Query 007723
Match_columns 591
No_of_seqs 498 out of 3885
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 08:53:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007723.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007723hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pxg_A Negative regulator of g 100.0 4.5E-62 1.5E-66 532.8 31.0 430 80-566 1-432 (468)
2 3pxi_A Negative regulator of g 100.0 8.1E-58 2.8E-62 527.8 30.8 428 80-564 1-430 (758)
3 1qvr_A CLPB protein; coiled co 100.0 3.7E-54 1.3E-58 502.7 34.0 399 80-527 1-402 (854)
4 1r6b_X CLPA protein; AAA+, N-t 100.0 1.4E-52 4.7E-57 484.4 35.2 407 85-519 2-411 (758)
5 3fh2_A Probable ATP-dependent 99.9 1.6E-25 5.6E-30 205.6 17.4 141 80-233 2-144 (146)
6 3fes_A ATP-dependent CLP endop 99.9 1.5E-24 5.2E-29 198.9 12.4 139 80-232 3-143 (145)
7 2y1q_A CLPC N-domain, negative 99.9 6.8E-24 2.3E-28 195.6 14.4 140 80-233 1-142 (150)
8 1khy_A CLPB protein; alpha hel 99.9 1.1E-23 3.9E-28 193.6 15.1 139 80-230 1-141 (148)
9 1jbk_A CLPB protein; beta barr 99.9 8.5E-24 2.9E-28 200.1 12.9 192 270-466 2-194 (195)
10 2p65_A Hypothetical protein PF 99.9 1.8E-23 6.1E-28 197.5 11.1 184 271-458 3-187 (187)
11 3pvs_A Replication-associated 99.9 2.1E-22 7.1E-27 217.7 17.8 248 278-566 14-284 (447)
12 4b4t_J 26S protease regulatory 99.9 5.1E-22 1.7E-26 209.1 19.3 201 285-515 143-367 (405)
13 1k6k_A ATP-dependent CLP prote 99.9 8.7E-22 3E-26 179.9 13.8 135 85-230 2-139 (143)
14 4b4t_I 26S protease regulatory 99.9 1.1E-21 3.7E-26 207.2 15.4 203 285-515 177-401 (437)
15 4b4t_H 26S protease regulatory 99.9 4.3E-21 1.5E-25 204.5 19.6 200 287-516 206-429 (467)
16 3zri_A CLPB protein, CLPV; cha 99.9 4.2E-21 1.4E-25 180.1 15.2 138 78-229 18-160 (171)
17 3d8b_A Fidgetin-like protein 1 99.8 2.7E-20 9.3E-25 195.9 20.9 217 270-514 64-299 (357)
18 4b4t_M 26S protease regulatory 99.8 1.2E-20 4.2E-25 201.4 18.2 201 285-515 176-400 (434)
19 4b4t_K 26S protease regulatory 99.8 3.7E-20 1.3E-24 197.6 21.7 202 286-515 168-392 (428)
20 3eie_A Vacuolar protein sortin 99.8 2.7E-20 9.2E-25 193.1 20.1 208 280-515 8-233 (322)
21 3pxi_A Negative regulator of g 99.8 7.6E-19 2.6E-23 202.5 32.5 179 290-494 491-704 (758)
22 3u61_B DNA polymerase accessor 99.8 2E-20 6.9E-25 193.8 17.0 238 276-563 12-262 (324)
23 3vfd_A Spastin; ATPase, microt 99.8 3.2E-20 1.1E-24 197.6 18.4 211 276-514 101-330 (389)
24 2qp9_X Vacuolar protein sortin 99.8 4.2E-20 1.4E-24 194.3 18.2 214 275-516 36-267 (355)
25 4b4t_L 26S protease subunit RP 99.8 7.8E-20 2.7E-24 195.4 20.1 202 286-515 177-400 (437)
26 2chq_A Replication factor C sm 99.8 1.4E-19 4.8E-24 186.1 19.3 246 278-565 5-255 (319)
27 1xwi_A SKD1 protein; VPS4B, AA 99.8 1.6E-19 5.5E-24 187.3 19.5 205 284-515 6-228 (322)
28 1iqp_A RFCS; clamp loader, ext 99.8 3.4E-19 1.2E-23 183.8 20.6 252 270-563 5-261 (327)
29 3syl_A Protein CBBX; photosynt 99.8 3.3E-19 1.1E-23 183.1 19.0 211 291-517 32-262 (309)
30 3b9p_A CG5977-PA, isoform A; A 99.8 5.8E-19 2E-23 180.5 20.2 211 276-515 7-238 (297)
31 1sxj_D Activator 1 41 kDa subu 99.8 2.1E-19 7.1E-24 187.8 16.6 258 274-567 21-294 (353)
32 3pfi_A Holliday junction ATP-d 99.8 4.4E-19 1.5E-23 184.7 18.3 197 275-519 14-236 (338)
33 3uk6_A RUVB-like 2; hexameric 99.8 1.1E-18 3.9E-23 183.6 20.1 213 277-522 30-315 (368)
34 1sxj_C Activator 1 40 kDa subu 99.8 7.4E-19 2.5E-23 183.5 18.5 248 277-565 12-268 (340)
35 3h4m_A Proteasome-activating n 99.8 1.2E-18 4.1E-23 177.0 19.3 204 286-518 13-239 (285)
36 1jr3_A DNA polymerase III subu 99.8 2E-18 7E-23 181.6 21.7 249 278-566 4-274 (373)
37 2zan_A Vacuolar protein sortin 99.8 6.6E-19 2.3E-23 190.6 17.9 212 277-515 121-350 (444)
38 1r6b_X CLPA protein; AAA+, N-t 99.8 9.2E-18 3.1E-22 193.6 27.2 179 290-493 458-694 (758)
39 1sxj_B Activator 1 37 kDa subu 99.8 3.2E-18 1.1E-22 176.2 20.7 196 278-514 9-213 (323)
40 3cf2_A TER ATPase, transitiona 99.8 2.7E-19 9.1E-24 204.0 13.4 238 286-559 200-458 (806)
41 2chg_A Replication factor C sm 99.8 2.9E-18 9.9E-23 165.8 18.6 197 278-515 5-209 (226)
42 3hu3_A Transitional endoplasmi 99.8 4.6E-18 1.6E-22 185.5 16.8 241 284-559 198-458 (489)
43 3cf2_A TER ATPase, transitiona 99.8 2.1E-19 7E-24 204.9 5.4 202 286-515 473-696 (806)
44 2qz4_A Paraplegin; AAA+, SPG7, 99.8 2.6E-17 8.8E-22 164.6 20.0 204 287-516 3-228 (262)
45 1sxj_E Activator 1 40 kDa subu 99.7 3.1E-18 1E-22 179.3 12.2 204 279-516 3-243 (354)
46 3cf0_A Transitional endoplasmi 99.7 6.1E-18 2.1E-22 173.7 13.7 207 284-517 9-236 (301)
47 1lv7_A FTSH; alpha/beta domain 99.7 2.8E-17 9.6E-22 164.5 17.9 211 280-518 2-233 (257)
48 1njg_A DNA polymerase III subu 99.7 2.3E-17 8E-22 161.3 16.3 202 278-515 11-233 (250)
49 2r44_A Uncharacterized protein 99.7 3.5E-17 1.2E-21 170.0 17.2 217 273-524 10-284 (331)
50 1hqc_A RUVB; extended AAA-ATPa 99.7 1.5E-17 5E-22 171.8 14.2 189 281-518 3-219 (324)
51 2ce7_A Cell division protein F 99.7 7.1E-17 2.4E-21 174.9 18.2 204 287-518 13-237 (476)
52 2c9o_A RUVB-like 1; hexameric 99.7 2.3E-16 7.7E-21 171.3 20.8 115 384-523 297-423 (456)
53 1sxj_A Activator 1 95 kDa subu 99.7 2.3E-17 7.9E-22 181.9 12.6 199 276-514 25-256 (516)
54 1ofh_A ATP-dependent HSL prote 99.7 1.1E-16 3.8E-21 163.8 16.4 215 291-518 16-274 (310)
55 3t15_A Ribulose bisphosphate c 99.7 2.6E-16 9E-21 160.9 16.1 222 311-561 36-292 (293)
56 1in4_A RUVB, holliday junction 99.7 1.3E-15 4.5E-20 158.6 20.8 195 279-521 14-234 (334)
57 3te6_A Regulatory protein SIR3 99.7 2.6E-16 9E-21 161.7 13.5 214 292-520 22-289 (318)
58 3bos_A Putative DNA replicatio 99.7 7.1E-16 2.4E-20 151.4 15.3 202 279-517 16-224 (242)
59 1g8p_A Magnesium-chelatase 38 99.7 1.2E-15 4.2E-20 159.0 17.7 216 285-522 19-307 (350)
60 2r62_A Cell division protease 99.7 9.4E-18 3.2E-22 168.8 1.4 209 282-517 3-233 (268)
61 2bjv_A PSP operon transcriptio 99.7 5.7E-16 2E-20 155.7 13.8 201 288-515 4-238 (265)
62 1l8q_A Chromosomal replication 99.6 2.5E-15 8.4E-20 155.6 16.9 196 288-515 9-213 (324)
63 2v1u_A Cell division control p 99.6 1.5E-15 5E-20 160.0 15.3 214 290-519 19-258 (387)
64 2z4s_A Chromosomal replication 99.6 1.8E-15 6.3E-20 163.3 16.1 208 288-521 103-317 (440)
65 1um8_A ATP-dependent CLP prote 99.6 5.4E-15 1.9E-19 156.3 18.1 211 291-515 22-337 (376)
66 4fcw_A Chaperone protein CLPB; 99.6 4.4E-15 1.5E-19 152.3 16.7 181 291-493 18-257 (311)
67 1ojl_A Transcriptional regulat 99.6 4E-16 1.4E-20 160.4 8.6 200 290-516 2-234 (304)
68 2x8a_A Nuclear valosin-contain 99.6 4.6E-15 1.6E-19 150.2 15.5 233 287-558 7-262 (274)
69 1fnn_A CDC6P, cell division co 99.6 2.6E-14 9E-19 150.7 21.9 214 280-519 10-256 (389)
70 2qby_A CDC6 homolog 1, cell di 99.6 1.7E-14 6E-19 151.5 20.0 209 290-518 20-253 (386)
71 1ixz_A ATP-dependent metallopr 99.6 9.2E-15 3.2E-19 145.9 16.4 205 285-517 11-236 (254)
72 1d2n_A N-ethylmaleimide-sensit 99.6 5.6E-15 1.9E-19 149.0 14.5 196 290-514 33-246 (272)
73 2qby_B CDC6 homolog 3, cell di 99.6 1.8E-14 6E-19 152.0 18.8 217 280-518 13-253 (384)
74 2dhr_A FTSH; AAA+ protein, hex 99.6 2.9E-15 1E-19 163.2 12.7 206 285-518 26-252 (499)
75 3hws_A ATP-dependent CLP prote 99.6 6.7E-15 2.3E-19 154.9 14.5 193 292-495 17-303 (363)
76 1iy2_A ATP-dependent metallopr 99.6 4.7E-14 1.6E-18 142.8 18.5 205 285-517 35-260 (278)
77 3m6a_A ATP-dependent protease 99.6 8.9E-15 3.1E-19 161.9 11.8 179 290-493 81-295 (543)
78 1a5t_A Delta prime, HOLB; zinc 99.5 4.4E-14 1.5E-18 147.0 14.2 171 295-497 7-198 (334)
79 2gno_A DNA polymerase III, gam 99.5 9.6E-14 3.3E-18 142.5 16.1 220 294-565 1-234 (305)
80 1g41_A Heat shock protein HSLU 99.5 1.5E-13 5.1E-18 147.0 16.1 106 382-494 250-382 (444)
81 3k1j_A LON protease, ATP-depen 99.5 3.5E-13 1.2E-17 151.2 19.2 225 281-523 32-361 (604)
82 1ypw_A Transitional endoplasmi 99.5 3E-14 1E-18 164.6 10.5 170 284-472 198-387 (806)
83 1qvr_A CLPB protein; coiled co 99.5 1.7E-13 5.7E-18 159.8 15.3 183 290-494 558-799 (854)
84 3n70_A Transport activator; si 99.5 4.2E-14 1.4E-18 129.0 6.6 136 291-458 2-143 (145)
85 1ypw_A Transitional endoplasmi 99.4 7.8E-15 2.7E-19 169.5 -1.2 170 285-471 472-662 (806)
86 3co5_A Putative two-component 99.4 3.2E-14 1.1E-18 129.5 2.1 131 291-458 5-141 (143)
87 3nbx_X ATPase RAVA; AAA+ ATPas 99.4 6.4E-13 2.2E-17 144.9 10.2 214 291-527 23-276 (500)
88 3f9v_A Minichromosome maintena 99.4 8.9E-15 3.1E-19 163.4 -7.2 248 289-562 294-589 (595)
89 1w5s_A Origin recognition comp 99.3 1.1E-10 3.7E-15 124.0 22.5 216 290-517 22-273 (412)
90 3dzd_A Transcriptional regulat 99.2 2.7E-11 9.3E-16 127.6 9.2 197 291-515 130-359 (368)
91 2qen_A Walker-type ATPase; unk 99.2 5.1E-10 1.7E-14 115.8 16.7 183 290-496 12-238 (350)
92 1ny5_A Transcriptional regulat 99.1 4.6E-11 1.6E-15 126.7 7.5 184 289-493 136-351 (387)
93 1jr3_D DNA polymerase III, del 99.1 1.8E-10 6E-15 120.0 11.5 219 303-564 10-237 (343)
94 3f8t_A Predicted ATPase involv 99.1 3.2E-11 1.1E-15 128.3 4.7 253 288-580 211-504 (506)
95 2fna_A Conserved hypothetical 99.0 1.2E-09 4E-14 113.2 11.7 177 290-495 13-241 (357)
96 2w58_A DNAI, primosome compone 98.9 1.4E-09 4.8E-14 104.1 6.8 102 280-394 15-127 (202)
97 3ec2_A DNA replication protein 98.9 1.8E-09 6.3E-14 101.4 6.3 103 282-394 2-112 (180)
98 4akg_A Glutathione S-transfera 98.8 8.1E-09 2.8E-13 130.7 9.8 140 310-473 1266-1434(2695)
99 3fes_A ATP-dependent CLP endop 98.7 2.1E-08 7.4E-13 91.1 7.8 64 170-233 7-70 (145)
100 3fh2_A Probable ATP-dependent 98.7 3.3E-08 1.1E-12 90.0 8.2 64 170-233 6-69 (146)
101 1khy_A CLPB protein; alpha hel 98.6 5.6E-08 1.9E-12 88.3 8.6 64 170-233 5-68 (148)
102 2qgz_A Helicase loader, putati 98.6 5.7E-08 1.9E-12 99.6 9.1 100 282-394 116-226 (308)
103 3zri_A CLPB protein, CLPV; cha 98.6 6.2E-08 2.1E-12 90.4 7.8 63 170-233 24-86 (171)
104 2y1q_A CLPC N-domain, negative 98.6 7.5E-08 2.6E-12 87.8 7.8 64 170-233 5-68 (150)
105 2kjq_A DNAA-related protein; s 98.5 3.1E-08 1E-12 90.5 3.8 106 310-450 35-140 (149)
106 1k6k_A ATP-dependent CLP prote 98.4 2.6E-07 8.9E-12 83.4 6.9 62 171-234 2-63 (143)
107 1tue_A Replication protein E1; 98.3 3.8E-07 1.3E-11 87.0 5.9 39 297-335 43-82 (212)
108 3vkg_A Dynein heavy chain, cyt 98.3 2.4E-07 8.3E-12 118.1 4.3 157 292-473 1284-1472(3245)
109 3upu_A ATP-dependent DNA helic 98.3 4.5E-06 1.5E-10 90.2 12.7 60 278-338 12-72 (459)
110 4akg_A Glutathione S-transfera 98.1 7.1E-06 2.4E-10 104.3 11.3 124 310-466 644-789 (2695)
111 3pxg_A Negative regulator of g 98.1 3.8E-06 1.3E-10 91.1 7.1 64 170-233 5-68 (468)
112 1u0j_A DNA replication protein 98.0 6.2E-06 2.1E-10 82.0 7.1 38 298-335 89-128 (267)
113 2vhj_A Ntpase P4, P4; non- hyd 98.0 6.1E-06 2.1E-10 84.2 7.0 74 311-396 123-196 (331)
114 1z6t_A APAF-1, apoptotic prote 98.0 3.5E-05 1.2E-09 85.7 12.2 49 286-334 120-170 (591)
115 1ye8_A Protein THEP1, hypothet 97.9 3.9E-05 1.3E-09 71.9 10.0 23 313-335 2-24 (178)
116 2r2a_A Uncharacterized protein 97.9 4.8E-05 1.6E-09 72.6 10.0 132 314-458 8-154 (199)
117 2a5y_B CED-4; apoptosis; HET: 97.8 0.00015 5.1E-09 80.1 13.2 41 293-333 131-174 (549)
118 3vkg_A Dynein heavy chain, cyt 97.7 0.00016 5.5E-09 92.7 13.4 131 301-466 596-749 (3245)
119 2orw_A Thymidine kinase; TMTK, 97.7 5.9E-06 2E-10 78.0 -0.2 24 314-337 6-29 (184)
120 3sfz_A APAF-1, apoptotic pepti 97.7 0.00016 5.4E-09 86.9 12.2 50 285-334 119-170 (1249)
121 2r8r_A Sensor protein; KDPD, P 97.4 0.0003 1E-08 68.1 8.1 30 309-338 4-33 (228)
122 1vt4_I APAF-1 related killer D 97.4 0.0011 3.7E-08 77.2 13.0 43 292-334 130-173 (1221)
123 3cmw_A Protein RECA, recombina 97.3 0.00029 9.9E-09 86.1 7.7 79 312-397 1083-1175(1706)
124 3cmu_A Protein RECA, recombina 97.3 0.00045 1.6E-08 85.4 9.4 81 309-396 1425-1519(2050)
125 2b8t_A Thymidine kinase; deoxy 97.1 0.00021 7E-09 69.4 3.4 26 313-338 14-39 (223)
126 2w0m_A SSO2452; RECA, SSPF, un 97.1 0.00041 1.4E-08 66.6 5.5 27 310-336 22-48 (235)
127 1qhx_A CPT, protein (chloramph 97.1 0.00091 3.1E-08 61.7 7.4 24 312-335 4-27 (178)
128 3e1s_A Exodeoxyribonuclease V, 97.1 0.0014 4.9E-08 72.5 10.2 27 311-337 204-230 (574)
129 2fz4_A DNA repair protein RAD2 97.0 0.0016 5.4E-08 63.6 8.5 24 312-335 109-132 (237)
130 2cvh_A DNA repair and recombin 97.0 0.00048 1.6E-08 65.7 4.4 23 311-333 20-42 (220)
131 3dm5_A SRP54, signal recogniti 96.9 0.014 4.9E-07 62.0 15.4 76 312-394 101-194 (443)
132 3trf_A Shikimate kinase, SK; a 96.8 0.00064 2.2E-08 63.2 3.2 25 311-335 5-29 (185)
133 1n0w_A DNA repair protein RAD5 96.7 0.0035 1.2E-07 60.6 7.8 26 310-335 23-48 (243)
134 2iut_A DNA translocase FTSK; n 96.6 0.0083 2.9E-07 65.7 11.4 169 311-494 214-464 (574)
135 3crm_A TRNA delta(2)-isopenten 96.6 0.0034 1.2E-07 64.2 7.7 23 313-335 7-29 (323)
136 3vaa_A Shikimate kinase, SK; s 96.6 0.0011 3.7E-08 62.7 3.3 26 310-335 24-49 (199)
137 3uie_A Adenylyl-sulfate kinase 96.6 0.0078 2.7E-07 56.7 9.3 28 309-336 23-50 (200)
138 3iij_A Coilin-interacting nucl 96.5 0.0015 5.2E-08 60.4 4.0 25 311-335 11-35 (180)
139 2dr3_A UPF0273 protein PH0284; 96.5 0.0029 9.8E-08 61.3 6.2 28 310-337 22-49 (247)
140 1w36_D RECD, exodeoxyribonucle 96.5 0.0071 2.4E-07 67.4 9.9 27 311-337 164-190 (608)
141 2ze6_A Isopentenyl transferase 96.5 0.0034 1.2E-07 61.9 6.5 23 313-335 3-25 (253)
142 3kb2_A SPBC2 prophage-derived 96.5 0.0016 5.5E-08 59.4 3.8 23 313-335 3-25 (173)
143 1via_A Shikimate kinase; struc 96.5 0.0016 5.5E-08 60.0 3.7 24 312-335 5-28 (175)
144 1g5t_A COB(I)alamin adenosyltr 96.4 0.013 4.4E-07 55.4 9.7 30 310-339 27-56 (196)
145 2vli_A Antibiotic resistance p 96.4 0.0033 1.1E-07 58.0 5.6 24 312-335 6-29 (183)
146 3jvv_A Twitching mobility prot 96.4 0.013 4.4E-07 60.8 10.6 29 309-337 121-149 (356)
147 2ehv_A Hypothetical protein PH 96.4 0.0026 8.9E-08 61.8 5.0 25 310-334 29-53 (251)
148 3a8t_A Adenylate isopentenyltr 96.4 0.0033 1.1E-07 64.5 5.6 24 312-335 41-64 (339)
149 3lda_A DNA repair protein RAD5 96.3 0.0057 2E-07 64.5 7.6 26 310-335 177-202 (400)
150 2iyv_A Shikimate kinase, SK; t 96.3 0.002 6.8E-08 59.8 3.6 24 312-335 3-26 (184)
151 2zr9_A Protein RECA, recombina 96.3 0.0055 1.9E-07 63.4 7.3 78 310-395 60-152 (349)
152 1zuh_A Shikimate kinase; alpha 96.3 0.0017 5.9E-08 59.3 3.1 25 311-335 7-31 (168)
153 2z43_A DNA repair and recombin 96.3 0.0059 2E-07 62.4 7.4 26 310-335 106-131 (324)
154 4a74_A DNA repair and recombin 96.3 0.0053 1.8E-07 58.7 6.6 25 311-335 25-49 (231)
155 1y63_A LMAJ004144AAA protein; 96.3 0.0019 6.6E-08 60.2 3.2 25 310-334 9-33 (184)
156 3exa_A TRNA delta(2)-isopenten 96.2 0.0074 2.5E-07 61.2 7.4 23 313-335 5-27 (322)
157 1kag_A SKI, shikimate kinase I 96.2 0.0025 8.5E-08 58.3 3.6 24 312-335 5-28 (173)
158 3foz_A TRNA delta(2)-isopenten 96.2 0.0075 2.6E-07 61.1 7.4 23 313-335 12-34 (316)
159 3hr8_A Protein RECA; alpha and 96.2 0.0078 2.7E-07 62.4 7.3 79 311-396 61-153 (356)
160 2p5t_B PEZT; postsegregational 96.1 0.012 4E-07 57.8 8.2 23 313-335 34-56 (253)
161 1xp8_A RECA protein, recombina 96.1 0.0078 2.7E-07 62.7 7.1 79 310-396 73-166 (366)
162 2rhm_A Putative kinase; P-loop 96.1 0.0022 7.5E-08 59.7 2.7 24 312-335 6-29 (193)
163 1xx6_A Thymidine kinase; NESG, 96.1 0.0016 5.6E-08 61.5 1.7 25 314-338 11-35 (191)
164 1u94_A RECA protein, recombina 96.1 0.011 3.9E-07 61.2 8.2 79 310-396 62-155 (356)
165 1e6c_A Shikimate kinase; phosp 96.1 0.0033 1.1E-07 57.5 3.7 24 312-335 3-26 (173)
166 3a4m_A L-seryl-tRNA(SEC) kinas 96.1 0.0089 3E-07 59.0 7.1 26 312-337 5-30 (260)
167 1sky_E F1-ATPase, F1-ATP synth 96.1 0.0096 3.3E-07 63.7 7.8 28 310-337 150-177 (473)
168 3lxw_A GTPase IMAP family memb 96.0 0.0066 2.3E-07 59.5 5.8 22 312-333 22-43 (247)
169 3lxx_A GTPase IMAP family memb 96.0 0.01 3.6E-07 57.5 7.2 24 311-334 29-52 (239)
170 3lw7_A Adenylate kinase relate 96.0 0.003 1E-07 57.4 3.0 22 313-335 3-24 (179)
171 3kl4_A SRP54, signal recogniti 96.0 0.011 3.7E-07 62.9 7.7 26 313-338 99-124 (433)
172 2ga8_A Hypothetical 39.9 kDa p 96.0 0.0049 1.7E-07 63.6 4.9 44 293-336 2-49 (359)
173 2c95_A Adenylate kinase 1; tra 96.0 0.0034 1.2E-07 58.5 3.3 25 311-335 9-33 (196)
174 1aky_A Adenylate kinase; ATP:A 96.0 0.0036 1.2E-07 59.9 3.6 25 311-335 4-28 (220)
175 3t61_A Gluconokinase; PSI-biol 96.0 0.0037 1.3E-07 59.0 3.5 24 312-335 19-42 (202)
176 1v5w_A DMC1, meiotic recombina 95.9 0.015 5.3E-07 59.9 8.4 25 311-335 122-146 (343)
177 2cdn_A Adenylate kinase; phosp 95.9 0.0039 1.3E-07 58.8 3.4 24 312-335 21-44 (201)
178 1gvn_B Zeta; postsegregational 95.9 0.0077 2.6E-07 60.5 5.8 23 313-335 35-57 (287)
179 1m7g_A Adenylylsulfate kinase; 95.9 0.014 4.8E-07 55.4 7.2 30 307-336 21-50 (211)
180 3cm0_A Adenylate kinase; ATP-b 95.8 0.0039 1.3E-07 57.7 3.0 23 313-335 6-28 (186)
181 1tev_A UMP-CMP kinase; ploop, 95.8 0.0045 1.5E-07 57.5 3.4 23 313-335 5-27 (196)
182 1nks_A Adenylate kinase; therm 95.8 0.0037 1.3E-07 58.0 2.8 24 313-336 3-26 (194)
183 2r6a_A DNAB helicase, replicat 95.8 0.0074 2.5E-07 64.8 5.5 27 311-337 203-229 (454)
184 1kht_A Adenylate kinase; phosp 95.8 0.0041 1.4E-07 57.6 3.0 25 312-336 4-28 (192)
185 2pt5_A Shikimate kinase, SK; a 95.8 0.0046 1.6E-07 56.2 3.2 23 313-335 2-24 (168)
186 1ly1_A Polynucleotide kinase; 95.8 0.004 1.4E-07 57.1 2.7 21 313-333 4-24 (181)
187 3be4_A Adenylate kinase; malar 95.8 0.005 1.7E-07 59.0 3.5 25 311-335 5-29 (217)
188 3dl0_A Adenylate kinase; phosp 95.8 0.0038 1.3E-07 59.5 2.6 23 313-335 2-24 (216)
189 2bwj_A Adenylate kinase 5; pho 95.8 0.0047 1.6E-07 57.7 3.2 25 311-335 12-36 (199)
190 1ak2_A Adenylate kinase isoenz 95.8 0.0053 1.8E-07 59.5 3.6 25 311-335 16-40 (233)
191 2ius_A DNA translocase FTSK; n 95.7 0.034 1.2E-06 60.3 10.3 72 384-467 299-374 (512)
192 3sr0_A Adenylate kinase; phosp 95.7 0.006 2.1E-07 58.2 3.9 22 314-335 3-24 (206)
193 3fb4_A Adenylate kinase; psych 95.7 0.0049 1.7E-07 58.7 3.2 23 313-335 2-24 (216)
194 4eun_A Thermoresistant glucoki 95.7 0.005 1.7E-07 58.1 3.2 27 309-335 27-53 (200)
195 3b6e_A Interferon-induced heli 95.7 0.01 3.5E-07 56.0 5.4 25 311-335 48-72 (216)
196 2zts_A Putative uncharacterize 95.7 0.013 4.6E-07 56.6 6.3 25 310-334 29-53 (251)
197 3tlx_A Adenylate kinase 2; str 95.7 0.012 4.1E-07 57.5 5.9 25 311-335 29-53 (243)
198 1zd8_A GTP:AMP phosphotransfer 95.7 0.0047 1.6E-07 59.5 2.9 25 311-335 7-31 (227)
199 1knq_A Gluconate kinase; ALFA/ 95.7 0.0066 2.3E-07 55.7 3.8 24 312-335 9-32 (175)
200 1qf9_A UMP/CMP kinase, protein 95.7 0.0054 1.8E-07 56.8 3.2 23 313-335 8-30 (194)
201 2gxq_A Heat resistant RNA depe 95.6 0.083 2.8E-06 49.3 11.5 25 311-335 38-63 (207)
202 3eph_A TRNA isopentenyltransfe 95.6 0.018 6.2E-07 60.4 7.3 23 313-335 4-26 (409)
203 2qor_A Guanylate kinase; phosp 95.6 0.0057 1.9E-07 57.9 3.2 25 311-335 12-36 (204)
204 3p32_A Probable GTPase RV1496/ 95.6 0.033 1.1E-06 57.6 9.2 26 312-337 80-105 (355)
205 1pzn_A RAD51, DNA repair and r 95.6 0.013 4.3E-07 60.7 6.0 26 310-335 130-155 (349)
206 2q6t_A DNAB replication FORK h 95.6 0.012 4E-07 63.0 5.9 26 312-337 201-226 (444)
207 1zak_A Adenylate kinase; ATP:A 95.6 0.0062 2.1E-07 58.3 3.4 25 311-335 5-29 (222)
208 1ex7_A Guanylate kinase; subst 95.6 0.0062 2.1E-07 57.2 3.2 24 312-335 2-25 (186)
209 1w4r_A Thymidine kinase; type 95.5 0.0091 3.1E-07 56.3 4.3 24 314-337 23-47 (195)
210 2yvu_A Probable adenylyl-sulfa 95.5 0.0057 2E-07 56.8 2.8 26 312-337 14-39 (186)
211 1rif_A DAR protein, DNA helica 95.5 0.12 4.1E-06 51.2 12.6 39 295-336 115-153 (282)
212 3ly5_A ATP-dependent RNA helic 95.5 0.21 7.2E-06 49.0 14.3 19 312-330 92-110 (262)
213 2eyu_A Twitching motility prot 95.4 0.0093 3.2E-07 59.1 4.2 28 309-336 23-50 (261)
214 1ukz_A Uridylate kinase; trans 95.4 0.0069 2.4E-07 57.0 3.1 24 312-335 16-39 (203)
215 3umf_A Adenylate kinase; rossm 95.4 0.0085 2.9E-07 57.7 3.7 23 313-335 31-53 (217)
216 1zp6_A Hypothetical protein AT 95.4 0.0049 1.7E-07 57.3 2.0 24 311-334 9-32 (191)
217 3fe2_A Probable ATP-dependent 95.4 0.28 9.6E-06 47.2 14.7 20 311-330 66-85 (242)
218 1e4v_A Adenylate kinase; trans 95.4 0.0064 2.2E-07 58.0 2.7 23 313-335 2-24 (214)
219 2plr_A DTMP kinase, probable t 95.4 0.0072 2.5E-07 56.9 3.0 24 313-336 6-29 (213)
220 2j9r_A Thymidine kinase; TK1, 95.4 0.0033 1.1E-07 60.3 0.5 24 315-338 32-55 (214)
221 3d3q_A TRNA delta(2)-isopenten 95.4 0.03 1E-06 57.5 7.8 23 313-335 9-31 (340)
222 2jaq_A Deoxyguanosine kinase; 95.3 0.0077 2.6E-07 56.4 3.0 23 313-335 2-24 (205)
223 3nwj_A ATSK2; P loop, shikimat 95.3 0.01 3.5E-07 58.4 4.0 25 311-335 48-72 (250)
224 1vma_A Cell division protein F 95.3 0.034 1.2E-06 56.3 7.8 25 313-337 106-130 (306)
225 1kgd_A CASK, peripheral plasma 95.3 0.0085 2.9E-07 55.5 3.1 24 312-335 6-29 (180)
226 2px0_A Flagellar biosynthesis 95.2 0.036 1.2E-06 55.9 7.8 27 311-337 105-131 (296)
227 3cr8_A Sulfate adenylyltranfer 95.2 0.031 1.1E-06 61.3 7.9 58 279-336 334-394 (552)
228 2z0h_A DTMP kinase, thymidylat 95.2 0.011 3.7E-07 55.1 3.6 25 314-338 3-27 (197)
229 2pbr_A DTMP kinase, thymidylat 95.2 0.012 4E-07 54.7 3.8 24 314-337 3-26 (195)
230 2xb4_A Adenylate kinase; ATP-b 95.2 0.01 3.5E-07 57.1 3.4 23 313-335 2-24 (223)
231 2ewv_A Twitching motility prot 95.2 0.0094 3.2E-07 62.3 3.4 29 309-337 134-162 (372)
232 2wwf_A Thymidilate kinase, put 95.1 0.0097 3.3E-07 56.2 3.1 26 312-337 11-36 (212)
233 3cmu_A Protein RECA, recombina 95.1 0.019 6.4E-07 71.4 6.1 80 309-395 1079-1172(2050)
234 1nn5_A Similar to deoxythymidy 95.1 0.013 4.3E-07 55.5 3.7 27 311-337 9-35 (215)
235 1lvg_A Guanylate kinase, GMP k 95.1 0.012 3.9E-07 55.6 3.3 25 311-335 4-28 (198)
236 2axn_A 6-phosphofructo-2-kinas 95.1 0.069 2.4E-06 58.2 10.0 25 312-336 36-60 (520)
237 2bbw_A Adenylate kinase 4, AK4 95.1 0.011 3.7E-07 57.7 3.2 25 311-335 27-51 (246)
238 3tau_A Guanylate kinase, GMP k 95.0 0.01 3.6E-07 56.4 2.9 25 311-335 8-32 (208)
239 2i1q_A DNA repair and recombin 95.0 0.021 7E-07 58.2 5.4 26 310-335 97-122 (322)
240 3c8u_A Fructokinase; YP_612366 95.0 0.011 3.6E-07 56.2 2.9 25 312-336 23-47 (208)
241 2if2_A Dephospho-COA kinase; a 95.0 0.011 3.6E-07 55.7 2.8 22 313-335 3-24 (204)
242 2bdt_A BH3686; alpha-beta prot 95.0 0.011 3.7E-07 55.0 2.8 21 314-334 5-25 (189)
243 1rz3_A Hypothetical protein rb 94.9 0.02 6.7E-07 54.1 4.6 43 295-337 3-48 (201)
244 2wsm_A Hydrogenase expression/ 94.9 0.015 5.1E-07 55.3 3.6 42 294-335 13-54 (221)
245 2v54_A DTMP kinase, thymidylat 94.9 0.01 3.4E-07 55.7 2.4 24 312-335 5-28 (204)
246 1cke_A CK, MSSA, protein (cyti 94.9 0.012 4.2E-07 56.2 3.0 24 312-335 6-29 (227)
247 2j37_W Signal recognition part 94.8 0.066 2.2E-06 58.0 8.9 25 313-337 103-127 (504)
248 3tr0_A Guanylate kinase, GMP k 94.8 0.013 4.3E-07 55.1 2.9 24 312-335 8-31 (205)
249 2pt7_A CAG-ALFA; ATPase, prote 94.8 0.013 4.4E-07 60.2 3.0 26 310-335 170-195 (330)
250 2j41_A Guanylate kinase; GMP, 94.7 0.014 4.8E-07 54.8 3.0 25 311-335 6-30 (207)
251 3a00_A Guanylate kinase, GMP k 94.7 0.015 5E-07 54.2 3.0 24 313-336 3-26 (186)
252 3ney_A 55 kDa erythrocyte memb 94.7 0.015 5.1E-07 55.1 3.0 26 310-335 18-43 (197)
253 2pez_A Bifunctional 3'-phospho 94.7 0.017 5.9E-07 53.1 3.4 27 311-337 5-31 (179)
254 1qde_A EIF4A, translation init 94.6 0.3 1E-05 46.2 12.2 18 311-328 51-68 (224)
255 2hf9_A Probable hydrogenase ni 94.6 0.025 8.6E-07 53.9 4.5 38 298-335 25-62 (226)
256 3ice_A Transcription terminati 94.6 0.083 2.9E-06 55.0 8.5 36 302-337 164-200 (422)
257 3zvl_A Bifunctional polynucleo 94.5 0.026 9E-07 59.7 4.8 25 311-335 258-282 (416)
258 1svi_A GTP-binding protein YSX 94.5 0.018 6.2E-07 53.2 3.2 25 310-334 22-46 (195)
259 3cmw_A Protein RECA, recombina 94.5 0.067 2.3E-06 65.7 8.8 76 312-395 733-823 (1706)
260 2pl3_A Probable ATP-dependent 94.5 0.29 1E-05 46.7 11.9 20 311-330 62-81 (236)
261 2grj_A Dephospho-COA kinase; T 94.5 0.021 7.2E-07 53.8 3.5 22 314-335 15-36 (192)
262 3ake_A Cytidylate kinase; CMP 94.5 0.019 6.6E-07 53.8 3.2 23 313-335 4-26 (208)
263 3pqc_A Probable GTP-binding pr 94.4 0.022 7.6E-07 52.4 3.4 24 311-334 23-46 (195)
264 3pey_A ATP-dependent RNA helic 94.3 0.3 1E-05 50.1 12.3 24 309-332 42-65 (395)
265 2xxa_A Signal recognition part 94.3 0.062 2.1E-06 57.1 7.0 27 312-338 101-127 (433)
266 3r20_A Cytidylate kinase; stru 94.3 0.024 8.3E-07 55.1 3.5 24 312-335 10-33 (233)
267 1z6g_A Guanylate kinase; struc 94.2 0.023 7.8E-07 54.5 3.2 26 310-335 22-47 (218)
268 1uj2_A Uridine-cytidine kinase 94.2 0.036 1.2E-06 54.2 4.7 44 313-358 24-67 (252)
269 3iuy_A Probable ATP-dependent 94.2 0.35 1.2E-05 45.9 11.7 20 311-330 57-76 (228)
270 2oca_A DAR protein, ATP-depend 94.2 0.41 1.4E-05 51.5 13.5 25 312-336 129-153 (510)
271 2oxc_A Probable ATP-dependent 94.2 0.3 1E-05 46.6 11.2 18 311-328 61-78 (230)
272 1gm5_A RECG; helicase, replica 94.2 0.17 5.8E-06 57.8 10.8 42 293-334 371-412 (780)
273 1gtv_A TMK, thymidylate kinase 94.2 0.012 4.1E-07 55.7 1.0 23 314-336 3-25 (214)
274 2v3c_C SRP54, signal recogniti 94.1 0.021 7.1E-07 60.8 2.9 26 312-337 100-125 (432)
275 1j8m_F SRP54, signal recogniti 94.0 0.075 2.6E-06 53.6 6.7 26 312-337 99-124 (297)
276 1znw_A Guanylate kinase, GMP k 94.0 0.024 8.2E-07 53.7 2.8 25 311-335 20-44 (207)
277 3vkw_A Replicase large subunit 94.0 0.041 1.4E-06 58.5 4.8 19 315-333 165-183 (446)
278 1s96_A Guanylate kinase, GMP k 94.0 0.024 8.3E-07 54.5 2.8 26 311-336 16-41 (219)
279 1svm_A Large T antigen; AAA+ f 94.0 0.05 1.7E-06 56.8 5.4 27 309-335 167-193 (377)
280 2eyq_A TRCF, transcription-rep 93.9 0.097 3.3E-06 62.6 8.5 40 296-335 609-648 (1151)
281 1jjv_A Dephospho-COA kinase; P 93.9 0.023 8E-07 53.5 2.6 21 313-333 4-24 (206)
282 4gp7_A Metallophosphoesterase; 93.9 0.022 7.7E-07 52.2 2.4 19 313-331 11-29 (171)
283 3e70_C DPA, signal recognition 93.9 0.1 3.4E-06 53.4 7.5 27 311-337 129-155 (328)
284 4e22_A Cytidylate kinase; P-lo 93.9 0.026 8.9E-07 55.4 3.0 25 311-335 27-51 (252)
285 1htw_A HI0065; nucleotide-bind 93.9 0.027 9.3E-07 51.3 2.8 26 310-335 32-57 (158)
286 4b3f_X DNA-binding protein smu 93.9 0.11 3.9E-06 58.1 8.5 40 296-337 192-231 (646)
287 3asz_A Uridine kinase; cytidin 93.9 0.026 9E-07 53.2 2.8 24 313-336 8-31 (211)
288 3dkp_A Probable ATP-dependent 93.9 0.33 1.1E-05 46.6 10.9 19 311-329 66-84 (245)
289 1zu4_A FTSY; GTPase, signal re 93.9 0.081 2.8E-06 53.9 6.6 24 314-337 108-131 (320)
290 2qm8_A GTPase/ATPase; G protei 93.9 0.19 6.5E-06 51.5 9.5 26 311-336 55-80 (337)
291 1g8f_A Sulfate adenylyltransfe 93.8 0.035 1.2E-06 60.2 4.0 46 291-336 373-420 (511)
292 3bh0_A DNAB-like replicative h 93.8 0.15 5.1E-06 51.7 8.5 27 311-337 68-94 (315)
293 3fht_A ATP-dependent RNA helic 93.8 0.45 1.6E-05 49.1 12.5 21 309-329 62-82 (412)
294 2z0m_A 337AA long hypothetical 93.8 0.39 1.3E-05 48.0 11.7 23 311-333 31-53 (337)
295 2h92_A Cytidylate kinase; ross 93.8 0.037 1.2E-06 52.6 3.6 24 312-335 4-27 (219)
296 1vht_A Dephospho-COA kinase; s 93.8 0.03 1E-06 53.2 3.0 21 313-333 6-26 (218)
297 3io5_A Recombination and repai 93.7 0.072 2.5E-06 54.1 5.8 79 313-396 30-125 (333)
298 3bor_A Human initiation factor 93.7 0.37 1.3E-05 46.2 10.9 20 311-330 67-86 (237)
299 2qmh_A HPR kinase/phosphorylas 93.7 0.024 8.2E-07 53.6 2.1 24 312-335 35-58 (205)
300 1r8s_A ADP-ribosylation factor 93.6 0.044 1.5E-06 48.8 3.8 23 313-335 2-24 (164)
301 2i3b_A HCR-ntpase, human cance 93.6 0.039 1.3E-06 51.7 3.5 24 313-336 3-26 (189)
302 1ltq_A Polynucleotide kinase; 93.6 0.03 1E-06 56.1 2.7 22 313-334 4-25 (301)
303 1q3t_A Cytidylate kinase; nucl 93.5 0.042 1.4E-06 53.1 3.7 25 311-335 16-40 (236)
304 2gks_A Bifunctional SAT/APS ki 93.5 0.16 5.6E-06 55.6 8.8 46 292-337 351-398 (546)
305 1zj6_A ADP-ribosylation factor 93.5 0.046 1.6E-06 50.2 3.8 34 299-333 5-38 (187)
306 1bif_A 6-phosphofructo-2-kinas 93.5 0.11 3.7E-06 55.8 7.3 27 311-337 39-65 (469)
307 1uf9_A TT1252 protein; P-loop, 93.5 0.027 9.3E-07 52.6 2.2 23 312-334 9-31 (203)
308 4eaq_A DTMP kinase, thymidylat 93.5 0.035 1.2E-06 53.7 3.0 25 312-336 27-51 (229)
309 3fmo_B ATP-dependent RNA helic 93.5 0.24 8.4E-06 49.7 9.4 20 309-328 129-148 (300)
310 2yhs_A FTSY, cell division pro 93.5 0.068 2.3E-06 57.5 5.4 25 313-337 295-319 (503)
311 1hv8_A Putative ATP-dependent 93.4 0.61 2.1E-05 47.1 12.5 25 311-335 44-68 (367)
312 2v9p_A Replication protein E1; 93.4 0.038 1.3E-06 56.0 3.1 30 309-339 124-153 (305)
313 1vec_A ATP-dependent RNA helic 93.3 0.28 9.5E-06 45.7 9.0 19 311-329 40-58 (206)
314 1zd9_A ADP-ribosylation factor 93.3 0.052 1.8E-06 50.0 3.8 23 312-334 23-45 (188)
315 1t6n_A Probable ATP-dependent 93.3 0.4 1.4E-05 45.1 10.2 25 311-335 51-75 (220)
316 1odf_A YGR205W, hypothetical 3 93.3 0.07 2.4E-06 53.6 4.9 24 314-337 34-57 (290)
317 3b85_A Phosphate starvation-in 93.2 0.028 9.7E-07 53.6 1.8 24 311-334 22-45 (208)
318 2orv_A Thymidine kinase; TP4A 93.2 0.11 3.6E-06 50.3 5.8 23 315-337 23-45 (234)
319 2f6r_A COA synthase, bifunctio 93.2 0.041 1.4E-06 54.9 3.0 21 313-333 77-97 (281)
320 2qt1_A Nicotinamide riboside k 93.2 0.031 1.1E-06 52.7 2.0 23 313-335 23-45 (207)
321 1p9r_A General secretion pathw 93.2 0.074 2.5E-06 56.3 5.1 38 298-336 155-192 (418)
322 1ls1_A Signal recognition part 93.1 0.11 3.8E-06 52.2 6.2 26 312-337 99-124 (295)
323 3e2i_A Thymidine kinase; Zn-bi 93.1 0.017 5.9E-07 55.3 0.2 24 314-337 31-54 (219)
324 1xjc_A MOBB protein homolog; s 93.1 0.06 2.1E-06 49.5 3.7 26 312-337 5-30 (169)
325 4dhe_A Probable GTP-binding pr 93.1 0.049 1.7E-06 51.6 3.2 24 311-334 29-52 (223)
326 1nrj_B SR-beta, signal recogni 93.0 0.045 1.6E-06 51.6 3.0 26 310-335 11-36 (218)
327 3tqc_A Pantothenate kinase; bi 93.0 0.07 2.4E-06 54.4 4.5 23 314-336 95-117 (321)
328 3lnc_A Guanylate kinase, GMP k 93.0 0.029 1E-06 54.0 1.6 24 312-335 28-52 (231)
329 1cr0_A DNA primase/helicase; R 93.0 0.076 2.6E-06 53.1 4.7 27 311-337 35-61 (296)
330 1m8p_A Sulfate adenylyltransfe 93.0 0.096 3.3E-06 57.8 5.8 39 313-357 398-436 (573)
331 2f9l_A RAB11B, member RAS onco 92.8 0.048 1.6E-06 50.8 2.8 22 313-334 7-28 (199)
332 3ber_A Probable ATP-dependent 92.8 1 3.4E-05 43.6 12.5 19 311-329 80-98 (249)
333 2fh5_B SR-beta, signal recogni 92.8 0.061 2.1E-06 50.6 3.5 26 310-335 6-31 (214)
334 1oix_A RAS-related protein RAB 92.8 0.045 1.6E-06 50.8 2.5 23 313-335 31-53 (191)
335 1np6_A Molybdopterin-guanine d 92.8 0.056 1.9E-06 50.0 3.0 26 312-337 7-32 (174)
336 1rj9_A FTSY, signal recognitio 92.7 0.055 1.9E-06 54.8 3.2 27 311-337 102-128 (304)
337 2dyk_A GTP-binding protein; GT 92.7 0.049 1.7E-06 48.3 2.5 22 313-334 3-24 (161)
338 3h1t_A Type I site-specific re 92.7 0.11 3.7E-06 57.4 5.7 42 295-337 183-224 (590)
339 2wji_A Ferrous iron transport 92.6 0.051 1.7E-06 49.0 2.6 21 313-333 5-25 (165)
340 1nlf_A Regulatory protein REPA 92.6 0.058 2E-06 53.5 3.2 29 310-338 29-57 (279)
341 1moz_A ARL1, ADP-ribosylation 92.6 0.034 1.2E-06 50.7 1.3 24 309-332 16-39 (183)
342 2zej_A Dardarin, leucine-rich 92.6 0.043 1.5E-06 50.4 2.0 21 313-333 4-24 (184)
343 1z2a_A RAS-related protein RAB 92.6 0.052 1.8E-06 48.4 2.5 23 312-334 6-28 (168)
344 2jeo_A Uridine-cytidine kinase 92.5 0.059 2E-06 52.4 3.1 23 313-335 27-49 (245)
345 3bgw_A DNAB-like replicative h 92.5 0.19 6.5E-06 53.6 7.2 26 312-337 198-223 (444)
346 1kao_A RAP2A; GTP-binding prot 92.5 0.053 1.8E-06 48.2 2.5 22 313-334 5-26 (167)
347 3eiq_A Eukaryotic initiation f 92.5 0.36 1.2E-05 50.0 9.3 22 311-332 77-98 (414)
348 3iby_A Ferrous iron transport 92.5 0.095 3.2E-06 51.5 4.5 23 312-334 2-24 (256)
349 2ged_A SR-beta, signal recogni 92.4 0.062 2.1E-06 49.5 2.9 25 310-334 47-71 (193)
350 3sop_A Neuronal-specific septi 92.4 0.052 1.8E-06 53.9 2.5 23 313-335 4-26 (270)
351 3kta_A Chromosome segregation 92.4 0.059 2E-06 49.4 2.8 24 313-336 28-51 (182)
352 4edh_A DTMP kinase, thymidylat 92.4 0.081 2.8E-06 50.5 3.8 26 313-338 8-33 (213)
353 2nzj_A GTP-binding protein REM 92.4 0.052 1.8E-06 48.8 2.3 22 312-333 5-26 (175)
354 1x6v_B Bifunctional 3'-phospho 92.4 0.18 6E-06 56.0 6.9 26 312-337 53-78 (630)
355 3aez_A Pantothenate kinase; tr 92.4 0.062 2.1E-06 54.6 3.0 25 313-337 92-116 (312)
356 2ce2_X GTPase HRAS; signaling 92.4 0.053 1.8E-06 48.0 2.3 22 313-334 5-26 (166)
357 2xtp_A GTPase IMAP family memb 92.3 0.19 6.4E-06 49.0 6.4 23 311-333 22-44 (260)
358 1u8z_A RAS-related protein RAL 92.3 0.059 2E-06 47.9 2.5 23 312-334 5-27 (168)
359 3fmp_B ATP-dependent RNA helic 92.3 0.56 1.9E-05 50.0 10.7 20 309-328 129-148 (479)
360 1ek0_A Protein (GTP-binding pr 92.3 0.059 2E-06 48.1 2.5 22 313-334 5-26 (170)
361 1q0u_A Bstdead; DEAD protein, 92.3 0.56 1.9E-05 44.2 9.5 20 311-330 41-60 (219)
362 2j0s_A ATP-dependent RNA helic 92.2 0.95 3.2E-05 46.8 12.2 23 311-333 74-96 (410)
363 3b9q_A Chloroplast SRP recepto 92.2 0.068 2.3E-06 54.0 3.0 25 313-337 102-126 (302)
364 2lkc_A Translation initiation 92.2 0.068 2.3E-06 48.3 2.8 24 310-333 7-30 (178)
365 1fuu_A Yeast initiation factor 92.1 0.64 2.2E-05 47.6 10.6 20 311-330 58-77 (394)
366 2f1r_A Molybdopterin-guanine d 92.1 0.043 1.5E-06 50.6 1.4 25 313-337 4-28 (171)
367 4gzl_A RAS-related C3 botulinu 92.1 0.053 1.8E-06 50.8 2.1 28 307-334 26-53 (204)
368 1z0j_A RAB-22, RAS-related pro 92.1 0.063 2.2E-06 47.9 2.5 23 312-334 7-29 (170)
369 3dmq_A RNA polymerase-associat 92.1 0.41 1.4E-05 56.1 10.0 42 295-337 155-196 (968)
370 1wms_A RAB-9, RAB9, RAS-relate 92.1 0.064 2.2E-06 48.4 2.5 23 312-334 8-30 (177)
371 3tif_A Uncharacterized ABC tra 92.0 0.057 2E-06 52.4 2.2 25 311-335 31-55 (235)
372 2fwr_A DNA repair protein RAD2 91.9 0.35 1.2E-05 51.5 8.5 24 312-335 109-132 (472)
373 1z08_A RAS-related protein RAB 91.9 0.068 2.3E-06 47.8 2.5 23 312-334 7-29 (170)
374 1g16_A RAS-related protein SEC 91.9 0.064 2.2E-06 47.9 2.3 21 313-333 5-25 (170)
375 1c1y_A RAS-related protein RAP 91.9 0.069 2.4E-06 47.5 2.5 22 313-334 5-26 (167)
376 2p67_A LAO/AO transport system 91.9 0.29 1E-05 50.1 7.5 27 311-337 56-82 (341)
377 2wjg_A FEOB, ferrous iron tran 91.8 0.072 2.4E-06 48.7 2.6 21 313-333 9-29 (188)
378 2onk_A Molybdate/tungstate ABC 91.8 0.069 2.4E-06 52.1 2.6 24 312-335 25-48 (240)
379 2pcj_A ABC transporter, lipopr 91.8 0.057 2E-06 52.0 1.9 25 311-335 30-54 (224)
380 2ffh_A Protein (FFH); SRP54, s 91.8 0.2 7E-06 52.9 6.3 26 312-337 99-124 (425)
381 3q72_A GTP-binding protein RAD 91.8 0.065 2.2E-06 47.8 2.2 20 313-332 4-23 (166)
382 2erx_A GTP-binding protein DI- 91.8 0.068 2.3E-06 47.7 2.3 21 313-333 5-25 (172)
383 1r2q_A RAS-related protein RAB 91.8 0.073 2.5E-06 47.4 2.5 23 312-334 7-29 (170)
384 3q85_A GTP-binding protein REM 91.8 0.075 2.6E-06 47.5 2.6 20 313-332 4-23 (169)
385 1ky3_A GTP-binding protein YPT 91.8 0.072 2.5E-06 48.2 2.5 24 311-334 8-31 (182)
386 3bc1_A RAS-related protein RAB 91.8 0.072 2.5E-06 48.7 2.5 23 312-334 12-34 (195)
387 1wrb_A DJVLGB; RNA helicase, D 91.7 2.1 7.1E-05 41.2 13.2 20 311-330 60-79 (253)
388 1wb9_A DNA mismatch repair pro 91.6 0.23 7.9E-06 56.8 7.0 23 313-335 609-631 (800)
389 2cbz_A Multidrug resistance-as 91.6 0.069 2.4E-06 51.9 2.2 25 311-335 31-55 (237)
390 3fho_A ATP-dependent RNA helic 91.6 0.86 2.9E-05 49.2 11.2 26 310-335 157-183 (508)
391 1upt_A ARL1, ADP-ribosylation 91.5 0.079 2.7E-06 47.4 2.5 23 311-333 7-29 (171)
392 2gk6_A Regulator of nonsense t 91.5 0.15 5E-06 57.0 5.1 39 296-337 183-221 (624)
393 1sgw_A Putative ABC transporte 91.5 0.079 2.7E-06 50.7 2.5 25 311-335 35-59 (214)
394 2qtf_A Protein HFLX, GTP-bindi 91.5 0.098 3.4E-06 54.3 3.4 32 169-206 64-96 (364)
395 3i5x_A ATP-dependent RNA helic 91.5 0.92 3.2E-05 49.3 11.5 21 310-330 110-130 (563)
396 2xau_A PRE-mRNA-splicing facto 91.5 0.44 1.5E-05 54.5 9.1 23 311-333 109-131 (773)
397 3lv8_A DTMP kinase, thymidylat 91.5 0.11 3.8E-06 50.5 3.5 28 312-339 28-55 (236)
398 3con_A GTPase NRAS; structural 91.5 0.081 2.8E-06 48.5 2.5 23 312-334 22-44 (190)
399 2fn4_A P23, RAS-related protei 91.4 0.076 2.6E-06 48.0 2.2 23 312-334 10-32 (181)
400 3fdi_A Uncharacterized protein 91.4 0.1 3.5E-06 49.2 3.2 23 313-335 8-30 (201)
401 3tw8_B RAS-related protein RAB 91.4 0.074 2.5E-06 48.0 2.1 22 312-333 10-31 (181)
402 4dsu_A GTPase KRAS, isoform 2B 91.4 0.082 2.8E-06 48.2 2.5 23 312-334 5-27 (189)
403 2gj8_A MNME, tRNA modification 91.4 0.08 2.7E-06 48.2 2.4 23 312-334 5-27 (172)
404 4f4c_A Multidrug resistance pr 91.4 0.085 2.9E-06 64.0 3.3 27 309-335 442-468 (1321)
405 1z0f_A RAB14, member RAS oncog 91.4 0.084 2.9E-06 47.5 2.5 23 312-334 16-38 (179)
406 2gza_A Type IV secretion syste 91.4 0.069 2.4E-06 55.3 2.1 27 309-335 173-199 (361)
407 2oil_A CATX-8, RAS-related pro 91.4 0.084 2.9E-06 48.6 2.5 23 312-334 26-48 (193)
408 2y8e_A RAB-protein 6, GH09086P 91.3 0.08 2.7E-06 47.7 2.3 22 312-333 15-36 (179)
409 2hxs_A RAB-26, RAS-related pro 91.3 0.081 2.8E-06 47.8 2.3 23 312-334 7-29 (178)
410 1wp9_A ATP-dependent RNA helic 91.3 0.74 2.5E-05 48.2 10.2 24 313-336 25-48 (494)
411 1b0u_A Histidine permease; ABC 91.3 0.076 2.6E-06 52.5 2.2 25 311-335 32-56 (262)
412 1m7b_A RND3/RHOE small GTP-bin 91.3 0.088 3E-06 48.2 2.5 23 312-334 8-30 (184)
413 2a9k_A RAS-related protein RAL 91.3 0.088 3E-06 47.8 2.5 23 312-334 19-41 (187)
414 3fvq_A Fe(3+) IONS import ATP- 91.2 0.078 2.7E-06 54.8 2.4 25 311-335 30-54 (359)
415 2og2_A Putative signal recogni 91.2 0.098 3.3E-06 54.2 3.0 25 313-337 159-183 (359)
416 3v9p_A DTMP kinase, thymidylat 91.2 0.076 2.6E-06 51.3 2.1 26 312-337 26-51 (227)
417 2g6b_A RAS-related protein RAB 91.2 0.091 3.1E-06 47.5 2.5 23 312-334 11-33 (180)
418 4ag6_A VIRB4 ATPase, type IV s 91.2 0.17 5.8E-06 52.8 4.9 39 309-354 33-71 (392)
419 3kkq_A RAS-related protein M-R 91.2 0.091 3.1E-06 47.8 2.5 23 312-334 19-41 (183)
420 1sq5_A Pantothenate kinase; P- 91.1 0.094 3.2E-06 53.0 2.8 24 313-336 82-105 (308)
421 1g6h_A High-affinity branched- 91.1 0.079 2.7E-06 52.1 2.2 25 311-335 33-57 (257)
422 2cxx_A Probable GTP-binding pr 91.1 0.078 2.7E-06 48.4 2.0 22 313-334 3-24 (190)
423 2d2e_A SUFC protein; ABC-ATPas 91.1 0.096 3.3E-06 51.3 2.7 24 311-334 29-52 (250)
424 2efe_B Small GTP-binding prote 91.1 0.094 3.2E-06 47.5 2.5 23 312-334 13-35 (181)
425 3thx_B DNA mismatch repair pro 91.1 0.12 4.2E-06 59.9 4.0 22 313-334 675-696 (918)
426 2bme_A RAB4A, RAS-related prot 91.0 0.088 3E-06 48.0 2.3 23 312-334 11-33 (186)
427 1m2o_B GTP-binding protein SAR 91.0 0.092 3.2E-06 48.5 2.4 23 311-333 23-45 (190)
428 1yrb_A ATP(GTP)binding protein 91.0 0.17 5.7E-06 49.3 4.4 24 313-336 16-39 (262)
429 2atv_A RERG, RAS-like estrogen 91.0 0.091 3.1E-06 48.6 2.4 25 310-334 27-51 (196)
430 2zu0_C Probable ATP-dependent 91.0 0.099 3.4E-06 51.8 2.7 25 310-334 45-69 (267)
431 1lw7_A Transcriptional regulat 91.0 0.096 3.3E-06 54.2 2.7 25 312-336 171-195 (365)
432 3bwd_D RAC-like GTP-binding pr 91.0 0.11 3.8E-06 47.0 2.9 24 310-333 7-30 (182)
433 3gfo_A Cobalt import ATP-bindi 91.0 0.081 2.8E-06 52.7 2.0 25 311-335 34-58 (275)
434 1ji0_A ABC transporter; ATP bi 90.9 0.086 2.9E-06 51.3 2.2 25 311-335 32-56 (240)
435 3ihw_A Centg3; RAS, centaurin, 90.9 0.11 3.6E-06 47.9 2.7 23 312-334 21-43 (184)
436 3clv_A RAB5 protein, putative; 90.9 0.11 3.6E-06 47.8 2.7 23 312-334 8-30 (208)
437 1mh1_A RAC1; GTP-binding, GTPa 90.9 0.099 3.4E-06 47.5 2.5 22 313-334 7-28 (186)
438 1mv5_A LMRA, multidrug resista 90.9 0.083 2.8E-06 51.5 2.0 25 311-335 28-52 (243)
439 2ff7_A Alpha-hemolysin translo 90.9 0.087 3E-06 51.5 2.2 25 311-335 35-59 (247)
440 2pze_A Cystic fibrosis transme 90.9 0.087 3E-06 50.9 2.2 26 310-335 33-58 (229)
441 2ocp_A DGK, deoxyguanosine kin 90.9 0.094 3.2E-06 50.7 2.4 24 313-336 4-27 (241)
442 2bov_A RAla, RAS-related prote 90.9 0.099 3.4E-06 48.5 2.5 23 312-334 15-37 (206)
443 2olj_A Amino acid ABC transpor 90.9 0.088 3E-06 52.0 2.2 25 311-335 50-74 (263)
444 2gf9_A RAS-related protein RAB 90.8 0.1 3.4E-06 48.0 2.5 22 313-334 24-45 (189)
445 3t1o_A Gliding protein MGLA; G 90.8 0.1 3.5E-06 47.9 2.5 24 312-335 15-38 (198)
446 2cjw_A GTP-binding protein GEM 90.8 0.11 3.8E-06 48.2 2.8 21 313-333 8-28 (192)
447 1z47_A CYSA, putative ABC-tran 90.8 0.098 3.4E-06 54.0 2.6 25 311-335 41-65 (355)
448 3gmt_A Adenylate kinase; ssgci 90.8 0.12 4.1E-06 50.0 3.0 22 314-335 11-32 (230)
449 3ch4_B Pmkase, phosphomevalona 90.8 0.6 2.1E-05 44.0 7.8 23 313-335 13-35 (202)
450 3rlf_A Maltose/maltodextrin im 90.8 0.098 3.4E-06 54.5 2.6 25 311-335 29-53 (381)
451 2v6i_A RNA helicase; membrane, 90.8 0.18 6.1E-06 53.4 4.7 22 311-332 2-24 (431)
452 2iwr_A Centaurin gamma 1; ANK 90.7 0.084 2.9E-06 47.8 1.8 22 313-334 9-30 (178)
453 2qi9_C Vitamin B12 import ATP- 90.7 0.091 3.1E-06 51.5 2.2 25 311-335 26-50 (249)
454 4g1u_C Hemin import ATP-bindin 90.7 0.091 3.1E-06 52.0 2.2 26 310-335 36-61 (266)
455 3c5c_A RAS-like protein 12; GD 90.7 0.11 3.9E-06 47.7 2.7 23 312-334 22-44 (187)
456 2oap_1 GSPE-2, type II secreti 90.7 0.086 2.9E-06 57.3 2.1 26 310-335 259-284 (511)
457 2ghi_A Transport protein; mult 90.7 0.094 3.2E-06 51.7 2.2 26 310-335 45-70 (260)
458 1z63_A Helicase of the SNF2/RA 90.7 1.2 4.3E-05 47.5 11.4 28 310-337 55-82 (500)
459 1tf7_A KAIC; homohexamer, hexa 90.7 0.65 2.2E-05 50.4 9.2 28 310-337 280-307 (525)
460 2ixe_A Antigen peptide transpo 90.7 0.094 3.2E-06 52.0 2.2 26 310-335 44-69 (271)
461 2dby_A GTP-binding protein; GD 90.6 0.38 1.3E-05 49.8 6.9 22 313-334 3-24 (368)
462 1ksh_A ARF-like protein 2; sma 90.6 0.094 3.2E-06 47.9 2.1 25 309-333 16-40 (186)
463 2a5j_A RAS-related protein RAB 90.6 0.11 3.7E-06 47.9 2.5 22 313-334 23-44 (191)
464 3tkl_A RAS-related protein RAB 90.6 0.11 3.8E-06 47.7 2.5 23 312-334 17-39 (196)
465 3t5g_A GTP-binding protein RHE 90.6 0.1 3.5E-06 47.3 2.3 22 312-333 7-28 (181)
466 1q57_A DNA primase/helicase; d 90.6 0.46 1.6E-05 51.3 7.8 26 312-337 243-268 (503)
467 1fzq_A ADP-ribosylation factor 90.5 0.1 3.4E-06 47.8 2.2 23 311-333 16-38 (181)
468 3reg_A RHO-like small GTPase; 90.5 0.11 3.8E-06 47.9 2.5 23 312-334 24-46 (194)
469 1z06_A RAS-related protein RAB 90.5 0.11 3.8E-06 47.7 2.5 23 312-334 21-43 (189)
470 3tqf_A HPR(Ser) kinase; transf 90.5 0.1 3.4E-06 48.2 2.1 24 311-334 16-39 (181)
471 3iev_A GTP-binding protein ERA 90.5 0.36 1.2E-05 48.6 6.5 22 313-334 12-33 (308)
472 1x3s_A RAS-related protein RAB 90.5 0.11 3.9E-06 47.5 2.5 23 312-334 16-38 (195)
473 2it1_A 362AA long hypothetical 90.5 0.11 3.9E-06 53.7 2.7 25 311-335 29-53 (362)
474 3oiy_A Reverse gyrase helicase 90.5 0.56 1.9E-05 48.9 8.2 24 311-334 36-59 (414)
475 2fg5_A RAB-22B, RAS-related pr 90.4 0.11 3.6E-06 48.1 2.2 23 312-334 24-46 (192)
476 2ihy_A ABC transporter, ATP-bi 90.4 0.099 3.4E-06 52.1 2.2 26 310-335 46-71 (279)
477 2yyz_A Sugar ABC transporter, 90.4 0.12 4E-06 53.6 2.8 25 311-335 29-53 (359)
478 3dz8_A RAS-related protein RAB 90.4 0.11 3.7E-06 47.9 2.3 24 312-335 24-47 (191)
479 1vpl_A ABC transporter, ATP-bi 90.4 0.1 3.5E-06 51.4 2.2 25 311-335 41-65 (256)
480 1tq4_A IIGP1, interferon-induc 90.4 0.17 5.7E-06 53.4 4.0 25 311-335 69-93 (413)
481 1vg8_A RAS-related protein RAB 90.4 0.11 3.9E-06 48.2 2.5 23 312-334 9-31 (207)
482 2p5s_A RAS and EF-hand domain 90.4 0.12 4E-06 48.1 2.5 24 311-334 28-51 (199)
483 1zbd_A Rabphilin-3A; G protein 90.4 0.11 3.7E-06 48.3 2.3 22 312-333 9-30 (203)
484 3sqw_A ATP-dependent RNA helic 90.4 1.3 4.5E-05 48.5 11.4 21 310-330 59-79 (579)
485 4f4c_A Multidrug resistance pr 90.4 0.11 3.8E-06 63.0 2.9 26 310-335 1104-1129(1321)
486 1f2t_A RAD50 ABC-ATPase; DNA d 90.3 0.16 5.4E-06 45.5 3.2 23 314-336 26-48 (149)
487 1v43_A Sugar-binding transport 90.3 0.12 4.1E-06 53.7 2.7 25 311-335 37-61 (372)
488 2www_A Methylmalonic aciduria 90.3 0.22 7.5E-06 51.3 4.7 26 312-337 75-100 (349)
489 3cbq_A GTP-binding protein REM 90.3 0.099 3.4E-06 48.7 1.9 21 312-332 24-44 (195)
490 2yz2_A Putative ABC transporte 90.2 0.11 3.7E-06 51.4 2.2 25 311-335 33-57 (266)
491 2bcg_Y Protein YP2, GTP-bindin 90.2 0.11 3.9E-06 48.3 2.3 23 312-334 9-31 (206)
492 3oes_A GTPase rhebl1; small GT 90.2 0.11 3.9E-06 48.2 2.3 24 311-334 24-47 (201)
493 4tmk_A Protein (thymidylate ki 90.2 0.16 5.6E-06 48.4 3.4 27 313-339 5-31 (213)
494 1g29_1 MALK, maltose transport 90.2 0.12 4.2E-06 53.7 2.7 25 311-335 29-53 (372)
495 2gf0_A GTP-binding protein DI- 90.1 0.12 4E-06 47.7 2.2 24 311-334 8-31 (199)
496 2ew1_A RAS-related protein RAB 90.1 0.12 4E-06 48.5 2.3 23 312-334 27-49 (201)
497 2nq2_C Hypothetical ABC transp 90.1 0.11 3.7E-06 51.0 2.1 25 311-335 31-55 (253)
498 3tmk_A Thymidylate kinase; pho 90.1 0.14 4.7E-06 49.1 2.8 25 312-336 6-30 (216)
499 3d31_A Sulfate/molybdate ABC t 90.1 0.1 3.5E-06 53.8 2.0 25 311-335 26-50 (348)
500 1s2m_A Putative ATP-dependent 90.1 1.8 6E-05 44.5 11.5 22 312-333 59-80 (400)
No 1
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=100.00 E-value=4.5e-62 Score=532.84 Aligned_cols=430 Identities=44% Similarity=0.692 Sum_probs=367.9
Q ss_pred chHHHhhHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHhhcCCCc--HHHHHHCCCCHHHHHHHHHHHhhcCCCCCCchhh
Q 007723 80 SVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAREAVVSIWHSTNNQDTDDAA 157 (591)
Q Consensus 80 ~~~~~fT~~a~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~--~~~L~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~ 157 (591)
|||++||++++++|..|+.+|+++||++|+|||||+|||.++++ ..+|..+|+|++.++.++...++..+..
T Consensus 1 mm~~~ft~~a~~al~~A~~~A~~~~h~~v~~eHLLlaLl~~~~~~~~~iL~~~gvd~~~l~~~l~~~l~~~~~~------ 74 (468)
T 3pxg_A 1 MMFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVESLIGRGQEM------ 74 (468)
T ss_dssp --CCCBCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSCCSHHHHHHHHHTCCHHHHHHHHHTTSCCCCTT------
T ss_pred CcchhhCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhccCcHHHHHHHHcCCCHHHHHHHHHHHhcccCCC------
Confidence 58999999999999999999999999999999999999999877 7899999999999999999887765421
Q ss_pred ccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhhhcccchhhHHHHHhCCCHHHHHHHHHHHhhhhh
Q 007723 158 AQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGEL 237 (591)
Q Consensus 158 ~~~~~~~~~~~~~~S~~~k~vL~~A~~~A~~~g~~~I~~ehLLlall~~~~~~a~~iL~~~gv~~~~l~~~i~~~l~~~~ 237 (591)
...++||+.++++|+.|..+|+++|+.+|+++|||+||++++++.+.++|.++|++.+.+++.+...+++..
T Consensus 75 --------~~~~~~S~~~~~vL~~A~~~A~~~g~~~I~teHLLlaLl~~~~~~a~~iL~~~gv~~~~l~~~i~~~~~~~~ 146 (468)
T 3pxg_A 75 --------SQTIHYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNE 146 (468)
T ss_dssp --------CSSCEECHHHHHHHHHHHHHHHTTTCSSBCHHHHHHHHHHTCCSHHHHHHHHTTCCHHHHHHHHHTTCCCCC
T ss_pred --------CCCCCCCHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHhcccchHHHHHHHcCCCHHHHHHHHHHHhccCc
Confidence 234789999999999999999999999999999999999999999999999999999999988765442110
Q ss_pred hccCCCCcccccccccccccccccCCCCCCCCchHHHhhchhcccccccCCCCccCCcHHHHHHHHHHHHhcCCCCCeEe
Q 007723 238 AKEGREPSLAKGVRENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317 (591)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~r~~~~~~vvG~~~~i~~l~~~L~~~~~~~ilL~ 317 (591)
... .. .+...+...+.|++|+.+|++++++++|+++||++++++++++++.++.++|+||+
T Consensus 147 -----~~~-----------~~---~~~~~~~~~~~l~~~~~~l~~~~r~~~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~ 207 (468)
T 3pxg_A 147 -----TGS-----------SA---AGTNSNANTPTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLI 207 (468)
T ss_dssp -----TTC-------------------CCSTHHHHHHSSCCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEE
T ss_pred -----ccc-----------cc---cCcCCccCchHHHHHHHHHHHHHhcCCCCCccCcHHHHHHHHHHHhccCCCCeEEE
Confidence 000 00 00112334678999999999999999999999999999999999999999999999
Q ss_pred cCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcC
Q 007723 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGS 397 (591)
Q Consensus 318 GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~ 397 (591)
||||||||++|+++|+.+.++.+|..+.+..++.+|++ ..+.|+++.+++.+++.+...+++||||| .
T Consensus 208 G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~-----~~~~g~~e~~~~~~~~~~~~~~~~iLfiD----~--- 275 (468)
T 3pxg_A 208 GEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG-----TKYRGEFEDRLKKVMDEIRQAGNIILFID----A--- 275 (468)
T ss_dssp SCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------CTTHHHHHHHHHTCCCCEEEEC----C---
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC-----ccccchHHHHHHHHHHHHHhcCCeEEEEe----C---
Confidence 99999999999999999999999999999999999876 45788888899999999988888999999 1
Q ss_pred CCCCCCCCCccHHHHHhhcccccCCcEEEEecCChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHhhc
Q 007723 398 GTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHH 477 (591)
Q Consensus 398 ~~~~~~~~~~~~~~~n~L~~~le~g~v~lI~att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~ 477 (591)
..+++|.|++.|+++.+++|++||.++|++.+.++++|.+||++|.|.+|+.+++..||+.++.+|+.+|
T Consensus 276 ----------~~~a~~~L~~~L~~g~v~vI~at~~~e~~~~~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~~~~~~~~ 345 (468)
T 3pxg_A 276 ----------AIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHH 345 (468)
T ss_dssp ------------------CCCTTSSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGS
T ss_pred ----------chhHHHHHHHhhcCCCEEEEecCCHHHHHHHhhcCHHHHHhCccceeCCCCHHHHHHHHHHHHHHHHHhc
Confidence 4467899999999999999999999999988999999999999999999999999999999999998999
Q ss_pred CCCCcHHHHHHHHHHhHHhhhcCCCcHHHHHHHHHHhhHhhhhhhccchhhhhhhhcCChHHHHHHHHHHhhcchHHHHh
Q 007723 478 NCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGS 557 (591)
Q Consensus 478 ~i~i~~~al~~l~~~s~r~i~~~~lp~~ai~lld~a~a~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~d~~~a~ 557 (591)
++.++++++.+++.++.+|+.++.+|+++++++|+|++++++.....|.+ +.++...++....++..++..+||+++.
T Consensus 346 ~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll~~a~~~~~~~~~~~p~~--i~~l~~~i~~l~~~~~~~~~~~d~~~~~ 423 (468)
T 3pxg_A 346 RVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLRSFTTPPN--LKELEQKLDEVRKEKDAAVQSQEFEKAA 423 (468)
T ss_dssp SCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHHHHHTTSCCSS--THHHHHHHHHHHHHHHHHHHHCCSHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHhccCcCCcHHHHHHHHHHHHHHhccCCCchH--HHHHHHHHHHHHHHHHHHHhCcCHHHHH
Confidence 99999999999999999999999999999999999999999998888877 6777777777777778889999999999
Q ss_pred hchhhHhhh
Q 007723 558 RLKYDDVVA 566 (591)
Q Consensus 558 ~~~~~~~~~ 566 (591)
+++++..+.
T Consensus 424 ~l~~~~~~~ 432 (468)
T 3pxg_A 424 SLRDTEQRL 432 (468)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998766553
No 2
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=100.00 E-value=8.1e-58 Score=527.79 Aligned_cols=428 Identities=44% Similarity=0.702 Sum_probs=361.0
Q ss_pred chHHHhhHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHhhcCCCc--HHHHHHCCCCHHHHHHHHHHHhhcCCCCCCchhh
Q 007723 80 SVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAREAVVSIWHSTNNQDTDDAA 157 (591)
Q Consensus 80 ~~~~~fT~~a~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~--~~~L~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~ 157 (591)
|||++||++++++|..|+++|+++||++|+|||||+|||.++++ .++|..+|+|++.+++++...+++.+..
T Consensus 1 mm~~~~t~~a~~~l~~A~~~A~~~~h~~i~~eHlLlaLl~~~~~~~~~iL~~~gvd~~~l~~~l~~~l~~~~~~------ 74 (758)
T 3pxi_A 1 MMFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVESLIGRGQEM------ 74 (758)
T ss_dssp --CCCBCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSCCSHHHHHHHHHTCCHHHHHHHHHTTSCCCCTT------
T ss_pred CchhhhCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhccCcHHHHHHHHcCCCHHHHHHHHHHHhccCCCC------
Confidence 58999999999999999999999999999999999999998877 7899999999999999999888776431
Q ss_pred ccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhhhcccchhhHHHHHhCCCHHHHHHHHHHHhhhhh
Q 007723 158 AQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGEL 237 (591)
Q Consensus 158 ~~~~~~~~~~~~~~S~~~k~vL~~A~~~A~~~g~~~I~~ehLLlall~~~~~~a~~iL~~~gv~~~~l~~~i~~~l~~~~ 237 (591)
...++||+.+++||+.|..+|+++|+++|+++|||+||++++++.+.++|+++|++.+.+++.+.+.+++.
T Consensus 75 --------~~~~~~s~~~~~vl~~A~~~A~~~~~~~I~~ehlLlall~~~~~~a~~~L~~~gv~~~~l~~~i~~~~~~~- 145 (758)
T 3pxi_A 75 --------SQTIHYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSN- 145 (758)
T ss_dssp --------CSSCEECHHHHHHHHHHHHHHHTTTCSSBCHHHHHHHHHHTCCSHHHHHHHHTTCCHHHHHHHHHTTCCCC-
T ss_pred --------CCCCCCCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhcCCcHHHHHHHHcCCCHHHHHHHHHHHhcCC-
Confidence 23588999999999999999999999999999999999999999999999999999999998876544211
Q ss_pred hccCCCCcccccccccccccccccCCCCCCCCchHHHhhchhcccccccCCCCccCCcHHHHHHHHHHHHhcCCCCCeEe
Q 007723 238 AKEGREPSLAKGVRENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317 (591)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~r~~~~~~vvG~~~~i~~l~~~L~~~~~~~ilL~ 317 (591)
.. .+.. ....++...+.|++|+.+|+++++++.|+++||++++++++++++.++.++|+||+
T Consensus 146 ------~~----------~~~~--~~~~~~~~~~~l~~~~~~l~~~~~~~~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~ 207 (758)
T 3pxi_A 146 ------ET----------GSSA--AGTNSNANTPTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLI 207 (758)
T ss_dssp ------CT----------TC-------CCSTHHHHHHSSCCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEE
T ss_pred ------cc----------cccc--cccccchhhhHHHHHHHHHHHHHhhCCCCCccCchHHHHHHHHHHhCCCCCCeEEE
Confidence 00 0000 00112345688999999999999999999999999999999999999999999999
Q ss_pred cCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcC
Q 007723 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGS 397 (591)
Q Consensus 318 GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~ 397 (591)
||||||||++|+++|+.+.++++|..+.++.++.+|+ |.+++|+++.+++.++..+...+++||||| .
T Consensus 208 G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~-----g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD----~--- 275 (758)
T 3pxi_A 208 GEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM-----GTKYRGEFEDRLKKVMDEIRQAGNIILFID----A--- 275 (758)
T ss_dssp SCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------CTTHHHHHHHHHTCCCCEEEEC----C---
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc-----cccccchHHHHHHHHHHHHHhcCCEEEEEc----C---
Confidence 9999999999999999999999999999999999987 677899999999999999988889999999 1
Q ss_pred CCCCCCCCCccHHHHHhhcccccCCcEEEEecCChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHhhc
Q 007723 398 GTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHH 477 (591)
Q Consensus 398 ~~~~~~~~~~~~~~~n~L~~~le~g~v~lI~att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~ 477 (591)
..+.++.|++.++++.+++|++||..+|.+.+.++++|.+||+.|.|++|+.+++.+||+.+..+++.++
T Consensus 276 ----------~~~~~~~L~~~l~~~~v~~I~at~~~~~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~~~~~ 345 (758)
T 3pxi_A 276 ----------AIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHH 345 (758)
T ss_dssp ------------------CCCTTSSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGS
T ss_pred ----------chhHHHHHHHHHhcCCEEEEeCCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHhc
Confidence 4467899999999999999999999999988999999999999999999999999999999999998899
Q ss_pred CCCCcHHHHHHHHHHhHHhhhcCCCcHHHHHHHHHHhhHhhhhhhccchhhhhhhhcCChHHHHHHHHHHhhcchHHHHh
Q 007723 478 NCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGS 557 (591)
Q Consensus 478 ~i~i~~~al~~l~~~s~r~i~~~~lp~~ai~lld~a~a~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~d~~~a~ 557 (591)
++.++++++..++.++.+|+.++++|+++++++|+|++.+++.....+.+ +..+...++....+...++..+|++.+.
T Consensus 346 ~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ll~~a~~~~~~~~~~~p~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 423 (758)
T 3pxi_A 346 RVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLRSFTTPPN--LKELEQKLDEVRKEKDAAVQSQEFEKAA 423 (758)
T ss_dssp SCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHHHHHTTC--CC--THHHHHHHHHHHHHHHHHHHHCCSHHHH
T ss_pred CCCCCHHHHHHHHHHhhcccccCcCCcHHHHHHHHHHHHHHhhccCCCcc--hhhHHHHHHHHHHHHHHHHhCcCHHHHH
Confidence 99999999999999999999999999999999999999999988877665 5556666666666666777888888887
Q ss_pred hchhhHh
Q 007723 558 RLKYDDV 564 (591)
Q Consensus 558 ~~~~~~~ 564 (591)
.++++..
T Consensus 424 ~l~~~~~ 430 (758)
T 3pxi_A 424 SLRDTEQ 430 (758)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7765443
No 3
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=100.00 E-value=3.7e-54 Score=502.73 Aligned_cols=399 Identities=41% Similarity=0.599 Sum_probs=327.0
Q ss_pred chHHHhhHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHhhcCCCc--HHHHHHCCCCHHHHHHHHHHHhhcCCCCCCchhh
Q 007723 80 SVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAREAVVSIWHSTNNQDTDDAA 157 (591)
Q Consensus 80 ~~~~~fT~~a~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~--~~~L~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~ 157 (591)
|||++||++++++|..|+.+|+++||.+|+|||||+|||.++++ ..+|..+|+|++.++.++...+++.+..
T Consensus 1 ~~~~~~t~~a~~al~~A~~~A~~~~h~~i~~eHLLlaLl~~~~~~~~~iL~~~gvd~~~l~~~l~~~l~~~p~~------ 74 (854)
T 1qvr_A 1 MNLERWTQAAREALAQAQVLAQRMKHQAIDLPHLWAVLLKDERSLAWRLLEKAGADPKALKELQERELARLPKV------ 74 (854)
T ss_dssp ---CCSCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHCCSSSSHHHHHHHTTSSCHHHHHHHHHHHHHTSCCC------
T ss_pred CChhhhCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCcHHHHHHHHcCCCHHHHHHHHHHHHhhCCCC------
Confidence 57899999999999999999999999999999999999998887 7899999999999999999999887542
Q ss_pred ccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhhhcccchhhHHHHHhCCCHHHHHHHHHHHhhhhh
Q 007723 158 AQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGEL 237 (591)
Q Consensus 158 ~~~~~~~~~~~~~~S~~~k~vL~~A~~~A~~~g~~~I~~ehLLlall~~~~~~a~~iL~~~gv~~~~l~~~i~~~l~~~~ 237 (591)
.+....++||+.++++|+.|..+|+.+|+.||+++|||+||++++++ + ++..+++..+.... +.
T Consensus 75 -----~~~~~~~~~S~~~~~vL~~A~~~a~~~g~~~I~~ehlLlall~~~~~-~--------~~~~~~~~~~~~~~-~~- 138 (854)
T 1qvr_A 75 -----EGAEVGQYLTSRLSGALNRAEGLMEELKDRYVAVDTLVLALAEATPG-L--------PGLEALKGALKELR-GG- 138 (854)
T ss_dssp -----CGGGTTCEECHHHHHHHHHHHHHHHTTTCSSCCHHHHHHHHHHHSTT-S--------CCHHHHHHHHTSSC-SC-
T ss_pred -----CCCCCCCCCCHHHHHHHHHHHHHHHHcCCcEeeHHHHHHHHHhcccc-c--------CCHHHHHHHHHHhc-cc-
Confidence 12234688999999999999999999999999999999999987654 2 78887776543211 00
Q ss_pred hccCCCCcccccccccccccccccCCCCCCCCchHHHhhchhcccccccCCCCccCCcHHHHHHHHHHHHhcCCCCCeEe
Q 007723 238 AKEGREPSLAKGVRENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILL 317 (591)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~r~~~~~~vvG~~~~i~~l~~~L~~~~~~~ilL~ 317 (591)
. ... +..++...+.|++|+.||++++++++|++++|++++++++++++.++.+++++|+
T Consensus 139 -----~----------~~~------~~~~~~~~~~l~~~~~~l~~~~r~~~ld~viGr~~~i~~l~~~l~~~~~~~vlL~ 197 (854)
T 1qvr_A 139 -----R----------TVQ------TEHAESTYNALEQYGIDLTRLAAEGKLDPVIGRDEEIRRVIQILLRRTKNNPVLI 197 (854)
T ss_dssp -----C----------SSC------SSCCCCCCSHHHHHEEEHHHHHHTTCSCCCCSCHHHHHHHHHHHHCSSCCCCEEE
T ss_pred -----c----------ccc------cccccccchhHHHHHHhHHHHHhcCCCcccCCcHHHHHHHHHHHhcCCCCceEEE
Confidence 0 000 1112334578999999999999999999999999999999999999999999999
Q ss_pred cCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhccccccchHHHHHHHHHHHHHhc-CCeEEEEcCcchhhc
Q 007723 318 GESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKS-GDVILFIDEVHTLIG 396 (591)
Q Consensus 318 GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~~~-~~~ILfIDEi~~L~~ 396 (591)
||||||||++++++++.+..+.+|..+.+..++.++++.+..|.++.|+++.+++.++..+... ++.||||||+|.+.+
T Consensus 198 G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~ 277 (854)
T 1qvr_A 198 GEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVG 277 (854)
T ss_dssp ECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC-----
T ss_pred cCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhc
Confidence 9999999999999999999999998888999999999999989899999999999999998865 678999999999987
Q ss_pred CCCCCCCCCCccHHHHHhhcccccCCcEEEEecCChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHhh
Q 007723 397 SGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAH 476 (591)
Q Consensus 397 ~~~~~~~~~~~~~~~~n~L~~~le~g~v~lI~att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~ 476 (591)
.+.. .+..++.+.|++.++++.+++|++||.++|.. +.++++|.+||+.|.+++|+.+++.+||+.+..+++.+
T Consensus 278 ~~~~-----~g~~~~~~~L~~~l~~~~i~~I~at~~~~~~~-~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~~~~~~~ 351 (854)
T 1qvr_A 278 AGKA-----EGAVDAGNMLKPALARGELRLIGATTLDEYRE-IEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVH 351 (854)
T ss_dssp -------------------HHHHHTTCCCEEEEECHHHHHH-HTTCTTTCSCCCCEEECCCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCc-----cchHHHHHHHHHHHhCCCeEEEEecCchHHhh-hccCHHHHhCCceEEeCCCCHHHHHHHHHhhhhhhhhh
Confidence 6543 33567889999999999999999999999887 78899999999999999999999999999999999999
Q ss_pred cCCCCcHHHHHHHHHHhHHhhhcCCCcHHHHHHHHHHhhHhhhhhhccchh
Q 007723 477 HNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKE 527 (591)
Q Consensus 477 ~~i~i~~~al~~l~~~s~r~i~~~~lp~~ai~lld~a~a~~~~~~~~~~~~ 527 (591)
|++.++++++..++.++.+|+.++++|+++++++|+|++..++.....|.+
T Consensus 352 ~~~~i~~~al~~~~~ls~r~i~~~~lp~kai~lldea~a~~~~~~~~~p~~ 402 (854)
T 1qvr_A 352 HGVRISDSAIIAAATLSHRYITERRLPDKAIDLIDEAAARLRMALESAPEE 402 (854)
T ss_dssp TTCEECHHHHHHHHHHHHHHCCSSCTHHHHHHHHHHHHHHHHHTTTTHHHH
T ss_pred cCCCCCHHHHHHHHHHHhhhcccccChHHHHHHHHHHHHHHHhhccCCchh
Confidence 999999999999999999999999999999999999999999887766654
No 4
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=100.00 E-value=1.4e-52 Score=484.44 Aligned_cols=407 Identities=38% Similarity=0.603 Sum_probs=348.2
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHhhcCCCcHHHHHHCCCCHHHHHHHHHHHhhc-CCCCCCchhhccCCCC
Q 007723 85 FTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAVVSIWHS-TNNQDTDDAAAQGKPF 163 (591)
Q Consensus 85 fT~~a~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~L~~~gi~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~ 163 (591)
||++++++|..|+.+|++++|.+|+|||||+|||.+++...+|..+|+|++.++++++..+++ .+.. .
T Consensus 2 ~t~~a~~~l~~A~~~A~~~~h~~i~~eHLLlaLl~~~~~~~iL~~~gvd~~~l~~~l~~~l~~~~p~~-----------~ 70 (758)
T 1r6b_X 2 LNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVL-----------P 70 (758)
T ss_dssp BCHHHHHHHHHHHHHHHHTTBSEECHHHHHHHHTTSHHHHHHHHHTTCCHHHHHHHHHHHHHHHSCBC-----------C
T ss_pred CCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHhccCCCC-----------C
Confidence 899999999999999999999999999999999986555889999999999999999999987 4321 1
Q ss_pred C--CCCCCCCCHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhhhcccchhhHHHHHhCCCHHHHHHHHHHHhhhhhhccC
Q 007723 164 S--SAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQGELAKEG 241 (591)
Q Consensus 164 ~--~~~~~~~S~~~k~vL~~A~~~A~~~g~~~I~~ehLLlall~~~~~~a~~iL~~~gv~~~~l~~~i~~~l~~~~~~~~ 241 (591)
+ ....++||+.++++|+.|..+|+.+|+++|+++|||+||++++++.+.++|+++|++..++.+.+....... +
T Consensus 71 ~~~~~~~~~~s~~~~~vl~~A~~~a~~~~~~~I~~ehlLlall~~~~~~a~~~L~~~gi~~~~l~~~i~~~~~~~----~ 146 (758)
T 1r6b_X 71 ASEEERDTQPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKD----E 146 (758)
T ss_dssp CSSSCCCCEECHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHTTCTTCHHHHHHHHTTCCHHHHHHHHHTC---------
T ss_pred CccccCCCCcCHHHHHHHHHHHHHHHHcCCCEeeHHHHHHHHhccccchHHHHHHHcCCCHHHHHHHHHHhhccc----c
Confidence 1 124688999999999999999999999999999999999998888899999999999998877654321100 0
Q ss_pred CCCcccccccccccccccccCCCCCCCCchHHHhhchhcccccccCCCCccCCcHHHHHHHHHHHHhcCCCCCeEecCCC
Q 007723 242 REPSLAKGVRENSISGKTAALKSPGRTRASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESG 321 (591)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~r~~~~~~vvG~~~~i~~l~~~L~~~~~~~ilL~GppG 321 (591)
...+ ...+. ...+..++...+.|++|+.+|++++++++|++++|+++++++++++|.++.+++++|+||||
T Consensus 147 ~~~~--------~~~~~-~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~G 217 (758)
T 1r6b_X 147 PTQS--------SDPGS-QPNSEEQAGGEERLENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESG 217 (758)
T ss_dssp -------------------------------CCSSSCBHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTT
T ss_pred cccc--------ccccc-cccccccccchhHHHHHhHhHHHHHhcCCCCCccCCHHHHHHHHHHHhccCCCCeEEEcCCC
Confidence 0000 00000 00001122345789999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCC
Q 007723 322 VGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVG 401 (591)
Q Consensus 322 vGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~ 401 (591)
||||++|+++++.+.++.+|..+.++.++.++++.+..|.++.|+++.+++.+++.+....+.||||||+|.+.+.+...
T Consensus 218 tGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~ 297 (758)
T 1r6b_X 218 VGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAAS 297 (758)
T ss_dssp SSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSS
T ss_pred CCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCC
Confidence 99999999999999999999999999999999999998888999999999999999877778999999999998776542
Q ss_pred CCCCCccHHHHHhhcccccCCcEEEEecCChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHhhcCCCC
Q 007723 402 RGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKF 481 (591)
Q Consensus 402 ~~~~~~~~~~~n~L~~~le~g~v~lI~att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i 481 (591)
.+..++.+.|+++++++.+++|++||.++|.+.+..|++|.+||+.+.|.+|+.+++.+||+.+...|+.+|++.+
T Consensus 298 ----~~~~~~~~~L~~~l~~~~~~~I~at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~ 373 (758)
T 1r6b_X 298 ----GGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRY 373 (758)
T ss_dssp ----SCHHHHHHHHSSCSSSCCCEEEEEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred ----cchHHHHHHHHHHHhCCCeEEEEEeCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 2377889999999999999999999999998888899999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHhHHhhhcCCCcHHHHHHHHHHhhHhhh
Q 007723 482 TLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHI 519 (591)
Q Consensus 482 ~~~al~~l~~~s~r~i~~~~lp~~ai~lld~a~a~~~~ 519 (591)
++++++.++.++.+|+.++.+|+++++++|+|++..++
T Consensus 374 ~~~al~~~~~~s~~~i~~~~lp~~~i~lld~a~~~~~~ 411 (758)
T 1r6b_X 374 TAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARL 411 (758)
T ss_dssp CHHHHHHHHHHHHHHCTTSCTTHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhhhcccccCchHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999987776
No 5
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=99.93 E-value=1.6e-25 Score=205.61 Aligned_cols=141 Identities=31% Similarity=0.559 Sum_probs=130.7
Q ss_pred chHHHhhHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHhhcCCCc--HHHHHHCCCCHHHHHHHHHHHhhcCCCCCCchhh
Q 007723 80 SVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAREAVVSIWHSTNNQDTDDAA 157 (591)
Q Consensus 80 ~~~~~fT~~a~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~--~~~L~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~ 157 (591)
+||++||++++++|..|+.+|++++|.+|+|||||+||+.++++ .++|..+|+|++.+++++...+++.+.
T Consensus 2 ~m~~~~t~~~~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~~iL~~~gv~~~~l~~~l~~~l~~~~~------- 74 (146)
T 3fh2_A 2 AMFERFTDRARRVIVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESMGISLDAVRQEVEEIIGQGSQ------- 74 (146)
T ss_dssp GGGGGBCHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCSHHHHHHHHTTCCHHHHHHHHHHHHCCCSC-------
T ss_pred chhhhcCHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHhCCCChHHHHHHHcCCCHHHHHHHHHHHhccCCC-------
Confidence 68999999999999999999999999999999999999988776 789999999999999999999987643
Q ss_pred ccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhhhcccchhhHHHHHhCCCHHHHHHHHHHHh
Q 007723 158 AQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRL 233 (591)
Q Consensus 158 ~~~~~~~~~~~~~~S~~~k~vL~~A~~~A~~~g~~~I~~ehLLlall~~~~~~a~~iL~~~gv~~~~l~~~i~~~l 233 (591)
+....+++|+.++++|+.|..+|+++|+.||+++|||+||++++++.+.++|+++||+.+.+++.+...+
T Consensus 75 ------~~~~~~~~s~~~~~vL~~A~~~a~~~~~~~i~~eHlLlall~~~~~~a~~iL~~~gv~~~~l~~~l~~~~ 144 (146)
T 3fh2_A 75 ------PTTGHIPFTPRAKKVLELSLREGLQMGHKYIGTEFLLLGLIREGEGVAAQVLVKLGADLPRVRQQVIQLL 144 (146)
T ss_dssp ------CCCSCCCBCHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCSSHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred ------CCcCCCcCCHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHhCCCcHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 2235689999999999999999999999999999999999998889999999999999999999887665
No 6
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=99.91 E-value=1.5e-24 Score=198.90 Aligned_cols=139 Identities=28% Similarity=0.439 Sum_probs=127.1
Q ss_pred chHHHhhHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHhhcCCCc--HHHHHHCCCCHHHHHHHHHHHhhcCCCCCCchhh
Q 007723 80 SVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAREAVVSIWHSTNNQDTDDAA 157 (591)
Q Consensus 80 ~~~~~fT~~a~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~--~~~L~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~ 157 (591)
..|++||++++++|+.|+.+|++++|++|+|||||+|||.++++ ..+|..+|+|++.+++.+...+++.+.
T Consensus 3 ~~~~~~T~~a~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~~iL~~~gvd~~~l~~~l~~~l~~~~~------- 75 (145)
T 3fes_A 3 ANFNRFTQRAKKAIDLAFESAKSLGHNIVGSEHILLGLLREEEGIAAKVLSKVGFTEAYLEGKIVDMEGKGEE------- 75 (145)
T ss_dssp -CCCCBCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHCSSHHHHHHHHHTCCHHHHHHHHHHHHCCCSC-------
T ss_pred CcccccCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCChHHHHHHHcCCCHHHHHHHHHHHHhcCCC-------
Confidence 45778999999999999999999999999999999999998876 789999999999999999999987642
Q ss_pred ccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhhhcccchhhHHHHHhCCCHHHHHHHHHHH
Q 007723 158 AQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSR 232 (591)
Q Consensus 158 ~~~~~~~~~~~~~~S~~~k~vL~~A~~~A~~~g~~~I~~ehLLlall~~~~~~a~~iL~~~gv~~~~l~~~i~~~ 232 (591)
.+..++||+.++++|+.|..+|+++|+.||+++|||+||++++++.+.++|+++||+.+.+++.+...
T Consensus 76 -------~~~~~~~s~~~~~vl~~A~~~A~~~~~~~v~~eHlLlAll~~~~~~a~~iL~~~gv~~~~l~~~i~~~ 143 (145)
T 3fes_A 76 -------ISEDIVLSPRSKQILELSGMFANKLKTNYIGTEHILLAIIQEGEGIANKILNYAGVNDRTLAQLTIDM 143 (145)
T ss_dssp -------CCSCCEECHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHHHHHHT
T ss_pred -------CCCCCCCCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhCCCcHHHHHHHHcCCCHHHHHHHHHHH
Confidence 12458899999999999999999999999999999999999888899999999999999999887654
No 7
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=99.91 E-value=6.8e-24 Score=195.57 Aligned_cols=140 Identities=32% Similarity=0.524 Sum_probs=124.7
Q ss_pred chHHHhhHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHhhcCCCc--HHHHHHCCCCHHHHHHHHHHHhhcCCCCCCchhh
Q 007723 80 SVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAREAVVSIWHSTNNQDTDDAA 157 (591)
Q Consensus 80 ~~~~~fT~~a~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~--~~~L~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~ 157 (591)
|||++||++++++|..|+.+|+++||.+|+|||||+|||.++++ ..+|+.+|+|++.++..++..+++.+..
T Consensus 1 M~~~~~t~~~~~al~~A~~~A~~~~h~~i~~eHlLlaLl~~~~~~~~~iL~~~g~~~~~l~~~l~~~l~~~~~~------ 74 (150)
T 2y1q_A 1 MMFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVESLIGRAQEM------ 74 (150)
T ss_dssp ---CCBCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHCSSHHHHHHHHTTCCHHHHHHHHHHHHCCC---------
T ss_pred CcchhhCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCCHHHHHHHHcCCCHHHHHHHHHHHhccCCcc------
Confidence 57899999999999999999999999999999999999998876 7899999999999999999999876432
Q ss_pred ccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhhhcccchhhHHHHHhCCCHHHHHHHHHHHh
Q 007723 158 AQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRL 233 (591)
Q Consensus 158 ~~~~~~~~~~~~~~S~~~k~vL~~A~~~A~~~g~~~I~~ehLLlall~~~~~~a~~iL~~~gv~~~~l~~~i~~~l 233 (591)
.+.++||+.++++|+.|..+|+++|+.||+++|||+||+.++++.+.++|+++|++.+.+++.+....
T Consensus 75 --------~~~~~~s~~~~~vL~~A~~~A~~~~~~~i~~ehlLlall~~~~~~a~~~L~~~gi~~~~l~~~i~~~~ 142 (150)
T 2y1q_A 75 --------SQTIHYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLL 142 (150)
T ss_dssp ----------CCEECHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCSHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred --------cccCCCCHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHhCCCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 13678999999999999999999999999999999999998888888999999999999998876554
No 8
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=99.90 E-value=1.1e-23 Score=193.56 Aligned_cols=139 Identities=18% Similarity=0.238 Sum_probs=120.7
Q ss_pred chHHHhhHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHhhcCCCc--HHHHHHCCCCHHHHHHHHHHHhhcCCCCCCchhh
Q 007723 80 SVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAREAVVSIWHSTNNQDTDDAA 157 (591)
Q Consensus 80 ~~~~~fT~~a~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~--~~~L~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~ 157 (591)
|||++||++++++|..|+.+|++++|.+|+|||||+|||.++++ ..+|..+|+|++.++..++..+++.+..
T Consensus 1 M~~~~~t~~~~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~~~~~~~iL~~~g~~~~~l~~~l~~~l~~~p~~------ 74 (148)
T 1khy_A 1 MRLDRLTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSVSPLLTSAGINAGQLRTDINQALNRLPQV------ 74 (148)
T ss_dssp ---CCBCHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHTCTTCSHHHHHHHHTCCHHHHHHHHHHHHTTSCCC------
T ss_pred CChhhhhHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHcCCCchHHHHHHHcCCCHHHHHHHHHHHHHhCCCC------
Confidence 57899999999999999999999999999999999999998876 7899999999999999999999887542
Q ss_pred ccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhhhcccchhhHHHHHhCCCHHHHHHHHH
Q 007723 158 AQGKPFSSAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAV 230 (591)
Q Consensus 158 ~~~~~~~~~~~~~~S~~~k~vL~~A~~~A~~~g~~~I~~ehLLlall~~~~~~a~~iL~~~gv~~~~l~~~i~ 230 (591)
.+....++||+.++++|+.|..+|+.+|+.||+++|||+||+ ++++.+.++|+.+|++.+.+++.+.
T Consensus 75 -----~~~~~~~~~s~~~~~vl~~A~~~a~~~~~~~i~~ehlLlall-~~~~~~~~~L~~~gi~~~~l~~~l~ 141 (148)
T 1khy_A 75 -----EGTGGDVQPSQDLVRVLNLCDKLAQKRGDNFISSELFVLAAL-ESRGTLADILKAAGATTANITQAIE 141 (148)
T ss_dssp ------------CBCHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHH-TSCHHHHHHHHHTTCCHHHHHHHHH
T ss_pred -----CCCCCCcCcCHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHH-cCCcHHHHHHHHcCCCHHHHHHHHH
Confidence 121245789999999999999999999999999999999999 5567889999999999999988664
No 9
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.90 E-value=8.5e-24 Score=200.13 Aligned_cols=192 Identities=56% Similarity=0.924 Sum_probs=162.4
Q ss_pred chHHHhhchhcccccccCCCCccCCcHHHHHHHHHHHHhcCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceE
Q 007723 270 ASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRI 349 (591)
Q Consensus 270 ~~~l~~~~~~l~~~~r~~~~~~vvG~~~~i~~l~~~L~~~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~ 349 (591)
.+.|++++.+|++++++..|++++|++++++.+.+.+......+++|+||||||||++++.+++.+.+...+....+..+
T Consensus 2 ~~~l~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~ 81 (195)
T 1jbk_A 2 MQALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRV 81 (195)
T ss_dssp CHHHHHHEEEHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEE
T ss_pred chHHHHHhHHHHHHHhhccccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcE
Confidence 46799999999999999999999999999999999998877789999999999999999999999988777766678899
Q ss_pred EEeehhhhhccccccchHHHHHHHHHHHHHhc-CCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCCcEEEEe
Q 007723 350 MSLDMGLLMAGAKERGELEARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIA 428 (591)
Q Consensus 350 ~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~~~-~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g~v~lI~ 428 (591)
+.+++..+..+..+.+.+...++.++..+... .+.||||||+|.+...+.. ....++.+.|+..++.+.+.+|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~-----~~~~~~~~~l~~~~~~~~~~~i~ 156 (195)
T 1jbk_A 82 LALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKA-----DGAMDAGNMLKPALARGELHCVG 156 (195)
T ss_dssp EEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT-----------CCCCHHHHHHHHHTTSCCEEE
T ss_pred EEeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcc-----cchHHHHHHHHHhhccCCeEEEE
Confidence 99999988877777788888888888877554 4679999999999654321 12345677888888888999999
Q ss_pred cCChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHH
Q 007723 429 STTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRIL 466 (591)
Q Consensus 429 att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL 466 (591)
+++..++.....+++++.+||..+.+..|+.+++.++|
T Consensus 157 ~~~~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 157 ATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp EECHHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred eCCHHHHHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 99998877777789999999999999999999988765
No 10
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.89 E-value=1.8e-23 Score=197.50 Aligned_cols=184 Identities=58% Similarity=0.927 Sum_probs=157.1
Q ss_pred hHHHhhchhcccccccCCCCccCCcHHHHHHHHHHHHhcCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEE
Q 007723 271 SALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIM 350 (591)
Q Consensus 271 ~~l~~~~~~l~~~~r~~~~~~vvG~~~~i~~l~~~L~~~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~ 350 (591)
+.|++|+.+|.+++++..|++++|++++++.+.+.+......+++|+||||||||++++.+++.+.....|....+..++
T Consensus 3 ~~l~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~ 82 (187)
T 2p65_A 3 QALEKYSRDLTALARAGKLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLV 82 (187)
T ss_dssp CCTTTTEEEHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEE
T ss_pred hHHHHHHHHHHHHHhccccchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEE
Confidence 46889999999999999999999999999999999988778899999999999999999999999887777766788999
Q ss_pred EeehhhhhccccccchHHHHHHHHHHHHHhc-CCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCCcEEEEec
Q 007723 351 SLDMGLLMAGAKERGELEARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIAS 429 (591)
Q Consensus 351 ~ld~~~l~~g~~~~g~~~~~i~~i~~~~~~~-~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g~v~lI~a 429 (591)
.+++..+..+..+.+.+...+..++..+... .+.+|||||+|.+.+.+.. .....++.+.|+..++++.+.+|++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~----~~~~~~~~~~l~~~~~~~~~~ii~~ 158 (187)
T 2p65_A 83 SLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAV----AEGALDAGNILKPMLARGELRCIGA 158 (187)
T ss_dssp EECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSS----CTTSCCTHHHHHHHHHTTCSCEEEE
T ss_pred EEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccc----cccchHHHHHHHHHHhcCCeeEEEe
Confidence 9998888776667778888888888887765 5679999999999654331 1223567788888888899999999
Q ss_pred CChhHHHhhhcccHHHHccCcceeecCCC
Q 007723 430 TTQDEHRTQFEKDKALARRFQPVLISEPS 458 (591)
Q Consensus 430 tt~~e~~~~~~~d~aL~~Rf~~i~i~~p~ 458 (591)
++..++.....++++|.+||..+.+..|+
T Consensus 159 ~~~~~~~~~~~~~~~l~~R~~~i~i~~p~ 187 (187)
T 2p65_A 159 TTVSEYRQFIEKDKALERRFQQILVEQPS 187 (187)
T ss_dssp ECHHHHHHHTTTCHHHHHHEEEEECCSCC
T ss_pred cCHHHHHHHHhccHHHHHhcCcccCCCCC
Confidence 99988776677899999999999998885
No 11
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.88 E-value=2.1e-22 Score=217.70 Aligned_cols=248 Identities=21% Similarity=0.236 Sum_probs=177.1
Q ss_pred hhcccccccCCCCccCCcHHHH---HHHHHHHHhcCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeeh
Q 007723 278 VDLTARASEELIDPVIGRETEI---QRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (591)
Q Consensus 278 ~~l~~~~r~~~~~~vvG~~~~i---~~l~~~L~~~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~ 354 (591)
.+|.+++||.+|++++|+++.+ ..+...+.....++++|+||||||||++|+.|++.+ +..++.++.
T Consensus 14 ~pla~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~----------~~~f~~l~a 83 (447)
T 3pvs_A 14 QPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA----------NADVERISA 83 (447)
T ss_dssp CCHHHHTCCCSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT----------TCEEEEEET
T ss_pred CChHHHhCCCCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh----------CCCeEEEEe
Confidence 6899999999999999999999 788888888888899999999999999999999987 566777664
Q ss_pred hhhhccccccchHHHHHHHHHHHHH----hcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCCcEEEEecC
Q 007723 355 GLLMAGAKERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIAST 430 (591)
Q Consensus 355 ~~l~~g~~~~g~~~~~i~~i~~~~~----~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g~v~lI~at 430 (591)
.. .+ ..+ ++.++..+. ...+.||||||||.+ ....++.|++.++.+.+++|++|
T Consensus 84 ~~--~~---~~~----ir~~~~~a~~~~~~~~~~iLfIDEI~~l-------------~~~~q~~LL~~le~~~v~lI~at 141 (447)
T 3pvs_A 84 VT--SG---VKE----IREAIERARQNRNAGRRTILFVDEVHRF-------------NKSQQDAFLPHIEDGTITFIGAT 141 (447)
T ss_dssp TT--CC---HHH----HHHHHHHHHHHHHTTCCEEEEEETTTCC-------------------CCHHHHHTTSCEEEEEE
T ss_pred cc--CC---HHH----HHHHHHHHHHhhhcCCCcEEEEeChhhh-------------CHHHHHHHHHHHhcCceEEEecC
Confidence 32 11 122 333444332 356899999999999 44567889999999999999999
Q ss_pred ChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHhh---cCCCCcHHHHHHHHHHhHHhhhcCCCcHHHH
Q 007723 431 TQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAH---HNCKFTLEAINAAVHLSARYISDRYLPDKAI 507 (591)
Q Consensus 431 t~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~---~~i~i~~~al~~l~~~s~r~i~~~~lp~~ai 507 (591)
|.+. .+.++++|.+||.++.+.+|+.+++..++...+..+... .++.+++++++.++.++.+.+ +.++
T Consensus 142 t~n~---~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~------R~ll 212 (447)
T 3pvs_A 142 TENP---SFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDA------RRAL 212 (447)
T ss_dssp SSCG---GGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCH------HHHH
T ss_pred CCCc---ccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCH------HHHH
Confidence 8775 457889999999999999999999999998887754322 457899999999999976654 4588
Q ss_pred HHHHHHhhHhhhh--hh-ccchhhhhhhhcCCh-------HH---HHHHHHHHhhcchHHHHhhchhhHhhh
Q 007723 508 DLVDEAGSRAHIE--LF-KRKKEQQTCILSKPP-------DD---YWQEIRTVQAMHEVVQGSRLKYDDVVA 566 (591)
Q Consensus 508 ~lld~a~a~~~~~--~~-~~~~~~~i~~l~~~~-------~~---~~~~~~~~~~~~d~~~a~~~~~~~~~~ 566 (591)
++|+.++..+... +. ....+.....+.+.. +. ......+.+...|.+.|..+..++-+.
T Consensus 213 n~Le~a~~~a~~~~~~~~~It~e~v~~~l~~~~~~~dk~gd~~yd~isal~ksirgsd~daAl~~la~ml~~ 284 (447)
T 3pvs_A 213 NTLEMMADMAEVDDSGKRVLKPELLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITA 284 (447)
T ss_dssp HHHHHHHHHSCBCTTSCEECCHHHHHHHHTCCCCC---CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcccccCCCCccCHHHHHHHHhhhhhccCCccchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 9999888654322 11 111111112222221 11 223333455667777777666655543
No 12
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.88 E-value=5.1e-22 Score=209.13 Aligned_cols=201 Identities=22% Similarity=0.266 Sum_probs=153.9
Q ss_pred ccCCCCccCCcHHHHHHHHHHHHh-------------cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEE
Q 007723 285 SEELIDPVIGRETEIQRIIQILCR-------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMS 351 (591)
Q Consensus 285 r~~~~~~vvG~~~~i~~l~~~L~~-------------~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ 351 (591)
..-+|++|.|.++.++.|.+.+.- +.+.++|||||||||||++|+++|..+ +..++.
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~----------~~~f~~ 212 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT----------DCKFIR 212 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHH----------TCEEEE
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhh----------CCCceE
Confidence 346899999999999888775421 245789999999999999999999998 789999
Q ss_pred eehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHH---HHHhhccccc----CCcE
Q 007723 352 LDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLD---ISNLLKPSLG----RGEL 424 (591)
Q Consensus 352 ld~~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~---~~n~L~~~le----~g~v 424 (591)
++.+.+. .++.|+.+..++.+|..++...++||||||+|.+.+.+..+.+ ++... ..+.|+..|+ ...+
T Consensus 213 v~~s~l~--sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~--~~~~~~~~~l~~lL~~lDg~~~~~~V 288 (405)
T 4b4t_J 213 VSGAELV--QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSG--GGDSEVQRTMLELLNQLDGFETSKNI 288 (405)
T ss_dssp EEGGGGS--CSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSS--GGGGHHHHHHHHHHHHHHTTTCCCCE
T ss_pred EEhHHhh--ccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCC--CCcHHHHHHHHHHHHhhhccCCCCCe
Confidence 9999887 4588999999999999999999999999999999876543222 22222 3344444443 5678
Q ss_pred EEEecCChhHHHhhhcccHHHHc--cCc-ceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHH-HHHHHHHHhHHhhhcC
Q 007723 425 QCIASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLE-AINAAVHLSARYISDR 500 (591)
Q Consensus 425 ~lI~att~~e~~~~~~~d~aL~~--Rf~-~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~-al~~l~~~s~r~i~~~ 500 (591)
++|+|||..+ .+|++|.| ||+ .|+|+.|+.+++.+||+.+..+. .++++ .++.+++.+.+|-
T Consensus 289 ~vIaATNrpd-----~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~------~l~~dvdl~~lA~~t~G~S--- 354 (405)
T 4b4t_J 289 KIIMATNRLD-----ILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKM------NLTRGINLRKVAEKMNGCS--- 354 (405)
T ss_dssp EEEEEESCSS-----SSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTS------BCCSSCCHHHHHHHCCSCC---
T ss_pred EEEeccCChh-----hCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCC------CCCccCCHHHHHHHCCCCC---
Confidence 9999999863 68999999 998 59999999999999997665532 33322 2677888776653
Q ss_pred CCcHHHHHHHHHHhh
Q 007723 501 YLPDKAIDLVDEAGS 515 (591)
Q Consensus 501 ~lp~~ai~lld~a~a 515 (591)
....-.++.+|+.
T Consensus 355 --GADi~~l~~eA~~ 367 (405)
T 4b4t_J 355 --GADVKGVCTEAGM 367 (405)
T ss_dssp --HHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHH
Confidence 2244556667664
No 13
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=99.87 E-value=8.7e-22 Score=179.93 Aligned_cols=135 Identities=16% Similarity=0.218 Sum_probs=121.5
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHhhcCCCcHHHHHHCCCCHHHHHHHHHHHhhcC-CCCCCchhhccCCCC
Q 007723 85 FTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRHPNGFLESGITIDKAREAVVSIWHST-NNQDTDDAAAQGKPF 163 (591)
Q Consensus 85 fT~~a~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~L~~~gi~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~ 163 (591)
||++++++|..|+.+|+++||.+|+|||||+|||.+++...+|+.+|+|++.++..++..+++. +.. .
T Consensus 2 ~t~~~~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~~~~~iL~~~g~~~~~l~~~l~~~l~~~~p~~-----------~ 70 (143)
T 1k6k_A 2 LNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVL-----------P 70 (143)
T ss_dssp BCHHHHHHHHHHHHHHHHHTBSEECHHHHHHHHTTCHHHHHHHHHTTCCHHHHHHHHHHHHHHHSCBC-----------C
T ss_pred CCHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHcCchHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-----------C
Confidence 8999999999999999999999999999999999877558899999999999999999999875 432 1
Q ss_pred -C-CCCCCCCCHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhhhcccchhhHHHHHhCCCHHHHHHHHH
Q 007723 164 -S-SAAKMPFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAV 230 (591)
Q Consensus 164 -~-~~~~~~~S~~~k~vL~~A~~~A~~~g~~~I~~ehLLlall~~~~~~a~~iL~~~gv~~~~l~~~i~ 230 (591)
+ ....++||+.++++|+.|..+|+.+|+.||+++|||+||++++++.+.++|+++||+.+.+++.+.
T Consensus 71 ~~~~~~~~~~s~~~~~~l~~A~~~A~~~~~~~i~~ehLLlall~~~~~~~~~iL~~~gi~~~~l~~~i~ 139 (143)
T 1k6k_A 71 ASEEERDTQPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFIS 139 (143)
T ss_dssp SSCSCCSCEECHHHHHHHHHHHHHHHSSSCSCBCHHHHHHHHTTCTTSHHHHHHHHTTCCHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhCcCcHHHHHHHHcCCCHHHHHHHHH
Confidence 1 124688999999999999999999999999999999999998888899999999999999887654
No 14
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.86 E-value=1.1e-21 Score=207.19 Aligned_cols=203 Identities=22% Similarity=0.253 Sum_probs=153.3
Q ss_pred ccCCCCccCCcHHHHHHHHHHHHh-------------cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEE
Q 007723 285 SEELIDPVIGRETEIQRIIQILCR-------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMS 351 (591)
Q Consensus 285 r~~~~~~vvG~~~~i~~l~~~L~~-------------~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ 351 (591)
..-+|++|.|.++.++.|.+.+.- +.+.++|||||||||||++|+++|..+ +..++.
T Consensus 177 p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~----------~~~fi~ 246 (437)
T 4b4t_I 177 PTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT----------SATFLR 246 (437)
T ss_dssp CCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH----------TCEEEE
T ss_pred CCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHh----------CCCEEE
Confidence 345899999999999888775432 235789999999999999999999998 788999
Q ss_pred eehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCC-ccHHHHHhhcccc----cCCcEEE
Q 007723 352 LDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKG-TGLDISNLLKPSL----GRGELQC 426 (591)
Q Consensus 352 ld~~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~-~~~~~~n~L~~~l----e~g~v~l 426 (591)
++.+.++ .++.|+.+..++.+|..+....++||||||+|.+...+..+..... ......+.|+..+ ..+.+++
T Consensus 247 v~~s~l~--sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViV 324 (437)
T 4b4t_I 247 IVGSELI--QKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKV 324 (437)
T ss_dssp EESGGGC--CSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEE
T ss_pred EEHHHhh--hccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEE
Confidence 9998887 4588999999999999999999999999999999877643322111 1122333344333 2467999
Q ss_pred EecCChhHHHhhhcccHHHHc--cCc-ceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHH-HHHHHHHHhHHhhhcCCC
Q 007723 427 IASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLE-AINAAVHLSARYISDRYL 502 (591)
Q Consensus 427 I~att~~e~~~~~~~d~aL~~--Rf~-~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~-al~~l~~~s~r~i~~~~l 502 (591)
|+|||..+ .+|++|.| ||+ .|+|+.|+.+++.+||+.+..+ +.++++ .++.++..+.+|-
T Consensus 325 IaATNrpd-----~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~------~~l~~dvdl~~LA~~T~GfS----- 388 (437)
T 4b4t_I 325 IMATNKIE-----TLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSK------MNLSEDVNLETLVTTKDDLS----- 388 (437)
T ss_dssp EEEESCST-----TCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTT------SCBCSCCCHHHHHHHCCSCC-----
T ss_pred EEeCCChh-----hcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcC------CCCCCcCCHHHHHHhCCCCC-----
Confidence 99999864 68999999 998 5999999999999999766553 333333 2677888776653
Q ss_pred cHHHHHHHHHHhh
Q 007723 503 PDKAIDLVDEAGS 515 (591)
Q Consensus 503 p~~ai~lld~a~a 515 (591)
....-.++.+|+.
T Consensus 389 GADI~~l~~eA~~ 401 (437)
T 4b4t_I 389 GADIQAMCTEAGL 401 (437)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 2244456666654
No 15
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.86 E-value=4.3e-21 Score=204.52 Aligned_cols=200 Identities=22% Similarity=0.222 Sum_probs=152.2
Q ss_pred CCCCccCCcHHHHHHHHHHHHh-------------cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEee
Q 007723 287 ELIDPVIGRETEIQRIIQILCR-------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (591)
Q Consensus 287 ~~~~~vvG~~~~i~~l~~~L~~-------------~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld 353 (591)
-+|++|.|.++.++.|.+.+.- +.+.++|||||||||||++|+++|.++ +..++.++
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~----------~~~fi~vs 275 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT----------DATFIRVI 275 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHH----------TCEEEEEE
T ss_pred CCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhcc----------CCCeEEEE
Confidence 5899999999999888775321 345789999999999999999999998 78899999
Q ss_pred hhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHH---HHHhhcccc----cCCcEEE
Q 007723 354 MGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLD---ISNLLKPSL----GRGELQC 426 (591)
Q Consensus 354 ~~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~---~~n~L~~~l----e~g~v~l 426 (591)
.+.++ .++.|+.+..++.+|..+....++||||||+|.+...+..+.+ +.... ..+.|+..| ..+.+++
T Consensus 276 ~s~L~--sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~--~~~~~~~~~l~~lL~~lDg~~~~~~ViV 351 (467)
T 4b4t_H 276 GSELV--QKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGA--GGDNEVQRTMLELITQLDGFDPRGNIKV 351 (467)
T ss_dssp GGGGC--CCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSC--GGGGHHHHHHHHHHHHHHSSCCTTTEEE
T ss_pred hHHhh--cccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCC--CccHHHHHHHHHHHHHhhccCCCCcEEE
Confidence 99887 4588999999999999999999999999999999876543221 11222 233333333 3567999
Q ss_pred EecCChhHHHhhhcccHHHHc--cCc-ceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHH-HHHHHHHHhHHhhhcCCC
Q 007723 427 IASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLE-AINAAVHLSARYISDRYL 502 (591)
Q Consensus 427 I~att~~e~~~~~~~d~aL~~--Rf~-~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~-al~~l~~~s~r~i~~~~l 502 (591)
|+|||.. ..+|++|.| ||+ .|+|+.|+.+++.+||+.+.... .++.+ .++.+++.+.+|-
T Consensus 352 IaATNrp-----d~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~------~l~~dvdl~~LA~~T~GfS----- 415 (467)
T 4b4t_H 352 MFATNRP-----NTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSM------SVERGIRWELISRLCPNST----- 415 (467)
T ss_dssp EEECSCT-----TSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTS------CBCSSCCHHHHHHHCCSCC-----
T ss_pred EeCCCCc-----ccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCC------CCCCCCCHHHHHHHCCCCC-----
Confidence 9999985 368999999 998 59999999999999997766533 22222 2677787776653
Q ss_pred cHHHHHHHHHHhhH
Q 007723 503 PDKAIDLVDEAGSR 516 (591)
Q Consensus 503 p~~ai~lld~a~a~ 516 (591)
....-.++.+|+..
T Consensus 416 GADI~~l~~eAa~~ 429 (467)
T 4b4t_H 416 GAELRSVCTEAGMF 429 (467)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 23445567777643
No 16
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=99.86 E-value=4.2e-21 Score=180.13 Aligned_cols=138 Identities=14% Similarity=0.100 Sum_probs=115.0
Q ss_pred ccchHHHhhHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHhhcCCCc--HHHHHHCCCCHHHHHHHHHHHhhcCCCCCCch
Q 007723 78 ISSVFERFTERAVKAVIFSQREAKSLGKDMVFTQHLLLGLIAEDRH--PNGFLESGITIDKAREAVVSIWHSTNNQDTDD 155 (591)
Q Consensus 78 ~~~~~~~fT~~a~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~--~~~L~~~gi~~~~l~~~~~~~~~~~~~~~~~~ 155 (591)
..+||++||++++++|+.|+++|+++||++|+|||||+|||.++++ ..+|+.+|||++.+++.+. .+++.+.
T Consensus 18 l~~~~~kfT~~a~~aL~~A~~~A~~~~h~~I~~EHLLlaLL~~~~~~a~~iL~~~gvd~~~l~~~l~-~l~~~p~----- 91 (171)
T 3zri_A 18 LPTLIAKLNAQSKLALEQAASLCIERQHPEVTLEHYLDVLLDNPLSDVRLVLKQAGLEVDQVKQAIA-STYSREQ----- 91 (171)
T ss_dssp HHHHHHHBCHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHTTCTTSHHHHHHHHTTCCHHHHHHHHH-HHSCCCC-----
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHH-HHhcCCC-----
Confidence 4589999999999999999999999999999999999999998877 7899999999999999999 8887643
Q ss_pred hhccCCCCCCCCCCCCCHHHHHHHHHHHHHHH-HcCCCcCCHHHHHHHhhhcccch-hhHHHHH-hCCCHHHHHHHH
Q 007723 156 AAAQGKPFSSAAKMPFSISTKRVFEAAVEYSR-SRGYNFIAPEHIALGLFTVDDGS-AGRVLKR-LGVDVNHLAAVA 229 (591)
Q Consensus 156 ~~~~~~~~~~~~~~~~S~~~k~vL~~A~~~A~-~~g~~~I~~ehLLlall~~~~~~-a~~iL~~-~gv~~~~l~~~i 229 (591)
+....++||+.++++|+.|..+|+ ++|++||+++|||+||++++... ...+-.. ..|+.+.|++.+
T Consensus 92 --------~~~~~~~~S~~l~~vL~~A~~~A~l~~gd~~I~teHLLLALl~~~~~~~~~~~~~~l~~i~~~~L~~~~ 160 (171)
T 3zri_A 92 --------VLDTYPAFSPLLVELLQEAWLLSSTELEQAELRSGAIFLAALTRADRYLSFKLISLFEGINRENLKKHF 160 (171)
T ss_dssp --------CCSSCCEECHHHHHHHHHHHHHHHTTTCCSSBCHHHHHHHHHHTHHHHSCHHHHHHTTTSCHHHHHHTH
T ss_pred --------CCCCCCCcCHHHHHHHHHHHHHHHHHcCCCEEcHHHHHHHHHhChhhhHHHHhhHHHHcCCHHHHHHHH
Confidence 223568899999999999999999 99999999999999999765210 1111111 336666666544
No 17
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.85 E-value=2.7e-20 Score=195.91 Aligned_cols=217 Identities=22% Similarity=0.317 Sum_probs=166.7
Q ss_pred chHHHhhchhcccccccCCCCccCCcHHHHHHHHHHHHh------------cCCCCCeEecCCCCcHHHHHHHHHHHHHh
Q 007723 270 ASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCR------------RTKNNPILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 270 ~~~l~~~~~~l~~~~r~~~~~~vvG~~~~i~~l~~~L~~------------~~~~~ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
...++.....+..++++..|++++|++..++.|.+.+.. ....+++|+||||||||++|+++|..+
T Consensus 64 ~~~~~~i~~~i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~-- 141 (357)
T 3d8b_A 64 PKMIELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS-- 141 (357)
T ss_dssp HHHHHHHHHHTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT--
T ss_pred hHHHHHHHhhcccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc--
Confidence 345666777788888999999999999999999887643 345689999999999999999999987
Q ss_pred CCCCccccCceEEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcc
Q 007723 338 AEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKP 417 (591)
Q Consensus 338 ~~~p~~~~~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~ 417 (591)
+..++.++++.+.. .+.|+.+..++.++..+....+.||||||+|.|......+. ......+++.|+.
T Consensus 142 --------~~~~~~i~~~~l~~--~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~--~~~~~~~~~~lL~ 209 (357)
T 3d8b_A 142 --------GATFFSISASSLTS--KWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGE--HESSRRIKTEFLV 209 (357)
T ss_dssp --------TCEEEEEEGGGGCC--SSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC--------CHHHHHHHHHHH
T ss_pred --------CCeEEEEehHHhhc--cccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCc--chHHHHHHHHHHH
Confidence 67888999887763 46778888899999888878889999999999976532211 1223345555555
Q ss_pred ccc------CCcEEEEecCChhHHHhhhcccHHHHccCc-ceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHH
Q 007723 418 SLG------RGELQCIASTTQDEHRTQFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAV 490 (591)
Q Consensus 418 ~le------~g~v~lI~att~~e~~~~~~~d~aL~~Rf~-~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~ 490 (591)
.++ ...+++|++|+... .+++++.+||. .+.+..|+.+++.+++..++.. .++.++++.++.++
T Consensus 210 ~l~~~~~~~~~~v~vI~atn~~~-----~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~----~~~~l~~~~l~~la 280 (357)
T 3d8b_A 210 QLDGATTSSEDRILVVGATNRPQ-----EIDEAARRRLVKRLYIPLPEASARKQIVINLMSK----EQCCLSEEEIEQIV 280 (357)
T ss_dssp HHHC----CCCCEEEEEEESCGG-----GBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHT----SCBCCCHHHHHHHH
T ss_pred HHhcccccCCCCEEEEEecCChh-----hCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhh----cCCCccHHHHHHHH
Confidence 543 35789999998753 57899999998 6899999999999999776654 37789999999999
Q ss_pred HHhHHhhhcCCCcHHHHHHHHHHh
Q 007723 491 HLSARYISDRYLPDKAIDLVDEAG 514 (591)
Q Consensus 491 ~~s~r~i~~~~lp~~ai~lld~a~ 514 (591)
+.+.+|.. .....+++.|.
T Consensus 281 ~~t~G~s~-----~dl~~l~~~a~ 299 (357)
T 3d8b_A 281 QQSDAFSG-----ADMTQLCREAS 299 (357)
T ss_dssp HHTTTCCH-----HHHHHHHHHHH
T ss_pred HHcCCCCH-----HHHHHHHHHHH
Confidence 99876643 23445555554
No 18
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.85 E-value=1.2e-20 Score=201.37 Aligned_cols=201 Identities=19% Similarity=0.229 Sum_probs=152.5
Q ss_pred ccCCCCccCCcHHHHHHHHHHHHh-------------cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEE
Q 007723 285 SEELIDPVIGRETEIQRIIQILCR-------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMS 351 (591)
Q Consensus 285 r~~~~~~vvG~~~~i~~l~~~L~~-------------~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ 351 (591)
...+|++|.|.++.++.|.+.+.. +.+.++|||||||||||++|+++|..+ +..++.
T Consensus 176 p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~----------~~~f~~ 245 (434)
T 4b4t_M 176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT----------NATFLK 245 (434)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH----------TCEEEE
T ss_pred CCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh----------CCCEEE
Confidence 345799999999999988775321 235789999999999999999999998 788999
Q ss_pred eehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHH---HHHhhccccc----CCcE
Q 007723 352 LDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLD---ISNLLKPSLG----RGEL 424 (591)
Q Consensus 352 ld~~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~---~~n~L~~~le----~g~v 424 (591)
++.+.+. .++.|+.+..++.+|..+....++||||||+|.+...+..+.. ++... ..+.|+..|. .+.+
T Consensus 246 v~~s~l~--~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~--~~~~~~~~~~~~lL~~ldg~~~~~~V 321 (434)
T 4b4t_M 246 LAAPQLV--QMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEK--SGDREVQRTMLELLNQLDGFSSDDRV 321 (434)
T ss_dssp EEGGGGC--SSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGG--GTTHHHHHHHHHHHHHHTTSCSSCSS
T ss_pred Eehhhhh--hcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCC--CCchHHHHHHHHHHHHhhccCCCCCE
Confidence 9999887 4588999999999999999989999999999999876543221 22222 2334444443 4578
Q ss_pred EEEecCChhHHHhhhcccHHHHc--cCc-ceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHH-HHHHHHHHhHHhhhcC
Q 007723 425 QCIASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLE-AINAAVHLSARYISDR 500 (591)
Q Consensus 425 ~lI~att~~e~~~~~~~d~aL~~--Rf~-~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~-al~~l~~~s~r~i~~~ 500 (591)
++|+|||.. ..+|++|.| ||+ .|.|+.|+.+++.+||+.+..++ .++++ .++.+++.+.+|-
T Consensus 322 iVIaaTNrp-----~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~------~~~~dvdl~~lA~~t~G~s--- 387 (434)
T 4b4t_M 322 KVLAATNRV-----DVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKM------TTDDDINWQELARSTDEFN--- 387 (434)
T ss_dssp EEEEECSSC-----CCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHS------CBCSCCCHHHHHHHCSSCC---
T ss_pred EEEEeCCCc-----hhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCC------CCCCcCCHHHHHHhCCCCC---
Confidence 999999985 468999988 998 59999999999999998777654 22222 2677777776653
Q ss_pred CCcHHHHHHHHHHhh
Q 007723 501 YLPDKAIDLVDEAGS 515 (591)
Q Consensus 501 ~lp~~ai~lld~a~a 515 (591)
....-.++.+|+.
T Consensus 388 --GADi~~l~~eA~~ 400 (434)
T 4b4t_M 388 --GAQLKAVTVEAGM 400 (434)
T ss_dssp --HHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHH
Confidence 2234456666653
No 19
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.85 E-value=3.7e-20 Score=197.56 Aligned_cols=202 Identities=18% Similarity=0.199 Sum_probs=152.8
Q ss_pred cCCCCccCCcHHHHHHHHHHHHh-------------cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEe
Q 007723 286 EELIDPVIGRETEIQRIIQILCR-------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSL 352 (591)
Q Consensus 286 ~~~~~~vvG~~~~i~~l~~~L~~-------------~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~l 352 (591)
.-+|+++.|.++.++.|.+.+.. ..+.++|||||||||||++|+++|..+ +..++.+
T Consensus 168 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~----------~~~~~~v 237 (428)
T 4b4t_K 168 DVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST----------KAAFIRV 237 (428)
T ss_dssp SCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHH----------TCEEEEE
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCeEEE
Confidence 35799999999999888876532 234679999999999999999999998 7899999
Q ss_pred ehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCC-ccHHHHHhhcccc----cCCcEEEE
Q 007723 353 DMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKG-TGLDISNLLKPSL----GRGELQCI 427 (591)
Q Consensus 353 d~~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~-~~~~~~n~L~~~l----e~g~v~lI 427 (591)
+.+.+. .++.|+.+..++.+|..+....++||||||+|.+...+..+..... ....+.+.|+..| ....+++|
T Consensus 238 ~~~~l~--~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI 315 (428)
T 4b4t_K 238 NGSEFV--HKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVI 315 (428)
T ss_dssp EGGGTC--CSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEE
T ss_pred ecchhh--ccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEE
Confidence 999887 4578999999999999999999999999999999877543222111 1223344444444 35678999
Q ss_pred ecCChhHHHhhhcccHHHHc--cCc-ceeec-CCCHHHHHHHHHHHHHHHHhhcCCCCcHH-HHHHHHHHhHHhhhcCCC
Q 007723 428 ASTTQDEHRTQFEKDKALAR--RFQ-PVLIS-EPSQEDAVRILLGLREKYEAHHNCKFTLE-AINAAVHLSARYISDRYL 502 (591)
Q Consensus 428 ~att~~e~~~~~~~d~aL~~--Rf~-~i~i~-~p~~~e~~~iL~~~~~~~~~~~~i~i~~~-al~~l~~~s~r~i~~~~l 502 (591)
+|||.. ..+|++|.| ||+ .|.|+ .|+.+++..|++.+..+ +.+.++ .++.++..+.+|-.
T Consensus 316 ~aTN~~-----~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~------~~l~~~~dl~~lA~~t~G~sg---- 380 (428)
T 4b4t_K 316 MATNRA-----DTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASK------MSLAPEADLDSLIIRNDSLSG---- 380 (428)
T ss_dssp EEESCS-----SSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHS------SCBCTTCCHHHHHHHTTTCCH----
T ss_pred EecCCh-----hhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcC------CCCCcccCHHHHHHHCCCCCH----
Confidence 999985 368999999 998 58885 79999999999877653 333333 27788888776632
Q ss_pred cHHHHHHHHHHhh
Q 007723 503 PDKAIDLVDEAGS 515 (591)
Q Consensus 503 p~~ai~lld~a~a 515 (591)
...-.++.+|+.
T Consensus 381 -adi~~l~~eA~~ 392 (428)
T 4b4t_K 381 -AVIAAIMQEAGL 392 (428)
T ss_dssp -HHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHH
Confidence 344556666664
No 20
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.85 E-value=2.7e-20 Score=193.13 Aligned_cols=208 Identities=20% Similarity=0.268 Sum_probs=159.2
Q ss_pred cccccccCCCCccCCcHHHHHHHHHHHHh------------cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCc
Q 007723 280 LTARASEELIDPVIGRETEIQRIIQILCR------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSK 347 (591)
Q Consensus 280 l~~~~r~~~~~~vvG~~~~i~~l~~~L~~------------~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~ 347 (591)
+..+..+-+|++++|+++.++.|.+.+.. ....++||+||||||||++|+++|+.+ +.
T Consensus 8 ~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~----------~~ 77 (322)
T 3eie_A 8 ILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA----------NS 77 (322)
T ss_dssp SEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH----------TC
T ss_pred eeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH----------CC
Confidence 34556667899999999999999887621 123579999999999999999999987 67
Q ss_pred eEEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccc-----cCC
Q 007723 348 RIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL-----GRG 422 (591)
Q Consensus 348 ~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~l-----e~g 422 (591)
.++.++.+.+.. .+.|+.+..++.+|..+....++||||||+|.|......+. ......+.+.|+..+ ...
T Consensus 78 ~~~~v~~~~l~~--~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~--~~~~~~~~~~ll~~l~~~~~~~~ 153 (322)
T 3eie_A 78 TFFSVSSSDLVS--KWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGE--SEASRRIKTELLVQMNGVGNDSQ 153 (322)
T ss_dssp EEEEEEHHHHHT--TTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC--------CCTHHHHHHHHHHHGGGGTSCC
T ss_pred CEEEEchHHHhh--cccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCc--chHHHHHHHHHHHHhccccccCC
Confidence 889999888763 46788999999999999888889999999999976543211 122344555555444 246
Q ss_pred cEEEEecCChhHHHhhhcccHHHHccCc-ceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhhhcCC
Q 007723 423 ELQCIASTTQDEHRTQFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRY 501 (591)
Q Consensus 423 ~v~lI~att~~e~~~~~~~d~aL~~Rf~-~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i~~~~ 501 (591)
.+++|++||... .+|++|.+||. .+.++.|+.+++.+|++.++. ..+..+++..++.++..+.+|..
T Consensus 154 ~v~vi~atn~~~-----~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~----~~~~~~~~~~l~~la~~t~g~sg--- 221 (322)
T 3eie_A 154 GVLVLGATNIPW-----QLDSAIRRRFERRIYIPLPDLAARTTMFEINVG----DTPCVLTKEDYRTLGAMTEGYSG--- 221 (322)
T ss_dssp CEEEEEEESCGG-----GSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHT----TCCCCCCHHHHHHHHHTTTTCCH---
T ss_pred ceEEEEecCChh-----hCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhc----cCCCCCCHHHHHHHHHHcCCCCH---
Confidence 789999998753 58899999997 589999999999999977654 34677899999999998877633
Q ss_pred CcHHHHHHHHHHhh
Q 007723 502 LPDKAIDLVDEAGS 515 (591)
Q Consensus 502 lp~~ai~lld~a~a 515 (591)
...-.++.+|..
T Consensus 222 --~di~~l~~~a~~ 233 (322)
T 3eie_A 222 --SDIAVVVKDALM 233 (322)
T ss_dssp --HHHHHHHHHHTT
T ss_pred --HHHHHHHHHHHH
Confidence 344556666654
No 21
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.84 E-value=7.6e-19 Score=202.52 Aligned_cols=179 Identities=17% Similarity=0.262 Sum_probs=130.0
Q ss_pred CccCCcHHHHHHHHHHHHhcC-------C--CCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhcc
Q 007723 290 DPVIGRETEIQRIIQILCRRT-------K--NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAG 360 (591)
Q Consensus 290 ~~vvG~~~~i~~l~~~L~~~~-------~--~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g 360 (591)
+.++|++..++.+...+.+.. + ++++|+||||||||++|+++|+.+... +..++.+|++.+...
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~-------~~~~i~i~~s~~~~~ 563 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGD-------EESMIRIDMSEYMEK 563 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSC-------TTCEEEEEGGGGCSS
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC-------CcceEEEechhcccc
Confidence 468999999999988877532 1 158999999999999999999998432 567889999887643
Q ss_pred ccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCC-------------cEEEE
Q 007723 361 AKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-------------ELQCI 427 (591)
Q Consensus 361 ~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g-------------~v~lI 427 (591)
.... ...+...+...++.|||||||+.+ ..++++.|+..|+.+ ++++|
T Consensus 564 ~~~~------~~~l~~~~~~~~~~vl~lDEi~~~-------------~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI 624 (758)
T 3pxi_A 564 HSTS------GGQLTEKVRRKPYSVVLLDAIEKA-------------HPDVFNILLQVLEDGRLTDSKGRTVDFRNTILI 624 (758)
T ss_dssp CCCC---------CHHHHHHCSSSEEEEECGGGS-------------CHHHHHHHHHHHHHSBCC-----CCBCTTCEEE
T ss_pred cccc------cchhhHHHHhCCCeEEEEeCcccc-------------CHHHHHHHHHHhccCeEEcCCCCEeccCCeEEE
Confidence 2221 111223344567789999999998 678899999888754 35888
Q ss_pred ecCChh-----HHHh--hhcccHHHHccCc-ceeecCCCHHHHHHHHHHHHHHHHhh-----cCCCCcHHHHHHHHHHhH
Q 007723 428 ASTTQD-----EHRT--QFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAH-----HNCKFTLEAINAAVHLSA 494 (591)
Q Consensus 428 ~att~~-----e~~~--~~~~d~aL~~Rf~-~i~i~~p~~~e~~~iL~~~~~~~~~~-----~~i~i~~~al~~l~~~s~ 494 (591)
++||.. .+.. .-.+.++|.+||. .|.+++|+.+++..|+...+..+... ..+.+++++++++++.+.
T Consensus 625 ~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~ 704 (758)
T 3pxi_A 625 MTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGV 704 (758)
T ss_dssp EEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGC
T ss_pred EeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCC
Confidence 888841 1110 0125699999995 79999999999999998877665432 246789999999987643
No 22
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.84 E-value=2e-20 Score=193.82 Aligned_cols=238 Identities=14% Similarity=0.135 Sum_probs=169.6
Q ss_pred hchhcccccccCCCCccCCcHHHHHHHHHHHHhcCCCCC-eEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeeh
Q 007723 276 FCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNP-ILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (591)
Q Consensus 276 ~~~~l~~~~r~~~~~~vvG~~~~i~~l~~~L~~~~~~~i-lL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~ 354 (591)
-..+|+++|||.+|++++|+++.++.+...+.....+++ +++||||||||++++++++.+ +..+++++.
T Consensus 12 ~~~~~~~k~rP~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l----------~~~~~~i~~ 81 (324)
T 3u61_B 12 KEHILEQKYRPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV----------NADMMFVNG 81 (324)
T ss_dssp TCSSHHHHSCCCSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT----------TEEEEEEET
T ss_pred ccchHHHhhCCCCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh----------CCCEEEEcc
Confidence 346899999999999999999999999999987776666 556779999999999999987 567888875
Q ss_pred hhhhccccccchHHHHHHHHHHHHHhc-----CCeEEEEcCcchhhcCCCCCCCCCCcc-HHHHHhhcccccC--CcEEE
Q 007723 355 GLLMAGAKERGELEARVTTLISEIQKS-----GDVILFIDEVHTLIGSGTVGRGNKGTG-LDISNLLKPSLGR--GELQC 426 (591)
Q Consensus 355 ~~l~~g~~~~g~~~~~i~~i~~~~~~~-----~~~ILfIDEi~~L~~~~~~~~~~~~~~-~~~~n~L~~~le~--g~v~l 426 (591)
+.. + ...++..+...... .+.||||||+|.+ . .+.++.|+..++. ..+++
T Consensus 82 ~~~-------~--~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l-------------~~~~~~~~L~~~le~~~~~~~i 139 (324)
T 3u61_B 82 SDC-------K--IDFVRGPLTNFASAASFDGRQKVIVIDEFDRS-------------GLAESQRHLRSFMEAYSSNCSI 139 (324)
T ss_dssp TTC-------C--HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCG-------------GGHHHHHHHHHHHHHHGGGCEE
T ss_pred ccc-------C--HHHHHHHHHHHHhhcccCCCCeEEEEECCccc-------------CcHHHHHHHHHHHHhCCCCcEE
Confidence 431 1 22344444444332 5789999999999 4 5678888888874 56788
Q ss_pred EecCChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHH---HhhcCCCCcH-HHHHHHHHHhHHhhhcCCC
Q 007723 427 IASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKY---EAHHNCKFTL-EAINAAVHLSARYISDRYL 502 (591)
Q Consensus 427 I~att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~---~~~~~i~i~~-~al~~l~~~s~r~i~~~~l 502 (591)
|++|+... .++++|.+||..+.+.+|+.+++.+++..+...+ ....++.+++ ++++.+++.+.+.++.
T Consensus 140 I~~~n~~~-----~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~--- 211 (324)
T 3u61_B 140 IITANNID-----GIIKPLQSRCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRK--- 211 (324)
T ss_dssp EEEESSGG-----GSCTTHHHHSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTH---
T ss_pred EEEeCCcc-----ccCHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHHH---
Confidence 88888753 5779999999999999999999877766654433 2456899998 9999999998776554
Q ss_pred cHHHHHHHHHHhhHhhhhhhccchhhhhhhhcCChHHHHHHHHHHhhcchHHHHhhchhhH
Q 007723 503 PDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKYDD 563 (591)
Q Consensus 503 p~~ai~lld~a~a~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~d~~~a~~~~~~~ 563 (591)
+++.|+.++.. ... ..+.+..+... ...+.....++..+|++.|..+..+.
T Consensus 212 ---a~~~L~~~~~~-----~~i-~~~~v~~~~~~-~~~i~~~~~~~~~~~~~~a~~~~~~l 262 (324)
T 3u61_B 212 ---TIGELDSYSSK-----GVL-DAGILSLVTND-RGAIDDVLESLKNKDVKQLRALAPKY 262 (324)
T ss_dssp ---HHHHHHHHGGG-----TCB-CC-------------CHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ---HHHHHHHHhcc-----CCC-CHHHHHHHhCC-HHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 89999888721 111 11122222222 12344455667777777776665443
No 23
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.84 E-value=3.2e-20 Score=197.63 Aligned_cols=211 Identities=21% Similarity=0.320 Sum_probs=155.3
Q ss_pred hchhcccccccCCCCccCCcHHHHHHHHHHHHh------------cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCcc
Q 007723 276 FCVDLTARASEELIDPVIGRETEIQRIIQILCR------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVF 343 (591)
Q Consensus 276 ~~~~l~~~~r~~~~~~vvG~~~~i~~l~~~L~~------------~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~ 343 (591)
....|..++++..|++++|++..++.|.+.+.. ...+++||+||||||||++|++++..+
T Consensus 101 ~~~~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~-------- 172 (389)
T 3vfd_A 101 IMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES-------- 172 (389)
T ss_dssp GGGTTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT--------
T ss_pred HHhhhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh--------
Confidence 345678888999999999999999999887632 234789999999999999999999886
Q ss_pred ccCceEEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhccccc---
Q 007723 344 LLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG--- 420 (591)
Q Consensus 344 ~~~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le--- 420 (591)
+..++.+++..+.. .+.|+.+..++.++..+....++||||||||.|......+.. .....+++.|+..++
T Consensus 173 --~~~~~~v~~~~l~~--~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~--~~~~~~~~~ll~~l~~~~ 246 (389)
T 3vfd_A 173 --NATFFNISAASLTS--KYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEH--DASRRLKTEFLIEFDGVQ 246 (389)
T ss_dssp --TCEEEEECSCCC---------CHHHHHHHHHHHHHSSSEEEEEETGGGGC----------CTHHHHHHHHHHHHHHHC
T ss_pred --cCcEEEeeHHHhhc--cccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccc--hHHHHHHHHHHHHhhccc
Confidence 67888888877663 356777788899999888888899999999999765432111 224455565655553
Q ss_pred ---CCcEEEEecCChhHHHhhhcccHHHHccCc-ceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHh
Q 007723 421 ---RGELQCIASTTQDEHRTQFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (591)
Q Consensus 421 ---~g~v~lI~att~~e~~~~~~~d~aL~~Rf~-~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~ 496 (591)
...+++|++||... .+++++.+||. .+.+..|+.+++..||+.++.. ++..++++.+..++..+.+|
T Consensus 247 ~~~~~~v~vI~atn~~~-----~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~----~~~~l~~~~~~~la~~~~g~ 317 (389)
T 3vfd_A 247 SAGDDRVLVMGATNRPQ-----ELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCK----QGSPLTQKELAQLARMTDGY 317 (389)
T ss_dssp -----CEEEEEEESCGG-----GCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTT----SCCCSCHHHHHHHHHHTTTC
T ss_pred ccCCCCEEEEEecCCch-----hcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHcCCC
Confidence 35689999998753 67899999997 6999999999999999766553 47889999999999998776
Q ss_pred hhcCCCcHHHHHHHHHHh
Q 007723 497 ISDRYLPDKAIDLVDEAG 514 (591)
Q Consensus 497 i~~~~lp~~ai~lld~a~ 514 (591)
... ....+++.|+
T Consensus 318 ~~~-----~l~~L~~~a~ 330 (389)
T 3vfd_A 318 SGS-----DLTALAKDAA 330 (389)
T ss_dssp CHH-----HHHHHHHHHT
T ss_pred CHH-----HHHHHHHHHH
Confidence 432 2334555554
No 24
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.84 E-value=4.2e-20 Score=194.26 Aligned_cols=214 Identities=19% Similarity=0.243 Sum_probs=152.6
Q ss_pred hhchhcccccccCCCCccCCcHHHHHHHHHHHHh------------cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCc
Q 007723 275 QFCVDLTARASEELIDPVIGRETEIQRIIQILCR------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPV 342 (591)
Q Consensus 275 ~~~~~l~~~~r~~~~~~vvG~~~~i~~l~~~L~~------------~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~ 342 (591)
.+...+..+..+..|++++|++..++.|.+.+.. ...+++||+||||||||++|+++|+.+
T Consensus 36 ~~~~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~------- 108 (355)
T 2qp9_X 36 ALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA------- 108 (355)
T ss_dssp -----------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH-------
T ss_pred HHhhhhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh-------
Confidence 3444556677788999999999999998887632 224679999999999999999999988
Q ss_pred cccCceEEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhccccc--
Q 007723 343 FLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG-- 420 (591)
Q Consensus 343 ~~~~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le-- 420 (591)
+..++.++...+.. .+.|+.+..++.+|..+....++||||||+|.|...+..+. ......+.+.|+..+.
T Consensus 109 ---~~~~~~v~~~~l~~--~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~--~~~~~~~~~~ll~~l~~~ 181 (355)
T 2qp9_X 109 ---NSTFFSVSSSDLVS--KWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGE--SEASRRIKTELLVQMNGV 181 (355)
T ss_dssp ---TCEEEEEEHHHHHS--CC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC--------CTHHHHHHHHHHHHHHHC
T ss_pred ---CCCEEEeeHHHHhh--hhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCc--chHHHHHHHHHHHHhhcc
Confidence 67888999888764 35677788899999988878889999999999975532211 1223445566655553
Q ss_pred ---CCcEEEEecCChhHHHhhhcccHHHHccCc-ceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHh
Q 007723 421 ---RGELQCIASTTQDEHRTQFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (591)
Q Consensus 421 ---~g~v~lI~att~~e~~~~~~~d~aL~~Rf~-~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~ 496 (591)
...+++|++||... .+++++.+||. .+.++.|+.+++.+||+.++.. .+..+++..++.+++.+.+|
T Consensus 182 ~~~~~~v~vI~atn~~~-----~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~----~~~~~~~~~l~~la~~t~G~ 252 (355)
T 2qp9_X 182 GNDSQGVLVLGATNIPW-----QLDSAIRRRFERRIYIPLPDLAARTTMFEINVGD----TPSVLTKEDYRTLGAMTEGY 252 (355)
T ss_dssp C---CCEEEEEEESCGG-----GSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTT----SCBCCCHHHHHHHHHHTTTC
T ss_pred cccCCCeEEEeecCCcc-----cCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhh----CCCCCCHHHHHHHHHHcCCC
Confidence 45789999998853 57899999996 6899999999999999766543 35667899999999998776
Q ss_pred hhcCCCcHHHHHHHHHHhhH
Q 007723 497 ISDRYLPDKAIDLVDEAGSR 516 (591)
Q Consensus 497 i~~~~lp~~ai~lld~a~a~ 516 (591)
. +...-.++++|+..
T Consensus 253 s-----g~dl~~l~~~A~~~ 267 (355)
T 2qp9_X 253 S-----GSDIAVVVKDALMQ 267 (355)
T ss_dssp C-----HHHHHHHHHHHHHH
T ss_pred C-----HHHHHHHHHHHHHH
Confidence 3 33455666666543
No 25
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.83 E-value=7.8e-20 Score=195.37 Aligned_cols=202 Identities=23% Similarity=0.266 Sum_probs=152.0
Q ss_pred cCCCCccCCcHHHHHHHHHHHHh-------------cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEe
Q 007723 286 EELIDPVIGRETEIQRIIQILCR-------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSL 352 (591)
Q Consensus 286 ~~~~~~vvG~~~~i~~l~~~L~~-------------~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~l 352 (591)
.-+|++|.|.++.++.|.+.+.- +.+.++|||||||||||++|+++|..+ +..++.+
T Consensus 177 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~----------~~~~~~v 246 (437)
T 4b4t_L 177 EITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI----------GANFIFS 246 (437)
T ss_dssp SSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH----------TCEEEEE
T ss_pred CCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh----------CCCEEEE
Confidence 35799999999998888775432 235789999999999999999999998 7889999
Q ss_pred ehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCC-ccHHHHHhhccccc----CCcEEEE
Q 007723 353 DMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKG-TGLDISNLLKPSLG----RGELQCI 427 (591)
Q Consensus 353 d~~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~-~~~~~~n~L~~~le----~g~v~lI 427 (591)
+.+.++ .++.|+.+..++.+|..+....++||||||+|.+...+..+..+.. ......+.|+..|. .+.+++|
T Consensus 247 ~~s~l~--sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI 324 (437)
T 4b4t_L 247 PASGIV--DKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKII 324 (437)
T ss_dssp EGGGTC--CSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEE
T ss_pred ehhhhc--cccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEE
Confidence 999887 4588999999999999999999999999999999876543222111 11223344554443 4678999
Q ss_pred ecCChhHHHhhhcccHHHHc--cCc-ceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHH-HHHHHHHHhHHhhhcCCCc
Q 007723 428 ASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLE-AINAAVHLSARYISDRYLP 503 (591)
Q Consensus 428 ~att~~e~~~~~~~d~aL~~--Rf~-~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~-al~~l~~~s~r~i~~~~lp 503 (591)
+|||..+ .+|++|.| ||+ .|+|+.|+.+++.+||+.+..+. .++++ .++.+++.+.+|- .
T Consensus 325 ~ATNrp~-----~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~------~~~~d~dl~~lA~~t~G~s-----G 388 (437)
T 4b4t_L 325 MATNRPD-----TLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKV------KKTGEFDFEAAVKMSDGFN-----G 388 (437)
T ss_dssp EEESSTT-----SSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTS------CBCSCCCHHHHHHTCCSCC-----H
T ss_pred EecCCch-----hhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCC------CCCcccCHHHHHHhCCCCC-----H
Confidence 9999853 68999998 587 59999999999999998776643 22221 2677777776653 2
Q ss_pred HHHHHHHHHHhh
Q 007723 504 DKAIDLVDEAGS 515 (591)
Q Consensus 504 ~~ai~lld~a~a 515 (591)
...-.++.+|+.
T Consensus 389 ADi~~l~~eA~~ 400 (437)
T 4b4t_L 389 ADIRNCATEAGF 400 (437)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344556666664
No 26
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.83 E-value=1.4e-19 Score=186.08 Aligned_cols=246 Identities=17% Similarity=0.190 Sum_probs=174.5
Q ss_pred hhcccccccCCCCccCCcHHHHHHHHHHHHhcCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhh
Q 007723 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLL 357 (591)
Q Consensus 278 ~~l~~~~r~~~~~~vvG~~~~i~~l~~~L~~~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l 357 (591)
.+|.++++|..|++++|+++.++.+...+.....++++|+||||||||++|+.+++.+.+.. ....++.++.+..
T Consensus 5 ~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~-----~~~~~~~~~~~~~ 79 (319)
T 2chq_A 5 EIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGEN-----WRDNFIEMNASDE 79 (319)
T ss_dssp -CTTTTTSCSSGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTC-----HHHHCEEEETTST
T ss_pred ccHHHhcCCCCHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCc-----ccCCeEEEeCccc
Confidence 47899999999999999999999999988887777899999999999999999999885321 1234566665442
Q ss_pred hccccccchHHHHHHHHHHHH--HhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccC--CcEEEEecCChh
Q 007723 358 MAGAKERGELEARVTTLISEI--QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQCIASTTQD 433 (591)
Q Consensus 358 ~~g~~~~g~~~~~i~~i~~~~--~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~--g~v~lI~att~~ 433 (591)
. + .......+..+.... ....+.||||||+|.+ ..+.++.|+..++. ..+++|++++..
T Consensus 80 ~-~---~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l-------------~~~~~~~L~~~le~~~~~~~~i~~~~~~ 142 (319)
T 2chq_A 80 R-G---IDVVRHKIKEFARTAPIGGAPFKIIFLDEADAL-------------TADAQAALRRTMEMYSKSCRFILSCNYV 142 (319)
T ss_dssp T-C---TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGS-------------CHHHHHTTGGGTSSSSSSEEEEEEESCG
T ss_pred c-C---hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcC-------------CHHHHHHHHHHHHhcCCCCeEEEEeCCh
Confidence 2 1 111112222221100 0145789999999999 56678899999985 567888887764
Q ss_pred HHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhhhcCCCcHHHHHHHHHH
Q 007723 434 EHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEA 513 (591)
Q Consensus 434 e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i~~~~lp~~ai~lld~a 513 (591)
. .+.+++.+||..+.+.+|+.+++..+|..++.+ .++.+++++++.+++.+.+.+ ..++.+++.+
T Consensus 143 ~-----~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~----~~~~i~~~~l~~l~~~~~G~~------r~~~~~l~~~ 207 (319)
T 2chq_A 143 S-----RIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEK----EGVKITEDGLEALIYISGGDF------RKAINALQGA 207 (319)
T ss_dssp G-----GSCHHHHTTCEEEECCCCCHHHHHHHHHHHHHT----TCCCBCHHHHHHHHHTTTTCH------HHHHHHHHHH
T ss_pred h-----hcchHHHhhCeEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH------HHHHHHHHHH
Confidence 2 567999999999999999999999998776654 488999999999998876654 4578888776
Q ss_pred hhHhhhhhhccchhhhhhhhcCC-hHHHHHHHHHHhhcchHHHHhhchhhHhh
Q 007723 514 GSRAHIELFKRKKEQQTCILSKP-PDDYWQEIRTVQAMHEVVQGSRLKYDDVV 565 (591)
Q Consensus 514 ~a~~~~~~~~~~~~~~i~~l~~~-~~~~~~~~~~~~~~~d~~~a~~~~~~~~~ 565 (591)
+.. ...... +.+..+... ..........++..+|+.+|..+..+.-.
T Consensus 208 ~~~----~~~i~~-~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~ 255 (319)
T 2chq_A 208 AAI----GEVVDA-DTIYQITATARPEEMTELIQTALKGNFMEARELLDRLMV 255 (319)
T ss_dssp HHS----SSCBCH-HHHHHHTTCCCHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHc----CCCCCH-HHHHHHHCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 531 111111 223333332 33345566667778888888887765543
No 27
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.83 E-value=1.6e-19 Score=187.33 Aligned_cols=205 Identities=19% Similarity=0.228 Sum_probs=155.1
Q ss_pred cccCCCCccCCcHHHHHHHHHHHHh------------cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEE
Q 007723 284 ASEELIDPVIGRETEIQRIIQILCR------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMS 351 (591)
Q Consensus 284 ~r~~~~~~vvG~~~~i~~l~~~L~~------------~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ 351 (591)
..+-+|++++|.++.++.|.+.+.. ...++++|+||||||||++|+++|+.+. +..++.
T Consensus 6 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~---------~~~~~~ 76 (322)
T 1xwi_A 6 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN---------NSTFFS 76 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT---------SCEEEE
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC---------CCcEEE
Confidence 3456899999999999998887642 1236789999999999999999999762 456788
Q ss_pred eehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhccccc-----CCcEEE
Q 007723 352 LDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG-----RGELQC 426 (591)
Q Consensus 352 ld~~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le-----~g~v~l 426 (591)
++.+.+.. .+.|+.+..++.+|..+....+.||||||+|.+......+. .+....+.+.|+..++ ...+++
T Consensus 77 i~~~~l~~--~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~--~~~~~~~~~~ll~~ld~~~~~~~~v~v 152 (322)
T 1xwi_A 77 ISSSDLVS--KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENE--SEAARRIKTEFLVQMQGVGVDNDGILV 152 (322)
T ss_dssp EECCSSCC--SSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCC--TTHHHHHHHHHHHHHHCSSSCCTTEEE
T ss_pred EEhHHHHh--hhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhcccccccc--chHHHHHHHHHHHHHhcccccCCCEEE
Confidence 88777653 46778888899999988888899999999999976644321 1223344555554442 467899
Q ss_pred EecCChhHHHhhhcccHHHHccCc-ceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhhhcCCCcHH
Q 007723 427 IASTTQDEHRTQFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDK 505 (591)
Q Consensus 427 I~att~~e~~~~~~~d~aL~~Rf~-~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i~~~~lp~~ 505 (591)
|++||.. ..+|+++.|||+ .+.++.|+.+++.+|++.+... .+..+++..++.+++.+.+|.. ..
T Consensus 153 I~atn~~-----~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~----~~~~l~~~~l~~la~~t~G~sg-----ad 218 (322)
T 1xwi_A 153 LGATNIP-----WVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGT----TQNSLTEADFRELGRKTDGYSG-----AD 218 (322)
T ss_dssp EEEESCT-----TTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTT----CCBCCCHHHHHHHHHTCTTCCH-----HH
T ss_pred EEecCCc-----ccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHcCCCCH-----HH
Confidence 9999875 358899999996 6999999999999999766543 3667889999999998877632 23
Q ss_pred HHHHHHHHhh
Q 007723 506 AIDLVDEAGS 515 (591)
Q Consensus 506 ai~lld~a~a 515 (591)
.-.++++|+.
T Consensus 219 l~~l~~~A~~ 228 (322)
T 1xwi_A 219 ISIIVRDALM 228 (322)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 4456666653
No 28
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.82 E-value=3.4e-19 Score=183.83 Aligned_cols=252 Identities=15% Similarity=0.213 Sum_probs=174.2
Q ss_pred chHHHhhchhcccccccCCCCccCCcHHHHHHHHHHHHhcCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceE
Q 007723 270 ASALEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRI 349 (591)
Q Consensus 270 ~~~l~~~~~~l~~~~r~~~~~~vvG~~~~i~~l~~~L~~~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~ 349 (591)
...+.....+|+++++|..|++++|+++.++.+...+.....++++|+||||||||++|+.+++.+.+.. ....+
T Consensus 5 ~~~~~~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~-----~~~~~ 79 (327)
T 1iqp_A 5 IREVKVLEKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGEN-----WRHNF 79 (327)
T ss_dssp CHHHHHTTSCHHHHTCCCSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGG-----HHHHE
T ss_pred hhhhcccCCchhhccCCCCHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCc-----ccCce
Confidence 3456667789999999999999999999999999999888777899999999999999999999875321 12345
Q ss_pred EEeehhhhhccccccchHHHHHHHHHHH--HHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccC--CcEE
Q 007723 350 MSLDMGLLMAGAKERGELEARVTTLISE--IQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQ 425 (591)
Q Consensus 350 ~~ld~~~l~~g~~~~g~~~~~i~~i~~~--~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~--g~v~ 425 (591)
+.++.+.... ...+...+...... ....++.+|||||+|.+ ..+.++.|+..++. ..++
T Consensus 80 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l-------------~~~~~~~L~~~le~~~~~~~ 142 (327)
T 1iqp_A 80 LELNASDERG----INVIREKVKEFARTKPIGGASFKIIFLDEADAL-------------TQDAQQALRRTMEMFSSNVR 142 (327)
T ss_dssp EEEETTCHHH----HHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGS-------------CHHHHHHHHHHHHHTTTTEE
T ss_pred EEeeccccCc----hHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcC-------------CHHHHHHHHHHHHhcCCCCe
Confidence 5555433210 01111112221110 01145789999999999 55677888888863 5677
Q ss_pred EEecCChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhhhcCCCcHH
Q 007723 426 CIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDK 505 (591)
Q Consensus 426 lI~att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i~~~~lp~~ 505 (591)
+|++++... .+.+++.+||..+.+.+++.++...++..++.. .++.+++++++.++..+.+. +..
T Consensus 143 ~i~~~~~~~-----~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~~~g~------~r~ 207 (327)
T 1iqp_A 143 FILSCNYSS-----KIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAEN----EGLELTEEGLQAILYIAEGD------MRR 207 (327)
T ss_dssp EEEEESCGG-----GSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHT----TTCEECHHHHHHHHHHHTTC------HHH
T ss_pred EEEEeCCcc-----ccCHHHHhhCcEEEecCCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHCCCC------HHH
Confidence 787776642 467999999999999999999999888766553 48889999999999987654 556
Q ss_pred HHHHHHHHhhHhhhhhhccchhhhhhhhc-CChHHHHHHHHHHhhcchHHHHhhchhhH
Q 007723 506 AIDLVDEAGSRAHIELFKRKKEQQTCILS-KPPDDYWQEIRTVQAMHEVVQGSRLKYDD 563 (591)
Q Consensus 506 ai~lld~a~a~~~~~~~~~~~~~~i~~l~-~~~~~~~~~~~~~~~~~d~~~a~~~~~~~ 563 (591)
++.+++.+..... .... +.+..+. ............++..+|+..+..+..+.
T Consensus 208 ~~~~l~~~~~~~~----~i~~-~~v~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l 261 (327)
T 1iqp_A 208 AINILQAAAALDK----KITD-ENVFMVASRARPEDIREMMLLALKGNFLKAREKLREI 261 (327)
T ss_dssp HHHHHHHHHTTCS----EECH-HHHHHHTTCCCHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC----CCCH-HHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888877663211 1111 2222222 22333344445566667777777665444
No 29
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.81 E-value=3.3e-19 Score=183.09 Aligned_cols=211 Identities=18% Similarity=0.212 Sum_probs=159.1
Q ss_pred ccCCcHHHHHHHHHHHHh---------------cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehh
Q 007723 291 PVIGRETEIQRIIQILCR---------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMG 355 (591)
Q Consensus 291 ~vvG~~~~i~~l~~~L~~---------------~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~ 355 (591)
+++|+++.++.+.+++.. ....+++|+||||||||++|+++++.+.... ......++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~---~~~~~~~~~~~~~ 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLG---YVRKGHLVSVTRD 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTT---SSSSCCEEEECGG
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcC---CcCCCcEEEEcHH
Confidence 699999999888876542 2345789999999999999999999986533 2234578888887
Q ss_pred hhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccC--CcEEEEecCChh
Q 007723 356 LLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQCIASTTQD 433 (591)
Q Consensus 356 ~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~--g~v~lI~att~~ 433 (591)
.+.. .+.|.....+..++... .+.||||||+|.|...+.. ......+++.|+..++. ..+++|++++..
T Consensus 109 ~l~~--~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~----~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~ 179 (309)
T 3syl_A 109 DLVG--QYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNE----RDYGQEAIEILLQVMENNRDDLVVILAGYAD 179 (309)
T ss_dssp GTCC--SSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC-------CCTHHHHHHHHHHHHHCTTTCEEEEEECHH
T ss_pred Hhhh--hcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCc----ccccHHHHHHHHHHHhcCCCCEEEEEeCChH
Confidence 7753 34566666677776654 5679999999999754321 12356788888888874 478999999988
Q ss_pred HHHhhhcccHHHHccC-cceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhhhcCCC--cHHHHHHH
Q 007723 434 EHRTQFEKDKALARRF-QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYL--PDKAIDLV 510 (591)
Q Consensus 434 e~~~~~~~d~aL~~Rf-~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i~~~~l--p~~ai~ll 510 (591)
.+..++.++++|.+|| ..|.|++|+.+++..|++.++... ++.+++++++.++.++.+....... ...+..++
T Consensus 180 ~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~----~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l 255 (309)
T 3syl_A 180 RMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQ----NYQMTPEAETALRAYIGLRRNQPHFANARSIRNAL 255 (309)
T ss_dssp HHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHT----TCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHH
T ss_pred HHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHH
Confidence 7666777889999999 579999999999999998777654 7899999999999987644322221 34667788
Q ss_pred HHHhhHh
Q 007723 511 DEAGSRA 517 (591)
Q Consensus 511 d~a~a~~ 517 (591)
+.++...
T Consensus 256 ~~a~~~~ 262 (309)
T 3syl_A 256 DRARLRQ 262 (309)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887543
No 30
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.81 E-value=5.8e-19 Score=180.46 Aligned_cols=211 Identities=20% Similarity=0.314 Sum_probs=157.5
Q ss_pred hchhcccccccCCCCccCCcHHHHHHHHHHHHh------------cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCcc
Q 007723 276 FCVDLTARASEELIDPVIGRETEIQRIIQILCR------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVF 343 (591)
Q Consensus 276 ~~~~l~~~~r~~~~~~vvG~~~~i~~l~~~L~~------------~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~ 343 (591)
....+..++++..|++++|+++.++.+.+.+.. ....+++|+||||||||++|++++..+
T Consensus 7 ~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~-------- 78 (297)
T 3b9p_A 7 ILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC-------- 78 (297)
T ss_dssp HHTTTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT--------
T ss_pred HHHHhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh--------
Confidence 344566777888999999999999999887643 235689999999999999999999977
Q ss_pred ccCceEEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhccccc---
Q 007723 344 LLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG--- 420 (591)
Q Consensus 344 ~~~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le--- 420 (591)
+..++.++.+.+.. .+.|+.+..++.++..+....++||||||+|.+......+. ......+++.|+..++
T Consensus 79 --~~~~~~i~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~--~~~~~~~~~~ll~~l~~~~ 152 (297)
T 3b9p_A 79 --SATFLNISAASLTS--KYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSE--HEASRRLKTEFLVEFDGLP 152 (297)
T ss_dssp --TCEEEEEESTTTSS--SSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-------CCSHHHHHHHHHHHHHCC
T ss_pred --CCCeEEeeHHHHhh--cccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCc--chHHHHHHHHHHHHHhccc
Confidence 56788888877653 35677788888899888888889999999999976543211 1223445555554443
Q ss_pred ----CCcEEEEecCChhHHHhhhcccHHHHccCc-ceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHH
Q 007723 421 ----RGELQCIASTTQDEHRTQFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495 (591)
Q Consensus 421 ----~g~v~lI~att~~e~~~~~~~d~aL~~Rf~-~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r 495 (591)
...+++|++|+... .+++++.+||. .+.+..|+.+++..+++.+... .+..++++.++.+++.+.+
T Consensus 153 ~~~~~~~v~vi~~tn~~~-----~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~----~~~~~~~~~~~~la~~~~g 223 (297)
T 3b9p_A 153 GNPDGDRIVVLAATNRPQ-----ELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQK----QGSPLDTEALRRLAKITDG 223 (297)
T ss_dssp ------CEEEEEEESCGG-----GBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGG----GSCCSCHHHHHHHHHHTTT
T ss_pred ccCCCCcEEEEeecCChh-----hCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHcCC
Confidence 14588899888753 57899999996 6899999999999988766543 4778899999999998866
Q ss_pred hhhcCCCcHHHH-HHHHHHhh
Q 007723 496 YISDRYLPDKAI-DLVDEAGS 515 (591)
Q Consensus 496 ~i~~~~lp~~ai-~lld~a~a 515 (591)
|. ...+ .+++.|+.
T Consensus 224 ~~------~~~l~~l~~~a~~ 238 (297)
T 3b9p_A 224 YS------GSDLTALAKDAAL 238 (297)
T ss_dssp CC------HHHHHHHHHHHTT
T ss_pred CC------HHHHHHHHHHHHH
Confidence 53 3344 56666654
No 31
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.81 E-value=2.1e-19 Score=187.79 Aligned_cols=258 Identities=16% Similarity=0.131 Sum_probs=172.9
Q ss_pred HhhchhcccccccCCCCccCCcHHHHHHHHHHHHhcCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEee
Q 007723 274 EQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (591)
Q Consensus 274 ~~~~~~l~~~~r~~~~~~vvG~~~~i~~l~~~L~~~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld 353 (591)
..-..+|+++|+|..|++++|+++.++.+...+.....++++|+||||||||++++++++.+.... .....++.++
T Consensus 21 ~~~~~~~~~k~~p~~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~----~~~~~~~~~~ 96 (353)
T 1sxj_D 21 SLAQQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPD----LMKSRILELN 96 (353)
T ss_dssp -----CHHHHTCCSSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHH----HHTTSEEEEC
T ss_pred cccCccHHHhcCCCCHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCc----ccccceEEEc
Confidence 344578999999999999999999999999998877667899999999999999999999875310 0123455555
Q ss_pred hhhhhccccccchHHHHHHHHHHH-----------H-HhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccC
Q 007723 354 MGLLMAGAKERGELEARVTTLISE-----------I-QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR 421 (591)
Q Consensus 354 ~~~l~~g~~~~g~~~~~i~~i~~~-----------~-~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~ 421 (591)
.+... + .+.+.+.+..+... . ......||||||+|.+ ....++.|+..++.
T Consensus 97 ~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l-------------~~~~~~~Ll~~le~ 159 (353)
T 1sxj_D 97 ASDER-G---ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSM-------------TADAQSALRRTMET 159 (353)
T ss_dssp SSSCC-C---HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGS-------------CHHHHHHHHHHHHH
T ss_pred ccccc-c---hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCcc-------------CHHHHHHHHHHHHh
Confidence 43321 1 11111111111110 0 0124579999999999 45667788887763
Q ss_pred --CcEEEEecCChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhhhc
Q 007723 422 --GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499 (591)
Q Consensus 422 --g~v~lI~att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i~~ 499 (591)
...++|.+++.. ..+.+++.+||..+.+.+|+.++...++..++.. .++.+++++++.+++++.++
T Consensus 160 ~~~~~~~il~~~~~-----~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~----~~~~i~~~~l~~l~~~~~G~--- 227 (353)
T 1sxj_D 160 YSGVTRFCLICNYV-----TRIIDPLASQCSKFRFKALDASNAIDRLRFISEQ----ENVKCDDGVLERILDISAGD--- 227 (353)
T ss_dssp TTTTEEEEEEESCG-----GGSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHT----TTCCCCHHHHHHHHHHTSSC---
T ss_pred cCCCceEEEEeCch-----hhCcchhhccCceEEeCCCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHHcCCC---
Confidence 345666666654 2477999999999999999999999998776553 48899999999999998754
Q ss_pred CCCcHHHHHHHHHHhhHhhhhhhc-cchhhhhhhhcCC-hHHHHHHHHHHhhcchHHHHhhchhhHhhhc
Q 007723 500 RYLPDKAIDLVDEAGSRAHIELFK-RKKEQQTCILSKP-PDDYWQEIRTVQAMHEVVQGSRLKYDDVVAS 567 (591)
Q Consensus 500 ~~lp~~ai~lld~a~a~~~~~~~~-~~~~~~i~~l~~~-~~~~~~~~~~~~~~~d~~~a~~~~~~~~~~~ 567 (591)
+..++.+++.++....-.+.. ....+.+.++... ..........++..+|.+.+..+..+....+
T Consensus 228 ---~r~~~~~l~~~~~~~~~~~~~~~It~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g 294 (353)
T 1sxj_D 228 ---LRRGITLLQSASKGAQYLGDGKNITSTQVEELAGVVPHDILIEIVEKVKSGDFDEIKKYVNTFMKSG 294 (353)
T ss_dssp ---HHHHHHHHHHTHHHHHHHCSCCCCCHHHHHHHHTCCCSHHHHHHHHHHHSCCHHHHHHHHHHHHHTS
T ss_pred ---HHHHHHHHHHHHHhcCCCccCccccHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 556899998776543211100 1111223333332 3335566667778888888877766664443
No 32
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.81 E-value=4.4e-19 Score=184.71 Aligned_cols=197 Identities=21% Similarity=0.283 Sum_probs=144.4
Q ss_pred hhchhcccccccCCCCccCCcHHHHHHHHHHHHh-----cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceE
Q 007723 275 QFCVDLTARASEELIDPVIGRETEIQRIIQILCR-----RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRI 349 (591)
Q Consensus 275 ~~~~~l~~~~r~~~~~~vvG~~~~i~~l~~~L~~-----~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~ 349 (591)
.-...|.++++|..|++++|++..++.+...+.. ....+++|+||||||||++|+++++.+ +..+
T Consensus 14 ~~~~~~~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~----------~~~~ 83 (338)
T 3pfi_A 14 SFDETYETSLRPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM----------SANI 83 (338)
T ss_dssp ---------CCCCSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHT----------TCCE
T ss_pred chhhhhhhccCCCCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHh----------CCCe
Confidence 3445788999999999999999999998888765 334689999999999999999999886 4567
Q ss_pred EEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCCc------
Q 007723 350 MSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGE------ 423 (591)
Q Consensus 350 ~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g~------ 423 (591)
+.++...+. ..+. +...+.. ...+++|||||||.+ ..+.++.|+..++.+.
T Consensus 84 ~~~~~~~~~----~~~~----~~~~~~~--~~~~~vl~lDEi~~l-------------~~~~~~~Ll~~l~~~~~~~~~~ 140 (338)
T 3pfi_A 84 KTTAAPMIE----KSGD----LAAILTN--LSEGDILFIDEIHRL-------------SPAIEEVLYPAMEDYRLDIIIG 140 (338)
T ss_dssp EEEEGGGCC----SHHH----HHHHHHT--CCTTCEEEEETGGGC-------------CHHHHHHHHHHHHTSCC-----
T ss_pred EEecchhcc----chhH----HHHHHHh--ccCCCEEEEechhhc-------------CHHHHHHHHHHHHhccchhhcc
Confidence 777655432 1122 2222222 256789999999999 5667778877776543
Q ss_pred --------------EEEEecCChhHHHhhhcccHHHHccC-cceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHH
Q 007723 424 --------------LQCIASTTQDEHRTQFEKDKALARRF-QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINA 488 (591)
Q Consensus 424 --------------v~lI~att~~e~~~~~~~d~aL~~Rf-~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~ 488 (591)
+++|++|+... .++++|.+|| ..+.+.+|+.+++..++...+..+ ++.+++++++.
T Consensus 141 ~~~~~~~~~~~~~~~~~i~atn~~~-----~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~----~~~~~~~~~~~ 211 (338)
T 3pfi_A 141 SGPAAQTIKIDLPKFTLIGATTRAG-----MLSNPLRDRFGMQFRLEFYKDSELALILQKAALKL----NKTCEEKAALE 211 (338)
T ss_dssp ----CCCCCCCCCCCEEEEEESCGG-----GSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHT----TCEECHHHHHH
T ss_pred cCccccceecCCCCeEEEEeCCCcc-----ccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhc----CCCCCHHHHHH
Confidence 78999998854 3779999999 479999999999999998766654 78899999999
Q ss_pred HHHHhHHhhhcCCCcHHHHHHHHHHhhHhhh
Q 007723 489 AVHLSARYISDRYLPDKAIDLVDEAGSRAHI 519 (591)
Q Consensus 489 l~~~s~r~i~~~~lp~~ai~lld~a~a~~~~ 519 (591)
++..+.++ +..+..+++.+...+..
T Consensus 212 l~~~~~G~------~r~l~~~l~~~~~~a~~ 236 (338)
T 3pfi_A 212 IAKRSRST------PRIALRLLKRVRDFADV 236 (338)
T ss_dssp HHHTTTTC------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHCcC------HHHHHHHHHHHHHHHHh
Confidence 99876554 45577888777544443
No 33
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.80 E-value=1.1e-18 Score=183.59 Aligned_cols=213 Identities=20% Similarity=0.256 Sum_probs=145.5
Q ss_pred chhcccccccCC-CCccCCcHHHHHHH---HHHHHhcCC--CCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEE
Q 007723 277 CVDLTARASEEL-IDPVIGRETEIQRI---IQILCRRTK--NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIM 350 (591)
Q Consensus 277 ~~~l~~~~r~~~-~~~vvG~~~~i~~l---~~~L~~~~~--~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~ 350 (591)
+..+.++++|.. |++++|++..++.+ ...+..... ++++|+||||||||++|+++++.+.. .. .++
T Consensus 30 ~l~l~~~~~p~~~~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~-~~-------~~~ 101 (368)
T 3uk6_A 30 GLGLDDALEPRQASQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGP-DT-------PFT 101 (368)
T ss_dssp SCCBCTTSCBCSEETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCS-SC-------CEE
T ss_pred ccCcccccCcCcchhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcc-cC-------Ccc
Confidence 466778889988 99999999987764 444444433 48999999999999999999999842 11 222
Q ss_pred Eeehhhhhc---------------------------------------------c--ccccchHHHHHHHHHHHHHh---
Q 007723 351 SLDMGLLMA---------------------------------------------G--AKERGELEARVTTLISEIQK--- 380 (591)
Q Consensus 351 ~ld~~~l~~---------------------------------------------g--~~~~g~~~~~i~~i~~~~~~--- 380 (591)
.++...+.. + ..+.|++...++..+..+..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 181 (368)
T 3uk6_A 102 AIAGSEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWR 181 (368)
T ss_dssp EEEGGGGSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHH
T ss_pred cccchhhhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhh
Confidence 222211100 0 01123333444444444322
Q ss_pred -cC-----CeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCC--cEEEEec---------CChhHHHhhhcccH
Q 007723 381 -SG-----DVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG--ELQCIAS---------TTQDEHRTQFEKDK 443 (591)
Q Consensus 381 -~~-----~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g--~v~lI~a---------tt~~e~~~~~~~d~ 443 (591)
.+ ++||||||+|.+ ..+.++.|+..++.. .++++++ ++.+. ...+++
T Consensus 182 ~~g~~~~~~~vl~IDEi~~l-------------~~~~~~~L~~~le~~~~~~~ii~t~~~~~~i~~t~~~~---~~~l~~ 245 (368)
T 3uk6_A 182 EEGKAEIIPGVLFIDEVHML-------------DIESFSFLNRALESDMAPVLIMATNRGITRIRGTSYQS---PHGIPI 245 (368)
T ss_dssp HHTC---CBCEEEEESGGGS-------------BHHHHHHHHHHTTCTTCCEEEEEESCSEEECBTSSCEE---ETTCCH
T ss_pred hhccccccCceEEEhhcccc-------------ChHHHHHHHHHhhCcCCCeeeeecccceeeeeccCCCC---cccCCH
Confidence 12 469999999999 567788888877643 3333333 22221 345789
Q ss_pred HHHccCcceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhhhcCCCcHHHHHHHHHHhhHhhhhhh
Q 007723 444 ALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELF 522 (591)
Q Consensus 444 aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i~~~~lp~~ai~lld~a~a~~~~~~~ 522 (591)
+|.+||..+.+++|+.+++.++|+..+.. .++.+++++++.+++++.. .-++.++++++.|+..+...+.
T Consensus 246 ~l~sR~~~i~~~~~~~~e~~~il~~~~~~----~~~~~~~~~l~~l~~~~~~-----G~~r~~~~ll~~a~~~A~~~~~ 315 (368)
T 3uk6_A 246 DLLDRLLIVSTTPYSEKDTKQILRIRCEE----EDVEMSEDAYTVLTRIGLE-----TSLRYAIQLITAASLVCRKRKG 315 (368)
T ss_dssp HHHTTEEEEEECCCCHHHHHHHHHHHHHH----TTCCBCHHHHHHHHHHHHH-----SCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHhhccEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999877664 3789999999999999873 1256799999999876655433
No 34
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.80 E-value=7.4e-19 Score=183.54 Aligned_cols=248 Identities=15% Similarity=0.150 Sum_probs=176.1
Q ss_pred chhcccccccCCCCccCCcHHHHHHHHHHHHhcCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhh
Q 007723 277 CVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGL 356 (591)
Q Consensus 277 ~~~l~~~~r~~~~~~vvG~~~~i~~l~~~L~~~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~ 356 (591)
..+|.++|||..|++++|++..++.|...+.....++++|+||||+|||++++++++.+.+.. ....+..++.+.
T Consensus 12 ~~~~~~k~rp~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~-----~~~~~~~~~~~~ 86 (340)
T 1sxj_C 12 NLPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKN-----YSNMVLELNASD 86 (340)
T ss_dssp CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTS-----HHHHEEEECTTS
T ss_pred CCchHHHhCCCcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCC-----ccceEEEEcCcc
Confidence 468999999999999999999999999999887777899999999999999999999985421 123455555432
Q ss_pred hhccccccchHHHHHHHHHHHHHh------cCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccC--CcEEEEe
Q 007723 357 LMAGAKERGELEARVTTLISEIQK------SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQCIA 428 (591)
Q Consensus 357 l~~g~~~~g~~~~~i~~i~~~~~~------~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~--g~v~lI~ 428 (591)
..+ ...++..+..+.+ .+..|++|||+|.+ ..+.++.|+..++. ....+|+
T Consensus 87 ------~~~--~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l-------------~~~~~~~L~~~le~~~~~~~~il 145 (340)
T 1sxj_C 87 ------DRG--IDVVRNQIKDFASTRQIFSKGFKLIILDEADAM-------------TNAAQNALRRVIERYTKNTRFCV 145 (340)
T ss_dssp ------CCS--HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGS-------------CHHHHHHHHHHHHHTTTTEEEEE
T ss_pred ------ccc--HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCC-------------CHHHHHHHHHHHhcCCCCeEEEE
Confidence 112 1223444444332 24689999999999 55678888888873 4567777
Q ss_pred cCChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhhhcCCCcHHHHH
Q 007723 429 STTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAID 508 (591)
Q Consensus 429 att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i~~~~lp~~ai~ 508 (591)
+++.. ..+.+++.+||..+.+.+++.++..+++..++.. .++.+++++++.++.++.+.++ +++.
T Consensus 146 ~~n~~-----~~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~~----~~~~i~~~~~~~i~~~s~G~~r------~~~~ 210 (340)
T 1sxj_C 146 LANYA-----HKLTPALLSQCTRFRFQPLPQEAIERRIANVLVH----EKLKLSPNAEKALIELSNGDMR------RVLN 210 (340)
T ss_dssp EESCG-----GGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHT----TTCCBCHHHHHHHHHHHTTCHH------HHHH
T ss_pred EecCc-----cccchhHHhhceeEeccCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCHH------HHHH
Confidence 77653 3577999999999999999999998888776643 3789999999999999876644 5788
Q ss_pred HHHHHhhHhhhhhhccchhhhhhhhc-CChHHHHHHHHHHhhcchHHHHhhchhhHhh
Q 007723 509 LVDEAGSRAHIELFKRKKEQQTCILS-KPPDDYWQEIRTVQAMHEVVQGSRLKYDDVV 565 (591)
Q Consensus 509 lld~a~a~~~~~~~~~~~~~~i~~l~-~~~~~~~~~~~~~~~~~d~~~a~~~~~~~~~ 565 (591)
+|+.++......+......+.+..+. .............+..+|+..|..+..+.-.
T Consensus 211 ~l~~~~~~~~~~~~~~it~~~v~~~~~~~~~~~i~~l~~~i~~~~~~~al~~l~~l~~ 268 (340)
T 1sxj_C 211 VLQSCKATLDNPDEDEISDDVIYECCGAPRPSDLKAVLKSILEDDWGTAHYTLNKVRS 268 (340)
T ss_dssp HTTTTTTTTCSSSCCCBCHHHHHHHTTCCCHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCcccccccHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88665432211000011112333333 3334455666677888899888887776554
No 35
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.80 E-value=1.2e-18 Score=176.96 Aligned_cols=204 Identities=22% Similarity=0.306 Sum_probs=148.9
Q ss_pred cCCCCccCCcHHHHHHHHHHHHh-------------cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEe
Q 007723 286 EELIDPVIGRETEIQRIIQILCR-------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSL 352 (591)
Q Consensus 286 ~~~~~~vvG~~~~i~~l~~~L~~-------------~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~l 352 (591)
+-.|++++|+++.++.|.+.+.. ...++++|+||||||||++|++++..+ +..++.+
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~----------~~~~~~v 82 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET----------NATFIRV 82 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT----------TCEEEEE
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh----------CCCEEEE
Confidence 34789999999999999887644 355789999999999999999999987 6678888
Q ss_pred ehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccc-------cCCcEE
Q 007723 353 DMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL-------GRGELQ 425 (591)
Q Consensus 353 d~~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~l-------e~g~v~ 425 (591)
+...+.. .+.|.....++.++..+....+.||||||+|.+........ .++..+.++.|...+ ..+.++
T Consensus 83 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~--~~~~~~~~~~l~~ll~~~~~~~~~~~~~ 158 (285)
T 3h4m_A 83 VGSELVK--KFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDAL--TGGDREVQRTLMQLLAEMDGFDARGDVK 158 (285)
T ss_dssp EGGGGCC--CSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSC--CGGGGHHHHHHHHHHHHHHTTCSSSSEE
T ss_pred ehHHHHH--hccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCcccc--CCccHHHHHHHHHHHHHhhCCCCCCCEE
Confidence 8877763 35778888899999988888889999999999976543211 122334444443333 245789
Q ss_pred EEecCChhHHHhhhcccHHHHc--cCc-ceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhhhcCCC
Q 007723 426 CIASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYL 502 (591)
Q Consensus 426 lI~att~~e~~~~~~~d~aL~~--Rf~-~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i~~~~l 502 (591)
+|++|+..+ .+++++.+ ||. .+.++.|+.+++.+|++.....+ ++. .+..+..++..+.+| .
T Consensus 159 vI~ttn~~~-----~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~----~~~-~~~~~~~l~~~~~g~-----~ 223 (285)
T 3h4m_A 159 IIGATNRPD-----ILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKM----NLA-EDVNLEEIAKMTEGC-----V 223 (285)
T ss_dssp EEEECSCGG-----GBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTS----CBC-TTCCHHHHHHHCTTC-----C
T ss_pred EEEeCCCch-----hcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcC----CCC-CcCCHHHHHHHcCCC-----C
Confidence 999998753 57899999 997 69999999999999997665432 222 222366777776655 3
Q ss_pred cHHHHHHHHHHhhHhh
Q 007723 503 PDKAIDLVDEAGSRAH 518 (591)
Q Consensus 503 p~~ai~lld~a~a~~~ 518 (591)
+.....+++.|...+.
T Consensus 224 ~~~i~~l~~~a~~~a~ 239 (285)
T 3h4m_A 224 GAELKAICTEAGMNAI 239 (285)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455667777765443
No 36
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.80 E-value=2e-18 Score=181.61 Aligned_cols=249 Identities=16% Similarity=0.126 Sum_probs=173.2
Q ss_pred hhcccccccCCCCccCCcHHHHHHHHHHHHhcCCCC-CeEecCCCCcHHHHHHHHHHHHHhCCCCcc--c----------
Q 007723 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPVF--L---------- 344 (591)
Q Consensus 278 ~~l~~~~r~~~~~~vvG~~~~i~~l~~~L~~~~~~~-ilL~GppGvGKT~la~~lA~~l~~~~~p~~--~---------- 344 (591)
.+|.++|+|..|++++|++++++.+...+.....++ ++|+||+|||||++++.+++.+.+...... .
T Consensus 4 ~~l~~k~rp~~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~ 83 (373)
T 1jr3_A 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIE 83 (373)
T ss_dssp CCHHHHTCCCSTTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHH
T ss_pred HHHHHhhCCCchhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHh
Confidence 468899999999999999999999999988766555 689999999999999999998854321100 0
Q ss_pred --cCceEEEeehhhhhccccccchHHHHHHHHHHHHHh----cCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhccc
Q 007723 345 --LSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPS 418 (591)
Q Consensus 345 --~~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~~----~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~ 418 (591)
....++.++... .....+ ++.+++.+.. .++.||||||+|.+ ....++.|+..
T Consensus 84 ~~~~~~~~~~~~~~----~~~~~~----~~~l~~~~~~~~~~~~~~vliiDe~~~l-------------~~~~~~~Ll~~ 142 (373)
T 1jr3_A 84 QGRFVDLIEIDAAS----RTKVED----TRDLLDNVQYAPARGRFKVYLIDEVHML-------------SRHSFNALLKT 142 (373)
T ss_dssp TSCCSSCEEEETTC----SCCSSC----HHHHHHHTTSCCSSSSSEEEEEECGGGS-------------CHHHHHHHHHH
T ss_pred ccCCCceEEecccc----cCCHHH----HHHHHHHHhhccccCCeEEEEEECcchh-------------cHHHHHHHHHH
Confidence 001234443221 011122 3445554432 34689999999999 55667888888
Q ss_pred ccC--CcEEEEecCChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHh
Q 007723 419 LGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (591)
Q Consensus 419 le~--g~v~lI~att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~ 496 (591)
++. ..+++|++++... .+.+++.+||..+.+.+|+.+++..++..++... ++.+++++++.+++.+.++
T Consensus 143 le~~~~~~~~Il~~~~~~-----~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~----~~~~~~~a~~~l~~~~~G~ 213 (373)
T 1jr3_A 143 LEEPPEHVKFLLATTDPQ-----KLPVTILSRCLQFHLKALDVEQIRHQLEHILNEE----HIAHEPRALQLLARAAEGS 213 (373)
T ss_dssp HHSCCSSEEEEEEESCGG-----GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHH----TCCBCHHHHHHHHHHSSSC
T ss_pred HhcCCCceEEEEEeCChH-----hCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHCCCC
Confidence 774 5677888777543 4578999999999999999999999998777654 8899999999999988654
Q ss_pred hhcCCCcHHHHHHHHHHhhHhhhhhhccchhhhhhhhcCCh-HHHHHHHHHHhhcchHHHHhhchhhHhhh
Q 007723 497 ISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPP-DDYWQEIRTVQAMHEVVQGSRLKYDDVVA 566 (591)
Q Consensus 497 i~~~~lp~~ai~lld~a~a~~~~~~~~~~~~~~i~~l~~~~-~~~~~~~~~~~~~~d~~~a~~~~~~~~~~ 566 (591)
+..++.+++.+.... . .....+.+..+.... .........++..+|...+..+.++....
T Consensus 214 ------~r~~~~~l~~~~~~~---~-~~i~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~ 274 (373)
T 1jr3_A 214 ------LRDALSLTDQAIASG---D-GQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAAR 274 (373)
T ss_dssp ------HHHHHHHHHHHHHHT---T-TCBCHHHHHHHTTCCCHHHHHHHHHHHHHTCHHHHHHHHHHHHHT
T ss_pred ------HHHHHHHHHHHHHhc---C-CcccHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 556888888876432 1 111222344443332 33444556677778887777776655443
No 37
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.80 E-value=6.6e-19 Score=190.57 Aligned_cols=212 Identities=19% Similarity=0.226 Sum_probs=153.3
Q ss_pred chhcccccccCCCCccCCcHHHHHHHHHHHH------------hcCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccc
Q 007723 277 CVDLTARASEELIDPVIGRETEIQRIIQILC------------RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFL 344 (591)
Q Consensus 277 ~~~l~~~~r~~~~~~vvG~~~~i~~l~~~L~------------~~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~ 344 (591)
...+.....+..|++++|++..++.|.+.+. ....+++||+||||||||++|+++|..+.
T Consensus 121 ~~~i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~-------- 192 (444)
T 2zan_A 121 QGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-------- 192 (444)
T ss_dssp ---CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCC--------
T ss_pred hcceeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcC--------
Confidence 4445566677899999999999999988763 12346799999999999999999999761
Q ss_pred cCceEEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhccccc----
Q 007723 345 LSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG---- 420 (591)
Q Consensus 345 ~~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le---- 420 (591)
+..++.++.+.+.. .+.|+.+..++.+|..+....++||||||||.+.+.+..+. .+....+.+.|+..++
T Consensus 193 -~~~~~~v~~~~l~~--~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~--~~~~~~~~~~lL~~l~~~~~ 267 (444)
T 2zan_A 193 -NSTFFSISSSDLVS--KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENE--SEAARRIKTEFLVQMQGVGV 267 (444)
T ss_dssp -SSEEEEECCC-----------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCC--CGGGHHHHHHHHTTTTCSSC
T ss_pred -CCCEEEEeHHHHHh--hhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCcc--ccHHHHHHHHHHHHHhCccc
Confidence 45677888776653 34555566688888888878889999999999976543321 1334456666666553
Q ss_pred -CCcEEEEecCChhHHHhhhcccHHHHccCc-ceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhhh
Q 007723 421 -RGELQCIASTTQDEHRTQFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYIS 498 (591)
Q Consensus 421 -~g~v~lI~att~~e~~~~~~~d~aL~~Rf~-~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i~ 498 (591)
...+++|++||.. ..++++|.|||. .+.++.|+.+++..|++.++.. .+..+++..++.++..+.+|..
T Consensus 268 ~~~~v~vI~atn~~-----~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~----~~~~l~~~~l~~la~~t~G~sg 338 (444)
T 2zan_A 268 DNDGILVLGATNIP-----WVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGS----TQNSLTEADFQELGRKTDGYSG 338 (444)
T ss_dssp CCSSCEEEEEESCG-----GGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTT----SCEECCHHHHHHHHHHTTTCCH
T ss_pred CCCCEEEEecCCCc-----cccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHcCCCCH
Confidence 4578999999885 358899999997 6899999999999999766543 3566789999999999877633
Q ss_pred cCCCcHHHHHHHHHHhh
Q 007723 499 DRYLPDKAIDLVDEAGS 515 (591)
Q Consensus 499 ~~~lp~~ai~lld~a~a 515 (591)
...-.++++|+.
T Consensus 339 -----adl~~l~~~a~~ 350 (444)
T 2zan_A 339 -----ADISIIVRDALM 350 (444)
T ss_dssp -----HHHHHHHHHHHT
T ss_pred -----HHHHHHHHHHHH
Confidence 234556666654
No 38
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.79 E-value=9.2e-18 Score=193.56 Aligned_cols=179 Identities=17% Similarity=0.220 Sum_probs=131.2
Q ss_pred CccCCcHHHHHHHHHHHHhcC---------CCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhc-
Q 007723 290 DPVIGRETEIQRIIQILCRRT---------KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA- 359 (591)
Q Consensus 290 ~~vvG~~~~i~~l~~~L~~~~---------~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~- 359 (591)
..++|+++.++.+...+.... ..+++|+||||||||++|+++++.+ +..++.+|++.+..
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l----------~~~~~~i~~s~~~~~ 527 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL----------GIELLRFDMSEYMER 527 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH----------TCEEEEEEGGGCSSS
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh----------cCCEEEEechhhcch
Confidence 458999999999888766421 1368999999999999999999988 46788888887643
Q ss_pred -------ccc--ccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCC--------
Q 007723 360 -------GAK--ERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-------- 422 (591)
Q Consensus 360 -------g~~--~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g-------- 422 (591)
|.. +.|.-+ ...+.+.+...+++|||||||+.+ ..++++.|++.|+.+
T Consensus 528 ~~~~~l~g~~~g~~g~~~--~~~l~~~~~~~~~~vl~lDEi~~~-------------~~~~~~~Ll~~le~~~~~~~~g~ 592 (758)
T 1r6b_X 528 HTVSRLIGAPPGYVGFDQ--GGLLTDAVIKHPHAVLLLDEIEKA-------------HPDVFNILLQVMDNGTLTDNNGR 592 (758)
T ss_dssp SCCSSSCCCCSCSHHHHH--TTHHHHHHHHCSSEEEEEETGGGS-------------CHHHHHHHHHHHHHSEEEETTTE
T ss_pred hhHhhhcCCCCCCcCccc--cchHHHHHHhCCCcEEEEeCcccc-------------CHHHHHHHHHHhcCcEEEcCCCC
Confidence 111 222111 122344455677899999999998 678999999998754
Q ss_pred -----cEEEEecCChhH---------HH---------h--hhcccHHHHccCc-ceeecCCCHHHHHHHHHHHHHHHHhh
Q 007723 423 -----ELQCIASTTQDE---------HR---------T--QFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAH 476 (591)
Q Consensus 423 -----~v~lI~att~~e---------~~---------~--~~~~d~aL~~Rf~-~i~i~~p~~~e~~~iL~~~~~~~~~~ 476 (591)
++++|++||... |. . .-.++++|.+||. .|.|++|+.+++..|+...+.++...
T Consensus 593 ~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~ 672 (758)
T 1r6b_X 593 KADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQ 672 (758)
T ss_dssp EEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHH
T ss_pred EEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHHH
Confidence 356898888631 00 0 0145799999995 68999999999999998877655321
Q ss_pred -----cCCCCcHHHHHHHHHHh
Q 007723 477 -----HNCKFTLEAINAAVHLS 493 (591)
Q Consensus 477 -----~~i~i~~~al~~l~~~s 493 (591)
..+.++++++++++.++
T Consensus 673 ~~~~~~~~~~~~~a~~~l~~~~ 694 (758)
T 1r6b_X 673 LDQKGVSLEVSQEARNWLAEKG 694 (758)
T ss_dssp HHHTTEEEEECHHHHHHHHHHH
T ss_pred HHHCCcEEEeCHHHHHHHHHhC
Confidence 24578999999999875
No 39
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.79 E-value=3.2e-18 Score=176.23 Aligned_cols=196 Identities=18% Similarity=0.247 Sum_probs=152.6
Q ss_pred hhcccccccCCCCccCCcHHHHHHHHHHHHhcCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhh
Q 007723 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLL 357 (591)
Q Consensus 278 ~~l~~~~r~~~~~~vvG~~~~i~~l~~~L~~~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l 357 (591)
.+|.++++|..|++++|++..++.+...+.....++++|+||+|+|||++++.+++.+.+.. ....++.++....
T Consensus 9 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~-----~~~~~~~~~~~~~ 83 (323)
T 1sxj_B 9 LPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRS-----YADGVLELNASDD 83 (323)
T ss_dssp CCHHHHTCCSSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGG-----HHHHEEEECTTSC
T ss_pred CcHHHhcCCCCHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCc-----ccCCEEEecCccc
Confidence 47889999999999999999999999999887777799999999999999999999885421 1234555554321
Q ss_pred hccccccchHHHHHHHHHHHHH-------hcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccC--CcEEEEe
Q 007723 358 MAGAKERGELEARVTTLISEIQ-------KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQCIA 428 (591)
Q Consensus 358 ~~g~~~~g~~~~~i~~i~~~~~-------~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~--g~v~lI~ 428 (591)
.+ ...++.++..+. ...+.||||||+|.+ ....++.|+..++. ..+++|+
T Consensus 84 ------~~--~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l-------------~~~~~~~L~~~le~~~~~~~~il 142 (323)
T 1sxj_B 84 ------RG--IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSM-------------TAGAQQALRRTMELYSNSTRFAF 142 (323)
T ss_dssp ------CS--HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGS-------------CHHHHHTTHHHHHHTTTTEEEEE
T ss_pred ------cC--hHHHHHHHHHHHhccccCCCCCceEEEEECcccC-------------CHHHHHHHHHHHhccCCCceEEE
Confidence 11 223455555544 234789999999999 45667888888874 5577777
Q ss_pred cCChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhhhcCCCcHHHHH
Q 007723 429 STTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAID 508 (591)
Q Consensus 429 att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i~~~~lp~~ai~ 508 (591)
+|+.. ..+.+++.+||..+.+.+|+.++..++|..++... ++.+++++++.+++++.+. +..++.
T Consensus 143 ~~~~~-----~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~l~~~~~G~------~r~a~~ 207 (323)
T 1sxj_B 143 ACNQS-----NKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLE----DVKYTNDGLEAIIFTAEGD------MRQAIN 207 (323)
T ss_dssp EESCG-----GGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHH----TCCBCHHHHHHHHHHHTTC------HHHHHH
T ss_pred EeCCh-----hhchhHHHhhceEEeecCCCHHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHcCCC------HHHHHH
Confidence 77663 24679999999999999999999999998777654 8889999999999988655 556888
Q ss_pred HHHHHh
Q 007723 509 LVDEAG 514 (591)
Q Consensus 509 lld~a~ 514 (591)
+++.++
T Consensus 208 ~l~~~~ 213 (323)
T 1sxj_B 208 NLQSTV 213 (323)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887766
No 40
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.79 E-value=2.7e-19 Score=203.95 Aligned_cols=238 Identities=21% Similarity=0.221 Sum_probs=169.1
Q ss_pred cCCCCccCCcHHHHHHHHHHHHh-------------cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEe
Q 007723 286 EELIDPVIGRETEIQRIIQILCR-------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSL 352 (591)
Q Consensus 286 ~~~~~~vvG~~~~i~~l~~~L~~-------------~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~l 352 (591)
.-.|++|.|.++.++.|.+++.- ..+.++||+||||||||+||+++|.++ +..++.+
T Consensus 200 ~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el----------g~~~~~v 269 (806)
T 3cf2_A 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET----------GAFFFLI 269 (806)
T ss_dssp SCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT----------TCEEEEE
T ss_pred CCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh----------CCeEEEE
Confidence 34788999999888888776432 124679999999999999999999877 7889999
Q ss_pred ehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccc----cCCcEEEEe
Q 007723 353 DMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL----GRGELQCIA 428 (591)
Q Consensus 353 d~~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~l----e~g~v~lI~ 428 (591)
+...++ .++.|+.+..++.+|..+....++||||||+|.|...+..+.+ +....+.+.|+..| +++.+.+|+
T Consensus 270 ~~~~l~--sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~--~~~~riv~~LL~~mdg~~~~~~V~VIa 345 (806)
T 3cf2_A 270 NGPEIM--SKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHG--EVERRIVSQLLTLMDGLKQRAHVIVMA 345 (806)
T ss_dssp EHHHHH--SSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCC--TTHHHHHHHHHTHHHHCCGGGCEEEEE
T ss_pred EhHHhh--cccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCC--hHHHHHHHHHHHHHhcccccCCEEEEE
Confidence 999887 4578999999999999998888999999999999876543222 33445666666655 356799999
Q ss_pred cCChhHHHhhhcccHHHHc--cCc-ceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHH-HHHHHHHHhHHhhhcCCCcH
Q 007723 429 STTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLE-AINAAVHLSARYISDRYLPD 504 (591)
Q Consensus 429 att~~e~~~~~~~d~aL~~--Rf~-~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~-al~~l~~~s~r~i~~~~lp~ 504 (591)
+||..+ .+|++|+| ||+ .|.++.|+.+++.+||+.+... +.+.++ .+..++..+.+|. +.
T Consensus 346 aTN~~d-----~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~------~~~~~dvdl~~lA~~T~Gfs-----ga 409 (806)
T 3cf2_A 346 ATNRPN-----SIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN------MKLADDVDLEQVANETHGHV-----GA 409 (806)
T ss_dssp ECSSTT-----TSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSS------SEECTTCCHHHHHHHCCSCC-----HH
T ss_pred ecCChh-----hcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcC------CCCCcccCHHHHHHhcCCCC-----HH
Confidence 999853 68999999 998 5999999999999999765442 222222 3677888777664 33
Q ss_pred HHHHHHHHHhhHhhhhhhccchhhhhhhhcCChHHHHHHHHHHhhcchHHHHhhc
Q 007723 505 KAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRL 559 (591)
Q Consensus 505 ~ai~lld~a~a~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~d~~~a~~~ 559 (591)
....++++|+..+..+....... ....... .......++.+||..|.+-
T Consensus 410 DL~~Lv~eA~~~A~~r~~~~i~~-----~~~~~~~-e~~~~~~v~~~Df~~Al~~ 458 (806)
T 3cf2_A 410 DLAALCSEAALQAIRKKMDLIDL-----EDETIDA-EVMNSLAVTMDDFRWALSQ 458 (806)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGG-----TCCCCSH-HHHHHCEECTTHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHhccccccc-----cccccch-hhhccceeeHHHHHHHHHh
Confidence 45667777765433322211110 0011111 1112245788888887763
No 41
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.79 E-value=2.9e-18 Score=165.79 Aligned_cols=197 Identities=22% Similarity=0.256 Sum_probs=147.5
Q ss_pred hhcccccccCCCCccCCcHHHHHHHHHHHHhcCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhh
Q 007723 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLL 357 (591)
Q Consensus 278 ~~l~~~~r~~~~~~vvG~~~~i~~l~~~L~~~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l 357 (591)
.+|.++++|..|++++|++++++.+.+.+.....++++|+||+|||||++++.+++.+.... ....++.++....
T Consensus 5 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~-----~~~~~~~~~~~~~ 79 (226)
T 2chg_A 5 EIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGEN-----WRDNFIEMNASDE 79 (226)
T ss_dssp CCHHHHTSCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGG-----GGGGEEEEETTCT
T ss_pred hhHHHhcCCCCHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccc-----cccceEEeccccc
Confidence 46788899999999999999999999999887777899999999999999999999875421 1334555554322
Q ss_pred hccccccchHHHHHHHHHHHHH------hcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhccccc--CCcEEEEec
Q 007723 358 MAGAKERGELEARVTTLISEIQ------KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG--RGELQCIAS 429 (591)
Q Consensus 358 ~~g~~~~g~~~~~i~~i~~~~~------~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le--~g~v~lI~a 429 (591)
. + . ..+...+.... ...+.+|||||+|.+ ..+.++.|...++ ...+++|++
T Consensus 80 ~------~-~-~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l-------------~~~~~~~l~~~l~~~~~~~~~i~~ 138 (226)
T 2chg_A 80 R------G-I-DVVRHKIKEFARTAPIGGAPFKIIFLDEADAL-------------TADAQAALRRTMEMYSKSCRFILS 138 (226)
T ss_dssp T------C-H-HHHHHHHHHHHTSCCSTTCSCEEEEEETGGGS-------------CHHHHHHHHHHHHHTTTTEEEEEE
T ss_pred c------C-h-HHHHHHHHHHhcccCCCccCceEEEEeChhhc-------------CHHHHHHHHHHHHhcCCCCeEEEE
Confidence 1 1 1 11222222222 146789999999999 4455666776665 346777777
Q ss_pred CChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhhhcCCCcHHHHHH
Q 007723 430 TTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDL 509 (591)
Q Consensus 430 tt~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i~~~~lp~~ai~l 509 (591)
++... .+++++.+||..+.+.+|+.++..+++....... ++.+++++++.+++.+.+. |..++.+
T Consensus 139 ~~~~~-----~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~l~~~~~g~------~r~l~~~ 203 (226)
T 2chg_A 139 CNYVS-----RIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKE----GVKITEDGLEALIYISGGD------FRKAINA 203 (226)
T ss_dssp ESCGG-----GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHH----TCCBCHHHHHHHHHHHTTC------HHHHHHH
T ss_pred eCChh-----hcCHHHHHhCceeecCCCCHHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHcCCC------HHHHHHH
Confidence 77642 4679999999999999999999999998776654 7889999999999877554 5568888
Q ss_pred HHHHhh
Q 007723 510 VDEAGS 515 (591)
Q Consensus 510 ld~a~a 515 (591)
++.++.
T Consensus 204 l~~~~~ 209 (226)
T 2chg_A 204 LQGAAA 209 (226)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 887764
No 42
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.76 E-value=4.6e-18 Score=185.51 Aligned_cols=241 Identities=20% Similarity=0.211 Sum_probs=167.7
Q ss_pred cccCCCCccCCcHHHHHHHHHHHHh-------------cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEE
Q 007723 284 ASEELIDPVIGRETEIQRIIQILCR-------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIM 350 (591)
Q Consensus 284 ~r~~~~~~vvG~~~~i~~l~~~L~~-------------~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~ 350 (591)
.++..|++++|++..+++|.+.+.. ....++||+||||||||++|++++..+ +..++
T Consensus 198 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~----------~~~fv 267 (489)
T 3hu3_A 198 LNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET----------GAFFF 267 (489)
T ss_dssp HTCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC----------SSEEE
T ss_pred cCCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh----------CCCEE
Confidence 3556789999999999999887653 345679999999999999999999876 67899
Q ss_pred EeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhccccc----CCcEEE
Q 007723 351 SLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG----RGELQC 426 (591)
Q Consensus 351 ~ld~~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le----~g~v~l 426 (591)
.++++.+.. .+.|+.+..++.+|..+....++||||||||.|........+ +....+++.|+..|+ ...+++
T Consensus 268 ~vn~~~l~~--~~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~--~~~~~~~~~LL~~ld~~~~~~~v~v 343 (489)
T 3hu3_A 268 LINGPEIMS--KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHG--EVERRIVSQLLTLMDGLKQRAHVIV 343 (489)
T ss_dssp EEEHHHHHT--SCTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCC--HHHHHHHHHHHHHHHHSCTTSCEEE
T ss_pred EEEchHhhh--hhcchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccc--hHHHHHHHHHHHHhhccccCCceEE
Confidence 999988873 466888888999999998888899999999999766432111 223456677776664 567999
Q ss_pred EecCChhHHHhhhcccHHHHc--cCc-ceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhhhcCCCc
Q 007723 427 IASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLP 503 (591)
Q Consensus 427 I~att~~e~~~~~~~d~aL~~--Rf~-~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i~~~~lp 503 (591)
|++||.+. .+++++.+ ||. .+.+..|+.+++.+||+.+...+ .+. .+..+..++..+.+|. +
T Consensus 344 IaaTn~~~-----~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~----~l~-~~~~l~~la~~t~g~s-----~ 408 (489)
T 3hu3_A 344 MAATNRPN-----SIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNM----KLA-DDVDLEQVANETHGHV-----G 408 (489)
T ss_dssp EEEESCGG-----GBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTS----CBC-TTCCHHHHHHTCTTCC-----H
T ss_pred EEecCCcc-----ccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcC----CCc-chhhHHHHHHHccCCc-----H
Confidence 99999863 47899998 887 49999999999999997665432 222 1223566666665553 3
Q ss_pred HHHHHHHHHHhhHhhhhhhccchhhhhhhhcCChHHHHHHHHHHhhcchHHHHhhc
Q 007723 504 DKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRL 559 (591)
Q Consensus 504 ~~ai~lld~a~a~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~d~~~a~~~ 559 (591)
...-.++++|+..+..+...... +..............++.+||+.|.+-
T Consensus 409 ~dL~~L~~~A~~~a~r~~~~~i~------~~~~~~~~~~~~~~~vt~edf~~Al~~ 458 (489)
T 3hu3_A 409 ADLAALCSEAALQAIRKKMDLID------LEDETIDAEVMNSLAVTMDDFRWALSQ 458 (489)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTCC------TTCSSCCHHHHHHCCBCHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHhcccccc------ccccccchhhcccCcCCHHHHHHHHHh
Confidence 34455667766544332221110 000000011122345888899888764
No 43
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.76 E-value=2.1e-19 Score=204.87 Aligned_cols=202 Identities=18% Similarity=0.263 Sum_probs=131.2
Q ss_pred cCCCCccCCcHHHHHHHHHHHHh-------------cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEe
Q 007723 286 EELIDPVIGRETEIQRIIQILCR-------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSL 352 (591)
Q Consensus 286 ~~~~~~vvG~~~~i~~l~~~L~~-------------~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~l 352 (591)
.-.++++.|.++..+.|.+.+.. ....++|||||||||||++|+++|.++ +..++.+
T Consensus 473 ~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~----------~~~f~~v 542 (806)
T 3cf2_A 473 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISI 542 (806)
T ss_dssp CCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT----------TCEEEEC
T ss_pred CCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh----------CCceEEe
Confidence 34678899999988888776432 234679999999999999999999987 7889999
Q ss_pred ehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCC-CCccHHHHHhhccccc----CCcEEEE
Q 007723 353 DMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGN-KGTGLDISNLLKPSLG----RGELQCI 427 (591)
Q Consensus 353 d~~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~-~~~~~~~~n~L~~~le----~g~v~lI 427 (591)
+.+.++ .+|.|+.+..++.+|+.+++..++||||||+|.|.+.+..+.++ .+....+.+.|+..|+ ...+++|
T Consensus 543 ~~~~l~--s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi 620 (806)
T 3cf2_A 543 KGPELL--TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFII 620 (806)
T ss_dssp CHHHHH--TTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEE
T ss_pred ccchhh--ccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEE
Confidence 999988 45889999999999999998899999999999998765422111 1223345666666554 4578999
Q ss_pred ecCChhHHHhhhcccHHHHc--cCc-ceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcH-HHHHHHHHHhHHhhhcCCCc
Q 007723 428 ASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTL-EAINAAVHLSARYISDRYLP 503 (591)
Q Consensus 428 ~att~~e~~~~~~~d~aL~~--Rf~-~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~-~al~~l~~~s~r~i~~~~lp 503 (591)
+|||.. ..+|++|+| ||+ .|+|+.|+.+++.+||+.+..+. .+.+ -.++.+++.+.+|-..
T Consensus 621 ~aTN~p-----~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~------~~~~~~dl~~la~~t~g~SGa---- 685 (806)
T 3cf2_A 621 GATNRP-----DIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKS------PVAKDVDLEFLAKMTNGFSGA---- 685 (806)
T ss_dssp CC-CCS-----SSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--------CCC--------------------
T ss_pred EeCCCc-----hhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCC------CCCCCCCHHHHHHhCCCCCHH----
Confidence 999985 468999999 998 59999999999999997654422 2222 2367777777776432
Q ss_pred HHHHHHHHHHhh
Q 007723 504 DKAIDLVDEAGS 515 (591)
Q Consensus 504 ~~ai~lld~a~a 515 (591)
..-.++.+|+.
T Consensus 686 -di~~l~~~A~~ 696 (806)
T 3cf2_A 686 -DLTEICQRACK 696 (806)
T ss_dssp -CHHHHHHHHHH
T ss_pred -HHHHHHHHHHH
Confidence 23445555543
No 44
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.76 E-value=2.6e-17 Score=164.62 Aligned_cols=204 Identities=19% Similarity=0.237 Sum_probs=137.0
Q ss_pred CCCCccCCcHHHHHHHHHHHHh------------cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeeh
Q 007723 287 ELIDPVIGRETEIQRIIQILCR------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (591)
Q Consensus 287 ~~~~~vvG~~~~i~~l~~~L~~------------~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~ 354 (591)
-.|++++|.++.++.+.+++.. ...++++|+||||||||++|+++++.+ +.+++.++.
T Consensus 3 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~----------~~~~~~~~~ 72 (262)
T 2qz4_A 3 VSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA----------QVPFLAMAG 72 (262)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH----------TCCEEEEET
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCEEEech
Confidence 4689999999988888765432 234678999999999999999999987 566788887
Q ss_pred hhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCC--CCccHHHHHhhccccc----CCcEEEEe
Q 007723 355 GLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGN--KGTGLDISNLLKPSLG----RGELQCIA 428 (591)
Q Consensus 355 ~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~--~~~~~~~~n~L~~~le----~g~v~lI~ 428 (591)
..+.. .+.+.....++.++..+....+.||||||+|.+.......... ........+.|+..+. ...+++|+
T Consensus 73 ~~~~~--~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~ 150 (262)
T 2qz4_A 73 AEFVE--VIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLA 150 (262)
T ss_dssp TTTSS--SSTTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEE
T ss_pred HHHHh--hccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEe
Confidence 77652 3456677778888888877778999999999996543211000 0001122233333332 35688999
Q ss_pred cCChhHHHhhhcccHHHHc--cCc-ceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHH-HHHHHHHhHHhhhcCCCcH
Q 007723 429 STTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEA-INAAVHLSARYISDRYLPD 504 (591)
Q Consensus 429 att~~e~~~~~~~d~aL~~--Rf~-~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~a-l~~l~~~s~r~i~~~~lp~ 504 (591)
+|+... .+++++.+ ||. .+.++.|+.+++.++++.++..+ ++..+++. ...++..+.+|. +.
T Consensus 151 ~tn~~~-----~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~----~~~~~~~~~~~~l~~~~~g~~-----~~ 216 (262)
T 2qz4_A 151 STNRAD-----ILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSL----KLTQSSTFYSQRLAELTPGFS-----GA 216 (262)
T ss_dssp EESCGG-----GGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHT----TCCBTHHHHHHHHHHTCTTCC-----HH
T ss_pred cCCChh-----hcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhC----CCCcchhhHHHHHHHHCCCCC-----HH
Confidence 988753 46789998 996 68999999999999998777654 66666553 466666654442 33
Q ss_pred HHHHHHHHHhhH
Q 007723 505 KAIDLVDEAGSR 516 (591)
Q Consensus 505 ~ai~lld~a~a~ 516 (591)
....++++|+..
T Consensus 217 ~l~~l~~~a~~~ 228 (262)
T 2qz4_A 217 DIANICNEAALH 228 (262)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHHH
Confidence 456677777643
No 45
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.75 E-value=3.1e-18 Score=179.32 Aligned_cols=204 Identities=12% Similarity=0.151 Sum_probs=144.5
Q ss_pred hcccccccCCCCccCCcHHHHHHHHHHH-HhcCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCcc-cc-----------
Q 007723 279 DLTARASEELIDPVIGRETEIQRIIQIL-CRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVF-LL----------- 345 (591)
Q Consensus 279 ~l~~~~r~~~~~~vvG~~~~i~~l~~~L-~~~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~-~~----------- 345 (591)
+|+++|||.+|++++|++..++.+...+ .....++++|+||+|+||||+++.+++.+.+...... +.
T Consensus 3 ~w~~kyrP~~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~ 82 (354)
T 1sxj_E 3 LWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRK 82 (354)
T ss_dssp -CTTTTCCCSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC---------------
T ss_pred cchhccCCCCHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccccc
Confidence 6999999999999999999999999988 6666667999999999999999999997643221000 00
Q ss_pred -------CceEEEeehhhhhccccccchHHHHHHHHHHHHH--------------hcCCeEEEEcCcchhhcCCCCCCCC
Q 007723 346 -------SKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ--------------KSGDVILFIDEVHTLIGSGTVGRGN 404 (591)
Q Consensus 346 -------~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~--------------~~~~~ILfIDEi~~L~~~~~~~~~~ 404 (591)
...++.++.... +. .. ...++..++.+. ..++.||||||++.|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~--~~---~~-~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L---------- 146 (354)
T 1sxj_E 83 LELNVVSSPYHLEITPSDM--GN---ND-RIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSL---------- 146 (354)
T ss_dssp ---CCEECSSEEEECCC---------CC-HHHHHHHHHHHTTTTC------------CCEEEEEECTTSS----------
T ss_pred ceeeeecccceEEecHhhc--CC---cc-hHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCcccc----------
Confidence 011222221110 10 01 012334444332 125679999999998
Q ss_pred CCccHHHHHhhcccccC--CcEEEEecCChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHhhcCCCCc
Q 007723 405 KGTGLDISNLLKPSLGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFT 482 (591)
Q Consensus 405 ~~~~~~~~n~L~~~le~--g~v~lI~att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~ 482 (591)
....++.|+..++. .+..+|.+|+... .+.+++.+||..+.+.+|+.+++.++|..++.+. ++.++
T Consensus 147 ---~~~~~~~L~~~le~~~~~~~~Il~t~~~~-----~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~ 214 (354)
T 1sxj_E 147 ---TKDAQAALRRTMEKYSKNIRLIMVCDSMS-----PIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNE----RIQLE 214 (354)
T ss_dssp ---CHHHHHHHHHHHHHSTTTEEEEEEESCSC-----SSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHH----TCEEC
T ss_pred ---CHHHHHHHHHHHHhhcCCCEEEEEeCCHH-----HHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHc----CCCCC
Confidence 55667777777752 3566666666532 4678999999999999999999999998887655 88899
Q ss_pred -HHHHHHHHHHhHHhhhcCCCcHHHHHHHHHHhhH
Q 007723 483 -LEAINAAVHLSARYISDRYLPDKAIDLVDEAGSR 516 (591)
Q Consensus 483 -~~al~~l~~~s~r~i~~~~lp~~ai~lld~a~a~ 516 (591)
+++++.+++.+.+.+ ++++.+++.+...
T Consensus 215 ~~~~l~~i~~~~~G~~------r~a~~~l~~~~~~ 243 (354)
T 1sxj_E 215 TKDILKRIAQASNGNL------RVSLLMLESMALN 243 (354)
T ss_dssp CSHHHHHHHHHHTTCH------HHHHHHHTHHHHT
T ss_pred cHHHHHHHHHHcCCCH------HHHHHHHHHHHHh
Confidence 999999999987664 4589999887753
No 46
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.75 E-value=6.1e-18 Score=173.72 Aligned_cols=207 Identities=18% Similarity=0.258 Sum_probs=144.0
Q ss_pred cccCCCCccCCcHHHHHHHHHHHHh-------------cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEE
Q 007723 284 ASEELIDPVIGRETEIQRIIQILCR-------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIM 350 (591)
Q Consensus 284 ~r~~~~~~vvG~~~~i~~l~~~L~~-------------~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~ 350 (591)
..+-+|++++|.++.++.|.+.+.. ....+++|+||||||||++|+++|..+ +..++
T Consensus 9 ~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~----------~~~~i 78 (301)
T 3cf0_A 9 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFI 78 (301)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT----------TCEEE
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh----------CCCEE
Confidence 3456789999999999998887653 234678999999999999999999987 56788
Q ss_pred EeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCC-CCCccHHHHHhhccccc----CCcEE
Q 007723 351 SLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRG-NKGTGLDISNLLKPSLG----RGELQ 425 (591)
Q Consensus 351 ~ld~~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~-~~~~~~~~~n~L~~~le----~g~v~ 425 (591)
.++...+.. .+.|+.+..++.+|..+....++||||||+|.+........+ ..+....+++.|+..++ ...++
T Consensus 79 ~v~~~~l~~--~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~ 156 (301)
T 3cf0_A 79 SIKGPELLT--MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVF 156 (301)
T ss_dssp EECHHHHHH--HHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEE
T ss_pred EEEhHHHHh--hhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEE
Confidence 888877653 234555566888888888778899999999999754221100 01112334555555443 45799
Q ss_pred EEecCChhHHHhhhcccHHHHc--cCc-ceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhhhcCCC
Q 007723 426 CIASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYL 502 (591)
Q Consensus 426 lI~att~~e~~~~~~~d~aL~~--Rf~-~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i~~~~l 502 (591)
+|++||..+ .+|+++.+ ||. .+.++.|+.+++.+|++.++... ++. .+..++.++..+.+|-
T Consensus 157 vi~atn~~~-----~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~----~~~-~~~~~~~la~~~~g~s----- 221 (301)
T 3cf0_A 157 IIGATNRPD-----IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKS----PVA-KDVDLEFLAKMTNGFS----- 221 (301)
T ss_dssp EEEEESCGG-----GSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS----CBC-SSCCHHHHHHTCSSCC-----
T ss_pred EEEecCCcc-----ccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccC----CCC-ccchHHHHHHHcCCCC-----
Confidence 999998863 57899998 997 69999999999999987666543 221 1112455555554442
Q ss_pred cHHHHHHHHHHhhHh
Q 007723 503 PDKAIDLVDEAGSRA 517 (591)
Q Consensus 503 p~~ai~lld~a~a~~ 517 (591)
+.....++++|+..+
T Consensus 222 g~dl~~l~~~a~~~a 236 (301)
T 3cf0_A 222 GADLTEICQRACKLA 236 (301)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 234556677776543
No 47
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.74 E-value=2.8e-17 Score=164.50 Aligned_cols=211 Identities=19% Similarity=0.265 Sum_probs=142.6
Q ss_pred cccccccCCCCccCCcHHHHHHHHHHHHh------------cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCc
Q 007723 280 LTARASEELIDPVIGRETEIQRIIQILCR------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSK 347 (591)
Q Consensus 280 l~~~~r~~~~~~vvG~~~~i~~l~~~L~~------------~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~ 347 (591)
|+++..+..|++++|.++.++.+.+++.. ....+++|+||||||||+++++++..+ +.
T Consensus 2 ~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~----------~~ 71 (257)
T 1lv7_A 2 LTEDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA----------KV 71 (257)
T ss_dssp EEECSSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH----------TC
T ss_pred CCccCCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc----------CC
Confidence 45667788999999999988877665432 124578999999999999999999987 34
Q ss_pred eEEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCC-CCccHHHHHhhccccc----CC
Q 007723 348 RIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGN-KGTGLDISNLLKPSLG----RG 422 (591)
Q Consensus 348 ~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~-~~~~~~~~n~L~~~le----~g 422 (591)
+++.++...+.. .+.|..+..++.++..+....+.++||||+|.+......+-+. ........+.++..++ ..
T Consensus 72 ~~~~i~~~~~~~--~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 149 (257)
T 1lv7_A 72 PFFTISGSDFVE--MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNE 149 (257)
T ss_dssp CEEEECSCSSTT--SCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSS
T ss_pred CEEEEeHHHHHH--HhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCC
Confidence 567777665542 2345556778888888876677899999999996543321110 0111233444443332 45
Q ss_pred cEEEEecCChhHHHhhhcccHHHHc--cCc-ceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHH-HHHHHHHhHHhhh
Q 007723 423 ELQCIASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEA-INAAVHLSARYIS 498 (591)
Q Consensus 423 ~v~lI~att~~e~~~~~~~d~aL~~--Rf~-~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~a-l~~l~~~s~r~i~ 498 (591)
.+++|++|+..+ .+++++.+ ||. .+.+..|+.+++.+|++.+..+ +.+.+++ +..++..+.+|
T Consensus 150 ~~~vI~~tn~~~-----~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~------~~l~~~~~~~~la~~~~G~-- 216 (257)
T 1lv7_A 150 GIIVIAATNRPD-----VLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRR------VPLAPDIDAAIIARGTPGF-- 216 (257)
T ss_dssp CEEEEEEESCTT-----TSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTT------SCBCTTCCHHHHHHTCTTC--
T ss_pred CEEEEEeeCCch-----hCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhc------CCCCccccHHHHHHHcCCC--
Confidence 688999988853 57788988 897 5899999999999988665442 2333333 44455444332
Q ss_pred cCCCcHHHHHHHHHHhhHhh
Q 007723 499 DRYLPDKAIDLVDEAGSRAH 518 (591)
Q Consensus 499 ~~~lp~~ai~lld~a~a~~~ 518 (591)
.+.....++.+|+..+.
T Consensus 217 ---~~~dl~~l~~~a~~~a~ 233 (257)
T 1lv7_A 217 ---SGADLANLVNEAALFAA 233 (257)
T ss_dssp ---CHHHHHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHHHHH
Confidence 34456667777765443
No 48
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.74 E-value=2.3e-17 Score=161.26 Aligned_cols=202 Identities=18% Similarity=0.174 Sum_probs=145.4
Q ss_pred hhcccccccCCCCccCCcHHHHHHHHHHHHhcCCC-CCeEecCCCCcHHHHHHHHHHHHHhCCCCccc------------
Q 007723 278 VDLTARASEELIDPVIGRETEIQRIIQILCRRTKN-NPILLGESGVGKTAIAEGLAIRIVQAEVPVFL------------ 344 (591)
Q Consensus 278 ~~l~~~~r~~~~~~vvG~~~~i~~l~~~L~~~~~~-~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~------------ 344 (591)
.+|.++++|..|++++|++.+++.+...+.....+ .++|+||+|+|||++++.+++.+.........
T Consensus 11 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (250)
T 1njg_A 11 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIE 90 (250)
T ss_dssp CCHHHHTCCCSGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHH
T ss_pred HHHhhccCCccHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHh
Confidence 45788999999999999999999999998875543 57899999999999999999988542211000
Q ss_pred --cCceEEEeehhhhhccccccchHHHHHHHHHHHHH----hcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhccc
Q 007723 345 --LSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPS 418 (591)
Q Consensus 345 --~~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~----~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~ 418 (591)
....++.++... ......++.++..+. ..++.+|||||+|.+ ..+.++.|+..
T Consensus 91 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l-------------~~~~~~~l~~~ 149 (250)
T 1njg_A 91 QGRFVDLIEIDAAS--------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML-------------SRHSFNALLKT 149 (250)
T ss_dssp TTCCSSEEEEETTC--------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGS-------------CHHHHHHHHHH
T ss_pred ccCCcceEEecCcc--------cccHHHHHHHHHHhhhchhcCCceEEEEECcccc-------------cHHHHHHHHHH
Confidence 001223222111 111223444444332 134689999999998 45566777777
Q ss_pred ccC--CcEEEEecCChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHh
Q 007723 419 LGR--GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARY 496 (591)
Q Consensus 419 le~--g~v~lI~att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~ 496 (591)
++. ..+.+|++|+... .+++++.+||..+.+++++.++..+++...... .++.+++++++.+++.+.++
T Consensus 150 l~~~~~~~~~i~~t~~~~-----~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~----~~~~~~~~~~~~l~~~~~G~ 220 (250)
T 1njg_A 150 LEEPPEHVKFLLATTDPQ-----KLPVTILSRCLQFHLKALDVEQIRHQLEHILNE----EHIAHEPRALQLLARAAEGS 220 (250)
T ss_dssp HHSCCTTEEEEEEESCGG-----GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH----TTCCBCHHHHHHHHHHHTTC
T ss_pred HhcCCCceEEEEEeCChH-----hCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHcCCC
Confidence 654 4677787776642 467899999989999999999999998776654 37889999999999988654
Q ss_pred hhcCCCcHHHHHHHHHHhh
Q 007723 497 ISDRYLPDKAIDLVDEAGS 515 (591)
Q Consensus 497 i~~~~lp~~ai~lld~a~a 515 (591)
|..++.+++.++.
T Consensus 221 ------~~~~~~~~~~~~~ 233 (250)
T 1njg_A 221 ------LRDALSLTDQAIA 233 (250)
T ss_dssp ------HHHHHHHHHHHHT
T ss_pred ------HHHHHHHHHHHHh
Confidence 6668888888864
No 49
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.73 E-value=3.5e-17 Score=169.99 Aligned_cols=217 Identities=16% Similarity=0.200 Sum_probs=153.4
Q ss_pred HHhhchhcccccccCCCCccCCcHHHHHHHHHHHHhcCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEe
Q 007723 273 LEQFCVDLTARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSL 352 (591)
Q Consensus 273 l~~~~~~l~~~~r~~~~~~vvG~~~~i~~l~~~L~~~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~l 352 (591)
...|..++.+++++..++.++|+++.++.+...+.. ..+++|+||||||||++|+++++.+ +..++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~l~~--~~~vll~G~pGtGKT~la~~la~~~----------~~~~~~i 77 (331)
T 2r44_A 10 KSLYYRNKIKEVIDEVGKVVVGQKYMINRLLIGICT--GGHILLEGVPGLAKTLSVNTLAKTM----------DLDFHRI 77 (331)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCSCHHHHHHHHHHHHH--TCCEEEESCCCHHHHHHHHHHHHHT----------TCCEEEE
T ss_pred hhHHHHHHHHHHHHHhccceeCcHHHHHHHHHHHHc--CCeEEEECCCCCcHHHHHHHHHHHh----------CCCeEEE
Confidence 334667889999999999999999999998887765 4689999999999999999999987 2334444
Q ss_pred ehh------hhhcccc---ccchHHHHHHHHHHHHHhcC---CeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhccccc
Q 007723 353 DMG------LLMAGAK---ERGELEARVTTLISEIQKSG---DVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG 420 (591)
Q Consensus 353 d~~------~l~~g~~---~~g~~~~~i~~i~~~~~~~~---~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le 420 (591)
++. .++.... ..|.+. . ..+ ..||||||++.+ ....++.|+..++
T Consensus 78 ~~~~~~~~~~l~g~~~~~~~~~~~~---------~-~~g~l~~~vl~iDEi~~~-------------~~~~~~~Ll~~l~ 134 (331)
T 2r44_A 78 QFTPDLLPSDLIGTMIYNQHKGNFE---------V-KKGPVFSNFILADEVNRS-------------PAKVQSALLECMQ 134 (331)
T ss_dssp ECCTTCCHHHHHEEEEEETTTTEEE---------E-EECTTCSSEEEEETGGGS-------------CHHHHHHHHHHHH
T ss_pred ecCCCCChhhcCCceeecCCCCceE---------e-ccCcccccEEEEEccccC-------------CHHHHHHHHHHHh
Confidence 431 1111000 001100 0 011 369999999998 5667777777765
Q ss_pred CC-------------cEEEEecCChhHHHhhhcccHHHHccCc-ceeecCCCHHHHHHHHHHHHHHH-------------
Q 007723 421 RG-------------ELQCIASTTQDEHRTQFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKY------------- 473 (591)
Q Consensus 421 ~g-------------~v~lI~att~~e~~~~~~~d~aL~~Rf~-~i~i~~p~~~e~~~iL~~~~~~~------------- 473 (591)
.+ .+++|+++|+.++.....++++|.+||. .+.+..|+.++..+||+......
T Consensus 135 ~~~~~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~ 214 (331)
T 2r44_A 135 EKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKND 214 (331)
T ss_dssp HSEEEETTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHH
T ss_pred cCceeeCCEEEECCCCEEEEEecCCCcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHH
Confidence 33 4678888887654334458899999998 49999999999999997754321
Q ss_pred -----HhhcCCCCcHHHHHHHHHHhHHhhhc--------------CCCcHHHHHHHHHHhhHhhhhhhcc
Q 007723 474 -----EAHHNCKFTLEAINAAVHLSARYISD--------------RYLPDKAIDLVDEAGSRAHIELFKR 524 (591)
Q Consensus 474 -----~~~~~i~i~~~al~~l~~~s~r~i~~--------------~~lp~~ai~lld~a~a~~~~~~~~~ 524 (591)
....++.++++++++++.++...-.. ...++.++.++..+.+.+.+.+...
T Consensus 215 i~~~~~~~~~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~ 284 (331)
T 2r44_A 215 VLEIRNEINKVTISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDY 284 (331)
T ss_dssp HHHHHHHHHTCBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSB
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCC
Confidence 11247889999999998887543222 2247788888888887777766543
No 50
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.73 E-value=1.5e-17 Score=171.84 Aligned_cols=189 Identities=21% Similarity=0.190 Sum_probs=138.6
Q ss_pred ccccccCCCCccCCcHHHHHHHHHHHHh-----cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehh
Q 007723 281 TARASEELIDPVIGRETEIQRIIQILCR-----RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMG 355 (591)
Q Consensus 281 ~~~~r~~~~~~vvG~~~~i~~l~~~L~~-----~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~ 355 (591)
.++++|..|++++|++..++.+...+.. ....+++|+||||||||++|+++++.+ +..++.++..
T Consensus 3 ~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~----------~~~~~~~~~~ 72 (324)
T 1hqc_A 3 DLALRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL----------GVNLRVTSGP 72 (324)
T ss_dssp --CCCCCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH----------TCCEEEECTT
T ss_pred ccccCcccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEecc
Confidence 3578999999999999999988887753 245789999999999999999999987 3455665544
Q ss_pred hhhccccccchHHHHHHHHHHHHHh--cCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCC-----------
Q 007723 356 LLMAGAKERGELEARVTTLISEIQK--SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG----------- 422 (591)
Q Consensus 356 ~l~~g~~~~g~~~~~i~~i~~~~~~--~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g----------- 422 (591)
.+. . ...++..+.. ..+++|||||+|.+ ....++.|+..++.+
T Consensus 73 ~~~----~-------~~~l~~~l~~~~~~~~~l~lDEi~~l-------------~~~~~~~L~~~l~~~~~~~v~~~~~~ 128 (324)
T 1hqc_A 73 AIE----K-------PGDLAAILANSLEEGDILFIDEIHRL-------------SRQAEEHLYPAMEDFVMDIVIGQGPA 128 (324)
T ss_dssp TCC----S-------HHHHHHHHTTTCCTTCEEEETTTTSC-------------CHHHHHHHHHHHHHSEEEECCSSSSS
T ss_pred ccC----C-------hHHHHHHHHHhccCCCEEEEECCccc-------------ccchHHHHHHHHHhhhhHHhcccccc
Confidence 321 1 1122222222 46789999999999 445566666655432
Q ss_pred ---------cEEEEecCChhHHHhhhcccHHHHccCc-ceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHH
Q 007723 423 ---------ELQCIASTTQDEHRTQFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHL 492 (591)
Q Consensus 423 ---------~v~lI~att~~e~~~~~~~d~aL~~Rf~-~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~ 492 (591)
.+++|++|+... .++++|.+||. .+.+..|+.+++..++...... .++.+++++++.++.+
T Consensus 129 ~~~~~~~~~~~~~i~~t~~~~-----~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~----~~~~~~~~~~~~l~~~ 199 (324)
T 1hqc_A 129 ARTIRLELPRFTLIGATTRPG-----LITAPLLSRFGIVEHLEYYTPEELAQGVMRDARL----LGVRITEEAALEIGRR 199 (324)
T ss_dssp CCCEEEECCCCEEEEEESCCS-----SCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHT----TTCCCCHHHHHHHHHH
T ss_pred ccccccCCCCEEEEEeCCCcc-----cCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHH
Confidence 367888888753 45678999995 7999999999988888766554 3788999999999988
Q ss_pred hHHhhhcCCCcHHHHHHHHHHhhHhh
Q 007723 493 SARYISDRYLPDKAIDLVDEAGSRAH 518 (591)
Q Consensus 493 s~r~i~~~~lp~~ai~lld~a~a~~~ 518 (591)
+.++ |..+..+++.+...+.
T Consensus 200 ~~G~------~r~l~~~l~~~~~~a~ 219 (324)
T 1hqc_A 200 SRGT------MRVAKRLFRRVRDFAQ 219 (324)
T ss_dssp SCSC------HHHHHHHHHHHTTTST
T ss_pred ccCC------HHHHHHHHHHHHHHHH
Confidence 6544 5567788877765443
No 51
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.72 E-value=7.1e-17 Score=174.91 Aligned_cols=204 Identities=21% Similarity=0.274 Sum_probs=143.5
Q ss_pred CCCCccCCcHHHHHHHHHHHHh------------cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeeh
Q 007723 287 ELIDPVIGRETEIQRIIQILCR------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (591)
Q Consensus 287 ~~~~~vvG~~~~i~~l~~~L~~------------~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~ 354 (591)
.+|++++|.++.++.+.+++.. +.+.+++|+||||||||++|++++..+ +.+++.++.
T Consensus 13 ~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~----------~~~f~~is~ 82 (476)
T 2ce7_A 13 VTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA----------NVPFFHISG 82 (476)
T ss_dssp CCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH----------TCCEEEEEG
T ss_pred CCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc----------CCCeeeCCH
Confidence 4789999999988887776532 123578999999999999999999987 566788888
Q ss_pred hhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCC-CCCCccHHHHHhhccccc----CCcEEEEec
Q 007723 355 GLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGR-GNKGTGLDISNLLKPSLG----RGELQCIAS 429 (591)
Q Consensus 355 ~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~-~~~~~~~~~~n~L~~~le----~g~v~lI~a 429 (591)
+.+.. .+.|....+++.+|..+....++||||||+|.+......+. +........++.|+..++ ...+++|++
T Consensus 83 ~~~~~--~~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaa 160 (476)
T 2ce7_A 83 SDFVE--LFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAA 160 (476)
T ss_dssp GGTTT--CCTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEE
T ss_pred HHHHH--HHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEe
Confidence 77763 35666778889999998888899999999999965432110 001112235566655553 356899999
Q ss_pred CChhHHHhhhcccHHHHc--cCc-ceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHH-HHHHHHHhHHhhhcCCCcHH
Q 007723 430 TTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEA-INAAVHLSARYISDRYLPDK 505 (591)
Q Consensus 430 tt~~e~~~~~~~d~aL~~--Rf~-~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~a-l~~l~~~s~r~i~~~~lp~~ 505 (591)
|+..+ .+|+++.+ ||+ .|.++.|+.+++.+|++.+... ..+.+++ +..+++.+.+|. +..
T Consensus 161 Tn~~~-----~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~------~~l~~~v~l~~la~~t~G~s-----gad 224 (476)
T 2ce7_A 161 TNRPD-----ILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRN------KPLAEDVNLEIIAKRTPGFV-----GAD 224 (476)
T ss_dssp ESCGG-----GSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTT------SCBCTTCCHHHHHHTCTTCC-----HHH
T ss_pred cCChh-----hhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHh------CCCcchhhHHHHHHhcCCCc-----HHH
Confidence 98864 47888887 998 6899999999999998765543 2333332 566666655543 234
Q ss_pred HHHHHHHHhhHhh
Q 007723 506 AIDLVDEAGSRAH 518 (591)
Q Consensus 506 ai~lld~a~a~~~ 518 (591)
...++.+|+..+.
T Consensus 225 L~~lv~~Aal~A~ 237 (476)
T 2ce7_A 225 LENLVNEAALLAA 237 (476)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5667777765544
No 52
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.71 E-value=2.3e-16 Score=171.34 Aligned_cols=115 Identities=19% Similarity=0.177 Sum_probs=88.5
Q ss_pred eEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccC--CcEEEEec---------CChhHHHhhhcccHHHHccCcce
Q 007723 384 VILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--GELQCIAS---------TTQDEHRTQFEKDKALARRFQPV 452 (591)
Q Consensus 384 ~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~--g~v~lI~a---------tt~~e~~~~~~~d~aL~~Rf~~i 452 (591)
.|+||||+|.| +.+++|.|+..++. ..++++++ ++ .+.....+++++++||..+
T Consensus 297 ~VliIDEa~~l-------------~~~a~~aLlk~lEe~~~~~~il~tn~~~~~i~~~~--~~~~~~~l~~~i~sR~~~~ 361 (456)
T 2c9o_A 297 GVLFVDEVHML-------------DIECFTYLHRALESSIAPIVIFASNRGNCVIRGTE--DITSPHGIPLDLLDRVMII 361 (456)
T ss_dssp CEEEEESGGGC-------------BHHHHHHHHHHTTSTTCCEEEEEECCSEEECBTTS--SCEEETTCCHHHHTTEEEE
T ss_pred eEEEEechhhc-------------CHHHHHHHHHHhhccCCCEEEEecCCccccccccc--cccccccCChhHHhhccee
Confidence 58888998888 67889999999984 24433344 33 0111345789999999999
Q ss_pred eecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHh-HHhhhcCCCcHHHHHHHHHHhhHhhhhhhc
Q 007723 453 LISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLS-ARYISDRYLPDKAIDLVDEAGSRAHIELFK 523 (591)
Q Consensus 453 ~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s-~r~i~~~~lp~~ai~lld~a~a~~~~~~~~ 523 (591)
.+.+|+.+++.++|+..+... ++.++++++..++.++ .+ -|+.|+.+++.|...+...+..
T Consensus 362 ~~~~~~~~e~~~iL~~~~~~~----~~~~~~~~~~~i~~~a~~g------~~r~a~~ll~~a~~~A~~~~~~ 423 (456)
T 2c9o_A 362 RTMLYTPQEMKQIIKIRAQTE----GINISEEALNHLGEIGTKT------TLRYSVQLLTPANLLAKINGKD 423 (456)
T ss_dssp ECCCCCHHHHHHHHHHHHHHH----TCCBCHHHHHHHHHHHHHS------CHHHHHHTHHHHHHHHHHTTCS
T ss_pred eCCCCCHHHHHHHHHHHHHHh----CCCCCHHHHHHHHHHccCC------CHHHHHHHHHHHHHHHhhcCCC
Confidence 999999999999998877654 7889999999999988 53 3777999999997666555443
No 53
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.71 E-value=2.3e-17 Score=181.86 Aligned_cols=199 Identities=16% Similarity=0.192 Sum_probs=139.9
Q ss_pred hchhcccccccCCCCccCCcHHHHHHHHHHHHhc-----------------CCCCCeEecCCCCcHHHHHHHHHHHHHhC
Q 007723 276 FCVDLTARASEELIDPVIGRETEIQRIIQILCRR-----------------TKNNPILLGESGVGKTAIAEGLAIRIVQA 338 (591)
Q Consensus 276 ~~~~l~~~~r~~~~~~vvG~~~~i~~l~~~L~~~-----------------~~~~ilL~GppGvGKT~la~~lA~~l~~~ 338 (591)
-...|+++|+|.+|++++|++..++.+..++... ..++++|+||||||||++|+++++.+
T Consensus 25 ~~~lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l--- 101 (516)
T 1sxj_A 25 SDKLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL--- 101 (516)
T ss_dssp -CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT---
T ss_pred cCCCcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc---
Confidence 3467899999999999999999999999988651 24678999999999999999999987
Q ss_pred CCCccccCceEEEeehhhhhccccccchHHHH---------HHHHHHHH-----HhcCCeEEEEcCcchhhcCCCCCCCC
Q 007723 339 EVPVFLLSKRIMSLDMGLLMAGAKERGELEAR---------VTTLISEI-----QKSGDVILFIDEVHTLIGSGTVGRGN 404 (591)
Q Consensus 339 ~~p~~~~~~~~~~ld~~~l~~g~~~~g~~~~~---------i~~i~~~~-----~~~~~~ILfIDEi~~L~~~~~~~~~~ 404 (591)
+..+++++.+.+.... ..... +..++..+ ....+.||||||+|.+...
T Consensus 102 -------~~~~i~in~s~~~~~~----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~------- 163 (516)
T 1sxj_A 102 -------GYDILEQNASDVRSKT----LLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGG------- 163 (516)
T ss_dssp -------TCEEEEECTTSCCCHH----HHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTT-------
T ss_pred -------CCCEEEEeCCCcchHH----HHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchh-------
Confidence 5677888765432110 00000 01111111 1245789999999999432
Q ss_pred CCccHHHHHhhcccccCC--cEEEEecCChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHhhcCCCCc
Q 007723 405 KGTGLDISNLLKPSLGRG--ELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFT 482 (591)
Q Consensus 405 ~~~~~~~~n~L~~~le~g--~v~lI~att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~ 482 (591)
.....+.|...++.. .+++|++++... .-+++.+||..+.|.+|+.+++.++|..++.+. ++.++
T Consensus 164 ---~~~~l~~L~~~l~~~~~~iIli~~~~~~~------~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~----~~~i~ 230 (516)
T 1sxj_A 164 ---DRGGVGQLAQFCRKTSTPLILICNERNLP------KMRPFDRVCLDIQFRRPDANSIKSRLMTIAIRE----KFKLD 230 (516)
T ss_dssp ---STTHHHHHHHHHHHCSSCEEEEESCTTSS------TTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHH----TCCCC
T ss_pred ---hHHHHHHHHHHHHhcCCCEEEEEcCCCCc------cchhhHhceEEEEeCCCCHHHHHHHHHHHHHHc----CCCCC
Confidence 122345565655543 355555443321 124578889899999999999999998877655 78899
Q ss_pred HHHHHHHHHHhHHhhhcCCCcHHHHHHHHHHh
Q 007723 483 LEAINAAVHLSARYISDRYLPDKAIDLVDEAG 514 (591)
Q Consensus 483 ~~al~~l~~~s~r~i~~~~lp~~ai~lld~a~ 514 (591)
+++++.+++.+.+.++ .++++|+.++
T Consensus 231 ~~~l~~la~~s~GdiR------~~i~~L~~~~ 256 (516)
T 1sxj_A 231 PNVIDRLIQTTRGDIR------QVINLLSTIS 256 (516)
T ss_dssp TTHHHHHHHHTTTCHH------HHHHHHTHHH
T ss_pred HHHHHHHHHHcCCcHH------HHHHHHHHHH
Confidence 9999999999876544 4788876654
No 54
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.71 E-value=1.1e-16 Score=163.76 Aligned_cols=215 Identities=21% Similarity=0.280 Sum_probs=141.8
Q ss_pred ccCCcHHHHHHHHHHHHh--------------cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhh
Q 007723 291 PVIGRETEIQRIIQILCR--------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGL 356 (591)
Q Consensus 291 ~vvG~~~~i~~l~~~L~~--------------~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~ 356 (591)
.++|+++.++.+...+.. ...++++|+||||||||++|+++++.+ +..++.++++.
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l----------~~~~~~i~~~~ 85 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA----------NAPFIKVEATK 85 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH----------TCCEEEEEGGG
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEcchh
Confidence 489999999999887764 346789999999999999999999988 45678888877
Q ss_pred hhccccccc-hHHHHHHHHHHHH----Hh-cCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCC--------
Q 007723 357 LMAGAKERG-ELEARVTTLISEI----QK-SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-------- 422 (591)
Q Consensus 357 l~~g~~~~g-~~~~~i~~i~~~~----~~-~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g-------- 422 (591)
+... .+.| +....++.++... .. ..+.||||||+|.+......+ +.......+++.|++.++.+
T Consensus 86 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~-~~~~~~~~~~~~Ll~~le~~~~~~~~~~ 163 (310)
T 1ofh_A 86 FTEV-GYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYS-GADVSREGVQRDLLPLVEGSTVSTKHGM 163 (310)
T ss_dssp GSSC-CSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCC-SSHHHHHHHHHHHHHHHHCCEEEETTEE
T ss_pred cccC-CccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCcccccc-ccchhHHHHHHHHHHHhcCCeEeccccc
Confidence 6531 1222 1222344444321 11 235799999999996543210 00011122467777777653
Q ss_pred ----cEEEEecCChhHHHhhhcccHHHHccCc-ceeecCCCHHHHHHHHH----HHHHHHH---hhcC--CCCcHHHHHH
Q 007723 423 ----ELQCIASTTQDEHRTQFEKDKALARRFQ-PVLISEPSQEDAVRILL----GLREKYE---AHHN--CKFTLEAINA 488 (591)
Q Consensus 423 ----~v~lI~att~~e~~~~~~~d~aL~~Rf~-~i~i~~p~~~e~~~iL~----~~~~~~~---~~~~--i~i~~~al~~ 488 (591)
.+++|++++.... ....++++|.+||. .|.+++|+.+++.+|++ .+...+. ...+ +.+++++++.
T Consensus 164 ~~~~~~~~i~~~~~~~~-~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 242 (310)
T 1ofh_A 164 VKTDHILFIASGAFQVA-RPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKK 242 (310)
T ss_dssp EECTTCEEEEEECCSSS-CGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHH
T ss_pred ccCCcEEEEEcCCcccC-CcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHH
Confidence 5788888632110 12357899999997 59999999999999998 3333332 1223 4799999999
Q ss_pred HHHHhHHhh--hcCCCcHHHHHHHHHHhhHhh
Q 007723 489 AVHLSARYI--SDRYLPDKAIDLVDEAGSRAH 518 (591)
Q Consensus 489 l~~~s~r~i--~~~~lp~~ai~lld~a~a~~~ 518 (591)
+++++.... ....-.+.+.++++.++..+.
T Consensus 243 l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~ 274 (310)
T 1ofh_A 243 IAEAAFRVNEKTENIGARRLHTVMERLMDKIS 274 (310)
T ss_dssp HHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHH
T ss_pred HHHHhhhhcccccccCcHHHHHHHHHHHHhhh
Confidence 999885421 112235678888888775443
No 55
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.69 E-value=2.6e-16 Score=160.91 Aligned_cols=222 Identities=15% Similarity=0.136 Sum_probs=130.0
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhccccccchHHHHHHHHHHHH----HhcCCeEE
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEI----QKSGDVIL 386 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~----~~~~~~IL 386 (591)
+.+++|+||||||||++|+++|+.+ +.+++.++++.+.. .+.|+.+..++.+|..+ +...++||
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l----------~~~~i~v~~~~l~~--~~~g~~~~~i~~~f~~a~~~~~~~~~~vl 103 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKM----------GINPIMMSAGELES--GNAGEPAKLIRQRYREAAEIIRKGNMCCL 103 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHH----------TCCCEEEEHHHHHC--C---HHHHHHHHHHHHHHHHHTTSSCCCE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEeHHHhhh--ccCchhHHHHHHHHHHHHHHHhcCCCeEE
Confidence 3467899999999999999999998 67788999988874 36688888888888877 34578999
Q ss_pred EEcCcchhhcCCCCCCCCCCccHHHHHhhccccc---------------CCcEEEEecCChhHHHhhhcccHHHHc--cC
Q 007723 387 FIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG---------------RGELQCIASTTQDEHRTQFEKDKALAR--RF 449 (591)
Q Consensus 387 fIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le---------------~g~v~lI~att~~e~~~~~~~d~aL~~--Rf 449 (591)
||||||.+.+..............+++.|+..++ ..++++|+|||..+ .++++|.| ||
T Consensus 104 ~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~-----~ld~al~R~~R~ 178 (293)
T 3t15_A 104 FINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFS-----TLYAPLIRDGRM 178 (293)
T ss_dssp EEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCC-----C--CHHHHHHHE
T ss_pred EEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcc-----cCCHHHhCCCCC
Confidence 9999999876322111111123356677776653 34688999998753 57888986 88
Q ss_pred cceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhhhcCC----------CcHHHHHHHHHHhhHh--
Q 007723 450 QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRY----------LPDKAIDLVDEAGSRA-- 517 (591)
Q Consensus 450 ~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i~~~~----------lp~~ai~lld~a~a~~-- 517 (591)
+.+. ..|+.+++.+|++.+.. ..+ ++. +.+..++.+|..... ..+.+.+++.+++...
T Consensus 179 d~~i-~~P~~~~r~~Il~~~~~----~~~--~~~---~~l~~~~~~~~~~~l~~~~~l~~~~~~~~i~~~~~~~g~~~~~ 248 (293)
T 3t15_A 179 EKFY-WAPTREDRIGVCTGIFR----TDN--VPA---EDVVKIVDNFPGQSIDFFGALRARVYDDEVRKWVSGTGIEKIG 248 (293)
T ss_dssp EEEE-ECCCHHHHHHHHHHHHG----GGC--CCH---HHHHHHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHTCSTTCH
T ss_pred ceeE-eCcCHHHHHHHHHHhcc----CCC--CCH---HHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 7432 36899999999975443 223 333 334444444432210 0111222222221100
Q ss_pred -h-hhhhccchhhhhhhhcCChHHHHHHHHHHhhcchHHHHhhchh
Q 007723 518 -H-IELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSRLKY 561 (591)
Q Consensus 518 -~-~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~d~~~a~~~~~ 561 (591)
. +.....+ ..+.......+++.......+..+|..+..++.+
T Consensus 249 ~~~~~~~~~~--~~~~~~~~~~~~l~~~g~~~~~eq~~~~~~~l~~ 292 (293)
T 3t15_A 249 DKLLNSFDGP--PTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLAD 292 (293)
T ss_dssp HHHTSCSSCS--CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCC--CCCCCccccHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 0 0000001 1122334456667777778889999988887654
No 56
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.68 E-value=1.3e-15 Score=158.63 Aligned_cols=195 Identities=18% Similarity=0.223 Sum_probs=135.2
Q ss_pred hcccccccCCCCccCCcHHHHHHHHHHHHhc-----CCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEee
Q 007723 279 DLTARASEELIDPVIGRETEIQRIIQILCRR-----TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (591)
Q Consensus 279 ~l~~~~r~~~~~~vvG~~~~i~~l~~~L~~~-----~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld 353 (591)
.|.+++++..|+.++|++..++.+...+... ...+++|+||||+||||+++.++..+ ++.+....
T Consensus 14 ~~~~~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l----------~~~~~~~s 83 (334)
T 1in4_A 14 SGVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL----------QTNIHVTS 83 (334)
T ss_dssp ---CTTSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH----------TCCEEEEE
T ss_pred HHHHHcCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh----------CCCEEEEe
Confidence 4588999999999999998888877766542 33678999999999999999999988 23333222
Q ss_pred hhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccC------------
Q 007723 354 MGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR------------ 421 (591)
Q Consensus 354 ~~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~------------ 421 (591)
...+. .+ ..+..++.. .....|+||||+|.+. ....+.|...++.
T Consensus 84 g~~~~-----~~---~~l~~~~~~--~~~~~v~~iDE~~~l~-------------~~~~e~L~~~~~~~~~~i~~~~~~~ 140 (334)
T 1in4_A 84 GPVLV-----KQ---GDMAAILTS--LERGDVLFIDEIHRLN-------------KAVEELLYSAIEDFQIDIMIGKGPS 140 (334)
T ss_dssp TTTCC-----SH---HHHHHHHHH--CCTTCEEEEETGGGCC-------------HHHHHHHHHHHHTSCCCC-------
T ss_pred chHhc-----CH---HHHHHHHHH--ccCCCEEEEcchhhcC-------------HHHHHHHHHHHHhcccceeeccCcc
Confidence 11111 11 112222221 1346799999999993 2334444433321
Q ss_pred --------CcEEEEecCChhHHHhhhcccHHHHccCc-ceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHH
Q 007723 422 --------GELQCIASTTQDEHRTQFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHL 492 (591)
Q Consensus 422 --------g~v~lI~att~~e~~~~~~~d~aL~~Rf~-~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~ 492 (591)
..+.+|++++.. ..+++++++||. .+.+.+++.+++.++|+..+..+ ++.++++++..+++.
T Consensus 141 ~~~i~~~l~~~~li~at~~~-----~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~----~~~~~~~~~~~ia~~ 211 (334)
T 1in4_A 141 AKSIRIDIQPFTLVGATTRS-----GLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLM----DVEIEDAAAEMIAKR 211 (334)
T ss_dssp --------CCCEEEEEESCG-----GGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHT----TCCBCHHHHHHHHHT
T ss_pred cccccccCCCeEEEEecCCc-----ccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHc----CCCcCHHHHHHHHHh
Confidence 135677777764 357899999997 47899999999999998876643 789999999999988
Q ss_pred hHHhhhcCCCcHHHHHHHHHHhhHhhhhh
Q 007723 493 SARYISDRYLPDKAIDLVDEAGSRAHIEL 521 (591)
Q Consensus 493 s~r~i~~~~lp~~ai~lld~a~a~~~~~~ 521 (591)
+.+. |+.++.+|+.+...+...+
T Consensus 212 ~~G~------~R~a~~ll~~~~~~a~~~~ 234 (334)
T 1in4_A 212 SRGT------PRIAIRLTKRVRDMLTVVK 234 (334)
T ss_dssp STTC------HHHHHHHHHHHHHHHHHHT
T ss_pred cCCC------hHHHHHHHHHHHHHHHHcC
Confidence 7544 5668899988766555443
No 57
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.67 E-value=2.6e-16 Score=161.75 Aligned_cols=214 Identities=9% Similarity=0.072 Sum_probs=143.2
Q ss_pred cCCcHHHHHHHHHHHHh----cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhh---------
Q 007723 292 VIGRETEIQRIIQILCR----RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM--------- 358 (591)
Q Consensus 292 vvG~~~~i~~l~~~L~~----~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~--------- 358 (591)
+.||++++..+...|.. ...++++|+||||||||++++.+++.+........+....++++++..+.
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I 101 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKI 101 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHH
Confidence 78999999998876554 56788999999999999999999999864321111223566777754321
Q ss_pred ----cccc-ccchHHHHHHHHHHHH--HhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhc-ccccCCcEEEEecC
Q 007723 359 ----AGAK-ERGELEARVTTLISEI--QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLK-PSLGRGELQCIAST 430 (591)
Q Consensus 359 ----~g~~-~~g~~~~~i~~i~~~~--~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~-~~le~g~v~lI~at 430 (591)
.|.. ..+.....+..+|..+ ......|+||||+|.|. .+.-+.+.+. +....+++.+|+.+
T Consensus 102 ~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~-----------~q~~L~~l~~~~~~~~s~~~vI~i~ 170 (318)
T 3te6_A 102 WFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL-----------SEKILQYFEKWISSKNSKLSIICVG 170 (318)
T ss_dssp HHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC-----------CTHHHHHHHHHHHCSSCCEEEEEEC
T ss_pred HHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh-----------cchHHHHHHhcccccCCcEEEEEEe
Confidence 1211 1233445566666654 23456899999999994 0222222221 11245678888777
Q ss_pred ChhHHHhhhcccHHHHccCc--ceeecCCCHHHHHHHHHHHHHHHHhh-------------------------------c
Q 007723 431 TQDEHRTQFEKDKALARRFQ--PVLISEPSQEDAVRILLGLREKYEAH-------------------------------H 477 (591)
Q Consensus 431 t~~e~~~~~~~d~aL~~Rf~--~i~i~~p~~~e~~~iL~~~~~~~~~~-------------------------------~ 477 (591)
+..++. ...+++++.+||. .|.|.+++.+++.+||+..+...... .
T Consensus 171 n~~d~~-~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (318)
T 3te6_A 171 GHNVTI-REQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVI 249 (318)
T ss_dssp CSSCCC-HHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEE
T ss_pred cCcccc-hhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccc
Confidence 654321 1235677889995 59999999999999999888765321 1
Q ss_pred CCCCcHHHHHHHHHHhHHhhhcCCCcHHHHHHHHHHhhHhhhh
Q 007723 478 NCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIE 520 (591)
Q Consensus 478 ~i~i~~~al~~l~~~s~r~i~~~~lp~~ai~lld~a~a~~~~~ 520 (591)
.+.+++++++.+++.....-.+ -++|++++..|+..+...
T Consensus 250 ~~~i~~~ai~~~A~~vA~~~GD---~R~Al~ilr~A~~~ae~e 289 (318)
T 3te6_A 250 NHKINNKITQLIAKNVANVSGS---TEKAFKICEAAVEISKKD 289 (318)
T ss_dssp CEECCHHHHHHHHHHHHHHHCS---HHHHHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHhhCCh---HHHHHHHHHHHHHHHHHH
Confidence 1258999999999975544444 457999999998665543
No 58
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.66 E-value=7.1e-16 Score=151.38 Aligned_cols=202 Identities=13% Similarity=0.107 Sum_probs=136.1
Q ss_pred hccccccc-CCCCccCCc---HHHHHHHHHHHHhcCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeeh
Q 007723 279 DLTARASE-ELIDPVIGR---ETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (591)
Q Consensus 279 ~l~~~~r~-~~~~~vvG~---~~~i~~l~~~L~~~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~ 354 (591)
++..++++ .+|++++|. +..++.+...+.....++++|+||||||||++++.+++.+... +..++.++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~-------~~~~~~~~~ 88 (242)
T 3bos_A 16 SLPVHLPDDETFTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL-------ERRSFYIPL 88 (242)
T ss_dssp EEECCCCTTCSTTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT-------TCCEEEEEG
T ss_pred CCCCCCCCCCChhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc-------CCeEEEEEH
Confidence 56667776 689999973 4677777777776677889999999999999999999988543 355677777
Q ss_pred hhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCCcEEEEecCChhH
Q 007723 355 GLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDE 434 (591)
Q Consensus 355 ~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g~v~lI~att~~e 434 (591)
..+..... ..+..+ ..+.+|||||++.+..... ....+.+.+....+.+.+.+|.+++...
T Consensus 89 ~~~~~~~~----------~~~~~~--~~~~vliiDe~~~~~~~~~-------~~~~l~~~l~~~~~~~~~~ii~~~~~~~ 149 (242)
T 3bos_A 89 GIHASIST----------ALLEGL--EQFDLICIDDVDAVAGHPL-------WEEAIFDLYNRVAEQKRGSLIVSASASP 149 (242)
T ss_dssp GGGGGSCG----------GGGTTG--GGSSEEEEETGGGGTTCHH-------HHHHHHHHHHHHHHHCSCEEEEEESSCT
T ss_pred HHHHHHHH----------HHHHhc--cCCCEEEEeccccccCCHH-------HHHHHHHHHHHHHHcCCCeEEEEcCCCH
Confidence 66543211 111111 3467999999999932100 0122333333333445543444443221
Q ss_pred HHhhhcccHHHHccC---cceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhhhcCCCcHHHHHHHH
Q 007723 435 HRTQFEKDKALARRF---QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVD 511 (591)
Q Consensus 435 ~~~~~~~d~aL~~Rf---~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i~~~~lp~~ai~lld 511 (591)
......++.+.+|| ..+.+.+|+.+++.+++...+.. .++.+++++++.+++.+.+. +..++.+++
T Consensus 150 -~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~~~g~------~r~l~~~l~ 218 (242)
T 3bos_A 150 -MEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAM----RGLQLPEDVGRFLLNRMARD------LRTLFDVLD 218 (242)
T ss_dssp -TTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHH----TTCCCCHHHHHHHHHHTTTC------HHHHHHHHH
T ss_pred -HHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHccCC------HHHHHHHHH
Confidence 01223458999999 68999999999999999877654 47899999999999887654 345788888
Q ss_pred HHhhHh
Q 007723 512 EAGSRA 517 (591)
Q Consensus 512 ~a~a~~ 517 (591)
.++..+
T Consensus 219 ~~~~~a 224 (242)
T 3bos_A 219 RLDKAS 224 (242)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877544
No 59
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.66 E-value=1.2e-15 Score=158.99 Aligned_cols=216 Identities=19% Similarity=0.232 Sum_probs=135.0
Q ss_pred ccCCCCccCCcHHHHHHHHHHHHhcCCCCCeEecCCCCcHHHHHHHHHHHHHhC----CCCcccc---------------
Q 007723 285 SEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQA----EVPVFLL--------------- 345 (591)
Q Consensus 285 r~~~~~~vvG~~~~i~~l~~~L~~~~~~~ilL~GppGvGKT~la~~lA~~l~~~----~~p~~~~--------------- 345 (591)
++..|++++|+++.++.+...+......+++|+||||||||++|+++++.+... ..|....
T Consensus 19 ~~~~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (350)
T 1g8p_A 19 PVFPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLSTN 98 (350)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCSCCC
T ss_pred CCCCchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCccccccccccccccccccccchhhhhccc
Confidence 456788999999977765555444556789999999999999999999987421 1111000
Q ss_pred ----CceEEEeehhh---hhccccccchHHHHHHHH-----HHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHH
Q 007723 346 ----SKRIMSLDMGL---LMAGAKERGELEARVTTL-----ISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISN 413 (591)
Q Consensus 346 ----~~~~~~ld~~~---l~~g~~~~g~~~~~i~~i-----~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n 413 (591)
...++.+..+. -+.|.. .+...+..- -..+..+.++||||||+|.+ ..+.++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~l~g~~---~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l-------------~~~~~~ 162 (350)
T 1g8p_A 99 VIRKPTPVVDLPLGVSEDRVVGAL---DIERAISKGEKAFEPGLLARANRGYLYIDECNLL-------------EDHIVD 162 (350)
T ss_dssp EEEECCCEEEECTTCCHHHHHCEE---CHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGS-------------CHHHHH
T ss_pred cccCCCcccccCCCcchhhheeec---hhhhhhcCCceeecCceeeecCCCEEEEeChhhC-------------CHHHHH
Confidence 01122211110 001100 001000000 00011235789999999999 566778
Q ss_pred hhcccccCC---------------cEEEEecCChhHHHhhhcccHHHHccCcc-eeecCC-CHHHHHHHHHHHHH-----
Q 007723 414 LLKPSLGRG---------------ELQCIASTTQDEHRTQFEKDKALARRFQP-VLISEP-SQEDAVRILLGLRE----- 471 (591)
Q Consensus 414 ~L~~~le~g---------------~v~lI~att~~e~~~~~~~d~aL~~Rf~~-i~i~~p-~~~e~~~iL~~~~~----- 471 (591)
.|+..++.+ .+++|+++|+.+ ..++++|.+||.. +.+..| +.++..+|+.....
T Consensus 163 ~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~----~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~ 238 (350)
T 1g8p_A 163 LLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEE----GDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDADP 238 (350)
T ss_dssp HHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCS----CCCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCC----CCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHHHhcccCc
Confidence 888777643 688999998742 3578999999985 899999 56666677765211
Q ss_pred ----------------H----HHhhcCCCCcHHHHHHHHHHhHHhhhcCCCcHHHHHHHHHHhhHhhhhhh
Q 007723 472 ----------------K----YEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELF 522 (591)
Q Consensus 472 ----------------~----~~~~~~i~i~~~al~~l~~~s~r~i~~~~lp~~ai~lld~a~a~~~~~~~ 522 (591)
+ .....++.++++++++++.++.+.-.. -++.++.+++.|.+.+.+.+.
T Consensus 239 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~--~~R~~~~ll~~a~~~A~~~~~ 307 (350)
T 1g8p_A 239 KAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGSD--GLRGELTLLRSARALAALEGA 307 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSC--SHHHHHHHHHHHHHHHHHTTC
T ss_pred hhhccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCC--CccHHHHHHHHHHHHHHHcCC
Confidence 0 012345789999999999888663210 256678888888776655543
No 60
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.66 E-value=9.4e-18 Score=168.84 Aligned_cols=209 Identities=22% Similarity=0.280 Sum_probs=128.6
Q ss_pred cccccCCCCccCCcHHHHHHHHHHHHh------------cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceE
Q 007723 282 ARASEELIDPVIGRETEIQRIIQILCR------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRI 349 (591)
Q Consensus 282 ~~~r~~~~~~vvG~~~~i~~l~~~L~~------------~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~ 349 (591)
.+..+..|++++|++..++.+.+++.. ....+++|+||||||||++|++++..+ +.++
T Consensus 3 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~----------~~~~ 72 (268)
T 2r62_A 3 AEKPNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA----------HVPF 72 (268)
T ss_dssp CCCCCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHH----------TCCC
T ss_pred ccCCCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHh----------CCCE
Confidence 345566899999999988888776542 235679999999999999999999987 2334
Q ss_pred EEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCC--CCCccHHHHHhhccccc-----CC
Q 007723 350 MSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRG--NKGTGLDISNLLKPSLG-----RG 422 (591)
Q Consensus 350 ~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~--~~~~~~~~~n~L~~~le-----~g 422 (591)
+.++...+... +.|.....++.++..+....+.||||||+|.+......+.. ........++.|+..++ ..
T Consensus 73 ~~v~~~~~~~~--~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 150 (268)
T 2r62_A 73 FSMGGSSFIEM--FVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENA 150 (268)
T ss_dssp CCCCSCTTTTS--CSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCS
T ss_pred EEechHHHHHh--hcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCC
Confidence 44444443321 11221222445666666667789999999999654311000 00011123444555543 23
Q ss_pred cEEEEecCChhHHHhhhcccHHHHc--cCc-ceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhhhc
Q 007723 423 ELQCIASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISD 499 (591)
Q Consensus 423 ~v~lI~att~~e~~~~~~~d~aL~~--Rf~-~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i~~ 499 (591)
.+++|++|+... .+++++.+ ||. .+.+..|+.+++.++|+..+..+ .+. ++..++.++..+.+|
T Consensus 151 ~v~vi~ttn~~~-----~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~----~~~-~~~~~~~la~~~~g~--- 217 (268)
T 2r62_A 151 PVIVLAATNRPE-----ILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGV----KLA-NDVNLQEVAKLTAGL--- 217 (268)
T ss_dssp CCEEEECBSCCT-----TSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSS----CCC-SSCCTTTTTSSSCSS---
T ss_pred CEEEEEecCCch-----hcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcC----CCC-CccCHHHHHHHcCCC---
Confidence 488999988763 46788988 886 59999999999999997654422 211 111234444443322
Q ss_pred CCCcHHHHHHHHHHhhHh
Q 007723 500 RYLPDKAIDLVDEAGSRA 517 (591)
Q Consensus 500 ~~lp~~ai~lld~a~a~~ 517 (591)
.+.....+++.|+..+
T Consensus 218 --~g~dl~~l~~~a~~~a 233 (268)
T 2r62_A 218 --AGADLANIINEAALLA 233 (268)
T ss_dssp --CHHHHHHHHHHHHHTT
T ss_pred --CHHHHHHHHHHHHHHH
Confidence 2235666777777543
No 61
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.66 E-value=5.7e-16 Score=155.66 Aligned_cols=201 Identities=16% Similarity=0.207 Sum_probs=124.5
Q ss_pred CCCccCCcHHHHHHHHHHHHh--cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhc------
Q 007723 288 LIDPVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA------ 359 (591)
Q Consensus 288 ~~~~vvG~~~~i~~l~~~L~~--~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~------ 359 (591)
+|+.++|++..++++.+.+.. ....+++|+||||||||++|+++++.+... +.+++.++++.+..
T Consensus 4 ~f~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~-------~~~~~~v~~~~~~~~~~~~~ 76 (265)
T 2bjv_A 4 YKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRW-------QGPFISLNCAALNENLLDSE 76 (265)
T ss_dssp ------CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTT-------TSCEEEEEGGGSCHHHHHHH
T ss_pred ccccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCcc-------CCCeEEEecCCCChhHHHHH
Confidence 688999999999998877654 456789999999999999999999876332 35677787765421
Q ss_pred --cccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCC-------------cE
Q 007723 360 --GAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-------------EL 424 (591)
Q Consensus 360 --g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g-------------~v 424 (591)
|. ..|.+..........+....+++|||||++.+ ..+.++.|+..++.+ .+
T Consensus 77 l~g~-~~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l-------------~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~ 142 (265)
T 2bjv_A 77 LFGH-EAGAFTGAQKRHPGRFERADGGTLFLDELATA-------------PMMVQEKLLRVIEYGELERVGGSQPLQVNV 142 (265)
T ss_dssp HHCC-C---------CCCCHHHHTTTSEEEEESGGGS-------------CHHHHHHHHHHHHHCEECCCCC--CEECCC
T ss_pred hcCC-cccccccccccccchhhhcCCcEEEEechHhc-------------CHHHHHHHHHHHHhCCeecCCCcccccCCe
Confidence 11 01111110000001122345679999999999 556777777777643 57
Q ss_pred EEEecCChhHHHh--hhcccHHHHccCcceeecCCCH----HHHHHHHHHHHHHHHhhcCC----CCcHHHHHHHHHHh-
Q 007723 425 QCIASTTQDEHRT--QFEKDKALARRFQPVLISEPSQ----EDAVRILLGLREKYEAHHNC----KFTLEAINAAVHLS- 493 (591)
Q Consensus 425 ~lI~att~~e~~~--~~~~d~aL~~Rf~~i~i~~p~~----~e~~~iL~~~~~~~~~~~~i----~i~~~al~~l~~~s- 493 (591)
++|++||.+.... .-.+.++|.+||..+.+..|+. +++..++..++.++...++. .+++++++.+..+.
T Consensus 143 ~iI~atn~~~~~~~~~~~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L~~~~~ 222 (265)
T 2bjv_A 143 RLVCATNADLPAMVNEGTFRADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRW 222 (265)
T ss_dssp EEEEEESSCHHHHHHHTSSCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHHHHSCC
T ss_pred EEEEecCcCHHHHHHcCCccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHHHhCCC
Confidence 8999998753221 1235689999997655555554 45666666666655554554 78999999888653
Q ss_pred HHhhhcCCCcHHHHHHHHHHhh
Q 007723 494 ARYISDRYLPDKAIDLVDEAGS 515 (591)
Q Consensus 494 ~r~i~~~~lp~~ai~lld~a~a 515 (591)
.+.+ .....+++.++.
T Consensus 223 ~gn~------reL~~~l~~~~~ 238 (265)
T 2bjv_A 223 PGNI------RELKNVVERSVY 238 (265)
T ss_dssp TTHH------HHHHHHHHHHHH
T ss_pred CCCH------HHHHHHHHHHHH
Confidence 2222 234556666654
No 62
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.64 E-value=2.5e-15 Score=155.60 Aligned_cols=196 Identities=14% Similarity=0.158 Sum_probs=127.8
Q ss_pred CCCccC-Cc--HHHHHHHHHHHHhc--CCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhcccc
Q 007723 288 LIDPVI-GR--ETEIQRIIQILCRR--TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAK 362 (591)
Q Consensus 288 ~~~~vv-G~--~~~i~~l~~~L~~~--~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~~ 362 (591)
+|++++ |+ ......+..++... ..++++|+||||||||++++++++.+... +..++.+++..+...
T Consensus 9 ~f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~-------~~~~~~i~~~~~~~~-- 79 (324)
T 1l8q_A 9 TLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR-------GYRVIYSSADDFAQA-- 79 (324)
T ss_dssp CSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT-------TCCEEEEEHHHHHHH--
T ss_pred CcccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC-------CCEEEEEEHHHHHHH--
Confidence 688887 53 34455566666554 35789999999999999999999988543 456777887665321
Q ss_pred ccchHHHH-HHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCCcEEEEecCChhHHHhhhcc
Q 007723 363 ERGELEAR-VTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEK 441 (591)
Q Consensus 363 ~~g~~~~~-i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g~v~lI~att~~e~~~~~~~ 441 (591)
..+..... ...+.... ..+.+|||||+|.+.+... ....+.+.+....+.+..++|+++++.. ....+
T Consensus 80 ~~~~~~~~~~~~~~~~~--~~~~vL~iDEi~~l~~~~~-------~~~~l~~~l~~~~~~~~~iii~~~~~~~--~l~~l 148 (324)
T 1l8q_A 80 MVEHLKKGTINEFRNMY--KSVDLLLLDDVQFLSGKER-------TQIEFFHIFNTLYLLEKQIILASDRHPQ--KLDGV 148 (324)
T ss_dssp HHHHHHHTCHHHHHHHH--HTCSEEEEECGGGGTTCHH-------HHHHHHHHHHHHHHTTCEEEEEESSCGG--GCTTS
T ss_pred HHHHHHcCcHHHHHHHh--cCCCEEEEcCcccccCChH-------HHHHHHHHHHHHHHCCCeEEEEecCChH--HHHHh
Confidence 11111110 11112212 2367999999999943211 1334444444445566666666554432 22357
Q ss_pred cHHHHccC---cceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhhhcCCCcHHHHHHHHHHhh
Q 007723 442 DKALARRF---QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGS 515 (591)
Q Consensus 442 d~aL~~Rf---~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i~~~~lp~~ai~lld~a~a 515 (591)
+++|.+|| ..+.+++ +.+++.+++...+.. .++.++++++++++..+ +.++ ....+|+.+++
T Consensus 149 ~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~----~~~~l~~~~l~~l~~~~-g~~r------~l~~~l~~~~~ 213 (324)
T 1l8q_A 149 SDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKE----FNLELRKEVIDYLLENT-KNVR------EIEGKIKLIKL 213 (324)
T ss_dssp CHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHH----TTCCCCHHHHHHHHHHC-SSHH------HHHHHHHHHHH
T ss_pred hhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHhC-CCHH------HHHHHHHHHHH
Confidence 89999999 4688999 999999999877654 48899999999999988 5543 35555555554
No 63
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.64 E-value=1.5e-15 Score=160.01 Aligned_cols=214 Identities=19% Similarity=0.198 Sum_probs=141.1
Q ss_pred CccCCcHHHHHHHHHHHHh----cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhc------
Q 007723 290 DPVIGRETEIQRIIQILCR----RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA------ 359 (591)
Q Consensus 290 ~~vvG~~~~i~~l~~~L~~----~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~------ 359 (591)
+.++|++++++.+...+.. ...++++|+||||||||++++.+++.+..... ..-.+..++++++.....
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~ 97 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARAS-SLGVLVKPIYVNARHRETPYRVAS 97 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHH-HHTCCEEEEEEETTTSCSHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHh-ccCCCeEEEEEECCcCCCHHHHHH
Confidence 6799999999999998754 35678999999999999999999998744200 000145667777543210
Q ss_pred ------c--ccccch-HHHHHHHHHHHHHhc-CCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhccccc----CCcEE
Q 007723 360 ------G--AKERGE-LEARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG----RGELQ 425 (591)
Q Consensus 360 ------g--~~~~g~-~~~~i~~i~~~~~~~-~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le----~g~v~ 425 (591)
+ ....|. ....+..++..+... .+.||||||+|.+.... ...+....|...++ ...+.
T Consensus 98 ~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~--------~~~~~l~~l~~~~~~~~~~~~~~ 169 (387)
T 2v1u_A 98 AIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP--------GGQDLLYRITRINQELGDRVWVS 169 (387)
T ss_dssp HHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST--------THHHHHHHHHHGGGCC-----CE
T ss_pred HHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC--------CCChHHHhHhhchhhcCCCceEE
Confidence 0 001121 223344444444333 36799999999995331 02233333334333 55788
Q ss_pred EEecCChhHHHhhhcccHHHHccC--cceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhhhcCCCc
Q 007723 426 CIASTTQDEHRTQFEKDKALARRF--QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLP 503 (591)
Q Consensus 426 lI~att~~e~~~~~~~d~aL~~Rf--~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i~~~~lp 503 (591)
+|++|+..++. ..+++.+.+|| ..+.+++|+.+++.+++...+... ..+..+++++++.+++++.+.-. .|
T Consensus 170 ~I~~t~~~~~~--~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~G---~~ 242 (387)
T 2v1u_A 170 LVGITNSLGFV--ENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEA--FNPGVLDPDVVPLCAALAAREHG---DA 242 (387)
T ss_dssp EEEECSCSTTS--SSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHH--BCTTTBCSSHHHHHHHHHHSSSC---CH
T ss_pred EEEEECCCchH--hhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhh--ccCCCCCHHHHHHHHHHHHHhcc---CH
Confidence 99998876432 34689999999 469999999999999998776532 23678899999999999873322 26
Q ss_pred HHHHHHHHHHhhHhhh
Q 007723 504 DKAIDLVDEAGSRAHI 519 (591)
Q Consensus 504 ~~ai~lld~a~a~~~~ 519 (591)
..++++++.++..+..
T Consensus 243 r~~~~~l~~a~~~a~~ 258 (387)
T 2v1u_A 243 RRALDLLRVAGEIAER 258 (387)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6788999888765443
No 64
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.64 E-value=1.8e-15 Score=163.30 Aligned_cols=208 Identities=16% Similarity=0.160 Sum_probs=134.0
Q ss_pred CCCccC-CcHH--HHHHHHHHHHhcC-CCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhccccc
Q 007723 288 LIDPVI-GRET--EIQRIIQILCRRT-KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKE 363 (591)
Q Consensus 288 ~~~~vv-G~~~--~i~~l~~~L~~~~-~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~~~ 363 (591)
+|++++ |+.. ....+..+...+. .++++|+||||+|||+|++++++.+... ..+..++.++...+... .
T Consensus 103 tfd~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~-----~~~~~v~~v~~~~~~~~--~ 175 (440)
T 2z4s_A 103 TFENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQN-----EPDLRVMYITSEKFLND--L 175 (440)
T ss_dssp SGGGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHH-----CCSSCEEEEEHHHHHHH--H
T ss_pred ChhhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHh-----CCCCeEEEeeHHHHHHH--H
Confidence 788887 6443 3444555554433 5788999999999999999999988542 12456777776654311 0
Q ss_pred cchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCCcEEEEecCChhHHHhhhcccH
Q 007723 364 RGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDK 443 (591)
Q Consensus 364 ~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g~v~lI~att~~e~~~~~~~d~ 443 (591)
.+.+.......+.......+.||||||+|.+.+... ....+.+.+....+.+..++|++.++.. ....+++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~~-------~q~~l~~~l~~l~~~~~~iIitt~~~~~--~l~~l~~ 246 (440)
T 2z4s_A 176 VDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKTG-------VQTELFHTFNELHDSGKQIVICSDREPQ--KLSEFQD 246 (440)
T ss_dssp HHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCHH-------HHHHHHHHHHHHHTTTCEEEEEESSCGG--GCSSCCH
T ss_pred HHHHHcccHHHHHHHhcCCCCEEEEeCcccccCChH-------HHHHHHHHHHHHHHCCCeEEEEECCCHH--HHHHHHH
Confidence 111100000011111112577999999999943211 1333444444445566666666554332 1234789
Q ss_pred HHHccC---cceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhhhcCCCcHHHHHHHHHHhhHhhhh
Q 007723 444 ALARRF---QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIE 520 (591)
Q Consensus 444 aL~~Rf---~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i~~~~lp~~ai~lld~a~a~~~~~ 520 (591)
+|.+|| ..+.+.+|+.+++.++|+..+... ++.++++++++++..+.+. ++.+..+|+.+++.+...
T Consensus 247 ~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~----~~~i~~e~l~~la~~~~gn------~R~l~~~L~~~~~~a~~~ 316 (440)
T 2z4s_A 247 RLVSRFQMGLVAKLEPPDEETRKSIARKMLEIE----HGELPEEVLNFVAENVDDN------LRRLRGAIIKLLVYKETT 316 (440)
T ss_dssp HHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHH----TCCCCTTHHHHHHHHCCSC------HHHHHHHHHHHHHHHHHS
T ss_pred HHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHc----CCCCCHHHHHHHHHhcCCC------HHHHHHHHHHHHHHHHHh
Confidence 999999 479999999999999998877654 8899999999999887554 445777888777665544
Q ss_pred h
Q 007723 521 L 521 (591)
Q Consensus 521 ~ 521 (591)
+
T Consensus 317 ~ 317 (440)
T 2z4s_A 317 G 317 (440)
T ss_dssp S
T ss_pred C
Confidence 3
No 65
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.63 E-value=5.4e-15 Score=156.32 Aligned_cols=211 Identities=24% Similarity=0.274 Sum_probs=129.7
Q ss_pred ccCCcHHHHHHHHHHHH----h--------------------------cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCC
Q 007723 291 PVIGRETEIQRIIQILC----R--------------------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEV 340 (591)
Q Consensus 291 ~vvG~~~~i~~l~~~L~----~--------------------------~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~ 340 (591)
.++|+++.++.|...+. + ....+++|+||||||||++|+++|+.+
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l----- 96 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHL----- 96 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHT-----
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHh-----
Confidence 48999999998887762 1 135689999999999999999999987
Q ss_pred CccccCceEEEeehhhhhccccccch-HHHHHHHHHHH----HHhcCCeEEEEcCcchhhcCCCCCC-CCCCccHHHHHh
Q 007723 341 PVFLLSKRIMSLDMGLLMAGAKERGE-LEARVTTLISE----IQKSGDVILFIDEVHTLIGSGTVGR-GNKGTGLDISNL 414 (591)
Q Consensus 341 p~~~~~~~~~~ld~~~l~~g~~~~g~-~~~~i~~i~~~----~~~~~~~ILfIDEi~~L~~~~~~~~-~~~~~~~~~~n~ 414 (591)
+.+++.+++..+.. ..+.|. .+..+..++.. +....++||||||+|.+...+.... ........+++.
T Consensus 97 -----~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~ 170 (376)
T 1um8_A 97 -----DIPIAISDATSLTE-AGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQA 170 (376)
T ss_dssp -----TCCEEEEEGGGCC---------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHH
T ss_pred -----CCCEEEecchhhhh-cCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHH
Confidence 45677777766531 112222 12233344332 2235678999999999965421100 001112347888
Q ss_pred hcccccCC-----------------------cEEEEecCChhHHHh----------------------------------
Q 007723 415 LKPSLGRG-----------------------ELQCIASTTQDEHRT---------------------------------- 437 (591)
Q Consensus 415 L~~~le~g-----------------------~v~lI~att~~e~~~---------------------------------- 437 (591)
|+..|+.+ ++.+|++++......
T Consensus 171 Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 250 (376)
T 1um8_A 171 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHD 250 (376)
T ss_dssp HHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHH
T ss_pred HHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHH
Confidence 88888743 346777665321110
Q ss_pred --hhcccHHHHccCc-ceeecCCCHHHHHHHHH----HHHHHHHhh-----cCCCCcHHHHHHHHHHhHHhhhcCCCcHH
Q 007723 438 --QFEKDKALARRFQ-PVLISEPSQEDAVRILL----GLREKYEAH-----HNCKFTLEAINAAVHLSARYISDRYLPDK 505 (591)
Q Consensus 438 --~~~~d~aL~~Rf~-~i~i~~p~~~e~~~iL~----~~~~~~~~~-----~~i~i~~~al~~l~~~s~r~i~~~~lp~~ 505 (591)
...+.++|.+||. .+.+.+++.+++..++. .+..++... .++.+++++++++++++...-.+ .+.
T Consensus 251 l~~~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~---~R~ 327 (376)
T 1um8_A 251 LVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTG---ARG 327 (376)
T ss_dssp HHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCT---GGG
T ss_pred HhhcCCChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccC---cHH
Confidence 1235699999995 68999999999999987 344444322 25679999999999886421111 123
Q ss_pred HHHHHHHHhh
Q 007723 506 AIDLVDEAGS 515 (591)
Q Consensus 506 ai~lld~a~a 515 (591)
...+++.++.
T Consensus 328 L~~~le~~~~ 337 (376)
T 1um8_A 328 LRAIIEDFCL 337 (376)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4555665554
No 66
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.62 E-value=4.4e-15 Score=152.28 Aligned_cols=181 Identities=21% Similarity=0.279 Sum_probs=127.5
Q ss_pred ccCCcHHHHHHHHHHHHhcC---------CCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhc--
Q 007723 291 PVIGRETEIQRIIQILCRRT---------KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA-- 359 (591)
Q Consensus 291 ~vvG~~~~i~~l~~~L~~~~---------~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~-- 359 (591)
.++|++..++.+...+.+.. ..+++|+||||||||++|++++..+... +..++.++++.+..
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~-------~~~~~~~~~~~~~~~~ 90 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT-------EEAMIRIDMTEYMEKH 90 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC-------GGGEEEEEGGGCCSTT
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC-------CcceEEeecccccccc
Confidence 48999999999988877632 2468999999999999999999988543 33466677654421
Q ss_pred ------ccc--ccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCC---------
Q 007723 360 ------GAK--ERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG--------- 422 (591)
Q Consensus 360 ------g~~--~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g--------- 422 (591)
|.. +.|... ...+...+....+.||||||++.+ ..++++.|+..++.+
T Consensus 91 ~~~~l~g~~~~~~~~~~--~~~~~~~~~~~~~~vl~lDEi~~l-------------~~~~~~~Ll~~le~~~~~~~~~~~ 155 (311)
T 4fcw_A 91 AVSRLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILFDAIEKA-------------HPDVFNILLQMLDDGRLTDSHGRT 155 (311)
T ss_dssp HHHHHHCCCTTSTTTTT--CCHHHHHHHHCSSEEEEEETGGGS-------------CHHHHHHHHHHHHHSEEECTTSCE
T ss_pred cHHHhcCCCCccccccc--cchHHHHHHhCCCeEEEEeChhhc-------------CHHHHHHHHHHHhcCEEEcCCCCE
Confidence 100 001000 012233344466789999999999 667888888887643
Q ss_pred ----cEEEEecCChh---------------HHHh------hhcccHHHHccCc-ceeecCCCHHHHHHHHHHHHHHHHhh
Q 007723 423 ----ELQCIASTTQD---------------EHRT------QFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAH 476 (591)
Q Consensus 423 ----~v~lI~att~~---------------e~~~------~~~~d~aL~~Rf~-~i~i~~p~~~e~~~iL~~~~~~~~~~ 476 (591)
++++|++||.. ++.. ...++++|.+||. .+.+.+|+.+++..|+...+.++...
T Consensus 156 ~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~ 235 (311)
T 4fcw_A 156 VDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRAR 235 (311)
T ss_dssp EECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHH
T ss_pred EECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHH
Confidence 45588888872 1111 1246799999996 68889999999999999877666443
Q ss_pred -----cCCCCcHHHHHHHHHHh
Q 007723 477 -----HNCKFTLEAINAAVHLS 493 (591)
Q Consensus 477 -----~~i~i~~~al~~l~~~s 493 (591)
..+.+++++++.++.++
T Consensus 236 ~~~~~~~~~~~~~~~~~l~~~~ 257 (311)
T 4fcw_A 236 LAEKRISLELTEAAKDFLAERG 257 (311)
T ss_dssp HHTTTCEEEECHHHHHHHHHHS
T ss_pred HHhCCcEEEeCHHHHHHHHHhC
Confidence 24678999999999865
No 67
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.62 E-value=4e-16 Score=160.37 Aligned_cols=200 Identities=19% Similarity=0.280 Sum_probs=130.2
Q ss_pred CccCCcHHHHHHHHHHHHh--cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhh--------c
Q 007723 290 DPVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM--------A 359 (591)
Q Consensus 290 ~~vvG~~~~i~~l~~~L~~--~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~--------~ 359 (591)
++++|++..++.+.+.+.+ ....+++|+||||||||++|++++......+ .+++.++++.+. .
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~-------~~~v~v~~~~~~~~l~~~~lf 74 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSARSD-------RPLVTLNCAALNESLLESELF 74 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSSCSS-------SCCCEEECSSCCHHHHHHHHT
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCcccC-------CCeEEEeCCCCChHHHHHHhc
Confidence 3589999999999888776 5667899999999999999999999764433 344555544321 1
Q ss_pred cccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCC-------------cEEE
Q 007723 360 GAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-------------ELQC 426 (591)
Q Consensus 360 g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g-------------~v~l 426 (591)
|. ..|.+..........+..+.+++||||||+.+ ..+.++.|+..++.+ .+++
T Consensus 75 g~-~~g~~tg~~~~~~g~~~~a~~g~L~LDEi~~l-------------~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~ri 140 (304)
T 1ojl_A 75 GH-EKGAFTGADKRREGRFVEADGGTLFLDEIGDI-------------SPLMQVRLLRAIQEREVQRVGSNQTISVDVRL 140 (304)
T ss_dssp CC-CSSCCC---CCCCCHHHHHTTSEEEEESCTTC-------------CHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEE
T ss_pred Cc-cccccCchhhhhcCHHHhcCCCEEEEeccccC-------------CHHHHHHHHHHHhcCEeeecCCcccccCCeEE
Confidence 21 01111111100111122345679999999999 566778888777654 3889
Q ss_pred EecCChhHHHh--hhcccHHHHccCcceeecCCCH----HHHHHHHHHHHHHHHhhcC---CCCcHHHHHHHHHHh-HHh
Q 007723 427 IASTTQDEHRT--QFEKDKALARRFQPVLISEPSQ----EDAVRILLGLREKYEAHHN---CKFTLEAINAAVHLS-ARY 496 (591)
Q Consensus 427 I~att~~e~~~--~~~~d~aL~~Rf~~i~i~~p~~----~e~~~iL~~~~~~~~~~~~---i~i~~~al~~l~~~s-~r~ 496 (591)
|++||.+.... .-..++.|.+||..+.+..|+. +++..++..++.++...++ ..+++++++.+..++ .+.
T Consensus 141 I~atn~~l~~~v~~g~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~~wpGn 220 (304)
T 1ojl_A 141 IAATHRDLAEEVSAGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHYDWPGN 220 (304)
T ss_dssp EEEESSCHHHHHHHTSSCHHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHCCCSSH
T ss_pred EEecCccHHHHHHhCCcHHHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcCCCCCC
Confidence 99998863221 1235688999998766666653 5666677766666654443 579999999998875 222
Q ss_pred hhcCCCcHHHHHHHHHHhhH
Q 007723 497 ISDRYLPDKAIDLVDEAGSR 516 (591)
Q Consensus 497 i~~~~lp~~ai~lld~a~a~ 516 (591)
+ .....+++.++..
T Consensus 221 v------ReL~~~l~~~~~~ 234 (304)
T 1ojl_A 221 I------RELENAIERAVVL 234 (304)
T ss_dssp H------HHHHHHHHHHHHH
T ss_pred H------HHHHHHHHHHHHh
Confidence 2 2355667766643
No 68
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.62 E-value=4.6e-15 Score=150.18 Aligned_cols=233 Identities=19% Similarity=0.213 Sum_probs=142.0
Q ss_pred CCCCccCCcHHHHHHHHHHHHh-------------cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEee
Q 007723 287 ELIDPVIGRETEIQRIIQILCR-------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (591)
Q Consensus 287 ~~~~~vvG~~~~i~~l~~~L~~-------------~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld 353 (591)
-+|+++.|.++..+.|.+.+.. ....+++|+||||||||+|+++|+..+ +..++.++
T Consensus 7 ~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~----------~~~~i~i~ 76 (274)
T 2x8a_A 7 VTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANES----------GLNFISVK 76 (274)
T ss_dssp -----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHT----------TCEEEEEE
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHc----------CCCEEEEE
Confidence 4688999999888877764321 123458999999999999999999976 34567777
Q ss_pred hhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhccccc----CCcEEEEec
Q 007723 354 MGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG----RGELQCIAS 429 (591)
Q Consensus 354 ~~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le----~g~v~lI~a 429 (591)
...+. ..+.++.+..+..+|+.+....+.++|+||++.+........ .+......+.+...|. +..++++++
T Consensus 77 g~~l~--~~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~--~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~ 152 (274)
T 2x8a_A 77 GPELL--NMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRE--TGASVRVVNQLLTEMDGLEARQQVFIMAA 152 (274)
T ss_dssp TTTTC--SSTTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC-----------CTTHHHHHHHHHHTCCSTTCEEEEEE
T ss_pred cHHHH--hhhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCc--chHHHHHHHHHHHhhhcccccCCEEEEee
Confidence 66654 235677888899999988767789999999999864322110 0111233444444443 345677788
Q ss_pred CChhHHHhhhcccHHHHc--cCc-ceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHH-HHHHHHHHh--HHhhhcCCCc
Q 007723 430 TTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLE-AINAAVHLS--ARYISDRYLP 503 (591)
Q Consensus 430 tt~~e~~~~~~~d~aL~~--Rf~-~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~-al~~l~~~s--~r~i~~~~lp 503 (591)
|+..+ .+|+++.| ||+ .|.++.|+.+++.+||+.+.... ....+..+ .++.++... .+| .+
T Consensus 153 tn~p~-----~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~---~~~~~~~~~~~~~la~~~~~~g~-----sg 219 (274)
T 2x8a_A 153 TNRPD-----IIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNG---TKPPLDADVNLEAIAGDLRCDCY-----TG 219 (274)
T ss_dssp ESCGG-----GSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTT---BTTBBCTTCCHHHHHTCSGGGSC-----CH
T ss_pred cCChh-----hCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcc---cCCCCccccCHHHHHHhhccCCc-----CH
Confidence 87764 47999998 998 59999999999999997655321 12222221 244555432 233 34
Q ss_pred HHHHHHHHHHhhHhhhhhhccchhhhhhhhcCChHHHHHHHHHHhhcchHHHHhh
Q 007723 504 DKAIDLVDEAGSRAHIELFKRKKEQQTCILSKPPDDYWQEIRTVQAMHEVVQGSR 558 (591)
Q Consensus 504 ~~ai~lld~a~a~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~d~~~a~~ 558 (591)
.....++.+|+..+..+....... ........|+.+||+.|.+
T Consensus 220 adl~~l~~~a~~~a~~~~~~~~~~------------~~~~~~~~i~~~df~~al~ 262 (274)
T 2x8a_A 220 ADLSALVREASICALRQEMARQKS------------GNEKGELKVSHKHFEEAFK 262 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHC-----------------------CCBCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhhccc------------cccccCCeecHHHHHHHHH
Confidence 455667777775432221111000 0001123588999998866
No 69
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.61 E-value=2.6e-14 Score=150.74 Aligned_cols=214 Identities=15% Similarity=0.164 Sum_probs=144.4
Q ss_pred cccccccCCCCccCCcHHHHHHHHHHHHh----cCCC--CCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEee
Q 007723 280 LTARASEELIDPVIGRETEIQRIIQILCR----RTKN--NPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLD 353 (591)
Q Consensus 280 l~~~~r~~~~~~vvG~~~~i~~l~~~L~~----~~~~--~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld 353 (591)
|..+++| +.++||+++++.+...+.. .... +++|+||||||||++++.++..+.... +..+++++
T Consensus 10 l~~~~~p---~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~------~~~~~~i~ 80 (389)
T 1fnn_A 10 FSPSYVP---KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT------TARFVYIN 80 (389)
T ss_dssp GSTTCCC---SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC------CCEEEEEE
T ss_pred cCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc------CeeEEEEe
Confidence 4455555 6799999999999988876 2334 789999999999999999999884321 34566666
Q ss_pred hhhhhc------------cc--cccc-hHHHHHHHHHHHHHh-cCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcc
Q 007723 354 MGLLMA------------GA--KERG-ELEARVTTLISEIQK-SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKP 417 (591)
Q Consensus 354 ~~~l~~------------g~--~~~g-~~~~~i~~i~~~~~~-~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~ 417 (591)
+..... +. ...+ .....+..+...+.. .++.||||||+|.+ ..+.++.|..
T Consensus 81 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l-------------~~~~~~~L~~ 147 (389)
T 1fnn_A 81 GFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL-------------APDILSTFIR 147 (389)
T ss_dssp TTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS-------------CHHHHHHHHH
T ss_pred CccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc-------------chHHHHHHHH
Confidence 433210 00 0011 122223333333333 34789999999999 4456666666
Q ss_pred cccC------CcEEEEecCChhHHHhhhcccHHHHccCc--ceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHH
Q 007723 418 SLGR------GELQCIASTTQDEHRTQFEKDKALARRFQ--PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAA 489 (591)
Q Consensus 418 ~le~------g~v~lI~att~~e~~~~~~~d~aL~~Rf~--~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l 489 (591)
.++. ..+.+|++++..++.. .+++.+.+||. .+.+++++.++..+++...+... .....+++++++.+
T Consensus 148 ~~~~~~~~~~~~~~iI~~~~~~~~~~--~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~l 223 (389)
T 1fnn_A 148 LGQEADKLGAFRIALVIVGHNDAVLN--NLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAG--LAEGSYSEDILQMI 223 (389)
T ss_dssp HTTCHHHHSSCCEEEEEEESSTHHHH--TSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHH--BCTTSSCHHHHHHH
T ss_pred HHHhCCCCCcCCEEEEEEECCchHHH--HhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhh--cCCCCCCHHHHHHH
Confidence 6642 4788888877654332 36788999997 49999999999999998776543 12347899999999
Q ss_pred HHHhHHhhh---cCCCcHHHHHHHHHHhhHhhh
Q 007723 490 VHLSARYIS---DRYLPDKAIDLVDEAGSRAHI 519 (591)
Q Consensus 490 ~~~s~r~i~---~~~lp~~ai~lld~a~a~~~~ 519 (591)
++.+.+... ....|..++++++.++..+..
T Consensus 224 ~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~ 256 (389)
T 1fnn_A 224 ADITGAQTPLDTNRGDARLAIDILYRSAYAAQQ 256 (389)
T ss_dssp HHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 999843300 012367789999888765433
No 70
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.61 E-value=1.7e-14 Score=151.55 Aligned_cols=209 Identities=19% Similarity=0.240 Sum_probs=141.1
Q ss_pred CccCCcHHHHHHHHHHHHh----cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhc------
Q 007723 290 DPVIGRETEIQRIIQILCR----RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA------ 359 (591)
Q Consensus 290 ~~vvG~~~~i~~l~~~L~~----~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~------ 359 (591)
+.++||+++++.+...+.. ....+++|+||+|||||++++.+++.+...... +..++.+++.....
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~ 95 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLG----KFKHVYINTRQIDTPYRVLA 95 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCS----SCEEEEEEHHHHCSHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcC----CceEEEEECCCCCCHHHHHH
Confidence 6789999999999988764 345688999999999999999999987542100 45666777543210
Q ss_pred ------cc--cccc-hHHHHHHHHHHHHHhcC-CeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccc---cCCcEEE
Q 007723 360 ------GA--KERG-ELEARVTTLISEIQKSG-DVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSL---GRGELQC 426 (591)
Q Consensus 360 ------g~--~~~g-~~~~~i~~i~~~~~~~~-~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~l---e~g~v~l 426 (591)
+. ...+ .....+..+...+...+ +.||||||+|.+..... .+....|...+ ....+.+
T Consensus 96 ~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~---------~~~l~~l~~~~~~~~~~~~~~ 166 (386)
T 2qby_A 96 DLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN---------DDILYKLSRINSEVNKSKISF 166 (386)
T ss_dssp HHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC---------STHHHHHHHHHHSCCC--EEE
T ss_pred HHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc---------CHHHHHHhhchhhcCCCeEEE
Confidence 00 0111 13333444544444433 78999999999964421 22344444444 4557888
Q ss_pred EecCChhHHHhhhcccHHHHccC--cceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhhhcCCCcH
Q 007723 427 IASTTQDEHRTQFEKDKALARRF--QPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPD 504 (591)
Q Consensus 427 I~att~~e~~~~~~~d~aL~~Rf--~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i~~~~lp~ 504 (591)
|++++..++. ..+++.+.+|| ..+.+++++.++..+++...+... .....+++++++.++.++..... .|.
T Consensus 167 I~~~~~~~~~--~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~G---~~r 239 (386)
T 2qby_A 167 IGITNDVKFV--DLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMA--FKPGVLPDNVIKLCAALAAREHG---DAR 239 (386)
T ss_dssp EEEESCGGGG--GGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHH--BCSSCSCHHHHHHHHHHHHHTTC---CHH
T ss_pred EEEECCCChH--hhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhh--ccCCCCCHHHHHHHHHHHHHhcC---CHH
Confidence 8888876432 24568899999 469999999999999998765432 22468899999999998873222 366
Q ss_pred HHHHHHHHHhhHhh
Q 007723 505 KAIDLVDEAGSRAH 518 (591)
Q Consensus 505 ~ai~lld~a~a~~~ 518 (591)
.++++++.++..+.
T Consensus 240 ~~~~ll~~a~~~a~ 253 (386)
T 2qby_A 240 RALDLLRVSGEIAE 253 (386)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 78899988875544
No 71
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.61 E-value=9.2e-15 Score=145.86 Aligned_cols=205 Identities=21% Similarity=0.260 Sum_probs=132.1
Q ss_pred ccCCCCccCCcHHHHHHHHHHHHhc------------CCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEe
Q 007723 285 SEELIDPVIGRETEIQRIIQILCRR------------TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSL 352 (591)
Q Consensus 285 r~~~~~~vvG~~~~i~~l~~~L~~~------------~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~l 352 (591)
.+-+|++++|.++....+.++...- -..+++|+||||||||+++++++..+ ...++.+
T Consensus 11 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~----------~~~~i~~ 80 (254)
T 1ixz_A 11 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA----------RVPFITA 80 (254)
T ss_dssp CSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT----------TCCEEEE
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHh----------CCCEEEe
Confidence 4457899999998777766543321 13458999999999999999999876 2445666
Q ss_pred ehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCC-CCCCccHHHHHhhccccc----CCcEEEE
Q 007723 353 DMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGR-GNKGTGLDISNLLKPSLG----RGELQCI 427 (591)
Q Consensus 353 d~~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~-~~~~~~~~~~n~L~~~le----~g~v~lI 427 (591)
+...+.. .+.+.....+..+++.+....+.++||||+|.+......+. ..........+.++..++ ...++++
T Consensus 81 ~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~ 158 (254)
T 1ixz_A 81 SGSDFVE--MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVM 158 (254)
T ss_dssp EHHHHHH--SCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEE
T ss_pred eHHHHHH--HHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEE
Confidence 6655542 23455666777888876555678999999999864432100 000111233444444443 2335666
Q ss_pred ecCChhHHHhhhcccHHHHc--cCc-ceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHH-HHHHHHHhHHhhhcCCCc
Q 007723 428 ASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEA-INAAVHLSARYISDRYLP 503 (591)
Q Consensus 428 ~att~~e~~~~~~~d~aL~~--Rf~-~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~a-l~~l~~~s~r~i~~~~lp 503 (591)
++++.++ .+|+++.+ ||. .+.++.|+.+++.+||+.... ++.+++++ +..+++.+.+|. +
T Consensus 159 a~t~~p~-----~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~------~~~~~~~~~~~~la~~~~G~~-----~ 222 (254)
T 1ixz_A 159 AATNRPD-----ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR------GKPLAEDVDLALLAKRTPGFV-----G 222 (254)
T ss_dssp EEESCGG-----GSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHT------TSCBCTTCCHHHHHHTCTTCC-----H
T ss_pred EccCCch-----hCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHc------CCCCCcccCHHHHHHHcCCCC-----H
Confidence 7776653 37899998 786 589999999999999875443 34444443 667777666553 2
Q ss_pred HHHHHHHHHHhhHh
Q 007723 504 DKAIDLVDEAGSRA 517 (591)
Q Consensus 504 ~~ai~lld~a~a~~ 517 (591)
.....++.+|+..+
T Consensus 223 ~dl~~~~~~a~~~a 236 (254)
T 1ixz_A 223 ADLENLLNEAALLA 236 (254)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34567777776543
No 72
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.60 E-value=5.6e-15 Score=149.03 Aligned_cols=196 Identities=14% Similarity=0.102 Sum_probs=130.1
Q ss_pred CccCCcHHHHHHHHH-------HHH---hcCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhc
Q 007723 290 DPVIGRETEIQRIIQ-------ILC---RRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA 359 (591)
Q Consensus 290 ~~vvG~~~~i~~l~~-------~L~---~~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~ 359 (591)
+.++|+++.++.++. .+. .....+++|+||||||||++|+++++.+ +..++.++.+..+.
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~----------~~~~~~i~~~~~~~ 102 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEES----------NFPFIKICSPDKMI 102 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHH----------TCSEEEEECGGGCT
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHh----------CCCEEEEeCHHHhc
Confidence 457888887766665 232 2344678999999999999999999986 55677777665554
Q ss_pred cccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhccccc-----CCcEEEEecCChhH
Q 007723 360 GAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG-----RGELQCIASTTQDE 434 (591)
Q Consensus 360 g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le-----~g~v~lI~att~~e 434 (591)
|.. .+.....++.+++.+....+.+|||||+|.|.+.... +...+..+++.|...++ ...+++|++|+..+
T Consensus 103 g~~-~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~---~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~ 178 (272)
T 1d2n_A 103 GFS-ETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPI---GPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKD 178 (272)
T ss_dssp TCC-HHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTT---TTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHH
T ss_pred CCc-hHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCC---ChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChh
Confidence 432 2334456777888776677899999999999765432 11234566677766654 23567888888764
Q ss_pred HHhhhcccH-HHHccCc-ceeecCCCH-HHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhhhcCCCcHHHHHHHH
Q 007723 435 HRTQFEKDK-ALARRFQ-PVLISEPSQ-EDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVD 511 (591)
Q Consensus 435 ~~~~~~~d~-aL~~Rf~-~i~i~~p~~-~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i~~~~lp~~ai~lld 511 (591)
.+++ .+.+||. .+.+++++. +++..++.. ...++++++..+++.+.+|--... ..+++++++
T Consensus 179 -----~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~---------~~~~~~~~~~~l~~~~~g~~~~g~-ir~l~~~l~ 243 (272)
T 1d2n_A 179 -----VLQEMEMLNAFSTTIHVPNIATGEQLLEALEL---------LGNFKDKERTTIAQQVKGKKVWIG-IKKLLMLIE 243 (272)
T ss_dssp -----HHHHTTCTTTSSEEEECCCEEEHHHHHHHHHH---------HTCSCHHHHHHHHHHHTTSEEEEC-HHHHHHHHH
T ss_pred -----hcchhhhhcccceEEcCCCccHHHHHHHHHHh---------cCCCCHHHHHHHHHHhcCCCcccc-HHHHHHHHH
Confidence 2334 5678985 466665554 554444422 135789999999998877521111 335777887
Q ss_pred HHh
Q 007723 512 EAG 514 (591)
Q Consensus 512 ~a~ 514 (591)
.+.
T Consensus 244 ~a~ 246 (272)
T 1d2n_A 244 MSL 246 (272)
T ss_dssp HHT
T ss_pred HHh
Confidence 765
No 73
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.60 E-value=1.8e-14 Score=152.04 Aligned_cols=217 Identities=18% Similarity=0.155 Sum_probs=143.2
Q ss_pred cccccccCCCCccCCcHHHHHHHHHHHHh----cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCcccc-CceEEEeeh
Q 007723 280 LTARASEELIDPVIGRETEIQRIIQILCR----RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLL-SKRIMSLDM 354 (591)
Q Consensus 280 l~~~~r~~~~~~vvG~~~~i~~l~~~L~~----~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~-~~~~~~ld~ 354 (591)
|..++.| ++++|++++++.+...+.. ...++++|+||||||||++++.+++.+........-. +..++++++
T Consensus 13 l~~~~~p---~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~ 89 (384)
T 2qby_B 13 IDPLSVF---KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNC 89 (384)
T ss_dssp TCHHHHC---SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEH
T ss_pred cCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEEC
Confidence 4445555 6799999999999887765 3346789999999999999999999875420000001 456777776
Q ss_pred hhhh-c-------------cc--cccch-HHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHH-HHhhc
Q 007723 355 GLLM-A-------------GA--KERGE-LEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDI-SNLLK 416 (591)
Q Consensus 355 ~~l~-~-------------g~--~~~g~-~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~-~n~L~ 416 (591)
.... . |. ...+. ....+..+...+. ..+.||||||+|.+.... ..+. ...|.
T Consensus 90 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~~~~vlilDEi~~l~~~~---------~~~~~l~~l~ 159 (384)
T 2qby_B 90 REVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTR-NIRAIIYLDEVDTLVKRR---------GGDIVLYQLL 159 (384)
T ss_dssp HHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHS-SSCEEEEEETTHHHHHST---------TSHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhc-cCCCEEEEECHHHhccCC---------CCceeHHHHh
Confidence 5432 0 00 00111 1222333333332 333499999999995431 1233 44444
Q ss_pred ccccCCcEEEEecCChhHHHhhhcccHHHHccCc-ceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHH
Q 007723 417 PSLGRGELQCIASTTQDEHRTQFEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 495 (591)
Q Consensus 417 ~~le~g~v~lI~att~~e~~~~~~~d~aL~~Rf~-~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r 495 (591)
... ..+.+|++++..++ ...+++++.+||. .+.+++++.++..+++...+.. ...+..+++++++.+++++.+
T Consensus 160 ~~~--~~~~iI~~t~~~~~--~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~--~~~~~~~~~~~~~~i~~~~~~ 233 (384)
T 2qby_B 160 RSD--ANISVIMISNDINV--RDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEY--GLIKGTYDDEILSYIAAISAK 233 (384)
T ss_dssp TSS--SCEEEEEECSSTTT--TTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHH--TSCTTSCCSHHHHHHHHHHHT
T ss_pred cCC--cceEEEEEECCCch--HhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHh--hcccCCcCHHHHHHHHHHHHh
Confidence 443 67889998887642 1346799999974 7999999999999999876653 123568899999999999874
Q ss_pred hhhcCCCcHHHHHHHHHHhhHhh
Q 007723 496 YISDRYLPDKAIDLVDEAGSRAH 518 (591)
Q Consensus 496 ~i~~~~lp~~ai~lld~a~a~~~ 518 (591)
+..+ +..++++++.++..+.
T Consensus 234 ~~G~---~r~a~~~l~~a~~~a~ 253 (384)
T 2qby_B 234 EHGD---ARKAVNLLFRAAQLAS 253 (384)
T ss_dssp TCCC---HHHHHHHHHHHHHHTT
T ss_pred ccCC---HHHHHHHHHHHHHHhc
Confidence 3333 6678999988875543
No 74
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.60 E-value=2.9e-15 Score=163.19 Aligned_cols=206 Identities=21% Similarity=0.259 Sum_probs=137.9
Q ss_pred ccCCCCccCCcHHHHHHHHHHHHh---c---------CCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEe
Q 007723 285 SEELIDPVIGRETEIQRIIQILCR---R---------TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSL 352 (591)
Q Consensus 285 r~~~~~~vvG~~~~i~~l~~~L~~---~---------~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~l 352 (591)
.+.+|++++|+++.+..+.+++.. + -..+++|+||||||||+|+++|+..+ +..++.+
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~----------~~~~i~i 95 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA----------RVPFITA 95 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT----------TCCEEEE
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCEEEE
Confidence 456899999999988877765432 1 13468999999999999999999977 3567788
Q ss_pred ehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCC-CCCccHHHHHhhccccc----CCcEEEE
Q 007723 353 DMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRG-NKGTGLDISNLLKPSLG----RGELQCI 427 (591)
Q Consensus 353 d~~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~-~~~~~~~~~n~L~~~le----~g~v~lI 427 (591)
+...+.. .+.|....+++.+|+.+....+.|+||||||.+......+.+ .........+.|+..|+ ...+++|
T Consensus 96 ~g~~~~~--~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~vivi 173 (499)
T 2dhr_A 96 SGSDFVE--MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVM 173 (499)
T ss_dssp EGGGGTS--SCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEE
T ss_pred ehhHHHH--hhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEE
Confidence 8777653 345667777888877665445689999999998654321100 00111234455554443 2356788
Q ss_pred ecCChhHHHhhhcccHHHHc--cCc-ceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHH-HHHHHHHhHHhhhcCCCc
Q 007723 428 ASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEA-INAAVHLSARYISDRYLP 503 (591)
Q Consensus 428 ~att~~e~~~~~~~d~aL~~--Rf~-~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~a-l~~l~~~s~r~i~~~~lp 503 (591)
++|+.++ .+|+++.| ||. .|.|..|+.+++.+||+.+.. ++.+++++ +..+++.+.+|. +
T Consensus 174 Aatn~p~-----~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~------~~~l~~dv~l~~lA~~t~G~~-----g 237 (499)
T 2dhr_A 174 AATNRPD-----ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR------GKPLAEDVDLALLAKRTPGFV-----G 237 (499)
T ss_dssp ECCSCGG-----GSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTS------SSCCCCSSTTHHHHTTSCSCC-----H
T ss_pred EecCChh-----hcCcccccccccceEEecCCCCHHHHHHHHHHHHh------cCCCChHHHHHHHHHhcCCCC-----H
Confidence 8888764 37899998 776 589999999999999864432 34454443 556666554443 2
Q ss_pred HHHHHHHHHHhhHhh
Q 007723 504 DKAIDLVDEAGSRAH 518 (591)
Q Consensus 504 ~~ai~lld~a~a~~~ 518 (591)
.....++.+|+..+.
T Consensus 238 adL~~lv~~Aa~~A~ 252 (499)
T 2dhr_A 238 ADLENLLNEAALLAA 252 (499)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 345567777765443
No 75
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.59 E-value=6.7e-15 Score=154.94 Aligned_cols=193 Identities=23% Similarity=0.275 Sum_probs=126.2
Q ss_pred cCCcHHHHHHHHHHHHh---------------cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhh
Q 007723 292 VIGRETEIQRIIQILCR---------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGL 356 (591)
Q Consensus 292 vvG~~~~i~~l~~~L~~---------------~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~ 356 (591)
++|++..++.+...+.. ....+++|+||||||||++|++||+.+ +.+++.++++.
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~----------~~~~~~~~~~~ 86 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL----------DVPFTMADATT 86 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT----------TCCEEEEEHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc----------CCCEEEechHH
Confidence 79999999998887731 145789999999999999999999987 56788888887
Q ss_pred hhccccccchH-HHHHHHHHHHH----HhcCCeEEEEcCcchhhcCCCCCCCCC-CccHHHHHhhcccccCC--------
Q 007723 357 LMAGAKERGEL-EARVTTLISEI----QKSGDVILFIDEVHTLIGSGTVGRGNK-GTGLDISNLLKPSLGRG-------- 422 (591)
Q Consensus 357 l~~g~~~~g~~-~~~i~~i~~~~----~~~~~~ILfIDEi~~L~~~~~~~~~~~-~~~~~~~n~L~~~le~g-------- 422 (591)
+... .+.|.. ...+..++... ....++||||||++.+.........+. .....+++.|+..|+..
T Consensus 87 l~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~ 165 (363)
T 3hws_A 87 LTEA-GYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQG 165 (363)
T ss_dssp HTTC-HHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC--------
T ss_pred hccc-ccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCcc
Confidence 6521 233332 33445555443 334567999999999965532211100 01123788888888721
Q ss_pred ---------------cEEEEecCChhHHHhh----------------------------------------hcccHHHHc
Q 007723 423 ---------------ELQCIASTTQDEHRTQ----------------------------------------FEKDKALAR 447 (591)
Q Consensus 423 ---------------~v~lI~att~~e~~~~----------------------------------------~~~d~aL~~ 447 (591)
++.+|++++...+... ..+.++|.+
T Consensus 166 ~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~ 245 (363)
T 3hws_A 166 GRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG 245 (363)
T ss_dssp --------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT
T ss_pred ccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc
Confidence 1233333332211110 115799999
Q ss_pred cCcc-eeecCCCHHHHHHHHHH----HHHHHHhh-----cCCCCcHHHHHHHHHHhHH
Q 007723 448 RFQP-VLISEPSQEDAVRILLG----LREKYEAH-----HNCKFTLEAINAAVHLSAR 495 (591)
Q Consensus 448 Rf~~-i~i~~p~~~e~~~iL~~----~~~~~~~~-----~~i~i~~~al~~l~~~s~r 495 (591)
||.. +.+.+|+.++..+|+.. +..++... ..+.++++++++++..+..
T Consensus 246 R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~ 303 (363)
T 3hws_A 246 RLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMA 303 (363)
T ss_dssp TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHH
T ss_pred ccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcC
Confidence 9985 55889999999999876 55554422 2356899999999987533
No 76
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.58 E-value=4.7e-14 Score=142.80 Aligned_cols=205 Identities=21% Similarity=0.260 Sum_probs=132.5
Q ss_pred ccCCCCccCCcHHHHHHHHHHHHhc------------CCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEe
Q 007723 285 SEELIDPVIGRETEIQRIIQILCRR------------TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSL 352 (591)
Q Consensus 285 r~~~~~~vvG~~~~i~~l~~~L~~~------------~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~l 352 (591)
.+-+|++++|.++.+..+.++...- -..+++|+|||||||||++++++..+ ...++.+
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~----------~~~~i~~ 104 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA----------RVPFITA 104 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHT----------TCCEEEE
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHc----------CCCEEEe
Confidence 4567999999998877776654321 13458999999999999999999877 2445666
Q ss_pred ehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCC-CCCccHHHHHhhccccc----CCcEEEE
Q 007723 353 DMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRG-NKGTGLDISNLLKPSLG----RGELQCI 427 (591)
Q Consensus 353 d~~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~-~~~~~~~~~n~L~~~le----~g~v~lI 427 (591)
+...+.. .+.+.....+..+++......+.++|+||++.+......+.+ .........+.++..+. ...++++
T Consensus 105 ~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~ 182 (278)
T 1iy2_A 105 SGSDFVE--MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVM 182 (278)
T ss_dssp EHHHHHH--STTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEE
T ss_pred cHHHHHH--HHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEE
Confidence 6655442 234556667788888776566789999999988543221000 00011223334433333 2236667
Q ss_pred ecCChhHHHhhhcccHHHHc--cCc-ceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHH-HHHHHHHhHHhhhcCCCc
Q 007723 428 ASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEA-INAAVHLSARYISDRYLP 503 (591)
Q Consensus 428 ~att~~e~~~~~~~d~aL~~--Rf~-~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~a-l~~l~~~s~r~i~~~~lp 503 (591)
++++.++ .+|+++.+ ||. .+.++.|+.+++.+||+.+.. ++.+++++ +..++..+.+|. +
T Consensus 183 a~t~~p~-----~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~------~~~~~~~~~~~~la~~~~G~~-----~ 246 (278)
T 1iy2_A 183 AATNRPD-----ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR------GKPLAEDVDLALLAKRTPGFV-----G 246 (278)
T ss_dssp EEESCTT-----SSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHT------TSCBCTTCCHHHHHHTCTTCC-----H
T ss_pred EecCCch-----hCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHc------cCCCCcccCHHHHHHHcCCCC-----H
Confidence 7777653 37899998 786 589999999999999975443 34454444 666666665553 2
Q ss_pred HHHHHHHHHHhhHh
Q 007723 504 DKAIDLVDEAGSRA 517 (591)
Q Consensus 504 ~~ai~lld~a~a~~ 517 (591)
.....++.+|+..+
T Consensus 247 ~dl~~l~~~a~~~a 260 (278)
T 1iy2_A 247 ADLENLLNEAALLA 260 (278)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33456777776543
No 77
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.55 E-value=8.9e-15 Score=161.94 Aligned_cols=179 Identities=19% Similarity=0.240 Sum_probs=115.7
Q ss_pred CccCCcHHHHHHHHHHHHh------cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhc----
Q 007723 290 DPVIGRETEIQRIIQILCR------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA---- 359 (591)
Q Consensus 290 ~~vvG~~~~i~~l~~~L~~------~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~---- 359 (591)
++++|.++..+.+.+.+.. ....+++|+||||||||+++++++..+ +..+..++++.+..
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l----------~~~~~~i~~~~~~~~~~~ 150 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL----------GRKFVRISLGGVRDESEI 150 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH----------TCEEEEECCCC-------
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc----------CCCeEEEEecccchhhhh
Confidence 4589999988887664432 124578999999999999999999988 34455555433221
Q ss_pred -c--ccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccC---------------
Q 007723 360 -G--AKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR--------------- 421 (591)
Q Consensus 360 -g--~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~--------------- 421 (591)
| ..+.|.....+...+..+. ..+.||||||++.+.... ..+.++.|+..|+.
T Consensus 151 ~g~~~~~ig~~~~~~~~~~~~a~-~~~~vl~lDEid~l~~~~---------~~~~~~~LL~~ld~~~~~~~~~~~~~~~~ 220 (543)
T 3m6a_A 151 RGHRRTYVGAMPGRIIQGMKKAG-KLNPVFLLDEIDKMSSDF---------RGDPSSAMLEVLDPEQNSSFSDHYIEETF 220 (543)
T ss_dssp -------------CHHHHHHTTC-SSSEEEEEEESSSCC------------------CCGGGTCTTTTTBCCCSSSCCCC
T ss_pred hhHHHHHhccCchHHHHHHHHhh-ccCCEEEEhhhhhhhhhh---------ccCHHHHHHHHHhhhhcceeecccCCeee
Confidence 1 0233333333444444332 245599999999994321 22356777777752
Q ss_pred --CcEEEEecCChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHH-HHHHhhc-----CCCCcHHHHHHHHHHh
Q 007723 422 --GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLR-EKYEAHH-----NCKFTLEAINAAVHLS 493 (591)
Q Consensus 422 --g~v~lI~att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~-~~~~~~~-----~i~i~~~al~~l~~~s 493 (591)
..+++|+|||.. ..++++|++||..|.++.|+.++...|+.... .++...+ ++.++++++..++...
T Consensus 221 ~~~~v~iI~ttN~~-----~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~ 295 (543)
T 3m6a_A 221 DLSKVLFIATANNL-----ATIPGPLRDRMEIINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYY 295 (543)
T ss_dssp BCSSCEEEEECSST-----TTSCHHHHHHEEEEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHH
T ss_pred cccceEEEeccCcc-----ccCCHHHHhhcceeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhC
Confidence 357889988884 36789999999999999999999999998743 4444443 3467999999988743
No 78
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.53 E-value=4.4e-14 Score=147.05 Aligned_cols=171 Identities=16% Similarity=0.183 Sum_probs=121.8
Q ss_pred cHHHHHHHHHHHHhcCCCC-CeEecCCCCcHHHHHHHHHHHHHhCCCCc--cc------------cCceEEEeehhhhhc
Q 007723 295 RETEIQRIIQILCRRTKNN-PILLGESGVGKTAIAEGLAIRIVQAEVPV--FL------------LSKRIMSLDMGLLMA 359 (591)
Q Consensus 295 ~~~~i~~l~~~L~~~~~~~-ilL~GppGvGKT~la~~lA~~l~~~~~p~--~~------------~~~~~~~ld~~~l~~ 359 (591)
+++.++.+...+..++.++ ++|+||+|+|||++|+.+|+.+.+..... .. ....++.++...
T Consensus 7 ~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~--- 83 (334)
T 1a5t_A 7 LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEK--- 83 (334)
T ss_dssp GHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCT---
T ss_pred hHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccc---
Confidence 5677888888888777666 79999999999999999999986543110 00 012244443321
Q ss_pred cccccchHHHHHHHHHHHHHh----cCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCC--cEEEEecCChh
Q 007723 360 GAKERGELEARVTTLISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG--ELQCIASTTQD 433 (591)
Q Consensus 360 g~~~~g~~~~~i~~i~~~~~~----~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g--~v~lI~att~~ 433 (591)
+....+ .+.++.+++.+.. .+..|+||||+|.| +.+.+|.|+..+++. ++++|++|+..
T Consensus 84 ~~~~~~--i~~ir~l~~~~~~~~~~~~~kvviIdead~l-------------~~~a~naLLk~lEep~~~~~~Il~t~~~ 148 (334)
T 1a5t_A 84 GKNTLG--VDAVREVTEKLNEHARLGGAKVVWVTDAALL-------------TDAAANALLKTLEEPPAETWFFLATREP 148 (334)
T ss_dssp TCSSBC--HHHHHHHHHHTTSCCTTSSCEEEEESCGGGB-------------CHHHHHHHHHHHTSCCTTEEEEEEESCG
T ss_pred cCCCCC--HHHHHHHHHHHhhccccCCcEEEEECchhhc-------------CHHHHHHHHHHhcCCCCCeEEEEEeCCh
Confidence 001111 2335666665542 35789999999999 567889999999853 57777776654
Q ss_pred HHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhh
Q 007723 434 EHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497 (591)
Q Consensus 434 e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i 497 (591)
. .+.+++++||..+.+.+|+.++..++|.... .+++++++.++.++.+.+
T Consensus 149 ~-----~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~---------~~~~~~~~~l~~~s~G~~ 198 (334)
T 1a5t_A 149 E-----RLLATLRSRCRLHYLAPPPEQYAVTWLSREV---------TMSQDALLAALRLSAGSP 198 (334)
T ss_dssp G-----GSCHHHHTTSEEEECCCCCHHHHHHHHHHHC---------CCCHHHHHHHHHHTTTCH
T ss_pred H-----hCcHHHhhcceeeeCCCCCHHHHHHHHHHhc---------CCCHHHHHHHHHHcCCCH
Confidence 2 4679999999999999999999888885432 678999999999886653
No 79
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.53 E-value=9.6e-14 Score=142.51 Aligned_cols=220 Identities=10% Similarity=0.032 Sum_probs=145.3
Q ss_pred CcHHHHHHHHHHHHhcCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhccccccchHHHHHHH
Q 007723 294 GRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTT 373 (591)
Q Consensus 294 G~~~~i~~l~~~L~~~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~~~~g~~~~~i~~ 373 (591)
|+++.++.|...+..++.+++||+||||+|||++|+++++.+.. ... ....++.++... ...+ .+.++.
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~--~~~--~~~d~~~l~~~~-----~~~~--id~ir~ 69 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEK--FPP--KASDVLEIDPEG-----ENIG--IDDIRT 69 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHT--SCC--CTTTEEEECCSS-----SCBC--HHHHHH
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCch--hhc--cCCCEEEEcCCc-----CCCC--HHHHHH
Confidence 67889999999998877677899999999999999999986421 111 133456665431 1112 223566
Q ss_pred HHHHHHh----cCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCC--cEEEEecCChhHHHhhhcccHHHHc
Q 007723 374 LISEIQK----SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG--ELQCIASTTQDEHRTQFEKDKALAR 447 (591)
Q Consensus 374 i~~~~~~----~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g--~v~lI~att~~e~~~~~~~d~aL~~ 447 (591)
+++.+.. .+..|+||||+|.| +.+.+|.|++.|+++ ++++|++|+.. ..+.+++++
T Consensus 70 li~~~~~~p~~~~~kvviIdead~l-------------t~~a~naLLk~LEep~~~t~fIl~t~~~-----~kl~~tI~S 131 (305)
T 2gno_A 70 IKDFLNYSPELYTRKYVIVHDCERM-------------TQQAANAFLKALEEPPEYAVIVLNTRRW-----HYLLPTIKS 131 (305)
T ss_dssp HHHHHTSCCSSSSSEEEEETTGGGB-------------CHHHHHHTHHHHHSCCTTEEEEEEESCG-----GGSCHHHHT
T ss_pred HHHHHhhccccCCceEEEeccHHHh-------------CHHHHHHHHHHHhCCCCCeEEEEEECCh-----HhChHHHHc
Confidence 7766643 34689999999999 667899999999863 67777776553 246799999
Q ss_pred cCcceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhhhcCCCcHHHHHHHHHHhhHhh-----hhhh
Q 007723 448 RFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAH-----IELF 522 (591)
Q Consensus 448 Rf~~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i~~~~lp~~ai~lld~a~a~~~-----~~~~ 522 (591)
| .+.+.+|+.+++.+.|.... .++++++ .++.+ -+++|+.++........ +..+
T Consensus 132 R--~~~f~~l~~~~i~~~L~~~~---------~i~~~~~----~~~~g------~~~~al~~l~~~~~~~~~l~~~~~~~ 190 (305)
T 2gno_A 132 R--VFRVVVNVPKEFRDLVKEKI---------GDLWEEL----PLLER------DFKTALEAYKLGAEKLSGLMESLKVL 190 (305)
T ss_dssp T--SEEEECCCCHHHHHHHHHHH---------TTHHHHC----GGGGT------CHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred e--eEeCCCCCHHHHHHHHHHHh---------CCCHHHH----HHHCC------CHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9 89999999999999887654 2566555 22222 25567777654332111 1112
Q ss_pred ccchhhhhhhhcCChH-H--HHHHHHHHhhcchHHHHhhchhhHhh
Q 007723 523 KRKKEQQTCILSKPPD-D--YWQEIRTVQAMHEVVQGSRLKYDDVV 565 (591)
Q Consensus 523 ~~~~~~~i~~l~~~~~-~--~~~~~~~~~~~~d~~~a~~~~~~~~~ 565 (591)
. ..+.|..+...+. . -.+....++..+|+.+|..+.++...
T Consensus 191 ~--~~~~v~~~~~~~~~~~~~v~~l~~ai~~~~~~~a~~~~~~l~~ 234 (305)
T 2gno_A 191 E--TEKLLKKVLSKGLEGYLACRELLERFSKVESKEFFALFDQVTN 234 (305)
T ss_dssp C--HHHHTTTTTCSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHH
T ss_pred c--cHHHHHHHHccCCcchHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1 1233444444432 2 45677788999999999888777665
No 80
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.51 E-value=1.5e-13 Score=146.98 Aligned_cols=106 Identities=26% Similarity=0.322 Sum_probs=74.4
Q ss_pred CCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccC------------CcEEEEecC-----ChhHHHhhhcccHH
Q 007723 382 GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR------------GELQCIAST-----TQDEHRTQFEKDKA 444 (591)
Q Consensus 382 ~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~------------g~v~lI~at-----t~~e~~~~~~~d~a 444 (591)
+++|||+||+|.+...+.. .+.+-+...+|+.|++.++. .++.+|+++ ++. .+.|.
T Consensus 250 ~~~il~~DEidki~~~~~~-~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~------dlipe 322 (444)
T 1g41_A 250 QNGIVFIDEIDKICKKGEY-SGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPS------DLIPE 322 (444)
T ss_dssp HHCEEEEETGGGGSCCSSC-SSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGG------GSCHH
T ss_pred cCCeeeHHHHHHHhhccCC-CCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChh------hcchH
Confidence 4569999999999654321 11111223367788888864 356788876 443 24589
Q ss_pred HHccCcc-eeecCCCHHHHHHHHH----HHHHHHHhh-----cCCCCcHHHHHHHHHHhH
Q 007723 445 LARRFQP-VLISEPSQEDAVRILL----GLREKYEAH-----HNCKFTLEAINAAVHLSA 494 (591)
Q Consensus 445 L~~Rf~~-i~i~~p~~~e~~~iL~----~~~~~~~~~-----~~i~i~~~al~~l~~~s~ 494 (591)
|.+||.. |.++.++.++...|+. .+..+|... ..+.++++++..+++.+.
T Consensus 323 l~~R~~i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~ 382 (444)
T 1g41_A 323 LQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAF 382 (444)
T ss_dssp HHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHH
T ss_pred HhcccceeeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHH
Confidence 9999986 8999999999999994 255555432 245789999999998864
No 81
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.50 E-value=3.5e-13 Score=151.25 Aligned_cols=225 Identities=21% Similarity=0.250 Sum_probs=142.9
Q ss_pred ccccccCCCCccCCcHHHHHHHHHHHHhcCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCcc--------ccCceEEEe
Q 007723 281 TARASEELIDPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVF--------LLSKRIMSL 352 (591)
Q Consensus 281 ~~~~r~~~~~~vvG~~~~i~~l~~~L~~~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~--------~~~~~~~~l 352 (591)
..+++|..|++++|++..++.+...+... .+++|+||||||||+++++|+..+........ .....+..+
T Consensus 32 ~~~~rp~~l~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~ 109 (604)
T 3k1j_A 32 EIEVPEKLIDQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTV 109 (604)
T ss_dssp GSCCCSSHHHHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEE
T ss_pred cccccccccceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEE
Confidence 46789999999999999998888877654 68999999999999999999997743221000 000000000
Q ss_pred ehhh---------------------------------hh------ccccccchHHHHHHHHH------------------
Q 007723 353 DMGL---------------------------------LM------AGAKERGELEARVTTLI------------------ 375 (591)
Q Consensus 353 d~~~---------------------------------l~------~g~~~~g~~~~~i~~i~------------------ 375 (591)
.... ++ .+.....+.......++
T Consensus 110 p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g~~~~g~~ 189 (604)
T 3k1j_A 110 PACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQSGGLGTPAH 189 (604)
T ss_dssp ETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC----CCCCGG
T ss_pred ecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhcCCcccccc
Confidence 0000 00 00000000000000111
Q ss_pred -----HHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCC-----------------------cEEEE
Q 007723 376 -----SEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-----------------------ELQCI 427 (591)
Q Consensus 376 -----~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g-----------------------~v~lI 427 (591)
..+..+.+++|||||++.| ...+++.|+..|+.+ ++++|
T Consensus 190 ~~i~~g~~~~a~~gvL~LDEi~~l-------------~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI 256 (604)
T 3k1j_A 190 ERVEPGMIHRAHKGVLFIDEIATL-------------SLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLV 256 (604)
T ss_dssp GGEECCHHHHTTTSEEEETTGGGS-------------CHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEE
T ss_pred ccccCceeeecCCCEEEEechhhC-------------CHHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEE
Confidence 1122356779999999999 567888888877632 46799
Q ss_pred ecCChhHHHhhhcccHHHHccCcc--eeecCC-----CHHHHHHHHHHHHHHHHhh-cCCCCcHHHHHHHHHHhHHhhhc
Q 007723 428 ASTTQDEHRTQFEKDKALARRFQP--VLISEP-----SQEDAVRILLGLREKYEAH-HNCKFTLEAINAAVHLSARYISD 499 (591)
Q Consensus 428 ~att~~e~~~~~~~d~aL~~Rf~~--i~i~~p-----~~~e~~~iL~~~~~~~~~~-~~i~i~~~al~~l~~~s~r~i~~ 499 (591)
++||++.+ ..++++|.+||.. +.+..+ ..+....+++.+...+... ....++++++..+++++.|+...
T Consensus 257 ~atn~~~~---~~l~~~l~~R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~ 333 (604)
T 3k1j_A 257 AAGNLDTV---DKMHPALRSRIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGR 333 (604)
T ss_dssp EEECHHHH---HHSCHHHHHHHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCS
T ss_pred EecCHHHH---hhcCHHHHHHhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhcc
Confidence 99999743 3578999999963 333322 3455666665555544332 34689999999999999887766
Q ss_pred CC----CcHHHHHHHHHHhhHhhhhhhc
Q 007723 500 RY----LPDKAIDLVDEAGSRAHIELFK 523 (591)
Q Consensus 500 ~~----lp~~ai~lld~a~a~~~~~~~~ 523 (591)
+. .++...+++..|.+.++..+..
T Consensus 334 r~~l~~~~R~l~~llr~A~~~A~~~~~~ 361 (604)
T 3k1j_A 334 KGHLTLRLRDLGGIVRAAGDIAVKKGKK 361 (604)
T ss_dssp TTEEECCHHHHHHHHHHHHHHHHHTTCS
T ss_pred ccccccCHHHHHHHHHHHHHHHHhcCcc
Confidence 54 4778889999988766655443
No 82
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.50 E-value=3e-14 Score=164.56 Aligned_cols=170 Identities=25% Similarity=0.325 Sum_probs=131.9
Q ss_pred cccCCCCccCCcHHHHHHHHHHHHh-------------cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEE
Q 007723 284 ASEELIDPVIGRETEIQRIIQILCR-------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIM 350 (591)
Q Consensus 284 ~r~~~~~~vvG~~~~i~~l~~~L~~-------------~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~ 350 (591)
..+-.|++++|++++++.|.+.+.. ..+.+++|+||||||||++|++|+..+ +..++
T Consensus 198 ~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l----------~~~~i 267 (806)
T 1ypw_A 198 LNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET----------GAFFF 267 (806)
T ss_dssp SSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT----------TCEEE
T ss_pred cCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHc----------CCcEE
Confidence 4456889999999999998887754 334679999999999999999999876 56778
Q ss_pred EeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhccccc----CCcEEE
Q 007723 351 SLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG----RGELQC 426 (591)
Q Consensus 351 ~ld~~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le----~g~v~l 426 (591)
.++...+.. .+.|+.+..++.+|..+....+.++||||++.+...+....+ .....+.+.|+..++ +..+++
T Consensus 268 ~v~~~~l~~--~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~--~~~~~~~~~Ll~ll~g~~~~~~v~v 343 (806)
T 1ypw_A 268 LINGPEIMS--KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHG--EVERRIVSQLLTLMDGLKQRAHVIV 343 (806)
T ss_dssp EEEHHHHSS--SSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCS--HHHHHHHHHHHHHHHSSCTTSCCEE
T ss_pred EEEchHhhh--hhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccc--hHHHHHHHHHHHHhhhhcccccEEE
Confidence 888877763 467889999999999998888899999999999766432111 112334455555443 567899
Q ss_pred EecCChhHHHhhhcccHHHHc--cCc-ceeecCCCHHHHHHHHHHHHHH
Q 007723 427 IASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLREK 472 (591)
Q Consensus 427 I~att~~e~~~~~~~d~aL~~--Rf~-~i~i~~p~~~e~~~iL~~~~~~ 472 (591)
|++|+..+ .+++++.+ ||. .+.+..|+.+++.+|++.+..+
T Consensus 344 I~atn~~~-----~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~ 387 (806)
T 1ypw_A 344 MAATNRPN-----SIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN 387 (806)
T ss_dssp EEECSCTT-----TSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTT
T ss_pred ecccCCch-----hcCHHHhcccccccccccCCCCHHHHHHHHHHHHhc
Confidence 99998853 57788888 896 5899999999999999766554
No 83
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.48 E-value=1.7e-13 Score=159.84 Aligned_cols=183 Identities=20% Similarity=0.260 Sum_probs=129.3
Q ss_pred CccCCcHHHHHHHHHHHHhcC---------CCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhcc
Q 007723 290 DPVIGRETEIQRIIQILCRRT---------KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAG 360 (591)
Q Consensus 290 ~~vvG~~~~i~~l~~~L~~~~---------~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g 360 (591)
+.++|+++.++.+...+.+.. ..+++|+||||||||++|++|+..+.+. +..++.++++.+...
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~-------~~~~i~i~~~~~~~~ 630 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT-------EEAMIRIDMTEYMEK 630 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSS-------GGGEEEECTTTCCSS
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC-------CCcEEEEechhccch
Confidence 468999999999988876532 1368999999999999999999998543 345677777654321
Q ss_pred --------c--cccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCC--------
Q 007723 361 --------A--KERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-------- 422 (591)
Q Consensus 361 --------~--~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g-------- 422 (591)
. .+.|.-+ ...+...+....+.|||||||+.+ ..++++.|+.+++.+
T Consensus 631 ~~~s~l~g~~~~~~G~~~--~g~l~~~~~~~~~~vl~lDEi~~l-------------~~~~~~~Ll~~l~~~~~~~~~g~ 695 (854)
T 1qvr_A 631 HAVSRLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILFDEIEKA-------------HPDVFNILLQILDDGRLTDSHGR 695 (854)
T ss_dssp GGGGGC----------------CHHHHHHHCSSEEEEESSGGGS-------------CHHHHHHHHHHHTTTEECCSSSC
T ss_pred hHHHHHcCCCCCCcCccc--cchHHHHHHhCCCeEEEEeccccc-------------CHHHHHHHHHHhccCceECCCCC
Confidence 0 0111110 122333444566789999999998 778999999999865
Q ss_pred -----cEEEEecCChhH---------------HHhh------hcccHHHHccCc-ceeecCCCHHHHHHHHHHHHHHHHh
Q 007723 423 -----ELQCIASTTQDE---------------HRTQ------FEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEA 475 (591)
Q Consensus 423 -----~v~lI~att~~e---------------~~~~------~~~d~aL~~Rf~-~i~i~~p~~~e~~~iL~~~~~~~~~ 475 (591)
++++|++||... .... -.+.++|.+||. .+.+.+|+.+++..|+...+.++..
T Consensus 696 ~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~ 775 (854)
T 1qvr_A 696 TVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRA 775 (854)
T ss_dssp CEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHH
T ss_pred EeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 456899998621 1111 124688999995 6788888999999999887776543
Q ss_pred hc-----CCCCcHHHHHHHHHHhH
Q 007723 476 HH-----NCKFTLEAINAAVHLSA 494 (591)
Q Consensus 476 ~~-----~i~i~~~al~~l~~~s~ 494 (591)
.. .+.++++++++++.++-
T Consensus 776 ~~~~~~~~~~~~~~a~~~L~~~~~ 799 (854)
T 1qvr_A 776 RLAEKRISLELTEAAKDFLAERGY 799 (854)
T ss_dssp HHHTTTCEEEECHHHHHHHHHHHC
T ss_pred HHHhCCceEEECHHHHHHHHHcCC
Confidence 22 35789999999998764
No 84
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.46 E-value=4.2e-14 Score=129.02 Aligned_cols=136 Identities=15% Similarity=0.046 Sum_probs=93.4
Q ss_pred ccCCcHHHHHHHHHHHHh--cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhccccccchHH
Q 007723 291 PVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELE 368 (591)
Q Consensus 291 ~vvG~~~~i~~l~~~L~~--~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~~~~g~~~ 368 (591)
.++|++..++++.+.+.+ ....+++|+||||||||++|+++++..... +..++ ++++.+... ..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~-------~~~~v-~~~~~~~~~----~~-- 67 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNA-------QGEFV-YRELTPDNA----PQ-- 67 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTT-------TSCCE-EEECCTTTS----SC--
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCcc-------CCCEE-EECCCCCcc----hh--
Confidence 579999999999988765 566789999999999999999999865332 34556 776655432 11
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhccccc--CCcEEEEecCChhHHH--hhhcccHH
Q 007723 369 ARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG--RGELQCIASTTQDEHR--TQFEKDKA 444 (591)
Q Consensus 369 ~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le--~g~v~lI~att~~e~~--~~~~~d~a 444 (591)
....+. ...+++|||||++.+ ..+.+..|+..+. ...+++|++||.+... ......+.
T Consensus 68 --~~~~~~---~a~~g~l~ldei~~l-------------~~~~q~~Ll~~l~~~~~~~~~I~~t~~~~~~~~~~~~~~~~ 129 (145)
T 3n70_A 68 --LNDFIA---LAQGGTLVLSHPEHL-------------TREQQYHLVQLQSQEHRPFRLIGIGDTSLVELAASNHIIAE 129 (145)
T ss_dssp --HHHHHH---HHTTSCEEEECGGGS-------------CHHHHHHHHHHHHSSSCSSCEEEEESSCHHHHHHHSCCCHH
T ss_pred --hhcHHH---HcCCcEEEEcChHHC-------------CHHHHHHHHHHHhhcCCCEEEEEECCcCHHHHHHcCCCCHH
Confidence 222333 345679999999999 5666777777664 3457888888865322 12245678
Q ss_pred HHccCcceeecCCC
Q 007723 445 LARRFQPVLISEPS 458 (591)
Q Consensus 445 L~~Rf~~i~i~~p~ 458 (591)
|..||..+.+..|+
T Consensus 130 L~~rl~~~~i~lPp 143 (145)
T 3n70_A 130 LYYCFAMTQIACLP 143 (145)
T ss_dssp HHHHHHHHEEECCC
T ss_pred HHHHhcCCEEeCCC
Confidence 88888765555553
No 85
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.43 E-value=7.8e-15 Score=169.49 Aligned_cols=170 Identities=20% Similarity=0.307 Sum_probs=127.2
Q ss_pred ccCCCCccCCcHHHHHHHHHHHHh-------------cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEE
Q 007723 285 SEELIDPVIGRETEIQRIIQILCR-------------RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMS 351 (591)
Q Consensus 285 r~~~~~~vvG~~~~i~~l~~~L~~-------------~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ 351 (591)
..-.|++++|.++..+.+.+.+.. ....+++|+||||||||++|+++|..+ +..++.
T Consensus 472 ~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~----------~~~~i~ 541 (806)
T 1ypw_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFIS 541 (806)
T ss_dssp CCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHH----------TCCCCC
T ss_pred ccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHh----------CCCEEE
Confidence 345788999999988888876542 234679999999999999999999988 344556
Q ss_pred eehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCC-CCccHHHHHhhccccc----CCcEEE
Q 007723 352 LDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGN-KGTGLDISNLLKPSLG----RGELQC 426 (591)
Q Consensus 352 ld~~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~-~~~~~~~~n~L~~~le----~g~v~l 426 (591)
++.+.+. .++.|+.+..++.+|+.+....++||||||||.+........+. .+....+.+.|+..|+ ...+++
T Consensus 542 v~~~~l~--~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~v 619 (806)
T 1ypw_A 542 IKGPELL--TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFI 619 (806)
T ss_dssp CCCSSST--TCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBC
T ss_pred EechHhh--hhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEE
Confidence 6666655 34677778889999999988888999999999997654321100 0112345667776664 356788
Q ss_pred EecCChhHHHhhhcccHHHHc--cCc-ceeecCCCHHHHHHHHHHHHH
Q 007723 427 IASTTQDEHRTQFEKDKALAR--RFQ-PVLISEPSQEDAVRILLGLRE 471 (591)
Q Consensus 427 I~att~~e~~~~~~~d~aL~~--Rf~-~i~i~~p~~~e~~~iL~~~~~ 471 (591)
|+|||..+ .+|+++.| ||. .|.++.|+.+++.+|++....
T Consensus 620 I~tTN~~~-----~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~ 662 (806)
T 1ypw_A 620 IGATNRPD-----IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLR 662 (806)
T ss_dssp CCCCBSCG-----GGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTS
T ss_pred EEecCCcc-----cCCHHHhCccccCceeecCCCCHHHHHHHHHHHhc
Confidence 89888753 47899999 998 699999999999999976553
No 86
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.42 E-value=3.2e-14 Score=129.54 Aligned_cols=131 Identities=16% Similarity=0.196 Sum_probs=90.9
Q ss_pred ccCCcHHHHHHHHHHHHh--cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhccccccchHH
Q 007723 291 PVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELE 368 (591)
Q Consensus 291 ~vvG~~~~i~~l~~~L~~--~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~~~~g~~~ 368 (591)
+++|+++.++++.+.+.. ....+++|+||||||||++|+++++.. . +++.+++..+....
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~----------~-~~~~~~~~~~~~~~------- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG----------T-PWVSPARVEYLIDM------- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT----------S-CEECCSSTTHHHHC-------
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC----------C-CeEEechhhCChHh-------
Confidence 579999999998887765 566789999999999999999998754 1 56667765543211
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccC---CcEEEEecCChhHHH-hhhcccHH
Q 007723 369 ARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR---GELQCIASTTQDEHR-TQFEKDKA 444 (591)
Q Consensus 369 ~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~---g~v~lI~att~~e~~-~~~~~d~a 444 (591)
...++. ...+++|||||++.+ ..+.++.|...++. ..+++|++||.+... ..- +++.
T Consensus 67 --~~~~~~---~a~~~~l~lDei~~l-------------~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~~~~~~~~-~~~~ 127 (143)
T 3co5_A 67 --PMELLQ---KAEGGVLYVGDIAQY-------------SRNIQTGITFIIGKAERCRVRVIASCSYAAGSDGIS-CEEK 127 (143)
T ss_dssp --HHHHHH---HTTTSEEEEEECTTC-------------CHHHHHHHHHHHHHHTTTTCEEEEEEEECTTTC--C-HHHH
T ss_pred --hhhHHH---hCCCCeEEEeChHHC-------------CHHHHHHHHHHHHhCCCCCEEEEEecCCCHHHHHhC-ccHH
Confidence 233333 345679999999999 56677778777763 458899998865311 111 5577
Q ss_pred HHccCcceeecCCC
Q 007723 445 LARRFQPVLISEPS 458 (591)
Q Consensus 445 L~~Rf~~i~i~~p~ 458 (591)
|..||..+.+..|+
T Consensus 128 L~~rl~~~~i~lPp 141 (143)
T 3co5_A 128 LAGLFSESVVRIPP 141 (143)
T ss_dssp HHHHSSSEEEEECC
T ss_pred HHHHhcCcEEeCCC
Confidence 88898766555553
No 87
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.38 E-value=6.4e-13 Score=144.87 Aligned_cols=214 Identities=13% Similarity=0.092 Sum_probs=129.1
Q ss_pred ccCCcHHHHHHHHHHHHhcCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhccccccchHHHH
Q 007723 291 PVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEAR 370 (591)
Q Consensus 291 ~vvG~~~~i~~l~~~L~~~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~~~~g~~~~~ 370 (591)
.++|+++.++.+...+.. +.+++|+||||||||++|++++..+.. ..|.....+.+. ..+.++ |.. .+.....
T Consensus 23 ~ivGq~~~i~~l~~al~~--~~~VLL~GpPGtGKT~LAraLa~~l~~-~~~f~~~~~~~~--t~~dL~-G~~-~~~~~~~ 95 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALS--GESVFLLGPPGIAKSLIARRLKFAFQN-ARAFEYLMTRFS--TPEEVF-GPL-SIQALKD 95 (500)
T ss_dssp TCSSCHHHHHHHHHHHHH--TCEEEEECCSSSSHHHHHHHGGGGBSS-CCEEEEECCTTC--CHHHHH-CCB-C------
T ss_pred hhHHHHHHHHHHHHHHhc--CCeeEeecCchHHHHHHHHHHHHHHhh-hhHHHHHHHhcC--CHHHhc-Ccc-cHHHHhh
Confidence 489999999988877765 468999999999999999999987622 111111111110 112222 210 0000000
Q ss_pred HHHHHHHHHh---cCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCCcE------------EEEecCChhHH
Q 007723 371 VTTLISEIQK---SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGEL------------QCIASTTQDEH 435 (591)
Q Consensus 371 i~~i~~~~~~---~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g~v------------~lI~att~~e~ 435 (591)
...+..... ..+.|||||||+.+ ....++.|+..|+.+.+ ++|++||+.+
T Consensus 96 -~g~~~~~~~g~l~~~~IL~IDEI~r~-------------~~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~lp- 160 (500)
T 3nbx_X 96 -EGRYERLTSGYLPEAEIVFLDEIWKA-------------GPAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELP- 160 (500)
T ss_dssp -----CBCCTTSGGGCSEEEEESGGGC-------------CHHHHHHHHHHHHSSEEECSSSEEECCCCEEEEEESSCC-
T ss_pred -chhHHhhhccCCCcceeeeHHhHhhh-------------cHHHHHHHHHHHHHHhccCCCCcCCcchhhhhhccccCC-
Confidence 011110100 12458999999988 67788888888864421 3477776422
Q ss_pred HhhhcccHHHHccCcc-eeecCCCH-HHHHHHHHHHHH-------------------HHHhhcCCCCcHHHHHHHHHHhH
Q 007723 436 RTQFEKDKALARRFQP-VLISEPSQ-EDAVRILLGLRE-------------------KYEAHHNCKFTLEAINAAVHLSA 494 (591)
Q Consensus 436 ~~~~~~d~aL~~Rf~~-i~i~~p~~-~e~~~iL~~~~~-------------------~~~~~~~i~i~~~al~~l~~~s~ 494 (591)
......+++.+||.. +.++.|+. ++...|+..... ......++.++++++++++++..
T Consensus 161 -e~~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v~e~i~~l~~ 239 (500)
T 3nbx_X 161 -EADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVFELIFMLRQ 239 (500)
T ss_dssp -CTTCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHHHHHHHHHHH
T ss_pred -CccccHHHHHHHHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHHHHHHHHHHH
Confidence 112234799999974 88899986 666777754221 11123478899999999998875
Q ss_pred Hhhhc----CCCcHHHHHHHHHHhhHhhhhhhccchh
Q 007723 495 RYISD----RYLPDKAIDLVDEAGSRAHIELFKRKKE 527 (591)
Q Consensus 495 r~i~~----~~lp~~ai~lld~a~a~~~~~~~~~~~~ 527 (591)
..-.. ..-++..+.++..|.+.+.+.+.+....
T Consensus 240 ~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~ 276 (500)
T 3nbx_X 240 QLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAP 276 (500)
T ss_dssp HHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCG
T ss_pred HhhcCCCCCccchhHHHHHHHHHHHHHhhcCCccccc
Confidence 31111 1135567888888888888877664433
No 88
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.35 E-value=8.9e-15 Score=163.44 Aligned_cols=248 Identities=10% Similarity=0.095 Sum_probs=140.9
Q ss_pred CCccCCcHHHHHHHHHHHHhcC-----------CCCCeEecCCCCcHHHHHHHHHHHHHhCCCCcc--ccCceEEEeehh
Q 007723 289 IDPVIGRETEIQRIIQILCRRT-----------KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVF--LLSKRIMSLDMG 355 (591)
Q Consensus 289 ~~~vvG~~~~i~~l~~~L~~~~-----------~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~--~~~~~~~~ld~~ 355 (591)
...++|++...+.+...+.... ..|+||+||||||||++|+++++.+.....+.. .....+......
T Consensus 294 ~~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~ 373 (595)
T 3f9v_A 294 APSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVR 373 (595)
T ss_dssp SSTTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSS
T ss_pred cchhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeee
Confidence 3468999987777655554432 128999999999999999999987632211100 000111110000
Q ss_pred hhhcccc--ccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCC-----------
Q 007723 356 LLMAGAK--ERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG----------- 422 (591)
Q Consensus 356 ~l~~g~~--~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g----------- 422 (591)
....|.. ..| . +..+.++||||||++.+ ..+.++.|+..|+.+
T Consensus 374 ~~~~g~~~~~~G--------~---l~~A~~gil~IDEid~l-------------~~~~q~~Ll~~le~~~i~i~~~g~~~ 429 (595)
T 3f9v_A 374 EKGTGEYYLEAG--------A---LVLADGGIAVIDEIDKM-------------RDEDRVAIHEAMEQQTVSIAKAGIVA 429 (595)
T ss_dssp GGGTSSCSEEEC--------H---HHHHSSSEECCTTTTCC-------------CSHHHHHHHHHHHSSSEEEESSSSEE
T ss_pred ccccccccccCC--------e---eEecCCCcEEeehhhhC-------------CHhHhhhhHHHHhCCEEEEecCCcEE
Confidence 0011110 011 1 11245689999999998 556778888877654
Q ss_pred ----cEEEEecCChhH--HHh------hhcccHHHHccCc-c-eeecCCCHHHHHHHHHHHHHHHHh-hcCCCCcHHHHH
Q 007723 423 ----ELQCIASTTQDE--HRT------QFEKDKALARRFQ-P-VLISEPSQEDAVRILLGLREKYEA-HHNCKFTLEAIN 487 (591)
Q Consensus 423 ----~v~lI~att~~e--~~~------~~~~d~aL~~Rf~-~-i~i~~p~~~e~~~iL~~~~~~~~~-~~~i~i~~~al~ 487 (591)
.+.+|+|+|+.. |.. .+.++++|.+||+ . +....|+.+ ...+++++...... ...-.++.+.+.
T Consensus 430 ~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l~~~~l~ 508 (595)
T 3f9v_A 430 KLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQ-DRELANYILDVHSGKSTKNIIDIDTLR 508 (595)
T ss_dssp EECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHH-HHHHHHHHHTTTCCCSSSSTTCCTTTH
T ss_pred EecCceEEEEEcCCcCCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHH-HHHHHHHHHHHhhccccccCCCHHHHH
Confidence 346899999863 110 1268899999996 3 444555555 66665554432210 112356677777
Q ss_pred HHHHHhHHhhhcCCCcHHHHHHHHHHhhHhhhhhhc-----cchh-hhhhhhcCChHH-HHHHHHHHhhcchHHHHhhch
Q 007723 488 AAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFK-----RKKE-QQTCILSKPPDD-YWQEIRTVQAMHEVVQGSRLK 560 (591)
Q Consensus 488 ~l~~~s~r~i~~~~lp~~ai~lld~a~a~~~~~~~~-----~~~~-~~i~~l~~~~~~-~~~~~~~~~~~~d~~~a~~~~ 560 (591)
.++.++..++.. .+++.+.+.|.+.....+-.... .+.. .....+.+...+ +.......|+.+|+++|..+.
T Consensus 509 ~~i~~ar~~~~p-~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~l~ 587 (595)
T 3f9v_A 509 KYIAYARKYVTP-KITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAINIM 587 (595)
T ss_dssp HHHHHHHHHHCC-CCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHH
Confidence 777777766433 46677888887776433222111 1111 111122222222 334445568889999998876
Q ss_pred hh
Q 007723 561 YD 562 (591)
Q Consensus 561 ~~ 562 (591)
..
T Consensus 588 ~~ 589 (595)
T 3f9v_A 588 RL 589 (595)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 89
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.32 E-value=1.1e-10 Score=124.02 Aligned_cols=216 Identities=14% Similarity=0.112 Sum_probs=133.0
Q ss_pred CccCCcHHHHHHHHHHH-Hh------cCCCCCeE--ecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhh---
Q 007723 290 DPVIGRETEIQRIIQIL-CR------RTKNNPIL--LGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLL--- 357 (591)
Q Consensus 290 ~~vvG~~~~i~~l~~~L-~~------~~~~~ilL--~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l--- 357 (591)
+.++||+++++.+...+ .. ....+++| +||+|+|||++++.+++.+..... ....+..++++++...
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAA-KEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHH-HTTCCEEEEEEEGGGCCSH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHh-ccCCceeEEEEECCCCCCH
Confidence 57899999999999888 43 24456788 999999999999999988743100 0001344556664211
Q ss_pred ---h----c--ccc--ccc-hHHHHHHHHHHHHHh-cCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhccccc----
Q 007723 358 ---M----A--GAK--ERG-ELEARVTTLISEIQK-SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLG---- 420 (591)
Q Consensus 358 ---~----~--g~~--~~g-~~~~~i~~i~~~~~~-~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le---- 420 (591)
. . |.. ..+ .....+..+...+.. ..+.||||||+|.+..... ...+....|...+.
T Consensus 101 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~-------~~~~~l~~l~~~~~~~~~ 173 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPR-------IAAEDLYTLLRVHEEIPS 173 (412)
T ss_dssp HHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTT-------SCHHHHHHHHTHHHHSCC
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccC-------cchHHHHHHHHHHHhccc
Confidence 0 0 110 011 122223333333332 4578999999999953210 02334443333332
Q ss_pred -C--CcEEEEecCChhHHHhhhccc---HHHHccCc-ceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHh
Q 007723 421 -R--GELQCIASTTQDEHRTQFEKD---KALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLS 493 (591)
Q Consensus 421 -~--g~v~lI~att~~e~~~~~~~d---~aL~~Rf~-~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s 493 (591)
. ..+.+|++++..++.. .++ +.+.+||. .+.+.+++.++..+++....... .....+++++++.+++.+
T Consensus 174 ~~~~~~v~lI~~~~~~~~~~--~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~--~~~~~~~~~~~~~i~~~~ 249 (412)
T 1w5s_A 174 RDGVNRIGFLLVASDVRALS--YMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELG--LRDTVWEPRHLELISDVY 249 (412)
T ss_dssp TTSCCBEEEEEEEEETHHHH--HHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHH--BCTTSCCHHHHHHHHHHH
T ss_pred CCCCceEEEEEEeccccHHH--HHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhc--CCCCCCChHHHHHHHHHH
Confidence 3 5788888876544321 234 66777775 38999999999999997765533 123468899999999998
Q ss_pred HHhhhcCCCcHHHHHHHHHHhhHh
Q 007723 494 ARYISDRYLPDKAIDLVDEAGSRA 517 (591)
Q Consensus 494 ~r~i~~~~lp~~ai~lld~a~a~~ 517 (591)
.+.......|..++.+++.++..+
T Consensus 250 ~~~~~~~G~p~~~~~l~~~a~~~a 273 (412)
T 1w5s_A 250 GEDKGGDGSARRAIVALKMACEMA 273 (412)
T ss_dssp CGGGTSCCCHHHHHHHHHHHHHHH
T ss_pred HHhccCCCcHHHHHHHHHHHHHHH
Confidence 744311134777888888776443
No 90
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.19 E-value=2.7e-11 Score=127.56 Aligned_cols=197 Identities=18% Similarity=0.269 Sum_probs=127.5
Q ss_pred ccCCcHHHHHHHHHHHHh--cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhh--------cc
Q 007723 291 PVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM--------AG 360 (591)
Q Consensus 291 ~vvG~~~~i~~l~~~L~~--~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~--------~g 360 (591)
.++|.+..+..+...+.+ ....+++++|++||||+++|+.++..... ...++.+|++.+- .|
T Consensus 130 ~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s~r--------~~~fv~vnc~~~~~~~~~~~lfg 201 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYSGR--------KGAFVDLNCASIPQELAESELFG 201 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHHCC--------CSCEEEEESSSSCTTTHHHHHHE
T ss_pred cccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhccc--------cCCcEEEEcccCChHHHHHHhcC
Confidence 578888888777766544 45567899999999999999999987632 1227788877542 11
Q ss_pred ccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCC-------------cEEEE
Q 007723 361 AKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-------------ELQCI 427 (591)
Q Consensus 361 ~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g-------------~v~lI 427 (591)
. ..|.+....+.-...+..+.+++||||||+.| ..++|..|+++++.+ .+++|
T Consensus 202 ~-~~g~~tga~~~~~g~~~~a~~gtlfldei~~l-------------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii 267 (368)
T 3dzd_A 202 H-EKGAFTGALTRKKGKLELADQGTLFLDEVGEL-------------DQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVI 267 (368)
T ss_dssp E-CSCSSSSCCCCEECHHHHTTTSEEEEETGGGS-------------CHHHHHHHHHHHHHSEECCBTCCCBEECCCEEE
T ss_pred c-cccccCCcccccCChHhhcCCCeEEecChhhC-------------CHHHHHHHHHHHHhCCcccCCCCcceeeeeEEE
Confidence 1 01111000000000122356789999999999 778899999888744 46799
Q ss_pred ecCChhHHHh--hhcccHHHHccCcceeecCCCH----HHHHHHHHHHHHHHHhhcC---CCCcHHHHHHHHHHh-HHhh
Q 007723 428 ASTTQDEHRT--QFEKDKALARRFQPVLISEPSQ----EDAVRILLGLREKYEAHHN---CKFTLEAINAAVHLS-ARYI 497 (591)
Q Consensus 428 ~att~~e~~~--~~~~d~aL~~Rf~~i~i~~p~~----~e~~~iL~~~~~~~~~~~~---i~i~~~al~~l~~~s-~r~i 497 (591)
++||.+.... .-...+.|..|+..+.+..|+. +++..++..+..++...++ +.+++++++.+..+. .+.+
T Consensus 268 ~at~~~l~~~v~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpGNv 347 (368)
T 3dzd_A 268 SATNKNLEEEIKKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQEWKGNV 347 (368)
T ss_dssp EEESSCHHHHHHTTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTCCCTTHH
T ss_pred EecCCCHHHHHHcCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCcHH
Confidence 9998764321 1223467888998766666654 5667777777776655444 468999998888775 3332
Q ss_pred hcCCCcHHHHHHHHHHhh
Q 007723 498 SDRYLPDKAIDLVDEAGS 515 (591)
Q Consensus 498 ~~~~lp~~ai~lld~a~a 515 (591)
+ ....+++.++.
T Consensus 348 r------eL~n~i~~~~~ 359 (368)
T 3dzd_A 348 R------ELKNLIERAVI 359 (368)
T ss_dssp H------HHHHHHHHHHH
T ss_pred H------HHHHHHHHHHH
Confidence 2 23445665553
No 91
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.16 E-value=5.1e-10 Score=115.76 Aligned_cols=183 Identities=19% Similarity=0.188 Sum_probs=113.4
Q ss_pred CccCCcHHHHHHHHHHHHhcCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhh-----------
Q 007723 290 DPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM----------- 358 (591)
Q Consensus 290 ~~vvG~~~~i~~l~~~L~~~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~----------- 358 (591)
+.++||+++++.|.+.+... +.++|+||+|+|||+|++.+++.. + ++.+++....
T Consensus 12 ~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~----------~--~~~~~~~~~~~~~~~~~~~~~ 77 (350)
T 2qen_A 12 EDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER----------P--GILIDCRELYAERGHITREEL 77 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS----------S--EEEEEHHHHHHTTTCBCHHHH
T ss_pred HhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc----------C--cEEEEeecccccccCCCHHHH
Confidence 46899999999999988763 678999999999999999998764 1 3334432210
Q ss_pred --------c----------------ccc---ccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHH
Q 007723 359 --------A----------------GAK---ERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDI 411 (591)
Q Consensus 359 --------~----------------g~~---~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~ 411 (591)
. |.. ....+...+..+...+...++.+|||||+|.+..... ....+.
T Consensus 78 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~------~~~~~~ 151 (350)
T 2qen_A 78 IKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGS------RGGKEL 151 (350)
T ss_dssp HHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTT------TTTHHH
T ss_pred HHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCc------cchhhH
Confidence 0 000 0012333333322222223489999999999943100 012345
Q ss_pred HHhhcccccC-CcEEEEecCChhHH-Hhh---hcccHHHHccCc-ceeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHH
Q 007723 412 SNLLKPSLGR-GELQCIASTTQDEH-RTQ---FEKDKALARRFQ-PVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEA 485 (591)
Q Consensus 412 ~n~L~~~le~-g~v~lI~att~~e~-~~~---~~~d~aL~~Rf~-~i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~a 485 (591)
...|...++. ..+.+|.++..... ... .....++..|+. .+.+.+.+.++..+++..... ..+..++++.
T Consensus 152 ~~~L~~~~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~----~~~~~~~~~~ 227 (350)
T 2qen_A 152 LALFAYAYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFR----EVNLDVPENE 227 (350)
T ss_dssp HHHHHHHHHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHH----TTTCCCCHHH
T ss_pred HHHHHHHHHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHH----HcCCCCCHHH
Confidence 5555554432 46777776655432 221 122233444554 799999999999998865433 3367788998
Q ss_pred HHHHHHHhHHh
Q 007723 486 INAAVHLSARY 496 (591)
Q Consensus 486 l~~l~~~s~r~ 496 (591)
+..+...+.++
T Consensus 228 ~~~i~~~tgG~ 238 (350)
T 2qen_A 228 IEEAVELLDGI 238 (350)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHhCCC
Confidence 98888888654
No 92
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.13 E-value=4.6e-11 Score=126.69 Aligned_cols=184 Identities=18% Similarity=0.256 Sum_probs=122.5
Q ss_pred CCccCCcHHHHHHHHHHHHh--cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhh--------
Q 007723 289 IDPVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM-------- 358 (591)
Q Consensus 289 ~~~vvG~~~~i~~l~~~L~~--~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~-------- 358 (591)
+..++|.+..++.+.+.+.+ ....+++|+|++|||||++|+.++...... +.+++.+|++.+.
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~-------~~~fv~v~~~~~~~~~~~~el 208 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRS-------KEPFVALNVASIPRDIFEAEL 208 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHSTTT-------TSCEEEEETTTSCHHHHHHHH
T ss_pred chhhhhccHHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHhcCCC-------CCCeEEEecCCCCHHHHHHHh
Confidence 45689998888888877665 445678999999999999999999875332 4567788876542
Q ss_pred ccccccchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCC-------------cEE
Q 007723 359 AGAKERGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-------------ELQ 425 (591)
Q Consensus 359 ~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g-------------~v~ 425 (591)
.|.. .|.+..........+..+.+++||||||+.| ..+.+..|+.+++.+ +++
T Consensus 209 fg~~-~g~~tga~~~~~g~~~~a~~gtlfldei~~l-------------~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~r 274 (387)
T 1ny5_A 209 FGYE-KGAFTGAVSSKEGFFELADGGTLFLDEIGEL-------------SLEAQAKLLRVIESGKFYRLGGRKEIEVNVR 274 (387)
T ss_dssp HCBC-TTSSTTCCSCBCCHHHHTTTSEEEEESGGGC-------------CHHHHHHHHHHHHHSEECCBTCCSBEECCCE
T ss_pred cCCC-CCCCCCcccccCCceeeCCCcEEEEcChhhC-------------CHHHHHHHHHHHhcCcEEeCCCCceeeccEE
Confidence 1210 1111100000001122356789999999999 778888888887643 568
Q ss_pred EEecCChhHHHh--hhcccHHHHccCcceeecCCCH----HHHHHHHHHHHHHHHhhcC---CCCcHHHHHHHHHHh
Q 007723 426 CIASTTQDEHRT--QFEKDKALARRFQPVLISEPSQ----EDAVRILLGLREKYEAHHN---CKFTLEAINAAVHLS 493 (591)
Q Consensus 426 lI~att~~e~~~--~~~~d~aL~~Rf~~i~i~~p~~----~e~~~iL~~~~~~~~~~~~---i~i~~~al~~l~~~s 493 (591)
+|++||.+-... .-...+.|..|+..+.+..|+. +++..++..+..++...++ ..+++++++.+..+.
T Consensus 275 ii~at~~~l~~~~~~g~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~~ 351 (387)
T 1ny5_A 275 ILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYP 351 (387)
T ss_dssp EEEEESSCHHHHHHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHSC
T ss_pred EEEeCCCCHHHHHHcCCccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCC
Confidence 999998753221 1234577888888777777765 5666666666666654444 348899988887663
No 93
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=99.12 E-value=1.8e-10 Score=119.99 Aligned_cols=219 Identities=11% Similarity=-0.027 Sum_probs=138.9
Q ss_pred HHHHHhcCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhccccccchHHHHHHHHHHHHH---
Q 007723 303 IQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ--- 379 (591)
Q Consensus 303 ~~~L~~~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~--- 379 (591)
...+..+-.+..+|+||+|+||++.++.+++.+.+.+.. .+.++.++ +. .+ ++.+++.+.
T Consensus 10 ~~~l~~~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~------~~---~~----~~~l~~~~~~~p 72 (343)
T 1jr3_D 10 RAQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFE----EHHTFSID------PN---TD----WNAIFSLCQAMS 72 (343)
T ss_dssp HHHHHHCCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCC----EEEEEECC------TT---CC----HHHHHHHHHHHH
T ss_pred HHHHhcCCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCC----eeEEEEec------CC---CC----HHHHHHHhcCcC
Confidence 333443445567899999999999999999988643211 11233333 11 22 334444433
Q ss_pred -hcCCeEEEEcCcch-hhcCCCCCCCCCCccHHHHHhhcccccC---CcEEEEecCChhHHHhhhcccHHHHccCcceee
Q 007723 380 -KSGDVILFIDEVHT-LIGSGTVGRGNKGTGLDISNLLKPSLGR---GELQCIASTTQDEHRTQFEKDKALARRFQPVLI 454 (591)
Q Consensus 380 -~~~~~ILfIDEi~~-L~~~~~~~~~~~~~~~~~~n~L~~~le~---g~v~lI~att~~e~~~~~~~d~aL~~Rf~~i~i 454 (591)
-.+..|++|||+|. + +.+.++.|+.+++. +.+.++++++.+...+...+-+++.+||..+.+
T Consensus 73 lf~~~kvvii~~~~~kl-------------~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~ 139 (343)
T 1jr3_D 73 LFASRQTLLLLLPENGP-------------NAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTC 139 (343)
T ss_dssp HCCSCEEEEEECCSSCC-------------CTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEE
T ss_pred CccCCeEEEEECCCCCC-------------ChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEe
Confidence 25678999999999 7 34567888888875 334444444433211112345889999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhhhcCCCcHHHHHHHHHHhhHhhhhhhccchhhhhhhhc
Q 007723 455 SEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYISDRYLPDKAIDLVDEAGSRAHIELFKRKKEQQTCILS 534 (591)
Q Consensus 455 ~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i~~~~lp~~ai~lld~a~a~~~~~~~~~~~~~~i~~l~ 534 (591)
.+++..++...+...+.. .++.+++++++.+++.+.+.+. .+...|+..+... ....... +.|.++.
T Consensus 140 ~~l~~~~l~~~l~~~~~~----~g~~i~~~a~~~l~~~~~gdl~------~~~~elekl~l~~--~~~~It~-e~V~~~~ 206 (343)
T 1jr3_D 140 QTPEQAQLPRWVAARAKQ----LNLELDDAANQVLCYCYEGNLL------ALAQALERLSLLW--PDGKLTL-PRVEQAV 206 (343)
T ss_dssp CCCCTTHHHHHHHHHHHH----TTCEECHHHHHHHHHSSTTCHH------HHHHHHHHHHHHC--TTCEECH-HHHHHHH
T ss_pred eCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHhchHHH------HHHHHHHHHHHhc--CCCCCCH-HHHHHHH
Confidence 999999988888776654 4999999999999999876644 4778888776432 1111111 2222222
Q ss_pred CC-hHHHHHHHHHHhhcchHHHHhhchhhHh
Q 007723 535 KP-PDDYWQEIRTVQAMHEVVQGSRLKYDDV 564 (591)
Q Consensus 535 ~~-~~~~~~~~~~~~~~~d~~~a~~~~~~~~ 564 (591)
.. .+...+....++..+|...|..+.+...
T Consensus 207 ~~~~~~~if~l~~ai~~~d~~~al~~l~~l~ 237 (343)
T 1jr3_D 207 NDAAHFTPFHWVDALLMGKSKRALHILQQLR 237 (343)
T ss_dssp HHHCCCCHHHHHHHHTTSCHHHHHHHHTSST
T ss_pred hhhhcCCHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 11 1123456667888888888877765543
No 94
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=99.10 E-value=3.2e-11 Score=128.32 Aligned_cols=253 Identities=15% Similarity=0.060 Sum_probs=121.9
Q ss_pred CCCccCCcHHHHHHHHHHHHhcC-----CCCCeEecCCCCcHHHHHHHH-HHHHHhCCCCccccCceEEEeehh----hh
Q 007723 288 LIDPVIGRETEIQRIIQILCRRT-----KNNPILLGESGVGKTAIAEGL-AIRIVQAEVPVFLLSKRIMSLDMG----LL 357 (591)
Q Consensus 288 ~~~~vvG~~~~i~~l~~~L~~~~-----~~~ilL~GppGvGKT~la~~l-A~~l~~~~~p~~~~~~~~~~ld~~----~l 357 (591)
++.+++|++...+.+.-.+.... .-|+||+|+||| ||.+++.+ ++.+.. .++..+.. .+
T Consensus 211 sIapI~G~e~vK~aLll~L~GG~~k~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR----------~~ft~g~~ss~~gL 279 (506)
T 3f8t_A 211 AIAPLPGAEEVGKMLALQLFSCVGKNSERLHVLLAGYPVV-CSEILHHVLDHLAPR----------GVYVDLRRTELTDL 279 (506)
T ss_dssp HHCCSTTCHHHHHHHHHHHTTCCSSGGGCCCEEEESCHHH-HHHHHHHHHHHTCSS----------EEEEEGGGCCHHHH
T ss_pred HhcccCCCHHHHHHHHHHHcCCccccCCceeEEEECCCCh-HHHHHHHHHHHhCCC----------eEEecCCCCCccCc
Confidence 34459999987655555554431 238999999999 99999999 664311 11111110 11
Q ss_pred hccccc-cchHHHHHHHHHHHHHhcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCC-----------cEE
Q 007723 358 MAGAKE-RGELEARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG-----------ELQ 425 (591)
Q Consensus 358 ~~g~~~-~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g-----------~v~ 425 (591)
...... .| +.-+- ..+..++++|+||||++.+ ....+..|+..|+.+ .+.
T Consensus 280 t~s~r~~tG-~~~~~----G~l~LAdgGvl~lDEIn~~-------------~~~~qsaLlEaMEe~~VtI~G~~lparf~ 341 (506)
T 3f8t_A 280 TAVLKEDRG-WALRA----GAAVLADGGILAVDHLEGA-------------PEPHRWALMEAMDKGTVTVDGIALNARCA 341 (506)
T ss_dssp SEEEEESSS-EEEEE----CHHHHTTTSEEEEECCTTC-------------CHHHHHHHHHHHHHSEEEETTEEEECCCE
T ss_pred eEEEEcCCC-cccCC----CeeEEcCCCeeehHhhhhC-------------CHHHHHHHHHHHhCCcEEECCEEcCCCeE
Confidence 100000 00 00000 0112356789999999999 677888999888754 478
Q ss_pred EEecCChhHHH------hhhcccHHHHccCcc--eeecCCCHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHhh
Q 007723 426 CIASTTQDEHR------TQFEKDKALARRFQP--VLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSARYI 497 (591)
Q Consensus 426 lI~att~~e~~------~~~~~d~aL~~Rf~~--i~i~~p~~~e~~~iL~~~~~~~~~~~~i~i~~~al~~l~~~s~r~i 497 (591)
+|+|+|+.+.- ..+.+.+++.+||+. +.+..|+.+...+- ..-.++.+.+...+.++++..
T Consensus 342 VIAA~NP~~~yd~~~s~~~~~Lp~alLDRFDLi~i~~d~pd~e~d~e~-----------~~~~ls~e~L~~yi~~ar~~~ 410 (506)
T 3f8t_A 342 VLAAINPGEQWPSDPPIARIDLDQDFLSHFDLIAFLGVDPRPGEPEEQ-----------DTEVPSYTLLRRYLLYAIREH 410 (506)
T ss_dssp EEEEECCCC--CCSCGGGGCCSCHHHHTTCSEEEETTC-------------------------CCHHHHHHHHHHHHHHC
T ss_pred EEEEeCcccccCCCCCccccCCChHHhhheeeEEEecCCCChhHhhcc-----------cCCCCCHHHHHHHHHHHHhcC
Confidence 99999986510 124788999999974 44566655432110 011233333444333333111
Q ss_pred hcCCCcHHHHHHHHHHhhHhhhhhh--------ccch-hhhhhhhcCChHH-HHHHHHHHhhcchHHHHhhchh-hHhhh
Q 007723 498 SDRYLPDKAIDLVDEAGSRAHIELF--------KRKK-EQQTCILSKPPDD-YWQEIRTVQAMHEVVQGSRLKY-DDVVA 566 (591)
Q Consensus 498 ~~~~lp~~ai~lld~a~a~~~~~~~--------~~~~-~~~i~~l~~~~~~-~~~~~~~~~~~~d~~~a~~~~~-~~~~~ 566 (591)
-...+++.+.+.|-......|.... ..+. ......|....++ ++......|+.+|++.|.++.. ..++.
T Consensus 411 ~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~~eDV~~Ai~L~~~Sl~~~ 490 (506)
T 3f8t_A 411 PAPELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVEPEDVDIAAELVDWYLETA 490 (506)
T ss_dssp SCCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHHHHHHT
T ss_pred CCceeCHHHHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHHHHh
Confidence 1112333333333332222111100 0000 0122233333333 4555556788888888888754 55566
Q ss_pred ccCCCcchhhccCC
Q 007723 567 SMGDTSEIVVESSL 580 (591)
Q Consensus 567 ~~~~~~~~~~~~~~ 580 (591)
..++.+...+++.+
T Consensus 491 a~dp~tg~id~~~~ 504 (506)
T 3f8t_A 491 MQIPGGDEIRISSL 504 (506)
T ss_dssp TC------------
T ss_pred cCCCCCCeEeEEec
Confidence 66666666666554
No 95
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.01 E-value=1.2e-09 Score=113.24 Aligned_cols=177 Identities=18% Similarity=0.207 Sum_probs=103.1
Q ss_pred CccCCcHHHHHHHHHHHHhcCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhh-----------
Q 007723 290 DPVIGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM----------- 358 (591)
Q Consensus 290 ~~vvG~~~~i~~l~~~L~~~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~----------- 358 (591)
+.++||+++++.|.. +.. +.++|+||+|+|||+|++.+++.+. ..++.+++....
T Consensus 13 ~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 78 (357)
T 2fna_A 13 KDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELN----------LPYIYLDLRKFEERNYISYKDFL 78 (357)
T ss_dssp GGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHT----------CCEEEEEGGGGTTCSCCCHHHHH
T ss_pred HHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcC----------CCEEEEEchhhccccCCCHHHHH
Confidence 468999999999998 765 5789999999999999999998762 123344433210
Q ss_pred ---------------------c---cccccc---h------HHHHHHHHHHHHHhc--CCeEEEEcCcchhhcCCCCCCC
Q 007723 359 ---------------------A---GAKERG---E------LEARVTTLISEIQKS--GDVILFIDEVHTLIGSGTVGRG 403 (591)
Q Consensus 359 ---------------------~---g~~~~g---~------~~~~i~~i~~~~~~~--~~~ILfIDEi~~L~~~~~~~~~ 403 (591)
. |....+ . ....+..+++.+.+. ++.+|||||+|.+....
T Consensus 79 ~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~----- 153 (357)
T 2fna_A 79 LELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLR----- 153 (357)
T ss_dssp HHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCT-----
T ss_pred HHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccC-----
Confidence 0 000000 0 001133444444432 48899999999995320
Q ss_pred CCCccHHHHHhhcccccC-CcEEEEecCChhHH-Hhh---hcccHHHHccC-cceeecCCCHHHHHHHHHHHHHHHHhhc
Q 007723 404 NKGTGLDISNLLKPSLGR-GELQCIASTTQDEH-RTQ---FEKDKALARRF-QPVLISEPSQEDAVRILLGLREKYEAHH 477 (591)
Q Consensus 404 ~~~~~~~~~n~L~~~le~-g~v~lI~att~~e~-~~~---~~~d~aL~~Rf-~~i~i~~p~~~e~~~iL~~~~~~~~~~~ 477 (591)
..+....|....+. ..+.+|.+++.... ... ......+..|+ ..+.+.+.+.++..+++.......
T Consensus 154 ----~~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~---- 225 (357)
T 2fna_A 154 ----GVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEA---- 225 (357)
T ss_dssp ----TCCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHH----
T ss_pred ----chhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHc----
Confidence 11123333333321 35667766665431 211 12223355565 479999999999999987654432
Q ss_pred CCCCcHHHHHHHHHHhHH
Q 007723 478 NCKFTLEAINAAVHLSAR 495 (591)
Q Consensus 478 ~i~i~~~al~~l~~~s~r 495 (591)
+...++. ..+...+.+
T Consensus 226 ~~~~~~~--~~i~~~t~G 241 (357)
T 2fna_A 226 DIDFKDY--EVVYEKIGG 241 (357)
T ss_dssp TCCCCCH--HHHHHHHCS
T ss_pred CCCCCcH--HHHHHHhCC
Confidence 4444433 555555544
No 96
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.90 E-value=1.4e-09 Score=104.08 Aligned_cols=102 Identities=16% Similarity=0.189 Sum_probs=63.9
Q ss_pred cccccccCCCCccCCcHH----HHHHHHHHHHhcC----CCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEE
Q 007723 280 LTARASEELIDPVIGRET----EIQRIIQILCRRT----KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMS 351 (591)
Q Consensus 280 l~~~~r~~~~~~vvG~~~----~i~~l~~~L~~~~----~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ 351 (591)
+...+++.+|+++++.+. .+..+..++.... ..+++|+||+|||||+++++++..+... +..++.
T Consensus 15 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~-------~~~~~~ 87 (202)
T 2w58_A 15 MPREILRASLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKR-------NVSSLI 87 (202)
T ss_dssp SCGGGGCCCTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTT-------TCCEEE
T ss_pred CCHHHHcCCHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc-------CCeEEE
Confidence 344556778999987543 4455555655432 1689999999999999999999988543 345666
Q ss_pred eehhhhhcccc---ccchHHHHHHHHHHHHHhcCCeEEEEcCcchh
Q 007723 352 LDMGLLMAGAK---ERGELEARVTTLISEIQKSGDVILFIDEVHTL 394 (591)
Q Consensus 352 ld~~~l~~g~~---~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L 394 (591)
+++..+..... ..+. +..++..+... .+|||||++..
T Consensus 88 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~--~~lilDei~~~ 127 (202)
T 2w58_A 88 VYVPELFRELKHSLQDQT----MNEKLDYIKKV--PVLMLDDLGAE 127 (202)
T ss_dssp EEHHHHHHHHHHC---CC----CHHHHHHHHHS--SEEEEEEECCC
T ss_pred EEhHHHHHHHHHHhccch----HHHHHHHhcCC--CEEEEcCCCCC
Confidence 66655432110 0111 12233333333 49999999775
No 97
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.87 E-value=1.8e-09 Score=101.39 Aligned_cols=103 Identities=17% Similarity=0.217 Sum_probs=61.7
Q ss_pred cccccCCCCccCCc----HHHHHHHHHHHHh---cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeeh
Q 007723 282 ARASEELIDPVIGR----ETEIQRIIQILCR---RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (591)
Q Consensus 282 ~~~r~~~~~~vvG~----~~~i~~l~~~L~~---~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~ 354 (591)
+++++.+|+++++. ...++.+.+.+.. ..+.+++|+||+|+||||++++++..+.... +..++.++.
T Consensus 2 ~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~------g~~~~~~~~ 75 (180)
T 3ec2_A 2 KRYWNANLDTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKK------GIRGYFFDT 75 (180)
T ss_dssp CSCTTCCSSSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHS------CCCCCEEEH
T ss_pred chhhhCccccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHc------CCeEEEEEH
Confidence 56788899999873 3445555555443 3457789999999999999999999885211 233444555
Q ss_pred hhhhccccccchHHH-HHHHHHHHHHhcCCeEEEEcCcchh
Q 007723 355 GLLMAGAKERGELEA-RVTTLISEIQKSGDVILFIDEVHTL 394 (591)
Q Consensus 355 ~~l~~g~~~~g~~~~-~i~~i~~~~~~~~~~ILfIDEi~~L 394 (591)
..+..... ..+.. ....++..+ ..+.+|||||++..
T Consensus 76 ~~~~~~~~--~~~~~~~~~~~~~~~--~~~~llilDE~~~~ 112 (180)
T 3ec2_A 76 KDLIFRLK--HLMDEGKDTKFLKTV--LNSPVLVLDDLGSE 112 (180)
T ss_dssp HHHHHHHH--HHHHHTCCSHHHHHH--HTCSEEEEETCSSS
T ss_pred HHHHHHHH--HHhcCchHHHHHHHh--cCCCEEEEeCCCCC
Confidence 54431100 00000 000122222 24569999999854
No 98
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.78 E-value=8.1e-09 Score=130.69 Aligned_cols=140 Identities=13% Similarity=0.182 Sum_probs=94.0
Q ss_pred CCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhccccccchHHHHHHHHHHHHH----------
Q 007723 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQ---------- 379 (591)
Q Consensus 310 ~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~---------- 379 (591)
.+.++||+||||||||++|+.+.... .+..++.++.++.... ..+...++...
T Consensus 1266 ~~~~vLL~GPpGtGKT~la~~~l~~~---------~~~~~~~infsa~ts~--------~~~~~~i~~~~~~~~~~~g~~ 1328 (2695)
T 4akg_A 1266 SKRGIILCGPPGSGKTMIMNNALRNS---------SLYDVVGINFSKDTTT--------EHILSALHRHTNYVTTSKGLT 1328 (2695)
T ss_dssp HTCEEEEECSTTSSHHHHHHHHHHSC---------SSCEEEEEECCTTCCH--------HHHHHHHHHHBCCEEETTTEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhcC---------CCCceEEEEeecCCCH--------HHHHHHHHHHhhhccccCCcc
Confidence 45799999999999999996665432 1455666665543311 11233333221
Q ss_pred -----hcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCC--------------cEEEEecCChhHHHhhhc
Q 007723 380 -----KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG--------------ELQCIASTTQDEHRTQFE 440 (591)
Q Consensus 380 -----~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g--------------~v~lI~att~~e~~~~~~ 440 (591)
...+.||||||++.-... .+ +.....+.|++.++.+ ++++|+|||+.....-..
T Consensus 1329 ~~P~~~gk~~VlFiDEinmp~~d-~y------g~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~ 1401 (2695)
T 4akg_A 1329 LLPKSDIKNLVLFCDEINLPKLD-KY------GSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIP 1401 (2695)
T ss_dssp EEEBSSSSCEEEEEETTTCSCCC-SS------SCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCC
T ss_pred ccCCCCCceEEEEeccccccccc-cc------CchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCcc
Confidence 123469999999864221 11 2345566777776642 378999999863112356
Q ss_pred ccHHHHccCcceeecCCCHHHHHHHHHHHHHHH
Q 007723 441 KDKALARRFQPVLISEPSQEDAVRILLGLREKY 473 (591)
Q Consensus 441 ~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~ 473 (591)
++++|.|||..+.++.|+.+++..|+..+....
T Consensus 1402 l~~rllRrf~vi~i~~P~~~~l~~I~~~il~~~ 1434 (2695)
T 4akg_A 1402 MSERFTRHAAILYLGYPSGKSLSQIYEIYYKAI 1434 (2695)
T ss_dssp CCHHHHTTEEEEECCCCTTTHHHHHHHHHHHHH
T ss_pred CChhhhheeeEEEeCCCCHHHHHHHHHHHHHHH
Confidence 899999999999999999999999998877654
No 99
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=98.71 E-value=2.1e-08 Score=91.07 Aligned_cols=64 Identities=31% Similarity=0.491 Sum_probs=61.1
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhhhcccchhhHHHHHhCCCHHHHHHHHHHHh
Q 007723 170 PFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRL 233 (591)
Q Consensus 170 ~~S~~~k~vL~~A~~~A~~~g~~~I~~ehLLlall~~~~~~a~~iL~~~gv~~~~l~~~i~~~l 233 (591)
.||+.++++|+.|..+|+++|+.+|++||||+||++++++.+.++|+++|++++.+++.+...+
T Consensus 7 ~~T~~a~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~~iL~~~gvd~~~l~~~l~~~l 70 (145)
T 3fes_A 7 RFTQRAKKAIDLAFESAKSLGHNIVGSEHILLGLLREEEGIAAKVLSKVGFTEAYLEGKIVDME 70 (145)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHCSSHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCChHHHHHHHcCCCHHHHHHHHHHHH
Confidence 5999999999999999999999999999999999999999999999999999999999887766
No 100
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=98.69 E-value=3.3e-08 Score=89.95 Aligned_cols=64 Identities=28% Similarity=0.457 Sum_probs=60.8
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhhhcccchhhHHHHHhCCCHHHHHHHHHHHh
Q 007723 170 PFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRL 233 (591)
Q Consensus 170 ~~S~~~k~vL~~A~~~A~~~g~~~I~~ehLLlall~~~~~~a~~iL~~~gv~~~~l~~~i~~~l 233 (591)
.||+.++++|+.|..+|+++|+.+|++||||+||++++++.+.++|+++|++.+.+++.+...+
T Consensus 6 ~~t~~~~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~~iL~~~gv~~~~l~~~l~~~l 69 (146)
T 3fh2_A 6 RFTDRARRVIVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESMGISLDAVRQEVEEII 69 (146)
T ss_dssp GBCHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCSHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHhCCCChHHHHHHHcCCCHHHHHHHHHHHh
Confidence 4899999999999999999999999999999999998899999999999999999999887766
No 101
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=98.65 E-value=5.6e-08 Score=88.34 Aligned_cols=64 Identities=19% Similarity=0.301 Sum_probs=61.0
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhhhcccchhhHHHHHhCCCHHHHHHHHHHHh
Q 007723 170 PFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRL 233 (591)
Q Consensus 170 ~~S~~~k~vL~~A~~~A~~~g~~~I~~ehLLlall~~~~~~a~~iL~~~gv~~~~l~~~i~~~l 233 (591)
.||+.++++|+.|..+|+++|+.+|+++|||+||+.++++.+.++|+++|++.+.++..+...+
T Consensus 5 ~~t~~~~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~~~~~~~iL~~~g~~~~~l~~~l~~~l 68 (148)
T 1khy_A 5 RLTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSVSPLLTSAGINAGQLRTDINQAL 68 (148)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHTCTTCSHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHcCCCchHHHHHHHcCCCHHHHHHHHHHHH
Confidence 5999999999999999999999999999999999999999999999999999999999887766
No 102
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.63 E-value=5.7e-08 Score=99.62 Aligned_cols=100 Identities=13% Similarity=0.220 Sum_probs=60.4
Q ss_pred cccccCCCCccCCcH----HHHHHHHHHHHhc---CCCCCeEecCCCCcHHHHHHHHHHHHH-hCCCCccccCceEEEee
Q 007723 282 ARASEELIDPVIGRE----TEIQRIIQILCRR---TKNNPILLGESGVGKTAIAEGLAIRIV-QAEVPVFLLSKRIMSLD 353 (591)
Q Consensus 282 ~~~r~~~~~~vvG~~----~~i~~l~~~L~~~---~~~~ilL~GppGvGKT~la~~lA~~l~-~~~~p~~~~~~~~~~ld 353 (591)
..+++.+|+++++.+ ..+..+.+++... ...+++|+||||||||+|+.+++..+. .. +.+++.++
T Consensus 116 ~~~~~~tfd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~-------g~~v~~~~ 188 (308)
T 2qgz_A 116 KSYRHIHLSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKK-------GVSTTLLH 188 (308)
T ss_dssp GGGGSCCGGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHS-------CCCEEEEE
T ss_pred HHHHhCCHhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhc-------CCcEEEEE
Confidence 344556788887533 3444555566553 257899999999999999999999986 43 34566666
Q ss_pred hhhhhccc---cccchHHHHHHHHHHHHHhcCCeEEEEcCcchh
Q 007723 354 MGLLMAGA---KERGELEARVTTLISEIQKSGDVILFIDEVHTL 394 (591)
Q Consensus 354 ~~~l~~g~---~~~g~~~~~i~~i~~~~~~~~~~ILfIDEi~~L 394 (591)
+..++... ...+. +..++..+. ...+|||||++..
T Consensus 189 ~~~l~~~l~~~~~~~~----~~~~~~~~~--~~~lLiiDdig~~ 226 (308)
T 2qgz_A 189 FPSFAIDVKNAISNGS----VKEEIDAVK--NVPVLILDDIGAE 226 (308)
T ss_dssp HHHHHHHHHCCCC--------CCTTHHHH--TSSEEEEETCCC-
T ss_pred HHHHHHHHHHHhccch----HHHHHHHhc--CCCEEEEcCCCCC
Confidence 65543211 11111 112223332 2349999999765
No 103
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=98.61 E-value=6.2e-08 Score=90.41 Aligned_cols=63 Identities=19% Similarity=0.180 Sum_probs=60.3
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhhhcccchhhHHHHHhCCCHHHHHHHHHHHh
Q 007723 170 PFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRL 233 (591)
Q Consensus 170 ~~S~~~k~vL~~A~~~A~~~g~~~I~~ehLLlall~~~~~~a~~iL~~~gv~~~~l~~~i~~~l 233 (591)
.||+.++++|+.|..+|+++|+.+|++||||+||++++++.+.++|+++|+|.+.+++.+. .+
T Consensus 24 kfT~~a~~aL~~A~~~A~~~~h~~I~~EHLLlaLL~~~~~~a~~iL~~~gvd~~~l~~~l~-~l 86 (171)
T 3zri_A 24 KLNAQSKLALEQAASLCIERQHPEVTLEHYLDVLLDNPLSDVRLVLKQAGLEVDQVKQAIA-ST 86 (171)
T ss_dssp HBCHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHTTCTTSHHHHHHHHTTCCHHHHHHHHH-HH
T ss_pred HcCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHH-HH
Confidence 4899999999999999999999999999999999999999999999999999999999887 66
No 104
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=98.60 E-value=7.5e-08 Score=87.78 Aligned_cols=64 Identities=30% Similarity=0.414 Sum_probs=60.8
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhhhcccchhhHHHHHhCCCHHHHHHHHHHHh
Q 007723 170 PFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRL 233 (591)
Q Consensus 170 ~~S~~~k~vL~~A~~~A~~~g~~~I~~ehLLlall~~~~~~a~~iL~~~gv~~~~l~~~i~~~l 233 (591)
.||+.++++|+.|..+|+++|+.+|+++|||+||+.++++.+.++|+++|++.+.++..+...+
T Consensus 5 ~~t~~~~~al~~A~~~A~~~~h~~i~~eHlLlaLl~~~~~~~~~iL~~~g~~~~~l~~~l~~~l 68 (150)
T 2y1q_A 5 RFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVESLI 68 (150)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHCSSHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hhCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCCHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 5999999999999999999999999999999999999999999999999999999998887765
No 105
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.55 E-value=3.1e-08 Score=90.50 Aligned_cols=106 Identities=14% Similarity=0.148 Sum_probs=63.7
Q ss_pred CCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEc
Q 007723 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFID 389 (591)
Q Consensus 310 ~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfID 389 (591)
....++|+||+|+|||+|+++++..+... +.+++.++...+... .+ .....+|+||
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~-------g~~~~~~~~~~~~~~------------~~-----~~~~~lLilD 90 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEA-------GKNAAYIDAASMPLT------------DA-----AFEAEYLAVD 90 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTT-------TCCEEEEETTTSCCC------------GG-----GGGCSEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhc-------CCcEEEEcHHHhhHH------------HH-----HhCCCEEEEe
Confidence 45678999999999999999999988531 445666665544321 01 1235699999
Q ss_pred CcchhhcCCCCCCCCCCccHHHHHhhcccccCCcEEEEecCChhHHHhhhcccHHHHccCc
Q 007723 390 EVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQ 450 (591)
Q Consensus 390 Ei~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g~v~lI~att~~e~~~~~~~d~aL~~Rf~ 450 (591)
|++.+... ....+.+.+....+++..++|.+++.... ..... +.|.+||.
T Consensus 91 E~~~~~~~---------~~~~l~~li~~~~~~g~~~iiits~~~p~-~l~~~-~~L~SRl~ 140 (149)
T 2kjq_A 91 QVEKLGNE---------EQALLFSIFNRFRNSGKGFLLLGSEYTPQ-QLVIR-EDLRTRMA 140 (149)
T ss_dssp STTCCCSH---------HHHHHHHHHHHHHHHTCCEEEEEESSCTT-TSSCC-HHHHHHGG
T ss_pred CccccChH---------HHHHHHHHHHHHHHcCCcEEEEECCCCHH-Hcccc-HHHHHHHh
Confidence 99987211 12334444444445554423334442210 12223 89999996
No 106
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=98.44 E-value=2.6e-07 Score=83.41 Aligned_cols=62 Identities=19% Similarity=0.255 Sum_probs=57.5
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhhhcccchhhHHHHHhCCCHHHHHHHHHHHhh
Q 007723 171 FSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRLQ 234 (591)
Q Consensus 171 ~S~~~k~vL~~A~~~A~~~g~~~I~~ehLLlall~~~~~~a~~iL~~~gv~~~~l~~~i~~~l~ 234 (591)
||+.++++|+.|..+|+++|+.+|+++|||+||+.+++ +.++|+++|++.+.++..+...+.
T Consensus 2 ~t~~~~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~~--~~~iL~~~g~~~~~l~~~l~~~l~ 63 (143)
T 1k6k_A 2 LNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPS--AREALEACSVDLVALRQELEAFIE 63 (143)
T ss_dssp BCHHHHHHHHHHHHHHHHHTBSEECHHHHHHHHTTCHH--HHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHcCch--HHHHHHHcCCCHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999997664 899999999999999998877763
No 107
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.35 E-value=3.8e-07 Score=87.03 Aligned_cols=39 Identities=21% Similarity=0.207 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHh-cCCCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 297 TEIQRIIQILCR-RTKNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 297 ~~i~~l~~~L~~-~~~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
.-+..+..++.. +.+++++|+||||||||++|.++++.+
T Consensus 43 ~f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 43 TFLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 345566666654 234579999999999999999999987
No 108
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.30 E-value=2.4e-07 Score=118.13 Aligned_cols=157 Identities=13% Similarity=0.190 Sum_probs=96.8
Q ss_pred cCCcHHHHHH--HHHHHHhcCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhccccccchHHH
Q 007723 292 VIGRETEIQR--IIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEA 369 (591)
Q Consensus 292 vvG~~~~i~~--l~~~L~~~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~~~~g~~~~ 369 (591)
+|-.-+.++. ++..+. ..+.++||+||||||||+++..+...+ .+..++.++.++-... .
T Consensus 1284 lVPT~DTvR~~~ll~~ll-~~~~pvLL~GptGtGKT~li~~~L~~l---------~~~~~~~infS~~Tta--------~ 1345 (3245)
T 3vkg_A 1284 VIPTVDTTRHVDVLHAWL-SEHRPLILCGPPGSGKTMTLTSTLRAF---------PDFEVVSLNFSSATTP--------E 1345 (3245)
T ss_dssp CCCCHHHHHHHHHHHHHH-HTTCCCEEESSTTSSHHHHHHHHGGGC---------TTEEEEEECCCTTCCH--------H
T ss_pred eecchHHHHHHHHHHHHH-HCCCcEEEECCCCCCHHHHHHHHHHhC---------CCCceEEEEeeCCCCH--------H
Confidence 4554444432 333332 356789999999999998876544322 1345566665543211 1
Q ss_pred HHHHHHHHH----H------------hcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCC-----------
Q 007723 370 RVTTLISEI----Q------------KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRG----------- 422 (591)
Q Consensus 370 ~i~~i~~~~----~------------~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g----------- 422 (591)
.+...++.. . ..+..|+||||++.-. ...+ |.......|+++++.+
T Consensus 1346 ~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~VlFiDDiNmp~-~D~y------GtQ~~ielLrqlld~~g~yd~~~~~~~ 1418 (3245)
T 3vkg_A 1346 LLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVVFCDEINLPS-TDKY------GTQRVITFIRQMVEKGGFWRTSDHTWI 1418 (3245)
T ss_dssp HHHHHHHHHEEEEECTTSCEEEEESSTTCEEEEEETTTTCCC-CCTT------SCCHHHHHHHHHHHHSEEEETTTTEEE
T ss_pred HHHHHHhhcceEEeccCCCcccCCCcCCceEEEEecccCCCC-cccc------ccccHHHHHHHHHHcCCeEECCCCeEE
Confidence 122222210 0 0223699999998642 1111 2344666777666522
Q ss_pred ---cEEEEecCChhHHHhhhcccHHHHccCcceeecCCCHHHHHHHHHHHHHHH
Q 007723 423 ---ELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKY 473 (591)
Q Consensus 423 ---~v~lI~att~~e~~~~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL~~~~~~~ 473 (591)
.+++|+|+++........++++|.|||..+.++.|+.+++..|+..+...+
T Consensus 1419 ~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F~vi~i~~ps~esL~~If~til~~~ 1472 (3245)
T 3vkg_A 1419 KLDKIQFVGACNPPTDAGRVQLTHRFLRHAPILLVDFPSTSSLTQIYGTFNRAL 1472 (3245)
T ss_dssp EESSEEEEEEECCTTSTTCCCCCHHHHTTCCEEECCCCCHHHHHHHHHHHHHHH
T ss_pred EecCeEEEEEcCCCCCCCCccCCHHHHhhceEEEeCCCCHHHHHHHHHHHHHHH
Confidence 468999998863223356889999999999999999999999987765544
No 109
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.26 E-value=4.5e-06 Score=90.21 Aligned_cols=60 Identities=15% Similarity=0.337 Sum_probs=42.8
Q ss_pred hhcccccccCCCCccC-CcHHHHHHHHHHHHhcCCCCCeEecCCCCcHHHHHHHHHHHHHhC
Q 007723 278 VDLTARASEELIDPVI-GRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQA 338 (591)
Q Consensus 278 ~~l~~~~r~~~~~~vv-G~~~~i~~l~~~L~~~~~~~ilL~GppGvGKT~la~~lA~~l~~~ 338 (591)
.+|..+|+|..|+.+- +|...+..+...+.... .+++|.|+||||||+++..++..+...
T Consensus 12 ~~~~~~~~p~~~~~Ln~~Q~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l~~~ 72 (459)
T 3upu_A 12 SGLVPRGSHMTFDDLTEGQKNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEALIST 72 (459)
T ss_dssp ---------CCSSCCCHHHHHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CCCccccCCCccccCCHHHHHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 5788999999999987 77778888877776544 488999999999999999999988654
No 110
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.10 E-value=7.1e-06 Score=104.30 Aligned_cols=124 Identities=14% Similarity=0.220 Sum_probs=88.7
Q ss_pred CCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEc
Q 007723 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFID 389 (591)
Q Consensus 310 ~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfID 389 (591)
...+.++.||+|||||++++.+|+.+ +..++.+++..-+. ...+..++..+...+ ..+++|
T Consensus 644 ~~~~~~l~GpaGtGKTe~vk~LA~~l----------g~~~v~~nc~e~ld--------~~~lg~~~~g~~~~G-aw~~~D 704 (2695)
T 4akg_A 644 QKYGGCFFGPAGTGKTETVKAFGQNL----------GRVVVVFNCDDSFD--------YQVLSRLLVGITQIG-AWGCFD 704 (2695)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHTT----------TCCCEEEETTSSCC--------HHHHHHHHHHHHHHT-CEEEEE
T ss_pred hCCCCcccCCCCCCcHHHHHHHHHHh----------CCcEEEEECCCCCC--------hhHhhHHHHHHHhcC-CEeeeh
Confidence 34568899999999999999999988 66777777654321 122455565555444 688889
Q ss_pred CcchhhcCCCCCCCCCCccHHHHHhh-------cccc--------c-------CCcEEEEecCChhHHHhhhcccHHHHc
Q 007723 390 EVHTLIGSGTVGRGNKGTGLDISNLL-------KPSL--------G-------RGELQCIASTTQDEHRTQFEKDKALAR 447 (591)
Q Consensus 390 Ei~~L~~~~~~~~~~~~~~~~~~n~L-------~~~l--------e-------~g~v~lI~att~~e~~~~~~~d~aL~~ 447 (591)
|++++ ..++...+ ...+ . ...+.+++|.|+ .|....++.++|++
T Consensus 705 E~nr~-------------~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NP-gy~g~~eLP~~Lk~ 770 (2695)
T 4akg_A 705 EFNRL-------------DEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNP-GYNGRSELPENLKK 770 (2695)
T ss_dssp TTTSS-------------CHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECC-CSSSSCCCCHHHHT
T ss_pred hhhhc-------------ChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCC-CccCcccccHHHHh
Confidence 99998 33444333 1111 1 224567888887 46666778899999
Q ss_pred cCcceeecCCCHHHHHHHH
Q 007723 448 RFQPVLISEPSQEDAVRIL 466 (591)
Q Consensus 448 Rf~~i~i~~p~~~e~~~iL 466 (591)
||..|.+..|+.+.+.+|+
T Consensus 771 ~Fr~v~m~~Pd~~~i~ei~ 789 (2695)
T 4akg_A 771 SFREFSMKSPQSGTIAEMI 789 (2695)
T ss_dssp TEEEEECCCCCHHHHHHHH
T ss_pred heEEEEeeCCCHHHHHHHH
Confidence 9999999999999888886
No 111
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.07 E-value=3.8e-06 Score=91.07 Aligned_cols=64 Identities=30% Similarity=0.414 Sum_probs=60.5
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhhhcccchhhHHHHHhCCCHHHHHHHHHHHh
Q 007723 170 PFSISTKRVFEAAVEYSRSRGYNFIAPEHIALGLFTVDDGSAGRVLKRLGVDVNHLAAVAVSRL 233 (591)
Q Consensus 170 ~~S~~~k~vL~~A~~~A~~~g~~~I~~ehLLlall~~~~~~a~~iL~~~gv~~~~l~~~i~~~l 233 (591)
.||+.++++|+.|..+|+++||.+|+++|||+||+.++++.+.++|+++|++.+.++..+...+
T Consensus 5 ~ft~~a~~al~~A~~~A~~~~h~~v~~eHLLlaLl~~~~~~~~~iL~~~gvd~~~l~~~l~~~l 68 (468)
T 3pxg_A 5 RFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVESLI 68 (468)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSCCSHHHHHHHHHTCCHHHHHHHHHTTS
T ss_pred hhCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhccCcHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 5899999999999999999999999999999999999999999999999999999998877655
No 112
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.03 E-value=6.2e-06 Score=82.03 Aligned_cols=38 Identities=26% Similarity=0.388 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhc-C-CCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 298 EIQRIIQILCRR-T-KNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 298 ~i~~l~~~L~~~-~-~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
....+..++.+. . +++++|+||||||||+++.+||+.+
T Consensus 89 ~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 89 AASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 334466666654 3 5679999999999999999999964
No 113
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.02 E-value=6.1e-06 Score=84.17 Aligned_cols=74 Identities=18% Similarity=0.374 Sum_probs=46.0
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhccccccchHHHHHHHHHHHHHhcCCeEEEEcC
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQKSGDVILFIDE 390 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~~~~~~ILfIDE 390 (591)
...++|+||||+|||+|+..++.. .... +.++.+...+.+.. +..+.+..+..+.+.+.+.+ +||||+
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-~G~~-------VlyIs~~~eE~v~~--~~~~le~~l~~i~~~l~~~~--LLVIDs 190 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-LGGK-------DKYATVRFGEPLSG--YNTDFNVFVDDIARAMLQHR--VIVIDS 190 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-HHTT-------SCCEEEEBSCSSTT--CBCCHHHHHHHHHHHHHHCS--EEEEEC
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-CCCC-------EEEEEecchhhhhh--hhcCHHHHHHHHHHHHhhCC--EEEEec
Confidence 345689999999999999999986 2211 12222211221111 11445666666666665544 999999
Q ss_pred cchhhc
Q 007723 391 VHTLIG 396 (591)
Q Consensus 391 i~~L~~ 396 (591)
++.+..
T Consensus 191 I~aL~~ 196 (331)
T 2vhj_A 191 LKNVIG 196 (331)
T ss_dssp CTTTC-
T ss_pred cccccc
Confidence 999853
No 114
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.95 E-value=3.5e-05 Score=85.66 Aligned_cols=49 Identities=18% Similarity=0.190 Sum_probs=40.0
Q ss_pred cCCCCccCCcHHHHHHHHHHHHh--cCCCCCeEecCCCCcHHHHHHHHHHH
Q 007723 286 EELIDPVIGRETEIQRIIQILCR--RTKNNPILLGESGVGKTAIAEGLAIR 334 (591)
Q Consensus 286 ~~~~~~vvG~~~~i~~l~~~L~~--~~~~~ilL~GppGvGKT~la~~lA~~ 334 (591)
|.....+|||+.++.+|.+.+.. ...+-++|+|++|+|||+||..+++.
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 170 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRD 170 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCC
T ss_pred CCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhc
Confidence 44556799999999999999874 23345789999999999999998754
No 115
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.91 E-value=3.9e-05 Score=71.85 Aligned_cols=23 Identities=39% Similarity=0.694 Sum_probs=21.0
Q ss_pred CCeEecCCCCcHHHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l 335 (591)
.+.|+||+|+|||||++.|+..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999887
No 116
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.87 E-value=4.8e-05 Score=72.62 Aligned_cols=132 Identities=14% Similarity=0.089 Sum_probs=65.4
Q ss_pred CeEecCCCCcHHHHHHHHHHHHHhCCCCccccC-ceEEEeehhhhhcccc-----------ccch--HHHHHHHHHHHHH
Q 007723 314 PILLGESGVGKTAIAEGLAIRIVQAEVPVFLLS-KRIMSLDMGLLMAGAK-----------ERGE--LEARVTTLISEIQ 379 (591)
Q Consensus 314 ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~-~~~~~ld~~~l~~g~~-----------~~g~--~~~~i~~i~~~~~ 379 (591)
.+++|+||+|||++|..++.....-+ +. -.+ ..++..++..+..+.. ..++ ....+..++. ..
T Consensus 8 ~l~tG~pGsGKT~~a~~~~~~~~~~~-~~-~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~-~~ 84 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMVSMMANDEMFK-PD-ENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIK-KP 84 (199)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCGGGS-CC-TTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTT-SG
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhhc-cc-ccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhh-cc
Confidence 47899999999999987655432000 00 012 3343333332221110 0000 0011222211 12
Q ss_pred hcCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccCCcEEEEecCChhHHHhhhcccHHHHccCc-ceeecCCC
Q 007723 380 KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQ-PVLISEPS 458 (591)
Q Consensus 380 ~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~g~v~lI~att~~e~~~~~~~d~aL~~Rf~-~i~i~~p~ 458 (591)
...+.||||||+|.+...+..+ .+ ...+...|.. -....+.+|.+|.+. ..++.++++|+. .+.+..|.
T Consensus 85 ~~~~~vliIDEAq~l~~~~~~~---~e-~~rll~~l~~-~r~~~~~iil~tq~~-----~~l~~~lr~ri~~~~~l~~~~ 154 (199)
T 2r2a_A 85 ENIGSIVIVDEAQDVWPARSAG---SK-IPENVQWLNT-HRHQGIDIFVLTQGP-----KLLDQNLRTLVRKHYHIASNK 154 (199)
T ss_dssp GGTTCEEEETTGGGTSBCCCTT---CC-CCHHHHGGGG-TTTTTCEEEEEESCG-----GGBCHHHHTTEEEEEEEEECS
T ss_pred ccCceEEEEEChhhhccCcccc---ch-hHHHHHHHHh-cCcCCeEEEEECCCH-----HHHhHHHHHHhheEEEEcCcc
Confidence 3458899999999996543211 01 1122222221 112345666666664 257788999997 46666543
No 117
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.77 E-value=0.00015 Score=80.05 Aligned_cols=41 Identities=29% Similarity=0.306 Sum_probs=35.2
Q ss_pred CCcHHHHHHHHHHHHhc---CCCCCeEecCCCCcHHHHHHHHHH
Q 007723 293 IGRETEIQRIIQILCRR---TKNNPILLGESGVGKTAIAEGLAI 333 (591)
Q Consensus 293 vG~~~~i~~l~~~L~~~---~~~~ilL~GppGvGKT~la~~lA~ 333 (591)
+||+.+++.|.+.|... ...-+.|+|++|+|||+||+.+++
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 59999999999998765 234467999999999999999996
No 118
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.69 E-value=0.00016 Score=92.75 Aligned_cols=131 Identities=13% Similarity=0.187 Sum_probs=90.2
Q ss_pred HHHHHHHhcCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhccccccchHHHHHHHHHHHHHh
Q 007723 301 RIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGAKERGELEARVTTLISEIQK 380 (591)
Q Consensus 301 ~l~~~L~~~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~~~~g~~~~~i~~i~~~~~~ 380 (591)
.+.+.|.. ..+..+.||+|||||.+++.+|+.+ +..++.++++.-+ .+ ..+..++..+.+
T Consensus 596 tl~~Al~~--~~gg~~~GPaGtGKTet~k~La~~l----------gr~~~vfnC~~~~---d~-----~~~g~i~~G~~~ 655 (3245)
T 3vkg_A 596 TLTQALES--RMGGNPFGPAGTGKTETVKALGSQL----------GRFVLVFCCDEGF---DL-----QAMSRIFVGLCQ 655 (3245)
T ss_dssp HHHHHHHT--TCEEEEECSTTSSHHHHHHHHHHHT----------TCCEEEEECSSCC---CH-----HHHHHHHHHHHH
T ss_pred HHHHHHHh--cCCCCCCCCCCCCHHHHHHHHHHHh----------CCeEEEEeCCCCC---CH-----HHHHHHHhhHhh
Confidence 34444433 3345789999999999999999998 6667777765422 11 124555665555
Q ss_pred cCCeEEEEcCcchhhcCCCCCCCCCCccHHHHHhhccc----------------cc-------CCcEEEEecCChhHHHh
Q 007723 381 SGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPS----------------LG-------RGELQCIASTTQDEHRT 437 (591)
Q Consensus 381 ~~~~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~----------------le-------~g~v~lI~att~~e~~~ 437 (591)
. +...++||++++ ..++...+... +. ...+.++.|+|+ .|..
T Consensus 656 ~-GaW~cfDEfNrl-------------~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNp-gY~g 720 (3245)
T 3vkg_A 656 C-GAWGCFDEFNRL-------------EERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNP-GYAG 720 (3245)
T ss_dssp H-TCEEEEETTTSS-------------CHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCC-CGGG
T ss_pred c-CcEEEehhhhcC-------------CHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCC-CccC
Confidence 4 456778999998 33333322110 11 124677888887 6776
Q ss_pred hhcccHHHHccCcceeecCCCHHHHHHHH
Q 007723 438 QFEKDKALARRFQPVLISEPSQEDAVRIL 466 (591)
Q Consensus 438 ~~~~d~aL~~Rf~~i~i~~p~~~e~~~iL 466 (591)
..++...|++||..|.+..|+.+.+.+|+
T Consensus 721 r~eLP~nLk~lFr~v~m~~Pd~~~i~ei~ 749 (3245)
T 3vkg_A 721 RSNLPDNLKKLFRSMAMIKPDREMIAQVM 749 (3245)
T ss_dssp CCCSCHHHHTTEEEEECCSCCHHHHHHHH
T ss_pred cccChHHHHhhcEEEEEeCCCHHHHHHHH
Confidence 77899999999999999999999888886
No 119
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.66 E-value=5.9e-06 Score=77.96 Aligned_cols=24 Identities=17% Similarity=0.058 Sum_probs=19.9
Q ss_pred CeEecCCCCcHHHHHHHHHHHHHh
Q 007723 314 PILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 314 ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
.+++||+|+||||++..++.....
T Consensus 6 ~vi~G~~gsGKTT~ll~~~~~~~~ 29 (184)
T 2orw_A 6 TVITGPMYSGKTTELLSFVEIYKL 29 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 578999999999999777776643
No 120
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.66 E-value=0.00016 Score=86.95 Aligned_cols=50 Identities=18% Similarity=0.175 Sum_probs=40.3
Q ss_pred ccCCCCccCCcHHHHHHHHHHHHhc--CCCCCeEecCCCCcHHHHHHHHHHH
Q 007723 285 SEELIDPVIGRETEIQRIIQILCRR--TKNNPILLGESGVGKTAIAEGLAIR 334 (591)
Q Consensus 285 r~~~~~~vvG~~~~i~~l~~~L~~~--~~~~ilL~GppGvGKT~la~~lA~~ 334 (591)
-|.....++||++++++|.+.|... ..+-+.|+|++|+|||+||..+++.
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred CCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence 4455667999999999999998643 2334679999999999999988765
No 121
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.41 E-value=0.0003 Score=68.09 Aligned_cols=30 Identities=27% Similarity=0.204 Sum_probs=25.4
Q ss_pred cCCCCCeEecCCCCcHHHHHHHHHHHHHhC
Q 007723 309 RTKNNPILLGESGVGKTAIAEGLAIRIVQA 338 (591)
Q Consensus 309 ~~~~~ilL~GppGvGKT~la~~lA~~l~~~ 338 (591)
+.+.++++.|+|||||||++-.+|..+...
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~l~~~ 33 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHAQLRQ 33 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 345678999999999999999999988653
No 122
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=97.35 E-value=0.0011 Score=77.20 Aligned_cols=43 Identities=26% Similarity=0.325 Sum_probs=36.3
Q ss_pred cCCcHHHHHHHHHHHHh-cCCCCCeEecCCCCcHHHHHHHHHHH
Q 007723 292 VIGRETEIQRIIQILCR-RTKNNPILLGESGVGKTAIAEGLAIR 334 (591)
Q Consensus 292 vvG~~~~i~~l~~~L~~-~~~~~ilL~GppGvGKT~la~~lA~~ 334 (591)
.+||+.++++|.+.|.. ...+-+.|+|++|+|||+||+.+++.
T Consensus 130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 49999999999999876 33345679999999999999999863
No 123
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.29 E-value=0.00029 Score=86.13 Aligned_cols=79 Identities=14% Similarity=0.102 Sum_probs=53.7
Q ss_pred CCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhh----hh---cc---ccccch----HHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGL----LM---AG---AKERGE----LEARVTTLISE 377 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~----l~---~g---~~~~g~----~~~~i~~i~~~ 377 (591)
+.++++||||||||+||++++.+....+ .+.+.++... ++ .| .++.++ .++.++.++..
T Consensus 1083 ~~~l~~G~~g~GKT~la~~~~~~~~~~g-------~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ 1155 (1706)
T 3cmw_A 1083 RIVEIYGPESSGKTTLTLQVIAAAQREG-------KTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDAL 1155 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTT-------CCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred CEEEEEcCCCCChHHHHHHHHHHhhhcC-------CceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHH
Confidence 3489999999999999999998764432 2222223222 11 11 123334 67778777777
Q ss_pred HHhcCCeEEEEcCcchhhcC
Q 007723 378 IQKSGDVILFIDEVHTLIGS 397 (591)
Q Consensus 378 ~~~~~~~ILfIDEi~~L~~~ 397 (591)
+++....++|+|+++.|+..
T Consensus 1156 ar~~~~~~i~~d~~~al~~~ 1175 (1706)
T 3cmw_A 1156 ARSGAVDVIVVDSVAALTPK 1175 (1706)
T ss_dssp HHHTCCSEEEESCGGGCCCH
T ss_pred HHhcCCeEEEeCchHhcCcc
Confidence 77778999999999988765
No 124
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.28 E-value=0.00045 Score=85.43 Aligned_cols=81 Identities=14% Similarity=0.121 Sum_probs=52.4
Q ss_pred cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhh-------cc-------ccccchHHHHHHHH
Q 007723 309 RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM-------AG-------AKERGELEARVTTL 374 (591)
Q Consensus 309 ~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~-------~g-------~~~~g~~~~~i~~i 374 (591)
.+..+++|+||||||||+||.+++...... +.++..++....+ .| .......++.++.+
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~ea~~~-------G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~ 1497 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAAAQRE-------GKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEIC 1497 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHTT-------TCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHc-------CCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHH
Confidence 456789999999999999999998877542 3344445544221 01 00112334445555
Q ss_pred HHHHHhcCCeEEEEcCcchhhc
Q 007723 375 ISEIQKSGDVILFIDEVHTLIG 396 (591)
Q Consensus 375 ~~~~~~~~~~ILfIDEi~~L~~ 396 (591)
...++.....+||||+++.+..
T Consensus 1498 ~~lvr~~~~~lVVIDsi~al~p 1519 (2050)
T 3cmu_A 1498 DALARSGAVDVIVVDSVAALTP 1519 (2050)
T ss_dssp HHHHHHTCCSEEEESCGGGCCC
T ss_pred HHHHhcCCCCEEEEcChhHhcc
Confidence 5555667788999999987764
No 125
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.13 E-value=0.00021 Score=69.41 Aligned_cols=26 Identities=27% Similarity=0.087 Sum_probs=21.8
Q ss_pred CCeEecCCCCcHHHHHHHHHHHHHhC
Q 007723 313 NPILLGESGVGKTAIAEGLAIRIVQA 338 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l~~~ 338 (591)
-++++||+|+||||++..++..+...
T Consensus 14 i~litG~mGsGKTT~ll~~~~r~~~~ 39 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELIRRLHRLEYA 39 (223)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 34678999999999999999887653
No 126
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.12 E-value=0.00041 Score=66.60 Aligned_cols=27 Identities=26% Similarity=0.236 Sum_probs=22.6
Q ss_pred CCCCCeEecCCCCcHHHHHHHHHHHHH
Q 007723 310 TKNNPILLGESGVGKTAIAEGLAIRIV 336 (591)
Q Consensus 310 ~~~~ilL~GppGvGKT~la~~lA~~l~ 336 (591)
.+..++|+||+|+|||++++.++..+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~ 48 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGL 48 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 345578999999999999999997664
No 127
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.10 E-value=0.00091 Score=61.65 Aligned_cols=24 Identities=33% Similarity=0.364 Sum_probs=21.8
Q ss_pred CCCeEecCCCCcHHHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~l 335 (591)
..++|+|+||+||||+++.|++.+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 357899999999999999999987
No 128
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.09 E-value=0.0014 Score=72.49 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=23.7
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHHHh
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
...++|+|+||||||+++..++..+..
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~ 230 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAES 230 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 467889999999999999999988755
No 129
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.01 E-value=0.0016 Score=63.64 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=20.7
Q ss_pred CCCeEecCCCCcHHHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~l 335 (591)
.+++++||+|+|||.++..++..+
T Consensus 109 ~~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 109 KRGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp SEEEEEESSSTTHHHHHHHHHHHS
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHc
Confidence 359999999999999998887764
No 130
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.98 E-value=0.00048 Score=65.74 Aligned_cols=23 Identities=22% Similarity=0.200 Sum_probs=20.2
Q ss_pred CCCCeEecCCCCcHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAI 333 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~ 333 (591)
+.-++|+||||+|||+++..++.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34468999999999999999998
No 131
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.90 E-value=0.014 Score=62.04 Aligned_cols=76 Identities=13% Similarity=0.107 Sum_probs=47.2
Q ss_pred CCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhh-------------ccc-----cccchHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM-------------AGA-----KERGELEARVTT 373 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~-------------~g~-----~~~g~~~~~i~~ 373 (591)
.-++|+|++|+||||++..||..+... +.++.-+++.... .|. ....+....+..
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~~l~~~-------G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~ 173 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLARYFQKR-------GYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKE 173 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTT-------TCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHHHHHHC-------CCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHH
Confidence 345789999999999999999988653 3333333322110 011 111234444556
Q ss_pred HHHHHHhcCCeEEEEcCcchh
Q 007723 374 LISEIQKSGDVILFIDEVHTL 394 (591)
Q Consensus 374 i~~~~~~~~~~ILfIDEi~~L 394 (591)
.+..+...+.-++|||....+
T Consensus 174 al~~a~~~~~DvVIIDTaGrl 194 (443)
T 3dm5_A 174 GVDYFKSKGVDIIIVDTAGRH 194 (443)
T ss_dssp HHHHHHHTTCSEEEEECCCCS
T ss_pred HHHHHHhCCCCEEEEECCCcc
Confidence 666666655679999988665
No 132
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.76 E-value=0.00064 Score=63.19 Aligned_cols=25 Identities=36% Similarity=0.434 Sum_probs=23.0
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
..+++|+|++|+||||+++.|++.+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999999988
No 133
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.66 E-value=0.0035 Score=60.61 Aligned_cols=26 Identities=35% Similarity=0.414 Sum_probs=21.9
Q ss_pred CCCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 310 TKNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 310 ~~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
.+.-++|+||||+|||+++..++...
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~ 48 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTC 48 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 34456899999999999999999864
No 134
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.64 E-value=0.0083 Score=65.71 Aligned_cols=169 Identities=14% Similarity=0.192 Sum_probs=95.1
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhh--hh--ccccc-----cch---HHHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGL--LM--AGAKE-----RGE---LEARVTTLISEI 378 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~--l~--~g~~~-----~g~---~~~~i~~i~~~~ 378 (591)
.+|+++.|.+|+|||++++.+...+.....|. ..+++-+|... +. .+... ..+ ....++.+..++
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~---ev~lilIDpKg~eLs~~~~lPHl~~~Vvtd~~~a~~~L~~lv~EM 290 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFKSTPS---EARLIMIDPKMLELSIYEGIPHLLCPVVTDMKEAANALRWSVAEM 290 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTTCCTT---TEEEEEECSSSHHHHTTTTCTTBSSSCBCCHHHHHHHHHHHHHHH
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHhCCCc---ceEEEEeCCChhhhHhhcCCCcccceeeCCHHHHHHHHHHHHHHH
Confidence 58999999999999999999988776544332 45677777552 11 11000 001 111111111111
Q ss_pred H-------------------------------------------------hcCCeEEEEcCcchhhcCCCCCCCCCCccH
Q 007723 379 Q-------------------------------------------------KSGDVILFIDEVHTLIGSGTVGRGNKGTGL 409 (591)
Q Consensus 379 ~-------------------------------------------------~~~~~ILfIDEi~~L~~~~~~~~~~~~~~~ 409 (591)
. .-+..+|+|||++.|+... ..
T Consensus 291 erR~~ll~~~gvrni~~Yn~~~~~~~~~G~~~~dp~~~~~~~~~~~~~~~~lP~ivvVIDE~~~L~~~~---------~~ 361 (574)
T 2iut_A 291 ERRYRLMAAMGVRNLAGFNRKVKDAEEAGTPLTDPLFRRESPDDEPPQLSTLPTIVVVVDEFADMMMIV---------GK 361 (574)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHTTCCCBCTTCCCCSTTCCCCBCCCCCEEEEEESCCTTHHHHT---------CH
T ss_pred HHHHHHHHHcCCccHHHHHHHHHHHhhcccccccccccccccccccccccCCCcEEEEEeCHHHHhhhh---------hH
Confidence 0 0013689999999886421 12
Q ss_pred HHHHhhccccc---CCcEEEEecCChhHHHhhhcccHHHHccCc-ceeecCCCHHHHHHHHHHH-HHHHH----------
Q 007723 410 DISNLLKPSLG---RGELQCIASTTQDEHRTQFEKDKALARRFQ-PVLISEPSQEDAVRILLGL-REKYE---------- 474 (591)
Q Consensus 410 ~~~n~L~~~le---~g~v~lI~att~~e~~~~~~~d~aL~~Rf~-~i~i~~p~~~e~~~iL~~~-~~~~~---------- 474 (591)
++...|..+.. .-.+.+|.+|.... .-.++..+++-|. .|.+...+..+...+|-.- +..+.
T Consensus 362 ~~~~~L~~Iar~GRa~GIhLIlaTQRPs---~d~I~~~Iran~~~RI~lrv~s~~Dsr~ILd~~gAe~LlG~Gdml~l~~ 438 (574)
T 2iut_A 362 KVEELIARIAQKARAAGIHLILATQRPS---VDVITGLIKANIPTRIAFQVSSKIDSRTILDQGGAEQLLGHGDMLYLPP 438 (574)
T ss_dssp HHHHHHHHHHHHCTTTTEEEEEEESCCC---TTTSCHHHHHTCCEEEEECCSCHHHHHHHHSSSCGGGCCSTTEEEEECT
T ss_pred HHHHHHHHHHHHHhhCCeEEEEEecCcc---cccccHHHHhhhccEEEEEcCCHHHHHHhcCcccHhhcCCCCcEEEecC
Confidence 34444444433 23577777776542 1245677888786 4778778888777776321 00000
Q ss_pred ------hhcCCCCcHHHHHHHHHHhH
Q 007723 475 ------AHHNCKFTLEAINAAVHLSA 494 (591)
Q Consensus 475 ------~~~~i~i~~~al~~l~~~s~ 494 (591)
..++..++++.+..+++...
T Consensus 439 G~~~~~Rvq~~fvsd~ei~~vv~~~k 464 (574)
T 2iut_A 439 GTGLPIRVHGAFVSDDEVHRVVEAWK 464 (574)
T ss_dssp TCSSCEEEEECBCCHHHHHHHHHHHH
T ss_pred CCCccEEEECCcCCHHHHHHHHHHHH
Confidence 01234567777777777654
No 135
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.62 E-value=0.0034 Score=64.15 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=21.4
Q ss_pred CCeEecCCCCcHHHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l 335 (591)
.++|+||+|+|||+++..||+.+
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 57899999999999999999987
No 136
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.56 E-value=0.0011 Score=62.68 Aligned_cols=26 Identities=27% Similarity=0.424 Sum_probs=23.4
Q ss_pred CCCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 310 TKNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 310 ~~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
....++|+|++|+||||+++.|++.+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34578999999999999999999988
No 137
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.55 E-value=0.0078 Score=56.73 Aligned_cols=28 Identities=25% Similarity=0.247 Sum_probs=24.0
Q ss_pred cCCCCCeEecCCCCcHHHHHHHHHHHHH
Q 007723 309 RTKNNPILLGESGVGKTAIAEGLAIRIV 336 (591)
Q Consensus 309 ~~~~~ilL~GppGvGKT~la~~lA~~l~ 336 (591)
..+..+.|+||+|+||||+++.|+..+.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3455678999999999999999999884
No 138
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.53 E-value=0.0015 Score=60.43 Aligned_cols=25 Identities=40% Similarity=0.570 Sum_probs=22.9
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
..+++|+|+||+||||+++.|++.+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999999987
No 139
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.53 E-value=0.0029 Score=61.31 Aligned_cols=28 Identities=25% Similarity=0.386 Sum_probs=22.5
Q ss_pred CCCCCeEecCCCCcHHHHHHHHHHHHHh
Q 007723 310 TKNNPILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 310 ~~~~ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
.+..++|+||||+|||+++..++..+..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~ 49 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLK 49 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3455789999999999999888776543
No 140
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.49 E-value=0.0071 Score=67.43 Aligned_cols=27 Identities=26% Similarity=0.476 Sum_probs=23.0
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHHHh
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
.+.+++.|+||||||+++..+...+..
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l~~ 190 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAALIQ 190 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 457899999999999999998877753
No 141
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.48 E-value=0.0034 Score=61.85 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=21.0
Q ss_pred CCeEecCCCCcHHHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l 335 (591)
.++|+||+|+||||+++.||..+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 36789999999999999999987
No 142
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.47 E-value=0.0016 Score=59.39 Aligned_cols=23 Identities=26% Similarity=0.218 Sum_probs=21.3
Q ss_pred CCeEecCCCCcHHHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l 335 (591)
.++|.|+||+||||+++.|++.+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999987
No 143
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.46 E-value=0.0016 Score=60.03 Aligned_cols=24 Identities=33% Similarity=0.578 Sum_probs=22.1
Q ss_pred CCCeEecCCCCcHHHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~l 335 (591)
.+++|+|+||+||||+++.|+..+
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 368899999999999999999987
No 144
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.42 E-value=0.013 Score=55.35 Aligned_cols=30 Identities=33% Similarity=0.351 Sum_probs=26.2
Q ss_pred CCCCCeEecCCCCcHHHHHHHHHHHHHhCC
Q 007723 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAE 339 (591)
Q Consensus 310 ~~~~ilL~GppGvGKT~la~~lA~~l~~~~ 339 (591)
.+.++++++++|.||||+|-+++.+....+
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA~g~G 56 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARAVGHG 56 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHHHHTT
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 467899999999999999999999987644
No 145
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.41 E-value=0.0033 Score=58.01 Aligned_cols=24 Identities=38% Similarity=0.357 Sum_probs=17.7
Q ss_pred CCCeEecCCCCcHHHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~l 335 (591)
..++|.|+||+||||+++.|++.+
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 457899999999999999999877
No 146
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.40 E-value=0.013 Score=60.79 Aligned_cols=29 Identities=14% Similarity=0.241 Sum_probs=24.5
Q ss_pred cCCCCCeEecCCCCcHHHHHHHHHHHHHh
Q 007723 309 RTKNNPILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 309 ~~~~~ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
.....++|+||+|+||||++++++..+..
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~~ 149 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLNN 149 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccC
Confidence 34447889999999999999999998854
No 147
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.39 E-value=0.0026 Score=61.76 Aligned_cols=25 Identities=28% Similarity=0.480 Sum_probs=21.1
Q ss_pred CCCCCeEecCCCCcHHHHHHHHHHH
Q 007723 310 TKNNPILLGESGVGKTAIAEGLAIR 334 (591)
Q Consensus 310 ~~~~ilL~GppGvGKT~la~~lA~~ 334 (591)
.+.-+.|+||+|+|||||++.++..
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~ 53 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 4456789999999999999999843
No 148
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.35 E-value=0.0033 Score=64.50 Aligned_cols=24 Identities=29% Similarity=0.547 Sum_probs=21.9
Q ss_pred CCCeEecCCCCcHHHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~l 335 (591)
..++|+||+|+|||+|+..||+.+
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHC
Confidence 357899999999999999999987
No 149
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.35 E-value=0.0057 Score=64.49 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=20.8
Q ss_pred CCCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 310 TKNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 310 ~~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
...-++|+||||+|||+|++.++...
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~ 202 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTC 202 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHh
Confidence 34456899999999999999876543
No 150
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.34 E-value=0.002 Score=59.79 Aligned_cols=24 Identities=33% Similarity=0.573 Sum_probs=22.0
Q ss_pred CCCeEecCCCCcHHHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~l 335 (591)
..++|+|+||+||||+++.|++.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 357899999999999999999987
No 151
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.33 E-value=0.0055 Score=63.43 Aligned_cols=78 Identities=18% Similarity=0.172 Sum_probs=45.2
Q ss_pred CCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhh-------cccc-------ccchHHHHHHHHH
Q 007723 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM-------AGAK-------ERGELEARVTTLI 375 (591)
Q Consensus 310 ~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~-------~g~~-------~~g~~~~~i~~i~ 375 (591)
.+.-++|+||||+|||+|+..++..+... +..+++++..... .|.. .....++.+ .++
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~-------g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l-~~~ 131 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAA-------GGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQAL-EIA 131 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT-------TCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHH-HHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC-------CCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHH-HHH
Confidence 34457899999999999999998877543 2334444432111 0100 001223322 233
Q ss_pred HHHH-hcCCeEEEEcCcchhh
Q 007723 376 SEIQ-KSGDVILFIDEVHTLI 395 (591)
Q Consensus 376 ~~~~-~~~~~ILfIDEi~~L~ 395 (591)
..+. .....+||||++..+.
T Consensus 132 ~~l~~~~~~~lIVIDsl~~l~ 152 (349)
T 2zr9_A 132 DMLVRSGALDIIVIDSVAALV 152 (349)
T ss_dssp HHHHTTTCCSEEEEECGGGCC
T ss_pred HHHHhcCCCCEEEEcChHhhc
Confidence 3232 3457899999999986
No 152
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.33 E-value=0.0017 Score=59.33 Aligned_cols=25 Identities=28% Similarity=0.574 Sum_probs=22.6
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
..+++|.|++|+||||+++.|+..+
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999999988
No 153
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.32 E-value=0.0059 Score=62.45 Aligned_cols=26 Identities=31% Similarity=0.569 Sum_probs=22.2
Q ss_pred CCCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 310 TKNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 310 ~~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
.+.-++|+||||+|||+++..++..+
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 34557899999999999999999875
No 154
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.30 E-value=0.0053 Score=58.72 Aligned_cols=25 Identities=36% Similarity=0.535 Sum_probs=21.4
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
..-+.|+||+|+|||||++.++..+
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3456899999999999999999865
No 155
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.28 E-value=0.0019 Score=60.20 Aligned_cols=25 Identities=36% Similarity=0.513 Sum_probs=22.3
Q ss_pred CCCCCeEecCCCCcHHHHHHHHHHH
Q 007723 310 TKNNPILLGESGVGKTAIAEGLAIR 334 (591)
Q Consensus 310 ~~~~ilL~GppGvGKT~la~~lA~~ 334 (591)
.+.+++|+|+||+||||+++.|+..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3456899999999999999999997
No 156
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.24 E-value=0.0074 Score=61.25 Aligned_cols=23 Identities=35% Similarity=0.426 Sum_probs=20.7
Q ss_pred CCeEecCCCCcHHHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l 335 (591)
-++|.||+|+|||+|+..||+.+
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTT
T ss_pred EEEEECCCcCCHHHHHHHHHHhC
Confidence 36788999999999999999976
No 157
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.23 E-value=0.0025 Score=58.35 Aligned_cols=24 Identities=38% Similarity=0.616 Sum_probs=22.0
Q ss_pred CCCeEecCCCCcHHHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~l 335 (591)
..++|+|++|+||||+++.|+..+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999976
No 158
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.23 E-value=0.0075 Score=61.07 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=20.8
Q ss_pred CCeEecCCCCcHHHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l 335 (591)
-++|+||+|+|||+|+..||+.+
T Consensus 12 ~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCccCHHHHHHHHHHhC
Confidence 35788999999999999999986
No 159
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.16 E-value=0.0078 Score=62.41 Aligned_cols=79 Identities=14% Similarity=0.147 Sum_probs=45.9
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhc-------cc-------cccchHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA-------GA-------KERGELEARVTTLIS 376 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~-------g~-------~~~g~~~~~i~~i~~ 376 (591)
..-++|+||||+|||+|+..++..+... +..+++++...... |. ......++.+..+..
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~-------gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~ 133 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKM-------GGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDE 133 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHT-------TCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhc-------CCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHH
Confidence 3456899999999999999999887542 23344444332110 00 011123333322222
Q ss_pred HHHhcCCeEEEEcCcchhhc
Q 007723 377 EIQKSGDVILFIDEVHTLIG 396 (591)
Q Consensus 377 ~~~~~~~~ILfIDEi~~L~~ 396 (591)
.+......+++||.+..+..
T Consensus 134 l~~~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 134 LVRSGVVDLIVVDSVAALVP 153 (356)
T ss_dssp HHHTSCCSEEEEECTTTCCC
T ss_pred HhhhcCCCeEEehHhhhhcC
Confidence 22235677999999988864
No 160
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.14 E-value=0.012 Score=57.84 Aligned_cols=23 Identities=35% Similarity=0.374 Sum_probs=21.1
Q ss_pred CCeEecCCCCcHHHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l 335 (591)
.++|+|+||+||||+++.|+..+
T Consensus 34 ~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 34 AILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp EEEEESCGGGTTHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 46899999999999999999987
No 161
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.12 E-value=0.0078 Score=62.70 Aligned_cols=79 Identities=15% Similarity=0.181 Sum_probs=46.6
Q ss_pred CCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhh-------cccc-------ccchHHHHHHHHH
Q 007723 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM-------AGAK-------ERGELEARVTTLI 375 (591)
Q Consensus 310 ~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~-------~g~~-------~~g~~~~~i~~i~ 375 (591)
...-++|+|+||+|||+++..++..+... +..+++++..... .|.. .....++. ..++
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~-------g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~-l~~l 144 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKA-------GGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQA-LEIM 144 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT-------TCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHH-HHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHC-------CCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHH-HHHH
Confidence 34457899999999999999998877543 2344444433211 0100 01123332 2333
Q ss_pred HHHH-hcCCeEEEEcCcchhhc
Q 007723 376 SEIQ-KSGDVILFIDEVHTLIG 396 (591)
Q Consensus 376 ~~~~-~~~~~ILfIDEi~~L~~ 396 (591)
+.+. .....+||||.+..+..
T Consensus 145 ~~l~~~~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 145 ELLVRSGAIDVVVVDSVAALTP 166 (366)
T ss_dssp HHHHTTTCCSEEEEECTTTCCC
T ss_pred HHHHhcCCCCEEEEeChHHhcc
Confidence 3333 34567999999999964
No 162
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.12 E-value=0.0022 Score=59.73 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=21.7
Q ss_pred CCCeEecCCCCcHHHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~l 335 (591)
..++|+|+||+||||+++.|+..+
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 357899999999999999999987
No 163
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.11 E-value=0.0016 Score=61.46 Aligned_cols=25 Identities=20% Similarity=0.108 Sum_probs=21.2
Q ss_pred CeEecCCCCcHHHHHHHHHHHHHhC
Q 007723 314 PILLGESGVGKTAIAEGLAIRIVQA 338 (591)
Q Consensus 314 ilL~GppGvGKT~la~~lA~~l~~~ 338 (591)
.+++||.|+||||.+..+++.....
T Consensus 11 ~v~~G~mgsGKTT~ll~~a~r~~~~ 35 (191)
T 1xx6_A 11 EVIVGPMYSGKSEELIRRIRRAKIA 35 (191)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHC
Confidence 4688999999999999998887543
No 164
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.10 E-value=0.011 Score=61.25 Aligned_cols=79 Identities=14% Similarity=0.174 Sum_probs=46.7
Q ss_pred CCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhh-------cccc-------ccchHHHHHHHHH
Q 007723 310 TKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM-------AGAK-------ERGELEARVTTLI 375 (591)
Q Consensus 310 ~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~-------~g~~-------~~g~~~~~i~~i~ 375 (591)
....++|+|+||+|||+|+..++..+... +..++.++..... .|.. .....++ +..++
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~-------g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~-~~~~~ 133 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQRE-------GKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQ-ALEIC 133 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT-------TCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHH-HHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC-------CCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHH-HHHHH
Confidence 34557899999999999999999887543 2344555542110 0100 0011222 33333
Q ss_pred HHH-HhcCCeEEEEcCcchhhc
Q 007723 376 SEI-QKSGDVILFIDEVHTLIG 396 (591)
Q Consensus 376 ~~~-~~~~~~ILfIDEi~~L~~ 396 (591)
..+ ......+||||.+..+..
T Consensus 134 ~~l~~~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 134 DALARSGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HHHHHHTCCSEEEEECGGGCCC
T ss_pred HHHHhccCCCEEEEcCHHHhcc
Confidence 333 235677999999999863
No 165
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.10 E-value=0.0033 Score=57.47 Aligned_cols=24 Identities=25% Similarity=0.469 Sum_probs=21.9
Q ss_pred CCCeEecCCCCcHHHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~l 335 (591)
..++|+|++|+||||+++.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999999987
No 166
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.10 E-value=0.0089 Score=59.02 Aligned_cols=26 Identities=35% Similarity=0.436 Sum_probs=22.7
Q ss_pred CCCeEecCCCCcHHHHHHHHHHHHHh
Q 007723 312 NNPILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
..++|+|+||+||||+++.|+..+..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~ 30 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSK 30 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 35789999999999999999998753
No 167
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.09 E-value=0.0096 Score=63.70 Aligned_cols=28 Identities=36% Similarity=0.470 Sum_probs=23.6
Q ss_pred CCCCCeEecCCCCcHHHHHHHHHHHHHh
Q 007723 310 TKNNPILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 310 ~~~~ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
++..++|+|++|+|||+|++.++..+..
T Consensus 150 kGq~~~i~G~sGvGKTtL~~~l~~~~~~ 177 (473)
T 1sky_E 150 KGGKIGLFGGAGVGKTVLIQELIHNIAQ 177 (473)
T ss_dssp TTCEEEEECCSSSCHHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCccHHHHHHHhhhhh
Confidence 3456899999999999999999887643
No 168
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.04 E-value=0.0066 Score=59.50 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=19.6
Q ss_pred CCCeEecCCCCcHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAI 333 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~ 333 (591)
-+|+|+|.+|+|||+|+..|..
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~ 43 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILG 43 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCcHHHHHHHHhC
Confidence 4689999999999999999864
No 169
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.03 E-value=0.01 Score=57.45 Aligned_cols=24 Identities=29% Similarity=0.526 Sum_probs=20.7
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIR 334 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~ 334 (591)
...++|+|++|+|||+|++.|...
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTS
T ss_pred ceEEEEECCCCCCHHHHHHHHcCC
Confidence 356899999999999999998753
No 170
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.03 E-value=0.003 Score=57.40 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=19.2
Q ss_pred CCeEecCCCCcHHHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l 335 (591)
.++|+|+||+||||+++.| ..+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHT
T ss_pred EEEEECCCCCCHHHHHHHH-HHC
Confidence 4689999999999999999 554
No 171
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.01 E-value=0.011 Score=62.91 Aligned_cols=26 Identities=35% Similarity=0.350 Sum_probs=22.5
Q ss_pred CCeEecCCCCcHHHHHHHHHHHHHhC
Q 007723 313 NPILLGESGVGKTAIAEGLAIRIVQA 338 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l~~~ 338 (591)
.++|+|++|+||||++..||..+...
T Consensus 99 vI~lvG~~GsGKTTt~~kLA~~l~~~ 124 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTAGKLAYFYKKR 124 (433)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 35788999999999999999988653
No 172
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.00 E-value=0.0049 Score=63.60 Aligned_cols=44 Identities=30% Similarity=0.406 Sum_probs=31.8
Q ss_pred CCcHHHHHHHHHHHH----hcCCCCCeEecCCCCcHHHHHHHHHHHHH
Q 007723 293 IGRETEIQRIIQILC----RRTKNNPILLGESGVGKTAIAEGLAIRIV 336 (591)
Q Consensus 293 vG~~~~i~~l~~~L~----~~~~~~ilL~GppGvGKT~la~~lA~~l~ 336 (591)
+..+..++.++..+. .....+++|+|++|+||||+++.|+..+.
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 344455555555543 33445689999999999999999999873
No 173
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.99 E-value=0.0034 Score=58.54 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=22.5
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
...++|+|+||+||||+++.|++.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4567899999999999999999987
No 174
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.99 E-value=0.0036 Score=59.94 Aligned_cols=25 Identities=32% Similarity=0.465 Sum_probs=22.5
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
+..++|+|+||+||||+++.|+..+
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3467899999999999999999987
No 175
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.98 E-value=0.0037 Score=59.00 Aligned_cols=24 Identities=29% Similarity=0.554 Sum_probs=21.9
Q ss_pred CCCeEecCCCCcHHHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~l 335 (591)
..++|+|++|+||||+++.|+..+
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999999987
No 176
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.94 E-value=0.015 Score=59.86 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=21.3
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
+.-++|+||||+|||+++..++...
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~ 146 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTA 146 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3446899999999999999998864
No 177
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.92 E-value=0.0039 Score=58.77 Aligned_cols=24 Identities=38% Similarity=0.505 Sum_probs=21.7
Q ss_pred CCCeEecCCCCcHHHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~l 335 (591)
..++|+|+||+||||+++.|+..+
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999999987
No 178
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.91 E-value=0.0077 Score=60.54 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.8
Q ss_pred CCeEecCCCCcHHHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l 335 (591)
.++|+||||+||||+++.|+..+
T Consensus 35 livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46889999999999999999876
No 179
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.88 E-value=0.014 Score=55.43 Aligned_cols=30 Identities=27% Similarity=0.263 Sum_probs=24.9
Q ss_pred HhcCCCCCeEecCCCCcHHHHHHHHHHHHH
Q 007723 307 CRRTKNNPILLGESGVGKTAIAEGLAIRIV 336 (591)
Q Consensus 307 ~~~~~~~ilL~GppGvGKT~la~~lA~~l~ 336 (591)
....+..++|+|++|+||||+++.|+..+.
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 334455678999999999999999999885
No 180
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.84 E-value=0.0039 Score=57.75 Aligned_cols=23 Identities=39% Similarity=0.549 Sum_probs=21.3
Q ss_pred CCeEecCCCCcHHHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l 335 (591)
.++|+|+||+||||+++.|++.+
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999877
No 181
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.84 E-value=0.0045 Score=57.49 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=21.2
Q ss_pred CCeEecCCCCcHHHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l 335 (591)
.++|+|+||+||||+++.|+..+
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999877
No 182
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.83 E-value=0.0037 Score=57.95 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=22.0
Q ss_pred CCeEecCCCCcHHHHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAIRIV 336 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l~ 336 (591)
.++|.|+||+||||+++.|++.+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999885
No 183
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.82 E-value=0.0074 Score=64.78 Aligned_cols=27 Identities=30% Similarity=0.358 Sum_probs=22.9
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHHHh
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
+.-++|.|+||+|||+++..++..+..
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~ 229 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVAT 229 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 345688899999999999999988754
No 184
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.82 E-value=0.0041 Score=57.64 Aligned_cols=25 Identities=20% Similarity=0.233 Sum_probs=22.4
Q ss_pred CCCeEecCCCCcHHHHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIRIV 336 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~l~ 336 (591)
..++|.|+||+||||+++.|+..+.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3578999999999999999999884
No 185
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.79 E-value=0.0046 Score=56.24 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=21.3
Q ss_pred CCeEecCCCCcHHHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l 335 (591)
.++|+|++|+||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999987
No 186
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.77 E-value=0.004 Score=57.12 Aligned_cols=21 Identities=24% Similarity=0.335 Sum_probs=19.4
Q ss_pred CCeEecCCCCcHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAI 333 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~ 333 (591)
.++|.|+||+||||+++.|++
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 468999999999999999998
No 187
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.76 E-value=0.005 Score=58.97 Aligned_cols=25 Identities=36% Similarity=0.476 Sum_probs=22.5
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
...++|.|+||+||||+++.|+..+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3467899999999999999999987
No 188
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.76 E-value=0.0038 Score=59.54 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=20.9
Q ss_pred CCeEecCCCCcHHHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l 335 (591)
.++|+|+||+||||+++.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999876
No 189
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.76 E-value=0.0047 Score=57.74 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=22.4
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
+..++|+|+||+||||+++.|++.+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3457899999999999999999987
No 190
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.75 E-value=0.0053 Score=59.48 Aligned_cols=25 Identities=36% Similarity=0.473 Sum_probs=22.7
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
...++|+|+||+||||+++.|+..+
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3568899999999999999999987
No 191
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=95.74 E-value=0.034 Score=60.28 Aligned_cols=72 Identities=14% Similarity=0.210 Sum_probs=43.3
Q ss_pred eEEEEcCcchhhcCCCCCCCCCCccHHHHHhhcccccC---CcEEEEecCChhHHHhhhcccHHHHccCc-ceeecCCCH
Q 007723 384 VILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR---GELQCIASTTQDEHRTQFEKDKALARRFQ-PVLISEPSQ 459 (591)
Q Consensus 384 ~ILfIDEi~~L~~~~~~~~~~~~~~~~~~n~L~~~le~---g~v~lI~att~~e~~~~~~~d~aL~~Rf~-~i~i~~p~~ 459 (591)
.+|+|||.+.++... ..++.+.|..+... -.+.+|.+|.... .-.++..+++-|. .|.+...+.
T Consensus 299 ivlvIDE~~~ll~~~---------~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~---~dvl~~~i~~n~~~RI~lrv~s~ 366 (512)
T 2ius_A 299 IVVLVDEFADLMMTV---------GKKVEELIARLAQKARAAGIHLVLATQRPS---VDVITGLIKANIPTRIAFTVSSK 366 (512)
T ss_dssp EEEEEETHHHHHHHH---------HHHHHHHHHHHHHHCGGGTEEEEEEESCCC---TTTSCHHHHHHCCEEEEECCSSH
T ss_pred EEEEEeCHHHHHhhh---------hHHHHHHHHHHHHHhhhCCcEEEEEecCCc---cccccHHHHhhcCCeEEEEcCCH
Confidence 589999999885321 12333444333222 2467777665542 1235567777775 577888888
Q ss_pred HHHHHHHH
Q 007723 460 EDAVRILL 467 (591)
Q Consensus 460 ~e~~~iL~ 467 (591)
.+...++.
T Consensus 367 ~dsr~ilg 374 (512)
T 2ius_A 367 IDSRTILD 374 (512)
T ss_dssp HHHHHHHS
T ss_pred HHHHHhcC
Confidence 88777764
No 192
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.73 E-value=0.006 Score=58.25 Aligned_cols=22 Identities=36% Similarity=0.495 Sum_probs=20.6
Q ss_pred CeEecCCCCcHHHHHHHHHHHH
Q 007723 314 PILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 314 ilL~GppGvGKT~la~~lA~~l 335 (591)
++|.||||+||+|.|+.|++.+
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6889999999999999999977
No 193
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.72 E-value=0.0049 Score=58.69 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=21.1
Q ss_pred CCeEecCCCCcHHHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l 335 (591)
.++|+|+||+||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999877
No 194
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.71 E-value=0.005 Score=58.12 Aligned_cols=27 Identities=37% Similarity=0.581 Sum_probs=22.9
Q ss_pred cCCCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 309 RTKNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 309 ~~~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
..+..++|+||+|+||||+++.|+..+
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 345567899999999999999999877
No 195
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=95.71 E-value=0.01 Score=55.95 Aligned_cols=25 Identities=32% Similarity=0.272 Sum_probs=21.2
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
..++++++|+|+|||.++..++...
T Consensus 48 ~~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 48 GKNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEcCCCCCHHHHHHHHHHHH
Confidence 4679999999999999988877654
No 196
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.69 E-value=0.013 Score=56.55 Aligned_cols=25 Identities=28% Similarity=0.480 Sum_probs=20.5
Q ss_pred CCCCCeEecCCCCcHHHHHHHHHHH
Q 007723 310 TKNNPILLGESGVGKTAIAEGLAIR 334 (591)
Q Consensus 310 ~~~~ilL~GppGvGKT~la~~lA~~ 334 (591)
.+.-++|+|+||+|||+++..++..
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 3445789999999999999887754
No 197
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.68 E-value=0.012 Score=57.49 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=22.1
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
+..++|+||||+||||+++.|++.+
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3457899999999999999999877
No 198
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.67 E-value=0.0047 Score=59.52 Aligned_cols=25 Identities=16% Similarity=0.453 Sum_probs=22.3
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
...++|+|+||+||||+++.|+..+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3467899999999999999999876
No 199
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.67 E-value=0.0066 Score=55.68 Aligned_cols=24 Identities=38% Similarity=0.592 Sum_probs=21.4
Q ss_pred CCCeEecCCCCcHHHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~l 335 (591)
..++|+|++|+||||+++.|+..+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhh
Confidence 357899999999999999999876
No 200
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.67 E-value=0.0054 Score=56.85 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=21.2
Q ss_pred CCeEecCCCCcHHHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l 335 (591)
.++|+|+||+||||+++.|+..+
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999977
No 201
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=95.63 E-value=0.083 Score=49.34 Aligned_cols=25 Identities=28% Similarity=0.271 Sum_probs=18.4
Q ss_pred CCCCeEecCCCCcHHHHHHH-HHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEG-LAIRI 335 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~-lA~~l 335 (591)
..++++.+|+|+|||..+-. +...+
T Consensus 38 ~~~~li~~~TGsGKT~~~~~~~~~~l 63 (207)
T 2gxq_A 38 GKDLIGQARTGTGKTLAFALPIAERL 63 (207)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHHHC
T ss_pred CCCEEEECCCCChHHHHHHHHHHHHH
Confidence 46799999999999987443 33443
No 202
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.62 E-value=0.018 Score=60.36 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=21.0
Q ss_pred CCeEecCCCCcHHHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l 335 (591)
-++|.||+|+|||+|+..|+..+
T Consensus 4 ~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHH
T ss_pred EEEEECcchhhHHHHHHHHHHHC
Confidence 36788999999999999999987
No 203
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.61 E-value=0.0057 Score=57.91 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=22.1
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
+..++|+||||+||||+++.|+..+
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3457899999999999999999876
No 204
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.59 E-value=0.033 Score=57.60 Aligned_cols=26 Identities=27% Similarity=0.532 Sum_probs=22.6
Q ss_pred CCCeEecCCCCcHHHHHHHHHHHHHh
Q 007723 312 NNPILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
..+.|+|+||+||||++..|+..+..
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~~ 105 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLIE 105 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45689999999999999999988754
No 205
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.59 E-value=0.013 Score=60.69 Aligned_cols=26 Identities=38% Similarity=0.547 Sum_probs=22.1
Q ss_pred CCCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 310 TKNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 310 ~~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
.+.-+.|+||+|+|||+|++.++..+
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34456799999999999999999875
No 206
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.58 E-value=0.012 Score=62.99 Aligned_cols=26 Identities=27% Similarity=0.277 Sum_probs=22.4
Q ss_pred CCCeEecCCCCcHHHHHHHHHHHHHh
Q 007723 312 NNPILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
.-++|.|+||+|||+++..++..+..
T Consensus 201 ~l~ii~G~pg~GKT~lal~ia~~~a~ 226 (444)
T 2q6t_A 201 SLNIIAARPAMGKTAFALTIAQNAAL 226 (444)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 34678899999999999999988764
No 207
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.57 E-value=0.0062 Score=58.35 Aligned_cols=25 Identities=16% Similarity=0.215 Sum_probs=22.6
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
...++|.|+||+||||+++.|++.+
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3568899999999999999999987
No 208
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.55 E-value=0.0062 Score=57.17 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=21.3
Q ss_pred CCCeEecCCCCcHHHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~l 335 (591)
+.++|+||+|+|||||++.|....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 458999999999999999998765
No 209
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.55 E-value=0.0091 Score=56.29 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=20.3
Q ss_pred CeEecCCCCcHH-HHHHHHHHHHHh
Q 007723 314 PILLGESGVGKT-AIAEGLAIRIVQ 337 (591)
Q Consensus 314 ilL~GppGvGKT-~la~~lA~~l~~ 337 (591)
.+++||.|+||| .|.+++.+....
T Consensus 23 ~fiyG~MgsGKTt~Ll~~i~n~~~~ 47 (195)
T 1w4r_A 23 QVILGPMFSGKSTELMRRVRRFQIA 47 (195)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHc
Confidence 468899999999 889998887654
No 210
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.51 E-value=0.0057 Score=56.81 Aligned_cols=26 Identities=38% Similarity=0.326 Sum_probs=22.8
Q ss_pred CCCeEecCCCCcHHHHHHHHHHHHHh
Q 007723 312 NNPILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
..++|+|++|+||||+++.|+..+..
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 45689999999999999999998853
No 211
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=95.49 E-value=0.12 Score=51.21 Aligned_cols=39 Identities=18% Similarity=0.122 Sum_probs=25.9
Q ss_pred cHHHHHHHHHHHHhcCCCCCeEecCCCCcHHHHHHHHHHHHH
Q 007723 295 RETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIV 336 (591)
Q Consensus 295 ~~~~i~~l~~~L~~~~~~~ilL~GppGvGKT~la~~lA~~l~ 336 (591)
++...+.+..++.. .+.++.+|+|+|||.++..++....
T Consensus 115 ~~~Q~~ai~~~l~~---~~~ll~~~tGsGKT~~~~~~~~~~~ 153 (282)
T 1rif_A 115 HWYQKDAVFEGLVN---RRRILNLPTSAGRSLIQALLARYYL 153 (282)
T ss_dssp CHHHHHHHHHHHHH---SEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhc---CCeEEEcCCCCCcHHHHHHHHHHHH
Confidence 33344444444443 3468899999999999987776543
No 212
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=95.48 E-value=0.21 Score=48.97 Aligned_cols=19 Identities=21% Similarity=0.179 Sum_probs=16.2
Q ss_pred CCCeEecCCCCcHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEG 330 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~ 330 (591)
.++++.+|+|+|||..+..
T Consensus 92 ~~~lv~a~TGsGKT~~~~l 110 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFLI 110 (262)
T ss_dssp CCCEECCCTTSCHHHHHHH
T ss_pred CcEEEEccCCCCchHHHHH
Confidence 6799999999999987544
No 213
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.45 E-value=0.0093 Score=59.10 Aligned_cols=28 Identities=21% Similarity=0.285 Sum_probs=23.9
Q ss_pred cCCCCCeEecCCCCcHHHHHHHHHHHHH
Q 007723 309 RTKNNPILLGESGVGKTAIAEGLAIRIV 336 (591)
Q Consensus 309 ~~~~~ilL~GppGvGKT~la~~lA~~l~ 336 (591)
..+..++|+||+|+||||+++.++..+.
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCC
Confidence 3445678999999999999999999874
No 214
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.44 E-value=0.0069 Score=57.00 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=21.4
Q ss_pred CCCeEecCCCCcHHHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~l 335 (591)
..++|+|++|+||||+++.|++.+
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 347899999999999999999876
No 215
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.43 E-value=0.0085 Score=57.69 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.6
Q ss_pred CCeEecCCCCcHHHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l 335 (591)
-++|.||||+||+|.|+.|++.+
T Consensus 31 iI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 35778999999999999999977
No 216
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.43 E-value=0.0049 Score=57.30 Aligned_cols=24 Identities=46% Similarity=0.544 Sum_probs=20.8
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIR 334 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~ 334 (591)
+..++|+||+|+||||+++.|+..
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 345789999999999999999875
No 217
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=95.40 E-value=0.28 Score=47.21 Aligned_cols=20 Identities=20% Similarity=0.092 Sum_probs=16.5
Q ss_pred CCCCeEecCCCCcHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEG 330 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~ 330 (591)
+.++++.+|+|+|||.....
T Consensus 66 g~~~l~~apTGsGKT~~~~l 85 (242)
T 3fe2_A 66 GLDMVGVAQTGSGKTLSYLL 85 (242)
T ss_dssp TCCEEEEECTTSCHHHHHHH
T ss_pred CCCEEEECCCcCHHHHHHHH
Confidence 36899999999999987543
No 218
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.39 E-value=0.0064 Score=57.95 Aligned_cols=23 Identities=30% Similarity=0.309 Sum_probs=21.2
Q ss_pred CCeEecCCCCcHHHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l 335 (591)
+++|.|+||+||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999977
No 219
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.38 E-value=0.0072 Score=56.95 Aligned_cols=24 Identities=29% Similarity=0.162 Sum_probs=21.8
Q ss_pred CCeEecCCCCcHHHHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAIRIV 336 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l~ 336 (591)
.++|.|+||+||||+++.|++.+.
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHh
Confidence 478999999999999999999883
No 220
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.37 E-value=0.0033 Score=60.28 Aligned_cols=24 Identities=21% Similarity=0.075 Sum_probs=20.5
Q ss_pred eEecCCCCcHHHHHHHHHHHHHhC
Q 007723 315 ILLGESGVGKTAIAEGLAIRIVQA 338 (591)
Q Consensus 315 lL~GppGvGKT~la~~lA~~l~~~ 338 (591)
+++|+.|+||||.+..++......
T Consensus 32 vitG~MgsGKTT~lL~~a~r~~~~ 55 (214)
T 2j9r_A 32 VICGSMFSGKSEELIRRVRRTQFA 55 (214)
T ss_dssp EEECSTTSCHHHHHHHHHHHHHHT
T ss_pred EEECCCCCcHHHHHHHHHHHHHHC
Confidence 578999999999999998887543
No 221
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.37 E-value=0.03 Score=57.45 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=21.2
Q ss_pred CCeEecCCCCcHHHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l 335 (591)
.++|.||+|+|||+++..|+..+
T Consensus 9 lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCcCcHHHHHHHHHHHc
Confidence 46799999999999999999987
No 222
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.34 E-value=0.0077 Score=56.39 Aligned_cols=23 Identities=22% Similarity=0.550 Sum_probs=21.3
Q ss_pred CCeEecCCCCcHHHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l 335 (591)
.++|.|++|+||||+++.|++.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 36899999999999999999987
No 223
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.32 E-value=0.01 Score=58.43 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=23.3
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
+..++|+|++|+||||+++.|+..+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5679999999999999999999987
No 224
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.28 E-value=0.034 Score=56.35 Aligned_cols=25 Identities=32% Similarity=0.416 Sum_probs=22.2
Q ss_pred CCeEecCCCCcHHHHHHHHHHHHHh
Q 007723 313 NPILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
-++|+|++|+||||++..||..+..
T Consensus 106 vi~ivG~~GsGKTTl~~~LA~~l~~ 130 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCGKLAKMFVD 130 (306)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHHHHHHHHh
Confidence 4679999999999999999998854
No 225
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.27 E-value=0.0085 Score=55.54 Aligned_cols=24 Identities=33% Similarity=0.574 Sum_probs=21.2
Q ss_pred CCCeEecCCCCcHHHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~l 335 (591)
.-++|+||+|+|||||++.|+...
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 346899999999999999999875
No 226
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.24 E-value=0.036 Score=55.91 Aligned_cols=27 Identities=30% Similarity=0.401 Sum_probs=23.5
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHHHh
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
+..++|+|++|+||||++..||..+..
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~ 131 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISML 131 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 446789999999999999999998863
No 227
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.23 E-value=0.031 Score=61.33 Aligned_cols=58 Identities=21% Similarity=0.246 Sum_probs=35.7
Q ss_pred hcccccccCCCC-ccCCcHHHHHHHHHHH--HhcCCCCCeEecCCCCcHHHHHHHHHHHHH
Q 007723 279 DLTARASEELID-PVIGRETEIQRIIQIL--CRRTKNNPILLGESGVGKTAIAEGLAIRIV 336 (591)
Q Consensus 279 ~l~~~~r~~~~~-~vvG~~~~i~~l~~~L--~~~~~~~ilL~GppGvGKT~la~~lA~~l~ 336 (591)
.+.+.++.+.-. ....+.+..+.+.... .-..+..++|+|++|+|||||++.|+..+.
T Consensus 334 ~ir~~Lr~G~~~p~~f~~peV~~vLR~~~~~~~~~G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 334 EFQRRMRAGLKIPEWYSFPEVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp HHHHHHTTTCCCCTTTSCHHHHHHHHHHSCCGGGSCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCccccccchhhhhhhhcccccccceEEEEECCCCChHHHHHHHHHHhhc
Confidence 344445544332 2334444444444332 123445678999999999999999999885
No 228
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.22 E-value=0.011 Score=55.12 Aligned_cols=25 Identities=24% Similarity=0.228 Sum_probs=22.1
Q ss_pred CeEecCCCCcHHHHHHHHHHHHHhC
Q 007723 314 PILLGESGVGKTAIAEGLAIRIVQA 338 (591)
Q Consensus 314 ilL~GppGvGKT~la~~lA~~l~~~ 338 (591)
++|.|++|+||||+++.|++.+...
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~ 27 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKR 27 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
Confidence 5789999999999999999988543
No 229
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.20 E-value=0.012 Score=54.66 Aligned_cols=24 Identities=33% Similarity=0.285 Sum_probs=21.7
Q ss_pred CeEecCCCCcHHHHHHHHHHHHHh
Q 007723 314 PILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 314 ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
++|.|++|+||||+++.|++.+..
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~ 26 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLKQ 26 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 679999999999999999998853
No 230
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.19 E-value=0.01 Score=57.11 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=21.1
Q ss_pred CCeEecCCCCcHHHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l 335 (591)
.++|.|+||+||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 36899999999999999999987
No 231
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.17 E-value=0.0094 Score=62.25 Aligned_cols=29 Identities=24% Similarity=0.306 Sum_probs=24.5
Q ss_pred cCCCCCeEecCCCCcHHHHHHHHHHHHHh
Q 007723 309 RTKNNPILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 309 ~~~~~ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
..+..++|+||+|+||||+++.++..+..
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~ 162 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYINQ 162 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcCc
Confidence 34456889999999999999999998753
No 232
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.13 E-value=0.0097 Score=56.19 Aligned_cols=26 Identities=15% Similarity=0.118 Sum_probs=22.7
Q ss_pred CCCeEecCCCCcHHHHHHHHHHHHHh
Q 007723 312 NNPILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
..++|.|++|+||||+++.|++.+..
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 45789999999999999999998743
No 233
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.11 E-value=0.019 Score=71.37 Aligned_cols=80 Identities=11% Similarity=0.153 Sum_probs=48.4
Q ss_pred cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhccc--ccc-----------chHHHHHHHHH
Q 007723 309 RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMAGA--KER-----------GELEARVTTLI 375 (591)
Q Consensus 309 ~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~g~--~~~-----------g~~~~~i~~i~ 375 (591)
+...+++|+||||||||+|+..++...... +.+++.+++....... ... .+..+....+.
T Consensus 1079 ~~g~~vll~G~~GtGKT~la~~~~~ea~k~-------Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~ 1151 (2050)
T 3cmu_A 1079 PMGRIVEIYGPESSGKTTLTLQVIAAAQRE-------GKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEIC 1151 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHTT-------TCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHc-------CCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHH
Confidence 345778999999999999999999877543 3444555544321100 000 00112233344
Q ss_pred HHHHh-cCCeEEEEcCcchhh
Q 007723 376 SEIQK-SGDVILFIDEVHTLI 395 (591)
Q Consensus 376 ~~~~~-~~~~ILfIDEi~~L~ 395 (591)
+.+.+ ....+|+||++..|.
T Consensus 1152 ~~l~~~~~~dlvVIDsl~~L~ 1172 (2050)
T 3cmu_A 1152 DALARSGAVDVIVVDSVAALT 1172 (2050)
T ss_dssp HHHHHHTCCSEEEESCGGGCC
T ss_pred HHHHHhCCCCEEEECCccccc
Confidence 44433 457899999999984
No 234
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.09 E-value=0.013 Score=55.46 Aligned_cols=27 Identities=19% Similarity=0.192 Sum_probs=23.2
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHHHh
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
+..++|+|++|+||||+++.|++.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 345789999999999999999998754
No 235
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.05 E-value=0.012 Score=55.65 Aligned_cols=25 Identities=28% Similarity=0.383 Sum_probs=21.7
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
+..+.|+||+|+|||||++.|...+
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3467899999999999999999876
No 236
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.05 E-value=0.069 Score=58.19 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=22.3
Q ss_pred CCCeEecCCCCcHHHHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIRIV 336 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~l~ 336 (591)
..++|+|.||+||||+++.|++.+.
T Consensus 36 ~lIvlvGlpGSGKSTia~~La~~L~ 60 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLTRYLN 60 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3578999999999999999999884
No 237
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.05 E-value=0.011 Score=57.72 Aligned_cols=25 Identities=24% Similarity=0.477 Sum_probs=22.2
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
+..++|+||+|+||||+++.|++.+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3467899999999999999999876
No 238
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.03 E-value=0.01 Score=56.36 Aligned_cols=25 Identities=32% Similarity=0.321 Sum_probs=21.6
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
+.-++|+||+|+||||+++.|+..+
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3456799999999999999999865
No 239
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.03 E-value=0.021 Score=58.17 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=21.8
Q ss_pred CCCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 310 TKNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 310 ~~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
.+.-++|+||||+|||+++..++...
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34457899999999999999998764
No 240
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.01 E-value=0.011 Score=56.21 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=22.0
Q ss_pred CCCeEecCCCCcHHHHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIRIV 336 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~l~ 336 (591)
.-+.|+||+|+|||||++.|+..+.
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3457999999999999999999885
No 241
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.97 E-value=0.011 Score=55.72 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=20.1
Q ss_pred CCeEecCCCCcHHHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l 335 (591)
.+.|+|++|+||||+++.|+. +
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-L 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-T
T ss_pred EEEEECCCCcCHHHHHHHHHH-C
Confidence 468999999999999999998 5
No 242
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.95 E-value=0.011 Score=55.02 Aligned_cols=21 Identities=38% Similarity=0.615 Sum_probs=19.0
Q ss_pred CeEecCCCCcHHHHHHHHHHH
Q 007723 314 PILLGESGVGKTAIAEGLAIR 334 (591)
Q Consensus 314 ilL~GppGvGKT~la~~lA~~ 334 (591)
++|+||+|+||||+++.|+..
T Consensus 5 i~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 5 YIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHhcc
Confidence 578999999999999999863
No 243
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.93 E-value=0.02 Score=54.06 Aligned_cols=43 Identities=19% Similarity=0.144 Sum_probs=30.5
Q ss_pred cHHHHHHHHHHHHhcC---CCCCeEecCCCCcHHHHHHHHHHHHHh
Q 007723 295 RETEIQRIIQILCRRT---KNNPILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 295 ~~~~i~~l~~~L~~~~---~~~ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
+++.+..+.+.+.... +.-+.|+|++|+||||+++.|+..+..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~ 48 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLRE 48 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3456666666555422 223568899999999999999998743
No 244
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.90 E-value=0.015 Score=55.29 Aligned_cols=42 Identities=21% Similarity=0.212 Sum_probs=32.7
Q ss_pred CcHHHHHHHHHHHHhcCCCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 294 GRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 294 G~~~~i~~l~~~L~~~~~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
+..+....+...+.......++|+|++|+||||++..++..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 13 ENKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred hcHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 344555666666655666788999999999999999999876
No 245
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.88 E-value=0.01 Score=55.74 Aligned_cols=24 Identities=21% Similarity=0.165 Sum_probs=21.6
Q ss_pred CCCeEecCCCCcHHHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~l 335 (591)
..++|.|++|+||||+++.|++.+
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999876
No 246
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.88 E-value=0.012 Score=56.17 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=21.5
Q ss_pred CCCeEecCCCCcHHHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~l 335 (591)
..+.|+||+|+||||+++.|+..+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999999876
No 247
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.82 E-value=0.066 Score=58.03 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=22.4
Q ss_pred CCeEecCCCCcHHHHHHHHHHHHHh
Q 007723 313 NPILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
.++|+|++|+||||++..|+..+..
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~~ 127 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQR 127 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5789999999999999999988864
No 248
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.82 E-value=0.013 Score=55.06 Aligned_cols=24 Identities=33% Similarity=0.445 Sum_probs=21.0
Q ss_pred CCCeEecCCCCcHHHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~l 335 (591)
.-+.|+||+|+||||+++.|+..+
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 346799999999999999999865
No 249
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.76 E-value=0.013 Score=60.16 Aligned_cols=26 Identities=31% Similarity=0.405 Sum_probs=23.1
Q ss_pred CCCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 310 TKNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 310 ~~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
.+..++|+||+|+||||+++.|+..+
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45678999999999999999999876
No 250
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.74 E-value=0.014 Score=54.79 Aligned_cols=25 Identities=28% Similarity=0.275 Sum_probs=21.6
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
+..+.|+||+|+||||+++.|+..+
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3457899999999999999998865
No 251
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.73 E-value=0.015 Score=54.19 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=21.2
Q ss_pred CCeEecCCCCcHHHHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAIRIV 336 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l~ 336 (591)
-+.|+||+|+||||+++.|+..+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 367999999999999999998763
No 252
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.70 E-value=0.015 Score=55.07 Aligned_cols=26 Identities=31% Similarity=0.565 Sum_probs=22.2
Q ss_pred CCCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 310 TKNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 310 ~~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
.+.-++|+||+|+|||||++.|+...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 34457899999999999999999875
No 253
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.68 E-value=0.017 Score=53.12 Aligned_cols=27 Identities=33% Similarity=0.351 Sum_probs=23.0
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHHHh
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
+..++|+|++|+||||+++.|+..+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 345789999999999999999998743
No 254
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=94.64 E-value=0.3 Score=46.16 Aligned_cols=18 Identities=28% Similarity=0.398 Sum_probs=15.5
Q ss_pred CCCCeEecCCCCcHHHHH
Q 007723 311 KNNPILLGESGVGKTAIA 328 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la 328 (591)
..++++.+|+|+|||...
T Consensus 51 ~~~~lv~~pTGsGKT~~~ 68 (224)
T 1qde_A 51 GHDVLAQAQSGTGKTGTF 68 (224)
T ss_dssp TCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCcHHHHH
Confidence 367999999999999773
No 255
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.60 E-value=0.025 Score=53.86 Aligned_cols=38 Identities=21% Similarity=0.221 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhcCCCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 298 EIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 298 ~i~~l~~~L~~~~~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
....+...+.......++|+|.+|+|||+|+..++...
T Consensus 25 ~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 25 LADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp HHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 34445555544556678999999999999999999876
No 256
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.60 E-value=0.083 Score=55.03 Aligned_cols=36 Identities=14% Similarity=0.301 Sum_probs=28.4
Q ss_pred HHHHHHh-cCCCCCeEecCCCCcHHHHHHHHHHHHHh
Q 007723 302 IIQILCR-RTKNNPILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 302 l~~~L~~-~~~~~ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
+++.+.. ..+..+.|+||+|+|||+|++.|++.+..
T Consensus 164 aID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~ 200 (422)
T 3ice_A 164 VLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAY 200 (422)
T ss_dssp HHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHH
T ss_pred eeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhh
Confidence 4444433 55677899999999999999999998864
No 257
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.54 E-value=0.026 Score=59.73 Aligned_cols=25 Identities=16% Similarity=0.292 Sum_probs=21.2
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
+.-++|+|+||+||||+++.|+..+
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhc
Confidence 3446789999999999999998765
No 258
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.53 E-value=0.018 Score=53.20 Aligned_cols=25 Identities=32% Similarity=0.377 Sum_probs=21.3
Q ss_pred CCCCCeEecCCCCcHHHHHHHHHHH
Q 007723 310 TKNNPILLGESGVGKTAIAEGLAIR 334 (591)
Q Consensus 310 ~~~~ilL~GppGvGKT~la~~lA~~ 334 (591)
....++|+|++|+|||+|++.+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467899999999999999998753
No 259
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.50 E-value=0.067 Score=65.66 Aligned_cols=76 Identities=14% Similarity=0.180 Sum_probs=44.9
Q ss_pred CCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhh-------cccc-------ccchHHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM-------AGAK-------ERGELEARVTTLISE 377 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~-------~g~~-------~~g~~~~~i~~i~~~ 377 (591)
..++|+||||+|||+|+..++..+... +..+..+++.... .|.. .....++ +...++.
T Consensus 733 ~lVlI~G~PG~GKTtLal~lA~~aa~~-------g~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~lee-i~~~l~~ 804 (1706)
T 3cmw_A 733 RIVEIYGPESSGKTTLTLQVIAAAQRE-------GKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQ-ALEICDA 804 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHT-------TCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHH-HHHHHHH
T ss_pred ceEEEECCCCCCcHHHHHHHHHHHHHc-------CCCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHH-HHHHHHH
Confidence 457899999999999999999987643 2234444332111 0100 0012222 2222222
Q ss_pred -HHhcCCeEEEEcCcchhh
Q 007723 378 -IQKSGDVILFIDEVHTLI 395 (591)
Q Consensus 378 -~~~~~~~ILfIDEi~~L~ 395 (591)
+.+....+||||.+..+.
T Consensus 805 lv~~~~~~lVVIDsLq~l~ 823 (1706)
T 3cmw_A 805 LARSGAVDVIVVDSVAALT 823 (1706)
T ss_dssp HHHHTCCSEEEESCSTTCC
T ss_pred HHHccCCCEEEEechhhhc
Confidence 224567899999999986
No 260
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=94.48 E-value=0.29 Score=46.73 Aligned_cols=20 Identities=20% Similarity=0.136 Sum_probs=16.6
Q ss_pred CCCCeEecCCCCcHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEG 330 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~ 330 (591)
..++++.+|+|+|||.....
T Consensus 62 ~~~~li~a~TGsGKT~~~~~ 81 (236)
T 2pl3_A 62 GKDVLGAAKTGSGKTLAFLV 81 (236)
T ss_dssp TCCEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEeCCCCcHHHHHHH
Confidence 46799999999999986543
No 261
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.46 E-value=0.021 Score=53.76 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=20.2
Q ss_pred CeEecCCCCcHHHHHHHHHHHH
Q 007723 314 PILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 314 ilL~GppGvGKT~la~~lA~~l 335 (591)
+.|+|++|+||||+++.|+..+
T Consensus 15 IgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 15 IGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 5689999999999999999976
No 262
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.45 E-value=0.019 Score=53.84 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=21.2
Q ss_pred CCeEecCCCCcHHHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l 335 (591)
.+.|.|++|+||||+++.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999987
No 263
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.40 E-value=0.022 Score=52.39 Aligned_cols=24 Identities=33% Similarity=0.524 Sum_probs=20.6
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIR 334 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~ 334 (591)
...++|+|++|+|||+|++.+...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcC
Confidence 456899999999999999988654
No 264
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=94.35 E-value=0.3 Score=50.07 Aligned_cols=24 Identities=33% Similarity=0.266 Sum_probs=18.9
Q ss_pred cCCCCCeEecCCCCcHHHHHHHHH
Q 007723 309 RTKNNPILLGESGVGKTAIAEGLA 332 (591)
Q Consensus 309 ~~~~~ilL~GppGvGKT~la~~lA 332 (591)
....++++.+|+|+|||..+-..+
T Consensus 42 ~~~~~~lv~a~TGsGKT~~~~~~~ 65 (395)
T 3pey_A 42 NPPRNMIAQSQSGTGKTAAFSLTM 65 (395)
T ss_dssp SSCCCEEEECCTTSCHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHH
Confidence 345789999999999998765443
No 265
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.28 E-value=0.062 Score=57.14 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=23.5
Q ss_pred CCCeEecCCCCcHHHHHHHHHHHHHhC
Q 007723 312 NNPILLGESGVGKTAIAEGLAIRIVQA 338 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~l~~~ 338 (591)
..++++|++|+||||++..||..+...
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 456788999999999999999998653
No 266
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.26 E-value=0.024 Score=55.09 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=21.7
Q ss_pred CCCeEecCCCCcHHHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~l 335 (591)
..+.|.||+|+||||+++.|++.+
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999999987
No 267
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.23 E-value=0.023 Score=54.47 Aligned_cols=26 Identities=27% Similarity=0.377 Sum_probs=22.4
Q ss_pred CCCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 310 TKNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 310 ~~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
.+.-+.|+||+|+|||||++.|+..+
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34557899999999999999999866
No 268
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.23 E-value=0.036 Score=54.18 Aligned_cols=44 Identities=18% Similarity=0.208 Sum_probs=29.0
Q ss_pred CCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhh
Q 007723 313 NPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLM 358 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~ 358 (591)
.|.|.|++|+||||+++.|+..+....+. ..+..+..+++..+.
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~lg~~~~d--~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQLLGQNEVD--YRQKQVVILSQDSFY 67 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGGGSC--GGGCSEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhhccc--ccCCceEEEecCccc
Confidence 46799999999999999999976321000 113344556666554
No 269
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=94.20 E-value=0.35 Score=45.89 Aligned_cols=20 Identities=25% Similarity=0.247 Sum_probs=16.5
Q ss_pred CCCCeEecCCCCcHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEG 330 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~ 330 (591)
+.++++.+|+|+|||.....
T Consensus 57 ~~~~l~~apTGsGKT~~~~l 76 (228)
T 3iuy_A 57 GIDLIVVAQTGTGKTLSYLM 76 (228)
T ss_dssp TCCEEEECCTTSCHHHHHHH
T ss_pred CCCEEEECCCCChHHHHHHH
Confidence 46899999999999976543
No 270
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=94.19 E-value=0.41 Score=51.48 Aligned_cols=25 Identities=24% Similarity=0.190 Sum_probs=21.1
Q ss_pred CCCeEecCCCCcHHHHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIRIV 336 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~l~ 336 (591)
.+.+++||.|+|||..+..++....
T Consensus 129 ~~~ll~~~tGsGKT~~~~~~~~~~~ 153 (510)
T 2oca_A 129 RRRILNLPTSAGRSLIQALLARYYL 153 (510)
T ss_dssp SEEEEECCSTTTHHHHHHHHHHHHH
T ss_pred CCcEEEeCCCCCHHHHHHHHHHHHH
Confidence 5689999999999999977776654
No 271
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=94.19 E-value=0.3 Score=46.56 Aligned_cols=18 Identities=33% Similarity=0.447 Sum_probs=15.6
Q ss_pred CCCCeEecCCCCcHHHHH
Q 007723 311 KNNPILLGESGVGKTAIA 328 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la 328 (591)
+.++++.+|+|+|||...
T Consensus 61 ~~~~l~~a~TGsGKT~~~ 78 (230)
T 2oxc_A 61 GLDLIVQAKSGTGKTCVF 78 (230)
T ss_dssp TCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCcHHHHH
Confidence 468999999999999764
No 272
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=94.18 E-value=0.17 Score=57.81 Aligned_cols=42 Identities=24% Similarity=0.291 Sum_probs=32.0
Q ss_pred CCcHHHHHHHHHHHHhcCCCCCeEecCCCCcHHHHHHHHHHH
Q 007723 293 IGRETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIR 334 (591)
Q Consensus 293 vG~~~~i~~l~~~L~~~~~~~ilL~GppGvGKT~la~~lA~~ 334 (591)
-.|...+..+..-+......++++.||.|+|||..+-..+..
T Consensus 371 ~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~ 412 (780)
T 1gm5_A 371 NAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILD 412 (780)
T ss_dssp HHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHH
Confidence 346667777777666666679999999999999987665543
No 273
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.15 E-value=0.012 Score=55.67 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=21.2
Q ss_pred CeEecCCCCcHHHHHHHHHHHHH
Q 007723 314 PILLGESGVGKTAIAEGLAIRIV 336 (591)
Q Consensus 314 ilL~GppGvGKT~la~~lA~~l~ 336 (591)
++|.|++|+||||+++.|+..+.
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999884
No 274
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.12 E-value=0.021 Score=60.82 Aligned_cols=26 Identities=42% Similarity=0.477 Sum_probs=23.1
Q ss_pred CCCeEecCCCCcHHHHHHHHHHHHHh
Q 007723 312 NNPILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
..++|+|++|+||||++..||..+..
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~ 125 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQK 125 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46789999999999999999998754
No 275
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.03 E-value=0.075 Score=53.56 Aligned_cols=26 Identities=35% Similarity=0.360 Sum_probs=22.4
Q ss_pred CCCeEecCCCCcHHHHHHHHHHHHHh
Q 007723 312 NNPILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
..++++|++|+||||++..||..+..
T Consensus 99 ~vi~i~G~~G~GKTT~~~~la~~~~~ 124 (297)
T 1j8m_F 99 YVIMLVGVQGTGKTTTAGKLAYFYKK 124 (297)
T ss_dssp EEEEEECSSCSSTTHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34678899999999999999998854
No 276
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.01 E-value=0.024 Score=53.66 Aligned_cols=25 Identities=36% Similarity=0.472 Sum_probs=21.9
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
+.-+.|+||+|+|||||++.|+..+
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4456799999999999999999876
No 277
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=94.01 E-value=0.041 Score=58.48 Aligned_cols=19 Identities=26% Similarity=0.237 Sum_probs=16.4
Q ss_pred eEecCCCCcHHHHHHHHHH
Q 007723 315 ILLGESGVGKTAIAEGLAI 333 (591)
Q Consensus 315 lL~GppGvGKT~la~~lA~ 333 (591)
++.|+||+|||+++..++.
T Consensus 165 ~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 165 LVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp EEEECTTSCHHHHHHHHCC
T ss_pred EEEcCCCCCHHHHHHHHhc
Confidence 6889999999999987653
No 278
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.98 E-value=0.024 Score=54.50 Aligned_cols=26 Identities=23% Similarity=0.249 Sum_probs=22.1
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRIV 336 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l~ 336 (591)
+.-++|+||+|+|||||++.|+..+.
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 34567999999999999999998763
No 279
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=93.97 E-value=0.05 Score=56.76 Aligned_cols=27 Identities=26% Similarity=0.222 Sum_probs=23.2
Q ss_pred cCCCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 309 RTKNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 309 ~~~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
+.+..++|+||+|+||||+++.|+...
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 445567899999999999999999865
No 280
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=93.94 E-value=0.097 Score=62.59 Aligned_cols=40 Identities=23% Similarity=0.424 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHhcCCCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 296 ETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 296 ~~~i~~l~~~L~~~~~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
...+..+..-+....+.+++++||.|+|||.++...+...
T Consensus 609 ~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~ 648 (1151)
T 2eyq_A 609 AQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLA 648 (1151)
T ss_dssp HHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHH
Confidence 3344444443333444589999999999998876555443
No 281
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.94 E-value=0.023 Score=53.47 Aligned_cols=21 Identities=38% Similarity=0.284 Sum_probs=19.0
Q ss_pred CCeEecCCCCcHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAI 333 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~ 333 (591)
.+.|+|++|+||||+++.|+.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999999987
No 282
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.93 E-value=0.022 Score=52.22 Aligned_cols=19 Identities=37% Similarity=0.583 Sum_probs=16.7
Q ss_pred CCeEecCCCCcHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGL 331 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~l 331 (591)
-+.|+||+|+||||+++.+
T Consensus 11 i~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4679999999999999963
No 283
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=93.93 E-value=0.1 Score=53.43 Aligned_cols=27 Identities=26% Similarity=0.284 Sum_probs=23.0
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHHHh
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
+.-+.|+||+|+||||+++.|+..+..
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~l~~ 155 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANWLKN 155 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 344679999999999999999998754
No 284
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.91 E-value=0.026 Score=55.35 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=22.0
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
+..+.|+||+|+||||+++.|++.+
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhc
Confidence 3457799999999999999999877
No 285
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.90 E-value=0.027 Score=51.25 Aligned_cols=26 Identities=31% Similarity=0.426 Sum_probs=22.6
Q ss_pred CCCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 310 TKNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 310 ~~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
.+.-+.|+||.|+|||||++.|+..+
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 33456799999999999999999987
No 286
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=93.89 E-value=0.11 Score=58.07 Aligned_cols=40 Identities=23% Similarity=0.415 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHhcCCCCCeEecCCCCcHHHHHHHHHHHHHh
Q 007723 296 ETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 296 ~~~i~~l~~~L~~~~~~~ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
+...+.+..+|.. ..-.|+.||||||||+++-.+...+..
T Consensus 192 ~~Q~~AV~~al~~--~~~~lI~GPPGTGKT~ti~~~I~~l~~ 231 (646)
T 4b3f_X 192 TSQKEAVLFALSQ--KELAIIHGPPGTGKTTTVVEIILQAVK 231 (646)
T ss_dssp HHHHHHHHHHHHC--SSEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC--CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3455566666643 234588999999999866655555543
No 287
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.87 E-value=0.026 Score=53.25 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=21.3
Q ss_pred CCeEecCCCCcHHHHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAIRIV 336 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l~ 336 (591)
-+.|+||+|+||||+++.|+..+.
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 467999999999999999999873
No 288
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=93.87 E-value=0.33 Score=46.62 Aligned_cols=19 Identities=21% Similarity=0.223 Sum_probs=15.8
Q ss_pred CCCCeEecCCCCcHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAE 329 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~ 329 (591)
..++++.+|+|+|||....
T Consensus 66 ~~~~l~~a~TGsGKT~~~~ 84 (245)
T 3dkp_A 66 GRELLASAPTGSGKTLAFS 84 (245)
T ss_dssp TCCEEEECCTTSCHHHHHH
T ss_pred CCCEEEECCCCCcHHHHHH
Confidence 4579999999999998643
No 289
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.86 E-value=0.081 Score=53.88 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=21.6
Q ss_pred CeEecCCCCcHHHHHHHHHHHHHh
Q 007723 314 PILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 314 ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
++|+|++|+||||++..||..+..
T Consensus 108 I~ivG~~G~GKTT~~~~LA~~l~~ 131 (320)
T 1zu4_A 108 FMLVGVNGTGKTTSLAKMANYYAE 131 (320)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 578899999999999999998864
No 290
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=93.85 E-value=0.19 Score=51.50 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=22.2
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRIV 336 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l~ 336 (591)
...+.|+|+||+|||||++.|+..+.
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~g~~~ 80 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALGSLLT 80 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhh
Confidence 34567999999999999999998764
No 291
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.83 E-value=0.035 Score=60.23 Aligned_cols=46 Identities=7% Similarity=-0.006 Sum_probs=32.9
Q ss_pred ccCCcHHHHHHHHHHH--HhcCCCCCeEecCCCCcHHHHHHHHHHHHH
Q 007723 291 PVIGRETEIQRIIQIL--CRRTKNNPILLGESGVGKTAIAEGLAIRIV 336 (591)
Q Consensus 291 ~vvG~~~~i~~l~~~L--~~~~~~~ilL~GppGvGKT~la~~lA~~l~ 336 (591)
+..-+.+..+.+.+.. .......++|.|.+|+||||++++|++.+.
T Consensus 373 ~~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 373 EWFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp TTTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred ccccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHH
Confidence 4555565555555543 122345678999999999999999999995
No 292
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=93.81 E-value=0.15 Score=51.67 Aligned_cols=27 Identities=26% Similarity=0.309 Sum_probs=22.4
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHHHh
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
+.-++|.|+||+|||+++..++..+..
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~ 94 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSD 94 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 344688899999999999999987654
No 293
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=93.81 E-value=0.45 Score=49.10 Aligned_cols=21 Identities=38% Similarity=0.381 Sum_probs=17.5
Q ss_pred cCCCCCeEecCCCCcHHHHHH
Q 007723 309 RTKNNPILLGESGVGKTAIAE 329 (591)
Q Consensus 309 ~~~~~ilL~GppGvGKT~la~ 329 (591)
....++++.+|+|+|||..+-
T Consensus 62 ~~~~~~lv~apTGsGKT~~~~ 82 (412)
T 3fht_A 62 EPPQNLIAQSQSGTGKTAAFV 82 (412)
T ss_dssp SSCCCEEEECCTTSCHHHHHH
T ss_pred CCCCeEEEECCCCchHHHHHH
Confidence 345789999999999998753
No 294
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=93.79 E-value=0.39 Score=48.01 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=18.4
Q ss_pred CCCCeEecCCCCcHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAI 333 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~ 333 (591)
..++++.+|+|+|||..+...+.
T Consensus 31 ~~~~lv~~~TGsGKT~~~~~~~~ 53 (337)
T 2z0m_A 31 GKNVVVRAKTGSGKTAAYAIPIL 53 (337)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEcCCCCcHHHHHHHHHH
Confidence 45899999999999987655543
No 295
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=93.76 E-value=0.037 Score=52.59 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=21.6
Q ss_pred CCCeEecCCCCcHHHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~l 335 (591)
..+.|+|++|+||||+++.|+..+
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 357899999999999999999977
No 296
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.76 E-value=0.03 Score=53.23 Aligned_cols=21 Identities=33% Similarity=0.419 Sum_probs=19.2
Q ss_pred CCeEecCCCCcHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAI 333 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~ 333 (591)
.+.|.|++|+||||+++.|+.
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999987
No 297
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=93.74 E-value=0.072 Score=54.06 Aligned_cols=79 Identities=18% Similarity=0.229 Sum_probs=45.3
Q ss_pred CCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhhhc-------ccc-------ccchHHHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLLMA-------GAK-------ERGELEARVTTLISEI 378 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l~~-------g~~-------~~g~~~~~i~~i~~~~ 378 (591)
-++|+||||+|||+|+..++....... .+..++++|...-.. |.. .....++..-.+++.+
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g-----~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQY-----PDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHC-----TTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcC-----CCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 367899999999999888877765420 133445555432110 100 0012333212233333
Q ss_pred ---HhcCCeEEEEcCcchhhc
Q 007723 379 ---QKSGDVILFIDEVHTLIG 396 (591)
Q Consensus 379 ---~~~~~~ILfIDEi~~L~~ 396 (591)
....+.+|+||=|..|..
T Consensus 105 ~~i~~~~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGNLAS 125 (333)
T ss_dssp HTCCTTCCEEEEEECSTTCBC
T ss_pred HHhhccCceEEEEeccccccc
Confidence 345688999999999974
No 298
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=93.73 E-value=0.37 Score=46.19 Aligned_cols=20 Identities=35% Similarity=0.292 Sum_probs=16.3
Q ss_pred CCCCeEecCCCCcHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEG 330 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~ 330 (591)
..++++++|+|+|||...-.
T Consensus 67 ~~~~li~apTGsGKT~~~~l 86 (237)
T 3bor_A 67 GYDVIAQAQSGTGKTATFAI 86 (237)
T ss_dssp TCCEEECCCSSHHHHHHHHH
T ss_pred CCCEEEECCCCCcHHHHHHH
Confidence 46799999999999976433
No 299
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.66 E-value=0.024 Score=53.60 Aligned_cols=24 Identities=38% Similarity=0.464 Sum_probs=21.3
Q ss_pred CCCeEecCCCCcHHHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~l 335 (591)
..++|.||+|+|||+++..|+++.
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 458999999999999999998864
No 300
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=93.64 E-value=0.044 Score=48.82 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=20.0
Q ss_pred CCeEecCCCCcHHHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l 335 (591)
.++++|++|+|||+|++.+...-
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999997643
No 301
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.62 E-value=0.039 Score=51.75 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=21.7
Q ss_pred CCeEecCCCCcHHHHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAIRIV 336 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l~ 336 (591)
.+.|+||+|+||||+++.|+..+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 467999999999999999999875
No 302
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.56 E-value=0.03 Score=56.12 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=20.0
Q ss_pred CCeEecCCCCcHHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAIR 334 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~ 334 (591)
.++|.|+||+||||+++.|+..
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4689999999999999999985
No 303
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.54 E-value=0.042 Score=53.12 Aligned_cols=25 Identities=20% Similarity=0.240 Sum_probs=22.2
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
+..+.|+|++|+||||+++.|+..+
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3457899999999999999999977
No 304
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=93.54 E-value=0.16 Score=55.57 Aligned_cols=46 Identities=22% Similarity=0.164 Sum_probs=30.6
Q ss_pred cCCcHHHHHHHHHHHH--hcCCCCCeEecCCCCcHHHHHHHHHHHHHh
Q 007723 292 VIGRETEIQRIIQILC--RRTKNNPILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 292 vvG~~~~i~~l~~~L~--~~~~~~ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
..-+.+..+.+.+... ......++|+|++|+||||+++.|++.+..
T Consensus 351 ~~~r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~ 398 (546)
T 2gks_A 351 WFTRPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQA 398 (546)
T ss_dssp TTSCHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhh
Confidence 3444544444444331 122345678999999999999999998754
No 305
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.53 E-value=0.046 Score=50.22 Aligned_cols=34 Identities=26% Similarity=0.451 Sum_probs=26.6
Q ss_pred HHHHHHHHHhcCCCCCeEecCCCCcHHHHHHHHHH
Q 007723 299 IQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAI 333 (591)
Q Consensus 299 i~~l~~~L~~~~~~~ilL~GppGvGKT~la~~lA~ 333 (591)
+..+.+ +.......++++|++|+|||+|++.+..
T Consensus 5 ~~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 5 FTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp HHHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred HHHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhc
Confidence 344555 4555667899999999999999999874
No 306
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.52 E-value=0.11 Score=55.82 Aligned_cols=27 Identities=22% Similarity=0.229 Sum_probs=23.5
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHHHh
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
+..++|+|.||+||||+++.|++.+..
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~ 65 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNF 65 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 446889999999999999999998753
No 307
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.52 E-value=0.027 Score=52.57 Aligned_cols=23 Identities=26% Similarity=0.192 Sum_probs=20.3
Q ss_pred CCCeEecCCCCcHHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIR 334 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~ 334 (591)
..+.|+|++|+||||+++.|++.
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 34679999999999999999984
No 308
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.51 E-value=0.035 Score=53.66 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=22.1
Q ss_pred CCCeEecCCCCcHHHHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIRIV 336 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~l~ 336 (591)
.-++|.|++|+||||+++.|+..+.
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 3467889999999999999999884
No 309
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=93.50 E-value=0.24 Score=49.66 Aligned_cols=20 Identities=40% Similarity=0.431 Sum_probs=16.5
Q ss_pred cCCCCCeEecCCCCcHHHHH
Q 007723 309 RTKNNPILLGESGVGKTAIA 328 (591)
Q Consensus 309 ~~~~~ilL~GppGvGKT~la 328 (591)
....++++++|+|+|||...
T Consensus 129 ~~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 129 EPPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp SSCCCEEEECCTTSSHHHHH
T ss_pred CCCCeEEEECCCCCCccHHH
Confidence 34578999999999999763
No 310
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.48 E-value=0.068 Score=57.54 Aligned_cols=25 Identities=36% Similarity=0.469 Sum_probs=21.9
Q ss_pred CCeEecCCCCcHHHHHHHHHHHHHh
Q 007723 313 NPILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
-+.|+|++|+||||+++.|+..+..
T Consensus 295 VI~LVGpNGSGKTTLl~~LAgll~~ 319 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIGKLARQFEQ 319 (503)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCcccHHHHHHHHHHHhhh
Confidence 3579999999999999999998754
No 311
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=93.43 E-value=0.61 Score=47.11 Aligned_cols=25 Identities=28% Similarity=0.256 Sum_probs=19.6
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
..++++.+|+|+|||..+...+...
T Consensus 44 ~~~~l~~~~TGsGKT~~~~~~~~~~ 68 (367)
T 1hv8_A 44 EYNIVAQARTGSGKTASFAIPLIEL 68 (367)
T ss_dssp CSEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CCCEEEECCCCChHHHHHHHHHHHH
Confidence 3578999999999999876655443
No 312
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.40 E-value=0.038 Score=55.96 Aligned_cols=30 Identities=20% Similarity=0.318 Sum_probs=25.1
Q ss_pred cCCCCCeEecCCCCcHHHHHHHHHHHHHhCC
Q 007723 309 RTKNNPILLGESGVGKTAIAEGLAIRIVQAE 339 (591)
Q Consensus 309 ~~~~~ilL~GppGvGKT~la~~lA~~l~~~~ 339 (591)
+.+..+.|+||+|+|||||++.|+..+ .|.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~-~G~ 153 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL-GGS 153 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH-TCE
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc-Cce
Confidence 455667899999999999999999987 443
No 313
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=93.33 E-value=0.28 Score=45.65 Aligned_cols=19 Identities=16% Similarity=0.237 Sum_probs=16.0
Q ss_pred CCCCeEecCCCCcHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAE 329 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~ 329 (591)
..++++.+|+|+|||..+.
T Consensus 40 ~~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 40 GRDILARAKNGTGKSGAYL 58 (206)
T ss_dssp TCCEEEECCSSSTTHHHHH
T ss_pred CCCEEEECCCCCchHHHHH
Confidence 3689999999999997554
No 314
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=93.30 E-value=0.052 Score=50.01 Aligned_cols=23 Identities=26% Similarity=0.214 Sum_probs=20.1
Q ss_pred CCCeEecCCCCcHHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIR 334 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~ 334 (591)
-.++|+|++|+|||+|++.+...
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999998753
No 315
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=93.30 E-value=0.4 Score=45.14 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=19.2
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
..++++.+|+|+|||..+...+...
T Consensus 51 ~~~~li~~~TGsGKT~~~~~~~~~~ 75 (220)
T 1t6n_A 51 GMDVLCQAKSGMGKTAVFVLATLQQ 75 (220)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCchhhhhhHHHHHh
Confidence 3679999999999998766555443
No 316
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.27 E-value=0.07 Score=53.57 Aligned_cols=24 Identities=17% Similarity=0.286 Sum_probs=21.2
Q ss_pred CeEecCCCCcHHHHHHHHHHHHHh
Q 007723 314 PILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 314 ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
+.|.|++|+||||+++.|+..+..
T Consensus 34 i~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 34 IFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhhh
Confidence 468899999999999999998853
No 317
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.21 E-value=0.028 Score=53.56 Aligned_cols=24 Identities=33% Similarity=0.401 Sum_probs=21.2
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIR 334 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~ 334 (591)
+.-+.|+||+|+|||||++.|+..
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 445789999999999999999886
No 318
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=93.19 E-value=0.11 Score=50.33 Aligned_cols=23 Identities=22% Similarity=0.164 Sum_probs=18.8
Q ss_pred eEecCCCCcHHHHHHHHHHHHHh
Q 007723 315 ILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 315 lL~GppGvGKT~la~~lA~~l~~ 337 (591)
+++|+.|+||||.+-..+.....
T Consensus 23 v~~G~MgsGKTT~lL~~~~r~~~ 45 (234)
T 2orv_A 23 VILGPMFSGKSTELMRRVRRFQI 45 (234)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHT
T ss_pred EEECCCCCcHHHHHHHHHHHHHH
Confidence 67899999999888777776644
No 319
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.19 E-value=0.041 Score=54.93 Aligned_cols=21 Identities=38% Similarity=0.395 Sum_probs=19.0
Q ss_pred CCeEecCCCCcHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAI 333 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~ 333 (591)
.|.|+|++|+||||+++.|+.
T Consensus 77 iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999994
No 320
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.17 E-value=0.031 Score=52.69 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=20.2
Q ss_pred CCeEecCCCCcHHHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l 335 (591)
.+.|+|++|+||||+++.|+..+
T Consensus 23 ~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 23 IIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 45799999999999999999754
No 321
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=93.17 E-value=0.074 Score=56.26 Aligned_cols=38 Identities=13% Similarity=0.235 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhcCCCCCeEecCCCCcHHHHHHHHHHHHH
Q 007723 298 EIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIV 336 (591)
Q Consensus 298 ~i~~l~~~L~~~~~~~ilL~GppGvGKT~la~~lA~~l~ 336 (591)
....+..++ ......++|+||+|+||||+++++...+.
T Consensus 155 ~~~~L~~l~-~~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 155 NHDNFRRLI-KRPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp HHHHHHHHH-TSSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred HHHHHHHHH-HhcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 333444443 34445678999999999999999999874
No 322
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.14 E-value=0.11 Score=52.21 Aligned_cols=26 Identities=38% Similarity=0.383 Sum_probs=22.5
Q ss_pred CCCeEecCCCCcHHHHHHHHHHHHHh
Q 007723 312 NNPILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
..+.|+|++|+||||++..+|..+..
T Consensus 99 ~~i~i~g~~G~GKTT~~~~la~~~~~ 124 (295)
T 1ls1_A 99 NLWFLVGLQGSGKTTTAAKLALYYKG 124 (295)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34678899999999999999998864
No 323
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=93.14 E-value=0.017 Score=55.25 Aligned_cols=24 Identities=17% Similarity=-0.017 Sum_probs=16.8
Q ss_pred CeEecCCCCcHHHHHHHHHHHHHh
Q 007723 314 PILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 314 ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
.+++||-|+||||.+-..+.....
T Consensus 31 ~vitG~M~sGKTT~Llr~~~r~~~ 54 (219)
T 3e2i_A 31 ECITGSMFSGKSEELIRRLRRGIY 54 (219)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 378899999999955444555433
No 324
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.08 E-value=0.06 Score=49.54 Aligned_cols=26 Identities=27% Similarity=0.252 Sum_probs=22.6
Q ss_pred CCCeEecCCCCcHHHHHHHHHHHHHh
Q 007723 312 NNPILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
.-+.|.|++|+||||++..|+..+..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 34679999999999999999998854
No 325
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=93.06 E-value=0.049 Score=51.57 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=20.7
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIR 334 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~ 334 (591)
...++|+|++|+|||+|++.+...
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 456899999999999999988654
No 326
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.03 E-value=0.045 Score=51.64 Aligned_cols=26 Identities=23% Similarity=0.267 Sum_probs=22.3
Q ss_pred CCCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 310 TKNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 310 ~~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
...+++|+|++|+|||+|+..+....
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45678999999999999999988754
No 327
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.02 E-value=0.07 Score=54.36 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=20.3
Q ss_pred CeEecCCCCcHHHHHHHHHHHHH
Q 007723 314 PILLGESGVGKTAIAEGLAIRIV 336 (591)
Q Consensus 314 ilL~GppGvGKT~la~~lA~~l~ 336 (591)
+.|.||+|+||||+++.|+..+.
T Consensus 95 igI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 45889999999999999998774
No 328
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.00 E-value=0.029 Score=53.96 Aligned_cols=24 Identities=33% Similarity=0.344 Sum_probs=15.0
Q ss_pred CCCeEecCCCCcHHHHHHHHH-HHH
Q 007723 312 NNPILLGESGVGKTAIAEGLA-IRI 335 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA-~~l 335 (591)
.-+.|+||+|+||||+++.|+ ..+
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 446799999999999999999 754
No 329
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=92.98 E-value=0.076 Score=53.07 Aligned_cols=27 Identities=19% Similarity=0.254 Sum_probs=23.1
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHHHh
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
+.-++|+||||+|||||++.++..+..
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~ 61 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGT 61 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 445689999999999999999998754
No 330
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=92.98 E-value=0.096 Score=57.76 Aligned_cols=39 Identities=26% Similarity=0.272 Sum_probs=28.3
Q ss_pred CCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeehhhh
Q 007723 313 NPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDMGLL 357 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~~~l 357 (591)
.++|+|.+|+||||+++.|++.+...+ +..++.+|...+
T Consensus 398 ~I~l~GlsGSGKSTiA~~La~~L~~~G------~~~~~~lD~D~i 436 (573)
T 1m8p_A 398 TIFLTGYMNSGKDAIARALQVTLNQQG------GRSVSLLLGDTV 436 (573)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHC------SSCEEEEEHHHH
T ss_pred EEEeecCCCCCHHHHHHHHHHHhcccC------CceEEEECcHHH
Confidence 467899999999999999999984311 144566665443
No 331
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=92.83 E-value=0.048 Score=50.84 Aligned_cols=22 Identities=32% Similarity=0.647 Sum_probs=19.7
Q ss_pred CCeEecCCCCcHHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAIR 334 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~ 334 (591)
.++|+|++|+|||||++.+...
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4789999999999999999864
No 332
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=92.83 E-value=1 Score=43.60 Aligned_cols=19 Identities=37% Similarity=0.410 Sum_probs=16.1
Q ss_pred CCCCeEecCCCCcHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAE 329 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~ 329 (591)
..++++.+|+|+|||...-
T Consensus 80 ~~~~lv~a~TGsGKT~~~~ 98 (249)
T 3ber_A 80 GRDIIGLAETGSGKTGAFA 98 (249)
T ss_dssp TCCEEEECCTTSCHHHHHH
T ss_pred CCCEEEEcCCCCCchhHhH
Confidence 4689999999999998644
No 333
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=92.81 E-value=0.061 Score=50.57 Aligned_cols=26 Identities=19% Similarity=0.243 Sum_probs=21.0
Q ss_pred CCCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 310 TKNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 310 ~~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
....++|+|++|+|||+|+..+...-
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34578999999999999999987643
No 334
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=92.78 E-value=0.045 Score=50.80 Aligned_cols=23 Identities=30% Similarity=0.580 Sum_probs=20.1
Q ss_pred CCeEecCCCCcHHHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l 335 (591)
.++|+|++|+|||||++.++...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999988753
No 335
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.75 E-value=0.056 Score=49.98 Aligned_cols=26 Identities=23% Similarity=0.207 Sum_probs=22.5
Q ss_pred CCCeEecCCCCcHHHHHHHHHHHHHh
Q 007723 312 NNPILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
+-++|+|++|+||||+++.|...+..
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 45679999999999999999988754
No 336
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.73 E-value=0.055 Score=54.77 Aligned_cols=27 Identities=26% Similarity=0.327 Sum_probs=23.0
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHHHh
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
+..+.|+||+|+||||+++.|+..+..
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~ 128 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQN 128 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 345679999999999999999998753
No 337
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=92.67 E-value=0.049 Score=48.29 Aligned_cols=22 Identities=23% Similarity=0.517 Sum_probs=19.7
Q ss_pred CCeEecCCCCcHHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAIR 334 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~ 334 (591)
.++++|++|+|||+|++.+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999764
No 338
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=92.66 E-value=0.11 Score=57.41 Aligned_cols=42 Identities=21% Similarity=0.380 Sum_probs=30.2
Q ss_pred cHHHHHHHHHHHHhcCCCCCeEecCCCCcHHHHHHHHHHHHHh
Q 007723 295 RETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 295 ~~~~i~~l~~~L~~~~~~~ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
|...+..+.+.+.. ...++++++|.|+|||..+-.++..+..
T Consensus 183 Q~~ai~~~~~~~~~-~~~~~ll~~~TGsGKT~~~~~~~~~l~~ 224 (590)
T 3h1t_A 183 QQIAINRAVQSVLQ-GKKRSLITMATGTGKTVVAFQISWKLWS 224 (590)
T ss_dssp HHHHHHHHHHHHHT-TCSEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-CCCceEEEecCCCChHHHHHHHHHHHHh
Confidence 44455555554433 3466899999999999998888877754
No 339
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=92.65 E-value=0.051 Score=49.00 Aligned_cols=21 Identities=33% Similarity=0.495 Sum_probs=19.1
Q ss_pred CCeEecCCCCcHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAI 333 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~ 333 (591)
.++|+|++|+|||+|++.+..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999999975
No 340
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=92.64 E-value=0.058 Score=53.54 Aligned_cols=29 Identities=28% Similarity=0.357 Sum_probs=24.3
Q ss_pred CCCCCeEecCCCCcHHHHHHHHHHHHHhC
Q 007723 310 TKNNPILLGESGVGKTAIAEGLAIRIVQA 338 (591)
Q Consensus 310 ~~~~ilL~GppGvGKT~la~~lA~~l~~~ 338 (591)
...-++|+||+|+|||||+..++..+..+
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~~g 57 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIAGG 57 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHTC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHhcC
Confidence 44567899999999999999999877654
No 341
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.59 E-value=0.034 Score=50.69 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=20.6
Q ss_pred cCCCCCeEecCCCCcHHHHHHHHH
Q 007723 309 RTKNNPILLGESGVGKTAIAEGLA 332 (591)
Q Consensus 309 ~~~~~ilL~GppGvGKT~la~~lA 332 (591)
.....++++|++|+|||+|++.+.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCccEEEEECCCCCCHHHHHHHHh
Confidence 445678999999999999998875
No 342
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=92.57 E-value=0.043 Score=50.43 Aligned_cols=21 Identities=29% Similarity=0.582 Sum_probs=19.1
Q ss_pred CCeEecCCCCcHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAI 333 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~ 333 (591)
.++|+|++|||||+|++.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999875
No 343
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=92.56 E-value=0.052 Score=48.42 Aligned_cols=23 Identities=17% Similarity=0.382 Sum_probs=20.3
Q ss_pred CCCeEecCCCCcHHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIR 334 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~ 334 (591)
-.++++|++|+|||+|++.+...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999998764
No 344
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.55 E-value=0.059 Score=52.41 Aligned_cols=23 Identities=17% Similarity=0.211 Sum_probs=20.7
Q ss_pred CCeEecCCCCcHHHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l 335 (591)
-+.|.||+|+||||+++.|+..+
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 35699999999999999999876
No 345
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=92.54 E-value=0.19 Score=53.59 Aligned_cols=26 Identities=27% Similarity=0.286 Sum_probs=22.4
Q ss_pred CCCeEecCCCCcHHHHHHHHHHHHHh
Q 007723 312 NNPILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
.-++|.|+||+|||+++..+|..+..
T Consensus 198 ~liiIaG~pG~GKTtlal~ia~~~a~ 223 (444)
T 3bgw_A 198 NFVLIAARPSMGKTAFALKQAKNMSD 223 (444)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHH
Confidence 34678899999999999999988765
No 346
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=92.51 E-value=0.053 Score=48.16 Aligned_cols=22 Identities=32% Similarity=0.604 Sum_probs=19.5
Q ss_pred CCeEecCCCCcHHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAIR 334 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~ 334 (591)
.++|+|++|+|||+|++.+...
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999988753
No 347
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=92.48 E-value=0.36 Score=49.98 Aligned_cols=22 Identities=32% Similarity=0.222 Sum_probs=17.3
Q ss_pred CCCCeEecCCCCcHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLA 332 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA 332 (591)
..++++.+|+|+|||..+...+
T Consensus 77 ~~~~lv~a~TGsGKT~~~~~~~ 98 (414)
T 3eiq_A 77 GYDVIAQAQSGTGKTATFAISI 98 (414)
T ss_dssp TCCEEECCCSCSSSHHHHHHHH
T ss_pred CCCEEEECCCCCcccHHHHHHH
Confidence 4569999999999998754433
No 348
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=92.47 E-value=0.095 Score=51.50 Aligned_cols=23 Identities=26% Similarity=0.521 Sum_probs=20.1
Q ss_pred CCCeEecCCCCcHHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIR 334 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~ 334 (591)
+.++|+|+||+|||+|.+.+...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 45889999999999999998654
No 349
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.44 E-value=0.062 Score=49.48 Aligned_cols=25 Identities=24% Similarity=0.302 Sum_probs=21.3
Q ss_pred CCCCCeEecCCCCcHHHHHHHHHHH
Q 007723 310 TKNNPILLGESGVGKTAIAEGLAIR 334 (591)
Q Consensus 310 ~~~~ilL~GppGvGKT~la~~lA~~ 334 (591)
....++|+|++|+|||+|+..+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457899999999999999998764
No 350
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=92.43 E-value=0.052 Score=53.92 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=20.9
Q ss_pred CCeEecCCCCcHHHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l 335 (591)
++.|+||+|+|||||++.|+...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999875
No 351
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=92.42 E-value=0.059 Score=49.45 Aligned_cols=24 Identities=21% Similarity=0.455 Sum_probs=21.0
Q ss_pred CCeEecCCCCcHHHHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAIRIV 336 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l~ 336 (591)
-.+|+||.|+|||+++++|...+.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 357999999999999999998763
No 352
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=92.40 E-value=0.081 Score=50.54 Aligned_cols=26 Identities=31% Similarity=0.337 Sum_probs=22.6
Q ss_pred CCeEecCCCCcHHHHHHHHHHHHHhC
Q 007723 313 NPILLGESGVGKTAIAEGLAIRIVQA 338 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l~~~ 338 (591)
-++|.|++|+||||+++.|+..+...
T Consensus 8 ~i~~eG~~gsGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 8 FVTLEGPEGAGKSTNRDYLAERLRER 33 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 46788999999999999999998643
No 353
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=92.38 E-value=0.052 Score=48.84 Aligned_cols=22 Identities=45% Similarity=0.640 Sum_probs=19.3
Q ss_pred CCCeEecCCCCcHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAI 333 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~ 333 (591)
..++|+|++|+|||+|++.+..
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCccHHHHHHHHhc
Confidence 3589999999999999998864
No 354
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=92.37 E-value=0.18 Score=56.04 Aligned_cols=26 Identities=35% Similarity=0.378 Sum_probs=22.9
Q ss_pred CCCeEecCCCCcHHHHHHHHHHHHHh
Q 007723 312 NNPILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
..|+|+|.||+||||+++.|++.+..
T Consensus 53 ~lIvLtGlsGSGKSTlAr~La~~L~~ 78 (630)
T 1x6v_B 53 CTVWLTGLSGAGKTTVSMALEEYLVC 78 (630)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 34789999999999999999998854
No 355
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.37 E-value=0.062 Score=54.58 Aligned_cols=25 Identities=24% Similarity=0.221 Sum_probs=21.7
Q ss_pred CCeEecCCCCcHHHHHHHHHHHHHh
Q 007723 313 NPILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
-+.|.||+|+|||||++.|+..+..
T Consensus 92 ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 92 IIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred EEEEECCCCchHHHHHHHHHhhccc
Confidence 3568999999999999999998753
No 356
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=92.36 E-value=0.053 Score=48.01 Aligned_cols=22 Identities=32% Similarity=0.564 Sum_probs=19.7
Q ss_pred CCeEecCCCCcHHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAIR 334 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~ 334 (591)
.++++|++|+|||+|++.+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5799999999999999998764
No 357
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=92.34 E-value=0.19 Score=49.04 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=20.3
Q ss_pred CCCCeEecCCCCcHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAI 333 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~ 333 (591)
..+++|+|++|+|||+|+..|..
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~ 44 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILR 44 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHhC
Confidence 45689999999999999999875
No 358
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=92.29 E-value=0.059 Score=47.89 Aligned_cols=23 Identities=30% Similarity=0.575 Sum_probs=20.1
Q ss_pred CCCeEecCCCCcHHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIR 334 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~ 334 (591)
.+++++|++|+|||+|++.+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999998764
No 359
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=92.29 E-value=0.56 Score=50.01 Aligned_cols=20 Identities=40% Similarity=0.431 Sum_probs=16.9
Q ss_pred cCCCCCeEecCCCCcHHHHH
Q 007723 309 RTKNNPILLGESGVGKTAIA 328 (591)
Q Consensus 309 ~~~~~ilL~GppGvGKT~la 328 (591)
....++++.||+|+|||...
T Consensus 129 ~~~~~~l~~a~TGsGKT~~~ 148 (479)
T 3fmp_B 129 EPPQNLIAQSQSGTGKTAAF 148 (479)
T ss_dssp BSCCEEEEECCSSSSHHHHH
T ss_pred CCCCcEEEEcCCCCchhHHH
Confidence 44578999999999999774
No 360
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.27 E-value=0.059 Score=48.06 Aligned_cols=22 Identities=36% Similarity=0.578 Sum_probs=19.5
Q ss_pred CCeEecCCCCcHHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAIR 334 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~ 334 (591)
+++++|++|+|||+|++.+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998754
No 361
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=92.25 E-value=0.56 Score=44.21 Aligned_cols=20 Identities=20% Similarity=0.117 Sum_probs=16.4
Q ss_pred CCCCeEecCCCCcHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEG 330 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~ 330 (591)
..++++.+|+|+|||.....
T Consensus 41 ~~~~lv~a~TGsGKT~~~~~ 60 (219)
T 1q0u_A 41 GESMVGQSQTGTGKTHAYLL 60 (219)
T ss_dssp TCCEEEECCSSHHHHHHHHH
T ss_pred CCCEEEECCCCChHHHHHHH
Confidence 36799999999999986443
No 362
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=92.22 E-value=0.95 Score=46.81 Aligned_cols=23 Identities=30% Similarity=0.291 Sum_probs=17.9
Q ss_pred CCCCeEecCCCCcHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAI 333 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~ 333 (591)
..++++.+|+|+|||......+.
T Consensus 74 ~~~~lv~a~TGsGKT~~~~~~~~ 96 (410)
T 2j0s_A 74 GRDVIAQSQSGTGKTATFSISVL 96 (410)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEECCCCCCchHHHHHHHH
Confidence 46799999999999976654443
No 363
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.17 E-value=0.068 Score=54.00 Aligned_cols=25 Identities=32% Similarity=0.400 Sum_probs=22.1
Q ss_pred CCeEecCCCCcHHHHHHHHHHHHHh
Q 007723 313 NPILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
-+.|+||+|+||||+++.|+..+..
T Consensus 102 vi~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4579999999999999999998753
No 364
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=92.16 E-value=0.068 Score=48.26 Aligned_cols=24 Identities=17% Similarity=0.295 Sum_probs=20.8
Q ss_pred CCCCCeEecCCCCcHHHHHHHHHH
Q 007723 310 TKNNPILLGESGVGKTAIAEGLAI 333 (591)
Q Consensus 310 ~~~~ilL~GppGvGKT~la~~lA~ 333 (591)
+...++|+|++|+|||+|++.+..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 346789999999999999999865
No 365
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=92.13 E-value=0.64 Score=47.61 Aligned_cols=20 Identities=25% Similarity=0.287 Sum_probs=16.2
Q ss_pred CCCCeEecCCCCcHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEG 330 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~ 330 (591)
..++++.+|+|+|||..+..
T Consensus 58 ~~~~lv~~~TGsGKT~~~~~ 77 (394)
T 1fuu_A 58 GHDVLAQAQSGTGKTGTFSI 77 (394)
T ss_dssp TCCEEECCCSSHHHHHHHHH
T ss_pred CCCEEEECCCCChHHHHHHH
Confidence 35799999999999987433
No 366
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.12 E-value=0.043 Score=50.58 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=22.1
Q ss_pred CCeEecCCCCcHHHHHHHHHHHHHh
Q 007723 313 NPILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
.+.|+|++|+|||||++.|+..+..
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 4679999999999999999998854
No 367
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=92.10 E-value=0.053 Score=50.84 Aligned_cols=28 Identities=18% Similarity=0.322 Sum_probs=21.0
Q ss_pred HhcCCCCCeEecCCCCcHHHHHHHHHHH
Q 007723 307 CRRTKNNPILLGESGVGKTAIAEGLAIR 334 (591)
Q Consensus 307 ~~~~~~~ilL~GppGvGKT~la~~lA~~ 334 (591)
.+...-.++|+|++|+|||+|++.+...
T Consensus 26 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 26 FQGQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp ----CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred hcCCeEEEEEECcCCCCHHHHHHHHHhC
Confidence 3444567899999999999999888753
No 368
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=92.09 E-value=0.063 Score=47.93 Aligned_cols=23 Identities=35% Similarity=0.482 Sum_probs=20.1
Q ss_pred CCCeEecCCCCcHHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIR 334 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~ 334 (591)
-+++++|++|+|||+|++.+...
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999998764
No 369
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=92.09 E-value=0.41 Score=56.14 Aligned_cols=42 Identities=19% Similarity=0.148 Sum_probs=29.1
Q ss_pred cHHHHHHHHHHHHhcCCCCCeEecCCCCcHHHHHHHHHHHHHh
Q 007723 295 RETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 295 ~~~~i~~l~~~L~~~~~~~ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
++...+.+..++. ....++||.++.|+|||..+-.++..+..
T Consensus 155 rpyQ~eav~~~l~-~~~~~~LLad~tGlGKTi~Ai~~i~~l~~ 196 (968)
T 3dmq_A 155 IPHQLNIAHDVGR-RHAPRVLLADEVGLGKTIEAGMILHQQLL 196 (968)
T ss_dssp CHHHHHHHHHHHH-SSSCEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH-hcCCCEEEECCCCCcHHHHHHHHHHHHHH
Confidence 3344444444444 34567899999999999999888877644
No 370
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=92.05 E-value=0.064 Score=48.41 Aligned_cols=23 Identities=35% Similarity=0.606 Sum_probs=20.0
Q ss_pred CCCeEecCCCCcHHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIR 334 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~ 334 (591)
.+++++|++|+|||+|++.+...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999998753
No 371
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=92.03 E-value=0.057 Score=52.40 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=21.0
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
+..+.|+||+|+|||||++.|+..+
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3456799999999999999988654
No 372
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=91.95 E-value=0.35 Score=51.48 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=20.2
Q ss_pred CCCeEecCCCCcHHHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~l 335 (591)
.+.++.+|.|+|||.++..++...
T Consensus 109 ~~~ll~~~TGsGKT~~~l~~i~~~ 132 (472)
T 2fwr_A 109 KRGCIVLPTGSGKTHVAMAAINEL 132 (472)
T ss_dssp TEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHc
Confidence 459999999999999987776654
No 373
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=91.94 E-value=0.068 Score=47.81 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=20.0
Q ss_pred CCCeEecCCCCcHHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIR 334 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~ 334 (591)
-.++++|++|+|||+|++.+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999998754
No 374
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=91.91 E-value=0.064 Score=47.91 Aligned_cols=21 Identities=33% Similarity=0.623 Sum_probs=19.1
Q ss_pred CCeEecCCCCcHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAI 333 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~ 333 (591)
.++++|++|+|||+|++.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 578999999999999999875
No 375
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=91.90 E-value=0.069 Score=47.51 Aligned_cols=22 Identities=32% Similarity=0.576 Sum_probs=19.6
Q ss_pred CCeEecCCCCcHHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAIR 334 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~ 334 (591)
.++++|++|+|||+|++.+...
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999998763
No 376
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=91.85 E-value=0.29 Score=50.09 Aligned_cols=27 Identities=19% Similarity=0.380 Sum_probs=22.8
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHHHh
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
...+.|+|+||+||||++..|+..+..
T Consensus 56 ~~~i~i~G~~g~GKSTl~~~l~~~~~~ 82 (341)
T 2p67_A 56 TLRLGVTGTPGAGKSTFLEAFGMLLIR 82 (341)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 345679999999999999999987753
No 377
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=91.84 E-value=0.072 Score=48.75 Aligned_cols=21 Identities=33% Similarity=0.495 Sum_probs=19.3
Q ss_pred CCeEecCCCCcHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAI 333 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~ 333 (591)
.++|+|++|+|||+|++.+..
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999999976
No 378
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.84 E-value=0.069 Score=52.05 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=20.8
Q ss_pred CCCeEecCCCCcHHHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~l 335 (591)
.-+.|+||+|+|||||++.|+..+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 456799999999999999998765
No 379
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.83 E-value=0.057 Score=51.99 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=20.9
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
+.-+.|+||+|+|||||++.|+..+
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3456799999999999999988654
No 380
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=91.81 E-value=0.2 Score=52.94 Aligned_cols=26 Identities=38% Similarity=0.383 Sum_probs=22.6
Q ss_pred CCCeEecCCCCcHHHHHHHHHHHHHh
Q 007723 312 NNPILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
..++|+|++|+||||++..||..+..
T Consensus 99 ~vi~i~G~~GsGKTT~~~~LA~~l~~ 124 (425)
T 2ffh_A 99 NLWFLVGLQGSGKTTTAAKLALYYKG 124 (425)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34678899999999999999998864
No 381
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=91.79 E-value=0.065 Score=47.79 Aligned_cols=20 Identities=45% Similarity=0.735 Sum_probs=18.2
Q ss_pred CCeEecCCCCcHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLA 332 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA 332 (591)
.++|+|++|+|||+|++.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 57899999999999999885
No 382
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=91.77 E-value=0.068 Score=47.74 Aligned_cols=21 Identities=24% Similarity=0.477 Sum_probs=19.1
Q ss_pred CCeEecCCCCcHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAI 333 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~ 333 (591)
.++++|++|+|||+|++.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 578999999999999999875
No 383
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=91.77 E-value=0.073 Score=47.43 Aligned_cols=23 Identities=35% Similarity=0.484 Sum_probs=19.9
Q ss_pred CCCeEecCCCCcHHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIR 334 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~ 334 (591)
-.++|+|++|+|||+|++.+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999998753
No 384
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=91.77 E-value=0.075 Score=47.53 Aligned_cols=20 Identities=45% Similarity=0.790 Sum_probs=18.3
Q ss_pred CCeEecCCCCcHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLA 332 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA 332 (591)
.++|+|++|+|||+|++.+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999985
No 385
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=91.77 E-value=0.072 Score=48.16 Aligned_cols=24 Identities=38% Similarity=0.530 Sum_probs=20.6
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIR 334 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~ 334 (591)
...++++|++|+|||+|++.+...
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999988764
No 386
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=91.77 E-value=0.072 Score=48.69 Aligned_cols=23 Identities=35% Similarity=0.417 Sum_probs=20.1
Q ss_pred CCCeEecCCCCcHHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIR 334 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~ 334 (591)
-.++|+|++|+|||+|++.+...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999998763
No 387
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=91.75 E-value=2.1 Score=41.16 Aligned_cols=20 Identities=25% Similarity=0.233 Sum_probs=16.3
Q ss_pred CCCCeEecCCCCcHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEG 330 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~ 330 (591)
..++++.+|+|+|||.....
T Consensus 60 ~~~~l~~a~TGsGKT~~~~~ 79 (253)
T 1wrb_A 60 HRDIMACAQTGSGKTAAFLI 79 (253)
T ss_dssp TCCEEEECCTTSSHHHHHHH
T ss_pred CCCEEEECCCCChHHHHHHH
Confidence 36799999999999986443
No 388
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=91.64 E-value=0.23 Score=56.84 Aligned_cols=23 Identities=22% Similarity=0.173 Sum_probs=20.3
Q ss_pred CCeEecCCCCcHHHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l 335 (591)
-++|+||.|+||||+.+.++...
T Consensus 609 i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 609 MLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHHHHH
Confidence 46799999999999999998764
No 389
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=91.57 E-value=0.069 Score=51.89 Aligned_cols=25 Identities=20% Similarity=0.403 Sum_probs=21.5
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
+.-+.|+||+|+|||||++.|+..+
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3456799999999999999998765
No 390
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=91.56 E-value=0.86 Score=49.18 Aligned_cols=26 Identities=35% Similarity=0.321 Sum_probs=19.3
Q ss_pred CCCCCeEecCCCCcHHHHHHH-HHHHH
Q 007723 310 TKNNPILLGESGVGKTAIAEG-LAIRI 335 (591)
Q Consensus 310 ~~~~ilL~GppGvGKT~la~~-lA~~l 335 (591)
...++++++|.|+|||..+.. +...+
T Consensus 157 ~~~~~ll~apTGsGKT~~~~~~il~~l 183 (508)
T 3fho_A 157 PPRNMIGQSQSGTGKTAAFALTMLSRV 183 (508)
T ss_dssp SCCCEEEECCSSTTSHHHHHHHHHHHS
T ss_pred CCCCEEEECCCCccHHHHHHHHHHHHH
Confidence 357899999999999987443 34333
No 391
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=91.54 E-value=0.079 Score=47.41 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=20.0
Q ss_pred CCCCeEecCCCCcHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAI 333 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~ 333 (591)
...++++|++|+|||+|++.+..
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999865
No 392
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=91.54 E-value=0.15 Score=56.95 Aligned_cols=39 Identities=15% Similarity=0.389 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhcCCCCCeEecCCCCcHHHHHHHHHHHHHh
Q 007723 296 ETEIQRIIQILCRRTKNNPILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 296 ~~~i~~l~~~L~~~~~~~ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
+.....+..++. .+..++.||||||||+++..+...+..
T Consensus 183 ~~Q~~av~~~l~---~~~~li~GppGTGKT~~~~~~i~~l~~ 221 (624)
T 2gk6_A 183 HSQVYAVKTVLQ---RPLSLIQGPPGTGKTVTSATIVYHLAR 221 (624)
T ss_dssp HHHHHHHHHHHT---CSEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc---CCCeEEECCCCCCHHHHHHHHHHHHHH
Confidence 334444444443 345789999999999998888777653
No 393
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.52 E-value=0.079 Score=50.70 Aligned_cols=25 Identities=24% Similarity=0.422 Sum_probs=21.1
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
+.-+.|+||.|+|||||++.|+..+
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4456799999999999999998654
No 394
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=91.49 E-value=0.098 Score=54.28 Aligned_cols=32 Identities=6% Similarity=0.020 Sum_probs=25.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCC-CcCCHHHHHHHhhhc
Q 007723 169 MPFSISTKRVFEAAVEYSRSRGY-NFIAPEHIALGLFTV 206 (591)
Q Consensus 169 ~~~S~~~k~vL~~A~~~A~~~g~-~~I~~ehLLlall~~ 206 (591)
-.+||.-.+-|+.+. +. +.|+--.|.+-++..
T Consensus 64 ~~l~p~q~~~l~~~~------~~~~v~dr~~lil~i~~~ 96 (364)
T 2qtf_A 64 EQLKPRHFINIRREL------KGKEVLDKILLLLEIFAL 96 (364)
T ss_dssp SCCCHHHHHHHHHHH------TTCEEECHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHh------CCCceeehHhHHHHHHHh
Confidence 367888888888774 66 788888999988853
No 395
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=91.47 E-value=0.92 Score=49.35 Aligned_cols=21 Identities=24% Similarity=0.192 Sum_probs=16.9
Q ss_pred CCCCCeEecCCCCcHHHHHHH
Q 007723 310 TKNNPILLGESGVGKTAIAEG 330 (591)
Q Consensus 310 ~~~~ilL~GppGvGKT~la~~ 330 (591)
...++++.+|+|+|||.....
T Consensus 110 ~~~~~lv~apTGsGKTl~~~l 130 (563)
T 3i5x_A 110 EDHDVIARAKTGTGKTFAFLI 130 (563)
T ss_dssp SSEEEEEECCTTSCHHHHHHH
T ss_pred CCCeEEEECCCCCCccHHHHH
Confidence 456899999999999975443
No 396
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=91.47 E-value=0.44 Score=54.46 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=18.8
Q ss_pred CCCCeEecCCCCcHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAI 333 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~ 333 (591)
..+++++||+|+|||+++..+..
T Consensus 109 ~~~vii~gpTGSGKTtllp~ll~ 131 (773)
T 2xau_A 109 NQIMVFVGETGSGKTTQIPQFVL 131 (773)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999997766643
No 397
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=91.46 E-value=0.11 Score=50.49 Aligned_cols=28 Identities=18% Similarity=0.234 Sum_probs=23.5
Q ss_pred CCCeEecCCCCcHHHHHHHHHHHHHhCC
Q 007723 312 NNPILLGESGVGKTAIAEGLAIRIVQAE 339 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~l~~~~ 339 (591)
.-++|.|++|+||||+++.|+..+....
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l~~~~ 55 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETLQQNG 55 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 3467889999999999999999986543
No 398
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=91.45 E-value=0.081 Score=48.53 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=20.3
Q ss_pred CCCeEecCCCCcHHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIR 334 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~ 334 (591)
-.++++|++|+|||+|+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
No 399
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=91.44 E-value=0.076 Score=47.96 Aligned_cols=23 Identities=26% Similarity=0.510 Sum_probs=20.4
Q ss_pred CCCeEecCCCCcHHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIR 334 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~ 334 (591)
..++|+|++|+|||+|++.+...
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999998765
No 400
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=91.41 E-value=0.1 Score=49.23 Aligned_cols=23 Identities=26% Similarity=0.159 Sum_probs=21.2
Q ss_pred CCeEecCCCCcHHHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l 335 (591)
-|.|.|++|+|||++++.||+.+
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~l 30 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHY 30 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHT
T ss_pred EEEEeCCCCCCHHHHHHHHHHHh
Confidence 46788999999999999999988
No 401
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=91.40 E-value=0.074 Score=48.03 Aligned_cols=22 Identities=32% Similarity=0.548 Sum_probs=19.4
Q ss_pred CCCeEecCCCCcHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAI 333 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~ 333 (591)
..++|+|++|+|||+|++.+..
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999998864
No 402
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=91.40 E-value=0.082 Score=48.16 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=20.1
Q ss_pred CCCeEecCCCCcHHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIR 334 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~ 334 (591)
-.++|+|++|+|||+|++.+...
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999754
No 403
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=91.40 E-value=0.08 Score=48.18 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=20.1
Q ss_pred CCCeEecCCCCcHHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIR 334 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~ 334 (591)
..++|+|++|+|||+|++.+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999999753
No 404
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=91.40 E-value=0.085 Score=63.99 Aligned_cols=27 Identities=30% Similarity=0.354 Sum_probs=22.6
Q ss_pred cCCCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 309 RTKNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 309 ~~~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
+.+..+.|+||+|+|||||++.|.+.+
T Consensus 442 ~~G~~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 442 NAGQTVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp CTTCEEEEEECSSSCHHHHHHHHTTSS
T ss_pred cCCcEEEEEecCCCcHHHHHHHhcccc
Confidence 345567899999999999999998764
No 405
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=91.39 E-value=0.084 Score=47.55 Aligned_cols=23 Identities=26% Similarity=0.544 Sum_probs=20.3
Q ss_pred CCCeEecCCCCcHHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIR 334 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~ 334 (591)
..++|+|++|+|||+|++.+...
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999998764
No 406
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=91.38 E-value=0.069 Score=55.34 Aligned_cols=27 Identities=30% Similarity=0.500 Sum_probs=23.7
Q ss_pred cCCCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 309 RTKNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 309 ~~~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
..+..++|+||+|+||||+++.|+..+
T Consensus 173 ~~G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp HTTCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 456688999999999999999998865
No 407
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=91.36 E-value=0.084 Score=48.63 Aligned_cols=23 Identities=39% Similarity=0.602 Sum_probs=20.1
Q ss_pred CCCeEecCCCCcHHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIR 334 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~ 334 (591)
..++|+|++|+|||+|++.+...
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 35899999999999999988764
No 408
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=91.33 E-value=0.08 Score=47.71 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=19.6
Q ss_pred CCCeEecCCCCcHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAI 333 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~ 333 (591)
-.++|+|++|+|||+|++.+..
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3589999999999999999875
No 409
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=91.32 E-value=0.081 Score=47.77 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=19.9
Q ss_pred CCCeEecCCCCcHHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIR 334 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~ 334 (591)
-.++|+|++|+|||+|++.+...
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 35789999999999999998753
No 410
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=91.32 E-value=0.74 Score=48.15 Aligned_cols=24 Identities=33% Similarity=0.351 Sum_probs=20.9
Q ss_pred CCeEecCCCCcHHHHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAIRIV 336 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l~ 336 (591)
++++.+|+|+|||..+-.++....
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~ 48 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRL 48 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 899999999999999888876653
No 411
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=91.28 E-value=0.076 Score=52.45 Aligned_cols=25 Identities=20% Similarity=0.314 Sum_probs=21.0
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
+.-+.|+||+|+|||||++.|+..+
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3446799999999999999998754
No 412
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=91.27 E-value=0.088 Score=48.20 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.1
Q ss_pred CCCeEecCCCCcHHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIR 334 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~ 334 (591)
-.++|+|++|+|||+|++.+...
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35789999999999999998764
No 413
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=91.26 E-value=0.088 Score=47.81 Aligned_cols=23 Identities=30% Similarity=0.575 Sum_probs=20.2
Q ss_pred CCCeEecCCCCcHHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIR 334 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~ 334 (591)
..++|+|++|+|||+|++.+...
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 46899999999999999998763
No 414
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=91.25 E-value=0.078 Score=54.84 Aligned_cols=25 Identities=32% Similarity=0.343 Sum_probs=21.4
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
+.-+.|+||+|+|||||++.|+..+
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCC
Confidence 3446799999999999999999864
No 415
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=91.21 E-value=0.098 Score=54.16 Aligned_cols=25 Identities=32% Similarity=0.400 Sum_probs=22.1
Q ss_pred CCeEecCCCCcHHHHHHHHHHHHHh
Q 007723 313 NPILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
-+.|+||+|+||||+++.|+..+..
T Consensus 159 vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHHHHhhccc
Confidence 4679999999999999999998753
No 416
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=91.17 E-value=0.076 Score=51.30 Aligned_cols=26 Identities=23% Similarity=0.238 Sum_probs=19.6
Q ss_pred CCCeEecCCCCcHHHHHHHHHHHHHh
Q 007723 312 NNPILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
.-|+|.|++|+||||+++.|++.+..
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~~~l~~ 51 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFCDRLQE 51 (227)
T ss_dssp CEEEEECCC---CHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 34678899999999999999999854
No 417
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.17 E-value=0.091 Score=47.51 Aligned_cols=23 Identities=35% Similarity=0.494 Sum_probs=19.9
Q ss_pred CCCeEecCCCCcHHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIR 334 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~ 334 (591)
-+++|+|++|+|||+|++.+...
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 36899999999999999998653
No 418
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=91.17 E-value=0.17 Score=52.77 Aligned_cols=39 Identities=31% Similarity=0.422 Sum_probs=29.9
Q ss_pred cCCCCCeEecCCCCcHHHHHHHHHHHHHhCCCCccccCceEEEeeh
Q 007723 309 RTKNNPILLGESGVGKTAIAEGLAIRIVQAEVPVFLLSKRIMSLDM 354 (591)
Q Consensus 309 ~~~~~ilL~GppGvGKT~la~~lA~~l~~~~~p~~~~~~~~~~ld~ 354 (591)
....|++++|++|+|||++++.++..+.. .+..++.+|.
T Consensus 33 ~~~~~~~i~G~~G~GKs~~~~~~~~~~~~-------~~~~~~~~D~ 71 (392)
T 4ag6_A 33 RTNSNWTILAKPGAGKSFTAKMLLLREYM-------QGSRVIIIDP 71 (392)
T ss_dssp BCCCCEEEECCTTSSHHHHHHHHHHHHHT-------TTCCEEEEES
T ss_pred cccCceEEEcCCCCCHHHHHHHHHHHHHH-------CCCEEEEEeC
Confidence 35678999999999999999999887643 2445565663
No 419
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=91.16 E-value=0.091 Score=47.79 Aligned_cols=23 Identities=26% Similarity=0.543 Sum_probs=20.1
Q ss_pred CCCeEecCCCCcHHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIR 334 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~ 334 (591)
-.++|+|++|+|||+|++.+...
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35799999999999999998854
No 420
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.14 E-value=0.094 Score=52.98 Aligned_cols=24 Identities=25% Similarity=0.245 Sum_probs=21.1
Q ss_pred CCeEecCCCCcHHHHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAIRIV 336 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l~ 336 (591)
-+.|+||+|+||||+++.|+..+.
T Consensus 82 iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 82 IISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 356999999999999999998773
No 421
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=91.13 E-value=0.079 Score=52.11 Aligned_cols=25 Identities=16% Similarity=0.401 Sum_probs=21.2
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
+.-+.|+||+|+|||||++.|+..+
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4456799999999999999998754
No 422
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=91.11 E-value=0.078 Score=48.44 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=19.4
Q ss_pred CCeEecCCCCcHHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAIR 334 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~ 334 (591)
.++++|++|+|||+|++.+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5789999999999999998753
No 423
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=91.08 E-value=0.096 Score=51.29 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=20.7
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIR 334 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~ 334 (591)
+.-+.|+||+|+|||||++.|+..
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 345679999999999999999974
No 424
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=91.06 E-value=0.094 Score=47.46 Aligned_cols=23 Identities=26% Similarity=0.515 Sum_probs=20.0
Q ss_pred CCCeEecCCCCcHHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIR 334 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~ 334 (591)
..++|+|++|+|||+|++.+...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45899999999999999998753
No 425
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=91.05 E-value=0.12 Score=59.91 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=19.1
Q ss_pred CCeEecCCCCcHHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAIR 334 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~ 334 (591)
-++|+||.|+||||+.+.++..
T Consensus 675 i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 675 VMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp EEEEESCCCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCchHHHHHHHHHH
Confidence 3579999999999999998754
No 426
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=91.02 E-value=0.088 Score=47.95 Aligned_cols=23 Identities=17% Similarity=0.443 Sum_probs=20.1
Q ss_pred CCCeEecCCCCcHHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIR 334 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~ 334 (591)
..++|+|++|+|||+|++.+...
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999998753
No 427
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=91.02 E-value=0.092 Score=48.55 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=20.0
Q ss_pred CCCCeEecCCCCcHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAI 333 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~ 333 (591)
...++++|++|+|||+|++.+..
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 45789999999999999999875
No 428
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=91.00 E-value=0.17 Score=49.25 Aligned_cols=24 Identities=21% Similarity=0.409 Sum_probs=21.3
Q ss_pred CCeEecCCCCcHHHHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAIRIV 336 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l~ 336 (591)
.+++.|.+|+||||++..++..+.
T Consensus 16 i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 16 IVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHH
Confidence 357889999999999999998875
No 429
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.00 E-value=0.091 Score=48.63 Aligned_cols=25 Identities=24% Similarity=0.492 Sum_probs=21.4
Q ss_pred CCCCCeEecCCCCcHHHHHHHHHHH
Q 007723 310 TKNNPILLGESGVGKTAIAEGLAIR 334 (591)
Q Consensus 310 ~~~~ilL~GppGvGKT~la~~lA~~ 334 (591)
..-.++|+|++|+|||+|++.+...
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3457899999999999999998764
No 430
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=90.99 E-value=0.099 Score=51.77 Aligned_cols=25 Identities=28% Similarity=0.472 Sum_probs=21.1
Q ss_pred CCCCCeEecCCCCcHHHHHHHHHHH
Q 007723 310 TKNNPILLGESGVGKTAIAEGLAIR 334 (591)
Q Consensus 310 ~~~~ilL~GppGvGKT~la~~lA~~ 334 (591)
.+.-+.|+||+|+|||||++.|+..
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3445679999999999999999874
No 431
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=90.96 E-value=0.096 Score=54.21 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=22.0
Q ss_pred CCCeEecCCCCcHHHHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIRIV 336 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~l~ 336 (591)
..+.|+||+|+|||||++.|+..+.
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 3578999999999999999998763
No 432
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=90.96 E-value=0.11 Score=46.98 Aligned_cols=24 Identities=21% Similarity=0.272 Sum_probs=20.6
Q ss_pred CCCCCeEecCCCCcHHHHHHHHHH
Q 007723 310 TKNNPILLGESGVGKTAIAEGLAI 333 (591)
Q Consensus 310 ~~~~ilL~GppGvGKT~la~~lA~ 333 (591)
..-.++++|++|+|||+|++.+..
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHhc
Confidence 345789999999999999988875
No 433
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=90.95 E-value=0.081 Score=52.70 Aligned_cols=25 Identities=24% Similarity=0.434 Sum_probs=21.1
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
+.-+.|+||+|+|||||++.|+..+
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC
Confidence 3456799999999999999998754
No 434
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.93 E-value=0.086 Score=51.30 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=21.0
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
+.-+.|+||+|+|||||++.|+..+
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3456799999999999999998654
No 435
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=90.93 E-value=0.11 Score=47.90 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=19.6
Q ss_pred CCCeEecCCCCcHHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIR 334 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~ 334 (591)
-.++|+|++|+|||+|++.+...
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35799999999999999887653
No 436
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=90.92 E-value=0.11 Score=47.84 Aligned_cols=23 Identities=43% Similarity=0.605 Sum_probs=20.3
Q ss_pred CCCeEecCCCCcHHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIR 334 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~ 334 (591)
-.++|+|++|+|||+|++.+...
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45799999999999999998764
No 437
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=90.91 E-value=0.099 Score=47.46 Aligned_cols=22 Identities=23% Similarity=0.462 Sum_probs=19.4
Q ss_pred CCeEecCCCCcHHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAIR 334 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~ 334 (591)
.++|+|++|+|||+|++.+...
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5799999999999999988753
No 438
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=90.89 E-value=0.083 Score=51.49 Aligned_cols=25 Identities=28% Similarity=0.202 Sum_probs=21.3
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
+..+.|+||+|+|||||++.|+..+
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3456799999999999999998764
No 439
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=90.89 E-value=0.087 Score=51.54 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=21.2
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
+.-+.|+||+|+|||||++.|+..+
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4457799999999999999998754
No 440
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=90.87 E-value=0.087 Score=50.85 Aligned_cols=26 Identities=19% Similarity=0.248 Sum_probs=21.8
Q ss_pred CCCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 310 TKNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 310 ~~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
.+..+.|+||.|+|||||++.|+..+
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34457799999999999999998765
No 441
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=90.86 E-value=0.094 Score=50.70 Aligned_cols=24 Identities=21% Similarity=0.216 Sum_probs=21.5
Q ss_pred CCeEecCCCCcHHHHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAIRIV 336 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l~ 336 (591)
.++|.|++|+||||+++.|++.+.
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHCT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 467899999999999999999873
No 442
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=90.86 E-value=0.099 Score=48.48 Aligned_cols=23 Identities=30% Similarity=0.575 Sum_probs=20.1
Q ss_pred CCCeEecCCCCcHHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIR 334 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~ 334 (591)
..++|+|++|+|||+|++.+...
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999998754
No 443
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=90.85 E-value=0.088 Score=52.04 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=21.1
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
+.-+.|+||+|+|||||++.|+..+
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 4456799999999999999998754
No 444
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=90.85 E-value=0.1 Score=47.96 Aligned_cols=22 Identities=36% Similarity=0.428 Sum_probs=19.6
Q ss_pred CCeEecCCCCcHHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAIR 334 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~ 334 (591)
.++|+|++|+|||+|++.+...
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999998754
No 445
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=90.83 E-value=0.1 Score=47.86 Aligned_cols=24 Identities=17% Similarity=0.141 Sum_probs=20.0
Q ss_pred CCCeEecCCCCcHHHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~l 335 (591)
-.++|+|++|+|||+|++.+....
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 458999999999999998776543
No 446
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=90.82 E-value=0.11 Score=48.21 Aligned_cols=21 Identities=43% Similarity=0.670 Sum_probs=19.0
Q ss_pred CCeEecCCCCcHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAI 333 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~ 333 (591)
.++|+|+||||||+|++.+..
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999875
No 447
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=90.80 E-value=0.098 Score=54.05 Aligned_cols=25 Identities=40% Similarity=0.278 Sum_probs=21.5
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
+.-+.|+||+|+|||||.+.|+..+
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4456799999999999999999764
No 448
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=90.80 E-value=0.12 Score=49.99 Aligned_cols=22 Identities=36% Similarity=0.490 Sum_probs=20.2
Q ss_pred CeEecCCCCcHHHHHHHHHHHH
Q 007723 314 PILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 314 ilL~GppGvGKT~la~~lA~~l 335 (591)
+-|.|+||+||||+++.|+..+
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred eeeECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999987
No 449
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=90.78 E-value=0.6 Score=44.05 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=19.9
Q ss_pred CCeEecCCCCcHHHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l 335 (591)
-++|+|.||+||++++..+...+
T Consensus 13 II~itGk~~SGKd~va~~l~~~~ 35 (202)
T 3ch4_B 13 VLLFSGKRKSGKDFVTEALQSRL 35 (202)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHHHHc
Confidence 35788999999999999998765
No 450
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=90.77 E-value=0.098 Score=54.54 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=21.4
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
+.-+.|+||+|+|||||++.|+..+
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHHcCC
Confidence 3446799999999999999999865
No 451
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=90.76 E-value=0.18 Score=53.45 Aligned_cols=22 Identities=27% Similarity=0.288 Sum_probs=17.6
Q ss_pred CCCCeEecCCCCcHHHHH-HHHH
Q 007723 311 KNNPILLGESGVGKTAIA-EGLA 332 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la-~~lA 332 (591)
..++++.||+|+|||..+ ..+.
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l 24 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLV 24 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 467899999999999976 4444
No 452
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=90.74 E-value=0.084 Score=47.78 Aligned_cols=22 Identities=18% Similarity=0.315 Sum_probs=19.6
Q ss_pred CCeEecCCCCcHHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAIR 334 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~ 334 (591)
.++|+|++|+|||+|++.+...
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5799999999999999998764
No 453
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=90.74 E-value=0.091 Score=51.50 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=21.0
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
+..+.|+||+|+|||||++.|+..+
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4456799999999999999988654
No 454
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=90.73 E-value=0.091 Score=52.03 Aligned_cols=26 Identities=19% Similarity=0.340 Sum_probs=21.6
Q ss_pred CCCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 310 TKNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 310 ~~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
.+.-+.|+||+|+|||||++.|+..+
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34456799999999999999998754
No 455
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=90.72 E-value=0.11 Score=47.73 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=20.0
Q ss_pred CCCeEecCCCCcHHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIR 334 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~ 334 (591)
-.++|+|++|+|||+|++.+...
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHhC
Confidence 35899999999999999988764
No 456
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=90.71 E-value=0.086 Score=57.29 Aligned_cols=26 Identities=31% Similarity=0.484 Sum_probs=23.0
Q ss_pred CCCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 310 TKNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 310 ~~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
.+.+++|+||+|+||||+++++...+
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45579999999999999999998876
No 457
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=90.70 E-value=0.094 Score=51.72 Aligned_cols=26 Identities=31% Similarity=0.360 Sum_probs=21.6
Q ss_pred CCCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 310 TKNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 310 ~~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
.+..+.|+||+|+|||||++.|+..+
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 34457899999999999999998654
No 458
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=90.68 E-value=1.2 Score=47.49 Aligned_cols=28 Identities=18% Similarity=0.095 Sum_probs=22.8
Q ss_pred CCCCCeEecCCCCcHHHHHHHHHHHHHh
Q 007723 310 TKNNPILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 310 ~~~~ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
...+.+|.-+.|+|||..+-+++..+..
T Consensus 55 ~~~~~ilad~~GlGKT~~ai~~i~~~~~ 82 (500)
T 1z63_A 55 LGFGICLADDMGLGKTLQTIAVFSDAKK 82 (500)
T ss_dssp TTCCEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHHHh
Confidence 3467899999999999998888777643
No 459
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=90.67 E-value=0.65 Score=50.43 Aligned_cols=28 Identities=18% Similarity=0.275 Sum_probs=23.4
Q ss_pred CCCCCeEecCCCCcHHHHHHHHHHHHHh
Q 007723 310 TKNNPILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 310 ~~~~ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
.+..++|+||+|+|||||++.++.....
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~~ 307 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENACA 307 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHHT
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 4455789999999999999999987653
No 460
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=90.67 E-value=0.094 Score=52.05 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=21.6
Q ss_pred CCCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 310 TKNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 310 ~~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
.+..+.|+||+|+|||||++.|+..+
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34456799999999999999998754
No 461
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=90.63 E-value=0.38 Score=49.85 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=20.0
Q ss_pred CCeEecCCCCcHHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAIR 334 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~ 334 (591)
.+.|+|+||+|||||.+.|...
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999876
No 462
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=90.61 E-value=0.094 Score=47.89 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=20.9
Q ss_pred cCCCCCeEecCCCCcHHHHHHHHHH
Q 007723 309 RTKNNPILLGESGVGKTAIAEGLAI 333 (591)
Q Consensus 309 ~~~~~ilL~GppGvGKT~la~~lA~ 333 (591)
.....++++|++|+|||+|++.+..
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhc
Confidence 4456789999999999999998865
No 463
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=90.60 E-value=0.11 Score=47.86 Aligned_cols=22 Identities=27% Similarity=0.594 Sum_probs=19.5
Q ss_pred CCeEecCCCCcHHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAIR 334 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~ 334 (591)
.++|+|++|+|||+|++.+...
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999998753
No 464
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=90.58 E-value=0.11 Score=47.75 Aligned_cols=23 Identities=35% Similarity=0.528 Sum_probs=20.0
Q ss_pred CCCeEecCCCCcHHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIR 334 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~ 334 (591)
-.++|+|++|+|||+|++.+...
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999998753
No 465
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=90.56 E-value=0.1 Score=47.31 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=19.7
Q ss_pred CCCeEecCCCCcHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAI 333 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~ 333 (591)
..++|+|++|+|||+|++.+..
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 4689999999999999999874
No 466
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=90.56 E-value=0.46 Score=51.28 Aligned_cols=26 Identities=12% Similarity=0.092 Sum_probs=22.4
Q ss_pred CCCeEecCCCCcHHHHHHHHHHHHHh
Q 007723 312 NNPILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
.-++|.|+||+|||+++..++..+..
T Consensus 243 ~l~li~G~pG~GKT~lal~~a~~~a~ 268 (503)
T 1q57_A 243 EVIMVTSGSGMVMSTFVRQQALQWGT 268 (503)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHHHTT
T ss_pred eEEEEeecCCCCchHHHHHHHHHHHH
Confidence 44678899999999999999988754
No 467
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=90.55 E-value=0.1 Score=47.83 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=19.8
Q ss_pred CCCCeEecCCCCcHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAI 333 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~ 333 (591)
...++|+|++|+|||+|++.+..
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999998764
No 468
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=90.55 E-value=0.11 Score=47.89 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=20.3
Q ss_pred CCCeEecCCCCcHHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIR 334 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~ 334 (591)
-.++|+|++|+|||+|++.+...
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999998764
No 469
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=90.55 E-value=0.11 Score=47.68 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=20.0
Q ss_pred CCCeEecCCCCcHHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIR 334 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~ 334 (591)
..++|+|++|+|||+|++.+...
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999998753
No 470
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=90.53 E-value=0.1 Score=48.20 Aligned_cols=24 Identities=29% Similarity=0.497 Sum_probs=21.1
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIR 334 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~ 334 (591)
...++|.|++|+||||++..+.++
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 457899999999999999998873
No 471
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=90.53 E-value=0.36 Score=48.58 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=18.9
Q ss_pred CCeEecCCCCcHHHHHHHHHHH
Q 007723 313 NPILLGESGVGKTAIAEGLAIR 334 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~ 334 (591)
-+.|+|.||+|||||++.|...
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4679999999999999988653
No 472
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=90.49 E-value=0.11 Score=47.54 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=20.2
Q ss_pred CCCeEecCCCCcHHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIR 334 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~ 334 (591)
-.++|+|++|+|||+|++.+...
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999998764
No 473
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=90.48 E-value=0.11 Score=53.72 Aligned_cols=25 Identities=32% Similarity=0.304 Sum_probs=21.3
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
+.-+.|+||+|+|||||.+.|+..+
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCC
Confidence 3446799999999999999999764
No 474
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=90.45 E-value=0.56 Score=48.86 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=18.2
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIR 334 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~ 334 (591)
..++++++|+|+|||......+..
T Consensus 36 ~~~~lv~apTGsGKT~~~l~~~~~ 59 (414)
T 3oiy_A 36 GKSFTMVAPTGVGKTTFGMMTALW 59 (414)
T ss_dssp TCCEECCSCSSSSHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHH
Confidence 458999999999999955444433
No 475
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=90.44 E-value=0.11 Score=48.06 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=20.2
Q ss_pred CCCeEecCCCCcHHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIR 334 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~ 334 (591)
-.++|+|++|+|||+|++.+...
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999998764
No 476
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=90.44 E-value=0.099 Score=52.15 Aligned_cols=26 Identities=31% Similarity=0.331 Sum_probs=21.5
Q ss_pred CCCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 310 TKNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 310 ~~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
.+.-+.|+||+|+|||||++.|+..+
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34456799999999999999998754
No 477
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=90.44 E-value=0.12 Score=53.58 Aligned_cols=25 Identities=40% Similarity=0.276 Sum_probs=21.3
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
+.-+.|+||+|+|||||.+.|+..+
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHHCCC
Confidence 3446799999999999999999764
No 478
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.44 E-value=0.11 Score=47.93 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=20.8
Q ss_pred CCCeEecCCCCcHHHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~l 335 (591)
-.++|+|++|+|||+|++.+...-
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 358999999999999999987653
No 479
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.42 E-value=0.1 Score=51.36 Aligned_cols=25 Identities=28% Similarity=0.286 Sum_probs=21.1
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
+.-+.|+||.|+|||||++.|+..+
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3456799999999999999998654
No 480
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=90.42 E-value=0.17 Score=53.44 Aligned_cols=25 Identities=28% Similarity=0.251 Sum_probs=21.3
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
...+.|+||+|+|||||++.|+..+
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCC
Confidence 3467799999999999999998754
No 481
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=90.41 E-value=0.11 Score=48.16 Aligned_cols=23 Identities=39% Similarity=0.634 Sum_probs=20.2
Q ss_pred CCCeEecCCCCcHHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIR 334 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~ 334 (591)
..++|+|++|+|||+|++.+...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999998764
No 482
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=90.41 E-value=0.12 Score=48.09 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=20.8
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIR 334 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~ 334 (591)
...++|+|++|+|||+|++.+...
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 456899999999999999998753
No 483
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=90.40 E-value=0.11 Score=48.26 Aligned_cols=22 Identities=32% Similarity=0.364 Sum_probs=19.3
Q ss_pred CCCeEecCCCCcHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAI 333 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~ 333 (591)
..++|+|++|+|||+|++.+..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~ 30 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYAD 30 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3589999999999999998865
No 484
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=90.39 E-value=1.3 Score=48.49 Aligned_cols=21 Identities=24% Similarity=0.192 Sum_probs=16.9
Q ss_pred CCCCCeEecCCCCcHHHHHHH
Q 007723 310 TKNNPILLGESGVGKTAIAEG 330 (591)
Q Consensus 310 ~~~~ilL~GppGvGKT~la~~ 330 (591)
...++++.+|+|+|||.....
T Consensus 59 ~~~dvlv~apTGsGKTl~~~l 79 (579)
T 3sqw_A 59 EDHDVIARAKTGTGKTFAFLI 79 (579)
T ss_dssp SSEEEEEECCTTSCHHHHHHH
T ss_pred CCCeEEEEcCCCcHHHHHHHH
Confidence 456899999999999985443
No 485
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=90.37 E-value=0.11 Score=63.03 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=22.1
Q ss_pred CCCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 310 TKNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 310 ~~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
.+..+-|+|++|+|||||++.|.+.+
T Consensus 1104 ~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1104 PGQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp TTCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCc
Confidence 34567899999999999999998764
No 486
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=90.31 E-value=0.16 Score=45.47 Aligned_cols=23 Identities=17% Similarity=0.651 Sum_probs=20.5
Q ss_pred CeEecCCCCcHHHHHHHHHHHHH
Q 007723 314 PILLGESGVGKTAIAEGLAIRIV 336 (591)
Q Consensus 314 ilL~GppGvGKT~la~~lA~~l~ 336 (591)
.+|+||.|+|||++..+|.-.+.
T Consensus 26 ~~I~G~NGsGKStil~Ai~~~l~ 48 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAILVGLY 48 (149)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 47999999999999999988764
No 487
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=90.28 E-value=0.12 Score=53.72 Aligned_cols=25 Identities=36% Similarity=0.324 Sum_probs=21.4
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
+.-+.|+||+|+|||||.+.|+..+
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Confidence 3456799999999999999999764
No 488
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=90.27 E-value=0.22 Score=51.26 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=21.8
Q ss_pred CCCeEecCCCCcHHHHHHHHHHHHHh
Q 007723 312 NNPILLGESGVGKTAIAEGLAIRIVQ 337 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~l~~ 337 (591)
..+.|+|+||+|||||.+.|...+..
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~~~~ 100 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKMLTE 100 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhhh
Confidence 34679999999999999999987643
No 489
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=90.26 E-value=0.099 Score=48.66 Aligned_cols=21 Identities=43% Similarity=0.703 Sum_probs=18.6
Q ss_pred CCCeEecCCCCcHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLA 332 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA 332 (591)
..++|+|++|||||+|++.+.
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTC
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 357999999999999999884
No 490
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=90.25 E-value=0.11 Score=51.44 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=21.0
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
+.-+.|+||.|+|||||++.|+..+
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3456799999999999999998754
No 491
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=90.22 E-value=0.11 Score=48.33 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=20.0
Q ss_pred CCCeEecCCCCcHHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIR 334 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~ 334 (591)
..++|+|++|+|||+|++.+...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999998753
No 492
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=90.20 E-value=0.11 Score=48.22 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=20.8
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIR 334 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~ 334 (591)
...++|+|++|+|||+|++.+...
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEEECCCCcCHHHHHHHHHhC
Confidence 346899999999999999998864
No 493
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=90.19 E-value=0.16 Score=48.43 Aligned_cols=27 Identities=22% Similarity=0.243 Sum_probs=23.2
Q ss_pred CCeEecCCCCcHHHHHHHHHHHHHhCC
Q 007723 313 NPILLGESGVGKTAIAEGLAIRIVQAE 339 (591)
Q Consensus 313 ~ilL~GppGvGKT~la~~lA~~l~~~~ 339 (591)
-|+|.|++|+||||+++.|++.+....
T Consensus 5 ~i~~eG~~gsGKsT~~~~l~~~l~~~~ 31 (213)
T 4tmk_A 5 YIVIEGLEGAGKTTARNVVVETLEQLG 31 (213)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 467889999999999999999986543
No 494
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=90.17 E-value=0.12 Score=53.67 Aligned_cols=25 Identities=40% Similarity=0.335 Sum_probs=21.4
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
+.-+.|+||+|+|||||.+.|+..+
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCcHHHHHHHHHHcCC
Confidence 3456799999999999999999764
No 495
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.15 E-value=0.12 Score=47.72 Aligned_cols=24 Identities=21% Similarity=0.446 Sum_probs=20.7
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIR 334 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~ 334 (591)
...++|+|++|+|||+|++.+...
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 346899999999999999998763
No 496
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.12 E-value=0.12 Score=48.55 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=20.2
Q ss_pred CCCeEecCCCCcHHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIR 334 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~ 334 (591)
..++|+|++|+|||+|++.+...
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 36899999999999999998764
No 497
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=90.11 E-value=0.11 Score=51.04 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=21.3
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
+.-+.|+||+|+|||||++.|+..+
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3456799999999999999998765
No 498
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=90.10 E-value=0.14 Score=49.09 Aligned_cols=25 Identities=20% Similarity=0.174 Sum_probs=22.1
Q ss_pred CCCeEecCCCCcHHHHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAIRIV 336 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~~l~ 336 (591)
.-++|.|++|+||||+++.|++.+.
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4567889999999999999999884
No 499
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=90.09 E-value=0.1 Score=53.75 Aligned_cols=25 Identities=32% Similarity=0.324 Sum_probs=21.3
Q ss_pred CCCCeEecCCCCcHHHHHHHHHHHH
Q 007723 311 KNNPILLGESGVGKTAIAEGLAIRI 335 (591)
Q Consensus 311 ~~~ilL~GppGvGKT~la~~lA~~l 335 (591)
+.-+.|+||+|+|||||.+.|+..+
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCEEEEECCCCccHHHHHHHHHcCC
Confidence 3456799999999999999998764
No 500
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=90.07 E-value=1.8 Score=44.51 Aligned_cols=22 Identities=23% Similarity=0.226 Sum_probs=17.6
Q ss_pred CCCeEecCCCCcHHHHHHHHHH
Q 007723 312 NNPILLGESGVGKTAIAEGLAI 333 (591)
Q Consensus 312 ~~ilL~GppGvGKT~la~~lA~ 333 (591)
.++++.+|+|+|||..+...+.
T Consensus 59 ~~~li~a~TGsGKT~~~~~~~~ 80 (400)
T 1s2m_A 59 RDILARAKNGTGKTAAFVIPTL 80 (400)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEECCCCcHHHHHHHHHHH
Confidence 5699999999999987655443
Done!