|
T Consensus 346 ~py~~~ei~~Il~iR~~~E----~v~i~~~al~~L~~ig~~~S-----LRYAiqLi~~a 395 (398)
T PF06068_consen 346 KPYSEEEIKQILKIRAKEE----DVEISEDALDLLTKIGVETS-----LRYAIQLITPA 395 (398)
T ss_dssp ----HHHHHHHHHHHHHHC----T--B-HHHHHHHHHHHHHS------HHHHHHCHHHH
T ss_pred CCCCHHHHHHHHHhhhhhh----cCcCCHHHHHHHHHHhhhcc-----HHHHHHhhhhh
Confidence 9999999999998777654 99999999999998875331 12277777644
No 151
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=2.5e-11 Score=128.10 Aligned_cols=220 Identities=22% Similarity=0.269 Sum_probs=149.8
Q ss_pred ccCCcHHHHHHHHHHHHh----cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhh---------
Q 007723 291 PVIGRETEIQRIIQILCR----RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLL--------- 357 (591)
Q Consensus 291 ~vvG~~~~i~~l~~~L~~----~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l--------- 357 (591)
.+.+|+.+++++..+|.. ..+.|++++|+||||||++++.+.+++..... +..++++|+-..
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~-----~~~~~yINc~~~~t~~~i~~~ 92 (366)
T COG1474 18 ELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSA-----NVEVVYINCLELRTPYQVLSK 92 (366)
T ss_pred cccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhc-----cCceEEEeeeeCCCHHHHHHH
Confidence 388999999998887654 45677999999999999999999999865321 111455554322
Q ss_pred -hc---cccccch-HHHHHHHHHHHHHh-cCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhccccc--CCcEEEEec
Q 007723 358 -MA---GAKERGE-LEARVTTLISEIQK-SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG--RGELQCIAS 429 (591)
Q Consensus 358 -~~---g~~~~g~-~~~~i~~i~~~~~~-~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le--~g~v~lI~a 429 (591)
.. .....|. ..+.++.+.+.+.+ ....|+++||++.|.... ..-+.+++ .... ..++.+|+.
T Consensus 93 i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~---------~~~LY~L~-r~~~~~~~~v~vi~i 162 (366)
T COG1474 93 ILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKD---------GEVLYSLL-RAPGENKVKVSIIAV 162 (366)
T ss_pred HHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhcccc---------chHHHHHH-hhccccceeEEEEEE
Confidence 11 1122221 22334444444444 467899999999996442 11222322 2222 235678888
Q ss_pred CChhHHHhhhcccHHHHccCcc--eeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhhhcCCCcHHHH
Q 007723 430 TTQDEHRTQFEKDKALARRFQP--VLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAI 507 (591)
Q Consensus 430 tt~~e~~~~~~~d~aL~~Rf~~--i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i~~~~lp~~ai 507 (591)
+|...+. ..+|+.+.++|.. |.|++++.+++..||....+.- ...-.+++++++.++..+...-.+ -++||
T Consensus 163 ~n~~~~~--~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~--~~~~~~~~~vl~lia~~~a~~~GD---AR~ai 235 (366)
T COG1474 163 SNDDKFL--DYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEG--FSAGVIDDDVLKLIAALVAAESGD---ARKAI 235 (366)
T ss_pred eccHHHH--HHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhh--ccCCCcCccHHHHHHHHHHHcCcc---HHHHH
Confidence 8877653 3467999999874 7899999999999998766643 335678999999999888776655 46899
Q ss_pred HHHHHHhhHhhhhhhccchhhhhhh
Q 007723 508 DLVDEAGSRAHIELFKRKKEQQTCI 532 (591)
Q Consensus 508 ~lld~a~a~~~~~~~~~~~~~~i~~ 532 (591)
++|..|+..+.-.+..+...+.+..
T Consensus 236 dilr~A~eiAe~~~~~~v~~~~v~~ 260 (366)
T COG1474 236 DILRRAGEIAEREGSRKVSEDHVRE 260 (366)
T ss_pred HHHHHHHHHHHhhCCCCcCHHHHHH
Confidence 9999999877766665555433333
No 152
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.40 E-value=9.7e-12 Score=145.00 Aligned_cols=182 Identities=19% Similarity=0.273 Sum_probs=124.5
Q ss_pred CccCCcHHHHHHHHHHHHhc-------CC--CCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhc-
Q 007723 290 DPVIGRETEIQRIIQILCRR-------TK--NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA- 359 (591)
Q Consensus 290 ~~vvG~~~~i~~l~~~L~~~-------~~--~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~- 359 (591)
..++||+..+..+...+.+. .+ .+++|+||+|||||++|++|+..+... +..++.+|++.+..
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~-------~~~~i~id~se~~~~ 640 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDS-------DDAMVRIDMSEFMEK 640 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcC-------CCcEEEEEhHHhhhh
Confidence 45899999999998877642 11 357899999999999999999988532 33566777765531
Q ss_pred -------ccc--ccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCCc-------
Q 007723 360 -------GAK--ERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGE------- 423 (591)
Q Consensus 360 -------g~~--~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g~------- 423 (591)
|.. |.|.-+ ...+.+.+...+..||||||++.+ ..++++.|+++++.|.
T Consensus 641 ~~~~~LiG~~pgy~g~~~--~g~l~~~v~~~p~~vLllDEieka-------------~~~v~~~Ll~ile~g~l~d~~gr 705 (857)
T PRK10865 641 HSVSRLVGAPPGYVGYEE--GGYLTEAVRRRPYSVILLDEVEKA-------------HPDVFNILLQVLDDGRLTDGQGR 705 (857)
T ss_pred hhHHHHhCCCCcccccch--hHHHHHHHHhCCCCeEEEeehhhC-------------CHHHHHHHHHHHhhCceecCCce
Confidence 111 112111 011223334456689999999988 6788999999887552
Q ss_pred ------EEEEecCChh--HHH------------h------hhcccHHHHccCc-ceeecCCCHHHHHHHHHHHHHHHHh-
Q 007723 424 ------LQCIASTTQD--EHR------------T------QFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEA- 475 (591)
Q Consensus 424 ------v~lI~att~~--e~~------------~------~~~~d~aL~~Rf~-~i~i~~p~~~e~~~iL~~~~~~~~~- 475 (591)
.++|+++|.. .+. . .-...|+|.+|++ ++.+.+++.+++..|+.........
T Consensus 706 ~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l~~r 785 (857)
T PRK10865 706 TVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKR 785 (857)
T ss_pred EEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 2477777752 110 0 0123589999995 6888889999999998887665432
Q ss_pred --h--cCCCCcHHHHHHHHHHh
Q 007723 476 --H--HNCKFTLEAINAAVHLS 493 (591)
Q Consensus 476 --~--~~i~i~~~al~~l~~~s 493 (591)
. ..+.++++++++++.+.
T Consensus 786 l~~~gi~l~is~~al~~L~~~g 807 (857)
T PRK10865 786 LEERGYEIHISDEALKLLSENG 807 (857)
T ss_pred HHhCCCcCcCCHHHHHHHHHcC
Confidence 2 34578999999998764
No 153
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.40 E-value=1.8e-12 Score=146.89 Aligned_cols=246 Identities=17% Similarity=0.223 Sum_probs=139.8
Q ss_pred CCccCCcHHHHHHHHHHHHhcCCCCCeEecCCCCcHHHHHHHHHHHHHhC----CC-----Ccc----------------
Q 007723 289 IDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQA----EV-----PVF---------------- 343 (591)
Q Consensus 289 ~~~vvG~~~~i~~l~~~L~~~~~~~ilL~GppGvGKT~la~~lA~~l~~~----~~-----p~~---------------- 343 (591)
|..|+||+..+..+.-.+..+...++||.|++|||||++|++|+..+..- +. |..
T Consensus 3 f~~ivGq~~~~~al~~~av~~~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~~ 82 (633)
T TIGR02442 3 FTAIVGQEDLKLALLLNAVDPRIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPSE 82 (633)
T ss_pred cchhcChHHHHHHHHHHhhCCCCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhcccccc
Confidence 67899999988888777666666789999999999999999999987210 00 000
Q ss_pred ccCceEEEeehhhh---hccccccchHHHHHHH---HH--HHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhh
Q 007723 344 LLSKRIMSLDMGLL---MAGAKERGELEARVTT---LI--SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLL 415 (591)
Q Consensus 344 ~~~~~~~~ld~~~l---~~g~~~~g~~~~~i~~---i~--~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L 415 (591)
....+++.+..+.. +.|.. +++..++. .+ ..+..+.++|||||||+.| ...+++.|
T Consensus 83 ~~~~pfv~~p~~~t~~~l~G~~---d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l-------------~~~~q~~L 146 (633)
T TIGR02442 83 QRPVPFVNLPLGATEDRVVGSL---DIERALREGEKAFQPGLLAEAHRGILYIDEVNLL-------------DDHLVDVL 146 (633)
T ss_pred cCCCCeeeCCCCCcHHHcCCcc---cHHHHhhcCCeeecCcceeecCCCeEEeChhhhC-------------CHHHHHHH
Confidence 01234444332211 11211 11111100 00 0112346789999999999 77889999
Q ss_pred cccccCC---------------cEEEEecCChhHHHhhhcccHHHHccCc-ceeecCCC-HHHHHHHHHHHHHHHHh---
Q 007723 416 KPSLGRG---------------ELQCIASTTQDEHRTQFEKDKALARRFQ-PVLISEPS-QEDAVRILLGLREKYEA--- 475 (591)
Q Consensus 416 ~~~le~g---------------~v~lI~att~~e~~~~~~~d~aL~~Rf~-~i~i~~p~-~~e~~~iL~~~~~~~~~--- 475 (591)
+..|+.+ .+++|+++|+.+ ..+.++|.+||. .|.+..+. .++..+++.........
T Consensus 147 l~~le~g~~~v~r~g~~~~~~~~~~lIat~np~e----g~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~~~~~~~~~ 222 (633)
T TIGR02442 147 LDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEE----GDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRLAFDADPEA 222 (633)
T ss_pred HHHHhcCCEEEEECCceeeecCCeEEEEecCCCC----CCCCHHHHhhcceEEEccCCCchHHHHHHHHHHHhhccCcHH
Confidence 9888765 378899888754 346789999997 36666664 46667777543221000
Q ss_pred -hcCCCCcHHHHHHHHHHhHHhhhcCCCcHHHHHHHHHHhhHhhhhhhccchhhhhhhhcCChHH-HHHHHHHHhhcchH
Q 007723 476 -HHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDD-YWQEIRTVQAMHEV 553 (591)
Q Consensus 476 -~~~i~i~~~al~~l~~~s~r~i~~~~lp~~ai~lld~a~a~~~~~~~~~~~~~~i~~l~~~~~~-~~~~~~~~~~~~d~ 553 (591)
...+......+..-+..+...++...+++.++++|...+....+.+..... .+.+...+ .++.....|+.+|+
T Consensus 223 ~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i-----~~~r~Ara~AaL~gr~~V~~~Dv 297 (633)
T TIGR02442 223 FAARWAAEQEELRNRIARARSLLPSVRISDSLIRFISELCIEFGVDGHRADI-----VMARAARALAALDGRRRVTAEDV 297 (633)
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHH-----HHHHHHHHHHHHcCCCcCCHHHH
Confidence 000000111111222233334444556666777666666544332221111 12222233 45566667777777
Q ss_pred HHHhhc
Q 007723 554 VQGSRL 559 (591)
Q Consensus 554 ~~a~~~ 559 (591)
+.|..+
T Consensus 298 ~~A~~l 303 (633)
T TIGR02442 298 REAAEL 303 (633)
T ss_pred HHHHHH
Confidence 777766
No 154
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.39 E-value=4.2e-12 Score=122.36 Aligned_cols=162 Identities=18% Similarity=0.180 Sum_probs=108.8
Q ss_pred HHHHHHHhcCC-CCCeEecCCCCcHHHHHHHHHHHHHhCC----CCc-cc---------cCceEEEeehhhhhccccccc
Q 007723 301 RIIQILCRRTK-NNPILLGESGVGKTAIAEGLAIRIVQAE----VPV-FL---------LSKRIMSLDMGLLMAGAKERG 365 (591)
Q Consensus 301 ~l~~~L~~~~~-~~ilL~GppGvGKT~la~~lA~~l~~~~----~p~-~~---------~~~~~~~ld~~~l~~g~~~~g 365 (591)
.+.+.+...+. +.+||+||+|+|||++++.+++.+.+.. .|- .. ....+..++... . ..
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~----~-~~- 76 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG----Q-SI- 76 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc----C-cC-
Confidence 45556666555 4578999999999999999999986531 000 00 001122222110 0 01
Q ss_pred hHHHHHHHHHHHHHh----cCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCC--cEEEEecCChhHHHhhh
Q 007723 366 ELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG--ELQCIASTTQDEHRTQF 439 (591)
Q Consensus 366 ~~~~~i~~i~~~~~~----~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g--~v~lI~att~~e~~~~~ 439 (591)
..+.++.+++.+.. ....|+||||+|.+ ..+.++.|+..++.. ...+|.+++.. .
T Consensus 77 -~~~~i~~i~~~~~~~~~~~~~kviiide~~~l-------------~~~~~~~Ll~~le~~~~~~~~il~~~~~-----~ 137 (188)
T TIGR00678 77 -KVDQVRELVEFLSRTPQESGRRVVIIEDAERM-------------NEAAANALLKTLEEPPPNTLFILITPSP-----E 137 (188)
T ss_pred -CHHHHHHHHHHHccCcccCCeEEEEEechhhh-------------CHHHHHHHHHHhcCCCCCeEEEEEECCh-----H
Confidence 11335555655543 45679999999999 566788898888753 35566655532 2
Q ss_pred cccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhh
Q 007723 440 EKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497 (591)
Q Consensus 440 ~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i 497 (591)
.+.+++.+||..+.+.+|+.+++.++|... + +++++++.++..+.+.+
T Consensus 138 ~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--------g--i~~~~~~~i~~~~~g~~ 185 (188)
T TIGR00678 138 KLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--------G--ISEEAAELLLALAGGSP 185 (188)
T ss_pred hChHHHHhhcEEeeCCCCCHHHHHHHHHHc--------C--CCHHHHHHHHHHcCCCc
Confidence 467899999999999999999988888543 3 78999999999887554
No 155
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.39 E-value=2.9e-12 Score=129.40 Aligned_cols=219 Identities=20% Similarity=0.210 Sum_probs=140.4
Q ss_pred cCCcHH---HHHHHHHHHHhc---CCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehh----------
Q 007723 292 VIGRET---EIQRIIQILCRR---TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMG---------- 355 (591)
Q Consensus 292 vvG~~~---~i~~l~~~L~~~---~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~---------- 355 (591)
+||... .++++.+++..+ +.+|++|+|++|.|||++++.+.+.-....-+. ...++|+.+.+.
T Consensus 36 WIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~-~~~~PVv~vq~P~~p~~~~~Y~ 114 (302)
T PF05621_consen 36 WIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDED-AERIPVVYVQMPPEPDERRFYS 114 (302)
T ss_pred eecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCC-CccccEEEEecCCCCChHHHHH
Confidence 566654 445566666553 348999999999999999999988643222111 123466666543
Q ss_pred ----hhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCCcEEEEecCC
Q 007723 356 ----LLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTT 431 (591)
Q Consensus 356 ----~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g~v~lI~att 431 (591)
.+.+..+.+......-..++.-++..+..+|+|||+|.++.... ..+.++.|.|+..-..-.+-+|+..|
T Consensus 115 ~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~------~~qr~~Ln~LK~L~NeL~ipiV~vGt 188 (302)
T PF05621_consen 115 AILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSY------RKQREFLNALKFLGNELQIPIVGVGT 188 (302)
T ss_pred HHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccH------HHHHHHHHHHHHHhhccCCCeEEecc
Confidence 12222222333333333344555566788999999999743211 22678889998887777888899999
Q ss_pred hhHHHhhhcccHHHHccCcceeecCCCHH-HHHHHHHHHHHHHHhhcCCCC-cHHHHHHHHHHhHHhhhcCCCcHHHHHH
Q 007723 432 QDEHRTQFEKDKALARRFQPVLISEPSQE-DAVRILLGLREKYEAHHNCKF-TLEAINAAVHLSARYISDRYLPDKAIDL 509 (591)
Q Consensus 432 ~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~-e~~~iL~~~~~~~~~~~~i~i-~~~al~~l~~~s~r~i~~~~lp~~ai~l 509 (591)
.+.+. .+..|++|.+||..+.++.+..+ +...+|..+-..+.....-.+ +++...++...|.+.+.+ ...+
T Consensus 189 ~~A~~-al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~------l~~l 261 (302)
T PF05621_consen 189 REAYR-ALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGE------LSRL 261 (302)
T ss_pred HHHHH-HhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHH------HHHH
Confidence 98876 57789999999999999888664 444444333332221222223 456678899998888665 6788
Q ss_pred HHHHhhHhhhhhhcc
Q 007723 510 VDEAGSRAHIELFKR 524 (591)
Q Consensus 510 ld~a~a~~~~~~~~~ 524 (591)
|..|+..+-..+...
T Consensus 262 l~~aA~~AI~sG~E~ 276 (302)
T PF05621_consen 262 LNAAAIAAIRSGEER 276 (302)
T ss_pred HHHHHHHHHhcCCce
Confidence 887775544444433
No 156
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.39 E-value=9.5e-12 Score=131.17 Aligned_cols=196 Identities=16% Similarity=0.204 Sum_probs=128.1
Q ss_pred hhcccccccCCCCccC-CcHHH--HHHHHHHHHhc--CCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEe
Q 007723 278 VDLTARASEELIDPVI-GRETE--IQRIIQILCRR--TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSL 352 (591)
Q Consensus 278 ~~l~~~~r~~~~~~vv-G~~~~--i~~l~~~L~~~--~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~l 352 (591)
..+..++ +|+.+| |-... ......+-+.+ ..+.++||||.|.|||||++++++.+.... .+.+++++
T Consensus 78 ~~l~~~y---tFdnFv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~-----~~a~v~y~ 149 (408)
T COG0593 78 SGLNPKY---TFDNFVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANG-----PNARVVYL 149 (408)
T ss_pred ccCCCCC---chhheeeCCchHHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhC-----CCceEEec
Confidence 3444444 455554 54433 23333343333 357788999999999999999999886532 25567776
Q ss_pred ehhhhhccccccchHH-HHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCCcEEEEecCC
Q 007723 353 DMGLLMAGAKERGELE-ARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTT 431 (591)
Q Consensus 353 d~~~l~~g~~~~g~~~-~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g~v~lI~att 431 (591)
....+.... ..... ..+.. |++.. .-.+|+||||+.+.++..+ ..++++.+..+.+.++.+++.+..
T Consensus 150 ~se~f~~~~--v~a~~~~~~~~-Fk~~y--~~dlllIDDiq~l~gk~~~-------qeefFh~FN~l~~~~kqIvltsdr 217 (408)
T COG0593 150 TSEDFTNDF--VKALRDNEMEK-FKEKY--SLDLLLIDDIQFLAGKERT-------QEEFFHTFNALLENGKQIVLTSDR 217 (408)
T ss_pred cHHHHHHHH--HHHHHhhhHHH-HHHhh--ccCeeeechHhHhcCChhH-------HHHHHHHHHHHHhcCCEEEEEcCC
Confidence 655432110 00000 00111 11111 2348999999999665443 778888888888888744444433
Q ss_pred hhHHHhhhcccHHHHccCc---ceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhhhc
Q 007723 432 QDEHRTQFEKDKALARRFQ---PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499 (591)
Q Consensus 432 ~~e~~~~~~~d~aL~~Rf~---~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i~~ 499 (591)
++. ....+.+.|++||. .+.+.+|+.+.+..||+..++.. ++.++++++++++....+.++.
T Consensus 218 ~P~--~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~----~~~i~~ev~~~la~~~~~nvRe 282 (408)
T COG0593 218 PPK--ELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDR----GIEIPDEVLEFLAKRLDRNVRE 282 (408)
T ss_pred Cch--hhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhc----CCCCCHHHHHHHHHHhhccHHH
Confidence 321 13346799999997 58999999999999998855544 9999999999999998877766
No 157
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.38 E-value=8.2e-12 Score=133.06 Aligned_cols=191 Identities=23% Similarity=0.294 Sum_probs=121.7
Q ss_pred cCCcHHHHHHHHHHHHh-----------c-------CCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEee
Q 007723 292 VIGRETEIQRIIQILCR-----------R-------TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (591)
Q Consensus 292 vvG~~~~i~~l~~~L~~-----------~-------~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld 353 (591)
++||++.++.+...+.+ . .+.+++|+||||||||++|++||..+ +.++..++
T Consensus 79 ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l----------~~pf~~~d 148 (413)
T TIGR00382 79 VIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARIL----------NVPFAIAD 148 (413)
T ss_pred ecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhc----------CCCeEEec
Confidence 79999999988776631 0 13579999999999999999999877 34455566
Q ss_pred hhhhhccccccch-HHHHHHHHHH----HHHhcCCeEEEEcCcchhhcCCCCCCC-CCCccHHHHHhhcccccC------
Q 007723 354 MGLLMAGAKERGE-LEARVTTLIS----EIQKSGDVILFIDEVHTLIGSGTVGRG-NKGTGLDISNLLKPSLGR------ 421 (591)
Q Consensus 354 ~~~l~~g~~~~g~-~~~~i~~i~~----~~~~~~~~ILfIDEi~~L~~~~~~~~~-~~~~~~~~~n~L~~~le~------ 421 (591)
...+. ...+.|. .+..+..++. .+....++||||||+|.+......... .+.....+++.|+.+|+.
T Consensus 149 a~~L~-~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~ 227 (413)
T TIGR00382 149 ATTLT-EAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVP 227 (413)
T ss_pred hhhcc-ccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecc
Confidence 65543 1224443 3333444333 223456779999999999653221110 011123678888887741
Q ss_pred ---------CcEEEEecCChh-------------------------------------HHH------h--hhcccHHHHc
Q 007723 422 ---------GELQCIASTTQD-------------------------------------EHR------T--QFEKDKALAR 447 (591)
Q Consensus 422 ---------g~v~lI~att~~-------------------------------------e~~------~--~~~~d~aL~~ 447 (591)
.+.++|.|+|.- ++. . .+.+.|.|..
T Consensus 228 ~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflg 307 (413)
T TIGR00382 228 PQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIG 307 (413)
T ss_pred cCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhC
Confidence 123445554430 000 0 0124588999
Q ss_pred cCc-ceeecCCCHHHHHHHHHH----HHHHHHhh-----cCCCCcHHHHHHHHHHh
Q 007723 448 RFQ-PVLISEPSQEDAVRILLG----LREKYEAH-----HNCKFTLEAINAAVHLS 493 (591)
Q Consensus 448 Rf~-~i~i~~p~~~e~~~iL~~----~~~~~~~~-----~~i~i~~~al~~l~~~s 493 (591)
|+. ++.+.+.+.+++.+|+.. +..+|.+. ..+.+++++++++++.+
T Consensus 308 Rld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~ 363 (413)
T TIGR00382 308 RLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKA 363 (413)
T ss_pred CCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhC
Confidence 997 467889999999999976 45555432 24578999999999885
No 158
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.38 E-value=3.4e-12 Score=133.71 Aligned_cols=154 Identities=16% Similarity=0.165 Sum_probs=109.8
Q ss_pred CCccCC-cHHHHHHHHHHHHhcCCCCC-eEecCCCCcHHHHHHHHHHHHHhCCCCcc--cc------------CceEEEe
Q 007723 289 IDPVIG-RETEIQRIIQILCRRTKNNP-ILLGESGVGKTAIAEGLAIRIVQAEVPVF--LL------------SKRIMSL 352 (591)
Q Consensus 289 ~~~vvG-~~~~i~~l~~~L~~~~~~~i-lL~GppGvGKT~la~~lA~~l~~~~~p~~--~~------------~~~~~~l 352 (591)
|+.++| |+..++.+...+...+.+|. ||+||+|+|||++|+.+++.+.+.+.... .. ...+..+
T Consensus 4 ~~~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i 83 (329)
T PRK08058 4 WEQLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLV 83 (329)
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEe
Confidence 567888 88899999999988777776 89999999999999999999876431100 00 0112222
Q ss_pred ehhhhhccccccchHHHHHHHHHHHHH----hcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccC--CcEEE
Q 007723 353 DMGLLMAGAKERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQC 426 (591)
Q Consensus 353 d~~~l~~g~~~~g~~~~~i~~i~~~~~----~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~--g~v~l 426 (591)
... |.. -..+.++.+.+.+. .++..|+||||+|.+ +.+++|.|+..||+ +.+.+
T Consensus 84 ~~~----~~~---i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~-------------~~~a~NaLLK~LEEPp~~~~~ 143 (329)
T PRK08058 84 APD----GQS---IKKDQIRYLKEEFSKSGVESNKKVYIIEHADKM-------------TASAANSLLKFLEEPSGGTTA 143 (329)
T ss_pred ccc----ccc---CCHHHHHHHHHHHhhCCcccCceEEEeehHhhh-------------CHHHHHHHHHHhcCCCCCceE
Confidence 111 110 11233556655543 245679999999999 77889999999995 56677
Q ss_pred EecCChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHH
Q 007723 427 IASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILL 467 (591)
Q Consensus 427 I~att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~ 467 (591)
|.+|+... .+.+++++||..+.+.+|+.++..+.|.
T Consensus 144 Il~t~~~~-----~ll~TIrSRc~~i~~~~~~~~~~~~~L~ 179 (329)
T PRK08058 144 ILLTENKH-----QILPTILSRCQVVEFRPLPPESLIQRLQ 179 (329)
T ss_pred EEEeCChH-----hCcHHHHhhceeeeCCCCCHHHHHHHHH
Confidence 77665432 4668999999999999999999877764
No 159
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.38 E-value=2.7e-11 Score=118.80 Aligned_cols=193 Identities=21% Similarity=0.285 Sum_probs=129.7
Q ss_pred cCCCCccCCcHHHHHHHHHH----HHhcCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhccc
Q 007723 286 EELIDPVIGRETEIQRIIQI----LCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGA 361 (591)
Q Consensus 286 ~~~~~~vvG~~~~i~~l~~~----L~~~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~ 361 (591)
+-.+++++|-+.+.+.|++. +.....+|+||+|++|||||++++++....... +.++++++-..+.
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~-------GLRlIev~k~~L~--- 92 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQ-------GLRLIEVSKEDLG--- 92 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhc-------CceEEEECHHHhc---
Confidence 44677899999988887764 444567899999999999999999999988543 5788888655442
Q ss_pred cccchHHHHHHHHHHHHHh-cCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccC------CcEEEEecCChhH
Q 007723 362 KERGELEARVTTLISEIQK-SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR------GELQCIASTTQDE 434 (591)
Q Consensus 362 ~~~g~~~~~i~~i~~~~~~-~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~------g~v~lI~att~~e 434 (591)
. +..+++.+.. ..+.|||+||+..= . .......|+.+|+. .++.+.+|+|.-.
T Consensus 93 -~-------l~~l~~~l~~~~~kFIlf~DDLsFe--~----------~d~~yk~LKs~LeGgle~~P~NvliyATSNRRH 152 (249)
T PF05673_consen 93 -D-------LPELLDLLRDRPYKFILFCDDLSFE--E----------GDTEYKALKSVLEGGLEARPDNVLIYATSNRRH 152 (249)
T ss_pred -c-------HHHHHHHHhcCCCCEEEEecCCCCC--C----------CcHHHHHHHHHhcCccccCCCcEEEEEecchhh
Confidence 1 5556666653 46899999997521 1 23345677777752 3566667666532
Q ss_pred HH-----hhh-----cc--------cHHHHccCc-ceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHH-HHHHHHhH
Q 007723 435 HR-----TQF-----EK--------DKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAI-NAAVHLSA 494 (591)
Q Consensus 435 ~~-----~~~-----~~--------d~aL~~Rf~-~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al-~~l~~~s~ 494 (591)
.- ... ++ --+|..||. .|.|.+|+.++..+|++.++.++ ++.++++.+ ..+.+.+.
T Consensus 153 Lv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~----g~~~~~e~l~~~Al~wa~ 228 (249)
T PF05673_consen 153 LVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERY----GLELDEEELRQEALQWAL 228 (249)
T ss_pred ccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHH
Confidence 11 000 01 125677998 59999999999999999888776 999986443 33334332
Q ss_pred HhhhcCCCcHHHHHHHHHHh
Q 007723 495 RYISDRYLPDKAIDLVDEAG 514 (591)
Q Consensus 495 r~i~~~~lp~~ai~lld~a~ 514 (591)
+. +..-+..|-++++...
T Consensus 229 ~r--g~RSGRtA~QF~~~l~ 246 (249)
T PF05673_consen 229 RR--GGRSGRTARQFIDDLA 246 (249)
T ss_pred Hc--CCCCHHHHHHHHHHHh
Confidence 22 1123556777766543
No 160
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.36 E-value=1.6e-11 Score=128.26 Aligned_cols=173 Identities=18% Similarity=0.215 Sum_probs=118.6
Q ss_pred ccCCcHHHHHHHHHHHH-hcCCCC-CeEecCCCCcHHHHHHHHHHHHHhCCCCccc--------------cCceEEEeeh
Q 007723 291 PVIGRETEIQRIIQILC-RRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPVFL--------------LSKRIMSLDM 354 (591)
Q Consensus 291 ~vvG~~~~i~~l~~~L~-~~~~~~-ilL~GppGvGKT~la~~lA~~l~~~~~p~~~--------------~~~~~~~ld~ 354 (591)
+++|.+..+.++..... ..+.++ +||+||||+|||++|.++|+.+.+....... ....+++++.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~ 81 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNP 81 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecc
Confidence 57888888888888777 455677 8999999999999999999999754321111 1235666665
Q ss_pred hhhhccccccchHHHHHHHHHHHHHh----cCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccC--CcEEEEe
Q 007723 355 GLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQCIA 428 (591)
Q Consensus 355 ~~l~~g~~~~g~~~~~i~~i~~~~~~----~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~--g~v~lI~ 428 (591)
+... ......+.++.+.+.... .+..|++|||+|.| +.+++|+|+..++. ...++|.
T Consensus 82 s~~~----~~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~m-------------t~~A~nallk~lEep~~~~~~il 144 (325)
T COG0470 82 SDLR----KIDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKL-------------TEDAANALLKTLEEPPKNTRFIL 144 (325)
T ss_pred cccC----CCcchHHHHHHHHHHhccCCCCCCceEEEeCcHHHH-------------hHHHHHHHHHHhccCCCCeEEEE
Confidence 4321 111244556666555433 35689999999999 77899999999984 4677788
Q ss_pred cCChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhhhcC
Q 007723 429 STTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR 500 (591)
Q Consensus 429 att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i~~~ 500 (591)
+|+.. ..+-+++++||..+.|.+|+.......+. ++++..++..+.+.+...
T Consensus 145 ~~n~~-----~~il~tI~SRc~~i~f~~~~~~~~i~~~e---------------~~~l~~i~~~~~gd~r~~ 196 (325)
T COG0470 145 ITNDP-----SKILPTIRSRCQRIRFKPPSRLEAIAWLE---------------DQGLEEIAAVAEGDARKA 196 (325)
T ss_pred EcCCh-----hhccchhhhcceeeecCCchHHHHHHHhh---------------ccchhHHHHHHHHHHHcC
Confidence 77743 23457999999999999866554444332 445555555555555443
No 161
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=6.9e-12 Score=125.25 Aligned_cols=153 Identities=22% Similarity=0.270 Sum_probs=106.5
Q ss_pred CeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhccccccchHHHHHHHHHHHHHh---cC--CeEEEE
Q 007723 314 PILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK---SG--DVILFI 388 (591)
Q Consensus 314 ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~~---~~--~~ILfI 388 (591)
++|+||||||||+|+++||+.+.-. ....+....+++++...+. .++.++..+.+..+|+.+.+ .+ -+.++|
T Consensus 180 iLlhGPPGTGKTSLCKaLaQkLSIR-~~~~y~~~~liEinshsLF--SKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLI 256 (423)
T KOG0744|consen 180 ILLHGPPGTGKTSLCKALAQKLSIR-TNDRYYKGQLIEINSHSLF--SKWFSESGKLVAKMFQKIQELVEDRGNLVFVLI 256 (423)
T ss_pred EEEeCCCCCChhHHHHHHHHhheee-ecCccccceEEEEehhHHH--HHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 5789999999999999999998321 2233446788999988887 45666666667777766543 33 345679
Q ss_pred cCcchhhcCCCCCCCCCC--ccHHHHHhhccccc----CCcEEEEecCChhHHHhhhcccHHHHccCc-ceeecCCCHHH
Q 007723 389 DEVHTLIGSGTVGRGNKG--TGLDISNLLKPSLG----RGELQCIASTTQDEHRTQFEKDKALARRFQ-PVLISEPSQED 461 (591)
Q Consensus 389 DEi~~L~~~~~~~~~~~~--~~~~~~n~L~~~le----~g~v~lI~att~~e~~~~~~~d~aL~~Rf~-~i~i~~p~~~e 461 (591)
||++.|..++....+..+ -...+.|+|+..+. ..++.+.+++|-. -.+|.+|.+|-+ +.++++|+...
T Consensus 257 DEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~-----~siD~AfVDRADi~~yVG~Pt~~a 331 (423)
T KOG0744|consen 257 DEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLT-----DSIDVAFVDRADIVFYVGPPTAEA 331 (423)
T ss_pred HHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchH-----HHHHHHhhhHhhheeecCCccHHH
Confidence 999999765422111111 13456777776664 2455555555553 368899999998 58999999999
Q ss_pred HHHHHHHHHHHHH
Q 007723 462 AVRILLGLREKYE 474 (591)
Q Consensus 462 ~~~iL~~~~~~~~ 474 (591)
+.+|++.-...+.
T Consensus 332 i~~IlkscieEL~ 344 (423)
T KOG0744|consen 332 IYEILKSCIEELI 344 (423)
T ss_pred HHHHHHHHHHHHH
Confidence 9999988666553
No 162
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.35 E-value=3.1e-12 Score=133.80 Aligned_cols=181 Identities=19% Similarity=0.256 Sum_probs=118.3
Q ss_pred cCCcHHHHHHHHHHHHh--cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhh--------ccc
Q 007723 292 VIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM--------AGA 361 (591)
Q Consensus 292 vvG~~~~i~~l~~~L~~--~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~--------~g~ 361 (591)
+||++..++++.+.+.+ ....+|+|+|++||||+++|++|+...... +.+++.+|++.+. .|.
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~-------~~pfv~vnc~~~~~~~l~~~lfG~ 73 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKRW-------QGPLVKLNCAALSENLLDSELFGH 73 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhcCcc-------CCCeEEEeCCCCChHHHHHHHhcc
Confidence 57888888888887765 456789999999999999999999866332 4566777765432 111
Q ss_pred cccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCC-------------cEEEEe
Q 007723 362 KERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-------------ELQCIA 428 (591)
Q Consensus 362 ~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g-------------~v~lI~ 428 (591)
. .|.+......-...+..+.+++||||||+.| ..++|..|+.+++.+ ++++|+
T Consensus 74 ~-~g~~~ga~~~~~G~~~~a~gGtL~Ldei~~L-------------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~ 139 (329)
T TIGR02974 74 E-AGAFTGAQKRHQGRFERADGGTLFLDELATA-------------SLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVC 139 (329)
T ss_pred c-cccccCcccccCCchhhCCCCEEEeCChHhC-------------CHHHHHHHHHHHHcCcEEecCCCceeccceEEEE
Confidence 0 0111000000001123456889999999999 778888888877643 368999
Q ss_pred cCChhHHH--hhhcccHHHHccCcceeecCCCH----HHHHHHHHHHHHHHHhhcC----CCCcHHHHHHHHHHh
Q 007723 429 STTQDEHR--TQFEKDKALARRFQPVLISEPSQ----EDAVRILLGLREKYEAHHN----CKFTLEAINAAVHLS 493 (591)
Q Consensus 429 att~~e~~--~~~~~d~aL~~Rf~~i~i~~p~~----~e~~~iL~~~~~~~~~~~~----i~i~~~al~~l~~~s 493 (591)
+|+.+--. ..-...+.|..||..+.|..|+. +++..++..++.++...++ ..+++++++.+..+.
T Consensus 140 at~~~l~~~~~~g~fr~dL~~rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~ 214 (329)
T TIGR02974 140 ATNADLPALAAEGRFRADLLDRLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYH 214 (329)
T ss_pred echhhHHHHhhcCchHHHHHHHhcchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCC
Confidence 98875311 11234577888997666666665 4444455555555444333 468999999988875
No 163
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.34 E-value=4.6e-12 Score=140.18 Aligned_cols=247 Identities=15% Similarity=0.149 Sum_probs=155.8
Q ss_pred CccCCcHHHHHHHHHHHHhcC------------CCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhh
Q 007723 290 DPVIGRETEIQRIIQILCRRT------------KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLL 357 (591)
Q Consensus 290 ~~vvG~~~~i~~l~~~L~~~~------------~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l 357 (591)
..++|++.....+.-.+..+. .-|+||+|+||+|||++++.+++...... +..+.. .+...+
T Consensus 203 p~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~---~~~~~~---~~~~~l 276 (509)
T smart00350 203 PSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAV---YTTGKG---SSAVGL 276 (509)
T ss_pred ccccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcce---EcCCCC---CCcCCc
Confidence 358899987666555554421 12899999999999999999998763210 000000 011111
Q ss_pred hcc---ccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCC------------
Q 007723 358 MAG---AKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG------------ 422 (591)
Q Consensus 358 ~~g---~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g------------ 422 (591)
... ....|++. ++. ..+..+++++++|||++.+ ....+..|...|+.+
T Consensus 277 ~~~~~~~~~~g~~~--~~~--G~l~~A~~Gil~iDEi~~l-------------~~~~q~~L~e~me~~~i~i~k~G~~~~ 339 (509)
T smart00350 277 TAAVTRDPETREFT--LEG--GALVLADNGVCCIDEFDKM-------------DDSDRTAIHEAMEQQTISIAKAGITTT 339 (509)
T ss_pred cccceEccCcceEE--ecC--ccEEecCCCEEEEechhhC-------------CHHHHHHHHHHHhcCEEEEEeCCEEEE
Confidence 100 00111111 000 0112356789999999999 556677777777543
Q ss_pred ---cEEEEecCChhHH--H------hhhcccHHHHccCcc--eeecCCCHHHHHHHHHHHHHHHHhh-------cCCCCc
Q 007723 423 ---ELQCIASTTQDEH--R------TQFEKDKALARRFQP--VLISEPSQEDAVRILLGLREKYEAH-------HNCKFT 482 (591)
Q Consensus 423 ---~v~lI~att~~e~--~------~~~~~d~aL~~Rf~~--i~i~~p~~~e~~~iL~~~~~~~~~~-------~~i~i~ 482 (591)
.+.+|+++|+.+- . ..+.+.+++.+||+. +.+..|+.+...+|+.++....... ....++
T Consensus 340 l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~ 419 (509)
T smart00350 340 LNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPIS 419 (509)
T ss_pred ecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCC
Confidence 4578999998531 0 124688999999974 5667889999899998876543211 112477
Q ss_pred HHHHHHHHHHhHHhh-hcCCCcHHHHHHHHHHhhHhhhhhhcc------c-hhhhhhhhcCChHH-HHHHHHHHhhcchH
Q 007723 483 LEAINAAVHLSARYI-SDRYLPDKAIDLVDEAGSRAHIELFKR------K-KEQQTCILSKPPDD-YWQEIRTVQAMHEV 553 (591)
Q Consensus 483 ~~al~~l~~~s~r~i-~~~~lp~~ai~lld~a~a~~~~~~~~~------~-~~~~i~~l~~~~~~-~~~~~~~~~~~~d~ 553 (591)
.+.+...+.++++++ +. +++.+.++|-......+...... + ...+...|.+..++ ++......|+.+|+
T Consensus 420 ~~~l~~yi~~ar~~~~P~--ls~~~~~~i~~~y~~~R~~~~~~~~~~~~~~t~R~l~sliRla~A~A~l~~r~~V~~~Dv 497 (509)
T smart00350 420 QEFLRKYIAYAREKIKPK--LSEEAAEKLVKAYVDLRKEDSQSEARSSIPITVRQLESIIRLSEAHAKMRLSDVVEEADV 497 (509)
T ss_pred HHHHHHHHHHHHhcCCCC--CCHHHHHHHHHHHHHhcccccccccccccCcCHHHHHHHHHHHHHHHHHcCCCccCHHHH
Confidence 888888888888754 33 68899998888776655543321 1 11333455555555 67777888999999
Q ss_pred HHHhhchh
Q 007723 554 VQGSRLKY 561 (591)
Q Consensus 554 ~~a~~~~~ 561 (591)
+.|.++..
T Consensus 498 ~~ai~l~~ 505 (509)
T smart00350 498 EEAIRLLR 505 (509)
T ss_pred HHHHHHHH
Confidence 99998754
No 164
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.34 E-value=3e-12 Score=136.83 Aligned_cols=185 Identities=21% Similarity=0.337 Sum_probs=133.5
Q ss_pred CCCccCCcHHHHHHHHHHHHh--cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhh--------
Q 007723 288 LIDPVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLL-------- 357 (591)
Q Consensus 288 ~~~~vvG~~~~i~~l~~~L~~--~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l-------- 357 (591)
...++||+...+.++.+.+.+ .+..+|+|+|++||||..+|++|++...+.+. +|+.++++++
T Consensus 139 ~~~~liG~S~am~~l~~~i~kvA~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~-------PFVavNcaAip~~l~ESE 211 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKVAPSDASVLITGESGTGKELVARAIHQASPRAKG-------PFIAVNCAAIPENLLESE 211 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHhhCcccCC-------CceeeecccCCHHHHHHH
Confidence 456899999999999998876 56678999999999999999999998765544 4555555433
Q ss_pred hccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCC-------------cE
Q 007723 358 MAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-------------EL 424 (591)
Q Consensus 358 ~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g-------------~v 424 (591)
+.|. ..|.|+.....-...+..+.+++||||||..| ..++|.-|+.+|+.+ ++
T Consensus 212 LFGh-ekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~m-------------pl~~Q~kLLRvLqe~~~~rvG~~~~i~vdv 277 (464)
T COG2204 212 LFGH-EKGAFTGAITRRIGRFEQANGGTLFLDEIGEM-------------PLELQVKLLRVLQEREFERVGGNKPIKVDV 277 (464)
T ss_pred hhcc-cccCcCCcccccCcceeEcCCceEEeeccccC-------------CHHHHHHHHHHHHcCeeEecCCCcccceee
Confidence 2332 23444443333333444578899999999999 889999999888744 47
Q ss_pred EEEecCChhHHHh--hhcccHHHHccCcceeecCCCH----HHHHHHHHHHHHHHHhhcC---CCCcHHHHHHHHHHh
Q 007723 425 QCIASTTQDEHRT--QFEKDKALARRFQPVLISEPSQ----EDAVRILLGLREKYEAHHN---CKFTLEAINAAVHLS 493 (591)
Q Consensus 425 ~lI~att~~e~~~--~~~~d~aL~~Rf~~i~i~~p~~----~e~~~iL~~~~~~~~~~~~---i~i~~~al~~l~~~s 493 (591)
++|++|+.+-... .-..-..|..|+.++.+..|.. +++..++.+++.++...++ ..++++++..+..+.
T Consensus 278 RiIaaT~~dL~~~v~~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~y~ 355 (464)
T COG2204 278 RIIAATNRDLEEEVAAGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLAYD 355 (464)
T ss_pred EEEeecCcCHHHHHHcCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCC
Confidence 8999998863221 1123467778999888888876 5555566666666665554 478999998888764
No 165
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.33 E-value=1.5e-12 Score=139.04 Aligned_cols=181 Identities=20% Similarity=0.335 Sum_probs=125.9
Q ss_pred CCCCccCCcHHHHHHHHHHHHh--cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhh-------
Q 007723 287 ELIDPVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLL------- 357 (591)
Q Consensus 287 ~~~~~vvG~~~~i~~l~~~L~~--~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l------- 357 (591)
-+|++++|.+.++.++++...+ +...+|+|.|++||||..+|++|++...+. +.+|+.++++++
T Consensus 242 y~f~~Iig~S~~m~~~~~~akr~A~tdstVLi~GESGTGKElfA~~IH~~S~R~-------~~PFIaiNCaAiPe~LlES 314 (560)
T COG3829 242 YTFDDIIGESPAMLRVLELAKRIAKTDSTVLILGESGTGKELFARAIHNLSPRA-------NGPFIAINCAAIPETLLES 314 (560)
T ss_pred cchhhhccCCHHHHHHHHHHHhhcCCCCcEEEecCCCccHHHHHHHHHhcCccc-------CCCeEEEecccCCHHHHHH
Confidence 3799999999999999988776 556789999999999999999999987554 455666776643
Q ss_pred -hccccccchHHHHHH----HHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCC----------
Q 007723 358 -MAGAKERGELEARVT----TLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG---------- 422 (591)
Q Consensus 358 -~~g~~~~g~~~~~i~----~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g---------- 422 (591)
+.|+ ..|.|....+ .+|+ .++++.||+|||..| ...+|.-|+.+|+.+
T Consensus 315 ELFGy-e~GAFTGA~~~GK~GlfE---~A~gGTLFLDEIgem-------------pl~LQaKLLRVLQEkei~rvG~t~~ 377 (560)
T COG3829 315 ELFGY-EKGAFTGASKGGKPGLFE---LANGGTLFLDEIGEM-------------PLPLQAKLLRVLQEKEIERVGGTKP 377 (560)
T ss_pred HHhCc-CCccccccccCCCCccee---eccCCeEEehhhccC-------------CHHHHHHHHHHHhhceEEecCCCCc
Confidence 2343 1233333222 1222 356889999999999 788999999888744
Q ss_pred ---cEEEEecCChhHHHhhhc---ccHHHHccCcceeecCCCHH----HHHHHHHHHHHHHHhhcC--CC-CcHHHHHHH
Q 007723 423 ---ELQCIASTTQDEHRTQFE---KDKALARRFQPVLISEPSQE----DAVRILLGLREKYEAHHN--CK-FTLEAINAA 489 (591)
Q Consensus 423 ---~v~lI~att~~e~~~~~~---~d~aL~~Rf~~i~i~~p~~~----e~~~iL~~~~~~~~~~~~--i~-i~~~al~~l 489 (591)
++++|+|||.+.- +.++ .-..|--|+.++.+..|+.. ++..+...++.++...++ +. ++++++..+
T Consensus 378 ~~vDVRIIAATN~nL~-~~i~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~~L 456 (560)
T COG3829 378 IPVDVRIIAATNRNLE-KMIAEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDALALL 456 (560)
T ss_pred eeeEEEEEeccCcCHH-HHHhcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHHHHHH
Confidence 4799999998642 2221 12445558888888888764 444444445555544443 33 788888887
Q ss_pred HHH
Q 007723 490 VHL 492 (591)
Q Consensus 490 ~~~ 492 (591)
.++
T Consensus 457 ~~y 459 (560)
T COG3829 457 LRY 459 (560)
T ss_pred HhC
Confidence 665
No 166
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.32 E-value=1.7e-11 Score=128.64 Aligned_cols=212 Identities=20% Similarity=0.212 Sum_probs=129.0
Q ss_pred ccCCcHHHHHHHHHHHHhcCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhccccccchHHHH
Q 007723 291 PVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEAR 370 (591)
Q Consensus 291 ~vvG~~~~i~~l~~~L~~~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~~~~g~~~~~ 370 (591)
.++|+++++..+...+.. +.+++|.||||||||++|+.+|+.+ +.+++.+.+...+....-.|.+.-.
T Consensus 25 ~~~g~~~~~~~~l~a~~~--~~~vll~G~PG~gKT~la~~lA~~l----------~~~~~~i~~t~~l~p~d~~G~~~~~ 92 (329)
T COG0714 25 VVVGDEEVIELALLALLA--GGHVLLEGPPGVGKTLLARALARAL----------GLPFVRIQCTPDLLPSDLLGTYAYA 92 (329)
T ss_pred eeeccHHHHHHHHHHHHc--CCCEEEECCCCccHHHHHHHHHHHh----------CCCeEEEecCCCCCHHHhcCchhHh
Confidence 378888888887766543 6789999999999999999999988 3455555544332222222222111
Q ss_pred HH----HHHHHH----HhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccC--------------CcEEEEe
Q 007723 371 VT----TLISEI----QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--------------GELQCIA 428 (591)
Q Consensus 371 i~----~i~~~~----~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~--------------g~v~lI~ 428 (591)
.+ ..+... ..+-.+|+++|||++. ..++++.|+..|+. ..+++|+
T Consensus 93 ~~~~~~~~~~~~~gpl~~~~~~ill~DEInra-------------~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~via 159 (329)
T COG0714 93 ALLLEPGEFRFVPGPLFAAVRVILLLDEINRA-------------PPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIA 159 (329)
T ss_pred hhhccCCeEEEecCCcccccceEEEEeccccC-------------CHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEE
Confidence 11 000000 0011149999999988 67889999988864 2457788
Q ss_pred cCChhHHHhhhcccHHHHccC-cceeecCCCH-HHHHHHHHHHHHHH---------------------HhhcCCCCcHHH
Q 007723 429 STTQDEHRTQFEKDKALARRF-QPVLISEPSQ-EDAVRILLGLREKY---------------------EAHHNCKFTLEA 485 (591)
Q Consensus 429 att~~e~~~~~~~d~aL~~Rf-~~i~i~~p~~-~e~~~iL~~~~~~~---------------------~~~~~i~i~~~a 485 (591)
+.|+.+|.....+..++.+|| -.+.++.|.. .+...++....... ...+++.+++++
T Consensus 160 T~Np~e~~g~~~l~eA~ldRf~~~~~v~yp~~~~e~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (329)
T COG0714 160 TQNPGEYEGTYPLPEALLDRFLLRIYVDYPDSEEEERIILARVGGVDELDLESLVKPVLSDEELLRLQKEVKKVPVSDEV 239 (329)
T ss_pred ccCccccCCCcCCCHHHHhhEEEEEecCCCCchHHHHHHHHhCccccccccchhhhhhhCHHHHHHHHhhhccCCchHHH
Confidence 889888877778899999999 5799999944 44444433322100 001256677777
Q ss_pred HHHHHHHhHHhhhcCC-----CcHHHHHHHHHHhhHhhhhhhccchh
Q 007723 486 INAAVHLSARYISDRY-----LPDKAIDLVDEAGSRAHIELFKRKKE 527 (591)
Q Consensus 486 l~~l~~~s~r~i~~~~-----lp~~ai~lld~a~a~~~~~~~~~~~~ 527 (591)
.+++..+......... .|.....++..+.+.+.+.+......
T Consensus 240 ~~~~~~l~~~~~~~~~~~~~~s~r~~~~~~~~~~~~a~~~~~~~~~~ 286 (329)
T COG0714 240 IDYIVTLVAALREAPDVALGASPRASLALLAALRALALLDGRDAVIP 286 (329)
T ss_pred HHHHHHHHHhhccccchhccCCchhHHHHHHHHHhhhhhcCccccCH
Confidence 7777666554432211 24444555554444444444443333
No 167
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.31 E-value=1.6e-11 Score=127.96 Aligned_cols=242 Identities=18% Similarity=0.211 Sum_probs=147.3
Q ss_pred CCccCCcHHHHHHHHHHHHhcCCCCCeEecCCCCcHHHHHHHHHHHHHhCC----CCcc---------------------
Q 007723 289 IDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAE----VPVF--------------------- 343 (591)
Q Consensus 289 ~~~vvG~~~~i~~l~~~L~~~~~~~ilL~GppGvGKT~la~~lA~~l~~~~----~p~~--------------------- 343 (591)
|.-++|++.....|....-.+...++|+-|+.|+||||++++|+..+.... +|+.
T Consensus 16 f~aivGqd~lk~aL~l~av~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~~~c~~c~~k~~e~~ 95 (423)
T COG1239 16 FTAIVGQDPLKLALGLNAVDPQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPEEMCDECRAKGDELE 95 (423)
T ss_pred hhhhcCchHHHHHHhhhhcccccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChhhhhHHHHhhccccc
Confidence 345899997776666555557778899999999999999999999874322 1100
Q ss_pred -----ccCceEEEeehhhh---hccccccchHHHHHHH---HH--HHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHH
Q 007723 344 -----LLSKRIMSLDMGLL---MAGAKERGELEARVTT---LI--SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLD 410 (591)
Q Consensus 344 -----~~~~~~~~ld~~~l---~~g~~~~g~~~~~i~~---i~--~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~ 410 (591)
.+..+++.+-++.. +.|.- +.++.++. .| ..+.+++.+||||||+..| ...
T Consensus 96 ~~~~~~r~v~~v~lPl~ateDrvvGsl---Di~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL-------------~d~ 159 (423)
T COG1239 96 WLPREKRKVPFVALPLGATEDRLVGSL---DIEKALEEGPKAFQPGLLARANRGILYVDEVNLL-------------DDH 159 (423)
T ss_pred cccccceecceecCCCccchhhhcccc---CHHHHHhcCccccCCcchhhccCCEEEEeccccc-------------cHH
Confidence 00001111111100 01110 11111111 00 0123467899999999999 778
Q ss_pred HHHhhcccccCC---------------cEEEEecCChhHHHhhhcccHHHHccCc-ceeecCC-CHHHHHHHHHHHHHHH
Q 007723 411 ISNLLKPSLGRG---------------ELQCIASTTQDEHRTQFEKDKALARRFQ-PVLISEP-SQEDAVRILLGLREKY 473 (591)
Q Consensus 411 ~~n~L~~~le~g---------------~v~lI~att~~e~~~~~~~d~aL~~Rf~-~i~i~~p-~~~e~~~iL~~~~~~~ 473 (591)
+++.|+..++.| ++++|+++|+++ -++-+.|++||. .|.+..| +.++.++|++.....
T Consensus 160 lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEe----GeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~~f- 234 (423)
T COG1239 160 LVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEE----GELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRLAF- 234 (423)
T ss_pred HHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccc----cccchhhHhhhcceeeccCCCCHHHHHHHHHHHHHh-
Confidence 999999888764 579999999985 567799999998 4888888 457778887654432
Q ss_pred HhhcCCCCcHHHHHHHHHH----------hHHhhhcCCCcHHHHHHHHHHhhHhhhhhhccchhhhhhhhcCChHHHHHH
Q 007723 474 EAHHNCKFTLEAINAAVHL----------SARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQE 543 (591)
Q Consensus 474 ~~~~~i~i~~~al~~l~~~----------s~r~i~~~~lp~~ai~lld~a~a~~~~~~~~~~~~~~i~~l~~~~~~~~~~ 543 (591)
+ ...+..++.+... +...++...+++.+...+-+.|.+..+.+.....- +....+.+ ..+.
T Consensus 235 ~-----~~Pe~f~~~~~~~~~~lR~~ii~ar~~l~~V~l~~~~~~~ia~~~~~~~v~g~radi~--~~r~a~a~--aa~~ 305 (423)
T COG1239 235 E-----AVPEAFLEKYADAQRALRARIIAARSLLSEVELDDDAETKIAELCARLAVDGHRADIV--VVRAAKAL--AALR 305 (423)
T ss_pred h-----cCcHHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHHHHhccCCCchhhH--HHHHHHHH--HHhc
Confidence 1 2222222222222 12334555667777788888887776666443332 22222223 3344
Q ss_pred HHHHhhcchHHHHhhch
Q 007723 544 IRTVQAMHEVVQGSRLK 560 (591)
Q Consensus 544 ~~~~~~~~d~~~a~~~~ 560 (591)
....++.+|++.|..+-
T Consensus 306 Gr~~v~~~Di~~a~~l~ 322 (423)
T COG1239 306 GRTEVEEEDIREAAELA 322 (423)
T ss_pred CceeeehhhHHHHHhhh
Confidence 44568889999888874
No 168
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.31 E-value=7.7e-12 Score=130.85 Aligned_cols=185 Identities=17% Similarity=0.228 Sum_probs=120.4
Q ss_pred CCCccCCcHHHHHHHHHHHHh--cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhh-------
Q 007723 288 LIDPVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM------- 358 (591)
Q Consensus 288 ~~~~vvG~~~~i~~l~~~L~~--~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~------- 358 (591)
.+++++|.+..++++++.+.+ ....+|+|+|++||||+++|++|+...... +.+++.+|+..+-
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~-------~~pfv~v~c~~~~~~~~~~~ 76 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSRW-------QGPFISLNCAALNENLLDSE 76 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhCCcc-------CCCeEEEeCCCCCHHHHHHH
Confidence 467899999999999888766 456789999999999999999999755322 4566677765432
Q ss_pred -ccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCC-------------cE
Q 007723 359 -AGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-------------EL 424 (591)
Q Consensus 359 -~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g-------------~v 424 (591)
.|.. .+.+..........+..+.+++||||||+.| ....+..|..+++.+ ++
T Consensus 77 lfg~~-~~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L-------------~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~ 142 (326)
T PRK11608 77 LFGHE-AGAFTGAQKRHPGRFERADGGTLFLDELATA-------------PMLVQEKLLRVIEYGELERVGGSQPLQVNV 142 (326)
T ss_pred Hcccc-ccccCCcccccCCchhccCCCeEEeCChhhC-------------CHHHHHHHHHHHhcCcEEeCCCCceeeccE
Confidence 1110 0000000000011223466789999999999 677788777777543 37
Q ss_pred EEEecCChhHHH--hhhcccHHHHccCcceeecCCCHH----HHHHHHHHHHHHHHhhcC----CCCcHHHHHHHHHHh
Q 007723 425 QCIASTTQDEHR--TQFEKDKALARRFQPVLISEPSQE----DAVRILLGLREKYEAHHN----CKFTLEAINAAVHLS 493 (591)
Q Consensus 425 ~lI~att~~e~~--~~~~~d~aL~~Rf~~i~i~~p~~~----e~~~iL~~~~~~~~~~~~----i~i~~~al~~l~~~s 493 (591)
++|++++.+--. ..-...+.|..||..+.|..|+.. ++..++..++.++...++ ..+++++++.+..+.
T Consensus 143 RiI~~s~~~l~~l~~~g~f~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~~y~ 221 (326)
T PRK11608 143 RLVCATNADLPAMVAEGKFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLNYR 221 (326)
T ss_pred EEEEeCchhHHHHHHcCCchHHHHHhcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhCC
Confidence 889988775311 112345788889987667777654 444455555544444433 358999998888774
No 169
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.31 E-value=3.6e-12 Score=142.30 Aligned_cols=189 Identities=21% Similarity=0.300 Sum_probs=127.0
Q ss_pred cccCCCCccCCcHHHHHHHHHHHHh--cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhh---
Q 007723 284 ASEELIDPVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM--- 358 (591)
Q Consensus 284 ~r~~~~~~vvG~~~~i~~l~~~L~~--~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~--- 358 (591)
.+...|+.++|++..++++++.+.+ ....+|+|+||+|||||++|++|+...... +.+++.+|+..+.
T Consensus 190 ~~~~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~-------~~pfv~i~c~~~~~~~ 262 (534)
T TIGR01817 190 RRSGKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRA-------KRPFVKVNCAALSETL 262 (534)
T ss_pred cccCccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCCCC-------CCCeEEeecCCCCHHH
Confidence 4556889999999999999887765 456789999999999999999999876332 4567777775442
Q ss_pred -----ccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCC-----------
Q 007723 359 -----AGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG----------- 422 (591)
Q Consensus 359 -----~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g----------- 422 (591)
.|.. .|.+..........+..+.+++||||||+.| ..+.+..|+.+++.+
T Consensus 263 ~~~~lfg~~-~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L-------------~~~~Q~~Ll~~l~~~~~~~~~~~~~~ 328 (534)
T TIGR01817 263 LESELFGHE-KGAFTGAIAQRKGRFELADGGTLFLDEIGEI-------------SPAFQAKLLRVLQEGEFERVGGNRTL 328 (534)
T ss_pred HHHHHcCCC-CCccCCCCcCCCCcccccCCCeEEEechhhC-------------CHHHHHHHHHHHhcCcEEECCCCceE
Confidence 1110 1111000000000122356789999999999 677888888877643
Q ss_pred --cEEEEecCChhHHH--hhhcccHHHHccCcceeecCCCH----HHHHHHHHHHHHHHHhhcC--CCCcHHHHHHHHHH
Q 007723 423 --ELQCIASTTQDEHR--TQFEKDKALARRFQPVLISEPSQ----EDAVRILLGLREKYEAHHN--CKFTLEAINAAVHL 492 (591)
Q Consensus 423 --~v~lI~att~~e~~--~~~~~d~aL~~Rf~~i~i~~p~~----~e~~~iL~~~~~~~~~~~~--i~i~~~al~~l~~~ 492 (591)
++++|++|+.+... ..-...+.|..||..+.+..|+. +++..++..++.++...++ +.+++++++.+..+
T Consensus 329 ~~~~riI~~s~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~~ 408 (534)
T TIGR01817 329 KVDVRLVAATNRDLEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMSC 408 (534)
T ss_pred eecEEEEEeCCCCHHHHHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhC
Confidence 37899988765321 11234577888888766666654 5566666666666544333 67999999999887
Q ss_pred h
Q 007723 493 S 493 (591)
Q Consensus 493 s 493 (591)
.
T Consensus 409 ~ 409 (534)
T TIGR01817 409 K 409 (534)
T ss_pred C
Confidence 4
No 170
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.30 E-value=1.6e-11 Score=115.41 Aligned_cols=142 Identities=17% Similarity=0.150 Sum_probs=93.4
Q ss_pred CcHHHHHHHHHHHHhcCCCC-CeEecCCCCcHHHHHHHHHHHHHhCCCCcc-------------ccCceEEEeehhhhhc
Q 007723 294 GRETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPVF-------------LLSKRIMSLDMGLLMA 359 (591)
Q Consensus 294 G~~~~i~~l~~~L~~~~~~~-ilL~GppGvGKT~la~~lA~~l~~~~~p~~-------------~~~~~~~~ld~~~l~~ 359 (591)
||++.++.|...+...+.++ +||+||+|+||+++|..+++.+.+...... .....++.++....
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~-- 78 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKK-- 78 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTS--
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccc--
Confidence 78999999999998888777 599999999999999999999976443210 11233444432211
Q ss_pred cccccchHHHHHHHHHHHHHh----cCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCC--cEEEEecCChh
Q 007723 360 GAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG--ELQCIASTTQD 433 (591)
Q Consensus 360 g~~~~g~~~~~i~~i~~~~~~----~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g--~v~lI~att~~ 433 (591)
+ ..-..+.++.+.+.+.. .+..|++|||+|.| +.+++|+|+..||+. .+++|..|+..
T Consensus 79 --~-~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l-------------~~~a~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 79 --K-KSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKL-------------TEEAQNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp --S-SSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS--------------HHHHHHHHHHHHSTTTTEEEEEEES-G
T ss_pred --c-chhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhh-------------hHHHHHHHHHHhcCCCCCEEEEEEECCh
Confidence 0 01112335565555432 45789999999999 789999999999954 56677666653
Q ss_pred HHHhhhcccHHHHccCcceeecCCC
Q 007723 434 EHRTQFEKDKALARRFQPVLISEPS 458 (591)
Q Consensus 434 e~~~~~~~d~aL~~Rf~~i~i~~p~ 458 (591)
. .+-++++|||..+.+.+.+
T Consensus 143 ~-----~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 143 S-----KILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp G-----GS-HHHHTTSEEEEE----
T ss_pred H-----HChHHHHhhceEEecCCCC
Confidence 2 4679999999999887653
No 171
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.30 E-value=7e-11 Score=122.32 Aligned_cols=173 Identities=14% Similarity=0.151 Sum_probs=113.0
Q ss_pred cHHHHHHHHHHHHhcCCCC-CeEecCCCCcHHHHHHHHHHHHHhCCCCcc--ccC---------ceEEEeehhhhhcccc
Q 007723 295 RETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPVF--LLS---------KRIMSLDMGLLMAGAK 362 (591)
Q Consensus 295 ~~~~i~~l~~~L~~~~~~~-ilL~GppGvGKT~la~~lA~~l~~~~~p~~--~~~---------~~~~~ld~~~l~~g~~ 362 (591)
++..++.+...+.+.+.+| +||+||+|+||+++|..+|+.+.+...... ... -.++.++...--.|.+
T Consensus 9 ~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k 88 (319)
T PRK08769 9 QQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDK 88 (319)
T ss_pred HHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCccccc
Confidence 4557788888888877666 789999999999999999999977431110 000 1122221000000100
Q ss_pred c-cchHHHHHHHHHHHHHh----cCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCC--cEEEEecCChhHH
Q 007723 363 E-RGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG--ELQCIASTTQDEH 435 (591)
Q Consensus 363 ~-~g~~~~~i~~i~~~~~~----~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g--~v~lI~att~~e~ 435 (591)
. ..-..+.++.+.+.+.. .+..|++||++|.| +..++|.|++.||+. ++.+|..++...
T Consensus 89 ~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m-------------~~~AaNaLLKtLEEPp~~~~fiL~~~~~~- 154 (319)
T PRK08769 89 LRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAI-------------NRAACNALLKTLEEPSPGRYLWLISAQPA- 154 (319)
T ss_pred ccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhh-------------CHHHHHHHHHHhhCCCCCCeEEEEECChh-
Confidence 0 01123456666665543 35689999999999 778999999999854 555666555432
Q ss_pred HhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHH
Q 007723 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495 (591)
Q Consensus 436 ~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r 495 (591)
.+-++++|||+.+.|..|+.++..+.|.. .+ ++++....++.++.+
T Consensus 155 ----~lLpTIrSRCq~i~~~~~~~~~~~~~L~~--------~~--~~~~~a~~~~~l~~G 200 (319)
T PRK08769 155 ----RLPATIRSRCQRLEFKLPPAHEALAWLLA--------QG--VSERAAQEALDAARG 200 (319)
T ss_pred ----hCchHHHhhheEeeCCCcCHHHHHHHHHH--------cC--CChHHHHHHHHHcCC
Confidence 36699999999999999999988877742 12 444444455666543
No 172
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.29 E-value=3.2e-11 Score=125.80 Aligned_cols=157 Identities=20% Similarity=0.203 Sum_probs=103.1
Q ss_pred hcCC-CCCeEecCCCCcHHHHHHHHHHHHHhCCCC--ccccC------------ceEEEeehhhhhccccccchHHHHHH
Q 007723 308 RRTK-NNPILLGESGVGKTAIAEGLAIRIVQAEVP--VFLLS------------KRIMSLDMGLLMAGAKERGELEARVT 372 (591)
Q Consensus 308 ~~~~-~~ilL~GppGvGKT~la~~lA~~l~~~~~p--~~~~~------------~~~~~ld~~~l~~g~~~~g~~~~~i~ 372 (591)
+.+. +.+||+||+|+|||++|+.+|+.+.+.... ..... ..++.+.... +.+ .-..+.++
T Consensus 18 ~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~---~~~--~i~id~iR 92 (328)
T PRK05707 18 RGRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEE---ADK--TIKVDQVR 92 (328)
T ss_pred CCCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccC---CCC--CCCHHHHH
Confidence 3444 447899999999999999999999764210 00001 1233332110 000 11124466
Q ss_pred HHHHHHHh----cCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccC--CcEEEEecCChhHHHhhhcccHHHH
Q 007723 373 TLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQCIASTTQDEHRTQFEKDKALA 446 (591)
Q Consensus 373 ~i~~~~~~----~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~--g~v~lI~att~~e~~~~~~~d~aL~ 446 (591)
.+.+.+.. .+..|++||++|.| +.+++|.|++.||+ +++.+|.+|+... .+.++++
T Consensus 93 ~l~~~~~~~~~~~~~kv~iI~~a~~m-------------~~~aaNaLLK~LEEPp~~~~fiL~t~~~~-----~ll~TI~ 154 (328)
T PRK05707 93 ELVSFVVQTAQLGGRKVVLIEPAEAM-------------NRNAANALLKSLEEPSGDTVLLLISHQPS-----RLLPTIK 154 (328)
T ss_pred HHHHHHhhccccCCCeEEEECChhhC-------------CHHHHHHHHHHHhCCCCCeEEEEEECChh-----hCcHHHH
Confidence 66665543 45778999999999 77899999999986 4677777666643 3679999
Q ss_pred ccCcceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHH
Q 007723 447 RRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495 (591)
Q Consensus 447 ~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r 495 (591)
|||+.+.|.+|+.++..+.|.... + ..+++....++.++.+
T Consensus 155 SRc~~~~~~~~~~~~~~~~L~~~~-------~-~~~~~~~~~~l~la~G 195 (328)
T PRK05707 155 SRCQQQACPLPSNEESLQWLQQAL-------P-ESDERERIELLTLAGG 195 (328)
T ss_pred hhceeeeCCCcCHHHHHHHHHHhc-------c-cCChHHHHHHHHHcCC
Confidence 999999999999999888875321 1 2344445555555543
No 173
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.28 E-value=1.8e-11 Score=125.83 Aligned_cols=173 Identities=14% Similarity=0.148 Sum_probs=109.9
Q ss_pred cCCcHHHHHHHHHHHHhcCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhccccccchH----
Q 007723 292 VIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGEL---- 367 (591)
Q Consensus 292 vvG~~~~i~~l~~~L~~~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~~~~g~~---- 367 (591)
++=..+..+.++..+.. ..+++|.||||||||++++.+|..+ +.+++.+++...+......|..
T Consensus 47 y~f~~~~~~~vl~~l~~--~~~ilL~G~pGtGKTtla~~lA~~l----------~~~~~rV~~~~~l~~~DliG~~~~~l 114 (327)
T TIGR01650 47 YLFDKATTKAICAGFAY--DRRVMVQGYHGTGKSTHIEQIAARL----------NWPCVRVNLDSHVSRIDLVGKDAIVL 114 (327)
T ss_pred ccCCHHHHHHHHHHHhc--CCcEEEEeCCCChHHHHHHHHHHHH----------CCCeEEEEecCCCChhhcCCCceeec
Confidence 33344455556655543 5689999999999999999999998 4445544433222111111100
Q ss_pred ------HHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccC----------------CcEE
Q 007723 368 ------EARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR----------------GELQ 425 (591)
Q Consensus 368 ------~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~----------------g~v~ 425 (591)
.......+..+. ..+.+|++||++.. ..+.++.|..+|+. ..++
T Consensus 115 ~~g~~~~~f~~GpL~~A~-~~g~illlDEin~a-------------~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~Fr 180 (327)
T TIGR01650 115 KDGKQITEFRDGILPWAL-QHNVALCFDEYDAG-------------RPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFR 180 (327)
T ss_pred cCCcceeEEecCcchhHH-hCCeEEEechhhcc-------------CHHHHHHHHHHhccCCeEEECCCceEecCCCCeE
Confidence 000111222222 24578999999988 45556655544441 2478
Q ss_pred EEecCChhH-------HHhhhcccHHHHccCcc-eeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhH
Q 007723 426 CIASTTQDE-------HRTQFEKDKALARRFQP-VLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSA 494 (591)
Q Consensus 426 lI~att~~e-------~~~~~~~d~aL~~Rf~~-i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~ 494 (591)
+|+|+|+.+ |.....++.++.+||.. +.+..|+.++..+||......+ .-..+++.++++++++.
T Consensus 181 viAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~Yp~~e~E~~Il~~~~~~~----~~~~~~~i~~~mV~la~ 253 (327)
T TIGR01650 181 LFATANTIGLGDTTGLYHGTQQINQAQMDRWSIVTTLNYLEHDNEAAIVLAKAKGF----DDTEGKDIINAMVRVAD 253 (327)
T ss_pred EEEeeCCCCcCCCCcceeeeecCCHHHHhheeeEeeCCCCCHHHHHHHHHhhccCC----CccchHHHHHHHHHHHH
Confidence 999999876 77778889999999975 6899999999999986543221 11124566777777663
No 174
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.27 E-value=7.5e-12 Score=131.92 Aligned_cols=185 Identities=21% Similarity=0.309 Sum_probs=128.0
Q ss_pred CCCccCCcHHHHHHHHHHHHh--cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhh-------
Q 007723 288 LIDPVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM------- 358 (591)
Q Consensus 288 ~~~~vvG~~~~i~~l~~~L~~--~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~------- 358 (591)
.+..+||++..+..+++.+.. ++..+|||.|++||||..+|++|++...+.+ ++++.+|++++-
T Consensus 221 ~~~~iIG~S~am~~ll~~i~~VA~Sd~tVLi~GETGtGKElvAraIH~~S~R~~-------kPfV~~NCAAlPesLlESE 293 (550)
T COG3604 221 EVGGIIGRSPAMRQLLKEIEVVAKSDSTVLIRGETGTGKELVARAIHQLSPRRD-------KPFVKLNCAALPESLLESE 293 (550)
T ss_pred ccccceecCHHHHHHHHHHHHHhcCCCeEEEecCCCccHHHHHHHHHhhCcccC-------CCceeeeccccchHHHHHH
Confidence 566899999999999887654 6678899999999999999999999876554 455555555432
Q ss_pred -ccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCC-------------cE
Q 007723 359 -AGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-------------EL 424 (591)
Q Consensus 359 -~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g-------------~v 424 (591)
.|. .+|.|...+..-.....-++++.||+|||..| ...+|..|+.+|..| .|
T Consensus 294 LFGH-eKGAFTGA~~~r~GrFElAdGGTLFLDEIGel-------------PL~lQaKLLRvLQegEieRvG~~r~ikVDV 359 (550)
T COG3604 294 LFGH-EKGAFTGAINTRRGRFELADGGTLFLDEIGEL-------------PLALQAKLLRVLQEGEIERVGGDRTIKVDV 359 (550)
T ss_pred Hhcc-cccccccchhccCcceeecCCCeEechhhccC-------------CHHHHHHHHHHHhhcceeecCCCceeEEEE
Confidence 332 34544444433333333467899999999999 788899999888754 47
Q ss_pred EEEecCChhHHHhh--hcccHHHHccCcceeecCCCH----HHHHHHHHHHHHHHHhhcC---CCCcHHHHHHHHHHh
Q 007723 425 QCIASTTQDEHRTQ--FEKDKALARRFQPVLISEPSQ----EDAVRILLGLREKYEAHHN---CKFTLEAINAAVHLS 493 (591)
Q Consensus 425 ~lI~att~~e~~~~--~~~d~aL~~Rf~~i~i~~p~~----~e~~~iL~~~~~~~~~~~~---i~i~~~al~~l~~~s 493 (591)
++|+|||.+-.... -+.-..|.-|+.++.+..|.. +++.-....+++++..+.+ +.+++++++.+..+.
T Consensus 360 RiIAATNRDL~~~V~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~y~ 437 (550)
T COG3604 360 RVIAATNRDLEEMVRDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSSYE 437 (550)
T ss_pred EEEeccchhHHHHHHcCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHcCC
Confidence 99999998732111 112244555888877777765 3433344445555544444 578999999888764
No 175
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=99.27 E-value=3e-11 Score=137.48 Aligned_cols=253 Identities=14% Similarity=0.143 Sum_probs=156.7
Q ss_pred CccCCcHHHHHHHHHHHHhcC---------------------CCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCce
Q 007723 290 DPVIGRETEIQRIIQILCRRT---------------------KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKR 348 (591)
Q Consensus 290 ~~vvG~~~~i~~l~~~L~~~~---------------------~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~ 348 (591)
..++|++...+.+.-.|.... ..|+||+|+||||||.+|+.+++...... +..+..
T Consensus 450 P~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~---ytsG~~ 526 (915)
T PTZ00111 450 PSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSI---YTSGKS 526 (915)
T ss_pred CeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccc---cCCCCC
Confidence 457899887777665553321 12899999999999999999998643221 111223
Q ss_pred EEEeehhhhhc-cccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCC-----
Q 007723 349 IMSLDMGLLMA-GAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG----- 422 (591)
Q Consensus 349 ~~~ld~~~l~~-g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g----- 422 (591)
+..+++..... -....|+|.... ..+..+.+++++|||++.+ ....+..|..+|+.+
T Consensus 527 ~s~vgLTa~~~~~d~~tG~~~le~----GaLvlAdgGtL~IDEidkm-------------s~~~Q~aLlEaMEqqtIsI~ 589 (915)
T PTZ00111 527 SSSVGLTASIKFNESDNGRAMIQP----GAVVLANGGVCCIDELDKC-------------HNESRLSLYEVMEQQTVTIA 589 (915)
T ss_pred CccccccchhhhcccccCcccccC----CcEEEcCCCeEEecchhhC-------------CHHHHHHHHHHHhCCEEEEe
Confidence 33333222211 000112221000 0112356789999999999 566777777777643
Q ss_pred ----------cEEEEecCChhHHH--------hhhcccHHHHccCcc--eeecCCCHHHHHHHHHHHHHHHHhhc-----
Q 007723 423 ----------ELQCIASTTQDEHR--------TQFEKDKALARRFQP--VLISEPSQEDAVRILLGLREKYEAHH----- 477 (591)
Q Consensus 423 ----------~v~lI~att~~e~~--------~~~~~d~aL~~Rf~~--i~i~~p~~~e~~~iL~~~~~~~~~~~----- 477 (591)
.+.+|+++||..-+ ..+.+.++|.+||+. +.+..|+.+....+..+++..+...|
T Consensus 590 KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~~~D~~lA~hI~~~~~~~h~~~~~ 669 (915)
T PTZ00111 590 KAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQDTDQLISLSIAKDFLLPHMTGSG 669 (915)
T ss_pred cCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEecCCCChHHHHHHHHHHHHhhccccccccc
Confidence 46899999985321 345678999999984 67788888877777777664321100
Q ss_pred ------------------------CCCCcHHHHHHHHHHhHHhhhcCCCcHHHHHHHHHHhhHhhhhhh-----------
Q 007723 478 ------------------------NCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELF----------- 522 (591)
Q Consensus 478 ------------------------~i~i~~~al~~l~~~s~r~i~~~~lp~~ai~lld~a~a~~~~~~~----------- 522 (591)
-..++.+.+..-+.++++++.- .+++.|.++|.+.....|-...
T Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lLrkYI~YAR~~~~P-~Ls~eA~~~i~~~Yv~mR~~~~~~~~~~~~~~~ 748 (915)
T PTZ00111 670 NDEDTYDRSNTMHVEDESLRSEKDYNKNDLDMLRMYIKFSKLHCFP-KLSDEAKKVITREYVKMRQGNFQTSNLDELEHA 748 (915)
T ss_pred ccccchhccccccccccccccccccCCCCHHHHHHHHHHHhccCCC-CCCHHHHHHHHHHHHHHhhhhcccccccccccc
Confidence 0125677788888888765432 3678888888776554443110
Q ss_pred --------------cc--ch-hhhhhhhcCChHH-HHHHHHHHhhcchHHHHhhchhhH
Q 007723 523 --------------KR--KK-EQQTCILSKPPDD-YWQEIRTVQAMHEVVQGSRLKYDD 563 (591)
Q Consensus 523 --------------~~--~~-~~~i~~l~~~~~~-~~~~~~~~~~~~d~~~a~~~~~~~ 563 (591)
.. +. ..+.++|...-++ +.......|+.+|++.|.++...-
T Consensus 749 ~~~~~~~~~~~~~~~~~i~iT~RqLEsLIRLsEA~AK~rLs~~Vt~~Dv~~Ai~L~~~s 807 (915)
T PTZ00111 749 QEDDDDDLYYQSSGTRMIYVSSRMISSIIRISVSLARMRLSTVVTPADALQAVQIVKSS 807 (915)
T ss_pred ccccccccccccccCCcccccHHHHHHHHHHHHHHhhhcCcCcccHHHHHHHHHHHHHH
Confidence 00 11 1445555555556 566677789999999999986543
No 176
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.27 E-value=5.6e-11 Score=136.58 Aligned_cols=194 Identities=20% Similarity=0.320 Sum_probs=125.8
Q ss_pred hccccccc--CCCCccCCcHHHHHHHHHHHHh--cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeeh
Q 007723 279 DLTARASE--ELIDPVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (591)
Q Consensus 279 ~l~~~~r~--~~~~~vvG~~~~i~~l~~~L~~--~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~ 354 (591)
.+++.... ..|++++|++..++.+.+.+.+ ....+++|+||+|||||++|++|+...... +.+++.+|+
T Consensus 363 ~lt~~L~~~n~~~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~-------~~~~v~i~c 435 (686)
T PRK15429 363 ALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRN-------NRRMVKMNC 435 (686)
T ss_pred HHHHhhhhccccccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCCC-------CCCeEEEec
Confidence 34444443 4688999999999998877665 455689999999999999999999876432 456666666
Q ss_pred hhhhc--------cccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCC----
Q 007723 355 GLLMA--------GAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG---- 422 (591)
Q Consensus 355 ~~l~~--------g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g---- 422 (591)
..+.. |. ..|.+..........+..+.+++||||||+.| ..+.+..|...++.+
T Consensus 436 ~~~~~~~~~~~lfg~-~~~~~~g~~~~~~g~le~a~~GtL~Ldei~~L-------------~~~~Q~~L~~~l~~~~~~~ 501 (686)
T PRK15429 436 AAMPAGLLESDLFGH-ERGAFTGASAQRIGRFELADKSSLFLDEVGDM-------------PLELQPKLLRVLQEQEFER 501 (686)
T ss_pred ccCChhHhhhhhcCc-ccccccccccchhhHHHhcCCCeEEEechhhC-------------CHHHHHHHHHHHHhCCEEe
Confidence 54421 11 11111111111122233466789999999999 677788777776532
Q ss_pred ---------cEEEEecCChhHHH--hhhcccHHHHccCcceeecCCCHHHHH----HHHHHHHHHHHhhcC--C-CCcHH
Q 007723 423 ---------ELQCIASTTQDEHR--TQFEKDKALARRFQPVLISEPSQEDAV----RILLGLREKYEAHHN--C-KFTLE 484 (591)
Q Consensus 423 ---------~v~lI~att~~e~~--~~~~~d~aL~~Rf~~i~i~~p~~~e~~----~iL~~~~~~~~~~~~--i-~i~~~ 484 (591)
.+++|++|+.+-.. ..-.+...|..|+..+.|..|+..++. .++..+..++...++ + .++++
T Consensus 502 ~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~ 581 (686)
T PRK15429 502 LGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAE 581 (686)
T ss_pred CCCCCcccceEEEEEeCCCCHHHHHHcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHH
Confidence 46899998875321 112344667778887777777764444 444555555544433 2 48999
Q ss_pred HHHHHHHHh
Q 007723 485 AINAAVHLS 493 (591)
Q Consensus 485 al~~l~~~s 493 (591)
+++.+..+.
T Consensus 582 al~~L~~y~ 590 (686)
T PRK15429 582 TLRTLSNME 590 (686)
T ss_pred HHHHHHhCC
Confidence 998887763
No 177
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.26 E-value=1.1e-11 Score=130.38 Aligned_cols=207 Identities=20% Similarity=0.285 Sum_probs=133.1
Q ss_pred cCCCCccCCcHHHHHHHHHHHHh--cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhcccc-
Q 007723 286 EELIDPVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAK- 362 (591)
Q Consensus 286 ~~~~~~vvG~~~~i~~l~~~L~~--~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~~- 362 (591)
...++.+||.+...+++++.+.. +...+++++|++||||+.+|+.|+...... ...+++.++++.+.....
T Consensus 74 ~~~~~~LIG~~~~~~~~~eqik~~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~------~~~PFI~~NCa~~~en~~~ 147 (403)
T COG1221 74 SEALDDLIGESPSLQELREQIKAYAPSGLPVLIIGETGTGKELFARLIHALSARR------AEAPFIAFNCAAYSENLQE 147 (403)
T ss_pred chhhhhhhccCHHHHHHHHHHHhhCCCCCcEEEecCCCccHHHHHHHHHHhhhcc------cCCCEEEEEHHHhCcCHHH
Confidence 34577899999999998887766 556789999999999999999999444321 255677777765432110
Q ss_pred ------ccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCC-------------c
Q 007723 363 ------ERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-------------E 423 (591)
Q Consensus 363 ------~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g-------------~ 423 (591)
..|.|......-...+..+++++||+||||.| ....+..|+.+|+.| +
T Consensus 148 ~eLFG~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~L-------------P~~~Q~kLl~~le~g~~~rvG~~~~~~~d 214 (403)
T COG1221 148 AELFGHEKGAFTGAQGGKAGLFEQANGGTLFLDEIHRL-------------PPEGQEKLLRVLEEGEYRRVGGSQPRPVD 214 (403)
T ss_pred HHHhccccceeecccCCcCchheecCCCEEehhhhhhC-------------CHhHHHHHHHHHHcCceEecCCCCCcCCC
Confidence 01111111111111223467899999999999 677888888888754 4
Q ss_pred EEEEecCChhHHHhhhcccHHHHccCcceeecCCCH----HHHHHHHHHHHHHHHhhcCCCC---cHHHHHHHHHHh-HH
Q 007723 424 LQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQ----EDAVRILLGLREKYEAHHNCKF---TLEAINAAVHLS-AR 495 (591)
Q Consensus 424 v~lI~att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~----~e~~~iL~~~~~~~~~~~~i~i---~~~al~~l~~~s-~r 495 (591)
|++|+|||.+--+....- ..|.+|+.++.|..|+. +|+..++..+...+....+..+ +++++..+..+. .+
T Consensus 215 VRli~AT~~~l~~~~~~g-~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~y~~pG 293 (403)
T COG1221 215 VRLICATTEDLEEAVLAG-ADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLAYDWPG 293 (403)
T ss_pred ceeeeccccCHHHHHHhh-cchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCC
Confidence 789999998753332211 36777777777777776 4555555566666665555543 346666666553 11
Q ss_pred hhhcCCCcHHHHHHHHHHhhHhh
Q 007723 496 YISDRYLPDKAIDLVDEAGSRAH 518 (591)
Q Consensus 496 ~i~~~~lp~~ai~lld~a~a~~~ 518 (591)
.+ +.-.++++.+|+.+.
T Consensus 294 Ni------rELkN~Ve~~~~~~~ 310 (403)
T COG1221 294 NI------RELKNLVERAVAQAS 310 (403)
T ss_pred cH------HHHHHHHHHHHHHhc
Confidence 11 234557777777654
No 178
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=99.26 E-value=1.2e-10 Score=121.79 Aligned_cols=169 Identities=14% Similarity=0.133 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHHhcCCCC-CeEecCCCCcHHHHHHHHHHHHHhCCCCc--ccc------------CceEEEeehhhhhcc
Q 007723 296 ETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPV--FLL------------SKRIMSLDMGLLMAG 360 (591)
Q Consensus 296 ~~~i~~l~~~L~~~~~~~-ilL~GppGvGKT~la~~lA~~l~~~~~p~--~~~------------~~~~~~ld~~~l~~g 360 (591)
+...+++.+.+...+.+| +||+||+|+||+++|.++|+.+.+..... ... ...++.+... +
T Consensus 8 ~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~----~ 83 (334)
T PRK07993 8 RPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPE----K 83 (334)
T ss_pred hHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecc----c
Confidence 456778888888766555 56899999999999999999997632110 000 1122222211 0
Q ss_pred ccccchHHHHHHHHHHHHH----hcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccC--CcEEEEecCChhH
Q 007723 361 AKERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQCIASTTQDE 434 (591)
Q Consensus 361 ~~~~g~~~~~i~~i~~~~~----~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~--g~v~lI~att~~e 434 (591)
.+ ..-..+.++.+.+.+. .++..|+|||++|.| +..++|.|++.||+ +..++|..|...+
T Consensus 84 ~~-~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m-------------~~~AaNaLLKtLEEPp~~t~fiL~t~~~~ 149 (334)
T PRK07993 84 GK-SSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALL-------------TDAAANALLKTLEEPPENTWFFLACREPA 149 (334)
T ss_pred cc-ccCCHHHHHHHHHHHhhccccCCceEEEEcchHhh-------------CHHHHHHHHHHhcCCCCCeEEEEEECChh
Confidence 00 0011334556555543 356789999999999 78899999999985 3556666555432
Q ss_pred HHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHh
Q 007723 435 HRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (591)
Q Consensus 435 ~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~ 496 (591)
.+-++++|||+.+.+.+|+.++..+.|.. ...++++....++.++.+.
T Consensus 150 -----~lLpTIrSRCq~~~~~~~~~~~~~~~L~~---------~~~~~~~~a~~~~~la~G~ 197 (334)
T PRK07993 150 -----RLLATLRSRCRLHYLAPPPEQYALTWLSR---------EVTMSQDALLAALRLSAGA 197 (334)
T ss_pred -----hChHHHHhccccccCCCCCHHHHHHHHHH---------ccCCCHHHHHHHHHHcCCC
Confidence 46699999999999999999988777742 1235566566666666543
No 179
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.25 E-value=2.5e-11 Score=132.45 Aligned_cols=196 Identities=18% Similarity=0.182 Sum_probs=134.5
Q ss_pred hchhcccccccCCCCccCCcHHHHHHHHHHHHh----------------------------------cCCCCCeEecCCC
Q 007723 276 FCVDLTARASEELIDPVIGRETEIQRIIQILCR----------------------------------RTKNNPILLGESG 321 (591)
Q Consensus 276 ~~~~l~~~~r~~~~~~vvG~~~~i~~l~~~L~~----------------------------------~~~~~ilL~GppG 321 (591)
.+.=|+++|+|..|.+++|-+..-+.+..+|.. +.+.-+||+||||
T Consensus 257 h~kLWVdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppG 336 (877)
T KOG1969|consen 257 HDKLWVDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPG 336 (877)
T ss_pred CcceeecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCC
Confidence 334689999999999999988877777766532 1112358999999
Q ss_pred CcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhccccccchHHHHHHHHHHHH--H--hcCCeEEEEcCcchhhcC
Q 007723 322 VGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI--Q--KSGDVILFIDEVHTLIGS 397 (591)
Q Consensus 322 vGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~--~--~~~~~ILfIDEi~~L~~~ 397 (591)
-||||||+.+|+.. +..++++++++--.+ ..+.+++..++..= . ...+..|+|||||--
T Consensus 337 lGKTTLAHViAkqa----------GYsVvEINASDeRt~----~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa--- 399 (877)
T KOG1969|consen 337 LGKTTLAHVIAKQA----------GYSVVEINASDERTA----PMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGA--- 399 (877)
T ss_pred CChhHHHHHHHHhc----------CceEEEecccccccH----HHHHHHHHHHHhhccccccCCCcceEEEecccCC---
Confidence 99999999999988 899999998764332 23344444433221 1 146789999999843
Q ss_pred CCCCCCCCCccHHHHHhhcccccC------C-----------------cEEEEecCChhHHHhhhcccHHHHc---cCcc
Q 007723 398 GTVGRGNKGTGLDISNLLKPSLGR------G-----------------ELQCIASTTQDEHRTQFEKDKALAR---RFQP 451 (591)
Q Consensus 398 ~~~~~~~~~~~~~~~n~L~~~le~------g-----------------~v~lI~att~~e~~~~~~~d~aL~~---Rf~~ 451 (591)
...+.+.|+..+.. | .--+||.||.- .-|+|+. -+.+
T Consensus 400 ----------~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdL-------YaPaLR~Lr~~A~i 462 (877)
T KOG1969|consen 400 ----------PRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDL-------YAPALRPLRPFAEI 462 (877)
T ss_pred ----------cHHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCc-------cchhhhhcccceEE
Confidence 22333444333320 0 01244444542 1255543 3457
Q ss_pred eeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhhhcCCCcHHHHHHHHHHhh
Q 007723 452 VLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGS 515 (591)
Q Consensus 452 i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i~~~~lp~~ai~lld~a~a 515 (591)
|.|.+|+...+++.|+.++.+. ++..+..++..+++++...++. .|+-|.-.+.
T Consensus 463 i~f~~p~~s~Lv~RL~~IC~rE----~mr~d~~aL~~L~el~~~DIRs------CINtLQfLa~ 516 (877)
T KOG1969|consen 463 IAFVPPSQSRLVERLNEICHRE----NMRADSKALNALCELTQNDIRS------CINTLQFLAS 516 (877)
T ss_pred EEecCCChhHHHHHHHHHHhhh----cCCCCHHHHHHHHHHhcchHHH------HHHHHHHHHH
Confidence 9999999999999999998877 9999999999999999888776 5555554443
No 180
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.25 E-value=2.3e-11 Score=134.10 Aligned_cols=183 Identities=18% Similarity=0.234 Sum_probs=120.5
Q ss_pred CCCCccCCcHHHHHHHHHHHHh--cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhh-------
Q 007723 287 ELIDPVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLL------- 357 (591)
Q Consensus 287 ~~~~~vvG~~~~i~~l~~~L~~--~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l------- 357 (591)
..|++++|++..++++.+.+.+ ....+++|+|++||||+++|++|+...... +.+++.+|+..+
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~-------~~pfv~inC~~l~e~lles 281 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLSGRR-------DFPFVAINCGAIAESLLEA 281 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHhcCcC-------CCCEEEeccccCChhHHHH
Confidence 4688999999999999887764 566789999999999999999999865333 455666666543
Q ss_pred -hccccccchHHHHHH-HHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCCc------------
Q 007723 358 -MAGAKERGELEARVT-TLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGE------------ 423 (591)
Q Consensus 358 -~~g~~~~g~~~~~i~-~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g~------------ 423 (591)
+.|.. .|.|....+ .-...+..+.+++||||||+.| ..++|..|+.+++.+.
T Consensus 282 eLFG~~-~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~L-------------p~~~Q~~Ll~~L~~~~~~r~g~~~~~~~ 347 (526)
T TIGR02329 282 ELFGYE-EGAFTGARRGGRTGLIEAAHRGTLFLDEIGEM-------------PLPLQTRLLRVLEEREVVRVGGTEPVPV 347 (526)
T ss_pred HhcCCc-ccccccccccccccchhhcCCceEEecChHhC-------------CHHHHHHHHHHHhcCcEEecCCCceeee
Confidence 22211 111111100 0001122356789999999999 7788888888886543
Q ss_pred -EEEEecCChhHHHh--hhcccHHHHccCcceeecCCCHH----HHHHHHHHHHHHHHhhcCCCCcHHHHHHHH
Q 007723 424 -LQCIASTTQDEHRT--QFEKDKALARRFQPVLISEPSQE----DAVRILLGLREKYEAHHNCKFTLEAINAAV 490 (591)
Q Consensus 424 -v~lI~att~~e~~~--~~~~d~aL~~Rf~~i~i~~p~~~----e~~~iL~~~~~~~~~~~~i~i~~~al~~l~ 490 (591)
+++|++|+.+-... .-.....|..|+..+.+..|+.. ++..++..++.++...+++.+++++++.+.
T Consensus 348 dvRiIaat~~~l~~~v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~ 421 (526)
T TIGR02329 348 DVRVVAATHCALTTAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVLA 421 (526)
T ss_pred cceEEeccCCCHHHHhhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHhH
Confidence 48999888763211 11234566778887777777664 444455555555555556778888887743
No 181
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.25 E-value=2.6e-12 Score=123.42 Aligned_cols=134 Identities=21% Similarity=0.260 Sum_probs=73.3
Q ss_pred CCCccCCcHHHHHHHHHHHHhcCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeeh----hhhhccccc
Q 007723 288 LIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM----GLLMAGAKE 363 (591)
Q Consensus 288 ~~~~vvG~~~~i~~l~~~L~~~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~----~~l~~g~~~ 363 (591)
.|.+|+||+...+.+.-.... .+|++|+||||||||++|+.+...+..-...+.+.-..++.+.. ..++....+
T Consensus 1 Df~dI~GQe~aKrAL~iAAaG--~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~~~~~~~~~~~Pf 78 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAAG--GHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGLGPDEGLIRQRPF 78 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHHC--C--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---S---EEEE---E
T ss_pred ChhhhcCcHHHHHHHHHHHcC--CCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccCCCCCceecCCCc
Confidence 378999999888887766553 68999999999999999999998764322111111111111100 000000000
Q ss_pred cc-hHHHHHHHHH--------HHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCC------------
Q 007723 364 RG-ELEARVTTLI--------SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG------------ 422 (591)
Q Consensus 364 ~g-~~~~~i~~i~--------~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g------------ 422 (591)
+- .-......++ .++..++++|||+||+..+ ...+.+.|+..++.+
T Consensus 79 r~phhs~s~~~liGgg~~~~PGeislAh~GVLflDE~~ef-------------~~~vld~Lr~ple~g~v~i~R~~~~~~ 145 (206)
T PF01078_consen 79 RAPHHSASEAALIGGGRPPRPGEISLAHRGVLFLDELNEF-------------DRSVLDALRQPLEDGEVTISRAGGSVT 145 (206)
T ss_dssp EEE-TT--HHHHHEEGGGEEE-CGGGGTTSEEEECETTTS--------------HHHHHHHHHHHHHSBEEEEETTEEEE
T ss_pred ccCCCCcCHHHHhCCCcCCCcCHHHHhcCCEEEechhhhc-------------CHHHHHHHHHHHHCCeEEEEECCceEE
Confidence 00 0000011111 1233478899999999998 778999999998866
Q ss_pred ---cEEEEecCChhHHH
Q 007723 423 ---ELQCIASTTQDEHR 436 (591)
Q Consensus 423 ---~v~lI~att~~e~~ 436 (591)
++++|+|+|+-+..
T Consensus 146 ~Pa~f~lv~a~NPcpCG 162 (206)
T PF01078_consen 146 YPARFLLVAAMNPCPCG 162 (206)
T ss_dssp EB--EEEEEEE-S----
T ss_pred EecccEEEEEecccccc
Confidence 46899999987654
No 182
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.23 E-value=3.4e-11 Score=133.55 Aligned_cols=185 Identities=22% Similarity=0.292 Sum_probs=124.1
Q ss_pred CCCccCCcHHHHHHHHHHHHh--cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhh-------
Q 007723 288 LIDPVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM------- 358 (591)
Q Consensus 288 ~~~~vvG~~~~i~~l~~~L~~--~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~------- 358 (591)
.+..+||++..++++.+.+.+ ....+|+|+|++||||+++|++|+...... +.+++.+|+..+-
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~-------~~p~v~v~c~~~~~~~~e~~ 257 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRA-------DKPLVYLNCAALPESLAESE 257 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCcC-------CCCeEEEEcccCChHHHHHH
Confidence 467899999999999888776 556789999999999999999999876433 4466667765432
Q ss_pred -ccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCC-------------cE
Q 007723 359 -AGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-------------EL 424 (591)
Q Consensus 359 -~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g-------------~v 424 (591)
.|.. .|.+..........+..+.+++||||||+.| ..+++..|..+++.+ .+
T Consensus 258 lfG~~-~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L-------------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~ 323 (509)
T PRK05022 258 LFGHV-KGAFTGAISNRSGKFELADGGTLFLDEIGEL-------------PLALQAKLLRVLQYGEIQRVGSDRSLRVDV 323 (509)
T ss_pred hcCcc-ccccCCCcccCCcchhhcCCCEEEecChhhC-------------CHHHHHHHHHHHhcCCEeeCCCCcceecce
Confidence 1110 1111100000001123456789999999999 677888888777543 46
Q ss_pred EEEecCChhHHH--hhhcccHHHHccCcceeecCCCH----HHHHHHHHHHHHHHHhhc---CCCCcHHHHHHHHHHh
Q 007723 425 QCIASTTQDEHR--TQFEKDKALARRFQPVLISEPSQ----EDAVRILLGLREKYEAHH---NCKFTLEAINAAVHLS 493 (591)
Q Consensus 425 ~lI~att~~e~~--~~~~~d~aL~~Rf~~i~i~~p~~----~e~~~iL~~~~~~~~~~~---~i~i~~~al~~l~~~s 493 (591)
++|++|+.+--. ..-.....|..|+..+.|..|+. +++..++..++.++...+ .+.+++++++.+..+.
T Consensus 324 RiI~~t~~~l~~~~~~~~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~ 401 (509)
T PRK05022 324 RVIAATNRDLREEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAYD 401 (509)
T ss_pred EEEEecCCCHHHHHHcCCccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCC
Confidence 899998875321 11234577888888777777765 445555555555554443 3679999999988774
No 183
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.23 E-value=1.1e-10 Score=133.30 Aligned_cols=183 Identities=21% Similarity=0.280 Sum_probs=123.3
Q ss_pred CCCCccCCcHHHHHHHHHHHHh--cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhh------
Q 007723 287 ELIDPVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM------ 358 (591)
Q Consensus 287 ~~~~~vvG~~~~i~~l~~~L~~--~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~------ 358 (591)
..|+.++|.+..++++++.+.+ ....+++|+|++||||+++|++|++..... +.+++.+|+..+.
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~-------~~pfv~vnc~~~~~~~~~~ 394 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESERA-------AGPYIAVNCQLYPDEALAE 394 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhCCcc-------CCCeEEEECCCCChHHHHH
Confidence 3689999999999998887765 456779999999999999999999876432 4566777765432
Q ss_pred --ccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCC-------------c
Q 007723 359 --AGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-------------E 423 (591)
Q Consensus 359 --~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g-------------~ 423 (591)
.|.. .+... ......+..+.+++||||||+.| ..++|..|+.+++.+ .
T Consensus 395 elfg~~-~~~~~---~~~~g~~~~a~~GtL~ldei~~l-------------~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~ 457 (638)
T PRK11388 395 EFLGSD-RTDSE---NGRLSKFELAHGGTLFLEKVEYL-------------SPELQSALLQVLKTGVITRLDSRRLIPVD 457 (638)
T ss_pred HhcCCC-CcCcc---CCCCCceeECCCCEEEEcChhhC-------------CHHHHHHHHHHHhcCcEEeCCCCceEEee
Confidence 1210 00000 00000122356789999999999 778888888887644 4
Q ss_pred EEEEecCChhHHH--hhhcccHHHHccCcceeecCCCHH----HHHHHHHHHHHHHHhhc--CCCCcHHHHHHHHHHh
Q 007723 424 LQCIASTTQDEHR--TQFEKDKALARRFQPVLISEPSQE----DAVRILLGLREKYEAHH--NCKFTLEAINAAVHLS 493 (591)
Q Consensus 424 v~lI~att~~e~~--~~~~~d~aL~~Rf~~i~i~~p~~~----e~~~iL~~~~~~~~~~~--~i~i~~~al~~l~~~s 493 (591)
+++|++|+.+... ..-.....|..|+..+.|..|+.. ++..++..++.++...+ .+.+++++++.+..+.
T Consensus 458 ~riI~~t~~~l~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y~ 535 (638)
T PRK11388 458 VRVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYR 535 (638)
T ss_pred EEEEEeccCCHHHHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHcCC
Confidence 6799998875321 111234667778887777777764 44445555555544333 3578999999998875
No 184
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.22 E-value=5.9e-11 Score=131.77 Aligned_cols=184 Identities=13% Similarity=0.231 Sum_probs=121.8
Q ss_pred ccCCCCccCCcHHHHHHHHHHHHh--cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhh----
Q 007723 285 SEELIDPVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM---- 358 (591)
Q Consensus 285 r~~~~~~vvG~~~~i~~l~~~L~~--~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~---- 358 (591)
....|+.++|.+..++++++.+.+ ....+++|+|++||||+++|++++...... ..+++.+|+..+-
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~-------~~pfv~inca~~~~~~~ 271 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSPRG-------KKPFLALNCASIPDDVV 271 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHhCCCC-------CCCeEEeccccCCHHHH
Confidence 345899999999999988887754 456789999999999999999998765333 3456666665431
Q ss_pred ----ccccccchHHH---HHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCC---------
Q 007723 359 ----AGAKERGELEA---RVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG--------- 422 (591)
Q Consensus 359 ----~g~~~~g~~~~---~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g--------- 422 (591)
.|.. .|.+.. .-..+| ..+.+++||||||+.| +...|..|..+++.+
T Consensus 272 e~elFG~~-~~~~~~~~~~~~g~~---e~a~~GtL~LdeI~~L-------------~~~~Q~~Ll~~l~~~~~~~~g~~~ 334 (520)
T PRK10820 272 ESELFGHA-PGAYPNALEGKKGFF---EQANGGSVLLDEIGEM-------------SPRMQAKLLRFLNDGTFRRVGEDH 334 (520)
T ss_pred HHHhcCCC-CCCcCCcccCCCChh---hhcCCCEEEEeChhhC-------------CHHHHHHHHHHHhcCCcccCCCCc
Confidence 1211 011100 001122 2356789999999999 667788887777543
Q ss_pred ----cEEEEecCChhHH--HhhhcccHHHHccCcceeecCCCHH----HHHHHHHHHHHHHHhhcC---CCCcHHHHHHH
Q 007723 423 ----ELQCIASTTQDEH--RTQFEKDKALARRFQPVLISEPSQE----DAVRILLGLREKYEAHHN---CKFTLEAINAA 489 (591)
Q Consensus 423 ----~v~lI~att~~e~--~~~~~~d~aL~~Rf~~i~i~~p~~~----e~~~iL~~~~~~~~~~~~---i~i~~~al~~l 489 (591)
.+++|++|+.+.- ...-...+.|..|+..+.+..|+.. ++..++..++.++...++ ..+++++++.+
T Consensus 335 ~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L 414 (520)
T PRK10820 335 EVHVDVRVICATQKNLVELVQKGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVL 414 (520)
T ss_pred ceeeeeEEEEecCCCHHHHHHcCCccHHHHhhcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHH
Confidence 4688988876531 1112245778889887777777653 444455555565555554 37899999988
Q ss_pred HHH
Q 007723 490 VHL 492 (591)
Q Consensus 490 ~~~ 492 (591)
..+
T Consensus 415 ~~y 417 (520)
T PRK10820 415 TRY 417 (520)
T ss_pred hcC
Confidence 776
No 185
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.22 E-value=8.4e-11 Score=129.66 Aligned_cols=187 Identities=17% Similarity=0.246 Sum_probs=120.1
Q ss_pred CCCCccCCcHHHHHHHHHHHHh--cCCCCCeEecCCCCcHHHHHHHHHHHHHh-CCCCccccCceEEEeehhhhh-----
Q 007723 287 ELIDPVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQ-AEVPVFLLSKRIMSLDMGLLM----- 358 (591)
Q Consensus 287 ~~~~~vvG~~~~i~~l~~~L~~--~~~~~ilL~GppGvGKT~la~~lA~~l~~-~~~p~~~~~~~~~~ld~~~l~----- 358 (591)
..|++++|++..++++.+.+.+ ....+++|+|++||||+.+|++|++.... ...+..-.+.+|+.+|++.+.
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e~lle 295 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLE 295 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCChhhHH
Confidence 3688999999999999888754 56678999999999999999999987211 010011125677777776542
Q ss_pred ---ccccccchHHHHH----HHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCC---------
Q 007723 359 ---AGAKERGELEARV----TTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG--------- 422 (591)
Q Consensus 359 ---~g~~~~g~~~~~i----~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g--------- 422 (591)
.|.. .|.|.... ..++ ..+.+++||||||+.| ....|..|+.+++.+
T Consensus 296 seLFG~~-~gaftga~~~~~~Gl~---e~A~gGTLfLdeI~~L-------------p~~~Q~kLl~~L~e~~~~r~G~~~ 358 (538)
T PRK15424 296 AELFGYE-EGAFTGSRRGGRAGLF---EIAHGGTLFLDEIGEM-------------PLPLQTRLLRVLEEKEVTRVGGHQ 358 (538)
T ss_pred HHhcCCc-cccccCccccccCCch---hccCCCEEEEcChHhC-------------CHHHHHHHHhhhhcCeEEecCCCc
Confidence 2211 11111100 0122 2356789999999999 778888888888654
Q ss_pred ----cEEEEecCChhHHHh--hhcccHHHHccCcceeecCCCHHHHHH----HHHHHHHHHHhhcCCCCcHHHHHHHH
Q 007723 423 ----ELQCIASTTQDEHRT--QFEKDKALARRFQPVLISEPSQEDAVR----ILLGLREKYEAHHNCKFTLEAINAAV 490 (591)
Q Consensus 423 ----~v~lI~att~~e~~~--~~~~d~aL~~Rf~~i~i~~p~~~e~~~----iL~~~~~~~~~~~~i~i~~~al~~l~ 490 (591)
++++|++|+.+--.. .-.....|..|+..+.+..|+..++.+ ++..++.++....+..++++++..+.
T Consensus 359 ~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~ 436 (538)
T PRK15424 359 PVPVDVRVISATHCDLEEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAPFSAALRQGLQ 436 (538)
T ss_pred eeccceEEEEecCCCHHHHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHhhH
Confidence 348999988763111 112345677788888888887655444 44444444433456677877765443
No 186
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=1.2e-10 Score=116.25 Aligned_cols=192 Identities=23% Similarity=0.313 Sum_probs=121.4
Q ss_pred cCCcHHHHHHHHHHHHh---------------cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhh
Q 007723 292 VIGRETEIQRIIQILCR---------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGL 356 (591)
Q Consensus 292 vvG~~~~i~~l~~~L~~---------------~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~ 356 (591)
+|||+...+.|.-.+++ -.+.|++|+||.|+|||.||+.||+.+ +.+|...|+..
T Consensus 63 VIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~L----------nVPFaiADATt 132 (408)
T COG1219 63 VIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKIL----------NVPFAIADATT 132 (408)
T ss_pred eecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHh----------CCCeeeccccc
Confidence 78888766544322111 135899999999999999999999998 45555566666
Q ss_pred hhccccccch-HHHHHHHHHHHH----HhcCCeEEEEcCcchhhcCCCCCCCCC-CccHHHHHhhcccccC--------C
Q 007723 357 LMAGAKERGE-LEARVTTLISEI----QKSGDVILFIDEVHTLIGSGTVGRGNK-GTGLDISNLLKPSLGR--------G 422 (591)
Q Consensus 357 l~~g~~~~g~-~~~~i~~i~~~~----~~~~~~ILfIDEi~~L~~~~~~~~~~~-~~~~~~~n~L~~~le~--------g 422 (591)
+.- +.|.|+ .+..+..++..+ .++.++|+||||||.+..+........ -...-+|.+|+..++. |
T Consensus 133 LTE-AGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGTvasVPPqG 211 (408)
T COG1219 133 LTE-AGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQG 211 (408)
T ss_pred hhh-ccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCceeccCCCC
Confidence 542 336664 555555555543 346789999999999975532111111 1234577788877751 1
Q ss_pred ---------------cEEEEecCChh-------------------------------HH-H-------hhhcccHHHHcc
Q 007723 423 ---------------ELQCIASTTQD-------------------------------EH-R-------TQFEKDKALARR 448 (591)
Q Consensus 423 ---------------~v~lI~att~~-------------------------------e~-~-------~~~~~d~aL~~R 448 (591)
++.+|+..-.. ++ . -.|.+-|.|.-|
T Consensus 212 GRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vepeDLvkFGLIPEfIGR 291 (408)
T COG1219 212 GRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPEDLVKFGLIPEFIGR 291 (408)
T ss_pred CCCCCccceEEEcccceeEEeccccccHHHHHHHhccCCcccccccccchhhhhhHHHHHHhcChHHHHHcCCcHHHhcc
Confidence 23344322111 00 0 012345677778
Q ss_pred Ccc-eeecCCCHHHHHHHHHH----HHHHHHhhc-----CCCCcHHHHHHHHHHhH
Q 007723 449 FQP-VLISEPSQEDAVRILLG----LREKYEAHH-----NCKFTLEAINAAVHLSA 494 (591)
Q Consensus 449 f~~-i~i~~p~~~e~~~iL~~----~~~~~~~~~-----~i~i~~~al~~l~~~s~ 494 (591)
+-+ ..+.+.+.++++.||.. +...|..-+ .+.++++++..+++.+-
T Consensus 292 lPvia~L~~Lde~aLv~ILtePkNAlvKQYq~Lf~~d~V~L~F~~~AL~~IA~~A~ 347 (408)
T COG1219 292 LPVIATLEELDEDALVQILTEPKNALVKQYQKLFEMDGVELEFTEEALKAIAKKAI 347 (408)
T ss_pred cceeeehhhcCHHHHHHHHhcccHHHHHHHHHHhcccCceEEEcHHHHHHHHHHHH
Confidence 874 57888899999999976 455555422 34689999999998874
No 187
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.21 E-value=3e-10 Score=117.81 Aligned_cols=149 Identities=16% Similarity=0.178 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHhcCCCC-CeEecCCCCcHHHHHHHHHHHHHhCCCCc--ccc------------CceEEEeehhhhhcc
Q 007723 296 ETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPV--FLL------------SKRIMSLDMGLLMAG 360 (591)
Q Consensus 296 ~~~i~~l~~~L~~~~~~~-ilL~GppGvGKT~la~~lA~~l~~~~~p~--~~~------------~~~~~~ld~~~l~~g 360 (591)
....+.+.+.+.+.+.+| +||+||+|+||+++|+.+|+.+.+..... ... ...++.+... .|
T Consensus 8 ~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~---~~ 84 (325)
T PRK06871 8 QPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPI---DN 84 (325)
T ss_pred HHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccc---cC
Confidence 446677888888766554 56899999999999999999997743110 010 1123333211 11
Q ss_pred ccccchHHHHHHHHHHHHHh----cCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccC--CcEEEEecCChhH
Q 007723 361 AKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQCIASTTQDE 434 (591)
Q Consensus 361 ~~~~g~~~~~i~~i~~~~~~----~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~--g~v~lI~att~~e 434 (591)
+.. -.+.++.+.+.+.. .+..|+|||++|.| +..++|.|++.||+ +++.+|.+|+..+
T Consensus 85 -~~I--~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m-------------~~~AaNaLLKtLEEPp~~~~fiL~t~~~~ 148 (325)
T PRK06871 85 -KDI--GVDQVREINEKVSQHAQQGGNKVVYIQGAERL-------------TEAAANALLKTLEEPRPNTYFLLQADLSA 148 (325)
T ss_pred -CCC--CHHHHHHHHHHHhhccccCCceEEEEechhhh-------------CHHHHHHHHHHhcCCCCCeEEEEEECChH
Confidence 111 13345666555542 45689999999999 77899999999985 3566666655532
Q ss_pred HHhhhcccHHHHccCcceeecCCCHHHHHHHHHH
Q 007723 435 HRTQFEKDKALARRFQPVLISEPSQEDAVRILLG 468 (591)
Q Consensus 435 ~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~ 468 (591)
.+.++++|||+.+.+.+|+.++..+.|..
T Consensus 149 -----~llpTI~SRC~~~~~~~~~~~~~~~~L~~ 177 (325)
T PRK06871 149 -----ALLPTIYSRCQTWLIHPPEEQQALDWLQA 177 (325)
T ss_pred -----hCchHHHhhceEEeCCCCCHHHHHHHHHH
Confidence 46699999999999999999998888864
No 188
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.20 E-value=8.9e-11 Score=131.73 Aligned_cols=219 Identities=16% Similarity=0.156 Sum_probs=122.2
Q ss_pred hcCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeeh---hhhhccccccchHHHHHHH---HHH--HHH
Q 007723 308 RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM---GLLMAGAKERGELEARVTT---LIS--EIQ 379 (591)
Q Consensus 308 ~~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~---~~l~~g~~~~g~~~~~i~~---i~~--~~~ 379 (591)
.+...+++|.|+||||||++|++|+..+.. .. .|+.+.. ...+.|.-. ++..+.. .+. .+.
T Consensus 13 ~p~~g~vLl~G~~GtgKs~lar~l~~~~~~-~~-------pfv~i~~~~t~d~L~G~id---l~~~~~~g~~~~~~G~L~ 81 (589)
T TIGR02031 13 DPSLGGVAIRARAGTGKTALARALAEILPP-IM-------PFVELPLGVTEDRLIGGID---VEESLAGGQRVTQPGLLD 81 (589)
T ss_pred CCCcceEEEEcCCCcHHHHHHHHHHHhCCc-CC-------CeEecCcccchhhcccchh---hhhhhhcCcccCCCCCee
Confidence 355779999999999999999999997632 11 2232221 111112110 0000000 000 012
Q ss_pred hcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCC---------------cEEEEecCChhHHHhhhcccHH
Q 007723 380 KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG---------------ELQCIASTTQDEHRTQFEKDKA 444 (591)
Q Consensus 380 ~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g---------------~v~lI~att~~e~~~~~~~d~a 444 (591)
++++++||||||+.+ ...+++.|+..|+.+ .+++|+++++.+.. ..+.++
T Consensus 82 ~A~~GvL~lDEi~rl-------------~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~--g~L~~~ 146 (589)
T TIGR02031 82 EAPRGVLYVDMANLL-------------DDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGG--GGLPDH 146 (589)
T ss_pred eCCCCcEeccchhhC-------------CHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCcccc--CCCCHH
Confidence 356789999999999 778888888888654 36889988886522 357799
Q ss_pred HHccCcc-eeec-CCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhhhcCCCcHHHHHHHHHHhhHhhhhhh
Q 007723 445 LARRFQP-VLIS-EPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELF 522 (591)
Q Consensus 445 L~~Rf~~-i~i~-~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i~~~~lp~~ai~lld~a~a~~~~~~~ 522 (591)
|.+||.. |.+. .|+.++..+|++.....+...+ .........-+..+.+.++.-.+++..++.|-+.+....+.+.
T Consensus 147 LldRf~l~v~~~~~~~~~er~eil~~~~~~~~~~~--~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~ 224 (589)
T TIGR02031 147 LLDRLALHVSLEDVASQDLRVEIVRRERCNEVFRM--NDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGISGH 224 (589)
T ss_pred HHHhccCeeecCCCCCHHHHHHHHHHHHHhhhhhc--chhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCCCc
Confidence 9999984 4444 4567778888877553331111 1122222233333444455555566555544444432222211
Q ss_pred ccchhhhhhhhcCChHH-HHHHHHHHhhcchHHHHhhc
Q 007723 523 KRKKEQQTCILSKPPDD-YWQEIRTVQAMHEVVQGSRL 559 (591)
Q Consensus 523 ~~~~~~~i~~l~~~~~~-~~~~~~~~~~~~d~~~a~~~ 559 (591)
.... .+.+...+ .++.....|+.+|++.|..+
T Consensus 225 Ra~i-----~~~r~ArA~Aal~gr~~V~~~Dv~~a~~l 257 (589)
T TIGR02031 225 RADL-----FAVRAAKAHAALHGRTEVTEEDLKLAVEL 257 (589)
T ss_pred cHHH-----HHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 1111 12222233 45555566777777777766
No 189
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.19 E-value=1.2e-10 Score=105.54 Aligned_cols=143 Identities=24% Similarity=0.332 Sum_probs=89.0
Q ss_pred CCcHHHHHHHHHHHHhcCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhccccccchHHH-HH
Q 007723 293 IGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEA-RV 371 (591)
Q Consensus 293 vG~~~~i~~l~~~L~~~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~~~~g~~~~-~i 371 (591)
+|++.++..+...+......+++++||||+|||++++.+++.+.. .+..++.++................ ..
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 73 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFR-------PGAPFLYLNASDLLEGLVVAELFGHFLV 73 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhc-------CCCCeEEEehhhhhhhhHHHHHhhhhhH
Confidence 477888889988888777788999999999999999999998852 2456677766554322111110000 00
Q ss_pred HHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhccccc----CCcEEEEecCChhHHHhhhcccHHHHc
Q 007723 372 TTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG----RGELQCIASTTQDEHRTQFEKDKALAR 447 (591)
Q Consensus 372 ~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le----~g~v~lI~att~~e~~~~~~~d~aL~~ 447 (591)
...........+.+|+|||++.+... ........+..... ...+.+|++++.... ...++.+.+
T Consensus 74 ~~~~~~~~~~~~~~lilDe~~~~~~~---------~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~---~~~~~~~~~ 141 (151)
T cd00009 74 RLLFELAEKAKPGVLFIDEIDSLSRG---------AQNALLRVLETLNDLRIDRENVRVIGATNRPLL---GDLDRALYD 141 (151)
T ss_pred hHHHHhhccCCCeEEEEeChhhhhHH---------HHHHHHHHHHhcCceeccCCCeEEEEecCcccc---CCcChhHHh
Confidence 11111122346789999999987110 02223333433332 357888888887642 356788999
Q ss_pred cCc-ceee
Q 007723 448 RFQ-PVLI 454 (591)
Q Consensus 448 Rf~-~i~i 454 (591)
||. .+.+
T Consensus 142 r~~~~i~~ 149 (151)
T cd00009 142 RLDIRIVI 149 (151)
T ss_pred hhccEeec
Confidence 995 4444
No 190
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.17 E-value=1.8e-10 Score=108.76 Aligned_cols=142 Identities=22% Similarity=0.322 Sum_probs=88.2
Q ss_pred cCCcHHHHHHHHHHHHh--cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhh--------ccc
Q 007723 292 VIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM--------AGA 361 (591)
Q Consensus 292 vvG~~~~i~~l~~~L~~--~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~--------~g~ 361 (591)
+||.+..++++++.+.+ ....+|+|+|++||||+.+|++|+..... .+.+|+.+|++.+. .|.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r-------~~~pfi~vnc~~~~~~~~e~~LFG~ 73 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSPR-------KNGPFISVNCAALPEELLESELFGH 73 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCSTT-------TTS-EEEEETTTS-HHHHHHHHHEB
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhhc-------ccCCeEEEehhhhhcchhhhhhhcc
Confidence 58899999999888776 55688999999999999999999985532 25678888876542 221
Q ss_pred cccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCC-------------cEEEEe
Q 007723 362 KERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-------------ELQCIA 428 (591)
Q Consensus 362 ~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g-------------~v~lI~ 428 (591)
. .|.+...-..-...+..+.+++||||||+.| ..++|..|+.+|+.+ ++++|+
T Consensus 74 ~-~~~~~~~~~~~~G~l~~A~~GtL~Ld~I~~L-------------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~ 139 (168)
T PF00158_consen 74 E-KGAFTGARSDKKGLLEQANGGTLFLDEIEDL-------------PPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIA 139 (168)
T ss_dssp C-SSSSTTTSSEBEHHHHHTTTSEEEEETGGGS--------------HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEE
T ss_pred c-cccccccccccCCceeeccceEEeecchhhh-------------HHHHHHHHHHHHhhchhccccccccccccceEEe
Confidence 1 0100000000002233567899999999999 788898888888632 579999
Q ss_pred cCChhHHH--hhhcccHHHHccCcceee
Q 007723 429 STTQDEHR--TQFEKDKALARRFQPVLI 454 (591)
Q Consensus 429 att~~e~~--~~~~~d~aL~~Rf~~i~i 454 (591)
+|+.+-.. ..-...+.|..|+..+.+
T Consensus 140 st~~~l~~~v~~g~fr~dLy~rL~~~~i 167 (168)
T PF00158_consen 140 STSKDLEELVEQGRFREDLYYRLNVFTI 167 (168)
T ss_dssp EESS-HHHHHHTTSS-HHHHHHHTTEEE
T ss_pred ecCcCHHHHHHcCCChHHHHHHhceEec
Confidence 99865311 112234566666665543
No 191
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.17 E-value=2.5e-10 Score=112.66 Aligned_cols=118 Identities=18% Similarity=0.131 Sum_probs=86.6
Q ss_pred CCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCC-cEEEEecCChhH--------HHhhhcccHHHHccCcce
Q 007723 382 GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-ELQCIASTTQDE--------HRTQFEKDKALARRFQPV 452 (591)
Q Consensus 382 ~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g-~v~lI~att~~e--------~~~~~~~d~aL~~Rf~~i 452 (591)
-++||||||+|+| ..+.+..|...++.. .-++|.++|... ......+.+.|.+|+.+|
T Consensus 296 vPGVLFIDEVhML-------------DiEcFTyL~kalES~iaPivifAsNrG~~~irGt~d~~sPhGip~dllDRl~Ii 362 (456)
T KOG1942|consen 296 VPGVLFIDEVHML-------------DIECFTYLHKALESPIAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLDRLLII 362 (456)
T ss_pred cCcceEeeehhhh-------------hhHHHHHHHHHhcCCCCceEEEecCCcceeecCCcCCCCCCCCCHHHhhheeEE
Confidence 3789999999999 788888888888753 345566655431 112345678999999999
Q ss_pred eecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhhhcCCCcHHHHHHHHHHhhHhhhhh
Q 007723 453 LISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIEL 521 (591)
Q Consensus 453 ~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i~~~~lp~~ai~lld~a~a~~~~~~ 521 (591)
....++.++..+|++..+... ++.++++++..+.+...+. ..+-+++||--+...++..+
T Consensus 363 rt~~y~~~e~r~Ii~~Ra~~E----~l~~~e~a~~~l~~~gt~t-----sLRy~vqLl~p~~~~ak~~g 422 (456)
T KOG1942|consen 363 RTLPYDEEEIRQIIKIRAQVE----GLQVEEEALDLLAEIGTST-----SLRYAVQLLTPASILAKTNG 422 (456)
T ss_pred eeccCCHHHHHHHHHHHHhhh----cceecHHHHHHHHhhccch-----hHHHHHHhcCHHHHHHHHcC
Confidence 999999999999998776655 8999999999999875322 12237888776654444443
No 192
>PHA02244 ATPase-like protein
Probab=99.17 E-value=5e-10 Score=116.46 Aligned_cols=141 Identities=16% Similarity=0.242 Sum_probs=87.6
Q ss_pred cCCcHHHHHHHHHHHHh--cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehh--hh-hccc-cccc
Q 007723 292 VIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMG--LL-MAGA-KERG 365 (591)
Q Consensus 292 vvG~~~~i~~l~~~L~~--~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~--~l-~~g~-~~~g 365 (591)
++|....+......+.+ ....+++|+||||||||++|+++|..+ +.+++.++.. .+ +.|. ...|
T Consensus 98 ~ig~sp~~~~~~~ri~r~l~~~~PVLL~GppGtGKTtLA~aLA~~l----------g~pfv~In~l~d~~~L~G~i~~~g 167 (383)
T PHA02244 98 KIASNPTFHYETADIAKIVNANIPVFLKGGAGSGKNHIAEQIAEAL----------DLDFYFMNAIMDEFELKGFIDANG 167 (383)
T ss_pred ccCCCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEecChHHHhhcccccccc
Confidence 45655555433332222 345689999999999999999999986 3344444311 11 1111 1112
Q ss_pred hHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhccccc-------------CCcEEEEecCCh
Q 007723 366 ELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG-------------RGELQCIASTTQ 432 (591)
Q Consensus 366 ~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le-------------~g~v~lI~att~ 432 (591)
.|.. ..++..+ ..+.+|||||++.+ ..+++..|.++++ ..++++|+++|+
T Consensus 168 ~~~d--gpLl~A~--~~GgvLiLDEId~a-------------~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~ 230 (383)
T PHA02244 168 KFHE--TPFYEAF--KKGGLFFIDEIDAS-------------IPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNT 230 (383)
T ss_pred cccc--hHHHHHh--hcCCEEEEeCcCcC-------------CHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCC
Confidence 2210 1122222 34679999999988 5566666666553 246899999998
Q ss_pred hH------HHhhhcccHHHHccCcceeecCCCH
Q 007723 433 DE------HRTQFEKDKALARRFQPVLISEPSQ 459 (591)
Q Consensus 433 ~e------~~~~~~~d~aL~~Rf~~i~i~~p~~ 459 (591)
.. |...-.+++++++||..|.+..|+.
T Consensus 231 ~~~G~~~~y~G~k~L~~AllDRFv~I~~dyp~~ 263 (383)
T PHA02244 231 LGKGADHIYVARNKIDGATLDRFAPIEFDYDEK 263 (383)
T ss_pred CccCcccccCCCcccCHHHHhhcEEeeCCCCcH
Confidence 42 2122457899999999999999974
No 193
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.17 E-value=5.7e-11 Score=117.29 Aligned_cols=198 Identities=19% Similarity=0.276 Sum_probs=105.4
Q ss_pred cCCcHHHHHHHHHHHHhcCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCC-ccccCceEEEe-ehhhh------------
Q 007723 292 VIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVP-VFLLSKRIMSL-DMGLL------------ 357 (591)
Q Consensus 292 vvG~~~~i~~l~~~L~~~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p-~~~~~~~~~~l-d~~~l------------ 357 (591)
++||+.+++.|.+.+.......++|+||.|+|||+|++.+...+...+.. ..+........ ....+
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~ 80 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSE 80 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHH
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHH
Confidence 68999999999999988777889999999999999999999987432211 11100000000 00000
Q ss_pred -h----ccc-------cccchHHHHHHHHHHHHHhc-CCeEEEEcCcchhh-cCCCCCCCCCCccHHHHHhhcccccCCc
Q 007723 358 -M----AGA-------KERGELEARVTTLISEIQKS-GDVILFIDEVHTLI-GSGTVGRGNKGTGLDISNLLKPSLGRGE 423 (591)
Q Consensus 358 -~----~g~-------~~~g~~~~~i~~i~~~~~~~-~~~ILfIDEi~~L~-~~~~~~~~~~~~~~~~~n~L~~~le~g~ 423 (591)
. .+. .........+..+++.+.+. .+.||+|||++.+. ..... ......+.+.+.......+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~ 156 (234)
T PF01637_consen 81 ALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEED----KDFLKSLRSLLDSLLSQQN 156 (234)
T ss_dssp HHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTT----HHHHHHHHHHHHH----TT
T ss_pred HHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccch----HHHHHHHHHHHhhccccCC
Confidence 0 000 01123445567777777654 45999999999996 21110 0111233344444334555
Q ss_pred EEEEecCChhH-HHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHh
Q 007723 424 LQCIASTTQDE-HRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (591)
Q Consensus 424 v~lI~att~~e-~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~ 496 (591)
+.+|.+++... +........++..|+..+.+++.+.++..+++....... .++.++++.++.+..++.++
T Consensus 157 ~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~gG~ 227 (234)
T PF01637_consen 157 VSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL---IKLPFSDEDIEEIYSLTGGN 227 (234)
T ss_dssp EEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT-
T ss_pred ceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh---hcccCCHHHHHHHHHHhCCC
Confidence 55555544433 222233456677888889999999999999987655432 22245999999999998766
No 194
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.16 E-value=8.5e-10 Score=112.20 Aligned_cols=182 Identities=19% Similarity=0.235 Sum_probs=105.1
Q ss_pred CCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEE--eehhhhh------ccccccch----HHHHHHHHHHH
Q 007723 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMS--LDMGLLM------AGAKERGE----LEARVTTLISE 377 (591)
Q Consensus 310 ~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~--ld~~~l~------~g~~~~g~----~~~~i~~i~~~ 377 (591)
..+.++|+||+|+|||++++.++..+..+.+. .+.+.. .+...++ .|....+. ....+...+..
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~----~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~ 117 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLDQERVV----AAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIE 117 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhcCCCCeE----EeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHH
Confidence 34567899999999999999999887532211 001110 1111111 12222111 11222222222
Q ss_pred -HHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhccccc-----CCcEEEEecCChhHHHhhhcc--cHHHHccC
Q 007723 378 -IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG-----RGELQCIASTTQDEHRTQFEK--DKALARRF 449 (591)
Q Consensus 378 -~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le-----~g~v~lI~att~~e~~~~~~~--d~aL~~Rf 449 (591)
.......+|+|||+|.+ ..+..+.|..+.+ ...+.+|.+.++. +...+.. ...+.+|+
T Consensus 118 ~~~~~~~~vliiDe~~~l-------------~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~ 183 (269)
T TIGR03015 118 QFAAGKRALLVVDEAQNL-------------TPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRI 183 (269)
T ss_pred HHhCCCCeEEEEECcccC-------------CHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhhe
Confidence 22456789999999998 2233333332221 2234556665554 2222221 24577786
Q ss_pred c-ceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhhhcCCCcHHHHHHHHHHhh
Q 007723 450 Q-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGS 515 (591)
Q Consensus 450 ~-~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i~~~~lp~~ai~lld~a~a 515 (591)
. .+.+++.+.++..+++..............+++++++.+.+.+.++ |.....+.+.+..
T Consensus 184 ~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~------p~~i~~l~~~~~~ 244 (269)
T TIGR03015 184 IASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGI------PRLINILCDRLLL 244 (269)
T ss_pred eeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCc------ccHHHHHHHHHHH
Confidence 5 5889999999999999887765533334578999999999999877 3344555555543
No 195
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=3.2e-10 Score=118.95 Aligned_cols=158 Identities=18% Similarity=0.224 Sum_probs=103.8
Q ss_pred ccCCCCccCCcHHHHHHHHHHHH----h---------cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEE
Q 007723 285 SEELIDPVIGRETEIQRIIQILC----R---------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMS 351 (591)
Q Consensus 285 r~~~~~~vvG~~~~i~~l~~~L~----~---------~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ 351 (591)
.|.+|+.++-..+..++|++-|. + .-+++.|||||||||||+++.|+|+.+ +..+|-
T Consensus 196 HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L----------~ydIyd 265 (457)
T KOG0743|consen 196 HPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYL----------NYDIYD 265 (457)
T ss_pred CCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhc----------CCceEE
Confidence 45678887776665555555332 2 235789999999999999999999988 788888
Q ss_pred eehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCc------cH---HHHHhhcccccCC
Q 007723 352 LDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGT------GL---DISNLLKPSLGRG 422 (591)
Q Consensus 352 ld~~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~------~~---~~~n~L~~~le~g 422 (591)
+++++.. . +.+ ++.++... ..+.||+|.|||+-+....-....+.+ .. -+.|.+.-+....
T Consensus 266 LeLt~v~----~--n~d--Lr~LL~~t--~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSsc 335 (457)
T KOG0743|consen 266 LELTEVK----L--DSD--LRHLLLAT--PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSC 335 (457)
T ss_pred eeecccc----C--cHH--HHHHHHhC--CCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccC
Confidence 8876532 1 222 56655432 467899999999875422111110000 11 1334443333332
Q ss_pred --cEEEEecCChhHHHhhhcccHHHHc--cCc-ceeecCCCHHHHHHHHH
Q 007723 423 --ELQCIASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILL 467 (591)
Q Consensus 423 --~v~lI~att~~e~~~~~~~d~aL~~--Rf~-~i~i~~p~~~e~~~iL~ 467 (591)
+-++|.|||..+ .+||||.| |.+ .|++..-+.+....+..
T Consensus 336 g~ERIivFTTNh~E-----kLDPALlRpGRmDmhI~mgyCtf~~fK~La~ 380 (457)
T KOG0743|consen 336 GDERIIVFTTNHKE-----KLDPALLRPGRMDMHIYMGYCTFEAFKTLAS 380 (457)
T ss_pred CCceEEEEecCChh-----hcCHhhcCCCcceeEEEcCCCCHHHHHHHHH
Confidence 667888888865 68999999 887 58998888887555553
No 196
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.16 E-value=7.6e-10 Score=124.50 Aligned_cols=124 Identities=22% Similarity=0.279 Sum_probs=85.0
Q ss_pred cCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCC-----------------------cEEEEecCChhHHHh
Q 007723 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-----------------------ELQCIASTTQDEHRT 437 (591)
Q Consensus 381 ~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g-----------------------~v~lI~att~~e~~~ 437 (591)
+++++|||||++.| ..+.+..|+.+|+.+ ++++|++++++.
T Consensus 216 AngGtL~Ldei~~L-------------~~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~--- 279 (608)
T TIGR00764 216 AHKGVLYIDEIKTM-------------PLEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDD--- 279 (608)
T ss_pred CCCCEEEEEChHhC-------------CHHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHH---
Confidence 55789999999999 566777777766422 568899999875
Q ss_pred hhcccHHHHccCc---c-eee--cCC-CHHHHHHHHHHHHHHHHhh-cCCCCcHHHHHHHHHHhHHhhhcCCC----cHH
Q 007723 438 QFEKDKALARRFQ---P-VLI--SEP-SQEDAVRILLGLREKYEAH-HNCKFTLEAINAAVHLSARYISDRYL----PDK 505 (591)
Q Consensus 438 ~~~~d~aL~~Rf~---~-i~i--~~p-~~~e~~~iL~~~~~~~~~~-~~i~i~~~al~~l~~~s~r~i~~~~l----p~~ 505 (591)
...++++|.+||. . +.+ ..| +.+...++++.+......+ .-..++++++..+++++.|...++.. .+.
T Consensus 280 l~~l~~~l~~rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~ 359 (608)
T TIGR00764 280 LEGMHPALRSRIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQRRAGRKDHLTLRLRE 359 (608)
T ss_pred HhhcCHHHHHHhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHHhcccccCCCHHH
Confidence 3467899999998 2 333 323 4555555555555555443 23379999999999998887655543 456
Q ss_pred HHHHHHHHhhHhhhh
Q 007723 506 AIDLVDEAGSRAHIE 520 (591)
Q Consensus 506 ai~lld~a~a~~~~~ 520 (591)
.-+++.+|...++..
T Consensus 360 L~~llR~A~~iA~~~ 374 (608)
T TIGR00764 360 LGGLVRAAGDIAKSS 374 (608)
T ss_pred HHHHHHHHHHHHHhc
Confidence 677888875544443
No 197
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.15 E-value=4.2e-10 Score=119.94 Aligned_cols=151 Identities=22% Similarity=0.280 Sum_probs=93.3
Q ss_pred CCccCCcHHHHHHHHHHHHhcCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEe----ehhhhhcccccc
Q 007723 289 IDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSL----DMGLLMAGAKER 364 (591)
Q Consensus 289 ~~~vvG~~~~i~~l~~~L~~~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~l----d~~~l~~g~~~~ 364 (591)
++++++.++.++.+...|.. +.+++|+||||||||++|+.+|..+.....+. ...++.+ +...++.|....
T Consensus 174 l~d~~i~e~~le~l~~~L~~--~~~iil~GppGtGKT~lA~~la~~l~~~~~~~---~v~~VtFHpsySYeDFI~G~rP~ 248 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTI--KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQ---RVNMVQFHQSYSYEDFIQGYRPN 248 (459)
T ss_pred hhcccCCHHHHHHHHHHHhc--CCCEEEECCCCCCHHHHHHHHHHHhcCCcccc---eeeEEeecccccHHHHhcccCCC
Confidence 45678888899998887764 67999999999999999999999885322111 1112222 122344333221
Q ss_pred c-hH---HHHHHHHHHHHHh--cCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccc-------------------
Q 007723 365 G-EL---EARVTTLISEIQK--SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL------------------- 419 (591)
Q Consensus 365 g-~~---~~~i~~i~~~~~~--~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~l------------------- 419 (591)
+ .+ ...+.+++..+.. ..+.+||||||++..-.. ++..+..+|
T Consensus 249 ~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~k------------iFGel~~lLE~~~rg~~~~v~l~y~e~d 316 (459)
T PRK11331 249 GVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSK------------VFGEVMMLMEHDKRGENWSVPLTYSEND 316 (459)
T ss_pred CCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHH------------hhhhhhhhccccccccccceeeeccccc
Confidence 1 00 0113334444443 257899999998762111 111111111
Q ss_pred -----cCCcEEEEecCChhHHHhhhcccHHHHccCcceeecCC
Q 007723 420 -----GRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEP 457 (591)
Q Consensus 420 -----e~g~v~lI~att~~e~~~~~~~d~aL~~Rf~~i~i~~p 457 (591)
-..++.+|||+|..+- ....+|.+|+|||..|.+.+.
T Consensus 317 ~e~f~iP~Nl~IIgTMNt~Dr-s~~~lD~AlrRRF~fi~i~p~ 358 (459)
T PRK11331 317 EERFYVPENVYIIGLMNTADR-SLAVVDYALRRRFSFIDIEPG 358 (459)
T ss_pred cccccCCCCeEEEEecCcccc-chhhccHHHHhhhheEEecCC
Confidence 1346899999998763 344689999999998888763
No 198
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=7e-10 Score=120.78 Aligned_cols=188 Identities=19% Similarity=0.262 Sum_probs=124.2
Q ss_pred CCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEc
Q 007723 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFID 389 (591)
Q Consensus 310 ~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfID 389 (591)
...|++|.||+|+|||.|+++++.++... ..+.+..++++.+- |.+ ...+...+..+|.+.....+.|+++|
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~k~------~~~hv~~v~Cs~l~-~~~-~e~iQk~l~~vfse~~~~~PSiIvLD 501 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYSKD------LIAHVEIVSCSTLD-GSS-LEKIQKFLNNVFSEALWYAPSIIVLD 501 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhccc------cceEEEEEechhcc-chh-HHHHHHHHHHHHHHHHhhCCcEEEEc
Confidence 45789999999999999999999988421 14566677776543 222 33455667778887777889999999
Q ss_pred CcchhhcCCCCCCCCCCc-cHHHHHh----hcccccCCc-EEEEecCChhHHHhhhcccHHHHc--cCc-ceeecCCCHH
Q 007723 390 EVHTLIGSGTVGRGNKGT-GLDISNL----LKPSLGRGE-LQCIASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQE 460 (591)
Q Consensus 390 Ei~~L~~~~~~~~~~~~~-~~~~~n~----L~~~le~g~-v~lI~att~~e~~~~~~~d~aL~~--Rf~-~i~i~~p~~~ 460 (591)
++|.|++......+..+. ...+... ++.++.++. +.+|++...- ..+++.|.+ +|+ ++.++.|...
T Consensus 502 dld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~-----qtl~~~L~s~~~Fq~~~~L~ap~~~ 576 (952)
T KOG0735|consen 502 DLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQEL-----QTLNPLLVSPLLFQIVIALPAPAVT 576 (952)
T ss_pred chhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhh-----hhcChhhcCccceEEEEecCCcchh
Confidence 999998732211110000 1111112 223334444 5777766553 346677765 777 5899999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhhhcCCCcHHHHHHHHHHhhHhhh
Q 007723 461 DAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHI 519 (591)
Q Consensus 461 e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i~~~~lp~~ai~lld~a~a~~~~ 519 (591)
++.+||..+..+- ...+..+.++.+...+.+|... .-.-+.|+|.-.+-+
T Consensus 577 ~R~~IL~~~~s~~----~~~~~~~dLd~ls~~TEGy~~~-----DL~ifVeRai~~a~l 626 (952)
T KOG0735|consen 577 RRKEILTTIFSKN----LSDITMDDLDFLSVKTEGYLAT-----DLVIFVERAIHEAFL 626 (952)
T ss_pred HHHHHHHHHHHhh----hhhhhhHHHHHHHHhcCCccch-----hHHHHHHHHHHHHHH
Confidence 9999998877654 3455667788888888888654 335567777644433
No 199
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.14 E-value=3.9e-10 Score=123.62 Aligned_cols=150 Identities=18% Similarity=0.206 Sum_probs=94.2
Q ss_pred CCCccCCcHHHHHHHHHHHHhcCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccC------------------ceE
Q 007723 288 LIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLS------------------KRI 349 (591)
Q Consensus 288 ~~~~vvG~~~~i~~l~~~L~~~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~------------------~~~ 349 (591)
.|++++|++..++.+...+ ....+++|+||||+|||++++.++..+........+.. .+|
T Consensus 190 d~~dv~Gq~~~~~al~~aa--~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g~~~~~~~~~~~Pf 267 (499)
T TIGR00368 190 DLKDIKGQQHAKRALEIAA--AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVGKLIDRKQIKQRPF 267 (499)
T ss_pred CHHHhcCcHHHHhhhhhhc--cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchhhhccccccccCCc
Confidence 6789999998877666554 34578999999999999999999876532111111111 111
Q ss_pred EEee----hhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCC---
Q 007723 350 MSLD----MGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG--- 422 (591)
Q Consensus 350 ~~ld----~~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g--- 422 (591)
.... ...++.|.. . .--..+..+++++|||||++.+ ...+++.|+..|+.+
T Consensus 268 ~~p~~s~s~~~~~ggg~-----~----~~pG~i~lA~~GvLfLDEi~e~-------------~~~~~~~L~~~LE~~~v~ 325 (499)
T TIGR00368 268 RSPHHSASKPALVGGGP-----I----PLPGEISLAHNGVLFLDELPEF-------------KRSVLDALREPIEDGSIS 325 (499)
T ss_pred cccccccchhhhhCCcc-----c----cchhhhhccCCCeEecCChhhC-------------CHHHHHHHHHHHHcCcEE
Confidence 1110 001111100 0 0011233467889999999998 678888888887644
Q ss_pred ------------cEEEEecCChhHHHh------------------hhcccHHHHccCcc-eeecCCCHHH
Q 007723 423 ------------ELQCIASTTQDEHRT------------------QFEKDKALARRFQP-VLISEPSQED 461 (591)
Q Consensus 423 ------------~v~lI~att~~e~~~------------------~~~~d~aL~~Rf~~-i~i~~p~~~e 461 (591)
.+++|+++|+.+... ...+.++|++||+. +.+..++.++
T Consensus 326 i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~~ 395 (499)
T TIGR00368 326 ISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPEK 395 (499)
T ss_pred EEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHHH
Confidence 478999998743111 12477999999994 6777665443
No 200
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=7.8e-10 Score=111.37 Aligned_cols=112 Identities=25% Similarity=0.295 Sum_probs=80.5
Q ss_pred CCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccC------------CcEEEEecCChhHHHhhhcccHHHHccC
Q 007723 382 GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR------------GELQCIASTTQDEHRTQFEKDKALARRF 449 (591)
Q Consensus 382 ~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~------------g~v~lI~att~~e~~~~~~~d~aL~~Rf 449 (591)
..+|+||||||.+...+..|.+ +-+...+|.-|+|.++. .++.+|++.-.. ..+.-.+-|.|.-||
T Consensus 250 ~~GIvFIDEIDKIa~~~~~g~~-dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh-~sKPSDLiPELQGRf 327 (444)
T COG1220 250 QNGIVFIDEIDKIAKRGGSGGP-DVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFH-VAKPSDLIPELQGRF 327 (444)
T ss_pred hcCeEEEehhhHHHhcCCCCCC-CcchhhhcccccccccCceeeccccccccceEEEEecCcee-cCChhhcChhhcCCC
Confidence 5679999999999887654322 23344567778888863 257888876553 223345669999999
Q ss_pred c-ceeecCCCHHHHHHHHHH----HHHHHHh-----hcCCCCcHHHHHHHHHHhHH
Q 007723 450 Q-PVLISEPSQEDAVRILLG----LREKYEA-----HHNCKFTLEAINAAVHLSAR 495 (591)
Q Consensus 450 ~-~i~i~~p~~~e~~~iL~~----~~~~~~~-----~~~i~i~~~al~~l~~~s~r 495 (591)
- .|.+...+.++...||.. +..+|.. ...+.+++++++.+++.+-.
T Consensus 328 PIRVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~ 383 (444)
T COG1220 328 PIRVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQ 383 (444)
T ss_pred ceEEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHHHH
Confidence 7 599999999999999965 4455532 23457899999999998854
No 201
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.10 E-value=5.9e-10 Score=116.46 Aligned_cols=154 Identities=17% Similarity=0.198 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHhcCCCCCeEecCCCCcHHHHHHHHHHHHHhCCC-C--cccc------------CceEEEeehhhhh--
Q 007723 296 ETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEV-P--VFLL------------SKRIMSLDMGLLM-- 358 (591)
Q Consensus 296 ~~~i~~l~~~L~~~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~-p--~~~~------------~~~~~~ld~~~l~-- 358 (591)
.+..+++... ..+-.+.+||+||+|+||+++|+.+|+.+.+... + .... ...++.+......
T Consensus 7 ~~~~~~l~~~-~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~ 85 (342)
T PRK06964 7 TDDWNRLQAL-RARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAE 85 (342)
T ss_pred HHHHHHHHHh-cCCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEeccccccc
Confidence 3455566664 3334456789999999999999999999977431 1 0000 1122222211100
Q ss_pred ---------------cccc---c-cchHHHHHHHHHHHHH----hcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhh
Q 007723 359 ---------------AGAK---E-RGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLL 415 (591)
Q Consensus 359 ---------------~g~~---~-~g~~~~~i~~i~~~~~----~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L 415 (591)
.|.+ . ..-..+.++.+.+.+. .++..|+|||++|.| +..++|.|
T Consensus 86 ~~~~~~~~~~~~~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m-------------~~~AaNaL 152 (342)
T PRK06964 86 APGAADEAKEADADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEAL-------------NVAAANAL 152 (342)
T ss_pred ccccccccccchhhcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhc-------------CHHHHHHH
Confidence 0000 0 0112344666665543 245779999999999 78899999
Q ss_pred cccccC--CcEEEEecCChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHH
Q 007723 416 KPSLGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLG 468 (591)
Q Consensus 416 ~~~le~--g~v~lI~att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~ 468 (591)
+..||+ ..+++|..|+..+ .+.++++|||+.+.|.+|+.++..+.|..
T Consensus 153 LKtLEEPp~~t~fiL~t~~~~-----~LLpTI~SRcq~i~~~~~~~~~~~~~L~~ 202 (342)
T PRK06964 153 LKTLEEPPPGTVFLLVSARID-----RLLPTILSRCRQFPMTVPAPEAAAAWLAA 202 (342)
T ss_pred HHHhcCCCcCcEEEEEECChh-----hCcHHHHhcCEEEEecCCCHHHHHHHHHH
Confidence 999985 3566666665543 46799999999999999999998888853
No 202
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=2.6e-10 Score=120.54 Aligned_cols=148 Identities=22% Similarity=0.254 Sum_probs=93.8
Q ss_pred CCCccCCcHHHHHHHHHHHHhcCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccc-------------c------Cce
Q 007723 288 LIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFL-------------L------SKR 348 (591)
Q Consensus 288 ~~~~vvG~~~~i~~l~~~L~~~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~-------------~------~~~ 348 (591)
.|.+|+||+...+.+.-.. ...+|++|+||||||||++|..+...+.....++.+ . ..+
T Consensus 177 D~~DV~GQ~~AKrAleiAA--AGgHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~g~~~~~~~~~~~rP 254 (490)
T COG0606 177 DFKDVKGQEQAKRALEIAA--AGGHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLAGDLHEGCPLKIHRP 254 (490)
T ss_pred chhhhcCcHHHHHHHHHHH--hcCCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhcccccccCccceeCC
Confidence 6789999998887776543 457899999999999999999986654221111111 0 111
Q ss_pred EE----EeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCCc-
Q 007723 349 IM----SLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGE- 423 (591)
Q Consensus 349 ~~----~ld~~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g~- 423 (591)
|. +..+.+++.|.... --.++..++++|||+||+-.+ ...+.+.|...||.|+
T Consensus 255 Fr~PHHsaS~~aLvGGG~~p---------~PGeIsLAH~GVLFLDElpef-------------~~~iLe~LR~PLE~g~i 312 (490)
T COG0606 255 FRAPHHSASLAALVGGGGVP---------RPGEISLAHNGVLFLDELPEF-------------KRSILEALREPLENGKI 312 (490)
T ss_pred ccCCCccchHHHHhCCCCCC---------CCCceeeecCCEEEeeccchh-------------hHHHHHHHhCccccCcE
Confidence 11 11222333222100 001223467899999999888 6789999999998763
Q ss_pred --------------EEEEecCChhHHH-----------------h-hhcccHHHHccCc-ceeecCCCH
Q 007723 424 --------------LQCIASTTQDEHR-----------------T-QFEKDKALARRFQ-PVLISEPSQ 459 (591)
Q Consensus 424 --------------v~lI~att~~e~~-----------------~-~~~~d~aL~~Rf~-~i~i~~p~~ 459 (591)
+++|++||+...- . .-++..+|++|++ .+.++.++.
T Consensus 313 ~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lDRiDl~vev~~~~~ 381 (490)
T COG0606 313 IISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLDRIDLMVEVPRLSA 381 (490)
T ss_pred EEEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHhhhhheecccCCCH
Confidence 5778888765211 0 1235678999998 466666653
No 203
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.10 E-value=1.1e-10 Score=110.63 Aligned_cols=112 Identities=26% Similarity=0.371 Sum_probs=71.6
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhccccccchHHHHHHHHHH----HHHhcCCeEE
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLIS----EIQKSGDVIL 386 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~----~~~~~~~~IL 386 (591)
..+++|+||+|||||.+|++|++.+.- -...+++.+|++.+..+.. ....+..++. ........||
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~------~~~~~~~~~d~s~~~~~~~----~~~~~~~l~~~~~~~v~~~~~gVV 72 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFV------GSERPLIRIDMSEYSEGDD----VESSVSKLLGSPPGYVGAEEGGVV 72 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-------SSCCEEEEEEGGGHCSHHH----CSCHCHHHHHHTTCHHHHHHHTEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhcc------CCccchHHHhhhcccccch----HHhhhhhhhhcccceeeccchhhh
Confidence 457899999999999999999999841 1256888999988765111 0111111111 1112233499
Q ss_pred EEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCC-------------cEEEEecCChhH
Q 007723 387 FIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-------------ELQCIASTTQDE 434 (591)
Q Consensus 387 fIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g-------------~v~lI~att~~e 434 (591)
|||||+........ +.+.....+++.|+++++.| ++++|+++|...
T Consensus 73 llDEidKa~~~~~~--~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 73 LLDEIDKAHPSNSG--GADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp EEETGGGCSHTTTT--CSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred hhHHHhhccccccc--cchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 99999999543111 11122347899999988644 467888887653
No 204
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.10 E-value=4.7e-09 Score=101.47 Aligned_cols=194 Identities=17% Similarity=0.235 Sum_probs=128.8
Q ss_pred CCCCccCCcHHHHHHHHHH----HHhcCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhcccc
Q 007723 287 ELIDPVIGRETEIQRIIQI----LCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAK 362 (591)
Q Consensus 287 ~~~~~vvG~~~~i~~l~~~----L~~~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~~ 362 (591)
-.+.+++|-+...+.|++. +....-+|+||+|..|||||+|++++...+... +-++++++-..+.
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~-------glrLVEV~k~dl~---- 125 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADE-------GLRLVEVDKEDLA---- 125 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhc-------CCeEEEEcHHHHh----
Confidence 3556789988877776653 444556899999999999999999999988543 4568888765543
Q ss_pred ccchHHHHHHHHHHHHHh-cCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccC------CcEEEEecCChhHH
Q 007723 363 ERGELEARVTTLISEIQK-SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR------GELQCIASTTQDEH 435 (591)
Q Consensus 363 ~~g~~~~~i~~i~~~~~~-~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~------g~v~lI~att~~e~ 435 (591)
.+..+++.++. ..+.|||+||+-.= ...+....||.+|+. .+|.+-+++|....
T Consensus 126 -------~Lp~l~~~Lr~~~~kFIlFcDDLSFe------------~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRRHL 186 (287)
T COG2607 126 -------TLPDLVELLRARPEKFILFCDDLSFE------------EGDDAYKALKSALEGGVEGRPANVLFYATSNRRHL 186 (287)
T ss_pred -------hHHHHHHHHhcCCceEEEEecCCCCC------------CCchHHHHHHHHhcCCcccCCCeEEEEEecCCccc
Confidence 14566676665 46899999998543 134567788888863 25666666665421
Q ss_pred Hh-hh--------cc--------cHHHHccCcc-eeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhh
Q 007723 436 RT-QF--------EK--------DKALARRFQP-VLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497 (591)
Q Consensus 436 ~~-~~--------~~--------d~aL~~Rf~~-i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i 497 (591)
-. .+ ++ --.|.+||.. +.+.+++.++..+|+.+.+.++ ++.++++.++.-+..-...-
T Consensus 187 l~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~----~l~~~~e~l~~eAl~WAt~r 262 (287)
T COG2607 187 LPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHF----GLDISDEELHAEALQWATTR 262 (287)
T ss_pred ccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHHhc
Confidence 10 00 11 1246679984 8999999999999997777654 99998866655332221111
Q ss_pred hcCCCcHHHHHHHHHHhh
Q 007723 498 SDRYLPDKAIDLVDEAGS 515 (591)
Q Consensus 498 ~~~~lp~~ai~lld~a~a 515 (591)
.+ .-.+.|-++++..+.
T Consensus 263 g~-RSGR~A~QF~~~~~g 279 (287)
T COG2607 263 GG-RSGRVAWQFIRDLAG 279 (287)
T ss_pred CC-CccHhHHHHHHHHHh
Confidence 11 124457777766553
No 205
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=2e-09 Score=111.60 Aligned_cols=174 Identities=26% Similarity=0.360 Sum_probs=114.1
Q ss_pred CCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhccccccc-hHHHHHHHHHHHH----HhcCCe
Q 007723 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERG-ELEARVTTLISEI----QKSGDV 384 (591)
Q Consensus 310 ~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~~~~g-~~~~~i~~i~~~~----~~~~~~ 384 (591)
.+.|+||.||+|+|||.||+.||+.+ +.+|...|+..+.. +.|.| +++.-+..++.++ .++..+
T Consensus 225 eKSNvLllGPtGsGKTllaqTLAr~l----------dVPfaIcDcTtLTQ-AGYVGeDVEsvi~KLl~~A~~nVekAQqG 293 (564)
T KOG0745|consen 225 EKSNVLLLGPTGSGKTLLAQTLARVL----------DVPFAICDCTTLTQ-AGYVGEDVESVIQKLLQEAEYNVEKAQQG 293 (564)
T ss_pred ecccEEEECCCCCchhHHHHHHHHHh----------CCCeEEecccchhh-cccccccHHHHHHHHHHHccCCHHHHhcC
Confidence 47899999999999999999999988 56666777777653 33666 4555666666554 457789
Q ss_pred EEEEcCcchhhcC-CCCCCCCCCccHHHHHhhcccccC---------------C--------cEEEEecCChhHHH----
Q 007723 385 ILFIDEVHTLIGS-GTVGRGNKGTGLDISNLLKPSLGR---------------G--------ELQCIASTTQDEHR---- 436 (591)
Q Consensus 385 ILfIDEi~~L~~~-~~~~~~~~~~~~~~~n~L~~~le~---------------g--------~v~lI~att~~e~~---- 436 (591)
|+||||+|.+..+ ...+...+-+..-+|..|+.++|- + ++.+|+..-.....
T Consensus 294 IVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~ 373 (564)
T KOG0745|consen 294 IVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIIS 373 (564)
T ss_pred eEEEehhhhhcccCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHH
Confidence 9999999999632 111111122344577777776651 1 23333321110000
Q ss_pred -----------------------------------h------------hhcccHHHHccCcc-eeecCCCHHHHHHHHHH
Q 007723 437 -----------------------------------T------------QFEKDKALARRFQP-VLISEPSQEDAVRILLG 468 (591)
Q Consensus 437 -----------------------------------~------------~~~~d~aL~~Rf~~-i~i~~p~~~e~~~iL~~ 468 (591)
. .+.+-|.|.-||-+ +.+...+.++++.+|..
T Consensus 374 rR~~d~slGFg~~s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVlVplh~L~~~~Lv~VLtE 453 (564)
T KOG0745|consen 374 RRLDDKSLGFGAPSSKGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVLVPLHSLDEDQLVRVLTE 453 (564)
T ss_pred HhhcchhcccCCCCCccchhhcccccCcchhHHHHHHHHhhccccchhhhcCcHHHhcccceEeeccccCHHHHHHHHhc
Confidence 0 11234677778874 78888899999999976
Q ss_pred ----HHHHHHhhc-----CCCCcHHHHHHHHHHhH
Q 007723 469 ----LREKYEAHH-----NCKFTLEAINAAVHLSA 494 (591)
Q Consensus 469 ----~~~~~~~~~-----~i~i~~~al~~l~~~s~ 494 (591)
+...|...+ .+.+++++++.+++++-
T Consensus 454 PknaL~~Qyk~lf~~~nV~L~fTe~Al~~IAq~Al 488 (564)
T KOG0745|consen 454 PKNALGKQYKKLFGMDNVELHFTEKALEAIAQLAL 488 (564)
T ss_pred chhhHHHHHHHHhccCCeeEEecHHHHHHHHHHHH
Confidence 445554433 34689999999999874
No 206
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=99.08 E-value=1.5e-09 Score=112.44 Aligned_cols=149 Identities=15% Similarity=0.122 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHhcCCCC-CeEecCCCCcHHHHHHHHHHHHHhCCCCc-cc------------cCceEEEeehhhhhccc
Q 007723 296 ETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPV-FL------------LSKRIMSLDMGLLMAGA 361 (591)
Q Consensus 296 ~~~i~~l~~~L~~~~~~~-ilL~GppGvGKT~la~~lA~~l~~~~~p~-~~------------~~~~~~~ld~~~l~~g~ 361 (591)
.+..+++...+.+.+.+| ++|+||.|+||+++|+.+|+.+.+.+.+. .. ....++.+.... .|
T Consensus 9 ~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--~~- 85 (319)
T PRK06090 9 VPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK--EG- 85 (319)
T ss_pred HHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc--CC-
Confidence 456677888877766555 67889999999999999999997754211 00 011233332210 00
Q ss_pred cccchHHHHHHHHHHHHHh----cCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccC--CcEEEEecCChhHH
Q 007723 362 KERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQCIASTTQDEH 435 (591)
Q Consensus 362 ~~~g~~~~~i~~i~~~~~~----~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~--g~v~lI~att~~e~ 435 (591)
+. -..+.++.+.+.+.. .+..|++||++|.| +..++|.|++.||+ .++.+|..|+..+
T Consensus 86 ~~--I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m-------------~~~AaNaLLKtLEEPp~~t~fiL~t~~~~- 149 (319)
T PRK06090 86 KS--ITVEQIRQCNRLAQESSQLNGYRLFVIEPADAM-------------NESASNALLKTLEEPAPNCLFLLVTHNQK- 149 (319)
T ss_pred Cc--CCHHHHHHHHHHHhhCcccCCceEEEecchhhh-------------CHHHHHHHHHHhcCCCCCeEEEEEECChh-
Confidence 11 112335555554432 45789999999999 77899999999985 3456666555432
Q ss_pred HhhhcccHHHHccCcceeecCCCHHHHHHHHH
Q 007723 436 RTQFEKDKALARRFQPVLISEPSQEDAVRILL 467 (591)
Q Consensus 436 ~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~ 467 (591)
.+-|+++|||+.+.+.+|+.++..+.|.
T Consensus 150 ----~lLpTI~SRCq~~~~~~~~~~~~~~~L~ 177 (319)
T PRK06090 150 ----RLLPTIVSRCQQWVVTPPSTAQAMQWLK 177 (319)
T ss_pred ----hChHHHHhcceeEeCCCCCHHHHHHHHH
Confidence 4669999999999999999999888774
No 207
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.06 E-value=1.8e-10 Score=105.15 Aligned_cols=111 Identities=23% Similarity=0.372 Sum_probs=67.1
Q ss_pred CCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhc-----c-ccc-cchHHHHHHHHHHHHHhcCCeE
Q 007723 313 NPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA-----G-AKE-RGELEARVTTLISEIQKSGDVI 385 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~-----g-~~~-~g~~~~~i~~i~~~~~~~~~~I 385 (591)
+++|+||||||||++++.+|+.+ +.+++.+.+..... | ... .+..+-.-..+...+ ..+.+
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~----------~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~--~~~~i 68 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALL----------GRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM--RKGGI 68 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH----------TCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH--HEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHh----------hcceEEEEeccccccccceeeeeecccccccccccccccc--cceeE
Confidence 58999999999999999999988 44555554443210 1 000 000000000000011 15789
Q ss_pred EEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCC---------------------cEEEEecCChhHHHhhhcccHH
Q 007723 386 LFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG---------------------ELQCIASTTQDEHRTQFEKDKA 444 (591)
Q Consensus 386 LfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g---------------------~v~lI~att~~e~~~~~~~d~a 444 (591)
+||||++.. ..++++.|.++++.+ .+++|+++|+.. .....++++
T Consensus 69 l~lDEin~a-------------~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~-~~~~~l~~a 134 (139)
T PF07728_consen 69 LVLDEINRA-------------PPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRD-KGRKELSPA 134 (139)
T ss_dssp EEESSCGG---------------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST---TTTTCHH
T ss_pred EEECCcccC-------------CHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCC-CCcCcCCHH
Confidence 999999988 567777777666421 289999999876 334578899
Q ss_pred HHccC
Q 007723 445 LARRF 449 (591)
Q Consensus 445 L~~Rf 449 (591)
|.+||
T Consensus 135 l~~Rf 139 (139)
T PF07728_consen 135 LLDRF 139 (139)
T ss_dssp HHTT-
T ss_pred HHhhC
Confidence 99998
No 208
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.02 E-value=3.5e-09 Score=110.16 Aligned_cols=99 Identities=17% Similarity=0.154 Sum_probs=71.8
Q ss_pred cCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCCc-------------EEEEecCChhHHHhh--hcccHHH
Q 007723 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGE-------------LQCIASTTQDEHRTQ--FEKDKAL 445 (591)
Q Consensus 381 ~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g~-------------v~lI~att~~e~~~~--~~~d~aL 445 (591)
+.++|+-|+|+... ..++++-|+..++++. .++|+++|+.+|... .+...+|
T Consensus 235 aNrGi~~f~Ei~K~-------------~~~~l~~LL~~~qE~~v~~~~~~~~~~~d~liia~sNe~e~~~~~~~k~~eaf 301 (361)
T smart00763 235 ANRGILEFVEMFKA-------------DIKFLHPLLTATQEGNIKGTGGFAMIPIDGLIIAHSNESEWQRFKSNKKNEAL 301 (361)
T ss_pred ccCceEEEeehhcC-------------CHHHHHHHhhhhhcceEecCCcccccccceEEEEeCCHHHHhhhhccccchhh
Confidence 45678888898877 6788888888776442 367899999998754 3557999
Q ss_pred HccCcceeecCC-CHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHh
Q 007723 446 ARRFQPVLISEP-SQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLS 493 (591)
Q Consensus 446 ~~Rf~~i~i~~p-~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s 493 (591)
.+||..|.++.+ +..+-.+|.+..+..-. ..++.+.+.+++.++..+
T Consensus 302 ~dR~~~i~vpY~l~~~~E~~Iy~k~~~~s~-~~~~~~aP~~le~aa~~a 349 (361)
T smart00763 302 LDRIIKVKVPYCLRVSEEAQIYEKLLRNSD-LTEAHIAPHTLEMAALFS 349 (361)
T ss_pred hhceEEEeCCCcCCHHHHHHHHHHHhccCc-CcccccCchHHHHHHHHH
Confidence 999999999888 45777778766554211 125667777777766654
No 209
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.02 E-value=2.9e-09 Score=119.48 Aligned_cols=127 Identities=20% Similarity=0.246 Sum_probs=85.9
Q ss_pred cCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCC-----------------------cEEEEecCChhHHHh
Q 007723 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-----------------------ELQCIASTTQDEHRT 437 (591)
Q Consensus 381 ~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g-----------------------~v~lI~att~~e~~~ 437 (591)
+++++|||||++.| ...++..|+.+|+.+ ++++|++++++.
T Consensus 225 AnGGtL~LDei~~L-------------~~~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~l--- 288 (637)
T PRK13765 225 AHKGVLFIDEINTL-------------DLESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLDA--- 288 (637)
T ss_pred CCCcEEEEeChHhC-------------CHHHHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcCH---
Confidence 56789999999999 566777777766422 458999999864
Q ss_pred hhcccHHHHccCcc----eeecC--C-CHHHHHHHHHHHHHHHHhh-cCCCCcHHHHHHHHHHhHHhhhcCC---C-cHH
Q 007723 438 QFEKDKALARRFQP----VLISE--P-SQEDAVRILLGLREKYEAH-HNCKFTLEAINAAVHLSARYISDRY---L-PDK 505 (591)
Q Consensus 438 ~~~~d~aL~~Rf~~----i~i~~--p-~~~e~~~iL~~~~~~~~~~-~~i~i~~~al~~l~~~s~r~i~~~~---l-p~~ 505 (591)
....++.|..||.. +.+.. + +.+....+++.+.+....+ .-..++++++..+++++.|....+. + ...
T Consensus 289 l~~~dpdL~~rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R~ag~r~~lsl~~~~ 368 (637)
T PRK13765 289 LENMHPALRSRIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKRRAGRKGHLTLKLRD 368 (637)
T ss_pred HHhhhHHHHHHhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHhCCccccccCHHH
Confidence 33468999999963 34332 1 2344444554444444333 2347999999999999998876654 2 457
Q ss_pred HHHHHHHHhhHhhhhhhc
Q 007723 506 AIDLVDEAGSRAHIELFK 523 (591)
Q Consensus 506 ai~lld~a~a~~~~~~~~ 523 (591)
..+++.+|...++..+..
T Consensus 369 l~~l~r~a~~~a~~~~~~ 386 (637)
T PRK13765 369 LGGLVRVAGDIARSEGAE 386 (637)
T ss_pred HHHHHHHHHHHHHhhccc
Confidence 778888887666655443
No 210
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.01 E-value=9.5e-10 Score=120.11 Aligned_cols=149 Identities=21% Similarity=0.268 Sum_probs=93.8
Q ss_pred CCCccCCcHHHHHHHHHHHHhcCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEe---------------
Q 007723 288 LIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSL--------------- 352 (591)
Q Consensus 288 ~~~~vvG~~~~i~~l~~~L~~~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~l--------------- 352 (591)
.|.+++|+...++.+.-.+ ....+++|+||||+|||++++.++..+........+....++.+
T Consensus 189 d~~~v~Gq~~~~~al~laa--~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPf 266 (506)
T PRK09862 189 DLSDVIGQEQGKRGLEITA--AGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPF 266 (506)
T ss_pred CeEEEECcHHHHhhhheec--cCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCc
Confidence 6677889887776654322 45678999999999999999999876532111111111111111
Q ss_pred -------ehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCC---
Q 007723 353 -------DMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG--- 422 (591)
Q Consensus 353 -------d~~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g--- 422 (591)
....++.|.. . . --..+..+++++|||||++.+ ....++.|+..|+.+
T Consensus 267 r~ph~~~s~~~l~GGg~-----~--~--~pG~l~~A~gGvLfLDEi~e~-------------~~~~~~~L~~~LE~g~v~ 324 (506)
T PRK09862 267 RSPHHSASLTAMVGGGA-----I--P--GPGEISLAHNGVLFLDELPEF-------------ERRTLDALREPIESGQIH 324 (506)
T ss_pred cCCCccchHHHHhCCCc-----e--e--hhhHhhhccCCEEecCCchhC-------------CHHHHHHHHHHHHcCcEE
Confidence 1111221110 0 0 012344577899999999988 677888888877654
Q ss_pred ------------cEEEEecCChhHHHhh----------------hcccHHHHccCcc-eeecCCCHH
Q 007723 423 ------------ELQCIASTTQDEHRTQ----------------FEKDKALARRFQP-VLISEPSQE 460 (591)
Q Consensus 423 ------------~v~lI~att~~e~~~~----------------~~~d~aL~~Rf~~-i~i~~p~~~ 460 (591)
++++|+++|+.+...+ -.+.+++.+||+. +.++.|+.+
T Consensus 325 I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~ 391 (506)
T PRK09862 325 LSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPG 391 (506)
T ss_pred EecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHH
Confidence 3689999998752111 2467899999994 788877644
No 211
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.00 E-value=9.5e-10 Score=120.25 Aligned_cols=185 Identities=23% Similarity=0.331 Sum_probs=120.2
Q ss_pred CCCccCCcHHHHHHHHHHHHh--cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhh-------
Q 007723 288 LIDPVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM------- 358 (591)
Q Consensus 288 ~~~~vvG~~~~i~~l~~~L~~--~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~------- 358 (591)
.+..++|....+.++.+.+.+ ....+++|+|++||||+++|+.++...... +.+++.+|+..+.
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~-------~~~~v~v~c~~~~~~~~~~~ 209 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDRK-------DKRFVAINCAAIPENLLESE 209 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhCCcC-------CCCeEEEECCCCChHHHHHH
Confidence 455689988888888777654 455788999999999999999999865322 3456677765431
Q ss_pred -ccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCC-------------cE
Q 007723 359 -AGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-------------EL 424 (591)
Q Consensus 359 -~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g-------------~v 424 (591)
.|.. .|.+....+.....+..+.+++||||||+.| ..+++..|..+++.+ .+
T Consensus 210 lfg~~-~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l-------------~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~ 275 (445)
T TIGR02915 210 LFGYE-KGAFTGAVKQTLGKIEYAHGGTLFLDEIGDL-------------PLNLQAKLLRFLQERVIERLGGREEIPVDV 275 (445)
T ss_pred hcCCC-CCCcCCCccCCCCceeECCCCEEEEechhhC-------------CHHHHHHHHHHHhhCeEEeCCCCceeeece
Confidence 1110 1111000011111122356789999999999 677888888777643 46
Q ss_pred EEEecCChhHHH--hhhcccHHHHccCcceeecCCCHH----HHHHHHHHHHHHHHhhcC---CCCcHHHHHHHHHHh
Q 007723 425 QCIASTTQDEHR--TQFEKDKALARRFQPVLISEPSQE----DAVRILLGLREKYEAHHN---CKFTLEAINAAVHLS 493 (591)
Q Consensus 425 ~lI~att~~e~~--~~~~~d~aL~~Rf~~i~i~~p~~~----e~~~iL~~~~~~~~~~~~---i~i~~~al~~l~~~s 493 (591)
++|++|+.+--. ..-...+.|..|+..+.+..|+.. ++..++..++.++...++ ..+++++++.+..+.
T Consensus 276 rii~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~ 353 (445)
T TIGR02915 276 RIVCATNQDLKRMIAEGTFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHA 353 (445)
T ss_pred EEEEecCCCHHHHHHcCCccHHHHHHhccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCC
Confidence 899988875311 112345678888887777777664 444455555555544433 468999999988774
No 212
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.95 E-value=1.3e-09 Score=119.92 Aligned_cols=185 Identities=23% Similarity=0.332 Sum_probs=119.4
Q ss_pred CCCccCCcHHHHHHHHHHHHh--cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhh-------
Q 007723 288 LIDPVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM------- 358 (591)
Q Consensus 288 ~~~~vvG~~~~i~~l~~~L~~--~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~------- 358 (591)
.+.+++|....+.++.+.+.+ ....+++++|++|||||++|++++...... +.+++.+|+..+.
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~-------~~~~i~i~c~~~~~~~~~~~ 208 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRA-------KAPFIALNMAAIPKDLIESE 208 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhcCCCC-------CCCeEeeeCCCCCHHHHHHH
Confidence 355789999888888776654 445678999999999999999999865332 4566777765441
Q ss_pred -ccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCC-------------cE
Q 007723 359 -AGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-------------EL 424 (591)
Q Consensus 359 -~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g-------------~v 424 (591)
.|.. .|.+..........+..+.++.||||||+.| ..+.+..|..+++.+ ++
T Consensus 209 lfg~~-~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l-------------~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~ 274 (469)
T PRK10923 209 LFGHE-KGAFTGANTIRQGRFEQADGGTLFLDEIGDM-------------PLDVQTRLLRVLADGQFYRVGGYAPVKVDV 274 (469)
T ss_pred hcCCC-CCCCCCCCcCCCCCeeECCCCEEEEeccccC-------------CHHHHHHHHHHHhcCcEEeCCCCCeEEeeE
Confidence 1110 0100000000000122345779999999999 677888888877654 35
Q ss_pred EEEecCChhHHH--hhhcccHHHHccCcceeecCCCH----HHHHHHHHHHHHHHHhhcCC---CCcHHHHHHHHHHh
Q 007723 425 QCIASTTQDEHR--TQFEKDKALARRFQPVLISEPSQ----EDAVRILLGLREKYEAHHNC---KFTLEAINAAVHLS 493 (591)
Q Consensus 425 ~lI~att~~e~~--~~~~~d~aL~~Rf~~i~i~~p~~----~e~~~iL~~~~~~~~~~~~i---~i~~~al~~l~~~s 493 (591)
++|++|+.+--. ......+.|..||..+.+..|+. +++..++..+..++...++. .+++++++.+..+.
T Consensus 275 rii~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~ 352 (469)
T PRK10923 275 RIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLA 352 (469)
T ss_pred EEEEeCCCCHHHHHHcCCchHHHHHHhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCC
Confidence 888888765311 11234578888998777777765 55555666666665544432 58999998888774
No 213
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.93 E-value=1.3e-09 Score=96.59 Aligned_cols=107 Identities=24% Similarity=0.332 Sum_probs=58.5
Q ss_pred CCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeeh------hhhhccccc----cchHHHHHHHHHHHHHhcC
Q 007723 313 NPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM------GLLMAGAKE----RGELEARVTTLISEIQKSG 382 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~------~~l~~g~~~----~g~~~~~i~~i~~~~~~~~ 382 (591)
|+||.|+||+|||++|+++|+.+. ..+..+.. ++++ |... .++++-.-.-++
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~----------~~f~RIq~tpdllPsDi~-G~~v~~~~~~~f~~~~GPif------- 62 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLG----------LSFKRIQFTPDLLPSDIL-GFPVYDQETGEFEFRPGPIF------- 62 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT------------EEEEE--TT--HHHHH-EEEEEETTTTEEEEEE-TT--------
T ss_pred CEeeECCCccHHHHHHHHHHHHcC----------CceeEEEecCCCCcccce-eeeeeccCCCeeEeecChhh-------
Confidence 689999999999999999999873 22222211 1111 2111 011100000011
Q ss_pred CeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCC-------------cEEEEecCChhHHHhhhcccHHHHccC
Q 007723 383 DVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-------------ELQCIASTTQDEHRTQFEKDKALARRF 449 (591)
Q Consensus 383 ~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g-------------~v~lI~att~~e~~~~~~~d~aL~~Rf 449 (591)
..|+++|||++. ....|.+|+..|+++ .+++|++.|+.++...+.+..++.+||
T Consensus 63 ~~ill~DEiNra-------------ppktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF 129 (131)
T PF07726_consen 63 TNILLADEINRA-------------PPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRF 129 (131)
T ss_dssp SSEEEEETGGGS--------------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTS
T ss_pred hceeeecccccC-------------CHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhccc
Confidence 249999999998 667888898888644 357888999988888889999999999
Q ss_pred c
Q 007723 450 Q 450 (591)
Q Consensus 450 ~ 450 (591)
-
T Consensus 130 ~ 130 (131)
T PF07726_consen 130 M 130 (131)
T ss_dssp S
T ss_pred c
Confidence 4
No 214
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.93 E-value=9.4e-09 Score=107.21 Aligned_cols=154 Identities=18% Similarity=0.207 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHhcCCCCCeEecCCCCcHHHHHHHHHHHHHhCCC-Cc--cc------------cCceEEEeehhhh--h
Q 007723 296 ETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEV-PV--FL------------LSKRIMSLDMGLL--M 358 (591)
Q Consensus 296 ~~~i~~l~~~L~~~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~-p~--~~------------~~~~~~~ld~~~l--~ 358 (591)
+...+++... ..+-.+.+||+||+|+|||++|+.+|+.+.+... +. .. ....++.++...- -
T Consensus 7 ~~~w~~l~~~-~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~ 85 (325)
T PRK08699 7 QEQWRQIAEH-WERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPE 85 (325)
T ss_pred HHHHHHHHHh-cCCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEeccccccc
Confidence 3455555554 2233455789999999999999999999876321 00 00 0123444433110 0
Q ss_pred ccccccchHHHHHHHHHHHHHh----cCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCC--cEEEEecCCh
Q 007723 359 AGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG--ELQCIASTTQ 432 (591)
Q Consensus 359 ~g~~~~g~~~~~i~~i~~~~~~----~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g--~v~lI~att~ 432 (591)
.|.+...-..+.++.+.+.+.. .+..|++||+++.| +...+|.|+..+++. ...+|.+|+.
T Consensus 86 ~g~~~~~I~id~iR~l~~~~~~~p~~~~~kV~iiEp~~~L-------------d~~a~naLLk~LEep~~~~~~Ilvth~ 152 (325)
T PRK08699 86 NGRKLLQIKIDAVREIIDNVYLTSVRGGLRVILIHPAESM-------------NLQAANSLLKVLEEPPPQVVFLLVSHA 152 (325)
T ss_pred ccccCCCcCHHHHHHHHHHHhhCcccCCceEEEEechhhC-------------CHHHHHHHHHHHHhCcCCCEEEEEeCC
Confidence 0100000123446676666643 45679999999999 778889998888753 4555655555
Q ss_pred hHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHH
Q 007723 433 DEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLG 468 (591)
Q Consensus 433 ~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~ 468 (591)
.. .+.+++.+||+.+.|.+|+.++..+.|..
T Consensus 153 ~~-----~ll~ti~SRc~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 153 AD-----KVLPTIKSRCRKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred hH-----hChHHHHHHhhhhcCCCCCHHHHHHHHHh
Confidence 32 35689999999999999999998887753
No 215
>PRK12377 putative replication protein; Provisional
Probab=98.92 E-value=3.7e-09 Score=105.84 Aligned_cols=140 Identities=15% Similarity=0.186 Sum_probs=76.6
Q ss_pred ccCCCCccC----CcHHHHHHHHHHHHh--cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhh
Q 007723 285 SEELIDPVI----GRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM 358 (591)
Q Consensus 285 r~~~~~~vv----G~~~~i~~l~~~L~~--~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~ 358 (591)
...+|+.+. |+...+..+..+... ....+++|+||||||||+||.++++.+... +..++.++...++
T Consensus 69 ~~~tFdnf~~~~~~~~~a~~~a~~~a~~~~~~~~~l~l~G~~GtGKThLa~AIa~~l~~~-------g~~v~~i~~~~l~ 141 (248)
T PRK12377 69 RKCSFANYQVQNDGQRYALSQAKSIADELMTGCTNFVFSGKPGTGKNHLAAAIGNRLLAK-------GRSVIVVTVPDVM 141 (248)
T ss_pred ccCCcCCcccCChhHHHHHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHHc-------CCCeEEEEHHHHH
Confidence 334555554 233334433333332 234689999999999999999999998643 4556666766655
Q ss_pred ccccc---cchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccC---CcEEEEecCCh
Q 007723 359 AGAKE---RGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR---GELQCIASTTQ 432 (591)
Q Consensus 359 ~g~~~---~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~---g~v~lI~att~ 432 (591)
...+. .++. ...++..+. ...+|+|||++.... +...++.|.++++. ...-+|.+||.
T Consensus 142 ~~l~~~~~~~~~---~~~~l~~l~--~~dLLiIDDlg~~~~-----------s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 142 SRLHESYDNGQS---GEKFLQELC--KVDLLVLDEIGIQRE-----------TKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred HHHHHHHhccch---HHHHHHHhc--CCCEEEEcCCCCCCC-----------CHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 32110 1111 123344333 345999999976621 22344555555542 22334556664
Q ss_pred --hHHHhhhcccHHHHccC
Q 007723 433 --DEHRTQFEKDKALARRF 449 (591)
Q Consensus 433 --~e~~~~~~~d~aL~~Rf 449 (591)
.++.. .+...+.+|+
T Consensus 206 ~~~~l~~--~~~~ri~dRl 222 (248)
T PRK12377 206 NHEAMST--LLGERVMDRM 222 (248)
T ss_pred CHHHHHH--HhhHHHHHHH
Confidence 33322 2335566665
No 216
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.92 E-value=7.6e-10 Score=101.18 Aligned_cols=130 Identities=22% Similarity=0.339 Sum_probs=83.9
Q ss_pred CCcHHHHHHHHHHHHh--cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhccccccchHHHH
Q 007723 293 IGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEAR 370 (591)
Q Consensus 293 vG~~~~i~~l~~~L~~--~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~~~~g~~~~~ 370 (591)
||....++++.+.+.+ ....+++|+|++||||+++|+.|+....... ..++.+++..+.
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~-------~~~~~~~~~~~~------------ 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGRAN-------GPFIVIDCASLP------------ 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTTCC-------S-CCCCCHHCTC------------
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCccC-------CCeEEechhhCc------------
Confidence 5778888888887766 5667899999999999999999998653322 223333333211
Q ss_pred HHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhccccc---CCcEEEEecCChhHHH--hhhcccHHH
Q 007723 371 VTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG---RGELQCIASTTQDEHR--TQFEKDKAL 445 (591)
Q Consensus 371 i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le---~g~v~lI~att~~e~~--~~~~~d~aL 445 (591)
.++++ +..+++|||+|++.| +.+.+..|...+. +.++++|++++.+-.. ....+++.|
T Consensus 62 -~~~l~---~a~~gtL~l~~i~~L-------------~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~l~~l~~~~~~~~~L 124 (138)
T PF14532_consen 62 -AELLE---QAKGGTLYLKNIDRL-------------SPEAQRRLLDLLKRQERSNVRLIASSSQDLEELVEEGRFSPDL 124 (138)
T ss_dssp -HHHHH---HCTTSEEEEECGCCS--------------HHHHHHHHHHHHHCTTTTSEEEEEECC-CCCHHHHSTHHHHH
T ss_pred -HHHHH---HcCCCEEEECChHHC-------------CHHHHHHHHHHHHhcCCCCeEEEEEeCCCHHHHhhccchhHHH
Confidence 22333 247789999999999 6667777776665 3567888877654211 223456888
Q ss_pred HccCcceeecCCC
Q 007723 446 ARRFQPVLISEPS 458 (591)
Q Consensus 446 ~~Rf~~i~i~~p~ 458 (591)
..||..+.+..|+
T Consensus 125 ~~~l~~~~i~lPp 137 (138)
T PF14532_consen 125 YYRLSQLEIHLPP 137 (138)
T ss_dssp HHHCSTCEEEE--
T ss_pred HHHhCCCEEeCCC
Confidence 8898876666554
No 217
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.92 E-value=2.2e-08 Score=99.41 Aligned_cols=111 Identities=22% Similarity=0.245 Sum_probs=82.4
Q ss_pred CeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCC-cEEEEecCChh-------HHHhhhcccHHHHccCcceee
Q 007723 383 DVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-ELQCIASTTQD-------EHRTQFEKDKALARRFQPVLI 454 (591)
Q Consensus 383 ~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g-~v~lI~att~~-------e~~~~~~~d~aL~~Rf~~i~i 454 (591)
++||||||+|+| ..+.+..|...++.. ..++|.+||.. .|.....++-.|.+|.-+|..
T Consensus 289 pGVLFIDEvHML-------------DIEcFsFlNrAlE~d~~PiiimaTNrgit~iRGTn~~SphGiP~D~lDR~lII~t 355 (454)
T KOG2680|consen 289 PGVLFIDEVHML-------------DIECFSFLNRALENDMAPIIIMATNRGITRIRGTNYRSPHGIPIDLLDRMLIIST 355 (454)
T ss_pred cceEEEeeehhh-------------hhHHHHHHHHHhhhccCcEEEEEcCCceEEeecCCCCCCCCCcHHHhhhhheeec
Confidence 789999999999 778888888888743 22344444432 223344567889999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhhhcCCCcHHHHHHHHHHhh
Q 007723 455 SEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGS 515 (591)
Q Consensus 455 ~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i~~~~lp~~ai~lld~a~a 515 (591)
.+++.+++.+||+..+... ++.+++++++.+....... -.+-++.|+..+..
T Consensus 356 ~py~~~d~~~IL~iRc~EE----dv~m~~~A~d~Lt~i~~~t-----sLRYai~Lit~a~~ 407 (454)
T KOG2680|consen 356 QPYTEEDIKKILRIRCQEE----DVEMNPDALDLLTKIGEAT-----SLRYAIHLITAASL 407 (454)
T ss_pred ccCcHHHHHHHHHhhhhhh----ccccCHHHHHHHHHhhhhh-----hHHHHHHHHHHHHH
Confidence 9999999999998877765 8999999999998876421 01227888866653
No 218
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=1.8e-08 Score=111.02 Aligned_cols=178 Identities=16% Similarity=0.284 Sum_probs=126.7
Q ss_pred ccCCcHHHHHHHHHHHHhcCC---------CCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhccc
Q 007723 291 PVIGRETEIQRIIQILCRRTK---------NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGA 361 (591)
Q Consensus 291 ~vvG~~~~i~~l~~~L~~~~~---------~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~ 361 (591)
...+++.-+..+.+++..+.. ..+||.|+||||||++++++|+++ +..++++|+.++.+..
T Consensus 402 ~~~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~l----------g~h~~evdc~el~~~s 471 (953)
T KOG0736|consen 402 SPPGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASEL----------GLHLLEVDCYELVAES 471 (953)
T ss_pred CCccchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHh----------CCceEeccHHHHhhcc
Confidence 455677777777777765332 346899999999999999999998 8899999999998653
Q ss_pred cccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhccccc-------CCcEEEEecCChhH
Q 007723 362 KERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG-------RGELQCIASTTQDE 434 (591)
Q Consensus 362 ~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le-------~g~v~lI~att~~e 434 (591)
.+..+..+..++..++...+.|||+-+++-+...... +....++..+...+. .+.+++|++++..+
T Consensus 472 --~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dg-----ged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~ 544 (953)
T KOG0736|consen 472 --ASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDG-----GEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIE 544 (953)
T ss_pred --cchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCC-----chhHHHHHHHHHHHhcccccCCCCceEEEEeccccc
Confidence 4566777889999999999999999999988422111 112333333333332 45788999888754
Q ss_pred HHhhhcccHHHHccCc-ceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHH-HHHHHHHhHHh
Q 007723 435 HRTQFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEA-INAAVHLSARY 496 (591)
Q Consensus 435 ~~~~~~~d~aL~~Rf~-~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~a-l~~l~~~s~r~ 496 (591)
.+.+.+++-|. .|.++.|+.+++.+||+...... .+.+++ ++.++..+..+
T Consensus 545 -----~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~------~~n~~v~~k~~a~~t~gf 597 (953)
T KOG0736|consen 545 -----DLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHL------PLNQDVNLKQLARKTSGF 597 (953)
T ss_pred -----cCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhcc------ccchHHHHHHHHHhcCCC
Confidence 46677887664 59999999999999997765532 344333 55566555443
No 219
>PRK15115 response regulator GlrR; Provisional
Probab=98.89 E-value=4e-09 Score=115.30 Aligned_cols=198 Identities=19% Similarity=0.289 Sum_probs=120.4
Q ss_pred ccCCcHHHHHHHHHHHHh--cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhh--------cc
Q 007723 291 PVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM--------AG 360 (591)
Q Consensus 291 ~vvG~~~~i~~l~~~L~~--~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~--------~g 360 (591)
.++|....+.++.+.+.. ....+++|+|++|+|||++|+.+++..... +..++.+|+..+. .|
T Consensus 135 ~lig~s~~~~~~~~~~~~~a~~~~~vli~Ge~GtGk~~lA~~ih~~s~r~-------~~~f~~i~c~~~~~~~~~~~lfg 207 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNASPRA-------SKPFIAINCGALPEQLLESELFG 207 (444)
T ss_pred cccccCHHHHHHHHHHHhhccCCCeEEEEcCCcchHHHHHHHHHHhcCCC-------CCCeEEEeCCCCCHHHHHHHhcC
Confidence 467877777776665433 345678999999999999999999865332 4556677765431 11
Q ss_pred ccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCC-------------cEEEE
Q 007723 361 AKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-------------ELQCI 427 (591)
Q Consensus 361 ~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g-------------~v~lI 427 (591)
.. .|.+..........+..+.+++||||||+.| ..+.+..|...++.+ .+++|
T Consensus 208 ~~-~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l-------------~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii 273 (444)
T PRK15115 208 HA-RGAFTGAVSNREGLFQAAEGGTLFLDEIGDM-------------PAPLQVKLLRVLQERKVRPLGSNRDIDIDVRII 273 (444)
T ss_pred CC-cCCCCCCccCCCCcEEECCCCEEEEEccccC-------------CHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEE
Confidence 10 0000000000000112345789999999999 677788888777643 46888
Q ss_pred ecCChhHHHh--hhcccHHHHccCcceeecCCCHHHHH----HHHHHHHHHHHhhcC---CCCcHHHHHHHHHHh-HHhh
Q 007723 428 ASTTQDEHRT--QFEKDKALARRFQPVLISEPSQEDAV----RILLGLREKYEAHHN---CKFTLEAINAAVHLS-ARYI 497 (591)
Q Consensus 428 ~att~~e~~~--~~~~d~aL~~Rf~~i~i~~p~~~e~~----~iL~~~~~~~~~~~~---i~i~~~al~~l~~~s-~r~i 497 (591)
++|+.+.... .-.....|..|+..+.+..|+..++. .++..+..++...++ ..+++++++.+..+. .+.+
T Consensus 274 ~~~~~~l~~~~~~~~f~~~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNv 353 (444)
T PRK15115 274 SATHRDLPKAMARGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNV 353 (444)
T ss_pred EeCCCCHHHHHHcCCccHHHHHhhceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChH
Confidence 8887652111 11234667778887778888765444 444555555443333 258999999999886 3332
Q ss_pred hcCCCcHHHHHHHHHHhh
Q 007723 498 SDRYLPDKAIDLVDEAGS 515 (591)
Q Consensus 498 ~~~~lp~~ai~lld~a~a 515 (591)
+. ...++..++.
T Consensus 354 re------L~~~i~~~~~ 365 (444)
T PRK15115 354 RQ------LVNVIEQCVA 365 (444)
T ss_pred HH------HHHHHHHHHH
Confidence 22 3445555553
No 220
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.89 E-value=1.8e-08 Score=102.44 Aligned_cols=138 Identities=18% Similarity=0.123 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHhcCCCC-CeEecCCCCcHHHHHHHHHHHHHhCCCCccc------cCceEEEeehhhhhccccccchHHH
Q 007723 297 TEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPVFL------LSKRIMSLDMGLLMAGAKERGELEA 369 (591)
Q Consensus 297 ~~i~~l~~~L~~~~~~~-ilL~GppGvGKT~la~~lA~~l~~~~~p~~~------~~~~~~~ld~~~l~~g~~~~g~~~~ 369 (591)
...+.+...+.+.+.+| .+|+||+|+||+++|..+|+.+.+...+... ....++.+... |.. ..-..+
T Consensus 4 ~~~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~----~~~-~~I~id 78 (290)
T PRK05917 4 AAWEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQ----GKG-RLHSIE 78 (290)
T ss_pred HHHHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecC----CCC-CcCcHH
Confidence 35677888888766555 5699999999999999999999875433111 01122222111 100 001133
Q ss_pred HHHHHHHHHHh----cCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccC--CcEEEEecCChhHHHhhhcccH
Q 007723 370 RVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQCIASTTQDEHRTQFEKDK 443 (591)
Q Consensus 370 ~i~~i~~~~~~----~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~--g~v~lI~att~~e~~~~~~~d~ 443 (591)
.++.+.+.+.. ++..|++||++|.| +.+++|.|+..||+ +.+++|..|+..+ .+.+
T Consensus 79 qiR~l~~~~~~~p~e~~~kv~ii~~ad~m-------------t~~AaNaLLK~LEEPp~~~~fiL~~~~~~-----~ll~ 140 (290)
T PRK05917 79 TPRAIKKQIWIHPYESPYKIYIIHEADRM-------------TLDAISAFLKVLEDPPQHGVIILTSAKPQ-----RLPP 140 (290)
T ss_pred HHHHHHHHHhhCccCCCceEEEEechhhc-------------CHHHHHHHHHHhhcCCCCeEEEEEeCChh-----hCcH
Confidence 45666666543 45689999999999 78899999999985 3455555555432 4669
Q ss_pred HHHccCcceeecCC
Q 007723 444 ALARRFQPVLISEP 457 (591)
Q Consensus 444 aL~~Rf~~i~i~~p 457 (591)
+++|||+.+.|.++
T Consensus 141 TI~SRcq~~~~~~~ 154 (290)
T PRK05917 141 TIRSRSLSIHIPME 154 (290)
T ss_pred HHHhcceEEEccch
Confidence 99999999988865
No 221
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.87 E-value=4.3e-09 Score=114.44 Aligned_cols=256 Identities=15% Similarity=0.122 Sum_probs=144.9
Q ss_pred ccCCcHHHHHHHHHHHHhcC------------CCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhh
Q 007723 291 PVIGRETEIQRIIQILCRRT------------KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM 358 (591)
Q Consensus 291 ~vvG~~~~i~~l~~~L~~~~------------~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~ 358 (591)
.+.|.|+..+-|+-.|..++ .-||||+|.||||||.+.+.+++....+-.- .++.--. ..+.
T Consensus 430 sIye~edvKkglLLqLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yT---SGkGsSa---vGLT 503 (804)
T KOG0478|consen 430 SIYELEDVKKGLLLQLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYT---SGKGSSA---VGLT 503 (804)
T ss_pred hhhcccchhhhHHHHHhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceee---cCCccch---hcce
Confidence 46677776666554443321 1479999999999999999999977543211 0110000 0011
Q ss_pred ccccccchHHHHHHHHHHH---HHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCC-------------
Q 007723 359 AGAKERGELEARVTTLISE---IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG------------- 422 (591)
Q Consensus 359 ~g~~~~g~~~~~i~~i~~~---~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g------------- 422 (591)
++...-++ .++++-+ +.-++++|..|||+|.| +....+.|..+|+..
T Consensus 504 ayVtrd~d----tkqlVLesGALVLSD~GiCCIDEFDKM-------------~dStrSvLhEvMEQQTvSIAKAGII~sL 566 (804)
T KOG0478|consen 504 AYVTKDPD----TRQLVLESGALVLSDNGICCIDEFDKM-------------SDSTRSVLHEVMEQQTLSIAKAGIIASL 566 (804)
T ss_pred eeEEecCc----cceeeeecCcEEEcCCceEEchhhhhh-------------hHHHHHHHHHHHHHhhhhHhhcceeeec
Confidence 10000000 1111111 11256789999999999 444566677766532
Q ss_pred --cEEEEecCChhHH--------HhhhcccHHHHccCcc--eeecCCCHHHHHHHHHHHHHHHHhhc----CCCCcHHHH
Q 007723 423 --ELQCIASTTQDEH--------RTQFEKDKALARRFQP--VLISEPSQEDAVRILLGLREKYEAHH----NCKFTLEAI 486 (591)
Q Consensus 423 --~v~lI~att~~e~--------~~~~~~d~aL~~Rf~~--i~i~~p~~~e~~~iL~~~~~~~~~~~----~i~i~~~al 486 (591)
+.-++++.||.+- ...+.+.|+|++||+. +.+..|++...+.+-.++...|.... ...++-..+
T Consensus 567 NAR~SVLAaANP~~skynp~k~i~eNI~LpptLLSRFDLIylllD~~DE~~Dr~La~HivsLy~e~~~~~~~~~~d~~~l 646 (804)
T KOG0478|consen 567 NARCSVLAAANPIRSKYNPNKSIIENINLPPTLLSRFDLIFLLLDKPDERSDRRLADHIVALYPETGEKQGSEAIDMNLL 646 (804)
T ss_pred cccceeeeeeccccccCCCCCchhhccCCChhhhhhhcEEEEEecCcchhHHHHHHHHHHHhcccccccchhHHHhHHHH
Confidence 3467888885431 1234578999999994 57778888777778788777664311 122333445
Q ss_pred HHHHHHhHHhhhcCCCcHHHHHHHHHHhhHhhhhhhccc-h---hhhhhhhcCChHH-HHHHHHHHhhcchHHHHhhchh
Q 007723 487 NAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRK-K---EQQTCILSKPPDD-YWQEIRTVQAMHEVVQGSRLKY 561 (591)
Q Consensus 487 ~~l~~~s~r~i~~~~lp~~ai~lld~a~a~~~~~~~~~~-~---~~~i~~l~~~~~~-~~~~~~~~~~~~d~~~a~~~~~ 561 (591)
...+.++...+.-. +.+.+...+-++.-..+..+.... . ..+.+.|.+..++ ........+...|+++|..+.-
T Consensus 647 r~yi~yArk~i~p~-l~~ea~~~l~~ayvd~rk~~~~~~~itat~rQlesLiRlsEahak~r~s~~ve~~dV~eA~~l~R 725 (804)
T KOG0478|consen 647 RDYIRYARKNIHPA-LSPEASQALIQAYVDMRKIGEGAGQITATPRQLESLIRLSEAHAKMRLSNRVEEIDVEEAVRLLR 725 (804)
T ss_pred HHHHHHHhccCCcc-ccHHHHHHHHHHhhhhhhhcccccccchhHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHH
Confidence 55555555544333 344555555555433333322222 1 1445555555555 3444455788899999999876
Q ss_pred hHhhhccCC
Q 007723 562 DDVVASMGD 570 (591)
Q Consensus 562 ~~~~~~~~~ 570 (591)
+..+.++..
T Consensus 726 ~aL~~~a~d 734 (804)
T KOG0478|consen 726 EALKQSATD 734 (804)
T ss_pred HHhcccCCC
Confidence 655555443
No 222
>PRK08116 hypothetical protein; Validated
Probab=98.84 E-value=2e-08 Score=102.13 Aligned_cols=131 Identities=17% Similarity=0.229 Sum_probs=71.7
Q ss_pred CCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhcccc--ccchHHHHHHHHHHHHHhcCCeEEEEc
Q 007723 312 NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAK--ERGELEARVTTLISEIQKSGDVILFID 389 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~~--~~g~~~~~i~~i~~~~~~~~~~ILfID 389 (591)
.+++|+|++|+|||+||.++++.+... +..++.++...++...+ +.+........+++.+. ...+|+||
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~-------~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviD 185 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK-------GVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILD 185 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc-------CCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEe
Confidence 358999999999999999999998653 45677777766553211 10000111223344333 23499999
Q ss_pred CcchhhcCCCCCCCCCCccHHHHHhhcccccCCcEEEEecCChhHHHhhhcccHHHHccC----cceeecCCCH
Q 007723 390 EVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRF----QPVLISEPSQ 459 (591)
Q Consensus 390 Ei~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g~v~lI~att~~e~~~~~~~d~aL~~Rf----~~i~i~~p~~ 459 (591)
|++...... -....+.++|......+. .+|.+||...-.-....+..+.+|+ ..|.+..++.
T Consensus 186 Dlg~e~~t~-------~~~~~l~~iin~r~~~~~-~~IiTsN~~~~eL~~~~~~ri~sRl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 186 DLGAERDTE-------WAREKVYNIIDSRYRKGL-PTIVTTNLSLEELKNQYGKRIYDRILEMCTPVENEGKSY 251 (268)
T ss_pred cccCCCCCH-------HHHHHHHHHHHHHHHCCC-CEEEECCCCHHHHHHHHhHHHHHHHHHcCEEEEeeCcCh
Confidence 996541110 012223333333333333 3555555443111112467888884 3567766664
No 223
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.83 E-value=2.5e-08 Score=109.84 Aligned_cols=221 Identities=14% Similarity=0.124 Sum_probs=131.3
Q ss_pred chhcccccccCCCCccCCcHHHHHHHHHHHHhcC-----CCCCeEecCCCCcHHHHHHHHHHHHHhC----CCCccccCc
Q 007723 277 CVDLTARASEELIDPVIGRETEIQRIIQILCRRT-----KNNPILLGESGVGKTAIAEGLAIRIVQA----EVPVFLLSK 347 (591)
Q Consensus 277 ~~~l~~~~r~~~~~~vvG~~~~i~~l~~~L~~~~-----~~~ilL~GppGvGKT~la~~lA~~l~~~----~~p~~~~~~ 347 (591)
..+|+++|+|.++++++-+.+-++.+..+|...- ..-+||+|||||||||+++.||+++.-. ..|......
T Consensus 6 ~~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~~ 85 (519)
T PF03215_consen 6 SEPWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRES 85 (519)
T ss_pred cCccchhcCCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCcccc
Confidence 3679999999999999999998888888876522 2335789999999999999999997210 001110000
Q ss_pred eEEEeehhhhhccccccchHHHH---HHHH-HHHHH-----------hcCCeEEEEcCcchhhcCCCCCCCCCCccHHHH
Q 007723 348 RIMSLDMGLLMAGAKERGELEAR---VTTL-ISEIQ-----------KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDIS 412 (591)
Q Consensus 348 ~~~~ld~~~l~~g~~~~g~~~~~---i~~i-~~~~~-----------~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~ 412 (591)
.....|..... ....++..+ +..+ +...+ ...+.||+|||+-.++.. + ...+.
T Consensus 86 ~~~~~d~~s~~---~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~--------~-~~~f~ 153 (519)
T PF03215_consen 86 DNQEDDFESDF---NKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHR--------D-TSRFR 153 (519)
T ss_pred ccccccccccc---cccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccch--------h-HHHHH
Confidence 00000000000 000001111 1111 11001 124679999999877432 1 35667
Q ss_pred HhhcccccC--C-cEEEEecCCh-----hHHHh-----hhcccHHHHc--cCcceeecCCCHHHHHHHHHHHHHHHHhh-
Q 007723 413 NLLKPSLGR--G-ELQCIASTTQ-----DEHRT-----QFEKDKALAR--RFQPVLISEPSQEDAVRILLGLREKYEAH- 476 (591)
Q Consensus 413 n~L~~~le~--g-~v~lI~att~-----~e~~~-----~~~~d~aL~~--Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~- 476 (591)
+.|+.++.. . .+++|.+-+. ..+.. .--+.+.+.. ++..|.|.+....-+.+.|..++......
T Consensus 154 ~~L~~~l~~~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E~~~~ 233 (519)
T PF03215_consen 154 EALRQYLRSSRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILKKEARSS 233 (519)
T ss_pred HHHHHHHHcCCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHHhhhh
Confidence 777777753 2 4555555111 11100 0013456665 45579999999999899998887765221
Q ss_pred cCC-CC--cHHHHHHHHHHhHHhhhcCCCcHHHHHHHHHHhh
Q 007723 477 HNC-KF--TLEAINAAVHLSARYISDRYLPDKAIDLVDEAGS 515 (591)
Q Consensus 477 ~~i-~i--~~~al~~l~~~s~r~i~~~~lp~~ai~lld~a~a 515 (591)
.+. .. ..++++.|+..+.+.|+. ||.-|.-.|.
T Consensus 234 ~~~~~~p~~~~~l~~I~~~s~GDIRs------AIn~LQf~~~ 269 (519)
T PF03215_consen 234 SGKNKVPDKQSVLDSIAESSNGDIRS------AINNLQFWCL 269 (519)
T ss_pred cCCccCCChHHHHHHHHHhcCchHHH------HHHHHHHHhc
Confidence 121 22 245699999999888877 8999988775
No 224
>PRK14700 recombination factor protein RarA; Provisional
Probab=98.81 E-value=1.5e-08 Score=102.25 Aligned_cols=127 Identities=18% Similarity=0.254 Sum_probs=95.7
Q ss_pred cccccCCcEEEEecCChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHH--hhcCCCCcHHHHHHHHHHh
Q 007723 416 KPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYE--AHHNCKFTLEAINAAVHLS 493 (591)
Q Consensus 416 ~~~le~g~v~lI~att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~--~~~~i~i~~~al~~l~~~s 493 (591)
++.+|+|.+.+|||||.++ .|.++++|+|||.++.+.+++.+++..+|++.+.... ....+.+++++++.|+..+
T Consensus 1 Lp~vE~G~i~LIGATTENP---~f~vn~ALlSR~~v~~l~~L~~~di~~il~ral~~~~~~~~~~~~i~~~al~~ia~~a 77 (300)
T PRK14700 1 MPYVESGKIILIGATTENP---TYYLNDALVSRLFILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHNYN 77 (300)
T ss_pred CCCccCCcEEEEeecCCCc---cceecHhhhhhhheeeecCCCHHHHHHHHHHHHHhhhccCCcCCCcCHHHHHHHHHhc
Confidence 4678999999999999997 7899999999999999999999999999998776532 2235889999999999999
Q ss_pred HHhhhcCCCcHHHHHHHHHHhh-------------------Hhhhhhhccchh---hhhhhhcCC-----hHH--HHHHH
Q 007723 494 ARYISDRYLPDKAIDLVDEAGS-------------------RAHIELFKRKKE---QQTCILSKP-----PDD--YWQEI 544 (591)
Q Consensus 494 ~r~i~~~~lp~~ai~lld~a~a-------------------~~~~~~~~~~~~---~~i~~l~~~-----~~~--~~~~~ 544 (591)
.+..+. ++++|+.++. ..+...+++..+ +.+++++|+ |++ ||+..
T Consensus 78 ~GDaR~------aLN~LE~a~~~~~~~~~~~it~~~~~~~~~~~~~~yDk~gd~HYd~iSAf~KSiRGSDpDAAlYyLAr 151 (300)
T PRK14700 78 EGDCRK------ILNLLERMFLISTRGDEIYLNKELFDQAVGETSRDFHREGKEFYEQLSAFHKSVRGTDPDAAIFWLSV 151 (300)
T ss_pred CCHHHH------HHHHHHHHHhhccccCCCccCHHHHHHHHhHHHhcccCCcchhHHHHHHHHHHhhcCCccHHHHHHHH
Confidence 877543 5555554332 112233444444 889999999 666 67664
Q ss_pred HHHhhcc-hH
Q 007723 545 RTVQAMH-EV 553 (591)
Q Consensus 545 ~~~~~~~-d~ 553 (591)
.+..+ |.
T Consensus 152 --ml~~GEDp 159 (300)
T PRK14700 152 --MLDNGVDP 159 (300)
T ss_pred --HHHcCCCH
Confidence 35554 44
No 225
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.81 E-value=8e-09 Score=113.31 Aligned_cols=184 Identities=17% Similarity=0.232 Sum_probs=115.0
Q ss_pred CCccCCcHHHHHHHHHHHHh--cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhh--------
Q 007723 289 IDPVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM-------- 358 (591)
Q Consensus 289 ~~~vvG~~~~i~~l~~~L~~--~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~-------- 358 (591)
+..++|....+..+.+.+.. ....+++++|++||||+++|+.++...... +.+++.+|+..+.
T Consensus 142 ~~~ii~~S~~~~~~~~~~~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~-------~~~~~~i~c~~~~~~~~~~~l 214 (457)
T PRK11361 142 WGHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSRRA-------KGPFIKVNCAALPESLLESEL 214 (457)
T ss_pred ccceecccHHHhHHHHHHHHHcCCCcEEEEEcCCCccHHHHHHHHHHhCCCC-------CCCeEEEECCCCCHHHHHHHh
Confidence 44688888888777776544 445678999999999999999998865322 4456666765431
Q ss_pred ccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCC-------------cEE
Q 007723 359 AGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-------------ELQ 425 (591)
Q Consensus 359 ~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g-------------~v~ 425 (591)
.|.. .|.+..........+..+.+++||||||+.| ..+.++.|..+++.+ .++
T Consensus 215 fg~~-~~~~~~~~~~~~g~~~~a~~gtl~ld~i~~l-------------~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~r 280 (457)
T PRK11361 215 FGHE-KGAFTGAQTLRQGLFERANEGTLLLDEIGEM-------------PLVLQAKLLRILQEREFERIGGHQTIKVDIR 280 (457)
T ss_pred cCCC-CCCCCCCCCCCCCceEECCCCEEEEechhhC-------------CHHHHHHHHHHHhcCcEEeCCCCceeeeceE
Confidence 1110 0000000000001122356789999999999 667788887777543 368
Q ss_pred EEecCChhHHH--hhhcccHHHHccCcceeecCCCHHH----HHHHHHHHHHHHHhhcC---CCCcHHHHHHHHHHh
Q 007723 426 CIASTTQDEHR--TQFEKDKALARRFQPVLISEPSQED----AVRILLGLREKYEAHHN---CKFTLEAINAAVHLS 493 (591)
Q Consensus 426 lI~att~~e~~--~~~~~d~aL~~Rf~~i~i~~p~~~e----~~~iL~~~~~~~~~~~~---i~i~~~al~~l~~~s 493 (591)
+|++|+.+.-. ..-...+.|..|+..+.+..|+..+ +..++..+..++...++ +.+++++++.+..+.
T Consensus 281 ii~~t~~~l~~~~~~g~~~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~ 357 (457)
T PRK11361 281 IIAATNRDLQAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWS 357 (457)
T ss_pred EEEeCCCCHHHHHHcCCchHHHHHHhccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCC
Confidence 99998865311 1112446677788877777776644 44444455555544333 468999998888764
No 226
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.79 E-value=1.2e-08 Score=112.09 Aligned_cols=182 Identities=24% Similarity=0.329 Sum_probs=116.2
Q ss_pred CccCCcHHHHHHHHHHHHh--cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhh--------c
Q 007723 290 DPVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM--------A 359 (591)
Q Consensus 290 ~~vvG~~~~i~~l~~~L~~--~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~--------~ 359 (591)
..++|....+..+.+.+.. ....++++.|++||||+++|++++...... +.+++.+|+..+. .
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~-------~~~~~~~~c~~~~~~~~~~~lf 206 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSPRA-------NGPFIALNMAAIPKDLIESELF 206 (463)
T ss_pred cceeecCHHHHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHhCCCC-------CCCeEEEeCCCCCHHHHHHHhc
Confidence 3578888777777766544 344678999999999999999999865332 4556667765431 1
Q ss_pred cccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCC-------------cEEE
Q 007723 360 GAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-------------ELQC 426 (591)
Q Consensus 360 g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g-------------~v~l 426 (591)
|. ..|.+..........+..+.+++||||||+.| ..+.+..|+.+++.+ .+++
T Consensus 207 g~-~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l-------------~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~ri 272 (463)
T TIGR01818 207 GH-EKGAFTGANTRRQGRFEQADGGTLFLDEIGDM-------------PLDAQTRLLRVLADGEFYRVGGRTPIKVDVRI 272 (463)
T ss_pred CC-CCCCCCCcccCCCCcEEECCCCeEEEEchhhC-------------CHHHHHHHHHHHhcCcEEECCCCceeeeeeEE
Confidence 21 11111111111111122355789999999999 667788887777643 4588
Q ss_pred EecCChhHHH--hhhcccHHHHccCcceeecCCCH----HHHHHHHHHHHHHHHhhcC---CCCcHHHHHHHHHH
Q 007723 427 IASTTQDEHR--TQFEKDKALARRFQPVLISEPSQ----EDAVRILLGLREKYEAHHN---CKFTLEAINAAVHL 492 (591)
Q Consensus 427 I~att~~e~~--~~~~~d~aL~~Rf~~i~i~~p~~----~e~~~iL~~~~~~~~~~~~---i~i~~~al~~l~~~ 492 (591)
|++|+.+.-. ..-...+.|..|+..+.+..|+. +++..++..++.++...++ ..+++++++.+..+
T Consensus 273 i~~~~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~ 347 (463)
T TIGR01818 273 VAATHQNLEALVRQGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQL 347 (463)
T ss_pred EEeCCCCHHHHHHcCCcHHHHHHHhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhC
Confidence 8888765311 11223467888887656665553 5666666666666655554 47899999999887
No 227
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.78 E-value=6.9e-08 Score=107.79 Aligned_cols=186 Identities=16% Similarity=0.109 Sum_probs=119.3
Q ss_pred CCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeeh----hhhhccccccchHHHHHHH---HH--HHHHh
Q 007723 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM----GLLMAGAKERGELEARVTT---LI--SEIQK 380 (591)
Q Consensus 310 ~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~----~~l~~g~~~~g~~~~~i~~---i~--~~~~~ 380 (591)
...+++|.|++|+|||+++++++..+.. . .+|..+.. ..++ | .++++..++. .+ ..+..
T Consensus 24 ~~gGv~i~g~~G~~ks~~~r~l~~llp~-~-------~p~r~~p~~~t~~~L~-G---g~Dl~~~l~~g~~~~~pGlla~ 91 (584)
T PRK13406 24 GLGGVVLRARAGPVRDRWLAALRALLPA-G-------TPLRRLPPGIADDRLL-G---GLDLAATLRAGRPVAQRGLLAE 91 (584)
T ss_pred ccceEEEEcCCCcHHHHHHHHHHHhcCC-C-------CCcccCCCCCcHHHcc-C---CchHHhHhhcCCcCCCCCceee
Confidence 5678999999999999999999988743 1 12222211 1122 1 1222222211 00 11224
Q ss_pred cCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCC---------------cEEEEecCChhHHHhhhcccHHH
Q 007723 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG---------------ELQCIASTTQDEHRTQFEKDKAL 445 (591)
Q Consensus 381 ~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g---------------~v~lI~att~~e~~~~~~~d~aL 445 (591)
++++||||||+..+ ...+++.|+..|+.| .+++|++.+..+|. ..+.++|
T Consensus 92 Ah~GvL~lDe~n~~-------------~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~--~~L~~~l 156 (584)
T PRK13406 92 ADGGVLVLAMAERL-------------EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEED--ERAPAAL 156 (584)
T ss_pred ccCCEEEecCcccC-------------CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcc--cCCCHHh
Confidence 67889999999999 778899999999876 45778865555554 4577999
Q ss_pred HccCc-ceeecCCCHHHHHH------HHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhhhcCCCcHHHHHHHHHHhhHhh
Q 007723 446 ARRFQ-PVLISEPSQEDAVR------ILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAH 518 (591)
Q Consensus 446 ~~Rf~-~i~i~~p~~~e~~~------iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i~~~~lp~~ai~lld~a~a~~~ 518 (591)
.+||. .|.+..|+..+... -+.....++ .++.++++.+++++..+..+--. -+...+.++.-|.+.+.
T Consensus 157 LDRf~l~v~v~~~~~~~~~~~~~~~~~I~~AR~rl---~~v~v~~~~l~~i~~~~~~~gv~--S~Ra~i~llraARa~Aa 231 (584)
T PRK13406 157 ADRLAFHLDLDGLALRDAREIPIDADDIAAARARL---PAVGPPPEAIAALCAAAAALGIA--SLRAPLLALRAARAAAA 231 (584)
T ss_pred HhheEEEEEcCCCChHHhcccCCCHHHHHHHHHHH---ccCCCCHHHHHHHHHHHHHhCCC--CcCHHHHHHHHHHHHHH
Confidence 99998 58888887654321 122222233 37888999888888777754211 24456777777777777
Q ss_pred hhhhccchh
Q 007723 519 IELFKRKKE 527 (591)
Q Consensus 519 ~~~~~~~~~ 527 (591)
+.+.+....
T Consensus 232 L~Gr~~V~~ 240 (584)
T PRK13406 232 LAGRTAVEE 240 (584)
T ss_pred HcCCCCCCH
Confidence 766655444
No 228
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.77 E-value=4.1e-08 Score=87.90 Aligned_cols=121 Identities=22% Similarity=0.285 Sum_probs=69.8
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhcc------------ccccchHHHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAG------------AKERGELEARVTTLISEI 378 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g------------~~~~g~~~~~i~~i~~~~ 378 (591)
..+++|+||||||||++++.++..+.... ..++.++....... ..........+..++..+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG-------GGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALA 74 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC-------CCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999884322 23555554432211 111123334455666666
Q ss_pred HhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHH-----HhhcccccCCcEEEEecCChhHHHhhhcccHHHHccCc
Q 007723 379 QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDIS-----NLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQ 450 (591)
Q Consensus 379 ~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~-----n~L~~~le~g~v~lI~att~~e~~~~~~~d~aL~~Rf~ 450 (591)
......+|||||++.+...... .... ..+..........+|++++.. ....+..+..|+.
T Consensus 75 ~~~~~~viiiDei~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~~~ 139 (148)
T smart00382 75 RKLKPDVLILDEITSLLDAEQE--------ALLLLLEELRLLLLLKSEKNLTVILTTNDE----KDLGPALLRRRFD 139 (148)
T ss_pred HhcCCCEEEEECCcccCCHHHH--------HHHHhhhhhHHHHHHHhcCCCEEEEEeCCC----ccCchhhhhhccc
Confidence 6555689999999999432110 0000 011222234567788888851 1234455555665
No 229
>PF02861 Clp_N: Clp amino terminal domain; InterPro: IPR004176 This short domain is found in one or two copies at the amino terminus of ClpA and ClpB proteins from bacteria and eukaryotes. The function of these domains is uncertain but they may form a protein binding site []. The proteins are thought to be subunits of ATP-dependent proteases which act as chaperones to target the proteases to substrates.; GO: 0019538 protein metabolic process; PDB: 3FH2_A 3ZRJ_A 3ZRI_A 1QVR_C 3FES_C 2Y1R_F 3PXG_D 2Y1Q_A 3PXI_C 2K77_A ....
Probab=98.75 E-value=1.2e-08 Score=76.89 Aligned_cols=51 Identities=22% Similarity=0.334 Sum_probs=46.3
Q ss_pred HHHHHHHcCCCCcCHHHHHHHhhcCCCc--HHHHHHCCCCHHHHHHHHHHHhh
Q 007723 96 SQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAREAVVSIWH 146 (591)
Q Consensus 96 A~~~A~~~~~~~i~~eHLLlaLl~~~~~--~~~L~~~gi~~~~l~~~~~~~~~ 146 (591)
|+++|++++|.+|++||||++|+.++++ .++|+.+|+|++.++++++..++
T Consensus 1 A~~~A~~~~~~~i~~eHlL~all~~~~~~~~~il~~~~id~~~l~~~i~~~lg 53 (53)
T PF02861_consen 1 AQELARERGHQYISPEHLLLALLEDPDSIAARILKKLGIDPEQLKAAIEKALG 53 (53)
T ss_dssp HHHHHHHTTBSSE-HHHHHHHHHHHTTSHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred CHHHHHHcCCCcccHHHHHHHHHhhhhHHHHHHHHHcCCCHHHHHHHHHHHhC
Confidence 6899999999999999999999998877 88999999999999999988764
No 230
>PF13173 AAA_14: AAA domain
Probab=98.74 E-value=2e-08 Score=90.48 Aligned_cols=124 Identities=23% Similarity=0.291 Sum_probs=75.7
Q ss_pred CCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCc
Q 007723 312 NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEV 391 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi 391 (591)
..++|+||.||||||+++.+++.+. ...+++.+++......... ... +...+.+....+..+||||||
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~--------~~~~~~yi~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~i~iDEi 70 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL--------PPENILYINFDDPRDRRLA--DPD--LLEYFLELIKPGKKYIFIDEI 70 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc--------ccccceeeccCCHHHHHHh--hhh--hHHHHHHhhccCCcEEEEehh
Confidence 4578999999999999999998774 1345666666543321000 000 122222222236789999999
Q ss_pred chhhcCCCCCCCCCCccHHHHHhhcccccCC-cEEEEecCChhHHHhhhcccHHHHccCcceeecCCCHHHH
Q 007723 392 HTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-ELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDA 462 (591)
Q Consensus 392 ~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g-~v~lI~att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~ 462 (591)
+.+- +....++...+.+ .+.+|.++...... .......+..|...+.+.+.+..|.
T Consensus 71 q~~~--------------~~~~~lk~l~d~~~~~~ii~tgS~~~~l-~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 71 QYLP--------------DWEDALKFLVDNGPNIKIILTGSSSSLL-SKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred hhhc--------------cHHHHHHHHHHhccCceEEEEccchHHH-hhcccccCCCeEEEEEECCCCHHHh
Confidence 9981 3455555555544 45666655543311 1133466777888899999988763
No 231
>PRK08181 transposase; Validated
Probab=98.74 E-value=3.8e-08 Score=99.78 Aligned_cols=72 Identities=17% Similarity=0.332 Sum_probs=49.0
Q ss_pred CCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhccc---cccchHHHHHHHHHHHHHhcCCeEE
Q 007723 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGA---KERGELEARVTTLISEIQKSGDVIL 386 (591)
Q Consensus 310 ~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~---~~~g~~~~~i~~i~~~~~~~~~~IL 386 (591)
...|++|+||||||||+|+.++++.+... +..++.+++..++... ...+. ...++..+. ...+|
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~-------g~~v~f~~~~~L~~~l~~a~~~~~----~~~~l~~l~--~~dLL 171 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIEN-------GWRVLFTRTTDLVQKLQVARRELQ----LESAIAKLD--KFDLL 171 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHc-------CCceeeeeHHHHHHHHHHHHhCCc----HHHHHHHHh--cCCEE
Confidence 46789999999999999999999988542 4566777766655321 11112 222333333 34599
Q ss_pred EEcCcchh
Q 007723 387 FIDEVHTL 394 (591)
Q Consensus 387 fIDEi~~L 394 (591)
+|||++.+
T Consensus 172 IIDDlg~~ 179 (269)
T PRK08181 172 ILDDLAYV 179 (269)
T ss_pred EEeccccc
Confidence 99999987
No 232
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.74 E-value=1e-08 Score=114.45 Aligned_cols=254 Identities=14% Similarity=0.153 Sum_probs=148.4
Q ss_pred CCCccCCcHHHHHHHHHHHHhc------------CCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehh
Q 007723 288 LIDPVIGRETEIQRIIQILCRR------------TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMG 355 (591)
Q Consensus 288 ~~~~vvG~~~~i~~l~~~L~~~------------~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~ 355 (591)
-...+.|.+...+.+.-.|... ..-|+||+|.||||||.|.+.+++....+- +..+..-....+.
T Consensus 284 iaPsIyG~e~VKkAilLqLfgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~v---ytsgkgss~~GLT 360 (682)
T COG1241 284 IAPSIYGHEDVKKAILLQLFGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGV---YTSGKGSSAAGLT 360 (682)
T ss_pred hcccccCcHHHHHHHHHHhcCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceE---EEccccccccCce
Confidence 3456889998666555444331 125899999999999999999998763311 0000000000000
Q ss_pred hhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCCc------------
Q 007723 356 LLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGE------------ 423 (591)
Q Consensus 356 ~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g~------------ 423 (591)
+.+.-.+..|+|.-.- ..+.-++++|.+|||++.+ ...-.+.|...|++..
T Consensus 361 Aav~rd~~tge~~Lea----GALVlAD~Gv~cIDEfdKm-------------~~~dr~aihEaMEQQtIsIaKAGI~atL 423 (682)
T COG1241 361 AAVVRDKVTGEWVLEA----GALVLADGGVCCIDEFDKM-------------NEEDRVAIHEAMEQQTISIAKAGITATL 423 (682)
T ss_pred eEEEEccCCCeEEEeC----CEEEEecCCEEEEEeccCC-------------ChHHHHHHHHHHHhcEeeecccceeeec
Confidence 0000000111110000 0011256789999999998 4455666777776432
Q ss_pred ---EEEEecCChhH--H------HhhhcccHHHHccCcc--eeecCCCHHHHHHHHHHHHHHHHhhcCCCC---------
Q 007723 424 ---LQCIASTTQDE--H------RTQFEKDKALARRFQP--VLISEPSQEDAVRILLGLREKYEAHHNCKF--------- 481 (591)
Q Consensus 424 ---v~lI~att~~e--~------~~~~~~d~aL~~Rf~~--i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i--------- 481 (591)
.-+++|+||.. | ...+.++++|++||+. +....|+.+....+..++...+.....-..
T Consensus 424 nARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~~~~ 503 (682)
T COG1241 424 NARCSVLAAANPKFGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISLDGVDEV 503 (682)
T ss_pred chhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHhhCCeeEEecCCCCccchHHHHHHHHHHHhcccccccccccccccc
Confidence 24566777653 1 1345678999999994 566778877777777776665532111111
Q ss_pred ---cHHHHHHHHHHhHHhhhcCCCcHHHHHHHHHHhhHhhhhhh----cc--ch-hhhhhhhcCChHH-HHHHHHHHhhc
Q 007723 482 ---TLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELF----KR--KK-EQQTCILSKPPDD-YWQEIRTVQAM 550 (591)
Q Consensus 482 ---~~~al~~l~~~s~r~i~~~~lp~~ai~lld~a~a~~~~~~~----~~--~~-~~~i~~l~~~~~~-~~~~~~~~~~~ 550 (591)
+.+.+...+.++.+++. ..+++.|...|....-..|-... .. +. ..+.+.+....++ +.......|+.
T Consensus 504 ~~~~~~~lrkYI~YAR~~v~-P~lt~ea~e~l~~~Yv~~Rk~~~~~~~~~~~piT~RqLEsiiRLaeA~Ak~rLS~~V~~ 582 (682)
T COG1241 504 EERDFELLRKYISYARKNVT-PVLTEEAREELEDYYVEMRKKSALVEEKRTIPITARQLESIIRLAEAHAKMRLSDVVEE 582 (682)
T ss_pred ccCcHHHHHHHHHHHhccCC-cccCHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHHHHHHHHhhhccCCCCH
Confidence 46667788888877642 34778888887776544443221 11 11 1444555555566 56677778999
Q ss_pred chHHHHhhchhh
Q 007723 551 HEVVQGSRLKYD 562 (591)
Q Consensus 551 ~d~~~a~~~~~~ 562 (591)
+|.++|.++...
T Consensus 583 eD~~eAi~lv~~ 594 (682)
T COG1241 583 EDVDEAIRLVDF 594 (682)
T ss_pred HHHHHHHHHHHH
Confidence 999999998653
No 233
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.74 E-value=3.3e-08 Score=98.83 Aligned_cols=103 Identities=17% Similarity=0.268 Sum_probs=61.8
Q ss_pred ccccCCCCccC----CcHHHHHHHHHHHHhc--CCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhh
Q 007723 283 RASEELIDPVI----GRETEIQRIIQILCRR--TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGL 356 (591)
Q Consensus 283 ~~r~~~~~~vv----G~~~~i~~l~~~L~~~--~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~ 356 (591)
.++..+|+.+. ++...+..+.+.+... ...+++|+|+||||||+|+.+++..+... +..++.+++..
T Consensus 65 ~~~~~tFdnf~~~~~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~-------g~~v~~it~~~ 137 (244)
T PRK07952 65 LHQNCSFENYRVECEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLR-------GKSVLIITVAD 137 (244)
T ss_pred cccCCccccccCCCchHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhc-------CCeEEEEEHHH
Confidence 33444565554 2233445555554432 23578999999999999999999998542 56777778777
Q ss_pred hhcccccc-chHHHHHHHHHHHHHhcCCeEEEEcCcchh
Q 007723 357 LMAGAKER-GELEARVTTLISEIQKSGDVILFIDEVHTL 394 (591)
Q Consensus 357 l~~g~~~~-g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L 394 (591)
++...+.. .........+++.+. ...+|+|||++..
T Consensus 138 l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~ 174 (244)
T PRK07952 138 IMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQ 174 (244)
T ss_pred HHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCC
Confidence 65321100 000011223444443 3459999999887
No 234
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.69 E-value=4.5e-08 Score=106.85 Aligned_cols=182 Identities=19% Similarity=0.299 Sum_probs=114.2
Q ss_pred ccCCcHHHHHHHHHHHHh--cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhh--------cc
Q 007723 291 PVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM--------AG 360 (591)
Q Consensus 291 ~vvG~~~~i~~l~~~L~~--~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~--------~g 360 (591)
.++|....+..+...+.. ....+++++|++|+||+++++++....... +.+++.+|+..+. .|
T Consensus 140 ~lig~s~~~~~~~~~i~~~~~~~~~vli~ge~g~gk~~~a~~ih~~s~~~-------~~~~i~~~c~~~~~~~~~~~lfg 212 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSARS-------EKPLVTLNCAALNESLLESELFG 212 (441)
T ss_pred ceEecCHHHHHHHHHHhhccCCCCeEEEEecCCCCHHHHHHHHHHcCCCC-------CCCeeeeeCCCCCHHHHHHHhcC
Confidence 367777766666554332 445778999999999999999998865332 4566777765432 11
Q ss_pred ccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCC-------------cEEEE
Q 007723 361 AKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-------------ELQCI 427 (591)
Q Consensus 361 ~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g-------------~v~lI 427 (591)
. ..|.+..........+..+.+++||||||+.| ..+.+..|...++.+ .+++|
T Consensus 213 ~-~~~~~~~~~~~~~g~~~~a~~gtl~ldei~~l-------------~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii 278 (441)
T PRK10365 213 H-EKGAFTGADKRREGRFVEADGGTLFLDEIGDI-------------SPMMQVRLLRAIQEREVQRVGSNQTISVDVRLI 278 (441)
T ss_pred C-CCCCcCCCCcCCCCceeECCCCEEEEeccccC-------------CHHHHHHHHHHHccCcEEeCCCCceeeeceEEE
Confidence 1 01110000000001122356789999999999 667788888777654 35789
Q ss_pred ecCChhHHHh--hhcccHHHHccCcceeecCCCHH----HHHHHHHHHHHHHHhhcC---CCCcHHHHHHHHHHh
Q 007723 428 ASTTQDEHRT--QFEKDKALARRFQPVLISEPSQE----DAVRILLGLREKYEAHHN---CKFTLEAINAAVHLS 493 (591)
Q Consensus 428 ~att~~e~~~--~~~~d~aL~~Rf~~i~i~~p~~~----e~~~iL~~~~~~~~~~~~---i~i~~~al~~l~~~s 493 (591)
++|+.+.... .-.....|..||..+.+..|+.. ++..++..+..++...++ ..+++++++.+..+.
T Consensus 279 ~~t~~~~~~~~~~~~~~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~ 353 (441)
T PRK10365 279 AATHRDLAAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYD 353 (441)
T ss_pred EeCCCCHHHHHHcCCchHHHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCC
Confidence 8887764321 11245667778887777777764 444555555555544333 358999999988875
No 235
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.67 E-value=1.9e-07 Score=95.31 Aligned_cols=145 Identities=13% Similarity=0.152 Sum_probs=96.3
Q ss_pred CcHHHHHHHHHHHHhcCCCC-CeEecCCCCcHHHHHHHHHHHHHhCCCCc--cc---c---------CceEEEeehhhhh
Q 007723 294 GRETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPV--FL---L---------SKRIMSLDMGLLM 358 (591)
Q Consensus 294 G~~~~i~~l~~~L~~~~~~~-ilL~GppGvGKT~la~~lA~~l~~~~~p~--~~---~---------~~~~~~ld~~~l~ 358 (591)
+|...++.+...+.+.+.+| .||+|| +||+++|+.+|+.+.+.+... .. . ...++.+...
T Consensus 6 ~q~~~~~~L~~~~~~~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~--- 80 (290)
T PRK07276 6 KQPKVFQRFQTILEQDRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQ--- 80 (290)
T ss_pred HHHHHHHHHHHHHHcCCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCC---
Confidence 35667888888888877655 588895 789999999999997754210 00 0 1122222211
Q ss_pred ccccccchHHHHHHHHHHHHHh----cCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCC--cEEEEecCCh
Q 007723 359 AGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG--ELQCIASTTQ 432 (591)
Q Consensus 359 ~g~~~~g~~~~~i~~i~~~~~~----~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g--~v~lI~att~ 432 (591)
|. .--.+.++.+...+.. ++..|++||++|.| +..++|.|+..||+. +..+|..|+.
T Consensus 81 -~~---~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m-------------~~~AaNaLLKtLEEPp~~t~~iL~t~~ 143 (290)
T PRK07276 81 -GQ---VIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKM-------------HVNAANSLLKVIEEPQSEIYIFLLTND 143 (290)
T ss_pred -CC---cCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhc-------------CHHHHHHHHHHhcCCCCCeEEEEEECC
Confidence 10 1113446666665543 45689999999999 778999999999853 3555655544
Q ss_pred hHHHhhhcccHHHHccCcceeecCCCHHHHHHHH
Q 007723 433 DEHRTQFEKDKALARRFQPVLISEPSQEDAVRIL 466 (591)
Q Consensus 433 ~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL 466 (591)
.+ .+-|+++|||+.|.|.. +.++..++|
T Consensus 144 ~~-----~lLpTI~SRcq~i~f~~-~~~~~~~~L 171 (290)
T PRK07276 144 EN-----KVLPTIKSRTQIFHFPK-NEAYLIQLL 171 (290)
T ss_pred hh-----hCchHHHHcceeeeCCC-cHHHHHHHH
Confidence 32 46699999999999965 566655555
No 236
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.65 E-value=3.4e-08 Score=107.79 Aligned_cols=183 Identities=17% Similarity=0.242 Sum_probs=117.7
Q ss_pred CCcHHHHHHHHHHHHh--cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeeh-hhhhccccccchHHH
Q 007723 293 IGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM-GLLMAGAKERGELEA 369 (591)
Q Consensus 293 vG~~~~i~~l~~~L~~--~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~-~~l~~g~~~~g~~~~ 369 (591)
++.+..++.+...+.+ ...-++++.|++||||-.++++|.+... ...|....+|..+.-++ .+.+.|+- .|.|+.
T Consensus 316 ~~~d~s~a~l~rk~~rv~~~~~pvll~GEtGtGKe~laraiH~~s~-~~gpfvAvNCaAip~~liesELFGy~-~GafTg 393 (606)
T COG3284 316 PLLDPSRATLLRKAERVAATDLPVLLQGETGTGKEVLARAIHQNSE-AAGPFVAVNCAAIPEALIESELFGYV-AGAFTG 393 (606)
T ss_pred cccCHHHHHHHHHHHHHhhcCCCeEecCCcchhHHHHHHHHHhccc-ccCCeEEEEeccchHHhhhHHHhccC-cccccc
Confidence 4677778877776665 4456789999999999999999999875 55554444443332221 12223321 233321
Q ss_pred -HHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCC------------cEEEEecCChhHHH
Q 007723 370 -RVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG------------ELQCIASTTQDEHR 436 (591)
Q Consensus 370 -~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g------------~v~lI~att~~e~~ 436 (591)
+.+.....+.+++++.||+|||..| ..++|..|+.+|+++ .+++|+||+.+- .
T Consensus 394 a~~kG~~g~~~~A~gGtlFldeIgd~-------------p~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl-~ 459 (606)
T COG3284 394 ARRKGYKGKLEQADGGTLFLDEIGDM-------------PLALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDL-A 459 (606)
T ss_pred chhccccccceecCCCccHHHHhhhc-------------hHHHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcCH-H
Confidence 1122223344577899999999999 788999999999865 368899988752 2
Q ss_pred hhh---cccHHHHccCcceeecCCCHHHHHH---HHHHHHHHHHhhcCCCCcHHHHHHHHHH
Q 007723 437 TQF---EKDKALARRFQPVLISEPSQEDAVR---ILLGLREKYEAHHNCKFTLEAINAAVHL 492 (591)
Q Consensus 437 ~~~---~~d~aL~~Rf~~i~i~~p~~~e~~~---iL~~~~~~~~~~~~i~i~~~al~~l~~~ 492 (591)
... ..-..|.-|+..+.|..|+..++.. .|..+..++. ...++++++++..+..+
T Consensus 460 ~lv~~g~fredLyyrL~~~~i~lP~lr~R~d~~~~l~~~~~~~~-~~~~~l~~~~~~~l~~~ 520 (606)
T COG3284 460 QLVEQGRFREDLYYRLNAFVITLPPLRERSDRIPLLDRILKREN-DWRLQLDDDALARLLAY 520 (606)
T ss_pred HHHHcCCchHHHHHHhcCeeeccCchhcccccHHHHHHHHHHcc-CCCccCCHHHHHHHHhC
Confidence 221 1234555588877777787655444 3433333332 25689999999888765
No 237
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.65 E-value=1.3e-09 Score=114.21 Aligned_cols=244 Identities=17% Similarity=0.202 Sum_probs=128.7
Q ss_pred ccCCcHHHHHHHHHHHHh------------cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehh---
Q 007723 291 PVIGRETEIQRIIQILCR------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMG--- 355 (591)
Q Consensus 291 ~vvG~~~~i~~l~~~L~~------------~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~--- 355 (591)
.++|.+.....+.-.|.. +..-|+||+|.||+|||.|.+.+++.... .++..-.+
T Consensus 25 ~i~g~~~iK~aill~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr----------~v~~~g~~~s~ 94 (331)
T PF00493_consen 25 SIYGHEDIKKAILLQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPR----------SVYTSGKGSSA 94 (331)
T ss_dssp TTTT-HHHHHHHCCCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SS----------EEEEECCGSTC
T ss_pred cCcCcHHHHHHHHHHHHhccccccccccccccccceeeccchhhhHHHHHHHHHhhCCc----------eEEECCCCccc
Confidence 478887765554433322 12248899999999999999977654311 11111000
Q ss_pred -hhhcc---ccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCCc--------
Q 007723 356 -LLMAG---AKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGE-------- 423 (591)
Q Consensus 356 -~l~~g---~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g~-------- 423 (591)
.+.+. ....|+|. ++. ..+-.++++|++|||++.+ ..+..+.|..+|+.+.
T Consensus 95 ~gLta~~~~d~~~~~~~--lea--Galvlad~GiccIDe~dk~-------------~~~~~~~l~eaMEqq~isi~kagi 157 (331)
T PF00493_consen 95 AGLTASVSRDPVTGEWV--LEA--GALVLADGGICCIDEFDKM-------------KEDDRDALHEAMEQQTISIAKAGI 157 (331)
T ss_dssp CCCCEEECCCGGTSSEC--EEE---HHHHCTTSEEEECTTTT---------------CHHHHHHHHHHHCSCEEECTSSS
T ss_pred CCccceeccccccceeE--EeC--CchhcccCceeeecccccc-------------cchHHHHHHHHHHcCeeccchhhh
Confidence 01100 00112110 000 0112367889999999999 4445677777777543
Q ss_pred -------EEEEecCChhHHH--------hhhcccHHHHccCcce--eecCCCHHHHHHHHHHHHHHHHhhc---------
Q 007723 424 -------LQCIASTTQDEHR--------TQFEKDKALARRFQPV--LISEPSQEDAVRILLGLREKYEAHH--------- 477 (591)
Q Consensus 424 -------v~lI~att~~e~~--------~~~~~d~aL~~Rf~~i--~i~~p~~~e~~~iL~~~~~~~~~~~--------- 477 (591)
..+++++||..-+ ..+.+.++|.+||+.| ....++.+....+..++........
T Consensus 158 ~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~ 237 (331)
T PF00493_consen 158 VTTLNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLSRFDLIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKK 237 (331)
T ss_dssp EEEEE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHCC-SEEECC--TTT-HHHHHHHHHHHTTT---S--------S
T ss_pred cccccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHhhcCEEEEeccccccccccccceEEEeccccccccccccccc
Confidence 4778888876421 1234678999999953 3466776666666665554432221
Q ss_pred -CCCCcHHHHHHHHHHhHHhhhcCCCcHHHHHHHHHHhhHhhhhhh--ccchh---hhhhhhcCChHH-HHHHHHHHhhc
Q 007723 478 -NCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELF--KRKKE---QQTCILSKPPDD-YWQEIRTVQAM 550 (591)
Q Consensus 478 -~i~i~~~al~~l~~~s~r~i~~~~lp~~ai~lld~a~a~~~~~~~--~~~~~---~~i~~l~~~~~~-~~~~~~~~~~~ 550 (591)
...++.+.+...+.+++.++.- .+++.|.++|.......|.... ..... .+.+.|.+.-++ ........|+.
T Consensus 238 ~~~~~~~~~lr~yI~yar~~~~P-~ls~ea~~~I~~~Yv~lR~~~~~~~~~~~iT~R~LeSLIRLseA~AKl~lr~~V~~ 316 (331)
T PF00493_consen 238 NDKPISEDLLRKYIAYARQNIHP-VLSEEAKELIINYYVELRKESKSNNKSIPITIRQLESLIRLSEAHAKLRLRDEVTE 316 (331)
T ss_dssp SS-TT-HCCCHHHHHHHHHHC---EE-HHCHHHHHHHHCCCCHCHHCHSS-B-SSCCCCCHHHHHHHHHHHCTTSSECSH
T ss_pred cCCccCHHHHHHHHHHHHhhccc-ccCHHHHHHHHHHHHHhcccccccccccccchhhHHHHHHHHHHHHHHhccCceeH
Confidence 1357778888888888744322 4788999999888765554442 11111 223334444444 45556677999
Q ss_pred chHHHHhhchhh
Q 007723 551 HEVVQGSRLKYD 562 (591)
Q Consensus 551 ~d~~~a~~~~~~ 562 (591)
+|++.|..+...
T Consensus 317 ~Dv~~Ai~L~~~ 328 (331)
T PF00493_consen 317 EDVEEAIRLFEE 328 (331)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999887543
No 238
>PRK06526 transposase; Provisional
Probab=98.64 E-value=1.3e-07 Score=95.38 Aligned_cols=72 Identities=33% Similarity=0.499 Sum_probs=46.1
Q ss_pred CCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhccc---cccchHHHHHHHHHHHHHhcCCeEE
Q 007723 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGA---KERGELEARVTTLISEIQKSGDVIL 386 (591)
Q Consensus 310 ~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~---~~~g~~~~~i~~i~~~~~~~~~~IL 386 (591)
...|++|+||||||||+|+.+|+..+... +..++...+..++... ...+.... .+..+ ....+|
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~-------g~~v~f~t~~~l~~~l~~~~~~~~~~~----~l~~l--~~~dlL 163 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQA-------GHRVLFATAAQWVARLAAAHHAGRLQA----ELVKL--GRYPLL 163 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHC-------CCchhhhhHHHHHHHHHHHHhcCcHHH----HHHHh--ccCCEE
Confidence 56789999999999999999999988653 3344444444443211 11222222 22222 234699
Q ss_pred EEcCcchh
Q 007723 387 FIDEVHTL 394 (591)
Q Consensus 387 fIDEi~~L 394 (591)
+|||++.+
T Consensus 164 IIDD~g~~ 171 (254)
T PRK06526 164 IVDEVGYI 171 (254)
T ss_pred EEcccccC
Confidence 99999987
No 239
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.64 E-value=8.1e-08 Score=86.31 Aligned_cols=109 Identities=18% Similarity=0.262 Sum_probs=67.6
Q ss_pred CCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhh------------cccc--ccchHHHHHHHHH
Q 007723 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM------------AGAK--ERGELEARVTTLI 375 (591)
Q Consensus 310 ~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~------------~g~~--~~g~~~~~i~~i~ 375 (591)
....++++||+|+|||++++.+++.+........ ...++.+++.... .+.. .........+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~ 80 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKN--HPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLI 80 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCC--CEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccC--CCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHH
Confidence 4567899999999999999999998753110000 3455666654332 0111 1123445555555
Q ss_pred HHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCCcEEEEecCCh
Q 007723 376 SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQ 432 (591)
Q Consensus 376 ~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g~v~lI~att~ 432 (591)
+.+......+|+|||+|.|. .....+.|+..+++..+.+|.+.++
T Consensus 81 ~~l~~~~~~~lviDe~~~l~------------~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 81 DALDRRRVVLLVIDEADHLF------------SDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHCTEEEEEEETTHHHH------------THHHHHHHHHHTCSCBEEEEEEESS
T ss_pred HHHHhcCCeEEEEeChHhcC------------CHHHHHHHHHHHhCCCCeEEEEECh
Confidence 66655555799999999983 2456777777777777888777776
No 240
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.64 E-value=4.4e-07 Score=97.18 Aligned_cols=212 Identities=12% Similarity=0.116 Sum_probs=129.0
Q ss_pred hchhcccccccCCCCccCCcHHHHHHHHHHHH-----hcC-CCC-CeEecCCCCcHHHHHHHHHHHHHhCCCCccccCce
Q 007723 276 FCVDLTARASEELIDPVIGRETEIQRIIQILC-----RRT-KNN-PILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKR 348 (591)
Q Consensus 276 ~~~~l~~~~r~~~~~~vvG~~~~i~~l~~~L~-----~~~-~~~-ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~ 348 (591)
-...|+++|+|.+.+++.=+..-|..+.++|. .+. ++. +||+||+||||||.++.|++++. ..
T Consensus 68 ~~elW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg----------~~ 137 (634)
T KOG1970|consen 68 EFELWVEKYKPRTLEELAVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELG----------YQ 137 (634)
T ss_pred ccchhHHhcCcccHHHHhhhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhhC----------ce
Confidence 45678999999999999888888888888876 322 233 46889999999999999999872 22
Q ss_pred EEEee-h---------hh--hhccccccchHHHHHHHHHHHHHh------------cCCeEEEEcCcchhhcCCCCCCCC
Q 007723 349 IMSLD-M---------GL--LMAGAKERGELEARVTTLISEIQK------------SGDVILFIDEVHTLIGSGTVGRGN 404 (591)
Q Consensus 349 ~~~ld-~---------~~--l~~g~~~~g~~~~~i~~i~~~~~~------------~~~~ILfIDEi~~L~~~~~~~~~~ 404 (591)
+.+-. . .. ...+..+ ...-..++.+.....+ ..+.+|+|||+-..+...
T Consensus 138 ~~Ew~Npi~~~~~~~~h~~t~~~~~~~-~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d------ 210 (634)
T KOG1970|consen 138 LIEWSNPINLKEPENLHNETSFLMFPY-QSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRD------ 210 (634)
T ss_pred eeeecCCccccccccccccchhcccch-hhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhh------
Confidence 22111 0 00 0001111 1111122222222211 245689999998885442
Q ss_pred CCccHHHHHhhcccccCCcE--EEEec-----CChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHhhc
Q 007723 405 KGTGLDISNLLKPSLGRGEL--QCIAS-----TTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHH 477 (591)
Q Consensus 405 ~~~~~~~~n~L~~~le~g~v--~lI~a-----tt~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~ 477 (591)
....+++.|..+...+.+ ++|.| .+.+.|+. +..|-...-|...|.|.+....-..+.|..++.......
T Consensus 211 --~~~~f~evL~~y~s~g~~PlIf~iTd~~~~g~nnq~rl-f~~d~q~~~ri~~IsFNPIa~T~MKK~L~ric~~e~~~~ 287 (634)
T KOG1970|consen 211 --DSETFREVLRLYVSIGRCPLIFIITDSLSNGNNNQDRL-FPKDIQEEPRISNISFNPIAPTIMKKFLKRICRIEANKK 287 (634)
T ss_pred --hHHHHHHHHHHHHhcCCCcEEEEEeccccCCCcchhhh-chhhhhhccCcceEeecCCcHHHHHHHHHHHHHHhcccc
Confidence 134566677655555543 32222 22233332 333444555778899999998888888888877663322
Q ss_pred -CCCCc-HHHHHHHHHHhHHhhhcCCCcHHHHHHHHHH
Q 007723 478 -NCKFT-LEAINAAVHLSARYISDRYLPDKAIDLVDEA 513 (591)
Q Consensus 478 -~i~i~-~~al~~l~~~s~r~i~~~~lp~~ai~lld~a 513 (591)
++.+. ...++.++.-+.+.++. ||.-|.--
T Consensus 288 s~~k~~~~~~v~~i~~~s~GDIRs------AInsLQls 319 (634)
T KOG1970|consen 288 SGIKVPDTAEVELICQGSGGDIRS------AINSLQLS 319 (634)
T ss_pred cCCcCchhHHHHHHHHhcCccHHH------HHhHhhhh
Confidence 23333 44577888888888776 77777655
No 241
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.63 E-value=8.2e-08 Score=96.82 Aligned_cols=109 Identities=24% Similarity=0.320 Sum_probs=67.6
Q ss_pred CCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhcccc---ccchHHHHHHHHHHHHHhcCCeEE
Q 007723 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAK---ERGELEARVTTLISEIQKSGDVIL 386 (591)
Q Consensus 310 ~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~~---~~g~~~~~i~~i~~~~~~~~~~IL 386 (591)
...|++|+||||||||+||-+|++.+... +.+++.+...+++...+ ..|..+..+... +.+ --+|
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~-------g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~---l~~--~dlL 171 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKA-------GISVLFITAPDLLSKLKAAFDEGRLEEKLLRE---LKK--VDLL 171 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHc-------CCeEEEEEHHHHHHHHHHHHhcCchHHHHHHH---hhc--CCEE
Confidence 67899999999999999999999999632 67788888877763221 123333333332 222 3499
Q ss_pred EEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCCcEEEEecCCh--hHHHhhh
Q 007723 387 FIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQ--DEHRTQF 439 (591)
Q Consensus 387 fIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g~v~lI~att~--~e~~~~~ 439 (591)
||||+...... ......+..++....++... |.++|. .++...+
T Consensus 172 IiDDlG~~~~~-------~~~~~~~~q~I~~r~~~~~~--~~tsN~~~~~~~~~~ 217 (254)
T COG1484 172 IIDDIGYEPFS-------QEEADLLFQLISRRYESRSL--IITSNLSFGEWDELF 217 (254)
T ss_pred EEecccCccCC-------HHHHHHHHHHHHHHHhhccc--eeecCCChHHHHhhc
Confidence 99999887211 01123444455555555655 444443 3444433
No 242
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.62 E-value=2.3e-07 Score=94.51 Aligned_cols=148 Identities=17% Similarity=0.270 Sum_probs=87.1
Q ss_pred HHHHHHhcCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhccccccchHHHHHHHHHHHH---
Q 007723 302 IIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI--- 378 (591)
Q Consensus 302 l~~~L~~~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~--- 378 (591)
+++.+. ..+.+++|+||+|||||++++.+-+.+... ...+..+..+... ....+..+++..
T Consensus 25 ll~~l~-~~~~pvLl~G~~GtGKT~li~~~l~~l~~~-------~~~~~~~~~s~~T--------ts~~~q~~ie~~l~k 88 (272)
T PF12775_consen 25 LLDLLL-SNGRPVLLVGPSGTGKTSLIQNFLSSLDSD-------KYLVITINFSAQT--------TSNQLQKIIESKLEK 88 (272)
T ss_dssp HHHHHH-HCTEEEEEESSTTSSHHHHHHHHHHCSTTC-------CEEEEEEES-TTH--------HHHHHHHCCCTTECE
T ss_pred HHHHHH-HcCCcEEEECCCCCchhHHHHhhhccCCcc-------ccceeEeeccCCC--------CHHHHHHHHhhcEEc
Confidence 444444 346789999999999999999876544211 1122334433221 111122222111
Q ss_pred --------HhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCC--------------cEEEEecCChhHHH
Q 007723 379 --------QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG--------------ELQCIASTTQDEHR 436 (591)
Q Consensus 379 --------~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g--------------~v~lI~att~~e~~ 436 (591)
...++.|+||||++.-.... -+.....+.|+++++.+ ++.+|+++++..
T Consensus 89 ~~~~~~gP~~~k~lv~fiDDlN~p~~d~-------ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~-- 159 (272)
T PF12775_consen 89 RRGRVYGPPGGKKLVLFIDDLNMPQPDK-------YGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTG-- 159 (272)
T ss_dssp CTTEEEEEESSSEEEEEEETTT-S---T-------TS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTT--
T ss_pred CCCCCCCCCCCcEEEEEecccCCCCCCC-------CCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCC--
Confidence 01345799999998763221 12444567888877643 468889988753
Q ss_pred hhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHH
Q 007723 437 TQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYE 474 (591)
Q Consensus 437 ~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~ 474 (591)
....+++.|.|.|.++.+..|+.+.+..|...+...+.
T Consensus 160 Gr~~is~R~~r~f~i~~~~~p~~~sl~~If~~il~~~l 197 (272)
T PF12775_consen 160 GRNPISPRFLRHFNILNIPYPSDESLNTIFSSILQSHL 197 (272)
T ss_dssp T--SHHHHHHTTEEEEE----TCCHHHHHHHHHHHHHT
T ss_pred CCCCCChHHhhheEEEEecCCChHHHHHHHHHHHhhhc
Confidence 22346799999999999999999999999988877654
No 243
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.60 E-value=1.5e-06 Score=86.87 Aligned_cols=123 Identities=12% Similarity=0.088 Sum_probs=80.6
Q ss_pred CCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCcccc------------CceEEEeehhhhhccccccchHHHHHHHHHHH
Q 007723 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLL------------SKRIMSLDMGLLMAGAKERGELEARVTTLISE 377 (591)
Q Consensus 310 ~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~------------~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~ 377 (591)
..+..||+||.|+||..+|.++|+.+.+........ ...++.+... + ..-..+.++++.+.
T Consensus 6 ~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~----~---~~I~id~ir~l~~~ 78 (261)
T PRK05818 6 KTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQ----K---NPIKKEDALSIINK 78 (261)
T ss_pred CCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCC----c---ccCCHHHHHHHHHH
Confidence 345678999999999999999999987643111011 1112221110 0 01112334555544
Q ss_pred HH-----hcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccC--CcEEEEecCChhHHHhhhcccHHHHccCc
Q 007723 378 IQ-----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQCIASTTQDEHRTQFEKDKALARRFQ 450 (591)
Q Consensus 378 ~~-----~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~--g~v~lI~att~~e~~~~~~~d~aL~~Rf~ 450 (591)
+. ..+..|++||+++.| ...++|.|+..+|+ .+..+|..|+..+ .+-++++|||+
T Consensus 79 l~~~s~e~~~~KV~II~~ae~m-------------~~~AaNaLLK~LEEPp~~t~fiLit~~~~-----~lLpTI~SRCq 140 (261)
T PRK05818 79 LNRPSVESNGKKIYIIYGIEKL-------------NKQSANSLLKLIEEPPKNTYGIFTTRNEN-----NILNTILSRCV 140 (261)
T ss_pred HccCchhcCCCEEEEeccHhhh-------------CHHHHHHHHHhhcCCCCCeEEEEEECChH-----hCchHhhhhee
Confidence 32 135689999999999 77899999999985 3455666555432 46699999999
Q ss_pred ceeecCC
Q 007723 451 PVLISEP 457 (591)
Q Consensus 451 ~i~i~~p 457 (591)
.+.+..+
T Consensus 141 ~~~~~~~ 147 (261)
T PRK05818 141 QYVVLSK 147 (261)
T ss_pred eeecCCh
Confidence 8888777
No 244
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.60 E-value=4.5e-07 Score=93.35 Aligned_cols=146 Identities=14% Similarity=0.114 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHhcCCCCC-eEecCCCCcHHHHHHHHHHHHHhCCC---CccccCceEEEeehhhhhccccccchHHHHHH
Q 007723 297 TEIQRIIQILCRRTKNNP-ILLGESGVGKTAIAEGLAIRIVQAEV---PVFLLSKRIMSLDMGLLMAGAKERGELEARVT 372 (591)
Q Consensus 297 ~~i~~l~~~L~~~~~~~i-lL~GppGvGKT~la~~lA~~l~~~~~---p~~~~~~~~~~ld~~~l~~g~~~~g~~~~~i~ 372 (591)
..++.+...+...+.+|+ ||+|+.|+||+.++..+++.+.|... ........+..+|.. |.. . ..+.++
T Consensus 3 ~~~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~----g~~-i--~vd~Ir 75 (299)
T PRK07132 3 NWIKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF----DKD-L--SKSEFL 75 (299)
T ss_pred hHHHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC----CCc-C--CHHHHH
Confidence 356667777777666666 59999999999999999999865321 100001122333310 110 0 112355
Q ss_pred HHHHHHH-----hcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccC--CcEEEEecCChhHHHhhhcccHHH
Q 007723 373 TLISEIQ-----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQCIASTTQDEHRTQFEKDKAL 445 (591)
Q Consensus 373 ~i~~~~~-----~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~--g~v~lI~att~~e~~~~~~~d~aL 445 (591)
.+.+.+. ..+..|++||+++.+ +..++|.|+..|++ ..+.+|..|+.. ..+-+++
T Consensus 76 ~l~~~~~~~~~~~~~~KvvII~~~e~m-------------~~~a~NaLLK~LEEPp~~t~~il~~~~~-----~kll~TI 137 (299)
T PRK07132 76 SAINKLYFSSFVQSQKKILIIKNIEKT-------------SNSLLNALLKTIEEPPKDTYFLLTTKNI-----NKVLPTI 137 (299)
T ss_pred HHHHHhccCCcccCCceEEEEeccccc-------------CHHHHHHHHHHhhCCCCCeEEEEEeCCh-----HhChHHH
Confidence 5555542 136789999999999 67789999999984 345566555432 2355899
Q ss_pred HccCcceeecCCCHHHHHHHHH
Q 007723 446 ARRFQPVLISEPSQEDAVRILL 467 (591)
Q Consensus 446 ~~Rf~~i~i~~p~~~e~~~iL~ 467 (591)
++||+.+.+.+++.++....|.
T Consensus 138 ~SRc~~~~f~~l~~~~l~~~l~ 159 (299)
T PRK07132 138 VSRCQVFNVKEPDQQKILAKLL 159 (299)
T ss_pred HhCeEEEECCCCCHHHHHHHHH
Confidence 9999999999999999887774
No 245
>PF02861 Clp_N: Clp amino terminal domain; InterPro: IPR004176 This short domain is found in one or two copies at the amino terminus of ClpA and ClpB proteins from bacteria and eukaryotes. The function of these domains is uncertain but they may form a protein binding site []. The proteins are thought to be subunits of ATP-dependent proteases which act as chaperones to target the proteases to substrates.; GO: 0019538 protein metabolic process; PDB: 3FH2_A 3ZRJ_A 3ZRI_A 1QVR_C 3FES_C 2Y1R_F 3PXG_D 2Y1Q_A 3PXI_C 2K77_A ....
Probab=98.59 E-value=7.2e-08 Score=72.66 Aligned_cols=52 Identities=42% Similarity=0.677 Sum_probs=47.7
Q ss_pred HHHHHHHcCCCcCCHHHHHHHhhhcccchhhHHHHHhCCCHHHHHHHHHHHh
Q 007723 182 AVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRL 233 (591)
Q Consensus 182 A~~~A~~~g~~~I~~ehLLlall~~~~~~a~~iL~~~gv~~~~l~~~i~~~l 233 (591)
|..+|+++|+.+|+++|||+||+.++++.+.++|+++|+++..+++.+.+.+
T Consensus 1 A~~~A~~~~~~~i~~eHlL~all~~~~~~~~~il~~~~id~~~l~~~i~~~l 52 (53)
T PF02861_consen 1 AQELARERGHQYISPEHLLLALLEDPDSIAARILKKLGIDPEQLKAAIEKAL 52 (53)
T ss_dssp HHHHHHHTTBSSE-HHHHHHHHHHHTTSHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHcCCCcccHHHHHHHHHhhhhHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 6789999999999999999999999999999999999999999999887654
No 246
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.59 E-value=1.8e-07 Score=101.37 Aligned_cols=245 Identities=15% Similarity=0.203 Sum_probs=142.1
Q ss_pred CCCccCCcHHHHHHHHHHHHh------------cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEe---
Q 007723 288 LIDPVIGRETEIQRIIQILCR------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSL--- 352 (591)
Q Consensus 288 ~~~~vvG~~~~i~~l~~~L~~------------~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~l--- 352 (591)
-|..+.|++....-|.-.|.. +..-|++++|.||+||+.+.++.+..+.++ +|.-
T Consensus 343 l~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~----------vYtsGka 412 (764)
T KOG0480|consen 343 LFPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRS----------VYTSGKA 412 (764)
T ss_pred hCccccchHHHHhhHHHHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcc----------eEecCcc
Confidence 355688988666655554433 122589999999999999999988765321 2211
Q ss_pred -ehhhhh---ccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCC------
Q 007723 353 -DMGLLM---AGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG------ 422 (591)
Q Consensus 353 -d~~~l~---~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g------ 422 (591)
..+.|. ......|+|.-.. ..+.-++++|..|||+|.+ ...-+-+|...||..
T Consensus 413 SSaAGLTaaVvkD~esgdf~iEA----GALmLADnGICCIDEFDKM-------------d~~dqvAihEAMEQQtISIaK 475 (764)
T KOG0480|consen 413 SSAAGLTAAVVKDEESGDFTIEA----GALMLADNGICCIDEFDKM-------------DVKDQVAIHEAMEQQTISIAK 475 (764)
T ss_pred cccccceEEEEecCCCCceeeec----CcEEEccCceEEechhccc-------------ChHhHHHHHHHHHhheehhee
Confidence 001111 0111223221100 0111256889999999999 222234455555532
Q ss_pred ---------cEEEEecCChh--------HHHhhhcccHHHHccCcc--eeecCCCHHHHHHHHHHHHHHHHh---h--cC
Q 007723 423 ---------ELQCIASTTQD--------EHRTQFEKDKALARRFQP--VLISEPSQEDAVRILLGLREKYEA---H--HN 478 (591)
Q Consensus 423 ---------~v~lI~att~~--------e~~~~~~~d~aL~~Rf~~--i~i~~p~~~e~~~iL~~~~~~~~~---~--~~ 478 (591)
+.-+|+|+||- ..+..+.+++++.+||+. |.+..|++.....|-.++...-.. . ..
T Consensus 476 AGv~aTLnARtSIlAAANPv~GhYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~~~ 555 (764)
T KOG0480|consen 476 AGVVATLNARTSILAAANPVGGHYDRKKTLRENINMSAPIMSRFDLFFILLDDCNEVVDYAIARHILDLHRGIDDATERV 555 (764)
T ss_pred cceEEeecchhhhhhhcCCcCCccccccchhhhcCCCchhhhhhcEEEEEecCCchHHHHHHHHHHHHHhcccccccccc
Confidence 22467777764 233456778999999994 788999988888887777664211 0 11
Q ss_pred CCCcHHHHHHHHHHhHHhhhcCCCcHHHHHHHHHHhhHhhhhhh------ccchh-hhhhhhcCChHH-HHHHHHHHhhc
Q 007723 479 CKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELF------KRKKE-QQTCILSKPPDD-YWQEIRTVQAM 550 (591)
Q Consensus 479 i~i~~~al~~l~~~s~r~i~~~~lp~~ai~lld~a~a~~~~~~~------~~~~~-~~i~~l~~~~~~-~~~~~~~~~~~ 550 (591)
..++-+.+..-+.+++.+.+. +...|-..|-+-.-..+.+.. +++.. .+.+.|...-++ +..+..+.++.
T Consensus 556 ~~~~~e~vrkYi~yAR~~~P~--ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIRLsEA~Ar~~~~devt~ 633 (764)
T KOG0480|consen 556 CVYTLEQVRKYIRYARNFKPK--LSKEASEMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIRLSEARARVECRDEVTK 633 (764)
T ss_pred ccccHHHHHHHHHHHHhcCcc--ccHHHHHHHHHHHHHHHHhhccccCcccccccHHHHHHHHHHHHHHHhhhhhhhccH
Confidence 245566666666666643333 445555555544434444331 11221 344444444555 56666778999
Q ss_pred chHHHHhhchh
Q 007723 551 HEVVQGSRLKY 561 (591)
Q Consensus 551 ~d~~~a~~~~~ 561 (591)
+|.++|.++.+
T Consensus 634 ~~v~ea~eLlk 644 (764)
T KOG0480|consen 634 EDVEEAVELLK 644 (764)
T ss_pred HHHHHHHHHHH
Confidence 99999988754
No 247
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=1.9e-07 Score=106.77 Aligned_cols=120 Identities=25% Similarity=0.377 Sum_probs=90.2
Q ss_pred ccCCcHHHHHHHHHHHHhcC--------CCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhc---
Q 007723 291 PVIGRETEIQRIIQILCRRT--------KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA--- 359 (591)
Q Consensus 291 ~vvG~~~~i~~l~~~L~~~~--------~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~--- 359 (591)
.|+||++.+..+.+++.+.+ .-.++|.||.|||||-||++||..+.. ....++.+|++++..
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fg-------se~~~IriDmse~~evsk 635 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFG-------SEENFIRLDMSEFQEVSK 635 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcC-------CccceEEechhhhhhhhh
Confidence 48999999999999876632 123589999999999999999999843 257788999996321
Q ss_pred --c--ccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCCc------------
Q 007723 360 --G--AKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGE------------ 423 (591)
Q Consensus 360 --g--~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g~------------ 423 (591)
| ..|+|.-+ ...+.+.++..+..|++||||+.- ..+++|.|++++++|+
T Consensus 636 ligsp~gyvG~e~--gg~LteavrrrP~sVVLfdeIEkA-------------h~~v~n~llq~lD~GrltDs~Gr~Vd~k 700 (898)
T KOG1051|consen 636 LIGSPPGYVGKEE--GGQLTEAVKRRPYSVVLFEEIEKA-------------HPDVLNILLQLLDRGRLTDSHGREVDFK 700 (898)
T ss_pred ccCCCcccccchh--HHHHHHHHhcCCceEEEEechhhc-------------CHHHHHHHHHHHhcCccccCCCcEeecc
Confidence 2 23455322 335566667788999999999987 7889999999998763
Q ss_pred -EEEEecCCh
Q 007723 424 -LQCIASTTQ 432 (591)
Q Consensus 424 -v~lI~att~ 432 (591)
+++|.|.+.
T Consensus 701 N~I~IMTsn~ 710 (898)
T KOG1051|consen 701 NAIFIMTSNV 710 (898)
T ss_pred ceEEEEeccc
Confidence 467776554
No 248
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.59 E-value=6.3e-07 Score=91.29 Aligned_cols=180 Identities=13% Similarity=0.250 Sum_probs=118.7
Q ss_pred CCCCccCCcHHHHHHHHHHHHhc--CCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhh-------
Q 007723 287 ELIDPVIGRETEIQRIIQILCRR--TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLL------- 357 (591)
Q Consensus 287 ~~~~~vvG~~~~i~~l~~~L~~~--~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l------- 357 (591)
.-|+.+++....++.++....+- -..+++|.|+.||||-.+|++-+....++. .+|+.++++.+
T Consensus 201 ~~F~~~v~~S~~mk~~v~qA~k~AmlDAPLLI~GeTGTGKdLlAkaCH~~S~R~~-------~pFlalNCA~lPe~~aEs 273 (511)
T COG3283 201 SGFEQIVAVSPKMKHVVEQAQKLAMLDAPLLITGETGTGKDLLAKACHLASPRHS-------KPFLALNCASLPEDAAES 273 (511)
T ss_pred cchHHHhhccHHHHHHHHHHHHhhccCCCeEEecCCCchHHHHHHHHhhcCcccC-------CCeeEeecCCCchhHhHH
Confidence 46888999998888887765442 235678999999999999999887765554 44555555433
Q ss_pred -hccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCC-------------c
Q 007723 358 -MAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-------------E 423 (591)
Q Consensus 358 -~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g-------------~ 423 (591)
+.|... | .+.-+.+|+ .+.++.+|+|||..+ +..+|..|+.++..| +
T Consensus 274 ElFG~ap-g--~~gk~GffE---~AngGTVlLDeIgEm-------------Sp~lQaKLLRFL~DGtFRRVGee~Ev~vd 334 (511)
T COG3283 274 ELFGHAP-G--DEGKKGFFE---QANGGTVLLDEIGEM-------------SPRLQAKLLRFLNDGTFRRVGEDHEVHVD 334 (511)
T ss_pred HHhcCCC-C--CCCccchhh---hccCCeEEeehhhhc-------------CHHHHHHHHHHhcCCceeecCCcceEEEE
Confidence 223211 1 001223444 356789999999998 788899999988765 4
Q ss_pred EEEEecCChh--HHHhhhcccHHHHccCcceeecCCCHHHHHH----HHHHHHHHHHhhcCC---CCcHHHHHHHHHH
Q 007723 424 LQCIASTTQD--EHRTQFEKDKALARRFQPVLISEPSQEDAVR----ILLGLREKYEAHHNC---KFTLEAINAAVHL 492 (591)
Q Consensus 424 v~lI~att~~--e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~----iL~~~~~~~~~~~~i---~i~~~al~~l~~~ 492 (591)
+++|++|..+ ++-..-..-..|.-|+.++.+..|...++.. +.+.+..+...+.++ +++++.+.++.++
T Consensus 335 VRVIcatq~nL~~lv~~g~fReDLfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~y 412 (511)
T COG3283 335 VRVICATQVNLVELVQKGKFREDLFYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTRY 412 (511)
T ss_pred EEEEecccccHHHHHhcCchHHHHHHHhheeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHc
Confidence 6899988654 2222223346677789888888887644443 444444444444444 6788888877766
No 249
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.58 E-value=8e-08 Score=91.74 Aligned_cols=73 Identities=22% Similarity=0.386 Sum_probs=48.2
Q ss_pred cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhccc---cccchHHHHHHHHHHHHHhcCCeE
Q 007723 309 RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGA---KERGELEARVTTLISEIQKSGDVI 385 (591)
Q Consensus 309 ~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~---~~~g~~~~~i~~i~~~~~~~~~~I 385 (591)
....|++|+||+|||||+||.++++.+... +..+..++...++... ...+..+. ++..+.. ..+
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~-------g~~v~f~~~~~L~~~l~~~~~~~~~~~----~~~~l~~--~dl 111 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRK-------GYSVLFITASDLLDELKQSRSDGSYEE----LLKRLKR--VDL 111 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHT-------T--EEEEEHHHHHHHHHCCHCCTTHCH----HHHHHHT--SSC
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccC-------CcceeEeecCceeccccccccccchhh----hcCcccc--ccE
Confidence 456789999999999999999999988653 5667778877776322 12223333 3444433 349
Q ss_pred EEEcCcchh
Q 007723 386 LFIDEVHTL 394 (591)
Q Consensus 386 LfIDEi~~L 394 (591)
|+|||+...
T Consensus 112 LilDDlG~~ 120 (178)
T PF01695_consen 112 LILDDLGYE 120 (178)
T ss_dssp EEEETCTSS
T ss_pred eccccccee
Confidence 999999755
No 250
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.54 E-value=3.2e-07 Score=95.78 Aligned_cols=120 Identities=19% Similarity=0.268 Sum_probs=70.0
Q ss_pred CCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhccccc---cchHHHHHHHHHHHHHhcCCeEE
Q 007723 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKE---RGELEARVTTLISEIQKSGDVIL 386 (591)
Q Consensus 310 ~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~~~---~g~~~~~i~~i~~~~~~~~~~IL 386 (591)
...+++|+||+|||||+|+.++|+.+... +..++.++...++..... .... .....++.+... -+|
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l~~~-------g~~V~y~t~~~l~~~l~~~~~~~~~--~~~~~~~~l~~~--DLL 250 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKELLDR-------GKSVIYRTADELIEILREIRFNNDK--ELEEVYDLLINC--DLL 250 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHC-------CCeEEEEEHHHHHHHHHHHHhccch--hHHHHHHHhccC--CEE
Confidence 34889999999999999999999998643 567788887766532110 0000 011113333333 499
Q ss_pred EEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCCcEEEEecCC--hhHHHhhhcccHHHHccCc
Q 007723 387 FIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTT--QDEHRTQFEKDKALARRFQ 450 (591)
Q Consensus 387 fIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g~v~lI~att--~~e~~~~~~~d~aL~~Rf~ 450 (591)
+|||++....... ....+++++...+..+.- +|.+|| +.++.. ..++.+.+|+.
T Consensus 251 IIDDlG~e~~t~~-------~~~~Lf~iin~R~~~~k~-tIiTSNl~~~el~~--~~~eri~SRL~ 306 (329)
T PRK06835 251 IIDDLGTEKITEF-------SKSELFNLINKRLLRQKK-MIISTNLSLEELLK--TYSERISSRLL 306 (329)
T ss_pred EEeccCCCCCCHH-------HHHHHHHHHHHHHHCCCC-EEEECCCCHHHHHH--HHhHHHHHHHH
Confidence 9999988732211 123445555444444433 444454 444332 23567788764
No 251
>PRK09183 transposase/IS protein; Provisional
Probab=98.49 E-value=4.2e-07 Score=92.09 Aligned_cols=74 Identities=30% Similarity=0.376 Sum_probs=47.6
Q ss_pred cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhccc---cccchHHHHHHHHHHHHHhcCCeE
Q 007723 309 RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGA---KERGELEARVTTLISEIQKSGDVI 385 (591)
Q Consensus 309 ~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~---~~~g~~~~~i~~i~~~~~~~~~~I 385 (591)
....+++|+||||||||+|+.+++...... +..+..++...+.... ...+. +..++... .....+
T Consensus 100 ~~~~~v~l~Gp~GtGKThLa~al~~~a~~~-------G~~v~~~~~~~l~~~l~~a~~~~~----~~~~~~~~-~~~~dl 167 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHLAIALGYEAVRA-------GIKVRFTTAADLLLQLSTAQRQGR----YKTTLQRG-VMAPRL 167 (259)
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHHHHc-------CCeEEEEeHHHHHHHHHHHHHCCc----HHHHHHHH-hcCCCE
Confidence 346789999999999999999998876432 4566666655554221 11122 22333322 134569
Q ss_pred EEEcCcchh
Q 007723 386 LFIDEVHTL 394 (591)
Q Consensus 386 LfIDEi~~L 394 (591)
|+|||++.+
T Consensus 168 LiiDdlg~~ 176 (259)
T PRK09183 168 LIIDEIGYL 176 (259)
T ss_pred EEEcccccC
Confidence 999999876
No 252
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=8.9e-07 Score=94.18 Aligned_cols=138 Identities=20% Similarity=0.267 Sum_probs=86.6
Q ss_pred CCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCc
Q 007723 312 NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEV 391 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi 391 (591)
..+||.||||+|||+||-.+|... +.+++.+-...-+.|.+... --..++.+|+.+.+.+-.||+||+|
T Consensus 539 vSvLl~Gp~~sGKTaLAA~iA~~S----------~FPFvKiiSpe~miG~sEsa-Kc~~i~k~F~DAYkS~lsiivvDdi 607 (744)
T KOG0741|consen 539 VSVLLEGPPGSGKTALAAKIALSS----------DFPFVKIISPEDMIGLSESA-KCAHIKKIFEDAYKSPLSIIVVDDI 607 (744)
T ss_pred eEEEEecCCCCChHHHHHHHHhhc----------CCCeEEEeChHHccCccHHH-HHHHHHHHHHHhhcCcceEEEEcch
Confidence 457899999999999999999755 45566554444444543322 2235788999999999999999999
Q ss_pred chhhcCCCCCCCCCCccHHHHHhhccccc----CC-cEEEEecCChhHHHhhhcccHHHHccCc-ceeecCCCH-HHHHH
Q 007723 392 HTLIGSGTVGRGNKGTGLDISNLLKPSLG----RG-ELQCIASTTQDEHRTQFEKDKALARRFQ-PVLISEPSQ-EDAVR 464 (591)
Q Consensus 392 ~~L~~~~~~~~~~~~~~~~~~n~L~~~le----~g-~v~lI~att~~e~~~~~~~d~aL~~Rf~-~i~i~~p~~-~e~~~ 464 (591)
++|+.-...|. -.+.-+..+|+-++. .| ++.++++|..-++- .+-.+...|+ .+.++..+. ++..+
T Consensus 608 ErLiD~vpIGP---RfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL----~~m~i~~~F~~~i~Vpnl~~~~~~~~ 680 (744)
T KOG0741|consen 608 ERLLDYVPIGP---RFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVL----QEMGILDCFSSTIHVPNLTTGEQLLE 680 (744)
T ss_pred hhhhcccccCc---hhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHH----HHcCHHHhhhheeecCccCchHHHHH
Confidence 99987644411 112333344444443 23 45555555554321 2234566776 467766654 66666
Q ss_pred HHH
Q 007723 465 ILL 467 (591)
Q Consensus 465 iL~ 467 (591)
+|.
T Consensus 681 vl~ 683 (744)
T KOG0741|consen 681 VLE 683 (744)
T ss_pred HHH
Confidence 663
No 253
>PRK06921 hypothetical protein; Provisional
Probab=98.47 E-value=4.2e-07 Score=92.37 Aligned_cols=73 Identities=21% Similarity=0.348 Sum_probs=46.5
Q ss_pred CCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEc
Q 007723 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFID 389 (591)
Q Consensus 310 ~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfID 389 (591)
..++++|+|++|+|||+|+.++++.+.... +..++.+....++.... ..+ ......+..+. ...+|+||
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~------g~~v~y~~~~~l~~~l~--~~~-~~~~~~~~~~~--~~dlLiID 184 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKK------GVPVLYFPFVEGFGDLK--DDF-DLLEAKLNRMK--KVEVLFID 184 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhc------CceEEEEEHHHHHHHHH--HHH-HHHHHHHHHhc--CCCEEEEe
Confidence 467899999999999999999999985421 45666666655442111 111 11222333332 34599999
Q ss_pred Ccch
Q 007723 390 EVHT 393 (591)
Q Consensus 390 Ei~~ 393 (591)
|++.
T Consensus 185 Dl~~ 188 (266)
T PRK06921 185 DLFK 188 (266)
T ss_pred cccc
Confidence 9955
No 254
>PHA00729 NTP-binding motif containing protein
Probab=98.47 E-value=8.8e-07 Score=86.87 Aligned_cols=127 Identities=15% Similarity=0.168 Sum_probs=73.6
Q ss_pred HHHHHHHHhcCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCC------ccccCceEEEeehhhhhccccccchHHHHHHH
Q 007723 300 QRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVP------VFLLSKRIMSLDMGLLMAGAKERGELEARVTT 373 (591)
Q Consensus 300 ~~l~~~L~~~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p------~~~~~~~~~~ld~~~l~~g~~~~g~~~~~i~~ 373 (591)
+.+++.+......+++|+|+|||||||+|.+|++.+...-.+ ....+...+.++...+. ..++.
T Consensus 6 k~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~~~~~fid~~~Ll----------~~L~~ 75 (226)
T PHA00729 6 KKIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYVQNSYFFELPDAL----------EKIQD 75 (226)
T ss_pred HHHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcCCcEEEEEHHHHH----------HHHHH
Confidence 344455555555789999999999999999999987411000 00112223333433222 22332
Q ss_pred HHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCCcEEEEecCChhHHHhhhcccHHHHccCccee
Q 007723 374 LISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVL 453 (591)
Q Consensus 374 i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g~v~lI~att~~e~~~~~~~d~aL~~Rf~~i~ 453 (591)
.+... ....+|+|||+........+ ..+ .++ .++.+.+++++|+..+.
T Consensus 76 a~~~~--~~~dlLIIDd~G~~~~~~~w-------h~~--------------~~~---------~yf~L~~aLrSR~~l~i 123 (226)
T PHA00729 76 AIDND--YRIPLIIFDDAGIWLSKYVW-------YED--------------YMK---------TFYKIYALIRTRVSAVI 123 (226)
T ss_pred HHhcC--CCCCEEEEeCCchhhcccch-------hhh--------------ccc---------hHHHHHHHHHhhCcEEE
Confidence 22111 12358999998665321111 000 010 13456688888999999
Q ss_pred ecCCCHHHHHHHHHH
Q 007723 454 ISEPSQEDAVRILLG 468 (591)
Q Consensus 454 i~~p~~~e~~~iL~~ 468 (591)
+..++.+++...|+.
T Consensus 124 l~~ls~edL~~~Lr~ 138 (226)
T PHA00729 124 FTTPSPEDLAFYLRE 138 (226)
T ss_pred EecCCHHHHHHHHHh
Confidence 999999998888866
No 255
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.46 E-value=4.6e-06 Score=91.86 Aligned_cols=220 Identities=20% Similarity=0.228 Sum_probs=129.2
Q ss_pred hHHHhhchhcccccccCCCCccCCcHHHHHHHHHHHHh-----cCCCCCeEecCCCCcHHHHHHHHHHHHHh----CCCC
Q 007723 271 SALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCR-----RTKNNPILLGESGVGKTAIAEGLAIRIVQ----AEVP 341 (591)
Q Consensus 271 ~~l~~~~~~l~~~~r~~~~~~vvG~~~~i~~l~~~L~~-----~~~~~ilL~GppGvGKT~la~~lA~~l~~----~~~p 341 (591)
..|.++.-.|.-...|. .+-+|+.+...|...+.. .....+.+.|-||||||+.++.+...+.. +.+|
T Consensus 380 S~l~~ara~Lhls~vp~---sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p 456 (767)
T KOG1514|consen 380 SELSKARARLHLSAVPE---SLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELP 456 (767)
T ss_pred hHHHHHHHHhHHhhccc---cccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCC
Confidence 45666655555444443 467899988888776654 22346789999999999999999987753 3444
Q ss_pred ccccCceEEEeehhhhhc-------------cccccchHHHHHHHHHHHHH----hcCCeEEEEcCcchhhcCCCCCCCC
Q 007723 342 VFLLSKRIMSLDMGLLMA-------------GAKERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGN 404 (591)
Q Consensus 342 ~~~~~~~~~~ld~~~l~~-------------g~~~~g~~~~~i~~i~~~~~----~~~~~ILfIDEi~~L~~~~~~~~~~ 404 (591)
....+++|.-.+.. |.+ -.+...+..+-.... +....||+|||+|.|+...
T Consensus 457 ----~f~yveINgm~l~~~~~~Y~~I~~~lsg~~--~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~------ 524 (767)
T KOG1514|consen 457 ----KFDYVEINGLRLASPREIYEKIWEALSGER--VTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRS------ 524 (767)
T ss_pred ----CccEEEEcceeecCHHHHHHHHHHhcccCc--ccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhccc------
Confidence 33455555433221 111 111111111111111 2357899999999996431
Q ss_pred CCccHHHHHhhc-ccccCCcEEEEecCChhHHHhhhcccHHHHccCc--ceeecCCCHHHHHHHHHHHHHHHHhhcCCCC
Q 007723 405 KGTGLDISNLLK-PSLGRGELQCIASTTQDEHRTQFEKDKALARRFQ--PVLISEPSQEDAVRILLGLREKYEAHHNCKF 481 (591)
Q Consensus 405 ~~~~~~~~n~L~-~~le~g~v~lI~att~~e~~~~~~~d~aL~~Rf~--~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i 481 (591)
+.-+.|++. +.+...++++|+..|.-.+-.- .+.....+|+. .+.|.+++-+++.+|+...+... -.+
T Consensus 525 ---QdVlYn~fdWpt~~~sKLvvi~IaNTmdlPEr-~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~-----~~f 595 (767)
T KOG1514|consen 525 ---QDVLYNIFDWPTLKNSKLVVIAIANTMDLPER-LLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGL-----DAF 595 (767)
T ss_pred ---HHHHHHHhcCCcCCCCceEEEEecccccCHHH-HhccchhhhccceeeecCCCCHHHHHHHHHHhhcch-----hhc
Confidence 333455554 5556677777776654321110 12345556765 69999999999999987655433 234
Q ss_pred cHHHHHHHHHHhHHhhhcCCCcHHHHHHHHHHhhHh
Q 007723 482 TLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRA 517 (591)
Q Consensus 482 ~~~al~~l~~~s~r~i~~~~lp~~ai~lld~a~a~~ 517 (591)
.+++++.+++....--.+ ..+|+++++.|...+
T Consensus 596 ~~~aielvarkVAavSGD---aRraldic~RA~Eia 628 (767)
T KOG1514|consen 596 ENKAIELVARKVAAVSGD---ARRALDICRRAAEIA 628 (767)
T ss_pred chhHHHHHHHHHHhcccc---HHHHHHHHHHHHHHh
Confidence 556665555443222222 347788888876443
No 256
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.45 E-value=5.2e-06 Score=87.69 Aligned_cols=220 Identities=20% Similarity=0.164 Sum_probs=129.7
Q ss_pred chhcccccccCCCCccCCcHHHHHHHHHHHH----hcCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEe
Q 007723 277 CVDLTARASEELIDPVIGRETEIQRIIQILC----RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSL 352 (591)
Q Consensus 277 ~~~l~~~~r~~~~~~vvG~~~~i~~l~~~L~----~~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~l 352 (591)
...+...+.|+ .++||+.+...+..++. .....++.+.|-||+|||.+...+....... ......+++
T Consensus 140 ~~~l~~t~~p~---~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~-----~~~~~~v~i 211 (529)
T KOG2227|consen 140 SESLLNTAPPG---TLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKS-----SKSPVTVYI 211 (529)
T ss_pred HHHHHhcCCCC---CccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhh-----cccceeEEE
Confidence 34444455554 57999999988887754 3566889999999999999998777665332 112233455
Q ss_pred ehhhhhc--------------cccccchHHHHHHHHHH-HHHhc-CCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhh-
Q 007723 353 DMGLLMA--------------GAKERGELEARVTTLIS-EIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLL- 415 (591)
Q Consensus 353 d~~~l~~--------------g~~~~g~~~~~i~~i~~-~~~~~-~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L- 415 (591)
++.++.. +....|... .+...|. ...+. ...++++||+|.|...+. .+.-.|
T Consensus 212 nc~sl~~~~aiF~kI~~~~~q~~~s~~~~~-~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~----------~vLy~lF 280 (529)
T KOG2227|consen 212 NCTSLTEASAIFKKIFSSLLQDLVSPGTGM-QHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQ----------TVLYTLF 280 (529)
T ss_pred eeccccchHHHHHHHHHHHHHHhcCCchhH-HHHHHHHHHHhcccceEEEEechhhHHhhccc----------ceeeeeh
Confidence 5443210 000111111 1122222 22222 367999999999963321 111111
Q ss_pred -cccccCCcEEEEecCChhHHHhhhcccHHHHccCc----ceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHH
Q 007723 416 -KPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQ----PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAV 490 (591)
Q Consensus 416 -~~~le~g~v~lI~att~~e~~~~~~~d~aL~~Rf~----~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~ 490 (591)
.+.+-..++++||..|.-++. -..-+.|..|+. .+.|.+++.+++.+||....... .-..+-+.+++.++
T Consensus 281 ewp~lp~sr~iLiGiANslDlT--dR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~---~t~~~~~~Aie~~A 355 (529)
T KOG2227|consen 281 EWPKLPNSRIILIGIANSLDLT--DRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEE---STSIFLNAAIELCA 355 (529)
T ss_pred hcccCCcceeeeeeehhhhhHH--HHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcc---cccccchHHHHHHH
Confidence 233335567888877765432 223356666554 48999999999999998765543 23344455666666
Q ss_pred HHhHHhhhcCCCcHHHHHHHHHHhhHhhhhhhc
Q 007723 491 HLSARYISDRYLPDKAIDLVDEAGSRAHIELFK 523 (591)
Q Consensus 491 ~~s~r~i~~~~lp~~ai~lld~a~a~~~~~~~~ 523 (591)
+.....-.+ -++|++++..|+..+.+....
T Consensus 356 rKvaa~SGD---lRkaLdv~R~aiEI~E~e~r~ 385 (529)
T KOG2227|consen 356 RKVAAPSGD---LRKALDVCRRAIEIAEIEKRK 385 (529)
T ss_pred HHhccCchh---HHHHHHHHHHHHHHHHHHHhh
Confidence 554433333 457888888887766655443
No 257
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.42 E-value=3.9e-07 Score=86.83 Aligned_cols=48 Identities=38% Similarity=0.590 Sum_probs=33.7
Q ss_pred ccCCcHHHHHHHHHHHHh---cCCCCCeEecCCCCcHHHHHHHHHHHHHhC
Q 007723 291 PVIGRETEIQRIIQILCR---RTKNNPILLGESGVGKTAIAEGLAIRIVQA 338 (591)
Q Consensus 291 ~vvG~~~~i~~l~~~L~~---~~~~~ilL~GppGvGKT~la~~lA~~l~~~ 338 (591)
+++||+++++++...+.. ...++++|+|++|+|||++++.+...+...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 479999999999999842 345778999999999999999998887653
No 258
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=98.34 E-value=3.6e-06 Score=85.47 Aligned_cols=163 Identities=21% Similarity=0.294 Sum_probs=99.0
Q ss_pred ccCCcHHHHHHHHHHHHh----cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhh---------
Q 007723 291 PVIGRETEIQRIIQILCR----RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLL--------- 357 (591)
Q Consensus 291 ~vvG~~~~i~~l~~~L~~----~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l--------- 357 (591)
++.|..++-..+.+++.+ +..+.++++||.|+|||.++...-....+ . +..++.+.+...
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~-~------~E~~l~v~Lng~~~~dk~al~ 97 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQE-N------GENFLLVRLNGELQTDKIALK 97 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHh-c------CCeEEEEEECccchhhHHHHH
Confidence 577877776666666554 67799999999999999987765544211 1 222222222111
Q ss_pred ----------hccccccchHHHHHHHHHHHHHh-----cCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccc-cC
Q 007723 358 ----------MAGAKERGELEARVTTLISEIQK-----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL-GR 421 (591)
Q Consensus 358 ----------~~g~~~~g~~~~~i~~i~~~~~~-----~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~l-e~ 421 (591)
..+.+-.|.+.+.+..++..+++ ..++|.++||+|.+++-. .+.-+.|.+.-.- .+
T Consensus 98 ~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~--------rQtllYnlfDisqs~r 169 (408)
T KOG2228|consen 98 GITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHS--------RQTLLYNLFDISQSAR 169 (408)
T ss_pred HHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccch--------hhHHHHHHHHHHhhcC
Confidence 12233446666667777766654 234677778999885331 1233444443222 25
Q ss_pred CcEEEEecCChhHHHhhhcccHHHHccCcc--eeecCC-CHHHHHHHHHHHH
Q 007723 422 GELQCIASTTQDEHRTQFEKDKALARRFQP--VLISEP-SQEDAVRILLGLR 470 (591)
Q Consensus 422 g~v~lI~att~~e~~~~~~~d~aL~~Rf~~--i~i~~p-~~~e~~~iL~~~~ 470 (591)
..+.+||.|+.-+.-. .+...+.+||.. |.+.++ ..++...+++.+.
T Consensus 170 ~Piciig~Ttrld~lE--~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 170 APICIIGVTTRLDILE--LLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred CCeEEEEeeccccHHH--HHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 6788888888754322 244789999973 555544 5688888887765
No 259
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.33 E-value=2.5e-06 Score=87.39 Aligned_cols=174 Identities=16% Similarity=0.185 Sum_probs=91.2
Q ss_pred cHHHHHHHHHHHHh--cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhh------------cc
Q 007723 295 RETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM------------AG 360 (591)
Q Consensus 295 ~~~~i~~l~~~L~~--~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~------------~g 360 (591)
|+.++++|.+.|.. ....-+.|+|++|+|||+||..+++...... .+ + .+++++++.-. .+
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~---~f-~-~v~wv~~~~~~~~~~~~~~i~~~l~ 75 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKN---RF-D-GVIWVSLSKNPSLEQLLEQILRQLG 75 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCC---CC-T-EEEEEEEES-SCCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccccccc---cc-c-ccccccccccccccccccccccccc
Confidence 67899999999988 4455678999999999999999998743111 11 1 23334333110 01
Q ss_pred cc-----ccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhccccc--CCcEEEEecCChh
Q 007723 361 AK-----ERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG--RGELQCIASTTQD 433 (591)
Q Consensus 361 ~~-----~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le--~g~v~lI~att~~ 433 (591)
.. ...+.+.....+.+ .....+.+|++|+++... ..+.+...+. .....+|.||...
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~-~L~~~~~LlVlDdv~~~~---------------~~~~l~~~~~~~~~~~kilvTTR~~ 139 (287)
T PF00931_consen 76 EPDSSISDPKDIEELQDQLRE-LLKDKRCLLVLDDVWDEE---------------DLEELREPLPSFSSGSKILVTTRDR 139 (287)
T ss_dssp CC-STSSCCSSHHHHHHHHHH-HHCCTSEEEEEEEE-SHH---------------HH-------HCHHSS-EEEEEESCG
T ss_pred ccccccccccccccccccchh-hhccccceeeeeeecccc---------------ccccccccccccccccccccccccc
Confidence 11 12234443344333 334568999999998761 1222222221 2234555555443
Q ss_pred HHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHh
Q 007723 434 EHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (591)
Q Consensus 434 e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~ 496 (591)
. .. ..+......+.+...+.++..+++......-.. ....-.++..+.+++.+.+.
T Consensus 140 ~---v~---~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~-~~~~~~~~~~~~i~~~c~gl 195 (287)
T PF00931_consen 140 S---VA---GSLGGTDKVIELEPLSEEEALELFKKRAGRKES-ESPEDLEDLAKEIVEKCGGL 195 (287)
T ss_dssp G---GG---TTHHSCEEEEECSS--HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-
T ss_pred c---cc---ccccccccccccccccccccccccccccccccc-cccccccccccccccccccc
Confidence 2 11 122222456999999999999998776443210 01122234556677766543
No 260
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.33 E-value=8.9e-07 Score=91.69 Aligned_cols=72 Identities=19% Similarity=0.318 Sum_probs=48.1
Q ss_pred CCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhcccc---ccchHHHHHHHHHHHHHhcCCeEE
Q 007723 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAK---ERGELEARVTTLISEIQKSGDVIL 386 (591)
Q Consensus 310 ~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~~---~~g~~~~~i~~i~~~~~~~~~~IL 386 (591)
...+++|+||+|||||+|+.++++.+... +..+..+.+..++...+ ..+. +...++.+. ...+|
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~-------g~~v~~~~~~~l~~~lk~~~~~~~----~~~~l~~l~--~~dlL 221 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKK-------GVSSTLLHFPEFIRELKNSISDGS----VKEKIDAVK--EAPVL 221 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc-------CCCEEEEEHHHHHHHHHHHHhcCc----HHHHHHHhc--CCCEE
Confidence 45689999999999999999999999653 45555666665542211 1122 233444443 34499
Q ss_pred EEcCcchh
Q 007723 387 FIDEVHTL 394 (591)
Q Consensus 387 fIDEi~~L 394 (591)
+|||+...
T Consensus 222 iIDDiG~e 229 (306)
T PRK08939 222 MLDDIGAE 229 (306)
T ss_pred EEecCCCc
Confidence 99999765
No 261
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=98.33 E-value=1.6e-06 Score=91.78 Aligned_cols=240 Identities=14% Similarity=0.162 Sum_probs=139.0
Q ss_pred CccCCcHHHHHHHHHHHHhc------------CCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhh
Q 007723 290 DPVIGRETEIQRIIQILCRR------------TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLL 357 (591)
Q Consensus 290 ~~vvG~~~~i~~l~~~L~~~------------~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l 357 (591)
.++.|+++..+.|.-.|-.. ..-|++|.|.||+-|+.|...+.+...++. |.--
T Consensus 342 PEIyGheDVKKaLLLlLVGgvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgv----------YTTG---- 407 (721)
T KOG0482|consen 342 PEIYGHEDVKKALLLLLVGGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGV----------YTTG---- 407 (721)
T ss_pred hhhccchHHHHHHHHHhhCCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccc----------eecC----
Confidence 36899999998888776532 124789999999999999999887653321 1100
Q ss_pred hccccccchHHHHHHHH------HHH--HHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhccccc---------
Q 007723 358 MAGAKERGELEARVTTL------ISE--IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG--------- 420 (591)
Q Consensus 358 ~~g~~~~g~~~~~i~~i------~~~--~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le--------- 420 (591)
-|.+..|-...-+++- ++. +--++++|..|||+|.+.....+ ++-.+|+
T Consensus 408 -rGSSGVGLTAAVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~DRt-------------AIHEVMEQQTISIaKA 473 (721)
T KOG0482|consen 408 -RGSSGVGLTAAVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDESDRT-------------AIHEVMEQQTISIAKA 473 (721)
T ss_pred -CCCCccccchhhhcCCCCCeeEeccceEEEccCceEeehhhhhhhhhhhH-------------HHHHHHHhhhhhhhhh
Confidence 0111111111111110 000 00146789999999999544221 1111121
Q ss_pred ------CCcEEEEecCChhHHH---------hhhcccHHHHccCcc--eeecCCCHHHHHHHHHHHHHHHH--hhcCC--
Q 007723 421 ------RGELQCIASTTQDEHR---------TQFEKDKALARRFQP--VLISEPSQEDAVRILLGLREKYE--AHHNC-- 479 (591)
Q Consensus 421 ------~g~v~lI~att~~e~~---------~~~~~d~aL~~Rf~~--i~i~~p~~~e~~~iL~~~~~~~~--~~~~i-- 479 (591)
+.+.-+++|.||. |. ..+.+..+|++||+. +....|+.+....+.+++..--. ++...
T Consensus 474 GI~TtLNAR~sILaAANPa-yGRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~f 552 (721)
T KOG0482|consen 474 GINTTLNARTSILAAANPA-YGRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDF 552 (721)
T ss_pred ccccchhhhHHhhhhcCcc-ccccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccC
Confidence 1234566666653 21 345678999999995 56788888776666665533211 11111
Q ss_pred -CCcHHHHHHHHHHhHHhhhcCCCcHHHHHHHHHHhhHhhhhhhccchh-----hhhhhhcCChHH-HHHHHHHHhhcch
Q 007723 480 -KFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKE-----QQTCILSKPPDD-YWQEIRTVQAMHE 552 (591)
Q Consensus 480 -~i~~~al~~l~~~s~r~i~~~~lp~~ai~lld~a~a~~~~~~~~~~~~-----~~i~~l~~~~~~-~~~~~~~~~~~~d 552 (591)
.++.+.+...+.+++++-+. +|...-+.+-.|....+-........ ...=.+...-.+ ..+...+.|..+|
T Consensus 553 epl~~~~mR~yI~~ak~~~P~--vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRls~~V~~~D 630 (721)
T KOG0482|consen 553 EPLDPNLMRRYISLAKRKNPV--VPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTALARLRLSDSVEEDD 630 (721)
T ss_pred CCCCHHHHHHHHHHHhhcCCC--CCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhhhccccchhh
Confidence 37889999999999988665 77777777777765444333211110 111111111122 5566667889999
Q ss_pred HHHHhhch
Q 007723 553 VVQGSRLK 560 (591)
Q Consensus 553 ~~~a~~~~ 560 (591)
+++|.++-
T Consensus 631 V~EALRLm 638 (721)
T KOG0482|consen 631 VNEALRLM 638 (721)
T ss_pred HHHHHHHH
Confidence 99999874
No 262
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=98.31 E-value=4.2e-06 Score=80.78 Aligned_cols=116 Identities=19% Similarity=0.273 Sum_probs=76.7
Q ss_pred HHHHHHHHhcCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhccccccc----hHH-------
Q 007723 300 QRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERG----ELE------- 368 (591)
Q Consensus 300 ~~l~~~L~~~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~~~~g----~~~------- 368 (591)
+-++..|......|.|++|||||||||+.+-||+.+..+.. .+...++.-+|-.+-++|. ..| ++.
T Consensus 126 ~~li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~--~~l~kkv~IiDersEIag~-~~gvpq~~~g~R~dVld 202 (308)
T COG3854 126 NPLIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGIN--QFLPKKVGIIDERSEIAGC-LNGVPQHGRGRRMDVLD 202 (308)
T ss_pred hHHHHHHHhcCceeeEEecCCCCChHHHHHHHHHHhhcccc--ccCCceEEEEeccchhhcc-ccCCchhhhhhhhhhcc
Confidence 34667777778889999999999999999999999866532 3336777778877666552 111 111
Q ss_pred --HHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCCcEEEEecCChhH
Q 007723 369 --ARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDE 434 (591)
Q Consensus 369 --~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g~v~lI~att~~e 434 (591)
-....++..++...+-|+++|||.+.. + ..+++..++. .+.+|++..-..
T Consensus 203 ~cpk~~gmmmaIrsm~PEViIvDEIGt~~--------------d-~~A~~ta~~~-GVkli~TaHG~~ 254 (308)
T COG3854 203 PCPKAEGMMMAIRSMSPEVIIVDEIGTEE--------------D-ALAILTALHA-GVKLITTAHGNG 254 (308)
T ss_pred cchHHHHHHHHHHhcCCcEEEEeccccHH--------------H-HHHHHHHHhc-CcEEEEeecccc
Confidence 122335555666678899999998761 2 2233344444 478888776544
No 263
>PF05729 NACHT: NACHT domain
Probab=98.24 E-value=1.6e-05 Score=73.98 Aligned_cols=145 Identities=17% Similarity=0.198 Sum_probs=76.4
Q ss_pred CeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhccccccchHHHH-----------HHHHH-HHHHhc
Q 007723 314 PILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEAR-----------VTTLI-SEIQKS 381 (591)
Q Consensus 314 ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~~~~g~~~~~-----------i~~i~-~~~~~~ 381 (591)
++|+|+||+|||++++.++..+.....+... ..-++.+.+......... ..+... +...+ ......
T Consensus 3 l~I~G~~G~GKStll~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQLAEEEPPPSK-FPYPFFFSLRDISDSNNS-RSLADLLFDQLPESIAPIEELLQELLEKN 80 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHHHhcCccccc-ceEEEEEeehhhhhcccc-chHHHHHHHhhccchhhhHHHHHHHHHcC
Confidence 6799999999999999999998765432211 112223333322211000 011111 11111 122346
Q ss_pred CCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccC---CcEEEEecCChhHHHhhhcccHHHHccCcceeecCCC
Q 007723 382 GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR---GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPS 458 (591)
Q Consensus 382 ~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~---g~v~lI~att~~e~~~~~~~d~aL~~Rf~~i~i~~p~ 458 (591)
+..+|+||.+|.+...... .......+.|...+.. .++.+|.++++..+.. ..........+.+.+.+
T Consensus 81 ~~~llilDglDE~~~~~~~-----~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~----~~~~~~~~~~~~l~~~~ 151 (166)
T PF05729_consen 81 KRVLLILDGLDELEEQDQS-----QERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPD----LRRRLKQAQILELEPFS 151 (166)
T ss_pred CceEEEEechHhcccchhh-----hHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHH----HHHhcCCCcEEEECCCC
Confidence 7889999999999543211 0011233334333332 3466666666654221 11222223458999999
Q ss_pred HHHHHHHHHHH
Q 007723 459 QEDAVRILLGL 469 (591)
Q Consensus 459 ~~e~~~iL~~~ 469 (591)
.++..++++..
T Consensus 152 ~~~~~~~~~~~ 162 (166)
T PF05729_consen 152 EEDIKQYLRKY 162 (166)
T ss_pred HHHHHHHHHHH
Confidence 99988888654
No 264
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=98.22 E-value=1.4e-05 Score=87.63 Aligned_cols=51 Identities=27% Similarity=0.396 Sum_probs=42.5
Q ss_pred CCCCccCCcHHHHHHHHHHHHh------cCCCCCeEecCCCCcHHHHHHHHHHHHHh
Q 007723 287 ELIDPVIGRETEIQRIIQILCR------RTKNNPILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 287 ~~~~~vvG~~~~i~~l~~~L~~------~~~~~ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
..|++++|.++.++++++.|.. ..+.-++|+||||+|||+|++.|++.+..
T Consensus 73 ~fF~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 73 PAFEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred cchhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 4788999999999999998732 23355679999999999999999998744
No 265
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=98.11 E-value=4e-05 Score=75.32 Aligned_cols=149 Identities=11% Similarity=0.049 Sum_probs=97.6
Q ss_pred HHHHHHHHHhcCCC-CCeEecCCC-CcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhccccccchHHHHHHHHHH
Q 007723 299 IQRIIQILCRRTKN-NPILLGESG-VGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLIS 376 (591)
Q Consensus 299 i~~l~~~L~~~~~~-~ilL~GppG-vGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~ 376 (591)
+..+...+...+.. ..||.|..+ +||..++.-+++.+.+.+++.. ....++.+....- .+.....-..+.++.+.+
T Consensus 2 ~~~L~~~iq~~kLshAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~-~HPD~~~I~pe~~-~~~~~~~I~IdqIReL~~ 79 (263)
T PRK06581 2 IERLEFNLKHNKLYNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLE-NNPDYHFIARETS-ATSNAKNISIEQIRKLQD 79 (263)
T ss_pred hHHHHHHHHcCcchheeeEeCCChhhHHHHHHHHHHHHHhccCcccC-CCCCEEEEecccc-ccccCCcccHHHHHHHHH
Confidence 34666677766654 457889998 9999999999998876543321 1233444432110 000001112344566665
Q ss_pred HHH----hcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCC--cEEEEecCChhHHHhhhcccHHHHccCc
Q 007723 377 EIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG--ELQCIASTTQDEHRTQFEKDKALARRFQ 450 (591)
Q Consensus 377 ~~~----~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g--~v~lI~att~~e~~~~~~~d~aL~~Rf~ 450 (591)
.+. .++..|++|++++.| ...++|.|+..+|++ ...+|..|+..+ .+.++++|||+
T Consensus 80 ~l~~~p~~g~~KViII~~ae~m-------------t~~AANALLKtLEEPP~~t~fILit~~~~-----~LLpTIrSRCq 141 (263)
T PRK06581 80 FLSKTSAISGYKVAIIYSAELM-------------NLNAANSCLKILEDAPKNSYIFLITSRAA-----SIISTIRSRCF 141 (263)
T ss_pred HHhhCcccCCcEEEEEechHHh-------------CHHHHHHHHHhhcCCCCCeEEEEEeCChh-----hCchhHhhceE
Confidence 554 256789999999999 788999999999853 455555444422 46699999999
Q ss_pred ceeecCCCHHHHHHHHH
Q 007723 451 PVLISEPSQEDAVRILL 467 (591)
Q Consensus 451 ~i~i~~p~~~e~~~iL~ 467 (591)
.+.+..|......+...
T Consensus 142 ~i~~~~p~~~~~~e~~~ 158 (263)
T PRK06581 142 KINVRSSILHAYNELYS 158 (263)
T ss_pred EEeCCCCCHHHHHHHHH
Confidence 99999998866655553
No 266
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=98.10 E-value=1.3e-05 Score=86.97 Aligned_cols=190 Identities=13% Similarity=0.173 Sum_probs=96.5
Q ss_pred ccCCcHHHHHHHHHHHHhc------------CCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhh
Q 007723 291 PVIGRETEIQRIIQILCRR------------TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM 358 (591)
Q Consensus 291 ~vvG~~~~i~~l~~~L~~~------------~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~ 358 (591)
.++|+......+.-.|..+ .--|+||+|.|||||+.+.+.+++... ..++..-.++--
T Consensus 450 sIyGh~~VK~AvAlaLfGGv~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~----------RAV~tTGqGASa 519 (854)
T KOG0477|consen 450 SIYGHEDVKRAVALALFGGVPKNPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSP----------RAVFTTGQGASA 519 (854)
T ss_pred hhhchHHHHHHHHHHHhcCCccCCCCCceeccceeEEEecCCCccHHHHHHHHHhcCc----------ceeEeccCCccc
Confidence 4677776666665555442 124799999999999999999887542 222211111100
Q ss_pred cc-------ccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHh------hcccccCCcEE
Q 007723 359 AG-------AKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNL------LKPSLGRGELQ 425 (591)
Q Consensus 359 ~g-------~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~------L~~~le~g~v~ 425 (591)
+| .+-.++|.-.-.. +--++++|.+|||+|.+.....+.- -..++.|.+ +...| .+...
T Consensus 520 vGLTa~v~KdPvtrEWTLEaGA----LVLADkGvClIDEFDKMndqDRtSI---HEAMEQQSISISKAGIVtsL-qArct 591 (854)
T KOG0477|consen 520 VGLTAYVRKDPVTREWTLEAGA----LVLADKGVCLIDEFDKMNDQDRTSI---HEAMEQQSISISKAGIVTSL-QARCT 591 (854)
T ss_pred cceeEEEeeCCccceeeeccCe----EEEccCceEEeehhhhhcccccchH---HHHHHhcchhhhhhhHHHHH-Hhhhh
Confidence 01 0111222110000 0014678999999999965433200 001111110 00011 24567
Q ss_pred EEecCCh--------hHHHhhhcccHHHHccCcceee--cCCCHHHHHHHHHHHHHHHHhhcCCC---------------
Q 007723 426 CIASTTQ--------DEHRTQFEKDKALARRFQPVLI--SEPSQEDAVRILLGLREKYEAHHNCK--------------- 480 (591)
Q Consensus 426 lI~att~--------~e~~~~~~~d~aL~~Rf~~i~i--~~p~~~e~~~iL~~~~~~~~~~~~i~--------------- 480 (591)
+|+|.|| -.+.+...+..++.+||+++-+ ...+..+.....+.....+..+|.-.
T Consensus 592 vIAAanPigGRY~~s~tFaqNV~ltePIlSRFDiLcVvkD~vd~~~De~lA~fVV~Sh~r~hp~~~~~~~~~e~~~~~~v 671 (854)
T KOG0477|consen 592 VIAAANPIGGRYNPSLTFAQNVDLTEPILSRFDILCVVKDTVDPVQDEKLAKFVVGSHVRHHPSNKEEDGLEEPQMPARV 671 (854)
T ss_pred hheecCCCCCccCCccchhhccccccchhhhcceeeeeecccCchhHHHHHHHHHHhHhhcCCcccccCccccccccccc
Confidence 8888888 3344455677899999995322 22232222222233333333333222
Q ss_pred --CcHHHHHHHHHHhHHhhh
Q 007723 481 --FTLEAINAAVHLSARYIS 498 (591)
Q Consensus 481 --i~~~al~~l~~~s~r~i~ 498 (591)
+..+++..-+.+++.++.
T Consensus 672 ~~ipq~lLrkyI~yar~~v~ 691 (854)
T KOG0477|consen 672 EPIPQELLRKYIIYAREKVR 691 (854)
T ss_pred ccChHHHHHHHHHHHHHhcc
Confidence 566777777767665543
No 267
>PF14516 AAA_35: AAA-like domain
Probab=98.06 E-value=8.9e-05 Score=77.94 Aligned_cols=180 Identities=18% Similarity=0.254 Sum_probs=108.2
Q ss_pred cCCcHHHHHHHHHHHHhcCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhccc-ccc------
Q 007723 292 VIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGA-KER------ 364 (591)
Q Consensus 292 vvG~~~~i~~l~~~L~~~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~-~~~------ 364 (591)
.|.|...-+.+.+.+..+ +..+.+.||..+|||++...+.+.+... +..++.+|+..+.... ...
T Consensus 13 Yi~R~~~e~~~~~~i~~~-G~~~~I~apRq~GKTSll~~l~~~l~~~-------~~~~v~id~~~~~~~~~~~~~~f~~~ 84 (331)
T PF14516_consen 13 YIERPPAEQECYQEIVQP-GSYIRIKAPRQMGKTSLLLRLLERLQQQ-------GYRCVYIDLQQLGSAIFSDLEQFLRW 84 (331)
T ss_pred ccCchHHHHHHHHHHhcC-CCEEEEECcccCCHHHHHHHHHHHHHHC-------CCEEEEEEeecCCCcccCCHHHHHHH
Confidence 567776777777766543 5578899999999999999999888543 4555566655432100 000
Q ss_pred ----------------chHH------HHHHHHHHHH--Hh-cCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccc
Q 007723 365 ----------------GELE------ARVTTLISEI--QK-SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL 419 (591)
Q Consensus 365 ----------------g~~~------~~i~~i~~~~--~~-~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~l 419 (591)
..|. ..+...+++. .. ..+.||+|||||.+++.... ..+....|+...
T Consensus 85 ~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~-------~~dF~~~LR~~~ 157 (331)
T PF14516_consen 85 FCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQI-------ADDFFGLLRSWY 157 (331)
T ss_pred HHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcch-------HHHHHHHHHHHH
Confidence 0000 1122233331 11 46899999999999653222 456777777665
Q ss_pred cCC-------cEEEEecCChhHHHhhhcc-cHHHHccCcceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHH
Q 007723 420 GRG-------ELQCIASTTQDEHRTQFEK-DKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVH 491 (591)
Q Consensus 420 e~g-------~v~lI~att~~e~~~~~~~-d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~ 491 (591)
++. .+++|++...+.|.. ... ..++ +-...|.++..+.+++..++ .++ +..+++..++.+..
T Consensus 158 ~~~~~~~~~~~L~li~~~~t~~~~~-~~~~~SPF-NIg~~i~L~~Ft~~ev~~L~----~~~----~~~~~~~~~~~l~~ 227 (331)
T PF14516_consen 158 EQRKNNPIWQKLRLILAGSTEDYII-LDINQSPF-NIGQPIELPDFTPEEVQELA----QRY----GLEFSQEQLEQLMD 227 (331)
T ss_pred HhcccCcccceEEEEEecCcccccc-cCCCCCCc-ccccceeCCCCCHHHHHHHH----Hhh----hccCCHHHHHHHHH
Confidence 532 355555554333321 111 1122 22335888888888876665 333 66788888999988
Q ss_pred HhHHh
Q 007723 492 LSARY 496 (591)
Q Consensus 492 ~s~r~ 496 (591)
++.++
T Consensus 228 ~tgGh 232 (331)
T PF14516_consen 228 WTGGH 232 (331)
T ss_pred HHCCC
Confidence 88664
No 268
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.02 E-value=5.3e-05 Score=69.60 Aligned_cols=27 Identities=26% Similarity=0.434 Sum_probs=23.7
Q ss_pred CCCeEecCCCCcHHHHHHHHHHHHHhC
Q 007723 312 NNPILLGESGVGKTAIAEGLAIRIVQA 338 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~l~~~ 338 (591)
-.+.++|+||+||||++..++..+.+.
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~ 32 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREK 32 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhc
Confidence 357899999999999999999988654
No 269
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=98.00 E-value=3.9e-05 Score=81.48 Aligned_cols=84 Identities=25% Similarity=0.284 Sum_probs=52.3
Q ss_pred cCCCCCeEecCCCCcHHHHHHHHHHH-HHhCCCCccccCceEEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEE
Q 007723 309 RTKNNPILLGESGVGKTAIAEGLAIR-IVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILF 387 (591)
Q Consensus 309 ~~~~~ilL~GppGvGKT~la~~lA~~-l~~~~~p~~~~~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILf 387 (591)
.+..|++++||+|||||+++.++... .... + ....++.++.. . -...+..+ ....+|+
T Consensus 207 e~~~Nli~lGp~GTGKThla~~l~~~~a~~s-------G---~f~T~a~Lf~~------L---~~~~lg~v--~~~DlLI 265 (449)
T TIGR02688 207 EPNYNLIELGPKGTGKSYIYNNLSPYVILIS-------G---GTITVAKLFYN------I---STRQIGLV--GRWDVVA 265 (449)
T ss_pred hcCCcEEEECCCCCCHHHHHHHHhHHHHHHc-------C---CcCcHHHHHHH------H---HHHHHhhh--ccCCEEE
Confidence 35689999999999999999999887 2211 1 11123333211 1 11222222 2345999
Q ss_pred EcCcchhhcCCCCCCCCCCccHHHHHhhcccccCC
Q 007723 388 IDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG 422 (591)
Q Consensus 388 IDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g 422 (591)
|||+..+.- ....+..+.|+..|+.|
T Consensus 266 ~DEvgylp~---------~~~~~~v~imK~yMesg 291 (449)
T TIGR02688 266 FDEVATLKF---------AKPKELIGILKNYMESG 291 (449)
T ss_pred EEcCCCCcC---------CchHHHHHHHHHHHHhC
Confidence 999999731 22556788999888754
No 270
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=97.98 E-value=0.0001 Score=70.49 Aligned_cols=123 Identities=15% Similarity=0.117 Sum_probs=91.6
Q ss_pred HHHHHHHHHhc-CCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccC--CcEEEEecCChhHHHhhhcccHHHHc
Q 007723 371 VTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQCIASTTQDEHRTQFEKDKALAR 447 (591)
Q Consensus 371 i~~i~~~~~~~-~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~--g~v~lI~att~~e~~~~~~~d~aL~~ 447 (591)
++.+++.+... ....++|+++|.+ +..++|+|+..+|+ .++.+|..|+... .+.++++|
T Consensus 42 iReii~~~~~~~~~~k~iI~~a~~l-------------~~~A~NaLLK~LEEPp~~~~fiL~t~~~~-----~llpTI~S 103 (206)
T PRK08485 42 AKEVIAEAYIAESEEKIIVIAAPSY-------------GIEAQNALLKILEEPPKNICFIIVAKSKN-----LLLPTIRS 103 (206)
T ss_pred HHHHHHHHhhCCCCcEEEEEchHhh-------------CHHHHHHHHHHhcCCCCCeEEEEEeCChH-----hCchHHHh
Confidence 56666665432 2334568899999 78899999999985 3455555555432 46699999
Q ss_pred cCcc-------------eeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhhhcC-CCcHHHHHHHHHH
Q 007723 448 RFQP-------------VLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDR-YLPDKAIDLVDEA 513 (591)
Q Consensus 448 Rf~~-------------i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i~~~-~lp~~ai~lld~a 513 (591)
||+. +.+...+.+++.+.|.. ..+ .++...+++++.++.++.+.+++. .+.+++++..+.|
T Consensus 104 Rc~~~~~~~~~~~~~l~l~l~~l~~~~i~~~L~~-~~k----e~~~~~~ea~~lIa~la~~s~r~~l~l~~q~l~~f~~a 178 (206)
T PRK08485 104 RLIIEKRKQKKPVKPLDLDLKKLDLKDIYEFLKE-LEK----ENKLSKEELKELIESLLKECVKYKIPLNEEELEYFDKA 178 (206)
T ss_pred hheeccccccccccccccccCCCCHHHHHHHHHH-HHH----cccccHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHHH
Confidence 9985 67888899999888876 222 367778899999999999998876 5788888888888
Q ss_pred hhH
Q 007723 514 GSR 516 (591)
Q Consensus 514 ~a~ 516 (591)
...
T Consensus 179 ~~l 181 (206)
T PRK08485 179 IKL 181 (206)
T ss_pred HHH
Confidence 743
No 271
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.95 E-value=7.4e-06 Score=94.66 Aligned_cols=203 Identities=16% Similarity=0.195 Sum_probs=129.1
Q ss_pred chhcccccccCCCCccCCcHHHHHHHHHHHHhcC---------------CC-CCeEecCCCCcHHHHHHHHHHHHHhCCC
Q 007723 277 CVDLTARASEELIDPVIGRETEIQRIIQILCRRT---------------KN-NPILLGESGVGKTAIAEGLAIRIVQAEV 340 (591)
Q Consensus 277 ~~~l~~~~r~~~~~~vvG~~~~i~~l~~~L~~~~---------------~~-~ilL~GppGvGKT~la~~lA~~l~~~~~ 340 (591)
..-|+++++|.....+.|.......+...|.... .. .++++||||+|||+.++.++..+
T Consensus 307 ~~~~~~k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~----- 381 (871)
T KOG1968|consen 307 GAGWTEKYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKEL----- 381 (871)
T ss_pred ccccccccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhc-----
Confidence 4678999999999999998888888887776541 01 25899999999999999999987
Q ss_pred CccccCceEEEeehhhhhcccccc---chHH--HHHHHHHHH-----HHhcCCeEEEEcCcchhhcCCCCCCCCCCccHH
Q 007723 341 PVFLLSKRIMSLDMGLLMAGAKER---GELE--ARVTTLISE-----IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLD 410 (591)
Q Consensus 341 p~~~~~~~~~~ld~~~l~~g~~~~---g~~~--~~i~~i~~~-----~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~ 410 (591)
+..+++.|.+..-.+.... |++. +.+...+.. -.+....||++||++-+.+ .. ..
T Consensus 382 -----g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~-~d---------Rg 446 (871)
T KOG1968|consen 382 -----GFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFG-ED---------RG 446 (871)
T ss_pred -----ccceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccc-hh---------hh
Confidence 6677777766443221110 0000 001111100 0012356999999999965 21 11
Q ss_pred HHHhhcccccCCcEEEEecCChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHH
Q 007723 411 ISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAV 490 (591)
Q Consensus 411 ~~n~L~~~le~g~v~lI~att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~ 490 (591)
....|-..+..-..-+|+++|.-. .....++.+-|.-++|..|+.+.+...+..++... ++.|+++.++.++
T Consensus 447 ~v~~l~~l~~ks~~Piv~~cndr~----~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~se----~~ki~~~~l~~~s 518 (871)
T KOG1968|consen 447 GVSKLSSLCKKSSRPLVCTCNDRN----LPKSRALSRACSDLRFSKPSSELIRSRIMSICKSE----GIKISDDVLEEIS 518 (871)
T ss_pred hHHHHHHHHHhccCCeEEEecCCC----CccccchhhhcceeeecCCcHHHHHhhhhhhhccc----ceecCcHHHHHHH
Confidence 222222333322233444445431 22334555555569999999999988888777665 7889999999999
Q ss_pred HHhHHhhhcCCCcHHHHHHHHHH
Q 007723 491 HLSARYISDRYLPDKAIDLVDEA 513 (591)
Q Consensus 491 ~~s~r~i~~~~lp~~ai~lld~a 513 (591)
+++...++. .|..|...
T Consensus 519 ~~~~~DiR~------~i~~lq~~ 535 (871)
T KOG1968|consen 519 KLSGGDIRQ------IIMQLQFW 535 (871)
T ss_pred HhcccCHHH------HHHHHhhh
Confidence 999776655 45555444
No 272
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.90 E-value=0.00039 Score=72.63 Aligned_cols=86 Identities=20% Similarity=0.268 Sum_probs=59.1
Q ss_pred cCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCCcEEEEecCChhHHHhhhcc----------cHHHHccC-
Q 007723 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEK----------DKALARRF- 449 (591)
Q Consensus 381 ~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g~v~lI~att~~e~~~~~~~----------d~aL~~Rf- 449 (591)
..+.|+||||+|++.+ +...++.+.++.+++-.++.+|.+..+.-..+.+.. ......+|
T Consensus 171 ~~~iViiIDdLDR~~~---------~~i~~~l~~ik~~~~~~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~yLeKii 241 (325)
T PF07693_consen 171 KKRIVIIIDDLDRCSP---------EEIVELLEAIKLLLDFPNIIFILAFDPEILEKAIEKNYGEGFDEIDGREYLEKII 241 (325)
T ss_pred CceEEEEEcchhcCCc---------HHHHHHHHHHHHhcCCCCeEEEEEecHHHHHHHHHhhcCcccccccHHHHHHhhc
Confidence 4578999999999921 224567777778888788999988887754433321 12334444
Q ss_pred c-ceeecCCCHHHHHHHHHHHHHHHHh
Q 007723 450 Q-PVLISEPSQEDAVRILLGLREKYEA 475 (591)
Q Consensus 450 ~-~i~i~~p~~~e~~~iL~~~~~~~~~ 475 (591)
+ .+.+++|+..+....+......+..
T Consensus 242 q~~~~lP~~~~~~~~~~~~~~~~~~~~ 268 (325)
T PF07693_consen 242 QVPFSLPPPSPSDLERYLNELLESLES 268 (325)
T ss_pred CeEEEeCCCCHHHHHHHHHHHHHHhhh
Confidence 4 4888888888888888777655543
No 273
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.90 E-value=0.00027 Score=69.79 Aligned_cols=177 Identities=17% Similarity=0.161 Sum_probs=98.5
Q ss_pred HHHHHHHHHHhcCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhh---------hc--cccccc-
Q 007723 298 EIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLL---------MA--GAKERG- 365 (591)
Q Consensus 298 ~i~~l~~~L~~~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l---------~~--g~~~~g- 365 (591)
.+..+...+. ....-+.++|+-|+|||.+.+++...+.+..+- ++.+|-..+ +. ....+.
T Consensus 39 ~l~~l~~~i~-d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~-------~v~i~~~~~s~~~~~~ai~~~l~~~p~~~ 110 (269)
T COG3267 39 ALLMLHAAIA-DGQGILAVTGEVGSGKTVLRRALLASLNEDQVA-------VVVIDKPTLSDATLLEAIVADLESQPKVN 110 (269)
T ss_pred HHHHHHHHHh-cCCceEEEEecCCCchhHHHHHHHHhcCCCceE-------EEEecCcchhHHHHHHHHHHHhccCccch
Confidence 4444444433 333456799999999999999777666443221 123322111 00 011111
Q ss_pred ---hHHHHHHHHHHHHHhcC-CeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhccccc-----CCcEEEEecCChhHHH
Q 007723 366 ---ELEARVTTLISEIQKSG-DVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG-----RGELQCIASTTQDEHR 436 (591)
Q Consensus 366 ---~~~~~i~~i~~~~~~~~-~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le-----~g~v~lI~att~~e~~ 436 (591)
..++.-+.+.....+.+ +.++++||+|.+ +.+....|+-+.+ .+.+.++....+.-..
T Consensus 111 ~~~~~e~~~~~L~al~~~g~r~v~l~vdEah~L-------------~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~ 177 (269)
T COG3267 111 VNAVLEQIDRELAALVKKGKRPVVLMVDEAHDL-------------NDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRP 177 (269)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCeEEeehhHhhh-------------ChhHHHHHHHHHhhcccccCceeeeecCCcccch
Confidence 22233333444444444 489999999999 3333444443332 2334444444442111
Q ss_pred hh-hcccHHHHccCcc-eeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHh
Q 007723 437 TQ-FEKDKALARRFQP-VLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (591)
Q Consensus 437 ~~-~~~d~aL~~Rf~~-i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~ 496 (591)
.. ...-..+..||.. |.+.+.+.+++...|+...+.-. ...--++++++..+...+++|
T Consensus 178 ~lr~~~l~e~~~R~~ir~~l~P~~~~~t~~yl~~~Le~a~-~~~~l~~~~a~~~i~~~sqg~ 238 (269)
T COG3267 178 RLRLPVLRELEQRIDIRIELPPLTEAETGLYLRHRLEGAG-LPEPLFSDDALLLIHEASQGI 238 (269)
T ss_pred hhchHHHHhhhheEEEEEecCCcChHHHHHHHHHHHhccC-CCcccCChhHHHHHHHHhccc
Confidence 10 0111345568986 88888899989999888776541 222346888999998888774
No 274
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=97.90 E-value=4.9e-05 Score=78.85 Aligned_cols=69 Identities=14% Similarity=0.181 Sum_probs=50.3
Q ss_pred EEEEecCChhHHHhhh--cccHHHHccCcceeecCC-CHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHh
Q 007723 424 LQCIASTTQDEHRTQF--EKDKALARRFQPVLISEP-SQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLS 493 (591)
Q Consensus 424 v~lI~att~~e~~~~~--~~d~aL~~Rf~~i~i~~p-~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s 493 (591)
.++|+.||+.+|.++. +..++|.+|+..|.++.. ...+-.+|.+.+..+- .-.+..+.|.+++.++..+
T Consensus 275 ~liiAhsNe~E~~~f~~~~~~eAf~DRi~~I~VPY~L~~s~E~kIY~k~~~~s-~l~~~h~aP~~L~~aA~f~ 346 (358)
T PF08298_consen 275 ELIIAHSNEEEYNKFKNNKNNEAFKDRIEVIKVPYCLRVSEEVKIYEKLIGKS-DLRDAHIAPHTLEMAARFA 346 (358)
T ss_pred eeEEecCCHHHHHHHhccccchhhhhheEEEeccccCCHHHHHHHHHHHhhhc-cccccccCchHHHHHHHHH
Confidence 4789999999998754 356899999998888876 4577777776665432 1125678888888777664
No 275
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.90 E-value=0.00017 Score=74.81 Aligned_cols=160 Identities=20% Similarity=0.224 Sum_probs=89.3
Q ss_pred CccCCcHHHHHHHHHHHHhcC---CCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhh--c-----
Q 007723 290 DPVIGRETEIQRIIQILCRRT---KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM--A----- 359 (591)
Q Consensus 290 ~~vvG~~~~i~~l~~~L~~~~---~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~--~----- 359 (591)
..|.+|+.+|+.+...+.... +.+++|+|.+|||||.+++.+-+......+-....+|-.+.+-...++ .
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~IL~~~~~~d~ 85 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKILNKSQLADK 85 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHHHHHhccCCC
Confidence 357899999999999887643 345689999999999999999887722111111111110000000111 1
Q ss_pred -cccccchHHHHHHHHHHHHHh-------cCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhc---ccccCCcEEEEe
Q 007723 360 -GAKERGELEARVTTLISEIQK-------SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLK---PSLGRGELQCIA 428 (591)
Q Consensus 360 -g~~~~g~~~~~i~~i~~~~~~-------~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~---~~le~g~v~lI~ 428 (591)
|..-.|. .+.+..++..+.+ +...+|++|.++.+-+. ..-+.+.|. .++....+.+|.
T Consensus 86 dg~~~~~~-~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~----------~a~ll~~l~~L~el~~~~~i~iil 154 (438)
T KOG2543|consen 86 DGDKVEGD-AENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDM----------DAILLQCLFRLYELLNEPTIVIIL 154 (438)
T ss_pred chhhhhhH-HHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhcc----------chHHHHHHHHHHHHhCCCceEEEE
Confidence 1111221 1223333333322 35789999999999422 222333332 333455666665
Q ss_pred cCChhHHHhhhcccHHHHc---cCc--ceeecCCCHHHHHHHHHH
Q 007723 429 STTQDEHRTQFEKDKALAR---RFQ--PVLISEPSQEDAVRILLG 468 (591)
Q Consensus 429 att~~e~~~~~~~d~aL~~---Rf~--~i~i~~p~~~e~~~iL~~ 468 (591)
.....+ ..... -+. +++++.++.+++..|+.+
T Consensus 155 s~~~~e--------~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~ 191 (438)
T KOG2543|consen 155 SAPSCE--------KQYLINTGTLEIVVLHFPQYSVEETQVILSR 191 (438)
T ss_pred eccccH--------HHhhcccCCCCceEEecCCCCHHHHHHHHhc
Confidence 554433 11121 222 488999999999999865
No 276
>PRK10536 hypothetical protein; Provisional
Probab=97.85 E-value=0.00023 Score=71.20 Aligned_cols=46 Identities=24% Similarity=0.323 Sum_probs=37.0
Q ss_pred CCCccCCcHHHHHHHHHHHHhcCCCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 288 LIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 288 ~~~~vvG~~~~i~~l~~~L~~~~~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
.+..+.++......+...+.. ...++++||+|||||+|+.+++...
T Consensus 53 ~~~~i~p~n~~Q~~~l~al~~--~~lV~i~G~aGTGKT~La~a~a~~~ 98 (262)
T PRK10536 53 DTSPILARNEAQAHYLKAIES--KQLIFATGEAGCGKTWISAAKAAEA 98 (262)
T ss_pred CCccccCCCHHHHHHHHHHhc--CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 345677788888888887765 3478899999999999999999854
No 277
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.84 E-value=0.00045 Score=84.40 Aligned_cols=69 Identities=25% Similarity=0.384 Sum_probs=52.2
Q ss_pred CchHHHhhchhcccccc---cCCCCccCCcHHHHHHHHHHHHh--cCCCCCeEecCCCCcHHHHHHHHHHHHHh
Q 007723 269 RASALEQFCVDLTARAS---EELIDPVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 269 ~~~~l~~~~~~l~~~~r---~~~~~~vvG~~~~i~~l~~~L~~--~~~~~ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
+...+++...+...+.. +..++++||++..++.+...|.- ....-+.|+|++|+||||||++++..+..
T Consensus 160 E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~ 233 (1153)
T PLN03210 160 EAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSR 233 (1153)
T ss_pred HHHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhh
Confidence 44566666666666653 34678899999999999887753 23344679999999999999999988743
No 278
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.84 E-value=7.6e-05 Score=75.79 Aligned_cols=167 Identities=14% Similarity=0.210 Sum_probs=91.1
Q ss_pred cCCcHHHHHHHHHH---HHhcCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhccccccchHH
Q 007723 292 VIGRETEIQRIIQI---LCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELE 368 (591)
Q Consensus 292 vvG~~~~i~~l~~~---L~~~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~~~~g~~~ 368 (591)
+|=-++.++.+..+ |. ..++|.+|+|.+|+||+++++..+... +..++++.+.. ++ ...+|.
T Consensus 10 lVlf~~ai~hi~ri~RvL~-~~~Gh~LLvG~~GsGr~sl~rLaa~i~----------~~~~~~i~~~~---~y-~~~~f~ 74 (268)
T PF12780_consen 10 LVLFDEAIEHIARISRVLS-QPRGHALLVGVGGSGRQSLARLAAFIC----------GYEVFQIEITK---GY-SIKDFK 74 (268)
T ss_dssp ----HHHHHHHHHHHHHHC-STTEEEEEECTTTSCHHHHHHHHHHHT----------TEEEE-TTTST---TT-HHHHHH
T ss_pred eeeHHHHHHHHHHHHHHHc-CCCCCeEEecCCCccHHHHHHHHHHHh----------ccceEEEEeeC---Cc-CHHHHH
Confidence 44456666665554 43 455789999999999999999666543 67777766432 21 245677
Q ss_pred HHHHHHHHHHH-hcCCeEEEEcCcch-----------hhcCCCCCCCCC-CccHHHHHhhcccc----------------
Q 007723 369 ARVTTLISEIQ-KSGDVILFIDEVHT-----------LIGSGTVGRGNK-GTGLDISNLLKPSL---------------- 419 (591)
Q Consensus 369 ~~i~~i~~~~~-~~~~~ILfIDEi~~-----------L~~~~~~~~~~~-~~~~~~~n~L~~~l---------------- 419 (591)
+.++.++..+- +..+.+++|+|-+- |+..|....-=. +.-..+.+.+++..
T Consensus 75 ~dLk~~~~~ag~~~~~~vfll~d~qi~~~~fLe~in~LL~sGeip~LF~~eE~~~i~~~l~~~~~~~~~~~~~~~~~~~F 154 (268)
T PF12780_consen 75 EDLKKALQKAGIKGKPTVFLLTDSQIVDESFLEDINSLLSSGEIPNLFTKEELDNIISSLREEAKAEGISDSRESLYEFF 154 (268)
T ss_dssp HHHHHHHHHHHCS-S-EEEEEECCCSSSCHHHHHHHHHHHCSS-TTTS-TCHHHHHHHHHHHHHHHCT--SSHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCeEEEecCcccchHhHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHHHHHHcCCCCchHHHHHHH
Confidence 77777776554 34577888877542 222222110000 00111222222111
Q ss_pred -c--CCcEEEEecCC--hhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHH
Q 007723 420 -G--RGELQCIASTT--QDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKY 473 (591)
Q Consensus 420 -e--~g~v~lI~att--~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~ 473 (591)
+ +.++.+|.+.. .+.++.....-|+|.++|.+..+.+++.+.+..+-.......
T Consensus 155 ~~rvr~nLHivl~~sp~~~~~r~~~~~fPaL~~~ctIdW~~~W~~eaL~~Va~~~l~~~ 213 (268)
T PF12780_consen 155 IERVRKNLHIVLCMSPVGPNFRDRCRSFPALVNCCTIDWFDPWPEEALLSVANKFLSDI 213 (268)
T ss_dssp HHHHCCCEEEEEEESTTTTCCCHHHHHHCCHHHHSEEEEEES--HHHHHHHHHHHCCHH
T ss_pred HHHHHhheeEEEEECCCCchHHHHHHhCcchhcccEEEeCCcCCHHHHHHHHHHHHHhh
Confidence 0 23444544443 333444445568899999988999999998888776655443
No 279
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.80 E-value=7.8e-05 Score=68.88 Aligned_cols=24 Identities=38% Similarity=0.627 Sum_probs=21.6
Q ss_pred CeEecCCCCcHHHHHHHHHHHHHh
Q 007723 314 PILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 314 ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
++|+||||+|||+++..++.....
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~ 25 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT 25 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh
Confidence 679999999999999999988754
No 280
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.79 E-value=1e-05 Score=76.41 Aligned_cols=134 Identities=16% Similarity=0.209 Sum_probs=63.0
Q ss_pred CCeEecCCCCcHHHHHHHHHHHHHhCCCC-------ccc-cCce--EEEeehhh----hhcc---------ccccch---
Q 007723 313 NPILLGESGVGKTAIAEGLAIRIVQAEVP-------VFL-LSKR--IMSLDMGL----LMAG---------AKERGE--- 366 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l~~~~~p-------~~~-~~~~--~~~ld~~~----l~~g---------~~~~g~--- 366 (591)
+++|+|+||+||||+++.+...+...+++ ... .+.+ +.-+++.. .++. .+|.-.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~~v~Gf~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~~e~ 80 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKGLPVGGFYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVDLES 80 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTCGGEEEEEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-HHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccCCccceEEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEcHHH
Confidence 57899999999999999999998543322 001 1111 11222210 0000 011111
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCCcEEEEecCChhHHHhhhcccHHHH
Q 007723 367 LEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALA 446 (591)
Q Consensus 367 ~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g~v~lI~att~~e~~~~~~~d~aL~ 446 (591)
|+......+.... ....+++||||..|= -......+.+..+|+ ....+|++-.... ....-..+.
T Consensus 81 fe~~~~~~L~~~~-~~~~liviDEIG~mE----------l~~~~F~~~v~~~l~-s~~~vi~vv~~~~---~~~~l~~i~ 145 (168)
T PF03266_consen 81 FEEIGLPALRNAL-SSSDLIVIDEIGKME----------LKSPGFREAVEKLLD-SNKPVIGVVHKRS---DNPFLEEIK 145 (168)
T ss_dssp HHCCCCCCCHHHH-HCCHEEEE---STTC----------CC-CHHHHHHHHHHC-TTSEEEEE--SS-----SCCHHHHH
T ss_pred HHHHHHHHHHhhc-CCCCEEEEeccchhh----------hcCHHHHHHHHHHHc-CCCcEEEEEecCC---CcHHHHHHH
Confidence 1111111222211 355699999999882 224556777777777 4444666544431 122336777
Q ss_pred cc--CcceeecCCCHHH
Q 007723 447 RR--FQPVLISEPSQED 461 (591)
Q Consensus 447 ~R--f~~i~i~~p~~~e 461 (591)
+| +..+.+..-+.+.
T Consensus 146 ~~~~~~i~~vt~~NRd~ 162 (168)
T PF03266_consen 146 RRPDVKIFEVTEENRDA 162 (168)
T ss_dssp TTTTSEEEE--TTTCCC
T ss_pred hCCCcEEEEeChhHHhh
Confidence 77 5556665554433
No 281
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.79 E-value=3.5e-05 Score=77.35 Aligned_cols=112 Identities=19% Similarity=0.278 Sum_probs=68.3
Q ss_pred cCCcHHHHHHHHHHHHh----cCCC-CC--eEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhcccccc
Q 007723 292 VIGRETEIQRIIQILCR----RTKN-NP--ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKER 364 (591)
Q Consensus 292 vvG~~~~i~~l~~~L~~----~~~~-~i--lL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~~~~ 364 (591)
+.||.-..+.++..+.. .... ++ -|+|++||||..+++.||+.+..++....+...-+-..+.. ..++.
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP----~~~~i 159 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFP----HASKI 159 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCC----ChHHH
Confidence 67887777766666543 2222 22 37899999999999999999876542211111101111111 01122
Q ss_pred chHHHHHHH-HHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhccccc
Q 007723 365 GELEARVTT-LISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG 420 (591)
Q Consensus 365 g~~~~~i~~-i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le 420 (591)
.+....++. +.+.+...+..++++||+|.| ...+.+.|++.++
T Consensus 160 e~Yk~eL~~~v~~~v~~C~rslFIFDE~DKm-------------p~gLld~lkpfLd 203 (344)
T KOG2170|consen 160 EDYKEELKNRVRGTVQACQRSLFIFDEVDKL-------------PPGLLDVLKPFLD 203 (344)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEechhhhc-------------CHhHHHHHhhhhc
Confidence 233333333 334455678899999999999 6678889998886
No 282
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=97.78 E-value=0.0014 Score=70.26 Aligned_cols=128 Identities=16% Similarity=0.205 Sum_probs=85.4
Q ss_pred CCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhccccc---C---CcEEEEecCChhHHH---hhhcccHHHHccCc--
Q 007723 382 GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG---R---GELQCIASTTQDEHR---TQFEKDKALARRFQ-- 450 (591)
Q Consensus 382 ~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le---~---g~v~lI~att~~e~~---~~~~~d~aL~~Rf~-- 450 (591)
.+.+|+|||+..|..-... .......|.|+.++. . ..+.+|.+.||+-+. .-+..-++|.+|+.
T Consensus 239 ~GLlI~lDE~e~l~kl~~~-----~~R~~~ye~lr~lidd~~~G~~~gL~~~~~gTPef~eD~rrGv~sY~AL~~RL~~~ 313 (416)
T PF10923_consen 239 KGLLILLDELENLYKLRND-----QAREKNYEALRQLIDDIDQGRAPGLYFVFAGTPEFFEDGRRGVYSYEALAQRLAEE 313 (416)
T ss_pred CceEEEEechHHHHhcCCh-----HHHHHHHHHHHHHHHHHhcCCCCceEEEEeeCHHHhhCccccccccHHHHHHHhcc
Confidence 5789999999999654332 113345566666653 2 357888888987551 11222366666532
Q ss_pred -------------ceeecCCCHHHHHHHHHHHHHHHHhhcCC--CCcHHHHHHHHHHhHHhhhcCC--CcH----HHHHH
Q 007723 451 -------------PVLISEPSQEDAVRILLGLREKYEAHHNC--KFTLEAINAAVHLSARYISDRY--LPD----KAIDL 509 (591)
Q Consensus 451 -------------~i~i~~p~~~e~~~iL~~~~~~~~~~~~i--~i~~~al~~l~~~s~r~i~~~~--lp~----~ai~l 509 (591)
+|.+.+.+.+++..++.+++.-|...++. .++++.+..+++.....+.... .|+ +-|++
T Consensus 314 ~~~~~~~~n~~~pvIrL~~l~~eel~~l~~klr~i~a~~~~~~~~v~d~~l~~~~~~~~~r~G~~~~~tPR~~ik~fv~~ 393 (416)
T PF10923_consen 314 FFADDGFDNLRAPVIRLQPLTPEELLELLEKLRDIYAEAYGYESRVDDEELKAFAQHVAGRLGGDVFVTPREFIKDFVDV 393 (416)
T ss_pred ccccccccCccCceecCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhccCcccccCHHHHHHHHHHH
Confidence 37788889999999999999888876654 7899999999988876654432 244 44556
Q ss_pred HHHHh
Q 007723 510 VDEAG 514 (591)
Q Consensus 510 ld~a~ 514 (591)
||...
T Consensus 394 Ld~~~ 398 (416)
T PF10923_consen 394 LDILE 398 (416)
T ss_pred HHHHH
Confidence 65443
No 283
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.77 E-value=0.00014 Score=86.08 Aligned_cols=150 Identities=17% Similarity=0.294 Sum_probs=91.9
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhh-----cccc----ccchHHHHHHHHHHHHHhc
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM-----AGAK----ERGELEARVTTLISEIQKS 381 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~-----~g~~----~~g~~~~~i~~i~~~~~~~ 381 (591)
..+++|-|.||+|||+|+.+||+.. +..++.+++++-. .|.. ..|+|.-.=..++..+ +.
T Consensus 1543 ~kpilLEGsPGVGKTSlItaLAr~t----------G~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~am-r~ 1611 (4600)
T COG5271 1543 GKPILLEGSPGVGKTSLITALARKT----------GKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAM-RD 1611 (4600)
T ss_pred CCceeecCCCCccHHHHHHHHHHHh----------cCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHh-hc
Confidence 4678999999999999999999987 6677777766321 2221 1233321112233333 34
Q ss_pred CCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhccccc----------------CCcEEEEecCChhHHHh-hhcccHH
Q 007723 382 GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG----------------RGELQCIASTTQDEHRT-QFEKDKA 444 (591)
Q Consensus 382 ~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le----------------~g~v~lI~att~~e~~~-~~~~d~a 444 (591)
++ -+++||+... ++.+..-|...|. ..++++.+|-||..-.. --.+...
T Consensus 1612 G~-WVlLDEiNLa-------------SQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkS 1677 (4600)
T COG5271 1612 GG-WVLLDEINLA-------------SQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKS 1677 (4600)
T ss_pred CC-EEEeehhhhh-------------HHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHH
Confidence 44 4566999766 3333433333332 23567888877753211 1135789
Q ss_pred HHccCcceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHh
Q 007723 445 LARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLS 493 (591)
Q Consensus 445 L~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s 493 (591)
+.+||.+|.+...+.+++..|+.+.-. ++.++-.-.++++-
T Consensus 1678 F~nRFsvV~~d~lt~dDi~~Ia~~~yp--------~v~~d~~~kiik~m 1718 (4600)
T COG5271 1678 FLNRFSVVKMDGLTTDDITHIANKMYP--------QVNEDWRLKIIKFM 1718 (4600)
T ss_pred HhhhhheEEecccccchHHHHHHhhCC--------ccChHHHHHHHHHH
Confidence 999999999999999998888754322 34455544444443
No 284
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.77 E-value=6.1e-05 Score=74.82 Aligned_cols=123 Identities=19% Similarity=0.262 Sum_probs=73.6
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcC
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDE 390 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDE 390 (591)
.....++||+|||||..++.+|+.+ ++.++.++++..+. ...+.+++..+... +.-+++||
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~l----------G~~~~vfnc~~~~~--------~~~l~ril~G~~~~-GaW~cfde 92 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARAL----------GRFVVVFNCSEQMD--------YQSLSRILKGLAQS-GAWLCFDE 92 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCT----------T--EEEEETTSSS---------HHHHHHHHHHHHHH-T-EEEEET
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHh----------CCeEEEeccccccc--------HHHHHHHHHHHhhc-Cchhhhhh
Confidence 3455789999999999999999987 77888888765331 22356666666555 45677799
Q ss_pred cchhhcCCCCCCCCCCccHHHHHhhc-------cccc---------------CCcEEEEecCChhHHHhhhcccHHHHcc
Q 007723 391 VHTLIGSGTVGRGNKGTGLDISNLLK-------PSLG---------------RGELQCIASTTQDEHRTQFEKDKALARR 448 (591)
Q Consensus 391 i~~L~~~~~~~~~~~~~~~~~~n~L~-------~~le---------------~g~v~lI~att~~e~~~~~~~d~aL~~R 448 (591)
+++| +.++...+- ..+. .....+..+.|+ .|....++++.|+.-
T Consensus 93 fnrl-------------~~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np-~y~gr~~LP~nLk~l 158 (231)
T PF12774_consen 93 FNRL-------------SEEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNP-GYAGRSELPENLKAL 158 (231)
T ss_dssp CCCS-------------SHHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B--CCCC--S-HHHCTT
T ss_pred hhhh-------------hHHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeecc-ccCCcccCCHhHHHH
Confidence 9998 322222211 1111 112344455555 354456788899999
Q ss_pred CcceeecCCCHHHHHHHH
Q 007723 449 FQPVLISEPSQEDAVRIL 466 (591)
Q Consensus 449 f~~i~i~~p~~~e~~~iL 466 (591)
|.+|.+..|+...+.+++
T Consensus 159 FRpvam~~PD~~~I~ei~ 176 (231)
T PF12774_consen 159 FRPVAMMVPDLSLIAEIL 176 (231)
T ss_dssp EEEEE--S--HHHHHHHH
T ss_pred hheeEEeCCCHHHHHHHH
Confidence 999999999998877776
No 285
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.69 E-value=0.00017 Score=77.68 Aligned_cols=138 Identities=23% Similarity=0.278 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHhcCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhccccccchHHHHHHHHHH
Q 007723 297 TEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLIS 376 (591)
Q Consensus 297 ~~i~~l~~~L~~~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~ 376 (591)
.-+.++++.+..... .++++||.+|||||+++.+.+... +. ++.++..++... .-+..+..+.+..
T Consensus 24 ~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~---------~~-~iy~~~~d~~~~---~~~l~d~~~~~~~ 89 (398)
T COG1373 24 KLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLL---------EE-IIYINFDDLRLD---RIELLDLLRAYIE 89 (398)
T ss_pred hhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCC---------cc-eEEEEecchhcc---hhhHHHHHHHHHH
Confidence 344555555444333 678999999999999977776552 11 333333322211 1111111222222
Q ss_pred HHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCCcE-EEEecCChhHHHhhhcccHHHHccCcceeec
Q 007723 377 EIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGEL-QCIASTTQDEHRTQFEKDKALARRFQPVLIS 455 (591)
Q Consensus 377 ~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g~v-~lI~att~~e~~~~~~~d~aL~~Rf~~i~i~ 455 (591)
. .......+|+||||.+ .+....++....++.. ++|..++..-+ ..+....|..|...+.+.
T Consensus 90 ~-~~~~~~yifLDEIq~v--------------~~W~~~lk~l~d~~~~~v~itgsss~ll--~~~~~~~L~GR~~~~~l~ 152 (398)
T COG1373 90 L-KEREKSYIFLDEIQNV--------------PDWERALKYLYDRGNLDVLITGSSSSLL--SKEISESLAGRGKDLELY 152 (398)
T ss_pred h-hccCCceEEEecccCc--------------hhHHHHHHHHHccccceEEEECCchhhh--ccchhhhcCCCceeEEEC
Confidence 1 1124569999999998 2346677777776653 33333333221 223446777898889999
Q ss_pred CCCHHHHHHH
Q 007723 456 EPSQEDAVRI 465 (591)
Q Consensus 456 ~p~~~e~~~i 465 (591)
+.+..|....
T Consensus 153 PlSF~Efl~~ 162 (398)
T COG1373 153 PLSFREFLKL 162 (398)
T ss_pred CCCHHHHHhh
Confidence 9999887654
No 286
>PTZ00202 tuzin; Provisional
Probab=97.64 E-value=0.0011 Score=70.60 Aligned_cols=161 Identities=16% Similarity=0.190 Sum_probs=89.4
Q ss_pred cCCCCccCCcHHHHHHHHHHHHhcCC---CCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehh---hhh-
Q 007723 286 EELIDPVIGRETEIQRIIQILCRRTK---NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMG---LLM- 358 (591)
Q Consensus 286 ~~~~~~vvG~~~~i~~l~~~L~~~~~---~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~---~l~- 358 (591)
|.....++||+.++..|..+|..... .-++|+||+|+|||++++.+...+. ...+..|+. +++
T Consensus 258 Pa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----------~~qL~vNprg~eElLr 327 (550)
T PTZ00202 258 PAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----------MPAVFVDVRGTEDTLR 327 (550)
T ss_pred CCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----------ceEEEECCCCHHHHHH
Confidence 44567899999999999999875332 2347999999999999999997662 223333332 111
Q ss_pred -----ccc---cccchHHHHHHHHHHHHHhc--CCeEEEE--cCcchhhcCCCCCCCCCCccHHHHHhhcc-cccCCcEE
Q 007723 359 -----AGA---KERGELEARVTTLISEIQKS--GDVILFI--DEVHTLIGSGTVGRGNKGTGLDISNLLKP-SLGRGELQ 425 (591)
Q Consensus 359 -----~g~---~~~g~~~~~i~~i~~~~~~~--~~~ILfI--DEi~~L~~~~~~~~~~~~~~~~~~n~L~~-~le~g~v~ 425 (591)
.|. ...++.-..+.+.+...... ...||+| -|-..| ..+.|-... .-++.-..
T Consensus 328 ~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l--------------~rvyne~v~la~drr~ch 393 (550)
T PTZ00202 328 SVVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSL--------------QRVYNEVVALACDRRLCH 393 (550)
T ss_pred HHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcH--------------HHHHHHHHHHHccchhhe
Confidence 121 12234444455544444333 3344443 233333 112221111 11222233
Q ss_pred EEecCChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHH
Q 007723 426 CIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYE 474 (591)
Q Consensus 426 lI~att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~ 474 (591)
+|....-+ .+........|++...++..+.++..+..++..+...
T Consensus 394 ~v~evple----slt~~~~~lprldf~~vp~fsr~qaf~y~~h~~dal~ 438 (550)
T PTZ00202 394 VVIEVPLE----SLTIANTLLPRLDFYLVPNFSRSQAFAYTQHAIDALS 438 (550)
T ss_pred eeeeehHh----hcchhcccCccceeEecCCCCHHHHHHHHhhccchHH
Confidence 33322221 1222344556888888999999998888877665543
No 287
>PHA02774 E1; Provisional
Probab=97.61 E-value=0.0002 Score=78.75 Aligned_cols=38 Identities=18% Similarity=0.238 Sum_probs=30.3
Q ss_pred HHHHHHHHHHh-cCCCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 298 EIQRIIQILCR-RTKNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 298 ~i~~l~~~L~~-~~~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
-+..|..++.. +++++++|+||||||||+++.+|++.+
T Consensus 420 fl~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~~L 458 (613)
T PHA02774 420 FLTALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFL 458 (613)
T ss_pred HHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 44555556655 345789999999999999999999987
No 288
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.58 E-value=0.00029 Score=62.58 Aligned_cols=48 Identities=13% Similarity=0.299 Sum_probs=36.5
Q ss_pred cCCcHHHHHHHHHHHHh----cCC-CCCe--EecCCCCcHHHHHHHHHHHHHhCC
Q 007723 292 VIGRETEIQRIIQILCR----RTK-NNPI--LLGESGVGKTAIAEGLAIRIVQAE 339 (591)
Q Consensus 292 vvG~~~~i~~l~~~L~~----~~~-~~il--L~GppGvGKT~la~~lA~~l~~~~ 339 (591)
++||.-+.+.+...+.. +.. .+++ |.|++|||||.+++.||+.+....
T Consensus 27 l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~G 81 (127)
T PF06309_consen 27 LFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHLYKSG 81 (127)
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHHHhcc
Confidence 78999888777776654 222 2333 889999999999999999986543
No 289
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.52 E-value=9.4e-05 Score=73.83 Aligned_cols=152 Identities=20% Similarity=0.297 Sum_probs=83.5
Q ss_pred CcHHHHHHHHHHHHh---cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhccc-------cc
Q 007723 294 GRETEIQRIIQILCR---RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGA-------KE 363 (591)
Q Consensus 294 G~~~~i~~l~~~L~~---~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~-------~~ 363 (591)
-+....++.++.+.+ +...+++|.||.|.||+.||+.+...-... .....+++++++..+-... ..
T Consensus 188 trnp~fnrmieqierva~rsr~p~ll~gptgagksflarriyelk~ar----hq~sg~fvevncatlrgd~amsalfghv 263 (531)
T COG4650 188 TRNPHFNRMIEQIERVAIRSRAPILLNGPTGAGKSFLARRIYELKQAR----HQFSGAFVEVNCATLRGDTAMSALFGHV 263 (531)
T ss_pred ccChHHHHHHHHHHHHHhhccCCeEeecCCCcchhHHHHHHHHHHHHH----HhcCCceEEEeeeeecCchHHHHHHhhh
Confidence 344455555544443 567789999999999999999986532110 1114456677665432100 01
Q ss_pred cchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCC-------------cEEEEecC
Q 007723 364 RGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-------------ELQCIAST 430 (591)
Q Consensus 364 ~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g-------------~v~lI~at 430 (591)
+|.|...-..--..+..++++.||+|||..| ..+-+.+|+..+++. .+++|+-|
T Consensus 264 kgaftga~~~r~gllrsadggmlfldeigel-------------gadeqamllkaieekrf~pfgsdr~v~sdfqliagt 330 (531)
T COG4650 264 KGAFTGARESREGLLRSADGGMLFLDEIGEL-------------GADEQAMLLKAIEEKRFYPFGSDRQVSSDFQLIAGT 330 (531)
T ss_pred ccccccchhhhhhhhccCCCceEehHhhhhc-------------CccHHHHHHHHHHhhccCCCCCccccccchHHhhhh
Confidence 1212111111111233467899999999999 445567777777643 34556544
Q ss_pred ChhHHHhhhc---ccHHHHccCcceeecCCCHHHHH
Q 007723 431 TQDEHRTQFE---KDKALARRFQPVLISEPSQEDAV 463 (591)
Q Consensus 431 t~~e~~~~~~---~d~aL~~Rf~~i~i~~p~~~e~~ 463 (591)
..+ +++... .-..|.-|+....+..|...++.
T Consensus 331 vrd-lrq~vaeg~fredl~arinlwtf~lpgl~qr~ 365 (531)
T COG4650 331 VRD-LRQLVAEGKFREDLYARINLWTFTLPGLRQRQ 365 (531)
T ss_pred HHH-HHHHHhccchHHHHHHhhheeeeeccccccCc
Confidence 433 222111 12445557766777777654433
No 290
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.50 E-value=0.0014 Score=78.13 Aligned_cols=178 Identities=13% Similarity=0.132 Sum_probs=94.8
Q ss_pred ccCCCCccCCcHHHHHHHHHHHHhcCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehh-----hh--
Q 007723 285 SEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMG-----LL-- 357 (591)
Q Consensus 285 r~~~~~~vvG~~~~i~~l~~~L~~~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~-----~l-- 357 (591)
.|..-..+|-|+..++++... ...+-++++||+|.||||++...+... . ...++.++.. .+
T Consensus 9 ~p~~~~~~~~R~rl~~~l~~~---~~~~~~~v~apaG~GKTtl~~~~~~~~---~------~~~w~~l~~~d~~~~~f~~ 76 (903)
T PRK04841 9 RPVRLHNTVVRERLLAKLSGA---NNYRLVLVTSPAGYGKTTLISQWAAGK---N------NLGWYSLDESDNQPERFAS 76 (903)
T ss_pred CCCCccccCcchHHHHHHhcc---cCCCeEEEECCCCCCHHHHHHHHHHhC---C------CeEEEecCcccCCHHHHHH
Confidence 455555678787666655432 234456899999999999999877532 0 1122222211 00
Q ss_pred --hccc-----c------------ccchHHHHHHHHHHHHHh-cCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcc
Q 007723 358 --MAGA-----K------------ERGELEARVTTLISEIQK-SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKP 417 (591)
Q Consensus 358 --~~g~-----~------------~~g~~~~~i~~i~~~~~~-~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~ 417 (591)
+... . ........+..++..+.. ..+.+|+|||+|.+- ...+...|..
T Consensus 77 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~------------~~~~~~~l~~ 144 (903)
T PRK04841 77 YLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLIT------------NPEIHEAMRF 144 (903)
T ss_pred HHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCC------------ChHHHHHHHH
Confidence 0000 0 001122334445555544 568999999999982 1222333333
Q ss_pred ccc--CCcEEEEecCChhHHHhhhcccHHHH--ccCcceeec--CCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHH
Q 007723 418 SLG--RGELQCIASTTQDEHRTQFEKDKALA--RRFQPVLIS--EPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVH 491 (591)
Q Consensus 418 ~le--~g~v~lI~att~~e~~~~~~~d~aL~--~Rf~~i~i~--~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~ 491 (591)
++. .+.+.+|.++...+ .+.. ..+. ..+..|... ..+.++..+.+.. ..+..++++.+..+.+
T Consensus 145 l~~~~~~~~~lv~~sR~~~---~~~~-~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~-------~~~~~~~~~~~~~l~~ 213 (903)
T PRK04841 145 FLRHQPENLTLVVLSRNLP---PLGI-ANLRVRDQLLEIGSQQLAFDHQEAQQFFDQ-------RLSSPIEAAESSRLCD 213 (903)
T ss_pred HHHhCCCCeEEEEEeCCCC---CCch-HhHHhcCcceecCHHhCCCCHHHHHHHHHh-------ccCCCCCHHHHHHHHH
Confidence 332 34455544443321 1111 1222 223223333 5677887777632 2366788888888888
Q ss_pred HhHHhh
Q 007723 492 LSARYI 497 (591)
Q Consensus 492 ~s~r~i 497 (591)
.+.++.
T Consensus 214 ~t~Gwp 219 (903)
T PRK04841 214 DVEGWA 219 (903)
T ss_pred HhCChH
Confidence 887764
No 291
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.0011 Score=73.70 Aligned_cols=166 Identities=23% Similarity=0.263 Sum_probs=107.2
Q ss_pred HHhcCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeE
Q 007723 306 LCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVI 385 (591)
Q Consensus 306 L~~~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~I 385 (591)
+......+++++||||+|||.++++++.. .. .. ..++..... .++.|+.+..+..++..+....+.+
T Consensus 13 ~~~~~~~~v~~~g~~~~~~t~~~~~~a~~---~~-------~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~a~~~~~~i 79 (494)
T COG0464 13 LGIEPPKGVLLHGPPGTGKTLLARALANE---GA-------EF-LSINGPEIL--SKYVGESELRLRELFEEAEKLAPSI 79 (494)
T ss_pred hCCCCCCCceeeCCCCCchhHHHHHHHhc---cC-------cc-cccCcchhh--hhhhhHHHHHHHHHHHHHHHhCCCe
Confidence 34456678999999999999999999987 11 11 222333322 3567888899999999998887899
Q ss_pred EEEcCcchhhcCCCCCCCCCCccHHHHHhhcccc---cCCcEEEEecCChhHHHhhhcccHHHHc--cCc-ceeecCCCH
Q 007723 386 LFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL---GRGELQCIASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQ 459 (591)
Q Consensus 386 LfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~l---e~g~v~lI~att~~e~~~~~~~d~aL~~--Rf~-~i~i~~p~~ 459 (591)
+++||++.+........ ......+...|...+ .++.+.+++.++.. ..+++++.+ ||. .+.+..|+.
T Consensus 80 i~~d~~~~~~~~~~~~~--~~~~~~v~~~l~~~~d~~~~~~v~~~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~ 152 (494)
T COG0464 80 IFIDEIDALAPKRSSDQ--GEVERRVVAQLLALMDGLKRGQVIVIGATNRP-----DGLDPAKRRPGRFDREIEVNLPDE 152 (494)
T ss_pred EeechhhhcccCccccc--cchhhHHHHHHHHhcccccCCceEEEeecCCc-----cccChhHhCccccceeeecCCCCH
Confidence 99999999977654411 122223344443333 24446677766653 456777776 776 488888988
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCc-HHHHHHHHHHhHHhh
Q 007723 460 EDAVRILLGLREKYEAHHNCKFT-LEAINAAVHLSARYI 497 (591)
Q Consensus 460 ~e~~~iL~~~~~~~~~~~~i~i~-~~al~~l~~~s~r~i 497 (591)
....+|+...... +.+. +..+..++..+.+|.
T Consensus 153 ~~~~ei~~~~~~~------~~~~~~~~~~~~a~~~~~~~ 185 (494)
T COG0464 153 AGRLEILQIHTRL------MFLGPPGTGKTLAARTVGKS 185 (494)
T ss_pred HHHHHHHHHHHhc------CCCcccccHHHHHHhcCCcc
Confidence 8777777554332 2222 344555665555443
No 292
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.43 E-value=0.00081 Score=67.64 Aligned_cols=29 Identities=17% Similarity=0.324 Sum_probs=24.7
Q ss_pred cCCCCCeEecCCCCcHHHHHHHHHHHHHh
Q 007723 309 RTKNNPILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 309 ~~~~~ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
..+..++|+||+|+|||++++.+++.+..
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 45567899999999999999999987743
No 293
>PRK04296 thymidine kinase; Provisional
Probab=97.43 E-value=0.00019 Score=69.21 Aligned_cols=24 Identities=17% Similarity=0.155 Sum_probs=21.1
Q ss_pred CeEecCCCCcHHHHHHHHHHHHHh
Q 007723 314 PILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 314 ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
.+++||+|+||||++..++.++..
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~ 28 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEE 28 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHH
Confidence 478999999999999999988754
No 294
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.42 E-value=0.0011 Score=64.22 Aligned_cols=28 Identities=29% Similarity=0.444 Sum_probs=23.1
Q ss_pred CCCCCeEecCCCCcHHHHHHHHHHHHHh
Q 007723 310 TKNNPILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 310 ~~~~ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
..+-.++.|+||||||+++..+...+..
T Consensus 17 ~~~~~~l~G~aGtGKT~~l~~~~~~~~~ 44 (196)
T PF13604_consen 17 GDRVSVLQGPAGTGKTTLLKALAEALEA 44 (196)
T ss_dssp TCSEEEEEESTTSTHHHHHHHHHHHHHH
T ss_pred CCeEEEEEECCCCCHHHHHHHHHHHHHh
Confidence 3345678899999999999999888755
No 295
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.41 E-value=0.00045 Score=73.01 Aligned_cols=30 Identities=17% Similarity=0.293 Sum_probs=25.3
Q ss_pred cCCCCCeEecCCCCcHHHHHHHHHHHHHhC
Q 007723 309 RTKNNPILLGESGVGKTAIAEGLAIRIVQA 338 (591)
Q Consensus 309 ~~~~~ilL~GppGvGKT~la~~lA~~l~~~ 338 (591)
..+.-.+|+||||||||+|++.|++.+...
T Consensus 167 GkGQR~lIvgppGvGKTTLaK~Ian~I~~n 196 (416)
T PRK09376 167 GKGQRGLIVAPPKAGKTVLLQNIANSITTN 196 (416)
T ss_pred ccCceEEEeCCCCCChhHHHHHHHHHHHhh
Confidence 445668999999999999999999988653
No 296
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.35 E-value=0.00063 Score=72.12 Aligned_cols=128 Identities=16% Similarity=0.152 Sum_probs=68.2
Q ss_pred CCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEE--Ee--ehhhhhccccccchHHHHHHHHHHHHHhcCCeE
Q 007723 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIM--SL--DMGLLMAGAKERGELEARVTTLISEIQKSGDVI 385 (591)
Q Consensus 310 ~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~--~l--d~~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~I 385 (591)
.+.+++|+|++|+|||.|.-.+...+... ...++- .. ++-.-+...+... .-+..+.+++. ....+
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~------~k~R~HFh~Fm~~vh~~l~~~~~~~---~~l~~va~~l~-~~~~l 130 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIK------RKRRVHFHEFMLDVHSRLHQLRGQD---DPLPQVADELA-KESRL 130 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCcc------ccccccccHHHHHHHHHHHHHhCCC---ccHHHHHHHHH-hcCCE
Confidence 46789999999999999999998876321 112211 11 0000000000000 11333444443 23449
Q ss_pred EEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCCcEEEEecCChhHHHhh---------hcccHHHHccCcceeecC
Q 007723 386 LFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQ---------FEKDKALARRFQPVLISE 456 (591)
Q Consensus 386 LfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g~v~lI~att~~e~~~~---------~~~d~aL~~Rf~~i~i~~ 456 (591)
|++||++-- +-+..-+...|...+-+..+++|+|+|..+-.-+ ...-..|.++|.++.+..
T Consensus 131 LcfDEF~V~----------DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~Ly~~gl~r~~Flp~I~~l~~~~~vv~ld~ 200 (362)
T PF03969_consen 131 LCFDEFQVT----------DIADAMILKRLFEALFKRGVVLVATSNRPPEDLYKNGLQRERFLPFIDLLKRRCDVVELDG 200 (362)
T ss_pred EEEeeeecc----------chhHHHHHHHHHHHHHHCCCEEEecCCCChHHHcCCcccHHHHHHHHHHHHhceEEEEecC
Confidence 999999754 0112223333333333556888998886642211 111245667888888877
Q ss_pred C
Q 007723 457 P 457 (591)
Q Consensus 457 p 457 (591)
+
T Consensus 201 ~ 201 (362)
T PF03969_consen 201 G 201 (362)
T ss_pred C
Confidence 7
No 297
>PRK04132 replication factor C small subunit; Provisional
Probab=97.31 E-value=0.00011 Score=84.95 Aligned_cols=49 Identities=18% Similarity=0.358 Sum_probs=46.2
Q ss_pred hhcccccccCCCCccCCcHHHHHHHHHHHHhcCCCCCeEecCCCCcHHH
Q 007723 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTA 326 (591)
Q Consensus 278 ~~l~~~~r~~~~~~vvG~~~~i~~l~~~L~~~~~~~ilL~GppGvGKT~ 326 (591)
.+|.++|||..|++++|++..++.|...+.....+|++|+||||+||+.
T Consensus 7 ~~~~~k~RP~~f~dIiGqe~i~~~Lk~~i~~~~i~h~l~~g~~g~~~cl 55 (846)
T PRK04132 7 KPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKCL 55 (846)
T ss_pred ccHHHhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEECCCCCCccc
Confidence 5899999999999999999999999999998888999999999999974
No 298
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.30 E-value=0.0004 Score=60.47 Aligned_cols=24 Identities=29% Similarity=0.587 Sum_probs=22.1
Q ss_pred CeEecCCCCcHHHHHHHHHHHHHh
Q 007723 314 PILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 314 ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
|.|+||||+|||++++.|++.+.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~ 24 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLK 24 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHH
Confidence 579999999999999999999865
No 299
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.30 E-value=0.0011 Score=63.27 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=21.0
Q ss_pred CeEecCCCCcHHHHHHHHHHHHHh
Q 007723 314 PILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 314 ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
++++||||+|||+++..++.....
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~ 25 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA 25 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 689999999999999999887654
No 300
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.28 E-value=0.0012 Score=63.10 Aligned_cols=25 Identities=44% Similarity=0.520 Sum_probs=22.6
Q ss_pred CeEecCCCCcHHHHHHHHHHHHHhC
Q 007723 314 PILLGESGVGKTAIAEGLAIRIVQA 338 (591)
Q Consensus 314 ilL~GppGvGKT~la~~lA~~l~~~ 338 (591)
++|+|+||+||||+++.||+.+.+.
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHh
Confidence 6899999999999999999998653
No 301
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.27 E-value=0.00025 Score=62.70 Aligned_cols=22 Identities=41% Similarity=0.650 Sum_probs=20.8
Q ss_pred CeEecCCCCcHHHHHHHHHHHH
Q 007723 314 PILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 314 ilL~GppGvGKT~la~~lA~~l 335 (591)
++|.|+||+||||+++.|++.+
T Consensus 2 I~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999988
No 302
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.26 E-value=0.00089 Score=68.14 Aligned_cols=84 Identities=17% Similarity=0.240 Sum_probs=46.8
Q ss_pred cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeeh-hhhh---ccccc--cch---H---HHHHHHHHH
Q 007723 309 RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM-GLLM---AGAKE--RGE---L---EARVTTLIS 376 (591)
Q Consensus 309 ~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~-~~l~---~g~~~--~g~---~---~~~i~~i~~ 376 (591)
+...|++|+||+|+||||+.+.++..+........+.+.++..+|- .++. .+... .|. . ......++.
T Consensus 109 ~~~~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~ 188 (270)
T TIGR02858 109 NRVLNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMM 188 (270)
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHH
Confidence 3346899999999999999999998875432222233445544331 1211 11110 010 0 011223444
Q ss_pred HHHhcCCeEEEEcCcc
Q 007723 377 EIQKSGDVILFIDEVH 392 (591)
Q Consensus 377 ~~~~~~~~ILfIDEi~ 392 (591)
.+....+.++++||+.
T Consensus 189 ~i~~~~P~villDE~~ 204 (270)
T TIGR02858 189 LIRSMSPDVIVVDEIG 204 (270)
T ss_pred HHHhCCCCEEEEeCCC
Confidence 4444678899999963
No 303
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.24 E-value=0.00046 Score=67.93 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=19.6
Q ss_pred CCCCeEecCCCCcHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLA 332 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA 332 (591)
+..++|||+||+|||++|+.++
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcC
Confidence 4568999999999999999886
No 304
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.0024 Score=72.14 Aligned_cols=229 Identities=18% Similarity=0.176 Sum_probs=136.1
Q ss_pred ccccccCCCCccCCcHHHHHHHHHH------HHhcCCCCCeEec----CCCCcHHHHHHHHHHHHHh-C----CCCccc-
Q 007723 281 TARASEELIDPVIGRETEIQRIIQI------LCRRTKNNPILLG----ESGVGKTAIAEGLAIRIVQ-A----EVPVFL- 344 (591)
Q Consensus 281 ~~~~r~~~~~~vvG~~~~i~~l~~~------L~~~~~~~ilL~G----ppGvGKT~la~~lA~~l~~-~----~~p~~~- 344 (591)
.+..++..|.++.+++......... ++.....++...| ++|++++...+.+-....- . ..|..+
T Consensus 95 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~iv~~~~~~~~~~~~~~~~~~~ 174 (647)
T COG1067 95 VPAGRPESFSELLGQKAEEKAEYLSYLILLALLGPIEQQIILYGYNALLPGVLYAVAARIVLYEAKILKRSAVSVPKNFV 174 (647)
T ss_pred ccccCCcchHHHHHhhhhHHHHHHhhhhHHHhhchhhhhhhhcccccccchhhHHHHHHHHHhhhhcccchhhhhhhhhh
Confidence 4455677788888887766554333 2333355677887 9999999988655443110 0 111111
Q ss_pred -----cCceEEEe---ehhhhhcc---ccccchHHH--HHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHH
Q 007723 345 -----LSKRIMSL---DMGLLMAG---AKERGELEA--RVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDI 411 (591)
Q Consensus 345 -----~~~~~~~l---d~~~l~~g---~~~~g~~~~--~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~ 411 (591)
...+++.- +.+.|+.. ..+.|.+.. ..+-.-..+-+++++||||||+..|. ...+
T Consensus 175 ~~~~~~~~p~v~a~~~~~~~LlG~Vr~~~~qG~l~~~~~~~i~pGaVHkAngGVLiIdei~lL~------------~~~~ 242 (647)
T COG1067 175 ELSPLDGAPVVFATGAIADQLLGSVRHDPYQGGLGTTGHIRVKPGAVHKANGGVLIIDEIGLLA------------QPLQ 242 (647)
T ss_pred hhccccCCcEEecCCCChhhcceeEEEcCCCCccCCCCcccccCcccccccCcEEEEEhhhhhC------------cHHH
Confidence 11222221 12222211 112221000 00001112235778999999999991 3444
Q ss_pred HHhhcccccC----------------------CcEEEEecCChhHHHhhhcccHHHHccCcc-eeec--CC-CHHHHHHH
Q 007723 412 SNLLKPSLGR----------------------GELQCIASTTQDEHRTQFEKDKALARRFQP-VLIS--EP-SQEDAVRI 465 (591)
Q Consensus 412 ~n~L~~~le~----------------------g~v~lI~att~~e~~~~~~~d~aL~~Rf~~-i~i~--~p-~~~e~~~i 465 (591)
+..|+.++++ -.+.+|+..+...|......++.+..-|.. +.+. .| +.+.+.+.
T Consensus 243 w~~LKa~~~k~~~~~~~~~~s~~~~v~~e~vP~d~klI~~Gn~~~l~~l~~~~~~r~~g~~y~ae~~~~m~~~~~nr~k~ 322 (647)
T COG1067 243 WKLLKALLDKEQPIWGSSEPSSGAPVRPESVPLDLKLILAGNREDLEDLHEPDRSRIEGFGYEAEFEDTMPITDANRSKL 322 (647)
T ss_pred HHHHHHHHhccccccCcCccccCcccCCCCcccceEEEeeCCHHHHHhhcccCHHHHhhcceEEEEcCCCCCChHHHHHH
Confidence 5555554443 257899999999887777667766666653 4444 44 56777888
Q ss_pred HHHHHHHHHhh-cCCCCcHHHHHHHHHHhHHhhhcCC----CcHHHHHHHHHHhhHhhhhh
Q 007723 466 LLGLREKYEAH-HNCKFTLEAINAAVHLSARYISDRY----LPDKAIDLVDEAGSRAHIEL 521 (591)
Q Consensus 466 L~~~~~~~~~~-~~i~i~~~al~~l~~~s~r~i~~~~----lp~~ai~lld~a~a~~~~~~ 521 (591)
++.+.+..... .-..++.+|++.+++.+.|+..++. -+.....++..|+-.+...+
T Consensus 323 ~~~~~q~v~~d~~ip~~~~~Av~~li~~a~R~Ag~~~~Ltl~~rdl~~lv~~A~~ia~~~~ 383 (647)
T COG1067 323 VQFYVQELARDGNIPHLDKDAVEELIREAARRAGDQNKLTLRLRDLGNLVREAGDIAVSEG 383 (647)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhccccceeccCHHHHHHHHHHhhHHHhcCC
Confidence 88888877776 4458999999999999999875543 25677888887775555543
No 305
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.20 E-value=0.0089 Score=56.07 Aligned_cols=25 Identities=40% Similarity=0.551 Sum_probs=23.0
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
+.+++|+|+||+|||++++.||+.+
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999999988
No 306
>PRK13695 putative NTPase; Provisional
Probab=97.18 E-value=0.0028 Score=60.04 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=21.7
Q ss_pred CCeEecCCCCcHHHHHHHHHHHHHh
Q 007723 313 NPILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
.++|+|++|+||||+++.++..+..
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~ 26 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKE 26 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4689999999999999999887653
No 307
>PRK00625 shikimate kinase; Provisional
Probab=97.17 E-value=0.0031 Score=59.92 Aligned_cols=23 Identities=35% Similarity=0.416 Sum_probs=21.9
Q ss_pred CCeEecCCCCcHHHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l 335 (591)
+++|+|.||+||||+++.||+.+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999987
No 308
>PRK08118 topology modulation protein; Reviewed
Probab=97.13 E-value=0.00087 Score=63.30 Aligned_cols=23 Identities=35% Similarity=0.661 Sum_probs=21.6
Q ss_pred CCeEecCCCCcHHHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l 335 (591)
.++++||||+||||+|+.|+..+
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l 25 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKL 25 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999987
No 309
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=97.10 E-value=0.00079 Score=71.96 Aligned_cols=44 Identities=23% Similarity=0.331 Sum_probs=32.9
Q ss_pred CccCCcHHHHHHHHHHHHhc------------CCCCCeEecCCCCcHHHHHHHHHH
Q 007723 290 DPVIGRETEIQRIIQILCRR------------TKNNPILLGESGVGKTAIAEGLAI 333 (591)
Q Consensus 290 ~~vvG~~~~i~~l~~~L~~~------------~~~~ilL~GppGvGKT~la~~lA~ 333 (591)
..+.|.++..+.+.=+|..+ ..-|+||.|.|||.|+.|.+-+-+
T Consensus 331 PSIfG~~DiKkAiaClLFgGsrK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEk 386 (729)
T KOG0481|consen 331 PSIFGHEDIKKAIACLLFGGSRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEK 386 (729)
T ss_pred chhcCchhHHHHHHHHhhcCccccCCCcceeccceeEEEecCCchhHHHHHHHHHh
Confidence 35789887777766555442 224899999999999999987654
No 310
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.10 E-value=0.0017 Score=66.18 Aligned_cols=117 Identities=17% Similarity=0.282 Sum_probs=63.6
Q ss_pred CCCccCCcHHHHHHHHHHHHh--cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEee-hhhhhcc----
Q 007723 288 LIDPVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD-MGLLMAG---- 360 (591)
Q Consensus 288 ~~~~vvG~~~~i~~l~~~L~~--~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld-~~~l~~g---- 360 (591)
+++++.-.....+.+.+.|.. +...++++.|++|+||||++.++...+... ..+++.+. ..++...
T Consensus 102 sle~l~~~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~-------~~~iv~iEd~~E~~l~~~~~ 174 (270)
T PF00437_consen 102 SLEDLGESGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPE-------DERIVTIEDPPELRLPGPNQ 174 (270)
T ss_dssp CHCCCCHTHHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTT-------TSEEEEEESSS-S--SCSSE
T ss_pred cHhhccCchhhHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhcccc-------ccceEEeccccceeecccce
Confidence 455555444333444444443 356789999999999999999999988543 12222221 1111100
Q ss_pred ----c-cccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCCcEEEEecCC
Q 007723 361 ----A-KERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTT 431 (591)
Q Consensus 361 ----~-~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g~v~lI~att 431 (591)
. .....+. .++..+....+.+++|+|+-.- +...+ ...+..|+...++|..
T Consensus 175 ~~~~~~~~~~~~~----~~l~~~LR~~pD~iiigEiR~~---------------e~~~~-~~a~~tGh~~~~tT~H 230 (270)
T PF00437_consen 175 IQIQTRRDEISYE----DLLKSALRQDPDVIIIGEIRDP---------------EAAEA-IQAANTGHLGSLTTLH 230 (270)
T ss_dssp EEEEEETTTBSHH----HHHHHHTTS--SEEEESCE-SC---------------HHHHH-HHHHHTT-EEEEEEEE
T ss_pred EEEEeecCcccHH----HHHHHHhcCCCCcccccccCCH---------------hHHHH-HHhhccCCceeeeeee
Confidence 0 1122333 3444444566789999999643 33444 4556677766555543
No 311
>PRK14974 cell division protein FtsY; Provisional
Probab=97.09 E-value=0.0027 Score=66.58 Aligned_cols=28 Identities=25% Similarity=0.336 Sum_probs=23.4
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHHHhC
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRIVQA 338 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l~~~ 338 (591)
+.-++|+|++|+||||++..+|..+...
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~ 167 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKN 167 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 3456799999999999999999887553
No 312
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.06 E-value=0.0023 Score=56.66 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=22.4
Q ss_pred CCCeEecCCCCcHHHHHHHHHHHHHh
Q 007723 312 NNPILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
++++++||+|+|||+++..++..+..
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~ 26 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLD 26 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHh
Confidence 36899999999999999998887754
No 313
>PRK13946 shikimate kinase; Provisional
Probab=96.99 E-value=0.02 Score=54.85 Aligned_cols=26 Identities=31% Similarity=0.525 Sum_probs=23.8
Q ss_pred CCCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 310 TKNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 310 ~~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
.+.+|+|+|.+|+|||++++.||+.+
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 45679999999999999999999988
No 314
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.98 E-value=0.0026 Score=61.85 Aligned_cols=35 Identities=29% Similarity=0.398 Sum_probs=23.7
Q ss_pred HHHHHHHhcCCCCCeEecCCCCcHHHHHHHHHHHHHh
Q 007723 301 RIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 301 ~l~~~L~~~~~~~ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
..++.|. ....+++.||+|||||.||-+.|..+..
T Consensus 11 ~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~v~ 45 (205)
T PF02562_consen 11 FALDALL--NNDLVIVNGPAGTGKTFLALAAALELVK 45 (205)
T ss_dssp HHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHHHH
T ss_pred HHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHHHH
Confidence 3444444 3456788999999999999999976644
No 315
>COG3899 Predicted ATPase [General function prediction only]
Probab=96.97 E-value=0.0055 Score=72.18 Aligned_cols=48 Identities=35% Similarity=0.613 Sum_probs=40.1
Q ss_pred ccCCcHHHHHHHHHHHHhcCC---CCCeEecCCCCcHHHHHHHHHHHHHhC
Q 007723 291 PVIGRETEIQRIIQILCRRTK---NNPILLGESGVGKTAIAEGLAIRIVQA 338 (591)
Q Consensus 291 ~vvG~~~~i~~l~~~L~~~~~---~~ilL~GppGvGKT~la~~lA~~l~~~ 338 (591)
+++||+.++..|.+.+.+-.+ .-+++.|++|.|||.+++.+.+.+.+.
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~ 51 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQ 51 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhcc
Confidence 479999999999999887332 345788999999999999999988654
No 316
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.97 E-value=0.00054 Score=72.70 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=21.1
Q ss_pred CCeEecCCCCcHHHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l 335 (591)
-+++.|.||||||.||-.++..+
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 46788999999999999999998
No 317
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.95 E-value=0.011 Score=64.22 Aligned_cols=28 Identities=32% Similarity=0.383 Sum_probs=24.1
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHHHhC
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRIVQA 338 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l~~~ 338 (591)
+..++|+|++|+||||++..||..+...
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~ 122 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKK 122 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 4567899999999999999999988653
No 318
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.93 E-value=0.0039 Score=66.13 Aligned_cols=27 Identities=41% Similarity=0.508 Sum_probs=23.5
Q ss_pred CCCCCeEecCCCCcHHHHHHHHHHHHH
Q 007723 310 TKNNPILLGESGVGKTAIAEGLAIRIV 336 (591)
Q Consensus 310 ~~~~ilL~GppGvGKT~la~~lA~~l~ 336 (591)
.+..++|+||+|+||||++..|+..+.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~ 162 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCV 162 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 356788999999999999999998764
No 319
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.93 E-value=0.0028 Score=58.89 Aligned_cols=26 Identities=27% Similarity=0.318 Sum_probs=22.7
Q ss_pred CCCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 310 TKNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 310 ~~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
.+..+.|+||+||||++|.+.+|..+
T Consensus 28 ~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 28 AGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred CCceEEEeCCCCccHHHHHHHHHhcc
Confidence 34567899999999999999999875
No 320
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.93 E-value=0.0021 Score=58.43 Aligned_cols=22 Identities=45% Similarity=0.684 Sum_probs=20.3
Q ss_pred CeEecCCCCcHHHHHHHHHHHH
Q 007723 314 PILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 314 ilL~GppGvGKT~la~~lA~~l 335 (591)
++++|+||+||||+|+.++..+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHC
Confidence 5799999999999999999876
No 321
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.90 E-value=0.0027 Score=58.95 Aligned_cols=40 Identities=35% Similarity=0.414 Sum_probs=32.9
Q ss_pred CeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhcc
Q 007723 314 PILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAG 360 (591)
Q Consensus 314 ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g 360 (591)
+.|+|.||+||||||++|.+.+... +..++.+|...+..+
T Consensus 5 IwltGlsGsGKtTlA~~L~~~L~~~-------g~~~~~LDgD~lR~~ 44 (156)
T PF01583_consen 5 IWLTGLSGSGKTTLARALERRLFAR-------GIKVYLLDGDNLRHG 44 (156)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHT-------TS-EEEEEHHHHCTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc-------CCcEEEecCcchhhc
Confidence 5789999999999999999999653 677888998877644
No 322
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.89 E-value=0.0023 Score=65.08 Aligned_cols=40 Identities=15% Similarity=0.225 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhcCCCCCeEecCCCCcHHHHHHHHHHHHH
Q 007723 296 ETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIV 336 (591)
Q Consensus 296 ~~~i~~l~~~L~~~~~~~ilL~GppGvGKT~la~~lA~~l~ 336 (591)
+..++.+..++. .....++|.||+|+||||+++++...+.
T Consensus 66 ~~~~~~l~~~~~-~~~GlilisG~tGSGKTT~l~all~~i~ 105 (264)
T cd01129 66 PENLEIFRKLLE-KPHGIILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred HHHHHHHHHHHh-cCCCEEEEECCCCCcHHHHHHHHHhhhC
Confidence 334455555543 4455789999999999999999988774
No 323
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.88 E-value=0.0021 Score=68.32 Aligned_cols=29 Identities=17% Similarity=0.312 Sum_probs=24.8
Q ss_pred cCCCCCeEecCCCCcHHHHHHHHHHHHHh
Q 007723 309 RTKNNPILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 309 ~~~~~ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
..+..++|+||+|+|||++++.+++.+..
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~~ 194 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAITR 194 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhhcc
Confidence 34566899999999999999999998754
No 324
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.87 E-value=0.0012 Score=70.24 Aligned_cols=78 Identities=15% Similarity=0.290 Sum_probs=46.7
Q ss_pred CCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhh---------cccccc---chHHHHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM---------AGAKER---GELEARVTTLISEIQ 379 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~---------~g~~~~---g~~~~~i~~i~~~~~ 379 (591)
.-++|+|+||+|||+++..++..+... +.++++++..... .|.... -..+..+..+++.+.
T Consensus 83 slvLI~G~pG~GKStLllq~a~~~a~~-------g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~ 155 (372)
T cd01121 83 SVILIGGDPGIGKSTLLLQVAARLAKR-------GGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIE 155 (372)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhc-------CCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHH
Confidence 446889999999999999999887543 2344444322110 000000 000112344555555
Q ss_pred hcCCeEEEEcCcchhhc
Q 007723 380 KSGDVILFIDEVHTLIG 396 (591)
Q Consensus 380 ~~~~~ILfIDEi~~L~~ 396 (591)
..++.+|+||+++.+..
T Consensus 156 ~~~~~lVVIDSIq~l~~ 172 (372)
T cd01121 156 ELKPDLVIIDSIQTVYS 172 (372)
T ss_pred hcCCcEEEEcchHHhhc
Confidence 56788999999999854
No 325
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=96.86 E-value=0.012 Score=55.25 Aligned_cols=25 Identities=36% Similarity=0.554 Sum_probs=23.3
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
..+++|+|++|+||||+.+.||+.+
T Consensus 2 ~~~IvLiG~mGaGKSTIGr~LAk~L 26 (172)
T COG0703 2 NMNIVLIGFMGAGKSTIGRALAKAL 26 (172)
T ss_pred CccEEEEcCCCCCHhHHHHHHHHHc
Confidence 3579999999999999999999998
No 326
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.86 E-value=0.0032 Score=61.19 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=21.9
Q ss_pred CCeEecCCCCcHHHHHHHHHHHHHh
Q 007723 313 NPILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
-++|+||+|+||||++++++..+..
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~ 27 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINK 27 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 4689999999999999999988753
No 327
>PRK07261 topology modulation protein; Provisional
Probab=96.86 E-value=0.0019 Score=61.16 Aligned_cols=23 Identities=30% Similarity=0.497 Sum_probs=20.8
Q ss_pred CCeEecCCCCcHHHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l 335 (591)
.++++|+||+||||+++.|+..+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999876
No 328
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.85 E-value=0.004 Score=60.42 Aligned_cols=25 Identities=40% Similarity=0.508 Sum_probs=21.9
Q ss_pred CCeEecCCCCcHHHHHHHHHHHHHh
Q 007723 313 NPILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
-++|+||+||||||.+-.||..+..
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~ 27 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKL 27 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCchHhHHHHHHHHHhh
Confidence 3679999999999999999988854
No 329
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.82 E-value=0.0067 Score=60.39 Aligned_cols=26 Identities=15% Similarity=0.342 Sum_probs=21.8
Q ss_pred CCCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 310 TKNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 310 ~~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
.+..++++|+||+|||+++..++...
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~ 49 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGA 49 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHH
Confidence 44567889999999999999997664
No 330
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=96.81 E-value=0.0068 Score=62.95 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=20.1
Q ss_pred CCeEecCCCCcHHHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l 335 (591)
-++|+|+.|+|||++.+.|...+
T Consensus 78 ~~~l~G~g~nGKStl~~~l~~l~ 100 (304)
T TIGR01613 78 LFFLYGNGGNGKSTFQNLLSNLL 100 (304)
T ss_pred EEEEECCCCCcHHHHHHHHHHHh
Confidence 45799999999999999887766
No 331
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.81 E-value=0.0063 Score=60.58 Aligned_cols=27 Identities=19% Similarity=0.373 Sum_probs=20.8
Q ss_pred CCCCCeEecCCCCcHHHHHHHHHHHHH
Q 007723 310 TKNNPILLGESGVGKTAIAEGLAIRIV 336 (591)
Q Consensus 310 ~~~~ilL~GppGvGKT~la~~lA~~l~ 336 (591)
....++++|+||+|||+++..++....
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~ 49 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFL 49 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345678999999999999866655553
No 332
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.81 E-value=0.011 Score=70.99 Aligned_cols=149 Identities=15% Similarity=0.271 Sum_probs=91.5
Q ss_pred CCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEee------hhhhhcc--ccccchHHHHHHHHHHHHHhc
Q 007723 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD------MGLLMAG--AKERGELEARVTTLISEIQKS 381 (591)
Q Consensus 310 ~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld------~~~l~~g--~~~~g~~~~~i~~i~~~~~~~ 381 (591)
+..+++|.||.-+|||+++..+|+.. +.+++.++ +.+.+.. +...|...-+-.-+++.++ .
T Consensus 887 ~~fP~LiQGpTSSGKTSMI~yla~~t----------ghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR-~ 955 (4600)
T COG5271 887 SNFPLLIQGPTSSGKTSMILYLARET----------GHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALR-R 955 (4600)
T ss_pred cCCcEEEecCCCCCcchHHHHHHHHh----------CccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHh-c
Confidence 45677889999999999999999987 55566553 2222211 1112222111122333333 3
Q ss_pred CCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccC----------------CcEEEEecCChh-HHHhhhcccHH
Q 007723 382 GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR----------------GELQCIASTTQD-EHRTQFEKDKA 444 (591)
Q Consensus 382 ~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~----------------g~v~lI~att~~-e~~~~~~~d~a 444 (591)
+.-+++||+... ..++..+|..+|.. .++++.++-||+ -|..--.+..+
T Consensus 956 -GyWIVLDELNLA-------------pTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrA 1021 (4600)
T COG5271 956 -GYWIVLDELNLA-------------PTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRA 1021 (4600)
T ss_pred -CcEEEeeccccC-------------cHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHH
Confidence 345678999765 44566666655542 245666666654 23222235689
Q ss_pred HHccCcceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHH
Q 007723 445 LARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHL 492 (591)
Q Consensus 445 L~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~ 492 (591)
+++||..+++.....+++..||.+ +++|.+.-...+++.
T Consensus 1022 FRNRFlE~hFddipedEle~ILh~---------rc~iapSyakKiVeV 1060 (4600)
T COG5271 1022 FRNRFLEMHFDDIPEDELEEILHG---------RCEIAPSYAKKIVEV 1060 (4600)
T ss_pred HHhhhHhhhcccCcHHHHHHHHhc---------cCccCHHHHHHHHHH
Confidence 999999899999999999999854 455555555555543
No 333
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.81 E-value=0.0037 Score=61.00 Aligned_cols=78 Identities=19% Similarity=0.255 Sum_probs=46.0
Q ss_pred CCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhh-----c--cc--------------cccchHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM-----A--GA--------------KERGELEAR 370 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~-----~--g~--------------~~~g~~~~~ 370 (591)
.-+.++||||+|||+++..++...... +.++++++...+. . .. ....+....
T Consensus 13 ~i~~i~G~~GsGKT~l~~~~~~~~~~~-------g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 85 (209)
T TIGR02237 13 TITQIYGPPGSGKTNICMILAVNAARQ-------GKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVA 85 (209)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhC-------CCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHH
Confidence 445799999999999999998876432 3455555554310 0 00 000111222
Q ss_pred HHHHHHHHHhcCCeEEEEcCcchhhc
Q 007723 371 VTTLISEIQKSGDVILFIDEVHTLIG 396 (591)
Q Consensus 371 i~~i~~~~~~~~~~ILfIDEi~~L~~ 396 (591)
+..+...+.+....+|+||-+..+..
T Consensus 86 ~~~l~~~~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 86 IQKTSKFIDRDSASLVVVDSFTALYR 111 (209)
T ss_pred HHHHHHHHhhcCccEEEEeCcHHHhH
Confidence 33343434444677999999998753
No 334
>PRK06217 hypothetical protein; Validated
Probab=96.78 E-value=0.0029 Score=60.54 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=21.5
Q ss_pred CCeEecCCCCcHHHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l 335 (591)
.|+|+|.||+||||+++.|++.+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48899999999999999999987
No 335
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.77 E-value=0.0099 Score=67.71 Aligned_cols=129 Identities=18% Similarity=0.213 Sum_probs=71.1
Q ss_pred cccCCCCccCCcHHHHHHHHHHHHhc-CCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhh------
Q 007723 284 ASEELIDPVIGRETEIQRIIQILCRR-TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGL------ 356 (591)
Q Consensus 284 ~r~~~~~~vvG~~~~i~~l~~~L~~~-~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~------ 356 (591)
.+|....+.|-|... ++.|.+. ..+-++|.-|.|.||||++-.++.....+. +...+.+|-++
T Consensus 13 ~~P~~~~~~v~R~rL----~~~L~~~~~~RL~li~APAGfGKttl~aq~~~~~~~~~------~v~Wlslde~dndp~rF 82 (894)
T COG2909 13 VRPVRPDNYVVRPRL----LDRLRRANDYRLILISAPAGFGKTTLLAQWRELAADGA------AVAWLSLDESDNDPARF 82 (894)
T ss_pred CCCCCcccccccHHH----HHHHhcCCCceEEEEeCCCCCcHHHHHHHHHHhcCccc------ceeEeecCCccCCHHHH
Confidence 345555566666644 4444443 345578999999999999999987443221 22223332110
Q ss_pred ---hhc-----------------cccccchHHHHHHHHHHHHHh-cCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhh
Q 007723 357 ---LMA-----------------GAKERGELEARVTTLISEIQK-SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLL 415 (591)
Q Consensus 357 ---l~~-----------------g~~~~g~~~~~i~~i~~~~~~-~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L 415 (591)
++. +......++..+..++.++.. .++.+|||||.|.+.+. .-....+.|
T Consensus 83 ~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~---------~l~~~l~fL 153 (894)
T COG2909 83 LSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDP---------ALHEALRFL 153 (894)
T ss_pred HHHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcc---------cHHHHHHHH
Confidence 110 001112344456677777665 46789999999999311 122333444
Q ss_pred cccccCCcEEEEecCCh
Q 007723 416 KPSLGRGELQCIASTTQ 432 (591)
Q Consensus 416 ~~~le~g~v~lI~att~ 432 (591)
.... ..++.+|.+|..
T Consensus 154 l~~~-P~~l~lvv~SR~ 169 (894)
T COG2909 154 LKHA-PENLTLVVTSRS 169 (894)
T ss_pred HHhC-CCCeEEEEEecc
Confidence 4433 345666665543
No 336
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.77 E-value=0.0044 Score=61.29 Aligned_cols=27 Identities=22% Similarity=0.258 Sum_probs=21.7
Q ss_pred cCCCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 309 RTKNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 309 ~~~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
+.+..+++.||||+|||+++..++..-
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~~ 43 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYNG 43 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHh
Confidence 345667899999999999999876544
No 337
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.77 E-value=0.002 Score=70.39 Aligned_cols=79 Identities=16% Similarity=0.329 Sum_probs=47.3
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhccc----cccc--------hHHHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGA----KERG--------ELEARVTTLISEI 378 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~----~~~g--------~~~~~i~~i~~~~ 378 (591)
..-++|+|+||+|||+|+..++..+... +.++++++..+..... ...| ..+..+..+++.+
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~-------g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i 152 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAA-------GGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATI 152 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhc-------CCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHH
Confidence 3456899999999999999999877532 3444555432211000 0000 0001134455555
Q ss_pred HhcCCeEEEEcCcchhhc
Q 007723 379 QKSGDVILFIDEVHTLIG 396 (591)
Q Consensus 379 ~~~~~~ILfIDEi~~L~~ 396 (591)
.+.+..+++||.++.+..
T Consensus 153 ~~~~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 153 EEEKPDLVVIDSIQTMYS 170 (446)
T ss_pred HhhCCCEEEEechhhhcc
Confidence 556778999999998864
No 338
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.77 E-value=0.0041 Score=65.61 Aligned_cols=41 Identities=12% Similarity=0.293 Sum_probs=31.6
Q ss_pred HHHHHHHHHHh-cCCCCCeEecCCCCcHHHHHHHHHHHHHhC
Q 007723 298 EIQRIIQILCR-RTKNNPILLGESGVGKTAIAEGLAIRIVQA 338 (591)
Q Consensus 298 ~i~~l~~~L~~-~~~~~ilL~GppGvGKT~la~~lA~~l~~~ 338 (591)
...++++.+.. ..+...+|+||||||||+|++.+++.+...
T Consensus 119 ~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~ 160 (380)
T PRK12608 119 LSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAAN 160 (380)
T ss_pred hhHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 33446666554 455678999999999999999999988653
No 339
>PRK13947 shikimate kinase; Provisional
Probab=96.73 E-value=0.0013 Score=62.01 Aligned_cols=24 Identities=33% Similarity=0.594 Sum_probs=22.5
Q ss_pred CCCeEecCCCCcHHHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~l 335 (591)
.|++|+|+||+|||++++.||+.+
T Consensus 2 ~~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 2 KNIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHh
Confidence 368999999999999999999988
No 340
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.72 E-value=0.0077 Score=64.40 Aligned_cols=26 Identities=42% Similarity=0.443 Sum_probs=22.5
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRIV 336 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l~ 336 (591)
+..++|+||+|+||||.+..+|..+.
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34578999999999999999998774
No 341
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=96.70 E-value=0.003 Score=61.34 Aligned_cols=99 Identities=28% Similarity=0.397 Sum_probs=60.7
Q ss_pred CCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcc
Q 007723 313 NPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVH 392 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~ 392 (591)
.++|+|+-|+|||++.+.|...... |. +. .....++... + ....|+.|||+.
T Consensus 54 ~lvl~G~QG~GKStf~~~L~~~~~~---------------d~--~~--~~~~kd~~~~---l------~~~~iveldEl~ 105 (198)
T PF05272_consen 54 VLVLVGKQGIGKSTFFRKLGPEYFS---------------DS--IN--DFDDKDFLEQ---L------QGKWIVELDELD 105 (198)
T ss_pred eeeEecCCcccHHHHHHHHhHHhcc---------------Cc--cc--cCCCcHHHHH---H------HHhHheeHHHHh
Confidence 4689999999999999998554211 10 00 0011222111 1 224689999999
Q ss_pred hhhcCCCCCCCCCCccHHHHHhhcccccC-----------------CcEEEEecCChhHHHhhhcccHHHHccCcceeec
Q 007723 393 TLIGSGTVGRGNKGTGLDISNLLKPSLGR-----------------GELQCIASTTQDEHRTQFEKDKALARRFQPVLIS 455 (591)
Q Consensus 393 ~L~~~~~~~~~~~~~~~~~~n~L~~~le~-----------------g~v~lI~att~~e~~~~~~~d~aL~~Rf~~i~i~ 455 (591)
.+. ..-.+.||.++.+ ....+||+||..+ +-.|++=.|||-+|.+.
T Consensus 106 ~~~-------------k~~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~----~L~D~TGnRRf~~v~v~ 168 (198)
T PF05272_consen 106 GLS-------------KKDVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDD----FLKDPTGNRRFWPVEVS 168 (198)
T ss_pred hcc-------------hhhHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcc----eeeCCCCCeEEEEEEEc
Confidence 883 2223555554431 1357889998865 34577777899888777
Q ss_pred C
Q 007723 456 E 456 (591)
Q Consensus 456 ~ 456 (591)
.
T Consensus 169 ~ 169 (198)
T PF05272_consen 169 K 169 (198)
T ss_pred C
Confidence 6
No 342
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.69 E-value=0.0015 Score=62.24 Aligned_cols=23 Identities=35% Similarity=0.689 Sum_probs=21.2
Q ss_pred CCeEecCCCCcHHHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l 335 (591)
.++|.||||+||||+|+.|++.+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999975
No 343
>PRK13949 shikimate kinase; Provisional
Probab=96.69 E-value=0.0028 Score=60.00 Aligned_cols=24 Identities=33% Similarity=0.536 Sum_probs=22.3
Q ss_pred CCCeEecCCCCcHHHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~l 335 (591)
.+++|+|+||+||||+++.||+.+
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 368999999999999999999988
No 344
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.67 E-value=0.0022 Score=68.44 Aligned_cols=43 Identities=14% Similarity=0.244 Sum_probs=34.7
Q ss_pred cHHHHHHHHHHHHhcCCCCCeEecCCCCcHHHHHHHHHHHHHh
Q 007723 295 RETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 295 ~~~~i~~l~~~L~~~~~~~ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
|...+..+++.+....+.++++.|+.|||||+++++|...+..
T Consensus 6 Q~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~ 48 (364)
T PF05970_consen 6 QRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRS 48 (364)
T ss_pred HHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhcc
Confidence 4456666777777677788899999999999999999988743
No 345
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.62 E-value=0.005 Score=57.51 Aligned_cols=22 Identities=45% Similarity=0.730 Sum_probs=20.5
Q ss_pred CeEecCCCCcHHHHHHHHHHHH
Q 007723 314 PILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 314 ilL~GppGvGKT~la~~lA~~l 335 (591)
++|+||+|+||||+++.|++.+
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999987
No 346
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=96.61 E-value=0.0041 Score=60.45 Aligned_cols=24 Identities=17% Similarity=0.416 Sum_probs=21.0
Q ss_pred CCCeEecCCCCcHHHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~l 335 (591)
.-++|+||+|+||||+.+.++..+
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH
Confidence 456899999999999999998655
No 347
>PRK05574 holA DNA polymerase III subunit delta; Reviewed
Probab=96.60 E-value=0.16 Score=53.32 Aligned_cols=164 Identities=9% Similarity=-0.019 Sum_probs=92.5
Q ss_pred cCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhccccc---CCcEEEEecCChhHHH-hhhcccHHHHccCcceeecC
Q 007723 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG---RGELQCIASTTQDEHR-TQFEKDKALARRFQPVLISE 456 (591)
Q Consensus 381 ~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le---~g~v~lI~att~~e~~-~~~~~d~aL~~Rf~~i~i~~ 456 (591)
+++.+++|++++.+.+.. ..+....|...+. ...+++|...+....+ +....-..+..++..+.+..
T Consensus 75 ~~~klvii~~~~~l~~~~---------~~~~l~~l~~~l~~~~~~~~~li~~~~~~~~~~k~~k~~k~~~~~~~~~~~~~ 145 (340)
T PRK05574 75 SDRKLVELRLPEFLTGAK---------GEKALKRLEAYLNPLPHPDLLLIVRLPKLDKAKKKSAWFKALKKKAVVVEAQP 145 (340)
T ss_pred ccCeEEEEECCCCCCchh---------HHHHHHHHHHhccCCCCCcEEEEEECCcCCHHHHhhHHHHHHHhCceEEEcCC
Confidence 456789999999883221 1122223333331 2234545443321111 11011346667787889999
Q ss_pred CCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhhhcCCCcHHHHHHHHHHhhHhhhhhhccchhhhhhhhcCC
Q 007723 457 PSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKP 536 (591)
Q Consensus 457 p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i~~~~lp~~ai~lld~a~a~~~~~~~~~~~~~~i~~l~~~ 536 (591)
++..+....+...+... |+.|++++++++++.+...+.. +..-++.-+..+ +......+.|..+...
T Consensus 146 ~~~~~~~~~i~~~~~~~----g~~i~~~a~~~L~~~~~~d~~~------l~~El~KL~l~~---~~~~It~~~I~~~i~~ 212 (340)
T PRK05574 146 PKEAELPQWIQQRLKQQ----GLQIDAAALQLLAERVEGNLLA------LAQELEKLALLY---PDGKITLEDVEEAVPD 212 (340)
T ss_pred CCHHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHhCchHHH------HHHHHHHHHhhc---CCCCCCHHHHHHHHhh
Confidence 99999888887766654 9999999999999987644322 333444433211 1111111233333322
Q ss_pred -hHHHHHHHHHHhhcchHHHHhhchhhHhhh
Q 007723 537 -PDDYWQEIRTVQAMHEVVQGSRLKYDDVVA 566 (591)
Q Consensus 537 -~~~~~~~~~~~~~~~d~~~a~~~~~~~~~~ 566 (591)
.+...+....++..+|...|.+..+.....
T Consensus 213 ~~~~~~f~l~dai~~~~~~~a~~~l~~l~~~ 243 (340)
T PRK05574 213 SARFDVFDLVDAILAGKIKRALRILDGLRLE 243 (340)
T ss_pred hhcCCHHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 333455666788888888887776665543
No 348
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.59 E-value=0.011 Score=59.56 Aligned_cols=24 Identities=38% Similarity=0.601 Sum_probs=21.8
Q ss_pred CeEecCCCCcHHHHHHHHHHHHHh
Q 007723 314 PILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 314 ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
++|+|.||+||||+|+.|++.+..
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~ 25 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSE 25 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 689999999999999999998854
No 349
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.58 E-value=0.002 Score=59.31 Aligned_cols=23 Identities=39% Similarity=0.580 Sum_probs=21.6
Q ss_pred CCeEecCCCCcHHHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l 335 (591)
+++|+|+||+|||++++.|+..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999987
No 350
>PRK13948 shikimate kinase; Provisional
Probab=96.57 E-value=0.034 Score=53.22 Aligned_cols=26 Identities=27% Similarity=0.238 Sum_probs=23.9
Q ss_pred CCCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 310 TKNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 310 ~~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
...+++|+|.+|+||||+++.|++.+
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~l 34 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRAL 34 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999999987
No 351
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.57 E-value=0.0032 Score=60.43 Aligned_cols=27 Identities=30% Similarity=0.478 Sum_probs=23.8
Q ss_pred CCCCCeEecCCCCcHHHHHHHHHHHHH
Q 007723 310 TKNNPILLGESGVGKTAIAEGLAIRIV 336 (591)
Q Consensus 310 ~~~~ilL~GppGvGKT~la~~lA~~l~ 336 (591)
.+.+++|+||+|+||||+++++...+.
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 356899999999999999999998763
No 352
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=96.57 E-value=0.009 Score=57.74 Aligned_cols=60 Identities=17% Similarity=0.127 Sum_probs=29.3
Q ss_pred CCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCCcEEEEecCChhHHHhhhcccHHHHccCc
Q 007723 382 GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQ 450 (591)
Q Consensus 382 ~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g~v~lI~att~~e~~~~~~~d~aL~~Rf~ 450 (591)
.+.+++|||++.++..+.... ....+..+.|... ....+-+|.+|-.. -.+|..+++.++
T Consensus 79 ~~~liviDEa~~~~~~r~~~~---~~~~~~~~~l~~h-Rh~g~diiliTQ~~-----~~id~~ir~lve 138 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKG---KKVPEIIEFLAQH-RHYGWDIILITQSP-----SQIDKFIRDLVE 138 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T-------HHHHGGGGC-CCTT-EEEEEES-G-----GGB-HHHHCCEE
T ss_pred CCcEEEEECChhhcCCCcccc---ccchHHHHHHHHh-CcCCcEEEEEeCCH-----HHHhHHHHHHHh
Confidence 578999999999987765410 0123344444332 22334555555442 247788877655
No 353
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.57 E-value=0.013 Score=57.55 Aligned_cols=83 Identities=13% Similarity=0.144 Sum_probs=43.1
Q ss_pred CCCeEecCCCCcHHHHHHHHHHH--HHhCCCCccccCceEEEee--hhhhhcc---ccccchHHHHHHHHHHHHHh-cCC
Q 007723 312 NNPILLGESGVGKTAIAEGLAIR--IVQAEVPVFLLSKRIMSLD--MGLLMAG---AKERGELEARVTTLISEIQK-SGD 383 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~--l~~~~~p~~~~~~~~~~ld--~~~l~~g---~~~~g~~~~~i~~i~~~~~~-~~~ 383 (591)
+-++|+||.|+|||++.+.++.. +...+.+.......+-.+| ...+... ......|...++.+...+.. ..+
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l~~~~~~ 109 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKALRLATRR 109 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeeeeeeeeCCccChhhccchHHHHHHHHHHHHHhCCCC
Confidence 55789999999999999999843 2332221111122222111 0111000 01123344445444433322 467
Q ss_pred eEEEEcCcchh
Q 007723 384 VILFIDEVHTL 394 (591)
Q Consensus 384 ~ILfIDEi~~L 394 (591)
.+++|||+..-
T Consensus 110 slvllDE~~~g 120 (213)
T cd03281 110 SLVLIDEFGKG 120 (213)
T ss_pred cEEEeccccCC
Confidence 89999998654
No 354
>PRK03839 putative kinase; Provisional
Probab=96.56 E-value=0.0019 Score=61.53 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=21.4
Q ss_pred CCeEecCCCCcHHHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l 335 (591)
.++|+|+||+||||+++.||+.+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999987
No 355
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.55 E-value=0.0017 Score=66.08 Aligned_cols=73 Identities=21% Similarity=0.236 Sum_probs=37.1
Q ss_pred CeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhcc-ccc-cchHHH----HHHHHHHHHHhcCCeEEE
Q 007723 314 PILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAG-AKE-RGELEA----RVTTLISEIQKSGDVILF 387 (591)
Q Consensus 314 ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g-~~~-~g~~~~----~i~~i~~~~~~~~~~ILf 387 (591)
++|+|-||+|||++++.|+..+... +..+..++-..+... ..| ...-+. .++..++... ....|+|
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~-------~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~l-s~~~iVI 75 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEK-------GKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERAL-SKDTIVI 75 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHT-------T--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHH-TT-SEEE
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhc-------CCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhh-ccCeEEE
Confidence 6899999999999999999998662 445555553333311 112 111222 2333333332 3457899
Q ss_pred EcCcchh
Q 007723 388 IDEVHTL 394 (591)
Q Consensus 388 IDEi~~L 394 (591)
+|+..++
T Consensus 76 ~Dd~nYi 82 (270)
T PF08433_consen 76 LDDNNYI 82 (270)
T ss_dssp E-S---S
T ss_pred EeCCchH
Confidence 9999988
No 356
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.54 E-value=0.054 Score=56.42 Aligned_cols=102 Identities=20% Similarity=0.280 Sum_probs=54.2
Q ss_pred HHHHHHHHHHh--c-CCeEEEEcCcchhhcCCCCCCCCC----CccHHHHHhhccccc------CCcEEE-EecCChhHH
Q 007723 370 RVTTLISEIQK--S-GDVILFIDEVHTLIGSGTVGRGNK----GTGLDISNLLKPSLG------RGELQC-IASTTQDEH 435 (591)
Q Consensus 370 ~i~~i~~~~~~--~-~~~ILfIDEi~~L~~~~~~~~~~~----~~~~~~~n~L~~~le------~g~v~l-I~att~~e~ 435 (591)
.+..+++++.. . .++++.||++..+++...+.+.+. .....+...|+.++. +|.+++ +.+|....-
T Consensus 141 ~~~~l~~EL~~~~~~~PVL~avD~~n~l~~~S~Y~~~~~~~I~~~~L~l~~~f~~~~s~~~~~~nG~~v~~l~~t~~~~~ 220 (309)
T PF10236_consen 141 VFQALIRELKAQSKRPPVLVAVDGFNALFGPSAYRDPDFKPIHPHDLTLVRLFLDLLSGKRDFKNGAVVTALAATSVSNA 220 (309)
T ss_pred HHHHHHHHHHhcccCCceEEEehhhHHhhCCccccCCCCccccHHHhhHHHHHHHHhcCccccCCCeEEEEEeccccccc
Confidence 45566677654 2 478889999999987654432211 112234455555532 344432 444433211
Q ss_pred HhhhcccHHHHcc-------------------C---cceeecCCCHHHHHHHHHHHHH
Q 007723 436 RTQFEKDKALARR-------------------F---QPVLISEPSQEDAVRILLGLRE 471 (591)
Q Consensus 436 ~~~~~~d~aL~~R-------------------f---~~i~i~~p~~~e~~~iL~~~~~ 471 (591)
.....++.+|..+ + .+|.++..+.+|...++.-...
T Consensus 221 ~~~~~l~~~L~~~~~~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~ 278 (309)
T PF10236_consen 221 PKSPTLPVALGGKEGFPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYAD 278 (309)
T ss_pred cCCccchhhhccccCCCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHH
Confidence 1111222333322 2 2688888899998888755433
No 357
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.52 E-value=0.0052 Score=56.74 Aligned_cols=22 Identities=36% Similarity=0.492 Sum_probs=20.2
Q ss_pred CeEecCCCCcHHHHHHHHHHHH
Q 007723 314 PILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 314 ilL~GppGvGKT~la~~lA~~l 335 (591)
+.+.|||||||||+++.||..+
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~ 24 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHL 24 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHh
Confidence 4578999999999999999988
No 358
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.50 E-value=0.0047 Score=58.62 Aligned_cols=24 Identities=38% Similarity=0.430 Sum_probs=21.6
Q ss_pred CCCeEecCCCCcHHHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~l 335 (591)
+.++|.|+||+||||+++.|+..+
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 457899999999999999999876
No 359
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.50 E-value=0.0058 Score=64.62 Aligned_cols=28 Identities=21% Similarity=0.329 Sum_probs=24.3
Q ss_pred cCCCCCeEecCCCCcHHHHHHHHHHHHH
Q 007723 309 RTKNNPILLGESGVGKTAIAEGLAIRIV 336 (591)
Q Consensus 309 ~~~~~ilL~GppGvGKT~la~~lA~~l~ 336 (591)
.....++|+||+|+||||+++++...+.
T Consensus 120 ~~~g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 120 RPRGLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred hcCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 3456789999999999999999998774
No 360
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.49 E-value=0.0076 Score=67.66 Aligned_cols=40 Identities=15% Similarity=0.231 Sum_probs=29.6
Q ss_pred cCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCCcEEEEe
Q 007723 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIA 428 (591)
Q Consensus 381 ~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g~v~lI~ 428 (591)
.++.||++||+-.-+++ +...-++.+|.+.+....+++|+
T Consensus 621 r~P~VLILDEATSALDa--------eSE~lVq~aL~~~~~~rTVlvIA 660 (716)
T KOG0058|consen 621 RNPRVLILDEATSALDA--------ESEYLVQEALDRLMQGRTVLVIA 660 (716)
T ss_pred cCCCEEEEechhhhcch--------hhHHHHHHHHHHhhcCCeEEEEe
Confidence 56889999999877654 22455777888888777777775
No 361
>PRK06547 hypothetical protein; Provisional
Probab=96.48 E-value=0.0031 Score=59.84 Aligned_cols=31 Identities=39% Similarity=0.521 Sum_probs=24.1
Q ss_pred HHHhcCCCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 305 ILCRRTKNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 305 ~L~~~~~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
.+......-+++.|++|+||||+++.|+..+
T Consensus 9 ~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 9 RLCGGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred HhhcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444444556677999999999999999875
No 362
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.48 E-value=0.0065 Score=55.29 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=20.5
Q ss_pred CeEecCCCCcHHHHHHHHHHHH
Q 007723 314 PILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 314 ilL~GppGvGKT~la~~lA~~l 335 (591)
++++|+||+||||+++.|+..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999987
No 363
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.45 E-value=0.0086 Score=59.19 Aligned_cols=38 Identities=26% Similarity=0.430 Sum_probs=28.2
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehh
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMG 355 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~ 355 (591)
+.-++|+|+||+|||+++..++...... +.++++++..
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~~~-------~~~v~yi~~e 60 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAAKN-------GKKVIYIDTE 60 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC-------CCeEEEEECC
Confidence 3445899999999999999999877543 3455555554
No 364
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.44 E-value=0.0027 Score=57.69 Aligned_cols=27 Identities=37% Similarity=0.617 Sum_probs=24.4
Q ss_pred cCCCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 309 RTKNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 309 ~~~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
+.++|+|++|-|||||||++..||...
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae~~ 31 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAEKT 31 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHHHh
Confidence 457899999999999999999999755
No 365
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.43 E-value=0.0069 Score=57.22 Aligned_cols=25 Identities=40% Similarity=0.577 Sum_probs=22.0
Q ss_pred CeEecCCCCcHHHHHHHHHHHHHhC
Q 007723 314 PILLGESGVGKTAIAEGLAIRIVQA 338 (591)
Q Consensus 314 ilL~GppGvGKT~la~~lA~~l~~~ 338 (591)
++++|+||+|||+++..++..+...
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
Confidence 5789999999999999999987543
No 366
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.43 E-value=0.0038 Score=65.58 Aligned_cols=29 Identities=28% Similarity=0.349 Sum_probs=25.4
Q ss_pred cCCCCCeEecCCCCcHHHHHHHHHHHHHh
Q 007723 309 RTKNNPILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 309 ~~~~~ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
+.+.|++++|++|+||||++++|...+..
T Consensus 158 ~~~~nili~G~tgSGKTTll~aL~~~ip~ 186 (332)
T PRK13900 158 ISKKNIIISGGTSTGKTTFTNAALREIPA 186 (332)
T ss_pred HcCCcEEEECCCCCCHHHHHHHHHhhCCC
Confidence 45678999999999999999999988743
No 367
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.43 E-value=0.012 Score=55.11 Aligned_cols=42 Identities=26% Similarity=0.300 Sum_probs=34.1
Q ss_pred CCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhcc
Q 007723 312 NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAG 360 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g 360 (591)
.-+.|+|.+|+||||+|.++.+.+.. .+..++.+|...+-.|
T Consensus 24 ~viW~TGLSGsGKSTiA~ale~~L~~-------~G~~~y~LDGDnvR~g 65 (197)
T COG0529 24 AVIWFTGLSGSGKSTIANALEEKLFA-------KGYHVYLLDGDNVRHG 65 (197)
T ss_pred eEEEeecCCCCCHHHHHHHHHHHHHH-------cCCeEEEecChhHhhc
Confidence 34568999999999999999999954 4788888887766543
No 368
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.42 E-value=0.0021 Score=56.91 Aligned_cols=22 Identities=45% Similarity=0.522 Sum_probs=20.5
Q ss_pred CeEecCCCCcHHHHHHHHHHHH
Q 007723 314 PILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 314 ilL~GppGvGKT~la~~lA~~l 335 (591)
|+|.|+|||||||+++.|++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999999985
No 369
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.42 E-value=0.013 Score=62.49 Aligned_cols=28 Identities=21% Similarity=0.376 Sum_probs=24.1
Q ss_pred CCCCCeEecCCCCcHHHHHHHHHHHHHh
Q 007723 310 TKNNPILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 310 ~~~~ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
....++++||+|+||||+++++...+..
T Consensus 148 ~~GlilI~G~TGSGKTT~l~al~~~i~~ 175 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLAASIYQHCGE 175 (372)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3457889999999999999999998853
No 370
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.42 E-value=0.0062 Score=57.74 Aligned_cols=25 Identities=40% Similarity=0.634 Sum_probs=22.8
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
+.+++|+|++|+||||+++.|+..+
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc
Confidence 4578999999999999999999986
No 371
>PF13245 AAA_19: Part of AAA domain
Probab=96.40 E-value=0.0037 Score=50.86 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=16.0
Q ss_pred CCeEecCCCCcHHH-HHHHHHHHH
Q 007723 313 NPILLGESGVGKTA-IAEGLAIRI 335 (591)
Q Consensus 313 ~ilL~GppGvGKT~-la~~lA~~l 335 (591)
-+++.||||+|||+ +++.++..+
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 34569999999995 555555544
No 372
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.39 E-value=0.11 Score=55.72 Aligned_cols=38 Identities=21% Similarity=0.341 Sum_probs=29.3
Q ss_pred cHHHHHHHHHHHHhcCCCCCeEecCCCCcHHHHH--HHHH
Q 007723 295 RETEIQRIIQILCRRTKNNPILLGESGVGKTAIA--EGLA 332 (591)
Q Consensus 295 ~~~~i~~l~~~L~~~~~~~ilL~GppGvGKT~la--~~lA 332 (591)
|.+.+++|..+|.....--+++.||.|+||+.|+ +.|.
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~ 40 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLK 40 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHh
Confidence 3457888888888655555678899999999999 4443
No 373
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.38 E-value=0.025 Score=52.20 Aligned_cols=23 Identities=39% Similarity=0.523 Sum_probs=21.3
Q ss_pred CeEecCCCCcHHHHHHHHHHHHH
Q 007723 314 PILLGESGVGKTAIAEGLAIRIV 336 (591)
Q Consensus 314 ilL~GppGvGKT~la~~lA~~l~ 336 (591)
++|+|+||+||||+++.|+..+.
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999885
No 374
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.36 E-value=0.0096 Score=69.02 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=22.7
Q ss_pred CCCeEecCCCCcHHHHHHHHHHHHHh
Q 007723 312 NNPILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
+.++|.|+||||||++++++...+..
T Consensus 339 ~~~iitGgpGTGKTt~l~~i~~~~~~ 364 (720)
T TIGR01448 339 KVVILTGGPGTGKTTITRAIIELAEE 364 (720)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46789999999999999999887754
No 375
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.33 E-value=0.0095 Score=55.88 Aligned_cols=26 Identities=31% Similarity=0.382 Sum_probs=22.4
Q ss_pred CCCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 310 TKNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 310 ~~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
.+..+.|+||+|+|||||.+.|+..+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45567899999999999999998765
No 376
>PRK06762 hypothetical protein; Provisional
Probab=96.33 E-value=0.0099 Score=55.70 Aligned_cols=23 Identities=48% Similarity=0.615 Sum_probs=20.9
Q ss_pred CCeEecCCCCcHHHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l 335 (591)
-++|+|+||+||||+|+.|++.+
T Consensus 4 li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 4 LIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999987
No 377
>PHA02624 large T antigen; Provisional
Probab=96.32 E-value=0.0094 Score=66.21 Aligned_cols=27 Identities=22% Similarity=0.215 Sum_probs=24.2
Q ss_pred cCCCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 309 RTKNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 309 ~~~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
+.++.++|+||||||||+++.+|++.+
T Consensus 429 PKk~~il~~GPpnTGKTtf~~sLl~~L 455 (647)
T PHA02624 429 PKRRYWLFKGPVNSGKTTLAAALLDLC 455 (647)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 455678999999999999999999987
No 378
>PRK14532 adenylate kinase; Provisional
Probab=96.30 E-value=0.0031 Score=60.44 Aligned_cols=23 Identities=35% Similarity=0.407 Sum_probs=21.3
Q ss_pred CCeEecCCCCcHHHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l 335 (591)
+++|+||||+||||+++.||+..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999999876
No 379
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=96.25 E-value=0.1 Score=53.80 Aligned_cols=160 Identities=10% Similarity=0.015 Sum_probs=96.8
Q ss_pred cCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhccccc--CCcEEEEecCChhHHHhhhcccHHHH--ccCcceeecC
Q 007723 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG--RGELQCIASTTQDEHRTQFEKDKALA--RRFQPVLISE 456 (591)
Q Consensus 381 ~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le--~g~v~lI~att~~e~~~~~~~d~aL~--~Rf~~i~i~~ 456 (591)
.++.+++|++++.+.+ ....+.|...++ ..+.++|..++..+... .....+. .++..+.+..
T Consensus 45 ~~~kliii~~~~~~~~------------~~~~~~L~~~l~~~~~~~~~i~~~~~~~~~~--~~~k~~~~~~~~~~i~~~~ 110 (302)
T TIGR01128 45 SERRLVELRNPEGKPG------------AKGLKALEEYLANPPPDTLLLIEAPKLDKRK--KLTKWLKALKNAQIVECKT 110 (302)
T ss_pred cCCeEEEEECCCCCCC------------HHHHHHHHHHHhcCCCCEEEEEecCCCCHhH--HHHHHHHHhcCeeEEEecC
Confidence 3567999999998721 122344444443 23444554444322111 1112333 4888899999
Q ss_pred CCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhhhcCCCcHHHHHHHHHHhhHhhhhhhccchhhhhhhhcCC
Q 007723 457 PSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKP 536 (591)
Q Consensus 457 p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i~~~~lp~~ai~lld~a~a~~~~~~~~~~~~~~i~~l~~~ 536 (591)
|+..+....+...+.+. |+.++++++++++..+...+.. +...++..+.... ......+.|..+...
T Consensus 111 ~~~~~~~~~i~~~~~~~----g~~i~~~a~~~l~~~~~~d~~~------l~~el~KL~~~~~---~~~It~e~I~~~~~~ 177 (302)
T TIGR01128 111 PKEQELPRWIQARLKKL----GLRIDPDAVQLLAELVEGNLLA------IAQELEKLALYAP---DGKITLEDVEEAVSD 177 (302)
T ss_pred CCHHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHhCcHHHH------HHHHHHHHHhhCC---CCCCCHHHHHHHHhh
Confidence 99999999887777655 9999999999999988654332 5556665543211 111111333333332
Q ss_pred -hHHHHHHHHHHhhcchHHHHhhchhhHhhhc
Q 007723 537 -PDDYWQEIRTVQAMHEVVQGSRLKYDDVVAS 567 (591)
Q Consensus 537 -~~~~~~~~~~~~~~~d~~~a~~~~~~~~~~~ 567 (591)
.+...+....++..+|...+..+.+.....+
T Consensus 178 ~~~~~if~l~dal~~~~~~~a~~~l~~l~~~~ 209 (302)
T TIGR01128 178 SARFNVFDLTDALLEGKAARALRILKGLLGEG 209 (302)
T ss_pred hhcCCHHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 2224567778888999988888777766544
No 380
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.22 E-value=0.004 Score=57.25 Aligned_cols=22 Identities=36% Similarity=0.697 Sum_probs=20.1
Q ss_pred CeEecCCCCcHHHHHHHHHHHH
Q 007723 314 PILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 314 ilL~GppGvGKT~la~~lA~~l 335 (591)
++|+|+||+||||+++.|+..+
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhc
Confidence 5789999999999999999875
No 381
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.21 E-value=0.017 Score=62.76 Aligned_cols=26 Identities=38% Similarity=0.483 Sum_probs=22.7
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRIV 336 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l~ 336 (591)
+..++|+||+||||||++..||..+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~ 246 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYA 246 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34678999999999999999998875
No 382
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.20 E-value=0.022 Score=55.22 Aligned_cols=27 Identities=26% Similarity=0.286 Sum_probs=22.9
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHHHh
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
+.-+.|+|++|+||||+++.|+..+..
T Consensus 24 ~~~i~i~G~~GsGKSTla~~l~~~l~~ 50 (198)
T PRK03846 24 GVVLWFTGLSGSGKSTVAGALEEALHE 50 (198)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 345679999999999999999998743
No 383
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.18 E-value=0.0079 Score=57.33 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=22.2
Q ss_pred CCCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 310 TKNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 310 ~~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
.+..+.|+||.|+|||||++.|+..+
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 44567799999999999999999765
No 384
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=96.18 E-value=0.025 Score=52.64 Aligned_cols=133 Identities=14% Similarity=0.144 Sum_probs=72.6
Q ss_pred ecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhc
Q 007723 317 LGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIG 396 (591)
Q Consensus 317 ~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~ 396 (591)
++.+||||||++.+|++.+.+ +.-+.-| .+ .| + .....++.+++.+.+....++|+|-=..+..
T Consensus 5 IAtiGCGKTTva~aL~~LFg~---------wgHvQnD--nI-~~-k---~~~~f~~~~l~~L~~~~~~vViaDRNNh~~r 68 (168)
T PF08303_consen 5 IATIGCGKTTVALALSNLFGE---------WGHVQND--NI-TG-K---RKPKFIKAVLELLAKDTHPVVIADRNNHQKR 68 (168)
T ss_pred ecCCCcCHHHHHHHHHHHcCC---------CCccccC--CC-CC-C---CHHHHHHHHHHHHhhCCCCEEEEeCCCchHH
Confidence 588999999999999998731 1111111 11 11 1 2233466677777666677899997666532
Q ss_pred CCCCCCCCCCccHHHHHhhccccc-----CCcEEEEecCCh--hHHHhhhccc-HHHHccC---cceeecCCCHHHHHHH
Q 007723 397 SGTVGRGNKGTGLDISNLLKPSLG-----RGELQCIASTTQ--DEHRTQFEKD-KALARRF---QPVLISEPSQEDAVRI 465 (591)
Q Consensus 397 ~~~~~~~~~~~~~~~~n~L~~~le-----~g~v~lI~att~--~e~~~~~~~d-~aL~~Rf---~~i~i~~p~~~e~~~i 465 (591)
. ...+.+.+..... ...+++|+-.-. ..+.....+. ..+..|= +.|.....+......|
T Consensus 69 e----------R~ql~~~~~~~~~~yl~~~~~~r~VaL~fv~~~~~~~i~~it~~RV~~RGDNHQTika~~~~~~~~~~I 138 (168)
T PF08303_consen 69 E----------RKQLFEDVSQLKPDYLPYDTNVRFVALNFVHDDDLDEIRRITQDRVLARGDNHQTIKADSKDEKKVEGI 138 (168)
T ss_pred H----------HHHHHHHHHHhcccccccCCCeEEEEEEccCCCCHHHHHHHHHHHHHhcCcCcceeecCCCCHHHHHHH
Confidence 2 2223333332221 335666653211 1111111111 2333343 3477777778888888
Q ss_pred HHHHHHHHHh
Q 007723 466 LLGLREKYEA 475 (591)
Q Consensus 466 L~~~~~~~~~ 475 (591)
+.+...+++.
T Consensus 139 m~gFi~rfep 148 (168)
T PF08303_consen 139 MEGFIKRFEP 148 (168)
T ss_pred HHHHHHhcCC
Confidence 8888888753
No 385
>PRK14530 adenylate kinase; Provisional
Probab=96.18 E-value=0.0048 Score=60.63 Aligned_cols=25 Identities=32% Similarity=0.494 Sum_probs=22.7
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
.+.++|+|+||+||||+++.|++.+
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3568999999999999999999987
No 386
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.17 E-value=0.015 Score=59.08 Aligned_cols=28 Identities=29% Similarity=0.421 Sum_probs=23.0
Q ss_pred CCCCCeEecCCCCcHHHHHHHHHHHHHh
Q 007723 310 TKNNPILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 310 ~~~~ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
.+..++|.|+||+|||+++..++..+..
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~ 56 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLIT 56 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3456789999999999999999887643
No 387
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=96.17 E-value=0.008 Score=58.50 Aligned_cols=42 Identities=17% Similarity=0.335 Sum_probs=28.9
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehh
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMG 355 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~ 355 (591)
.+|+++.|.+|+|||++++.+...+.....| ....++-+|..
T Consensus 38 ~~h~li~G~tgsGKS~~l~~ll~~l~~~~~p---~~~~l~iiD~k 79 (205)
T PF01580_consen 38 NPHLLIAGATGSGKSTLLRTLLLSLALTYSP---DDVQLYIIDPK 79 (205)
T ss_dssp S-SEEEE--TTSSHHHHHHHHHHHHHTT--T---TTEEEEEE-TT
T ss_pred CceEEEEcCCCCCccHHHHHHHHHHHHHhcC---CccEEEEEcCC
Confidence 4599999999999999999999888653322 25677777765
No 388
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=96.16 E-value=0.0071 Score=59.82 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=19.3
Q ss_pred CeEecCCCCcHHHHHHHHHHH
Q 007723 314 PILLGESGVGKTAIAEGLAIR 334 (591)
Q Consensus 314 ilL~GppGvGKT~la~~lA~~ 334 (591)
+++.|+||+|||++++.+...
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~ 21 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKD 21 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHh
Confidence 578999999999999999887
No 389
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.16 E-value=0.12 Score=56.07 Aligned_cols=27 Identities=30% Similarity=0.363 Sum_probs=22.9
Q ss_pred CCCeEecCCCCcHHHHHHHHHHHHHhC
Q 007723 312 NNPILLGESGVGKTAIAEGLAIRIVQA 338 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~l~~~ 338 (591)
.-++|+|++|+||||++..||..+...
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~~~ 127 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQRK 127 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 346799999999999999999987543
No 390
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.15 E-value=0.0062 Score=59.24 Aligned_cols=23 Identities=13% Similarity=0.231 Sum_probs=20.4
Q ss_pred CCCeEecCCCCcHHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIR 334 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~ 334 (591)
.-++|+||.|+||||+.+.++..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHH
Confidence 45789999999999999999854
No 391
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.14 E-value=0.0089 Score=54.05 Aligned_cols=40 Identities=20% Similarity=0.365 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHh--cCCCCCeEecCCCCcHHHHHHHHHHHHH
Q 007723 297 TEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIV 336 (591)
Q Consensus 297 ~~i~~l~~~L~~--~~~~~ilL~GppGvGKT~la~~lA~~l~ 336 (591)
++..++-+.+.+ +.+..++|.|+.|+||||+++++++.+.
T Consensus 6 ~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 6 KAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 344455554444 2344567999999999999999999874
No 392
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.14 E-value=0.02 Score=62.13 Aligned_cols=101 Identities=12% Similarity=0.225 Sum_probs=57.8
Q ss_pred CCCccCCcHHHHHHHHHHHHhcCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhh---cccccc
Q 007723 288 LIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM---AGAKER 364 (591)
Q Consensus 288 ~~~~vvG~~~~i~~l~~~L~~~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~---~g~~~~ 364 (591)
.|+.+.........+.+++.++. .-+|++||.|+||||...++...+......-.....++ +.....+. ...+-.
T Consensus 236 ~l~~Lg~~~~~~~~~~~~~~~p~-GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPV-E~~~~gI~Q~qVN~k~g 313 (500)
T COG2804 236 DLEKLGMSPFQLARLLRLLNRPQ-GLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPV-EYQLPGINQVQVNPKIG 313 (500)
T ss_pred CHHHhCCCHHHHHHHHHHHhCCC-eEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCe-eeecCCcceeecccccC
Confidence 44555555556666666665432 34567799999999999999999866543211111111 11111111 011111
Q ss_pred chHHHHHHHHHHHHHhcCCeEEEEcCcchh
Q 007723 365 GELEARVTTLISEIQKSGDVILFIDEVHTL 394 (591)
Q Consensus 365 g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L 394 (591)
-.|...++.++ ..++.||.|.||-..
T Consensus 314 ltfa~~LRa~L----RqDPDvImVGEIRD~ 339 (500)
T COG2804 314 LTFARALRAIL----RQDPDVIMVGEIRDL 339 (500)
T ss_pred CCHHHHHHHHh----ccCCCeEEEeccCCH
Confidence 24555555544 477889999999765
No 393
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.14 E-value=0.039 Score=55.22 Aligned_cols=89 Identities=17% Similarity=0.290 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhcCCCCC--eEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhcccccc-----------
Q 007723 298 EIQRIIQILCRRTKNNP--ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKER----------- 364 (591)
Q Consensus 298 ~i~~l~~~L~~~~~~~i--lL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~~~~----------- 364 (591)
....++..+....++.. =|+||||+|||||+..|...+...+ ...-++.+|.++-..|...-
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g-----~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~ 88 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERG-----KRVAVLAVDPSSPFTGGALLGDRIRMQELSR 88 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT-------EEEEEE-GGGGCC---SS--GGGCHHHHT
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcC-----CceEEEEECCCCCCCCCcccccHHHhcCcCC
Confidence 33445555554443332 3899999999999999999986532 14566777877655432211
Q ss_pred ---------------chHHHHHHHHHHHHHhcCCeEEEEcCc
Q 007723 365 ---------------GELEARVTTLISEIQKSGDVILFIDEV 391 (591)
Q Consensus 365 ---------------g~~~~~i~~i~~~~~~~~~~ILfIDEi 391 (591)
|.+.....+.+.-+...+.-++||.=+
T Consensus 89 d~~vfIRS~atRG~lGGls~~t~~~v~ll~aaG~D~IiiETV 130 (266)
T PF03308_consen 89 DPGVFIRSMATRGSLGGLSRATRDAVRLLDAAGFDVIIIETV 130 (266)
T ss_dssp STTEEEEEE---SSHHHHHHHHHHHHHHHHHTT-SEEEEEEE
T ss_pred CCCEEEeecCcCCCCCCccHhHHHHHHHHHHcCCCEEEEeCC
Confidence 234445566666566666667776543
No 394
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=96.14 E-value=0.015 Score=64.82 Aligned_cols=28 Identities=36% Similarity=0.453 Sum_probs=24.4
Q ss_pred cCCCCCeEecCCCCcHHHHHHHHHHHHH
Q 007723 309 RTKNNPILLGESGVGKTAIAEGLAIRIV 336 (591)
Q Consensus 309 ~~~~~ilL~GppGvGKT~la~~lA~~l~ 336 (591)
+.+..+++.||+|||||+|.++||..-.
T Consensus 417 ~~G~~llI~G~SG~GKTsLlRaiaGLWP 444 (604)
T COG4178 417 RPGERLLITGESGAGKTSLLRALAGLWP 444 (604)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccCc
Confidence 4567899999999999999999998653
No 395
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=96.13 E-value=0.07 Score=51.24 Aligned_cols=30 Identities=33% Similarity=0.389 Sum_probs=25.9
Q ss_pred CCCCCeEecCCCCcHHHHHHHHHHHHHhCC
Q 007723 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAE 339 (591)
Q Consensus 310 ~~~~ilL~GppGvGKT~la~~lA~~l~~~~ 339 (591)
...++++||++|.||||+|.+++.+....+
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G 50 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHG 50 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCC
Confidence 457899999999999999999999876543
No 396
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.13 E-value=0.066 Score=51.43 Aligned_cols=24 Identities=25% Similarity=0.241 Sum_probs=20.7
Q ss_pred CCCeEecCCCCcHHHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~l 335 (591)
.-++|+||+|+|||+|++.|....
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhcC
Confidence 346899999999999999998754
No 397
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.12 E-value=0.014 Score=71.95 Aligned_cols=140 Identities=21% Similarity=0.238 Sum_probs=79.6
Q ss_pred CCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhc--cccccchHHHHHHHHHHHHHhcCCeEEE
Q 007723 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA--GAKERGELEARVTTLISEIQKSGDVILF 387 (591)
Q Consensus 310 ~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~--g~~~~g~~~~~i~~i~~~~~~~~~~ILf 387 (591)
++.+++|.||.|+|||.++..+|+.....-++.. +. -..|+.+++. -+...|+..-+-..++..+. ++..+|
T Consensus 439 ~~~pillqG~tssGKtsii~~la~~~g~~~vrin--nh--ehtd~qeyig~y~~~~~g~l~freg~LV~Alr--~G~~~v 512 (1856)
T KOG1808|consen 439 GKFPILLQGPTSSGKTSIIKELARATGKNIVRIN--NH--EHTDLQEYIGTYVADDNGDLVFREGVLVQALR--NGDWIV 512 (1856)
T ss_pred CCCCeEEecCcCcCchhHHHHHHHHhccCceehh--cc--ccchHHHHHHhhhcCCCCCeeeehhHHHHHHH--hCCEEE
Confidence 4468999999999999999999998833211110 00 0123333332 11223333222233344333 456888
Q ss_pred EcCcchhhcCCCCCCCCCCccHHHHHhhcccccCC----------------cEEEEecCChh-HHHhhhcccHHHHccCc
Q 007723 388 IDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG----------------ELQCIASTTQD-EHRTQFEKDKALARRFQ 450 (591)
Q Consensus 388 IDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g----------------~v~lI~att~~-e~~~~~~~d~aL~~Rf~ 450 (591)
+||++.. ..+..++|..++... .+++.++-++. -|.....+..+|.+||.
T Consensus 513 lD~lnla-------------~~dvL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn~~~~y~grk~lsRa~~~rf~ 579 (1856)
T KOG1808|consen 513 LDELNLA-------------PHDVLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQNPPGTYGGRKILSRALRNRFI 579 (1856)
T ss_pred ecccccc-------------chHHHHHHHhhhhhhccccccccceeeccCcchhhhhhccCccccchhhhhhhcccccch
Confidence 9999877 445666666666421 22333333332 13333345577888998
Q ss_pred ceeecCCCHHHHHHHHHH
Q 007723 451 PVLISEPSQEDAVRILLG 468 (591)
Q Consensus 451 ~i~i~~p~~~e~~~iL~~ 468 (591)
.+++.....++...|+.+
T Consensus 580 e~~f~~~~e~e~~~i~~~ 597 (1856)
T KOG1808|consen 580 ELHFDDIGEEELEEILEH 597 (1856)
T ss_pred hhhhhhcCchhhhhhhcc
Confidence 777777777777777644
No 398
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.12 E-value=0.025 Score=58.59 Aligned_cols=36 Identities=25% Similarity=0.488 Sum_probs=28.0
Q ss_pred HHHHHHHHhcCCCCCeEecCCCCcHHHHHHHHHHHHHh
Q 007723 300 QRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 300 ~~l~~~L~~~~~~~ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
..|..++. .+.+++++|++|+||||++++|...+..
T Consensus 123 ~~L~~~v~--~~~~ilI~G~tGSGKTTll~al~~~i~~ 158 (299)
T TIGR02782 123 DVLREAVL--ARKNILVVGGTGSGKTTLANALLAEIAK 158 (299)
T ss_pred HHHHHHHH--cCCeEEEECCCCCCHHHHHHHHHHHhhc
Confidence 33444443 4568999999999999999999988743
No 399
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.11 E-value=0.014 Score=67.90 Aligned_cols=26 Identities=15% Similarity=0.348 Sum_probs=22.1
Q ss_pred CCCeEecCCCCcHHHHHHHHHHHHHh
Q 007723 312 NNPILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
.-.+|.|+||||||++++++...+..
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~~~~~ 394 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAAREAWEA 394 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 35689999999999999999877644
No 400
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.11 E-value=0.0049 Score=58.66 Aligned_cols=22 Identities=23% Similarity=0.382 Sum_probs=20.5
Q ss_pred CeEecCCCCcHHHHHHHHHHHH
Q 007723 314 PILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 314 ilL~GppGvGKT~la~~lA~~l 335 (591)
++++|+||+||||+++.|+..+
T Consensus 2 i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 5789999999999999999977
No 401
>PRK10867 signal recognition particle protein; Provisional
Probab=96.10 E-value=0.074 Score=57.79 Aligned_cols=76 Identities=18% Similarity=0.310 Sum_probs=44.3
Q ss_pred CCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhh-------------cccc-----ccchHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM-------------AGAK-----ERGELEARVTTL 374 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~-------------~g~~-----~~g~~~~~i~~i 374 (591)
-++|+|++|+||||++..||..+.... +.++.-+++.... .|.. ...+........
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~l~~~~------G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a 175 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKYLKKKK------KKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAA 175 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhc------CCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHH
Confidence 357999999999999999998875431 2333333322111 0110 112333444445
Q ss_pred HHHHHhcCCeEEEEcCcchh
Q 007723 375 ISEIQKSGDVILFIDEVHTL 394 (591)
Q Consensus 375 ~~~~~~~~~~ILfIDEi~~L 394 (591)
+..+...+..++|||=..++
T Consensus 176 ~~~a~~~~~DvVIIDTaGrl 195 (433)
T PRK10867 176 LEEAKENGYDVVIVDTAGRL 195 (433)
T ss_pred HHHHHhcCCCEEEEeCCCCc
Confidence 55555455668999988766
No 402
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.09 E-value=0.021 Score=55.41 Aligned_cols=21 Identities=24% Similarity=0.355 Sum_probs=19.2
Q ss_pred CCeEecCCCCcHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAI 333 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~ 333 (591)
-++|+||.|+||||+.+.++.
T Consensus 30 ~~~ltG~Ng~GKStll~~i~~ 50 (200)
T cd03280 30 VLVITGPNAGGKTVTLKTLGL 50 (200)
T ss_pred EEEEECCCCCChHHHHHHHHH
Confidence 489999999999999999983
No 403
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=96.08 E-value=0.061 Score=50.59 Aligned_cols=24 Identities=25% Similarity=0.230 Sum_probs=18.5
Q ss_pred CCCeEecCCCCcHHH-HHHHHHHHH
Q 007723 312 NNPILLGESGVGKTA-IAEGLAIRI 335 (591)
Q Consensus 312 ~~ilL~GppGvGKT~-la~~lA~~l 335 (591)
.++++.||+|+|||+ ++..+...+
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~ 49 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEAL 49 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHh
Confidence 688999999999999 444444444
No 404
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.08 E-value=0.019 Score=59.84 Aligned_cols=28 Identities=32% Similarity=0.482 Sum_probs=24.4
Q ss_pred cCCCCCeEecCCCCcHHHHHHHHHHHHH
Q 007723 309 RTKNNPILLGESGVGKTAIAEGLAIRIV 336 (591)
Q Consensus 309 ~~~~~ilL~GppGvGKT~la~~lA~~l~ 336 (591)
+.+.+++++||+|+||||+++++...+.
T Consensus 142 ~~~~~ili~G~tGsGKTTll~al~~~~~ 169 (308)
T TIGR02788 142 ASRKNIIISGGTGSGKTTFLKSLVDEIP 169 (308)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHccCC
Confidence 3567999999999999999999988763
No 405
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.08 E-value=0.014 Score=61.97 Aligned_cols=27 Identities=30% Similarity=0.414 Sum_probs=23.6
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHHHh
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
+..++|+||+|+||||++..||..+..
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~ 267 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHG 267 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 356789999999999999999988754
No 406
>COG1485 Predicted ATPase [General function prediction only]
Probab=96.07 E-value=0.022 Score=59.13 Aligned_cols=26 Identities=23% Similarity=0.264 Sum_probs=23.2
Q ss_pred CCCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 310 TKNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 310 ~~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
...++.|||+-|+|||.|.-.+...+
T Consensus 64 ~~~GlYl~GgVGrGKT~LMD~Fy~~l 89 (367)
T COG1485 64 PVRGLYLWGGVGRGKTMLMDLFYESL 89 (367)
T ss_pred CCceEEEECCCCccHHHHHHHHHhhC
Confidence 45789999999999999999998876
No 407
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.06 E-value=0.019 Score=59.83 Aligned_cols=27 Identities=33% Similarity=0.576 Sum_probs=23.9
Q ss_pred CCCCCeEecCCCCcHHHHHHHHHHHHH
Q 007723 310 TKNNPILLGESGVGKTAIAEGLAIRIV 336 (591)
Q Consensus 310 ~~~~ilL~GppGvGKT~la~~lA~~l~ 336 (591)
.+.|++++|++|+||||++++|...+.
T Consensus 143 ~~~nilI~G~tGSGKTTll~aL~~~i~ 169 (323)
T PRK13833 143 SRLNIVISGGTGSGKTTLANAVIAEIV 169 (323)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 356899999999999999999998874
No 408
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=96.06 E-value=0.24 Score=51.78 Aligned_cols=218 Identities=14% Similarity=0.089 Sum_probs=116.3
Q ss_pred CCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhccccccchHHHHHHHHHHHHHh----cCCeEEEE
Q 007723 313 NPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFI 388 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~~----~~~~ILfI 388 (591)
..+|||+.---+...++.+...+.... .....+..+|.. +.. .+..++.++.. +++.+++|
T Consensus 3 ~yll~G~e~~l~~~~~~~l~~~~~~~~----~~~fn~~~~d~~----------~~~-~~~~~~~~~~t~pff~~~rlVvv 67 (326)
T PRK07452 3 IYLYWGEDDFALNQAIEKLIDQVVDPE----WKSFNYSRLDGD----------DAD-QAIQALNEAMTPPFGSGGRLVWL 67 (326)
T ss_pred EEEEEcChHHHHHHHHHHHHHHhCCch----hhhcchhhcCCc----------cch-HHHHHHHHhcCCCCCCCceEEEE
Confidence 457899888667666777766552211 111222222211 111 13455555432 45678899
Q ss_pred cCcchhhcCCCCCCCCCCccHHHHHhhcccccC---CcEEEEecCChhHHHhhhcccHHHHccCcceeecCC---CHHHH
Q 007723 389 DEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR---GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEP---SQEDA 462 (591)
Q Consensus 389 DEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~---g~v~lI~att~~e~~~~~~~d~aL~~Rf~~i~i~~p---~~~e~ 462 (591)
++.+.+.+ ...+..+.|..+++. ..+.++.++.....+ ......+...+..+.+..+ +.+++
T Consensus 68 ~~~~~~~~----------~~~~~~~~L~~~l~~~~~~~~li~~~~~~~d~r--~k~~k~l~k~~~~~~~~~~~~~~~~~l 135 (326)
T PRK07452 68 KNSPLCQG----------CSEELLAELERTLPLIPENTHLLLTNTKKPDGR--LKSTKLLQKLAEEKEFSLIPPWDTEGL 135 (326)
T ss_pred eCchhhcc----------CCHHHHHHHHHHHcCCCCCcEEEEEeCCCcchH--HHHHHHHHHceeEEEecCCCcccHHHH
Confidence 99876521 133455566666653 333333333322111 1122445555555555544 44555
Q ss_pred HHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhhhcCCCcHHHHHHHHHHhhHhhhhhhcc-chhhhhhhhcCChHHHH
Q 007723 463 VRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKR-KKEQQTCILSKPPDDYW 541 (591)
Q Consensus 463 ~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i~~~~lp~~ai~lld~a~a~~~~~~~~~-~~~~~i~~l~~~~~~~~ 541 (591)
...++..+. ..|+.|++++++.++......+.. +.+-++..+..+ .+... ...+.|..+....+.-.
T Consensus 136 ~~~i~~~~~----~~g~~i~~~a~~~L~~~~g~dl~~------l~~EleKL~ly~--~~~~~~It~~~V~~~v~~~~~~i 203 (326)
T PRK07452 136 KQLVERTAQ----ELGVKLTPEAAELLAEAVGNDSRR------LYNELEKLALYA--ENSTKPISAEEVKALVSNTTQNS 203 (326)
T ss_pred HHHHHHHHH----HcCCCCCHHHHHHHHHHhCccHHH------HHHHHHHHHHhc--cCCCCccCHHHHHHHhccCcCcH
Confidence 666655544 459999999999999998754332 333444333210 01111 12244555544433344
Q ss_pred HHHHHHhhcchHHHHhhchhhHhhhccC
Q 007723 542 QEIRTVQAMHEVVQGSRLKYDDVVASMG 569 (591)
Q Consensus 542 ~~~~~~~~~~d~~~a~~~~~~~~~~~~~ 569 (591)
++...++..+|..+|.++.+.....+.+
T Consensus 204 f~l~dai~~~~~~~A~~~l~~L~~~g~~ 231 (326)
T PRK07452 204 LQLADALLQGNTGKALALLDDLLDANEP 231 (326)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCc
Confidence 5588899999999998887766554433
No 409
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.06 E-value=0.0056 Score=58.72 Aligned_cols=23 Identities=43% Similarity=0.570 Sum_probs=21.1
Q ss_pred CCeEecCCCCcHHHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l 335 (591)
+++|+|+||+||||+++.|+..+
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 37899999999999999999976
No 410
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.05 E-value=0.0053 Score=48.84 Aligned_cols=22 Identities=36% Similarity=0.564 Sum_probs=20.4
Q ss_pred CeEecCCCCcHHHHHHHHHHHH
Q 007723 314 PILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 314 ilL~GppGvGKT~la~~lA~~l 335 (591)
+.+.|+||+|||++++.++..+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999987
No 411
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.05 E-value=0.012 Score=60.46 Aligned_cols=27 Identities=41% Similarity=0.497 Sum_probs=23.3
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHHHh
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
+..++|+||+|+||||++..||..+..
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~ 220 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVL 220 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 346789999999999999999988753
No 412
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.04 E-value=0.041 Score=55.90 Aligned_cols=82 Identities=15% Similarity=0.261 Sum_probs=47.7
Q ss_pred HhcCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEe-ehhhhhccc-------cccchHHHHHHHHHHHH
Q 007723 307 CRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSL-DMGLLMAGA-------KERGELEARVTTLISEI 378 (591)
Q Consensus 307 ~~~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~l-d~~~l~~g~-------~~~g~~~~~i~~i~~~~ 378 (591)
+.....-||++||.|+||||..-++-..++... ...++.+ |.-+++... +..|.-...+...++.+
T Consensus 121 ~~~~~GLILVTGpTGSGKSTTlAamId~iN~~~------~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLraA 194 (353)
T COG2805 121 AESPRGLILVTGPTGSGKSTTLAAMIDYINKHK------AKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALRAA 194 (353)
T ss_pred HhCCCceEEEeCCCCCcHHHHHHHHHHHHhccC------CcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHH
Confidence 334445567789999999999999999886533 3333333 232332111 12233223333344444
Q ss_pred HhcCCeEEEEcCcchh
Q 007723 379 QKSGDVILFIDEVHTL 394 (591)
Q Consensus 379 ~~~~~~ILfIDEi~~L 394 (591)
...++.|++|-|+-.+
T Consensus 195 LReDPDVIlvGEmRD~ 210 (353)
T COG2805 195 LREDPDVILVGEMRDL 210 (353)
T ss_pred hhcCCCEEEEeccccH
Confidence 4467788888988665
No 413
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=96.04 E-value=0.027 Score=66.85 Aligned_cols=73 Identities=18% Similarity=0.236 Sum_probs=40.7
Q ss_pred CCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhh----hccccccchHHHHHHHHHHHHHh-----cCC
Q 007723 313 NPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLL----MAGAKERGELEARVTTLISEIQK-----SGD 383 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l----~~g~~~~g~~~~~i~~i~~~~~~-----~~~ 383 (591)
-++|.|.+||||||+++.+...+... +..++-+-.+.. +.+ ..|.-...+..++..... ...
T Consensus 364 v~vv~G~AGTGKTT~l~~~~~~~e~~-------G~~V~~~ApTGkAA~~L~e--~tGi~a~TI~sll~~~~~~~~~l~~~ 434 (988)
T PRK13889 364 LGVVVGYAGTGKSAMLGVAREAWEAA-------GYEVRGAALSGIAAENLEG--GSGIASRTIASLEHGWGQGRDLLTSR 434 (988)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHc-------CCeEEEecCcHHHHHHHhh--ccCcchhhHHHHHhhhcccccccccC
Confidence 46799999999999998877665432 344443322211 111 012112233333321111 245
Q ss_pred eEEEEcCcchh
Q 007723 384 VILFIDEVHTL 394 (591)
Q Consensus 384 ~ILfIDEi~~L 394 (591)
.+|||||+.++
T Consensus 435 ~vlIVDEASMv 445 (988)
T PRK13889 435 DVLVIDEAGMV 445 (988)
T ss_pred cEEEEECcccC
Confidence 69999999988
No 414
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.01 E-value=0.025 Score=53.54 Aligned_cols=27 Identities=33% Similarity=0.337 Sum_probs=23.4
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHHHh
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
+..++|+|++|+||||+++.|+..+..
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~~~l~~ 33 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYERLKL 33 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 346789999999999999999999853
No 415
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.01 E-value=0.037 Score=58.00 Aligned_cols=77 Identities=16% Similarity=0.292 Sum_probs=46.8
Q ss_pred CCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhcccc--------------------------ccch
Q 007723 313 NPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAK--------------------------ERGE 366 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~~--------------------------~~g~ 366 (591)
-+-|.|+||+||||++..+...+...+. ...++.+|.+....|.. ..|.
T Consensus 58 ~igi~G~~GaGKSTl~~~l~~~l~~~g~-----~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~ 132 (332)
T PRK09435 58 RIGITGVPGVGKSTFIEALGMHLIEQGH-----KVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGG 132 (332)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCC-----eEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcccccc
Confidence 3468899999999999999998865321 23444555443321111 1122
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEcCcchh
Q 007723 367 LEARVTTLISEIQKSGDVILFIDEVHTL 394 (591)
Q Consensus 367 ~~~~i~~i~~~~~~~~~~ILfIDEi~~L 394 (591)
....+...+..+...+..++|||-++.-
T Consensus 133 ~a~~~~~~~~~~~~~g~d~viieT~Gv~ 160 (332)
T PRK09435 133 VARKTRETMLLCEAAGYDVILVETVGVG 160 (332)
T ss_pred hHHHHHHHHHHHhccCCCEEEEECCCCc
Confidence 3445556666665566678888876543
No 416
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.98 E-value=0.021 Score=59.69 Aligned_cols=26 Identities=23% Similarity=0.543 Sum_probs=23.6
Q ss_pred CCCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 310 TKNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 310 ~~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
.+.+++++|++|+||||++++|+..+
T Consensus 147 ~~~~ilI~G~tGSGKTTll~aL~~~~ 172 (319)
T PRK13894 147 AHRNILVIGGTGSGKTTLVNAIINEM 172 (319)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 46789999999999999999999875
No 417
>PRK13764 ATPase; Provisional
Probab=95.97 E-value=0.016 Score=65.09 Aligned_cols=28 Identities=25% Similarity=0.412 Sum_probs=24.8
Q ss_pred CCCCCeEecCCCCcHHHHHHHHHHHHHh
Q 007723 310 TKNNPILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 310 ~~~~ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
...+++++||+|+||||++++++..+..
T Consensus 256 ~~~~ILIsG~TGSGKTTll~AL~~~i~~ 283 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFAQALAEFYAD 283 (602)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4567999999999999999999998854
No 418
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=95.97 E-value=0.012 Score=51.53 Aligned_cols=78 Identities=18% Similarity=0.343 Sum_probs=43.3
Q ss_pred CeEecCCCCcHHHHHHHHHHH-H-HhCCCCcc----------ccCceEEEeehhhhhccccccchHHHHHHHHHHHHHhc
Q 007723 314 PILLGESGVGKTAIAEGLAIR-I-VQAEVPVF----------LLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKS 381 (591)
Q Consensus 314 ilL~GppGvGKT~la~~lA~~-l-~~~~~p~~----------~~~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~~~ 381 (591)
++|+|++|+|||||.++|... . .-+..|.. +.+..+..+|...+..+... ....+.+..+++.+...
T Consensus 2 V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~-~~~~~~~~~~~~~~~~~ 80 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQ-DNDGKEIRKFLEQISKS 80 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHH-HHHHHHHHHHHHHHCTE
T ss_pred EEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchh-hHHHHHHHHHHHHHHHC
Confidence 689999999999999999863 1 11122211 12334445565544322111 11112445566666445
Q ss_pred CCeEEEEcCcch
Q 007723 382 GDVILFIDEVHT 393 (591)
Q Consensus 382 ~~~ILfIDEi~~ 393 (591)
+-.++++| .+.
T Consensus 81 d~ii~vv~-~~~ 91 (116)
T PF01926_consen 81 DLIIYVVD-ASN 91 (116)
T ss_dssp SEEEEEEE-TTS
T ss_pred CEEEEEEE-CCC
Confidence 66667777 655
No 419
>PRK06696 uridine kinase; Validated
Probab=95.96 E-value=0.018 Score=56.97 Aligned_cols=44 Identities=23% Similarity=0.253 Sum_probs=31.5
Q ss_pred cHHHHHHHHHHHHhcC---CCCCeEecCCCCcHHHHHHHHHHHHHhC
Q 007723 295 RETEIQRIIQILCRRT---KNNPILLGESGVGKTAIAEGLAIRIVQA 338 (591)
Q Consensus 295 ~~~~i~~l~~~L~~~~---~~~ilL~GppGvGKT~la~~lA~~l~~~ 338 (591)
+.+.++.|.+.+.... ..-|.+.|++|+||||+|+.|+..+...
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~ 49 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKR 49 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4556677777655422 2234577999999999999999998543
No 420
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=95.95 E-value=0.0094 Score=62.81 Aligned_cols=38 Identities=21% Similarity=0.371 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhcCCCCCeEecCCCCcHHHHHHHHHHHHH
Q 007723 298 EIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIV 336 (591)
Q Consensus 298 ~i~~l~~~L~~~~~~~ilL~GppGvGKT~la~~lA~~l~ 336 (591)
.+..+...+. +.+.|++++||+|+||||++++|...+.
T Consensus 150 ~~~~~l~~~v-~~~~nilI~G~tGSGKTTll~aLl~~i~ 187 (344)
T PRK13851 150 DLEAFLHACV-VGRLTMLLCGPTGSGKTTMSKTLISAIP 187 (344)
T ss_pred HHHHHHHHHH-HcCCeEEEECCCCccHHHHHHHHHcccC
Confidence 3444444333 4567899999999999999999998774
No 421
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.94 E-value=0.022 Score=53.94 Aligned_cols=26 Identities=23% Similarity=0.360 Sum_probs=22.3
Q ss_pred CCCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 310 TKNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 310 ~~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
.+..+.|+||+|+|||||++.|+..+
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 34567899999999999999999865
No 422
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.93 E-value=0.0065 Score=59.55 Aligned_cols=22 Identities=23% Similarity=0.519 Sum_probs=17.9
Q ss_pred CeEecCCCCcHHHHHHHHHHHH
Q 007723 314 PILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 314 ilL~GppGvGKT~la~~lA~~l 335 (591)
.++.||||||||+++..+...+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 6788999999998877777766
No 423
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=95.91 E-value=0.065 Score=60.22 Aligned_cols=33 Identities=21% Similarity=0.418 Sum_probs=28.0
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEee
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld 353 (591)
...++|+|.+|+||||+.+.||+.+ +.+++.+|
T Consensus 6 ~~~i~LiG~~GaGKttvg~~LA~~L----------~~~fiD~D 38 (542)
T PRK14021 6 RPQAVIIGMMGAGKTRVGKEVAQMM----------RLPFADAD 38 (542)
T ss_pred CccEEEECCCCCCHHHHHHHHHHHh----------CCCEEEch
Confidence 4678999999999999999999998 56666554
No 424
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=95.91 E-value=0.0074 Score=56.86 Aligned_cols=24 Identities=33% Similarity=0.542 Sum_probs=22.2
Q ss_pred CCCeEecCCCCcHHHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~l 335 (591)
.+++|+|.+|+|||++++.||+.+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~l 26 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQAL 26 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999988
No 425
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=95.90 E-value=0.066 Score=49.43 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=21.3
Q ss_pred CeEecCCCCcHHHHHHHHHHHHHh
Q 007723 314 PILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 314 ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
+.+.|++|+|||+++..++..+..
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~ 25 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRA 25 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHH
Confidence 568899999999999999998754
No 426
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.90 E-value=0.02 Score=55.86 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=20.3
Q ss_pred CCCeEecCCCCcHHHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~l 335 (591)
.-++|+||.|+|||++.+.++...
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~~~ 53 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIALLA 53 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 447899999999999999997543
No 427
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=95.90 E-value=0.021 Score=60.61 Aligned_cols=27 Identities=15% Similarity=0.373 Sum_probs=24.1
Q ss_pred CCCCCeEecCCCCcHHHHHHHHHHHHH
Q 007723 310 TKNNPILLGESGVGKTAIAEGLAIRIV 336 (591)
Q Consensus 310 ~~~~ilL~GppGvGKT~la~~lA~~l~ 336 (591)
....++++||+|+||||+++++...+.
T Consensus 133 ~~glilI~GpTGSGKTTtL~aLl~~i~ 159 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAAIIRELA 159 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456789999999999999999999884
No 428
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=95.88 E-value=0.013 Score=56.57 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=19.8
Q ss_pred CCeEecCCCCcHHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAIR 334 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~ 334 (591)
+++|+|.||+|||++++.|...
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~ 23 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGR 23 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCC
Confidence 5899999999999999999753
No 429
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.88 E-value=0.022 Score=67.73 Aligned_cols=40 Identities=20% Similarity=0.249 Sum_probs=30.6
Q ss_pred cCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCCcEEEEe
Q 007723 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIA 428 (591)
Q Consensus 381 ~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g~v~lI~ 428 (591)
.++.||++||+-.-++. +...-+|++|...+.....++|+
T Consensus 1143 RnPkILLLDEATSALDs--------eSErvVQeALd~a~~gRT~IvIA 1182 (1228)
T KOG0055|consen 1143 RNPKILLLDEATSALDS--------ESERVVQEALDRAMEGRTTIVIA 1182 (1228)
T ss_pred cCCCeeeeeccchhhhh--------hhHHHHHHHHHHhhcCCcEEEEe
Confidence 46789999999877644 33677899999988776666665
No 430
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=95.88 E-value=0.084 Score=52.67 Aligned_cols=26 Identities=27% Similarity=0.464 Sum_probs=22.2
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRIV 336 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l~ 336 (591)
.-+++++|++|+|||+++..|...+.
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~~~ 38 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYYLR 38 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhc
Confidence 45789999999999999999987653
No 431
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.86 E-value=0.02 Score=54.22 Aligned_cols=26 Identities=38% Similarity=0.478 Sum_probs=22.8
Q ss_pred CCCeEecCCCCcHHHHHHHHHHHHHh
Q 007723 312 NNPILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
..++|+|+||+||||+++.|+..+..
T Consensus 5 ~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 5 VTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45689999999999999999998854
No 432
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.82 E-value=0.044 Score=54.72 Aligned_cols=26 Identities=23% Similarity=0.360 Sum_probs=21.4
Q ss_pred CCCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 310 TKNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 310 ~~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
.+..++++||||+|||+++..++...
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~ 45 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNG 45 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45667899999999999998876654
No 433
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=95.82 E-value=0.022 Score=62.98 Aligned_cols=48 Identities=17% Similarity=0.207 Sum_probs=32.2
Q ss_pred CCCccCCcHHHHHHHHHHHHhcCCCCCeEecCCCCcHHHHHHHHHHHHH
Q 007723 288 LIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIV 336 (591)
Q Consensus 288 ~~~~vvG~~~~i~~l~~~L~~~~~~~ilL~GppGvGKT~la~~lA~~l~ 336 (591)
.|+++--.++.++.+..++. ....-++++||+|+||||+..++...+.
T Consensus 220 ~l~~Lg~~~~~~~~l~~~~~-~~~GlilitGptGSGKTTtL~a~L~~l~ 267 (486)
T TIGR02533 220 DLETLGMSPELLSRFERLIR-RPHGIILVTGPTGSGKTTTLYAALSRLN 267 (486)
T ss_pred CHHHcCCCHHHHHHHHHHHh-cCCCEEEEEcCCCCCHHHHHHHHHhccC
Confidence 44443224445555665554 3334578999999999999998877774
No 434
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.81 E-value=0.016 Score=57.69 Aligned_cols=28 Identities=29% Similarity=0.336 Sum_probs=22.6
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHHHhC
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRIVQA 338 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l~~~ 338 (591)
+.-++|.|+||+|||+++..++......
T Consensus 13 G~l~lI~G~~G~GKT~~~~~~~~~~~~~ 40 (242)
T cd00984 13 GDLIIIAARPSMGKTAFALNIAENIAKK 40 (242)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence 3456789999999999999988776543
No 435
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.81 E-value=0.02 Score=54.23 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=20.6
Q ss_pred CCeEecCCCCcHHHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l 335 (591)
.++++|+||+|||++|..++...
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~ 25 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS 25 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc
Confidence 46899999999999999999865
No 436
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.80 E-value=0.031 Score=56.68 Aligned_cols=26 Identities=23% Similarity=0.264 Sum_probs=21.4
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRIV 336 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l~ 336 (591)
+.-++++|+||+|||+++..++....
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a 61 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQA 61 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 34568899999999999999877653
No 437
>PLN02165 adenylate isopentenyltransferase
Probab=95.80 E-value=0.013 Score=61.14 Aligned_cols=29 Identities=24% Similarity=0.459 Sum_probs=24.5
Q ss_pred HhcCCCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 307 CRRTKNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 307 ~~~~~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
.+..+..++|+||+|+|||+|+..||..+
T Consensus 39 ~~~~g~iivIiGPTGSGKStLA~~LA~~l 67 (334)
T PLN02165 39 QNCKDKVVVIMGATGSGKSRLSVDLATRF 67 (334)
T ss_pred cCCCCCEEEEECCCCCcHHHHHHHHHHHc
Confidence 33445567899999999999999999987
No 438
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=95.79 E-value=0.0074 Score=64.96 Aligned_cols=29 Identities=21% Similarity=0.197 Sum_probs=24.9
Q ss_pred hcCCCCCeEecCCCCcHHHHHHHHHHHHH
Q 007723 308 RRTKNNPILLGESGVGKTAIAEGLAIRIV 336 (591)
Q Consensus 308 ~~~~~~ilL~GppGvGKT~la~~lA~~l~ 336 (591)
+.....|+|+|++|+|||||++.|+..+.
T Consensus 216 ~~~~~~IvI~G~~gsGKTTL~~~La~~~g 244 (399)
T PRK08099 216 PFFVRTVAILGGESSGKSTLVNKLANIFN 244 (399)
T ss_pred hCCCcEEEEEcCCCCCHHHHHHHHHHHhC
Confidence 34457889999999999999999999873
No 439
>PRK14531 adenylate kinase; Provisional
Probab=95.78 E-value=0.0067 Score=58.06 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=22.0
Q ss_pred CCCeEecCCCCcHHHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~l 335 (591)
..++++||||+||||+++.|+..+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 458999999999999999999986
No 440
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=95.75 E-value=0.04 Score=52.79 Aligned_cols=79 Identities=13% Similarity=0.140 Sum_probs=41.4
Q ss_pred CeEecCCCCcHHHHHHHHHHHH--HhCCCCccccCceEE-------EeehhhhhccccccchHHHHHHHHHHHHHh-cCC
Q 007723 314 PILLGESGVGKTAIAEGLAIRI--VQAEVPVFLLSKRIM-------SLDMGLLMAGAKERGELEARVTTLISEIQK-SGD 383 (591)
Q Consensus 314 ilL~GppGvGKT~la~~lA~~l--~~~~~p~~~~~~~~~-------~ld~~~l~~g~~~~g~~~~~i~~i~~~~~~-~~~ 383 (591)
++|+||.|.|||++.+.++... ...+.+.......+- .+...... ....+.+...++.+..-+.. .++
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~--~~~~s~fs~~~~~l~~~l~~~~~~ 79 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSL--AQGLSTFMVEMKETANILKNATEN 79 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCch--hccccHHHHHHHHHHHHHHhCCCC
Confidence 5799999999999999998443 222221111111111 11111111 11223455545554443333 367
Q ss_pred eEEEEcCcchh
Q 007723 384 VILFIDEVHTL 394 (591)
Q Consensus 384 ~ILfIDEi~~L 394 (591)
.++++||...-
T Consensus 80 ~llllDEp~~g 90 (185)
T smart00534 80 SLVLLDELGRG 90 (185)
T ss_pred eEEEEecCCCC
Confidence 89999998643
No 441
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=95.72 E-value=0.046 Score=56.71 Aligned_cols=28 Identities=21% Similarity=0.450 Sum_probs=23.6
Q ss_pred CCCCCeEecCCCCcHHHHHHHHHHHHHh
Q 007723 310 TKNNPILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 310 ~~~~ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
....+.|+|+||+||||++..++..+..
T Consensus 33 ~~~~i~i~G~~G~GKttl~~~l~~~~~~ 60 (300)
T TIGR00750 33 NAHRVGITGTPGAGKSTLLEALGMELRR 60 (300)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3455678999999999999999998754
No 442
>PRK05629 hypothetical protein; Validated
Probab=95.72 E-value=0.61 Score=48.69 Aligned_cols=114 Identities=5% Similarity=-0.050 Sum_probs=74.0
Q ss_pred HHHHccCcceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhhhcCCCcHHHHHHHHHHhhHhhhhhh
Q 007723 443 KALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELF 522 (591)
Q Consensus 443 ~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i~~~~lp~~ai~lld~a~a~~~~~~~ 522 (591)
..|......+.+.+|...+....+...+.+ +|+.|+++++++++......+.. ..+-++.-+.. .+.
T Consensus 112 K~l~k~~~~ve~~~~~~~~l~~wi~~~~~~----~g~~i~~~A~~~L~~~~g~dl~~------l~~EleKL~~~---~~~ 178 (318)
T PRK05629 112 PKLEKIAVVHEAAKLKPRERPGWVTQEFKN----HGVRPTPDVVHALLEGVGSDLRE------LASAISQLVED---TQG 178 (318)
T ss_pred HHHHhcceEeeCCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHHCccHHH------HHHHHHHHHhc---CCC
Confidence 356666667888888888877777665554 49999999999999988654332 22233322210 111
Q ss_pred ccchhhhhhhh-cCChHHHHHHHHHHhhcchHHHHhhchhhHhhhccCC
Q 007723 523 KRKKEQQTCIL-SKPPDDYWQEIRTVQAMHEVVQGSRLKYDDVVASMGD 570 (591)
Q Consensus 523 ~~~~~~~i~~l-~~~~~~~~~~~~~~~~~~d~~~a~~~~~~~~~~~~~~ 570 (591)
.. ..+.|.++ ...++.-.+....++..+|..+|..+.+.....+.++
T Consensus 179 ~I-t~e~V~~~v~~~~~~~iF~l~dAv~~g~~~~Al~~l~~l~~~g~~p 226 (318)
T PRK05629 179 NV-TVEKVRAYYVGVAEVSGFDIADLACAGQVSKAVASTRRALQLGVSP 226 (318)
T ss_pred Cc-CHHHHHHHhCCCccchHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 11 22345554 4445567788889999999999999887665554443
No 443
>PRK10263 DNA translocase FtsK; Provisional
Probab=95.72 E-value=0.056 Score=64.79 Aligned_cols=100 Identities=14% Similarity=0.151 Sum_probs=60.4
Q ss_pred eEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccC---CcEEEEecCChhHHHhhhcccHHHHccCc-ceeecCCCH
Q 007723 384 VILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR---GELQCIASTTQDEHRTQFEKDKALARRFQ-PVLISEPSQ 459 (591)
Q Consensus 384 ~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~---g~v~lI~att~~e~~~~~~~d~aL~~Rf~-~i~i~~p~~ 459 (591)
.||+|||+..|+... ..++.+.|..+... -.+.+|.+|.... .-.+...++.-|. +|-+..-+.
T Consensus 1142 IVVIIDE~AdLm~~~---------~kevE~lI~rLAqkGRAaGIHLILATQRPs---vDVItg~IKAN~ptRIAfrVsS~ 1209 (1355)
T PRK10263 1142 IVVLVDEFADLMMTV---------GKKVEELIARLAQKARAAGIHLVLATQRPS---VDVITGLIKANIPTRIAFTVSSK 1209 (1355)
T ss_pred EEEEEcChHHHHhhh---------hHHHHHHHHHHHHHhhhcCeEEEEEecCcc---cccchHHHHhhccceEEEEcCCH
Confidence 589999998886431 23344444444433 2578888876653 1123455666665 577777777
Q ss_pred HHHHHHHHHH-HHHHH----------------hhcCCCCcHHHHHHHHHHhHH
Q 007723 460 EDAVRILLGL-REKYE----------------AHHNCKFTLEAINAAVHLSAR 495 (591)
Q Consensus 460 ~e~~~iL~~~-~~~~~----------------~~~~i~i~~~al~~l~~~s~r 495 (591)
.+...||-.- ++.+. .-++..++++-++.++.+.+.
T Consensus 1210 ~DSrtILd~~GAE~LlG~GDmL~~~~g~~~p~RvqgafvsD~Ei~~vv~~~k~ 1262 (1355)
T PRK10263 1210 IDSRTILDQAGAESLLGMGDMLYSGPNSTLPVRVHGAFVRDQEVHAVVQDWKA 1262 (1355)
T ss_pred HHHHHhcCCcchhhccCCccEEEecCCCCceeEEEeccCCHHHHHHHHHHHHh
Confidence 7777777442 12111 123456888888888887654
No 444
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.71 E-value=0.0091 Score=59.36 Aligned_cols=23 Identities=39% Similarity=0.567 Sum_probs=21.4
Q ss_pred CCeEecCCCCcHHHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l 335 (591)
.++|+||||+||||+++.|++.+
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999976
No 445
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.69 E-value=0.043 Score=53.85 Aligned_cols=26 Identities=35% Similarity=0.443 Sum_probs=22.2
Q ss_pred CCCeEecCCCCcHHHHHHHHHHHHHh
Q 007723 312 NNPILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
.-++++|+||+|||+++..++..+..
T Consensus 20 ~i~~i~G~~GsGKT~l~~~~a~~~~~ 45 (218)
T cd01394 20 TVTQVYGPPGTGKTNIAIQLAVETAG 45 (218)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 34679999999999999999988753
No 446
>PRK14709 hypothetical protein; Provisional
Probab=95.69 E-value=0.056 Score=59.47 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=20.4
Q ss_pred CeEecCCCCcHHHHHHHHHHHHH
Q 007723 314 PILLGESGVGKTAIAEGLAIRIV 336 (591)
Q Consensus 314 ilL~GppGvGKT~la~~lA~~l~ 336 (591)
++|+|+.|.|||++.+.|...+.
T Consensus 208 ~~l~G~G~NGKSt~~~~i~~llG 230 (469)
T PRK14709 208 VFVFGGGGNGKSVFLNVLAGILG 230 (469)
T ss_pred EEEECCCCCcHHHHHHHHHHHHh
Confidence 57889999999999999988773
No 447
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.67 E-value=0.016 Score=58.21 Aligned_cols=28 Identities=25% Similarity=0.268 Sum_probs=23.7
Q ss_pred cCCCCCeEecCCCCcHHHHHHHHHHHHH
Q 007723 309 RTKNNPILLGESGVGKTAIAEGLAIRIV 336 (591)
Q Consensus 309 ~~~~~ilL~GppGvGKT~la~~lA~~l~ 336 (591)
..+..+-|+|++||||||+++.+.+.+.
T Consensus 37 ~~ge~~glVGESG~GKSTlgr~i~~L~~ 64 (268)
T COG4608 37 KEGETLGLVGESGCGKSTLGRLILGLEE 64 (268)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHcCcC
Confidence 3456678999999999999999998763
No 448
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=95.67 E-value=0.033 Score=62.93 Aligned_cols=26 Identities=31% Similarity=0.543 Sum_probs=21.8
Q ss_pred CCCeEecCCCCcHHHHHHHHHHHHHh
Q 007723 312 NNPILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
+-.+|.|+|||||||++..+...+..
T Consensus 161 ~~~vitGgpGTGKTt~v~~ll~~l~~ 186 (586)
T TIGR01447 161 NFSLITGGPGTGKTTTVARLLLALVK 186 (586)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 45689999999999999998877643
No 449
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=95.65 E-value=0.022 Score=64.22 Aligned_cols=47 Identities=15% Similarity=0.139 Sum_probs=32.7
Q ss_pred CCccCCcHHHHHHHHHHHHhcCCCCCeEecCCCCcHHHHHHHHHHHHH
Q 007723 289 IDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIV 336 (591)
Q Consensus 289 ~~~vvG~~~~i~~l~~~L~~~~~~~ilL~GppGvGKT~la~~lA~~l~ 336 (591)
|+++--.++.+..+..++. .....++++||+|+||||+..++...+.
T Consensus 295 l~~lg~~~~~~~~l~~~~~-~~~Glilv~G~tGSGKTTtl~a~l~~~~ 341 (564)
T TIGR02538 295 IDKLGFEPDQKALFLEAIH-KPQGMVLVTGPTGSGKTVSLYTALNILN 341 (564)
T ss_pred HHHcCCCHHHHHHHHHHHH-hcCCeEEEECCCCCCHHHHHHHHHHhhC
Confidence 4443334445556655553 4456788999999999999998888774
No 450
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.65 E-value=0.034 Score=52.54 Aligned_cols=26 Identities=27% Similarity=0.264 Sum_probs=22.2
Q ss_pred CCCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 310 TKNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 310 ~~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
.+..+.|+||+|+|||||++.|+..+
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34567899999999999999998764
No 451
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.65 E-value=0.066 Score=54.44 Aligned_cols=87 Identities=21% Similarity=0.373 Sum_probs=54.0
Q ss_pred HHHHHHHHhcCCCC-Ce-EecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhcccc---------------
Q 007723 300 QRIIQILCRRTKNN-PI-LLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAK--------------- 362 (591)
Q Consensus 300 ~~l~~~L~~~~~~~-il-L~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~~--------------- 362 (591)
..++..+....++. ++ |+|+||+|||||+.+|...+..... ...++.+|.++-..|..
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~-----rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~ 112 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGH-----RVAVLAVDPSSPFTGGSILGDRIRMQRLAVDP 112 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCc-----EEEEEEECCCCCCCCccccccHhhHHhhccCC
Confidence 34555555544433 44 8999999999999999999865431 23455666554432221
Q ss_pred -----------ccchHHHHHHHHHHHHHhcCCeEEEEcCc
Q 007723 363 -----------ERGELEARVTTLISEIQKSGDVILFIDEV 391 (591)
Q Consensus 363 -----------~~g~~~~~i~~i~~~~~~~~~~ILfIDEi 391 (591)
..|......++++.-+...+.-++||.=+
T Consensus 113 ~vFiRs~~srG~lGGlS~at~~~i~~ldAaG~DvIIVETV 152 (323)
T COG1703 113 GVFIRSSPSRGTLGGLSRATREAIKLLDAAGYDVIIVETV 152 (323)
T ss_pred CeEEeecCCCccchhhhHHHHHHHHHHHhcCCCEEEEEec
Confidence 22455566666666666666667776643
No 452
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=95.64 E-value=0.066 Score=60.80 Aligned_cols=27 Identities=26% Similarity=0.476 Sum_probs=22.1
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHHHh
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
.+-.+|.|+|||||||++..+...+..
T Consensus 167 ~~~~vItGgpGTGKTt~v~~ll~~l~~ 193 (615)
T PRK10875 167 RRISVISGGPGTGKTTTVAKLLAALIQ 193 (615)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 345789999999999999988777643
No 453
>PRK10436 hypothetical protein; Provisional
Probab=95.64 E-value=0.055 Score=59.31 Aligned_cols=49 Identities=14% Similarity=0.152 Sum_probs=32.4
Q ss_pred CCCccCCcHHHHHHHHHHHHhcCCCCCeEecCCCCcHHHHHHHHHHHHHh
Q 007723 288 LIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 288 ~~~~vvG~~~~i~~l~~~L~~~~~~~ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
+|+++--.+..+..+..++. .....++++||.|+||||...++...+..
T Consensus 196 ~L~~LG~~~~~~~~l~~~~~-~~~GliLvtGpTGSGKTTtL~a~l~~~~~ 244 (462)
T PRK10436 196 DLETLGMTPAQLAQFRQALQ-QPQGLILVTGPTGSGKTVTLYSALQTLNT 244 (462)
T ss_pred CHHHcCcCHHHHHHHHHHHH-hcCCeEEEECCCCCChHHHHHHHHHhhCC
Confidence 34443223334555555543 44567889999999999999888777643
No 454
>PRK06585 holA DNA polymerase III subunit delta; Reviewed
Probab=95.64 E-value=0.72 Score=48.63 Aligned_cols=216 Identities=12% Similarity=0.027 Sum_probs=115.4
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhccccccchHHHHHHHHHHHHHh----cCCeEE
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVIL 386 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~~----~~~~IL 386 (591)
.+-.+|||+-.-.....++.+.+.+.... ..+..+..++..+.. .+ +..+++.+.. +++.++
T Consensus 20 ~~~yll~G~e~~li~~~~~~l~~~~~~~~----~~~fn~~~~~~~e~~------~~----~~~~~~~~~t~slF~~~rlV 85 (343)
T PRK06585 20 IRAVLLYGPDRGLVRERARRLAKSVVPDL----DDPFAVVRLDGDDLD------AD----PARLEDEANAISLFGGRRLI 85 (343)
T ss_pred CeEEEEeCCchHHHHHHHHHHHHHhcCCC----CCCcceeeccHHHhh------cC----HHHHHHHHhCCCCCCCceEE
Confidence 34568999998777777777776653211 112234444432211 01 3345555543 456688
Q ss_pred EEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCCcEEEEecCChhHHHhhhcccHHHH--ccCcceeecCCCHHHHHH
Q 007723 387 FIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALA--RRFQPVLISEPSQEDAVR 464 (591)
Q Consensus 387 fIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g~v~lI~att~~e~~~~~~~d~aL~--~Rf~~i~i~~p~~~e~~~ 464 (591)
+|.+...- ....+.+.+... ....+.++.+...+. ++ .+-..+. .....+.+.+|+..++..
T Consensus 86 iv~~~~~~------------~~~~L~~~l~~~-~~~~~lil~~~~~~~-~~--kl~k~~~~~~~~~~v~~~~~~~~~l~~ 149 (343)
T PRK06585 86 WVRAGSKN------------LAAALKALLESP-PGDAFIVIEAGDLKK-GS--SLRKLFETAAYAAAIPCYADDERDLAR 149 (343)
T ss_pred EEECCchh------------HHHHHHHHHcCC-CCCcEEEEEcCCCCc-cc--HHHHHHhcCCCeeEEecCCCCHHHHHH
Confidence 88843211 122233333322 233444443322111 00 0111221 122346777888888888
Q ss_pred HHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhhhcCCCcHHHHHHHHHHhhHhhhhhhc-cchhhhhhhhcCC-hHHHHH
Q 007723 465 ILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFK-RKKEQQTCILSKP-PDDYWQ 542 (591)
Q Consensus 465 iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i~~~~lp~~ai~lld~a~a~~~~~~~~-~~~~~~i~~l~~~-~~~~~~ 542 (591)
.+...+.. +|+.|++++++.++..+...+.. +.+-|+.-+... +.. ....+.|.++... .+...+
T Consensus 150 ~i~~~~~~----~g~~i~~~a~~~L~~~~g~dl~~------l~~EleKL~ly~---~~~~~It~edV~~lv~~~~e~~if 216 (343)
T PRK06585 150 LIDDELAE----AGLRITPDARALLVALLGGDRLA------SRNEIEKLALYA---HGKGEITLDDVRAVVGDASALSLD 216 (343)
T ss_pred HHHHHHHH----CCCCCCHHHHHHHHHHhCCCHHH------HHHHHHHHHHhc---CCCCCCCHHHHHHHhCCcccccHH
Confidence 88666654 49999999999999998754332 344444433211 111 1122344444333 444677
Q ss_pred HHHHHhhcchHHHHhhchhhHhhhccC
Q 007723 543 EIRTVQAMHEVVQGSRLKYDDVVASMG 569 (591)
Q Consensus 543 ~~~~~~~~~d~~~a~~~~~~~~~~~~~ 569 (591)
+...++..+|..+|.++.+.....+.+
T Consensus 217 ~l~dai~~~~~~~a~~~l~~ll~~g~~ 243 (343)
T PRK06585 217 DAADAALAGDLAAFERALDRALAEGTA 243 (343)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 788899999999998887766554443
No 455
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.63 E-value=0.033 Score=51.67 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=21.6
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
...+.|+|++|+|||||++.|+..+
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~ 49 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLL 49 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4567899999999999999998765
No 456
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.63 E-value=0.11 Score=48.60 Aligned_cols=27 Identities=33% Similarity=0.357 Sum_probs=22.5
Q ss_pred CCeEecCCCCcHHHHHHHHHHHHHhCC
Q 007723 313 NPILLGESGVGKTAIAEGLAIRIVQAE 339 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l~~~~ 339 (591)
-+.+|+++|.|||++|-+++.+....+
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g 30 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHG 30 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 466888889999999999999876543
No 457
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=95.63 E-value=0.04 Score=62.13 Aligned_cols=62 Identities=24% Similarity=0.327 Sum_probs=42.7
Q ss_pred hchhcccccccCC-CCccCCcHHHHHHHHHHHHhcCC--CCCeEecCCCCcHHHHHHHHHHHHHh
Q 007723 276 FCVDLTARASEEL-IDPVIGRETEIQRIIQILCRRTK--NNPILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 276 ~~~~l~~~~r~~~-~~~vvG~~~~i~~l~~~L~~~~~--~~ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
-++.+-+.++.|. ..+.+-+.+..+-|.+....+.+ ..++|+|.+|+||||+++.|+..+..
T Consensus 354 sgt~ir~~l~~G~~pP~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 354 SGTELRRRLREGLEIPEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred CHHHHHHHHHCCCCCChhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 3555556666654 34566677666655555444333 35678899999999999999999853
No 458
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.63 E-value=0.0081 Score=57.25 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=21.3
Q ss_pred CCCeEecCCCCcHHHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~l 335 (591)
+-++|+|+||+||||+++.|+..+
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999876
No 459
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=95.62 E-value=0.026 Score=57.90 Aligned_cols=22 Identities=32% Similarity=0.575 Sum_probs=20.4
Q ss_pred CeEecCCCCcHHHHHHHHHHHH
Q 007723 314 PILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 314 ilL~GppGvGKT~la~~lA~~l 335 (591)
++++||+|+|||+++..|++.+
T Consensus 2 i~i~G~t~~GKs~la~~l~~~~ 23 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQLAKKL 23 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 5789999999999999999876
No 460
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.61 E-value=0.077 Score=58.59 Aligned_cols=27 Identities=33% Similarity=0.425 Sum_probs=23.0
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHHHh
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
+..++|+||+|+||||++..|+..+..
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~ 376 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAA 376 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 456789999999999999999987643
No 461
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.61 E-value=0.034 Score=54.99 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=20.2
Q ss_pred CCCCeEecCCCCcHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAI 333 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~ 333 (591)
...++|+||.|.|||++.+.++.
T Consensus 31 g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 31 GYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34568999999999999999987
No 462
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.61 E-value=0.05 Score=51.45 Aligned_cols=21 Identities=33% Similarity=0.450 Sum_probs=18.9
Q ss_pred CeEecCCCCcHHHHHHHHHHH
Q 007723 314 PILLGESGVGKTAIAEGLAIR 334 (591)
Q Consensus 314 ilL~GppGvGKT~la~~lA~~ 334 (591)
++++|++|+|||++|..++..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~ 22 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE 22 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 578999999999999999875
No 463
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=95.61 E-value=0.023 Score=62.33 Aligned_cols=79 Identities=16% Similarity=0.258 Sum_probs=45.9
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhh---------cccccc---chHHHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM---------AGAKER---GELEARVTTLISEI 378 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~---------~g~~~~---g~~~~~i~~i~~~~ 378 (591)
..-++|.|+||+|||+|+..++..+... +.++++++..+.. .|.... --.+..+..+...+
T Consensus 94 GsvilI~G~pGsGKTTL~lq~a~~~a~~-------g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i 166 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQVACQLAKN-------QMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANI 166 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHhc-------CCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHH
Confidence 3456889999999999999998877542 2234444332111 000000 00001134455555
Q ss_pred HhcCCeEEEEcCcchhhc
Q 007723 379 QKSGDVILFIDEVHTLIG 396 (591)
Q Consensus 379 ~~~~~~ILfIDEi~~L~~ 396 (591)
.+.+..+++||.+..+..
T Consensus 167 ~~~~~~~vVIDSIq~l~~ 184 (454)
T TIGR00416 167 EEENPQACVIDSIQTLYS 184 (454)
T ss_pred HhcCCcEEEEecchhhcc
Confidence 556778999999998853
No 464
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.59 E-value=0.075 Score=50.49 Aligned_cols=24 Identities=33% Similarity=0.379 Sum_probs=20.6
Q ss_pred CCCeEecCCCCcHHHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~l 335 (591)
.-++|.||+|+||||+++.|-...
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 346799999999999999998754
No 465
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.56 E-value=0.031 Score=55.43 Aligned_cols=24 Identities=33% Similarity=0.563 Sum_probs=20.3
Q ss_pred CCCeEecCCCCcHHHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~l 335 (591)
.-+.|+||||+|||+++..++...
T Consensus 20 ~i~~i~G~~GsGKT~l~~~l~~~~ 43 (235)
T cd01123 20 SITEIFGEFGSGKTQLCHQLAVTV 43 (235)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHe
Confidence 345799999999999999998654
No 466
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=95.56 E-value=0.024 Score=61.44 Aligned_cols=63 Identities=22% Similarity=0.390 Sum_probs=38.2
Q ss_pred EecCCCCcHHHHHHHHHHHHHhCCCCccc--------cCceEEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEE
Q 007723 316 LLGESGVGKTAIAEGLAIRIVQAEVPVFL--------LSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILF 387 (591)
Q Consensus 316 L~GppGvGKT~la~~lA~~l~~~~~p~~~--------~~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILf 387 (591)
++||||||||||++.+.+++....+...- ...++..+.+ ..-+..+++-++-+.-++|+
T Consensus 74 vvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvsgK~RRiTflEc-------------p~Dl~~miDvaKIaDLVlLl 140 (1077)
T COG5192 74 VVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSGKTRRITFLEC-------------PSDLHQMIDVAKIADLVLLL 140 (1077)
T ss_pred eecCCCCChhHHHHHHHHHHHHhhhhccCCceEEeecceeEEEEEeC-------------hHHHHHHHhHHHhhheeEEE
Confidence 67999999999999999987543221110 0122222221 12255566655556677888
Q ss_pred EcCc
Q 007723 388 IDEV 391 (591)
Q Consensus 388 IDEi 391 (591)
||--
T Consensus 141 Idgn 144 (1077)
T COG5192 141 IDGN 144 (1077)
T ss_pred eccc
Confidence 8854
No 467
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.55 E-value=0.091 Score=53.67 Aligned_cols=26 Identities=35% Similarity=0.520 Sum_probs=22.4
Q ss_pred CCCeEecCCCCcHHHHHHHHHHHHHh
Q 007723 312 NNPILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
.-++|+||+|+||||++..||..+..
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l~~ 98 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKLKK 98 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 45678899999999999999988754
No 468
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.55 E-value=0.022 Score=60.19 Aligned_cols=78 Identities=19% Similarity=0.334 Sum_probs=51.0
Q ss_pred CCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhcccccc------------chHHHHHHHHHHHHHh
Q 007723 313 NPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKER------------GELEARVTTLISEIQK 380 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~~~~------------g~~~~~i~~i~~~~~~ 380 (591)
-+|+-|+||.|||||.-.++..+... . ++.++...+-....+.+ --.+-.+..++..+.+
T Consensus 95 ~iLIgGdPGIGKSTLLLQva~~lA~~-------~-~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~ 166 (456)
T COG1066 95 VILIGGDPGIGKSTLLLQVAARLAKR-------G-KVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQ 166 (456)
T ss_pred EEEEccCCCCCHHHHHHHHHHHHHhc-------C-cEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHh
Confidence 34566999999999999999888642 2 44554432211100000 0123346778888888
Q ss_pred cCCeEEEEcCcchhhcCC
Q 007723 381 SGDVILFIDEVHTLIGSG 398 (591)
Q Consensus 381 ~~~~ILfIDEi~~L~~~~ 398 (591)
.++.+++||=|+.+....
T Consensus 167 ~~p~lvVIDSIQT~~s~~ 184 (456)
T COG1066 167 EKPDLVVIDSIQTLYSEE 184 (456)
T ss_pred cCCCEEEEeccceeeccc
Confidence 889999999999997543
No 469
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.54 E-value=0.018 Score=63.87 Aligned_cols=80 Identities=20% Similarity=0.260 Sum_probs=48.6
Q ss_pred CCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEee------------------hhhhhc-c-------ccc
Q 007723 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD------------------MGLLMA-G-------AKE 363 (591)
Q Consensus 310 ~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld------------------~~~l~~-g-------~~~ 363 (591)
....+++.||||+|||+|+..++...+..+ .+++++. ...+.. | ...
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~~g-------e~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~ 334 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACANK-------ERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPE 334 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHCC-------CeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccc
Confidence 345678999999999999999988765432 1122221 111100 0 000
Q ss_pred cchHHHHHHHHHHHHHhcCCeEEEEcCcchhhc
Q 007723 364 RGELEARVTTLISEIQKSGDVILFIDEVHTLIG 396 (591)
Q Consensus 364 ~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~ 396 (591)
....+..+..+.+.+.+.+..+++||=+..+..
T Consensus 335 ~~~~~~~~~~i~~~i~~~~~~~vvIDsi~~~~~ 367 (484)
T TIGR02655 335 SAGLEDHLQIIKSEIADFKPARIAIDSLSALAR 367 (484)
T ss_pred cCChHHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 112245566677777666778999999998743
No 470
>PF13479 AAA_24: AAA domain
Probab=95.54 E-value=0.012 Score=57.81 Aligned_cols=21 Identities=33% Similarity=0.556 Sum_probs=18.3
Q ss_pred CCCCeEecCCCCcHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGL 331 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~l 331 (591)
+-.++|||+||+|||+++..+
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC
Confidence 346799999999999999877
No 471
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.53 E-value=0.0093 Score=55.77 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=19.8
Q ss_pred CCeEecCCCCcHHHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l 335 (591)
.++++|.|||||||+++.|+ .+
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~l 23 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-EL 23 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-Hh
Confidence 47899999999999999999 55
No 472
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=95.53 E-value=0.049 Score=52.10 Aligned_cols=24 Identities=38% Similarity=0.499 Sum_probs=21.2
Q ss_pred CCCeEecCCCCcHHHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~l 335 (591)
..++|+||+|+||++++..|....
T Consensus 3 r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 3 RPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred cEEEEECCCCCCHHHHHHHHHhcC
Confidence 457899999999999999998864
No 473
>PRK14528 adenylate kinase; Provisional
Probab=95.53 E-value=0.011 Score=56.84 Aligned_cols=24 Identities=38% Similarity=0.553 Sum_probs=21.6
Q ss_pred CCCeEecCCCCcHHHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~l 335 (591)
.++++.||||+||||+++.|+..+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999999876
No 474
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.52 E-value=0.053 Score=58.27 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.4
Q ss_pred CCeEecCCCCcHHHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l 335 (591)
-++|+||+|+||||++..||...
T Consensus 225 vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 225 VVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999765
No 475
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.50 E-value=0.14 Score=55.60 Aligned_cols=25 Identities=28% Similarity=0.383 Sum_probs=21.9
Q ss_pred CCCeEecCCCCcHHHHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIRIV 336 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~l~ 336 (591)
.-++|+|++|+||||++..+|..+.
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHH
Confidence 3467999999999999999999874
No 476
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.49 E-value=0.018 Score=52.45 Aligned_cols=22 Identities=36% Similarity=0.545 Sum_probs=20.1
Q ss_pred CeEecCCCCcHHHHHHHHHHHH
Q 007723 314 PILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 314 ilL~GppGvGKT~la~~lA~~l 335 (591)
++|+||+|+|||++++.|++.+
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcC
Confidence 5789999999999999999875
No 477
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.49 E-value=0.04 Score=55.02 Aligned_cols=25 Identities=24% Similarity=0.407 Sum_probs=22.0
Q ss_pred CeEecCCCCcHHHHHHHHHHHHHhC
Q 007723 314 PILLGESGVGKTAIAEGLAIRIVQA 338 (591)
Q Consensus 314 ilL~GppGvGKT~la~~lA~~l~~~ 338 (591)
-+|+||||+|||+|+..+|..+..+
T Consensus 4 ~ll~g~~G~GKS~lal~la~~va~G 28 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALAMALG 28 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHHHhcC
Confidence 3799999999999999999887654
No 478
>PRK05973 replicative DNA helicase; Provisional
Probab=95.47 E-value=0.036 Score=55.30 Aligned_cols=27 Identities=26% Similarity=0.342 Sum_probs=22.4
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHHHh
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
+.-+++.|+||+|||+++..++.....
T Consensus 64 Gsl~LIaG~PG~GKT~lalqfa~~~a~ 90 (237)
T PRK05973 64 GDLVLLGARPGHGKTLLGLELAVEAMK 90 (237)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 445688899999999999999887643
No 479
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=95.46 E-value=0.028 Score=58.30 Aligned_cols=23 Identities=39% Similarity=0.554 Sum_probs=21.0
Q ss_pred CCeEecCCCCcHHHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l 335 (591)
-++++||+|+|||+++..||+.+
T Consensus 6 ~i~i~GptgsGKt~la~~la~~~ 28 (307)
T PRK00091 6 VIVIVGPTASGKTALAIELAKRL 28 (307)
T ss_pred EEEEECCCCcCHHHHHHHHHHhC
Confidence 46789999999999999999986
No 480
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.46 E-value=0.03 Score=58.35 Aligned_cols=77 Identities=17% Similarity=0.151 Sum_probs=45.4
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehh----------------hhhccccccchHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMG----------------LLMAGAKERGELEARVTTL 374 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~----------------~l~~g~~~~g~~~~~i~~i 374 (591)
..-+.|+||||+|||+|+..++...... +..++.+|.. .++.-. ....++.+..+
T Consensus 55 G~iteI~G~~GsGKTtLaL~~~~~~~~~-------g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~--p~~~eq~l~~~ 125 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALHAIAEAQKA-------GGTAAFIDAEHALDPVYARKLGVDIDNLLVSQ--PDTGEQALEIA 125 (321)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc-------CCcEEEEcccchhHHHHHHHcCCCHHHeEEec--CCCHHHHHHHH
Confidence 3456799999999999998887766442 2333344332 222111 11233333333
Q ss_pred HHHHHhcCCeEEEEcCcchhhc
Q 007723 375 ISEIQKSGDVILFIDEVHTLIG 396 (591)
Q Consensus 375 ~~~~~~~~~~ILfIDEi~~L~~ 396 (591)
...++.....++|||-+..|..
T Consensus 126 ~~li~~~~~~lIVIDSv~al~~ 147 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVAALVP 147 (321)
T ss_pred HHHhhccCCcEEEEcchhhhcc
Confidence 2333345677999999998864
No 481
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.44 E-value=0.0099 Score=56.43 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=20.8
Q ss_pred CCeEecCCCCcHHHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l 335 (591)
-++|+||+|+||||+++.|+..+
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 36799999999999999999876
No 482
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=95.43 E-value=0.012 Score=54.23 Aligned_cols=20 Identities=45% Similarity=0.620 Sum_probs=18.8
Q ss_pred EecCCCCcHHHHHHHHHHHH
Q 007723 316 LLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 316 L~GppGvGKT~la~~lA~~l 335 (591)
|+||||+||||+++.||...
T Consensus 1 i~G~PgsGK~t~~~~la~~~ 20 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY 20 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhc
Confidence 68999999999999999976
No 483
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.42 E-value=0.05 Score=49.92 Aligned_cols=26 Identities=23% Similarity=0.373 Sum_probs=21.9
Q ss_pred CCCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 310 TKNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 310 ~~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
.+..+.|.||+|+|||||++.++...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 34557899999999999999998765
No 484
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=95.40 E-value=0.24 Score=57.99 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=21.0
Q ss_pred CCCeEecCCCCcHHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIR 334 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~ 334 (591)
..++|+||.|.||||+.+.++..
T Consensus 323 ~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 323 RVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred eEEEEECCCCCCchHHHHHHHHH
Confidence 56789999999999999999877
No 485
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=95.39 E-value=0.027 Score=67.31 Aligned_cols=27 Identities=19% Similarity=0.278 Sum_probs=22.3
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHHHh
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
.+-.+|+|++||||||+++.+...+..
T Consensus 397 ~r~~~v~G~AGTGKTt~l~~~~~~~e~ 423 (1102)
T PRK13826 397 ARIAAVVGRAGAGKTTMMKAAREAWEA 423 (1102)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 345689999999999999999887643
No 486
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=95.39 E-value=0.02 Score=59.65 Aligned_cols=25 Identities=32% Similarity=0.563 Sum_probs=22.9
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
..+++|+|.+|+|||++++.|+..+
T Consensus 133 ~~~I~l~G~~GsGKStvg~~La~~L 157 (309)
T PRK08154 133 RRRIALIGLRGAGKSTLGRMLAARL 157 (309)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHc
Confidence 4678899999999999999999988
No 487
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.39 E-value=0.04 Score=51.98 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=22.5
Q ss_pred CCCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 310 TKNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 310 ~~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
.+..+.|+||+|+|||||.+.|+..+
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 45567899999999999999998865
No 488
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=95.38 E-value=0.047 Score=59.74 Aligned_cols=157 Identities=14% Similarity=0.165 Sum_probs=83.9
Q ss_pred ccCCcHHHHHHHHHHHHhc------------CCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhh
Q 007723 291 PVIGRETEIQRIIQILCRR------------TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM 358 (591)
Q Consensus 291 ~vvG~~~~i~~l~~~L~~~------------~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~ 358 (591)
.+.|++...+.|.-+|..+ ..-|+|++|.|-|-|+.|.+.+.+.... .++..-++..-+-+..+ +
T Consensus 302 SI~GH~~vKkAillLLlGGvEk~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntApl-AI~TTGRGSSGVGLTAA--V 378 (818)
T KOG0479|consen 302 SIYGHDYVKKAILLLLLGGVEKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPL-AIATTGRGSSGVGLTAA--V 378 (818)
T ss_pred ccccHHHHHHHHHHHHhccceeccCCCceeccceeEEEecCchHHHHHHHHHHHhcccc-cccccCCCCCCccceeE--E
Confidence 4778887777766555431 1247899999999999999998764311 11111112111111111 1
Q ss_pred ccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCC---------------c
Q 007723 359 AGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG---------------E 423 (591)
Q Consensus 359 ~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g---------------~ 423 (591)
...+..| |.++.. ..+--+..+|++|||+|.+... ..- ++-.+|+.+ +
T Consensus 379 TtD~eTG--ERRLEA--GAMVLADRGVVCIDEFDKMsDi----------DRv---AIHEVMEQqtVTIaKAGIHasLNAR 441 (818)
T KOG0479|consen 379 TTDQETG--ERRLEA--GAMVLADRGVVCIDEFDKMSDI----------DRV---AIHEVMEQQTVTIAKAGIHASLNAR 441 (818)
T ss_pred eeccccc--hhhhhc--CceEEccCceEEehhcccccch----------hHH---HHHHHHhcceEEeEeccchhhhccc
Confidence 1112222 222211 0011156789999999999322 211 222334333 4
Q ss_pred EEEEecCChhHHH---------hhhcccHHHHccCcc--eeecCCCHHHHHHHHHH
Q 007723 424 LQCIASTTQDEHR---------TQFEKDKALARRFQP--VLISEPSQEDAVRILLG 468 (591)
Q Consensus 424 v~lI~att~~e~~---------~~~~~d~aL~~Rf~~--i~i~~p~~~e~~~iL~~ 468 (591)
+-+++|.||- |. +.+.+...|++||+. |.+...+.+....|-.+
T Consensus 442 CSVlAAANPv-yG~Yd~~k~P~eNIgLpDSLLSRFDLlFv~lD~~d~~~D~~iSeH 496 (818)
T KOG0479|consen 442 CSVLAAANPV-YGQYDQSKTPMENIGLPDSLLSRFDLLFVVLDDIDADIDRMISEH 496 (818)
T ss_pred eeeeeecCcc-ccccCCCCChhhccCCcHHHHhhhcEEEEEeccccchHHHHHHHH
Confidence 5678888763 21 234567899999994 55555555444444333
No 489
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.38 E-value=0.039 Score=65.79 Aligned_cols=28 Identities=29% Similarity=0.313 Sum_probs=24.2
Q ss_pred cCCCCCeEecCCCCcHHHHHHHHHHHHH
Q 007723 309 RTKNNPILLGESGVGKTAIAEGLAIRIV 336 (591)
Q Consensus 309 ~~~~~ilL~GppGvGKT~la~~lA~~l~ 336 (591)
+.+..+.|+||+||||||++..|.+...
T Consensus 377 ~~G~~valVG~SGsGKST~i~LL~Rfyd 404 (1228)
T KOG0055|consen 377 PSGQTVALVGPSGSGKSTLIQLLARFYD 404 (1228)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4556788999999999999999998763
No 490
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=95.37 E-value=0.019 Score=52.44 Aligned_cols=21 Identities=43% Similarity=0.642 Sum_probs=19.1
Q ss_pred CCeEecCCCCcHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAI 333 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~ 333 (591)
.++|+|+.|+|||||+++|-.
T Consensus 3 rimliG~~g~GKTTL~q~L~~ 23 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNG 23 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcC
Confidence 479999999999999999865
No 491
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.37 E-value=0.059 Score=51.29 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=18.9
Q ss_pred CCCCeEecCCCCcHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLA 332 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA 332 (591)
+.-+.|+||+|+|||||.+.+.
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3456799999999999999985
No 492
>PHA01747 putative ATP-dependent protease
Probab=95.36 E-value=0.041 Score=57.44 Aligned_cols=24 Identities=29% Similarity=0.185 Sum_probs=18.9
Q ss_pred CCCCCeEecCCCCcHHHHHHHHHH
Q 007723 310 TKNNPILLGESGVGKTAIAEGLAI 333 (591)
Q Consensus 310 ~~~~ilL~GppGvGKT~la~~lA~ 333 (591)
..-|++=.||+|||||++-+.+..
T Consensus 189 ~NyNliELgPRGTGKS~~f~eis~ 212 (425)
T PHA01747 189 RPVHIIELSNRGTGKTTTFVILQE 212 (425)
T ss_pred CCeeEEEecCCCCChhhHHHHhhh
Confidence 344566679999999999998754
No 493
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.36 E-value=0.14 Score=48.53 Aligned_cols=28 Identities=32% Similarity=0.372 Sum_probs=23.7
Q ss_pred CCCeEecCCCCcHHHHHHHHHHHHHhCC
Q 007723 312 NNPILLGESGVGKTAIAEGLAIRIVQAE 339 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~l~~~~ 339 (591)
.-+.+++++|.||||.|-++|.+....+
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~g 33 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGHG 33 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHCC
Confidence 4567889999999999999999886644
No 494
>PLN02199 shikimate kinase
Probab=95.31 E-value=0.035 Score=56.83 Aligned_cols=27 Identities=22% Similarity=0.320 Sum_probs=24.4
Q ss_pred cCCCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 309 RTKNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 309 ~~~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
..+.+|+|+|.+|+|||++++.||+.+
T Consensus 100 l~~~~I~LIG~~GSGKSTVgr~LA~~L 126 (303)
T PLN02199 100 LNGRSMYLVGMMGSGKTTVGKLMSKVL 126 (303)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 346789999999999999999999987
No 495
>PLN02840 tRNA dimethylallyltransferase
Probab=95.29 E-value=0.034 Score=59.83 Aligned_cols=24 Identities=33% Similarity=0.490 Sum_probs=21.5
Q ss_pred CCeEecCCCCcHHHHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAIRIV 336 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l~ 336 (591)
-++|.||+|+|||+++..|++.+.
T Consensus 23 vi~I~GptgsGKTtla~~La~~~~ 46 (421)
T PLN02840 23 VIVISGPTGAGKSRLALELAKRLN 46 (421)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
Confidence 467889999999999999999873
No 496
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=95.29 E-value=0.074 Score=50.74 Aligned_cols=27 Identities=33% Similarity=0.369 Sum_probs=22.8
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHHHh
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
+.-++|.|+||+||||+++.|+..+..
T Consensus 18 ~~~i~i~G~~GsGKstla~~l~~~l~~ 44 (184)
T TIGR00455 18 GVVIWLTGLSGSGKSTIANALEKKLES 44 (184)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 344678899999999999999998743
No 497
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=95.28 E-value=0.032 Score=66.72 Aligned_cols=80 Identities=16% Similarity=0.172 Sum_probs=48.9
Q ss_pred CeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccC--------------CcEEEEecCChhHHHhhhcccHHHHcc
Q 007723 383 DVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--------------GELQCIASTTQDEHRTQFEKDKALARR 448 (591)
Q Consensus 383 ~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~--------------g~v~lI~att~~e~~~~~~~d~aL~~R 448 (591)
..|||.|||. |-....+ +.+++.-.|++++++ .++.+.|++|+..-..-......+.||
T Consensus 1564 ~lVLFcDeIn-Lp~~~~y------~~~~vI~FlR~l~e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~eRf~r~ 1636 (3164)
T COG5245 1564 DLVLFCDEIN-LPYGFEY------YPPTVIVFLRPLVERQGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYERFIRK 1636 (3164)
T ss_pred heEEEeeccC-Ccccccc------CCCceEEeeHHHHHhcccccchhhhHhhhcceEEEccCCCCCCcccCccHHHHhcC
Confidence 4699999998 4222121 122333344455553 257889999987422223334566666
Q ss_pred CcceeecCCCHHHHHHHHHHH
Q 007723 449 FQPVLISEPSQEDAVRILLGL 469 (591)
Q Consensus 449 f~~i~i~~p~~~e~~~iL~~~ 469 (591)
-..+.+..|....+..|....
T Consensus 1637 ~v~vf~~ype~~SL~~Iyea~ 1657 (3164)
T COG5245 1637 PVFVFCCYPELASLRNIYEAV 1657 (3164)
T ss_pred ceEEEecCcchhhHHHHHHHH
Confidence 666888999887777777653
No 498
>PRK04040 adenylate kinase; Provisional
Probab=95.28 E-value=0.012 Score=56.62 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=21.3
Q ss_pred CCeEecCCCCcHHHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l 335 (591)
.++++|+||+||||+++.+++.+
T Consensus 4 ~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 4 VVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHh
Confidence 46899999999999999999988
No 499
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=95.28 E-value=0.042 Score=54.10 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=19.9
Q ss_pred CCCeEecCCCCcHHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIR 334 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~ 334 (591)
.-++|+||.|+|||++.+.++..
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~~ 53 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVALI 53 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHHH
Confidence 44689999999999999999753
No 500
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=95.26 E-value=0.094 Score=49.78 Aligned_cols=35 Identities=31% Similarity=0.462 Sum_probs=25.8
Q ss_pred CeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhh
Q 007723 314 PILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM 358 (591)
Q Consensus 314 ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~ 358 (591)
|+|.|++-+|||++|++|...+ ...++.+.+..+.
T Consensus 4 I~LNG~sSSGKSsia~~Lq~~~----------~~p~~~l~~D~f~ 38 (174)
T PF07931_consen 4 IILNGPSSSGKSSIARALQERL----------PEPWLHLSVDTFV 38 (174)
T ss_dssp EEEEE-TTSSHHHHHHHHHHHS----------SS-EEEEEHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHhC----------cCCeEEEecChHH
Confidence 6899999999999999999977 3455555555444
Done!